BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780526|ref|YP_003064939.1| putative transcription regulator protein [Candidatus Liberibacter asiaticus str. psy62] (223 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done >gi|297616303|ref|YP_003701462.1| two component transcriptional regulator, winged helix family [Syntrophothermus lipocalidus DSM 12680] gi|297144140|gb|ADI00897.1| two component transcriptional regulator, winged helix family [Syntrophothermus lipocalidus DSM 12680] Length = 228 Score = 175 bits (443), Expect = 4e-42, Method: Composition-based stats. Identities = 53/225 (23%), Positives = 97/225 (43%), Gaps = 7/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D LV++ +G ++E E S D+ ++ L + Sbjct: 5 ILVVEDEELVQELLRLYLEKEGYAVEAAWDGEEALSKFRSNNPDLVILDIML--PKKDGW 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R IRA S P+I ++ + D G DD V KP E++ARV A+ RR + Sbjct: 63 TVCREIRAMSNAPIIMLTAKGEESDRVLGLDLGADDYVCKPFSPIELVARVKAVLRRTSL 122 Query: 122 SNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 +N D EV G L +E +L +L ++ GK ++ Q+ S + Sbjct: 123 ANQDGNRVLFYPGLTVNYDSHLVEVDGRRVSLTPKEFELLWFLASHPGKVYSREQLLSYV 182 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + +D + V++HI +LR+KL + + + + GY + Sbjct: 183 WD-YDYLGDPRTVDTHIKRLREKLESGVKQRYIRTVWGRGYKFEV 226 >gi|147679020|ref|YP_001213235.1| response regulator [Pelotomaculum thermopropionicum SI] gi|146275117|dbj|BAF60866.1| response regulator [Pelotomaculum thermopropionicum SI] Length = 228 Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 85/224 (37%), Gaps = 6/224 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD LV+D +G +E E A D+ ++ L Sbjct: 6 ILVVDDEELVQDLIRLYLEKEGFRVEVARDGEEALAKLGFANPDLVILDIML--PKMDGW 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118 + R IR P+I ++ + + G DD V KP E + V R Sbjct: 64 AVCREIRKTMATPIIMLTAKGEEFDRVLGLELGADDYVCKPFSPIELVARIKAVLRRARG 123 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + S + V G EV G L +E +L +L ++ G+ ++ Q+ ++ Sbjct: 124 GRDSPKVLSFPGLVVDYSGHRVEVDGREVALAPKEFELLWFLASHPGQLYSREQLLKNVW 183 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D + V++HI +LR+KL + + GY + Sbjct: 184 -AYDYLGDTRTVDTHIKRLREKLEAGSEKRYIRTVWGRGYKFEV 226 >gi|323702131|ref|ZP_08113798.1| two component transcriptional regulator, winged helix family [Desulfotomaculum nigrificans DSM 574] gi|323532818|gb|EGB22690.1| two component transcriptional regulator, winged helix family [Desulfotomaculum nigrificans DSM 574] Length = 231 Score = 174 bits (442), Expect = 6e-42, Method: Composition-based stats. Identities = 50/228 (21%), Positives = 91/228 (39%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ +G + + + D+ ++ L G L Sbjct: 4 ILVVDDEQPIRELVKYNLEREGFEVLLAGDGNTGLDMARTEAPDLIILDIML--PGMDGL 61 Query: 62 ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 + R + +P+I +S + + G DD + KP RE++ARV A RR Sbjct: 62 SVCRTLHQEPATRAIPIIMLSARGEEVDKVLGLELGADDYITKPFSPRELIARVKARLRR 121 Query: 119 LKVSNNRAETGPI-----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 N ETG I + D V G L +E +L YL + GK ++ + Sbjct: 122 QTTDNATQETGRIAVGKLIIDQDRFVVSVNGVKQDLTPKEFELLRYLARHPGKVFSRDFL 181 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 I+G ++ + V+ HI +R+KL +++ R +GY Sbjct: 182 LEQIWG-YEYTGDSRTVDVHIRHIRQKLEQIPGAPQFIETVRGVGYRF 228 >gi|225174148|ref|ZP_03728147.1| two component transcriptional regulator, winged helix family [Dethiobacter alkaliphilus AHT 1] gi|225169933|gb|EEG78728.1| two component transcriptional regulator, winged helix family [Dethiobacter alkaliphilus AHT 1] Length = 231 Score = 174 bits (442), Expect = 7e-42, Method: Composition-based stats. Identities = 41/227 (18%), Positives = 88/227 (38%), Gaps = 8/227 (3%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + +++DD +++ +G ++ E S + ++ L Sbjct: 5 LILIVDDEEHIRELVRLYLEKEGFTVALAADGEEAVQKAKSTTPQLIILDLML--PKLDG 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-----ILARVAAI 115 ++ R +R S+VP+I ++ + + G DD + KP RE A Sbjct: 63 WDVCREVRKFSEVPIIMLTAKGEEFDKVLGLELGADDYLTKPFSPRELVARVKAILRRAT 122 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + + + R+ V L +E +L +L + GK + Q+ + Sbjct: 123 PEEQTDTEDVLTFPGLAINHSSREVHVDDREVTLTPKEFDLLWFLATHPGKVFTREQLLT 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 A++G +D + V++HI +LR+K+ V + +GY + Sbjct: 183 AVWG-YDYYGDLRTVDTHIKRLREKVERDGNTPHVKTIWGVGYKFEV 228 >gi|89895637|ref|YP_519124.1| hypothetical protein DSY2891 [Desulfitobacterium hafniense Y51] gi|89335085|dbj|BAE84680.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 263 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 98/224 (43%), Gaps = 5/224 (2%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEK 59 + +++DD +++ +G + + + ++ ++ L G G + Sbjct: 39 VILVVDDEEPIQELLRFNLEKEGYQVLIAADGSEALGILEEKQPELVVLDIMLPGISGLE 98 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 VL R ++P+I ++ + + G DD + KP RE++AR+ A RRL Sbjct: 99 VLNQIRKTPKFVELPVIMLTAKGEEIDKVLGLEIGADDYITKPFSPRELIARIRARLRRL 158 Query: 120 KVSNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 K S + + + D V+GE L +E +L L GK + ++ I Sbjct: 159 KPSEENNDILRQDLHIDLDRFRVSVRGEYIELTPKEFELLRVLATYPGKVYTRDELLERI 218 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 +G ++ A + V+ H+ LR+K+ + + +++ R +GY + Sbjct: 219 WG-YEYAGDTRTVDVHVRHLRQKIEKDPSNPEYIETLRGIGYRL 261 >gi|295104470|emb|CBL02014.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Faecalibacterium prausnitzii SL3/3] Length = 232 Score = 173 bits (438), Expect = 2e-41, Method: Composition-based stats. Identities = 43/228 (18%), Positives = 98/228 (42%), Gaps = 10/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A + + +G + N E ++ + D+ ++ L Sbjct: 6 ILVVDDDANICELLRLYLTKEGYQVTVANDGEEGLEKFNAVKPDMVLLDVM--MPRMDGL 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR P++ ++ + + G DD + KP +E++AR+ A+ RR + Sbjct: 64 EVCRRIRKAGNTPVMMLTAKGETFDKVLGLELGADDYMVKPFDAKEVVARIKAVLRRCQT 123 Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + +E +R+ + + V+G+V P +E +L L ++ + + Q+ Sbjct: 124 TSAAAESTEGVSEFDNLRLDMNSYELRVKGKVVEAPPKELELLNCLASHPNRVYTRDQLL 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 ++G F+ + ++ H+ +LR+KL + + +GY + Sbjct: 184 DEVWG-FEYYGDSRTIDVHVKRLREKLAGASDKWELKTVWGVGYKFEV 230 >gi|51891828|ref|YP_074519.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] gi|51855517|dbj|BAD39675.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] Length = 225 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 50/220 (22%), Positives = 93/220 (42%), Gaps = 6/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD + + +G ++ G + E D ++ L G Sbjct: 6 ILVADDEPELIEILTDYLEAEGYAVTGVETGEEAVARVRDGAFDCVVLDVML--PGMSGF 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E R IRA S VP++ +S + G DD V KP E++ARV A+ RR + Sbjct: 64 EACRAIRAFSDVPILFLSARGEDADKIRGLGLGGDDYVAKPFSPPEVVARVKALLRRYRP 123 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 S + GP+ + G G + +E +L +L + G+ ++ Q++ ++G Sbjct: 124 SAEQWRFGPLTIDPKGYRVWRDGREVAMTAKELELLIFLARHPGQVFSREQLYDRVWG-- 181 Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + + V HI+++R+K+ + + + R LGY Sbjct: 182 -DFGDPRTVTVHINRIREKIEADPSRPQFIQTVRGLGYRF 220 >gi|160942672|ref|ZP_02089915.1| hypothetical protein FAEPRAM212_00144 [Faecalibacterium prausnitzii M21/2] gi|158446027|gb|EDP23030.1| hypothetical protein FAEPRAM212_00144 [Faecalibacterium prausnitzii M21/2] Length = 232 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 43/228 (18%), Positives = 97/228 (42%), Gaps = 10/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A + + +G + N E ++ + D+ ++ L Sbjct: 6 ILVVDDDANICELLRLYLTKEGYQVTVANDGEEGLEKFNAVKPDMVLLDVM--MPRMDGL 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR P++ ++ + + G DD + KP +E++AR+ A+ RR + Sbjct: 64 EVCRRIRKAGNTPVMMLTAKGETFDKVLGLELGADDYMVKPFDAKEVVARIKAVLRRCQT 123 Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + E +R+ + + V+G+V P +E +L L ++ + + Q+ Sbjct: 124 TSAAAESTEGVIEFDNLRLDMNSYELRVKGKVVEAPPKELELLNCLASHPNRVYTRDQLL 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 ++G F+ + ++ H+ +LR+KL + + +GY + Sbjct: 184 DEVWG-FEYYGDSRTIDVHVKRLREKLAGASDKWELKTVWGVGYKFEV 230 >gi|167630147|ref|YP_001680646.1| transcriptional regulatory protein [Heliobacterium modesticaldum Ice1] gi|167592887|gb|ABZ84635.1| transcriptional regulatory protein [Heliobacterium modesticaldum Ice1] Length = 232 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 42/227 (18%), Positives = 92/227 (40%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + +G +++ E D+ ++ L L Sbjct: 4 ILVVEDDQHILELVRFNLEKEGHTVQVAVDGEAALACLQEELPDLIILDLML--PRLDGL 61 Query: 62 ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AA 114 EL R +R+ + P++ ++ + + G DD + KP RE++AR+ Sbjct: 62 ELCRRVRSRNHSAHLPILMLTAKGEEVDKVIGLEMGADDYMTKPFSPRELVARIKALLRR 121 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 R + G + + +D + V G + +E +L +L ++ GK + + Sbjct: 122 ATRSDVRLGGPMQVGELTIDADRYEIRVGGVKQDMTPKEFELLRWLASHPGKVFTREFLL 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 I+G +D + V+ HI LR+K+ + +++ R +GY Sbjct: 182 EKIWG-YDFFGDSRTVDVHIRHLRQKVEKDPGNPRYIETVRGVGYKF 227 >gi|229114656|ref|ZP_04244070.1| Response regulator [Bacillus cereus Rock1-3] gi|228668721|gb|EEL24149.1| Response regulator [Bacillus cereus Rock1-3] Length = 234 Score = 172 bits (436), Expect = 3e-41, Method: Composition-based stats. Identities = 46/228 (20%), Positives = 86/228 (37%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +L+DD + + +G S + S E L D+ ++ L G+ Sbjct: 6 ILLVDDETAILQLLTTILEKEGFSHITTATSAELALSLIEQNNYDLIILDVML--PGQSG 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-------HREILARVA 113 ++ IIR + P+ +S S + F G DD + KP + + L R Sbjct: 64 FDICPIIRQQTDCPIFFLSAKASDLDKISGFSYGADDYITKPFNPLEVVARMKAQLRRHM 123 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + G + + V G V + ++L + N +K +I Sbjct: 124 KQTVPHEQKAHSISFGRFEIDQHSAELTVNGHVVECSAQLFQLLLFFCENPNYVFSKEEI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + ++G ++N V HI KLR+K+ + + + + R LGY Sbjct: 184 YEKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 231 >gi|229095705|ref|ZP_04226685.1| Two-component response regulator [Bacillus cereus Rock3-29] gi|228687738|gb|EEL41636.1| Two-component response regulator [Bacillus cereus Rock3-29] Length = 234 Score = 171 bits (434), Expect = 5e-41, Method: Composition-based stats. Identities = 46/228 (20%), Positives = 86/228 (37%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +L+DD + + +G S + S E L D+ ++ L G+ Sbjct: 6 ILLVDDETAILQLLTTILEKEGFSHITTATSAELALSLTEQNNYDLIILDVML--PGQSG 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-------HREILARVA 113 ++ IIR + P+ +S S + F G DD + KP + + L R Sbjct: 64 FDICPIIRQQTDCPIFFLSAKASDLDKISGFSYGADDYITKPFNPLEVVARMKAQLRRHM 123 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + G + + V G V + ++L + N +K +I Sbjct: 124 KQTVPHEQKAHSISFGRFEIDQHSAELTVNGHVVECSAQLFQLLLFFCENPNYVFSKEEI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + ++G ++N V HI KLR+K+ + + + + R LGY Sbjct: 184 YEKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 231 >gi|313112960|ref|ZP_07798604.1| response regulator receiver domain protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310624725|gb|EFQ08036.1| response regulator receiver domain protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 232 Score = 171 bits (434), Expect = 5e-41, Method: Composition-based stats. Identities = 38/228 (16%), Positives = 89/228 (39%), Gaps = 10/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + +G + N E + + D+ ++ L Sbjct: 6 ILVVDDDTNICELLRLYLTKEGYQVTVANDGEEGLEKFNQVKPDMVLLDVM--MPKMDGL 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAA 114 E+ R IR P++ ++ + + G DD + KP +E++ R Sbjct: 64 EVCRRIRKAGNTPVMMLTAKGETFDKVLGLELGADDYMVKPFDAKEVVARIKAVLRRCQT 123 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + E +R+ + + V+G+V P +E +L L ++ + + Q+ Sbjct: 124 TTAAAESTEGVIEFDNLRLDMNSYELRVKGKVVEAPPKELELLNCLASHPNRVYTRDQLL 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 ++G F+ + ++ H+ +LR+KL + + +GY + Sbjct: 184 DEVWG-FEYYGDSRTIDVHVKRLREKLAGASDKWELKTVWGVGYKFEV 230 >gi|260892914|ref|YP_003239011.1| two component transcriptional regulator, winged helix family [Ammonifex degensii KC4] gi|260865055|gb|ACX52161.1| two component transcriptional regulator, winged helix family [Ammonifex degensii KC4] Length = 237 Score = 171 bits (434), Expect = 5e-41, Method: Composition-based stats. Identities = 45/224 (20%), Positives = 93/224 (41%), Gaps = 6/224 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ +G + E S D+ ++ L Sbjct: 10 ILIVDDEHRIREVLRKYLVAEGFGVGEAADGEAALAEIRSGHWDLVILDIML--PKIDGW 67 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 E+ R IR S VP++ ++ + + G DD + KP RE++ARV R+ Sbjct: 68 EVCREIRKISDVPILMLTARGDEIDRVLGLELGADDYIVKPFSPREVVARVKAVLRRARK 127 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + G + + + R V G+ L +E +L L + GK + ++ ++ Sbjct: 128 SSTPGKQIVLGNVVIEPEARTVTVGGKTLALTPKEFDLLLTLARSPGKVFRREELLDLVW 187 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 G +D + V++H+++LR+KL + + +GY ++ Sbjct: 188 G-YDFYGDSRTVDTHVARLREKLNQAGAPPLIATVWGVGYKLEV 230 >gi|167769138|ref|ZP_02441191.1| hypothetical protein ANACOL_00461 [Anaerotruncus colihominis DSM 17241] gi|167668778|gb|EDS12908.1| hypothetical protein ANACOL_00461 [Anaerotruncus colihominis DSM 17241] Length = 230 Score = 171 bits (434), Expect = 5e-41, Method: Composition-based stats. Identities = 50/226 (22%), Positives = 92/226 (40%), Gaps = 8/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD + + DG ++ N E ++ D+ ++ Sbjct: 6 ILVCDDDRNICELLRLYLEKDGYTVSIANDGEEALAKFTAEAPDLILLDIM--MPKLDGW 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R IR S P+I I+ + + G DD V KP +EI+ARV AI RR Sbjct: 64 QVCREIRKKSDCPIIMITAKGETFDKVLGLELGSDDYVVKPFDPKEIVARVKAIMRRASK 123 Query: 122 SNNRAETGPIRVF-----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 S+ + + + +V G V P +E +L +L +N + + Q+ Sbjct: 124 SSAENDVKEVAYDKLVVNMTKYELKVDGRVVDTPPKELELLYHLASNPNRVYTRDQLLDE 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 ++G F+ + V+ HI +LR+KL + + +GY + Sbjct: 184 VWG-FEYYGDSRTVDVHIKRLREKLEGVSDQWTLKTVWGVGYKFEV 228 >gi|225016728|ref|ZP_03705920.1| hypothetical protein CLOSTMETH_00638 [Clostridium methylpentosum DSM 5476] gi|224950532|gb|EEG31741.1| hypothetical protein CLOSTMETH_00638 [Clostridium methylpentosum DSM 5476] Length = 230 Score = 171 bits (433), Expect = 7e-41, Method: Composition-based stats. Identities = 51/227 (22%), Positives = 100/227 (44%), Gaps = 8/227 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + +G + + E ++ + D ++ L G Sbjct: 6 ILVVDDDKNICELLRLYLEKEGYGVILSHDGEEALVKFNALKPDFVLLDVML--PGLDGW 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R IR S VP+I ++ + + G DD V KP +EI+AR+ AI+RRL Sbjct: 64 QVCREIRKKSNVPVIMLTAKGETFDKVLGLELGADDYVVKPFDTKEIIARIKAIHRRLGQ 123 Query: 122 SNNRAETGPIRVF-----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 SN +AE + + +V G+V P +E +L +L + + + Q+ Sbjct: 124 SNQQAEVKEVVYDKLVVNMTRYELKVDGKVVDTPPKELELLFHLASTPNRVYTRDQLLDE 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 ++G F+ + ++ H+ +LR+KL + + +GY + N Sbjct: 184 VWG-FEYYGDSRTIDVHVKRLREKLEGVSDKWALKTVWGVGYKFEVN 229 >gi|228938339|ref|ZP_04100951.1| Response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228971217|ref|ZP_04131847.1| Response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228977826|ref|ZP_04138209.1| Response regulator [Bacillus thuringiensis Bt407] gi|228781888|gb|EEM30083.1| Response regulator [Bacillus thuringiensis Bt407] gi|228788496|gb|EEM36445.1| Response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228821328|gb|EEM67341.1| Response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326938847|gb|AEA14743.1| two-component response regulator yvrH [Bacillus thuringiensis serovar chinensis CT-43] Length = 234 Score = 171 bits (433), Expect = 7e-41, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 86/228 (37%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +L+DD + + +G S + S E L D+ ++ L G+ Sbjct: 6 ILLVDDETAILQLLTTILEKEGFSHITTATSAEIALSLIKQNNYDLIILDVML--PGQSG 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-------HREILARVA 113 ++ IIR + P+ +S S + F G DD + KP + + L R Sbjct: 64 FDICPIIRQQTDCPIFFLSAKASDLDKISGFSYGADDYITKPFNPLEVVARMKAQLRRHM 123 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + G + + V G + + ++L + N +K +I Sbjct: 124 KQTVPHEQKPHSISFGRFEIDQHSAELTVDGHIVECSAQLFQLLLFFCENPNYVFSKEEI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + ++G ++N V HI KLR+K+ + + + + R LGY Sbjct: 184 YEKVWGAPAYNGDDNTVMVHIRKLREKIEHDPSKPEYIKTVRGLGYKF 231 >gi|295101234|emb|CBK98779.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Faecalibacterium prausnitzii L2-6] Length = 232 Score = 171 bits (433), Expect = 7e-41, Method: Composition-based stats. Identities = 39/228 (17%), Positives = 90/228 (39%), Gaps = 10/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + +G + N E + + D+ ++ L Sbjct: 6 ILVVDDDTNICELLRLYLTKEGYQVTTANDGEEGLEKFNQLKPDMVLLDVM--MPRMDGL 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAA 114 E+ R IR P++ ++ + + G DD + KP +E++ R Sbjct: 64 EVCRRIRKLGNTPVMMLTAKGETFDKVLGLELGADDYMVKPFDTKEVVARIKAVLRRCTV 123 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + S E +R+ + + V+G+V P +E +L L ++ + + Q+ Sbjct: 124 TTSQTESSEGVIEFDNLRLDMNSYELRVKGKVVEAPPKELELLNCLASHPNRVYTRDQLL 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 ++G F+ + ++ H+ +LR+KL + + +GY + Sbjct: 184 DEVWG-FEYYGDSRTIDVHVKRLREKLAGASDKWELKTVWGVGYKFEV 230 >gi|302389531|ref|YP_003825352.1| two component transcriptional regulator, winged helix family [Thermosediminibacter oceani DSM 16646] gi|302200159|gb|ADL07729.1| two component transcriptional regulator, winged helix family [Thermosediminibacter oceani DSM 16646] Length = 232 Score = 171 bits (433), Expect = 7e-41, Method: Composition-based stats. Identities = 49/228 (21%), Positives = 98/228 (42%), Gaps = 10/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + G + + + L + D+ ++ L G L Sbjct: 6 ILVVDDEPNIVELVRFNLENSGFKVITASDGQQALDLVQKEQPDLVILDIML--PGIDGL 63 Query: 62 ELP---RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AI 115 E+ R RA +P+I ++ + + G DD + KP RE++ARV Sbjct: 64 EVCRIFRRQRATRDIPVILLTAKTEEIDKVLGLEMGADDYITKPFSPRELVARVKAVLRR 123 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 +++ S+ + GPI + + + V+GE +E +L L +N GK ++ + Sbjct: 124 ADKVERSDKIIKAGPITIDVERHEVFVEGERKDFTPKEFELLRLLASNPGKVFSREYLLE 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDW 222 I+G +D + V+ HI LR+K+ +++ R +GY + Sbjct: 184 NIWG-YDYLGDTRTVDVHIRHLRQKIERNSDTPQFIETVRGIGYKFNE 230 >gi|258514817|ref|YP_003191039.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] gi|257778522|gb|ACV62416.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] Length = 229 Score = 171 bits (432), Expect = 8e-41, Method: Composition-based stats. Identities = 40/226 (17%), Positives = 83/226 (36%), Gaps = 8/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 + +DD + G +G + +S E + D+ ++ G Sbjct: 5 ILTVDDDPKILKILQHSLGKEGFEVITASSGEEALQKARQSSPDLVILDLM--MPGMDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117 E + ++A +VP+I +S + F GVDD KP + A + + Sbjct: 63 ETYQKLKAQREVPIIILSARTEEVDRVVGFRMGVDDYQTKPFSPTELALRVKAVLRRLGE 122 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 N + G + + R V L ++ +L + +N + K + I Sbjct: 123 PKVNLENMLKYGNLTLDYTKRTVAVNNSKVELTPKQFELLWLMASNPNRVFTKAHLLDKI 182 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 + ++N V HI +LR+K+ + + + + +GY ++ Sbjct: 183 WDSS-FYGDDNTVTVHIRRLREKVETDPSNPEYIKTVWGMGYKFEY 227 >gi|313902101|ref|ZP_07835512.1| two component transcriptional regulator, winged helix family [Thermaerobacter subterraneus DSM 13965] gi|313467619|gb|EFR63122.1| two component transcriptional regulator, winged helix family [Thermaerobacter subterraneus DSM 13965] Length = 294 Score = 171 bits (432), Expect = 8e-41, Method: Composition-based stats. Identities = 43/221 (19%), Positives = 94/221 (42%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V +G +++ +S E + D+ ++ G L Sbjct: 74 ILVVDDDPAVTSLLKRGLAYEGFAVDTASSGEEALRIAREQPPDLVILDIM--MPGMDGL 131 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ + +R A ++P++ ++ + + ++G DD V KP ++ARV A+ RR + Sbjct: 132 EVLQRLRAADPELPVLFLTARDAPADQVQGLEAGADDYVVKPFTFEVLVARVRALLRRHQ 191 Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + + L E ++L M + + + K Q+ ++G Sbjct: 192 AERPQVLRFADLVLDTGTYTARRGQREIHLTALEFKLLPEFMLHPRQVLNKDQLLERVWG 251 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D NV+E ++ +LR+KL + + + R +GY + Sbjct: 252 -YDFGGNANVLEVYVKQLRQKLEAEGEPRLIHTVRGVGYVL 291 >gi|206968610|ref|ZP_03229566.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|206737530|gb|EDZ54677.1| DNA-binding response regulator [Bacillus cereus AH1134] Length = 234 Score = 171 bits (432), Expect = 9e-41, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 86/228 (37%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +L+DD + + +G S + S E L D+ ++ L G+ Sbjct: 6 ILLVDDETAILQLLTTILEKEGFSHITTATSAEMALSLTKQNNYDLIILDVML--PGQSG 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-------HREILARVA 113 ++ IIR + P+ +S S + F G DD + KP + + L R Sbjct: 64 FDICPIIRQQTDCPIFFLSAKASDLDKISGFSYGADDYITKPFNPLEVVARMKAQLRRHM 123 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + G + + V G + + ++L + N +K +I Sbjct: 124 KQTVPHEQKPHSISFGRFEIDQHSAELTVDGHIVECSAQLFQLLLFFCENPNYVFSKEEI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + ++G ++N V HI KLR+K+ + + + + R LGY Sbjct: 184 YEKVWGAPAYNGDDNTVMVHIRKLREKIEHDPSKPEYIKTVRGLGYKF 231 >gi|52144209|ref|YP_082619.1| response regulator [Bacillus cereus E33L] gi|196036495|ref|ZP_03103891.1| DNA-binding response regulator [Bacillus cereus W] gi|228944829|ref|ZP_04107192.1| Two-component response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|51977678|gb|AAU19228.1| response regulator [Bacillus cereus E33L] gi|195990969|gb|EDX54941.1| DNA-binding response regulator [Bacillus cereus W] gi|228814857|gb|EEM61115.1| Two-component response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 234 Score = 171 bits (432), Expect = 9e-41, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 87/228 (38%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +L+DD + + +G S + S E L D+ ++ L G+ Sbjct: 6 ILLVDDETAILQLLTTILEKEGFSHITTATSAEMALSLTQQNDYDLIILDVML--PGQSG 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-------HREILARVA 113 ++ IIR + P+ ++ S + F G DD + KP + + L R Sbjct: 64 FDICPIIRQKTDCPIFFLTAKTSDLDKISGFSHGADDYITKPFNPLEVVARMKAQLRRHM 123 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + + G + + V G V + ++L + N +K +I Sbjct: 124 KQVMPHEQKAHSSSFGRFEIDRYSAELTVNGCVVECSAQLFQLLLFFCENPNYVFSKEEI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + ++G ++N V HI KLR+K+ + + + + R LGY Sbjct: 184 YEKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 231 >gi|30019274|ref|NP_830905.1| two-component response regulator yvrH [Bacillus cereus ATCC 14579] gi|229078408|ref|ZP_04210970.1| Two-component response regulator [Bacillus cereus Rock4-2] gi|296501821|ref|YP_003663521.1| two-component response regulator yvrH [Bacillus thuringiensis BMB171] gi|29894817|gb|AAP08106.1| Two-component response regulator yvrH [Bacillus cereus ATCC 14579] gi|228704901|gb|EEL57325.1| Two-component response regulator [Bacillus cereus Rock4-2] gi|296322873|gb|ADH05801.1| two-component response regulator yvrH [Bacillus thuringiensis BMB171] Length = 234 Score = 171 bits (432), Expect = 9e-41, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 87/228 (38%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +L+DD + + +G S + S E L D+ ++ L G+ Sbjct: 6 ILLVDDETAILQLLTTILEKEGFSHITTATSAEMALSLTKQNNYDLIILDVML--PGQSG 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-------HREILARVA 113 ++ IIR + P+ +S S + F G DD + KP + + L R Sbjct: 64 FDICPIIRQQTDCPIFFLSAKASDLDKISGFSYGADDYITKPFNPLEVVARMKAQLRRHM 123 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + ++ G + + V G + + ++L + N +K +I Sbjct: 124 KQTVPHEQKSHSISFGRFEIDQHSAELTVDGHIVECSAQLFQLLLFFCENPNYVFSKEEI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + ++G ++N V HI KLR+K+ + + + + R LGY Sbjct: 184 YEKVWGAPAYNGDDNTVMVHIRKLREKIEHDPSKPEYIKTVRGLGYKF 231 >gi|228984288|ref|ZP_04144469.1| Two-component response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228775405|gb|EEM23790.1| Two-component response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 234 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 44/228 (19%), Positives = 87/228 (38%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +L+DD + + +G S + S E L D+ ++ L G+ Sbjct: 6 ILLVDDETAILQLLTTILEKEGFSHITTATSAEMALSLTQQNDYDLIILDVML--PGQSG 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-------HREILARVA 113 ++ IIR + P+ ++ S + F G DD + KP + + L + Sbjct: 64 FDICPIIRQKTDCPIFFLTAKTSDLDKISGFSHGADDYITKPFNPLEVVARMKAQLRKHM 123 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + + G + + V G V + ++L + N +K +I Sbjct: 124 KQVMPHEQKAHASSFGRFEIDRYSAELTVNGHVVECSAQLFQLLLFFCENPNYVFSKEEI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + ++G ++N V HI KLR+K+ + + + + R LGY Sbjct: 184 YEKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 231 >gi|228951584|ref|ZP_04113689.1| Two-component response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229149424|ref|ZP_04277660.1| Two-component response regulator [Bacillus cereus m1550] gi|228634066|gb|EEK90659.1| Two-component response regulator [Bacillus cereus m1550] gi|228808149|gb|EEM54663.1| Two-component response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 234 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 86/228 (37%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +L+DD + + +G S + S E L D+ ++ L G+ Sbjct: 6 ILLVDDETAILQLLTTILEKEGFSHITTATSAEIALSLTKQNNYDLIILDVML--PGQSG 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-------HREILARVA 113 ++ IIR + P+ +S S + F G DD + KP + + L R Sbjct: 64 FDICPIIRQQTDCPIFFLSAKASDLDKISGFSYGADDYITKPFNPLEVVARMKAQLRRHM 123 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + G + + V G + + ++L + N +K +I Sbjct: 124 KQTVPHEQKPHSISFGRFEIDQHSAELTVDGHIVECSAQLFQLLLFFCENPNYVFSKEEI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + ++G ++N V HI KLR+K+ + + + + R LGY Sbjct: 184 YEKVWGAPAYNGDDNTVMVHIRKLREKIEHDPSKPEYIKTVRGLGYKF 231 >gi|229171861|ref|ZP_04299431.1| Two-component response regulator [Bacillus cereus MM3] gi|228611633|gb|EEK68885.1| Two-component response regulator [Bacillus cereus MM3] Length = 234 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 46/228 (20%), Positives = 88/228 (38%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +L+DD + + +G S + S E L + D+ ++ L G+ Sbjct: 6 ILLVDDETAILQLLTTILEKEGFSHITTATSAEIALSLTAQNDYDLIILDVML--PGQSG 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-------HREILARVA 113 ++ IIR + P+ ++ S + F G DD + KP + + L R Sbjct: 64 FDICPIIRQTTDCPIFFLTAKTSDLDKISGFSHGADDYITKPFNPLEVVARMKAQLRRHI 123 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + N + G + + V G V + ++L + N +K +I Sbjct: 124 KQAVPHEQKANFSSFGRFEIDRYSAELTVNGHVVECSAQLFQLLLFFCENPNYVFSKEEI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + ++G ++N V HI KLR+K+ + + + + R LGY Sbjct: 184 YEKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 231 >gi|229154782|ref|ZP_04282897.1| Two-component response regulator [Bacillus cereus ATCC 4342] gi|228628730|gb|EEK85442.1| Two-component response regulator [Bacillus cereus ATCC 4342] Length = 234 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 44/228 (19%), Positives = 87/228 (38%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +L+DD + + +G S + S E L D+ ++ L G+ Sbjct: 6 ILLVDDETAILQLLTTILEKEGFSHITTATSAEMALSLTQQNDYDLIILDVML--PGQSG 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-------HREILARVA 113 ++ IIR + P+ ++ S + F G DD + KP + + L R Sbjct: 64 FDICPIIRQKTDCPIFFLTAKTSDLDKISGFSHGADDYITKPFNPLEVVARMKAQLRRHM 123 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + + G + + V G + + ++L + N +K +I Sbjct: 124 KQVMPHEQKAHASSFGRFEIDQHSAELTVNGRIVECSAQLFQLLLFFCENPNYVFSKEEI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + ++G ++N V HI KLR+K+ + + + + R LGY Sbjct: 184 YEKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 231 >gi|47567578|ref|ZP_00238289.1| response regulator DrrA [Bacillus cereus G9241] gi|47555773|gb|EAL14113.1| response regulator DrrA [Bacillus cereus G9241] Length = 234 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 44/228 (19%), Positives = 87/228 (38%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +L+DD + + +G S + S E L D+ ++ L G+ Sbjct: 6 ILLVDDETAILQLLTTILEKEGFSHITTATSAEMALSLTQQNDYDLIILDVML--PGQSG 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-------HREILARVA 113 ++ IIR + P+ ++ S + F G DD + KP + + L R Sbjct: 64 FDICPIIRQKTDCPIFFLTAKTSDLDKISGFSHGADDYITKPFNPLEVVARMKAQLRRHM 123 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + + G + + V G + + ++L + N +K +I Sbjct: 124 KQVMPHEQKAHASSFGRFEIDQHSAELTVNGRIVECSAQLFQLLLFFCENPNYVFSKEEI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + ++G ++N V HI KLR+K+ + + + + R LGY Sbjct: 184 YEKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 231 >gi|229068774|ref|ZP_04202071.1| Two-component response regulator [Bacillus cereus F65185] gi|229177635|ref|ZP_04305012.1| Two-component response regulator [Bacillus cereus 172560W] gi|228605825|gb|EEK63269.1| Two-component response regulator [Bacillus cereus 172560W] gi|228714391|gb|EEL66269.1| Two-component response regulator [Bacillus cereus F65185] Length = 236 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 86/228 (37%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +L+DD + + +G S + S E L D+ ++ L G+ Sbjct: 8 ILLVDDETAILQLLTTILEKEGFSHITTATSAEMALSLTKQNNYDLIILDVML--PGQSG 65 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-------HREILARVA 113 ++ IIR + P+ +S S + F G DD + KP + + L R Sbjct: 66 FDICPIIRQQTDCPIFFLSAKASDLDKISGFSYGADDYITKPFNPLEVVARMKAQLRRHM 125 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + G + + V G + + ++L + N +K +I Sbjct: 126 KQTVPHEQKPHSISFGRFEIDQHSAELTVDGHIVECSAQLFQLLLFFCENPNYVFSKEEI 185 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + ++G ++N V HI KLR+K+ + + + + R LGY Sbjct: 186 YEKVWGAPAYNGDDNTVMVHIRKLREKIEHDPSKPEYIKTVRGLGYKF 233 >gi|229016415|ref|ZP_04173357.1| Two-component response regulator [Bacillus cereus AH1273] gi|229022644|ref|ZP_04179169.1| Two-component response regulator [Bacillus cereus AH1272] gi|228738653|gb|EEL89124.1| Two-component response regulator [Bacillus cereus AH1272] gi|228744823|gb|EEL94883.1| Two-component response regulator [Bacillus cereus AH1273] Length = 233 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 44/227 (19%), Positives = 85/227 (37%), Gaps = 10/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +L+DD + + +G S + S E L D+ ++ L G+ Sbjct: 6 ILLVDDETAILQLLTTILKKEGFSHITTATSAELALSLTEQNNYDLIILDVML--PGQSG 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH------REILARVAA 114 ++ IIR + P+ ++ S + F G DD + KP + + R Sbjct: 64 FDICPIIRQKTDCPIFFLTAKTSDLDKVSGFSYGADDYITKPFNPLEVVARMKAQLRRHM 123 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + G + + V G V + ++L + N +K +I+ Sbjct: 124 QQSVQEQKTHSISFGRFEIDQHSAELTVDGNVVECSAQLFQLLLFFCENPNYVFSKEEIY 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++G ++N V HI KLR+K+ + + + + R LGY Sbjct: 184 EKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 230 >gi|228957490|ref|ZP_04119243.1| Two-component response regulator [Bacillus thuringiensis serovar pakistani str. T13001] gi|229108678|ref|ZP_04238289.1| Two-component response regulator [Bacillus cereus Rock1-15] gi|229126530|ref|ZP_04255544.1| Two-component response regulator [Bacillus cereus BDRD-Cer4] gi|229143826|ref|ZP_04272245.1| Two-component response regulator [Bacillus cereus BDRD-ST24] gi|228639587|gb|EEK95998.1| Two-component response regulator [Bacillus cereus BDRD-ST24] gi|228656919|gb|EEL12743.1| Two-component response regulator [Bacillus cereus BDRD-Cer4] gi|228674819|gb|EEL30052.1| Two-component response regulator [Bacillus cereus Rock1-15] gi|228802180|gb|EEM49044.1| Two-component response regulator [Bacillus thuringiensis serovar pakistani str. T13001] Length = 236 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 87/228 (38%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +L+DD + + +G S + S E L D+ ++ L G+ Sbjct: 8 ILLVDDETAILQLLTTILEKEGFSHITTATSAEMALSLTKQNNYDLIILDVML--PGQSG 65 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-------HREILARVA 113 ++ IIR + P+ +S S + F G DD + KP + + L R Sbjct: 66 FDICPIIRQQTDCPIFFLSAKASDLDKISGFSYGADDYITKPFNPLEVVARMKAQLRRHM 125 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + ++ G + + V G + + ++L + N +K +I Sbjct: 126 KQTVPHEQKSHSISFGRFEIDQHSAELTVDGHIVECSAQLFQLLLFFCENPNYVFSKEEI 185 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + ++G ++N V HI KLR+K+ + + + + R LGY Sbjct: 186 YEKVWGAPAYNGDDNTVMVHIRKLREKIEHDPSKPEYIKTVRGLGYKF 233 >gi|229189308|ref|ZP_04316329.1| Two-component response regulator [Bacillus cereus ATCC 10876] gi|228594208|gb|EEK52006.1| Two-component response regulator [Bacillus cereus ATCC 10876] Length = 234 Score = 170 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 86/228 (37%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +L+DD + + +G S + S E L D+ ++ L G+ Sbjct: 6 ILLVDDETAILQLLTTILEKEGFSHITTATSAEIALSLTKQNHYDLIILDVML--PGQSG 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-------HREILARVA 113 ++ IIR + P+ +S S + F G DD + KP + + L R Sbjct: 64 FDICPIIRQQTDCPIFFLSAKASDLDKISGFSYGADDYITKPFNPLEVVARMKAQLRRHM 123 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + G + + V G + + ++L + N +K +I Sbjct: 124 KQTVPHEQKPHSISFGRFEINQHSAELTVDGHIVECSAQLFQLLLFFCENPNYVFSKEEI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + ++G ++N V HI KLR+K+ + + + + R LGY Sbjct: 184 YEKVWGAPAYNGDDNTVMVHIRKLREKIEHDPSKPEYIKTVRGLGYKF 231 >gi|218896157|ref|YP_002444568.1| DNA-binding response regulator [Bacillus cereus G9842] gi|218545429|gb|ACK97823.1| DNA-binding response regulator [Bacillus cereus G9842] Length = 234 Score = 170 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 87/228 (38%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +L+DD + + +G S + S E L D+ ++ L G+ Sbjct: 6 ILLVDDETAILQLLTTILEKEGFSHITTATSAEIALSLTKENNYDLIILDVML--PGQSG 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-------HREILARVA 113 ++ IIR + P+ +S S + F G DD + KP + + L R Sbjct: 64 FDICPIIRQQTDCPIFFLSAKASDLDKISGFSYGADDYITKPFNPLEVVARMKAQLRRHM 123 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + ++ G + + V G + + ++L + N +K +I Sbjct: 124 KQAVPHEQKSHSISFGRFEIDQHSAELTVDGHIVECSAQLFQLLLFFCENPNYVFSKEEI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + ++G ++N V HI KLR+K+ + + + + R LGY Sbjct: 184 YEKVWGAPAYNGDDNTVMVHIRKLREKIEHDPSKPEYIKTVRGLGYKF 231 >gi|134298575|ref|YP_001112071.1| two component transcriptional regulator [Desulfotomaculum reducens MI-1] gi|134051275|gb|ABO49246.1| two component transcriptional regulator, winged helix family [Desulfotomaculum reducens MI-1] Length = 232 Score = 170 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 49/229 (21%), Positives = 93/229 (40%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D +++ +G + + + + S D+ ++ L G+ L Sbjct: 4 ILVVEDEQPIRELIKYNLEREGFQVIQAANGDIALDMAKSEVPDIILLDIML--PGQDGL 61 Query: 62 ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 + R + +P+I +S + + G DD + KP RE++AR+ A RR Sbjct: 62 SVCRYLHQDAATRSIPIIMLSARGEELDKVLGLEMGADDYITKPFSPRELIARIKARLRR 121 Query: 119 LKVSNN------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 V N R G + + D G L +E +L YL N GK + Sbjct: 122 QTVENQVLEDAGRITVGKLVIDQDRFVVSYNGIKQDLTPKEFELLRYLARNPGKVFTRDF 181 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + I+G +D + + V+ HI +R+KL +++ R +GY Sbjct: 182 LLEQIWG-YDFSGDSRTVDVHIRHIRQKLEQLPDAPQFIETVRGVGYRF 229 >gi|229195420|ref|ZP_04322188.1| Response regulator [Bacillus cereus m1293] gi|228587960|gb|EEK46010.1| Response regulator [Bacillus cereus m1293] Length = 234 Score = 170 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 87/228 (38%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +L+DD + + +G S + S E L D+ ++ L G+ Sbjct: 6 ILLVDDETAILQLLTTILEKEGFSHITTATSAEIALSLTQQNDYDLIILDVML--PGQSG 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-------HREILARVA 113 ++ IIR + P+ ++ S + F G DD + KP + + L R Sbjct: 64 FDICPIIRQKTDCPIFFLTAKTSDLDKISGFSHGADDYITKPFNPLEVVARMKAQLRRHM 123 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + G ++ + V G V + ++L + N +K +I Sbjct: 124 KQVMPHEQKAQSSSFGRFKIDRYSAELTVNGRVVECSAQLFQLLLFFCENPNYVFSKEEI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + ++G ++N V HI KLR+K+ + + + + R LGY Sbjct: 184 YEKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 231 >gi|217958697|ref|YP_002337245.1| DNA-binding response regulator [Bacillus cereus AH187] gi|229137906|ref|ZP_04266505.1| Response regulator [Bacillus cereus BDRD-ST26] gi|217067863|gb|ACJ82113.1| DNA-binding response regulator [Bacillus cereus AH187] gi|228645563|gb|EEL01796.1| Response regulator [Bacillus cereus BDRD-ST26] Length = 234 Score = 170 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 86/228 (37%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +L+DD + + +G S + S E L D+ ++ L G+ Sbjct: 6 ILLVDDETAILQLLTTILEKEGFSHITTATSAEMALSLTQQNDYDLIILDVML--PGQSG 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-------HREILARVA 113 ++ IIR + P+ ++ S + F G DD + KP + + L R Sbjct: 64 FDICPIIRKKTDCPIFFLTAKTSDLDKISGFSHGADDYITKPFNPLEVVARMKAQLRRHM 123 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + G + + V G V + ++L + N +K +I Sbjct: 124 KQVMPHEQKAQSSSFGRFEIDRYSAELTVNGHVVECSAQLFQLLLFFCENPNYVFSKEEI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + ++G ++N V HI KLR+K+ + + + + R LGY Sbjct: 184 YEKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 231 >gi|228919942|ref|ZP_04083297.1| Two-component response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228839758|gb|EEM85044.1| Two-component response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 236 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 87/228 (38%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +L+DD + + +G S + S E L D+ ++ L G+ Sbjct: 8 ILLVDDETAILQLLTTILEKEGFSHITTATSAEIALSLTKENNYDLIILDVML--PGQSG 65 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-------HREILARVA 113 ++ IIR + P+ +S S + F G DD + KP + + L R Sbjct: 66 FDICPIIRQQTDCPIFFLSAKASDLDKISGFSYGADDYITKPFNPLEVVARMKAQLRRHM 125 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + ++ G + + V G + + ++L + N +K +I Sbjct: 126 KQTVPHEQKSHSISFGRFEIDQHSAELTVDGHIVECSAQLFQLLLFFCENPNYVFSKEEI 185 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + ++G ++N V HI KLR+K+ + + + + R LGY Sbjct: 186 YEKVWGAPAYNGDDNTVMVHIRKLREKIEHDPSKPEYIKTVRGLGYKF 233 >gi|301052758|ref|YP_003790969.1| response regulator [Bacillus anthracis CI] gi|300374927|gb|ADK03831.1| response regulator [Bacillus cereus biovar anthracis str. CI] Length = 234 Score = 170 bits (430), Expect = 2e-40, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 87/228 (38%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +L+DD + + +G S + S E L D+ ++ L G+ Sbjct: 6 ILLVDDETAILQLLTTILEKEGFSHITTATSAEMALSLTQQNDYDLIILDVML--PGQSG 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-------HREILARVA 113 ++ IIR + P+ ++ S + F G DD + KP + + L R Sbjct: 64 FDICPIIRQKTDCPIFFLTAKTSDLDKISGFSHGADDYITKPFNPLEVVARMKAQLRRHM 123 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + + G + + V G V + ++L + N +K +I Sbjct: 124 KQAVSNEQKAHSSSFGRFEIDRYSAELTVDGHVVECSAQLFQLLLFFCENPNYVFSKEEI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + ++G ++N V HI KLR+K+ + + + + R LGY Sbjct: 184 YEKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 231 >gi|49477096|ref|YP_035355.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|196037687|ref|ZP_03104998.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|218902316|ref|YP_002450150.1| DNA-binding response regulator [Bacillus cereus AH820] gi|228926259|ref|ZP_04089333.1| Two-component response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229120744|ref|ZP_04249987.1| Two-component response regulator [Bacillus cereus 95/8201] gi|254725504|ref|ZP_05187286.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|49328652|gb|AAT59298.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|196031929|gb|EDX70525.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|218536850|gb|ACK89248.1| DNA-binding response regulator [Bacillus cereus AH820] gi|228662749|gb|EEL18346.1| Two-component response regulator [Bacillus cereus 95/8201] gi|228833356|gb|EEM78919.1| Two-component response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 234 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 87/228 (38%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +L+DD + + +G S + S E L D+ ++ L G+ Sbjct: 6 ILLVDDETAILQLLTTILEKEGFSHITTATSAEMALSLTQQNDYDLIILDVML--PGQSG 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-------HREILARVA 113 ++ IIR + P+ ++ S + F G DD + KP + + L R Sbjct: 64 FDICPIIRQKTDCPIFFLTAKTSDLDKISGFSHGADDYITKPFNPLEVVARMKAQLRRHM 123 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + + G + + V G V + ++L + N +K +I Sbjct: 124 KQVMPHEQKAHSSSFGRFEIDRYSAELTVNGRVVECSAQLFQLLLFFCENPNYVFSKEEI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + ++G ++N V HI KLR+K+ + + + + R LGY Sbjct: 184 YEKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 231 >gi|28210824|ref|NP_781768.1| transcriptional regulatory protein [Clostridium tetani E88] gi|28203262|gb|AAO35705.1| transcriptional regulatory protein [Clostridium tetani E88] Length = 232 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 46/226 (20%), Positives = 100/226 (44%), Gaps = 5/226 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 +++DD +++ +G + + + + + + ++ L G V Sbjct: 6 ILIVDDEEHIRELLRYNLEKEGYKIFCAENGKEALEIAKEKKPTLILLDVMLPQMDGYDV 65 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119 + R + S P+I I+ + + G DD + KP RE++AR+ A+ RR Sbjct: 66 CKEIRKDNSISTTPIIMITAKGEELDKVLGLELGADDYITKPFSIRELIARIKAVLRRTL 125 Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 K + + +++ + + GE L +E ++LE L+ N+G+ + + + I+ Sbjct: 126 LKSTEEPFKFEGLKMDFEKHEVMKDGEKVDLTLKEFQLLEILIKNKGRVLTREYLLDKIW 185 Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223 G ++ E V+ HI LR+K+ + +++ R +GY + N Sbjct: 186 G-YEYIGETRTVDVHIRHLRQKVEDDDKNPKYIETIRGVGYRFNLN 230 >gi|228964165|ref|ZP_04125288.1| Two-component response regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|228795515|gb|EEM42999.1| Two-component response regulator [Bacillus thuringiensis serovar sotto str. T04001] Length = 236 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 88/228 (38%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +L+DD + + +G S + S E L D+ ++ L G+ Sbjct: 8 ILLVDDETAILQLLTTILEKEGFSHITTATSAEIALSLTKENNYDLIILDVML--PGQSG 65 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-------HREILARVA 113 ++ IIR + P+ +S S + F G DD + KP + + L R Sbjct: 66 FDICPIIRQQTDCPIFFLSAKASDLDKISGFSYGADDYITKPFNPLEVVARMKAQLRRHM 125 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + +++ G + + V G + + ++L + N +K +I Sbjct: 126 KQAVPHEQNSHSISFGRFEIDQHSAELTVDGHIVECSAQLFQLLLFFCENPNYVFSKEEI 185 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + ++G ++N V HI KLR+K+ + + + + R LGY Sbjct: 186 YEKVWGAPAYNGDDNTVMVHIRKLREKIEHDPSKPEYIKTVRGLGYKF 233 >gi|218234767|ref|YP_002365906.1| DNA-binding response regulator [Bacillus cereus B4264] gi|218162724|gb|ACK62716.1| DNA-binding response regulator [Bacillus cereus B4264] Length = 234 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 87/228 (38%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +L+DD + + +G S + S E L D+ ++ L G+ Sbjct: 6 ILLVDDETAILQLLTTILEKEGFSHITTATSAEIALSLTKQNNYDLIILDVML--PGQSG 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-------HREILARVA 113 ++ IIR + P+ +S S + F G DD + KP + + L R Sbjct: 64 FDICPIIRQQTDCPIFFLSAKASDLDKISGFSYGADDYITKPFNPLEVVARMKAQLRRHM 123 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + ++ G + + V G + + ++L + N +K +I Sbjct: 124 KQTIPHEQKSHSISFGRFEIDQHSAELTVDGHIVECSAQLFQLLLFFCENPNYVFSKEEI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + ++G ++N V HI KLR+K+ + + + + R LGY Sbjct: 184 YEKVWGAPAYNGDDNTVMVHIRKLREKIEHDPSKPEYIKTVRGLGYKF 231 >gi|302390749|ref|YP_003826570.1| two component transcriptional regulator, winged helix family [Thermosediminibacter oceani DSM 16646] gi|302201377|gb|ADL08947.1| two component transcriptional regulator, winged helix family [Thermosediminibacter oceani DSM 16646] Length = 229 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 46/228 (20%), Positives = 96/228 (42%), Gaps = 9/228 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + E + S ++ ++ L + Sbjct: 5 ILVVDDEKPIVDILKYNLAKEGYEVIAAYDGEEAIEVAFSQNPNLILLDVML--PKQDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + +R P+I ++ + + G DD V KP RE++AR+ A RRL + Sbjct: 63 QVCKKLREKLACPIIMLTAKGEEVDKVLGLELGADDYVTKPFGMRELMARIKANLRRLTL 122 Query: 122 SNNRAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 SN E + + +G L RE +L++L A G+ ++ ++ Sbjct: 123 SNPVEEQKLLKVKDLEIDLASFQVRKKGNTLELTFREFELLKFLAAQPGQVFSREKLLEE 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223 ++G ++ + V+ I +LR+K+ + + +KR +GY + N Sbjct: 183 VWG-YEYYGDIRTVDVTIRRLREKIEDDPSNPSYIKTKRGVGYYFNRN 229 >gi|75761429|ref|ZP_00741398.1| Two-component response regulator yvrH [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228899799|ref|ZP_04064045.1| Two-component response regulator [Bacillus thuringiensis IBL 4222] gi|228906846|ref|ZP_04070715.1| Two-component response regulator [Bacillus thuringiensis IBL 200] gi|74491087|gb|EAO54334.1| Two-component response regulator yvrH [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228852850|gb|EEM97635.1| Two-component response regulator [Bacillus thuringiensis IBL 200] gi|228859818|gb|EEN04232.1| Two-component response regulator [Bacillus thuringiensis IBL 4222] Length = 236 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 87/228 (38%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +L+DD + + +G S + S E L D+ ++ L G+ Sbjct: 8 ILLVDDETAILQLLTTILEKEGFSHITTATSAEIALSLTKENNYDLIILDVML--PGQSG 65 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-------HREILARVA 113 ++ IIR + P+ +S S + F G DD + KP + + L R Sbjct: 66 FDICPIIRQQTDCPIFFLSAKASDLDKISGFSYGADDYITKPFNPLEVVARMKAQLRRHM 125 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + ++ G + + V G + + ++L + N +K +I Sbjct: 126 KQAVPHEQKSHSISFGRFEIDQHSAELTVDGHIVECSAQLFQLLLFFCENPNYVFSKEEI 185 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + ++G ++N V HI KLR+K+ + + + + R LGY Sbjct: 186 YEKVWGAPAYNGDDNTVMVHIRKLREKIEHDPSKPEYIKTVRGLGYKF 233 >gi|324325234|gb|ADY20494.1| DNA-binding response regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 234 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 87/228 (38%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +L+DD + + +G S + S E L D+ ++ L G+ Sbjct: 6 ILLVDDETAILQLLTTILEKEGFSHITTATSAEMALSLTQQNDYDLIILDVML--PGQSG 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-------HREILARVA 113 ++ IIR + P+ ++ S + F G DD + KP + + L R Sbjct: 64 FDICPIIRQKTDCPIFFLTAKTSDLDKISGFSHGADDYITKPFNPLEVVARMKAQLRRHM 123 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + + G + + V G V + ++L + N +K +I Sbjct: 124 KQVMPHEQKAHASSFGRFEIDRYSAELTVNGRVVECSAQLFQLLLFFCENPNYVFSKEEI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + ++G ++N V HI KLR+K+ + + + + R LGY Sbjct: 184 YEKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 231 >gi|118476709|ref|YP_893860.1| response regulator [Bacillus thuringiensis str. Al Hakam] gi|196044305|ref|ZP_03111541.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|229183424|ref|ZP_04310649.1| Two-component response regulator [Bacillus cereus BGSC 6E1] gi|118415934|gb|ABK84353.1| response regulator [Bacillus thuringiensis str. Al Hakam] gi|196024944|gb|EDX63615.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|228600008|gb|EEK57603.1| Two-component response regulator [Bacillus cereus BGSC 6E1] Length = 234 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 44/228 (19%), Positives = 87/228 (38%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +L+DD + + +G S + S E L D+ ++ L G+ Sbjct: 6 ILLVDDETAILQLLTTILEKEGFSHITTATSAEMALSLTQQNDYDLIILDVML--PGQSG 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-------HREILARVA 113 ++ IIR + P+ ++ + + F G DD + KP + + L R Sbjct: 64 FDICPIIRQKTDCPIFFLTAKTADLDKISGFSHGADDYITKPFNPLEVVARMKAQLRRHM 123 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + + G + + V G V + ++L + N +K +I Sbjct: 124 KQVMPHEQKAHSSSFGRFEIDRYSAELTVNGRVVECSAQLFQLLLFFCENPNYVFSKEEI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + ++G ++N V HI KLR+K+ + + + + R LGY Sbjct: 184 YEKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 231 >gi|228913796|ref|ZP_04077421.1| Two-component response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228932498|ref|ZP_04095379.1| Two-component response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228827188|gb|EEM72941.1| Two-component response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228845735|gb|EEM90761.1| Two-component response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 234 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 87/228 (38%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +L+DD + + +G S + S E L D+ ++ L G+ Sbjct: 6 ILLVDDETAILQLLTTILEKEGFSHITTATSAEIALSLTQQNDYDLIILDVML--PGQSG 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-------HREILARVA 113 ++ IIR + P+ ++ S + F G DD + KP + + L R Sbjct: 64 FDICPIIRQKTDCPIFFLTAKTSDLDKISGFSHGADDYITKPFNPLEVVARMKAQLRRHM 123 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + + G + + V G V + ++L + N +K +I Sbjct: 124 KQVMPHEQKAHSSSFGRFEIDRYSAELTVNGRVVECSAQLFQLLLFFCENPNYVFSKEEI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + ++G ++N V HI KLR+K+ + + + + R LGY Sbjct: 184 YEKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 231 >gi|225863073|ref|YP_002748451.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|225785922|gb|ACO26139.1| DNA-binding response regulator [Bacillus cereus 03BB102] Length = 234 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 87/228 (38%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +L+DD + + +G S + S E L D+ ++ L G+ Sbjct: 6 ILLVDDETAILQLLTTILEKEGFSHITTATSAEMALSLTQQNDYDLIILDVML--PGQSG 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-------HREILARVA 113 ++ IIR + P+ ++ S + F G DD + KP + + L R Sbjct: 64 FDICPIIRQKTDCPIFFLTAKTSDLDKISGFSHGADDYITKPFNPLEVVARMKAQLRRHM 123 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + + G + + V G V + ++L + N +K +I Sbjct: 124 KQVMPHEKKAHSSSFGRFEIDRYSAELTVNGRVVECSAQLFQLLLFFCENPNYVFSKEEI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + ++G ++N V HI KLR+K+ + + + + R LGY Sbjct: 184 YEKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 231 >gi|222094843|ref|YP_002528903.1| response regulator [Bacillus cereus Q1] gi|221238901|gb|ACM11611.1| response regulator [Bacillus cereus Q1] Length = 234 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 86/228 (37%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +L+DD + + +G S + S E L D+ ++ L G+ Sbjct: 6 ILLVDDETAILQLLTTILEKEGFSHITTATSAEMALSLTQQNDYDLIILDVML--PGQSG 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-------HREILARVA 113 ++ IIR + P+ ++ S + F G DD + KP + + L R Sbjct: 64 FDICPIIRKKTDCPIFFLTAKTSDLDKISGFSHGADDYITKPFNPLEVVARMKAQLRRHM 123 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + G + + V G V + ++L + N +K +I Sbjct: 124 KQVMPHEQKAQSSSFGRFEIDRYSAELTVNGRVVECSAQLFQLLLFFCENPNYVFSKEEI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + ++G ++N V HI KLR+K+ + + + + R LGY Sbjct: 184 YEKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 231 >gi|323704002|ref|ZP_08115625.1| two component transcriptional regulator, winged helix family [Desulfotomaculum nigrificans DSM 574] gi|323531031|gb|EGB20947.1| two component transcriptional regulator, winged helix family [Desulfotomaculum nigrificans DSM 574] Length = 230 Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats. Identities = 53/228 (23%), Positives = 101/228 (44%), Gaps = 10/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD A ++D +G ++ + L + D+ ++ L G L Sbjct: 4 ILIIDDEAKIRDLVKVYLVKEGFEVQELSDGNEAVNLIKAEHYDLVLLDLML--PGVDGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + IR SQVP+I ++ + + G DD + KP RE++ARV A+ RR+ Sbjct: 62 TICKEIRKFSQVPVIILTARGDEIDRVIGLEVGADDYIVKPFSPREMVARVKAVLRRMAP 121 Query: 122 SNNRAETGPI-------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + R V+G+ L RE +L +L + G+ ++ Q+ Sbjct: 122 GTVNLPQPERLLTFPDLEINPESRVVVVKGQEISLTPREFDLLLFLASFPGRAFSREQLL 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + ++G +D + V++HI++LR KL P+ + +GY + Sbjct: 182 TNVWG-YDYFGDLRTVDTHINRLRDKLSVNGARQPIATVWGVGYKFEV 228 >gi|206976559|ref|ZP_03237465.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|206745242|gb|EDZ56643.1| DNA-binding response regulator [Bacillus cereus H3081.97] Length = 234 Score = 169 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 86/228 (37%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +L+DD + + +G S + S E L D+ ++ L G+ Sbjct: 6 ILLVDDETAILQLLTTILEKEGFSHITTATSAEIALSLTQQNDYDLIILDVML--PGQSG 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-------HREILARVA 113 ++ IIR + P+ ++ S + F G DD + KP + + L R Sbjct: 64 FDICPIIRKKTDCPIFFLTAKTSDLDKISGFSHGADDYITKPFNPLEVVARMKAQLRRHM 123 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + G + + V G V + ++L + N +K +I Sbjct: 124 KQVMPHEQKAQSSSFGRFEIDRYSAELTVNGRVVECSAQLFQLLLFFCENPNYVFSKEEI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + ++G ++N V HI KLR+K+ + + + + R LGY Sbjct: 184 YEKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 231 >gi|296132738|ref|YP_003639985.1| two component transcriptional regulator, winged helix family [Thermincola sp. JR] gi|296031316|gb|ADG82084.1| two component transcriptional regulator, winged helix family [Thermincola potens JR] Length = 230 Score = 169 bits (428), Expect = 3e-40, Method: Composition-based stats. Identities = 44/229 (19%), Positives = 93/229 (40%), Gaps = 11/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD V + +G + + +S + D+ ++ L Sbjct: 4 ILVADDDPNVIELLKIYLQKEGYEVFFAENGREAVDKANSTKPDLIVLDLM--MPEIDGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------AI 115 E+ R IR HS+VP+I ++ + + G DD + KP + RE++AR+ + Sbjct: 62 EVCRQIRMHSRVPIIMLTAKDEDMDKILGLEMGADDYITKPFNPREVVARIKAVLRRVSD 121 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + + ++QG P +E +L L +N G+ + Q+ Sbjct: 122 ISTDSGKQQVLKYNGLEINIMDFTVKLQGREIPFTPKELELLWLLASNPGRVYTREQLLE 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSIDW 222 ++G +D + V++HI ++RKK+ + + + +GY + Sbjct: 182 KVWG-YDYFGDSRTVDTHIKRIRKKIGSAEESTSFDIKTVWGVGYKFEV 229 >gi|229160173|ref|ZP_04288173.1| Two-component response regulator [Bacillus cereus R309803] gi|228623307|gb|EEK80133.1| Two-component response regulator [Bacillus cereus R309803] Length = 234 Score = 169 bits (428), Expect = 3e-40, Method: Composition-based stats. Identities = 46/228 (20%), Positives = 87/228 (38%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +L+DD + + +G S + S E L D+ ++ L G+ Sbjct: 6 ILLVDDETAILQLLTTILEKEGFSHITTATSAEMALSLTGQHNYDLILLDVML--PGQSG 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-------REILARVA 113 ++ IIR + P+ +S S + F G DD + KP + + L R Sbjct: 64 FDICPIIRQQTDCPIFFLSAKASDLDKISGFSYGADDYITKPFNPLEVVARIKAQLRRHM 123 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + + G + + V G V + ++L + N +K +I Sbjct: 124 KQTVSHESNVHSISFGRFEINQHSAELTVDGHVVECSAQLFQLLLFFCENPNYVFSKEEI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + ++G ++N V HI KLR+K+ + + + + R LGY Sbjct: 184 YEKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 231 >gi|229028889|ref|ZP_04184990.1| Response regulator [Bacillus cereus AH1271] gi|228732460|gb|EEL83341.1| Response regulator [Bacillus cereus AH1271] Length = 234 Score = 169 bits (427), Expect = 3e-40, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 87/228 (38%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +L+DD + + +G S + S E L D+ ++ L G+ Sbjct: 6 ILLVDDETAILQLLTTILEKEGFSHITTATSAEIALSLTEKNDYDLIILDVML--PGQSG 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-------HREILARVA 113 ++ IIR + P+ ++ S + F G DD + KP + + L R Sbjct: 64 FDICPIIRKKTDCPIFFLTAKTSDLDKISGFSQGADDYITKPFNPLEVVARMKAQLRRHM 123 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + + G + + V G V + ++L + N +K +I Sbjct: 124 KQAVPNEQKAHSSSFGRFEIDRYSAELTVNGHVVECSAQLFQLLLFFCENPNYVFSKEEI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + ++G ++N V HI KLR+K+ + + + + R LGY Sbjct: 184 YEKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 231 >gi|114566483|ref|YP_753637.1| response regulator receiver protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337418|gb|ABI68266.1| response regulator receiver protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 239 Score = 169 bits (427), Expect = 3e-40, Method: Composition-based stats. Identities = 42/228 (18%), Positives = 91/228 (39%), Gaps = 10/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 +++DD + + +G + + + A D+ ++ L G +V Sbjct: 6 ILVVDDETHIVELVKFNLEKEGYRVAVAYDGQCALEMVKDAPPDLILLDIMLPQMDGLEV 65 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI----- 115 + + +P+I ++ T+ + G DD + KP RE++ARV A Sbjct: 66 CRTLKQHSEYKTIPIIMLTAKGEEIDTILGLEMGADDYIKKPFSPREMVARVKARLRALR 125 Query: 116 --YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + V + + + E L +E +L + +N+GK + + Sbjct: 126 ILKAEKAMGQKAYVFKELTVVPEKYEAFIGEEKLELTPKEFELLRLMASNQGKVFTREVL 185 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 ++G ++ + + V+ HI LR+KL + D +++ R +GY Sbjct: 186 LEKVWG-YEFSGDTRTVDVHIRHLRQKLGDDSTYPDYIETVRGVGYRF 232 >gi|229101805|ref|ZP_04232520.1| Two-component response regulator [Bacillus cereus Rock3-28] gi|228681598|gb|EEL35760.1| Two-component response regulator [Bacillus cereus Rock3-28] Length = 234 Score = 169 bits (427), Expect = 3e-40, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 85/228 (37%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +L+DD + + +G S + S E L D+ ++ L + Sbjct: 6 ILLVDDETAILQLLTTILEKEGFSHITTATSAELALSLTEQNNYDLIILDVML--PEQSG 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-------HREILARVA 113 ++ IIR + P+ +S S + F G DD + KP + + L R Sbjct: 64 FDICPIIRQQTDCPIFFLSAKASDLDKISGFSYGADDYITKPFNPLEVVARMKAQLRRHM 123 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + G + + V G V + ++L + N +K +I Sbjct: 124 KQTVPHEQKAHSISFGRFEIDQHSAELTVNGHVVECSAQLFQLLLFFCENPNYVFSKEEI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + ++G ++N V HI KLR+K+ + + + + R LGY Sbjct: 184 YEKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 231 >gi|51891888|ref|YP_074579.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] gi|51855577|dbj|BAD39735.1| two-component response regulator, probably involved in phosphate sensing [Symbiobacterium thermophilum IAM 14863] Length = 235 Score = 169 bits (427), Expect = 3e-40, Method: Composition-based stats. Identities = 49/225 (21%), Positives = 90/225 (40%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + G + ++ E + D+ ++ L G Sbjct: 8 ILVVDDEPSILELVAYNLRRAGFEVLTADNGEDGLRIAREEEIDLVILDVML--PGIDGF 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R HS++P++ ++ + F+ G DD V KP RE+ RV AI RR + Sbjct: 66 EVLRALRRHSELPVLMLTARGEEIDRVVGFEIGADDYVTKPFSPRELTGRVKAILRRARR 125 Query: 122 SNNRAETG-----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 S + P+ + + G L E +IL L + G+ + ++ Sbjct: 126 SAEPQDQDTLVLGPLTINFASYEVLRDGRRVDLTPTEFQILGVLARSPGRVFTRDELVDR 185 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + G D + V+ HI LR KL +++ R +GY Sbjct: 186 VMG-PDFYGDVRTVDVHIRHLRAKLEENPSEPRLIETVRGVGYRF 229 >gi|229090161|ref|ZP_04221411.1| Two-component response regulator [Bacillus cereus Rock3-42] gi|228693238|gb|EEL46949.1| Two-component response regulator [Bacillus cereus Rock3-42] Length = 234 Score = 169 bits (427), Expect = 4e-40, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 87/228 (38%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +L+DD + + +G S + S E L D+ ++ L G+ Sbjct: 6 ILLVDDETAILQLLTTILEKEGFSHITTATSAEMALSLTQQNDYDLIILDVML--PGQSG 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-------HREILARVA 113 ++ IIR + P+ ++ S + F G DD + KP + + L R Sbjct: 64 FDICPIIRQKTDCPIFFLTAKTSDLDKISGFSHGADDYITKPFNPLEVVARMKAQLRRHM 123 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + + G + + V G V + ++L + N +K +I Sbjct: 124 KQVIPHEQKAHSSSFGRFEIDRYSAELTVNGRVVECSAQLFQLLLFFCENPNYVFSKEEI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + ++G ++N V HI KLR+K+ + + + + R LGY Sbjct: 184 YEQVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 231 >gi|42780293|ref|NP_977540.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|42736212|gb|AAS40148.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] Length = 234 Score = 168 bits (426), Expect = 4e-40, Method: Composition-based stats. Identities = 46/228 (20%), Positives = 88/228 (38%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +L+DD + + +G S + S E L D+ ++ L G+ Sbjct: 6 ILLVDDETAILQLLTTILEKEGFSHITTATSAEIALSLTEQNDYDLIILDVML--PGQSG 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-------HREILARVA 113 ++ IIR + P+ ++ S + F G DD + KP + + L R Sbjct: 64 FDICPIIRQKTDCPIFFLTAKASDLDKISGFAHGADDYITKPFNPLEVVARMKAQLRRHM 123 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + + G + D + V G V + ++L + N +K +I Sbjct: 124 KQVMTHEQKAHSSSFGRFAIDRDSAELTVNGHVVECSAQLFQLLLFFCENPNYVFSKEEI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + ++G ++N V HI KLR+K+ + + + + R LGY Sbjct: 184 YEKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 231 >gi|295838770|ref|ZP_06825703.1| DNA-binding response regulator ResD [Streptomyces sp. SPB74] gi|295827181|gb|EFG65293.1| DNA-binding response regulator ResD [Streptomyces sp. SPB74] Length = 345 Score = 168 bits (426), Expect = 4e-40, Method: Composition-based stats. Identities = 48/222 (21%), Positives = 92/222 (41%), Gaps = 7/222 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD V + G +++ + R D+ ++ L G LE Sbjct: 17 LVVDDDPTVAEVVAGYLDRAGYTVDLAGDGPSALARAHAHRPDLVVLDLML--PGMDGLE 74 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +R + VP++ ++ + + + G DD V KP RE++ RVA++ RR Sbjct: 75 VCRRLRERAAVPVVMLTARGDEEDRVLGLEQGADDYVTKPFSPRELVLRVASVLRRTGPD 134 Query: 123 NNRAETGPIR--VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 A R V R GE L RE +L + + + G+ + ++ ++G Sbjct: 135 AVSAPVRLGRLAVDPAARLATRDGEALSLTLREFDLLAFFLRHPGRAFGREELMREVWGW 194 Query: 181 FDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 E + + V HI +LR K+ + + + +GY + Sbjct: 195 --EFGDLSTVTVHIRRLRGKIEDDPAAPRAIRTVWGVGYRFE 234 >gi|257440065|ref|ZP_05615820.1| DNA-binding response regulator SrrA [Faecalibacterium prausnitzii A2-165] gi|257197417|gb|EEU95701.1| DNA-binding response regulator SrrA [Faecalibacterium prausnitzii A2-165] Length = 232 Score = 168 bits (426), Expect = 5e-40, Method: Composition-based stats. Identities = 38/228 (16%), Positives = 90/228 (39%), Gaps = 10/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + +G + N E + + D+ ++ L Sbjct: 6 ILVVDDDTNICELLRLYLTKEGYQVTTANDGEEGLDKFNQVKPDMVLLDVM--MPKMDGL 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAA 114 E+ R IR P++ ++ + + G DD + KP +E++ R Sbjct: 64 EVCRRIRKLGNTPVMMLTAKGETFDKVLGLELGADDYMVKPFDTKEVVARIKAVLRRCTT 123 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + + E +R+ + + V+G+V P +E +L L ++ + + Q+ Sbjct: 124 TTAQTESTEGVIEFDNLRLDMNSYELRVKGKVVEAPPKELELLNCLASHPNRVYTRDQLL 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 ++G F+ + ++ H+ +LR+KL + + +GY + Sbjct: 184 DEVWG-FEYYGDSRTIDVHVKRLREKLAGASDKWELKTVWGVGYKFEV 230 >gi|160934780|ref|ZP_02082166.1| hypothetical protein CLOLEP_03655 [Clostridium leptum DSM 753] gi|156866233|gb|EDO59605.1| hypothetical protein CLOLEP_03655 [Clostridium leptum DSM 753] Length = 229 Score = 168 bits (425), Expect = 5e-40, Method: Composition-based stats. Identities = 40/225 (17%), Positives = 91/225 (40%), Gaps = 7/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + +G + N + L ++ ++ L Sbjct: 6 IMVVDDDKNICELLRLYLEKEGYQVVIANDGKEAVELNEKEDPELILLDIML--PQLDGW 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYR 117 ++ R IR SQVP+I ++ + + + G DD + KP +E++AR+ + Sbjct: 64 QVCREIRKKSQVPIIMLTAKGEVFDKVLGLELGADDYIVKPFETKEVVARIKAVLRRTGQ 123 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + + + + +V G P +E ++ +L +N + + Q+ + Sbjct: 124 NQGEAVKEVKYDKLSINLTNYELKVNGVQVDTPPKEMELIYHLASNPNRVFTRDQLLDEV 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +G FD + V+ H+ +LR+KL + + +GY + Sbjct: 184 WG-FDYYGDSRTVDVHVKRLREKLEGVSDKWALKTVWGVGYKFEV 227 >gi|288556018|ref|YP_003427953.1| two-component response regulator [Bacillus pseudofirmus OF4] gi|288547178|gb|ADC51061.1| two-component response regulator [Bacillus pseudofirmus OF4] Length = 238 Score = 168 bits (425), Expect = 6e-40, Method: Composition-based stats. Identities = 38/231 (16%), Positives = 87/231 (37%), Gaps = 14/231 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ + +E + E L D+ ++ G + Sbjct: 7 ILVVDDEDRIRRLLKMYLERENYEVEEAENGEKALSLALEIDYDLILLDIM--MPGMDGI 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112 E+ + +R P++ ++ + F+ G DD + KP RE + Sbjct: 65 EVCQELRKTKATPVMMLTAKGEEANRVQGFEVGTDDYIVKPFSPREVVLRVKALLRRSST 124 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + + + + +D V G+ L +E +L YL + K ++ Q Sbjct: 125 TKFLQTDTQTKDVLVFPHLTIDNDAHRVSVNGDEISLTPKEYELLHYLAQSPDKVFSREQ 184 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSID 221 + ++ +D + V++HI +LR+KL + + + +GY + Sbjct: 185 LLKDVW-NYDFFGDLRTVDTHIKRLREKLNRISPEAAAMISTVWGVGYKFE 234 >gi|219670061|ref|YP_002460496.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219540321|gb|ACL22060.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 227 Score = 168 bits (425), Expect = 6e-40, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 98/224 (43%), Gaps = 5/224 (2%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEK 59 + +++DD +++ +G + + + ++ ++ L G G + Sbjct: 3 VILVVDDEEPIQELLKFNLEKEGYQVLMAADGSEALRILEEKQPELVVLDIMLPGISGLE 62 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 VL R ++P+I ++ + + G DD + KP RE++AR+ A RRL Sbjct: 63 VLNQIRKTPKFVELPVIMLTAKGEEIDKVLGLEIGADDYITKPFSPRELIARIRARLRRL 122 Query: 120 KVSNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 K S + + + D V+GE L +E +L L GK + ++ I Sbjct: 123 KPSEENNDILRQDLHIDLDRFRVSVRGEYIELTPKEFELLRVLATYPGKVYTRDELLERI 182 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 +G ++ A + V+ H+ LR+K+ + + +++ R +GY + Sbjct: 183 WG-YEYAGDTRTVDVHVRHLRQKIEKDPSNPEYIETLRGIGYRL 225 >gi|291484740|dbj|BAI85815.1| two-component response regulator [Bacillus subtilis subsp. natto BEST195] Length = 251 Score = 168 bits (425), Expect = 6e-40, Method: Composition-based stats. Identities = 37/232 (15%), Positives = 85/232 (36%), Gaps = 14/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++ + +++ + + A D+ ++ G + Sbjct: 20 ILVVDDEARIRRLLRMYLERENYAIDEAENGDEAIAKGLEANYDLILLDLM--MPGTDGI 77 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112 E+ R IR P+I ++ + F++G DD + KP RE A Sbjct: 78 EVCRQIREKKATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRASQ 137 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + + N + + D G L +E +L +L K + + Sbjct: 138 TSYFNANTPTKNVLVFSHLSIDHDAHRVTADGTEVSLTPKEYELLYFLAKTPDKVYDREK 197 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN--KLGFDPVDSKRFLGYSIDW 222 + ++ ++ + V++H+ +LR+KL + + +GY + Sbjct: 198 LLKEVW-QYEFFGDLRTVDTHVKRLREKLNKVSPEAAKKIVTVWGVGYKFEV 248 >gi|329937264|ref|ZP_08286863.1| response regulator [Streptomyces griseoaurantiacus M045] gi|329303545|gb|EGG47431.1| response regulator [Streptomyces griseoaurantiacus M045] Length = 277 Score = 167 bits (424), Expect = 7e-40, Method: Composition-based stats. Identities = 43/223 (19%), Positives = 88/223 (39%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V + G ++ ++ R D+ ++ L G L Sbjct: 22 ILVVDDDPTVAEVVSGYLDRAGYVVDRAEDGPAALDRAAAHRPDLVVLDLML--PGMDGL 79 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R + VP++ ++ + + G DD V KP RE++ RV ++ RR + Sbjct: 80 EVCRRLRENGPVPVVMLTARGDEDDRILGLEVGADDYVTKPFSPRELVLRVQSVLRRARP 139 Query: 122 SNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + R G L RE +L +L+A+ K + ++ ++G Sbjct: 140 GPGIRPLHAAGLVLDPAARRATKNGAELALTLREFDLLAFLLAHPRKVFGREELMREVWG 199 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221 + + V H+ +LR K+ + + + +GY + Sbjct: 200 WD--FGDLSTVTVHVRRLRGKVEDDPARPLLIQTVWGVGYRFE 240 >gi|229056843|ref|ZP_04196242.1| Two-component response regulator [Bacillus cereus AH603] gi|228720493|gb|EEL72062.1| Two-component response regulator [Bacillus cereus AH603] Length = 233 Score = 167 bits (424), Expect = 7e-40, Method: Composition-based stats. Identities = 44/227 (19%), Positives = 84/227 (37%), Gaps = 10/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +LIDD + + +G S + S E L D+ ++ L G+ Sbjct: 6 ILLIDDETAILQLLTTILEKEGFSHITTATSAEIALSLTEQNNYDLIILDVML--PGQSG 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH------REILARVAA 114 ++ IIR + P+ ++ S + F G DD + KP + + R Sbjct: 64 FDICPIIRQKTDCPIFFLTAKTSDVDKISGFSYGADDYITKPFNPLEVVARMKAQLRRHM 123 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + G + + V G V + ++L + N +K +++ Sbjct: 124 KQNIQEQRIYSFSFGRFEIDQHSAELTVDGNVVECSAQLFQLLLFFCENPNYVFSKEELY 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++G ++N V HI KLR+K+ + + + + R LGY Sbjct: 184 EKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 230 >gi|156740374|ref|YP_001430503.1| two component transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156231702|gb|ABU56485.1| two component transcriptional regulator, winged helix family [Roseiflexus castenholzii DSM 13941] Length = 230 Score = 167 bits (424), Expect = 7e-40, Method: Composition-based stats. Identities = 50/227 (22%), Positives = 98/227 (43%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + +A DG ++ E L + + D+ ++ L G L Sbjct: 5 ILVVEDEEPILNLVVAYLKADGFAVHTARDGESALMLAQTLQPDLIVLDLLL--PGMDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R ++ ++ ++ + G DD + KP RE++ARV AI RR + Sbjct: 63 EICRRLQRDGGPYVLMLTARAEEVDKVVGLSVGADDYLTKPFSPRELVARVKAILRRRRH 122 Query: 122 SNNRAE-------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 ++ + +++ R+ + +G L RE +L L A G+ + Q+ Sbjct: 123 TSVASPAESALLTFRDLQIDVARREVQRRGVPVTLTAREFDLLYTLAAMPGRVFTREQLL 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 ++G D + VV+ HIS LR+KL + + + R +GY Sbjct: 183 ERVWG-HDFDGVDRVVDVHISLLRRKLEDDPTEPTLIQTVRGVGYKF 228 >gi|323701215|ref|ZP_08112890.1| two component transcriptional regulator, winged helix family [Desulfotomaculum nigrificans DSM 574] gi|323533817|gb|EGB23681.1| two component transcriptional regulator, winged helix family [Desulfotomaculum nigrificans DSM 574] Length = 229 Score = 167 bits (424), Expect = 7e-40, Method: Composition-based stats. Identities = 46/224 (20%), Positives = 99/224 (44%), Gaps = 7/224 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD ++ ++G +E E + D+ ++ + Sbjct: 7 LVVDDEEKIRQVIGIYLTNEGYRVEEAVDGEEALRKFRAESWDLIILDVM--MPKMDGIA 64 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118 + + IR S+VP+I ++ + + G DD + KP RE++AR+ A+ RR Sbjct: 65 VCQEIRRVSKVPIIMLTAKNEEVDRILGLEFGADDYMGKPFSPRELVARIKAVMRRAGTE 124 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 K + + +R+ R+ +V+ + L +E +L L G+ ++ Q+ ++ Sbjct: 125 SKKEEHILKFPGMRIDLISREIQVKEKPVTLTPKEFELLALLAKTAGRSYSREQLLEEVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 G FD + V++H+++LR KLR + + + +GY + Sbjct: 185 G-FDYYGDVRTVDTHVNRLRDKLRAAGAPNFIKTVWGVGYKFEV 227 >gi|163939018|ref|YP_001643902.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163861215|gb|ABY42274.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] Length = 233 Score = 167 bits (424), Expect = 8e-40, Method: Composition-based stats. Identities = 43/227 (18%), Positives = 84/227 (37%), Gaps = 10/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +LIDD + + +G S + S E L D+ ++ L G+ Sbjct: 6 ILLIDDETAILQLLTTILEKEGFSHITTATSAEIALSLTEQNNYDLIILDVML--PGQSG 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH------REILARVAA 114 ++ I+R + P+ ++ S + F G DD + KP + + R Sbjct: 64 FDICPILRQKTDCPIFFLTAKTSDVDKVSGFSYGADDYITKPFNPLEVVARMKAQLRRHM 123 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + G + + V G V + ++L + N +K +++ Sbjct: 124 KQNIQEQRIYSFSFGRFEIDQHSAELTVDGNVVECSAQLFQLLLFFCENPNYVFSKEELY 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++G ++N V HI KLR+K+ + + + + R LGY Sbjct: 184 EKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 230 >gi|228996291|ref|ZP_04155936.1| Two-component response regulator [Bacillus mycoides Rock3-17] gi|229003958|ref|ZP_04161764.1| Two-component response regulator [Bacillus mycoides Rock1-4] gi|228757327|gb|EEM06566.1| Two-component response regulator [Bacillus mycoides Rock1-4] gi|228763483|gb|EEM12385.1| Two-component response regulator [Bacillus mycoides Rock3-17] Length = 234 Score = 167 bits (424), Expect = 8e-40, Method: Composition-based stats. Identities = 44/227 (19%), Positives = 89/227 (39%), Gaps = 11/227 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L+DD + + +G S + S E R D+ ++ L G+ Sbjct: 7 LLVDDETAILQLLTTILQKEGFSHITTATSAEEALQFVEQNRYDLMILDVML--PGQSGF 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-------HREILARVAA 114 ++ IIR + P+ ++ S + F G DD + KP + + L R Sbjct: 65 DICPIIRQKTDCPIFFLTAKSSDLDKVSGFLYGADDYITKPFNPLEVVARMKAQLRRHMK 124 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + G +V + +V G++ + ++L + + +K +I+ Sbjct: 125 QTTQPMKETHFISFGRFQVDKHAAELQVDGKIVECSAQLFQLLLFFCEHPNYVFSKEEIY 184 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++G ++N V HI KLR+K+ + + + + R LGY Sbjct: 185 EKVWGAPAYNGDDNTVMVHIRKLREKIELDPSNPEYIKTVRGLGYKF 231 >gi|229010510|ref|ZP_04167712.1| Two-component response regulator [Bacillus mycoides DSM 2048] gi|229132011|ref|ZP_04260874.1| Two-component response regulator [Bacillus cereus BDRD-ST196] gi|229166052|ref|ZP_04293816.1| Two-component response regulator [Bacillus cereus AH621] gi|228617463|gb|EEK74524.1| Two-component response regulator [Bacillus cereus AH621] gi|228651411|gb|EEL07383.1| Two-component response regulator [Bacillus cereus BDRD-ST196] gi|228750708|gb|EEM00532.1| Two-component response regulator [Bacillus mycoides DSM 2048] Length = 233 Score = 167 bits (424), Expect = 8e-40, Method: Composition-based stats. Identities = 43/227 (18%), Positives = 84/227 (37%), Gaps = 10/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +LIDD + + +G S + S E L D+ ++ L G+ Sbjct: 6 ILLIDDETAILQLLTTILEKEGFSHITTATSAEIALSLTEQNNYDLIILDVML--PGQSG 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH------REILARVAA 114 ++ I+R + P+ ++ S + F G DD + KP + + R Sbjct: 64 FDICPILRQKTDCPIFFLTAKTSDVDKISGFSYGADDYITKPFNPLEVVARMKAQLRRHM 123 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + G + + V G V + ++L + N +K +++ Sbjct: 124 KQNIQEQRIYSFSFGRFEIDQHSAELTVDGNVVECSAQLFQLLLFFCENPNYVFSKEELY 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++G ++N V HI KLR+K+ + + + + R LGY Sbjct: 184 EKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 230 >gi|228990198|ref|ZP_04150168.1| Two-component response regulator [Bacillus pseudomycoides DSM 12442] gi|228769561|gb|EEM18154.1| Two-component response regulator [Bacillus pseudomycoides DSM 12442] Length = 234 Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats. Identities = 44/227 (19%), Positives = 88/227 (38%), Gaps = 11/227 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L+DD + + +G S + S E R D+ ++ L G+ Sbjct: 7 LLVDDETAILQLLTTILQKEGFSHITTATSAEEALQFVEQNRYDLMILDVML--PGQSGF 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-------HREILARVAA 114 ++ IIR + P+ ++ S + F G DD + KP + + L R Sbjct: 65 DICPIIRQKTDCPIFFLTAKSSDLDKVSGFLYGADDYITKPFNPLEVVARMKAQLRRHMK 124 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + G +V + +V G++ + ++L + + +K +I+ Sbjct: 125 QTTQPMKETHFLSFGRFQVDKHAAELQVDGKIVECSAQLFQLLLFFCEHPNYVFSKEEIY 184 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++G ++N V HI KLR+K+ + + + R LGY Sbjct: 185 EKVWGAPAYNGDDNTVMVHIRKLREKIELDPSNPQYIKTVRGLGYKF 231 >gi|121535090|ref|ZP_01666907.1| two component transcriptional regulator, winged helix family [Thermosinus carboxydivorans Nor1] gi|121306340|gb|EAX47265.1| two component transcriptional regulator, winged helix family [Thermosinus carboxydivorans Nor1] Length = 230 Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats. Identities = 39/226 (17%), Positives = 90/226 (39%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A +++ +G + L R D+ ++ L G L Sbjct: 5 ILIVEDEANIRELVRFNLAKEGYVVLEAEDGNAALALARRERPDLIVLDLML--PGMDGL 62 Query: 62 ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAI 115 ++ RI++ + + +I ++ + + G DD + KP RE + V Sbjct: 63 DVCRILKGSSETAGMAIIMLTAKAEEVDKIIGLELGADDYMVKPFSPRELLARIKAVLRR 122 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 +R G +++ + + L +E +L+ + + GK + Q+ Sbjct: 123 SKRDAPLAGELVVGNLKLNFSRYEAHIGKVKLELTPKEFELLKLFVTDMGKVFTREQLLD 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++G ++ + V+ HI LR KL + + + +++ R +GY Sbjct: 183 KVWG-YEYYGDTRTVDVHIRHLRAKLSIDPVLAEAIETVRGVGYRF 227 >gi|30261228|ref|NP_843605.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47526390|ref|YP_017739.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49184060|ref|YP_027312.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|65318498|ref|ZP_00391457.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bacillus anthracis str. A2012] gi|165871824|ref|ZP_02216467.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167635393|ref|ZP_02393707.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|167640233|ref|ZP_02398499.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170688103|ref|ZP_02879315.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|170707629|ref|ZP_02898081.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|177654173|ref|ZP_02936146.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190566754|ref|ZP_03019671.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|227816035|ref|YP_002816044.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|229603977|ref|YP_002865651.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|254682711|ref|ZP_05146572.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254734129|ref|ZP_05191842.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254740227|ref|ZP_05197919.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254753567|ref|ZP_05205603.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|254758664|ref|ZP_05210691.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|30254842|gb|AAP25091.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47501538|gb|AAT30214.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49177987|gb|AAT53363.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|164712401|gb|EDR17935.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167511834|gb|EDR87214.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|167529221|gb|EDR91974.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170127404|gb|EDS96279.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|170667998|gb|EDT18749.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|172080880|gb|EDT65960.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190562306|gb|EDV16274.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|227006114|gb|ACP15857.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|229268385|gb|ACQ50022.1| DNA-binding response regulator [Bacillus anthracis str. A0248] Length = 234 Score = 167 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 44/228 (19%), Positives = 86/228 (37%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +L+DD + + +G S + S E L D+ ++ L G+ Sbjct: 6 ILLVDDETAILQLLTTILEKEGFSHITTATSAEMALSLTQQNDYDLIILDVML--PGQSG 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-------HREILARVA 113 ++ IIR + P+ ++ S + F G DD + KP + + L R Sbjct: 64 FDICPIIRQKTDCPIFFLTAKTSDLDKISGFSHGADDYITKPFNPLEVVARMKAQLRRHM 123 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + + G + + V G V + ++L + N +K +I Sbjct: 124 KQVMPHEQKAHSSSFGRFEIDRYSAELTVNGRVVECSAQLFQLLLFFCENPNYVFSKEEI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + ++ ++N V HI KLR+K+ + + + + R LGY Sbjct: 184 YEKVWEAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKF 231 >gi|317132020|ref|YP_004091334.1| two component transcriptional regulator, winged helix family [Ethanoligenens harbinense YUAN-3] gi|315469999|gb|ADU26603.1| two component transcriptional regulator, winged helix family [Ethanoligenens harbinense YUAN-3] Length = 229 Score = 167 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 43/224 (19%), Positives = 89/224 (39%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + +G S+ + D+ ++ L G Sbjct: 6 ILVVDDDRNINELLRLYLEKEGYSVASTYDGVDAIKKFEDHKPDLVLLDIML--PGMDGW 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYR 117 ++ R IR S+ P+I I+ + + G DD + KP +E++AR+ Sbjct: 64 QVCREIRKKSEKPVIMITAKGETFDKVLGLELGADDYIVKPFDAKEVVARIKAVLRRYSG 123 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + V + V G++ P +E +L +L +N + + Q+ + Sbjct: 124 AENDTVKEVRYDNLVVNLTNYELRVAGQLVDAPPKELELLYHLASNPNRVYTRDQLLDEV 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +G F+ + V+ HI +LR+KL K + + +GY + Sbjct: 184 WG-FEYYGDSRTVDVHIKRLREKLEGKSDQWSLKTVWGVGYKFE 226 >gi|296133628|ref|YP_003640875.1| two component transcriptional regulator, winged helix family [Thermincola sp. JR] gi|296032206|gb|ADG82974.1| two component transcriptional regulator, winged helix family [Thermincola potens JR] Length = 236 Score = 167 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 45/230 (19%), Positives = 93/230 (40%), Gaps = 14/230 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + +G ++ + + D+ ++ L G L Sbjct: 6 ILVVDDEQYIVELIRFNLEKEGYTVITAGDGKIALEQTFREKPDLIVLDIML--PGVDGL 63 Query: 62 ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 E+ R ++ + +P+I ++ + + G DD + KP RE++AR+ A RR Sbjct: 64 EVCRTLQRDKETQLIPIIMLTAKGEEIDKVLGLELGADDYMTKPFSPRELVARIKARLRR 123 Query: 119 LKVSNNRAETGPIRV--------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + + + + G+ +E +L+ L +N GK + Sbjct: 124 NFKAQQSDNQEKENILAIGGLKIDIEKFSVYLNGQKVDFTPKEFELLKLLASNPGKVFTR 183 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + I+G +D A + V+ HI +RKK+ + G V++ R +GY Sbjct: 184 EYLLEKIWG-YDFAGDTRTVDVHIRHIRKKIEPEQGEKFVETVRGVGYKF 232 >gi|317054847|ref|YP_004103314.1| winged helix family two component transcriptional regulator [Ruminococcus albus 7] gi|315447116|gb|ADU20680.1| two component transcriptional regulator, winged helix family [Ruminococcus albus 7] Length = 234 Score = 167 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 48/225 (21%), Positives = 100/225 (44%), Gaps = 8/225 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + DG + + E ++ + D+ ++ L G + Sbjct: 7 LVVDDDKNICELLRLYLEKDGYGVILAHDGEEAVVKFNALKPDIILLDIML--PGIDGWQ 64 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR S VP+I I+ + + G DD + KP +E++AR+ A+YRR+ S Sbjct: 65 VCREIRKKSNVPIIMITAKVETFDKVLGLELGADDYIVKPFDTKEVIARIKAVYRRVGQS 124 Query: 123 NNRAETGPIRVF-----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + +E ++ + V G+V P +E +L +L +N + + Q+ + Sbjct: 125 SAESEIKEVKYDKLSVNMTRYELRVNGQVMDTPPKELELLFHLASNPNRVYTRDQLLDEV 184 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +G F+ + ++ H+ +LR+KL + + +GY + Sbjct: 185 WG-FEYYGDSRTIDVHVKRLREKLEGVSDKWALKTVWGVGYKFEV 228 >gi|221310230|ref|ZP_03592077.1| two-component response regulator [Bacillus subtilis subsp. subtilis str. 168] gi|221314553|ref|ZP_03596358.1| two-component response regulator [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319475|ref|ZP_03600769.1| two-component response regulator [Bacillus subtilis subsp. subtilis str. JH642] gi|221323751|ref|ZP_03605045.1| two-component response regulator [Bacillus subtilis subsp. subtilis str. SMY] gi|255767498|ref|NP_390193.2| two-component response regulator [Bacillus subtilis subsp. subtilis str. 168] gi|251757323|sp|P35163|RESD_BACSU RecName: Full=Transcriptional regulatory protein resD gi|225185126|emb|CAB14244.2| two-component response regulator [Bacillus subtilis subsp. subtilis str. 168] Length = 240 Score = 167 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 37/232 (15%), Positives = 85/232 (36%), Gaps = 14/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++ + +++ + + A D+ ++ G + Sbjct: 9 ILVVDDEARIRRLLRMYLERENYAIDEAENGDEAIAKGLEANYDLILLDLM--MPGTDGI 66 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112 E+ R IR P+I ++ + F++G DD + KP RE A Sbjct: 67 EVCRQIREKKATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRASQ 126 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + + N + + D G L +E +L +L K + + Sbjct: 127 TSYFNANTPTKNVLVFSHLSIDHDAHRVTADGTEVSLTPKEYELLYFLAKTPDKVYDREK 186 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN--KLGFDPVDSKRFLGYSIDW 222 + ++ ++ + V++H+ +LR+KL + + +GY + Sbjct: 187 LLKEVW-QYEFFGDLRTVDTHVKRLREKLNKVSPEAAKKIVTVWGVGYKFEV 237 >gi|163814591|ref|ZP_02205980.1| hypothetical protein COPEUT_00742 [Coprococcus eutactus ATCC 27759] gi|158450226|gb|EDP27221.1| hypothetical protein COPEUT_00742 [Coprococcus eutactus ATCC 27759] Length = 245 Score = 167 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 40/241 (16%), Positives = 80/241 (33%), Gaps = 24/241 (9%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + E S L D+ ++ L G Sbjct: 6 ILIVDDDENIAELISLYLNKECYETEIAASGTEALQLFEEYSPDLVLLDVML--PGMDGY 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH----------------- 104 ++ IR S P+I +S + + G DD + KP Sbjct: 64 QVCTEIRKTSNTPIIMLSAKGEVFDKVLGLKIGADDYIVKPFDSNELVARVGALLRRSAM 123 Query: 105 ---HREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLM 161 ++ E + V +G +P +E IL +L Sbjct: 124 TESTQKQTQNSTYDVTSADHVGTFVEYDGLVVNISNYTVTFEGHNLEMPPKELEILYFLS 183 Query: 162 ANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + + Q+ ++G ++ + V+ HI +LR+KL N + + + +GY + Sbjct: 184 SRPNQVFTREQLLDKLWG-YEYVGDTRTVDVHIKRLREKLNNNHNWS-IATVWGIGYKFE 241 Query: 222 W 222 W Sbjct: 242 W 242 >gi|89897369|ref|YP_520856.1| hypothetical protein DSY4623 [Desulfitobacterium hafniense Y51] gi|89336817|dbj|BAE86412.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 227 Score = 167 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 45/225 (20%), Positives = 94/225 (41%), Gaps = 7/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ +G +E ++ D+ ++ G Sbjct: 3 ILVVDDDERIREIVRLYLEAEGYDIEEADNGNSALEKVRKDSFDLVILDLM--MPGLDGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 + +++R +++P+I ++ + FD G DD V KP RE+ ARV Sbjct: 61 TVCKVLRKETKIPIIMLTAKGEENDRVLGFDLGADDYVVKPFSPRELSARVKAVLRRLEG 120 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + R+ V V L +E +L L N + + Q+ + ++ Sbjct: 121 EPTKEHLITYPGFTINQITREVVVDETVVKLTAKEFDLLLVLAKNPSRIFTRDQLLNTVW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDW 222 +D + V++HI++LR KL +++G D + + R +GY +W Sbjct: 181 -EYDYCGDSRTVDTHINRLRSKLESQVGLSDFIQTVRGVGYKFEW 224 >gi|227486950|ref|ZP_03917266.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867] gi|227093024|gb|EEI28336.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867] Length = 304 Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 42/220 (19%), Positives = 84/220 (38%), Gaps = 5/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + +G + D+ ++ L G + Sbjct: 83 ILVVDDDPAISEMLSIVLEAEGFDTVVVTDGAEAVATFEREQPDLILLDLML--PGMNGI 140 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + IR S VP++ ++ + +SG DD V KP +E++ARV A RR Sbjct: 141 DICKTIRRSSPVPIVMLTAKTDTIDIVLGLESGADDYVTKPFKPKELVARVRARLRRSSS 200 Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 +N + E L E +L L G+ + ++ ++G Sbjct: 201 DDNEIMQISNLTIDVPSHTVRRGNEELQLTPLEFDLLVELGRKPGQVFTREELLEKVWG- 259 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVD-SKRFLGYS 219 + A + +V H+ +LR K+ + + R +GY Sbjct: 260 YKHASDTRLVNVHVQRLRSKIETDPENPTIVLTVRGVGYK 299 >gi|212638880|ref|YP_002315400.1| transcriptional regulator of redox response ResD (REC-wHTH) [Anoxybacillus flavithermus WK1] gi|212560360|gb|ACJ33415.1| Transcriptional regulator of redox response ResD (REC-wHTH) [Anoxybacillus flavithermus WK1] Length = 244 Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 41/232 (17%), Positives = 90/232 (38%), Gaps = 14/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ + ++ + E L D+ ++ L G+ + Sbjct: 13 ILVVDDEERIRRLLRMYLEREQYVIDEAENGEEALALALENDYDLILLDLML--PGKDGI 70 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + +R P+I ++ + F++G DD + KP RE++ RV A+ RR Sbjct: 71 EVCKQLREKKATPVIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRTAN 130 Query: 122 SNNRAE---------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 S + + D G L +E +L +L + K + Q Sbjct: 131 SPYVPTDTTARDVLVFPHLTIDHDAHRVTADGHEVSLTPKEYELLHFLAKSPDKVFDREQ 190 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN--KLGFDPVDSKRFLGYSIDW 222 + ++ ++ + V++H+ +LR+KL + + +GY + Sbjct: 191 LLKEVW-HYEFFGDLRTVDTHVKRLREKLNKVSPAAAKMIVTVWGVGYKFEV 241 >gi|226310980|ref|YP_002770874.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226093928|dbj|BAH42370.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 231 Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 42/233 (18%), Positives = 91/233 (39%), Gaps = 15/233 (6%) Query: 1 MF--VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKG 57 M +++DD A + G + + + S + D ++ L G Sbjct: 1 MIKVLVVDDEASIVKLLQFNLEKSGFQVVTAFDGKQALEVVKSEQPDFIILDLMLPKMDG 60 Query: 58 EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------L 109 V + R + P++ ++ + + G DD + KP RE+ Sbjct: 61 MDVCKTLRQ--ERNNTPILMLTAKDDELDKILGLELGADDYLTKPFSPREVIARVKAILR 118 Query: 110 ARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 + G IR++ + + + L +E +L YL +++G+ + Sbjct: 119 RFQNTPEATTGHQEVLLQFGDIRIYPEKYEVFCKDVKVELTPKEFELLNYLASHQGRVLT 178 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 + Q+ +A++ +D + +V+ H+S LR+KL + + + R LGY ++ Sbjct: 179 RDQLLNAVW-NYDFIGDSRIVDVHVSHLREKLEDDTKNPKYIKTVRGLGYKLE 230 >gi|410141|gb|AAA67497.1| ORFX17 [Bacillus subtilis subsp. subtilis str. 168] Length = 240 Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 36/232 (15%), Positives = 84/232 (36%), Gaps = 14/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++ + +++ + + A D+ ++ G + Sbjct: 9 ILVVDDEARIRRLLRMYLERENYAIDEAENGDEAIAKGLEANYDLILLDLM--MPGTDGI 66 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112 E+ R IR P+I ++ + F++G DD + KP RE A Sbjct: 67 EVCRQIREKKATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRASQ 126 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + + N + + D G L + +L +L K + + Sbjct: 127 TSYFNANTPTKNVLVFSHLSIDHDAHRVTADGTEVSLTPKVYELLYFLAKTPDKVYDREK 186 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN--KLGFDPVDSKRFLGYSIDW 222 + ++ ++ + V++H+ +LR+KL + + +GY + Sbjct: 187 LLKEVW-QYEFFGDLRTVDTHVKRLREKLNKVSPEAAKKIVTVWGVGYKFEV 237 >gi|260892897|ref|YP_003238994.1| two component transcriptional regulator, winged helix family [Ammonifex degensii KC4] gi|260865038|gb|ACX52144.1| two component transcriptional regulator, winged helix family [Ammonifex degensii KC4] Length = 231 Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 44/222 (19%), Positives = 89/222 (40%), Gaps = 5/222 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61 +++DD ++ +G + + R DV ++ L G V Sbjct: 5 LVVDDEEHIQKLLHFTLSKEGFQVLVAADGPQALEMARQHRPDVIILDLMLPALDGFTVC 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119 EL R + ++P+I +S + + + D G DD V KP RE+ + R+ Sbjct: 65 ELLRRDPSLKEIPVIVLSARGTEEDKVRGLDIGADDYVTKPFSPRELAARVKAQLRRRQS 124 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + GP+ + + + L +E +L +L + G+ ++ Q+ I+G Sbjct: 125 QAEREKLVYGPLVIDRERYAVAWKEHWQYLAPKEFELLYFLATHPGRVFSREQLLDQIWG 184 Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 +D V+ H+ +R+KL +++ R +GY Sbjct: 185 -YDYLGGPRTVDVHVRYIRQKLEQMPGAPQLIETVRGVGYRF 225 >gi|89893567|ref|YP_517054.1| hypothetical protein DSY0821 [Desulfitobacterium hafniense Y51] gi|89333015|dbj|BAE82610.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 227 Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 45/226 (19%), Positives = 97/226 (42%), Gaps = 7/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ +G + + + D+ ++ + G Sbjct: 3 ILVVDDDERIREIVRLYLEAEGFETDEAENGNIALEKVRNGTFDLIILDLMI--PGLDGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 + +++R +Q+P+I ++ + FD G DD + KP RE+ ARV Sbjct: 61 TVCKVLRKETQIPIIMLTAKGEENDRILGFDLGADDYIVKPFSPRELCARVKAVLRRLDG 120 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + R+ V+G+ L +E +L L N G+ + Q+ +++ Sbjct: 121 ETSKEHLITFTGFTINQITREIMVEGKEVKLTTKEFDLLLVLAKNPGQIFTRDQLLDSVW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDWN 223 FD + V++HI++LR K +++G D + + R +GY ++N Sbjct: 181 D-FDYCGDSRTVDTHINRLRSKFDSQVGFSDFIQTVRGVGYKFEYN 225 >gi|295094559|emb|CBK83650.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Coprococcus sp. ART55/1] Length = 244 Score = 166 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 41/241 (17%), Positives = 81/241 (33%), Gaps = 24/241 (9%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + E S L D+ ++ L G Sbjct: 6 ILIVDDDENIAELISLYLNKECYETEIAASGTEALQLFEEYSPDLVLLDVML--PGMDGY 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH---------------- 105 ++ IR S P+I +S + + G DD + KP Sbjct: 64 QVCTEIRKTSNTPIIMLSAKGEVFDKVLGLKIGADDYIVKPFDSNELVARVGALLRRSAM 123 Query: 106 ----REILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLM 161 ++ A E + V +G +P +E IL +L Sbjct: 124 TESAQKQPQSAAYDVTSADHVGTFVEYDGLVVNISNYTVTFEGHNLEMPPKELEILYFLA 183 Query: 162 ANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + + Q+ ++G ++ + V+ HI +LR+KL N + + + +GY + Sbjct: 184 SRPNQVFTREQLLDKLWG-YEYVGDTRTVDVHIKRLREKLNNNHNWS-IATVWGIGYKFE 241 Query: 222 W 222 W Sbjct: 242 W 242 >gi|83588943|ref|YP_428952.1| two component transcriptional regulator [Moorella thermoacetica ATCC 39073] gi|83571857|gb|ABC18409.1| two component transcriptional regulator, winged helix family [Moorella thermoacetica ATCC 39073] Length = 229 Score = 166 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 42/224 (18%), Positives = 90/224 (40%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + G + + + + D+ ++ L Sbjct: 7 ILVVDDEPAIVELVKFNLEQAGFTTITASDGAEALQKAEAEKPDLIILDVML--PKVDGF 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +RA +P++ ++ + + G DD + KP RE++ARV AI RR+ Sbjct: 65 EVCRSLRARGSMPILMLTARREEVDRVLGLELGADDYLTKPFSPRELVARVRAILRRVAE 124 Query: 122 SNNRAETGPIRVF----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + V+G+ L +E ++L+ L NRG+ ++ + + Sbjct: 125 KQQQNDGIITVGDLVINPASHLVTVRGKPVDLTLKEYQLLQLLAENRGRVFSREALLERL 184 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + + + ++ HI LR+K+ N + + R +GY Sbjct: 185 W-EGEYYGDTRTIDVHIRHLREKIEANPSNPRYIITVRGVGYKF 227 >gi|309789803|ref|ZP_07684382.1| two component transcriptional regulator, winged helix family [Oscillochloris trichoides DG6] gi|308228107|gb|EFO81756.1| two component transcriptional regulator, winged helix family [Oscillochloris trichoides DG6] Length = 232 Score = 166 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 42/225 (18%), Positives = 86/225 (38%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D + +G +++ L + R D+ ++ L G + Sbjct: 6 ILVVDDEQPIVDLVASYLAAEGFAVQRAYDGPSALTLARACRPDLVILDVML--PGLDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115 E+ R + + V ++ ++ L G DD + KP RE+ + R Sbjct: 64 EVCRRLHQETAVYVLMLTARTDEVDKLIGLSVGADDYLTKPFSPRELVARVKAILRRTRA 123 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + + R+ + L RE +L L + G+ + ++ Sbjct: 124 PAGKTNERPSLIFDSLSIDPERREVKRGELQIELTPREFDLLYALASYPGRVFTREELLQ 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G D A + VV+ H+ LR+KL + V + R +GY Sbjct: 184 RVWGA-DFAGIDRVVDVHVGTLRRKLEDDGDASYVQTVRGVGYKF 227 >gi|317121610|ref|YP_004101613.1| transcriptional regulator [Thermaerobacter marianensis DSM 12885] gi|315591590|gb|ADU50886.1| two component transcriptional regulator, winged helix family [Thermaerobacter marianensis DSM 12885] Length = 224 Score = 166 bits (420), Expect = 2e-39, Method: Composition-based stats. Identities = 43/221 (19%), Positives = 93/221 (42%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V +G +++ S E + D+ ++ G + Sbjct: 4 ILVVDDDPSVTSLLKRGLAYEGFAVDTAASGEEALKIAREQPPDLVILDIM--MPGMDGM 61 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +R A ++P++ ++ + + ++G DD V KP ++ARV A+ RR + Sbjct: 62 EVLRRLRAADPELPVLFLTARDAPADQVRGLEAGADDYVVKPFTFEVLVARVRALLRRRQ 121 Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + + L E ++L M + + + K Q+ ++G Sbjct: 122 AERPQVLRFADLVLDTGTYTARRGDREIHLTALEFKLLHEFMLHPRQVLNKDQLLERVWG 181 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D NV+E ++ +LR+KL + + + R +GY + Sbjct: 182 -YDFGGNANVLEVYVKQLRQKLEAEGEPRLIHTVRGVGYVL 221 >gi|147678166|ref|YP_001212381.1| response regulator [Pelotomaculum thermopropionicum SI] gi|146274263|dbj|BAF60012.1| response regulator [Pelotomaculum thermopropionicum SI] Length = 239 Score = 165 bits (419), Expect = 3e-39, Method: Composition-based stats. Identities = 48/232 (20%), Positives = 90/232 (38%), Gaps = 16/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + +G + L + R D+ ++ L G L Sbjct: 4 ILVVDDEKNILELVRFNLEREGYQVLTALDGPQGLELARAERPDLIVLDVML--PGMNGL 61 Query: 62 ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------IL 109 E+ R + A +P+I +S + + G DD + KP RE Sbjct: 62 EVCREMHRDAATKNIPVIMLSARAEELDRVLGLEMGADDYITKPFSPRELVARIKARLRR 121 Query: 110 ARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 + R V R + G + + + V G L +E +L +L G+ + Sbjct: 122 IQKEEGREREAVPGGRLDFGRLVIDEEKFAVYVDGVKVDLTPKEFELLRFLARQPGRVFS 181 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220 + Q+ ++G +D A + V+ HI +R+KL D P+++ R +GY Sbjct: 182 REQLLEQVWG-YDYAGDSRTVDVHIRHIRQKLGRLSESDQPIETVRGVGYCF 232 >gi|269219051|ref|ZP_06162905.1| DNA-binding response regulator [Actinomyces sp. oral taxon 848 str. F0332] gi|269212162|gb|EEZ78502.1| DNA-binding response regulator [Actinomyces sp. oral taxon 848 str. F0332] Length = 227 Score = 165 bits (419), Expect = 3e-39, Method: Composition-based stats. Identities = 48/219 (21%), Positives = 92/219 (42%), Gaps = 3/219 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + L +G + + L + R D+ ++ L G + Sbjct: 5 ILVVDDDPSIAEMLALLLESEGFEVSVCATGNNALPLFRADRPDLVLLDVML--PGLDGV 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R+IR S VP+I +S + ++G DD V KP + +LARV A RR + Sbjct: 63 SVCRLIREESDVPIIMMSARTDSVDVIAGLEAGADDYVTKPFENSVLLARVKARLRRQEP 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + + + G+V L E +L L + ++ ++ ++G Sbjct: 123 EHEVLRVSDLTIDLKAHQVQRAGKVLHLTPLEFELLSVLARKPWQVFSREELLEQVWGYR 182 Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219 + + VV HI +LR K+ + + V + R +GY Sbjct: 183 QSSHDPRVVNVHIQRLRSKVEHDPDHPEVVLTVRGVGYR 221 >gi|57235029|ref|YP_180885.1| DNA-binding response regulator [Dehalococcoides ethenogenes 195] gi|57225477|gb|AAW40534.1| DNA-binding response regulator [Dehalococcoides ethenogenes 195] Length = 230 Score = 165 bits (419), Expect = 3e-39, Method: Composition-based stats. Identities = 44/228 (19%), Positives = 93/228 (40%), Gaps = 10/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A +++ +G LE + + + ++ L G Sbjct: 6 ILVVEDDATLRELLCYNLAKEGYQLECAEDGLKALGMYRRFKPSLVILDVML--PGMDGF 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH------REILARVAAI 115 EL R+IRA S VP++ ++ S ++ + G DD ++KP L R + + Sbjct: 64 ELCRLIRAESSVPILMLTARSSETDKVNGLEVGADDYLSKPFGMKELLARMRALLRRSQM 123 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + + +F + GE +E +L +++ NR + ++ Q+ Sbjct: 124 QNSQPEPVSGLKIDNLEIFFERHLVMRDGEALDFSPKEFDLLSFMVQNRCRVFSREQLLE 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 ++G +D V+ HIS LR+K+ + + + R GY + Sbjct: 184 KVWG-YDYPGGTRTVDVHISWLRQKIETDPSRPRHLITVRGTGYKFEE 230 >gi|325681015|ref|ZP_08160547.1| transcriptional regulatory protein ResD [Ruminococcus albus 8] gi|324107244|gb|EGC01528.1| transcriptional regulatory protein ResD [Ruminococcus albus 8] Length = 233 Score = 165 bits (419), Expect = 3e-39, Method: Composition-based stats. Identities = 48/225 (21%), Positives = 100/225 (44%), Gaps = 8/225 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + DG + + E ++ + D+ ++ L G + Sbjct: 7 LVVDDDKNICELLRLYLEKDGYGVILAHDGEEAVVKFNALKPDIILLDIML--PGIDGWQ 64 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR S VP+I I+ + + G DD + KP +E++AR+ A+YRR+ S Sbjct: 65 VCREIRKKSNVPIIMITAKVETFDKVLGLELGADDYIVKPFDTKEVIARIKAVYRRVGQS 124 Query: 123 NNRAETGPIRVF-----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + +E ++ + V G+V P +E +L +L +N + + Q+ + Sbjct: 125 SAESEIKEVKYDKLSVNMTRYELRVDGKVLDTPPKELELLFHLASNPNRVYTRDQLLDEV 184 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +G F+ + ++ H+ +LR+KL + + +GY + Sbjct: 185 WG-FEYYGDSRTIDVHVKRLREKLEGVSDKWALKTVWGVGYKFEV 228 >gi|256786760|ref|ZP_05525191.1| response regulator [Streptomyces lividans TK24] gi|289770653|ref|ZP_06530031.1| response regulator [Streptomyces lividans TK24] gi|289700852|gb|EFD68281.1| response regulator [Streptomyces lividans TK24] Length = 280 Score = 165 bits (419), Expect = 3e-39, Method: Composition-based stats. Identities = 42/223 (18%), Positives = 81/223 (36%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V + G ++ + R D+ ++ L G L Sbjct: 55 ILVVDDDPTVAEVVAGYLDRAGYRVDRAGDGPEALARAAGHRPDLVVLDLML--PGMDGL 112 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--ILARVAAIYRRL 119 E+ R +R VP+I ++ + + G DD V KP RE + R Sbjct: 113 EVCRRLRGQGPVPVIMLTARGDEDDRVLGLEVGADDYVTKPFSPRELVLRVESVLRRTRP 172 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + V R G L RE +L + + + G+ A+ ++ ++G Sbjct: 173 APAPRPPSAAGLTVDPAARRATKDGTELALTLREFDLLVFFLRHPGRAFAREELMREVWG 232 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221 + + V H+ +LR K+ + + + +GY D Sbjct: 233 WD--FGDLSTVTVHVRRLRGKVEDDPARPRLIQTVWGVGYRFD 273 >gi|154686557|ref|YP_001421718.1| hypothetical protein RBAM_021260 [Bacillus amyloliquefaciens FZB42] gi|308174102|ref|YP_003920807.1| two-component response regulator [Bacillus amyloliquefaciens DSM 7] gi|154352408|gb|ABS74487.1| ResD [Bacillus amyloliquefaciens FZB42] gi|307606966|emb|CBI43337.1| two-component response regulator [Bacillus amyloliquefaciens DSM 7] gi|328552769|gb|AEB23261.1| two-component response regulator [Bacillus amyloliquefaciens TA208] gi|328912433|gb|AEB64029.1| Transcriptional regulatory protein resD [Bacillus amyloliquefaciens LL3] Length = 240 Score = 165 bits (419), Expect = 3e-39, Method: Composition-based stats. Identities = 36/232 (15%), Positives = 85/232 (36%), Gaps = 14/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++ + +E + + + ++ D+ ++ G + Sbjct: 9 ILVVDDEARIRRLLRMYLERENYVIEEAENGDEAIKMGLASDYDLVLLDLM--MPGTDGI 66 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112 E+ R +R P+I ++ + F++G DD + KP RE A Sbjct: 67 EVCRQLREKKATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRASQ 126 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + N + + D G L +E +L +L K + + Sbjct: 127 TSYLTANTPTKNVLVFSHLSIDHDAHRVTADGTEVSLTPKEYELLYFLAKTPDKVYDREK 186 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN--KLGFDPVDSKRFLGYSIDW 222 + ++ ++ + V++H+ +LR+KL + + +GY + Sbjct: 187 LLKEVW-QYEFFGDLRTVDTHVKRLREKLNKVSPGAAKKIVTVWGVGYKFEV 237 >gi|219850153|ref|YP_002464586.1| winged helix family two component transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219544412|gb|ACL26150.1| two component transcriptional regulator, winged helix family [Chloroflexus aggregans DSM 9485] Length = 231 Score = 165 bits (419), Expect = 3e-39, Method: Composition-based stats. Identities = 46/225 (20%), Positives = 92/225 (40%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A +++ G + + DV ++ L L Sbjct: 6 ILIVDDEARLRELVRRYLEQAGFRVVQAADGVTALEQARAWTPDVVILDIML--PVLDGL 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116 + R +R S ++ ++ + ++G DD + KP RE++AR + Sbjct: 64 AVCRRLRTFSDAYILMLTARAEESDRVTGLETGADDYLTKPFAPRELVARVRALLRRPRH 123 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + ++ G + + + G++ L E +L + A G+ ++TQ+ Sbjct: 124 TEVSMPSSLIHYGGLVIDPVAHTVALDGQLLTLTPIEYALLSVMAAAPGRVFSRTQLLDR 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 I+G D +E+VVE HI+ LRKKL + + + R +GY Sbjct: 184 IWG-HDYFGDEHVVEVHITNLRKKLGDNPNRPQYIFTVRGIGYRF 227 >gi|152974657|ref|YP_001374174.1| two component transcriptional regulator [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152023409|gb|ABS21179.1| two component transcriptional regulator, winged helix family [Bacillus cytotoxicus NVH 391-98] Length = 235 Score = 165 bits (418), Expect = 3e-39, Method: Composition-based stats. Identities = 49/228 (21%), Positives = 92/228 (40%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +L+DD + + + +G S + S E L D+ ++ L G+ Sbjct: 6 ILLVDDESAILQLLTTILQKEGFSHITTATSAEEALLLVEDHSYDLMILDVML--PGQSG 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ IIR + P+ ++ S + F G DD + KP + E++AR+ A RR Sbjct: 64 FDICPIIRQKTDCPIFFLTAKTSDLDKVSGFLYGADDYITKPFNPLEVVARMKAQLRRHL 123 Query: 121 VSNN-------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 G +V + +V G + + ++L + + +K +I Sbjct: 124 KYTPKTIQTSDIYSFGRFQVDKHAAELKVDGNIVECSAQLFQLLLFFCEHPNYVFSKEEI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + ++G ++N V HI KLR+K+ N + + R LGY Sbjct: 184 YEKVWGAPAYNGDDNTVMVHIRKLREKIEFNPSNPQYIKTVRGLGYKF 231 >gi|154496344|ref|ZP_02035040.1| hypothetical protein BACCAP_00632 [Bacteroides capillosus ATCC 29799] gi|150274427|gb|EDN01504.1| hypothetical protein BACCAP_00632 [Bacteroides capillosus ATCC 29799] Length = 230 Score = 165 bits (418), Expect = 4e-39, Method: Composition-based stats. Identities = 44/225 (19%), Positives = 89/225 (39%), Gaps = 8/225 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D A + + +G L S D+ ++ L Sbjct: 6 LIVEDEANIAELLHLYLEKEGYETAVAPDGGKGVELFRSFHPDLVLLDIML--PVMDGWS 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + IR + P+I ++ + + + G DD + KP +E+LAR+ A+ RR Sbjct: 64 VLKKIRESDKTPVIMLTAKGETEDKVHGLEGGADDYIVKPFEMKEVLARIHAVLRRFGAE 123 Query: 123 NNRAETGPIRVFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + D + V G+ P +E +L +L A+ + + Q+ + Sbjct: 124 EEGSGEKKLSFDKLVINLDSYELLVDGKRVDTPPKELELLYHLAASPNRVFTRNQLLDEV 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +G FD + V+ HI +LR+KL + + +GY + Sbjct: 184 WG-FDYFGDSRTVDVHIKRLREKLEGVSEQWSLKTVWGVGYKFEV 227 >gi|125973803|ref|YP_001037713.1| two component transcriptional regulator [Clostridium thermocellum ATCC 27405] gi|125714028|gb|ABN52520.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum ATCC 27405] gi|316940004|gb|ADU74038.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 1313] Length = 228 Score = 165 bits (418), Expect = 4e-39, Method: Composition-based stats. Identities = 44/223 (19%), Positives = 94/223 (42%), Gaps = 6/223 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++IDD + + +G + + + + ++ ++ L G + Sbjct: 8 LVIDDDVNICELIRLYMEKEGFEVVTVYNGSKALEVFRNEAPNIVILDIML--PGADGWQ 65 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR S +P+I +S + + G DD + KP +E++ARV A+ RR + Sbjct: 66 VCREIRKISNIPVIMLSAKGETFDKVLGLELGADDYLVKPFEPKELVARVKAVLRRYEHK 125 Query: 123 NNRAETGPIRVFSDGRDPEV---QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++ + + G+ P +E +L +L +N K + Q+ ++G Sbjct: 126 DSDVQEIVYPNLIINKTNYTLKVNGKEMEFPPKELELLYFLASNPNKVFTREQLIEQVWG 185 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D + V+ HI +LR+KL ++ + + +GY + Sbjct: 186 -YDFYGDSRTVDVHIKRLREKLDSEGQNWQLKTVWGVGYKFEV 227 >gi|323701350|ref|ZP_08113024.1| two component transcriptional regulator, winged helix family [Desulfotomaculum nigrificans DSM 574] gi|323533609|gb|EGB23474.1| two component transcriptional regulator, winged helix family [Desulfotomaculum nigrificans DSM 574] Length = 235 Score = 165 bits (418), Expect = 4e-39, Method: Composition-based stats. Identities = 44/227 (19%), Positives = 90/227 (39%), Gaps = 9/227 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +++DD + + D + E L D+ ++ L G +V Sbjct: 4 ILVVDDETNILELIKYNLEKDNHRVITALDGEEGLRLAQQEPPDLIILDVMLPKVDGLEV 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAA 114 R + S++P++ +S + + G DD + KP RE+ R A Sbjct: 64 CRCLRSHPSTSRLPILMVSARRETVDHVVGLEMGADDYITKPFSPRELAARVKANLRRAQ 123 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + + + G + + D + V+G +E ++L LM++ GK + + Sbjct: 124 YDKLVASNTSLIRVGGLEMNLDKFEVHVEGTPVNFTPKEFKLLHVLMSHPGKVFTREMLL 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++G FD V+ V+ HI +R+K+ + + + R +GY Sbjct: 184 EQVWG-FDNNVDTRTVDVHIRYVRQKIEVDPGNPKYILTVRGVGYKF 229 >gi|114152683|gb|ABI52588.1| two-component response regulator [Bacillus cytotoxicus] Length = 235 Score = 165 bits (418), Expect = 4e-39, Method: Composition-based stats. Identities = 48/228 (21%), Positives = 92/228 (40%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +L+DD + + + +G S + S E L D+ ++ L G+ Sbjct: 6 ILLVDDESAILQLLTTILQKEGFSHITTATSAEEALLLVEDHSYDLMILDVML--PGQSG 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ IIR + P+ ++ S + F G DD + KP + E++AR+ A RR Sbjct: 64 FDICPIIRQKTDCPIFFLTAKTSDLDKVSGFLYGADDYITKPFNPLEVVARMKAQLRRHL 123 Query: 121 VSNN-------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 G ++ + +V G + + ++L + + +K +I Sbjct: 124 KYTPKTIQTSDIYSFGRFQIDKHAAELKVDGNIVECSAQLFQLLLFFCEHPNYVFSKEEI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + ++G ++N V HI KLR+K+ N + + R LGY Sbjct: 184 YEKVWGAPAYNGDDNTVMVHIRKLREKIEFNPSNPQYIKTVRGLGYKF 231 >gi|147676580|ref|YP_001210795.1| hypothetical protein PTH_0245 [Pelotomaculum thermopropionicum SI] gi|146272677|dbj|BAF58426.1| hypothetical protein [Pelotomaculum thermopropionicum SI] Length = 357 Score = 165 bits (418), Expect = 4e-39, Method: Composition-based stats. Identities = 35/231 (15%), Positives = 90/231 (38%), Gaps = 12/231 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ ++G ++ L + + D+ ++ G Sbjct: 129 ILVVDDERKIREVVRMYLENEGFAVGEATDGREALNLLTGGKWDLLILDLM--MPGVDGW 186 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARVA 113 + R +R + +P+I ++ + + + G DD V KP RE + Sbjct: 187 SVCREVRKTTALPIIMLTARDAEVDRIVGLELGADDYVVKPFSPRELVARVKAVLRRSQI 246 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 A + + + R V + L +E +L + + + + ++ Sbjct: 247 APPAAQDGKPVVLNYPGLSINPESRLVLVNEQPVNLTPKEYDMLYLMARSPSRTFTREEL 306 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDWN 223 +++G +D + V++H+++LR KL+ G+ + + +GY + + Sbjct: 307 IESVWG-YDYFGDTRTVDTHVNRLRDKLQKASGYRSYISTVWGVGYKFEVD 356 >gi|147678005|ref|YP_001212220.1| response regulator [Pelotomaculum thermopropionicum SI] gi|146274102|dbj|BAF59851.1| response regulator [Pelotomaculum thermopropionicum SI] Length = 233 Score = 165 bits (418), Expect = 4e-39, Method: Composition-based stats. Identities = 48/228 (21%), Positives = 91/228 (39%), Gaps = 9/228 (3%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEK 59 + + +DD A + + +G + + + + D+ ++ L G Sbjct: 3 LILAVDDEANILELLKFNLSKEGFQVISATNGPDAVKIAREKKPDLIILDVMLPEMDGYD 62 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 VL+ + R + P+I +S + + G DD + KP RE++ARV A RR Sbjct: 63 VLQKLKADRETAVTPVIILSAKTEEVDKVLGLELGADDYITKPFSPREVVARVKARLRRK 122 Query: 120 KVSNNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + E + + + G+ L +E +L L N G+ + + Sbjct: 123 SAPPAKQEARKEIRIGSLVIRPEKYEAVLDGKKLELTPKEFELLHLLADNPGRVFTRDIL 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 I+G +D A E V+ HI LR+K+ + +++ R +GY Sbjct: 183 LEKIWG-YDHARETRTVDVHIRYLRQKIEKDPAKPKYIETVRSVGYRF 229 >gi|311030763|ref|ZP_07708853.1| two component transcriptional regulator [Bacillus sp. m3-13] Length = 239 Score = 165 bits (418), Expect = 4e-39, Method: Composition-based stats. Identities = 35/232 (15%), Positives = 84/232 (36%), Gaps = 14/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ + +E ++ + DV ++ G + Sbjct: 7 ILVVDDEDRIRRLLKMYLERENYVIEEADNGNTALEMALEKEYDVILLDVM--MPGMDGM 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112 E+ + IR P+I ++ + F+ G DD + KP RE + Sbjct: 65 EVCKEIREKKATPIIMLTAKGEETNRVQGFEMGTDDYIVKPFSPREVVLRVKALLRRSSS 124 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + + + +D +G+ L +E +L +L + K + Q Sbjct: 125 TTFLTTETTTKDVIVFPHLTIDNDAHRVTSEGKEINLTPKEYELLYFLAKSPDKVFDREQ 184 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF--DPVDSKRFLGYSIDW 222 + ++ ++ + V++H+ +LR+KL + + +GY + Sbjct: 185 LLKEVW-QYEFFGDLRTVDTHVKRLREKLNKVSEPASKMIVTVWGVGYKFEV 235 >gi|288553693|ref|YP_003425628.1| two-component response regulator [Bacillus pseudofirmus OF4] gi|288544853|gb|ADC48736.1| two-component response regulator involved in phosphate regulation [Bacillus pseudofirmus OF4] Length = 241 Score = 165 bits (418), Expect = 4e-39, Method: Composition-based stats. Identities = 38/235 (16%), Positives = 93/235 (39%), Gaps = 17/235 (7%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + G + + E L D+ ++ L L Sbjct: 5 ILVVDDEESIATLLQFNLEQSGFEVTVASDGEEGLALAKDEPFDLLILDLML--PKIDGL 62 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------------ 108 ++ + +R + ++ P++ ++ + + G DD + KP RE+ Sbjct: 63 DICKQLRQNKKMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVRAILRRSA 122 Query: 109 LARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 + + + + G + +F + + V + L +E + YL ++G+ + Sbjct: 123 QLSETSEAANNEENGRVIKIGDVEIFPENYEVLVHKKALELTPKEFELFLYLANHKGRVL 182 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 + Q+ +A++ ++ + +V+ HIS LR+K+ + + R LGY ++ Sbjct: 183 TRDQLLNAVW-NYEFVGDTRIVDVHISHLREKIEPNTKKPVYIKTVRGLGYKLEE 236 >gi|317128535|ref|YP_004094817.1| two component transcriptional regulator, winged helix family [Bacillus cellulosilyticus DSM 2522] gi|315473483|gb|ADU30086.1| two component transcriptional regulator, winged helix family [Bacillus cellulosilyticus DSM 2522] Length = 238 Score = 165 bits (417), Expect = 4e-39, Method: Composition-based stats. Identities = 38/231 (16%), Positives = 87/231 (37%), Gaps = 14/231 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ + ++ + E + D+ ++ G + Sbjct: 7 ILVVDDEERIRRLLKMYLEREDYDVDDAENGEKALKMALENEYDLIVLDLM--MPGIDGI 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112 E+ IR H P+I ++ + F++G DD + KP RE + Sbjct: 65 EVCEEIRKHKATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRSSS 124 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + + + + +D G+ L +E +L YL + K A+ Q Sbjct: 125 TKFLQTETTTKDVLVFPHLTIDNDAHRITADGKHINLTPKEYELLHYLAQSPDKVFAREQ 184 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN--KLGFDPVDSKRFLGYSID 221 + ++ ++ + V++HI +LR+KL + + + +GY + Sbjct: 185 LLKDVW-NYEFFGDLRTVDTHIKRLREKLNKVSPEAANMISTVWGVGYKFE 234 >gi|172057053|ref|YP_001813513.1| two component transcriptional regulator [Exiguobacterium sibiricum 255-15] gi|171989574|gb|ACB60496.1| two component transcriptional regulator, winged helix family [Exiguobacterium sibiricum 255-15] Length = 238 Score = 165 bits (417), Expect = 4e-39, Method: Composition-based stats. Identities = 34/233 (14%), Positives = 86/233 (36%), Gaps = 14/233 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ + ++E ++ E + DV ++ + Sbjct: 7 ILVVDDEERIRRLLKMYLERENFTIEEADNGETALEMALETEYDVILLDLM--MPKLDGM 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112 ++ +R P++ ++ + F+ G DD + KP RE A Sbjct: 65 QVCEELRKTKATPIVMLTAKGEETNRVHGFEMGADDYIVKPFSPREVVLRVKAILRRASA 124 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + + + +D V+ + L +E +L +L K ++ Q Sbjct: 125 TKFLHTDAKTKDVIVFPHLTIDNDAHRVTVESQEVNLTPKEYELLYFLAKQTDKVFSREQ 184 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSIDWN 223 + ++ ++ + V++H+ +LR+KL + + + +GY + N Sbjct: 185 LLKEVW-NYEFFGDLRTVDTHVKRLREKLNRLSPNAAQMITTVWGVGYKFENN 236 >gi|260892544|ref|YP_003238641.1| two component transcriptional regulator, winged helix family [Ammonifex degensii KC4] gi|260864685|gb|ACX51791.1| two component transcriptional regulator, winged helix family [Ammonifex degensii KC4] Length = 236 Score = 165 bits (417), Expect = 5e-39, Method: Composition-based stats. Identities = 50/219 (22%), Positives = 99/219 (45%), Gaps = 4/219 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + + G + S + + D+ ++ L G E Sbjct: 11 LVVEDDRNIAELVSLYLEKHGFKVLKAASGAEALEILKNETVDLVVLDLML--PGIDGWE 68 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLKV 121 + R IR++SQ+P+I ++ LQ L F+ G DD V KP +E++ARV A+ R + Sbjct: 69 VCRQIRSNSQLPVIMLTAKGELQDKLQGFELGADDYVVKPFDPQELIARVKAVLRRAGET 128 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 R + + + + EV G L +RE +L +L ++ G+ + + ++G F Sbjct: 129 KPRRVDLPDLTIDLESYVVEVAGRKVELTKRETELLYFLASHPGRVFTREFLLQRVWG-F 187 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + V+ H+++LR+KL + + +GY + Sbjct: 188 EFPGNTRTVDVHVNRLREKLDGLPKSWHIKTVWGVGYKL 226 >gi|239916919|ref|YP_002956477.1| PhoP-like protein [Micrococcus luteus NCTC 2665] gi|281414626|ref|ZP_06246368.1| PhoP-like protein [Micrococcus luteus NCTC 2665] gi|289706878|ref|ZP_06503219.1| response regulator receiver domain protein [Micrococcus luteus SK58] gi|239838126|gb|ACS29923.1| PhoP-like protein [Micrococcus luteus NCTC 2665] gi|289556428|gb|EFD49778.1| response regulator receiver domain protein [Micrococcus luteus SK58] Length = 226 Score = 165 bits (417), Expect = 5e-39, Method: Composition-based stats. Identities = 53/225 (23%), Positives = 95/225 (42%), Gaps = 8/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D D L +G + + D+ ++ L G Sbjct: 4 ILIVEDEESFSDPLSYLLEKEGFEVTVAADGNEALSVFERDSADLILLDLML--PGMSGT 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R S VP+I ++ S + + G DD V KP RE++ARV A+ RR Sbjct: 62 EVCRQVRQRSNVPVIMLTAKDSEIDKVVGLELGADDYVTKPYSSRELVARVRAVLRRQGE 121 Query: 122 SNNRAETG----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 P+R+ + V GE LP +E +LE L+ N G+ + + Q+ + Sbjct: 122 QEEPMSATISAGPVRMDVERHVVSVDGEQVSLPLKEFELLEMLLRNAGRVLTRGQLIDRV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 +G D + ++ H+ +LR K+ + + + R LGY + Sbjct: 182 WG-SDYVGDTKTLDVHVKRLRSKIEPDPSSPRYLVTVRGLGYKFE 225 >gi|85859021|ref|YP_461223.1| response regulator [Syntrophus aciditrophicus SB] gi|85722112|gb|ABC77055.1| response regulator with a winged-helix DNA-binding domain [Syntrophus aciditrophicus SB] Length = 245 Score = 165 bits (417), Expect = 5e-39, Method: Composition-based stats. Identities = 45/226 (19%), Positives = 89/226 (39%), Gaps = 8/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +++DD + + +G ++ E + + D+ ++ L G G + Sbjct: 17 ILVVDDEKDIVELLTFNLEKEGFAVTQAFDGEEALKTIRTNKPDLVILDLMLPGVSGLDI 76 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAI 115 R +P+I ++ + + G DD + KP + RE++AR + Sbjct: 77 CRQVRRNEETETLPVIMLTAKGEPLDKVVGLEIGADDYITKPFNVRELVARVRAVLRRSS 136 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 R + S + V V G+ L E ++L L G+ ++ Q+ Sbjct: 137 QRPKEASEGTFTFQGLHVDYRTYQVSVDGKKIELGPTEIKLLRCLTRQPGRVFSRDQLLD 196 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 A++G + VE V+ HIS+LR + +K + + R +GY Sbjct: 197 AVWGE-EAFVEPRTVDVHISRLRADIEQDKEKPKYILTVRGIGYKF 241 >gi|167465147|ref|ZP_02330236.1| two-component response regulator [Paenibacillus larvae subsp. larvae BRL-230010] gi|322381788|ref|ZP_08055742.1| two-component response regulator-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154176|gb|EFX46498.1| two-component response regulator-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 237 Score = 165 bits (417), Expect = 5e-39, Method: Composition-based stats. Identities = 43/232 (18%), Positives = 89/232 (38%), Gaps = 14/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ +G +E E L D+ ++ L G Sbjct: 7 ILVVDDEERIRRLLRMYLEKEGYDIEESQDGETALKLAMDKDYDLILLDIML--PGMDGT 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-------- 113 E+ +R P+I ++ + F+ G DD V KP RE++ RV Sbjct: 65 EVCARLRQFKTTPVIMLTAKGEETNRVHGFEVGADDYVVKPFSPREVIYRVKAILRRSSA 124 Query: 114 -AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 A + S+N + + D G+ L +E +L YL + K ++ + Sbjct: 125 TAFLSKDSNSSNNIVFPHLVIEHDAHRVTAGGQEVALTPKEYELLHYLAVSPDKVFSREE 184 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN--KLGFDPVDSKRFLGYSIDW 222 + ++ ++ + V++H+ +LR+KL + + +GY ++ Sbjct: 185 LLKDVW-NYEFFGDLRTVDTHVKRLREKLNKVSPEAAVMITTVWGVGYKLEV 235 >gi|261368149|ref|ZP_05981032.1| DNA-binding response regulator RegX3 [Subdoligranulum variabile DSM 15176] gi|282569913|gb|EFB75448.1| DNA-binding response regulator RegX3 [Subdoligranulum variabile DSM 15176] Length = 228 Score = 164 bits (416), Expect = 6e-39, Method: Composition-based stats. Identities = 36/224 (16%), Positives = 88/224 (39%), Gaps = 6/224 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + +G ++ + D+ ++ Sbjct: 6 ILVVDDDKNICELLRLYLVKEGYNVTMVHDGNAALTEFDKLHPDLVLLDVM--MPVMDGW 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 E+ R IRA P+I ++ + + G DD + KP +E+ AR+ + Sbjct: 64 EVCRKIRAKDNTPIIMLTAKGETYDKVLGLELGADDYIVKPFDAKEVTARIKAVLRRSTK 123 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + + + + + + +V+G+V P +E +L L + + + Q+ ++ Sbjct: 124 EEDNKGVYDFDNLHLDMNRYELKVKGKVVEAPPKELELLACLAGHPNRVYTRDQLLDEVW 183 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 G F+ + ++ H+ +LR+KL + + +GY + Sbjct: 184 G-FEYYGDSRTIDVHVKRLREKLEGASDKWNLKTVWGVGYKFEV 226 >gi|253579598|ref|ZP_04856867.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849099|gb|EES77060.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 233 Score = 164 bits (416), Expect = 6e-39, Method: Composition-based stats. Identities = 48/228 (21%), Positives = 95/228 (41%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + + N E +S R D+ ++ L G Sbjct: 7 ILIVDDDNNIAELIALYLTKECFETKIVNDGEEALREFASFRPDLIILDLML--PGIDGY 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R IR S VP+I +S + + G DD + KP +E++ARV A+ RR +V Sbjct: 65 QVCREIRHTSDVPIIMLSAKGETFDKVLGLELGADDYMIKPFDSKELVARVRAVLRRFQV 124 Query: 122 SNN-------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + V G +P +E +L +L A+ + + Q+ Sbjct: 125 KQPSPSSSEKCVTYPDLTVNLTNYAVTYMGRQVDMPPKELELLYFLAASPNQVFTREQLL 184 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 I+G ++ + V+ HI +LR+K+++ + + + +GY + Sbjct: 185 DHIWG-YEYIGDTRTVDVHIKRLREKIKDNPHWS-IATVWGIGYKFEV 230 >gi|218289584|ref|ZP_03493804.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius LAA1] gi|218240234|gb|EED07417.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius LAA1] Length = 233 Score = 164 bits (416), Expect = 6e-39, Method: Composition-based stats. Identities = 39/229 (17%), Positives = 88/229 (38%), Gaps = 11/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ +G ++ + + + ++ L G Sbjct: 6 ILVVDDEERIRRLVRMYLERNGFEVDEAADGKEALNKALNQAYALIILDLML--PGMDGR 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115 ++ IR HS VP++ ++ + F+ G DD V KP RE+ + + Sbjct: 64 DVCAQIRQHSNVPIMMLTAAGDEANRVHGFELGADDYVVKPFSPRELVLRVKAMLKRTGE 123 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + + + D R EV G+ L +E +L Y+ K ++ ++ Sbjct: 124 MEYARNAIQTLTFPGLEIQIDARRVEVNGQEVSLTPKEFDLLVYMAQRPDKVFSREELLR 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGF--DPVDSKRFLGYSIDW 222 ++ + ++ V++HI +LR+KL + + +GY + Sbjct: 184 DVW-NYQFFGDQRTVDTHIKRLREKLGQASPEVSRYIVTVWGVGYKFEV 231 >gi|222099706|ref|YP_002534274.1| Response regulator DrrA [Thermotoga neapolitana DSM 4359] gi|221572096|gb|ACM22908.1| Response regulator DrrA [Thermotoga neapolitana DSM 4359] Length = 251 Score = 164 bits (416), Expect = 6e-39, Method: Composition-based stats. Identities = 44/230 (19%), Positives = 89/230 (38%), Gaps = 14/230 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + +G + E L + D+ ++ L G Sbjct: 18 ILVVDDDPAILELVGYNLAKEGYDVLKAYDGEEALKLANEEDVDMFIVDIML--PGMDGF 75 Query: 62 ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILAR 111 EL R IR+ P+I +S + + G DD + KP + I R Sbjct: 76 ELVRKIRSMEKYRNTPVIFLSAKGEEFDKVLGLELGADDYITKPFSVRELLARVKAIFRR 135 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 ++A + + + + + + + +V+G+ L E +L +L N GK ++ Sbjct: 136 LSAAVQSKEERPKKITAKDLEIDVEKYEVKVRGKKVNLTPLEFELLRFLAENEGKVFSRD 195 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220 + ++G +D + V+ HI +LR K+ + + + R GY Sbjct: 196 VLLDKLWG-YDYYGDTRTVDVHIRRLRTKIEEDPSNPKYIITVRGKGYKF 244 >gi|325262633|ref|ZP_08129370.1| DNA-binding response regulator VicR [Clostridium sp. D5] gi|324032465|gb|EGB93743.1| DNA-binding response regulator VicR [Clostridium sp. D5] Length = 249 Score = 164 bits (416), Expect = 6e-39, Method: Composition-based stats. Identities = 49/225 (21%), Positives = 93/225 (41%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD L+ G DG+ ++ E + D+ ++ L Sbjct: 26 ILVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEALEYARNCEYDLVLLDVML--PKLDGF 83 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + IR S +P++ ++ + + G DD + KP + E+ AR+ AI RR Sbjct: 84 QVCQQIREFSDMPVVMLTAKSEDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRTAK 143 Query: 122 SNNR-----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 G +R+ + R + L +E +LE L N K ++ + + Sbjct: 144 REEPAGSTVIVKGAMRIDCESRRVFIGEREINLTAKEFDVLELLAMNPNKVYSRENLLNL 203 Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 I+G +D + V+ HI +LR+K+ N V +K +GY Sbjct: 204 IWG-YDYPGDARTVDVHIRRLREKIEKNPSEPKYVHTKWGVGYYF 247 >gi|169832040|ref|YP_001718022.1| two component transcriptional regulator [Candidatus Desulforudis audaxviator MP104C] gi|169638884|gb|ACA60390.1| two component transcriptional regulator, winged helix family [Candidatus Desulforudis audaxviator MP104C] Length = 227 Score = 164 bits (416), Expect = 7e-39, Method: Composition-based stats. Identities = 50/227 (22%), Positives = 101/227 (44%), Gaps = 9/227 (3%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + ++++D A V+D +G + E ++ D+ ++ L + Sbjct: 5 VILMVEDEAAVRDVARLYLEKEGFRVVPALDGEQALEQLTAVNPDLVILDIML--PKKDG 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R IR + VP+I +S + + G DD V KP RE++ARV A+ RR Sbjct: 63 WSVCREIRRQTAVPIIMLSAKGEEYDRVLGLELGADDYVTKPFSPRELVARVKAVLRRSN 122 Query: 121 VSN-----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + ++ R EV+G+ L +E +L +L + + ++ Q+ + Sbjct: 123 APAGTGAGPALRYPGLTIDTEARRVEVEGQPIALTPKEFELLAFLASRPRRVFSREQLLA 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 ++ ++ + V++HI +LR+KLR G + + + LGY + Sbjct: 183 GVWD-YEYPGDTRTVDTHIKRLREKLRG-TGRNYLKTVWGLGYKFEV 227 >gi|297617001|ref|YP_003702160.1| two component transcriptional regulator, winged helix family [Syntrophothermus lipocalidus DSM 12680] gi|297144838|gb|ADI01595.1| two component transcriptional regulator, winged helix family [Syntrophothermus lipocalidus DSM 12680] Length = 237 Score = 164 bits (416), Expect = 7e-39, Method: Composition-based stats. Identities = 41/228 (17%), Positives = 86/228 (37%), Gaps = 10/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 +++DD + + +G + R D+ ++ L G +V Sbjct: 6 ILVVDDEVHIVELVKFNLEKEGFQVRVAYDGITALTQAELVRPDLIILDIMLPQLDGLEV 65 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVA 113 R ++ S P+I ++ T+ + G DD + KP RE++ Sbjct: 66 CRRLRSMQDFSSTPIIMLTAKGEEFDTVLGLEMGADDYIKKPFSPREMVARVKARLRAKR 125 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + V D + V L +E +L+ L +N+GK ++ + Sbjct: 126 ILEAEKATGRKTLVFKDLIVIPDKHEAFVGERRLELTPKEFELLKLLASNQGKVFSREVL 185 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220 ++G ++ + + V+ HI LR+KL + +++ R +GY Sbjct: 186 LEKVWG-YEFSGDTRTVDVHIRHLRQKLGESPSSPQYIETVRGVGYRF 232 >gi|229084208|ref|ZP_04216492.1| Two-component response regulator [Bacillus cereus Rock3-44] gi|228699086|gb|EEL51787.1| Two-component response regulator [Bacillus cereus Rock3-44] Length = 233 Score = 164 bits (415), Expect = 7e-39, Method: Composition-based stats. Identities = 44/227 (19%), Positives = 87/227 (38%), Gaps = 10/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +LIDD + + +G S + S E L D+ ++ L G+ Sbjct: 6 ILLIDDETAILQLLTTILQKEGFSHITTATSAEKALLLVEQKHFDLMILDVML--PGQSG 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH------REILARVAA 114 ++ IIR + P+ ++ S + F G DD + KP + + R Sbjct: 64 FDICPIIRQKTDCPIFFLTAKSSDLDKVSGFLYGADDYITKPFNPLEVVARMKAQLRRHM 123 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + G +++ + +V GE+ + ++L + + +K +I+ Sbjct: 124 KQTPQTIKEYTLSFGRVQIDKHAAELQVDGEIVECSAQLFQLLLFFCEHPNYVFSKEEIY 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++G ++N V HI KLR+K+ + + + R LGY Sbjct: 184 EKVWGAPAYNGDDNTVMVHIRKLREKIELDPSNPKYIKTIRGLGYKF 230 >gi|256004535|ref|ZP_05429514.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 2360] gi|281417959|ref|ZP_06248979.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum JW20] gi|255991540|gb|EEU01643.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 2360] gi|281409361|gb|EFB39619.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum JW20] Length = 230 Score = 164 bits (415), Expect = 7e-39, Method: Composition-based stats. Identities = 44/223 (19%), Positives = 94/223 (42%), Gaps = 6/223 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++IDD + + +G + + + + ++ ++ L G + Sbjct: 10 LVIDDDVNICELIRLYMEKEGFEVVTVYNGSKALEVFRNEAPNIVILDIML--PGADGWQ 67 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR S +P+I +S + + G DD + KP +E++ARV A+ RR + Sbjct: 68 VCREIRKISNIPVIMLSAKGETFDKVLGLELGADDYLVKPFEPKELVARVKAVLRRYEHK 127 Query: 123 NNRAETGPIRVFSDGRDPEV---QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++ + + G+ P +E +L +L +N K + Q+ ++G Sbjct: 128 DSDVQEIVYPNLIINKTNYTLKVNGKEMEFPPKELELLYFLASNPNKVFTREQLIEQVWG 187 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D + V+ HI +LR+KL ++ + + +GY + Sbjct: 188 -YDFYGDSRTVDVHIKRLREKLDSEGQNWQLKTVWGVGYKFEV 229 >gi|321311784|ref|YP_004204071.1| two-component response regulator [Bacillus subtilis BSn5] gi|320018058|gb|ADV93044.1| two-component response regulator [Bacillus subtilis BSn5] Length = 240 Score = 164 bits (415), Expect = 7e-39, Method: Composition-based stats. Identities = 37/232 (15%), Positives = 86/232 (37%), Gaps = 14/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++ + +++ ++ + A D+ ++ G + Sbjct: 9 ILVVDDEARIRRLLRMYLERENYAIDEADNGDEAITKGLEANYDLILLDLM--MPGTDGI 66 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112 E+ R IR P+I ++ + F++G DD + KP RE A Sbjct: 67 EVCRQIREKKATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRASQ 126 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + + N + + D G L +E +L +L K + + Sbjct: 127 TSYFNANTPTKNVLVFSHLSIDHDAHRVTADGTEVSLTPKEYELLYFLAKTPDKVYDREK 186 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN--KLGFDPVDSKRFLGYSIDW 222 + ++ ++ + V++H+ +LR+KL + + +GY + Sbjct: 187 LLKEVW-QYEFFGDLRTVDTHVKRLREKLNKVSPEAAKKIVTVWGVGYKFEV 237 >gi|119961724|ref|YP_947342.1| two-component system response regulator [Arthrobacter aurescens TC1] gi|119948583|gb|ABM07494.1| two-component system response regulator [Arthrobacter aurescens TC1] Length = 274 Score = 164 bits (415), Expect = 8e-39, Method: Composition-based stats. Identities = 45/224 (20%), Positives = 90/224 (40%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + D G ++ L +S + D+ ++ L G + Sbjct: 34 ILLVEDEQTIADVVRDYLLKAGFQVDMAGDGFTALELAASRQPDLVILDRML--PGLDGV 91 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R VP+I ++ + + + G DD V KP RE++ RV ++ RR Sbjct: 92 EVCRRLRQTMSVPVIMVTALGTEDDRILGLEMGADDYVTKPFSPRELVLRVKSVLRRSIK 151 Query: 122 SNNRAETGPI---RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + R G L RE +L ++M + ++ ++ A++ Sbjct: 152 EFAPEPPVEAAGLELDPASRTVTHGGVPLALTVREFDLLAFMMRRPNQVFSREELIKAVW 211 Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 G + + V H+ +LR+K+ N + + + +GY D Sbjct: 212 GWD--FGDLSTVTVHVRRLREKIEANPTKPELLKTVWGVGYRFD 253 >gi|196247939|ref|ZP_03146641.1| two component transcriptional regulator, winged helix family [Geobacillus sp. G11MC16] gi|196212723|gb|EDY07480.1| two component transcriptional regulator, winged helix family [Geobacillus sp. G11MC16] Length = 224 Score = 164 bits (415), Expect = 8e-39, Method: Composition-based stats. Identities = 44/221 (19%), Positives = 98/221 (44%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A +++ +G+++ + + + + + D+ ++ Sbjct: 4 ILVVDDDAHIRELVSHFLSLEGLTIHEAANGKEALDVLETTKVDLVIMDIM--MPEMDGW 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL R +R + VP++ ++ + + F G DD + KP E++ARV A+ +R ++ Sbjct: 62 ELCRELRDYDDVPILMLTAKGETREKVKGFSLGADDYLVKPFDPLELVARVKALLKRYRI 121 Query: 122 SNNRAETGPIRVFSDGRDPEV-QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + ++ + PLP +E +L L + GK + ++ I+G Sbjct: 122 ATSQIVQIGHLSLNRKTYECRLGDVEVPLPPKEFELLFQLASYPGKTFTRDELIEQIWG- 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +D +E V+ HI +LR++ + + R LGY ++ Sbjct: 181 YDYEGDERTVDVHIKRLRERFAQPNAPFFIRTIRGLGYRLE 221 >gi|258511695|ref|YP_003185129.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478421|gb|ACV58740.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 233 Score = 164 bits (415), Expect = 8e-39, Method: Composition-based stats. Identities = 39/229 (17%), Positives = 88/229 (38%), Gaps = 11/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ +G ++ + + + ++ L G Sbjct: 6 ILVVDDEERIRRLVRMYLERNGFEVDEAADGKEALHKALNQAYALIILDLML--PGMDGR 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115 ++ IR HS VP++ ++ + F+ G DD V KP RE+ + + Sbjct: 64 DVCAQIRQHSNVPIMMLTAAGDEANRVHGFELGADDYVVKPFSPRELVLRVKAMLKRTGE 123 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + + + D R EV G+ L +E +L Y+ K ++ ++ Sbjct: 124 MEYARNAIQTLTFPGLEIQIDARRVEVNGQEVNLTPKEFDLLVYMAQRPDKVFSREELLR 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGF--DPVDSKRFLGYSIDW 222 ++ + ++ V++HI +LR+KL + + +GY + Sbjct: 184 DVW-NYQFFGDQRTVDTHIKRLREKLGQASPEVSRYIVTVWGVGYKFEV 231 >gi|209966526|ref|YP_002299441.1| phosphate regulon transcriptional regulatory protein PhoB [Rhodospirillum centenum SW] gi|209959992|gb|ACJ00629.1| phosphate regulon transcriptional regulatory protein PhoB [Rhodospirillum centenum SW] Length = 234 Score = 164 bits (415), Expect = 9e-39, Method: Composition-based stats. Identities = 41/226 (18%), Positives = 80/226 (35%), Gaps = 4/226 (1%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEK 59 + ++++D A + +G + + E L + + ++ L G + Sbjct: 8 LILIVEDEADLVTLLKYNLEKEGFRVISASDGEEALLLANEQAPHLVLLDWMLPLMSGLE 67 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV--NKPIHHREILARVAAIYR 117 V R P+I ++ + +SG DD + R Sbjct: 68 VCRQLRRNPKTRDTPVIMLTARGEEADKVRGLNSGADDYIAKPFSPTELVARMRAVLRRA 127 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 ++ + + G L E R+L + M + G+ ++ Q+ + Sbjct: 128 APGLAEELLRFADVVMDLAAHRVRRNGRDVHLGPTEFRLLRHFMQHPGRVFSREQLLDVV 187 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 +G D VE V+ HI +LRK L D + + R GY++D N Sbjct: 188 WG-HDVYVEPRTVDVHIRRLRKALNETDDQDLIRTVRSAGYALDQN 232 >gi|296332246|ref|ZP_06874708.1| two-component response regulator [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674948|ref|YP_003866620.1| two-component response regulator [Bacillus subtilis subsp. spizizenii str. W23] gi|296150560|gb|EFG91447.1| two-component response regulator [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413192|gb|ADM38311.1| two-component response regulator [Bacillus subtilis subsp. spizizenii str. W23] Length = 240 Score = 164 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 36/232 (15%), Positives = 83/232 (35%), Gaps = 14/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++ + ++ + + A D+ ++ G + Sbjct: 9 ILVVDDEARIRRLLRMYLERENYVIDEAENGDEAIAKGLEANYDLILLDLM--MPGTDGI 66 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112 E+ R +R P+I ++ + F++G DD + KP RE A Sbjct: 67 EVCRQVREKKATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRASQ 126 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + N + + D G L +E +L +L K + + Sbjct: 127 TSYLNANTPTKNVLVFSHLSIDHDAHRVTADGTEVSLTPKEYELLYFLAKTPDKVYDREK 186 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN--KLGFDPVDSKRFLGYSIDW 222 + ++ ++ + V++H+ +LR+KL + + +GY + Sbjct: 187 LLKEVW-QYEFFGDLRTVDTHVKRLREKLNKVSPEAAKKIVTVWGVGYKFEV 237 >gi|153814218|ref|ZP_01966886.1| hypothetical protein RUMTOR_00427 [Ruminococcus torques ATCC 27756] gi|317500010|ref|ZP_07958245.1| DNA-binding response regulator VicR [Lachnospiraceae bacterium 8_1_57FAA] gi|331087760|ref|ZP_08336686.1| hypothetical protein HMPREF1025_00269 [Lachnospiraceae bacterium 3_1_46FAA] gi|145848614|gb|EDK25532.1| hypothetical protein RUMTOR_00427 [Ruminococcus torques ATCC 27756] gi|316898495|gb|EFV20531.1| DNA-binding response regulator VicR [Lachnospiraceae bacterium 8_1_57FAA] gi|330409741|gb|EGG89177.1| hypothetical protein HMPREF1025_00269 [Lachnospiraceae bacterium 3_1_46FAA] Length = 228 Score = 164 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 47/225 (20%), Positives = 94/225 (41%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD L+ G +G+ ++ E + D+ ++ L Sbjct: 5 ILVVDDEKLIVKGIRFSLEQEGMEVDCAYDGEEALEYAKACEYDLVLLDVML--PKLDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + IR S +P++ ++ + + G DD + KP + E+ AR+ AI RR Sbjct: 63 QVCQQIREFSDMPVVMLTAKSEDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRTSK 122 Query: 122 SNNRA-----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 A G +++ + R + L +E +LE L N K ++ + + Sbjct: 123 RKEPAGGPVLIKGSLKIDCESRRVFIGEREINLTAKEFDVLELLAMNPNKVYSRENLLNL 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++G +D + V+ HI +LR+K+ N V +K +GY Sbjct: 183 VWG-YDYPGDARTVDVHIRRLREKIEMNPSEPKYVHTKWGVGYYF 226 >gi|306416863|gb|ADM87277.1| two-component system response regulator [Streptomyces subtropicus] Length = 267 Score = 164 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 48/225 (21%), Positives = 96/225 (42%), Gaps = 10/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD V + + G ++E + ++ R D+ ++ L E Sbjct: 21 LVVDDDPTVAEVVVGYLHRAGYAVEQADDGPAALGRFAAHRPDLVVLDLMLPA--MDGFE 78 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +R H VP+I ++ + + ++G DD V KP RE++ RV ++ RR + + Sbjct: 79 VCRRMREHGPVPVIMLTARGDEEDRILGLETGADDYVTKPFSPRELVLRVDSVLRRARAA 138 Query: 123 NNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 TGP+ R G L RE +L +L+ + G+ + ++ + Sbjct: 139 APADGTGPLSGGGLSLDPASRQASRDGHGLALTLREFDLLAFLLRHPGRAFGREELMREV 198 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221 +G + + V HI +LR K+ + + + +GY +D Sbjct: 199 WGWD--FGDLSTVTVHIRRLRGKVEDDPARPRLIRTVWGVGYRLD 241 >gi|56420814|ref|YP_148132.1| two-component response regulator [Geobacillus kaustophilus HTA426] gi|56380656|dbj|BAD76564.1| two-component response regulator [Geobacillus kaustophilus HTA426] Length = 241 Score = 164 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 42/231 (18%), Positives = 91/231 (39%), Gaps = 14/231 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ + ++ + DV ++ L G+ + Sbjct: 10 ILVVDDEERIRRLLKMYLERENYVIDEAGDGNEALEKALTNDYDVILLDLML--PGKDGI 67 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IRA P++ ++ + F+ G DD + KP RE++ RV A+ RR Sbjct: 68 EVCKEIRAQKTTPIMMLTAKGEESNRVQGFEVGTDDYIVKPFSPREVVLRVKALLRRAAN 127 Query: 122 SNNRA---------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + + +D V G+ L +E +L +L + K + Q Sbjct: 128 AAYAPVETTAKDVLVFPHLTIDNDAHRVTVDGKEVSLTPKEYELLLFLARSPDKVFDREQ 187 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN--KLGFDPVDSKRFLGYSID 221 + ++ ++ + V++HI +LR+KL + + +GY + Sbjct: 188 LLKEVW-HYEFFGDLRTVDTHIKRLREKLNKASPQAGKMIVTVWGVGYKFE 237 >gi|149181689|ref|ZP_01860182.1| ResD [Bacillus sp. SG-1] gi|148850667|gb|EDL64824.1| ResD [Bacillus sp. SG-1] Length = 238 Score = 164 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 36/232 (15%), Positives = 82/232 (35%), Gaps = 14/232 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD ++ + +E E L + D ++ G +E Sbjct: 8 LIVDDEDRIRKLLRMYLERENYVIEEAEDGESALELALNNEYDCILLDLM--MPGMDGIE 65 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARVA 113 + + +R P+I ++ + F+ G DD + KP RE + Sbjct: 66 VCKELRQKKSTPVIMLTAKGEEANRVQGFEVGTDDYIVKPFSPREVVLRVKALLRRSSKT 125 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + + + + +D G+ L +E +L +L K + + Sbjct: 126 SYIHTDTKAKDMIVYPHLTIDNDAHRVTADGKDVNLTPKEYELLYFLSKAPDKVFDREHL 185 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLG--FDPVDSKRFLGYSIDWN 223 ++ +D + V++H+ +LR+KL + + +GY + N Sbjct: 186 LKEVW-HYDFFGDLRTVDTHVKRLREKLNKVSEQAAKMIVTVWGVGYKFEVN 236 >gi|326390847|ref|ZP_08212399.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus JW 200] gi|325993106|gb|EGD51546.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus JW 200] Length = 227 Score = 164 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 42/225 (18%), Positives = 91/225 (40%), Gaps = 7/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++DD + + +G +E + + ++ L G + Sbjct: 7 IYVVDDDKNICEIVSLYLEKEGFDVEQIYDGQSALKKIQEKPPKLVILDIML--PGIDGI 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R +R S+VP+I ++ + + G DD + KP +E++ARV A+ RR + Sbjct: 65 ALCREVRKFSKVPIIMLTAKGDTLDKVLALEIGADDYIVKPFDGKELVARVKAVLRRYEP 124 Query: 122 SNNRAETGPIRVFSDG---RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++ + +G+ L +E +L +L + + + Q+ ++ Sbjct: 125 ESDEKQAVSYPDLYVSLSEYKVVYKGQNVDLTPKELELLYFLCTHPNRVFTRDQLLENVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 G +D + V+ HI +LR+K+ + + + +GY + N Sbjct: 185 G-YDYMGDSRTVDVHIKRLREKMGDGPNWKL-TTVWGVGYKFEVN 227 >gi|261419126|ref|YP_003252808.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC61] gi|319765943|ref|YP_004131444.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC52] gi|261375583|gb|ACX78326.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC61] gi|317110809|gb|ADU93301.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC52] Length = 224 Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 43/221 (19%), Positives = 98/221 (44%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A +++ +G ++ + + + + + D+ ++ Sbjct: 4 ILVVDDDAHIRELVSHFLSLEGFTIHEAANGKEALDVLETVKVDLVIMDIM--MPEMDGW 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL R +R + VP++ ++ + + F+ G DD + KP E++ARV A+ +R ++ Sbjct: 62 ELCRELRDYDDVPILMLTAKGETKQKVKGFELGADDYLVKPFDPLELVARVKALLKRYRI 121 Query: 122 SNNRAETGPIRVFSDGRDPEV-QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + ++ + + LP +E +L L + GK + ++ I+G Sbjct: 122 TTSQIVQIGHLSLNRKTYECRLGDQEITLPPKEFELLFKLASYPGKTFTRDELIEQIWG- 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +D +E V+ HI +LR++ + + R LGY ++ Sbjct: 181 YDYEGDERTVDVHIKRLRERFAQPDSPFSIRTIRGLGYRLE 221 >gi|261406013|ref|YP_003242254.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|329929811|ref|ZP_08283487.1| transcriptional regulatory protein ResD [Paenibacillus sp. HGF5] gi|261282476|gb|ACX64447.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] gi|328935789|gb|EGG32250.1| transcriptional regulatory protein ResD [Paenibacillus sp. HGF5] Length = 238 Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 41/232 (17%), Positives = 89/232 (38%), Gaps = 14/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ +G +E E SS + ++ L G + Sbjct: 8 ILVVDDEERIRRLLKMYLEKEGYEIEEAEDGETALRKASSEDYGLVILDVML--PGMDGV 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-------- 113 E+ +R P++ ++ + F+ G DD V KP RE++ RV Sbjct: 66 EVCTRLRQVKSTPILMLTAKGEEINRVQGFEVGADDYVVKPFSPREVIYRVKAILRRSSA 125 Query: 114 -AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 A + +N + + D G L +E +L YL ++ K ++ + Sbjct: 126 TAYLSKEPNPSNSIVFPHLIIEHDAHRVTAGGHEISLTPKEYELLHYLASSPDKVFSREE 185 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD--PVDSKRFLGYSIDW 222 + ++ ++ + V++H+ +LR+KL + + +GY ++ Sbjct: 186 LLKDVW-NYEFFGDLRTVDTHVKRLREKLNKVSAESAAMITTVWGVGYKLEV 236 >gi|307265089|ref|ZP_07546649.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter wiegelii Rt8.B1] gi|306919887|gb|EFN50101.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter wiegelii Rt8.B1] Length = 227 Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 42/225 (18%), Positives = 91/225 (40%), Gaps = 7/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++DD + + +G +E + + ++ L G + Sbjct: 7 IYVVDDDKNICEIVSLYLEKEGFDVEQIYDGQTALKKIQEKPPKLVILDIML--PGIDGI 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R +R S+VP+I ++ + + G DD + KP +E++ARV A+ RR + Sbjct: 65 ALCREVRKFSKVPIIMLTAKGDTLDKVLALEIGADDYIVKPFDGKELVARVKAVLRRYEP 124 Query: 122 SNNRAETGPIRVFSDG---RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++ + +G+ L +E +L +L + + + Q+ ++ Sbjct: 125 ESDEKQAVSYPDLYVSLSEYKVVYKGQNVDLTPKELELLYFLCTHPNRVFTRDQLLENVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 G +D + V+ HI +LR+K+ + + + +GY + N Sbjct: 185 G-YDYMGDSRTVDVHIKRLREKMGDGPNWKL-TTVWGVGYKFEVN 227 >gi|333026940|ref|ZP_08455004.1| putative two-component system response regulator [Streptomyces sp. Tu6071] gi|332746792|gb|EGJ77233.1| putative two-component system response regulator [Streptomyces sp. Tu6071] Length = 276 Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 45/222 (20%), Positives = 89/222 (40%), Gaps = 7/222 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD V + G +++ + R D+ ++ L G LE Sbjct: 20 LVVDDDPTVAEVVAGYLLRAGCTVDRAGDGPSALARAHTHRPDLVVLDLML--PGMDGLE 77 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +R VP+I ++ + + G DD V KP RE++ RV ++ RR + Sbjct: 78 VCRRMRERHPVPVIMLTARGDEDDRILGLERGADDYVTKPFSPRELVLRVESVLRRTRPD 137 Query: 123 NNRAETGPIR--VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 R + R G L RE +L + + + G+ ++ ++ ++G Sbjct: 138 PAPDPVRLGRLALDPTARLATRDGTPLSLTLREFDLLAFFLRHPGRAYSREELMREVWGW 197 Query: 181 FDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 E + + V HI +LR K+ + + + +GY + Sbjct: 198 --EFGDLSTVTVHIRRLRAKIEDDPAAPRAIRTVWGVGYRFE 237 >gi|253576379|ref|ZP_04853709.1| two component transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251844272|gb|EES72290.1| two component transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 238 Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 42/232 (18%), Positives = 91/232 (39%), Gaps = 14/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ +G ++ E L +S + ++ L G + Sbjct: 8 ILVVDDEERIRRLLKMYLEKEGYEIDEAEDGETALKLATSNDYGLILLDVML--PGIDGV 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ +R P++ ++ + F+ G DD V KP RE++ RV AI RR Sbjct: 66 EVCNRLRQVKATPVLMLTAKGEEINRVQGFEVGADDYVVKPFSPREVIYRVKAIMRRASA 125 Query: 122 SNN---------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + + D G+ L +E +L YL + K ++ + Sbjct: 126 TAYLTKESGTSNNIVFPHLVIEHDAHRVTANGQEVSLTPKEYELLHYLAVSPDKVFSREE 185 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN--KLGFDPVDSKRFLGYSIDW 222 + ++ ++ + V++H+ +LR+KL + + +GY ++ Sbjct: 186 LLKDVW-NYEFFGDLRTVDTHVKRLREKLNKVSPESAAMITTVWGVGYKLEV 236 >gi|297203135|ref|ZP_06920532.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] gi|297148314|gb|EFH28936.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] Length = 240 Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 40/222 (18%), Positives = 80/222 (36%), Gaps = 7/222 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD V + G ++ ++ R D+ ++ L G LE Sbjct: 14 LVVDDDPTVAEVVSGYLDRAGYLVDRAADGPEALARAAAHRPDLVVLDLML--PGMDGLE 71 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--ILARVAAIYRRLK 120 + R +R VP+I ++ + + G DD V KP RE + R Sbjct: 72 VCRRMRGRGPVPVIMLTARGDEDDRILGLEVGADDYVTKPFSPRELVLRVESVLRRSRPA 131 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + + R G L RE +L + + + G+ + + ++G Sbjct: 132 EQSGALRAAGLSLDPQARRAVKNGTELALTIREFDLLAFFLRHPGRVFGREDLMREVWGW 191 Query: 181 FDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221 + + V HI +LR K+ + + + +GY + Sbjct: 192 D--FGDLSTVTVHIRRLRGKVEDDPARPRLIQTVWGVGYRFE 231 >gi|83589979|ref|YP_429988.1| two component transcriptional regulator [Moorella thermoacetica ATCC 39073] gi|83572893|gb|ABC19445.1| two component transcriptional regulator, winged helix family [Moorella thermoacetica ATCC 39073] Length = 226 Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 45/221 (20%), Positives = 91/221 (41%), Gaps = 6/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A + +G +E + L + D+ ++ L G L Sbjct: 5 ILVVDDDAKITSMLKRALTYEGYDVEIAANGHQALALAA-NNPDLIILDIML--PGIDGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI--HHREILARVAAIYRRL 119 + R IR++S +P++ ++ + D+G DD + KP R R Sbjct: 62 AVCRQIRSNSDIPILMLTARDDTADRVLGLDTGADDYLVKPFALEELLARIRALLRRRSR 121 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + + + + R+ F L +E +L Y + N + + + ++ + I+G Sbjct: 122 ETEAEVLQFSDLTLNTSTREGFRGQRSFSLTAKEYELLLYFLQNPHRVLTRDELMTRIWG 181 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D + E NV+E +I LR KL + + R +GY + Sbjct: 182 -YDFSGESNVLEVYIGYLRAKLEAGGEPRLIQTVRGVGYVL 221 >gi|167036595|ref|YP_001664173.1| two component transcriptional regulator [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167039247|ref|YP_001662232.1| two component transcriptional regulator [Thermoanaerobacter sp. X514] gi|256751653|ref|ZP_05492528.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus CCSD1] gi|300913887|ref|ZP_07131204.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter sp. X561] gi|307725428|ref|YP_003905179.1| winged helix family two component transcriptional regulator [Thermoanaerobacter sp. X513] gi|320115022|ref|YP_004185181.1| response regulator receiver [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166853487|gb|ABY91896.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter sp. X514] gi|166855429|gb|ABY93837.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256749462|gb|EEU62491.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus CCSD1] gi|300890572|gb|EFK85717.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter sp. X561] gi|307582489|gb|ADN55888.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter sp. X513] gi|319928113|gb|ADV78798.1| response regulator receiver [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 227 Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 42/225 (18%), Positives = 90/225 (40%), Gaps = 7/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++DD + + +G +E + + ++ L G + Sbjct: 7 IYVVDDDKNICEIVSLYLEKEGFDVEQIYDGQTALKKIQEKPPKLVILDIML--PGIDGI 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R +R S+VP+I ++ + + G DD + KP +E++ARV A+ RR + Sbjct: 65 ALCREVRKFSKVPIIMLTAKGDTLDKVLALEIGADDYIVKPFDGKELVARVKAVLRRYEP 124 Query: 122 SNNRAETGPIRVFSDG---RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + +G+ L +E +L +L + + + Q+ ++ Sbjct: 125 ESEEKQAVSYPELYVSLSEYKVVYKGQNVDLTPKELELLYFLCTHPNRVFTRDQLLENVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 G +D + V+ HI +LR+K+ + + + +GY + N Sbjct: 185 G-YDYMGDSRTVDVHIKRLREKMGDGPNWKL-TTVWGVGYKFEVN 227 >gi|197301860|ref|ZP_03166929.1| hypothetical protein RUMLAC_00586 [Ruminococcus lactaris ATCC 29176] gi|197299090|gb|EDY33621.1| hypothetical protein RUMLAC_00586 [Ruminococcus lactaris ATCC 29176] Length = 229 Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 43/226 (19%), Positives = 91/226 (40%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD L+ G +G+ ++ E D+ ++ L Sbjct: 5 ILVVDDEKLIVKGICFSLEQEGMEVDCAYDGEEALEYAKKCEYDLVLLDVML--PKLDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH------HREILARVAAI 115 ++ + IR S +P++ ++ + + G DD + KP + + + R A Sbjct: 63 QVCQQIREFSDMPVVMLTAKSEDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRTAK 122 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + G +++ +GR + + L +E +LE L N K ++ + + Sbjct: 123 RKEEPAQSPMLVKGNMKIDCEGRRVFIGEKEINLTAKEFDVLELLAMNPNKVYSRENLLN 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 I+G +D + V+ HI +LR+K+ N V +K +GY Sbjct: 183 LIWG-YDYPGDARTVDVHIRRLREKIEMNPSEPKYVHTKWGVGYYF 227 >gi|332977343|gb|EGK14128.1| DNA-binding response regulator [Desmospora sp. 8437] Length = 241 Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 41/232 (17%), Positives = 92/232 (39%), Gaps = 14/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ +G ++ E D+ ++ L G + Sbjct: 10 ILVVDDEDRIRRLLRMYLEREGYLIDEAEDGETALKKGLEIDYDLILLDLML--PGMDGV 67 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-------- 113 ++ R +R P+I ++ ++ F++G DD V KP RE++ RV Sbjct: 68 DVCRELRNKKATPVIMLTARGEETNRVEGFEAGTDDYVVKPFSPRELVHRVKAVLRRSSA 127 Query: 114 -AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 A ++N + + D + G L +E +L YL ++ K + + Sbjct: 128 TAFLSTETETHNVIVFPELTIDHDAHEVRAGGTEVSLTPKEYELLHYLASSPDKVFTREE 187 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL--RNKLGFDPVDSKRFLGYSIDW 222 + ++ ++ + V++HI +LR+KL + + + +GY ++ Sbjct: 188 LLRDVW-NYEFFGDLRTVDTHIKRLREKLNRASPKAAAMIHTVWGVGYKLEV 238 >gi|291550846|emb|CBL27108.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus torques L2-14] Length = 229 Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 48/226 (21%), Positives = 93/226 (41%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD L+ G +G+ ++ E D+ ++ L Sbjct: 5 ILVVDDEKLIVKGIRFSLEQEGMEVDCAYDGEEALEYARRCEYDLVLLDVML--PKLDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + IR S +P++ ++ + + G DD + KP + E+ AR+ AI RR Sbjct: 63 QVCQQIREFSDMPIVMLTAKSEDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRTAK 122 Query: 122 SNNRA------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 G +++ +GR + L +E +LE L N K ++ + + Sbjct: 123 RKEEPAGSPVLVKGNMKIDCEGRRVFIGEREINLTAKEFDVLELLAMNPNKVYSRENLLN 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 I+G +D + V+ HI +LR+K+ N V +K +GY Sbjct: 183 LIWG-YDYPGDARTVDVHIRRLREKIEQNPSEPKYVHTKWGVGYYF 227 >gi|15614143|ref|NP_242446.1| two-component response regulator [Bacillus halodurans C-125] gi|10174197|dbj|BAB05299.1| two-component response regulator [Bacillus halodurans C-125] Length = 238 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 36/232 (15%), Positives = 86/232 (37%), Gaps = 14/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ + +E + + + DV ++ + Sbjct: 7 ILVVDDEDRIRNLLKMYLEREAYDVEEASDGKEALEKALAFDYDVILLDLM--MPEMDGI 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112 E+ + +R P+I ++ + F+ G DD + KP RE + Sbjct: 65 EVCQKLRKQKATPIIMLTAKGEEANRVQGFEVGTDDYIVKPFSPREVVLRVKALLRRSSS 124 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + + + + +D V + L +E +L YL + K ++ Q Sbjct: 125 TKFLQTDTQAKDVLVFPHLSIDNDAHRVTVADQEINLTPKEYELLYYLAQSPDKVFSREQ 184 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSIDW 222 + ++ +D + V++HI +LR+KL + + + +GY + Sbjct: 185 LLKDVW-NYDFFGDLRTVDTHIKRLREKLNRVSPQAASMISTVWGVGYKFEV 235 >gi|261417884|ref|YP_003251566.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC61] gi|319767304|ref|YP_004132805.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC52] gi|261374341|gb|ACX77084.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC61] gi|317112170|gb|ADU94662.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC52] Length = 241 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 42/231 (18%), Positives = 91/231 (39%), Gaps = 14/231 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ + ++ + DV ++ L G+ + Sbjct: 10 ILVVDDEERIRRLLKMYLERENYVIDEAGDGNEALEKALTNDYDVILLDLML--PGKDGI 67 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IRA P++ ++ + F+ G DD + KP RE++ RV A+ RR Sbjct: 68 EVCKEIRAQKTTPIMMLTAKGEESNRVQGFEVGTDDYIVKPFSPREVVLRVKALLRRAAN 127 Query: 122 SNNRA---------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + + +D V G+ L +E +L +L + K + Q Sbjct: 128 AAYAPVETTAKDVLVFPHLTIDNDAHRVTVDGKEVSLTPKEYELLLFLARSPDKVFDREQ 187 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN--KLGFDPVDSKRFLGYSID 221 + ++ ++ + V++HI +LR+KL + + +GY + Sbjct: 188 LLKEVW-HYEFFGDLRTVDTHIKRLREKLNKASPQAGKMIVTVWGVGYKFE 237 >gi|78044728|ref|YP_360866.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans Z-2901] gi|77996843|gb|ABB15742.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans Z-2901] Length = 231 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 42/227 (18%), Positives = 90/227 (39%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A + + +G + + D+ ++ L G L Sbjct: 3 ILVVDDEAPIVELIKFNLEREGYKVLEAYDGIRALEIVKKELPDLVILDIML--PGMSGL 60 Query: 62 ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAA 114 E+ + IR +++P+I +S + + G DD + KP R + AR+ Sbjct: 61 EVCKNIRNNEKTAEIPIIMLSARGEEVDKILGLELGADDYMVKPFSPRELVARVKARLRR 120 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + R + I + + V+G+ +E +L+ L +N GK + + Sbjct: 121 LEGREGKKEGIIKIKDIVIDQEKFAVYVKGKKMDFTPKEFELLKLLASNPGKVFTREYLL 180 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 I+G ++ + V+ HI +R+K+ + +++ R +GY Sbjct: 181 EKIWG-YEFLGDTRTVDVHIRHIRQKIEDNPADPVYIETVRGVGYRF 226 >gi|315646392|ref|ZP_07899510.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] gi|315278035|gb|EFU41355.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] Length = 238 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 41/232 (17%), Positives = 89/232 (38%), Gaps = 14/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ +G +E E SS + ++ L G + Sbjct: 8 ILVVDDEERIRRLLKMYLEKEGYEIEEAEDGETALRKASSEDYGLVILDVML--PGMDGV 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-------- 113 E+ +R P++ ++ + F+ G DD V KP RE++ RV Sbjct: 66 EVCTRLRQVKSTPILMLTAKGEEINRVQGFEVGADDYVVKPFSPREVIYRVKAILRRSSA 125 Query: 114 -AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 A + +N + + D G L +E +L YL ++ K ++ + Sbjct: 126 TAYLSKETNPSNSIVFPHLVIEHDAHRVTAGGHEISLTPKEYELLHYLASSPDKVFSREE 185 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD--PVDSKRFLGYSIDW 222 + ++ ++ + V++H+ +LR+KL + + +GY ++ Sbjct: 186 LLKDVW-NYEFFGDLRTVDTHVKRLREKLNKVSSDSAAMITTVWGVGYKLEV 236 >gi|304406985|ref|ZP_07388639.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] gi|304343972|gb|EFM09812.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] Length = 238 Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 40/232 (17%), Positives = 91/232 (39%), Gaps = 14/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ +G +E E + + D+ ++ L G + Sbjct: 8 ILVVDDEERIRRLLKMYLEKEGYEIEEAEDGETALRMAAGKDYDLIMLDVML--PGIDGV 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ +R P+I ++ + F++G DD V KP RE++ RV AI RR Sbjct: 66 EVCSRLRQVKATPVIMLTAKGEEMNRVQGFEAGADDYVVKPFSPREVIYRVKAILRRSSA 125 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPL---------PRRERRILEYLMANRGKRVAKTQ 172 + + ++ + + +E +L YL + K ++ + Sbjct: 126 TAFLTKEANSSNNIVLPHLVIEHDAHRVSAGGQEVSLTPKEYELLHYLAVSPDKVFSREE 185 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN--KLGFDPVDSKRFLGYSIDW 222 + ++ ++ + V++H+ +LR+KL + + +GY ++ Sbjct: 186 LLKDVW-NYEFFGDLRTVDTHVKRLREKLNKVSPEAASMITTVWGVGYKLEV 236 >gi|297529552|ref|YP_003670827.1| two component transcriptional regulator, winged helix family [Geobacillus sp. C56-T3] gi|297252804|gb|ADI26250.1| two component transcriptional regulator, winged helix family [Geobacillus sp. C56-T3] Length = 241 Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 41/231 (17%), Positives = 90/231 (38%), Gaps = 14/231 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ + ++ + DV ++ L G+ + Sbjct: 10 ILVVDDEERIRRLLKMYLERENYVIDEAGDGNEALEKALTNDYDVILLDLML--PGKDGI 67 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IR P++ ++ + F+ G DD + KP RE++ RV A+ RR Sbjct: 68 EVCKEIREQKTTPIMMLTAKGEESNRVQGFEVGTDDYIVKPFSPREVVLRVKALLRRAAN 127 Query: 122 SNNRA---------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + + +D V G+ L +E +L +L + K + Q Sbjct: 128 AAYAPVETTAKDVLVFPHLTIDNDAHRVTVDGKEVSLTPKEYELLLFLARSPDKVFDREQ 187 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN--KLGFDPVDSKRFLGYSID 221 + ++ ++ + V++HI +LR+KL + + +GY + Sbjct: 188 LLKEVW-HYEFFGDLRTVDTHIKRLREKLNKASPQAGKMIVTVWGVGYKFE 237 >gi|332654461|ref|ZP_08420204.1| DNA-binding response regulator SrrA [Ruminococcaceae bacterium D16] gi|332516425|gb|EGJ46031.1| DNA-binding response regulator SrrA [Ruminococcaceae bacterium D16] Length = 233 Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 42/224 (18%), Positives = 88/224 (39%), Gaps = 7/224 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + + + +G + S + + ++ L Sbjct: 6 LIVEDDSNIAELLHLYLEKEGFETKVAKDGGKGVEYFRSFQPALVLLDIML--PVMDGWT 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + IR S P+I ++ + + +SG DD + KP +E+LAR+ A+ RR Sbjct: 64 VLKKIREESATPVIMLTAKGETEDKVTGLESGADDYIVKPFEMKEVLARIHAVMRRTGQE 123 Query: 123 NNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + D + V G+ P +E +L +L + + + Q+ ++ Sbjct: 124 EEQENKKLSFDKLVINLDSYELLVDGKRVDTPPKELELLYHLASAPNRVFTRNQLLDEVW 183 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 G FD + V+ HI +LR+KL + + +GY + Sbjct: 184 G-FDYFGDSRTVDVHIKRLREKLEGVSDQWRLKTVWGVGYKFEV 226 >gi|254488622|ref|ZP_05101827.1| phosphate regulon transcriptional regulatory protein PhoB [Roseobacter sp. GAI101] gi|214045491|gb|EEB86129.1| phosphate regulon transcriptional regulatory protein PhoB [Roseobacter sp. GAI101] Length = 229 Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 49/222 (22%), Positives = 95/222 (42%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 +L++D ++ +G + + E L + A D+ ++ + G +V Sbjct: 8 ILLVEDEPAQREVLAYNLESEGYDVRRAENGEEAMLLVAEALPDLVILDWMMPLLSGIEV 67 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + +P+I +S + ++G DD V KP RE++ARV RR++ Sbjct: 68 CRQLKTREDTRNIPVIMLSARSEEVDAVRGLETGADDYVVKPYSMRELMARVRTQLRRIR 127 Query: 121 VSNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + I + + + L E R+L L+ G+ ++ Q+ ++ Sbjct: 128 PAATGGQLCYQDITLDPERHRVNRATQELKLGPTEYRLLVTLLERPGRVFSRDQLLDHVW 187 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G D V+ V+ HI++LRK L G DP+ + R GY++ Sbjct: 188 GR-DIFVDTRTVDVHIARLRKALTQHGGDDPIRTVRGAGYAL 228 >gi|318081143|ref|ZP_07988475.1| two-component system response regulator [Streptomyces sp. SA3_actF] Length = 327 Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 45/222 (20%), Positives = 89/222 (40%), Gaps = 7/222 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD V + G +++ + R D+ ++ L G LE Sbjct: 20 LVVDDDPTVAEVVAGYLLRAGCTVDRAGDGPSALARAHTHRPDLVVLDLML--PGMDGLE 77 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +R VP+I ++ + + G DD V KP RE++ RV ++ RR + Sbjct: 78 VCRRMRERHPVPVIMLTARGDEDDRILGLERGADDYVTKPFSPRELVLRVESVLRRTRPD 137 Query: 123 NNRAETGPIR--VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 R + R G L RE +L + + + G+ ++ ++ ++G Sbjct: 138 PAPDPVRLGRLALDPAARLATRDGTPLSLTLREFDLLAFFLRHPGRAYSREELMREVWGW 197 Query: 181 FDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 E + + V HI +LR K+ + + + +GY + Sbjct: 198 --EFGDLSTVTVHIRRLRAKIEDDPAAPRAIRTVWGVGYRFE 237 >gi|289579384|ref|YP_003478011.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter italicus Ab9] gi|289529097|gb|ADD03449.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter italicus Ab9] Length = 227 Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 42/225 (18%), Positives = 90/225 (40%), Gaps = 7/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++DD + + +G +E + + ++ L G + Sbjct: 7 IYVVDDDKNICEIVSLYLEKEGFEVEQIYDGQTALKKIQDNPPRLVILDIML--PGIDGI 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R +R S+VP+I ++ + + G DD + KP +E++ARV A+ RR + Sbjct: 65 ALCREVRKFSKVPIIMLTAKGDTLDKVLALEIGADDYIVKPFDGKELIARVKAVLRRYEP 124 Query: 122 SNNRAETGPIRVFSDG---RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++ +G+ L +E +L +L + + + Q+ ++ Sbjct: 125 ESDERRAVSYPDLYVSLSEYKVVYKGQNVDLTPKELELLYFLCTHPNRVFTRDQLLENVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 G +D + V+ HI +LR+K+ + + + +GY + N Sbjct: 185 G-YDYMGDSRTVDVHIKRLREKIGDGTNWKL-TTVWGVGYKFEVN 227 >gi|256371018|ref|YP_003108842.1| two component transcriptional regulator, winged helix family [Acidimicrobium ferrooxidans DSM 10331] gi|256007602|gb|ACU53169.1| two component transcriptional regulator, winged helix family [Acidimicrobium ferrooxidans DSM 10331] Length = 242 Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 53/226 (23%), Positives = 95/226 (42%), Gaps = 10/226 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++ DD + + +G N E L S D+ ++ L L+ Sbjct: 14 LIADDEPSFVEALVLGLTREGFETIVANDGEEALALSRSHHPDLILLDVML--PRLSGLD 71 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR S VP+I ++ T+ + G DD V KP E++AR+ A RR K Sbjct: 72 VCRTIRQESSVPIIMVTARSGELDTVLGLELGADDYVTKPFRMSELVARIRAQMRRTKHQ 131 Query: 123 NNRA------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 E+ I V+ D +V+G LP +E +L + N G+ + + I Sbjct: 132 GQAQAAEEILESHGITVYVDRHQVDVRGTEVRLPPKEFDLLLLFLRNPGRVLTRDLILDR 191 Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 ++G D + ++ H+ +LR K+ + + + R +GY ++ Sbjct: 192 VWG-SDYYGDTKTLDVHVKRLRSKIEPDPNNPSIIATVRGVGYRLE 236 >gi|302390009|ref|YP_003825830.1| two component transcriptional regulator, winged helix family [Thermosediminibacter oceani DSM 16646] gi|302200637|gb|ADL08207.1| two component transcriptional regulator, winged helix family [Thermosediminibacter oceani DSM 16646] Length = 227 Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 43/223 (19%), Positives = 91/223 (40%), Gaps = 5/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G ++ + + + + ++ ++ L Sbjct: 6 ILVVDDEEKIVDLVKLYLEKEGFKVDEAHDGQQALDMIAKGEYNLIILDLML--PVIDGW 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119 + + +R S +P+I ++ + F+ G DD V KP RE++ARV A Sbjct: 64 TVCKEVRKKSDIPIIMLTARGEEFDKVLGFELGADDYVVKPFSPRELVARVKALLRRLGP 123 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 K E + + + R G+ L +E +L +L N+ K + ++ ++G Sbjct: 124 KGPEQTLEFPGLVIEPESRTVRADGKEVALTPKEFDLLYFLAKNKEKVFTREKLLEEVWG 183 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D V++HI +LR+KL + + +GY + Sbjct: 184 -YDFFGSLRTVDTHIKQLREKLGRSKAASYITTVWGVGYKFEV 225 >gi|56963600|ref|YP_175331.1| two-component response regulator [Bacillus clausii KSM-K16] gi|56909843|dbj|BAD64370.1| two-component response regulator [Bacillus clausii KSM-K16] Length = 238 Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 38/231 (16%), Positives = 89/231 (38%), Gaps = 14/231 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ + +E ++ E L + D+ ++ G + Sbjct: 7 LLVVDDEERIRRLLRMYLEREEYQIEEASNGEEALELALAKEYDLILLDVM--MPGMDGV 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112 E+ + +R P++ ++ + F+ G DD + KP RE A Sbjct: 65 EMCQELRKKKATPVMMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKALLRRASA 124 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + + GP+ + +D V L +E +L YL + K ++ Q Sbjct: 125 TKFLQTDTQTKDVLVFGPLTIDNDAHRVTVDKTEISLTPKEYELLFYLAQSPDKVFSREQ 184 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSID 221 + ++ ++ + V++H+ +LR+KL + + + +GY + Sbjct: 185 LLKDVW-NYEFFGDLRTVDTHVKRLREKLNRVSPEVAAIISTVWGVGYKFE 234 >gi|332982066|ref|YP_004463507.1| winged helix family two component transcriptional regulator [Mahella australiensis 50-1 BON] gi|332699744|gb|AEE96685.1| two component transcriptional regulator, winged helix family [Mahella australiensis 50-1 BON] Length = 228 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 46/224 (20%), Positives = 100/224 (44%), Gaps = 6/224 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD + F +G ++ N+ + S+ ++ ++ L G+ Sbjct: 7 ILIIDDDKNICQLLNLYFTKEGFEVDIANNGKEGMSHFSNNPPNIVILDIML--PGKDGW 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 ++ R IR S +P+I ++ + + G DD V KP +E++ARV Y + Sbjct: 65 DICREIRRMSDIPIIMLTAKSETFDKVLGLELGADDYVVKPFDPKELIARVKAVLRRYNQ 124 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 +NN + + + + Q + LP +E +L +L ++ K + Q+ ++ Sbjct: 125 DNDANNVIVYPNLVIDKNTMLVKYQKKELELPPKEFELLYFLASHPNKVYTREQLLEQVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 G FD + V+ H+++LR+K+ ++ + + +GY + Sbjct: 185 G-FDYYGDSRTVDVHVNRLREKIGSENDPWKISTVWGVGYKFEV 227 >gi|291543615|emb|CBL16724.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus sp. 18P13] Length = 232 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 49/224 (21%), Positives = 98/224 (43%), Gaps = 8/224 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + D +G S+ + E ++ + D+ ++ L G + Sbjct: 7 LIVDDDKNICDLLRLYLEKEGYSVILSHDGEEAVVKFNALKPDIVLLDVML--PGLDGWQ 64 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR S +P++ I+ + + G DD + KP +E++AR+ A+ RR S Sbjct: 65 VCREIRKKSNIPILMITAKSDTFDKVLGLELGADDYIVKPFDSKEVIARIKAVVRRTGQS 124 Query: 123 NNRAETGPIRVF-----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 E +R + +V G+V P +E +L YL +N + + Q+ + Sbjct: 125 PAEMEVREVRYDKLSVNMTRYELKVDGKVVDAPPKELELLFYLASNPNRVYTRDQLLDEV 184 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +G F+ + ++ HI +LR+KL + + +GY + Sbjct: 185 WG-FEYYGDSRTIDVHIKRLREKLEGVSDKWELKTVWGVGYKFE 227 >gi|332968094|gb|EGK07181.1| DNA-binding response regulator [Desmospora sp. 8437] Length = 237 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 49/229 (21%), Positives = 106/229 (46%), Gaps = 13/229 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + +G S+E + + + D+ ++ L LE Sbjct: 7 LVVDDEPSIVKLVQFNLEKEGFSVEVASDGQTALEKVNEHPPDLIVLDLML--PKMDGLE 64 Query: 63 LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + IR +S +P++ ++ + + G DD + KP RE++ARV AI RR++ Sbjct: 65 VCKQIRKENSHLPILMLTAKNEEFDKVLGLELGADDYMTKPFSPRELVARVKAILRRMEA 124 Query: 122 SNNRAETGPIRV--------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 ++ G ++G + +G+ L +E +L +L ++RGK +++ Q+ Sbjct: 125 LRDQGIPGDRNCLRVGELEIDTEGYEVRKKGDPVDLTPKEFELLIHLASHRGKVLSRDQL 184 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 +A++ +D + +V+ H+S LR+K+ + + R +GY + Sbjct: 185 LNAVWD-YDYIGDTRIVDVHVSHLREKVEEDSRNPIYIKTVRGIGYKFE 232 >gi|218134831|ref|ZP_03463635.1| hypothetical protein BACPEC_02734 [Bacteroides pectinophilus ATCC 43243] gi|217990216|gb|EEC56227.1| hypothetical protein BACPEC_02734 [Bacteroides pectinophilus ATCC 43243] Length = 231 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 41/228 (17%), Positives = 93/228 (40%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + + E + R D+ ++ L G Sbjct: 7 ILIVDDDENIAELIALYLTKECFETMTVHDGEAALAAVTEFRPDLMILDLML--PGMDGY 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R +R ++ +P+I +S + + G DD + KP +E++ARV A+ RR + Sbjct: 65 QVCREVRRNNNLPIIMLSAKGETFDKVLGLELGADDYMIKPFDSKELVARVKAVLRRYQQ 124 Query: 122 SN-------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 E + + G +P +E +L +L ++ + + Q+ Sbjct: 125 PKADTAADAKTVEYPGLSINLANYSVIYDGTPVEMPPKELELLYFLASSPNQVFTREQLL 184 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 I+G ++ + V+ HI +LR+K+++ + + +GY + Sbjct: 185 DHIWG-YEYLGDTRTVDVHIKRLREKIKDH-EQWSIATVWGIGYKFEV 230 >gi|156740962|ref|YP_001431091.1| two component transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156232290|gb|ABU57073.1| two component transcriptional regulator, winged helix family [Roseiflexus castenholzii DSM 13941] Length = 236 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 42/223 (18%), Positives = 83/223 (37%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++D +G + ++ + D+ ++ Sbjct: 4 ILVVDDEPALRDMLRLYLEQEGFHVVEAGDGRRALYVARVEKPDLVILDLM--MPEMGGY 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 E R S+ P+I ++ + + G DD V KP + RE++AR+ ++ Sbjct: 62 EFLRAFAKESRTPVIVLTAKIEDTDKILGLELGADDYVTKPFNVRELIARIRAVLRRTQQ 121 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + I + GR V G L E IL LMA G+ ++ + + Sbjct: 122 APLEPDVLRAADIVLDRTGRTVRVGGRYIDLTPSEFAILATLMAAPGQVFSRLDLLDRVS 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 G E ++ HI LR K+ + +++ +GY Sbjct: 182 G-DAFEGSERTIDVHIRNLRAKIEDDPRNPRYIETVYGMGYRF 223 >gi|83953654|ref|ZP_00962375.1| phosphate regulon transcriptional regulatory protein PhoB [Sulfitobacter sp. NAS-14.1] gi|83841599|gb|EAP80768.1| phosphate regulon transcriptional regulatory protein PhoB [Sulfitobacter sp. NAS-14.1] Length = 229 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 51/222 (22%), Positives = 99/222 (44%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 +L++D ++ +G + + E L + A D+ ++ + G +V Sbjct: 8 ILLVEDEPAQREILAYNLESEGFDVRRAENGEEAILLVAEALPDLIILDWMMPLLSGIEV 67 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + +P+I +S T+ ++G DD V KP RE++ARV RR++ Sbjct: 68 CRQLKTREDTRNIPVIMLSARSEEVDTVRGLETGADDYVVKPYSMRELMARVRTQLRRVR 127 Query: 121 VSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 +++ A I + ++ L E R+L L+ G+ ++ Q+ ++ Sbjct: 128 PASSGASLSYADITLDTERHRVNRAANELKLGPTEYRLLVTLLERPGRVFSRDQLLDHVW 187 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G D V+ V+ HI++LRK L + G DP+ + R GY++ Sbjct: 188 GR-DIYVDTRTVDVHIARLRKALTSHGGDDPIRTVRGAGYAL 228 >gi|284053232|ref|ZP_06383442.1| two component transcriptional regulator [Arthrospira platensis str. Paraca] gi|291565873|dbj|BAI88145.1| two-component response regulator [Arthrospira platensis NIES-39] Length = 233 Score = 162 bits (411), Expect = 3e-38, Method: Composition-based stats. Identities = 44/233 (18%), Positives = 87/233 (37%), Gaps = 14/233 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G S + + + R DV ++ L G L Sbjct: 3 ILIVEDEPEIALLIRRTLEGEGFSCQISQNGLSALEIFQQQRPDVIILDLML--PGLDGL 60 Query: 62 ELPRIIRAHSQVPL---IGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA----- 113 E+ IR + ++ + +G DD + KP RE++ARV Sbjct: 61 EVCARIRQQPGQKDPYILMLTAKGEEIDRIVGLSTGADDYMVKPFSPRELVARVRALLRR 120 Query: 114 --AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + + T I E L E +L ++ G+ ++T Sbjct: 121 SLRQGGQTQTHQTPHFTVDIDQRKANFQNHGNTEPLDLTTLEFNLLATFLSYPGRVWSRT 180 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223 Q+ ++G D +E VV++H+++LRKK+ + + + +GY + N Sbjct: 181 QLIDKLWG-DDFFGDERVVDTHVARLRKKIEPDPSHPTFIKTVTGVGYKFEDN 232 >gi|51893644|ref|YP_076335.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] gi|51857333|dbj|BAD41491.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] Length = 233 Score = 162 bits (411), Expect = 3e-38, Method: Composition-based stats. Identities = 48/232 (20%), Positives = 89/232 (38%), Gaps = 13/232 (5%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + +++DD + D +G + ++ + + D+ ++ G Sbjct: 5 LILVVDDEQAIADLIEIHLLAEGYRVRKADNGADALRIVAEEDPDLVVLDIM--MPGMDG 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R IR VP++ +S + +G DD + KP + E++ARV A RR Sbjct: 63 LEVCRAIRRERNVPILMLSAKSEDVDKILGLKTGADDYLTKPFNPLELVARVKAQLRRYL 122 Query: 121 VSNNRAETGPIR---------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 N + + GR G L E IL L ++ G+ + Sbjct: 123 SLNPASAAAREPGVLAVGGLRIDPLGRSVFKDGREIALTPTEFDILLLLASHPGRVFSSE 182 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDW 222 +IF ++ N V HI +LR+K+ + + + +GY I+ Sbjct: 183 EIFERVW-KEHYFQSNNTVMVHIRRLREKVEDDPSHPTLIRTVWGVGYKIEK 233 >gi|83942434|ref|ZP_00954895.1| phosphate regulon transcriptional regulatory protein PhoB [Sulfitobacter sp. EE-36] gi|83846527|gb|EAP84403.1| phosphate regulon transcriptional regulatory protein PhoB [Sulfitobacter sp. EE-36] Length = 229 Score = 162 bits (411), Expect = 3e-38, Method: Composition-based stats. Identities = 51/222 (22%), Positives = 99/222 (44%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 +L++D ++ +G + + E L + A D+ ++ + G +V Sbjct: 8 ILLVEDEPAQREILAYNLESEGFDVRRAENGEEAILLVAEALPDLIILDWMMPLLSGIEV 67 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + +P+I +S T+ ++G DD V KP RE++ARV RR++ Sbjct: 68 CRQLKTREDTRNIPVIMLSARSEEVDTVRGLETGADDYVVKPYSMRELMARVRTQLRRVR 127 Query: 121 VSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 +++ A I + ++ L E R+L L+ G+ ++ Q+ ++ Sbjct: 128 PASSGAALSYADITLDTERHRVNRAANELKLGPTEYRLLVTLLERPGRVFSRDQLLDHVW 187 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G D V+ V+ HI++LRK L + G DP+ + R GY++ Sbjct: 188 GR-DIYVDTRTVDVHIARLRKALTSHGGDDPIRTVRGAGYAL 228 >gi|311069407|ref|YP_003974330.1| two-component response regulator [Bacillus atrophaeus 1942] gi|310869924|gb|ADP33399.1| two-component response regulator [Bacillus atrophaeus 1942] Length = 240 Score = 162 bits (411), Expect = 3e-38, Method: Composition-based stats. Identities = 45/234 (19%), Positives = 94/234 (40%), Gaps = 16/234 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + G + + E + + D+ ++ L + Sbjct: 5 ILVVDDEESIVTLLQYNLERSGYEVVTASDGEEALKQAETEKPDLIVLDLML--PKLDGI 62 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ + +R P++ ++ + + G DD + KP RE+ ARV AI RR + Sbjct: 63 EVCKQLRQQKLMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRRSE 122 Query: 121 VSNNRAETGPIRVF-----------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 +++ + D + + L +E +L YL ++G+ + Sbjct: 123 IASPSFDGQNDVKDGQLIIGDLKILPDHYEAYFKSNQLELTPKEFELLLYLGKHKGRVLT 182 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDW 222 + + SA++ +D A + +V+ HIS LR K+ + + R LGY ++ Sbjct: 183 RDLLLSAVW-NYDFAGDTRIVDVHISHLRDKIETNTKKPIYIKTIRGLGYKLEE 235 >gi|157693311|ref|YP_001487773.1| response regulator PhoP [Bacillus pumilus SAFR-032] gi|157682069|gb|ABV63213.1| response regulator PhoP [Bacillus pumilus SAFR-032] Length = 242 Score = 162 bits (411), Expect = 3e-38, Method: Composition-based stats. Identities = 41/236 (17%), Positives = 92/236 (38%), Gaps = 18/236 (7%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + G + E +S + D+ ++ L + Sbjct: 5 ILVVDDEESIVTLLSYNLERAGYDVVTARDGEEALEKAASEQPDLIVLDLML--PKMDGI 62 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR-------------E 107 E+ + +R P++ ++ + + G DD + KP R + Sbjct: 63 EVCKQLRIQKMMFPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVGARVKAILRRAQ 122 Query: 108 ILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167 + ++ ++ + G +R+ + + Q E L +E +L YL ++G+ Sbjct: 123 QSQPAPTQEEKEEIIADQIKIGELRILPEHYEVYFQEERLELTPKEFELLLYLAKHKGRV 182 Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 + + + SA++ +D A + +V+ HIS LR K+ + + R LGY ++ Sbjct: 183 LTRDLLLSAVW-NYDFAGDTRIVDVHISHLRDKIEKNTKKPTYIKTIRGLGYKLEE 237 >gi|52080826|ref|YP_079617.1| two-component response regulator ResD [Bacillus licheniformis ATCC 14580] gi|52786197|ref|YP_092026.1| hypothetical protein BLi02458 [Bacillus licheniformis ATCC 14580] gi|319645215|ref|ZP_07999448.1| transcriptional regulatory protein resD [Bacillus sp. BT1B_CT2] gi|52004037|gb|AAU23979.1| two-component response regulator ResD [Bacillus licheniformis ATCC 14580] gi|52348699|gb|AAU41333.1| ResD [Bacillus licheniformis ATCC 14580] gi|317393024|gb|EFV73818.1| transcriptional regulatory protein resD [Bacillus sp. BT1B_CT2] Length = 240 Score = 162 bits (411), Expect = 3e-38, Method: Composition-based stats. Identities = 35/232 (15%), Positives = 81/232 (34%), Gaps = 14/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++ + +E + + D+ ++ G + Sbjct: 9 ILVVDDEARIRRLLKMYLERENYKIEEAENGDEAIDKALGNDYDLILLDLM--MPGTDGI 66 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112 E+ R +R P+I ++ + F+ G DD + KP RE + Sbjct: 67 EVCRQVRDKKATPIIMLTAKGEEANRVQGFEVGTDDYIVKPFSPREVVLRVKALLRRSSQ 126 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + N + + D G L +E +L +L K + + Sbjct: 127 TSYLNTDTTAKNVLVFSHLSIDHDAHRVMADGTEVSLTPKEYELLYFLAKTPDKVYDREK 186 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN--KLGFDPVDSKRFLGYSIDW 222 + ++ ++ + V++H+ +LR+KL + + +GY + Sbjct: 187 LLKEVW-QYEFFGDLRTVDTHVKRLREKLNKVSPKAAKKIVTVWGVGYKFEV 237 >gi|150392434|ref|YP_001322483.1| two component transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149952296|gb|ABR50824.1| two component transcriptional regulator, winged helix family [Alkaliphilus metalliredigens QYMF] Length = 229 Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats. Identities = 44/225 (19%), Positives = 92/225 (40%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + D +G +E + E S D+ ++ L Sbjct: 5 ILIVEDEKPIADILKFNLEKEGYRIEMAHDGEDALKKVSEFIPDLVLLDVML--PKLDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R IR +P++ ++ + + G DD + KP RE+LARV A +RR++ Sbjct: 63 QVCRKIRESFSMPILMLTAKEEEVDKVLGLEIGADDYITKPFGMRELLARVNANFRRMEA 122 Query: 122 SNNRAETGPI-----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 G I + + + V L RE +L++L + + Q+ Sbjct: 123 PAGSQGGGKISSGKLSIDFSKYEVKRDQLVIELTSREFELLKFLAIQAEQVFTREQLLKE 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220 ++G ++ + V+ + +LR+K+ + + +KR +GY Sbjct: 183 VWG-YEYYGDIRTVDVTVRRLREKVEDDSGNPKYIQTKRGVGYYF 226 >gi|310642600|ref|YP_003947358.1| two component transcriptional regulator, winged helix family [Paenibacillus polymyxa SC2] gi|309247550|gb|ADO57117.1| Two component transcriptional regulator, winged helix family [Paenibacillus polymyxa SC2] Length = 238 Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats. Identities = 40/232 (17%), Positives = 89/232 (38%), Gaps = 14/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ +G +E E +++ + ++ L G + Sbjct: 8 ILIVDDEERIRRLLRMYLEKEGYEIEEAEDGEIALQKATASDYSIILLDVML--PGMDGI 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR---------V 112 E+ +R P+I ++ + F+ G DD V KP RE++ R Sbjct: 66 EVCTRLRQTKSTPVIMLTAKGEEVNRVQGFEVGADDYVVKPFSPREVIYRVKAILRRSSE 125 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 A + V +N + + D G L +E +L YL + K ++ + Sbjct: 126 TAFLTKEAVPSNSIVFPNLIIEHDAHRVTAGGIEISLTPKEYELLHYLAVSPDKVFSREE 185 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN--KLGFDPVDSKRFLGYSIDW 222 + ++ ++ + V++H+ +LR+KL + + +GY ++ Sbjct: 186 LLKDVW-NYEFFGDLRTVDTHVKRLREKLNKVSPEAAAMITTVWGVGYKLEV 236 >gi|51894442|ref|YP_077133.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] gi|51858131|dbj|BAD42289.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] Length = 234 Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats. Identities = 49/229 (21%), Positives = 97/229 (42%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + F +G +E E ++ D+ ++ L Sbjct: 5 ILVVDDERPIAEILKFSFEREGFEVEMAFDGEEAVAKARASDFDLVILDIML--PKLDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R IR S VP++ ++ + + G DD V KP RE++ARV AI RR +V Sbjct: 63 TVCREIRRFSTVPILMLTAKEDEVDKVLGLELGADDYVTKPFSPRELIARVRAILRRTRV 122 Query: 122 SNNRAETG---------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + I + + ++ L RE +L +LMA+ G+ ++ Sbjct: 123 AESSRSRTAADEILREGDITINLTSYEVRKGDKLLELTPREFELLRFLMAHAGQVFSREA 182 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 + ++G +D + V+ + +LR+KL + + ++R +GY Sbjct: 183 LLEEVWG-YDYYGDVRTVDVTVRRLREKLEENSARPEYIKTRRGVGYYF 230 >gi|297545525|ref|YP_003677827.1| winged helix family two component transcriptional regulator [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296843300|gb|ADH61816.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 227 Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats. Identities = 42/225 (18%), Positives = 92/225 (40%), Gaps = 7/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++DD + + +G +E + + + ++ L G + Sbjct: 7 IYVVDDDKNICEIVSLYLEKEGFEVEQIYDGQTALKKIQTNPPRLVILDIML--PGIDGI 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R +R S+VP+I ++ + + G DD + KP +E++ARV A+ RR + Sbjct: 65 ALCREVRKFSKVPIIMLTAKGDTLDKVLALEIGADDYIVKPFDGKELIARVKAVLRRYEP 124 Query: 122 SNNRAETGPIRVFSDG---RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++ +G+ L +E +L +L + + + Q+ ++ Sbjct: 125 ESDERRAVSYPDLYVSLSEYKVVYKGKNVDLTPKELELLYFLCTHPNRVFTRDQLLENVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 G +D + V+ HI +LR+K+ + + + + +GY + N Sbjct: 185 G-YDYMGDSRTVDVHIKRLREKIGDGINWKL-TTVWGVGYKFEVN 227 >gi|258514364|ref|YP_003190586.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] gi|257778069|gb|ACV61963.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] Length = 235 Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats. Identities = 48/228 (21%), Positives = 88/228 (38%), Gaps = 11/228 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVL 61 +++DD + + +G + L S + D+ ++ L G V Sbjct: 5 LVVDDEQNIIEIIKFNLEREGYQVITARDGTTALQLARSEKPDLIILDIMLPEQDGLAVC 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L + + +P+I +S + + G DD V KP RE++ARV A RR + Sbjct: 65 RLLQQEQKTRGIPIIMVSARGDELDKILGLEMGADDYVTKPFSPRELVARVKARLRRSEE 124 Query: 122 SNNRAETGPIR--------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 E + D E+ G L +E ++ +L GK ++ + Sbjct: 125 VETTPEKPVENTLVRGNLLIDQDRYMIELGGVKQYLTPKEFELIRFLARQPGKVFSRDYL 184 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 I+G +D + V+ HI +R+KL +++ R +GY Sbjct: 185 LEQIWG-YDFVGDSRTVDVHIRHIRQKLEGMDASQQYIETVRGVGYRF 231 >gi|309789878|ref|ZP_07684456.1| two component transcriptional regulator, winged helix family [Oscillochloris trichoides DG6] gi|308228085|gb|EFO81735.1| two component transcriptional regulator, winged helix family [Oscillochloris trichoides DG6] Length = 231 Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats. Identities = 46/226 (20%), Positives = 92/226 (40%), Gaps = 9/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + +G ++ + D+ ++ L Sbjct: 4 ILIVEDERTLAETLRYNLEREGYTVVVASDGVQGLEQARREPPDLIVLDIML--PRLDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + RI+R S VP+I ++ + + G DD ++KP E LAR+ AI RR + Sbjct: 62 SVCRILRQESDVPIIMLTARQDEVDRIAGLELGADDYISKPFSLGEFLARIRAIMRRSER 121 Query: 122 SNNRAETGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 +E + V + R + LP++E +L L+ NRG +++ + Sbjct: 122 QPRTSEREVLNAGALRVDTGSRRAWRDNQELTLPQKEFDLLTCLVRNRGIALSRDLLLER 181 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221 ++G D + V+ HI LR+K+ + + R +GY + Sbjct: 182 VWG-PDFIGDSRTVDVHIRWLREKIEPNPAQPCYIQTVRGVGYRFE 226 >gi|194017268|ref|ZP_03055880.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Bacillus pumilus ATCC 7061] gi|194011136|gb|EDW20706.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Bacillus pumilus ATCC 7061] Length = 242 Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats. Identities = 41/236 (17%), Positives = 92/236 (38%), Gaps = 18/236 (7%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + G + E +S + D+ ++ L + Sbjct: 5 ILVVDDEESIVTLLSYNLERAGYDVVTARDGEEALEKAASEQPDLIVLDLML--PKMDGI 62 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR-------------E 107 E+ + +R P++ ++ + + G DD + KP R + Sbjct: 63 EVCKQLRIQKMMFPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVGARVKAILRRAQ 122 Query: 108 ILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167 + ++ ++ + G +R+ + + Q E L +E +L YL ++G+ Sbjct: 123 QSQPTPTQEEKDEIIADQIKIGELRILPEHYEVYFQEERLELTPKEFELLLYLAKHKGRV 182 Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 + + + SA++ +D A + +V+ HIS LR K+ + + R LGY ++ Sbjct: 183 LTRDLLLSAVW-NYDFAGDTRIVDVHISHLRDKIEKNTKKPTYIKTIRGLGYKLEE 237 >gi|146297008|ref|YP_001180779.1| two component transcriptional regulator [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410584|gb|ABP67588.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 223 Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats. Identities = 36/223 (16%), Positives = 91/223 (40%), Gaps = 6/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD + + +G + ++ + D+ ++ L + Sbjct: 3 ILVIDDDVKICEVIKLYLEKEGFEVIIAHNGSDGITMFKHEMPDLVILDIML--PKKDGY 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 E+ R IR S +P+I ++ + + G DD + KP +E++AR+ + Sbjct: 61 EVCREIRKISNIPIIMLTAKGETFDKVLGLELGADDYIVKPFDPKELIARIKAVLRRTQG 120 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + + +++ ++ +P +E +L +L ++ K + Q+ I+ Sbjct: 121 EVNDEKVVVYPNLTINLTTYEVKLEDKIIEMPPKEIELLYFLASHPNKVFTREQLLDHIW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 G ++ + V+ HI ++R+K+ + + +GY + Sbjct: 181 G-YNFVGDTRTVDVHIKRIREKIEKDKYPWRIKTVWGVGYKFE 222 >gi|20808919|ref|NP_624090.1| response regulator [Thermoanaerobacter tengcongensis MB4] gi|20517580|gb|AAM25694.1| Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Thermoanaerobacter tengcongensis MB4] Length = 226 Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats. Identities = 41/224 (18%), Positives = 90/224 (40%), Gaps = 6/224 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++DD + + +G +E + + ++ L G + Sbjct: 7 IYVVDDDKNICEIVSLYLEKEGFEVEQIYDGQTALRKIQEKPPKLVILDIML--PGIDGI 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L + +R S+VP+I ++ + + G DD + KP +E++ARV A+ RR + Sbjct: 65 ALCKEVRKFSKVPIIMLTAKGDTLDKVLGLEIGADDYIVKPFDGKELVARVKAVLRRYEG 124 Query: 122 SNNRAETGPIRVFS--DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + ++ +G+ L +E +L +L + + + Q+ ++G Sbjct: 125 ESEDKSVSYPDLYVSLSEYKVIYKGKNIDLTPKELELLYFLCTHPNRVFTRDQLLENVWG 184 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 +D + V+ HI +LR+K+ + + +GY + N Sbjct: 185 -YDYMGDSRTVDVHIKRLREKVGEGPNWKL-TTVWGVGYKFEVN 226 >gi|312127494|ref|YP_003992368.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor hydrothermalis 108] gi|311777513|gb|ADQ06999.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor hydrothermalis 108] Length = 223 Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats. Identities = 37/223 (16%), Positives = 92/223 (41%), Gaps = 6/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD + + +G + ++ + + D+ ++ L + Sbjct: 3 ILVIDDDVKICEVIKLYLEKEGFEVVVAHNGIDGIAMFKNEMPDLVILDIML--PKKDGY 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 E+ R +R S +P+I ++ + + G DD + KP +E++AR+ + Sbjct: 61 EVCRELRKISNIPIIMLTAKGETFDKVLGLELGADDYIVKPFDPKELIARIKAVLRRTQG 120 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + V + +++ +V +P +E +L +L ++ K + Q+ I+ Sbjct: 121 EVNDEKVVVYPNLTVNLTTYEVKLEDKVIDMPPKEIELLYFLASHPNKVFTREQLLDHIW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 G ++ + V+ HI ++R+K+ + + +GY + Sbjct: 181 G-YNFVGDTRTVDVHIKRIREKIEKDKYPWKIKTVWGVGYKFE 222 >gi|56419443|ref|YP_146761.1| two-component response regulator [Geobacillus kaustophilus HTA426] gi|56379285|dbj|BAD75193.1| two-component response regulator [Geobacillus kaustophilus HTA426] Length = 224 Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats. Identities = 43/221 (19%), Positives = 98/221 (44%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A +++ +G ++ + + + + + D+ ++ Sbjct: 4 ILIVDDDAHIRELVSHFLNLEGFTIHEAANGKEALDVLETVKVDLVIMDIM--MPEMDGW 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL R +R + VP++ ++ + + F+ G DD + KP E++ARV A+ +R ++ Sbjct: 62 ELCRELRDYDDVPILMLTAKGETRQKVKGFELGADDYLVKPFDPLELVARVKALLKRYRI 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPL-PRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + ++ + G+ P +E +L L + GK + ++ I+G Sbjct: 122 ATSQIVQIGRLSLNRKTYECRLGDQEIFLPPKEFELLFKLASYPGKTFTRDELIEQIWG- 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +D +E V+ HI +LR++ + + R LGY ++ Sbjct: 181 YDYDGDERTVDVHIKRLRERFAQPDSPFSIRTIRGLGYRLE 221 >gi|169831576|ref|YP_001717558.1| two component transcriptional regulator [Candidatus Desulforudis audaxviator MP104C] gi|169638420|gb|ACA59926.1| two component transcriptional regulator, winged helix family [Candidatus Desulforudis audaxviator MP104C] Length = 231 Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 89/224 (39%), Gaps = 6/224 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++++D + + +G + N + + + R D+ ++ L G G V Sbjct: 4 ILVVEDEKHIVELMRYGLEKEGFQVVEANDGDRALEMVHTGRIDLVVLDIMLPGLDGLTV 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L R +P+I +S + + G DD + KP RE++ARV A RR Sbjct: 64 CRLLRQNERTRDIPVIILSARGQELDRVLGLELGADDYITKPFSVRELVARVKARLRRHV 123 Query: 121 VSNNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 +T + E G+ L E +L L + G+ ++ + + Sbjct: 124 PVQEARKTARFGDLVVDPERLAVEAAGKREQLTPTEFELLWVLAGSPGRVFSRELLLQKV 183 Query: 178 YGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220 +G +D + V+ HI +R+KL R +++ R +GY Sbjct: 184 WG-YDYTGDSRTVDVHIRHVRQKLQRLPGSPQYIETVRGVGYRF 226 >gi|297530901|ref|YP_003672176.1| two component transcriptional regulator, winged helix family [Geobacillus sp. C56-T3] gi|297254153|gb|ADI27599.1| two component transcriptional regulator, winged helix family [Geobacillus sp. C56-T3] Length = 226 Score = 162 bits (409), Expect = 4e-38, Method: Composition-based stats. Identities = 43/221 (19%), Positives = 98/221 (44%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A +++ +G ++ + + + + + D+ ++ Sbjct: 6 ILIVDDDAHIRELVSHFLNLEGFTIHEAANGKEALDVLETVKVDLVIMDIM--MPEMDGW 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL R +R + VP++ ++ + + F+ G DD + KP E++ARV A+ +R ++ Sbjct: 64 ELCRELRDYDDVPILMLTAKGETRQKVKGFELGADDYLVKPFDPLELVARVKALLKRYRI 123 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPL-PRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + ++ + G+ P +E +L L + GK + ++ I+G Sbjct: 124 ATSQIVQIGRLSLNRKTYECRLGDQEIFLPPKEFELLFKLASYPGKTFTRDELIEQIWG- 182 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +D +E V+ HI +LR++ + + R LGY ++ Sbjct: 183 YDYDGDERTVDVHIKRLRERFAQPDSPFSIRTIRGLGYRLE 223 >gi|222529445|ref|YP_002573327.1| winged helix family two component transcriptional regulator [Caldicellulosiruptor bescii DSM 6725] gi|222456292|gb|ACM60554.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor bescii DSM 6725] Length = 223 Score = 162 bits (409), Expect = 4e-38, Method: Composition-based stats. Identities = 37/223 (16%), Positives = 92/223 (41%), Gaps = 6/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD + + +G + ++ + + D+ ++ L + Sbjct: 3 ILIIDDDVKICEVIKLYLEKEGFEVVVAHNGMDGIAMFKNEMPDLVILDIML--PKKDGY 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 E+ R +R S +P+I ++ + + G DD + KP +E++AR+ + Sbjct: 61 EVCRELRKISNIPIIMLTAKGETFDKVLGLELGADDYIVKPFDPKELIARIKAVLRRTQG 120 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + V + +++ +V +P +E +L +L ++ K + Q+ I+ Sbjct: 121 EVNDEKVVVYPNLTVNLTTYEVKLEDKVIDMPPKEIELLYFLASHPNKVFTREQLLDHIW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 G ++ + V+ HI ++R+K+ + + +GY + Sbjct: 181 G-YNFVGDTRTVDVHIKRIREKIEKDKYPWKIKTVWGVGYKFE 222 >gi|298491500|ref|YP_003721677.1| winged helix family two component transcriptional regulator ['Nostoc azollae' 0708] gi|298233418|gb|ADI64554.1| two component transcriptional regulator, winged helix family ['Nostoc azollae' 0708] Length = 240 Score = 162 bits (409), Expect = 4e-38, Method: Composition-based stats. Identities = 34/225 (15%), Positives = 85/225 (37%), Gaps = 8/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V++ +E + L D+ ++ L Sbjct: 8 ILVVDDDPAVRNLIQRFLIRQNYQVEAAEDGKAALALFEQFNPDLVILDVNL--PDAIGF 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH----HREILARVAAIYR 117 L + +++ + V ++ ++ + F G DD + KP + A + Sbjct: 66 NLCQDMQSRNGVFVLMLTSRTDESDKIRGFSKGADDYLTKPFGLGELEVRVAAILRRQRV 125 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 R + + R+ + PL E +L +L ++ G+ ++++ + Sbjct: 126 VTTAEQKRLIFEKLMIDPVRREVSFNNQPVPLTALEFDLLHFLASHPGRVWRRSELIQEV 185 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 + ++ ++ VV+ HI ++RKK+ + + + R +GY + Sbjct: 186 WD-YEYVGDQRVVDVHIGQIRKKIEIDAGQPALIQTVRGVGYKFE 229 >gi|317062130|ref|ZP_07926615.1| two component transcriptional regulator [Fusobacterium ulcerans ATCC 49185] gi|313687806|gb|EFS24641.1| two component transcriptional regulator [Fusobacterium ulcerans ATCC 49185] Length = 225 Score = 162 bits (409), Expect = 4e-38, Method: Composition-based stats. Identities = 46/222 (20%), Positives = 99/222 (44%), Gaps = 9/222 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ +G S++ E L D+ ++ Sbjct: 8 ILVVDDEWKIRKLIKDYLVREGYSVDEAGDGEEGLELFFQTTYDIVILDIM--MPKIDGW 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119 + R IR SQVP+I ++ L F+ D+ + KP + + ++A+V A Sbjct: 66 SVCRKIREESQVPIIMLTARADESDQLFGFELETDEYMIKPFNPKLLVAKVKALLRRDGK 125 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 V E G + + + R+ ++ V L +E +L + + N+G +++ +I ++++G Sbjct: 126 IVDKTYLEFGDLVIDTSKREVKLGDVVLELTPKEYDLLYFFIENKGLALSREKILNSVWG 185 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +D + V++HI +LRKK+ + + + + R GY + Sbjct: 186 -WDYFGDSRTVDTHIKRLRKKIGD----NFIQTVRGFGYKFE 222 >gi|138894462|ref|YP_001124915.1| two-component response regulator [Geobacillus thermodenitrificans NG80-2] gi|134265975|gb|ABO66170.1| Two-component response regulator [Geobacillus thermodenitrificans NG80-2] Length = 226 Score = 162 bits (409), Expect = 4e-38, Method: Composition-based stats. Identities = 44/221 (19%), Positives = 98/221 (44%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A +++ +G+++ + + + + + D+ ++ Sbjct: 6 ILVVDDDAHIRELVSHFLSLEGLTIHEAANGKEALDVLETTKVDLVIMDIM--MPEMDGW 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL R +R + VP++ ++ + + F G DD + KP E++ARV A+ +R ++ Sbjct: 64 ELCRELRDYDDVPILMLTAKGETREKVKGFSLGADDYLVKPFDPLELVARVKALLKRYRI 123 Query: 122 SNNRAETGPIRVFSDGRDPEV-QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + ++ + PLP +E +L L + GK + ++ I+G Sbjct: 124 ATSQIVQIGHLSLNRKTYECRLGDVEVPLPPKEFELLFQLASYPGKTFTRDELIEQIWG- 182 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +D +E V+ HI +LR++ + + R LGY ++ Sbjct: 183 YDYEGDERTVDVHIKRLRERFAQPNVPFFIRTIRGLGYRLE 223 >gi|138896293|ref|YP_001126746.1| two-component response regulator [Geobacillus thermodenitrificans NG80-2] gi|196249915|ref|ZP_03148610.1| two component transcriptional regulator, winged helix family [Geobacillus sp. G11MC16] gi|134267806|gb|ABO68001.1| Two-component response regulator [Geobacillus thermodenitrificans NG80-2] gi|196210429|gb|EDY05193.1| two component transcriptional regulator, winged helix family [Geobacillus sp. G11MC16] Length = 234 Score = 162 bits (409), Expect = 4e-38, Method: Composition-based stats. Identities = 47/229 (20%), Positives = 98/229 (42%), Gaps = 11/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + G + E + + + ++ L + Sbjct: 5 ILVVDDEQPIVTLLSYNLEKAGFQVVAAYDGEEALEKVAFEQPALIILDLML--PKLDGV 62 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ + +R + P++ ++ + + G DD + KP RE++ARV AI RR Sbjct: 63 EVCKRLRQQQIMTPILMLTARDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTD 122 Query: 121 VSNNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 ++ AE +F + + V + L +E +L +L ++G+ + + Q+ Sbjct: 123 LAQPAAEPSERLVIGDLEIFPERYEAAVGDKPLELTPKEFELLLHLARHKGRVLTRDQLL 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 SA++ +D A + +V+ HIS LR+K+ + + R LGY ++ Sbjct: 183 SAVW-NYDFAGDTRIVDVHISHLREKIEEDTKKPVYIKTVRGLGYKLEE 230 >gi|73748088|ref|YP_307327.1| DNA-binding response regulator [Dehalococcoides sp. CBDB1] gi|289432114|ref|YP_003461987.1| transcriptional regulator [Dehalococcoides sp. GT] gi|73659804|emb|CAI82411.1| DNA-binding response regulator [Dehalococcoides sp. CBDB1] gi|288945834|gb|ADC73531.1| two component transcriptional regulator, winged helix family [Dehalococcoides sp. GT] Length = 230 Score = 162 bits (409), Expect = 4e-38, Method: Composition-based stats. Identities = 43/228 (18%), Positives = 93/228 (40%), Gaps = 10/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A +++ +G LE + + + ++ + G Sbjct: 6 ILVVEDDATLRELLCYNLAKEGYQLECAEDGLKALSVYRLFKPALVILDVMI--PGIDGF 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH------REILARVAAI 115 EL R+IRA S VP++ ++ S ++ ++G DD ++KP + L R + + Sbjct: 64 ELCRLIRAESSVPILMLTARSSEADKVNGLEAGADDYLSKPFGMKELLARMKALLRRSQM 123 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + G + +F + G +E + +L+ NR + ++ Q+ Sbjct: 124 QNSPAEPAGGLKIGDLEIFIERHLVIRNGVALDFSPKEFDLFSFLVQNRYRVFSREQLLE 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 ++G +D V+ HIS LR+K+ + + + R GY + Sbjct: 184 KVWG-YDYPGGTRTVDVHISWLRQKIEADPSKPRHLITVRGTGYKFEE 230 >gi|270307586|ref|YP_003329644.1| DNA-binding response regulator, two-component system, OmpR family [Dehalococcoides sp. VS] gi|270153478|gb|ACZ61316.1| DNA-binding response regulator, two-component system, OmpR family [Dehalococcoides sp. VS] Length = 256 Score = 162 bits (409), Expect = 4e-38, Method: Composition-based stats. Identities = 42/228 (18%), Positives = 92/228 (40%), Gaps = 10/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A +++ +G +LE + + ++ L G Sbjct: 32 ILVVEDDATLRELLCYNLAKEGYTLECAEDGLKALGTYRLFKPSLVILDVML--PGIDGF 89 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH------REILARVAAI 115 EL R+IR S VP++ ++ S ++ ++G DD ++KP + L R + Sbjct: 90 ELCRLIRTESSVPILMLTARSSESDKVNGLEAGADDYLSKPFGMRELLARMKALLRRSQT 149 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + G + +F + G +E + +++ NR + ++ Q+ Sbjct: 150 QNSQTETTGGLKIGDLEIFIERHLVMRNGVALDFSPKEFDLFSFMVQNRCRVFSREQLLE 209 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 ++G +D V+ HIS LR+K+ + + + R GY + Sbjct: 210 KVWG-YDYPGWTRTVDVHISWLRQKIEADPSSPRHLITVRGTGYKFEE 256 >gi|152975000|ref|YP_001374517.1| two component transcriptional regulator [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152023752|gb|ABS21522.1| two component transcriptional regulator, winged helix family [Bacillus cytotoxicus NVH 391-98] Length = 238 Score = 162 bits (409), Expect = 4e-38, Method: Composition-based stats. Identities = 33/232 (14%), Positives = 88/232 (37%), Gaps = 14/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ + ++ ++ + D+ ++ G+ + Sbjct: 7 ILVVDDEDRIRRLLKMYLERENYVIDEADNGDTALEKALQNDYDLILLDIM--MPGKDGI 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112 E+ + IR P+I ++ + F+ G DD + KP RE + Sbjct: 65 EVCKGIREKKATPVIMLTAKGEEVNRVQGFEVGSDDYIVKPFSPREVVLRVKAVLRRSVS 124 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + + + + + +D G+ L +E +L +L + K + Q Sbjct: 125 TTFFTQDTTTKDVIVFPHLTIDNDAHRITADGQEVNLTPKEYELLLFLAKSPDKVFDREQ 184 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL--RNKLGFDPVDSKRFLGYSIDW 222 + ++ ++ + V++H+ +LR+KL ++ + + +GY + Sbjct: 185 LLKEVW-QYEFFGDLRTVDTHVKRLREKLSKKSPNAAKMIVTVWGVGYKFEV 235 >gi|154496626|ref|ZP_02035322.1| hypothetical protein BACCAP_00918 [Bacteroides capillosus ATCC 29799] gi|150274259|gb|EDN01350.1| hypothetical protein BACCAP_00918 [Bacteroides capillosus ATCC 29799] Length = 224 Score = 162 bits (409), Expect = 4e-38, Method: Composition-based stats. Identities = 51/224 (22%), Positives = 96/224 (42%), Gaps = 5/224 (2%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + ++ +D A ++ DG + L D++ ++ G Sbjct: 4 LILIAEDDADIRALLRLYLEGDGFRVLEAEDGTTALVLAREHAPDMAILDIM--MPGMNG 61 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119 EL R +R +S++P++ +S + + G DD + KP + EI+ARV A R Sbjct: 62 FELTRALRKYSEIPILILSAKSQDNDKILGLNLGADDYIAKPFNPVEIVARVKAQLRRAA 121 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + S++ + + + G PL E +IL LM + G+ K Q++ G Sbjct: 122 RNSSDVITVRELSLDTAAFQLTKSGVPIPLTPMEYKILALLMRSPGRIFTKIQLYEGAIG 181 Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 + ++N + HISKLR+K+ + + + R LGY ++ Sbjct: 182 NY-FEGDDNTMMVHISKLREKIEDDPRNPRYIITVRGLGYKLEK 224 >gi|256752368|ref|ZP_05493229.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus CCSD1] gi|256748779|gb|EEU61822.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus CCSD1] Length = 231 Score = 162 bits (409), Expect = 4e-38, Method: Composition-based stats. Identities = 47/225 (20%), Positives = 90/225 (40%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + +G S+ + + D+ ++ L G Sbjct: 5 ILVVDDEIKILEVVKSYLEREGFSVITETNGNNVLDTFKKEKPDLVILDLML--PGISGE 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL + +R S VP++ ++ ++ F G DD + KP RE++ RV AI RR Sbjct: 63 ELCKRLRQFSNVPILMLTAKVQESDKINGFSIGADDYLTKPFSPRELVMRVKAILRRTTD 122 Query: 122 SNNRAETGPIRVFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 AE +G V L E +IL+ L+ N + + ++ Sbjct: 123 DVPLAEVMSFNNDDLVVDLRAHTVRKKGVVVNLTPNEFKILKILIRNPNRVFTREELIEK 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 + G FD + +++HI LR+K+ + + + +GY Sbjct: 183 VMG-FDYEGYDRTIDAHIKNLRQKIEDDTKNPVYIKTVYGVGYKF 226 >gi|312793633|ref|YP_004026556.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor kristjanssonii 177R1B] gi|312875870|ref|ZP_07735860.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor lactoaceticus 6A] gi|311797351|gb|EFR13690.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor lactoaceticus 6A] gi|312180773|gb|ADQ40943.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor kristjanssonii 177R1B] Length = 223 Score = 162 bits (409), Expect = 4e-38, Method: Composition-based stats. Identities = 37/223 (16%), Positives = 92/223 (41%), Gaps = 6/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD + + +G + ++ + + D+ ++ L + Sbjct: 3 ILVIDDDVKICEVIKLYLEKEGFEVVVAHNGMDGIAMFKNEMPDLVILDIML--PKKDGY 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 E+ R +R S +P+I ++ + + G DD + KP +E++AR+ + Sbjct: 61 EVCRELRKISNIPIIMLTAKGETFDKVLGLELGADDYIVKPFDPKELIARIKAVLRRTQG 120 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + V + +++ +V +P +E +L +L ++ K + Q+ I+ Sbjct: 121 EVNDEKVVIYPNLTVNLTTYEVKLEDKVIDMPPKEIELLYFLASHPNKVFTREQLLDHIW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 G ++ + V+ HI ++R+K+ + + +GY + Sbjct: 181 G-YNFVGDTRTVDVHIKRIREKIEKDKYPWKIKTVWGVGYKFE 222 >gi|159901175|ref|YP_001547422.1| two component transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159894214|gb|ABX07294.1| two component transcriptional regulator, winged helix family [Herpetosiphon aurantiacus ATCC 23779] Length = 232 Score = 162 bits (409), Expect = 4e-38, Method: Composition-based stats. Identities = 46/227 (20%), Positives = 97/227 (42%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ +G ++ + E L D+ ++ L L Sbjct: 4 ILVVDDEPNIREVVGLYLRREGHTVLEASDGEAALRLARQQPPDLVVLDLML--PKVTGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +++ + P+I ++ + G DD V KP RE++ARV A+ RR++ Sbjct: 62 EVCRRLQSDRRTPVIMLTAKSEENDRIIGLGVGADDYVVKPFSPRELVARVEAVLRRVQP 121 Query: 122 SNNRAETGPIRV-------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + RD +V G+ L RE +L +L +R + + Q+ Sbjct: 122 QPDAPPPDERPIELGALRVDPRTRDVQVAGKSISLTAREFDLLYFLARHRERVFTRDQLM 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 ++G + + + + V HI +LR+K+ + + + +GY + Sbjct: 182 ELVWG-YTFSADTSTVTVHIRRLREKIEDDPTAPRYLQTVWGVGYKL 227 >gi|163845708|ref|YP_001633752.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222523414|ref|YP_002567884.1| winged helix family two component transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163666997|gb|ABY33363.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222447293|gb|ACM51559.1| two component transcriptional regulator, winged helix family [Chloroflexus sp. Y-400-fl] Length = 228 Score = 162 bits (409), Expect = 4e-38, Method: Composition-based stats. Identities = 42/222 (18%), Positives = 93/222 (41%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A +++ A G + + + + D+ ++ L G + Sbjct: 5 ILVVDDEASIRNVAKAYLEHAGYRVLCATTGPEGLQMALEEQPDLIVLDLML--PGMDGM 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 E+ +R S V ++ ++ + G DD + KP RE++ARV R Sbjct: 63 EITARLRERSDVYILMLTARSDEMDRVAGLRVGADDYLTKPFSPRELVARVEAILRRQRN 122 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++ + + + R+ G++ L E +L L N + +++ + ++ Sbjct: 123 KTAKSSLMRFTHVEIDPEAREARANGQLLELTPTEFDLLLALARNHNRVLSREDLIEKVW 182 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G D + VV+ ++S+LR+K+ G + + + R +GY Sbjct: 183 GA-DFFGTDRVVDVYVSQLRRKIEAITGENVIRTARGVGYRF 223 >gi|222151385|ref|YP_002560541.1| response regulator protein [Macrococcus caseolyticus JCSC5402] gi|222120510|dbj|BAH17845.1| response regulator protein [Macrococcus caseolyticus JCSC5402] Length = 235 Score = 162 bits (409), Expect = 5e-38, Method: Composition-based stats. Identities = 34/232 (14%), Positives = 85/232 (36%), Gaps = 14/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ +G E L S ++ L G + Sbjct: 5 ILIVDDEDRIRKLAKMYLEREGYETVEAEDGERALELALSENFHCILLDIML--PGMDGI 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112 ++ + +R P+I ++ ++ F+ G DD + KP RE ++ Sbjct: 63 QVCKRLREEKSTPVIMLTAKGEEHNRVEGFEIGADDYIVKPFSPREVVLRVKAILRRSQS 122 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 ++ + + + + +D + L +E +L +L + K + Q Sbjct: 123 TMFLQQEAHAKDLIVFDSLVIDNDAHRVLADNKEVNLTPKEYELLLFLAKSPDKVFDREQ 182 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN--KLGFDPVDSKRFLGYSIDW 222 + ++ ++ + V++H+ +LR+KL + + + +GY + Sbjct: 183 LLKDVW-HYEFYGDLRTVDTHVKRLREKLNKVSPHAANMIHTVWGVGYKFEV 233 >gi|20808829|ref|NP_624000.1| response regulator [Thermoanaerobacter tengcongensis MB4] gi|167039802|ref|YP_001662787.1| two component transcriptional regulator [Thermoanaerobacter sp. X514] gi|307724873|ref|YP_003904624.1| winged helix family two component transcriptional regulator [Thermoanaerobacter sp. X513] gi|20517480|gb|AAM25604.1| Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Thermoanaerobacter tengcongensis MB4] gi|166854042|gb|ABY92451.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter sp. X514] gi|307581934|gb|ADN55333.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter sp. X513] Length = 231 Score = 161 bits (408), Expect = 5e-38, Method: Composition-based stats. Identities = 47/225 (20%), Positives = 90/225 (40%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + +G S+ + + D+ ++ L G Sbjct: 5 ILVVDDEIKILEVVKSYLEREGFSVITETNGNNVLDTFKKEKPDLVILDLML--PGISGE 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL + +R S VP++ ++ ++ F G DD + KP RE++ RV AI RR Sbjct: 63 ELCKRLRQFSNVPILMLTAKVQESDKINGFSIGADDYITKPFSPRELVMRVKAILRRTTD 122 Query: 122 SNNRAETGPIRVFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 AE +G V L E +IL+ L+ N + + ++ Sbjct: 123 DVPLAEVMSFNNDDLVVDLRAHTVRKKGVVVNLTPNEFKILKILIRNPNRVFTREELIEK 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 + G FD + +++HI LR+K+ + + + +GY Sbjct: 183 VMG-FDYEGYDRTIDAHIKNLRQKIEDDTKNPVYIKTVYGVGYKF 226 >gi|257467841|ref|ZP_05631937.1| two component transcriptional regulator [Fusobacterium ulcerans ATCC 49185] Length = 221 Score = 161 bits (408), Expect = 5e-38, Method: Composition-based stats. Identities = 46/222 (20%), Positives = 99/222 (44%), Gaps = 9/222 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ +G S++ E L D+ ++ Sbjct: 4 ILVVDDEWKIRKLIKDYLVREGYSVDEAGDGEEGLELFFQTTYDIVILDIM--MPKIDGW 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119 + R IR SQVP+I ++ L F+ D+ + KP + + ++A+V A Sbjct: 62 SVCRKIREESQVPIIMLTARADESDQLFGFELETDEYMIKPFNPKLLVAKVKALLRRDGK 121 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 V E G + + + R+ ++ V L +E +L + + N+G +++ +I ++++G Sbjct: 122 IVDKTYLEFGDLVIDTSKREVKLGDVVLELTPKEYDLLYFFIENKGLALSREKILNSVWG 181 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +D + V++HI +LRKK+ + + + + R GY + Sbjct: 182 -WDYFGDSRTVDTHIKRLRKKIGD----NFIQTVRGFGYKFE 218 >gi|228990586|ref|ZP_04150551.1| Transcriptional regulatory protein srrA [Bacillus pseudomycoides DSM 12442] gi|228769112|gb|EEM17710.1| Transcriptional regulatory protein srrA [Bacillus pseudomycoides DSM 12442] Length = 247 Score = 161 bits (408), Expect = 5e-38, Method: Composition-based stats. Identities = 34/232 (14%), Positives = 88/232 (37%), Gaps = 14/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ + +++ ++ + D+ ++ G+ + Sbjct: 16 ILIVDDEDRIRRLLKMYLEREQYTIDEADNGDTALEKALQNDYDLILLDIM--MPGKDGI 73 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112 E+ + IR P+I ++ + F+ G DD + KP RE + Sbjct: 74 EVCKGIREKKATPIIMLTAKGEEVNRVQGFEVGSDDYIVKPFSPREVVLRVKAVLRRSVT 133 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + ++ + + + +D G+ L +E +L +L K + Q Sbjct: 134 TTFFTQDTITKDIIVFPHLTIDNDAHRVTADGDEVNLTPKEYELLLFLAKAPDKVFDREQ 193 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF--DPVDSKRFLGYSIDW 222 + ++ ++ + V++H+ +LR+KL K + + +GY + Sbjct: 194 LLKEVW-QYEFFGDLRTVDTHVKRLREKLSKKSADAAKMIVTVWGVGYKFEV 244 >gi|268609558|ref|ZP_06143285.1| two component transcriptional regulator [Ruminococcus flavefaciens FD-1] Length = 235 Score = 161 bits (408), Expect = 5e-38, Method: Composition-based stats. Identities = 49/224 (21%), Positives = 98/224 (43%), Gaps = 8/224 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + D DG S+ + + + D+ ++ L G+ + Sbjct: 10 LIVDDDKNICDLLRLYLEKDGYSVLLCHDGDDAVVKFKALSPDMVLLDIML--PGKDGWQ 67 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR S VP+I I+ + + G DD + KP +E++AR+ A+ RR+ Sbjct: 68 VCREIRKISNVPIIMITAKGETIDKVIGLELGADDYIVKPFDAKEVIARINAVTRRVGTG 127 Query: 123 NNRAETGPIRVF-----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + E + D + +V G++ P +E +L YL +N + + Q+ + Sbjct: 128 ISEPEQKEVHYDKLSVNMDSYELKVNGKIIDTPPKELELLYYLASNPNRVYTRDQLLDEV 187 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +G F+ + ++ HI +LR+KL + + +GY + Sbjct: 188 WG-FEYYGDSRTIDVHIKRLREKLEGISDKWSLKTVWGVGYKFE 230 >gi|138895848|ref|YP_001126301.1| two-component response regulator [Geobacillus thermodenitrificans NG80-2] gi|196248740|ref|ZP_03147440.1| two component transcriptional regulator, winged helix family [Geobacillus sp. G11MC16] gi|134267361|gb|ABO67556.1| Two-component response regulator [Geobacillus thermodenitrificans NG80-2] gi|196211616|gb|EDY06375.1| two component transcriptional regulator, winged helix family [Geobacillus sp. G11MC16] Length = 241 Score = 161 bits (408), Expect = 5e-38, Method: Composition-based stats. Identities = 43/231 (18%), Positives = 91/231 (39%), Gaps = 14/231 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ + ++ + DV ++ L G+ + Sbjct: 10 ILVVDDEERIRRLLKMYLERENYVIDEAGDGNVALEKALANDYDVILLDLML--PGKDGI 67 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IR H P+I ++ + F+ G DD + KP RE++ RV A+ RR Sbjct: 68 EVCKEIREHKTTPIIMLTAKGEESNRVQGFEVGTDDYIVKPFSPREVVLRVKALLRRAAN 127 Query: 122 SNNRA---------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + + +D V G+ L +E +L +L + K + Q Sbjct: 128 ATYAPVETTTKDVLVFPHLTIDNDAHRVTVDGKEVSLTPKEYELLLFLARSPDKVFDREQ 187 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN--KLGFDPVDSKRFLGYSID 221 + ++ ++ + V++HI +LR+KL + + +GY + Sbjct: 188 LLKEVW-HYEFFGDLRTVDTHIKRLREKLNKASPQAGKMIVTVWGVGYKFE 237 >gi|89096455|ref|ZP_01169348.1| two component transcriptional regulator, winged helix family protein [Bacillus sp. NRRL B-14911] gi|89089309|gb|EAR68417.1| two component transcriptional regulator, winged helix family protein [Bacillus sp. NRRL B-14911] Length = 234 Score = 161 bits (408), Expect = 5e-38, Method: Composition-based stats. Identities = 49/231 (21%), Positives = 93/231 (40%), Gaps = 13/231 (5%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + +L+DD +++ A +G L + L S D+ ++ L Sbjct: 5 LILLVDDDPDIQNIQKAYLSKEGFRLAFAATGAEAVQLAGSLEPDLIILDVAL--PDMDG 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ RIIR ++VP++ +S + G DD + KP ++A+V + RR K Sbjct: 63 FEVCRIIRTKTKVPILFLSGREDDIDQIIGHRIGGDDYITKPFSPPVLVAKVKSHIRRYK 122 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPR---------RERRILEYLMANRGKRVAKT 171 + + + + + + R +E ++L L N G+ + Sbjct: 123 ELSGSPKAASNGRALIFGELAIDRDCCEVTREGKPISLAAKEFQLLCCLAENAGRVFSAE 182 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221 +F +I+G D + V HIS LRKK+ + + + R +GY + Sbjct: 183 HLFDSIWGK-DSFGDIRTVMVHISNLRKKIEQDPARPEYIITVRGMGYKFN 232 >gi|156742742|ref|YP_001432871.1| two component transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156234070|gb|ABU58853.1| two component transcriptional regulator, winged helix family [Roseiflexus castenholzii DSM 13941] Length = 231 Score = 161 bits (408), Expect = 5e-38, Method: Composition-based stats. Identities = 47/225 (20%), Positives = 100/225 (44%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D +++ +G + L S + D+ ++ L G L Sbjct: 6 LLIVEDEDRLRNLLRGYLEREGFRIVQARDGVQALSLARSEQPDLIILDLML--PGIDGL 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ +R S ++ ++ + + G DD + KP RE++ARV A++RR + Sbjct: 64 EVCHRLRTFSDAYVLMLTAKAEEMDRVVGLEIGADDYLTKPFSPRELVARVRAMFRRPRH 123 Query: 122 SNNRA-----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 +++ ++GP+ + + + GE L E +L L + G+ + Q+ Sbjct: 124 ADDEPAPLLVQSGPLTIDVARHEALLAGEPLKLTNLEYALLSVLASAPGRVFTRAQLIER 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 ++G D +++V++ HI+ LRKKL + + + R +GY Sbjct: 184 VWGN-DYFGDDHVIDVHIANLRKKLGDDPTRPTFIMTVRGIGYRF 227 >gi|163847988|ref|YP_001636032.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222525870|ref|YP_002570341.1| winged helix family two component transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163669277|gb|ABY35643.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222449749|gb|ACM54015.1| two component transcriptional regulator, winged helix family [Chloroflexus sp. Y-400-fl] Length = 231 Score = 161 bits (408), Expect = 5e-38, Method: Composition-based stats. Identities = 49/226 (21%), Positives = 95/226 (42%), Gaps = 9/226 (3%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + +++DD +++ G + + R D+ ++ L Sbjct: 5 LILIVDDENRLRELIQRYLIQAGFRVAHAGDGLSALAQARTLRPDLIILDLMLPA--LDG 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +R S ++ ++ + + G DD + KP RE++ARV A++RR + Sbjct: 63 FEVCRQLRTFSDAYILMLTAKVEEPDRVKGLEVGADDYLVKPFSPRELVARVRAMFRRPR 122 Query: 121 VSNNRAETGPI-----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 S E + + S+ + G L E R+L L A G+ ++ Q+ Sbjct: 123 QSGYIDEPSTMTVGPLTIDSESHTVRLDGVPINLTPLEYRLLTILAAAPGRVFSRAQLLD 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 ++G + +E+V+E HI+ LRKKL + + + R +GY Sbjct: 183 QVWGN-NYFGDEHVLEVHIANLRKKLGDDPARPRFIFTVRSVGYRF 227 >gi|260430664|ref|ZP_05784636.1| phosphate regulon transcriptional regulatory protein PhoB [Silicibacter lacuscaerulensis ITI-1157] gi|260418105|gb|EEX11363.1| phosphate regulon transcriptional regulatory protein PhoB [Silicibacter lacuscaerulensis ITI-1157] Length = 228 Score = 161 bits (408), Expect = 5e-38, Method: Composition-based stats. Identities = 49/224 (21%), Positives = 97/224 (43%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++ +G ++ + + A D+ ++ L G + Sbjct: 7 ILVVEDEPSQREIIRYNLEAEGFTVVQAENGDEALLQIKEAPPDLILLDWML--PGVSGI 64 Query: 62 ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 E+ R ++ A +P+I +S + ++G DD V KP E++ARV + +RR Sbjct: 65 EICRQLKMTAATRAIPVIMLSARSDEVDKVRGLETGADDYVTKPYSVIELMARVKSQFRR 124 Query: 119 LKVSNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + I + ++ G+ L E R+L M G+ + Q+ Sbjct: 125 TRPAAVGERLEYDDIVLDAETHRVTRAGQDIKLGPTEFRLLSTFMEKPGRVWNREQLLDR 184 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G D V+ V+ HI +LRK L + G DP+ + R GY++ Sbjct: 185 VWGR-DIYVDTRTVDVHIGRLRKALTVRGGDDPIRTVRGAGYAL 227 >gi|15894977|ref|NP_348326.1| response regulator [Clostridium acetobutylicum ATCC 824] gi|15024664|gb|AAK79666.1|AE007679_12 Response regulator (CheY-like receiver domain and DNA-binding HTH domain) [Clostridium acetobutylicum ATCC 824] gi|325509114|gb|ADZ20750.1| Response regulator (CheY-like receiver domain and DNA-binding HTH domain) [Clostridium acetobutylicum EA 2018] Length = 232 Score = 161 bits (408), Expect = 5e-38, Method: Composition-based stats. Identities = 43/225 (19%), Positives = 94/225 (41%), Gaps = 5/225 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 +++DD + ++G + + ++ L G V Sbjct: 6 ILVVDDEEHIVKLIKFNLENNGYKVITAADGGEALEKAKGEVPQLVLLDLMLPVMDGYDV 65 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118 R ++ S +P+I I+ + + G DD + KP RE++ARV A + Sbjct: 66 CREIRRDQSISNMPVIMITAKGEELDKILGLELGADDYITKPFSVRELVARVKAVLRRTK 125 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + + G I++ + +GE L +E +L+ L+ N+G+ + + + I+ Sbjct: 126 VDYIDKTFKFGNIQIDFQRHNVTKEGEKVELTLKEFELLQVLIKNKGRVMTRDFLLDKIW 185 Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 G ++ E V+ H+ LR+K+ + +++ R +GY ++ Sbjct: 186 G-YEYIGETRTVDVHVRHLRQKIEDDDKNPKYIETIRGIGYRFNY 229 >gi|323701174|ref|ZP_08112849.1| two component transcriptional regulator, winged helix family [Desulfotomaculum nigrificans DSM 574] gi|323533776|gb|EGB23640.1| two component transcriptional regulator, winged helix family [Desulfotomaculum nigrificans DSM 574] Length = 230 Score = 161 bits (408), Expect = 5e-38, Method: Composition-based stats. Identities = 47/226 (20%), Positives = 99/226 (43%), Gaps = 9/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD ++ +G ++ + + S D+ ++ Sbjct: 4 ILIADDEERIRQLVRLYLEAEGFTVCEAEDGQQVLDIVKSQPIDLVLLDLM--MPVLDGW 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118 + +++R ++P++ ++ + D G DD + KP RE++ARV A+ RR Sbjct: 62 TVCKMLRRERKIPIVMLTAKGEENDRVLGLDLGADDYIVKPFSTRELVARVKAVLRRAEG 121 Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 K +++ ++ R+ E+ GEV L +E +L L N G+ ++ Q+ Sbjct: 122 IGEKHNSHILSYPGFKLNELTRELEMHGEVINLTTKEFELLAMLAKNPGRIFSRDQLLEM 181 Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 ++G FD + V++HI++LR KL + + + R +GY + Sbjct: 182 VWG-FDYCGDSRTVDTHINRLRSKLERQPNQDEYIKTIRGVGYKFE 226 >gi|15644403|ref|NP_229455.1| response regulator DrrA [Thermotoga maritima MSB8] gi|4982229|gb|AAD36722.1|AE001807_13 response regulator DrrA [Thermotoga maritima MSB8] Length = 247 Score = 161 bits (408), Expect = 6e-38, Method: Composition-based stats. Identities = 42/230 (18%), Positives = 88/230 (38%), Gaps = 14/230 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + +G + E + + D+ ++ L G Sbjct: 14 ILVVDDDPAILELVGYNLSKEGYEVLKAYDGEEALKIANDEDVDMFIVDIML--PGIDGF 71 Query: 62 ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILAR 111 EL R IR+ P+I +S + + G DD + KP + I R Sbjct: 72 ELVRKIRSMEKYKNTPVIFLSAKGEEFDKVLGLELGADDYITKPFSVRELLARVKAIFRR 131 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 ++ + + + + + + + +V+G+ L E +L +L N GK ++ Sbjct: 132 LSTATQSKEERPKKIIAKDLEIDVEKYEVKVRGKKVNLTPLEFELLRFLAENEGKVFSRD 191 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220 + ++G +D + V+ HI +LR K+ + + + R GY Sbjct: 192 VLLDKLWG-YDYYGDTRTVDVHIRRLRTKIEEDPSNPKYIITVRGKGYKF 240 >gi|332973098|gb|EGK11033.1| DNA-binding response regulator [Desmospora sp. 8437] Length = 239 Score = 161 bits (408), Expect = 6e-38, Method: Composition-based stats. Identities = 46/229 (20%), Positives = 98/229 (42%), Gaps = 12/229 (5%) Query: 1 MFVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEK 59 + +L+DD + + +G + + E L R D+ ++ L + Sbjct: 3 VLLLVDDEPSILEMLEVTLRKEGFREILTARTGEEGVRLAREGRPDLVLLDVML--PDLE 60 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-------REILARV 112 E+ R +R+ + VP++ ++ + L G DD + KP + + L R Sbjct: 61 GFEVCRRLRSFTTVPILFLTARSNDLDKLMGLGIGGDDYITKPFNPLEVVARVKAQLRRQ 120 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 ++++ + G R+ V+G P P RE ++L +L + + +K+Q Sbjct: 121 QLAGQQIREETRIHDWGRFRMDEGAGQLTVEGTAVPCPAREFQLLSFLCRHPNQIFSKSQ 180 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++ ++G + E+N V H+ +LR+K+ + + + R LGY + Sbjct: 181 LYEQVWGE-ESLGEDNTVMVHVRRLREKIEPDPAKPRYLVTVRGLGYKL 228 >gi|283798623|ref|ZP_06347776.1| DNA-binding response regulator ResD [Clostridium sp. M62/1] gi|291073609|gb|EFE10973.1| DNA-binding response regulator ResD [Clostridium sp. M62/1] gi|295090650|emb|CBK76757.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Clostridium cf. saccharolyticum K10] Length = 237 Score = 161 bits (408), Expect = 6e-38, Method: Composition-based stats. Identities = 38/233 (16%), Positives = 85/233 (36%), Gaps = 16/233 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + + E + + ++ ++ L G Sbjct: 7 ILIVDDDENIAELISLYLTKECYETKIVGDGEEALKVFPVFKPNLILLDLML--PGMDGY 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH------------HREIL 109 ++ R +R+ SQVP+I +S + + + G DD + KP R Sbjct: 65 QVCRELRSSSQVPIIMLSAKGEIFDKVLGLELGADDYMIKPFDSKELVARVKAVLRRYQA 124 Query: 110 ARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 A E + V G +P +E +L +L ++ + Sbjct: 125 APQPQEPAGPDQKGQYVEFPDLIVNLTNYSVIYNGHSIEMPPKELELLYFLASSPNQVFT 184 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + Q+ I+G ++ + V+ HI +LR+K+++ + + +GY + Sbjct: 185 REQLLDHIWG-YEYIGDTRTVDVHIKRLREKIKDH-EKWALTTVWGIGYKFEV 235 >gi|221311269|ref|ZP_03593116.1| hypothetical protein Bsubs1_18031 [Bacillus subtilis subsp. subtilis str. 168] gi|291485812|dbj|BAI86887.1| hypothetical protein BSNT_04948 [Bacillus subtilis subsp. natto BEST195] Length = 248 Score = 161 bits (408), Expect = 6e-38, Method: Composition-based stats. Identities = 48/229 (20%), Positives = 92/229 (40%), Gaps = 10/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +++DD + D + +G + S E + + + D+ ++ + G Sbjct: 17 ILIVDDEKAIVDMIKRVLEKEGYRNILDAASAEEAIPVVKANKVDLIVLDVMMG--GMSG 74 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E +IR +S P+ ++ S L F G DD + KP + E+ AR+ A +R Sbjct: 75 FEACTLIREYSDAPIFFLTARSSDADKLSGFAVGADDYITKPFNPLELAARIRAHLKRTY 134 Query: 121 VSNNRAETGPIRVFSDGRDPEVQG-----EVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 S + P+ E + ++L+Y + ++K QI+ Sbjct: 135 QSKETSSNQTYTYDYFTFSPQNAELIVGGEAVACSAQLLQLLQYFCEHPNVVLSKDQIYE 194 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223 ++G + + N V HI KLR+K+ + + + + R LGY N Sbjct: 195 KVWG-YPSYGDNNTVMVHIRKLREKIERDPSNPEYIVTVRGLGYRFIPN 242 >gi|163939390|ref|YP_001644274.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|229010879|ref|ZP_04168076.1| Transcriptional regulatory protein srrA [Bacillus mycoides DSM 2048] gi|229132382|ref|ZP_04261236.1| Transcriptional regulatory protein srrA [Bacillus cereus BDRD-ST196] gi|229166418|ref|ZP_04294174.1| Transcriptional regulatory protein srrA [Bacillus cereus AH621] gi|163861587|gb|ABY42646.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] gi|228616992|gb|EEK74061.1| Transcriptional regulatory protein srrA [Bacillus cereus AH621] gi|228651088|gb|EEL07069.1| Transcriptional regulatory protein srrA [Bacillus cereus BDRD-ST196] gi|228750553|gb|EEM00382.1| Transcriptional regulatory protein srrA [Bacillus mycoides DSM 2048] Length = 238 Score = 161 bits (408), Expect = 6e-38, Method: Composition-based stats. Identities = 36/232 (15%), Positives = 92/232 (39%), Gaps = 14/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ + ++E ++ + + D+ ++ G+ + Sbjct: 7 ILIVDDEDRIRRLLKMYLEREQYTIEEADNGDTALEMALQNDYDLILLDIM--MPGKDGI 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV--------- 112 E+ + IR P+I ++ + F+ G DD + KP RE++ RV Sbjct: 65 EVCKGIREKKATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRRAVP 124 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + + + + + +D G L +E +L +L + K + Q Sbjct: 125 TTFFTQDTTTKDVTVFPHLTIDNDAHRVTADGNEVNLTPKEYELLLFLAKSPDKVFDREQ 184 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL--RNKLGFDPVDSKRFLGYSIDW 222 + ++ ++ + V++H+ +LR+KL ++ + + +GY + Sbjct: 185 LLKEVW-QYEFFGDLRTVDTHVKRLREKLSKQSPDAAKMIVTVWGVGYKFEV 235 >gi|186684226|ref|YP_001867422.1| two component transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186466678|gb|ACC82479.1| two component transcriptional regulator, winged helix family [Nostoc punctiforme PCC 73102] Length = 241 Score = 161 bits (408), Expect = 6e-38, Method: Composition-based stats. Identities = 34/225 (15%), Positives = 85/225 (37%), Gaps = 8/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V++ +E + L D+ ++ L Sbjct: 8 ILVVDDDPAVRNLIQRFLIKQNYQVEAAEDGKTALALFEQFNPDLVILDVNL--PDVTGF 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH----HREILARVAAIYR 117 L + +++ + V ++ ++ + F G DD + KP + A + Sbjct: 66 NLCQEMQSRNGVFVLMLTSRADEADKIRGFAKGADDYLTKPFGLGELEVRVGAILRRQRV 125 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 R + + R+ + + PL E +L +L ++ G+ + ++ + Sbjct: 126 ITTAEQKRLVFEKLMIDPVRREVALNNQAVPLTALEFDLLHFLASHPGRVWRRAELIQEV 185 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 + ++ ++ VV+ HI ++RKK+ + + + R +GY + Sbjct: 186 WD-YEYVGDQRVVDVHIGQIRKKIEIDASQPALIQTVRGVGYKFE 229 >gi|209527087|ref|ZP_03275602.1| two component transcriptional regulator, winged helix family [Arthrospira maxima CS-328] gi|209492515|gb|EDZ92855.1| two component transcriptional regulator, winged helix family [Arthrospira maxima CS-328] Length = 233 Score = 161 bits (407), Expect = 6e-38, Method: Composition-based stats. Identities = 44/233 (18%), Positives = 87/233 (37%), Gaps = 14/233 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G S + + + R DV ++ L G L Sbjct: 3 ILIVEDEPEIALLIRRTLEAEGFSCQISQNGLSALEIFQQQRPDVIILDLML--PGLDGL 60 Query: 62 ELPRIIRAHSQVPL---IGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA----- 113 E+ IR + ++ + +G DD + KP RE++ARV Sbjct: 61 EVCARIRQQPGQKDPYILMLTAKGEEIDRIVGLSTGADDYMVKPFSPRELVARVRALLRR 120 Query: 114 --AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + + T I E L E +L ++ G+ ++T Sbjct: 121 SLRQGGQTQTYQTAHFTVDIDQRKANFQNHGNTEPLDLTTLEFNLLATFLSYPGRVWSRT 180 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223 Q+ ++G D +E VV++H+++LRKK+ + + + +GY + N Sbjct: 181 QLIDKLWG-DDFFGDERVVDTHVARLRKKVEPDPSHPTFIKTVTGVGYKFEDN 232 >gi|295399015|ref|ZP_06808997.1| two component transcriptional regulator, winged helix family [Geobacillus thermoglucosidasius C56-YS93] gi|312110379|ref|YP_003988695.1| transcriptional regulator [Geobacillus sp. Y4.1MC1] gi|294978481|gb|EFG54077.1| two component transcriptional regulator, winged helix family [Geobacillus thermoglucosidasius C56-YS93] gi|311215480|gb|ADP74084.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y4.1MC1] Length = 238 Score = 161 bits (407), Expect = 6e-38, Method: Composition-based stats. Identities = 39/232 (16%), Positives = 89/232 (38%), Gaps = 14/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ + ++ ++ + DV ++ L G + Sbjct: 7 ILVVDDEERIRRLLKMYLERENYIIDEADNGDDALTKALENDYDVILLDLML--PGRDGI 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-------- 113 E+ + IR P+I ++ + F++G DD + KP RE++ RV Sbjct: 65 EVCKEIREKKATPIIMLTAKGEESNRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRAAN 124 Query: 114 -AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + + + +D V G+ L +E +L +L + K + Q Sbjct: 125 TMYVLADTTAKDVLVFPHLTIDNDAHRVTVDGQEVNLTPKEYELLLFLAKSPDKVFDREQ 184 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN--KLGFDPVDSKRFLGYSIDW 222 + ++ ++ + V++HI +LR+KL + + +GY + Sbjct: 185 LLKEVW-HYEFFGDLRTVDTHIKRLREKLNKVSPTAAKMIVTVWGVGYKFEV 235 >gi|312794585|ref|YP_004027508.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor kristjanssonii 177R1B] gi|312877755|ref|ZP_07737707.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor lactoaceticus 6A] gi|311795474|gb|EFR11851.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor lactoaceticus 6A] gi|312181725|gb|ADQ41895.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor kristjanssonii 177R1B] Length = 230 Score = 161 bits (407), Expect = 7e-38, Method: Composition-based stats. Identities = 45/227 (19%), Positives = 98/227 (43%), Gaps = 8/227 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + E S D+ ++ L Sbjct: 6 ILVVDDEKPIVDIIKFNLEKEGYKVTASYDGEDALNRIKSENFDMVLLDVML--PKLDGF 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + +R S VP+I I+ + + G DD + KP RE++AR+ A RR Sbjct: 64 SVCKKVREFSDVPIIMITAKADEVDKVLGLELGADDYITKPFGIRELIARIRANLRRTAQ 123 Query: 122 SNNRAETGPI----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 S ++ + + + + G+V L RE +L++LM+ +G+ ++ ++ + Sbjct: 124 SASQDGKVLKAGALTLNPETFEVKKNGKVIELTVREYELLKFLMSQKGQVFSREELLEKV 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223 + ++ + V+ + +LR+K+ + + + +KR +GY + N Sbjct: 184 WD-YEYYGDVRTVDVTVRRLREKIEDNPSEPNFILTKRGIGYYFNPN 229 >gi|42780675|ref|NP_977922.1| DNA-binding response regulator ResD [Bacillus cereus ATCC 10987] gi|65318844|ref|ZP_00391803.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bacillus anthracis str. A2012] gi|118477032|ref|YP_894183.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|170689223|ref|ZP_02880419.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0465] gi|196036824|ref|ZP_03104213.1| DNA-binding response regulator ResD [Bacillus cereus W] gi|217959052|ref|YP_002337600.1| DNA-binding response regulator ResD [Bacillus cereus AH187] gi|218902686|ref|YP_002450520.1| DNA-binding response regulator ResD [Bacillus cereus AH820] gi|229138269|ref|ZP_04266864.1| Transcriptional regulatory protein srrA [Bacillus cereus BDRD-ST26] gi|229155143|ref|ZP_04283255.1| Transcriptional regulatory protein srrA [Bacillus cereus ATCC 4342] gi|229602173|ref|YP_002865982.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0248] gi|254682360|ref|ZP_05146221.1| DNA-binding response regulator ResD [Bacillus anthracis str. CNEVA-9066] gi|254721256|ref|ZP_05183046.1| DNA-binding response regulator ResD [Bacillus anthracis str. A1055] gi|254733775|ref|ZP_05191489.1| DNA-binding response regulator ResD [Bacillus anthracis str. Western North America USA6153] gi|254740534|ref|ZP_05198225.1| DNA-binding response regulator ResD [Bacillus anthracis str. Kruger B] gi|254753923|ref|ZP_05205958.1| DNA-binding response regulator ResD [Bacillus anthracis str. Vollum] gi|254759019|ref|ZP_05211046.1| DNA-binding response regulator ResD [Bacillus anthracis str. Australia 94] gi|300117496|ref|ZP_07055286.1| DNA-binding response regulator ResD [Bacillus cereus SJ1] gi|42736595|gb|AAS40530.1| DNA-binding response regulator ResD [Bacillus cereus ATCC 10987] gi|118416257|gb|ABK84676.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|170666778|gb|EDT17545.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0465] gi|195990553|gb|EDX54532.1| DNA-binding response regulator ResD [Bacillus cereus W] gi|217068293|gb|ACJ82543.1| DNA-binding response regulator ResD [Bacillus cereus AH187] gi|218535347|gb|ACK87745.1| DNA-binding response regulator ResD [Bacillus cereus AH820] gi|228628270|gb|EEK84985.1| Transcriptional regulatory protein srrA [Bacillus cereus ATCC 4342] gi|228645161|gb|EEL01398.1| Transcriptional regulatory protein srrA [Bacillus cereus BDRD-ST26] gi|229266581|gb|ACQ48218.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0248] gi|298725331|gb|EFI65983.1| DNA-binding response regulator ResD [Bacillus cereus SJ1] gi|324325592|gb|ADY20852.1| DNA-binding response regulator ResD [Bacillus thuringiensis serovar finitimus YBT-020] Length = 250 Score = 161 bits (407), Expect = 7e-38, Method: Composition-based stats. Identities = 35/232 (15%), Positives = 91/232 (39%), Gaps = 14/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ + ++E ++ + + D+ ++ G+ + Sbjct: 19 ILIVDDEDRIRRLLKMYLEREQYTIEEADNGDTALEMALQNDYDLILLDLM--MPGKDGI 76 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV--------- 112 E+ + +R P+I ++ + F+ G DD + KP RE++ RV Sbjct: 77 EVCKGVREKKATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRRSVP 136 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + + + + + +D G L +E +L +L K + Q Sbjct: 137 TTFFTQDTTTKDVTVFPHLTIDNDAHRVTADGNEVNLTPKEYELLLFLAKAPDKVFDREQ 196 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL--RNKLGFDPVDSKRFLGYSIDW 222 + ++ ++ + V++H+ +LR+KL ++ + + +GY + Sbjct: 197 LLKEVW-QYEFFGDLRTVDTHVKRLREKLSKKSPDAAKMIVTVWGVGYKFEV 247 >gi|239628828|ref|ZP_04671859.1| two component transcriptional regulator [Clostridiales bacterium 1_7_47_FAA] gi|239518974|gb|EEQ58840.1| two component transcriptional regulator [Clostridiales bacterium 1_7_47FAA] Length = 235 Score = 161 bits (407), Expect = 7e-38, Method: Composition-based stats. Identities = 44/231 (19%), Positives = 96/231 (41%), Gaps = 14/231 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A + + + E + + ++ ++ L G Sbjct: 7 ILIVDDDANIAELISLYLMKECYETMIVGDGEEALRVFPEFKPNLVLLDLML--PGMDGY 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 ++ R +R+ SQVP+I +S + + + G DD + KP +E++ARV A+ RR + Sbjct: 65 QVCRELRSGSQVPVIMLSAKGEIFDKVLGLELGADDYMIKPFDSKELVARVKAVLRRYQA 124 Query: 121 ---------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 E + V G +P +E +L +L ++ + + Sbjct: 125 APAPAPSSTQQGEYVEYPDLIVNLTNYSVIYNGHSVEMPPKELELLYFLASSPNQVFTRE 184 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 Q+ I+G ++ + V+ HI +LR+K+++ + + + +GY + Sbjct: 185 QLLDHIWG-YEYIGDTRTVDVHIKRLREKIKDHTNWA-ITTVWGIGYKFEV 233 >gi|219667720|ref|YP_002458155.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219537980|gb|ACL19719.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 233 Score = 161 bits (407), Expect = 7e-38, Method: Composition-based stats. Identities = 51/226 (22%), Positives = 93/226 (41%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD + + D+ L + + ++ G + Sbjct: 6 ILIADDEVELAELVKDFLSDEQYEALVARDGHEALELFRMNQPQLVILDIM--MPGLDGM 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IRA S VP+I +S + + G DD + KP E++ARV A RR K+ Sbjct: 64 EVCRRIRAESNVPIIMLSAKKAEVDKILGLGLGADDYIVKPFSPGEVVARVKAQLRRFKM 123 Query: 122 SNNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 S + + G + + G L +E +L +L + + + + QIF+ Sbjct: 124 SAVPEPKTRLLSYSGLEIDVQGYEAALAGRPLELTTKEFELLRFLALHPNQVLTREQIFA 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++G F+E+ + N V HI KLR+K+ + + + +GY Sbjct: 184 NVWG-FNESGDLNTVTVHIKKLREKIESDLANPTFIKTVWGVGYKF 228 >gi|148270266|ref|YP_001244726.1| two component transcriptional regulator [Thermotoga petrophila RKU-1] gi|170288963|ref|YP_001739201.1| two component transcriptional regulator [Thermotoga sp. RQ2] gi|147735810|gb|ABQ47150.1| two component transcriptional regulator, winged helix family [Thermotoga petrophila RKU-1] gi|170176466|gb|ACB09518.1| two component transcriptional regulator, winged helix family [Thermotoga sp. RQ2] Length = 239 Score = 161 bits (407), Expect = 7e-38, Method: Composition-based stats. Identities = 43/230 (18%), Positives = 89/230 (38%), Gaps = 14/230 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + +G + E + + D+ ++ L G Sbjct: 6 ILVVDDDPAILELVGYNLSKEGYEVLKAYDGEEALKIANDEDVDMFIVDIML--PGIDGF 63 Query: 62 ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILAR 111 EL R IRA + P+I +S + + G DD + KP + I R Sbjct: 64 ELVRKIRAIEKYKNTPVIFLSAKGEEFDKVLGLELGADDYITKPFSVRELLARVKAIFRR 123 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 ++ + + + + + + + +V+G+ L E +L +L N GK ++ Sbjct: 124 LSTATQSKEERPKKIIAKDLEIDVEKYEVKVRGKKVNLTPLEFELLRFLAENEGKVFSRD 183 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220 + ++G +D + V+ HI +LR K+ + + + R GY Sbjct: 184 VLLDKLWG-YDYYGDTRTVDVHIRRLRTKIEEDPSNPKYIITVRGKGYKF 232 >gi|148657588|ref|YP_001277793.1| two component transcriptional regulator [Roseiflexus sp. RS-1] gi|148569698|gb|ABQ91843.1| two component transcriptional regulator, winged helix family [Roseiflexus sp. RS-1] Length = 236 Score = 161 bits (407), Expect = 7e-38, Method: Composition-based stats. Identities = 42/223 (18%), Positives = 82/223 (36%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++D +G + ++ + D+ ++ Sbjct: 4 ILVVDDEPALRDMLRLYLEQEGFHVVEAGDGRRALYVARVEKPDLVVLDLM--MPEMGGY 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 E R S+ P+I ++ + + G DD V KP + RE++AR+ ++ Sbjct: 62 EFLRAFAKESRTPVIVLTAKIEDTDKILGLELGADDYVTKPFNVRELIARIRAVLRRTQQ 121 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + I + GR V G L E IL LMA G+ ++ + + Sbjct: 122 TPLEPDVLRAADIVLDRTGRTVRVGGRYVDLTPSEFAILATLMAAPGQVFSRLDLLDRVS 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 G E ++ HI LR K+ +++ +GY Sbjct: 182 G-DAFEGSERTIDVHIRNLRAKIEADPRHPQYIETVYGMGYRF 223 >gi|295696419|ref|YP_003589657.1| two component transcriptional regulator, winged helix family [Bacillus tusciae DSM 2912] gi|295412021|gb|ADG06513.1| two component transcriptional regulator, winged helix family [Bacillus tusciae DSM 2912] Length = 233 Score = 161 bits (407), Expect = 7e-38, Method: Composition-based stats. Identities = 42/229 (18%), Positives = 85/229 (37%), Gaps = 11/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ +G +E + + V ++ L Sbjct: 6 ILVVDDEERIRRLVRMYLERNGFEVEEAEDGRTALEMALANDYAVIVLDLML--PELDGR 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ +R P+I ++ + F+ G DD V KP RE++ RV A+ +R+ Sbjct: 64 EVCAQLRKQKDTPVIMLTAAGDEMNRIHGFELGADDYVVKPFSPRELVMRVKALIKRVHQ 123 Query: 122 SNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 E + F R G+ L +E +L YL K + ++ Sbjct: 124 GPAEHELTQVFTFPHLTINLESRKVTADGQDVSLTPKEYELLCYLAQRPEKVFTREELLR 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGF--DPVDSKRFLGYSIDW 222 ++ + ++ V++HI +LR+KL + + +GY + Sbjct: 184 DVW-NYQFYGDQRTVDTHIKRLREKLGKASQPAAAMIVTVWGVGYKFEV 231 >gi|229058210|ref|ZP_04196598.1| Transcriptional regulatory protein srrA [Bacillus cereus AH603] gi|228720074|gb|EEL71658.1| Transcriptional regulatory protein srrA [Bacillus cereus AH603] Length = 238 Score = 161 bits (407), Expect = 7e-38, Method: Composition-based stats. Identities = 36/232 (15%), Positives = 91/232 (39%), Gaps = 14/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ + ++E ++ + + D+ ++ G+ + Sbjct: 7 ILIVDDEDRIRRLLKMYLEREQYTIEEADNGDTALEMALQNDYDLILLDIM--MPGKDGI 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV--------- 112 E+ + IR P+I ++ + F+ G DD + KP RE++ RV Sbjct: 65 EVCKGIREKKATPIIMLTAKGEEINRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRRAVP 124 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + + + + + +D G L +E +L +L K + Q Sbjct: 125 TTFFTQDTTTKDVTVFPHLTIDNDAHRVTADGNEVNLTPKEYELLLFLAKAPDKVFDREQ 184 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL--RNKLGFDPVDSKRFLGYSIDW 222 + ++ ++ + V++H+ +LR+KL ++ + + +GY + Sbjct: 185 LLKEVW-QYEFFGDLRTVDTHVKRLREKLSKQSPDAAKMIVTVWGVGYKFEV 235 >gi|89099082|ref|ZP_01171961.1| ResD [Bacillus sp. NRRL B-14911] gi|89086212|gb|EAR65334.1| ResD [Bacillus sp. NRRL B-14911] Length = 238 Score = 161 bits (407), Expect = 7e-38, Method: Composition-based stats. Identities = 35/232 (15%), Positives = 84/232 (36%), Gaps = 14/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ + +E DV ++ G+ + Sbjct: 7 ILVVDDEVRIRRLLKMYLERENYVIEEAGDGSEALEKAFETDYDVILLDLM--MPGKDGI 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112 E+ R +R P+I ++ + F++G DD + KP RE + Sbjct: 65 EVCRELRERKATPVIMLTAKGEEVNRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRSST 124 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + + + + + +D G+ L +E +L +L + K + Q Sbjct: 125 TSYLQTETAAKDVIVFRHLTIDNDAHRVIADGKEVSLTPKEYELLYFLAKSPDKVFDREQ 184 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG--FDPVDSKRFLGYSIDW 222 + ++ ++ + V++H+ +LR+KL + + +GY + Sbjct: 185 LLKEVW-QYEFFGDLRTVDTHVKRLREKLNKVSEQAARMIVTVWGVGYKFEV 235 >gi|254478803|ref|ZP_05092170.1| response regulator receiver domain protein [Carboxydibrachium pacificum DSM 12653] gi|214035258|gb|EEB75965.1| response regulator receiver domain protein [Carboxydibrachium pacificum DSM 12653] Length = 231 Score = 161 bits (407), Expect = 8e-38, Method: Composition-based stats. Identities = 47/225 (20%), Positives = 90/225 (40%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + +G S+ + + D+ ++ L G Sbjct: 5 ILVVDDEIKILEVVKSYLEREGFSVITETNGNNVLDTFKKEKPDLVILDLML--PGISGE 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL + +R S VP++ ++ ++ F G DD + KP RE++ RV AI RR Sbjct: 63 ELCKRLRQFSNVPILMLTAKVQESDKINGFSIGADDYITKPFSPRELVMRVKAILRRTTD 122 Query: 122 SNNRAETGPIRVFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 AE +G V L E +IL+ L+ N + + ++ Sbjct: 123 DVPLAEVMSFNNDDLVVDLRAHTVRKKGVVVNLTPNEFKILKILIRNPNRVFTREELIEK 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 + G FD + +++HI LR+K+ + + + +GY Sbjct: 183 VMG-FDYEGYDRTIDAHIKNLRQKIEDDTKNPVYIRTVYGVGYKF 226 >gi|300932843|ref|ZP_07148099.1| two-component system response regulator MtrA [Corynebacterium resistens DSM 45100] Length = 224 Score = 161 bits (407), Expect = 8e-38, Method: Composition-based stats. Identities = 44/220 (20%), Positives = 87/220 (39%), Gaps = 5/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + +G + D+ ++ L G + Sbjct: 5 ILVVDDDPAIAEMLTIVLQGEGFETVVVGDGNEAVNAARNHNPDLILLDVML--PGMNGV 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R IR S VP++ ++ +SG DD V+KP +E++ARV A RR Sbjct: 63 DVCRAIREDSTVPIVMLTARTDTVDVGLGLESGADDYVHKPFKPKELVARVRARLRRNTD 122 Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + G EV PL E +L L + + + ++ ++G Sbjct: 123 EKPEKLEISGLTIDVSGHQVTRGDEVIPLTPIEFDLLLTLASKPRQVFTREELLEKVWG- 181 Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219 + ++ + +V HI +LR K+ + + + R +GY Sbjct: 182 YRKSSDTRLVNVHIQRLRSKIEVDPDDPRIIQTVRGVGYK 221 >gi|168182605|ref|ZP_02617269.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum Bf] gi|170761342|ref|YP_001787844.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] gi|237795967|ref|YP_002863519.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] gi|169408331|gb|ACA56742.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] gi|182674265|gb|EDT86226.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum Bf] gi|229260789|gb|ACQ51822.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] Length = 232 Score = 161 bits (407), Expect = 8e-38, Method: Composition-based stats. Identities = 48/227 (21%), Positives = 94/227 (41%), Gaps = 10/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + ++G + + + + D+ ++ L G Sbjct: 6 ILIVDDEEHICELIKFNLENNGYNCICALNGIEALNIAKEEKPDLILLDLML--PGMDGY 63 Query: 62 ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AI 115 E+ + IR + P+I I+ + + G DD + KP RE++ARV Sbjct: 64 EVCKEIRKDNNTATTPIIMITAKGEELDKVLGLELGADDYITKPFSVREMVARVKAVLRR 123 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + + G I V + GE L +E +LE L+ N+GK + + + Sbjct: 124 RTTINIESKSYILGNIVVDFEKHSLTKAGEKIELTLKEFELLEVLIKNKGKVMTRDFLLD 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 I+G ++ E V+ HI LRKK+ + +++ R +GY + Sbjct: 184 RIWG-YEYIGETRTVDVHIRHLRKKIEDDDKNPKFIETIRGIGYRFN 229 >gi|333025498|ref|ZP_08453562.1| putative two-component system response regulator [Streptomyces sp. Tu6071] gi|332745350|gb|EGJ75791.1| putative two-component system response regulator [Streptomyces sp. Tu6071] Length = 264 Score = 161 bits (407), Expect = 8e-38, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 90/228 (39%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V++ +G +E ++ D+ ++ G L Sbjct: 35 ILVVDDEPAVREALRRSLVFEGYGVEVAADGHEALQKAAATPPDLVVLDI--QMPGMDGL 92 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL--------ARV 112 R +RA S VP++ ++ ++ + D+G DD + KP E+ Sbjct: 93 TAARRLRATGSTVPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSS 152 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 A+ ++ G +R+ R+ G L R E +LE +A+ + + + Q Sbjct: 153 YAVAQQAADDEETLAFGDLRMNLATREVTRGGRAVELTRTEFTLLEMFLAHPRQVLTREQ 212 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I ++G FD N ++ ++ LR+K V + R +GY + Sbjct: 213 ILKTVWG-FDFEPSSNSLDVYVMYLRRKTEAGGEPRLVHTVRGVGYVL 259 >gi|291548597|emb|CBL24859.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus torques L2-14] Length = 233 Score = 160 bits (406), Expect = 8e-38, Method: Composition-based stats. Identities = 38/229 (16%), Positives = 88/229 (38%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + + E S + ++ ++ L G Sbjct: 7 ILIVDDDENIAELISLYLTKECFDTKLVYDGEDALAAFDSYQPNLILLDLML--PGIDGY 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI---------LARV 112 ++ R IR+ + P+I +S + + + G DD + KP +E+ +V Sbjct: 65 QVCREIRSKAATPIIMLSAKSEVFDKVLGLELGADDYIMKPFDPKEMVARVRAVLRRYQV 124 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 AE + + G +P +E +L L A+ + + Q Sbjct: 125 GQQNDTSVEKTKCAEFDGLTINLTNYSVVCDGHPVDMPPKELELLYCLAASPNQVFTREQ 184 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + I+G ++ + V+ HI +LR+K+++ ++ + + +GY + Sbjct: 185 LLDRIWG-YEYIGDTRTVDVHIKRLREKIKDHPHWN-ISTVWGIGYKFE 231 >gi|296331198|ref|ZP_06873671.1| two-component response regulator YvrH involved in cell wall processes (YvrG) [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675924|ref|YP_003867596.1| two-component response regulator [Bacillus subtilis subsp. spizizenii str. W23] gi|296151649|gb|EFG92525.1| two-component response regulator YvrH involved in cell wall processes (YvrG) [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305414168|gb|ADM39287.1| two-component response regulator involved in cell wall processes (paired with YvrG) [Bacillus subtilis subsp. spizizenii str. W23] Length = 248 Score = 160 bits (406), Expect = 8e-38, Method: Composition-based stats. Identities = 49/229 (21%), Positives = 91/229 (39%), Gaps = 10/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +++DD + D + +G L S E + + + D+ ++ + G Sbjct: 17 ILIVDDEKAIVDMIKRVLEKEGYRNLLDAASAEEAIPVVKANKVDLIVLDVMMG--GMSG 74 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E +IR +S P+ ++ S L F G DD + KP + E+ AR+ A +R Sbjct: 75 FEACTLIREYSDAPIFFLTARSSDADKLSGFAVGADDYITKPFNPLELAARIRAHLKRTY 134 Query: 121 VSNNRAETGPIRVFSDGRDPEVQG-----EVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 S P+ E + ++L+Y + ++K QI+ Sbjct: 135 QSKETNSNQTYTYDYFTFSPQNAELIVGGEAVACSAQLLQLLQYFCEHPNVVLSKDQIYE 194 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223 ++G + + N V HI KLR+K+ + + + + R LGY N Sbjct: 195 KVWG-YPSYGDNNTVMVHIRKLREKIERDPSNPEYIVTVRGLGYRFIPN 242 >gi|300864039|ref|ZP_07108940.1| two-component response regulator [Oscillatoria sp. PCC 6506] gi|300337962|emb|CBN54086.1| two-component response regulator [Oscillatoria sp. PCC 6506] Length = 229 Score = 160 bits (406), Expect = 8e-38, Method: Composition-based stats. Identities = 41/225 (18%), Positives = 93/225 (41%), Gaps = 8/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ G +E + L D ++ L Sbjct: 6 ILVVDDDPAIRNLIHRYLSQQGYQVESAGDGQTALGLFEQLNPDFVILDVNL--PDTTGY 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 +L + +++ + V ++ ++ + F+SGVDD + KP EI RV AI +R ++ Sbjct: 64 KLCQEMQSRTGVFVVMLTSRTDEADKIKGFESGVDDYITKPFSLVEIGFRVGAILKRKRI 123 Query: 122 SNNRAETGPIR----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + I + R+ + G+ L E +L L + G+ + ++ + Sbjct: 124 VTPAEQQSLIFGPLAIDPVRREVMLSGQTVSLTALEFDLLYCLASKPGRVWRRAELLQEV 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221 + ++ ++ VV+ HI ++R+K+ + + R +GY + Sbjct: 184 WD-YEYVGDQRVVDVHIGQIRRKIEPDANQPSMIQTVRGVGYKFE 227 >gi|251796377|ref|YP_003011108.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247544003|gb|ACT01022.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 238 Score = 160 bits (406), Expect = 8e-38, Method: Composition-based stats. Identities = 41/232 (17%), Positives = 90/232 (38%), Gaps = 14/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ +G ++ E L + + ++ L G + Sbjct: 8 ILVVDDEERIRRLLKMYLEKEGYLIDEAEDGETALRLATVTDYALILLDVML--PGIDGV 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-------- 113 E+ +R P+I ++ + F+ G DD V KP RE++ RV Sbjct: 66 EVCSRLRQVKATPVIMLTAKGEEMNRVQGFEVGADDYVVKPFSPREVIYRVKAILRRSSA 125 Query: 114 -AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 A + S+N + + D G+ L +E +L YL + K ++ + Sbjct: 126 TAFLTKEVNSSNNIVFPHLVIEHDAHRVSAGGQEVSLTPKEYELLHYLAVSPDKVFSREE 185 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN--KLGFDPVDSKRFLGYSIDW 222 + ++ ++ + V++H+ +LR+KL + + +GY ++ Sbjct: 186 LLKDVW-NYEFFGDLRTVDTHVKRLREKLNKVSPDAASMITTVWGVGYKLEV 236 >gi|312134119|ref|YP_004001457.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor owensensis OL] gi|311774170|gb|ADQ03657.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor owensensis OL] Length = 230 Score = 160 bits (406), Expect = 8e-38, Method: Composition-based stats. Identities = 47/227 (20%), Positives = 99/227 (43%), Gaps = 8/227 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + E S D+ ++ L Sbjct: 6 ILVVDDEKPIVDIIKFNLEKEGYKVTASYDGEDALNRIKSENYDMVLLDVML--PKIDGF 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + +R S VP+I I+ + + G DD + KP RE++ARV A RR + Sbjct: 64 SVCKKVREFSDVPIIMITAKADEVDKVLGLELGADDYITKPFGIRELIARVRANLRRTAL 123 Query: 122 SNNRAETGPI----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 S+ + + + + + G+V L RE +L++LM+ +G+ ++ ++ + Sbjct: 124 SSVQDGKVLKAGALTLNPETFEVKKNGKVVELTVREYELLKFLMSQKGQVFSREELLEKV 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223 +G ++ + V+ + +LR+K+ + + +KR +GY + N Sbjct: 184 WG-YEYYGDVRTVDVTVRRLREKIEDNPSEPTFILTKRGIGYYFNPN 229 >gi|281412572|ref|YP_003346651.1| two component transcriptional regulator, winged helix family [Thermotoga naphthophila RKU-10] gi|281373675|gb|ADA67237.1| two component transcriptional regulator, winged helix family [Thermotoga naphthophila RKU-10] Length = 239 Score = 160 bits (406), Expect = 8e-38, Method: Composition-based stats. Identities = 43/230 (18%), Positives = 90/230 (39%), Gaps = 14/230 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + +G + E + + D+ ++ L G Sbjct: 6 ILVVDDDPAILELVGYNLSKEGYEVLKAYDGEEALKIANDEDVDMFIVDIML--PGIDGF 63 Query: 62 ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILAR 111 EL R IRA + P+I +S + + G DD + KP + + R Sbjct: 64 ELVRKIRAIEKYKNTPVIFLSAKGEEFDKVLGLELGADDYITKPFSVRELLARVKAVFRR 123 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 ++A + + + + + + + +V+G+ L E +L +L N GK ++ Sbjct: 124 LSAATQSKEERPKKIIARDLEIDVEKYEVKVRGKKVNLTPLEFELLRFLAENEGKVFSRD 183 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220 + ++G +D + V+ HI +LR K+ + + + R GY Sbjct: 184 VLLDKLWG-YDYYGDTRTVDVHIRRLRTKIEEDPSNPKYIITVRGKGYKF 232 >gi|229189657|ref|ZP_04316672.1| Transcriptional regulatory protein srrA [Bacillus cereus ATCC 10876] gi|228593921|gb|EEK51725.1| Transcriptional regulatory protein srrA [Bacillus cereus ATCC 10876] Length = 238 Score = 160 bits (406), Expect = 9e-38, Method: Composition-based stats. Identities = 35/232 (15%), Positives = 91/232 (39%), Gaps = 14/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ + ++E ++ + + D+ ++ G+ + Sbjct: 7 ILIVDDEDRIRRLLKMYLEREQYTIEEADNGDTALEMALQNDYDLILLDLM--MPGKDGI 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV--------- 112 E+ + +R P+I ++ + F+ G DD + KP RE++ RV Sbjct: 65 EVCKGVREKKATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRRAVP 124 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + + + + + +D G L +E +L +L K + Q Sbjct: 125 TTFFTQDTTTKDVTVFPHLTIDNDAHRVTADGNEVNLTPKEYELLLFLAKAPDKVFDREQ 184 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL--RNKLGFDPVDSKRFLGYSIDW 222 + ++ ++ + V++H+ +LR+KL ++ + + +GY + Sbjct: 185 LLKEVW-QYEFFGDLRTVDTHVKRLREKLSKKSPDAAKMIVTVWGVGYKFEV 235 >gi|260587419|ref|ZP_05853332.1| DNA-binding response regulator ResD [Blautia hansenii DSM 20583] gi|331083699|ref|ZP_08332810.1| hypothetical protein HMPREF0992_01734 [Lachnospiraceae bacterium 6_1_63FAA] gi|260542286|gb|EEX22855.1| DNA-binding response regulator ResD [Blautia hansenii DSM 20583] gi|330403910|gb|EGG83462.1| hypothetical protein HMPREF0992_01734 [Lachnospiraceae bacterium 6_1_63FAA] Length = 234 Score = 160 bits (406), Expect = 9e-38, Method: Composition-based stats. Identities = 45/229 (19%), Positives = 95/229 (41%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + N E SS ++ ++ L G Sbjct: 7 ILIVDDDNNIAELISLYLTKECFDTHIVNDGEAALNAFSSFAPNLILLDLML--PGMDGY 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R IR S VP+I +S + + + G DD + KP +E++ARV A+ RR + Sbjct: 65 QVCREIRQKSNVPIIMLSAKGEIFDKVLGLELGADDYIIKPFDSKELVARVKAVLRRYQP 124 Query: 122 SN--------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + E + + G+ +P +E +L +L ++ + + Q+ Sbjct: 125 NVAPATQPSGKYVEYPDLAINLTNYSVIYYGKQLDMPPKELELLYFLASSPNQVFTREQL 184 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 I+G ++ + V+ HI +LR+K+++ + + +GY + Sbjct: 185 LDHIWG-YEYIGDTRTVDVHIKRLREKIKDHPSWAL-STVWGIGYKFEV 231 >gi|160902340|ref|YP_001567921.1| two component transcriptional regulator [Petrotoga mobilis SJ95] gi|160359984|gb|ABX31598.1| two component transcriptional regulator, winged helix family [Petrotoga mobilis SJ95] Length = 242 Score = 160 bits (406), Expect = 9e-38, Method: Composition-based stats. Identities = 45/229 (19%), Positives = 91/229 (39%), Gaps = 11/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI--GKGEK 59 ++++D + + +G + S + D ++ L G Sbjct: 6 IMIVEDDPAISEMLSLNLTKEGYEVITAVSADEALKKLEEKDTDFFIVDIMLPGSMDGFD 65 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 ++ + + + P++ +S + + G DD V KP + RE++AR+ +I+RR Sbjct: 66 LIRILKSSEDYRNTPVLILSAKDDAADKVAGLELGSDDYVTKPFNVRELIARIKSIFRRQ 125 Query: 120 KVSNNRAETGPI-------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 S E GP + ++ + V G L E +L +L N GK ++ Sbjct: 126 AASAQMKEEGPKKITAKDLIIDTERLEVWVGGNPVSLTPLEFDLLVFLAKNEGKVFSRDV 185 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220 + ++G +D + V+ HI +LR K+ + + + R GY Sbjct: 186 LLDKLWG-YDYYGDTRTVDVHIRRLRTKIEEDPSNPKYIITVRGKGYKF 233 >gi|291547005|emb|CBL20113.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus sp. SR1/5] Length = 229 Score = 160 bits (406), Expect = 9e-38, Method: Composition-based stats. Identities = 53/225 (23%), Positives = 97/225 (43%), Gaps = 10/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD L+ G DG+ ++ E + D+ ++ L LE Sbjct: 6 LVVDDEKLIVKGLRFSLEQDGMEVDCAYDGEEALEKAKAGEYDIILLDLML--PKMDGLE 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + IR S VP+I ++ + + G DD V KP + E+ AR+ AI RR Sbjct: 64 VCQQIREFSNVPIIMLTAKGEDMDKILGLEYGADDYVTKPFNILEVKARIKAIIRRAGSK 123 Query: 123 NNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 ++ E +GR + G+ L +E +LE L+ N K ++ + + Sbjct: 124 QDKQEKAKTVEVGELKLDCEGRRVFISGKEINLTAKEFDVLELLVFNPNKVYSRENLLNI 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++G ++ + V+ HI +LR+K+ N V +K +GY Sbjct: 184 VWG-YEYPGDVRTVDVHIRRLREKIEANPSEPKYVHTKWGVGYYF 227 >gi|297584465|ref|YP_003700245.1| winged helix family two component transcriptional regulator [Bacillus selenitireducens MLS10] gi|297142922|gb|ADH99679.1| two component transcriptional regulator, winged helix family [Bacillus selenitireducens MLS10] Length = 237 Score = 160 bits (406), Expect = 9e-38, Method: Composition-based stats. Identities = 36/231 (15%), Positives = 85/231 (36%), Gaps = 14/231 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ + ++ + E D+ ++ G + Sbjct: 7 ILVVDDEERIRRLLKMYLERENYDVDDAENGEIALKKALDYDYDLIVLDLM--MPGMDGI 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112 E+ IR P++ ++ + F++G DD + KP RE A Sbjct: 65 EVCEKIRKQKATPIVMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRAST 124 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 A + + + + + +D + L +E +L YL + K A+ Q Sbjct: 125 TAFLQTETSTKDVLVFPHLTIDNDAHRVTADDKHISLTPKEYELLHYLASAPDKVFAREQ 184 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN--KLGFDPVDSKRFLGYSID 221 + ++ ++ + V++H+ +LR+KL + + + +GY + Sbjct: 185 LLKDVW-NYEFFGDLRTVDTHVKRLREKLNKVSPEAGNMISTVWGVGYKFE 234 >gi|1575577|gb|AAC44436.1| DNA-binding response regulator [Thermotoga maritima] Length = 239 Score = 160 bits (406), Expect = 9e-38, Method: Composition-based stats. Identities = 42/230 (18%), Positives = 88/230 (38%), Gaps = 14/230 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + +G + E + + D+ ++ L G Sbjct: 6 ILVVDDDPAILELVGYNLSKEGYEVLKAYDGEEALKIANDEDVDMFIVDIML--PGIDGF 63 Query: 62 ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILAR 111 EL R IR+ P+I +S + + G DD + KP + I R Sbjct: 64 ELVRKIRSMEKYKNTPVIFLSAKGEEFDKVLGLELGADDYITKPFSVRELLARVKAIFRR 123 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 ++ + + + + + + + +V+G+ L E +L +L N GK ++ Sbjct: 124 LSTATQSKEERPKKIIAKDLEIDVEKYEVKVRGKKVNLTPLEFELLRFLAENEGKVFSRD 183 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220 + ++G +D + V+ HI +LR K+ + + + R GY Sbjct: 184 VLLDKLWG-YDYYGDTRTVDVHIRRLRTKIEEDPSNPKYIITVRGKGYKF 232 >gi|255767758|ref|NP_391202.2| two-component response regulator YvrH involved in cell wall processes YvrG [Bacillus subtilis subsp. subtilis str. 168] gi|321312870|ref|YP_004205157.1| two-component response regulator YvrH involved in cell wall processes (YvrG) [Bacillus subtilis BSn5] gi|251757511|sp|P94504|YVRH_BACSU RecName: Full=Transcriptional regulatory protein yvrH gi|225185386|emb|CAB15312.2| two-component response regulator YvrH involved in cell wall processes [YvrG] [Bacillus subtilis subsp. subtilis str. 168] gi|320019144|gb|ADV94130.1| two-component response regulator YvrH involved in cell wall processes (YvrG) [Bacillus subtilis BSn5] Length = 237 Score = 160 bits (406), Expect = 9e-38, Method: Composition-based stats. Identities = 48/229 (20%), Positives = 92/229 (40%), Gaps = 10/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +++DD + D + +G + S E + + + D+ ++ + G Sbjct: 6 ILIVDDEKAIVDMIKRVLEKEGYRNILDAASAEEAIPVVKANKVDLIVLDVMMG--GMSG 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E +IR +S P+ ++ S L F G DD + KP + E+ AR+ A +R Sbjct: 64 FEACTLIREYSDAPIFFLTARSSDADKLSGFAVGADDYITKPFNPLELAARIRAHLKRTY 123 Query: 121 VSNNRAETGPIRVFSDGRDPEVQG-----EVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 S + P+ E + ++L+Y + ++K QI+ Sbjct: 124 QSKETSSNQTYTYDYFTFSPQNAELIVGGEAVACSAQLLQLLQYFCEHPNVVLSKDQIYE 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223 ++G + + N V HI KLR+K+ + + + + R LGY N Sbjct: 184 KVWG-YPSYGDNNTVMVHIRKLREKIERDPSNPEYIVTVRGLGYRFIPN 231 >gi|21222153|ref|NP_627932.1| response regulator [Streptomyces coelicolor A3(2)] gi|7211008|emb|CAB76988.1| putative response regulator [Streptomyces coelicolor A3(2)] Length = 256 Score = 160 bits (406), Expect = 9e-38, Method: Composition-based stats. Identities = 41/223 (18%), Positives = 80/223 (35%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V + G ++ + R D+ ++ L G L Sbjct: 31 ILVVDDDPTVAEVVAGYLDRAGYRVDRAGDGPEALARAAGHRPDLVVLDLML--PGMDGL 88 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--ILARVAAIYRRL 119 E+ R +R VP+I ++ + + G DD V KP RE + R Sbjct: 89 EVCRRLRGQGPVPVIMLTARGDEDDRVLGLEVGADDYVTKPFSPRELVLRVESVLRRTRP 148 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + R G L RE +L + + + G+ A+ ++ ++G Sbjct: 149 APAPRPPSAAGLTADPAARRATKDGAELALTLREFDLLAFFLRHPGRAFAREELMREVWG 208 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221 + + V H+ +LR K+ + + + +GY D Sbjct: 209 WD--FGDLSTVTVHVRRLRGKVEDDPARPRLIQTVWGVGYRFD 249 >gi|221315596|ref|ZP_03597401.1| hypothetical protein BsubsN3_17947 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221320512|ref|ZP_03601806.1| hypothetical protein BsubsJ_17915 [Bacillus subtilis subsp. subtilis str. JH642] gi|221324796|ref|ZP_03606090.1| hypothetical protein BsubsS_18066 [Bacillus subtilis subsp. subtilis str. SMY] Length = 293 Score = 160 bits (406), Expect = 9e-38, Method: Composition-based stats. Identities = 48/229 (20%), Positives = 92/229 (40%), Gaps = 10/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +++DD + D + +G + S E + + + D+ ++ + G Sbjct: 62 ILIVDDEKAIVDMIKRVLEKEGYRNILDAASAEEAIPVVKANKVDLIVLDVMMG--GMSG 119 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E +IR +S P+ ++ S L F G DD + KP + E+ AR+ A +R Sbjct: 120 FEACTLIREYSDAPIFFLTARSSDADKLSGFAVGADDYITKPFNPLELAARIRAHLKRTY 179 Query: 121 VSNNRAETGPIRVFSDGRDPEVQG-----EVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 S + P+ E + ++L+Y + ++K QI+ Sbjct: 180 QSKETSSNQTYTYDYFTFSPQNAELIVGGEAVACSAQLLQLLQYFCEHPNVVLSKDQIYE 239 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223 ++G + + N V HI KLR+K+ + + + + R LGY N Sbjct: 240 KVWG-YPSYGDNNTVMVHIRKLREKIERDPSNPEYIVTVRGLGYRFIPN 287 >gi|253583326|ref|ZP_04860524.1| two component transcriptional regulator [Fusobacterium varium ATCC 27725] gi|251833898|gb|EES62461.1| two component transcriptional regulator [Fusobacterium varium ATCC 27725] Length = 221 Score = 160 bits (406), Expect = 9e-38, Method: Composition-based stats. Identities = 45/222 (20%), Positives = 99/222 (44%), Gaps = 9/222 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ +G S++ E L D+ ++ Sbjct: 4 ILVVDDEWKIRKLIKDYLVREGYSVDEAGDGEEGLDLFFQTTYDIVILDIM--MPKIDGW 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119 + R IR SQVP+I ++ L F+ D+ + KP + + ++A+V A Sbjct: 62 SVCRKIREESQVPIIMLTARADESDQLFGFELETDEYMIKPFNPKLLVAKVKALLRRDGK 121 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 V E G + + + R+ ++ + L +E +L + + N+G +++ +I ++++G Sbjct: 122 IVDKTYLEFGDLIIDTSKREVKLGDVILELTPKEYDLLYFFIENKGLALSREKILNSVWG 181 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +D + V++HI +LRKK+ + + + + R GY + Sbjct: 182 -WDYFGDSRTVDTHIKRLRKKIGD----NFIQTVRGFGYKFE 218 >gi|307297684|ref|ZP_07577490.1| two component transcriptional regulator, winged helix family [Thermotogales bacterium mesG1.Ag.4.2] gi|306916944|gb|EFN47326.1| two component transcriptional regulator, winged helix family [Thermotogales bacterium mesG1.Ag.4.2] Length = 239 Score = 160 bits (406), Expect = 9e-38, Method: Composition-based stats. Identities = 42/230 (18%), Positives = 85/230 (36%), Gaps = 14/230 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + +G + E + D+ ++ L G Sbjct: 6 ILVVDDEPSIVELLTFNLKKEGYEVLKAYDAEEALKIAEDNETDMFIVDIML--PGMDGF 63 Query: 62 ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILAR 111 EL R +RA Q P+I +S + + G DD + KP R + R Sbjct: 64 ELVRNLRATEKFRQTPVIFLSAKSEEFDKVLGLELGADDYITKPFSVREVLARIRAVFRR 123 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + + + + + + ++ + V+ + L E +L +L N GK ++ Sbjct: 124 IQQSAQAKEERPKKILARDLEIDTEKYEVRVRNRMVNLTPLEFELLRFLAENEGKVFSRD 183 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 + ++G +D + V+ HI +LR K+ + + R GY Sbjct: 184 VLLDKLWG-YDYYGDTRTVDVHIRRLRTKIEEDASTPKYIITVRGKGYKF 232 >gi|229084576|ref|ZP_04216846.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock3-44] gi|228698726|gb|EEL51441.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock3-44] Length = 238 Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 34/232 (14%), Positives = 87/232 (37%), Gaps = 14/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ + +++ ++ + D+ ++ G+ + Sbjct: 7 ILIVDDEDRIRRLLKMYLEREQYTIDEADNGDEALEKALQNDYDLILLDIM--MPGKDGI 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112 E+ + IR P+I ++ + F+ G DD + KP RE + Sbjct: 65 EVCKGIREKKATPIIMLTAKGEEVNRVQGFEVGSDDYIVKPFSPREVVLRVKAVLRRSVT 124 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + + + + + +D G+ L +E +L +L K + Q Sbjct: 125 TTFFTQDTTTKDVIVFPHLTIDNDAHRVTADGDEVNLTPKEYELLLFLAKAPDKVFDREQ 184 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKL--GFDPVDSKRFLGYSIDW 222 + ++ ++ + V++H+ +LR+KL K + + +GY + Sbjct: 185 LLKEVW-QYEFFGDLRTVDTHVKRLREKLSKKSSDAAKMIVTVWGVGYKFEV 235 >gi|30261572|ref|NP_843949.1| DNA-binding response regulator ResD [Bacillus anthracis str. Ames] gi|47526771|ref|YP_018120.1| DNA-binding response regulator ResD [Bacillus anthracis str. 'Ames Ancestor'] gi|47569149|ref|ZP_00239837.1| transcriptional regulatory protein resD [Bacillus cereus G9241] gi|49184403|ref|YP_027655.1| DNA-binding response regulator ResD [Bacillus anthracis str. Sterne] gi|49477248|ref|YP_035693.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52143871|ref|YP_082957.1| response regulator [Bacillus cereus E33L] gi|165872643|ref|ZP_02217273.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0488] gi|167634461|ref|ZP_02392782.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0442] gi|167641616|ref|ZP_02399862.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0193] gi|170706385|ref|ZP_02896846.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0389] gi|177651599|ref|ZP_02934388.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0174] gi|190568062|ref|ZP_03020972.1| DNA-binding response regulator ResD [Bacillus anthracis Tsiankovskii-I] gi|196038975|ref|ZP_03106282.1| DNA-binding response regulator ResD [Bacillus cereus NVH0597-99] gi|206978271|ref|ZP_03239149.1| DNA-binding response regulator ResD [Bacillus cereus H3081.97] gi|222095206|ref|YP_002529266.1| response regulator [Bacillus cereus Q1] gi|225863439|ref|YP_002748817.1| DNA-binding response regulator ResD [Bacillus cereus 03BB102] gi|227815677|ref|YP_002815686.1| DNA-binding response regulator ResD [Bacillus anthracis str. CDC 684] gi|228914150|ref|ZP_04077768.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228926607|ref|ZP_04089676.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228932862|ref|ZP_04095729.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228945176|ref|ZP_04107532.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228984655|ref|ZP_04144828.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229029255|ref|ZP_04185346.1| Transcriptional regulatory protein srrA [Bacillus cereus AH1271] gi|229090537|ref|ZP_04221773.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock3-42] gi|229121118|ref|ZP_04250355.1| Transcriptional regulatory protein srrA [Bacillus cereus 95/8201] gi|229172214|ref|ZP_04299778.1| Transcriptional regulatory protein srrA [Bacillus cereus MM3] gi|229183771|ref|ZP_04310988.1| Transcriptional regulatory protein srrA [Bacillus cereus BGSC 6E1] gi|229195776|ref|ZP_04322536.1| Transcriptional regulatory protein srrA [Bacillus cereus m1293] gi|301053115|ref|YP_003791326.1| response regulator [Bacillus anthracis CI] gi|30255426|gb|AAP25435.1| DNA-binding response regulator ResD [Bacillus anthracis str. Ames] gi|47501919|gb|AAT30595.1| DNA-binding response regulator ResD [Bacillus anthracis str. 'Ames Ancestor'] gi|47554220|gb|EAL12583.1| transcriptional regulatory protein resD [Bacillus cereus G9241] gi|49178330|gb|AAT53706.1| DNA-binding response regulator ResD [Bacillus anthracis str. Sterne] gi|49328804|gb|AAT59450.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51977340|gb|AAU18890.1| response regulator [Bacillus cereus E33L] gi|164711587|gb|EDR17134.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0488] gi|167510409|gb|EDR85809.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0193] gi|167530349|gb|EDR93075.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0442] gi|170128919|gb|EDS97785.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0389] gi|172082877|gb|EDT67940.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0174] gi|190560796|gb|EDV14771.1| DNA-binding response regulator ResD [Bacillus anthracis Tsiankovskii-I] gi|196030120|gb|EDX68720.1| DNA-binding response regulator ResD [Bacillus cereus NVH0597-99] gi|206743520|gb|EDZ54949.1| DNA-binding response regulator ResD [Bacillus cereus H3081.97] gi|221239264|gb|ACM11974.1| response regulator [Bacillus cereus Q1] gi|225787803|gb|ACO28020.1| DNA-binding response regulator ResD [Bacillus cereus 03BB102] gi|227004496|gb|ACP14239.1| DNA-binding response regulator ResD [Bacillus anthracis str. CDC 684] gi|228587673|gb|EEK45731.1| Transcriptional regulatory protein srrA [Bacillus cereus m1293] gi|228599620|gb|EEK57223.1| Transcriptional regulatory protein srrA [Bacillus cereus BGSC 6E1] gi|228611202|gb|EEK68460.1| Transcriptional regulatory protein srrA [Bacillus cereus MM3] gi|228662237|gb|EEL17840.1| Transcriptional regulatory protein srrA [Bacillus cereus 95/8201] gi|228692804|gb|EEL46527.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock3-42] gi|228732068|gb|EEL82959.1| Transcriptional regulatory protein srrA [Bacillus cereus AH1271] gi|228775049|gb|EEM23442.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228814411|gb|EEM60676.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228826783|gb|EEM72550.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228832983|gb|EEM78551.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228845483|gb|EEM90516.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|300375284|gb|ADK04188.1| response regulator [Bacillus cereus biovar anthracis str. CI] Length = 238 Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 35/232 (15%), Positives = 91/232 (39%), Gaps = 14/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ + ++E ++ + + D+ ++ G+ + Sbjct: 7 ILIVDDEDRIRRLLKMYLEREQYTIEEADNGDTALEMALQNDYDLILLDLM--MPGKDGI 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV--------- 112 E+ + +R P+I ++ + F+ G DD + KP RE++ RV Sbjct: 65 EVCKGVREKKATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRRSVP 124 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + + + + + +D G L +E +L +L K + Q Sbjct: 125 TTFFTQDTTTKDVTVFPHLTIDNDAHRVTADGNEVNLTPKEYELLLFLAKAPDKVFDREQ 184 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL--RNKLGFDPVDSKRFLGYSIDW 222 + ++ ++ + V++H+ +LR+KL ++ + + +GY + Sbjct: 185 LLKEVW-QYEFFGDLRTVDTHVKRLREKLSKKSPDAAKMIVTVWGVGYKFEV 235 >gi|302519214|ref|ZP_07271556.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. SPB78] gi|302428109|gb|EFK99924.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. SPB78] Length = 290 Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 46/221 (20%), Positives = 89/221 (40%), Gaps = 7/221 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD V + G +++ + R D+ ++ L G LE Sbjct: 20 LVVDDDPTVAEVVAGYLLRAGCTVDRAGDGPSALARAHTHRPDLVVLDLML--PGMDGLE 77 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +RA VP+I ++ + + G DD V KP RE++ RV ++ RR + Sbjct: 78 VCRRMRARHPVPVIMLTARGDEDDRILGLERGADDYVTKPFSPRELVLRVESVLRRTRPD 137 Query: 123 NNRAETGPIR--VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 R + R G L RE +L + + + G+ ++ ++ ++G Sbjct: 138 PAPDPVRLGRLALDPAARLATRDGTPLSLTLREFDLLAFFLRHPGRAYSREELMREVWGW 197 Query: 181 FDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 E + + V HI +LR K+ + + + +GY Sbjct: 198 --EFGDLSTVTVHIRRLRAKIEDDPAAPRAIRTVWGVGYRF 236 >gi|315644229|ref|ZP_07897399.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] gi|315280604|gb|EFU43893.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] Length = 225 Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 41/221 (18%), Positives = 95/221 (42%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD A +++ +G ++ + + + ++ ++ Sbjct: 4 ILIADDDAHIRELLQYHLQSEGYTVFTAADGKEASARLAEEQIHLAVVDVM--MPNMDGY 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 +L IR + P+I ++ L F G DD + KP +E+L R+ A+ RR ++ Sbjct: 62 QLCEEIRRYYDFPVILLTAKDQLVDKEKGFAVGTDDYLTKPFEPKELLFRIKALLRRYQM 121 Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 N + + + G++ LP +E +L L + + ++ ++ I+G Sbjct: 122 VNADKIHLNETTIDRKSYEVQGHGKMLMLPMKEFELLSQLASYPDRTFSREELIQLIWGT 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D ++ V+ HI +LR++ ++ G + + R +GY ++ Sbjct: 182 -DFEGDDRTVDVHIKRLRERFADRSGDFQIRTIRGVGYKLE 221 >gi|325661912|ref|ZP_08150532.1| hypothetical protein HMPREF0490_01270 [Lachnospiraceae bacterium 4_1_37FAA] gi|331085778|ref|ZP_08334861.1| hypothetical protein HMPREF0987_01164 [Lachnospiraceae bacterium 9_1_43BFAA] gi|325471764|gb|EGC74982.1| hypothetical protein HMPREF0490_01270 [Lachnospiraceae bacterium 4_1_37FAA] gi|330406701|gb|EGG86206.1| hypothetical protein HMPREF0987_01164 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 228 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 51/225 (22%), Positives = 96/225 (42%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD L+ G DG+ + E L S D+ ++ L Sbjct: 5 ILVVDDEKLIVKGIRFSLEQDGMEVTAAYDGEEALALAKSGEFDLILLDVML--PKLTGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + +R S VP+I ++ + + G DD V KP + E+ AR+ AI RR K Sbjct: 63 EVCQQVREFSDVPIIMLTAKGDDIDKIMGLEYGADDYVTKPFNILEVKARIKAIIRRTKK 122 Query: 122 SNNRAETG-----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + +++ + R + L +E +LE L N+ K ++ ++ + Sbjct: 123 DRPEEQKNLIVKGEMKLDCESRRVFIGEREVNLTAKEFDMLELLALNQNKVYSREKLLNL 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++G +D + V+ HI +LR+K+ + V +K +GY Sbjct: 183 VWG-YDYPGDARTVDVHIRRLREKIESHPSDPKYVHTKWGVGYYF 226 >gi|153940311|ref|YP_001391825.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|152936207|gb|ABS41705.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|295319851|gb|ADG00229.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum F str. 230613] Length = 232 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 44/227 (19%), Positives = 90/227 (39%), Gaps = 10/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + ++G + + + + D+ ++ L G Sbjct: 6 ILIVDDEEHICELIKFNLENNGYNCICALNGIEALNIAKEEKPDLILLDLML--PGMDGY 63 Query: 62 ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPI---HHREILARVAAI 115 E+ + IR + + P+I I+ + + G DD + KP + V Sbjct: 64 EVCKEIRKDNNIATTPIIMITAKGEELDKVLGLELGADDYITKPFSVREMVARVKAVLRR 123 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + + G I V + GE L +E +LE L+ N+GK + + + Sbjct: 124 RTTINIESKSYILGNIVVDFEKHSLTKAGEKIELTLKEFELLEVLIKNKGKVMTRDFLLD 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 I+G ++ E V+ HI LRKK+ + +++ R +GY + Sbjct: 184 RIWG-YEYIGETRTVDVHIRHLRKKIEDDDKNPKFIETIRGIGYRFN 229 >gi|300313896|ref|YP_003777988.1| two component transcription response regulator protein [Herbaspirillum seropedicae SmR1] gi|300076681|gb|ADJ66080.1| two component transcription response regulator protein [Herbaspirillum seropedicae SmR1] Length = 244 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 40/226 (17%), Positives = 84/226 (37%), Gaps = 9/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G S + + R D+ ++ L G Sbjct: 18 ILIVEDEPKLAELLQKYLALAGYSARHVARGDAALDAVRAQRPDLILLDIML--PGMDGW 75 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R S VP++ ++ + L + G DD + K + R Sbjct: 76 EICRQLRTFSDVPVLMLTARAEEEDRLRGLELGADDYIGKTPFSPREIVARVKSMLRRNA 135 Query: 122 SNNRAETGPI-----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + V+GE L E R+L+ + G+ ++ Q+ + Sbjct: 136 LVQQRTAQAPARSLLHIDDVRHQASVRGEALNLTPLELRLLKTFASAPGQVFSREQLLNH 195 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221 ++ D +V + V++HI LR+KL G + + + +GY + Sbjct: 196 LHD-DDRSVTDRAVDTHIKNLRRKLEPCFPGHNAIQAVYGVGYCFE 240 >gi|255658266|ref|ZP_05403675.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Mitsuokella multacida DSM 20544] gi|260849578|gb|EEX69585.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Mitsuokella multacida DSM 20544] Length = 235 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 48/233 (20%), Positives = 92/233 (39%), Gaps = 19/233 (8%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A +++ G +E LQ + D+ ++ L L Sbjct: 3 ILVVDDEAPIRELLSFNLKKSGYEVEMAADGRTA--LQRAPEADLVLLDIML--PEVDGL 58 Query: 62 ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EI 108 E+ R ++A Q +P+I ++ + + G DD V KP R Sbjct: 59 EVCRQLKADPQTSGIPIIMLTAKAEEIDRVLGLELGADDYVVKPFSMRELLARVKAVLRR 118 Query: 109 LARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 A V R K G +R+ + + L +E +L+ L+ N G+ Sbjct: 119 SASVQKGSRENKEREESLTIGGLRLDFSSYQAWLHDKTIALTPKEYELLKLLVTNPGRAF 178 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 ++ ++ I+G ++ + V+ HI LR KL++ D +++ R +GY Sbjct: 179 SRDELLERIWG-YEYYGDTRTVDVHIRHLRAKLKDDPTVSDAIETVRGVGYRF 230 >gi|308069543|ref|YP_003871148.1| transcriptional regulatory protein resD [Paenibacillus polymyxa E681] gi|305858822|gb|ADM70610.1| Transcriptional regulatory protein resD [Paenibacillus polymyxa E681] Length = 238 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 39/232 (16%), Positives = 89/232 (38%), Gaps = 14/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ +G ++ E +++ + ++ L G + Sbjct: 8 ILIVDDEERIRRLLRMYLEKEGYVIDEAEDGEIALQKATASDYSIILLDVML--PGMDGI 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR---------V 112 E+ +R P+I ++ + F+ G DD V KP RE++ R Sbjct: 66 EVCTRLRQTKATPVIMLTAKGEEVNRVQGFEVGADDYVVKPFSPREVIYRVKAILRRSSE 125 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 A + V +N + + D G L +E +L YL + K ++ + Sbjct: 126 TAFLTKEAVPSNSIVFPNLIIEHDAHRVTAGGIEISLTPKEYELLHYLAVSPDKVFSREE 185 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN--KLGFDPVDSKRFLGYSIDW 222 + ++ ++ + V++H+ +LR+KL + + +GY ++ Sbjct: 186 LLKDVW-NYEFFGDLRTVDTHVKRLREKLNKVSPEAAAMITTVWGVGYKLEV 236 >gi|30019625|ref|NP_831256.1| transcriptional regulatory protein resD [Bacillus cereus ATCC 14579] gi|206967773|ref|ZP_03228729.1| DNA-binding response regulator ResD [Bacillus cereus AH1134] gi|218234890|ref|YP_002366257.1| DNA-binding response regulator ResD [Bacillus cereus B4264] gi|218896505|ref|YP_002444916.1| DNA-binding response regulator ResD [Bacillus cereus G9842] gi|228900155|ref|ZP_04064388.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis IBL 4222] gi|228907207|ref|ZP_04071068.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis IBL 200] gi|228920285|ref|ZP_04083633.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228938687|ref|ZP_04101292.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228951952|ref|ZP_04114050.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228957851|ref|ZP_04119591.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis serovar pakistani str. T13001] gi|228964548|ref|ZP_04125658.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis serovar sotto str. T04001] gi|228971569|ref|ZP_04132193.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978180|ref|ZP_04138558.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis Bt407] gi|229016833|ref|ZP_04173761.1| Transcriptional regulatory protein srrA [Bacillus cereus AH1273] gi|229023038|ref|ZP_04179553.1| Transcriptional regulatory protein srrA [Bacillus cereus AH1272] gi|229043317|ref|ZP_04191037.1| Transcriptional regulatory protein srrA [Bacillus cereus AH676] gi|229069128|ref|ZP_04202420.1| Transcriptional regulatory protein srrA [Bacillus cereus F65185] gi|229078758|ref|ZP_04211312.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock4-2] gi|229109030|ref|ZP_04238631.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock1-15] gi|229126890|ref|ZP_04255902.1| Transcriptional regulatory protein srrA [Bacillus cereus BDRD-Cer4] gi|229144175|ref|ZP_04272589.1| Transcriptional regulatory protein srrA [Bacillus cereus BDRD-ST24] gi|229149774|ref|ZP_04278004.1| Transcriptional regulatory protein srrA [Bacillus cereus m1550] gi|229177983|ref|ZP_04305355.1| Transcriptional regulatory protein srrA [Bacillus cereus 172560W] gi|296502146|ref|YP_003663846.1| transcriptional regulatory protein [Bacillus thuringiensis BMB171] gi|29895169|gb|AAP08457.1| Transcriptional regulatory protein resD [Bacillus cereus ATCC 14579] gi|89212828|gb|ABD63914.1| transcriptional regulatory protein ResD [Bacillus cereus] gi|206736693|gb|EDZ53840.1| DNA-binding response regulator ResD [Bacillus cereus AH1134] gi|218162847|gb|ACK62839.1| DNA-binding response regulator ResD [Bacillus cereus B4264] gi|218544434|gb|ACK96828.1| DNA-binding response regulator ResD [Bacillus cereus G9842] gi|228605471|gb|EEK62920.1| Transcriptional regulatory protein srrA [Bacillus cereus 172560W] gi|228633805|gb|EEK90404.1| Transcriptional regulatory protein srrA [Bacillus cereus m1550] gi|228639183|gb|EEK95599.1| Transcriptional regulatory protein srrA [Bacillus cereus BDRD-ST24] gi|228656830|gb|EEL12656.1| Transcriptional regulatory protein srrA [Bacillus cereus BDRD-Cer4] gi|228674499|gb|EEL29742.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock1-15] gi|228704631|gb|EEL57063.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock4-2] gi|228714073|gb|EEL65956.1| Transcriptional regulatory protein srrA [Bacillus cereus F65185] gi|228726031|gb|EEL77268.1| Transcriptional regulatory protein srrA [Bacillus cereus AH676] gi|228738261|gb|EEL88742.1| Transcriptional regulatory protein srrA [Bacillus cereus AH1272] gi|228744394|gb|EEL94468.1| Transcriptional regulatory protein srrA [Bacillus cereus AH1273] gi|228781652|gb|EEM29852.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis Bt407] gi|228788228|gb|EEM36183.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228795148|gb|EEM42644.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis serovar sotto str. T04001] gi|228801767|gb|EEM48644.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis serovar pakistani str. T13001] gi|228807875|gb|EEM54396.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228821063|gb|EEM67083.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228839484|gb|EEM84777.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228852428|gb|EEM97221.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis IBL 200] gi|228859561|gb|EEN03988.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis IBL 4222] gi|296323198|gb|ADH06126.1| transcriptional regulatory protein [Bacillus thuringiensis BMB171] gi|326939195|gb|AEA15091.1| transcriptional regulatory protein resD [Bacillus thuringiensis serovar chinensis CT-43] Length = 238 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 35/232 (15%), Positives = 91/232 (39%), Gaps = 14/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ + ++E ++ + + D+ ++ G+ + Sbjct: 7 ILIVDDEDRIRRLLKMYLEREQYTIEEADNGDTALEMALQNDYDLILLDLM--MPGKDGI 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV--------- 112 E+ + +R P+I ++ + F+ G DD + KP RE++ RV Sbjct: 65 EVCKGVREKKATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRRAVP 124 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + + + + + +D G L +E +L +L K + Q Sbjct: 125 TTFFTQDTTTKDVTVFPHLTIDNDAHRVTADGNEVNLTPKEYELLLFLAKAPDKVFDREQ 184 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL--RNKLGFDPVDSKRFLGYSIDW 222 + ++ ++ + V++H+ +LR+KL ++ + + +GY + Sbjct: 185 LLKEVW-QYEFFGDLRTVDTHVKRLREKLSKKSPDAAKMIVTVWGVGYKFEV 235 >gi|227541888|ref|ZP_03971937.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866] gi|227182331|gb|EEI63303.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866] Length = 226 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 42/220 (19%), Positives = 84/220 (38%), Gaps = 5/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + +G + D+ ++ L G + Sbjct: 5 ILVVDDDPAISEMLSIVLEAEGFDTVVVTDGAEAVATFEREQPDLILLDLML--PGMNGI 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + IR S VP++ ++ + +SG DD V KP +E++ARV A RR Sbjct: 63 DICKTIRRSSPVPIVMLTAKTDTIDIVLGLESGADDYVTKPFKPKELVARVRARLRRSSS 122 Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 +N + E L E +L L G+ + ++ ++G Sbjct: 123 DDNEIMQISNLTIDVPSHTVRRGNEELQLTPLEFDLLVELGRKPGQVFTREELLEKVWG- 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVD-SKRFLGYS 219 + A + +V H+ +LR K+ + + R +GY Sbjct: 182 YKHASDTRLVNVHVQRLRSKIETDPENPTIVLTVRGVGYK 221 >gi|251794820|ref|YP_003009551.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247542446|gb|ACS99464.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 224 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 44/223 (19%), Positives = 94/223 (42%), Gaps = 6/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ +G + + E + + D++ I+ Sbjct: 4 ILVVDDDPNIRELVSLFLRREGYEVIEATNGEDALNRLEAVKPDLAVIDVM--MPKMDGW 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L +R +PL+ ++ + F+ G DD V KP E++ RV A+ +R ++ Sbjct: 62 ALCSALRESFDMPLLMLTAKGETAHKVKGFELGADDYVVKPFDPPELIVRVKALLKRYRI 121 Query: 122 SNNRAETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 ++++ + GE LP +E +L L + GK + + ++G+ Sbjct: 122 ASSQVVELGGLSMNRSDFQLVANGEKILLPPKEFELLFKLASYPGKTFTREHLIEQLWGM 181 Query: 181 FDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDW 222 + +E V+ HI +LR++ GF + + R LGY ++ Sbjct: 182 -NYEGDERTVDVHIKRLRERFPEEDFGFR-IVTIRGLGYRLEE 222 >gi|170756077|ref|YP_001782072.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum B1 str. Okra] gi|169121289|gb|ACA45125.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum B1 str. Okra] Length = 232 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 44/227 (19%), Positives = 90/227 (39%), Gaps = 10/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + ++G + + + + D+ ++ L G Sbjct: 6 ILIVDDEEHICELIKFNLENNGYNCICALNGIEALNIAKEEKPDLILLDLML--PGMDGY 63 Query: 62 ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPI---HHREILARVAAI 115 E+ + IR + + P+I I+ + + G DD + KP + V Sbjct: 64 EVCKEIRKDNNIATTPIIMITAKGEELDKVLGLELGADDYITKPFSVREMIARVKAVLRR 123 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + + G I V + GE L +E +LE L+ N+GK + + + Sbjct: 124 RTTINIESKSYILGNIVVDFEKHSLTKAGEKIELTLKEFELLEVLIKNKGKVMTRDFLLD 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 I+G ++ E V+ HI LRKK+ + +++ R +GY + Sbjct: 184 RIWG-YEYIGETRTVDVHIRHLRKKIEDDDKNPKFIETIRGIGYRFN 229 >gi|157692813|ref|YP_001487275.1| response regulator [Bacillus pumilus SAFR-032] gi|157681571|gb|ABV62715.1| response regulator [Bacillus pumilus SAFR-032] Length = 240 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 33/232 (14%), Positives = 83/232 (35%), Gaps = 14/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++ + ++ + + + D+ ++ G + Sbjct: 9 ILVVDDEARIRRLLKMYLERENYEIDEAENGDEAIQKGLQSDYDLILLDLM--MPGTDGI 66 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112 E+ IR P+I ++ + F++G DD + KP RE + Sbjct: 67 EVCNQIRDKKATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRSSQ 126 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + + + + D G+ L +E +L +L K + + Sbjct: 127 TSYLNTGTTTKDVLVFSHLSIDHDAHRVTADGKEVSLTPKEYELLYFLAKTPDKVYDREK 186 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN--KLGFDPVDSKRFLGYSIDW 222 + ++ ++ + V++H+ +LR+KL + + +GY + Sbjct: 187 LLKEVW-QYEFFGDLRTVDTHVKRLREKLNKVSPEAAKKIVTVWGVGYKFEV 237 >gi|326201972|ref|ZP_08191842.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] gi|325987767|gb|EGD48593.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] Length = 228 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 40/223 (17%), Positives = 86/223 (38%), Gaps = 6/223 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + +G + + + ++ L G + Sbjct: 8 LIVDDDRNICELIGLYLEKEGYEVLYAYNGLNAVDTFKIQTPSLVVLDIML--PGIDGWQ 65 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR S +P+I ++ + + G DD + KP +E++ARV A+ RR + Sbjct: 66 VCREIRKVSSIPIIMLTAKGETFDKVLGLELGADDYMVKPFEPKELVARVKAVLRRYEHK 125 Query: 123 NNRAETGPIRVFSDGRDPEVQG---EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + LP +E +L +L +N K + Q+ ++G Sbjct: 126 EVDTLEVAFPNLIINKSNYTIRLKGNLIELPPKELELLFFLASNPNKVFTREQLLEHVWG 185 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 FD + V+ H+ ++R+K+ + + +GY + Sbjct: 186 -FDFYGDSRTVDVHVKRVREKIDLDGQPWQLKTVWGVGYKFEV 227 >gi|194016744|ref|ZP_03055357.1| transcriptional regulatory protein ResD [Bacillus pumilus ATCC 7061] gi|194011350|gb|EDW20919.1| transcriptional regulatory protein ResD [Bacillus pumilus ATCC 7061] Length = 240 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 33/232 (14%), Positives = 82/232 (35%), Gaps = 14/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++ + ++ + + D+ ++ G + Sbjct: 9 ILVVDDEARIRRLLKMYLERENYEIDEAENGDEAIQKGLQTDYDLILLDLM--MPGTDGI 66 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112 E+ IR P+I ++ + F++G DD + KP RE + Sbjct: 67 EVCNQIRDKKATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRSSQ 126 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + + + + D G+ L +E +L +L K + + Sbjct: 127 TSYLNTGTTTKDVLVFSHLSIDHDAHRVTADGKEVSLTPKEYELLYFLAKTPDKVYDREK 186 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN--KLGFDPVDSKRFLGYSIDW 222 + ++ ++ + V++H+ +LR+KL + + +GY + Sbjct: 187 LLKEVW-QYEFFGDLRTVDTHVKRLREKLNKVSPEAAKKIVTVWGVGYKFEV 237 >gi|116074401|ref|ZP_01471663.1| two-component response regulator [Synechococcus sp. RS9916] gi|116069706|gb|EAU75458.1| two-component response regulator [Synechococcus sp. RS9916] Length = 280 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 53/231 (22%), Positives = 97/231 (41%), Gaps = 16/231 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V+ + G + E + S D+ ++ L Sbjct: 37 ILVVDDEPAVRRVLVMRLQLAGYRVICAEDGEQALEVFHSESPDLVVLDVML--PKMDGF 94 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R +RA S VP+I +S ++ + D G DD + KP +E+ AR+A+I RR+ Sbjct: 95 AVCRRLRAESCVPIIFLSALEAISERVAGLDLGADDYLPKPFSPKELEARIASILRRVGR 154 Query: 122 SNNRAETGPIR------------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 + AE I V ++ R + L E +LE L G+ V Sbjct: 155 GSATAEPREIPVGQGVLRVGDLVVDTNRRQVTRGTDRISLTYTEFSLLELLFREPGRVVP 214 Query: 170 KTQIFSAIYG-LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218 + +I ++G A + VV+ ++++LR KL + + + + R +GY Sbjct: 215 RAEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 265 >gi|108805768|ref|YP_645705.1| two component transcriptional regulator [Rubrobacter xylanophilus DSM 9941] gi|108767011|gb|ABG05893.1| two component transcriptional regulator, winged helix family [Rubrobacter xylanophilus DSM 9941] Length = 228 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 53/224 (23%), Positives = 93/224 (41%), Gaps = 9/224 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L+DD ++ +G ++ E ++ + ++ L Sbjct: 8 ILLVDDEPSLQKMLTHALEREGFQVQAVGDGEAALEAFNTFEPHLIILDIML--PKLDGT 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IRA S VP++ ++ + + G DD V KP RE++ARV AI RR +V Sbjct: 66 EVCRRIRAQSDVPILMLTAKDDEIDRVVGLELGADDYVTKPFAVRELVARVRAIMRRAQV 125 Query: 122 SNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + R V G L E +L L +N GK +++ + + Sbjct: 126 PAGQRPDELNYDGLKINLPSRRVSVDGREVDLTYTEFELLVTLASNPGKVFSRSALLRRV 185 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 +G DE +E V+ HI LR+K+ + + + + R +GY Sbjct: 186 WG--DEFRDERTVDVHIRHLREKIERDPRNPEFIHTARGVGYVF 227 >gi|320162273|ref|YP_004175498.1| OmpR family two-component response regulator [Anaerolinea thermophila UNI-1] gi|319996127|dbj|BAJ64898.1| OmpR family two-component response regulator [Anaerolinea thermophila UNI-1] Length = 225 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 50/220 (22%), Positives = 96/220 (43%), Gaps = 4/220 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + +G +E E L R D+ ++ L G L Sbjct: 5 ILIIEDDEGIVRVLKRALTYEGYLVESALEGETGLQLAREHRPDLIILDWML--PGMDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + +R P++ ++ +LQ + D+G DD + KP E+LAR+ A+ RR ++ Sbjct: 63 EVCQRLRTLCNAPILMLTAKDTLQDRVQGLDAGADDYMTKPFELEELLARIRALLRRTQM 122 Query: 122 SNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + R PL +E +LE + + + + + IF ++G Sbjct: 123 ERAPVLSFADLTLDTSTRQATRGNRTIPLTAKEYDLLELFLRHPRQVLTREMIFDRVWG- 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D E NV++ +I LR+KL + + + R +GY + Sbjct: 182 YDFGGESNVLDVYIRYLRQKLESDGEPRLLHTVRGVGYVL 221 >gi|229160526|ref|ZP_04288521.1| Transcriptional regulatory protein srrA [Bacillus cereus R309803] gi|228622936|gb|EEK79767.1| Transcriptional regulatory protein srrA [Bacillus cereus R309803] Length = 238 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 34/232 (14%), Positives = 91/232 (39%), Gaps = 14/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ + +++ ++ + + D+ ++ G+ + Sbjct: 7 ILIVDDEDRIRRLLKMYLEREQYTIDEADNGDTALEMALQNDYDLILLDLM--MPGKDGI 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV--------- 112 E+ + +R P+I ++ + F+ G DD + KP RE++ RV Sbjct: 65 EVCKGVREKKATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRRSVP 124 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + + + + + +D G L +E +L +L K + Q Sbjct: 125 TTFFTQDTTTKDVTVFPHLTIDNDAHRVTADGNEVNLTPKEYELLLFLAKAPDKVFDREQ 184 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL--RNKLGFDPVDSKRFLGYSIDW 222 + ++ ++ + V++H+ +LR+KL ++ + + +GY + Sbjct: 185 LLKEVW-QYEFFGDLRTVDTHVKRLREKLSKKSPDAAKMIVTVWGVGYKFEV 235 >gi|323705241|ref|ZP_08116816.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium xylanolyticum LX-11] gi|323535143|gb|EGB24919.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium xylanolyticum LX-11] Length = 229 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 44/229 (19%), Positives = 90/229 (39%), Gaps = 10/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 + IDD + D A +G ++ + + D+ ++ L G Sbjct: 3 ILAIDDEEKILDVIKAYLEKEGYTVLTETNGANALNTFKTVNPDLVILDLML--PGMSGE 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116 E+ R IRA S+VP++ ++ S + F G DD + KP RE+ R Sbjct: 61 EICRKIRALSKVPILMLTAKVSEDDKVYGFTIGADDYLTKPFSPRELTMRVKAILRRTKN 120 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 G + + + + + +G + L E ++L ++ N K ++++ Sbjct: 121 DLPLNDIFMFNDGDLVIDTRSYEVKKKGRIVNLTPNEYKLLTVMVQNPNKVFTRSELIEK 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI-DWN 223 +G +D + +++HI LR+K+ + + + GY + N Sbjct: 181 AFG-YDFDGFDRTIDAHIKNLRQKIEDDPKNPTYIKTVYGAGYKFGEEN 228 >gi|312126307|ref|YP_003991181.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor hydrothermalis 108] gi|311776326|gb|ADQ05812.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor hydrothermalis 108] Length = 230 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 45/227 (19%), Positives = 97/227 (42%), Gaps = 8/227 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + E S D+ ++ L Sbjct: 6 ILVVDDEKPIVDIIKFNLEKEGYKVTASYDGEDALNRIKSENFDMVLLDVML--PKIDGF 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + +R S VP+I I+ + + G DD + KP RE++AR+ A RR Sbjct: 64 SVCKKVREFSDVPIIMITAKADEVDKVLGLELGADDYITKPFGIRELIARIRANLRRTAQ 123 Query: 122 SNNRAETGPI----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 S+ + + + + + G+V L RE +L++LM+ +G+ ++ ++ + Sbjct: 124 SSTQDGKVLKAGALTLNPETFEVKKNGKVIELTVREYELLKFLMSQKGQVFSREELLEKV 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223 + ++ + V+ + +LR+K+ + + +KR +GY + N Sbjct: 184 WD-YEYYGDVRTVDVTVRRLREKIEDNPSEPTFILTKRGIGYYFNPN 229 >gi|229102179|ref|ZP_04232889.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock3-28] gi|228681249|gb|EEL35416.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock3-28] Length = 238 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 35/232 (15%), Positives = 91/232 (39%), Gaps = 14/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ + ++E ++ + + D+ ++ G+ + Sbjct: 7 ILIVDDEDRIRRLLKMYLEREQYTIEEADNGDTALEMALQNDYDLILLDLM--MPGKDGI 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV--------- 112 E+ + +R P+I ++ + F+ G DD + KP RE++ RV Sbjct: 65 EVCKGVREKKATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRRAVP 124 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + + + + + +D G L +E +L +L K + Q Sbjct: 125 TTFFTQDTTTKDVTVFPHLTIDNDAHRVTADGNEVNLTPKEYELLLFLAKAPDKVFDREQ 184 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL--RNKLGFDPVDSKRFLGYSIDW 222 + ++ ++ + V++H+ +LR+KL ++ + + +GY + Sbjct: 185 LLKEVW-QYEFFGDLRTVDTHVKRLREKLSKKSPDAAKMIVTVWGVGYKFEV 235 >gi|168180586|ref|ZP_02615250.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|226949883|ref|YP_002804974.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] gi|182668498|gb|EDT80477.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|226840760|gb|ACO83426.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] Length = 232 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 44/227 (19%), Positives = 90/227 (39%), Gaps = 10/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + ++G + + + + D+ ++ L G Sbjct: 6 ILIVDDEEHICELIKFNLENNGYNCICALNGIEALNIAKEEKPDLILLDLML--PGMDGY 63 Query: 62 ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPI---HHREILARVAAI 115 E+ + IR + + P+I I+ + + G DD + KP + V Sbjct: 64 EVCKEIRKDNNIATTPIIMITAKGEELDKVLGLELGADDYITKPFSVREMVARVKAVLRR 123 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + + G I V + GE L +E +LE L+ N+GK + + + Sbjct: 124 RTTINIESKSYILGNIVVDFEKHSLTKAGEKIELTLKEFELLEVLIKNKGKVMTRDFLLD 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 I+G ++ E V+ HI LRKK+ + +++ R +GY + Sbjct: 184 RIWG-YEYIGETRTVDVHIRHLRKKIEDDDKNPKFIETIRGIGYRFN 229 >gi|220930753|ref|YP_002507662.1| transcriptional regulator [Clostridium cellulolyticum H10] gi|220001081|gb|ACL77682.1| two component transcriptional regulator, winged helix family [Clostridium cellulolyticum H10] Length = 230 Score = 160 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 40/228 (17%), Positives = 91/228 (39%), Gaps = 10/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G E L S D+ ++ L Sbjct: 5 ILIVDDEKNIVDILKFNLKKEGYDTIEAYDGEEAVNLALSQSPDLILLDIML--PKMDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILA------RVAAI 115 + R +R P++ ++ + + G DD + KP RE++A R Sbjct: 63 TVCRKLRQSISTPILMLTAKEEEVDKVLGLELGADDYITKPFSPRELMARVKANLRRMIP 122 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + +N+ + G + + +D + + E L RE ++++L A +G ++ + Sbjct: 123 GEQPVSNNSVNQYGDLTIDTDRYEVKRGEETIELTLREFELVKFLAAQQGTIFSRETLLE 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 ++G ++ + V+ + ++R+KL + + +KR +GY + Sbjct: 183 KVWG-YEYYGDVRTVDVTVRRVREKLEKDPANPQYIVTKRGVGYYFNK 229 >gi|225574100|ref|ZP_03782711.1| hypothetical protein RUMHYD_02165 [Blautia hydrogenotrophica DSM 10507] gi|225038700|gb|EEG48946.1| hypothetical protein RUMHYD_02165 [Blautia hydrogenotrophica DSM 10507] Length = 242 Score = 160 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 90/228 (39%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + N E R D+ ++ L G Sbjct: 17 ILIVDDDNNIAELIALYLTKECYDTCIVNDGEQALREFEHFRPDLILLDLML--PGMDGY 74 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R IR S VP+I +S + + G DD + KP +E++ARV A+ RR V Sbjct: 75 QVCREIRHTSDVPIIMLSAKGETFDKVLGLELGADDYIIKPFDSKELVARVKAVLRRFHV 134 Query: 122 SNN-------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + E +P +E +L +L ++ + + Q+ Sbjct: 135 KQPAAAPDEKCVSYPDLTINLTNYSVIYMNERVDMPPKELELLYFLASSPNQVFTREQLL 194 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 I+G ++ + V+ HI +LR+K+++ + + +GY + Sbjct: 195 DHIWG-YEYIGDTRTVDVHIKRLREKIKDH-DKWSIATVWGIGYKFEV 240 >gi|313887650|ref|ZP_07821332.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Peptoniphilus harei ACS-146-V-Sch2b] gi|312846259|gb|EFR33638.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Peptoniphilus harei ACS-146-V-Sch2b] Length = 233 Score = 160 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 50/225 (22%), Positives = 98/225 (43%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + D F +G +E + + L D+ ++ Sbjct: 5 ILVVDDESAISDIIKFNFEKEGYLVETACNGKEAIALAKENNYDLILLDIM--MPKLNGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E R IR S VP+I ++ + + G DD V KP RE+LARV A+ RR Sbjct: 63 EALREIRKTSDVPVIMLTAREEEVDKVLGLELGADDYVVKPFSMRELLARVKAVLRRFDS 122 Query: 122 SNNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + + + + + EV L RE +L++L + G+ ++ ++ Sbjct: 123 PDKKDDSSILKVMDLEIDLNKYQVLRGDEVIELTLREFELLKFLASYPGRVFSREELLEE 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++ ++ + V+ + +LR+K+ + K GF + +KR +GY Sbjct: 183 VW-EYEYYGDIRTVDVTVRRLREKIEDEKKGFKYIKTKRGVGYFF 226 >gi|163746354|ref|ZP_02153712.1| phosphate regulon transcriptional regulatory protein PhoB [Oceanibulbus indolifex HEL-45] gi|161380239|gb|EDQ04650.1| phosphate regulon transcriptional regulatory protein PhoB [Oceanibulbus indolifex HEL-45] Length = 229 Score = 160 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 53/221 (23%), Positives = 98/221 (44%), Gaps = 4/221 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61 +L++D ++ +G + E L S A D+ ++ + G +V Sbjct: 9 LLVEDEPAQREVLAYNLEAEGFEVRRAEDGEEAMLLVSEAAPDLVILDWMMPLMSGIEVC 68 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + +P+I +S T+ ++G DD V KP + RE++ARV RR + Sbjct: 69 RQLKTRESTRHIPVIMLSARSEEVDTVRGLETGADDYVIKPYNLRELMARVRTQLRRTRP 128 Query: 122 SNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + A I++ + G L E R+L L+ G+ ++ Q+ ++G Sbjct: 129 AAAGALLSFDDIQLDPERHRVSRAGSELKLGPTEYRLLTTLLEKPGRVFSRDQLLDHVWG 188 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D V+ V+ HI++LRK L + G DP+ + R GY++ Sbjct: 189 R-DIYVDTRTVDVHIARLRKALTREGGGDPIRTVRGAGYAL 228 >gi|268316550|ref|YP_003290269.1| two component transcriptional regulator, winged helix family [Rhodothermus marinus DSM 4252] gi|262334084|gb|ACY47881.1| two component transcriptional regulator, winged helix family [Rhodothermus marinus DSM 4252] Length = 233 Score = 160 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 46/226 (20%), Positives = 88/226 (38%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++ +G ++E + E + D+ ++ L G L Sbjct: 5 ILIVEDDTPLRALLQERLAAEGYAVEAVATGEEALQALEARPPDLVVLDLML--PGMDGL 62 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAI 115 E+ R +RA H V ++ ++ S + + G DD V KP E++AR Sbjct: 63 EVCRRLRARHPAVYVLMLTARSSELDRVVGLEVGADDYVTKPFSLNELVARVRAGLRRLQ 122 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 R E +R+ R G+ L RE +L +L + + + Q+ Sbjct: 123 LDRETADEAPLEFDGLRIDPVRRQVWRDGQPVHLTVREFELLLFLARHPDRPFTRLQLLR 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++G+ D V+SHI +LR K+ + + +GY Sbjct: 183 EVWGI-DYPGYARTVDSHIQRLRAKIEPTPGAPRYIRTVWGVGYKF 227 >gi|226309917|ref|YP_002769811.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226092865|dbj|BAH41307.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 226 Score = 160 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 46/222 (20%), Positives = 94/222 (42%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD V++ +G ++ E L ++ ++ G+ Sbjct: 5 ILIADDDPHVRELLRFYLAKEGYNVLACVDGEEASQLLEQESVQLAIVDVM--MPGKNGW 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL R IR +P+I ++ ++ F +G DD + KP E+L R+ A+ RR ++ Sbjct: 63 ELCREIREFYDLPVILLTAKGEVRDKEKGFLAGTDDYLTKPFEPTELLYRIKALLRRYQM 122 Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + + +V+ E+ LP +E +L L + + + Q+ ++G Sbjct: 123 VSKQIIVLNDTVIDRISHVVKVKEELIHLPLKEFELLAQLASFPDRIFTRDQLLELVWG- 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 D + ++ HI +LR+K K + + R LGY ++ Sbjct: 182 GDTESDSRTIDVHIKRLREKFTEKTNDFVISTVRGLGYKLEV 223 >gi|153810970|ref|ZP_01963638.1| hypothetical protein RUMOBE_01361 [Ruminococcus obeum ATCC 29174] gi|149832858|gb|EDM87941.1| hypothetical protein RUMOBE_01361 [Ruminococcus obeum ATCC 29174] Length = 233 Score = 160 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 47/228 (20%), Positives = 93/228 (40%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + N E +S + D+ ++ L G Sbjct: 7 ILIVDDDNNIAELISLYLTKECFETRIVNDGEQALKDFASFQPDLILLDLML--PGIDGY 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R IR S VP+I +S + + G DD + KP +E++ARV A+ RR KV Sbjct: 65 QVCREIRHTSDVPIIMLSAKGETFDKVLGLELGADDYIIKPFDTKELVARVRAVLRRFKV 124 Query: 122 SNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + G+ +P +E +L +L A+ + + Q+ Sbjct: 125 RQPAGNPDEKCVSFPDLTINLTNYSVTYMGKQIDMPPKELELLYFLAASPNQVFTREQLL 184 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 I+G ++ + V+ HI +LR+K+++ + + +GY + Sbjct: 185 DHIWG-YEYIGDTRTVDVHIKRLREKIKDHPQWSL-STVWGIGYKFEV 230 >gi|291545359|emb|CBL18467.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus sp. SR1/5] Length = 233 Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 44/228 (19%), Positives = 89/228 (39%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + + N E D+ ++ L G Sbjct: 7 ILIVDDDNNIAELVALYLTKECFETKIVNDGEEALKQFHIFHPDLILLDLML--PGIDGY 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 ++ R IR S VP+I +S + + G DD + KP +E++ARV A+ RR Sbjct: 65 QVCREIRHTSDVPIIMLSAKGETFDKVLGLELGADDYIIKPFDSKELVARVRAVLRRFHV 124 Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + G +P +E +L +L A+ + + Q+ Sbjct: 125 KSPSAAPKEKCVSYPDLVINLTNYSVTYMGHQIDMPPKELELLYFLAASPNQVFTREQLL 184 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 I+G ++ + V+ HI +LR+K+++ + + +GY + Sbjct: 185 DHIWG-YEYIGDTRTVDVHIKRLREKIKDNPNWAL-STVWGIGYKFEV 230 >gi|229916170|ref|YP_002884816.1| two component transcriptional regulator, winged helix family [Exiguobacterium sp. AT1b] gi|229467599|gb|ACQ69371.1| two component transcriptional regulator, winged helix family [Exiguobacterium sp. AT1b] Length = 238 Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 38/231 (16%), Positives = 84/231 (36%), Gaps = 14/231 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ + +E + E L DV ++ + Sbjct: 7 ILVVDDEERIRRLLKMYLEREQYVIEEAVNGEEALALALENEYDVILLDLM--MPKMDGV 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112 E+ +R P+I ++ + F+ G DD + KP RE + Sbjct: 65 EVCTELRKTKATPVIMLTAKGEEIDRVQGFEVGADDYIVKPFSPREVVLRVKALLRRSGS 124 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + S + + + +D V GE L +E +L +L K ++ Q Sbjct: 125 TKFMHTSEKSKDLIVFPHLTIDNDAHRVTVDGEEIALTPKEYELLFFLAKQVDKVFSREQ 184 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSID 221 + ++ ++ + V++H+ +LR+KL + + + +GY + Sbjct: 185 LLKEVW-NYEFFGDLRTVDTHVKRLREKLNRVSPDAAHMITTVWGVGYKFE 234 >gi|153952801|ref|YP_001393566.1| sensory transduction protein [Clostridium kluyveri DSM 555] gi|219853466|ref|YP_002470588.1| hypothetical protein CKR_0123 [Clostridium kluyveri NBRC 12016] gi|146345682|gb|EDK32218.1| Predicted sensory transduction protein [Clostridium kluyveri DSM 555] gi|219567190|dbj|BAH05174.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 228 Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 37/224 (16%), Positives = 91/224 (40%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + G ++ N + E + D+ ++ L + Sbjct: 8 ILIVDDDENICEVIKMYVESAGYEVQVANDGKSAETTFLEYKPDLVILDIML--PNIDGI 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI---LARVAAIYRR 118 ++ + IR + P+I ++ + + G DD + KP +E+ + V Y Sbjct: 66 DVLKWIRKDYETPVIMLTAKGETFDKVLGLELGADDYIVKPFEPKEMLARIKAVLRRYSV 125 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + + + + + E +P +E +L YL N+ + + Q+ ++ Sbjct: 126 DNENKEVLKFEQLTIDINSYTVTYRNEDIKMPPKEFELLYYLANNKNRVFTREQLLCEVW 185 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 G +D + V+ H+ +LR+KL+ + +++ +GY + Sbjct: 186 G-YDYPGDSRTVDVHVKRLREKLQGGPNWQ-IETVWGVGYKFEV 227 >gi|125974818|ref|YP_001038728.1| two component transcriptional regulator [Clostridium thermocellum ATCC 27405] gi|256004925|ref|ZP_05429898.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 2360] gi|281418728|ref|ZP_06249747.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum JW20] gi|125715043|gb|ABN53535.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum ATCC 27405] gi|255991105|gb|EEU01214.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 2360] gi|281407812|gb|EFB38071.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum JW20] gi|316941938|gb|ADU75972.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 1313] Length = 232 Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 45/229 (19%), Positives = 92/229 (40%), Gaps = 11/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G S N E L S + D+ ++ L Sbjct: 5 ILVVDDEKNIVDILKFNLAKEGFSTLEANDGEQAIELALSEKPDLILLDIML--PKLDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R +R P+I I+ + + G DD + KP RE++ARV A RR+ Sbjct: 63 TVCRKLRESISTPIIMITAKEEEVDKVLGLELGADDYITKPFSTRELMARVKANLRRVAS 122 Query: 122 SNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 S + + + + EV L RE ++++L G+ ++ + Sbjct: 123 SAETQKKQSNYLKFGDLEIDIEHYEVRRNNEVIELTLREFELVKFLALQPGQIFSRETLL 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 ++G ++ + V+ + ++R+K+ + + +KR +GY + Sbjct: 183 EKVWG-YEYYGDVRTVDVTVRRVREKIEKDPSNPCYIMTKRGVGYYFNK 230 >gi|321312445|ref|YP_004204732.1| two-component response regulator [Bacillus subtilis BSn5] gi|320018719|gb|ADV93705.1| two-component response regulator [Bacillus subtilis BSn5] Length = 240 Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 47/234 (20%), Positives = 96/234 (41%), Gaps = 16/234 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + G + + E + + D+ ++ L + Sbjct: 5 ILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVML--PKLDGI 62 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ + +R P++ ++ + + G DD + KP RE+ ARV AI RR + Sbjct: 63 EVCKQLRQQKLMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRRSE 122 Query: 121 VSNNRAETGPIRV-----------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 ++ +E + D + + L +E +L YL ++G+ + Sbjct: 123 IAAPSSEMKNDEMEGQIVIGDLKILPDHYEAYFKESQLELTPKEFELLLYLGRHKGRVLT 182 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 + + SA++ +D A + +V+ HIS LR K+ N + + R LGY ++ Sbjct: 183 RDLLLSAVW-NYDFAGDTRIVDVHISHLRDKIENNTKKPVYIKTIRGLGYKLEE 235 >gi|134300813|ref|YP_001114309.1| two component transcriptional regulator [Desulfotomaculum reducens MI-1] gi|134053513|gb|ABO51484.1| two component transcriptional regulator, winged helix family [Desulfotomaculum reducens MI-1] Length = 229 Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 42/224 (18%), Positives = 95/224 (42%), Gaps = 7/224 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD ++ ++G +E E + D+ ++ + Sbjct: 7 LVVDDEDKIRQVIGIYLTNEGYYVEEALDGEEALRKFKAESWDLIVLDVM--MPKMDGIT 64 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYRR 118 + + IR S+VP+I ++ + + G DD + KP RE++AR+ + Sbjct: 65 VCQEIRKVSKVPIIMLTAKNDEVDRILGLEFGADDYMGKPFSPRELVARIKAVLRRVGTE 124 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 K + + + + R+ V+ + L +E +L L + G+ ++ Q+ ++ Sbjct: 125 EKKEGHLLKFPGMCMDLISREVLVKDKPITLTPKEFELLALLAKSTGRSYSREQLLEEVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 G FD + V++H+++LR KLR + + + +GY + Sbjct: 185 G-FDYYGDVRTVDTHVNRLRDKLRAAGAGNFIKTVWGVGYKFEV 227 >gi|300088282|ref|YP_003758804.1| winged helix family two component transcriptional regulator [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299528015|gb|ADJ26483.1| two component transcriptional regulator, winged helix family [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 229 Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 43/226 (19%), Positives = 88/226 (38%), Gaps = 10/226 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + + + E + + D+ ++ L E Sbjct: 6 LIVEDDPNLLKTLKYNLNKESYDVVIAADGEQALEVARKEKPDLILLDIML--PKLSGFE 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAIY 116 + RI+R P++ ++ + + G DD V KP RE+ + R I Sbjct: 64 VCRILRKEMNSPILMLTAKADETDKIVGLEIGADDYVTKPFSMRELIARVRAMLRRTQIM 123 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + G IRV D + + L +E +L +L N+G ++ Q+ Sbjct: 124 ETKPSEDKIIKIGDIRVDIDRHQASLAEVILELKPKEFDLLAFLARNKGLVFSREQLLEK 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 ++G +D A + V+ HI LR+K+ + + + R GY ++ Sbjct: 184 VWG-YDYAGDTRTVDVHIRWLRQKIENDPGNPTYLVTVRGTGYKLE 228 >gi|226312004|ref|YP_002771898.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226094952|dbj|BAH43394.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 238 Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 40/233 (17%), Positives = 95/233 (40%), Gaps = 15/233 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ + ++ ++ E + + D+ ++ L G + Sbjct: 7 ILVVDDEERIRRLLKMYLERENFLIDEADNGEQAVEMAVGSDYDIILLDLML--PGMDGI 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-------- 113 E+ + +R P+I ++ + F++GVDD V KP RE++ RV Sbjct: 65 EVCQRVREFKATPIIMLTAKGEETNRVHGFEAGVDDYVVKPFSPREVMYRVKAILRRSSA 124 Query: 114 --AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + S++ + + D G+ L +E +L YL + K + Sbjct: 125 TAYLKTETFNSHSVLVFPELTIDHDAHKVIASGQEVSLTPKEYELLHYLALSPDKVFTRE 184 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSIDW 222 ++ ++ ++ + V++HI +LR+KL + + + + +GY ++ Sbjct: 185 ELLKDVW-HYEFFGDLRTVDTHIKRLREKLNRVSPQAANMIATVWGVGYKLEV 236 >gi|220929311|ref|YP_002506220.1| transcriptional regulator [Clostridium cellulolyticum H10] gi|219999639|gb|ACL76240.1| two component transcriptional regulator, winged helix family [Clostridium cellulolyticum H10] Length = 228 Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 40/223 (17%), Positives = 88/223 (39%), Gaps = 6/223 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + +G + + + ++ L G + Sbjct: 8 LIVDDDRNICELIGLYLEKEGYEVLYAYNGLNAVDTFKIQTPSLVVLDIML--PGIDGWQ 65 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR S +P+I ++ + + G DD + KP +E++ARV A+ RR + Sbjct: 66 VCREIRKVSSIPIIMLTAKGETFDKVLGLELGADDYMVKPFEPKELVARVKAVLRRYEYK 125 Query: 123 NNRAETGPIRVFSDGRDPEVQG---EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + + LP +E +L +L +N K + Q+ ++G Sbjct: 126 EVDTQEVAFPNLIINKSNYTIRLKGNLIELPPKELELLFFLASNPNKVFTREQLLERVWG 185 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 FD + V+ H+ ++R+K+ + + + +GY + Sbjct: 186 -FDFYGDSRTVDVHVKRVREKIDLEGQPWQLKTVWGVGYKFEV 227 >gi|84514488|ref|ZP_01001852.1| phosphate regulon transcriptional regulatory protein PhoB [Loktanella vestfoldensis SKA53] gi|84511539|gb|EAQ07992.1| phosphate regulon transcriptional regulatory protein PhoB [Loktanella vestfoldensis SKA53] Length = 229 Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 44/223 (19%), Positives = 85/223 (38%), Gaps = 8/223 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D ++ +G + L + D+ ++ L G +E Sbjct: 9 LVVEDEPAQREVLAYNLESEGFRVIKAADGNEALLLIEEEQPDLILLDWML--PGTSGIE 66 Query: 63 LPRII---RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYR 117 + R I A P+I +S + ++G DD ++KP E+ + Sbjct: 67 ICRQIKSRPAFRMTPVIMLSARSEEVDKVRGLETGADDYISKPYSIIELLARVKAHLRRS 126 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 R R I + S+ L E R+L M G+ ++ Q+ + Sbjct: 127 RPATMGERLIYNDILLDSETHKVFRGENELKLGPTEFRLLTTFMEKPGRVWSRDQLLDRV 186 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G D V+ V+ H+ +LRK L + G D + + R GY++ Sbjct: 187 WGR-DIYVDTRTVDVHVGRLRKVLGSHGGEDLIRTVRGAGYAL 228 >gi|239827570|ref|YP_002950194.1| two component transcriptional regulator, winged helix family [Geobacillus sp. WCH70] gi|239807863|gb|ACS24928.1| two component transcriptional regulator, winged helix family [Geobacillus sp. WCH70] Length = 240 Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 40/232 (17%), Positives = 89/232 (38%), Gaps = 14/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ + ++ ++ + DV ++ L G + Sbjct: 9 ILVVDDEERIRRLLKMYLERENYIIDEADNGDDALEKALENDYDVILLDLML--PGRDGI 66 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-------- 113 E+ + IR P+I ++ + F+ G DD + KP RE++ RV Sbjct: 67 EVCKGIREKKATPIIMLTAKGEESNRVQGFEVGTDDYIVKPFSPREVVLRVKALLRRAAN 126 Query: 114 -AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 A + + + + +D V G+ L +E +L +L + K + Q Sbjct: 127 TAYVLADTTAKDVLVFPHLTIDNDAHRVTVDGQEVNLTPKEYELLLFLARSPDKVFDREQ 186 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN--KLGFDPVDSKRFLGYSIDW 222 + ++ ++ + V++HI +LR+KL + + +GY + Sbjct: 187 LLKEVW-HYEFFGDLRTVDTHIKRLREKLNKVSPTAAKMIVTVWGVGYKFEV 237 >gi|148656414|ref|YP_001276619.1| two component transcriptional regulator [Roseiflexus sp. RS-1] gi|148568524|gb|ABQ90669.1| two component transcriptional regulator, winged helix family [Roseiflexus sp. RS-1] Length = 224 Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 44/221 (19%), Positives = 96/221 (43%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A + +G ++E + + D+ ++ L G L Sbjct: 4 ILIVEDEAEIAGYLRRGLTFEGYTVEIASDGRQALDIAREQPPDLVVLDLML--PGIDGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119 E+ R +RA S VP+I ++ ++ + ++G DD + KP E+ RV R+ Sbjct: 62 EVARRLRAASDVPIIMLTARDAIPDRVAGLEAGADDYLIKPFAFEELLARIRVQLRRRQR 121 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + GP+ + + + L +E +LE M + + + + I+ ++G Sbjct: 122 EDAATVLRYGPLTMDLAAHEVTIGDRRVDLTAKEYDLLELFMRHPQQVLTRDVIYDRVWG 181 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ E N++E ++ LR+KL + + R +GY + Sbjct: 182 -YNFGGESNIIEVYVRYLRQKLEAHGEPRLIHTVRGVGYIL 221 >gi|323706155|ref|ZP_08117723.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium xylanolyticum LX-11] gi|323534448|gb|EGB24231.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium xylanolyticum LX-11] Length = 231 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 48/225 (21%), Positives = 92/225 (40%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + +G S E + D+ ++ L Sbjct: 4 ILIVDDEKPIVEILKYNLEKNGYSTIEAYDGEEGLKMAQEKNPDLILLDVML--PKMDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + RI+R P++ ++ + + G DD V KP RE++ARV A RR + Sbjct: 62 TVLRILRQTMTTPILMLTAKEEEVDKVLGLELGADDYVTKPFSMRELIARVKANLRRSGI 121 Query: 122 SNNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 SN + + E G+ L RE +L++L+ANRG ++ + Sbjct: 122 SNGETMSNVLSVNSLNIDLSKYRVEKNGKPIELTSREFDLLKFLVANRGLIFSREMLLEK 181 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 ++G ++ + V+ I +LR+K+ + + +KR +GY Sbjct: 182 VWG-YEYFGDVRTVDVTIRRLREKIEDDPANPRYIHTKRGVGYYF 225 >gi|312135255|ref|YP_004002593.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor owensensis OL] gi|311775306|gb|ADQ04793.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor owensensis OL] Length = 223 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 36/223 (16%), Positives = 92/223 (41%), Gaps = 6/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD + + +G + ++ + + D+ ++ L + Sbjct: 3 ILVIDDDVKICEVIKLYLEKEGFEVVVAHNGMDGISVFKNEMPDLVILDIML--PKKDGY 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 ++ R +R S +P+I ++ + + G DD + KP +E++AR+ + Sbjct: 61 DVCRELRKISNIPIIMLTAKGETFDKVLGLELGADDYIVKPFDPKELIARIKAVLRRTQG 120 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + V + +++ +V +P +E +L +L ++ K + Q+ I+ Sbjct: 121 EVNDEKVVVYPNLTVNLTTYEVKLEDKVIDMPPKEIELLYFLASHPNKVFTREQLLDHIW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 G ++ + V+ HI ++R+K+ + + +GY + Sbjct: 181 G-YNFVGDTRTVDVHIKRIREKIEKDKYPWKIKTVWGVGYKFE 222 >gi|300854423|ref|YP_003779407.1| putative transcriptional regulator [Clostridium ljungdahlii DSM 13528] gi|300434538|gb|ADK14305.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM 13528] Length = 231 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 49/224 (21%), Positives = 94/224 (41%), Gaps = 5/224 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 +++DD + + +G + + + ++ L G V Sbjct: 6 ILIVDDEEHICELIKFNLEKNGYKTIVAGNGIDALKIVKEEMPQLILLDVMLPGMDGYDV 65 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119 + R A S +P+I I+ + + G DD + KP RE++ARV A+ RR Sbjct: 66 CKEIRRDNAISFIPVIMITARGEEFDKVLGLELGADDYMTKPFSIRELVARVKAVLRRTA 125 Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 K + G + + D + GE L +E +L+ L+ NRG+ + + + I+ Sbjct: 126 LKPVDKCYVFGQVSIDFDKHEVIKNGEKVELTLKEFELLKMLIKNRGRVMTRDFLLDKIW 185 Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 G ++ E V+ HI LR+K+ + +++ R +GY + Sbjct: 186 G-YEYVGETRTVDVHIRHLRQKIEDFDKKPKYIETIRGIGYRFN 228 >gi|229916056|ref|YP_002884702.1| two component transcriptional regulator, winged helix family [Exiguobacterium sp. AT1b] gi|229467485|gb|ACQ69257.1| two component transcriptional regulator, winged helix family [Exiguobacterium sp. AT1b] Length = 221 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 51/223 (22%), Positives = 101/223 (45%), Gaps = 6/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + F D G + E L ++ D + ++ L G Sbjct: 3 ILIVEDDPSILRLVKETFEDAGHEVLTATDGNTGEELFTTQPIDAAIVDIML--PGLDGR 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL R ++A +P+I ++ + F+ G DD V KP E+L R+ A+ RR + Sbjct: 61 ELCRRLKATLDIPVILLTALDEWEDKRQGFELGADDYVTKPFIPEELLFRLQAVSRRYQR 120 Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 S R+ + ++G++F LP++E +L L + G+ + ++ ++G Sbjct: 121 SAASQIQAGPLRLDLREYEVTLEGQLFYLPKKEFELLFQLASFPGRVYRREELIELVWG- 179 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 FD +E V+ HI +LR + + + + R +GY+++ N Sbjct: 180 FDFEGDERTVDVHIKRLRNRFDHPALT--IRTVRGVGYALEVN 220 >gi|205374546|ref|ZP_03227342.1| response regulator PhoP [Bacillus coahuilensis m4-4] Length = 238 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 49/233 (21%), Positives = 92/233 (39%), Gaps = 15/233 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + G ++ N E L S + D ++ L + Sbjct: 5 ILVVDDEQSIVTLLKYNLEQAGYTVLTANDGEEGYELAMSDKPDFIVLDLML--PKMDGI 62 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ + +R + P++ ++ + + G DD + KP RE++AR+ AI RR + Sbjct: 63 EVCKNLRQQKMMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARIKAILRRTQ 122 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVF----------PLPRRERRILEYLMANRGKRVAK 170 A L +E +L YL N+G+ + + Sbjct: 123 TLIQSAVEEQDPKDYLKVGELKVYPEHYEAFIGEELLELTPKEFELLLYLTENKGRVLTR 182 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDW 222 Q+ SA++ +D A + +V+ HIS LR K+ + + R LGY ++ Sbjct: 183 DQLLSAVW-NYDFAGDTRIVDVHISHLRDKIEQNTKKPIYIKTIRGLGYKLEE 234 >gi|261410069|ref|YP_003246310.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261286532|gb|ACX68503.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] Length = 225 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 45/221 (20%), Positives = 99/221 (44%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD A +++ + +G ++ E L + + ++ ++ + Sbjct: 4 ILIADDDAHIRELLLYHLQTEGYTVFTAADGEEASALLAEEQVHLAVVDVM--MPNKDGY 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 +L IR + VP+I ++ L F G DD + KP RE+L R+ A+ RR ++ Sbjct: 62 QLCEEIRRYYDVPVILLTAKDQLVDKERGFAVGTDDYLTKPFEPRELLFRIKALLRRYQM 121 Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + + + G+V LP +E +L L + + ++ ++ I+G Sbjct: 122 VSADKIRLNETTIDRKSYEVQGHGKVLMLPMKEFELLSQLASYPDRTFSREELIQLIWGT 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D ++ V+ HI +LR++ ++ G + + R +GY ++ Sbjct: 182 -DFDGDDRTVDVHIKRLRERFADRSGDFRIRTVRGVGYKLE 221 >gi|326391416|ref|ZP_08212953.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus JW 200] gi|325992551|gb|EGD51006.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus JW 200] Length = 231 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 42/225 (18%), Positives = 86/225 (38%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++DD + + + +G S+ + + D+ ++ L G Sbjct: 5 IFVVDDEIKILEVVKSYLEHEGFSVITETNGNNVLNTLKKEKPDLVILDLML--PGISGE 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116 EL + IR S VP++ ++ ++ F G DD + KP RE++ R Sbjct: 63 ELCKRIRQFSNVPILMLTAKVQESDKINGFSIGADDYLTKPFSPRELVMRVKAILRRTSD 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + V + +G V L E +IL++L+ N + + ++ Sbjct: 123 DVPLAEVMSFNNDDLVVDFKAHTVKKKGVVVNLTPNEFKILKFLIRNPNRVFTREELIEK 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 + G FD + +++HI LR+K+ + + + +GY Sbjct: 183 VMG-FDYEGYDRTIDAHIKNLRQKIEDDTKNPVYIKTVYGVGYKF 226 >gi|229074768|ref|ZP_04207787.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock4-18] gi|229096067|ref|ZP_04227041.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock3-29] gi|229115024|ref|ZP_04244435.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock1-3] gi|228668440|gb|EEL23871.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock1-3] gi|228687359|gb|EEL41263.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock3-29] gi|228708366|gb|EEL60520.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock4-18] Length = 243 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 35/232 (15%), Positives = 91/232 (39%), Gaps = 14/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ + ++E ++ + + D+ ++ G+ + Sbjct: 12 ILIVDDEDRIRRLLKMYLEREQYTIEEADNGDTALEMALQNDYDLILLDLM--MPGKDGI 69 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV--------- 112 E+ + +R P+I ++ + F+ G DD + KP RE++ RV Sbjct: 70 EVCKGVREKKATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRRAVP 129 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + + + + + +D G L +E +L +L K + Q Sbjct: 130 TTFFTQDTTTKDVTVFPHLTIDNDAHRVTADGNEVNLTPKEYELLLFLAKAPDKVFDREQ 189 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL--RNKLGFDPVDSKRFLGYSIDW 222 + ++ ++ + V++H+ +LR+KL ++ + + +GY + Sbjct: 190 LLKEVW-QYEFFGDLRTVDTHVKRLREKLSKKSPDAAKMIVTVWGVGYKFEV 240 >gi|313904351|ref|ZP_07837729.1| two component transcriptional regulator, winged helix family [Eubacterium cellulosolvens 6] gi|313470901|gb|EFR66225.1| two component transcriptional regulator, winged helix family [Eubacterium cellulosolvens 6] Length = 236 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 47/232 (20%), Positives = 92/232 (39%), Gaps = 15/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + N E SS D+ ++ L G Sbjct: 7 ILIVDDDNNIAELISLYLTKECFECTIVNDGEEALRAVSSFSPDLILLDLML--PGMDGY 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R S VP+I +S + + + G DD + KP +E++ARV A+ RR + Sbjct: 65 EVCREVRHKSNVPIIMLSAKGEVFDKVLGLEMGADDYMIKPFDSKELVARVKAVLRRFQQ 124 Query: 122 SN-----------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 E + V +G +P +E +L +L ++ + + Sbjct: 125 IPAVVTEPSTPSEKMVEFPDLTVNLTNYSVIYKGNTLEMPPKELELLYFLASSPNQVFTR 184 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 Q+ I+G ++ + V+ HI +LR+K+ + + +GY + Sbjct: 185 EQLLDNIWG-YEYVGDTRTVDVHIKRLREKIPGNTHWSL-STVWGIGYKFEV 234 >gi|302520777|ref|ZP_07273119.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. SPB78] gi|302429672|gb|EFL01488.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. SPB78] Length = 244 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 90/228 (39%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V++ +G +E ++ D+ ++ G L Sbjct: 15 ILVVDDEPAVREALRRSLVFEGYGVEVAADGHEALQKAAATPPDLVVLDI--QMPGMDGL 72 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL--------ARV 112 R +RA S VP++ ++ ++ + D+G DD + KP E+ Sbjct: 73 TAARRLRATGSTVPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSS 132 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 A+ ++ G +R+ R+ G L R E +LE +A+ + + + Q Sbjct: 133 YAVAQQAADDEETLAFGDLRMNLATREVTRGGRAVELTRTEFTLLEMFLAHPRQVLTREQ 192 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I ++G FD N ++ ++ LR+K V + R +GY + Sbjct: 193 ILKTVWG-FDFEPSSNSLDVYVMYLRRKTEAGGEPRLVHTVRGVGYVL 239 >gi|302870792|ref|YP_003839428.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor obsidiansis OB47] gi|302573651|gb|ADL41442.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor obsidiansis OB47] Length = 230 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 44/227 (19%), Positives = 97/227 (42%), Gaps = 8/227 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + E S D+ ++ L Sbjct: 6 ILVVDDEKPIVDIIKFNLEKEGYKVTTSYDGEDALNRIKSGNFDMVLLDVML--PKIDGF 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + +R S VP+I I+ + + G DD + KP RE++AR+ A RR Sbjct: 64 SVCKKVREFSDVPIIMITAKADEVDKVLGLELGADDYITKPFGIRELIARIRANLRRTAQ 123 Query: 122 SNNRAETGPI----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 S+ + + + + + G++ L RE +L++LM+ +G+ ++ ++ + Sbjct: 124 SSAQDGKVLKAGALTLNPETFEVKKNGKIIELTVREYELLKFLMSQKGQVFSREELLEKV 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223 + ++ + V+ + +LR+K+ + + +KR +GY + N Sbjct: 184 WD-YEYYGDVRTVDVTVRRLREKIEDNPSEPTFILTKRGIGYYFNPN 229 >gi|160937676|ref|ZP_02085036.1| hypothetical protein CLOBOL_02566 [Clostridium bolteae ATCC BAA-613] gi|158439321|gb|EDP17073.1| hypothetical protein CLOBOL_02566 [Clostridium bolteae ATCC BAA-613] Length = 236 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 46/232 (19%), Positives = 96/232 (41%), Gaps = 15/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A + + + E + + ++ ++ L G Sbjct: 7 ILIVDDDANIAELISLYLMKECYETMIVGDGEEALKVFPEFKPNLVLLDLML--PGIDGY 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 ++ R +RA SQVP+I +S + + + G DD + KP +E++ARV A+ RR + Sbjct: 65 QVCRELRASSQVPVIMLSAKGEIFDKVLGLELGADDYMIKPFDSKELVARVKAVLRRYQA 124 Query: 121 ----------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 E + V G +P +E +L +L A+ + + Sbjct: 125 APAPAPSSTEQQGEYVEYPDLIVNLTNYSVIYMGHSVEMPPKELELLYFLAASPNQVFTR 184 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 Q+ I+G ++ + V+ HI +LR+K+++ + + + +GY + Sbjct: 185 EQLLDHIWG-YEYIGDTRTVDVHIKRLREKIKDHNSWA-ITTVWGIGYKFEV 234 >gi|157363849|ref|YP_001470616.1| two component transcriptional regulator [Thermotoga lettingae TMO] gi|157314453|gb|ABV33552.1| two component transcriptional regulator, winged helix family [Thermotoga lettingae TMO] Length = 263 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 47/230 (20%), Positives = 96/230 (41%), Gaps = 14/230 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + +G + E + + D+ ++ L G Sbjct: 30 ILVVDDDPSIIELVSYNLAREGYDVLKAYDAEEALKVVGNESVDMFIVDIML--PGMDGF 87 Query: 62 ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 EL R +R+ P++ +S + + G DD + KP RE++AR+ A++RR Sbjct: 88 ELVRQLRSMEKYRNTPVVFLSAKGEEFDKVLGLELGADDYITKPFSIREMIARIKAVFRR 147 Query: 119 LKVSNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 +++S E P + + + + +V + L E +L +L N GK ++ Sbjct: 148 IQLSAQEREERPKKIVAKGLEIDVERYEVKVHDQKVSLTPLEFELLRFLAENEGKVFSRD 207 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220 + ++G +D + V+ HI +LR K+ + + + R GY Sbjct: 208 VLLDKLWG-YDYYGDTRTVDVHIRRLRTKIEEDPSNPKYIITVRGKGYKF 256 >gi|296133876|ref|YP_003641123.1| two component transcriptional regulator, winged helix family [Thermincola sp. JR] gi|296032454|gb|ADG83222.1| two component transcriptional regulator, winged helix family [Thermincola potens JR] Length = 231 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 44/225 (19%), Positives = 88/225 (39%), Gaps = 9/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + + + L + D+ ++ L E Sbjct: 7 LVVDDEPKILKILEHTLKKERFQVITAQNGMEAVELAAKVSPDLVLLDLML--PDIDGFE 64 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121 + R I++ S +P+I +S + F G+DD KP E++ R+ A+ RR K Sbjct: 65 VCRRIKSRSDIPIIVLSAKDDEVDKIVGFKLGIDDYQTKPFSPTELVLRIRAVLRRSKGC 124 Query: 122 ----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 ++ I + R V G L +E +L L + + ++ Q+ I Sbjct: 125 KEAANDGILTYKDIEINQRTRQVRVYGRNVNLTVKEFDLLWLLASYPNQVFSRMQLLEKI 184 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 + +EN V HI +LR+K+ + + + + +GY + Sbjct: 185 WDSS-YYGDENTVTVHIRRLREKIENDPADPEFIKTIWGIGYKFE 228 >gi|168187034|ref|ZP_02621669.1| transcriptional regulatory protein ResD [Clostridium botulinum C str. Eklund] gi|169295053|gb|EDS77186.1| transcriptional regulatory protein ResD [Clostridium botulinum C str. Eklund] Length = 228 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 40/224 (17%), Positives = 92/224 (41%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + G S E + + + D+ ++ L + Sbjct: 8 ILIVDDDENICEIIKMYLESSGYSTECCYDGKSAQGAFFEYKPDLVLLDVML--PHMDGI 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 ++ + IR S+ P+I ++ + + G DD + KP +E++AR+ Y Sbjct: 66 DVLKWIRKESETPVIMLTAKGETFDKVLALELGADDYIVKPFEPKELIARIKAVLRRYNV 125 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + + + + + +P +E +L YL +N K + Q+ ++ Sbjct: 126 ENEDKDVLKFKSLTIDINSYIVVYKENEIKMPPKEFELLYYLASNCNKVFTREQLLCEVW 185 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 G +D + V+ HI +LR+KL+ + +++ +GY + Sbjct: 186 G-YDYPGDSRTVDVHIKRLREKLQGGPNWQ-IETVWGVGYKFEV 227 >gi|15615719|ref|NP_244023.1| two-component response regulator involved in phosphate regulation [Bacillus halodurans C-125] gi|10175779|dbj|BAB06876.1| two-component response regulator involved in phosphate regulation [Bacillus halodurans C-125] Length = 239 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 38/233 (16%), Positives = 90/233 (38%), Gaps = 15/233 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + G + L + D+ ++ L L Sbjct: 5 LLVVDDEESIVTLLQFNLEQSGYEVVTAMDGASGLQLAKTQTFDLIILDLML--PEMDGL 62 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILA 110 ++ + +R P++ ++ + + G DD + KP R + Sbjct: 63 DVCKQLRQSKVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVRAILRRVG 122 Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + S + G + ++ D + ++G+ L +E +L YL ++G+ + + Sbjct: 123 HAQNNHEDNSRSTSTLSFGNVEIYPDNYEVYLKGQPLELTPKEFELLLYLANHKGRVLTR 182 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDW 222 Q+ +A++ ++ + +V+ HIS LR+K+ + + R LGY ++ Sbjct: 183 DQLLNAVW-NYEFVGDTRIVDVHISHLREKIEPNTKKPIYIKTIRGLGYKLEE 234 >gi|319442833|ref|ZP_07991989.1| two-component system response regulator MtrA [Corynebacterium variabile DSM 44702] Length = 224 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 44/220 (20%), Positives = 90/220 (40%), Gaps = 5/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + +G S + D+ ++ L G + Sbjct: 5 ILVVDDDPAISEMLTMVLQGEGFSTVTVGDGAEAVEAARTQHPDLILLDLML--PGMNGV 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R +R S VP++ ++ + +SG DD V KP +E++ARV A RR+ Sbjct: 63 DVCRAVRDFSAVPIVMLTAKTDTVDVVLGLESGADDYVPKPFKPKELVARVRARLRRIPE 122 Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 G + + G G V L E +L L + + ++ ++ ++G Sbjct: 123 ETPDTATVGDVTIDFGGHQVTRDGAVIQLTPIEFELLGTLASRPRQVFSREELLERVWG- 181 Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219 + + + +V HI +LR K+ + + + R +GY Sbjct: 182 YRKNSDTRLVNVHIQRLRSKVEKDPDNPVIIQTVRGVGYK 221 >gi|167036701|ref|YP_001664279.1| two component transcriptional regulator [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320115125|ref|YP_004185284.1| response regulator receiver [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166855535|gb|ABY93943.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319928216|gb|ADV78901.1| response regulator receiver [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 231 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 42/225 (18%), Positives = 86/225 (38%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++DD + + + +G S+ + + D+ ++ L G Sbjct: 5 IFVVDDEIKILEVVKSYLEHEGFSVITETNGNNVLNTFKKEKPDLVILDLML--PGISGE 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116 EL + IR S VP++ ++ ++ F G DD + KP RE++ R Sbjct: 63 ELCKRIRQFSNVPILMLTAKVQESDKINGFSIGADDYLTKPFSPRELVMRVKAILRRTSD 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + V + +G V L E +IL++L+ N + + ++ Sbjct: 123 DVPLAEVMSFNNDDLVVDFKAHTVKKKGVVVNLTPNEFKILKFLIRNPNRVFTREELIEK 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 + G FD + +++HI LR+K+ + + + +GY Sbjct: 183 VMG-FDYEGYDRTIDAHIKNLRQKIEDDTKNPVYIKTVYGVGYKF 226 >gi|196047620|ref|ZP_03114827.1| DNA-binding response regulator ResD [Bacillus cereus 03BB108] gi|196021534|gb|EDX60234.1| DNA-binding response regulator ResD [Bacillus cereus 03BB108] Length = 238 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 35/232 (15%), Positives = 91/232 (39%), Gaps = 14/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ + ++E ++ + + D+ ++ G+ + Sbjct: 7 ILIVDDEDRIRRLLKMYLEREQYTIEEADNGDIALEMALQNDYDLILLDLM--MPGKDGI 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV--------- 112 E+ + +R P+I ++ + F+ G DD + KP RE++ RV Sbjct: 65 EVCKGVREKKATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRRSVP 124 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + + + + + +D G L +E +L +L K + Q Sbjct: 125 TTFFTQDTTTKDVTVFPHLTIDNDAHRVTADGNEVNLTPKEYELLLFLAKAPDKVFDREQ 184 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL--RNKLGFDPVDSKRFLGYSIDW 222 + ++ ++ + V++H+ +LR+KL ++ + + +GY + Sbjct: 185 LLKEVW-QYEFFGDLRTVDTHVKRLREKLSKKSPDAAKMIVTVWGVGYKFEV 235 >gi|17230752|ref|NP_487300.1| two-component response regulator [Nostoc sp. PCC 7120] gi|17132355|dbj|BAB74959.1| two-component response regulator [Nostoc sp. PCC 7120] Length = 238 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 34/225 (15%), Positives = 85/225 (37%), Gaps = 8/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V++ +E + L D+ ++ L Sbjct: 6 ILVVDDDPAVRNLIQRFLIKQNYQVEAAEDGKTALSLFEQFNPDLVILDINL--PDVIGF 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH----HREILARVAAIYR 117 L + +++ + V ++ ++ + F G DD + KP + A + Sbjct: 64 NLCQEMQSRNGVFVLMLTSRADEADKIRGFAKGADDYLTKPFGLGELEVRVGAILRRQRV 123 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 R + + R+ + + PL E +L +L ++ G+ + ++ + Sbjct: 124 VTTAEQKRLTFEKLMIDPVRREVTLNSQAVPLTALEFDLLHFLASHPGRVWRRAELIQEV 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 + ++ ++ VV+ HI ++RKK+ + + + R +GY + Sbjct: 184 WD-YEYVGDQRVVDVHIGQIRKKIEVDASQPALIQTVRGVGYKFE 227 >gi|323140625|ref|ZP_08075549.1| transcriptional regulatory protein ResD [Phascolarctobacterium sp. YIT 12067] gi|322414889|gb|EFY05684.1| transcriptional regulatory protein ResD [Phascolarctobacterium sp. YIT 12067] Length = 234 Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 43/226 (19%), Positives = 90/226 (39%), Gaps = 9/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD A +++ F +G + S + D+ ++ + Sbjct: 8 ILIADDEAQIREILRIYFEKEGFEVIEAEDGAAAILKVQSEKPDILLLDIM--MPVLDGI 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116 E+ + +R S +P+I ++ + + G DD + KP + RE++AR A Sbjct: 66 EVCKQVRKMSDLPIIMVTAKDDDDDRIAGLEIGADDYITKPFNSREVVARVKAVLRRAGT 125 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + K +R + + D G +E +L L +N GK ++ Q+ Sbjct: 126 QEKKGEVSRITYPGLIIDMDQYQVTAFGNKMTFTTKEMELLWCLASNPGKAFSRNQLLET 185 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221 I+G + + V++HI ++R+KL + + +GY + Sbjct: 186 IWG-YSYYGDTRTVDTHIKRIRQKLNIPPDSKWDITTIWGVGYKFE 230 >gi|302554749|ref|ZP_07307091.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces viridochromogenes DSM 40736] gi|302472367|gb|EFL35460.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces viridochromogenes DSM 40736] Length = 249 Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 42/223 (18%), Positives = 82/223 (36%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V + G ++ + ++ D+ ++ L G L Sbjct: 17 ILVVDDDPTVAEVVAGYLDRAGYLVDRADDGPTALTRAAAHWPDLVVLDLML--PGMDGL 74 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--ILARVAAIYRRL 119 E+ R +R H VP+I ++ + + G DD V KP RE + R Sbjct: 75 EVCRRMRGHGPVPVIMLTARGDEDDRILGLEVGADDYVTKPFSPRELVLRVESVLRRSRP 134 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +R + V R G L RE +L + + + G+ + + ++G Sbjct: 135 AAPGHRLGAAGLAVDPAARRATKNGSELALTLREFDLLSFFLRHPGRAFGREDLMREVWG 194 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221 + + V H+ +LR K+ + + + +GY D Sbjct: 195 WD--FGDLSTVTVHVRRLRGKVEDDPARPRLIQTVWGVGYRFD 235 >gi|222528131|ref|YP_002572013.1| winged helix family two component transcriptional regulator [Caldicellulosiruptor bescii DSM 6725] gi|312621184|ref|YP_004022797.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor kronotskyensis 2002] gi|222454978|gb|ACM59240.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor bescii DSM 6725] gi|312201651|gb|ADQ44978.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor kronotskyensis 2002] Length = 230 Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 44/227 (19%), Positives = 98/227 (43%), Gaps = 8/227 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + E + D+ ++ L Sbjct: 6 ILVVDDEKPIVDIIKFNLEKEGYKVTASYDGEDALNRIKNENFDMVLLDVML--PKLDGF 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + +R S VP+I I+ + + G DD + KP RE++AR+ A RR Sbjct: 64 SVCKKVREFSDVPIIMITAKADEVDKVLGLELGADDYITKPFGIRELIARIRANLRRTAQ 123 Query: 122 SNNRAETG----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 S + + + + + + G+V L RE +L++LM+ +G+ ++ ++ + Sbjct: 124 SAAQDGKVLKAGNLTLNPETFEVKKDGKVIELTVREYELLKFLMSQKGQVFSREELLEKV 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223 + ++ + V+ + +LR+K+ + + + +KR +GY + N Sbjct: 184 WD-YEYYGDVRTVDVTVRRLREKIEDNPSEPNFILTKRGIGYYFNPN 229 >gi|28209958|ref|NP_780902.1| transcriptional regulatory protein [Clostridium tetani E88] gi|28202393|gb|AAO34839.1| transcriptional regulatory protein [Clostridium tetani E88] Length = 246 Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 38/224 (16%), Positives = 89/224 (39%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + G + + + + D+ ++ L + Sbjct: 26 ILIVDDDQNICEVIKMYLESAGFDTRVCHDGKESQSIFIEYNPDLVLLDIML--PSMDGI 83 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118 ++ + IR + P+I ++ + + G DD + KP +E + V + Sbjct: 84 DVLKWIRKEHETPVIMLTAKGETFDKVLGLELGADDYMVKPFEPKELLARVKAVLRRFNS 143 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 VS + + + D G+ +P +E +L YL +N+ + + Q+ ++ Sbjct: 144 DNVSKEALQFNGLTIDIDSYTVIYNGKEIKMPPKEFELLYYLASNKNRVFTREQLLCEVW 203 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 G +D + V+ HI +LR+KL + +++ +GY + Sbjct: 204 G-YDYPGDSRTVDVHIKRLREKLEEGSNWQ-IETVWGVGYKFEV 245 >gi|325288683|ref|YP_004264864.1| two component transcriptional regulator, winged helix family [Syntrophobotulus glycolicus DSM 8271] gi|324964084|gb|ADY54863.1| two component transcriptional regulator, winged helix family [Syntrophobotulus glycolicus DSM 8271] Length = 229 Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 54/224 (24%), Positives = 95/224 (42%), Gaps = 4/224 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD +++ + + + S ++ Sbjct: 8 ILVADDEPKMRELIALYLKRENFEVTAVEDGMKALAELEEKGDVFSLFMIDVMMPNMDGF 67 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119 L R IR+ S P+I I+ L F+ G DD + KP RE+ ARV A Sbjct: 68 ALCREIRSFSDKPVIFITAKGEEYERLMGFELGADDYIVKPFSPREMTARVKAVLKRANP 127 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 TG I++ +GR+ V GE L +E +L +L+ N+GK +++ I ++ Sbjct: 128 VQGEELIHTGQIKINVEGREVSVGGEQINLTPKEFDLLVFLINNKGKVLSREHITRKVWD 187 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 +D ++ V++HI KLR+KL K G + + + +GY + N Sbjct: 188 -YDYFGDQRTVDTHIKKLREKLGEKAGNE-IKTIWGVGYKFEVN 229 >gi|296268488|ref|YP_003651120.1| winged helix family two component transcriptional regulator [Thermobispora bispora DSM 43833] gi|296091275|gb|ADG87227.1| two component transcriptional regulator, winged helix family [Thermobispora bispora DSM 43833] Length = 229 Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats. Identities = 54/224 (24%), Positives = 101/224 (45%), Gaps = 8/224 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D D + +G + S + D+ ++ L G E Sbjct: 5 LVVEDEESFSDALSYMLRKEGFEVAVAASGPEALEVFDREGADLVLLDLML--PGLPGTE 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +R S+VP+I ++ S + + G DD V KP RE++AR+ A+ RR + Sbjct: 63 VCRSLRQRSKVPVIMLTAKDSEIDKIVGLELGADDYVTKPFSSRELVARIRAVLRRRGDA 122 Query: 123 NNRAETG----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + P+R+ D V+GE LP +E +LE L+ N G+ + + Q+ ++ Sbjct: 123 EEPSSSVLAAGPVRMDVDRHVVTVRGEKVQLPLKEFELLEVLLRNAGRVLTRGQLIDRVW 182 Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 G D + ++ HI +LR K+ + + + R LGY + Sbjct: 183 GA-DYVGDTKTLDVHIKRLRAKIEPDPSKPRYILTVRGLGYKFE 225 >gi|295399496|ref|ZP_06809478.1| two component transcriptional regulator, winged helix family [Geobacillus thermoglucosidasius C56-YS93] gi|312109946|ref|YP_003988262.1| transcriptional regulator [Geobacillus sp. Y4.1MC1] gi|294978962|gb|EFG54558.1| two component transcriptional regulator, winged helix family [Geobacillus thermoglucosidasius C56-YS93] gi|311215047|gb|ADP73651.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y4.1MC1] Length = 235 Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 96/228 (42%), Gaps = 11/228 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + G ++ N E ++ R + ++ L +E Sbjct: 6 LVVDDEQSIVTLLTYNLERAGFTVVTANDGEEAIEKVAAERPEFIILDLML--PKLDGVE 63 Query: 63 LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115 + + +R P++ ++ + + G DD + KP RE+ + R Sbjct: 64 VCKQLRQQKVMTPILMLTAKDDEFDKILGLELGADDYMTKPFSPREVVARVKAILRRTQF 123 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + ++ G +++F D + GE L +E +L YL ++G+ + + Q+ S Sbjct: 124 SNGETEAIDKIVIGDLKIFPDQYEAYFGGERLELTPKEFELLLYLAKHKGRVLTRDQLLS 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDW 222 A++ +D A + +V+ HIS LR+K+ + + R LGY ++ Sbjct: 184 AVW-NYDFAGDTRIVDVHISHLREKIEQDTKKPLYIKTIRGLGYKLEE 230 >gi|298246255|ref|ZP_06970061.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297553736|gb|EFH87601.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 247 Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats. Identities = 43/238 (18%), Positives = 86/238 (36%), Gaps = 22/238 (9%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D A + G ++ N L + + D+ ++ L + Sbjct: 4 ILVIEDEANIAQLLRLYLEQAGYAVVTANDGIAGIELHAREKPDLVILDLMLPM--LDGM 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-------- 113 E+ R IR + P++ ++ + + DSG DD + KP RE+++RV Sbjct: 62 EVCRRIRTWANTPILMLTARQGEEDRIAGLDSGADDYLVKPFSPREVISRVKAILRRAGL 121 Query: 114 ----------AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMAN 163 S GP+ + R V + L +E +L + Sbjct: 122 YSSPGVEGEGHHADEKSASGEELSYGPLLINIPARRVTVGPQALSLTVKEFDLLALMAKA 181 Query: 164 RGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 + + + + ++G + + V+ HI LRKKL + + + +GY Sbjct: 182 PDRVFTRETLLNQVWG-YSYLGDGRTVDVHIGTLRKKLESTKQVQQVIQTVWGVGYKF 238 >gi|332654085|ref|ZP_08419829.1| DNA-binding response regulator VicR [Ruminococcaceae bacterium D16] gi|332517171|gb|EGJ46776.1| DNA-binding response regulator VicR [Ruminococcaceae bacterium D16] Length = 240 Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats. Identities = 50/225 (22%), Positives = 97/225 (43%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ G ++G +E E L + D+ ++ L Sbjct: 11 ILVVDDERVLVKGITFNLKNEGYQVETGYDGEEAVELAREGKFDLIILDLM--MPKIDGL 68 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + IR S VP+I ++ + F+ G DD + KP + E+ ARV A+ RR Sbjct: 69 QACMRIREFSNVPIIMLTARSEDTDKIIGFECGADDYITKPFNILELKARVRALLRRSGA 128 Query: 122 SNNRA-----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + G IR+ + R G L +E ++E LM N G+ ++ + + Sbjct: 129 AVQHQAAGQLTVGHIRLDPNERSAWKDGVSVDLTAKEFDLMELLMRNPGRVYSRENLLNV 188 Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++G ++ + V+ H+ +LR+KL + + +K +GY + Sbjct: 189 VWG-YEYIGDYRTVDVHVRRLREKLELDPANPQYIRTKWGVGYYL 232 >gi|295107994|emb|CBL21947.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus obeum A2-162] Length = 233 Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats. Identities = 46/228 (20%), Positives = 93/228 (40%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + + N E ++ D+ ++ L G Sbjct: 7 ILIVDDDNNIAELISLYLTKECFETKIVNDGEQALKEFNTFHPDLILLDLML--PGIDGY 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R IR +S VP+I +S + + G DD + KP +E++ARV A+ RR KV Sbjct: 65 QVCREIRHNSDVPIIMLSAKGETFDKVLGLELGADDYIIKPFDTKELVARVRAVLRRFKV 124 Query: 122 SNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + G +P +E +L +L A+ + + Q+ Sbjct: 125 RQPAGNPDEKCVSFPDLTINLTNYSVTYMGRQVDMPPKELELLYFLAASPNQVFTREQLL 184 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 I+G ++ + V+ HI +LR+K+++ + + +GY + Sbjct: 185 DHIWG-YEYIGDTRTVDVHIKRLREKIKDHPQWSL-STVWGIGYKFEV 230 >gi|89895322|ref|YP_518809.1| hypothetical protein DSY2576 [Desulfitobacterium hafniense Y51] gi|89334770|dbj|BAE84365.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 230 Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats. Identities = 45/224 (20%), Positives = 98/224 (43%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD ++ +G ++ + L+ ++D + + L+ Sbjct: 4 ILVIDDEERIRHLVRMYLEREGYEVDEAGNGREA--LEKFQKQDYALLIVDLMMPEIDGW 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYR 117 ++ R +R S +P+I ++ + F+ G DD + KP +E++ARV Sbjct: 62 KVCRDVRERSDIPIIMLTARGEEFDRVLGFELGADDYLVKPFSTKELVARVKALLRRSRG 121 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 +S++ GP+++ D + E P RE +L +L N + ++ Q+ + Sbjct: 122 NTAISSSDLLFGPLKIEKDKHRVSIDDEQIPFTPREFELLYFLAKNPSRVFSREQLMETV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +G +D + V++H+ K+R+KL + + + +GY D Sbjct: 182 WG-YDFYGDARTVDTHVKKIREKLADPKVRSMLATVWGVGYKFD 224 >gi|294501502|ref|YP_003565202.1| two-component response regulator PhoP [Bacillus megaterium QM B1551] gi|294351439|gb|ADE71768.1| two-component response regulator PhoP [Bacillus megaterium QM B1551] Length = 238 Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats. Identities = 44/232 (18%), Positives = 91/232 (39%), Gaps = 14/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + G ++E E + D+ ++ L + Sbjct: 5 LLVVDDEQSISTLLQYNLQQAGFTVETAEDGEEGYNKALEGKPDLIVLDLML--PKMDGI 62 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILAR 111 E+ + +R P++ ++ + + G DD + KP RE + Sbjct: 63 EVCKKLRQQKVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTQ 122 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + A + R G +++ D + E L +E +L YL +G+ + + Sbjct: 123 IIAQENEQEEDGERIMIGDLKILPDHYEAYFNQEQLELTPKEFELLLYLAKYKGRVLTRD 182 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 Q+ SA++ +D A + +V+ HIS LR+K+ + + R LGY ++ Sbjct: 183 QLLSAVW-NYDFAGDTRIVDVHISHLREKIEQNTRKPVYIKTIRGLGYKLEE 233 >gi|332799517|ref|YP_004461016.1| winged helix family two component transcriptional regulator [Tepidanaerobacter sp. Re1] gi|332697252|gb|AEE91709.1| two component transcriptional regulator, winged helix family [Tepidanaerobacter sp. Re1] Length = 230 Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats. Identities = 45/225 (20%), Positives = 90/225 (40%), Gaps = 7/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G ++ + + SS D+ ++ L Sbjct: 7 ILVVDDEKRIVDLVRLYLEREGFIVDEAFEGQQALDMISSVSYDLIILDLML--PVIDGW 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYR 117 + + IR P+I ++ + F+ G DD V KP RE+ ARV + Sbjct: 65 TVCKKIREKYDTPVIMLTARGEEFDKVLGFELGADDYVVKPFSPRELTARVKALLRRMAS 124 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + + R +V G+ L +E +L +L N+GK + ++ + Sbjct: 125 KQDYEAEALIFPELLIDPAARVVKVDGKEVALTPKEFDLLYFLAKNKGKAFNREKLLKEV 184 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +G +D V++HI +LR+KL +++ +GY + Sbjct: 185 WG-YDFYGSLRTVDTHIKQLREKLGRSKAASYINTVWGIGYKFEV 228 >gi|318059644|ref|ZP_07978367.1| two-component system response regulator [Streptomyces sp. SA3_actG] gi|318078239|ref|ZP_07985571.1| two-component system response regulator [Streptomyces sp. SA3_actF] Length = 244 Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats. Identities = 44/228 (19%), Positives = 89/228 (39%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V++ +G +E ++ D+ ++ G L Sbjct: 15 ILVVDDEPAVREALRRSLVFEGYGVEVAADGHEALRKAAATPPDLVVLDI--QMPGMDGL 72 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL--------ARV 112 R +RA S VP++ ++ ++ + D+G DD + KP E+ Sbjct: 73 TAARRLRATGSTVPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSS 132 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 A+ ++ G +R+ R+ L R E +LE +A+ + + + Q Sbjct: 133 YAVAQQAADDEETLAFGDLRMNLATREVTRGDRAVELTRTEFTLLEMFLAHPRQVLTREQ 192 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I ++G FD N ++ ++ LR+K V + R +GY + Sbjct: 193 ILKTVWG-FDFEPSSNSLDVYVMYLRRKTEASGEPRLVHTVRGVGYVL 239 >gi|296134131|ref|YP_003641378.1| two component transcriptional regulator, winged helix family [Thermincola sp. JR] gi|296032709|gb|ADG83477.1| two component transcriptional regulator, winged helix family [Thermincola potens JR] Length = 224 Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats. Identities = 57/221 (25%), Positives = 98/221 (44%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD A ++ +G ++ L D+ I ++ G Sbjct: 6 ILIADDEARMRKLVADFLKKEGYAIIEAADGRQALDLFYGNN-DIDLIILDVMMPGYDGW 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R IR SQVP+I ++ L FD G D+ + KP + + AR+ A+ RR++ Sbjct: 65 TVCREIRKSSQVPIIMLTARGEESDELFGFDLGADEYIAKPFSLKILAARIQALLRRVQN 124 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + + GR V GE L +E +L YL N G+ +++ QI +A++ + Sbjct: 125 NRTVRSFDGLEIDEQGRYVYVDGEPVDLSPKEFELLLYLTENAGRALSREQILNAVWD-Y 183 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 D + V++HI KLR KL K + + R LGY + Sbjct: 184 DYFGDVRTVDTHIKKLRLKLGEKSY--LIQTVRGLGYRFEV 222 >gi|23099274|ref|NP_692740.1| two-component response regulator [Oceanobacillus iheyensis HTE831] gi|22777503|dbj|BAC13775.1| two-component response regulator [Oceanobacillus iheyensis HTE831] Length = 238 Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats. Identities = 34/232 (14%), Positives = 80/232 (34%), Gaps = 14/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ + ++ + + DV ++ + + Sbjct: 7 ILVVDDEDRIRRLIKMYLEKEDFEIDEAADGDVALEKALANDYDVIILDIM--MPEKDGI 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112 E+ + +R P+I ++ + F+ G DD + KP RE Sbjct: 65 EVCKELRKEKDTPVIMLTAKGEESNRVQGFEVGADDYIVKPFSPREAVLRVKALLRRVST 124 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 S N + + D + L +E +L +L K + Q Sbjct: 125 KTYQEVDTSSKNMLVFPHLTIDHDAHRVAADNQEVSLTPKEYELLCFLANAPDKVFNREQ 184 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSIDW 222 + ++ ++ + V++H+ +LR+KL +K + + +GY + Sbjct: 185 LLKEVW-QYEFFGDLRTVDTHVKRLREKLNTVSKEAAKMIVTVWGVGYKFEV 235 >gi|75911110|ref|YP_325406.1| two component transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75704835|gb|ABA24511.1| two component transcriptional regulator, winged helix family [Anabaena variabilis ATCC 29413] Length = 238 Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats. Identities = 34/225 (15%), Positives = 85/225 (37%), Gaps = 8/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V++ +E + L D+ ++ L Sbjct: 6 ILVVDDDPAVRNLIQRFLIKQNYQVEAAEDGKTALSLFEQFNPDLVILDVNL--PDVIGF 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH----HREILARVAAIYR 117 L + +++ + V ++ ++ + F G DD + KP + A + Sbjct: 64 NLCQEMQSRNGVFVLMLTSRADEADKIRGFAKGADDYLTKPFGLGELEVRVGAILRRQRV 123 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 R + + R+ + + PL E +L +L ++ G+ + ++ + Sbjct: 124 VTTAEQKRLTFEKLMIDPVRREVTLNSQAVPLTALEFDLLHFLASHPGRVWRRAELIQEV 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 + ++ ++ VV+ HI ++RKK+ + + + R +GY + Sbjct: 184 WD-YEYVGDQRVVDVHIGQIRKKIEVDASQPALIQTVRGVGYKFE 227 >gi|116670002|ref|YP_830935.1| two component transcriptional regulator [Arthrobacter sp. FB24] gi|116610111|gb|ABK02835.1| two component transcriptional regulator, winged helix family [Arthrobacter sp. FB24] Length = 247 Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats. Identities = 37/224 (16%), Positives = 82/224 (36%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + G ++ L + D+ ++ L G + Sbjct: 18 ILLVEDEQTIAGVVRDYLVQAGFQVDLAADGFTALRLAAERHPDLVLLDRML--PGLDGV 75 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118 E+ R +R VP+I ++ + + + G DD + KP RE + V + Sbjct: 76 EVCRRLRQTMSVPVIMLTALGTEDDRILGLEVGADDYITKPFSPRELVLRVRSVLRRSVQ 135 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + R G L RE +L + + + ++ ++ A++ Sbjct: 136 EFSPEPAVQVAGFELNPAARTVTHHGSPLALTIREFDLLAFFLRRPNQVFSREELIRAVW 195 Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 G + + V H+ +LR+K+ + + + +GY +D Sbjct: 196 GWD--FGDLSTVTVHVRRLREKIEADPTRPALLKTVWGVGYRLD 237 >gi|296332101|ref|ZP_06874565.1| two-component response regulator [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675504|ref|YP_003867176.1| two-component response regulator [Bacillus subtilis subsp. spizizenii str. W23] gi|296150872|gb|EFG91757.1| two-component response regulator [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413748|gb|ADM38867.1| two-component response regulator [Bacillus subtilis subsp. spizizenii str. W23] Length = 240 Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats. Identities = 47/234 (20%), Positives = 97/234 (41%), Gaps = 16/234 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + G + + E + + D+ ++ L + Sbjct: 5 ILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVML--PKLDGI 62 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ + +R P++ ++ + + G DD + KP RE+ ARV AI RR + Sbjct: 63 EVCKQLRQQKLMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRRSE 122 Query: 121 VSNNRAETGPI-----------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 ++ +E ++ D + + L +E +L YL ++G+ + Sbjct: 123 MAAPSSEMKNDEIEGQIVIGDLKILPDHYEAYFKENQLELTPKEFELLLYLGRHKGRVLT 182 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDW 222 + + SA++ +D A + +V+ HIS LR K+ N + + R LGY ++ Sbjct: 183 RDLLLSAVW-NYDFAGDTRIVDVHISHLRDKIENNTKKPIYIKTIRGLGYKLEE 235 >gi|228996687|ref|ZP_04156324.1| Transcriptional regulatory protein srrA [Bacillus mycoides Rock3-17] gi|228763006|gb|EEM11916.1| Transcriptional regulatory protein srrA [Bacillus mycoides Rock3-17] Length = 247 Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats. Identities = 34/232 (14%), Positives = 87/232 (37%), Gaps = 14/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ + +++ ++ + D+ ++ G+ + Sbjct: 16 ILIVDDEDRIRRLLKMYLEREQYTIDEADNGDTALEKALQNDYDLILLDIM--MPGKDGI 73 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112 E+ + IR P+I ++ + F+ G DD + KP RE + Sbjct: 74 EVCKGIREKKATPIIMLTAKGEEVNRVQGFEVGSDDYIVKPFSPREVVLRVKAVLRRSVT 133 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + + + + + +D G+ L +E +L +L K + Q Sbjct: 134 TTFFTQDTTTKDIIVFPHLTIDNDAHRVTADGDEVNLTPKEYELLLFLAKAPDKVFDREQ 193 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKL--GFDPVDSKRFLGYSIDW 222 + ++ ++ + V++H+ +LR+KL K + + +GY + Sbjct: 194 LLKEVW-QYEFFGDLRTVDTHVKRLREKLSKKSADAAKMIVTVWGVGYKFEV 244 >gi|317154759|ref|YP_004122807.1| response regulator receiver [Desulfovibrio aespoeensis Aspo-2] gi|316945010|gb|ADU64061.1| response regulator receiver [Desulfovibrio aespoeensis Aspo-2] Length = 228 Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats. Identities = 41/226 (18%), Positives = 87/226 (38%), Gaps = 12/226 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++ G + L + + D+ ++ G L Sbjct: 6 ILVVEDHKDTRELLKYNLTAAGFDVAAAEDGASGLALAEAFKPDIVLLDLM--MPGMDGL 63 Query: 62 ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAA 114 E+ R I+ + S++P+I ++ + + G DD + KP R I A + Sbjct: 64 EVCRQIKGNSSLSRIPVIMLTAKGEEIDKIVGLELGADDYIVKPFSPRELVLRIKAVLRR 123 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 R + E +R+ + V GE L E ++L L++ GK + + Sbjct: 124 AGGREPKAPKAWEREGLRIDFEAHQITVDGEEATLTATEFKLLTVLISGSGKVQTRDNLL 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ V++H+ +LR+KL + +++ R +GY Sbjct: 184 DTVWDTH-FEGYSRTVDTHVRRLRQKLGPY--AEWIETVRGVGYRF 226 >gi|86606944|ref|YP_475707.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab] gi|86555486|gb|ABD00444.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab] Length = 239 Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats. Identities = 37/226 (16%), Positives = 82/226 (36%), Gaps = 9/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD + G S+E + + + + ++ L Sbjct: 4 ILIIDDDPSICALLKRYLQRQGYSVEVATTGAEGLQQLRAFQPGLVILDLNL--PDVSGY 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-----HHREILARVAAIY 116 +L + ++ + V ++ ++ + L F G DD + KP R Sbjct: 62 DLCQQMQKETGVYVLMLTSRVNPADKLQGFQLGADDYLTKPFSLPELQARVQAILRRGRT 121 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 R S + + R+ L E +L + + G+ ++++ Sbjct: 122 RTETGSAPVLTFPSLVIDPTTREVIRDRRPINLTALEFDLLYAMARHPGRVWRRSELIQE 181 Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 ++ F+ +E VV+ HI ++RKKL + + + + R +GY + Sbjct: 182 VWD-FNHEGDERVVDVHIGQIRKKLETDTSQPELIRTVRGVGYKFE 226 >gi|51893145|ref|YP_075836.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] gi|51856834|dbj|BAD40992.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] Length = 229 Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats. Identities = 50/226 (22%), Positives = 98/226 (43%), Gaps = 9/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + G +G + + + D+ ++ L G L Sbjct: 4 ILVVDDEPGLVKGLRLSLEQEGFQVTTASDGREALSKFRAGDFDLIVLDLML--PGVDGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R +RA P+I ++ + + G DD + KP + RE++AR+ A+ RR + Sbjct: 62 TICREVRAAGMTPIIMLTAKADDIDKILGLELGADDYITKPFNTRELIARIRAVLRRAEA 121 Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 ++ + G + V R EV G L RE +LE L + G + ++ Sbjct: 122 ASRQDRAGRLVVGDLVLHPRQRRAEVAGRPLELTAREYDLLELLARHPGVVYTRQELLDL 181 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221 ++G +D A +E V+ H+ ++R+KL + +K +GY ++ Sbjct: 182 VWG-YDFAGDERTVDVHVRRIREKLEEDPSRPRYLRTKWGVGYYLE 226 >gi|295837513|ref|ZP_06824446.1| DNA-binding response regulator [Streptomyces sp. SPB74] gi|295826557|gb|EFG64921.1| DNA-binding response regulator [Streptomyces sp. SPB74] Length = 244 Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 89/228 (39%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V++ +G +E ++ D+ ++ G L Sbjct: 15 ILVVDDEPAVREALRRSLVFEGYGVEVAADGHEALRQAAATPPDLVVLDI--QMPGMDGL 72 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL--------ARV 112 R +RA S VP++ ++ ++ + D+G DD + KP E+ Sbjct: 73 TAARRLRATGSTVPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSS 132 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 A+ + G +R+ R+ G L R E +LE +A+ + + + Q Sbjct: 133 YAVAEQAADDEETLSFGDLRMNLATREVTRGGRAVELTRTEFTLLEMFLAHPRQVLTREQ 192 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I ++G FD N ++ ++ LR+K V + R +GY + Sbjct: 193 ILKTVWG-FDFEPSSNSLDVYVMYLRRKTEAGGEPRLVHTVRGVGYVL 239 >gi|317481983|ref|ZP_07941008.1| response regulator receiver domain-containing protein [Bifidobacterium sp. 12_1_47BFAA] gi|316916550|gb|EFV37947.1| response regulator receiver domain-containing protein [Bifidobacterium sp. 12_1_47BFAA] Length = 296 Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats. Identities = 56/230 (24%), Positives = 101/230 (43%), Gaps = 13/230 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++ + +G + + E L + D+ ++ L G Sbjct: 66 ILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGGIDLVLLDLML--PGIDGT 123 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 L R IR S+VP+I ++ + + + G DD V KP RE+LAR+ A+ RR + Sbjct: 124 ALCRRIREQSRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVMRRNQA 183 Query: 121 --------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + G I + V+GE P +E +LEYLM N+G+ + + Q Sbjct: 184 TAQASGTVDDDIPLVCGDIAMQVGQHQVTVRGETVFFPLKEFELLEYLMQNKGRVMTRHQ 243 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221 + I+G D + ++ H+ ++R K+ + + R LGY ID Sbjct: 244 LIDRIWG-SDYVGDTKTLDVHVKRVRSKIEEDPAHPKYLTTVRGLGYKID 292 >gi|289578186|ref|YP_003476813.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter italicus Ab9] gi|289527899|gb|ADD02251.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter italicus Ab9] Length = 231 Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats. Identities = 41/225 (18%), Positives = 87/225 (38%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + +G S+ + + ++ ++ L G Sbjct: 5 ILVVDDEIKILEVVKSYLEREGFSVITETNGNNVLDTFKKEKPNLVILDLML--PGISGE 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116 EL + IR S VP++ ++ ++ F G DD + KP RE++ R Sbjct: 63 ELCKRIRQFSNVPILMLTAKVQESDKINGFSIGADDYLTKPFSPRELVMRVKAILRRTTD 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + V + +G V L E +IL++L+ N + + ++ Sbjct: 123 DVPLAEVISFNNDDLVVDFKAHTVKKKGVVVNLTPNEFKILKFLIHNPNRVFTREELIEK 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 + G FD + +++HI LR+K+ + + + +GY Sbjct: 183 VMG-FDYEGYDRTIDAHIKNLRQKIEDDTKNPMYIKTVYGVGYKF 226 >gi|146297552|ref|YP_001181323.1| two component transcriptional regulator [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145411128|gb|ABP68132.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 230 Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats. Identities = 44/227 (19%), Positives = 97/227 (42%), Gaps = 8/227 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + E + D+ ++ L Sbjct: 6 ILVVDDEKPIVDIIKFNLEKEGYKITTSYDGEDALNKIKNENFDMVLLDVML--PKMDGF 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + +R S+VP+I I+ + + G DD + KP RE++AR+ A RR Sbjct: 64 TVCKKVREFSEVPIIMITAKADEVDKVLGLELGADDYITKPFGIRELIARIRANLRRTSQ 123 Query: 122 SNNRAETGPI----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 +N + + + + G+V L RE +L++LM+ +G+ ++ ++ + Sbjct: 124 QSNSDGKVLKAGKLTLNPETFEVKKDGKVIELTVREYELLKFLMSQKGQVFSREELLEKV 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223 + ++ + V+ + +LR+K+ + + +KR +GY + N Sbjct: 184 WD-YEYYGDVRTVDVTVRRLREKIEDNPSEPVFILTKRGIGYYFNPN 229 >gi|221310852|ref|ZP_03592699.1| two-component response regulator [Bacillus subtilis subsp. subtilis str. 168] gi|221315178|ref|ZP_03596983.1| two-component response regulator [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221320095|ref|ZP_03601389.1| two-component response regulator [Bacillus subtilis subsp. subtilis str. JH642] gi|221324377|ref|ZP_03605671.1| two-component response regulator [Bacillus subtilis subsp. subtilis str. SMY] gi|255767672|ref|NP_390789.2| two-component response regulator [Bacillus subtilis subsp. subtilis str. 168] gi|251757501|sp|P13792|PHOP_BACSU RecName: Full=Alkaline phosphatase synthesis transcriptional regulatory protein phoP gi|40056|emb|CAA47908.1| phoP [Bacillus subtilis] gi|225185300|emb|CAB14871.2| two-component response regulator [Bacillus subtilis subsp. subtilis str. 168] gi|291485344|dbj|BAI86419.1| two-component response regulator [Bacillus subtilis subsp. natto BEST195] Length = 240 Score = 159 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 47/234 (20%), Positives = 96/234 (41%), Gaps = 16/234 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + G + + E + + D+ ++ L + Sbjct: 5 ILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVML--PKLDGI 62 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ + +R P++ ++ + + G DD + KP RE+ ARV AI RR + Sbjct: 63 EVCKQLRQQKLMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRRSE 122 Query: 121 VSNNRAETGPIRV-----------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 ++ +E + D + + L +E +L YL ++G+ + Sbjct: 123 IAAPSSEMKNDEMEGQIVIGDLKILPDHYEAYFKESQLELTPKEFELLLYLGRHKGRVLT 182 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDW 222 + + SA++ +D A + +V+ HIS LR K+ N + + R LGY ++ Sbjct: 183 RDLLLSAVW-NYDFAGDTRIVDVHISHLRDKIENNTKKPIYIKTIRGLGYKLEE 235 >gi|309789569|ref|ZP_07684150.1| response regulator receiver [Oscillochloris trichoides DG6] gi|308228305|gb|EFO81952.1| response regulator receiver [Oscillochloris trichoides DG6] Length = 229 Score = 159 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 44/223 (19%), Positives = 79/223 (35%), Gaps = 8/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A V+ + G + + + D+ ++ Sbjct: 6 ILVVDDHANVRALLKDYLSEHGFRVITAADGAEALAVAGREQPDLILLDVM--MPKLDGF 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + R P+I ++ + + + G DD V KP E++ARV A+ RR Sbjct: 64 QFMQTFRKRHNTPVIMLTARIAESDKVVGLELGADDYVTKPFGMHELVARVRAVLRRSSP 123 Query: 122 SNNRAETGPIRVF----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + R V L E +L LM G+ ++ Q+ + Sbjct: 124 DALNPDALLRVGDLTLNRATRVVRVGERDVSLTPSEFALLAALMEAPGRVFSREQLLERL 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219 G D E ++ HI LRKKL + V++ +GY Sbjct: 184 QGN-DYEGVERTIDVHIRNLRKKLEPDPTQPRYVETVFGVGYR 225 >gi|300785656|ref|YP_003765947.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|7339508|emb|CAB82844.1| putative response regulator [Amycolatopsis mediterranei] gi|14530100|emb|CAC42209.1| rA protein [Amycolatopsis mediterranei] gi|299795170|gb|ADJ45545.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 224 Score = 159 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 50/221 (22%), Positives = 91/221 (41%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D LV+ G G G + + E SA ++ ++ L G Sbjct: 4 ILLIEDDPLVRRGLELALGRHGHDVRTAETGEDGLRQFRSAPPELVVLDLML--PGIDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120 E+ R IRA VP+I ++ + +G DD V KP + AR+ A+ R Sbjct: 62 EVCRGIRAAGPVPVIMLTARGDDFDVVGGLAAGADDYVVKPARPTVLDARIRAVLRRAAS 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + +R+ + +GE L E R+L L G+ +++ Q+ ++ Sbjct: 122 SPDGVRVHRDLRIDTTSLTVSSRGEPVSLTPTELRLLLTLSRAPGRVLSRQQLLEEVW-E 180 Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 D + +V++ + +LR K+ + + V + R GY Sbjct: 181 HDYLGDSRLVDNCVQRLRAKIEADPAAPEYVQTVRGFGYRF 221 >gi|147668884|ref|YP_001213702.1| two component transcriptional regulator [Dehalococcoides sp. BAV1] gi|146269832|gb|ABQ16824.1| two component transcriptional regulator, winged helix family [Dehalococcoides sp. BAV1] Length = 230 Score = 159 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 43/228 (18%), Positives = 92/228 (40%), Gaps = 10/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A +++ +G LE + + + ++ + G Sbjct: 6 ILVVEDDATLRELLCYNLAKEGYQLECAEDGLKALSVYRLFKPALVILDVMI--PGIDGF 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH------REILARVAAI 115 EL R+IRA S VP++ ++ S ++ ++G DD ++KP L R + + Sbjct: 64 ELCRLIRAESSVPILMLTARSSEADKVNGLEAGADDYLSKPFGMKELLARMRALLRRSQM 123 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + G + +F + G +E + +L+ NR + ++ Q+ Sbjct: 124 LNSQADIAGGLKIGDLEIFIERHLVIRNGVALDFSPKEFDLFSFLVQNRYRVFSREQLLE 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 ++G +D V+ HIS LR+K+ + + + R GY + Sbjct: 184 KVWG-YDYPGGTRTVDVHISWLRQKIEVDPSKPRHLITVRGTGYKFEE 230 >gi|312622321|ref|YP_004023934.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor kronotskyensis 2002] gi|312202788|gb|ADQ46115.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor kronotskyensis 2002] Length = 223 Score = 159 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 36/223 (16%), Positives = 92/223 (41%), Gaps = 6/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD + + +G + ++ + + ++ ++ L + Sbjct: 3 ILVIDDDVKICEVIKLYLEKEGFEVVIAHNGMDGIAMFKNEMPNLVILDIML--PKKDGY 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 E+ R +R S +P+I ++ + + G DD + KP +E++AR+ + Sbjct: 61 EVCRELRKISNIPIIMLTAKGETFDKVLGLELGADDYIVKPFDPKELIARIKAVLRRTQG 120 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + V + +++ +V +P +E +L +L ++ K + Q+ I+ Sbjct: 121 EVNDEKVVVYPNLTVNLTTYEVKLEDKVIDMPPKEIELLYFLASHPNKVFTREQLLDHIW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 G ++ + V+ HI ++R+K+ + + +GY + Sbjct: 181 G-YNFVGDTRTVDVHIKRIREKIEKDKYPWKIKTVWGVGYKFE 222 >gi|255282430|ref|ZP_05346985.1| DNA-binding response regulator VicR [Bryantella formatexigens DSM 14469] gi|255267014|gb|EET60219.1| DNA-binding response regulator VicR [Bryantella formatexigens DSM 14469] Length = 229 Score = 159 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 48/225 (21%), Positives = 93/225 (41%), Gaps = 10/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD L+ G DG+ ++ E + + D+ ++ L L Sbjct: 6 LVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEALQMAKNKEYDMVLLDLML--PKVDGLS 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + IR S VP++ ++ + + G DD + KP + E+ AR+ AI RR Sbjct: 64 VCQQIREFSNVPIVMLTAKGDDMDKIMGLEYGADDYITKPFNILEVKARIKAIMRRTGKP 123 Query: 123 NNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + R + G+ L +E +LE L+ N GK ++ + Sbjct: 124 AAAESRSRVVEAGDLVLDCESRRVTIAGKEINLTAKEFDVLELLVFNPGKVYSRENLLDT 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++G ++ + V+ HI +LR+K+ V +K +GY Sbjct: 184 VWG-YEYPGDVRTVDVHIRRLREKIEENPSEPKYVHTKWGVGYYF 227 >gi|254415706|ref|ZP_05029464.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] gi|196177412|gb|EDX72418.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] Length = 236 Score = 159 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 39/234 (16%), Positives = 83/234 (35%), Gaps = 15/234 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A + +G + S + DV ++ L G L Sbjct: 3 ILIVEDEAEIAKLIQLTLEREGFTCYSCRDGLAAIQAFQSQQPDVIILDLML--PGLDGL 60 Query: 62 ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILA 110 E+ IR ++ ++ + +G DD + KP E + Sbjct: 61 EVCARIRQKPGPKDPYILMLTAKGEEIDRVIGLSTGADDYLVKPFSPTELVARVRALLRR 120 Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + + L + + + + E L E +L + G+ + Sbjct: 121 SLRHSGQSLVYRTQHFTVDVDQHTASRQLESGESEPLDLTTLEFNLLATFTSQPGRVWNR 180 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223 TQ+ ++G D +E VV++H+++LRKK+ + + + +GY + N Sbjct: 181 TQLIDKLWGN-DFFGDERVVDTHVARLRKKIEPDPSNPTFIKTVIGVGYKFEDN 233 >gi|219669756|ref|YP_002460191.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219540016|gb|ACL21755.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 230 Score = 159 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 45/224 (20%), Positives = 98/224 (43%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD ++ +G ++ + L+ ++D + + L+ Sbjct: 4 ILVIDDEERIRHLVRMYLEREGYEVDEAGNGREA--LEKFQKQDYALLIVDLMMPEIDGW 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYR 117 ++ R +R S +P+I ++ + F+ G DD + KP +E++ARV Sbjct: 62 KVCRDVRERSDIPIIMLTARGEEFDRVLGFELGADDYLVKPFSTKELVARVKALLRRSRG 121 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 +S++ GP+++ D + E P RE +L +L N + ++ Q+ + Sbjct: 122 NTAISSSDLLFGPLKIEKDKHRVSIDDEQIPFTPREFELLYFLAKNPSRVFSREQLMETV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +G +D + V++H+ K+R+KL + + + +GY D Sbjct: 182 WG-YDFYGDARTVDTHVKKIREKLADPKVRSMLATVWGVGYKFD 224 >gi|2293270|gb|AAC00348.1| signal transduction regulator [Bacillus subtilis] Length = 240 Score = 159 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 47/234 (20%), Positives = 95/234 (40%), Gaps = 16/234 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + G + + E + + D+ ++ L + Sbjct: 5 ILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVML--PKLDGI 62 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ + +R P++ ++ + + G DD + KP RE+ ARV AI RR + Sbjct: 63 EVCKQLRQQKLMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRRSE 122 Query: 121 VSNNRAETGPIRV-----------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 + +E + D + + L +E +L YL ++G+ + Sbjct: 123 IRAPSSEMKNDEMEGQIVIGDLKILPDHYEAYFKESQLELTPKEFELLLYLGRHKGRVLT 182 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDW 222 + + SA++ +D A + +V+ HIS LR K+ N + + R LGY ++ Sbjct: 183 RDLLLSAVW-NYDFAGDTRIVDVHISHLRDKIENNTKKPIYIKTIRGLGYKLEE 235 >gi|258652754|ref|YP_003201910.1| winged helix family two component transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258555979|gb|ACV78921.1| two component transcriptional regulator, winged helix family [Nakamurella multipartita DSM 44233] Length = 229 Score = 159 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 50/223 (22%), Positives = 84/223 (37%), Gaps = 8/223 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD ++ DG + E L D+ ++ L G LE Sbjct: 5 LVVDDEPHIRTVLRGYLEADGFEVVDAADGETAVDLVRRDPPDLVLLDVML--PGIDGLE 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYRR 118 + R +RA S +I ++ L G DD V KP RE+ ARV Sbjct: 63 VLRRLRAVSDAYVILVTARAEEVDKLVGLAVGADDYVTKPFSPREVTARVKAVLRRDRGG 122 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + + GR+ G L E +L L G+ ++ Q+ ++ Sbjct: 123 RTGEDVVLRFRGLSIDLAGREVHADGAPVALSSLEFDLLAALAGAPGRVFSRAQLLERVW 182 Query: 179 GLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220 G +D +E VV+ HI LR +L + + + R +GY Sbjct: 183 G-YDFYGDERVVDVHIRSLRSRLGDPAADPRLIATVRGVGYKF 224 >gi|182680313|ref|YP_001834459.1| two component transcriptional regulator [Beijerinckia indica subsp. indica ATCC 9039] gi|182636196|gb|ACB96970.1| two component transcriptional regulator, winged helix family [Beijerinckia indica subsp. indica ATCC 9039] Length = 252 Score = 159 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 53/226 (23%), Positives = 93/226 (41%), Gaps = 8/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D A + +G +E + E + D+ ++ L G L Sbjct: 26 ILLVEDEAALSTLLTYNLEAEGFEVESLECGDEAEARLDESLPDLVLLDWML--PGVSGL 83 Query: 62 ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IY 116 E+ R IRA + P+I ++ + +G DD + KP E++ARV A Sbjct: 84 EICRRIRAREKTRALPIIMLTARGEESEKIRGLATGADDYIVKPFSVPELMARVRALLRR 143 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 R G + + + L E R+L++LM G+ ++ Q+ Sbjct: 144 SRPDRITGLLTAGDLSLDRENWRVHRGERHVHLGPTEFRLLDHLMGRPGRVFSRAQLLDG 203 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 ++G E ++E V+ H+ +LRK L DP+ + R GYS D Sbjct: 204 VWGEAAE-IDERTVDVHVGRLRKALSIGEEQDPIRTVRGAGYSFDE 248 >gi|301053513|ref|YP_003791724.1| multidrug resistance ABC transporter ATP-binding protein/permease [Bacillus anthracis CI] gi|300375682|gb|ADK04586.1| multidrug resistance ABC transporter, ATP-binding and permease protein [Bacillus cereus biovar anthracis str. CI] Length = 841 Score = 159 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 35/222 (15%), Positives = 93/222 (41%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ +G + + D+ ++ Sbjct: 621 ILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINEVKVDMVILDIM--MPNMDGF 678 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ +R + +P++ ++ + F G DD + KP E++ RV + +R ++ Sbjct: 679 DVCFELRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKVLLKRYQI 738 Query: 122 SNNRAETGPIR-VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + +++ + + + + LP +E +L L + G+ ++ Q+ ++G Sbjct: 739 TVSQSIQVGTVLLNRKTFEVAIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG- 797 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D E ++ HI++LR+K + + + + R LGY ++ Sbjct: 798 YDFEGNERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLEV 839 >gi|297544467|ref|YP_003676769.1| winged helix family two component transcriptional regulator [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842242|gb|ADH60758.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 231 Score = 159 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 41/225 (18%), Positives = 87/225 (38%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + +G S+ + + ++ ++ L G Sbjct: 5 ILVVDDEIKILEVVKSYLEREGFSVITETNGNNVLDTFKKEKPNLVILDLML--PGISGE 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116 EL + IR S VP++ ++ ++ F G DD + KP RE++ R Sbjct: 63 ELCKRIRQFSNVPILMLTAKVQESDKINGFSIGADDYLTKPFSPRELVMRVKAILRRTTD 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + V + +G V L E +IL++L+ N + + ++ Sbjct: 123 DVPLAEVISFNNDDLVVDFKAHTVKKKGVVVNLTPNEFKILKFLIRNPNRVFTREELIEK 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 + G FD + +++HI LR+K+ + + + +GY Sbjct: 183 VMG-FDYEGYDRTIDAHIKNLRQKIEDDTKNPMYIKTVYGVGYKF 226 >gi|156742456|ref|YP_001432585.1| two component transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156233784|gb|ABU58567.1| two component transcriptional regulator, winged helix family [Roseiflexus castenholzii DSM 13941] Length = 224 Score = 159 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 44/221 (19%), Positives = 96/221 (43%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A + +G ++E + D+ ++ L G L Sbjct: 4 ILIVEDEAEIAGYLRRGLTFEGYNVEIAADGRQALEIARERPPDLVVLDLML--PGIDGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119 E+ R +RA S VP+I ++ ++ + ++G DD + KP E+ RV R+ Sbjct: 62 EVARRLRAASDVPIIMLTARDAVPDRVAGLEAGADDYLIKPFAFEELLARIRVQLRRRQR 121 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + GP+ + + + L +E +LE M + + + + I+ ++G Sbjct: 122 EDTATVLRYGPLTMDLTAHEVTIGDRRVDLTAKEYDLLELFMRHPQQVMTRDVIYDRVWG 181 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ E N++E ++ LR+KL + + + R +GY + Sbjct: 182 -YNFGGESNIIEVYVRYLRQKLEARGEPRLIHTVRGVGYIL 221 >gi|219848093|ref|YP_002462526.1| winged helix family two component transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219542352|gb|ACL24090.1| two component transcriptional regulator, winged helix family [Chloroflexus aggregans DSM 9485] Length = 234 Score = 159 bits (401), Expect = 4e-37, Method: Composition-based stats. Identities = 43/222 (19%), Positives = 93/222 (41%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A +++ A G + + + D+ ++ L G + Sbjct: 5 ILVVDDEASIRNVAKAYLEHAGYRVLCATTGPEGLQMALDEEPDLIVLDLML--PGMDGM 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 E+ +R S V ++ ++ + G DD + KP RE++ARV R Sbjct: 63 EITARLREKSDVFILMLTARSDEIDRVAGLRVGADDYLTKPFSPRELVARVEAILRRRRG 122 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 V ++ + + D R+ G++ L E +L L N + +++ + ++ Sbjct: 123 KPVKSSVMRFTHVEIDPDAREARAAGQLLELTPTEFDLLIALARNHNRVLSREDLIEKVW 182 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G D + VV+ ++S++R+K+ G + + + R +GY Sbjct: 183 GA-DFYGTDRVVDVYVSQVRRKIEALTGENLIRTARGVGYRF 223 >gi|160880093|ref|YP_001559061.1| two component transcriptional regulator [Clostridium phytofermentans ISDg] gi|160428759|gb|ABX42322.1| two component transcriptional regulator, winged helix family [Clostridium phytofermentans ISDg] Length = 229 Score = 159 bits (401), Expect = 4e-37, Method: Composition-based stats. Identities = 44/225 (19%), Positives = 90/225 (40%), Gaps = 10/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD L+ G DG+ ++ E DV ++ L E Sbjct: 6 LVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEALVFAKQKEYDVILLDVML--PRMNGFE 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH------HREILARVAAIY 116 + + IR S +P+I ++ + + G DD + KP + + + R Sbjct: 64 VCQQIREFSNMPVIMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRNTRK 123 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 ++ G +++ S+ R + + L +E +LE L+ N K ++ + + Sbjct: 124 ASEAEASKTIVFGDLKIDSESRRVFISEKEINLTAKEFDVLELLVLNPNKVYSRENLLNI 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++G +D + V+ HI +LR+K+ V +K +GY Sbjct: 184 VWG-YDYPGDVRTVDVHIRRLREKIEENPSEPKYVHTKWGVGYYF 227 >gi|89893852|ref|YP_517339.1| hypothetical protein DSY1106 [Desulfitobacterium hafniense Y51] gi|219668228|ref|YP_002458663.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|89333300|dbj|BAE82895.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219538488|gb|ACL20227.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 237 Score = 159 bits (401), Expect = 4e-37, Method: Composition-based stats. Identities = 43/222 (19%), Positives = 87/222 (39%), Gaps = 8/222 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D A ++ G + S E L + D+ ++ L G LE Sbjct: 9 LVVEDEASIRRFITLNLEMAGYEVGEAESGEDALALLTEFLPDLVVLDLML--PGIDGLE 66 Query: 63 LPRIIRAHSQVP-LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + IR P +I ++ + + G DD + KP + E++AR+ A+ RR Sbjct: 67 VCQHIRETMPDPLIIILTAKGQDTDKIMGLELGADDYMVKPFNPFELIARIKAMLRRRDR 126 Query: 122 SNNRAETGPI---RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + + L E +L+ M N GK + + ++ + I+ Sbjct: 127 YEAGRTGYTYGSLHLDTAANKLLKNNQEVELTPTEYSLLKMFMENPGKALRREEMLNGIW 186 Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYS 219 G D + ++ HI +LR+K+ + + + GY Sbjct: 187 GE-DYFGDTKTLDVHIRRLREKIEDNPSDPRYIKTIWGSGYR 227 >gi|313905040|ref|ZP_07838410.1| two component transcriptional regulator, winged helix family [Eubacterium cellulosolvens 6] gi|313470110|gb|EFR65442.1| two component transcriptional regulator, winged helix family [Eubacterium cellulosolvens 6] Length = 229 Score = 159 bits (401), Expect = 4e-37, Method: Composition-based stats. Identities = 48/225 (21%), Positives = 92/225 (40%), Gaps = 10/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD L+ G DG + E + D+ ++ L L+ Sbjct: 6 LVVDDEKLIVKGIRFSLEQDGYEVSCAYDGEEALNMAKENTYDIILLDLML--PKMNGLD 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + IR S VP+I ++ + + G DD + KP + E+ AR+ AI RR + Sbjct: 64 VCQQIREFSSVPIIMLTAKGEDMDKIMGLEYGADDYITKPFNILEVKARIKAILRRARKP 123 Query: 123 NNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 E + D R + L +E +L+ L+ N K ++ + + Sbjct: 124 EKAEEKTKVVQAGDLKLDCDSRRVFIGDGEVNLTAKEFDVLQLLVFNPNKVYSRENLLNI 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++G ++ + V+ HI +LR+K+ + V +K +GY Sbjct: 184 VWG-YEYPGDVRTVDVHIRRLREKIEDNPSEPRYVHTKWGVGYYF 227 >gi|159899318|ref|YP_001545565.1| two component transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159892357|gb|ABX05437.1| two component transcriptional regulator, winged helix family [Herpetosiphon aurantiacus ATCC 23779] Length = 236 Score = 159 bits (401), Expect = 4e-37, Method: Composition-based stats. Identities = 42/222 (18%), Positives = 91/222 (40%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G ++E + D+ ++ L G Sbjct: 10 ILVVEDEKEIAGYLRRGLAFEGFTVEVAHDGPTGIAAARERPADLVILDIML--PGMDGF 67 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118 E+ R +RA S VP+I ++ ++ + +SG DD + KP E + + + Sbjct: 68 EVCRRLRAGSDVPIIMLTAKETVPDRVMGLESGADDYLIKPFAFEELLARIRALLRRHVA 127 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + + + R+ + G L +E +LE M + G+ + + I+ ++ Sbjct: 128 RTEGPVVLQVNGLEMNTASREVTIAGRAVQLTAKEYELLELFMRHPGQVLTRDVIYDRVW 187 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G +D E N++E ++ LR+KL + + R GY + Sbjct: 188 G-YDFGGESNIIEVYVRYLRQKLEESGEGRMLHTVRGAGYIL 228 >gi|123967041|ref|YP_001012122.1| two-component response regulator [Prochlorococcus marinus str. MIT 9515] gi|123201407|gb|ABM73015.1| two-component response regulator [Prochlorococcus marinus str. MIT 9515] Length = 248 Score = 159 bits (401), Expect = 4e-37, Method: Composition-based stats. Identities = 54/231 (23%), Positives = 96/231 (41%), Gaps = 16/231 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V + G + + E D+ ++ L Sbjct: 6 ILVVDDEPAVLKVLVTRLQLAGYQVHQATNGEEALEAFHRESPDLIVLDVML--PKMDGF 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R IRA S VP+I ++ ++ + D G DD ++KP +E+ AR+A I RR+ Sbjct: 64 AVCRRIRAESVVPIIFLTALEAISERVAGLDLGADDYLSKPFSPKELEARIATILRRMGP 123 Query: 122 SNN------------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 S + G + V ++ R GE L E +LE L GK V Sbjct: 124 SITVTETKEVPSGKGVMKFGNLVVDTNRRQVSRAGERISLTYTEFSLLELLFDEPGKVVP 183 Query: 170 KTQIFSAIYG-LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218 + +I ++G A + VV+ ++++LR KL + + + + R +GY Sbjct: 184 RAEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 234 >gi|33862175|ref|NP_893736.1| two-component response regulator [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33634393|emb|CAE20078.1| two-component response regulator [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 248 Score = 159 bits (401), Expect = 4e-37, Method: Composition-based stats. Identities = 54/231 (23%), Positives = 96/231 (41%), Gaps = 16/231 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V + G + + E D+ ++ L Sbjct: 6 ILVVDDEPAVLKVLVTRLQLAGYQVHQATNGEEALEAFHRESPDLIVLDVML--PKMDGF 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R IRA S VP+I ++ ++ + D G DD ++KP +E+ AR+A I RR+ Sbjct: 64 AVCRRIRAESVVPIIFLTALEAISERVAGLDLGADDYLSKPFSPKELEARIATILRRMGP 123 Query: 122 SNN------------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 S + G + V ++ R GE L E +LE L GK V Sbjct: 124 SITVTETKEVPSGKGVMKFGNLVVDTNRRQVSRAGERISLTYTEFSLLELLFDEPGKVVP 183 Query: 170 KTQIFSAIYG-LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218 + +I ++G A + VV+ ++++LR KL + + + + R +GY Sbjct: 184 RAEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 234 >gi|226948317|ref|YP_002803408.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] gi|226841453|gb|ACO84119.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] gi|322805369|emb|CBZ02933.1| two-component response regulator [Clostridium botulinum H04402 065] Length = 233 Score = 159 bits (401), Expect = 4e-37, Method: Composition-based stats. Identities = 44/226 (19%), Positives = 85/226 (37%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D A +G + E L + ++ L Sbjct: 7 ILVVDDEERILDVVKAYLEKEGYEVITAMDGEEAIKLFKEISFHLVILDLML--PKISGE 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL------ARVAAI 115 E+ IR S VP+I ++ + L+ G DD + KP RE++ R A Sbjct: 65 EVCSKIREFSNVPIIMLTAKVEEEDKLEGLSIGADDYLTKPFSVRELVARVKALIRRAYR 124 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + G + V G+V L E ++L L+ N G+ + Q+ Sbjct: 125 GKYPLAEHLILNNGDLEVDIRKMKVLKNGKVVTLTPYEFKVLVSLLTNPGQVFTREQLVE 184 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 +G +D V+++I +R+K+ + + + + +GY Sbjct: 185 QAFG-YDYESFNRTVDTYIKNIRQKIEDNPKAPNYITTVYGVGYRF 229 >gi|317484883|ref|ZP_07943773.1| response regulator receiver domain-containing protein [Bilophila wadsworthia 3_1_6] gi|316923865|gb|EFV45061.1| response regulator receiver domain-containing protein [Bilophila wadsworthia 3_1_6] Length = 228 Score = 159 bits (401), Expect = 4e-37, Method: Composition-based stats. Identities = 45/223 (20%), Positives = 94/223 (42%), Gaps = 10/223 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D +++ +G + + L S + D+ ++ L L Sbjct: 8 ILIVEDEQDIRELLAYNLEKEGYATVQAADGKEGLELARSRKPDLILLDLML--PKMDGL 65 Query: 62 ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--ILARVAAIY 116 + R + S ++P+I ++ + F+ G DD V KP + RE + R Sbjct: 66 AVCRELERDSGTVRIPIIMLTARGEDVDRILGFELGADDYVVKPFNIRELLLRIRAILRR 125 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + SN + V V G+ L E R++E L+ N G+ + ++ +A Sbjct: 126 QVMVESNPVLTRHGVSVDPAAHKVTVLGQDVELTATEFRLIEDLLRNAGRVRTREELLAA 185 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 ++G + V++HI +LR KL + + +++ R +GY Sbjct: 186 VWG-YQFEGYARTVDTHIRRLRNKLGD--AAEIIETVRGVGYR 225 >gi|149182828|ref|ZP_01861289.1| two-component response regulator [Bacillus sp. SG-1] gi|148849443|gb|EDL63632.1| two-component response regulator [Bacillus sp. SG-1] Length = 239 Score = 159 bits (401), Expect = 4e-37, Method: Composition-based stats. Identities = 51/234 (21%), Positives = 98/234 (41%), Gaps = 16/234 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + G S+ + E L D+ ++ L + Sbjct: 5 ILVVDDEQSIVTLLKYNLEQAGYSVITAHDGEEGRDLALEEVPDLMILDLML--PKIDGI 62 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI----- 115 E+ + IR +P++ ++ + + G DD + KP RE++ARV AI Sbjct: 63 EVCKQIRQQKVMIPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVMARVKAILRRSQ 122 Query: 116 ------YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 + + G ++VF + + + L +E +L YL NRG+ + Sbjct: 123 AVIDVAEHLRSEQKDYLQVGDLKVFPEQYEAYFAENLLELTPKEFELLMYLTENRGRVLT 182 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 + Q+ SA++ +D A + +V+ HIS LR+K+ + + R LGY ++ Sbjct: 183 RDQLLSAVW-NYDFAGDTRIVDVHISHLREKIETNTKKPAYIKTIRGLGYKLEE 235 >gi|307265844|ref|ZP_07547394.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter wiegelii Rt8.B1] gi|306919119|gb|EFN49343.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter wiegelii Rt8.B1] Length = 231 Score = 158 bits (400), Expect = 4e-37, Method: Composition-based stats. Identities = 48/225 (21%), Positives = 90/225 (40%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++DD + + + +G S+ + + D+ ++ L G Sbjct: 5 IFVVDDEIKILEVVKSYLEREGFSVITETNGNNVLNTFKKEKPDLVILDLML--PGISGE 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL + IR S VP++ ++ ++ F G DD + KP RE++ RV AI RR Sbjct: 63 ELCKRIRQFSNVPILMLTAKVQESDKINGFSIGADDYLTKPFSPRELVMRVKAILRRTTD 122 Query: 122 SNNRAETGPIRVFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 AE + +G V L E +IL+ L+ N + + ++ Sbjct: 123 DVPLAEVMSFNNDDLVVDLKAHTVKKKGVVVNLTPNEFKILKLLIRNPNRVFTREELIEK 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 + G FD + +++HI LR+K+ + + + +GY Sbjct: 183 VMG-FDYEGYDRTIDAHIKNLRQKIEDDTKNPVYIKTVYGVGYKF 226 >gi|304318074|ref|YP_003853219.1| transcriptional regulator [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302779576|gb|ADL70135.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 232 Score = 158 bits (400), Expect = 4e-37, Method: Composition-based stats. Identities = 43/225 (19%), Positives = 86/225 (38%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD + + +G S E L D+ ++ L Sbjct: 5 ILIIDDEKPIVEILKYNLEKNGYSTIEAYDGEEGLKLAQEKNPDLILLDVML--PKMDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-----ARVAAIY 116 + RI+R P++ ++ + + G DD V KP RE++ + Sbjct: 63 TVLRILRQTMTTPILMLTAKEEEVDKVLGLELGADDYVTKPFSMRELIARVKANLRRSGI 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + +N + + E G L RE +L++L+ANRG ++ + Sbjct: 123 NNGEGMSNVIIVNNLSIDLSKYKVEKNGRPIELTSREFDLLKFLVANRGLIFSREMLLEK 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 ++G ++ + V+ I +LR+K+ + + +KR +GY Sbjct: 183 VWG-YEYFGDVRTVDVTIRRLREKIEDDPANPRYIHTKRGVGYYF 226 >gi|144900225|emb|CAM77089.1| phosphate regulon transcriptional regulatory protein phoB [Magnetospirillum gryphiswaldense MSR-1] Length = 233 Score = 158 bits (400), Expect = 4e-37, Method: Composition-based stats. Identities = 50/224 (22%), Positives = 97/224 (43%), Gaps = 4/224 (1%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEK 59 + ++++D A + +G + E L S + D+ ++ L G + Sbjct: 6 LILIVEDEAALATMLRYNLEKEGYRVCEAGDGEEALTLVSERKPDLMVLDWMLPSLSGIE 65 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 V R A ++P+I ++ + ++G DD + KP E++AR+ A+ RR+ Sbjct: 66 VCRQLRRKPATRELPIIMLTARGEEGDKIRGLNTGADDYMTKPFSLPELMARIRAMLRRV 125 Query: 120 KVSNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + G I + L E R+L++ M + G ++ ++ +A+ Sbjct: 126 QPVPQKGMLEYGDIAMDLAAHRVTRGDRPVHLGPTEFRLLQFFMQHPGNVFSREELLNAV 185 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +G D VE V+ HI +LRK L D + + R GY++D Sbjct: 186 WG-PDIYVEPRTVDVHIRRLRKALNGDNDADIIRTVRAAGYALD 228 >gi|295110582|emb|CBL24535.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus obeum A2-162] Length = 229 Score = 158 bits (400), Expect = 4e-37, Method: Composition-based stats. Identities = 51/225 (22%), Positives = 97/225 (43%), Gaps = 10/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD L+ G DG+ ++ E + + D+ ++ L LE Sbjct: 6 LVVDDEKLIVKGIRFNLEQDGMEVDCAYDGEEAVEKAKANKYDIILLDLML--PKMDGLE 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + IR S VP++ ++ + D G DD + KP + E+ AR+ AI RR + Sbjct: 64 VCQQIREFSNVPIVMLTAKGEDMDKILGLDYGADDYITKPFNILEVKARIKAIMRRARSE 123 Query: 123 NNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + E + R + G+ L +E +LE L+ N K ++ + + Sbjct: 124 HEEKEKAKTIESGDLKLDCESRRVFIAGKEINLTAKEFDVLELLVFNPNKVYSRENLLNI 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++G ++ + V+ HI +LR+K+ N V +K +GY Sbjct: 184 VWG-YEYPGDVRTVDVHIRRLREKIETNPSEPKYVHTKWGVGYYF 227 >gi|83310469|ref|YP_420733.1| response regulator [Magnetospirillum magneticum AMB-1] gi|82945310|dbj|BAE50174.1| Response regulator [Magnetospirillum magneticum AMB-1] Length = 240 Score = 158 bits (400), Expect = 4e-37, Method: Composition-based stats. Identities = 45/222 (20%), Positives = 93/222 (41%), Gaps = 4/222 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61 ++++D A + +G + E + + + D+ ++ L G ++ Sbjct: 15 LVVEDEAALATMLRYNLEKEGYRVAEAADGEEALTVLAERKPDLVLLDWMLPSLSGIEIC 74 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119 R A ++P+I ++ + ++G DD + KP E++ARV A + Sbjct: 75 RQIRRKPATRELPIIMLTARGEEGDKIRGLNTGADDYLTKPFSLPELMARVRALLRRAQP 134 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + G + + G+ L E R+L++ + + G ++ ++ A++G Sbjct: 135 VSQKGQISWGDVSMDLASHRVVRAGKAIHLGPTEFRLLQFFLQHPGTVFSREELLDAVWG 194 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D VE V+ HI +LRK L D + + R GY++D Sbjct: 195 -PDIYVEPRTVDVHIRRLRKALNCDTEADIIRTVRAAGYALD 235 >gi|205373785|ref|ZP_03226587.1| two-component response regulator [Bacillus coahuilensis m4-4] Length = 239 Score = 158 bits (400), Expect = 4e-37, Method: Composition-based stats. Identities = 37/233 (15%), Positives = 85/233 (36%), Gaps = 15/233 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ + ++ + L D ++ + + Sbjct: 7 ILVVDDEDRIRRLLRMYLERENYLIDEASDGNEALELALENSYDCILLDIM--MPEKDGI 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IR P+I ++ + F+ G DD + KP RE++ RV A+ RR Sbjct: 65 EVCQAIREKKATPVIMLTAKGEESNRVQGFEVGTDDYIVKPFSPREVVLRVKALLRRTST 124 Query: 122 SNNRAE----------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 ++ + + D L +E +L +L + K + Sbjct: 125 QSSYIPAEATSKDLLVFPHLTIDHDAHKVLADDMEVNLTPKEYELLHFLAKSPEKVFDRE 184 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG--FDPVDSKRFLGYSIDW 222 Q+ ++ ++ + V++H+ +LR+KL + + +GY + Sbjct: 185 QLLKEVW-HYEFFGDLRTVDTHVKRLREKLNKVSEQSAKMIVTVWGVGYKFEV 236 >gi|266619520|ref|ZP_06112455.1| DNA-binding response regulator ResD [Clostridium hathewayi DSM 13479] gi|288868930|gb|EFD01229.1| DNA-binding response regulator ResD [Clostridium hathewayi DSM 13479] Length = 236 Score = 158 bits (400), Expect = 4e-37, Method: Composition-based stats. Identities = 38/232 (16%), Positives = 86/232 (37%), Gaps = 15/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + N E + + ++ ++ L G Sbjct: 7 ILIVDDDNNIAELISLYLTKECFETIIVNDGEEALRVFPEFKPNLVLLDLML--PGMDGY 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI-----------LA 110 + R +RA S VP+I +S + + + G DD + KP +E+ Sbjct: 65 SVCREMRAQSPVPIIMLSAKGEVFDKVLGLELGADDYMIKPFDSKELVARVKAVLRRYQQ 124 Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + + E + V G +P +E +L +L ++ + + Sbjct: 125 PAVPAAAQTDQQGDYVEYPDLIVNLTNYSVIYMGHSIEMPPKELELLYFLASSPNQVFTR 184 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 Q+ I+G ++ + V+ HI +LR+K+++ + + +GY + Sbjct: 185 EQLLDHIWG-YEYIGDTRTVDVHIKRLREKIKDHASWAL-TTVWGIGYKFEV 234 >gi|217977019|ref|YP_002361166.1| two component transcriptional regulator PhoB, winged helix family [Methylocella silvestris BL2] gi|217502395|gb|ACK49804.1| two component transcriptional regulator PhoB, winged helix family [Methylocella silvestris BL2] Length = 265 Score = 158 bits (400), Expect = 4e-37, Method: Composition-based stats. Identities = 54/226 (23%), Positives = 94/226 (41%), Gaps = 8/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A + +G ++ + E S D+ ++ L G L Sbjct: 30 ILIVEDEAALSMLLAYNLEAEGFVVDRVERGDEAEIRLSETMPDLVILDWML--PGVSGL 87 Query: 62 ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IY 116 E+ R +RA +P+I ++ + G DD V KP E++ARV + Sbjct: 88 EICRRMRAREATRSLPVIMLTARGEESERVRGLSIGADDYVVKPFSVPELMARVRSLLRR 147 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 R G + + G L E R+LE+LM G+ ++ Q+ + Sbjct: 148 ARPDRVAAVLSAGDLELDRQNWRVRRTGRDVHLGPTEFRLLEHLMERPGRVFSRAQLLDS 207 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 ++GL E ++E V+ H+ +LRK L DP+ + R GYS D Sbjct: 208 VWGLSAE-IDERTVDVHVGRLRKALTAPGERDPIRTVRGAGYSFDE 252 >gi|154498462|ref|ZP_02036840.1| hypothetical protein BACCAP_02451 [Bacteroides capillosus ATCC 29799] gi|150272530|gb|EDM99715.1| hypothetical protein BACCAP_02451 [Bacteroides capillosus ATCC 29799] Length = 238 Score = 158 bits (400), Expect = 5e-37, Method: Composition-based stats. Identities = 50/225 (22%), Positives = 93/225 (41%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ G +G +E E L S D+ ++ L Sbjct: 14 ILVVDDEKVLVKGIKFNLESEGYQVETGCDGEEAVELARSGGFDLIILDLM--MPKIDGL 71 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116 + IR S VP+I ++ + F+ G DD + KP + E+ AR A Sbjct: 72 QACMRIREFSNVPIIMLTARSEDADKIIGFECGADDYITKPFNILELKARVRALLRRAGM 131 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 K R G I + +D R L +E ++E LM N G+ ++ + + Sbjct: 132 AAQKEKKARLTAGHIVIDADERSAWKGETPVDLTAKEFDLIELLMRNPGRVYSRENLLNV 191 Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++G ++ A + V+ H+ +LR+KL + + + +K +GY Sbjct: 192 VWG-YEYAGDYRTVDVHVRRLREKLELDPARPEYILTKWGVGYYF 235 >gi|85713650|ref|ZP_01044640.1| phosphate regulon transcriptional regulatory protein phoB [Nitrobacter sp. Nb-311A] gi|85699554|gb|EAQ37421.1| phosphate regulon transcriptional regulatory protein phoB [Nitrobacter sp. Nb-311A] Length = 234 Score = 158 bits (400), Expect = 5e-37, Method: Composition-based stats. Identities = 51/226 (22%), Positives = 94/226 (41%), Gaps = 8/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + G +E + + D+ ++ L G + Sbjct: 5 ILVVEDEEALTTLLRYNLEAAGYEVETVARGDEADTGLKERIPDLLILDWML--PGLSGI 62 Query: 62 ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IY 116 EL R +RA + P+I ++ + +G DD V KP E+LARV + Sbjct: 63 ELCRRLRARPETKELPIIMLTARGEESERVRGLATGADDYVVKPFSVPELLARVKSLLRR 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + G I + D G L E R+LE+ + + G+ ++ Q+ ++ Sbjct: 123 ASPARLASILTFGDIELDRDRHRVARSGRPIDLGPTEYRLLEFFLEHPGRVFSREQLLNS 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 ++G D ++E V+ HI +LRK L DP+ + R GY++D Sbjct: 183 VWGR-DVYIDERTVDVHIGRLRKLLNPDGEADPIRTVRGAGYALDE 227 >gi|153813611|ref|ZP_01966279.1| hypothetical protein RUMOBE_04034 [Ruminococcus obeum ATCC 29174] gi|149830309|gb|EDM85402.1| hypothetical protein RUMOBE_04034 [Ruminococcus obeum ATCC 29174] Length = 229 Score = 158 bits (400), Expect = 5e-37, Method: Composition-based stats. Identities = 51/225 (22%), Positives = 96/225 (42%), Gaps = 10/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD L+ G DG+ ++ E + D+ ++ L LE Sbjct: 6 LVVDDEKLIVKGIRFNLEQDGMEVDCAYDGEEAVEKAKENKYDIILLDLML--PKMDGLE 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + IR S VP++ ++ + D G DD + KP + E+ AR+ AI RR + Sbjct: 64 VCQQIREFSNVPIVMLTAKGEDMDKILGLDYGADDYITKPFNILEVKARIKAIMRRARSE 123 Query: 123 NNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + E + R + G+ L +E +LE L+ N K ++ + + Sbjct: 124 HEEKEKAKTIEAGDLKLDCESRRVFIAGKEINLTAKEFDVLELLVFNPNKVYSRENLLNI 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++G ++ + V+ HI +LR+K+ N V +K +GY Sbjct: 184 VWG-YEYPGDVRTVDVHIRRLREKIEANPSEPKYVHTKWGVGYYF 227 >gi|119485204|ref|ZP_01619589.1| Two component Transcriptional regulator, Winged helix family protein [Lyngbya sp. PCC 8106] gi|119457432|gb|EAW38557.1| Two component Transcriptional regulator, Winged helix family protein [Lyngbya sp. PCC 8106] Length = 237 Score = 158 bits (400), Expect = 5e-37, Method: Composition-based stats. Identities = 39/232 (16%), Positives = 83/232 (35%), Gaps = 15/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + ++G S E + + D+ ++ L G L Sbjct: 3 ILIVEDDGEIAQLIQQTLENEGFSCETARDGWGALEWFQTQQPDLIVLDLML--PGLDGL 60 Query: 62 ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILA 110 E+ IR ++ ++ + +G DD + KP RE + Sbjct: 61 EVCARIRQQPGVKDPYILMLTAKGEEIDRVIGLSTGADDYLVKPFSPRELVARIRALLRR 120 Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + + + + + E L E +L L++ G+ + Sbjct: 121 SLRHGGQSQVYRTPHFTVDLDQHLAYRQLDPQTSEPLDLSPLEFNLLVTLVSYPGRVWNR 180 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 TQ+ ++G D +E VV++HI++LRKK+ + + + GY + Sbjct: 181 TQLIDKLWG-DDFFGDERVVDTHIARLRKKIEPDPTHPQFIKTVVGTGYKFE 231 >gi|289450472|ref|YP_003474684.1| putative alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289185019|gb|ADC91444.1| putative alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 239 Score = 158 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 88/235 (37%), Gaps = 18/235 (7%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + F DG ++ N E +V ++ L G+ E Sbjct: 5 LVVDDDRNICELVQLYFEKDGFQVKTVNDGEMALEEIDKYNPNVVILDLML--PGKDGYE 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL------------- 109 + R IR S VP++ ++ + + G DD ++KP +E++ Sbjct: 63 VCREIRKTSNVPILMLTARGDTLDKIVGLELGADDYISKPFDPKELVVRAKTVLRRTEAA 122 Query: 110 ARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 A + + + G +P +E +L +L ++ + Sbjct: 123 CPEAKAIDNDDHPAEQITHKDLVIDKSSYTVTFHGTRIDMPPKELELLYFLASHPNRVFN 182 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSIDW 222 + Q+ ++G +D E V+ HI ++R+K+ + + + +GY + Sbjct: 183 REQLLGQVWG-YDFYGESRTVDVHIKRVREKIDDIGEHPSWDIKTVWGVGYKFEV 236 >gi|52081822|ref|YP_080613.1| two-component response regulator YvrH [Bacillus licheniformis ATCC 14580] gi|52787209|ref|YP_093038.1| YvrH [Bacillus licheniformis ATCC 14580] gi|319647739|ref|ZP_08001957.1| YvrH protein [Bacillus sp. BT1B_CT2] gi|52005033|gb|AAU24975.1| two-component response regulator YvrH [Bacillus licheniformis ATCC 14580] gi|52349711|gb|AAU42345.1| YvrH [Bacillus licheniformis ATCC 14580] gi|317390080|gb|EFV70889.1| YvrH protein [Bacillus sp. BT1B_CT2] Length = 242 Score = 158 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 44/232 (18%), Positives = 90/232 (38%), Gaps = 13/232 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +++DD + + +G + +S E + + ++ G+ Sbjct: 6 ILIVDDEDAIVQMVKRVLTKEGFSEVLTASSAEEALDIVKKDTVHLILLDVM--MPGQTG 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ IR H+ P+ ++ S L F G DD + KP + E++AR+ A +R Sbjct: 64 FDVSPEIRRHTNAPIFFLTAKTSDLDKLSGFAYGADDYITKPFNPLELIARIKAHLKRTY 123 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGE--------VFPLPRRERRILEYLMANRGKRVAKTQ 172 + A + R + ++L+Y + + ++K Q Sbjct: 124 IHKEVAAASVSSAYEYERFIFHPDFAELIVDGETVSCSAQLLQLLQYFCDHPNRVLSKDQ 183 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223 I+ ++G+ + N V HI KLR+K+ + + + + R LGY N Sbjct: 184 IYEKVWGVPSY-GDSNTVMVHIRKLREKIEKDPSSPEYIVTIRGLGYKFVPN 234 >gi|148238512|ref|YP_001223899.1| two-component system response regulator [Synechococcus sp. WH 7803] gi|147847051|emb|CAK22602.1| Two-component system response regulator [Synechococcus sp. WH 7803] Length = 269 Score = 158 bits (399), Expect = 5e-37, Method: Composition-based stats. Identities = 52/231 (22%), Positives = 95/231 (41%), Gaps = 16/231 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V+ + G + E + S D+ ++ L Sbjct: 26 LLVVDDEPAVRRVLVMRLQLAGYRVVCAEDGEQALEVFSRESPDLVVLDVML--PKLDGF 83 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R +RA S VP+I +S ++ + D G DD + KP +E+ AR+A I RR+ Sbjct: 84 AVCRRLRAESCVPIIFLSALEAISERVAGLDLGADDYLPKPFSPKELEARIATILRRVGR 143 Query: 122 SNNRAETGPIRV------------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 + AE + ++ R E L E +LE L G+ V Sbjct: 144 GSANAEPRELPTGQGVVRVGELVVDTNRRQVTRGSERIALTYTEFSLLELLFREPGRVVP 203 Query: 170 KTQIFSAIYG-LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218 + +I ++G A + VV+ ++++LR KL + + + + R +GY Sbjct: 204 RAEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 254 >gi|239617943|ref|YP_002941265.1| two component transcriptional regulator, winged helix family [Kosmotoga olearia TBF 19.5.1] gi|239506774|gb|ACR80261.1| two component transcriptional regulator, winged helix family [Kosmotoga olearia TBF 19.5.1] Length = 239 Score = 158 bits (399), Expect = 6e-37, Method: Composition-based stats. Identities = 44/230 (19%), Positives = 87/230 (37%), Gaps = 14/230 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD + + +G + E + D+ ++ L G Sbjct: 6 ILVIDDEPSIVELLSFNLKKEGYDVLKAYDAEEALKIVEDNDVDMFIVDIML--PGMDGF 63 Query: 62 ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILAR 111 EL R +R H P+I +S + + G DD + KP R I R Sbjct: 64 ELVRNLRSTEKHRHTPVIFLSAKSEEFDKVLGLELGADDYITKPFSVREALARIRAIFRR 123 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + + + + + + ++ + V+G++ L E +L +L N GK ++ Sbjct: 124 IQQSVQAKEERPKKITARDLEIDTEKYEVRVRGKLVNLTPLEFELLRFLAENEGKVFSRD 183 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220 + ++G +D + V+ HI +LR K+ + + + R GY Sbjct: 184 VLLDKLWG-YDYYGDTRTVDVHIRRLRTKIEEDPSNPKYIITVRGKGYKF 232 >gi|92116259|ref|YP_575988.1| two component transcriptional regulator [Nitrobacter hamburgensis X14] gi|91799153|gb|ABE61528.1| two component transcriptional regulator, winged helix family [Nitrobacter hamburgensis X14] Length = 233 Score = 158 bits (399), Expect = 6e-37, Method: Composition-based stats. Identities = 50/226 (22%), Positives = 93/226 (41%), Gaps = 8/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G +E + + D+ ++ L G + Sbjct: 5 ILVVEDEEALTTLLRYNLDAEGYEVETVARGDEADTWLKERTPDLVVLDWML--PGLSGI 62 Query: 62 ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IY 116 EL R +RA + P+I ++ + +G DD V KP E+LARV Sbjct: 63 ELCRRLRARPETRQLPIIMLTARGEESERVRGLATGADDYVVKPFSVPELLARVKGLLRR 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + G I + D G L E R+LE+ + + G+ ++ Q+ + Sbjct: 123 ASPERLATILSFGDIELDRDKHRVARSGRPIDLGPTEYRLLEFFLEHPGRVFSREQLLDS 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 ++G D ++E V+ HI +LRK + DP+ + R GY++D Sbjct: 183 VWGR-DIYIDERTVDVHIGRLRKLINPGGEPDPIRTVRGAGYALDE 227 >gi|291294434|ref|YP_003505832.1| two component transcriptional regulator, winged helix family [Meiothermus ruber DSM 1279] gi|290469393|gb|ADD26812.1| two component transcriptional regulator, winged helix family [Meiothermus ruber DSM 1279] Length = 234 Score = 158 bits (399), Expect = 6e-37, Method: Composition-based stats. Identities = 54/221 (24%), Positives = 92/221 (41%), Gaps = 7/221 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + + +G E + L +AR D+ ++ L LE Sbjct: 15 LVVEDEPEIAEILEGYLRREGFRTERASDGRQALNLVRAARPDLVLLDIML--PEMDGLE 72 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRRL 119 + R IR+ P+I ++ L + G DD V KP RE++ARV Sbjct: 73 VLRRIRSSGHTPVILVTARTEDLDKLLGLELGADDYVTKPFSPREVVARVKAVLRRVVLA 132 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + GP+ + S+ + G L E R+LE L GK ++ ++ A Sbjct: 133 EAPKEVLRVGPLEIDSEKVVARLGGVRLELTPTEFRLLEALARTPGKAFSRAELLEAA-- 190 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 L D E VV+ H+ LR+KL G +++ R +GY + Sbjct: 191 LPDSDALERVVDVHLKNLRRKLEAAGGAGLLETVRGVGYRL 231 >gi|56421267|ref|YP_148585.1| two-component response regulator [Geobacillus kaustophilus HTA426] gi|261418254|ref|YP_003251936.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC61] gi|297529108|ref|YP_003670383.1| two component transcriptional regulator, winged helix family [Geobacillus sp. C56-T3] gi|319767786|ref|YP_004133287.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC52] gi|56381109|dbj|BAD77017.1| two-component response regulator (phosphate regulation) [Geobacillus kaustophilus HTA426] gi|261374711|gb|ACX77454.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC61] gi|297252360|gb|ADI25806.1| two component transcriptional regulator, winged helix family [Geobacillus sp. C56-T3] gi|317112652|gb|ADU95144.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC52] Length = 235 Score = 158 bits (399), Expect = 6e-37, Method: Composition-based stats. Identities = 47/229 (20%), Positives = 102/229 (44%), Gaps = 11/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + G + + E +S + + ++ L + Sbjct: 5 ILVVDDEQPIVTLLSYNLEKAGFHVVTAHDGEEALVKVASEQPALIILDLML--PKLDGV 62 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ + +R + P++ ++ + + G DD + KP RE++ARV AI RR + Sbjct: 63 DVCKRLRQQQIMTPILMLTARDDEFDKVLGLELGADDYMTKPFSPREVIARVKAILRRTE 122 Query: 121 VSNNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + AE+ +F + + + G+ L +E +L YL ++G+ + + Q+ Sbjct: 123 IVQPAAESSERLVVGELEIFPERYEATIGGKPLELTPKEFELLLYLARHKGRVLTRDQLL 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDW 222 SA++ ++ A + +V+ HIS LR+K+ + + R LGY ++ Sbjct: 183 SAVW-NYEFAGDTRIVDVHISHLREKIETDTKKPMYIKTVRGLGYKLEE 230 >gi|88808215|ref|ZP_01123726.1| two-component response regulator [Synechococcus sp. WH 7805] gi|88788254|gb|EAR19410.1| two-component response regulator [Synechococcus sp. WH 7805] Length = 277 Score = 158 bits (399), Expect = 6e-37, Method: Composition-based stats. Identities = 51/231 (22%), Positives = 94/231 (40%), Gaps = 16/231 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V+ + G + E L D+ ++ L Sbjct: 34 LLVVDDEPAVRRVLVMRLQLAGYRVVCAEDGEEALELFHRESPDLVVLDVML--PKLDGF 91 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R +RA S VP+I +S ++ + D G DD + KP +E+ AR+A I RR+ Sbjct: 92 AVCRRLRAESCVPIIFLSALEAISERVAGLDLGADDYLPKPFSPKELEARIATILRRVGR 151 Query: 122 SNNRAETGPIRV------------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 + AE + ++ R E L E +LE L G+ V Sbjct: 152 GSASAEPRELPTGQGVVRVGELVVDTNRRQVTRGSERIALTYTEFSLLELLFREPGRVVP 211 Query: 170 KTQIFSAIYG-LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218 + +I ++G + + VV+ ++++LR KL + + + + R +GY Sbjct: 212 RAEILEQLWGYPPRRSADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 262 >gi|318058513|ref|ZP_07977236.1| two-component system response regulator [Streptomyces sp. SA3_actG] Length = 257 Score = 158 bits (399), Expect = 6e-37, Method: Composition-based stats. Identities = 45/222 (20%), Positives = 89/222 (40%), Gaps = 7/222 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD V + G +++ + R D+ ++ L G LE Sbjct: 20 LVVDDDPTVAEVVAGYLLRAGCTVDRAGDGPSALARAHTHRPDLVVLDLML--PGMDGLE 77 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +R VP+I ++ + + G DD V KP RE++ RV ++ RR + Sbjct: 78 VCRRMRERHPVPVIMLTARGDEDDRILGLERGADDYVTKPFSPRELVLRVESVLRRTRPD 137 Query: 123 NNRAETGPIR--VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 R + R G L RE +L + + + G+ ++ ++ ++G Sbjct: 138 PAPDPVRLGRLALDPAARLATRDGTPLSLTLREFDLLAFFLRHPGRAYSREELMREVWGW 197 Query: 181 FDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 E + + V HI +LR K+ + + + +GY + Sbjct: 198 --EFGDLSTVTVHIRRLRAKIEDDPAAPRAIRTVWGVGYRFE 237 >gi|229543964|ref|ZP_04433023.1| two component transcriptional regulator, winged helix family [Bacillus coagulans 36D1] gi|229325103|gb|EEN90779.1| two component transcriptional regulator, winged helix family [Bacillus coagulans 36D1] Length = 238 Score = 158 bits (399), Expect = 6e-37, Method: Composition-based stats. Identities = 31/232 (13%), Positives = 82/232 (35%), Gaps = 14/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ + +++ + + ++ G+ + Sbjct: 7 ILVVDDEERIRRLLRMYLERENYTIDEAEDGDTALKMALEKDYSCILLDIM--MPGKDGI 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112 E+ + + P+I ++ ++ F+ G DD + KP RE + Sbjct: 65 EVCQELHEKKMTPVIMLTAKGEEANRVEGFEVGADDYIVKPFSPREVVLRVKALLRRSLQ 124 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + I + +D G+ L +E +L +L + K + Q Sbjct: 125 TGFLNADTKAKDIVVFPHITIDNDAHRVTADGKEVNLTPKEYELLYFLAKSPDKVFDREQ 184 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG--FDPVDSKRFLGYSIDW 222 + ++ ++ + V++H+ +LR+KL + + +GY + Sbjct: 185 LLKEVW-HYEFFGDLRTVDTHVKRLREKLNKVSENAAKMIVTVWGVGYKFEV 235 >gi|89893594|ref|YP_517081.1| hypothetical protein DSY0848 [Desulfitobacterium hafniense Y51] gi|89333042|dbj|BAE82637.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 230 Score = 158 bits (399), Expect = 6e-37, Method: Composition-based stats. Identities = 49/226 (21%), Positives = 95/226 (42%), Gaps = 9/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L+DD + + A +G + + L D+ ++ L G Sbjct: 3 ILLVDDEKNISNVLKAYLQQEGFQVTTAINGLVALTLFKENPYDLVLLDLML--PGLSGE 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116 E+ + IR S VP+I ++ L+ ++ F+ G DD ++KP RE++AR Sbjct: 61 EICKEIRKISAVPIIMLTAKIELEDRIEGFNMGADDYISKPFSPREVVARVKAVLRRTDI 120 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 ++ + + + + + EV PL E +IL L G+ ++ Q+ Sbjct: 121 ETSPLAEVISYDNGLVIDNSRHEVRFNKEVIPLTPTEFKILGSLAKYPGRVYSRGQLVEI 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + G D ++ V+++HI KLR+KL + + +GY + Sbjct: 181 VQG-HDFGGDDRVIDAHIKKLRQKLEKVPSDPKIILTVYGVGYKFN 225 >gi|319651813|ref|ZP_08005938.1| PhoP protein [Bacillus sp. 2_A_57_CT2] gi|317396465|gb|EFV77178.1| PhoP protein [Bacillus sp. 2_A_57_CT2] Length = 238 Score = 158 bits (399), Expect = 6e-37, Method: Composition-based stats. Identities = 49/233 (21%), Positives = 96/233 (41%), Gaps = 15/233 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + G + + + L S + D+ ++ L + Sbjct: 5 ILVVDDEQSIVTLLQYNLQQAGYEVITAMDGQEGKDLAISEKPDLIVLDLML--PKLDGI 62 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ + +R P++ ++ + + G DD + KP RE++ARV AI RR + Sbjct: 63 EVCKQLRQQKIATPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTQ 122 Query: 121 VSNNRAETGPIRVF----------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 AE + + E+ L +E +L YL N+ + + + Sbjct: 123 FVPEAAEEKTEDGDSLRIGGLKIFPQHYEAYFEDELLELTPKEFELLLYLAKNKSRVLTR 182 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 Q+ SA++ +D A + +V+ HIS LR+K+ + + R LGY ++ Sbjct: 183 DQLLSAVW-NYDFAGDTRIVDVHISHLREKIETNTKKPVYIKTIRGLGYKLEE 234 >gi|75674709|ref|YP_317130.1| phosphate regulon transcriptional regulatory protein phoB [Nitrobacter winogradskyi Nb-255] gi|74419579|gb|ABA03778.1| two component transcriptional regulator, winged helix family [Nitrobacter winogradskyi Nb-255] Length = 234 Score = 158 bits (399), Expect = 6e-37, Method: Composition-based stats. Identities = 52/226 (23%), Positives = 94/226 (41%), Gaps = 8/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G +E + + D+ ++ L G + Sbjct: 5 ILVVEDEEALTTLLRYNLEAEGYEVETVVRGDEADTRLKERVPDLVVLDWML--PGLSGI 62 Query: 62 ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IY 116 EL R +RA S P+I ++ + +G DD V KP E+LARV + Sbjct: 63 ELCRRLRARSDTRQLPIIMLTARGEESERVRGLATGADDYVVKPFSVPELLARVKSLLRR 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + G I + D G L E R+LE+ + + G+ ++ Q+ + Sbjct: 123 ASPARLASVLSFGDIELDRDRHRVVRSGRPIDLGPTEYRLLEFFLEHPGRVFSREQLLDS 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 ++G D ++E V+ HI +LRK L DP+ + R GY++D Sbjct: 183 VWGR-DVYIDERTVDVHIGRLRKLLNPDGELDPIRTVRGAGYALDE 227 >gi|295706850|ref|YP_003599925.1| two-component response regulator PhoP [Bacillus megaterium DSM 319] gi|294804509|gb|ADF41575.1| two-component response regulator PhoP [Bacillus megaterium DSM 319] Length = 238 Score = 158 bits (399), Expect = 6e-37, Method: Composition-based stats. Identities = 44/232 (18%), Positives = 92/232 (39%), Gaps = 14/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + G ++E E + D+ ++ L + Sbjct: 5 LLVVDDEQSISTLLQYNLQQAGFTVETAEDGEEGYNKALEGKPDLIVLDLML--PKMDGI 62 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILAR 111 E+ + +R P++ ++ + + G DD + KP RE + Sbjct: 63 EVCKKLRQQKVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTQ 122 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + A + R G +++ D + E L +E +L YL +G+ + + Sbjct: 123 IIAQENEQEEDGERIMIGDLKILPDHYEAYFNQEQLELTPKEFELLLYLAKYKGRVLTRD 182 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 Q+ SA++ +D A + +V+ HIS LR+K+ + + + R LGY ++ Sbjct: 183 QLLSAVW-NYDFAGDTRIVDVHISHLREKIEHNTRKPVYIKTIRGLGYKLEE 233 >gi|113954007|ref|YP_729352.1| two-component response regulator [Synechococcus sp. CC9311] gi|113881358|gb|ABI46316.1| two-component response regulator [Synechococcus sp. CC9311] Length = 255 Score = 158 bits (399), Expect = 6e-37, Method: Composition-based stats. Identities = 51/231 (22%), Positives = 92/231 (39%), Gaps = 16/231 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V+ + G ++ E S D+ ++ L Sbjct: 12 ILVVDDEPAVRRVLLMRLQLAGYNVVSAEDGEEALEKFHSESPDLVVLDVML--PKMDGF 69 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI------ 115 + R +RA S VP+I +S S+ + D G DD + KP +E+ AR+ I Sbjct: 70 AVCRRLRAESCVPIIFLSALESISERVAGLDLGADDYLPKPFSPKELEARIFTILRRVGS 129 Query: 116 ------YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 R + G + V ++ R E L E +LE L + G V Sbjct: 130 GSATVEPREIPSGQGVMRVGDLVVDTNRRQVNRGTERIALTYTEFSLLELLFRDPGHVVP 189 Query: 170 KTQIFSAIYG-LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218 + +I ++G A + VV+ ++++LR KL + + + + R +GY Sbjct: 190 RAEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPEMILTVRGIGY 240 >gi|225573005|ref|ZP_03781760.1| hypothetical protein RUMHYD_01196 [Blautia hydrogenotrophica DSM 10507] gi|225039656|gb|EEG49902.1| hypothetical protein RUMHYD_01196 [Blautia hydrogenotrophica DSM 10507] Length = 229 Score = 158 bits (399), Expect = 6e-37, Method: Composition-based stats. Identities = 44/225 (19%), Positives = 96/225 (42%), Gaps = 10/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD L+ G D + ++ E L + + D+ ++ L LE Sbjct: 6 LVVDDEKLIVKGIRFSLEQDDMDVDCAYDGEEALELAKANKYDIILLDLML--PKMDGLE 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH------HREILARVAAIY 116 + + IR S VP++ ++ + + G DD + KP + + + R A + Sbjct: 64 VCQQIREFSDVPIVMLTAKGEDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRAHLE 123 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + + G +++ + R + + L +E +LE L+ N K ++ + + Sbjct: 124 AKTQEKAKTVQVGELKMDCESRRVFIGDKEINLTAKEFDVLELLVFNPNKVYSRENLLNI 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++G ++ + V+ HI +LR+K+ N V +K +GY Sbjct: 184 VWG-YEYPGDVRTVDVHIRRLREKIESNPSEPKYVHTKWGVGYYF 227 >gi|302384795|ref|YP_003820617.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] gi|302195423|gb|ADL02994.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] Length = 236 Score = 158 bits (399), Expect = 6e-37, Method: Composition-based stats. Identities = 46/232 (19%), Positives = 96/232 (41%), Gaps = 15/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + + E E + R + ++ L G Sbjct: 7 ILIVDDDSNIAELISLYLLKECYETEIVGDGEEALRVFPEFRPHLVLLDLML--PGMDGY 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 ++ R +R+ SQVP+I +S + + + G DD + KP +E++ARV A+ RR + Sbjct: 65 QVCREMRSASQVPIIMLSAKGEVFDKVLGLELGADDYMIKPFDSKELVARVKAVLRRYQT 124 Query: 121 ----------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 E + V G +P +E +L +L ++ + + Sbjct: 125 SPVPAALHTDHQGEYVEYPDLIVNLTNYSVIYMGHSIEMPPKELELLYFLASSPNQVFTR 184 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 Q+ I+G ++ + V+ HI +LR+K+++ G+ + +GY + Sbjct: 185 EQLLDHIWG-YEYIGDTRTVDVHIKRLREKIKDHAGWAL-TTVWGIGYKFEV 234 >gi|121535983|ref|ZP_01667776.1| two component transcriptional regulator, winged helix family [Thermosinus carboxydivorans Nor1] gi|121305443|gb|EAX46392.1| two component transcriptional regulator, winged helix family [Thermosinus carboxydivorans Nor1] Length = 231 Score = 158 bits (399), Expect = 6e-37, Method: Composition-based stats. Identities = 44/226 (19%), Positives = 92/226 (40%), Gaps = 9/226 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD +++ F G ++ + D+ ++ E Sbjct: 7 LIVDDEKQIREILAIYFTQSGFTVAEAADGAEALIKVEQVKPDIVILDIM--MPVLDGFE 64 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + IR +S VP+I ++ + + G DD V KP + +E++ARV AI RR Sbjct: 65 VCQQIRKYSPVPIIMLTSRTQDDDRIMGLEIGADDYVTKPFNPKEVVARVKAILRRTAAP 124 Query: 123 NNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + + G+ L +ER +L L ++ GK +++ Q+ + Sbjct: 125 QQYTQADILRFPELEINMAEHTVIAFGKPVALANKEREVLWQLASHAGKVLSREQLLELV 184 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSIDW 222 + + + V++H+ +LRKKL + + +GY + Sbjct: 185 WD-YSYCGDTRTVDTHVKRLRKKLGVGPHSPWDIKTVWGIGYKFEV 229 >gi|89097745|ref|ZP_01170633.1| hypothetical protein B14911_15157 [Bacillus sp. NRRL B-14911] gi|89087604|gb|EAR66717.1| hypothetical protein B14911_15157 [Bacillus sp. NRRL B-14911] Length = 233 Score = 158 bits (399), Expect = 6e-37, Method: Composition-based stats. Identities = 46/228 (20%), Positives = 90/228 (39%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D V F +G + +S + + D+ ++ L + Sbjct: 3 ILVVEDNESVCSMLEMFFMKEGYTGRFVHSGQEGFDAFNKESWDLVIVDWML--PVMDGV 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R IR S VP+I ++ S + + G DD V KP ++AR+ A+ RR + Sbjct: 61 TLCRKIRELSTVPIIMLTAKDSESDQVLGLEMGADDYVTKPFSPLALMARIKAVTRRYQA 120 Query: 122 SNNRAETGPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 +++ E + L +E +L Y + N + ++ Q+ Sbjct: 121 DSSKQEEANYISSQFFKISKDTREVLYKGQPLNNLTPKEFDLLYYFVKNPRQVFSREQLL 180 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 ++G + +E V+ HI +LRKK+ + + +GY D Sbjct: 181 DRVWG-YQFYGDERTVDVHIKRLRKKIGTTSQP-FIHTVWGIGYKFDE 226 >gi|228918078|ref|ZP_04081606.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228930472|ref|ZP_04093472.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228936746|ref|ZP_04099537.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228949188|ref|ZP_04111456.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228988693|ref|ZP_04148779.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229094577|ref|ZP_04225644.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock3-42] gi|229124969|ref|ZP_04254143.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus 95/8201] gi|229142215|ref|ZP_04270739.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BDRD-ST26] gi|229159026|ref|ZP_04287082.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus ATCC 4342] gi|229187695|ref|ZP_04314831.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BGSC 6E1] gi|229199595|ref|ZP_04326256.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus m1293] gi|228584000|gb|EEK42157.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus m1293] gi|228595763|gb|EEK53447.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BGSC 6E1] gi|228624445|gb|EEK81216.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus ATCC 4342] gi|228641233|gb|EEK97540.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BDRD-ST26] gi|228658470|gb|EEL14136.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus 95/8201] gi|228688824|gb|EEL42655.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock3-42] gi|228771144|gb|EEM19624.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228810471|gb|EEM56824.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228822955|gb|EEM68796.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228829191|gb|EEM74828.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228841558|gb|EEM86674.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 234 Score = 158 bits (399), Expect = 6e-37, Method: Composition-based stats. Identities = 52/227 (22%), Positives = 100/227 (44%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + + + + + D+ ++ L G+ L Sbjct: 5 ILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKATEEQPDMVLLDIML--PGKDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR S++P+I ++ S + + G DD V KP RE+LARV A RR + Sbjct: 63 EVCREIRKSSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQ 122 Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N GPI + + + E L RE +L YL + G+ + + + Sbjct: 123 GGAAEKEENTEMVIGPIVINPNAYSVTKREENIELTHREFELLHYLAKHLGQVMTREHLL 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++G +D + V+ + +LR+K+ + + ++R +GY + Sbjct: 183 QTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGYYL 228 >gi|197302877|ref|ZP_03167929.1| hypothetical protein RUMLAC_01606 [Ruminococcus lactaris ATCC 29176] gi|197298114|gb|EDY32662.1| hypothetical protein RUMLAC_01606 [Ruminococcus lactaris ATCC 29176] Length = 233 Score = 158 bits (399), Expect = 6e-37, Method: Composition-based stats. Identities = 38/229 (16%), Positives = 88/229 (38%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + + + E + + ++ ++ L G Sbjct: 7 ILIVDDDENIAELISLYLTKECFDTKMVYNGEDALAAFDTYQPNLILLDLML--PGIDGY 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI---------LARV 112 ++ R IRA S P+I +S + + + G DD + KP +E+ +V Sbjct: 65 QVCREIRAKSVTPIIMLSAKSEVFDKVLGLELGADDYIMKPFDAKEMVARVRAVLRRYQV 124 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + E + + G+ +P +E +L L A+ + + Q Sbjct: 125 GRQAEPAREKTKCVEYEGLTINLTNYSVLCDGKNVEMPPKELELLYCLAASPNQVFTREQ 184 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + I+G ++ + V+ HI +LR+K+++ + + +GY + Sbjct: 185 LLDRIWG-YEYIGDTRTVDVHIKRLREKIKDHPHWSL-STVWGIGYKFE 231 >gi|228905410|ref|ZP_04069365.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis IBL 4222] gi|228968616|ref|ZP_04129601.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar sotto str. T04001] gi|228791108|gb|EEM38725.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar sotto str. T04001] gi|228854230|gb|EEM98933.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis IBL 4222] Length = 234 Score = 158 bits (399), Expect = 6e-37, Method: Composition-based stats. Identities = 52/227 (22%), Positives = 100/227 (44%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + + + + + D+ ++ L G+ L Sbjct: 5 ILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIML--PGKDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR S++P+I ++ S + + G DD V KP RE+LARV A RR + Sbjct: 63 EVCREIRKSSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQ 122 Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N GPI + + + E L RE +L YL + G+ + + + Sbjct: 123 GGSAEKEENTEMVIGPIVINPNAYSVTKREENIELTHREFELLHYLAKHLGQVMTREHLL 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++G +D + V+ + +LR+K+ + + ++R +GY + Sbjct: 183 QTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGYYL 228 >gi|332971396|gb|EGK10354.1| DNA-binding response regulator [Desmospora sp. 8437] Length = 273 Score = 158 bits (399), Expect = 7e-37, Method: Composition-based stats. Identities = 40/225 (17%), Positives = 90/225 (40%), Gaps = 11/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + D +G +E + + D+ ++ L G + Sbjct: 43 ILVVEDEKPIADILQFNLSKEGFEVECIHDGDEALKRIHEEPPDLILLDLML--PGTDGI 100 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-------ILARVAA 114 E+ R +R ++P+I ++ S + + G DD V KP +RE L RV Sbjct: 101 EICRKVREKYRMPIIMVTAKDSEVDKVLGLELGADDYVTKPFSNRELLARIKANLRRVRD 160 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 ++ + G + + + L RE +L Y+ + + + + + Sbjct: 161 HGESSTDPGDQVQVGSLTIDQGSYLVTKHQKTLDLTHREFELLLYMAKHVNQVLTREHLL 220 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218 +++G +D + V+ I +LR+K+ + + ++R +GY Sbjct: 221 QSVWG-YDYFGDVRTVDVTIRRLREKIEQDPSQPQYIITRRGIGY 264 >gi|271961733|ref|YP_003335929.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270504908|gb|ACZ83186.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 231 Score = 158 bits (399), Expect = 7e-37, Method: Composition-based stats. Identities = 45/226 (19%), Positives = 91/226 (40%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V + DG +E S D+ ++ L L Sbjct: 5 ILVVDDDPTVAEVVARYLERDGHVVECVGDGAEALRRALSDPPDLLVLDLML--PKMDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R +R VP+I ++ + ++G DD V KP RE+ RV ++ RR + Sbjct: 63 QVCRKLRERWPVPVIMLTALGEEIDRVVGLETGADDYVTKPFSPRELALRVQSVLRRARG 122 Query: 122 SNNRA-----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 ++ A G + V + + L RE +L +LM N + +++ + Sbjct: 123 ASTPAGTGVLRDGTLVVDVGAHEVRLGDGQIMLTAREFDLLAHLMRNPRQAFSRSALLDQ 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 ++G + + V H+ +LR+K+ + + + +GY + Sbjct: 183 VWGW--SFGDSSTVTVHVRRLREKIEPDPTAPRRIVTVWGVGYRYE 226 >gi|228956708|ref|ZP_04118495.1| hypothetical protein bthur0005_2480 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228802973|gb|EEM49804.1| hypothetical protein bthur0005_2480 [Bacillus thuringiensis serovar pakistani str. T13001] Length = 238 Score = 158 bits (399), Expect = 7e-37, Method: Composition-based stats. Identities = 42/228 (18%), Positives = 91/228 (39%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD +++ + +++ + E L + ++ ++ + Sbjct: 6 ILIADDDKEIRNLLKIYLERELYTVDTAINGEEALHLFNQNNYNLVILDLM--MPKIDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + +R + VP++ ++ + G DD + KP E++ARV A+ RR V Sbjct: 64 EVCKKLRDKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVIARVKALMRRFLV 123 Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + + E L +E +L++ +N G+ KTQ+ Sbjct: 124 LGSNNTAQEKTTLSFKGLTINLNTYTVHTNKEEISLTGKELELLKFFTSNPGQVFTKTQL 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 F ++ + ++N V HI KLRKK+ + + + +GY Sbjct: 184 FRNVWD-DNYIEDDNTVMVHIRKLRKKIEIDPSNPKFIQTVWGIGYKF 230 >gi|269836402|ref|YP_003318630.1| two component transcriptional regulator, winged helix family [Sphaerobacter thermophilus DSM 20745] gi|269785665|gb|ACZ37808.1| two component transcriptional regulator, winged helix family [Sphaerobacter thermophilus DSM 20745] Length = 233 Score = 157 bits (398), Expect = 7e-37, Method: Composition-based stats. Identities = 47/231 (20%), Positives = 86/231 (37%), Gaps = 15/231 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A ++ G + E ++ D+ ++ L Sbjct: 4 ILVVEDEASIRTTIAYNLKKAGHDVRTVADGEAAIAQANADPPDLVILDIML--PTIDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR---------- 111 ++ R IR S VP++ ++ + + G DD V KP RE++AR Sbjct: 62 DVCRHIRRSSSVPILMLTARDDEVDRVVGLEIGADDYVTKPFSMRELMARVKALLRRREL 121 Query: 112 -VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + E G +R+ G L +E +L YL +RG Sbjct: 122 LEQELASNPDGREEVFEIGTLRIDPAAYRVTRNGREVQLTPKEMDLLVYLARHRGNVCPT 181 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 +I A++G +D + V HI LR+KL +++ R +GY + Sbjct: 182 RRILEAVWG-YDYYGDNRTVAVHIHGLREKLEEDPRQPRLIETVRGVGYRL 231 >gi|332971704|gb|EGK10652.1| DNA-binding response regulator [Desmospora sp. 8437] Length = 237 Score = 157 bits (398), Expect = 7e-37, Method: Composition-based stats. Identities = 41/227 (18%), Positives = 85/227 (37%), Gaps = 12/227 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++ DD ++D + ++ + E L + ++ ++ +E Sbjct: 7 LIADDEKEIRDLLKKYLEKEFYKVDVAGNGEEALHLFDDNKYNLIILDLM--MPKVDGIE 64 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARVAA 114 + R +R + VP++ ++ + G DD + KP E+ + Sbjct: 65 VCRRLRNKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSINEVVARVKALLRRFLVL 124 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 R N + I + GE L +E ++L++ + G+ KTQ+F Sbjct: 125 GSDRSSHENKLIKFKGISIDLKKCTVITAGEEVSLTAKEFQLLKFFATHPGQVFTKTQLF 184 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++ + ++N V HI KLRKK+ + + + LGY Sbjct: 185 RNVWD-GNYPEDDNTVMVHIRKLRKKIEADPSNPQFILTVWGLGYKF 230 >gi|108803229|ref|YP_643166.1| two component transcriptional regulator [Rubrobacter xylanophilus DSM 9941] gi|108764472|gb|ABG03354.1| two component transcriptional regulator, winged helix family [Rubrobacter xylanophilus DSM 9941] Length = 234 Score = 157 bits (398), Expect = 7e-37, Method: Composition-based stats. Identities = 46/230 (20%), Positives = 90/230 (39%), Gaps = 15/230 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQ-SSAREDVSAIEAFLIGKGEKVL 61 ++++D V+D +G+ E E L S D+ ++ L G + Sbjct: 5 LIVEDDPAVRDVVEHTLSREGIETETVPDGETALELLSDSKPFDLVLLDVML--PGMDGI 62 Query: 62 ELPRIIRA----HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LAR 111 + R +R H VP++ ++ + + + G DD + KP R++ R Sbjct: 63 SVCRELRESHSPHRTVPVVMLTARDDETSIVVGLEVGADDYITKPFSPRQLASRVRAQLR 122 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + + + E + + R +GE L RE +L L +N G+ ++ Sbjct: 123 RQRMNAQASPEQRKLEFPGLEIDLLRRRVTARGEQVELTAREFEVLALLASNPGRVYSRE 182 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 QI ++G + E + HI LR+K+ + + + R +GY Sbjct: 183 QIMDHLWG-GEFFGEPRSADVHIQHLRQKIEPDPKNPRYIQTVRGMGYRF 231 >gi|300857304|ref|YP_003782288.1| putative sensory transduction protein [Clostridium ljungdahlii DSM 13528] gi|300437419|gb|ADK17186.1| predicted sensory transduction protein [Clostridium ljungdahlii DSM 13528] Length = 228 Score = 157 bits (398), Expect = 7e-37, Method: Composition-based stats. Identities = 35/224 (15%), Positives = 89/224 (39%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + G + N + E + + D+ ++ L + Sbjct: 8 ILIVDDDENICEVIKMYVESAGYETKVVNDGKTAETMFLEYKPDLVLLDIML--PNIDGI 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI---HHREILARVAAIYRR 118 ++ + IR + P+I ++ + + G DD + KP + V Y Sbjct: 66 DVLKWIRKEYETPVIMLTAKGETFDKVLGLELGADDYIVKPFEAKEMLARIKAVLRRYSV 125 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + + + + + + +P +E +L YL +N+ + + Q+ ++ Sbjct: 126 DNENKEVLKFNQLTIDINSYTVVYKDDEIKMPPKEFELLHYLASNKNRVFTREQLLCEVW 185 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 G +D + V+ H+ +LR+KL+ + +++ +GY + Sbjct: 186 G-YDYPGDSRTVDVHVKRLREKLQGGPNWQ-IETVWGVGYKFEV 227 >gi|300118833|ref|ZP_07056553.1| DNA-binding response regulator YycF [Bacillus cereus SJ1] gi|298723801|gb|EFI64523.1| DNA-binding response regulator YycF [Bacillus cereus SJ1] Length = 235 Score = 157 bits (398), Expect = 7e-37, Method: Composition-based stats. Identities = 53/227 (23%), Positives = 100/227 (44%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + + + S + D+ ++ L G+ L Sbjct: 6 ILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKASEEQPDMVLLDIML--PGKDGL 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR S++P+I ++ S + + G DD V KP RE+LARV A RR + Sbjct: 64 EVCREIRKSSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQ 123 Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N GPI + + + E L RE +L YL + G+ + + + Sbjct: 124 GGAAEKEENTEMVIGPIVINPNAYSVTKREENIELTHREFELLHYLAKHLGQVMTREHLL 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++G +D + V+ + +LR+K+ + + ++R +GY + Sbjct: 184 QTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGYYL 229 >gi|20809033|ref|NP_624204.1| response regulator [Thermoanaerobacter tengcongensis MB4] gi|20517704|gb|AAM25808.1| Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Thermoanaerobacter tengcongensis MB4] Length = 231 Score = 157 bits (398), Expect = 7e-37, Method: Composition-based stats. Identities = 36/224 (16%), Positives = 83/224 (37%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G E + D+ ++ L Sbjct: 5 ILIVDDEKPLVDIIKYNLEKEGYITFEAYDGEEAVKMAKEQNPDLIILDVML--PKMDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117 + + +R VP++ ++ + + G DD + KP R + A + + Sbjct: 63 TVLKTLRQSMTVPILMLTAKEEEVDKVLGLELGADDYITKPFSMRELVARVKANLRRVSF 122 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 N+ +++ E + L RE +L +L+ N+G ++ + + Sbjct: 123 NGSEQNHIIRIKNLKIDILKYKVEKNNKEIELTSREFELLRFLVLNKGLVFSREALLEKV 182 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 +G ++ + V+ I +LR+K+ + + +KR +GY Sbjct: 183 WG-YEYFGDIRTVDVTIRRLREKIEDDPSNPKFIHTKRGVGYYF 225 >gi|229014632|ref|ZP_04171746.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus mycoides DSM 2048] gi|229136291|ref|ZP_04265038.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BDRD-ST196] gi|229170168|ref|ZP_04297855.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH621] gi|228613313|gb|EEK70451.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH621] gi|228647163|gb|EEL03251.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BDRD-ST196] gi|228746643|gb|EEL96532.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus mycoides DSM 2048] Length = 234 Score = 157 bits (398), Expect = 7e-37, Method: Composition-based stats. Identities = 53/227 (23%), Positives = 101/227 (44%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + + + + + D+ ++ L G+ L Sbjct: 5 ILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIML--PGKDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR S++P+I ++ S + + G DD V KP RE+LARV A RR + Sbjct: 63 EVCREIRKSSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQ 122 Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N GPI + S+ + E L RE +L YL + G+ + + + Sbjct: 123 GGAAEKEENTEMVIGPIVINSNAYSVTKREESIELTHREFELLHYLAKHLGQVMTREHLL 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++G +D + V+ + +LR+K+ + + ++R +GY + Sbjct: 183 QTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGYYL 228 >gi|228924210|ref|ZP_04087481.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228942615|ref|ZP_04105147.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228955717|ref|ZP_04117712.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228975545|ref|ZP_04136097.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228982181|ref|ZP_04142470.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis Bt407] gi|229035124|ref|ZP_04189070.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH1271] gi|229051135|ref|ZP_04194679.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH676] gi|229072931|ref|ZP_04206127.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus F65185] gi|229082674|ref|ZP_04215131.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock4-2] gi|229112879|ref|ZP_04242410.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock1-15] gi|229130712|ref|ZP_04259665.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BDRD-Cer4] gi|229148016|ref|ZP_04276355.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BDRD-ST24] gi|229164416|ref|ZP_04292345.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus R309803] gi|229193717|ref|ZP_04320658.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus ATCC 10876] gi|228589742|gb|EEK47620.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus ATCC 10876] gi|228619066|gb|EEK75963.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus R309803] gi|228635441|gb|EEK91932.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BDRD-ST24] gi|228652729|gb|EEL08614.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BDRD-Cer4] gi|228670558|gb|EEL25871.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock1-15] gi|228700635|gb|EEL53164.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock4-2] gi|228710177|gb|EEL62155.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus F65185] gi|228722198|gb|EEL73599.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH676] gi|228728190|gb|EEL79220.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH1271] gi|228777533|gb|EEM25811.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis Bt407] gi|228784155|gb|EEM32182.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228803945|gb|EEM50569.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228817041|gb|EEM63134.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228835428|gb|EEM80798.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 234 Score = 157 bits (398), Expect = 7e-37, Method: Composition-based stats. Identities = 52/227 (22%), Positives = 100/227 (44%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + + + + + D+ ++ L G+ L Sbjct: 5 ILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIML--PGKDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR S++P+I ++ S + + G DD V KP RE+LARV A RR + Sbjct: 63 EVCREIRKSSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQ 122 Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N GPI + + + E L RE +L YL + G+ + + + Sbjct: 123 GGAAEKEENTEMVIGPIVINPNAYSVTKREENIELTHREFELLHYLAKHLGQVMTREHLL 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++G +D + V+ + +LR+K+ + + ++R +GY + Sbjct: 183 QTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGYYL 228 >gi|258512880|ref|YP_003186314.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257479606|gb|ACV59925.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 230 Score = 157 bits (398), Expect = 7e-37, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 88/224 (39%), Gaps = 10/224 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + +G + + + D+ ++ L Sbjct: 5 ILVVEDEEPIANILRFALEREGYRVSCAYDGAEALERWRALQPDLILLDVML--PEVDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R IR S VP+I ++ + + G DD V KP RE++ARV A RR Sbjct: 63 DVLRAIRQASGVPVIILTAKDDEVDKVLGLELGADDYVTKPFSTRELVARVKANLRRASD 122 Query: 122 SNNRAETGPIR------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + G+ PL RE ++L L A+ G+ + Q+ Sbjct: 123 VLREHKENERYVVQDLVIDLAEYTVTKAGQPIPLTHREFQVLAVLAAHPGRVFTRDQLVD 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218 ++G D + V+ I +LR+KL + V ++R +GY Sbjct: 183 QVWG-SDYVGDTRAVDVTIRRLREKLEPDPSQPRYVLTRRGVGY 225 >gi|254479597|ref|ZP_05092907.1| response regulator receiver domain protein [Carboxydibrachium pacificum DSM 12653] gi|214034471|gb|EEB75235.1| response regulator receiver domain protein [Carboxydibrachium pacificum DSM 12653] Length = 231 Score = 157 bits (398), Expect = 7e-37, Method: Composition-based stats. Identities = 36/224 (16%), Positives = 83/224 (37%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G E + D+ ++ L Sbjct: 5 ILIVDDEKPLVDIIKYNLEKEGYITFEAYDGEEAVKMAKEQNPDLIILDVML--PKMDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117 + + +R VP++ ++ + + G DD + KP R + A + + Sbjct: 63 TVLKTLRQSMTVPILMLTAKEEEVDKVLGLELGADDYITKPFSMRELIARVKANLRRVSF 122 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 N+ +++ E + L RE +L +L+ N+G ++ + + Sbjct: 123 NGSEQNHIIRIKNLKIDILKYKVEKNNKEIELTSREFELLRFLVLNKGLVFSREALLEKV 182 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 +G ++ + V+ I +LR+K+ + + +KR +GY Sbjct: 183 WG-YEYFGDIRTVDVTIRRLREKIEDDPSNPKFIHTKRGVGYYF 225 >gi|87123222|ref|ZP_01079073.1| two-component response regulator [Synechococcus sp. RS9917] gi|86168942|gb|EAQ70198.1| two-component response regulator [Synechococcus sp. RS9917] Length = 256 Score = 157 bits (398), Expect = 7e-37, Method: Composition-based stats. Identities = 53/231 (22%), Positives = 95/231 (41%), Gaps = 16/231 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V+ + G + E L D+ ++ L Sbjct: 14 ILVVDDEPAVRRVLVMRLQLAGYQVICAEDGEKALELFHRDSPDLVVLDVML--PKLDGF 71 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R +RA S VP+I +S ++ + D G DD + KP +E+ AR+A+I RR+ Sbjct: 72 AVCRRLRAESCVPIIFLSALEAISERVAGLDLGADDYLPKPFSPKELEARIASILRRIGR 131 Query: 122 SNNRAETGPI------------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 + AE + V ++ R E L E +LE L G+ V Sbjct: 132 GSATAEPREVPVGQGVLRLGDLMVDTNRRQVTRGSERIALTYTEFSLLELLFREPGRVVP 191 Query: 170 KTQIFSAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGY 218 + +I ++G A + VV+ ++++LR KL + + + R +GY Sbjct: 192 RAEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 242 >gi|154503469|ref|ZP_02040529.1| hypothetical protein RUMGNA_01293 [Ruminococcus gnavus ATCC 29149] gi|153795569|gb|EDN77989.1| hypothetical protein RUMGNA_01293 [Ruminococcus gnavus ATCC 29149] Length = 233 Score = 157 bits (398), Expect = 8e-37, Method: Composition-based stats. Identities = 45/230 (19%), Positives = 99/230 (43%), Gaps = 13/230 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + + ++ E + + ++ ++ L G Sbjct: 7 ILIVDDDENIAELISLYLMKECFDTKIVSNGEDALSAFETYQPNLVLLDLML--PGIDGY 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R +RA SQVP+I +S + + + G DD + KP +E++ARV A+ RR + Sbjct: 65 QVCRELRAKSQVPIIMLSAKGEVFDKVLGLELGADDYIMKPFDSKEMVARVRAVLRRYQP 124 Query: 122 SNN---------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 E + + G+ +P +E +L +L A+ + + Q Sbjct: 125 VKPEAPAAEKVKCVEYDGLTINLTNYSVLCDGQNVDMPPKELELLYFLAASPNQVFTREQ 184 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + I+G ++ + V+ HI +LR+K+++ G+ + +GY + Sbjct: 185 LLDQIWG-YEYIGDTRTVDVHIKRLREKIKDHPGWGL-STVWGIGYKFEV 232 >gi|228911305|ref|ZP_04075109.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis IBL 200] gi|228848323|gb|EEM93173.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis IBL 200] Length = 234 Score = 157 bits (398), Expect = 8e-37, Method: Composition-based stats. Identities = 52/227 (22%), Positives = 100/227 (44%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + + + + + D+ ++ L G+ L Sbjct: 5 ILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIML--PGKDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR S++P+I ++ S + + G DD V KP RE+LARV A RR + Sbjct: 63 EVCREIRKSSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQ 122 Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N GPI + + + E L RE +L YL + G+ + + + Sbjct: 123 GGSAEKDENTEMVIGPIVINPNAYSVTKREENIELTHREFELLHYLAKHLGQVMTREHLL 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++G +D + V+ + +LR+K+ + + ++R +GY + Sbjct: 183 QTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGYYL 228 >gi|118443576|ref|YP_877112.1| transcriptional regulator [Clostridium novyi NT] gi|118134032|gb|ABK61076.1| transcriptional regulatory protein [Clostridium novyi NT] Length = 228 Score = 157 bits (398), Expect = 8e-37, Method: Composition-based stats. Identities = 39/224 (17%), Positives = 91/224 (40%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + G S E + + + D+ ++ L + Sbjct: 8 ILIVDDDENICEIIKMYLESSGYSTECCYDGKSAQTAFYEYKPDLVLLDVML--PHMDGI 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 ++ + IR + P+I ++ + + G DD + KP +E++AR+ Y Sbjct: 66 DVLKWIRKECETPVIMLTAKGETFDKVLALELGADDYIVKPFEPKELIARIKAVLRRYNV 125 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + + + + + +P +E +L YL +N K + Q+ ++ Sbjct: 126 ENEDKDVLKFKSLTIDINSYIVVYKDNEIKMPPKEFELLYYLASNCNKVFTREQLLCEVW 185 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 G +D + V+ HI +LR+KL+ + +++ +GY + Sbjct: 186 G-YDYPGDSRTVDVHIKRLREKLQGGPNWQ-IETVWGVGYKFEV 227 >gi|326332055|ref|ZP_08198340.1| DNA-binding response regulator RegX3 [Nocardioidaceae bacterium Broad-1] gi|325950193|gb|EGD42248.1| DNA-binding response regulator RegX3 [Nocardioidaceae bacterium Broad-1] Length = 225 Score = 157 bits (398), Expect = 8e-37, Method: Composition-based stats. Identities = 50/223 (22%), Positives = 90/223 (40%), Gaps = 7/223 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D A + + +G + D+ ++ L G E Sbjct: 5 LVVEDEASYSEALSYMLRKEGFEVAVAEDGTDALKEFDRNGADIVLLDLML--PGLSGTE 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRRL 119 + R IRA S VP+I ++ + + G DD V KP RE + V Sbjct: 63 VCRQIRATSSVPVIMVTAKDDEVDKVVGLELGADDYVTKPYSPRELVARIRAVLRRGTEP 122 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + E GP+R+ + V G LP +E +LE + N G+ + + Q+ ++G Sbjct: 123 DAAPATLEAGPVRMDVERHVVTVDGNEQRLPLKEFELLEMFLRNPGRVLTRGQLIDRVWG 182 Query: 180 LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 D + ++ H+ +LR KL + + + R LGY +D Sbjct: 183 -SDYVGDTKTLDVHVKRLRAKLEPDPSEPKFLVTVRGLGYKLD 224 >gi|307328971|ref|ZP_07608139.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] gi|306885333|gb|EFN16351.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] Length = 274 Score = 157 bits (398), Expect = 8e-37, Method: Composition-based stats. Identities = 45/231 (19%), Positives = 90/231 (38%), Gaps = 16/231 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD V + G G +++ ++ D+ ++ L G LE Sbjct: 11 LVVDDDPTVAEVVAGYLGRAGFAVDQAADGPGALARAAARWPDLVVLDLML--PGMDGLE 68 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +R VP+I ++ + + + G DD V KP RE++ RV ++ RR + Sbjct: 69 VCRALRGRGPVPVIMLTARGDEEDRILGLEIGADDYVTKPFSPRELVLRVESVLRRGRTG 128 Query: 123 NNRA-----------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 I + + R G L RE +L +L+ + G + Sbjct: 129 PQVPGSSAPAPGGVAHRAGITLDALARRATRDGRELALTVREFDLLSFLLRHPGVAFTRE 188 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 ++ ++G + + V H+ +LR K+ + + + +GY D Sbjct: 189 ELMREVWGWD--FGDLSTVTVHVRRLRGKVEDDPAAPRLIQTVWGIGYRFD 237 >gi|229176141|ref|ZP_04303634.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus MM3] gi|228607376|gb|EEK64705.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus MM3] Length = 234 Score = 157 bits (398), Expect = 8e-37, Method: Composition-based stats. Identities = 53/227 (23%), Positives = 101/227 (44%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + + + + + D+ ++ L G+ L Sbjct: 5 ILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIML--PGKDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR S++P+I ++ S + + G DD V KP RE+LARV A RR + Sbjct: 63 EVCREIRKSSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQ 122 Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N GPI + S+ + E L RE +L YL + G+ + + + Sbjct: 123 GGAAEKEENTEMVIGPIVINSNAYSVTKREENIELTHREFELLHYLAKHLGQVMTREHLL 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++G +D + V+ + +LR+K+ + + ++R +GY + Sbjct: 183 QTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGYYL 228 >gi|160893753|ref|ZP_02074537.1| hypothetical protein CLOL250_01307 [Clostridium sp. L2-50] gi|156864738|gb|EDO58169.1| hypothetical protein CLOL250_01307 [Clostridium sp. L2-50] Length = 238 Score = 157 bits (398), Expect = 8e-37, Method: Composition-based stats. Identities = 35/236 (14%), Positives = 80/236 (33%), Gaps = 19/236 (8%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + + ++ ++ L G Sbjct: 6 ILIVDDDENIAELISLYLNKECYETQIAADGTSALEAFVEFAPNLILLDVML--PGMDGY 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI---------------HHR 106 ++ IR S VP+I +S + + G DD + KP + Sbjct: 64 QVCTEIRKQSNVPIIMLSAKGEVFDKVLGLKIGADDYIVKPFDSNELVARVGALLRRCNS 123 Query: 107 EILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166 E + V ++G+ +P +E +L +L + + Sbjct: 124 RTDNSQNYNPTNADHIGTYVEYDNLVVNISNYTVTLEGKNLEMPPKELELLYFLASRPNQ 183 Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + Q+ ++G ++ + V+ HI +LR+KL +K + + + +GY + Sbjct: 184 VFTREQLLDKLWG-YEYVGDTRTVDVHIKRLREKLTDKYNWS-IFTVWGIGYKFEV 237 >gi|163848409|ref|YP_001636453.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222526334|ref|YP_002570805.1| winged helix family two component transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163669698|gb|ABY36064.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222450213|gb|ACM54479.1| two component transcriptional regulator, winged helix family [Chloroflexus sp. Y-400-fl] Length = 232 Score = 157 bits (398), Expect = 8e-37, Method: Composition-based stats. Identities = 51/225 (22%), Positives = 92/225 (40%), Gaps = 9/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + + +G S+ + D+ ++ L Sbjct: 5 LIVEDETTLAETLRYNLEREGYSVIVAGDGVQGLDRARRDQPDLVVLDIML--PRLDGFS 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + RI+R S VP+I ++ + + G DD + KP E LARV AI RR + Sbjct: 63 VCRILRQESDVPIIMLTARQDEVDRIAGLELGADDYMGKPFSLGEFLARVRAILRRSERQ 122 Query: 123 NNRAETG-----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + IRV + R G+ LP++E +L LM NRG + + + + Sbjct: 123 PHSIVREVLEAGAIRVDTSSRRAWRNGQELNLPQKEFDLLTCLMRNRGIALTRDLLLERV 182 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 +G D + V+ HI LR+K+ + + + R +GY + Sbjct: 183 WGQ-DFIGDSRTVDVHIRWLREKIEPDPGKPVYIQTVRGVGYRFE 226 >gi|300087391|ref|YP_003757913.1| winged helix family two component transcriptional regulator [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527124|gb|ADJ25592.1| two component transcriptional regulator, winged helix family [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 229 Score = 157 bits (398), Expect = 8e-37, Method: Composition-based stats. Identities = 47/223 (21%), Positives = 89/223 (39%), Gaps = 6/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD + D A +G + E + R D+ ++ Sbjct: 7 ILVIDDERKIIDIVRAYLEKEGYRVLTATDGEAGLKVWRQERPDLVVLDLM--MPKLSGN 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119 ++ RIIR S+ P+I ++ L + + G DD V KP RE+ + Sbjct: 65 DVCRIIRQESETPVIMLTARDELTDKIVGLELGADDYVTKPFEGRELVARIKAVLRRTEH 124 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + G + V + R ++ G+V L E +L+ + AN G+ ++++I + G Sbjct: 125 RTFAPVLRVGELTVDVERRQADIGGKVIELTTTEFDLLKLMAANPGRVFSRSEILDRLQG 184 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221 E ++SHI LR+K+ + + GY ++ Sbjct: 185 DT-YEGYERTIDSHIKNLRRKIEPDPDRPSYIQTVYGAGYRLE 226 >gi|293189436|ref|ZP_06608156.1| DNA-binding response regulator [Actinomyces odontolyticus F0309] gi|292821526|gb|EFF80465.1| DNA-binding response regulator [Actinomyces odontolyticus F0309] Length = 227 Score = 157 bits (398), Expect = 8e-37, Method: Composition-based stats. Identities = 43/221 (19%), Positives = 88/221 (39%), Gaps = 6/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + ++G + D+ ++ L G Sbjct: 5 ILVVDDDVALAEMIGIVLQNEGYEVVSCADGSAALTQFQEHNPDLVLLDVML--PGMDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R IR S P++ ++ + ++G DD V KP +E++ARV A R + Sbjct: 63 DVCRAIRRVSDAPIVMLTARSDTSDVVTGLEAGADDYVPKPFKPKELVARVRARLRGRED 122 Query: 122 SNNRAETGPIR--VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S + G + +G V L E +L L + K ++ ++ ++G Sbjct: 123 SQADEGLSLQDLSIDVAGHIVKREGRVIALTPLEFDLLVTLARSPWKVFSREELLEQVWG 182 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219 + A + +V H+ +LR K+ + V + R +GY Sbjct: 183 -YRHAADTRLVNVHVQRLRSKIERDPERPELVVTVRGVGYR 222 >gi|229099893|ref|ZP_04230816.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock3-29] gi|229106054|ref|ZP_04236673.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock3-28] gi|229118956|ref|ZP_04248301.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock1-3] gi|228664481|gb|EEL19977.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock1-3] gi|228677373|gb|EEL31631.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock3-28] gi|228683508|gb|EEL37463.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock3-29] Length = 234 Score = 157 bits (398), Expect = 8e-37, Method: Composition-based stats. Identities = 52/227 (22%), Positives = 101/227 (44%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + + + + + D+ ++ L G+ L Sbjct: 5 ILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIML--PGKDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR +S++P+I ++ S + + G DD V KP RE+LARV A RR + Sbjct: 63 EVCREIRKNSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQ 122 Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N GPI + + + E L RE +L YL + G+ + + + Sbjct: 123 GGAAEKEENTEMVIGPIIINPNAYSVTKREENIELTHREFELLHYLAKHLGQVMTREHLL 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++G +D + V+ + +LR+K+ + + ++R +GY + Sbjct: 183 QTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGYYL 228 >gi|320159586|ref|YP_004172810.1| OmpR family two-component response regulator [Anaerolinea thermophila UNI-1] gi|319993439|dbj|BAJ62210.1| OmpR family two-component response regulator [Anaerolinea thermophila UNI-1] Length = 238 Score = 157 bits (398), Expect = 8e-37, Method: Composition-based stats. Identities = 43/236 (18%), Positives = 94/236 (39%), Gaps = 19/236 (8%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D +++ G ++ L + ++ ++ L G Sbjct: 5 ILVVEDERALQETLEYNLKRQGYEVQVAGDGILALDLAREFQPEIILLDVML--PGMDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL R +R P++ ++ + + G DD + KP RE+LARV A+ RR+++ Sbjct: 63 ELCRRLRQEMNTPVLMLTARTEEIDRVVGLEVGADDYMTKPFSMRELLARVKAMLRRVRM 122 Query: 122 SNNRAETGPIRVFSDGRDP---------------EVQGEVFPLPRRERRILEYLMANRGK 166 + + + G V + +E +L +LM +RG+ Sbjct: 123 IREEMQKSEESTQKESEKRLLSGNLELNLARREVRLNGVVVAVKPKEFELLHFLMKHRGQ 182 Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 +++ + ++G +D + V+ HI LR+K+ + + + R GY + Sbjct: 183 VLSRDYLLKELWG-WDYFGDSRTVDVHIRWLREKIEPDPAHPVRIVTVRGAGYRFE 237 >gi|289579246|ref|YP_003477873.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter italicus Ab9] gi|289528959|gb|ADD03311.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter italicus Ab9] Length = 231 Score = 157 bits (398), Expect = 8e-37, Method: Composition-based stats. Identities = 42/225 (18%), Positives = 86/225 (38%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++DD + + + +G S+ + + D+ ++ L G Sbjct: 5 IFVVDDEIKILEVVKSYLEREGFSVITETNGNNVLDTFKKEKPDLVILDLML--PGISGE 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116 EL + IR S VP++ ++ ++ F G DD + KP RE++ R Sbjct: 63 ELCKRIRQFSNVPILMLTAKVQESDKINGFSIGADDYLTKPFSPRELVMRVKAILRRTND 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + V + +G V L E +IL++L+ N + + ++ Sbjct: 123 DVPLAEVISFNNDDLVVDFKAHTVKKKGVVVNLTPNEFKILKFLIRNPNRVFTREELIEK 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 + G FD + +++HI LR+K+ + + + +GY Sbjct: 183 VMG-FDYEGYDRTIDAHIKNLRQKIEDDTKNPMYIKTVYGVGYKF 226 >gi|218134296|ref|ZP_03463100.1| hypothetical protein BACPEC_02189 [Bacteroides pectinophilus ATCC 43243] gi|217991671|gb|EEC57677.1| hypothetical protein BACPEC_02189 [Bacteroides pectinophilus ATCC 43243] Length = 234 Score = 157 bits (398), Expect = 9e-37, Method: Composition-based stats. Identities = 49/233 (21%), Positives = 98/233 (42%), Gaps = 14/233 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD L+ G DG+ ++ E + + D+ ++ L + Sbjct: 5 ILVVDDEKLIVKGIRFSLLQDGMEVDCAYDGEEALEMIKTNTYDMVLLDLML--PKIDGI 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + +R S VP+I ++ + + G DD + KP + E+ AR+ AI+RR Sbjct: 63 AVCQQVREFSNVPIIMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARMKAIFRRSGG 122 Query: 122 SNNRAETGPIRV----------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 S + D R ++ G L +E ++E L +N GK ++ Sbjct: 123 SESEGRQSEAARKVISSGSLKLDCDARTLQISGREIYLTAKEFDLMELLASNPGKVYSRE 182 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223 + + ++G +D + V+ H+ +LR+K+ N + +K +GY N Sbjct: 183 SLLNTVWG-YDYPGDVRTVDVHVRRLREKVEPNASDPKYIQTKWGVGYYFGQN 234 >gi|297191203|ref|ZP_06908601.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|197718520|gb|EDY62428.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 244 Score = 157 bits (398), Expect = 9e-37, Method: Composition-based stats. Identities = 50/229 (21%), Positives = 94/229 (41%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V + G +++ L + R D+ ++ L G L Sbjct: 15 ILVVDDDPTVAEVVTGYLERAGFAVDRAADGPQALRLAAGRRPDLVVLDLML--PGMDGL 72 Query: 62 ELPRIIR--AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 E+ R +R ++VP+I ++ + + G DD V KP RE++ RV ++ RR Sbjct: 73 EVCRRLRAGEQARVPVIMLTARGDEDDRILGLEVGADDYVTKPFSPRELVLRVESVLRRG 132 Query: 120 KVSNNRAETGP------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 GP I + R G L RE +L +LM + G+ + + ++ Sbjct: 133 GGGAGERRAGPELAAAGIVLDPGARRATKDGHELALTLREFDLLAHLMRHPGEAIGRERL 192 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221 ++G E + + V H+ +LR K+ + + + +GY D Sbjct: 193 MQDVWGW--EFGDLSTVTVHVRRLRGKIEDDPARPRLIQTVWGVGYRFD 239 >gi|219667295|ref|YP_002457730.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219537555|gb|ACL19294.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 234 Score = 157 bits (398), Expect = 9e-37, Method: Composition-based stats. Identities = 44/227 (19%), Positives = 92/227 (40%), Gaps = 8/227 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 +L++D A++++ +G ++ L + + D+ ++ L G V Sbjct: 4 ILLVEDDAVIQELVTYNLEREGYTVMIAEEGNKALELLNKEKPDLVLLDVMLPELDGLDV 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R + + +PLI +S + + + G DD + KP RE+LAR+ A R + Sbjct: 64 CKKIRGNQETANIPLIMLSARDEVADRVIGLELGADDYITKPFSPRELLARIKARLREER 123 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGE----VFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 ++ + L +E +L M + ++ + Sbjct: 124 RNSTPPPLSLTWGDLEIWPESYMVTIKGEQVTLTGKEFELLHIFMKRPNQVFSREYLLQK 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 ++G + + + V+ HIS LR KL++ ++S R +GY + N Sbjct: 184 VWG-YTVSGDTRTVDVHISNLRSKLKSVS--PIIESVRGVGYRLAVN 227 >gi|253579947|ref|ZP_04857215.1| two component transcriptional regulator [Ruminococcus sp. 5_1_39B_FAA] gi|251848946|gb|EES76908.1| two component transcriptional regulator [Ruminococcus sp. 5_1_39BFAA] Length = 230 Score = 157 bits (398), Expect = 9e-37, Method: Composition-based stats. Identities = 48/225 (21%), Positives = 95/225 (42%), Gaps = 10/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD L+ G DG+ ++ E + D+ ++ L LE Sbjct: 6 LVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEAVEKAKDKKYDIILLDLML--PKMDGLE 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH------HREILARVAAIY 116 + + IR S VP++ ++ + + G DD + KP + + + R A Sbjct: 64 VCQQIREFSNVPIVMLTAKGEDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRAGSD 123 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 K + G +R+ +GR + G+ L +E +LE L+ N K ++ + + Sbjct: 124 HEEKEKAKSIQVGDLRMDCEGRRVFIAGKEINLTAKEFDVLELLVFNPNKVYSRENLLNI 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++G ++ + V+ HI +LR+K+ N V +K +GY Sbjct: 184 VWG-YEYPGDVRTVDVHIRRLREKIETNPSEPKYVHTKWGVGYYF 227 >gi|313900973|ref|ZP_07834463.1| response regulator receiver domain protein [Clostridium sp. HGF2] gi|312954393|gb|EFR36071.1| response regulator receiver domain protein [Clostridium sp. HGF2] Length = 239 Score = 157 bits (397), Expect = 9e-37, Method: Composition-based stats. Identities = 41/229 (17%), Positives = 81/229 (35%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ L ++G +E E D+ I ++ Sbjct: 15 ILIVDDNQEIREVVTVLLENEGYEVEEAGDGEAAVAKAE----DMDLIILDVMMPKMDGF 70 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARVA 113 + R IR + P++ ++ Q F SG DD + KP + E+ Sbjct: 71 KACRQIREVTNAPILFLTAKTMDQDKALGFSSGGDDYLAKPFSYNELIARVKALLRRYCI 130 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + ++ + + + + + E L E +IL L + K + ++ Sbjct: 131 YKGKEEPQEGDQIIMHDLIISRNSNQVKKKEEAVNLTEMEYQILLLLADHPKKIFSNQEL 190 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 + AI+ N + HI LRKKL + + + GY D Sbjct: 191 YEAIWKGPYMYSANNTIMVHIRNLRKKLGVDPQNPVYIKTVWGKGYRFD 239 >gi|22299907|ref|NP_683154.1| two-component response regulator [Thermosynechococcus elongatus BP-1] gi|22296092|dbj|BAC09916.1| two-component response regulator [Thermosynechococcus elongatus BP-1] Length = 251 Score = 157 bits (397), Expect = 9e-37, Method: Composition-based stats. Identities = 48/228 (21%), Positives = 97/228 (42%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++ G ++ E + D+ ++ Sbjct: 12 ILVVDDEASIRRILETRLSMIGYTVVTAADGEEALTKFRQEQPDLVVLDVM--MPKLDGY 69 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + +R S VP+I ++ + + + G DD V KP +E+ AR+ ++ RR++ Sbjct: 70 GVCQELRKESDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRIEK 129 Query: 122 SNN-------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 ++ + G IR+ ++ R E L E +LE L+ G+ ++ +I Sbjct: 130 TSTSGIPSSGVIQVGNIRIDTNKRQVYKGDERIRLTGMEFMLLELLVGRSGEPFSRAEIL 189 Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220 ++G + V+ VV+ HIS+LR KL + + + + R GY Sbjct: 190 EQVWGYTPERHVDTRVVDVHISRLRAKLEEDPSNPELILTARGTGYLF 237 >gi|30265484|ref|NP_847861.1| DNA-binding response regulator YycF [Bacillus anthracis str. Ames] gi|42784660|ref|NP_981907.1| DNA-binding response regulator YycF [Bacillus cereus ATCC 10987] gi|47531052|ref|YP_022401.1| DNA-binding response regulator YycF [Bacillus anthracis str. 'Ames Ancestor'] gi|47568665|ref|ZP_00239362.1| response regulator [Bacillus cereus G9241] gi|49188303|ref|YP_031556.1| DNA-binding response regulator YycF [Bacillus anthracis str. Sterne] gi|49480468|ref|YP_039456.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52145274|ref|YP_086731.1| response regulator [Bacillus cereus E33L] gi|65317447|ref|ZP_00390406.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bacillus anthracis str. A2012] gi|118480494|ref|YP_897645.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|165872537|ref|ZP_02217170.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0488] gi|167636251|ref|ZP_02394554.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0442] gi|167641448|ref|ZP_02399698.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0193] gi|170689182|ref|ZP_02880379.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0465] gi|170708658|ref|ZP_02899097.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0389] gi|177651874|ref|ZP_02934457.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0174] gi|190568892|ref|ZP_03021794.1| DNA-binding response regulator YycF [Bacillus anthracis Tsiankovskii-I] gi|196036153|ref|ZP_03103553.1| DNA-binding response regulator YycF [Bacillus cereus W] gi|196041965|ref|ZP_03109252.1| DNA-binding response regulator YycF [Bacillus cereus NVH0597-99] gi|196045552|ref|ZP_03112783.1| DNA-binding response regulator YycF [Bacillus cereus 03BB108] gi|206975866|ref|ZP_03236777.1| DNA-binding response regulator YycF [Bacillus cereus H3081.97] gi|217962959|ref|YP_002341537.1| DNA-binding response regulator YycF [Bacillus cereus AH187] gi|218906658|ref|YP_002454492.1| DNA-binding response regulator YycF [Bacillus cereus AH820] gi|222098943|ref|YP_002533001.1| DNA-binding response regulator yycf [Bacillus cereus Q1] gi|225867447|ref|YP_002752825.1| DNA-binding response regulator YycF [Bacillus cereus 03BB102] gi|227818235|ref|YP_002818244.1| DNA-binding response regulator YycF [Bacillus anthracis str. CDC 684] gi|229604878|ref|YP_002869675.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0248] gi|254687093|ref|ZP_05150951.1| DNA-binding response regulator YycF [Bacillus anthracis str. CNEVA-9066] gi|254724124|ref|ZP_05185909.1| DNA-binding response regulator YycF [Bacillus anthracis str. A1055] gi|254735141|ref|ZP_05192851.1| DNA-binding response regulator YycF [Bacillus anthracis str. Western North America USA6153] gi|254742150|ref|ZP_05199837.1| DNA-binding response regulator YycF [Bacillus anthracis str. Kruger B] gi|254755940|ref|ZP_05207972.1| DNA-binding response regulator YycF [Bacillus anthracis str. Vollum] gi|254761652|ref|ZP_05213672.1| DNA-binding response regulator YycF [Bacillus anthracis str. Australia 94] gi|301056940|ref|YP_003795151.1| DNA-binding response regulator YycF [Bacillus anthracis CI] gi|30260162|gb|AAP29347.1| DNA-binding response regulator YycF [Bacillus anthracis str. Ames] gi|42740592|gb|AAS44515.1| DNA-binding response regulator YycF [Bacillus cereus ATCC 10987] gi|47506200|gb|AAT34876.1| DNA-binding response regulator YycF [Bacillus anthracis str. 'Ames Ancestor'] gi|47554653|gb|EAL13007.1| response regulator [Bacillus cereus G9241] gi|49182230|gb|AAT57606.1| DNA-binding response regulator YycF [Bacillus anthracis str. Sterne] gi|49332024|gb|AAT62670.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51978743|gb|AAU20293.1| response regulator [Bacillus cereus E33L] gi|118419719|gb|ABK88138.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|164711760|gb|EDR17304.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0488] gi|167510623|gb|EDR86019.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0193] gi|167528366|gb|EDR91137.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0442] gi|170126440|gb|EDS95328.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0389] gi|170666825|gb|EDT17591.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0465] gi|172082578|gb|EDT67642.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0174] gi|190559959|gb|EDV13942.1| DNA-binding response regulator YycF [Bacillus anthracis Tsiankovskii-I] gi|195991320|gb|EDX55288.1| DNA-binding response regulator YycF [Bacillus cereus W] gi|196023759|gb|EDX62435.1| DNA-binding response regulator YycF [Bacillus cereus 03BB108] gi|196027220|gb|EDX65840.1| DNA-binding response regulator YycF [Bacillus cereus NVH0597-99] gi|206745960|gb|EDZ57356.1| DNA-binding response regulator YycF [Bacillus cereus H3081.97] gi|217065926|gb|ACJ80176.1| DNA-binding response regulator YycF [Bacillus cereus AH187] gi|218539027|gb|ACK91425.1| DNA-binding response regulator YycF [Bacillus cereus AH820] gi|221243002|gb|ACM15712.1| DNA-binding response regulator YycF [Bacillus cereus Q1] gi|225788895|gb|ACO29112.1| DNA-binding response regulator YycF [Bacillus cereus 03BB102] gi|227004085|gb|ACP13828.1| DNA-binding response regulator YycF [Bacillus anthracis str. CDC 684] gi|229269286|gb|ACQ50923.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0248] gi|300379109|gb|ADK08013.1| DNA-binding response regulator YycF [Bacillus cereus biovar anthracis str. CI] gi|324329417|gb|ADY24677.1| DNA-binding response regulator YycF [Bacillus thuringiensis serovar finitimus YBT-020] Length = 235 Score = 157 bits (397), Expect = 9e-37, Method: Composition-based stats. Identities = 52/227 (22%), Positives = 100/227 (44%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + + + + + D+ ++ L G+ L Sbjct: 6 ILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKATEEQPDMVLLDIML--PGKDGL 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR S++P+I ++ S + + G DD V KP RE+LARV A RR + Sbjct: 64 EVCREIRKSSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQ 123 Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N GPI + + + E L RE +L YL + G+ + + + Sbjct: 124 GGAAEKEENTEMVIGPIVINPNAYSVTKREENIELTHREFELLHYLAKHLGQVMTREHLL 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++G +D + V+ + +LR+K+ + + ++R +GY + Sbjct: 184 QTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGYYL 229 >gi|37520429|ref|NP_923806.1| two-component response regulator [Gloeobacter violaceus PCC 7421] gi|35211423|dbj|BAC88801.1| two-component response regulator [Gloeobacter violaceus PCC 7421] Length = 238 Score = 157 bits (397), Expect = 9e-37, Method: Composition-based stats. Identities = 35/223 (15%), Positives = 75/223 (33%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D L+ + G + L R D+ ++ L G L Sbjct: 14 ILVVEDDPLILETIRRYLEHAGHRCHCAADGWEADRLALRHRPDLVVLDWML--PGVDGL 71 Query: 62 ELP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDV--VNKPIHHREILARVAAIYRR 118 L R + P++ ++ + G DD + Sbjct: 72 ALCERWRKGEYFAPVLMLTARTEEDHRVRALAGGADDYLDKPFSAKELVARVQALLRRAY 131 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + + V + R ++ G L RE +L L + G+ ++ ++ ++ Sbjct: 132 ASGYRDCSPKNGLLVDRNTRQVQLHGRPIDLRAREFDLLAQLADHPGRVYSRDELLERVW 191 Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 G +D ++ H+ KLR+KL + V + +GY Sbjct: 192 G-YDFEGGHRTIDVHVRKLREKLEPDPTRPVYVLTVWGVGYKF 233 >gi|158320763|ref|YP_001513270.1| two component transcriptional regulator [Alkaliphilus oremlandii OhILAs] gi|158140962|gb|ABW19274.1| two component transcriptional regulator, winged helix family [Alkaliphilus oremlandii OhILAs] Length = 229 Score = 157 bits (397), Expect = 9e-37, Method: Composition-based stats. Identities = 51/225 (22%), Positives = 99/225 (44%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD L+ G DG + E A D+ ++ L L Sbjct: 5 ILIVDDEPLLVKGLKYSLEQDGYEILTAFDGEEALEKAKIANADLILLDLML--PKIDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + IR +SQ P+I ++ + + + G DD + KP + E+ AR+ A+ RR + Sbjct: 63 QVCQQIRLNSQTPIIMLTAKGEDMSKILGLEYGADDYLTKPFNILELKARIKAVLRRYQS 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQG-----EVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 S+ E I++ + + E L +E +L L +N GK ++ ++ Sbjct: 123 SDKPIEERVIKIDDFKINTLGRKVSLKGEEVNLTAKEFDLLLLLASNPGKIYSREELLEI 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 I+G ++ + V+ HI +LR+K+ N + + +K +GY Sbjct: 183 IWG-YEYFGDLRTVDVHIRRLREKIEINSSNPEYILTKWGVGYYF 226 >gi|187778177|ref|ZP_02994650.1| hypothetical protein CLOSPO_01769 [Clostridium sporogenes ATCC 15579] gi|187775105|gb|EDU38907.1| hypothetical protein CLOSPO_01769 [Clostridium sporogenes ATCC 15579] Length = 239 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 47/226 (20%), Positives = 87/226 (38%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D A +G + E L + ++ L Sbjct: 13 ILVVDDEERILDVVKAYLEKEGYEVITAMDGEEAIKLFKEISFHLVILDLML--PKLSGE 70 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ IR S VP+I ++ + L+ G DD + KP RE++ARV A+ RR Sbjct: 71 EVCSKIRESSNVPIIMLTAKVEEEDKLEGLSIGADDYLTKPFSVRELVARVKALIRRAYR 130 Query: 122 SNNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 I +G V L E ++L L+ N G+ + Q+ Sbjct: 131 GKYPLAEHLILNDGDLEVDIRKMKVLKKGNVVTLTPYEFKVLVSLLTNPGQVFTREQLVE 190 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 +G +D + V+++I +R+K+ + + + + +GY Sbjct: 191 QAFG-YDYESFDRTVDTYIKNIRQKIEDNPKAPNYITTVYGVGYRF 235 >gi|168182895|ref|ZP_02617559.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|237794337|ref|YP_002861889.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] gi|182673952|gb|EDT85913.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|229263491|gb|ACQ54524.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] Length = 233 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 45/226 (19%), Positives = 87/226 (38%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D A +G + E L + ++ L Sbjct: 7 ILVVDDEVRILDVVKAYLEKEGYEVITAMDGEEAIKLFKEISFHLVILDLML--PKLSGE 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ IR S VP+I ++ + L+ G DD + KP RE++ARV A+ RR Sbjct: 65 EVCSKIRESSNVPIIMLTAKVEEEEKLEGLSIGADDYLTKPFSVRELVARVKALIRRAYR 124 Query: 122 SNNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 I +G++ + E ++L L+ N G+ + Q+ Sbjct: 125 GKYPLAEHLILNDGDLEVDIRKMKVLKKGKMVTITPYEFKVLVSLLTNPGQVFTREQLVE 184 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 +G +D V+++I +R+K+ + + + + +GY Sbjct: 185 QAFG-YDYESFNRTVDTYIKNIRQKIEDNPKAPNYITTVYGVGYRF 229 >gi|152977665|ref|YP_001377182.1| two component transcriptional regulator [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152026417|gb|ABS24187.1| two component transcriptional regulator, winged helix family [Bacillus cytotoxicus NVH 391-98] Length = 235 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 52/227 (22%), Positives = 100/227 (44%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + + + + + D+ ++ L G+ L Sbjct: 6 ILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIML--PGKDGL 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR S++P+I ++ S + + G DD V KP RE+LARV A RR + Sbjct: 64 EVCREIRKSSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQ 123 Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N GPI + + + E L RE +L YL + G+ + + + Sbjct: 124 GGAAEKEENTEMVIGPIVINPNAYSVTKREESIELTHREFELLHYLAKHLGQVMTREHLL 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++G +D + V+ + +LR+K+ + + ++R +GY + Sbjct: 184 QTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGYYL 229 >gi|298246544|ref|ZP_06970350.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297554025|gb|EFH87890.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 244 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 53/243 (21%), Positives = 96/243 (39%), Gaps = 25/243 (10%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A++ + G + S R D+ ++ L G L Sbjct: 5 ILVVDDEAVLAETIAYNLEQAGYHVITAADGNSALDAARSERPDLIVLDIML--PGMDGL 62 Query: 62 ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 E+ R +R ++ P++ ++ + + G DD V KP RE+LARV A+ RR Sbjct: 63 EVCRQLRRENKTATTPILMLTARGDEIDKVVGLEVGADDYVTKPFGRRELLARVRALIRR 122 Query: 119 LKVSNNRAETGPI------------------RVFSDGRDPEVQGEVFPLPRRERRILEYL 160 R+ GR +G+ L ++ +L YL Sbjct: 123 SDYVPGGEGENGEEPEQERRSANRELVAGPLRIDLAGRRVNCRGQDIELQPKQFELLAYL 182 Query: 161 MANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYS 219 + NRG + + Q+ ++G +D + V+ H+ LR+KL + + + R +GY Sbjct: 183 VRNRGTVLTRDQLLHNVWG-YDYVGDTRTVDVHVRWLREKLEEDPANPKLIQTVRGVGYV 241 Query: 220 IDW 222 W Sbjct: 242 FRW 244 >gi|218900607|ref|YP_002449018.1| DNA-binding response regulator YycF [Bacillus cereus G9842] gi|218545115|gb|ACK97509.1| DNA-binding response regulator YycF [Bacillus cereus G9842] Length = 235 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 52/227 (22%), Positives = 100/227 (44%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + + + + + D+ ++ L G+ L Sbjct: 6 ILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIML--PGKDGL 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR S++P+I ++ S + + G DD V KP RE+LARV A RR + Sbjct: 64 EVCREIRKSSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQ 123 Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N GPI + + + E L RE +L YL + G+ + + + Sbjct: 124 GGSAEKEENTEMVIGPIVINPNAYSVTKREENIELTHREFELLHYLAKHLGQVMTREHLL 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++G +D + V+ + +LR+K+ + + ++R +GY + Sbjct: 184 QTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGYYL 229 >gi|229825123|ref|ZP_04451192.1| hypothetical protein GCWU000182_00474 [Abiotrophia defectiva ATCC 49176] gi|229790495|gb|EEP26609.1| hypothetical protein GCWU000182_00474 [Abiotrophia defectiva ATCC 49176] Length = 229 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 46/226 (20%), Positives = 92/226 (40%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD L+ G DG+ ++ E + S D+ ++ L Sbjct: 5 ILVVDDEKLIVKGIRFGLEQDGMEVDAAYDGEEALEMVKSCAYDIILLDLML--PKMNGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH------HREILARVAAI 115 E+ + IR S VP+I ++ + + G DD + KP + + + R Sbjct: 63 EVCQQIREFSDVPIIMLTAKGEDIDKIMGLEYGADDYMTKPFNILEVKARIKAILRRNEK 122 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + +K S + G + + +GR + L +E +LE L+ + K ++ ++ Sbjct: 123 NKVVKESTGKTLYGELGIDFEGRRVYINDNEINLTAKEFDLLELLVKDENKVYSREKLLD 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 I+G D + V+ HI +LR+K+ + +K +GY Sbjct: 183 IIWG-SDYPGDVRTVDVHIRRLREKIEETPGEPRYIHTKWGVGYYF 227 >gi|187777475|ref|ZP_02993948.1| hypothetical protein CLOSPO_01043 [Clostridium sporogenes ATCC 15579] gi|187774403|gb|EDU38205.1| hypothetical protein CLOSPO_01043 [Clostridium sporogenes ATCC 15579] Length = 228 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 37/223 (16%), Positives = 88/223 (39%), Gaps = 7/223 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + + G + + + D+ ++ L ++ Sbjct: 9 LVVDDDENIAEVIKMYLENSGYDTRVCYDGKEAQEGFLEYKPDLVLLDIML--PHIDGVD 66 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRRL 119 + + IR S +P+I ++ + + G DD + KP +E + V Y Sbjct: 67 VLKWIRKDSTIPIIMLTAKGDTFDKVLALELGADDYIVKPFEPKELLARVKAVLRRYNVD 126 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + V + + + +P +E +L YL N+ + + Q+ ++G Sbjct: 127 NENKEALNFEQLTVDVNSYTVVYKNKEIKMPPKEFELLYYLAKNKNRVFTREQLLCEVWG 186 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D + V+ HI +LR+KL ++ +++ +GY + Sbjct: 187 -YDYPGDSRTVDVHIKRLREKLEGGPNWE-IETVWGVGYKFEV 227 >gi|288956869|ref|YP_003447210.1| two-component response regulator [Azospirillum sp. B510] gi|288909177|dbj|BAI70666.1| two-component response regulator [Azospirillum sp. B510] Length = 248 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 40/222 (18%), Positives = 82/222 (36%), Gaps = 4/222 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61 ++++D A + +G + + E + ++ L G +V Sbjct: 24 LIVEDEADILTLLKYNLEKEGFRVATASDGEEALLAAGEQTPHIVLLDWMLPLMSGLEVC 83 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119 R +P+I ++ + +SG DD + KP E+ R Sbjct: 84 RQLRRNAKTRDIPIIMLTARGEEGDRVRGLNSGADDYITKPFSPTELVARMRAVLRRASP 143 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +++ + + L E R+L + M + G+ ++ Q+ ++G Sbjct: 144 GMTDEVLTFADVTMDLAAHRVRRNSRDVHLGPTEFRLLRHFMQHPGRVFSREQLLDLVWG 203 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D VE V+ HI +LRK + + D + + R GY++D Sbjct: 204 -HDVYVEPRTVDVHIRRLRKAMNEEDELDLIRTVRSAGYALD 244 >gi|212639803|ref|YP_002316323.1| OmpR family transcriptional regulator (REC-wHTH) [Anoxybacillus flavithermus WK1] gi|212561283|gb|ACJ34338.1| Transcriptional regulator OmpR family (REC-wHTH) [Anoxybacillus flavithermus WK1] Length = 223 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 45/223 (20%), Positives = 85/223 (38%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ +G + + E + D+ ++ Sbjct: 4 ILIVDDEKEMRELLRLYLEPEGFTCIEADDGEAGLAEFGRKQIDLILLDIM--MPKLDGY 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119 +R SQVP+I ++ + G DD + KP E++ARV A + Sbjct: 62 RFCMHVRERSQVPIIFLTARSDEWDRVYGLQIGADDYIVKPFSPNEVVARVHAVLRRTKG 121 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 E GPI + R +V G+ L +E +L + +RG+ + Q+ ++G Sbjct: 122 TDVTTSYEAGPIVIDEKARKVKVNGKPVVLTLKEFELLTLFVKHRGQVFTREQLLDRVWG 181 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + V++HI LR KL + + +GY D Sbjct: 182 IH-YVGSTRTVDTHIKTLRIKLGEAG--QYIQTVWGVGYKFDE 221 >gi|78044944|ref|YP_360245.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans Z-2901] gi|77997059|gb|ABB15958.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans Z-2901] Length = 228 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 54/226 (23%), Positives = 105/226 (46%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L+DD +++ +G + + S + D+ ++ L + Sbjct: 4 ILLVDDEEKIREVLRLYLEKEGFLVLEAQDGKEALKRFSEHKIDLIILDLML--PEIDGM 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IR S VP+I ++ + + G DD V KP RE++ARV A+ RR Sbjct: 62 EIAKEIRKTSLVPIIMLTARGEEIDKILGLEIGADDYVVKPFSPREVVARVKAVLRRSSG 121 Query: 122 SNNR-----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + G + + + R+ +V GE L E +L YL+ NRGK +++ Q+ + Sbjct: 122 IPEKEASSVIKQGILEIHPEAREVKVNGEEVVLTPLEFDLLLYLVTNRGKALSREQLLAN 181 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 ++G +D E V++H+++LR+KL+ + + +GY + Sbjct: 182 VWG-YDYFGEARTVDTHVTRLREKLQE--AASYIKTVWGVGYKFEV 224 >gi|309792673|ref|ZP_07687126.1| two component transcriptional regulator, winged helix family [Oscillochloris trichoides DG6] gi|308225301|gb|EFO79076.1| two component transcriptional regulator, winged helix family [Oscillochloris trichoides DG6] Length = 256 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 40/231 (17%), Positives = 82/231 (35%), Gaps = 15/231 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D +++ + +G + + R D+ ++ L G Sbjct: 23 ILIVEDEVPIQNVLSSYLRAEGYRVYTAKDGASALSQMWAVRPDLVILDIML--PGMDGF 80 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI-----------LA 110 E+ R I+ V ++ ++ L G DD + KP RE+ Sbjct: 81 EVCRRIQQDFDVYILFLTARSEEVDKLIGLSIGADDYLTKPFSPRELTARVKTILRRSRT 140 Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 ++ + + GE L RE +L L G+ + Sbjct: 141 PGPRVHTHQPIERPALRFEQFTIDPGCYTVWRDGEAIILTPREFDLLYVLAEYAGRVCNR 200 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 Q+ I+G + A + VV+ HI +LR+K+ + + + R +GY + Sbjct: 201 DQLLERIWG-SNFAGIDRVVDVHIKQLRRKIEVDPSNPQIIQTLRGVGYRL 250 >gi|284047340|ref|YP_003397680.1| two component transcriptional regulator [Conexibacter woesei DSM 14684] gi|283951561|gb|ADB54305.1| two component transcriptional regulator, winged helix family [Conexibacter woesei DSM 14684] Length = 237 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 47/226 (20%), Positives = 89/226 (39%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L+DD ++ DG + D+ ++ L L Sbjct: 8 ILLVDDEQSIQALLSYPLRRDGYEVVQATDGREALARFEERPFDLVVLDVML--PQLDGL 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R+ S VP+I ++ + + G DD + KP RE +RV A RR ++ Sbjct: 66 EVCRRLRSRSSVPIIMLTAKSEEIDKVVGLEIGADDYITKPFSMREFRSRVKAALRRSEL 125 Query: 122 SNNRAET------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 S + +R+ D R ++GE E IL L + G+ + + + Sbjct: 126 SRSAERDGGSLDVHELRIDPDKRTVSLRGEAITTTFVEFEILLTLARSPGRVFTRDMLLA 185 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++G + ++ HI LR+K+ + + + + R +GY Sbjct: 186 RVWGDSAY-RDPRTIDVHIRHLREKIERDAKEPEYLFTVRGVGYRF 230 >gi|260577913|ref|ZP_05845843.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC 43734] gi|258603933|gb|EEW17180.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC 43734] Length = 228 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 41/221 (18%), Positives = 88/221 (39%), Gaps = 6/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + +G D+ ++ L G + Sbjct: 8 ILVVDDDPAIAEMLTIVLQGEGFRTVVVGDGVEAVKAAEEHNPDLILLDVML--PGMNGI 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + IR S VP++ ++ + +SG DD V+KP +E++ARV A RR Sbjct: 66 DVCKAIRETSTVPIVMLTARTDTVDVVLGLESGADDYVHKPFKPKELVARVRARLRRTPE 125 Query: 122 SNNRAETGPIR--VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + G G+ L E +L L + + ++ ++ ++G Sbjct: 126 EAPAETIEVVDLKIDVPGHQVIRDGQEIALTPIEFDLLVTLASRPRQVFSREELLEQVWG 185 Query: 180 LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219 + ++ + +V HI +LR K+ + + + R +GY Sbjct: 186 -YRKSSDTRLVNVHIQRLRSKVERDPDDPKIIQTVRGIGYK 225 >gi|30023491|ref|NP_835122.1| two-component response regulator yycF [Bacillus cereus ATCC 14579] gi|206970303|ref|ZP_03231256.1| DNA-binding response regulator YycF [Bacillus cereus AH1134] gi|218232846|ref|YP_002370241.1| DNA-binding response regulator YycF [Bacillus cereus B4264] gi|228961729|ref|ZP_04123333.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar pakistani str. T13001] gi|229153624|ref|ZP_04281801.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus m1550] gi|229181712|ref|ZP_04309035.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus 172560W] gi|296505894|ref|YP_003667594.1| two-component response regulator yycF [Bacillus thuringiensis BMB171] gi|29899052|gb|AAP12323.1| Two-component response regulator yycF [Bacillus cereus ATCC 14579] gi|206734880|gb|EDZ52049.1| DNA-binding response regulator YycF [Bacillus cereus AH1134] gi|218160803|gb|ACK60795.1| DNA-binding response regulator YycF [Bacillus cereus B4264] gi|228601745|gb|EEK59243.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus 172560W] gi|228629853|gb|EEK86505.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus m1550] gi|228797964|gb|EEM44973.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar pakistani str. T13001] gi|296326946|gb|ADH09874.1| two-component response regulator yycF [Bacillus thuringiensis BMB171] gi|326943264|gb|AEA19160.1| two-component response regulator yycF [Bacillus thuringiensis serovar chinensis CT-43] Length = 235 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 52/227 (22%), Positives = 100/227 (44%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + + + + + D+ ++ L G+ L Sbjct: 6 ILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIML--PGKDGL 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR S++P+I ++ S + + G DD V KP RE+LARV A RR + Sbjct: 64 EVCREIRKSSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQ 123 Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N GPI + + + E L RE +L YL + G+ + + + Sbjct: 124 GGAAEKEENTEMVIGPIVINPNAYSVTKREENIELTHREFELLHYLAKHLGQVMTREHLL 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++G +D + V+ + +LR+K+ + + ++R +GY + Sbjct: 184 QTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGYYL 229 >gi|172056682|ref|YP_001813142.1| two component transcriptional regulator [Exiguobacterium sibiricum 255-15] gi|171989203|gb|ACB60125.1| two component transcriptional regulator, winged helix family [Exiguobacterium sibiricum 255-15] Length = 228 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 45/225 (20%), Positives = 85/225 (37%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++D ++ + ++ + L + ++ L Sbjct: 8 ILVVDDEAQMRDLLVSNLQKENYQTTTASNGQEALDLMQRDAFHLVLLDVM--MPEMDGL 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117 IR S VP+I ++ + G DD + KP R I A + +R Sbjct: 66 TACMRIREFSNVPIIMLTARSDELDRIHGLKIGADDYITKPFSPRELLARIEATLRRSHR 125 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + G + + ++ R V G+ L R+E +L + N K ++ Q+ I Sbjct: 126 FTVDQSATLTIGKLELDTESRSVHVSGKPISLTRKEFDLLHLFVQNNDKVFSREQLLDQI 185 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +G D V++HI LR KL G + + +GY + Sbjct: 186 WGA-DYIGNLRTVDTHIKTLRLKLGEAGGS--IQTVWGIGYKFEE 227 >gi|218291254|ref|ZP_03495238.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius LAA1] gi|218238856|gb|EED06067.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius LAA1] Length = 230 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 87/224 (38%), Gaps = 10/224 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + +G + + + D+ ++ L Sbjct: 5 ILVVEDEEPIANILRFALEREGYRVSCAYDGAEALQRWRALQPDLILLDVML--PEVDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R IR S VP+I ++ + + G DD V KP RE++ARV A RR Sbjct: 63 DVLRAIRQASGVPVIILTAKDDEVDKVLGLELGADDYVTKPFSTRELVARVKANLRRASD 122 Query: 122 SNNRAETGPIR------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + G+ PL RE ++L L A+ G+ + Q+ Sbjct: 123 VLREHRENERYVVQDLVIDLAEYTVTKAGQPIPLTHREFQVLAVLAAHPGRVFTRDQLVD 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218 ++G D + V+ I +LR+KL + V ++R +GY Sbjct: 183 QVWG-SDYVGDTRAVDVTIRRLREKLEPDPSQPRYVLTRRGVGY 225 >gi|167039421|ref|YP_001662406.1| two component transcriptional regulator [Thermoanaerobacter sp. X514] gi|300915404|ref|ZP_07132717.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter sp. X561] gi|307725255|ref|YP_003905006.1| winged helix family two component transcriptional regulator [Thermoanaerobacter sp. X513] gi|166853661|gb|ABY92070.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter sp. X514] gi|300888464|gb|EFK83613.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter sp. X561] gi|307582316|gb|ADN55715.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter sp. X513] Length = 231 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 47/225 (20%), Positives = 89/225 (39%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++DD + + + +G S+ + + D+ ++ L G Sbjct: 5 IFVVDDEIKILEVVKSYLEHEGFSVITETNGNNVLDTFKKEKPDLVILDLML--PGISGE 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL + +R S VP++ ++ ++ F G DD + KP RE++ RV AI RR Sbjct: 63 ELCKRLRQFSNVPILMLTAKVQESDKINGFSIGADDYITKPFSPRELVMRVKAILRRTTD 122 Query: 122 SNNRAETGPIRVFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 AE +G V L E +IL+ L+ N + + ++ Sbjct: 123 DVPLAEVMSFNNDDLVVDLRAHTVRKKGVVVNLTPNEFKILKILIRNPNRVFTREELIEK 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 + G FD + +++HI LR+K+ + + + +GY Sbjct: 183 VMG-FDYEGYDRTIDAHIKNLRQKIEDDTKNPVYIKTVYGVGYKF 226 >gi|308174605|ref|YP_003921310.1| two-component response regulator [Bacillus amyloliquefaciens DSM 7] gi|307607469|emb|CBI43840.1| two-component response regulator [Bacillus amyloliquefaciens DSM 7] gi|328554528|gb|AEB25020.1| two-component response regulator [Bacillus amyloliquefaciens TA208] gi|328912934|gb|AEB64530.1| two-component response regulator [Bacillus amyloliquefaciens LL3] Length = 239 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 45/233 (19%), Positives = 94/233 (40%), Gaps = 15/233 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + G + + E D+ ++ L + Sbjct: 5 ILVVDDEQSIVTLLQYNLERSGYDVITASDGEEALEQAEKENPDLIVLDVML--PKVDGI 62 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ + +R + P++ ++ + + G DD + KP RE+ ARV AI RR Sbjct: 63 DVCKQLRQQKMMVPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVTARVKAILRRAD 122 Query: 121 VSNNRAETGPIRV----------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 +S+ + + + + E L +E +L YL ++G+ + + Sbjct: 123 ISSLSQGREEEKDGKILIGELKILPEHYEAYFKSEQLELTPKEFELLLYLGKHKGRVLTR 182 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDW 222 + SA++ +D A + +V+ HIS LR K+ + + + R LGY ++ Sbjct: 183 DLLLSAVW-NYDFAGDTRIVDVHISHLRDKIESNTKKPIYIKTIRGLGYKLEE 234 >gi|302388870|ref|YP_003824691.1| two component transcriptional regulator, winged helix family [Thermosediminibacter oceani DSM 16646] gi|302199498|gb|ADL07068.1| two component transcriptional regulator, winged helix family [Thermosediminibacter oceani DSM 16646] Length = 233 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 44/223 (19%), Positives = 94/223 (42%), Gaps = 8/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++ + +G + S E + D+ ++ L G Sbjct: 9 ILVVEDEDSIRRFIVINLKRNGYEVIEAASGEEALMKAMEGKPDLVVLDVML--PGMDGF 66 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH---REILARVAAIYR 117 E+ R++R + +I ++ + + G DD V KP + + V R Sbjct: 67 EVCRLLREKLPDMAVIMLTARGQDIDKIMGLELGADDYVVKPFNPLELTARIRAVLRRIR 126 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + + + +GP + G +GE L RE ++ M N GK ++ +I +A+ Sbjct: 127 KAGLEDEKISSGPFMLDLKGHRVLKKGEELDLTPREFDLMALFMKNPGKAFSRDEILNAV 186 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219 +G D + V+ HI +LR+K+ + G + +++ +GY Sbjct: 187 WGA-DYVGDPKTVDVHIRRLREKVEDDPGRPEYIETVWGIGYR 228 >gi|163943146|ref|YP_001648030.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|229020691|ref|ZP_04177419.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH1273] gi|229026906|ref|ZP_04183230.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH1272] gi|163865343|gb|ABY46402.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] gi|228734409|gb|EEL85079.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH1272] gi|228740606|gb|EEL90876.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH1273] Length = 235 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 53/227 (23%), Positives = 101/227 (44%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + + + + + D+ ++ L G+ L Sbjct: 6 ILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIML--PGKDGL 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR S++P+I ++ S + + G DD V KP RE+LARV A RR + Sbjct: 64 EVCREIRKSSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQ 123 Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N GPI + S+ + E L RE +L YL + G+ + + + Sbjct: 124 GGAAEKEENTEMVIGPIVINSNAYSVTKREESIELTHREFELLHYLAKHLGQVMTREHLL 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++G +D + V+ + +LR+K+ + + ++R +GY + Sbjct: 184 QTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGYYL 229 >gi|56964476|ref|YP_176207.1| two-component response regulator of alkaline phosphatase synthesis [Bacillus clausii KSM-K16] gi|56910719|dbj|BAD65246.1| two-component response regulator of alkaline phosphatase synthesis [Bacillus clausii KSM-K16] Length = 240 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 46/234 (19%), Positives = 97/234 (41%), Gaps = 16/234 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + G +E + A D+ ++ L G + Sbjct: 5 ILVVDDEPSISTLLQYNLEQAGFEVETKLDGQAGFDRAKEADFDLIILDLML--PGMDGM 62 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ R +R P++ ++ + + G DD + KP RE+ ARV AI RR++ Sbjct: 63 DVCRQLRQEQIFVPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVTARVRAILRRIE 122 Query: 121 V-----------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 + + ++ + V+ E+ L +E +L YL ++G+ + Sbjct: 123 QTGGAVAKNEQGKGKSIQIADLTIYPQNYEVYVKKELLTLTPKEFELLVYLADHKGRVLT 182 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 + Q+ +A++ ++ + +V+ HIS LR K+ + + R LGY ++ Sbjct: 183 RDQLLNAVW-NYEFVGDTRIVDVHISHLRDKIEPNSKKPVYIKTIRGLGYKLEE 235 >gi|148381483|ref|YP_001256024.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 3502] gi|153931315|ref|YP_001385858.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|153937839|ref|YP_001389265.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|153940381|ref|YP_001392897.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|168181012|ref|ZP_02615676.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|168183623|ref|ZP_02618287.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|170755568|ref|YP_001783183.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] gi|226950999|ref|YP_002806090.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] gi|237797004|ref|YP_002864556.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] gi|148290967|emb|CAL85103.1| two-component response regulator [Clostridium botulinum A str. ATCC 3502] gi|152927359|gb|ABS32859.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|152933753|gb|ABS39252.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|152936277|gb|ABS41775.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|169120780|gb|ACA44616.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] gi|182668045|gb|EDT80024.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|182673177|gb|EDT85138.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|226841937|gb|ACO84603.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] gi|229261601|gb|ACQ52634.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] gi|295320874|gb|ADG01252.1| DNA-binding response regulator [Clostridium botulinum F str. 230613] gi|322807868|emb|CBZ05443.1| response regulator (CheY-like receiver domain and HTH-type DNA-binding domain) [Clostridium botulinum H04402 065] Length = 228 Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 36/223 (16%), Positives = 89/223 (39%), Gaps = 7/223 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + + G + + + + D+ ++ L ++ Sbjct: 9 LVVDDDENIAEVIKMYLENSGYDTRVCYNGKEAQEGFLEYKPDLVLLDIML--PHIDGVD 66 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRRL 119 + + IR S +P+I ++ + + G DD + KP +E + V Y Sbjct: 67 VLKWIRKDSTIPIIMLTAKGDTFDKVLALELGADDYIVKPFEPKELLARVKAVLRRYNVD 126 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + + + + + +P +E +L YL N+ + + Q+ ++G Sbjct: 127 NENKEALNFEQLTIDVNSYTVVYKNKEIKMPPKEFELLYYLARNKNRVFTREQLLCEVWG 186 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D + V+ HI +LR+KL ++ +++ +GY + Sbjct: 187 -YDYPGDSRTVDVHIKRLREKLEGGPNWE-IETVWGVGYKFEV 227 >gi|30022664|ref|NP_834295.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Bacillus cereus ATCC 14579] gi|206969884|ref|ZP_03230838.1| DNA-binding response regulator PhoP [Bacillus cereus AH1134] gi|218233317|ref|YP_002369385.1| DNA-binding response regulator PhoP [Bacillus cereus B4264] gi|218899742|ref|YP_002448153.1| DNA-binding response regulator PhoP [Bacillus cereus G9842] gi|228903106|ref|ZP_04067242.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis IBL 4222] gi|228910413|ref|ZP_04074228.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis IBL 200] gi|228923333|ref|ZP_04086621.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228941768|ref|ZP_04104315.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228954858|ref|ZP_04116878.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228960858|ref|ZP_04122491.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar pakistani str. T13001] gi|228967686|ref|ZP_04128706.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar sotto str. T04001] gi|228974692|ref|ZP_04135258.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981286|ref|ZP_04141586.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis Bt407] gi|229048296|ref|ZP_04193864.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH676] gi|229072091|ref|ZP_04205300.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus F65185] gi|229081841|ref|ZP_04214333.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock4-2] gi|229112054|ref|ZP_04241597.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock1-15] gi|229129873|ref|ZP_04258839.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BDRD-Cer4] gi|229147149|ref|ZP_04275507.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BDRD-ST24] gi|229152784|ref|ZP_04280967.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus m1550] gi|229180908|ref|ZP_04308243.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus 172560W] gi|229192790|ref|ZP_04319748.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus ATCC 10876] gi|296505061|ref|YP_003666761.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Bacillus thuringiensis BMB171] gi|29898223|gb|AAP11496.1| Alkaline phosphatase synthesis two-component response regulator phoP [Bacillus cereus ATCC 14579] gi|206735572|gb|EDZ52740.1| DNA-binding response regulator PhoP [Bacillus cereus AH1134] gi|218161274|gb|ACK61266.1| DNA-binding response regulator PhoP [Bacillus cereus B4264] gi|218542946|gb|ACK95340.1| DNA-binding response regulator PhoP [Bacillus cereus G9842] gi|228590629|gb|EEK48490.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus ATCC 10876] gi|228602465|gb|EEK59951.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus 172560W] gi|228630604|gb|EEK87250.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus m1550] gi|228636259|gb|EEK92731.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BDRD-ST24] gi|228653564|gb|EEL09436.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BDRD-Cer4] gi|228671377|gb|EEL26678.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock1-15] gi|228701429|gb|EEL53923.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock4-2] gi|228711025|gb|EEL62991.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus F65185] gi|228723021|gb|EEL74398.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH676] gi|228778486|gb|EEM26753.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis Bt407] gi|228785095|gb|EEM33108.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228792019|gb|EEM39601.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar sotto str. T04001] gi|228798754|gb|EEM45734.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar pakistani str. T13001] gi|228804847|gb|EEM51446.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228817980|gb|EEM64058.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228836287|gb|EEM81640.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228849179|gb|EEM94018.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis IBL 200] gi|228856515|gb|EEN01039.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis IBL 4222] gi|296326113|gb|ADH09041.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Bacillus thuringiensis BMB171] gi|326942372|gb|AEA18268.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Bacillus thuringiensis serovar chinensis CT-43] Length = 239 Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 50/233 (21%), Positives = 93/233 (39%), Gaps = 15/233 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + G + E ++ R D+ ++ L + Sbjct: 5 ILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERPDLIILDLML--PKMDGM 62 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ + +R P++ ++ + + G DD + KP RE++ARV AI RR K Sbjct: 63 EVCKELRLQRVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTK 122 Query: 121 VSNNRAETGPIRVFSDG----------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + S + QG L +E +L YL N+ + + + Sbjct: 123 LQQEEQVAEAPDEDSITIAELKILPEFYEAYFQGRKLELTPKEFELLVYLAKNKSRVLTR 182 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 Q+ SA++ +D A + +V+ HIS LR K+ + + R LGY ++ Sbjct: 183 DQLLSAVW-NYDFAGDTRIVDVHISHLRDKIEQNTKKPTYIKTIRGLGYKLEE 234 >gi|220931316|ref|YP_002508224.1| two component transcriptional regulator, winged helix family [Halothermothrix orenii H 168] gi|219992626|gb|ACL69229.1| two component transcriptional regulator, winged helix family [Halothermothrix orenii H 168] Length = 237 Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 51/233 (21%), Positives = 98/233 (42%), Gaps = 14/233 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ + +G ++ + + S+ ++ ++ L + Sbjct: 7 ILVVDDEQEIRELLKSYLEREGYVVDTVKDGKTALFRVSNQDYNLVILDIML--PDTDGV 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 E+ R IR + +P+I ++ S + G DD + KP E++ARV A RR Sbjct: 65 EVCRTIREITNIPIIMLTARDSEVDKVLGLRIGADDYITKPFLPGELIARVKAQLRRFFV 124 Query: 121 -------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 S + G +++ DG + + L E +IL L GK K QI Sbjct: 125 LGSEGDARSRKMVKFGDLKIDFDGYRVYKRNKEVQLTSTEFKILLLLAREPGKVFTKKQI 184 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI--DWN 223 F+ ++G + N V HI +LR K+ + + +++ +GY D N Sbjct: 185 FNKVWGDDYLEADNN-VMVHIRRLRTKIEDDPKNPEFIETVWGIGYRFAGDEN 236 >gi|269124961|ref|YP_003298331.1| winged helix family two component transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268309919|gb|ACY96293.1| two component transcriptional regulator, winged helix family [Thermomonospora curvata DSM 43183] Length = 226 Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 53/224 (23%), Positives = 98/224 (43%), Gaps = 8/224 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D D +G + ++ + D+ ++ L G E Sbjct: 5 LVVEDEESFSDALSYNLRKEGFEVAVASTGPDALEIFDRNGADLVLLDLML--PGLPGTE 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +RA S VP+I ++ S + + G DD V KP RE++AR+ A+ RR + Sbjct: 63 VCRELRARSNVPVIMLTAKDSEVDKVVGLELGADDYVTKPFSTRELIARMRAVLRRRGDA 122 Query: 123 NNRAETG----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + P+R+ + V GE LP +E +LE L+ N G+ + + Q+ ++ Sbjct: 123 EEPPPSVLEAGPVRMDVERHVVTVDGEAVQLPLKEFELLEVLLRNAGRVLTRMQLIDRVW 182 Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 G D + ++ HI +LR K+ + + R LGY + Sbjct: 183 GA-DYVGDTKTLDVHIKRLRAKIEPVPSSPRYIVTVRGLGYKFE 225 >gi|168217605|ref|ZP_02643230.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239] gi|182380315|gb|EDT77794.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239] Length = 228 Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 44/224 (19%), Positives = 92/224 (41%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + G +++ + + + + + ++ L G + Sbjct: 8 ILIVDDDENICEVIKMYLETTGYNVKVAHDGKAAKEEFVNFSPSLVVLDMML--PGIDGM 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118 E+ + IR S VP+I ++ + + G DD V KP +E + V Y Sbjct: 66 EVLKWIRKDSNVPVIMLTAKGETFDKVLALEIGADDYVVKPFEPKELLARVKAVMRRYSG 125 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + N + + ++ GE P +E +L YL +N+ K + Q+ ++ Sbjct: 126 EEPDNVVLNFPGLTIDANSYKVIYNGEEVKTPPKEFELLHYLASNKNKVFTRDQLLCEVW 185 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 G +D + V+ HI +LR+KL N +++ +GY + Sbjct: 186 G-YDYPGDSRTVDVHIKRLREKL-NGGEDWQLETVWGVGYKFEV 227 >gi|326202264|ref|ZP_08192133.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] gi|325987382|gb|EGD48209.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] Length = 232 Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 43/230 (18%), Positives = 93/230 (40%), Gaps = 12/230 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G E L S D+ ++ L Sbjct: 5 ILIVDDEKNIVDILKFNLKKEGYDTIEAYDGEEAVNLALSQNPDLILLDIML--PKMDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118 + R +R P++ ++ + + G DD + KP RE++ARV A RR Sbjct: 63 TVCRKLRQSISTPILMLTAKEEEVDKVLGLELGADDYITKPFSPRELMARVKANLRRLIP 122 Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 +++ + G + + D + + E L RE ++++L A +G ++ + Sbjct: 123 GEQPGEDTNSHINKYGDLTIDIDRYEIKRGEETIELTLREFELVKFLAAQQGTIFSRETL 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 ++G ++ + V+ + ++R+KL + + +KR +GY + Sbjct: 183 LEKVWG-YEYYGDVRTVDVTVRRVREKLELDPANPQYIVTKRGVGYYFNK 231 >gi|148654369|ref|YP_001274574.1| two component transcriptional regulator [Roseiflexus sp. RS-1] gi|148566479|gb|ABQ88624.1| two component transcriptional regulator, winged helix family [Roseiflexus sp. RS-1] Length = 245 Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 39/225 (17%), Positives = 84/225 (37%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D +++ + F G + + + D+ ++ L G Sbjct: 4 ILLVEDDSVLLETLSYNFERAGFQVATASDGLTGLEMARRTHPDLIILDVML--PGLDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAIY 116 + R + + VP++ ++ + + G D V KP R Sbjct: 62 SVCRAVAKETTVPIVLLTALHDEAHRIAGLELGAIDYVVKPFSMGELLARVRAILRWNER 121 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 +R S+N GP+++ + R + L +E +L LM N G +++ + Sbjct: 122 QRQTPSSNVLCVGPVQLDRNSRRVWYKDREIELSHKEFDLLACLMHNAGVALSRDLLLER 181 Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++G D ++ H+ LR+KL + + + R +GY Sbjct: 182 VWG-SDFLGSNRTIDVHVRWLREKLEPDPANPTLIRTVRGIGYCF 225 >gi|317130194|ref|YP_004096476.1| two component transcriptional regulator, winged helix family [Bacillus cellulosilyticus DSM 2522] gi|315475142|gb|ADU31745.1| two component transcriptional regulator, winged helix family [Bacillus cellulosilyticus DSM 2522] Length = 231 Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 41/224 (18%), Positives = 88/224 (39%), Gaps = 6/224 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++I+D + D +G ++ + E + D ++ L E Sbjct: 8 LVIEDDPNICDLLKLYLEKEGYAVTIAHDGEKGLIDYYDHQPDFIVLDIML--PKIDGWE 65 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRRL 119 + R IR VP+I I+ + + G DD V KP +E + V Sbjct: 66 VCREIRKDRNVPVIMITGKGESYDKIKGLELGADDYVVKPFDPKEVLARMKAVMRRTNPY 125 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +N +++ + + LP +E +L +L++++ + Q+ ++G Sbjct: 126 FGTNEEIALFGLKINIREYTLLREEKEIVLPPKELELLFFLISHKNNVFTRQQLLDEVWG 185 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 +D + ++ HI ++R+K+ G + + R +GY + N Sbjct: 186 -YDYEGDPRTIDVHIKRIREKIGEGSGEWSLKTIRGVGYKFEVN 228 >gi|170757153|ref|YP_001780676.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] gi|169122365|gb|ACA46201.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] Length = 233 Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 44/226 (19%), Positives = 85/226 (37%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D A + + E L + ++ L Sbjct: 7 ILVVDDEERILDVVKAYLEKEDYEVITAMDGEEAIKLFKETSFHLIILDLML--PKLSGE 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ IR S VP+I ++ + L+ G DD + KP R+++ARV A+ RR Sbjct: 65 EVCSKIRESSNVPIIMLTAKVEEEDKLEGLSIGADDYLTKPFSVRKLVARVKALIRRAYR 124 Query: 122 SNNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 I G+ L E ++L L+ N G+ + Q+ Sbjct: 125 GKYPLAEHLILNDGDLEVDIRKMKVLKNGKAVTLTPYEFKVLVSLLTNPGQVFTREQLVE 184 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 +G +D + V+++I +R+K+ + + + + +GY Sbjct: 185 QAFG-YDYESFDRTVDTYIKNIRQKIEDNPKAPNYITTVYGVGYRF 229 >gi|126651382|ref|ZP_01723589.1| PhoP [Bacillus sp. B14905] gi|126591911|gb|EAZ85994.1| PhoP [Bacillus sp. B14905] Length = 238 Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 44/233 (18%), Positives = 89/233 (38%), Gaps = 15/233 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + G +E + + ++ ++ L + Sbjct: 5 ILVIEDEFSIATLLKYNLEQAGYLVETAADGQEGLEKAIEIQPNLILLDLML--PKLDGM 62 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILA 110 E+ + IR P+I ++ + + G DD + KP R Sbjct: 63 EVCKQIRQQRMNTPIIMLTAKDDEFDKVLGLELGADDYMTKPFSPREVLARVKAVLRRFT 122 Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + + + E G +RVF + + +Q E +E +L YL+ N+ + + + Sbjct: 123 QNVVSDEKDEPQEKMFEFGQLRVFPERFEVFLQDEALEFTPKEFELLIYLLENKNRVLTR 182 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDW 222 Q+ SA++ +D A + +V+ HIS LR K+ + + R LGY + Sbjct: 183 DQLLSAVW-KYDFAGDTRIVDVHISHLRDKIEENSRKPMFIKTIRGLGYKFEE 234 >gi|331086756|ref|ZP_08335833.1| hypothetical protein HMPREF0987_02136 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330409922|gb|EGG89357.1| hypothetical protein HMPREF0987_02136 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 233 Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 37/230 (16%), Positives = 84/230 (36%), Gaps = 13/230 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + + E + ++ ++ L G Sbjct: 7 ILIVDDDENIAELISLYLLKECFDTMMVHDGEEALAAFDNYSPNLVLLDLML--PGIDGY 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112 ++ R IRA S P+I +S + + + G DD + KP +E + Sbjct: 65 QVCREIRAKSDTPIIMLSAKGEVFDKVLGLELGADDYMIKPFDSKELVARVKAVLRRYQA 124 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 I + G+V +P +E +L +L ++ + + Q Sbjct: 125 PRQETAAAEKGKCVSYPGIEINLTNYSVVCDGKVVEMPPKELELLYFLASSPNQVFTREQ 184 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + I+G ++ + V+ HI +LR+K+++ + + +GY + Sbjct: 185 LLDQIWG-YEYIGDTRTVDVHIKRLREKIKDHPTWSL-GTVWGIGYKFEV 232 >gi|229087145|ref|ZP_04219295.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock3-44] gi|228696213|gb|EEL49048.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock3-44] Length = 238 Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 43/232 (18%), Positives = 88/232 (37%), Gaps = 14/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + G + E + R D+ ++ L + Sbjct: 5 ILVVDDEEFILTLIEFNLQQAGFEVITAMDGEVALQKAVTERPDLIILDLML--PKMDGM 62 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILAR 111 E+ + +R P++ ++ + + G DD + KP RE + Sbjct: 63 EVCKELRLQRVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTK 122 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + N +++ + + Q E L +E +L YL N+G+ + + Sbjct: 123 LQDEQVPEVQDENSIHIVDLKILPEFYEAYFQEEKLELTPKEFELLVYLARNKGRVLTRD 182 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 Q+ SA++ +D A + +V+ HIS LR K+ + + R LGY ++ Sbjct: 183 QLLSAVW-NYDFAGDTRIVDVHISHLRDKIEKNTKKPTYIKTIRGLGYKLEE 233 >gi|110801119|ref|YP_695076.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124] gi|110675766|gb|ABG84753.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124] Length = 231 Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 50/227 (22%), Positives = 95/227 (41%), Gaps = 9/227 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD +++ +G E + L + D+ ++ L LE Sbjct: 7 LIVDDEEHIRELIKFNLKKEGYDTEVAVNGTEALKLIREIKFDLILLDLML--PEIDGLE 64 Query: 63 LPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYR 117 + + IR S +P++ I+ + + G DD + KP RE++ARV A Sbjct: 65 VCKEIRRNEETSDIPVMMITAKGEEFDKVLGLELGADDYITKPFSIRELMARVKALLRRS 124 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 +K N + G + V R+ + L +E +L+ L+ N+G + + + I Sbjct: 125 NVKKEENIIKFGDVVVNFKTREVTKGTQNVELTLKEFELLKLLIKNKGNILTRELLLDKI 184 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223 +G ++ E V+ HI LRKK+ + + + R +GY N Sbjct: 185 WG-YEYIGETRTVDVHIRHLRKKIESDDKNPQYIQTIRGVGYKFTSN 230 >gi|240146374|ref|ZP_04744975.1| DNA-binding response regulator YycF [Roseburia intestinalis L1-82] gi|257201483|gb|EEU99767.1| DNA-binding response regulator YycF [Roseburia intestinalis L1-82] gi|291535777|emb|CBL08889.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Roseburia intestinalis M50/1] Length = 230 Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 49/228 (21%), Positives = 97/228 (42%), Gaps = 10/228 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD L+ G DG+ ++ E + + D+ ++ L E Sbjct: 6 LVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEALKMATENAYDMVLLDIML--PKMDGFE 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + IR S +P++ ++ + + G DD + KP + E+ AR+ AI RR S Sbjct: 64 VCQHIREFSNMPIVMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRTAAS 123 Query: 123 NNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + E + + R + G+ L +E +LE L+ N K + + + Sbjct: 124 QPKKEDSKVIEAGDLKLDCESRRLFILGKEVNLTAKEFDLLELLVNNPNKVYGRENLLNL 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223 ++G ++ + V+ H+ +LR+K+ N V +K +GY N Sbjct: 184 VWG-YEYPGDVRTVDVHVRRLREKIESNPSEPKYVHTKWGVGYYYSQN 230 >gi|153953971|ref|YP_001394736.1| PhoB [Clostridium kluyveri DSM 555] gi|146346852|gb|EDK33388.1| PhoB [Clostridium kluyveri DSM 555] Length = 231 Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 41/227 (18%), Positives = 91/227 (40%), Gaps = 9/227 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + ++G + + R + ++ L G Sbjct: 6 ILIVDDEEHICELIKFNLENNGYKTIIASEGMEALKIAKEERPKLILLDVML--PGMDGY 63 Query: 62 ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIY 116 ++ + IR + P++ I+ + + G DD + KP RE+ + Sbjct: 64 DVCKEIRKDESIASTPIMMITARGEEFDKVLGLELGADDYITKPFSVRELLARVKAILRR 123 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 +K + G I + D + GE L +E +L+ L+ N+G+ + + + Sbjct: 124 TAIKTLDKYYVFGDISIDFDRHEVLKNGEKVELTLKEFELLQMLIKNKGRVMTRDFLLDK 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDW 222 I+G ++ E V+ HI +R+K+ + +++ R +GY +W Sbjct: 184 IWG-YEYVGETRTVDVHIRHIRQKIESCDKKPKYIETIRGIGYRFNW 229 >gi|148380484|ref|YP_001255025.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum A str. ATCC 3502] gi|153932630|ref|YP_001384708.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|153937638|ref|YP_001388229.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|148289968|emb|CAL84081.1| two-component response regulator [Clostridium botulinum A str. ATCC 3502] gi|152928674|gb|ABS34174.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|152933552|gb|ABS39051.1| putative phosphate regulon DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|322806798|emb|CBZ04367.1| phosphate regulon transcriptional regulatory protein PhoB (SphR) [Clostridium botulinum H04402 065] Length = 232 Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 43/227 (18%), Positives = 89/227 (39%), Gaps = 10/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + ++ + + + + D+ ++ L G Sbjct: 6 ILIVDDEEHICELIKFNLENNSYNCICALNGIEALNIAKEEKPDLILLDLML--PGMDGY 63 Query: 62 ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPI---HHREILARVAAI 115 E+ + IR + + P+I I+ + + G DD + KP + V Sbjct: 64 EVCKEIRKDNNIATTPIIMITAKGEELDKVLGLELGADDYITKPFSVREMVARVKAVLRR 123 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + + G I V + GE L +E +LE L+ N+GK + + + Sbjct: 124 RTTINIESKSYILGNIVVDFEKHSLTKAGEKIELTLKEFELLEVLIKNKGKVMTRDFLLD 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 I+G ++ E V+ HI LRKK+ + +++ R +GY + Sbjct: 184 RIWG-YEYIGETRTVDVHIRHLRKKIEDDDKNPKFIETIRGIGYRFN 229 >gi|156744264|ref|YP_001434393.1| two component transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156235592|gb|ABU60375.1| two component transcriptional regulator, winged helix family [Roseiflexus castenholzii DSM 13941] Length = 245 Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 39/225 (17%), Positives = 85/225 (37%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D +++ + F G + + R D+ ++ L G Sbjct: 4 ILLVEDDSVLLETLSYNFERAGFQVTTAADGLTGLEMVRQVRPDLIILDVML--PGIDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAIY 116 + R + + +P++ ++ + + G D V KP R Sbjct: 62 SVCRAVAKETAIPIVLLTALHDEAHRIAGLELGAIDYVVKPFSMGELLARVRAILRWNER 121 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 +R ++N GP+++ + R Q L ++E +L LM N G +++ + Sbjct: 122 QRQAPTSNVLSIGPVQLDRNSRRVWYQDREVELSQKEFDLLACLMHNAGVALSRDLLLER 181 Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++G D ++ H+ LR+KL + + + R +GY Sbjct: 182 VWGN-DFLGSNRTIDVHVRWLREKLEPDPANPVLIRTVRGIGYCF 225 >gi|320162057|ref|YP_004175282.1| OmpR family two-component response regulator [Anaerolinea thermophila UNI-1] gi|319995911|dbj|BAJ64682.1| OmpR family two-component response regulator [Anaerolinea thermophila UNI-1] Length = 235 Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 52/228 (22%), Positives = 93/228 (40%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LIDD + A +G + + S + D+ ++ L G + Sbjct: 14 ILLIDDEISIHTVVTAYLKAEGYEYQSAMDGPSGLAMARSFKPDIIILDVML--PGMDGI 71 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL +R S V +I ++ + G DD + KP RE++AR+ A RRL Sbjct: 72 ELLAHLRRESNVYVIMLTARSEETDKIVGLSVGADDYLTKPFSPRELMARIKAALRRLNP 131 Query: 122 SN------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 +R+ R V + L E +L L + G+ +++ Q+ Sbjct: 132 PPAATSETAMLNFAHVRIDPSARRVWVNNTLIDLTTVEFDLLLTLAQHHGRVLSREQLLE 191 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 ++G +D + VV+ HI +R+KL N +++ R +GY + N Sbjct: 192 KVWG-YDYYGDTRVVDVHIGHIRQKLGNNT---WIETVRGVGYRFEDN 235 >gi|311069837|ref|YP_003974760.1| two-component response regulator [Bacillus atrophaeus 1942] gi|310870354|gb|ADP33829.1| two-component response regulator [Bacillus atrophaeus 1942] Length = 239 Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 48/229 (20%), Positives = 93/229 (40%), Gaps = 10/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +++DD + D + +G + S E + + D+ ++ G Sbjct: 6 ILIVDDENAIVDMVKRVLDKEGFQNVMTAGSAEEAIPIVKKEKIDLLVLDVM--MDGMSG 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E IR +S P+ ++ S L F SG DD + KP + E++AR+ A +R Sbjct: 64 FEACAAIREYSDAPIFFLTAKTSDTDKLSGFASGADDYITKPFNPLELVARIRAHLKRTY 123 Query: 121 VSNNRAETGPIRVFSDGRDPEVQG-----EVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + P P+ +V + ++L+Y + ++K QI+ Sbjct: 124 KQEDGRSSTPYAYEHFTFYPQFAELIVGGKVVSCSAQLLQLLQYFCDHPNVVLSKDQIYE 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223 ++G + + N V H+ KLR+K+ + + + + R LGY N Sbjct: 184 KVWG-YPSYGDNNTVMVHVRKLREKIERDASDPEYIVTVRGLGYRFIPN 231 >gi|168205748|ref|ZP_02631753.1| DNA-binding response regulator [Clostridium perfringens E str. JGS1987] gi|168209726|ref|ZP_02635351.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC 3626] gi|169343283|ref|ZP_02864293.1| DNA-binding response regulator [Clostridium perfringens C str. JGS1495] gi|182624276|ref|ZP_02952061.1| DNA-binding response regulator [Clostridium perfringens D str. JGS1721] gi|169298581|gb|EDS80662.1| DNA-binding response regulator [Clostridium perfringens C str. JGS1495] gi|170662683|gb|EDT15366.1| DNA-binding response regulator [Clostridium perfringens E str. JGS1987] gi|170712050|gb|EDT24232.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC 3626] gi|177910494|gb|EDT72867.1| DNA-binding response regulator [Clostridium perfringens D str. JGS1721] Length = 228 Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 44/224 (19%), Positives = 93/224 (41%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + G +++ + + + + ++ ++ L G + Sbjct: 8 ILIVDDDENICEVIKMYLETTGYNVKVAHDGKAAKEEFVNFSPNLVVLDMML--PGIDGM 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118 E+ + IR S VP+I ++ + + G DD V KP +E + V Y Sbjct: 66 EVLKWIRKDSNVPVIMLTAKGETFDKVLALEIGADDYVVKPFEPKELLARVKAVMRRYSG 125 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + N + + ++ GE P +E +L YL +N+ K + Q+ ++ Sbjct: 126 EEPDNVVLNFPGLTIDANSYKVIYNGEEVKTPPKEFELLHYLASNKNKVFTRDQLLCEVW 185 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 G +D + V+ HI +LR+KL N +++ +GY + Sbjct: 186 G-YDYPGDSRTVDVHIKRLREKL-NGGEDWQLETVWGVGYKFEV 227 >gi|146338745|ref|YP_001203793.1| two-component regulatory system response regulator [Bradyrhizobium sp. ORS278] gi|146191551|emb|CAL75556.1| response regulator in two-component regulatory system with PhoR (or CreC), regulation of Pi uptake (OmpR family) [Bradyrhizobium sp. ORS278] Length = 235 Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 51/225 (22%), Positives = 95/225 (42%), Gaps = 8/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G +E + + D+ ++ L G + Sbjct: 5 ILVVEDEEALTTLLRYNLEAEGYEVETVARGDEADTRLKERIPDLVVLDWML--PGLSGI 62 Query: 62 ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IY 116 EL R +RA S+ P+I ++ + +G DD + KP E+LARV Sbjct: 63 ELCRRLRARSETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLLRR 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + G I + + R G L E R+LE+ + + G+ ++ Q+ + Sbjct: 123 ASPERLATVLSYGDIELDREKRRVARSGRPIDLGPTEYRLLEFFLEHPGRVFSREQLLDS 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G D ++E V+ HI +LRK L DP+ + R GY++D Sbjct: 183 VWGR-DIYIDERTVDVHIGRLRKLLNPGREQDPIRTVRGAGYALD 226 >gi|309775090|ref|ZP_07670103.1| DNA-binding response regulator [Erysipelotrichaceae bacterium 3_1_53] gi|308917204|gb|EFP62931.1| DNA-binding response regulator [Erysipelotrichaceae bacterium 3_1_53] Length = 229 Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 41/229 (17%), Positives = 83/229 (36%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ L ++G ++ E D+ I ++ Sbjct: 5 ILIVDDNQEIREVVSVLLENEGYEVQEAEDGEIAIAKAK----DMDLIILDVMMPKMDGF 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARVA 113 + R IR S P++ ++ Q F SG DD + KP + E+ Sbjct: 61 KACRQIREVSNAPILFLTAKTMDQDKALGFSSGGDDYLAKPFSYNELIARVKALLRRYCI 120 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + ++++ + + + + G+ L E +IL L + K + ++ Sbjct: 121 YKGKEEPLTDSHIVMHDLDISRESNQIKKNGQTVNLTEMEYQILLLLAEHPKKIFSNQEL 180 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 + AI+ N + HI LRKKL + + + GY D Sbjct: 181 YEAIWKGPYMYSANNTIMVHIRNLRKKLDVDPQNPLYIKTVWGKGYRFD 229 >gi|302523119|ref|ZP_07275461.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. SPB78] gi|318057260|ref|ZP_07975983.1| two-component system response regulator [Streptomyces sp. SA3_actG] gi|318076712|ref|ZP_07984044.1| two-component system response regulator [Streptomyces sp. SA3_actF] gi|302432014|gb|EFL03830.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. SPB78] Length = 247 Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 44/225 (19%), Positives = 92/225 (40%), Gaps = 10/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D A ++ G G ++ + + S R D+ ++ L Sbjct: 14 LVVEDDASIRTLLTTALGAAGYTVASASDGRAAVFQAGSRRPDLIVLDVML--PDTDGFR 71 Query: 63 LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI------ 115 L R +RA P++ ++ ++ + SG DD V KP H +E+L RV AI Sbjct: 72 LTRELRAQGVYTPVLFLTARAGVEDRITGLSSGGDDYVTKPFHVQEVLLRVRAILRRAGA 131 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + + G L E R+L +A+ + + K +I Sbjct: 132 PASTAPVRPPLRYAGLSLDESTHEVRHAGSPLRLSPTEFRLLACFLAHPERVLEKAEILQ 191 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +D + + +V++++ LR+KL + + + R +GY + Sbjct: 192 RVW-RYDFSGDTRIVDTYVKNLRRKLDHGGAPALLHTVRGVGYCL 235 >gi|167766653|ref|ZP_02438706.1| hypothetical protein CLOSS21_01159 [Clostridium sp. SS2/1] gi|317499486|ref|ZP_07957752.1| response regulator receiver domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] gi|167711776|gb|EDS22355.1| hypothetical protein CLOSS21_01159 [Clostridium sp. SS2/1] gi|291558666|emb|CBL37466.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [butyrate-producing bacterium SSC/2] gi|316893260|gb|EFV15476.1| response regulator receiver domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 229 Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 48/226 (21%), Positives = 95/226 (42%), Gaps = 11/226 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD L+ G D + ++ E + D+ ++ L G E Sbjct: 5 LVVDDEKLIVKGIKFSLEQDEMQVDCAYDGEEALEKAKENQYDIILLDVML--PGLTGFE 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAAI 115 + + IR S VP+I ++ + + G DD + KP + E+ R A Sbjct: 63 VCQAIREFSSVPIIMLTAKGEDMDKILGLEYGADDYITKPFNILEVKARIKAILRRSAHH 122 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + S E +++ + R + G+ L +E +LE L+ + K ++ + + Sbjct: 123 DVKEEESAKVVECRGLKIDCESRRVHIHGKEVNLTAKEFDLLELLVFHPNKVYSREDLLN 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 ++G +D + V+ HI +LR+K+ G D V +K +GY Sbjct: 183 TVWG-YDYPGDARTVDVHIRRLREKIEVNPGVPDYVHTKWGVGYYF 227 >gi|323701248|ref|ZP_08112923.1| two component transcriptional regulator, winged helix family [Desulfotomaculum nigrificans DSM 574] gi|323533850|gb|EGB23714.1| two component transcriptional regulator, winged helix family [Desulfotomaculum nigrificans DSM 574] Length = 232 Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 44/227 (19%), Positives = 89/227 (39%), Gaps = 10/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD + +G + E + + + D+ ++ L Sbjct: 5 ILIADDDHRIVKIVTHCLEQEGYRVVAAQDGEEAVRMAGALKPDLVILDIM--MPKLDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E + I+ + VP++ +S L + F GVDD KP E+ RV A+ RR K Sbjct: 63 EACQKIKGAADVPIVILSAKDDLVDKIVGFKMGVDDYQTKPFSPAELALRVKAVLRRSKG 122 Query: 122 SNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 +R + I + R + + L +E +L + ++ + ++ Q+ Sbjct: 123 VTDRKKGQEILNYPHVYIELATRQVRIWEQEISLTAKEFDLLWLMASHPNQVFSRLQLLE 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 I+ +E+ V HI +LR+K+ N + + + +GY + Sbjct: 183 QIW-ESRYEGDEDTVTVHIRRLRRKIERNPAQPELIKTVWGVGYKFE 228 >gi|310779288|ref|YP_003967621.1| two component transcriptional regulator, winged helix family [Ilyobacter polytropus DSM 2926] gi|309748611|gb|ADO83273.1| two component transcriptional regulator, winged helix family [Ilyobacter polytropus DSM 2926] Length = 217 Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 42/221 (19%), Positives = 91/221 (41%), Gaps = 8/221 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++ +G ++ + D+ ++ L Sbjct: 4 ILVVEDEWKMRRLIKDYLVKEGYHVDEAGDGMQALEMFQEGGYDLVILDIML--PKMDGW 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R IR S VP+I ++ + F+ D+ + KP + R + R Sbjct: 62 SVCREIRRESMVPVIMLTARSEENDQIFGFELEADEYITKPFNPRLL-VARIKAIFRRAG 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 ++ G I + R E++GE L +E +L Y + NRG +++ +I ++++G + Sbjct: 121 KPDKISRGDIEIDEGSRKVEIKGEAVELTSKEFEMLLYFVQNRGIALSREKILNSVWG-W 179 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 D + V++H+ +LRKK+ + + R GY + Sbjct: 180 DYFGDVRTVDTHVKRLRKKIGEI----YIQTIRGFGYRFEE 216 >gi|303241736|ref|ZP_07328233.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] gi|302590737|gb|EFL60488.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] Length = 228 Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 46/223 (20%), Positives = 92/223 (41%), Gaps = 6/223 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++IDD + + +G + + + ++ ++ L G + Sbjct: 8 LVIDDDVNICELIRLYMEKEGFEVLTIYNGIKAIEAFKTFAPNIVVLDIML--PGADGWQ 65 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR S +P+I +S + + G DD + KP +E++ARV A+ RR + Sbjct: 66 VCREIRQVSNIPIIMLSAKGETFDKVLGLELGADDYIVKPFESKELVARVKAVLRRYEHK 125 Query: 123 NNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + +V G +P +E +L +L +N K + Q+ ++G Sbjct: 126 EIDVKEVVYPNLVINKSNYTLKVNGTDMEVPPKELELLYFLASNPNKVFTRDQLLEQVWG 185 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 FD + V+ HI +LR+K+ ++ V + +GY + Sbjct: 186 -FDFYGDSRTVDVHIKRLREKIESEDQNWQVKTVWGVGYKFEV 227 >gi|302390526|ref|YP_003826347.1| two component transcriptional regulator, winged helix family [Thermosediminibacter oceani DSM 16646] gi|302201154|gb|ADL08724.1| two component transcriptional regulator, winged helix family [Thermosediminibacter oceani DSM 16646] Length = 229 Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 52/223 (23%), Positives = 94/223 (42%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G ++ +S L + D+ ++ Sbjct: 6 ILVVDDEDKLLDLIKNFLEKEGFAVTCADSGVEALKLLEKRKFDLVVLDIM--MPEVSGF 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118 ++ R IR Q+P+I ++ L + G DD + KP RE + V + Sbjct: 64 DVLRRIREKIQIPVIFLTARAEEPDKLLGLELGGDDYITKPFSLRELAARIRAVLRRAKP 123 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + +N E G IR+ + + + G L E RIL LMA+ G V++ +I ++ Sbjct: 124 SEAANTILEYGGIRLDLNEKTASLNGRPLFLTPTEFRILAILMAHPGTIVSRLRILEEVF 183 Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 G + E +++HIS LRKKL + L + + GY + Sbjct: 184 GGY-YEGYERNLDTHISNLRKKLGDNPLNPRYIKTVYGTGYKL 225 >gi|170760425|ref|YP_001786436.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] gi|169407414|gb|ACA55825.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] Length = 233 Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 44/226 (19%), Positives = 84/226 (37%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D A +G + E L + ++ L Sbjct: 7 ILVVDDEERILDVVKAYLEKEGYEVITAMDGEEAIKLFKEISFHLVILDLML--PKIFGE 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL------ARVAAI 115 E+ IR S VP+I ++ + L+ G DD + KP RE++ R A Sbjct: 65 EVCSKIREFSNVPIIMLTAKVEEEDKLEGLSIGADDYLTKPFSVRELVARVKALIRRAYR 124 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + G + V G+V L E ++L L+ N G+ + Q+ Sbjct: 125 GEHPLAEHLILNNGDLEVDIRKMKVLKSGKVVTLTPYEFKVLVSLLTNPGQVFTREQLVE 184 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 +G +D V+++I +R+K+ + + + + +GY Sbjct: 185 QAFG-YDYESFNRTVDTYIKNIRQKIEDNPKAPNYITTVYGVGYRF 229 >gi|86609479|ref|YP_478241.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)] gi|86558021|gb|ABD02978.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)] Length = 239 Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 43/226 (19%), Positives = 91/226 (40%), Gaps = 9/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD + G S+E + + + + ++ L Sbjct: 4 ILIIDDDPSICALLQRYLQRQGYSVEVAMTGAEGLQQLRAFQPALVILDLNL--PDVSGY 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 +L + ++ + V ++ ++ S L F G DD + KP E+ ARV AI RR ++ Sbjct: 62 DLCQQMQKETGVYVLMLTSRVSPADKLHGFQLGADDYLTKPFSLPELQARVQAILRRQRM 121 Query: 122 SN-----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + + R + + L E +L + + G+ + ++ Sbjct: 122 KTEVASAPVLTFASLVIDPETRAVIREQRLINLTALEFDLLYAMARHPGRVWRRAELIQE 181 Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 ++ F+ +E VV+ HI ++RKKL + + + + R +GY + Sbjct: 182 VWD-FNHEGDERVVDVHIGQIRKKLETDTSQPELIRTVRGVGYKFE 226 >gi|170760192|ref|YP_001788883.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] gi|169407181|gb|ACA55592.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] Length = 228 Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 36/223 (16%), Positives = 89/223 (39%), Gaps = 7/223 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + + G + + + + D+ ++ L ++ Sbjct: 9 LVVDDDENIAEVIKMYLENSGYDTRVCYNGKEAQEGFLEYKPDLVLLDIML--PHIDGVD 66 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRRL 119 + + IR S +P+I ++ + + G DD + KP +E + V Y Sbjct: 67 VLKWIRKDSTIPIIMLTAKGDTFDKVLALELGADDYIVKPFEPKELLARVKAVLRRYNVD 126 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + + + + + +P +E +L YL N+ + + Q+ ++G Sbjct: 127 NENKEALNFEQLTIDVNSYTVVYKNKEIKMPPKEFELLYYLARNKNRVFTREQLLCEVWG 186 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D + V+ HI +LR+KL ++ +++ +GY + Sbjct: 187 -YDYPGDSRTVDVHIKRLREKLEGGSNWE-IETVWGVGYKFEV 227 >gi|219848013|ref|YP_002462446.1| winged helix family two component transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219542272|gb|ACL24010.1| two component transcriptional regulator, winged helix family [Chloroflexus aggregans DSM 9485] Length = 236 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 50/225 (22%), Positives = 93/225 (41%), Gaps = 9/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + + +G ++ + D+ ++ L Sbjct: 5 LIVEDETTLAETLRYNLEREGYAVIIAGDGVQGLDRARRDQPDLVVLDIML--PRLDGFS 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + RI+R S VP+I ++ + + G DD ++KP E LARV AI RR + Sbjct: 63 VCRILRQESDVPIIMLTARQDEVDRIAGLELGADDYISKPFSLGEFLARVRAILRRSERQ 122 Query: 123 NNRAETG-----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + IRV + R G+ LP++E +L LM NRG + + + + Sbjct: 123 PHSIVREVLEAGSIRVDASSRRAWRDGQELNLPQKEFDLLTCLMRNRGIALTRDLLLERV 182 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 +G D + V+ HI LR+K+ + + + R +GY + Sbjct: 183 WGQ-DFIGDSRTVDVHIRWLREKIEPDPSKPTYIQTVRGVGYRFE 226 >gi|68536723|ref|YP_251428.1| two-component system response regulator MtrA [Corynebacterium jeikeium K411] gi|68264322|emb|CAI37810.1| two-component system response regulator MtrA [Corynebacterium jeikeium K411] Length = 225 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 41/221 (18%), Positives = 88/221 (39%), Gaps = 6/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + +G D+ ++ L G + Sbjct: 5 ILVVDDDPAIAEMLTIVLQGEGFRTVVVGDGVEAVKAAEEHNPDLILLDVML--PGMNGI 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + IR S VP++ ++ + +SG DD V+KP +E++ARV A RR Sbjct: 63 DVCKAIRETSTVPIVMLTARTDTVDVVLGLESGADDYVHKPFKPKELVARVRARLRRTPE 122 Query: 122 SNNRAETGPIR--VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + G G+ L E +L L + + ++ ++ ++G Sbjct: 123 EAPAETIEVVDLKIDVPGHQVIRDGQEIALTPIEFDLLVTLASRPRQVFSREELLEQVWG 182 Query: 180 LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219 + ++ + +V HI +LR K+ + + + R +GY Sbjct: 183 -YRKSSDTRLVNVHIQRLRSKVERDPDDPKIIQTVRGIGYK 222 >gi|163797104|ref|ZP_02191059.1| Response regulator [alpha proteobacterium BAL199] gi|159177620|gb|EDP62173.1| Response regulator [alpha proteobacterium BAL199] Length = 246 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 49/224 (21%), Positives = 95/224 (42%), Gaps = 4/224 (1%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEK 59 + ++++D A + +G + E + + + D+ ++ L G + Sbjct: 18 LILIVEDEAPIVTLLRYNLEREGFRVADAGDGEEALLVAAERKPDLILLDWMLPLLSGIE 77 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 V R + VP+I ++ + +SG DD V KP E++ARV A+ RR Sbjct: 78 VCRRLRRVPDTKNVPIIMLTARGEEGDRIRGLNSGADDYVTKPFSPSELIARVRAVLRRA 137 Query: 120 KV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + G + + + L E R+L + + + G+ ++ Q+ + Sbjct: 138 RPSTEDEMLHYGDLHMDLAAHRVKRSERDIHLGPTEFRLLRHFLEHPGRVFSREQLLDTV 197 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +G D VE V+ HI +LRK L + D + + R GY++D Sbjct: 198 WG-PDVYVEPRTVDVHIRRLRKALNAEQDDDVIRTVRSAGYALD 240 >gi|172059033|ref|YP_001815493.1| two component transcriptional regulator [Exiguobacterium sibiricum 255-15] gi|171991554|gb|ACB62476.1| two component transcriptional regulator, winged helix family [Exiguobacterium sibiricum 255-15] Length = 236 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 48/228 (21%), Positives = 94/228 (41%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G S+ N D+ ++ L + Sbjct: 6 ILVVDDEQPIADILKFKLEKEGYSVAVANDGVEALEKVEEFNPDLILLDIMLPL--MDGM 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R S+VP+I ++ S T+ + G +D V KP RE+LARV A R + Sbjct: 64 EVCREVRKTSKVPIIMLTAKDSEIDTVLGLELGANDYVTKPFSSRELLARVKAHLRNVNT 123 Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + ++ Q + L +RE +L YL N G+ + + + Sbjct: 124 VEAAPANAGPGPLKVGELYIDTNSHTVTRQDQKIELTQREFELLHYLAKNIGQVMTREHL 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 ++G +D + V+ + +LR+K+ + + ++R +GY + Sbjct: 184 LQTVWG-YDYFGDVRTVDVTVRRLREKVEDNPSTPIYIMTRRGVGYYL 230 >gi|229195595|ref|ZP_04322361.1| Two-component response regulator [Bacillus cereus m1293] gi|228587844|gb|EEK45896.1| Two-component response regulator [Bacillus cereus m1293] Length = 218 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 42/222 (18%), Positives = 85/222 (38%), Gaps = 7/222 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + ++ + G E + + + D ++ L Sbjct: 2 LVVDDESDMRQLVGMYLDNFGYEWEEAENGKEALKKLETNHYDFVVLDIM--MPEMDGLS 59 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRLK 120 + + IR S VP+I ++ ++ G DD + KP E+ + Sbjct: 60 VCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTKQ 119 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + GPI + R EV GE L +E +L +L + G+ ++ Q+ ++G Sbjct: 120 EQQEEFQFGPILINEKSRKIEVDGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG- 178 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D A V++H+ +R KL + + +GY + Sbjct: 179 YDYAGSTRTVDTHVKTMRLKLGESGN--YIQTVWGVGYKFEV 218 >gi|331001884|ref|ZP_08325405.1| hypothetical protein HMPREF0491_00267 [Lachnospiraceae oral taxon 107 str. F0167] gi|330412207|gb|EGG91601.1| hypothetical protein HMPREF0491_00267 [Lachnospiraceae oral taxon 107 str. F0167] Length = 231 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 50/227 (22%), Positives = 94/227 (41%), Gaps = 11/227 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD L+ G DG ++ + D+ ++ L +E Sbjct: 5 LVVDDEKLIVKGIKFSLEQDGYEVDTAYDGNEALKMAKEKEYDIVLLDVML--PEMDGME 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + IR S++P+I ++ + + + G DD + KP + E+ AR+ AI RR Sbjct: 63 VCQAIREFSEMPIIMLTAKGTDMDKILGLEYGADDYITKPFNILEVKARIKAIIRRNSKK 122 Query: 123 NNRAETGPIRV-------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 E + D R + + L +E ILE L N K ++ ++ S Sbjct: 123 AKAVEKNERVIEVSDLRLDLDSRRVFEKDKELNLTAKEFDILELLTQNPDKVYSREKLLS 182 Query: 176 AIYGLF-DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++G EA + V+ H+ +LR+K+ N + +K +GY Sbjct: 183 IVWGNKLHEAGDVRTVDVHVRRLREKIEPNPSEPKYIHTKWGVGYYF 229 >gi|154509502|ref|ZP_02045144.1| hypothetical protein ACTODO_02034 [Actinomyces odontolyticus ATCC 17982] gi|153799136|gb|EDN81556.1| hypothetical protein ACTODO_02034 [Actinomyces odontolyticus ATCC 17982] Length = 227 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 43/221 (19%), Positives = 88/221 (39%), Gaps = 6/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + ++G + D+ ++ L G Sbjct: 5 ILVVDDDVALAEMIGIVLQNEGYEVVFCADGSAALTQFQEHNPDLVLLDVML--PGMDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R IR S P++ ++ + ++G DD V KP +E++ARV A R + Sbjct: 63 DVCRAIRRVSDAPIVMLTARSDTSDVVTGLEAGADDYVPKPFKPKELVARVRARLRGRED 122 Query: 122 SNNRAETGPIR--VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S + G + +G V L E +L L + K ++ ++ ++G Sbjct: 123 SQADEGLSLQDLSIDVAGHIVKREGRVIALTPLEFDLLVTLARSPWKVFSREELLEQVWG 182 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219 + A + +V H+ +LR K+ + V + R +GY Sbjct: 183 -YRHAADTRLVNVHVQRLRSKIERDPERPELVVTVRGVGYR 222 >gi|284047543|ref|YP_003397882.1| two component transcriptional regulator, winged helix family [Acidaminococcus fermentans DSM 20731] gi|283951764|gb|ADB46567.1| two component transcriptional regulator, winged helix family [Acidaminococcus fermentans DSM 20731] Length = 228 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 41/226 (18%), Positives = 91/226 (40%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + +G ++ E + D+ ++ L G Sbjct: 4 ILIVEDDLDIAELERDYLEANGFAVAIAGDGLAGEKAALDEKVDLVLLDIML--PGMDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R IR +P++ +S + G DD + KP E++ARV A +R + Sbjct: 62 QVCRRIREKRNIPILLVSARQEDVDKIRGLGLGADDYIVKPFSPGELVARVKAHLQRYRQ 121 Query: 122 SNNRA------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + + G ++G+ +P +E +L +L N G +K +F Sbjct: 122 LTGQHSGDQLLRRKDLTIDRKGHHVYLKGKEIAMPNKEFSLLLFLAENPGVVFSKETLFE 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 I+G D + V H++++R+K+ + +++ +GY Sbjct: 182 RIWGE-DSLGDTATVSVHVNRIREKIEPSTAKPEYIETVWGVGYRF 226 >gi|297583655|ref|YP_003699435.1| winged helix family two component transcriptional regulator [Bacillus selenitireducens MLS10] gi|297142112|gb|ADH98869.1| two component transcriptional regulator, winged helix family [Bacillus selenitireducens MLS10] Length = 238 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 39/231 (16%), Positives = 91/231 (39%), Gaps = 14/231 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + G + L + D+ ++ L L Sbjct: 5 ILIVDDEESILTLLQYNLDQAGFETVTAEDGKTAYDLAADDSFDLIVLDLML--PEMDGL 62 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILAR 111 E+ + +R P++ ++ + + G DD + KP RE + Sbjct: 63 EVCKSLRQLKVSTPILMLTAKDDEFDKVLGLELGADDYLTKPFSPREVVARVRAILRRSA 122 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 V ++ + ++ G + ++ + + + E L +E +L YL + G+ + + Sbjct: 123 VPKQDKKEEPETSKVILGDVHIYPENYEIFLHDEPLELTPKEFELLLYLTNHPGRVLTRD 182 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 Q+ +A++ ++ + +V+ HIS LR+K+ + + R LGY ++ Sbjct: 183 QLLNAVW-NYEFVGDTRIVDVHISHLREKIEPNTKKPVYIKTVRGLGYKLE 232 >gi|205372167|ref|ZP_03224982.1| two component transcriptional regulator [Bacillus coahuilensis m4-4] Length = 225 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 52/222 (23%), Positives = 101/222 (45%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD +++ +G ++ N E + S + I+ + Sbjct: 4 ILVADDDQFIRELITLYLKKEGYTVFEANDGEEASSILSQQTIHLCLIDVM--MPNKNGW 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL R IR +P++ ++ + + F G DD ++KP E++ RV A+ RR K+ Sbjct: 62 ELCREIRDLYDLPILMVTAKGESEDKIKGFQQGTDDYISKPFDPHELIMRVKALLRRYKI 121 Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + T + + + + E P +E ++L L ++ G+ ++ Q+ I+G Sbjct: 122 NTHEKVTIANVVIDAKSVEVTIDQEPIAFPLKEFQLLHKLASHPGQVFSREQLIEEIWG- 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 D + V+SHI K+RKKL + FD + + R LGY ++ Sbjct: 181 SDFDGFDRTVDSHIKKIRKKLSQQTAFD-IVTIRGLGYRLEV 221 >gi|158321804|ref|YP_001514311.1| two component transcriptional regulator [Alkaliphilus oremlandii OhILAs] gi|158142003|gb|ABW20315.1| two component transcriptional regulator, winged helix family [Alkaliphilus oremlandii OhILAs] Length = 229 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 39/225 (17%), Positives = 82/225 (36%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + D +G + E + D+ ++ L Sbjct: 5 ILIVEDEKPISDIVRFNLEKEGYKVLVAYDGEDGVNKALTLNPDLVLLDVML--PKLDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-----ILARVAAIY 116 ++ R IRA S VP++ ++ + + G DD + KP RE Sbjct: 63 QVCRKIRASSSVPILMLTAKEEEVDKVLGLEMGADDYITKPFGMRELLARVKANLRRTES 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 TG I + + V L RE +L++L + + Q+ Sbjct: 123 GSGSNLEGIFTTGGIVIDFSKYEVRKNDTVIELTSREFELLKFLALQAEQVFTREQLLKQ 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 ++G ++ + V+ + +LR+K+ + + + +KR +GY Sbjct: 183 VWG-YEYYGDIRTVDVTVRRLREKVEDNSAEPEYIMTKRGVGYYF 226 >gi|222526878|ref|YP_002571349.1| winged helix family two component transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|222450757|gb|ACM55023.1| two component transcriptional regulator, winged helix family [Chloroflexus sp. Y-400-fl] Length = 234 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 53/227 (23%), Positives = 94/227 (41%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D + ++G + L S + D+ ++ L G + Sbjct: 6 ILVVDDEQPIVDLVSSYLTNEGFVVHRAYDGPGALALARSVKPDLVVLDVML--PGLDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R + + V ++ ++ L G DD + KP RE++ARV AI RR +V Sbjct: 64 EVCRQLHRDTSVFVLMLTARADEIDKLIGLSVGADDYLTKPFSPRELVARVKAILRRNRV 123 Query: 122 SNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + R+ E G L RE +L L + G+ + ++ Sbjct: 124 IRAIEVNQRPILQFEGLLIDPERREVERNGVRVDLTPREFDLLYALASYPGRVFTREELL 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220 ++G D A + VV+ HI LR+KL + G V + R +GY Sbjct: 184 QRVWG-PDFAGIDRVVDVHIGTLRRKLDDDHHGTPLVQTVRGVGYKF 229 >gi|56751699|ref|YP_172400.1| two-component response regulator for energy transfer from phycobilisomes to photosystems [Synechococcus elongatus PCC 6301] gi|81301225|ref|YP_401433.1| two component transcriptional regulator [Synechococcus elongatus PCC 7942] gi|56686658|dbj|BAD79880.1| two-component response regulator for energy transfer from phycobilisomes to photosystems [Synechococcus elongatus PCC 6301] gi|81170106|gb|ABB58446.1| two component transcriptional regulator, winged helix family [Synechococcus elongatus PCC 7942] Length = 255 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 52/228 (22%), Positives = 92/228 (40%), Gaps = 13/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A V+ G + + + D+ ++ L Sbjct: 16 ILVVDDEAAVRRILTMRLSMAGYQVVVASDGHEALAMFEQEAPDLIVLDVML--PKLDGY 73 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R +R S VP+I +S + + D G DD + KP +E+ AR+A I RRL Sbjct: 74 GVCRELRKLSDVPIIMLSALGDIADRITGLDLGADDYLPKPFSPKELEARIATILRRLDD 133 Query: 122 SNN---------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 S N + + ++ R +GE PL E +LE L G+ V + + Sbjct: 134 SPNALSAPSSPGVLRISDVEIDTNRRQVFQRGERVPLTYTEFSLLELLFRQPGRVVPRAE 193 Query: 173 IFSAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGY 218 I ++G + VV+ ++++LR KL + + + R GY Sbjct: 194 ILEELWGYPPRRNADLRVVDVYVARLRSKLEADPRNPELIITVRGTGY 241 >gi|329925047|ref|ZP_08279991.1| heme response regulator HssR [Paenibacillus sp. HGF5] gi|328940166|gb|EGG36498.1| heme response regulator HssR [Paenibacillus sp. HGF5] Length = 225 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 45/221 (20%), Positives = 99/221 (44%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD A +++ +G ++ + E L + + ++ ++ + Sbjct: 4 ILIADDDAHIRELLQYHLQTEGYTVLTASDGEEASVLLAEEQVHLAVVDVM--MPNKDGY 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 +L IR + VP+I ++ L F G DD + KP RE+L R+ A+ RR ++ Sbjct: 62 QLCEEIRRYYDVPVILLTAKDQLVDKERGFAVGTDDYLTKPFEPRELLFRIKALLRRYQM 121 Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + + + G+V LP +E +L L + + ++ ++ I+G Sbjct: 122 VSADKIRLNETTIDRKSYEVQGHGKVLMLPMKEFELLSQLASYPDRTFSREELIQLIWGT 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D ++ V+ HI +LR++ ++ G + + R +GY ++ Sbjct: 182 -DFDGDDRTVDVHIKRLRERFADRRGDFRIRTIRGVGYKLE 221 >gi|219854585|ref|YP_002471707.1| hypothetical protein CKR_1242 [Clostridium kluyveri NBRC 12016] gi|219568309|dbj|BAH06293.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 240 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 41/227 (18%), Positives = 91/227 (40%), Gaps = 9/227 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + ++G + + R + ++ L G Sbjct: 15 ILIVDDEEHICELIKFNLENNGYKTIIASEGMEALKIAKEERPKLILLDVML--PGMDGY 72 Query: 62 ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIY 116 ++ + IR + P++ I+ + + G DD + KP RE+ + Sbjct: 73 DVCKEIRKDESIASTPIMMITARGEEFDKVLGLELGADDYITKPFSVRELLARVKAILRR 132 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 +K + G I + D + GE L +E +L+ L+ N+G+ + + + Sbjct: 133 TAIKTLDKYYVFGDISIDFDRHEVLKNGEKVELTLKEFELLQMLIKNKGRVMTRDFLLDK 192 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDW 222 I+G ++ E V+ HI +R+K+ + +++ R +GY +W Sbjct: 193 IWG-YEYVGETRTVDVHIRHIRQKIESCDKKPKYIETIRGIGYRFNW 238 >gi|302871747|ref|YP_003840383.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor obsidiansis OB47] gi|302574606|gb|ADL42397.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor obsidiansis OB47] Length = 223 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 38/223 (17%), Positives = 93/223 (41%), Gaps = 6/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD + + +G + ++ + + D+ ++ L + Sbjct: 3 ILVIDDDIKICEVIKLYLEKEGFEVVVTHNGMDGISVFKNEMPDLVILDIML--PKKDGY 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 E+ R +R S +P+I ++ + + G DD + KP +E++AR+ + Sbjct: 61 EVCRELRKISNIPIIMLTAKGETFDKVLGLELGADDYIVKPFDPKELIARIKAVLRRTQG 120 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + V + +++ +V +P +E +L +L ++ K + Q+ I+ Sbjct: 121 EVNDEKVVVYPNLTVNLTTYEVKLEDKVIDMPPKEIELLYFLASHPNKVFTREQLLDHIW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 G ++ + V+ HI ++R+K+ N + + +GY + Sbjct: 181 G-YNFVGDTRTVDVHIKRIREKIENNKYPWKIKTVWGVGYKFE 222 >gi|253573896|ref|ZP_04851238.1| two-component system response regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251846373|gb|EES74379.1| two-component system response regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 239 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 45/230 (19%), Positives = 92/230 (40%), Gaps = 14/230 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + L S + D+ ++ L G+ + Sbjct: 5 ILVVDDEKPIADILKFNLEKEGYEVVLAFDGIEATQLAFSEQPDLILLDLML--PGKDGM 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH----------HREILAR 111 ++ R +RA + P+I ++ + + G DD V KP + Sbjct: 63 DVCREVRAKLETPIIMLTAKDGEIDKVLGLELGADDYVTKPFSTRELLARVKAQMRRQQK 122 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 AA + + + + +D GE L RE ++ YL+ N GK + + Sbjct: 123 AAAAAEGAEETKQGISLFELFIDTDMYTVYKNGEPLDLTHREFELMHYLVKNSGKVMTRE 182 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + A++G F+ + V+ I +LR+K+ + + + ++R LGY + Sbjct: 183 HLLQAVWG-FEYFGDVRTVDVTIRRLREKIEKDPSKPEYILTRRGLGYMM 231 >gi|315604878|ref|ZP_07879936.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str. F0310] gi|315313417|gb|EFU61476.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str. F0310] Length = 227 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 43/221 (19%), Positives = 87/221 (39%), Gaps = 6/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + ++G + D+ ++ L G Sbjct: 5 ILVVDDDLALAEMIGIVLQNEGFRVVFCGDGSQALAQFQEHHPDLVLLDVML--PGMDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R IR S VP++ ++ + ++G DD V KP +E++ARV A R Sbjct: 63 DVCRAIRHVSDVPIVMLTARSDTSDVVTGLEAGADDYVPKPFKPKELVARVRARLRGRDD 122 Query: 122 SNNRAETGPIR--VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + G + G V L E +L L K ++ ++ ++G Sbjct: 123 NQADEGITLQDLSIDVAGHVVQRDGHVIALTPLEFDLLATLARAPWKVFSREELLEQVWG 182 Query: 180 LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219 + A + +V H+ +LR K+ + + V + R +GY Sbjct: 183 -YRHAADTRLVNVHVQRLRSKIERDPEKPELVVTVRGVGYR 222 >gi|296453514|ref|YP_003660657.1| winged helix family two component transcriptional regulator [Bifidobacterium longum subsp. longum JDM301] gi|296182945|gb|ADG99826.1| two component transcriptional regulator, winged helix family [Bifidobacterium longum subsp. longum JDM301] Length = 256 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 56/230 (24%), Positives = 101/230 (43%), Gaps = 13/230 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++ + +G + + E L + D+ ++ L G Sbjct: 26 ILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGGIDLVLLDLML--PGIDGT 83 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 L R IR S+VP+I ++ + + + G DD V KP RE+LAR+ A+ RR + Sbjct: 84 ALCRRIREQSRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVMRRNQA 143 Query: 121 --------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + G I + V+GE P +E +LEYLM N+G+ + + Q Sbjct: 144 TAQASGTVDDDIPLVCGDIAMQVGQHQVTVRGETVFFPLKEFELLEYLMQNKGRVMTRHQ 203 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221 + I+G D + ++ H+ ++R K+ + + R LGY ID Sbjct: 204 LIDRIWG-SDYVGDTKTLDVHVKRVRSKIEEDPAHPKYLTTVRGLGYKID 252 >gi|153854191|ref|ZP_01995499.1| hypothetical protein DORLON_01490 [Dorea longicatena DSM 13814] gi|149753240|gb|EDM63171.1| hypothetical protein DORLON_01490 [Dorea longicatena DSM 13814] Length = 229 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 46/225 (20%), Positives = 93/225 (41%), Gaps = 10/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD L+ G DG ++ E L D+ ++ L E Sbjct: 6 LVVDDEKLIVKGIRFSLEQDGYDVDCAYDGEEALKLAKENAYDIILLDVML--PKYDGFE 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH------HREILARVAAIY 116 + + IR +S VP+I ++ + D G DD + KP + + + R + Sbjct: 64 VCQQIREYSDVPIIMLTAKGDDMDKILGLDYGADDYITKPFNILEVKARIKAIMRRVSKR 123 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + + G +++ + R + + L +E +LE L N GK ++ + + Sbjct: 124 DKNQENEKVIVKGEMKIDCESRRVIIGEKEINLTAKEFDLLELLAMNPGKVYSRENLLNI 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++G ++ + V+ HI +LR+K+ N V +K +GY Sbjct: 184 VWG-YEYPGDARTVDVHIRRLREKIETNPSDPKYVYTKWGVGYYF 227 >gi|187778876|ref|ZP_02995349.1| hypothetical protein CLOSPO_02471 [Clostridium sporogenes ATCC 15579] gi|187772501|gb|EDU36303.1| hypothetical protein CLOSPO_02471 [Clostridium sporogenes ATCC 15579] Length = 232 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 44/227 (19%), Positives = 93/227 (40%), Gaps = 10/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + ++G + + + D+ ++ L G Sbjct: 6 ILIVDDEEHICELIKFNLENNGYECICALNGIDALNIVKEEKPDLVLLDLML--PGMDGY 63 Query: 62 ELPRIIRAHSQVPL---IGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AI 115 ++ + IR + + I I+ + + G DD + KP RE++ARV Sbjct: 64 DVCKEIRKDNNIATTSIIMITAKGEELDKVLGLELGADDYITKPFSVREMVARVKAVLRR 123 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + + G I + + +G+ L +E +LE L+ N+GK + + + Sbjct: 124 RTTINIESKSYVLGNIVIDFEKHSLTKEGKKIELTLKEFELLEVLIKNKGKVMTRDFLLD 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 I+G ++ E V+ HI LRKK+ + +++ R +GY + Sbjct: 184 TIWG-YEYIGETRTVDVHIRHLRKKIEDDDKNPKYIETIRGIGYRFN 229 >gi|226313781|ref|YP_002773675.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226096729|dbj|BAH45171.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 224 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 41/221 (18%), Positives = 95/221 (42%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ ++G ++ + S + ++ Sbjct: 4 IMVVDDDPHIRELVSVFLRNEGFTIVEAVDGQEALDKLESVAAQLVILDIM--MPNMDGW 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL R +R H PL+ ++ + F+ G DD + KP +E++ RV A+ +R ++ Sbjct: 62 ELCRKLREHYDFPLLMLTAKGETSQKIKGFELGTDDYLVKPFDPQELVVRVKALLKRYRI 121 Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + + + + +P +E +L L + G+ +++ Q+ I+G Sbjct: 122 AASHQVQAGKLILDRKTFAVASGTKTWTIPLKEFEMLFKLASYPGQTISREQLIEQIWG- 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +D E V+ HI++LR++ + + + R LGY ++ Sbjct: 181 YDFEGNERTVDVHINRLRERFPEAMYGFLIRTVRGLGYRLE 221 >gi|229171119|ref|ZP_04298714.1| hypothetical protein bcere0006_2500 [Bacillus cereus MM3] gi|228612357|gb|EEK69584.1| hypothetical protein bcere0006_2500 [Bacillus cereus MM3] Length = 237 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 43/228 (18%), Positives = 89/228 (39%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD +++ + ++ + E L + ++ ++ + Sbjct: 6 ILIADDDKEIRNLLKIYLERELYMVDTAVNGEEALQLFNQNNYNLVILDLM--MPKVDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 E+ R +R + VP++ ++ + G DD + KP E++ARV A+ RR Sbjct: 64 EVCRKLRDKTNVPILMLTAKDHEIDKILGLSIGADDYITKPFSIHEVVARVKALMRRFLV 123 Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + + E L +E +L++ +N G+ KTQ+ Sbjct: 124 LGSNTTAQEKTILAFKGLTIDLNTYTVHTNKEEISLTGKELELLKFFTSNPGQVFTKTQL 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 F ++ + ++N V HI KLRKK+ N + + +GY Sbjct: 184 FRNVWD-DNYIEDDNTVMVHIRKLRKKIEINPSNPKFIQTVWGIGYKF 230 >gi|295394466|ref|ZP_06804689.1| response regulator [Brevibacterium mcbrellneri ATCC 49030] gi|294972645|gb|EFG48497.1| response regulator [Brevibacterium mcbrellneri ATCC 49030] Length = 226 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 57/225 (25%), Positives = 100/225 (44%), Gaps = 8/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + D L G +G + S D+ ++ L G Sbjct: 4 ILLVEDEESISDPLAYLLGKEGYDVTVAADGLQALAEFDSHGADLVLLDLML--PGASGT 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +RA S+VP+I ++ S + + G DD V KP RE+LAR+ A+ RR Sbjct: 62 EVCRQLRAKSKVPIIMLTAKDSEIDKVVGLELGADDYVTKPYSSRELLARIRAVMRRNTE 121 Query: 122 SNNRAETGPI----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 S++ + R+ + V+G LP +E +LE L+ N G+ + + Q+ I Sbjct: 122 SSDIDDGVLEAGGVRIDVERHVASVRGSELALPLKEFELLEMLVRNAGRVMTRGQLIDRI 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 +G D + ++ H+ +LR K+ + + R LGY + Sbjct: 182 WGQ-DYVGDTKTLDVHVKRLRAKIEETPSEPKLLVTVRGLGYKFE 225 >gi|289643472|ref|ZP_06475591.1| two component transcriptional regulator, winged helix family [Frankia symbiont of Datisca glomerata] gi|289506724|gb|EFD27704.1| two component transcriptional regulator, winged helix family [Frankia symbiont of Datisca glomerata] Length = 290 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 45/223 (20%), Positives = 92/223 (41%), Gaps = 8/223 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD V + + G ++ + + D+ ++ L G +E Sbjct: 56 LVVDDDPTVAEVVDRYLRNAGFDVDRAADGLTALRMAETTVPDLVVLDLML--PGIDGIE 113 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +R VP+I ++ + ++G DD V KP RE+ RV ++ RR Sbjct: 114 VCRRLREQRPVPVIMLTARGEEADRVAGLETGADDYVTKPFSPRELTLRVRSVLRRAAEP 173 Query: 123 NNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + G + V + R G L RE +L +L+ + G+ ++++ ++G Sbjct: 174 PRASGALHAGMLVVDAAARTVTRHGVALSLTVREFDLLAFLLRHPGRAFTRSELLEQVWG 233 Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 + + V HI +LR+K+ + + + +GY D Sbjct: 234 W--SYGDPSTVTVHIRRLREKIEDDPTAPRMLVTVWGVGYRYD 274 >gi|126650116|ref|ZP_01722349.1| DNA-binding response regulator ResD [Bacillus sp. B14905] gi|169827294|ref|YP_001697452.1| transcriptional regulatory protein [Lysinibacillus sphaericus C3-41] gi|126593288|gb|EAZ87250.1| DNA-binding response regulator ResD [Bacillus sp. B14905] gi|168991782|gb|ACA39322.1| Transcriptional regulatory protein [Lysinibacillus sphaericus C3-41] Length = 240 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 36/231 (15%), Positives = 84/231 (36%), Gaps = 14/231 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD ++ +G ++ + E ++ + LE Sbjct: 10 LVVDDEDRIRRLLKMYLEREGYLVDEAENGEQAIEKSLEKEYHCILLDIM--MPEKDGLE 67 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARVA 113 + IR + P+I ++ + F+ G DD + KP RE ++ Sbjct: 68 VCAEIRERAATPIILLTAKGEEANRVQGFELGADDYIVKPFSPREVVLRVKAILRRSQAF 127 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + S + + + D +G L +E +L +L + K + Q+ Sbjct: 128 SPTTNASSSKDLVVFQHLMIDHDAHRVTAEGIEVNLTPKEYELLYFLAKSPDKVFDREQL 187 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSIDW 222 ++ +D + V++H+ +LR+KL ++ + + +GY + Sbjct: 188 LKEVW-HYDFFGDLRTVDTHVKRLREKLNRVSENAAKMIVTVWGVGYKFEV 237 >gi|228993316|ref|ZP_04153232.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus pseudomycoides DSM 12442] gi|228999369|ref|ZP_04158948.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus mycoides Rock3-17] gi|229006924|ref|ZP_04164554.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus mycoides Rock1-4] gi|228754324|gb|EEM03739.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus mycoides Rock1-4] gi|228760314|gb|EEM09281.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus mycoides Rock3-17] gi|228766384|gb|EEM15027.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus pseudomycoides DSM 12442] Length = 238 Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 45/232 (19%), Positives = 90/232 (38%), Gaps = 14/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + G + E ++ R D+ ++ L + Sbjct: 5 ILVVDDEEFILTLIEFNLQQAGFEVITAMDGEVALHKATTERPDLIILDLML--PKMDGM 62 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILAR 111 E+ + +R P++ ++ + + G DD + KP RE + Sbjct: 63 EVCKELRLQRIMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTK 122 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + N +R+ + + QGE L +E +L YL N+G+ + + Sbjct: 123 LQDEPVSEVQDENSINIYDLRILPEFYEAYFQGEKLELTPKEFELLVYLARNKGRVLTRD 182 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 Q+ SA++ +D A + +V+ HIS LR K+ + + R LGY ++ Sbjct: 183 QLLSAVW-NYDFAGDTRIVDVHISHLRDKIEKNTKKPAYIKTIRGLGYKLEE 233 >gi|226315498|ref|YP_002775394.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226098448|dbj|BAH46890.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 236 Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 48/226 (21%), Positives = 94/226 (41%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D F +G + + + R D+ ++ L G + Sbjct: 4 LLVVDDEKPIADILKFTFEKEGYQVVCAYDGDEALVVVKDERPDLILLDVML--PGRDGM 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115 ++ R +R VP+I ++ S + + G DD V KP RE+ R Sbjct: 62 DVCRTVRQTYDVPIIMLTAKDSELDKVLGLELGADDYVTKPFSTRELVARVKAHLRRNRS 121 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 K S + + + + E GE L RE +L YL ++G+ + + + Sbjct: 122 KVEEKDSQHVLRVHELEIDLNSYTVEKVGEALELTHREFELLVYLARHQGQVLTREHLLQ 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 +++G FD + V+ I +LR+K+ + + ++R LGY++ Sbjct: 182 SVWG-FDYFGDVRTVDVTIRRLREKIEDDPSQPKYIITRRGLGYTL 226 >gi|317968094|ref|ZP_07969484.1| two-component response regulator [Synechococcus sp. CB0205] Length = 249 Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 44/228 (19%), Positives = 92/228 (40%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ G + + + D+ ++ Sbjct: 12 ILVVDDEPSIRRILETRLSMIGYQVVTACDGQEALEAFRNTNPDLVVLDVM--MPKLDGY 69 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 + + +R S VP++ ++ + + + G DD V KP +E+ AR+ + RR+ Sbjct: 70 GVCQELRKESDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRIGK 129 Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 ++ + IR+ ++ R E L E +LE L+ G+ ++ +I Sbjct: 130 EGAAGIPNSGVIQINEIRIDTNKRQVFRGDERIRLTGMEFSLLELLVGRSGEPFSRGEIL 189 Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 ++G + V+ VV+ HIS+LR KL + + + + R GY Sbjct: 190 KEVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGYLF 237 >gi|294501112|ref|YP_003564812.1| two-component response regulator ResD [Bacillus megaterium QM B1551] gi|294351049|gb|ADE71378.1| two-component response regulator ResD [Bacillus megaterium QM B1551] Length = 238 Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 40/232 (17%), Positives = 81/232 (34%), Gaps = 14/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L+DD ++ +G +E D+ ++ G + Sbjct: 7 LLLVDDEDRIRRLLKMYLEKEGYIIEEAADGHEAIEKALHIDYDLIVLDLM--MPGIDGI 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112 E+ + IR P+I ++ + F+ G DD + KP RE + Sbjct: 65 EVCKQIREKKATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKALLRRSSQ 124 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 A + N + + +D G+ L +E +L YL K + Q Sbjct: 125 ATFIQPETSVKNLIVFDHLTIDNDAHRVTADGKEVNLTPKEYELLCYLAKTPDKVYDREQ 184 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKL--GFDPVDSKRFLGYSIDW 222 + ++ +D + V++H+ +LR+KL + + +GY + Sbjct: 185 LLREVW-HYDFFGDLRTVDTHVKRLREKLNRVSSQAAKMIVTVWGVGYKFEV 235 >gi|163839443|ref|YP_001623848.1| two-component response regulator [Renibacterium salmoninarum ATCC 33209] gi|162952919|gb|ABY22434.1| two-component response regulator [Renibacterium salmoninarum ATCC 33209] Length = 241 Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 48/225 (21%), Positives = 90/225 (40%), Gaps = 8/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D L+ G +E N L S++ D+ ++ L G Sbjct: 17 ILLVEDEELIAQVVRDYLVKAGYQVELANDGFTALHLASASNPDLIILDRML--PGLDGA 74 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR +P+I ++ + + + G DD V KP+ RE++ RV ++ RR Sbjct: 75 EVCRRIRQTMSMPIILLTALGTEDDRILGLEMGADDYVTKPVSPRELVLRVNSVLRRSVK 134 Query: 122 SNNRAETGP---IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + R + G L RE +L + + + ++ + A++ Sbjct: 135 EFTPEPVVELAGFVLNPASRVVSLNGVDLALTAREFDLLAFFLRRPNQVFSREDLIRAVW 194 Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 G + + V H+ +LR+K+ N + + R LGY D Sbjct: 195 GWD--FGDLSTVTVHVRRLREKIEQNPTQPLLLHTVRGLGYRFDV 237 >gi|110679874|ref|YP_682881.1| phosphate regulon transcriptional regulatory protein PhoB [Roseobacter denitrificans OCh 114] gi|109455990|gb|ABG32195.1| phosphate regulon transcriptional regulatory protein PhoB [Roseobacter denitrificans OCh 114] Length = 229 Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 47/221 (21%), Positives = 92/221 (41%), Gaps = 4/221 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61 ++++D ++ +G ++ + E L D+ ++ + G +V Sbjct: 9 LVVEDEPAQREVLAYNLEAEGFAVSRAENGEEAMMLVDETAPDLIVLDWMMPNLSGIEVC 68 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + +P+I +S + ++G DD V KP E++ARV + RR++ Sbjct: 69 RRLKTRSETRAIPIIMLSARSEEVDRVRGLETGADDYVIKPYSIVELMARVRSQLRRVRP 128 Query: 122 SNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + E I + + L E R+L M G+ ++ Q+ ++G Sbjct: 129 AATGGQLEYEDIVLNAASHRVSRGENELKLGPTEFRLLSTFMEKPGRVFSREQLLDRVWG 188 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D V+ V+ HI +LRK L G DP+ + R GY++ Sbjct: 189 R-DIYVDTRTVDVHIGRLRKALTQFGGSDPLRTVRGAGYAL 228 >gi|74316234|ref|YP_313974.1| two component transcriptional regulator [Thiobacillus denitrificans ATCC 25259] gi|74055729|gb|AAZ96169.1| Two component Transcriptional regulator, Winged helix family [Thiobacillus denitrificans ATCC 25259] Length = 230 Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 88/224 (39%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D +++ G + E + DV ++ L G + Sbjct: 5 ILLVEDEPGIQELLKFNLTQAGHQVTAAGDAEHALKFLKTTLPDVILLDWML--PGMSGI 62 Query: 62 ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIY 116 +L R +R + VP+I ++ + + D+G DD + KP RE+ + Sbjct: 63 DLCRRLRGDARYQPVPIIMLTARGEERDKVLGLDTGADDYITKPFSPRELVSRIKAVLRR 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 R +++ E +R+ + +G L E R+L + M + + + Q+ Sbjct: 123 RAPQMTEEAVEVAGLRLDPVSHRVQGKGIALELGPTEFRLLHFFMTHPERVYTRPQLLDQ 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G D VEE V+ HI +LR L V + R GY Sbjct: 183 VWG-DDVFVEERTVDVHIRRLRLALEPSGHAALVQTVRGSGYRF 225 >gi|229065125|ref|ZP_04200418.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH603] gi|228716154|gb|EEL67873.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH603] Length = 234 Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 53/227 (23%), Positives = 101/227 (44%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + + + + + D+ ++ L G+ L Sbjct: 5 ILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIML--PGKDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR S++P+I ++ S + + G DD V KP RE+LARV A RR + Sbjct: 63 EVCREIRKSSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQ 122 Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N GPI + S+ + E L RE +L YL + G+ + + + Sbjct: 123 GGAAEKEENTEMVIGPIVINSNAYSVTKREESIELTHREFELLHYLAKHLGQVMTREHLL 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++G +D + V+ + +LR+K+ + + ++R +GY + Sbjct: 183 QTVWG-YDYFGDVRTVDVTVRRLREKVEDNPSHPTLIVTRRGVGYYL 228 >gi|284990844|ref|YP_003409398.1| winged helix family two component transcriptional regulator [Geodermatophilus obscurus DSM 43160] gi|284064089|gb|ADB75027.1| two component transcriptional regulator, winged helix family [Geodermatophilus obscurus DSM 43160] Length = 231 Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 51/221 (23%), Positives = 93/221 (42%), Gaps = 6/221 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++I+D ++ +G+ + S E + D+ ++ L G LE Sbjct: 12 LIIEDDDRIRRVVSITLRREGLEVTEAGSGEEGLARLAERPYDIVLLDLVL--PGRSGLE 69 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA--AIYRRLK 120 + R IR S P+I ++ + ++G DD V KP E+ AR+ A Sbjct: 70 VCREIRRVSTTPVIMVTARADSSDVIAGLEAGADDYVTKPFVAEELSARIRALARRTGGS 129 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 R G + + GEV PL R E +L L RG+ ++ ++ ++G Sbjct: 130 GPRPRIVVGDLEIAPADGVVTRGGEVVPLTRTEFTLLLELATERGRVFSREELLERVWG- 188 Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 +D + +V+ H+ +LRKK+ + V + R +GY + Sbjct: 189 YDYFGDSRLVDVHVRRLRKKVEADPAAPTVVTTVRGMGYRL 229 >gi|157376435|ref|YP_001475035.1| two component transcriptional regulator [Shewanella sediminis HAW-EB3] gi|157318809|gb|ABV37907.1| two component transcriptional regulator, winged helix family [Shewanella sediminis HAW-EB3] Length = 229 Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 35/224 (15%), Positives = 85/224 (37%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D +++ + G + + + S D+ ++ G + Sbjct: 5 ILIVEDELAIREMLTFVLEQHGFTTTAAEDFDSALEMLSEPYPDLILLDWM--FPGGSGI 62 Query: 62 ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIY 116 +L + +R Q+P+I ++ + + + G DD + KP +E+ + Sbjct: 63 QLAKRLRQDEFTRQIPIIMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARIKAVMRR 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + + V +V + E R+L + M + + ++ Q+ Sbjct: 123 SSPTSLEEPIDVQGLMLDPTSHRVMVDEQVLEMGPTEFRLLHFFMTHPERVYSREQLLDN 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + VE+ V+ HI +LRK + + + R GY Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKAVEPSGHDRLIQTVRGAGYRF 225 >gi|221633576|ref|YP_002522802.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Thermomicrobium roseum DSM 5159] gi|221156239|gb|ACM05366.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Thermomicrobium roseum DSM 5159] Length = 239 Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 48/229 (20%), Positives = 97/229 (42%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D ++ +G S+ ++ E + AR D+ ++ L G Sbjct: 4 ILLVEDDDTLQATIRYNLEREGYSVIVADAGEAALEQAAFARPDLVILDIML--PGLDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI---------LARV 112 ++ R +R S VP++ ++ + + + G DD + KP RE+ + Sbjct: 62 QVCRQLREQSTVPILILTARDTEVDRVLGLELGADDYLTKPFSMRELLARVKALLRRREL 121 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 A S + E GP+R+ + R +G L RE +L YL +R + + Sbjct: 122 LARELAAGFSPDILEIGPLRIDLEQRRVWREGREVALKPREFDLLAYLARHRERVCRSEE 181 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 + A++G +D + + H+ LR+KL + +++ R +GY + Sbjct: 182 LLRAVWG-YDTFGDFRTLAVHVHGLREKLEDDPRRPRLIETVRGIGYRL 229 >gi|168178458|ref|ZP_02613122.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|182670774|gb|EDT82748.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] Length = 233 Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 46/226 (20%), Positives = 87/226 (38%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D A + + E L + ++ L Sbjct: 7 ILVVDDEERILDVVKAYLEKEDYEVITAMDGEEAIKLFKETSFHLIILDLML--PKLSGE 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ IR S VP+I ++ + L+ G DD + KP RE++ARV A+ RR Sbjct: 65 EVCSKIRESSNVPIIMLTAKVEEEDKLEGLSIGADDYLTKPFSVRELVARVKALIRRAYR 124 Query: 122 SNNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 I +G+V L E ++L L+ N G+ + Q+ Sbjct: 125 GKYPLAEHLILNDGDLEVDIRKMKVLKKGKVVTLTPYEFKVLVSLLNNPGQVFTREQLVE 184 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 +G +D + V+++I +R+K+ + + + + +GY Sbjct: 185 QAFG-YDYESFDRTVDTYIKNIRQKIEDNPKAPNYITTVYGVGYRF 229 >gi|299538375|ref|ZP_07051658.1| transcriptional regulatory protein [Lysinibacillus fusiformis ZC1] gi|298725962|gb|EFI66554.1| transcriptional regulatory protein [Lysinibacillus fusiformis ZC1] Length = 238 Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 36/231 (15%), Positives = 84/231 (36%), Gaps = 14/231 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD ++ +G ++ + E ++ + LE Sbjct: 8 LVVDDEDRIRRLLKMYLEREGYLVDEAENGEQAIEKSLEKEYHCILLDIM--MPEKDGLE 65 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARVA 113 + IR + P+I ++ + F+ G DD + KP RE ++ Sbjct: 66 VCAEIRERAATPIILLTAKGEEANRVQGFELGADDYIVKPFSPREVVLRVKAILRRSQAF 125 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + S + + + D +G L +E +L +L + K + Q+ Sbjct: 126 SPTTNASSSKDLVVFQHLMIDHDAHRVTAEGIEVNLTPKEYELLYFLAKSPDKVFDREQL 185 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSIDW 222 ++ +D + V++H+ +LR+KL ++ + + +GY + Sbjct: 186 LKEVW-HYDFFGDLRTVDTHVKRLREKLNRVSENAAKMIVTVWGVGYKFEV 235 >gi|260590120|ref|ZP_05856033.1| DNA-binding response regulator VicR [Blautia hansenii DSM 20583] gi|331084377|ref|ZP_08333481.1| hypothetical protein HMPREF0992_02405 [Lachnospiraceae bacterium 6_1_63FAA] gi|260539632|gb|EEX20201.1| DNA-binding response regulator VicR [Blautia hansenii DSM 20583] gi|330401641|gb|EGG81222.1| hypothetical protein HMPREF0992_02405 [Lachnospiraceae bacterium 6_1_63FAA] Length = 229 Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 50/225 (22%), Positives = 97/225 (43%), Gaps = 10/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD L+ G +G+ ++ E D+ ++ L LE Sbjct: 6 LVVDDEKLIVKGIRFSLEQEGMEVDCAYDGEEALEKAKEKEYDMILLDIML--PKLTGLE 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + IR S VP+I ++ + + G DD + KP + E+ AR+ AI RR++ Sbjct: 64 VCQQIREFSSVPIIMLTAKGEDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRMRKE 123 Query: 123 NNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + G ++ +GR + G+ L +E +LE L N K ++ + + Sbjct: 124 EAKESFGKTLVSGDLKLDCEGRRVFIAGKEINLTAKEFDVLELLAKNPNKVYSRENLLNL 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++G ++ + V+ HI +LR+K+ V +K +GY Sbjct: 184 VWG-YEYPGDVRTVDVHIRRLREKIEAVPSDPKYVHTKWGIGYYF 227 >gi|89897137|ref|YP_520624.1| hypothetical protein DSY4391 [Desulfitobacterium hafniense Y51] gi|89336585|dbj|BAE86180.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 237 Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 45/222 (20%), Positives = 89/222 (40%), Gaps = 8/222 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD V + +G + + + DV ++ L G+ L Sbjct: 8 LVVDDDQNVLELVKLYGEREGFEVVAVDDGDLVLAAFDRENPDVVILDIML--PGQDGLS 65 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYRR 118 L R +RA +P+I ++ + + G DD V KP R I A + Sbjct: 66 LCRRLRAVRMIPIIMLTAKGEEADRVLGLEMGADDYVAKPFSPRELVARIKAVLRRSQAA 125 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 +N + + + + +D R V + RE +L +L N + + ++ A++ Sbjct: 126 DPATNWQLKYPGLEIRADIRKVLVDAAESEVTPREFDLLYHLAQNPQRVFTREELLGAVW 185 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G +D ++ V+ HI +LR KL + + + + +GY Sbjct: 186 G-YDYFGDQRTVDVHIRRLRTKLASLP-HEYLQTVWGVGYKF 225 >gi|295706459|ref|YP_003599534.1| two-component response regulator ResD [Bacillus megaterium DSM 319] gi|294804118|gb|ADF41184.1| two-component response regulator ResD [Bacillus megaterium DSM 319] Length = 238 Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 40/232 (17%), Positives = 80/232 (34%), Gaps = 14/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L+DD ++ +G +E D+ ++ G + Sbjct: 7 LLLVDDEDRIRRLLKMYLEKEGYIIEEAADGHEAIEKALHIDYDLIVLDLM--MPGIDGI 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112 E + IR P+I ++ + F+ G DD + KP RE + Sbjct: 65 EACKQIREKKATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKALLRRSSQ 124 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 A + N + + +D G+ L +E +L YL K + Q Sbjct: 125 ATFIQPETSVKNLIVFDHLTIDNDAHRVTADGKEVNLTPKEYELLCYLAKTPDKVYDREQ 184 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKL--GFDPVDSKRFLGYSIDW 222 + ++ +D + V++H+ +LR+KL + + +GY + Sbjct: 185 LLREVW-HYDFFGDLRTVDTHVKRLREKLNRVSSQAAKMIVTVWGVGYKFEV 235 >gi|213691278|ref|YP_002321864.1| two component transcriptional regulator, winged helix family [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213522739|gb|ACJ51486.1| two component transcriptional regulator, winged helix family [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320457342|dbj|BAJ67963.1| two-component response regulator [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 256 Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 56/230 (24%), Positives = 101/230 (43%), Gaps = 13/230 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++ + +G + + E L + D+ ++ L G Sbjct: 26 ILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGGIDLVLLDLML--PGIDGT 83 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 L R IR S+VP+I ++ + + + G DD V KP RE+LAR+ A+ RR + Sbjct: 84 ALCRRIREQSRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVMRRNQA 143 Query: 121 --------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + G I + V+GE P +E +LEYLM N+G+ + + Q Sbjct: 144 TAQASGTVDDDIPLVCGDIAMQVGQHQVTVRGETVFFPLKEFELLEYLMQNKGRVMTRHQ 203 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221 + I+G D + ++ H+ ++R K+ + + R LGY ID Sbjct: 204 LIDRIWG-SDYVGDTKTLDVHVKRVRSKIEEDPAHPKYLTTVRGLGYKID 252 >gi|332653701|ref|ZP_08419445.1| DNA-binding response regulator YycF [Ruminococcaceae bacterium D16] gi|332516787|gb|EGJ46392.1| DNA-binding response regulator YycF [Ruminococcaceae bacterium D16] Length = 237 Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 46/231 (19%), Positives = 87/231 (37%), Gaps = 15/231 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + D +G L D+ ++ L G E Sbjct: 6 LIVEDEQNIVDILSFNLEREGYDTLEAYDGNTGLQLALEQNPDLVLLDLML--PGMDGFE 63 Query: 63 LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R IR S VP++ ++ + + G DD + KP RE+LARV A RR + Sbjct: 64 VCRRIRETGSAVPILMLTAREEEADKVLGLELGADDYITKPFGMRELLARVKANIRRSAM 123 Query: 122 SNNRAETGPI-----------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + + E V + G L +RE ++ YL + GK ++ Sbjct: 124 APAQGEQAQPASGKRLELGRVVVDQEKATVYKDGNPLELTQREYDLICYLASQPGKVFSR 183 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 + ++ + V+ + +LR+K+ + + +KR +GY Sbjct: 184 EALMEHVWNYEGYVGDVRAVDVAVRRLREKIEDDPASPKFIVTKRGMGYLF 234 >gi|229818366|ref|ZP_04448647.1| hypothetical protein BIFANG_03668 [Bifidobacterium angulatum DSM 20098] gi|229784236|gb|EEP20350.1| hypothetical protein BIFANG_03668 [Bifidobacterium angulatum DSM 20098] Length = 233 Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 53/230 (23%), Positives = 99/230 (43%), Gaps = 12/230 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++ + +G + + E L + D+ ++ L G Sbjct: 4 ILIVEDEESYREPLVYQLTREGYEVSAAATGEEGLELFTHGGIDLVLLDLML--PGIDGT 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R IR S+VP+I ++ + + + G DD V KP RE+LAR+ A+ RR + Sbjct: 62 TLCRRIREQSRVPIIMLTAKSTEIDKVVGLEIGADDYVTKPYSFRELLARIRAVLRRNQS 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFP--------LPRRERRILEYLMANRGKRVAKTQI 173 + + + G G+ P +E +LEYLM N+G+ + + Q+ Sbjct: 122 AQQQGSADDDVPLTCGDIVMRVGQHQVIVRGESVFFPLKEFELLEYLMQNKGRVLTRHQL 181 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDW 222 I+G D + ++ H+ ++R K+ + + R LGY ID Sbjct: 182 IDRIWGA-DYVGDTKTLDVHVKRVRAKIEEEPSHPKYLSTVRGLGYKIDE 230 >gi|333023057|ref|ZP_08451121.1| putative two-component system, response regulator [Streptomyces sp. Tu6071] gi|332742909|gb|EGJ73350.1| putative two-component system, response regulator [Streptomyces sp. Tu6071] Length = 250 Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 44/225 (19%), Positives = 92/225 (40%), Gaps = 10/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D A ++ G G ++ + + S R D+ ++ L Sbjct: 17 LVVEDDASIRTLLTTALGAAGYTVASAVDGQAAMFQAGSRRPDLIVLDVML--PDTDGFR 74 Query: 63 LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI------ 115 L R +RA P++ ++ ++ + SG DD V KP H +E+L RV AI Sbjct: 75 LTRELRAQGVYTPVLFLTARAGVEDRITGLSSGGDDYVTKPFHVQEVLLRVRAILRRAGA 134 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + + G L E R+L +A+ + + K +I Sbjct: 135 PASTAPVRPPLRYAGLSLDESTHEVRHAGSPLRLSPTEFRLLACFLAHPERVLEKAEILQ 194 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +D + + +V++++ LR+KL + + + R +GY + Sbjct: 195 RVW-RYDFSGDTRIVDTYVKNLRRKLDHGGAPALLHTVRGVGYCL 238 >gi|260893730|ref|YP_003239827.1| two component transcriptional regulator, winged helix family [Ammonifex degensii KC4] gi|260865871|gb|ACX52977.1| two component transcriptional regulator, winged helix family [Ammonifex degensii KC4] Length = 229 Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 45/225 (20%), Positives = 92/225 (40%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D +++ + +G + D+ ++ +L L Sbjct: 6 ILVVEDDPRIREIITRILSCEGYQVITSTGGWEALTRVQKESPDLVILDLWL--PDLDGL 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +RA +P+I +S + F G DD V KP E++ RV A+ RR++ Sbjct: 64 EVCRQLRAKYAIPVIIVSARGEEADKIAGFTLGADDYVTKPFSPAELVLRVKAVLRRVQG 123 Query: 122 SNNRAETGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 S++ IR + R E+ G L RE +L L ++ + ++ Q+ + Sbjct: 124 SDSWKGREVIRVRGLVIDRASRTVELNGVPINLTAREFDLLWILASHPNRVFSRDQLLNL 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 ++ + + V I +LR+KL + + + +GY Sbjct: 184 VW-KNEFGADPATVTVLIRRLRQKLEKDPEKPELIKTVWGVGYKF 227 >gi|323135689|ref|ZP_08070772.1| two component transcriptional regulator PhoB, winged helix family [Methylocystis sp. ATCC 49242] gi|322398780|gb|EFY01299.1| two component transcriptional regulator PhoB, winged helix family [Methylocystis sp. ATCC 49242] Length = 247 Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 54/224 (24%), Positives = 97/224 (43%), Gaps = 4/224 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++++D A + +G +E ++ + E + D+ ++ L G G ++ Sbjct: 20 ILVVEDEASLALLLTYNLEAEGYQVEHVDNGDEAELRIAETPPDLVILDWMLPGVSGLEI 79 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 R A +P+I ++ + G DD V KP E++ARV A+ RR + Sbjct: 80 CRRLRAREACRDMPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELMARVRALLRRAR 139 Query: 121 VSNNRAETG--PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++ I + D G L E R+LEY M G+ + Q+ +++ Sbjct: 140 PERVASKLRLGDIDLDRDTHRVRRSGREIHLGPTEYRLLEYFMEKPGRVFTRAQLLDSVW 199 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 G+ E ++E V+ H+ +LRK L DP+ + R GYS D Sbjct: 200 GMSAE-IDERTVDVHVGRLRKALIRGREKDPIRTVRGAGYSFDE 242 >gi|228899004|ref|ZP_04063278.1| hypothetical protein bthur0014_2330 [Bacillus thuringiensis IBL 4222] gi|228963367|ref|ZP_04124529.1| hypothetical protein bthur0004_2510 [Bacillus thuringiensis serovar sotto str. T04001] gi|228796327|gb|EEM43773.1| hypothetical protein bthur0004_2510 [Bacillus thuringiensis serovar sotto str. T04001] gi|228860638|gb|EEN05024.1| hypothetical protein bthur0014_2330 [Bacillus thuringiensis IBL 4222] Length = 237 Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 42/228 (18%), Positives = 88/228 (38%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L DD +++ + ++ + E L + ++ ++ + Sbjct: 6 ILLADDDKEIRNLLKIYLERELYMVDTAINGEEALHLFNQNNYNLVILDLM--MPKIDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 E+ + +R + VP++ ++ + G DD + KP E++ARV A+ RR Sbjct: 64 EVCKKLRYKTNVPILMLTAKDHEIDKILGLSIGADDYITKPFSIHEVIARVKALMRRFLV 123 Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + E L +E +L++ +N G+ KTQ+ Sbjct: 124 LGSSNTAQQKTTLSFKGLTFNLNTYTVHTNKEEINLTGKELELLKFFTSNPGQVFTKTQL 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 F ++ + ++N V HI KLRKK+ + + + +GY Sbjct: 184 FQNVWD-DNYIEDDNTVMVHIRKLRKKIEIDPSNPKFIQTIWGIGYKF 230 >gi|261408624|ref|YP_003244865.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|329927373|ref|ZP_08281632.1| heme response regulator HssR [Paenibacillus sp. HGF5] gi|261285087|gb|ACX67058.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] gi|328938512|gb|EGG34897.1| heme response regulator HssR [Paenibacillus sp. HGF5] Length = 224 Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 45/223 (20%), Positives = 94/223 (42%), Gaps = 6/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD A +++ +DG + + + S D+ ++ + Sbjct: 4 ILVADDDANIRELVCLFLRNDGFTTVEAADGKEALSVYGSTPVDLVVLDIMMPM--MDGW 61 Query: 62 ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L + + RA+ +PL+ ++ + F+ G DD + KP E+ RV A+ +R + Sbjct: 62 TLCKELRRANPDLPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVKALLKRYR 121 Query: 121 VSNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + + + E LP +E +L L G+ + Q+ I+G Sbjct: 122 IGSTQTIQFGNVILDRQTYKVSSGPETLTLPLKEFELLYKLAGTPGQVYTREQLIDQIWG 181 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + D A ++ V+ HI +LR++ F +++ R LGY ++ Sbjct: 182 I-DYAGDDRTVDVHIKRLRERFATTPDFR-IETVRGLGYRLEV 222 >gi|29830959|ref|NP_825593.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29608073|dbj|BAC72128.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 249 Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 39/221 (17%), Positives = 80/221 (36%), Gaps = 7/221 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD V + G ++ ++ D+ ++ L G LE Sbjct: 24 LVVDDDPTVAEVVSGYLDRAGYVVDRAEDGPTALARAAAHWPDLVVLDLML--PGMDGLE 81 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--ILARVAAIYRRLK 120 + R +R VP+I ++ + + G DD V KP RE + R Sbjct: 82 VCRRMRGRGPVPVIMLTARGDEDDRILGLEVGADDYVTKPFSPRELVLRVESVLRRTRPV 141 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + + R GE L RE +L + + + G+ ++ + ++G Sbjct: 142 TAPRPLHASGLALDPAARRATKDGEELALTIREFDLLAFFLRHPGRAFSREDLMREVWGW 201 Query: 181 FDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 + + V H+ +LR K+ + + + +GY Sbjct: 202 D--FGDLSTVTVHVRRLRGKVEDDPARPRLIQTVWGVGYRF 240 >gi|150389552|ref|YP_001319601.1| two component transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149949414|gb|ABR47942.1| two component transcriptional regulator, winged helix family [Alkaliphilus metalliredigens QYMF] Length = 234 Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 40/229 (17%), Positives = 84/229 (36%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ +G + S D+ ++ + G + Sbjct: 6 ILVVDDDEDIREIITLYLEKEGYQVILAMDGHQALECAFSFNPDLVILDMMI--PGLDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112 E+ + +R + P+I +S + +G DD ++KP E R+ Sbjct: 64 EVCQALRKNLSTPIIFLSCKSTPSDKSIGLIAGGDDYMSKPFDTMELLARIKAHLRRNRI 123 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 N R G + + D V G+ L +E ++L L N + + Q Sbjct: 124 LENSNYSNAQNKRLCYGDLTINLDNHSVVVYGQEIILSPKEFQLLTLLAKNPNRVFSNEQ 183 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 +F ++ + + V HIS +RKK+ + + + + +GY Sbjct: 184 LFETLW-ATESFGDHRTVMVHISNIRKKIERDAKKPALIQTVKGVGYKF 231 >gi|219667004|ref|YP_002457439.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219537264|gb|ACL19003.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 237 Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 45/222 (20%), Positives = 89/222 (40%), Gaps = 8/222 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD V + +G + + + DV ++ L G+ L Sbjct: 8 LVVDDDQNVLELVKLYGEREGFEVVAVDDGDLVLAAFDRENPDVVILDIML--PGQDGLS 65 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYRR 118 L R +RA +P+I ++ + + G DD V KP R I A + Sbjct: 66 LCRRLRAVRMIPIIMLTAKGEEADRVLGLEMGADDYVAKPFSPRELVARIKAVLRRSQAA 125 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 +N + + + + +D R V + RE +L +L N + + ++ A++ Sbjct: 126 DPATNWQLKYPGLEIRADIRKVLVDAAESEVTPREFDLLYHLAQNPQRVFTREELLGAVW 185 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G +D ++ V+ HI +LR KL + + + + +GY Sbjct: 186 G-YDYFGDQRTVDVHIRRLRTKLASLP-HEYLQTVWGVGYKF 225 >gi|326791208|ref|YP_004309029.1| transcriptional regulator [Clostridium lentocellum DSM 5427] gi|326541972|gb|ADZ83831.1| two component transcriptional regulator, winged helix family [Clostridium lentocellum DSM 5427] Length = 228 Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 43/225 (19%), Positives = 93/225 (41%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD L+ G +G ++ E + + DV ++ L L Sbjct: 5 ILVVDDEKLIVKGIKFSLEQEGWEVDAAYDGEEALNYVKNNKYDVMLLDVML--PKYDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAIY 116 ++ +++R S +P+I ++ + + G DD V KP + R + + Sbjct: 63 QVCQLVREFSNIPIIMLTAKGEDMDKIMGLEYGADDYVTKPFNILELKARIKAILRRSQH 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + E G +R+ + R ++ + L +E +LE + GK ++ Q+ Sbjct: 123 AEKVPNKKTIEVGELRLEVNSRRVFIKNQEMNLTAKEFDMLELFATHPGKVYSRDQLLDT 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 I+G + + V+ H+ +LR+K+ N + + +K +GY Sbjct: 183 IWGR-EYPGDVRTVDVHVRRLREKIEPNPGQPEYIYTKWGVGYYF 226 >gi|228906049|ref|ZP_04069939.1| hypothetical protein bthur0013_2340 [Bacillus thuringiensis IBL 200] gi|228853596|gb|EEM98363.1| hypothetical protein bthur0013_2340 [Bacillus thuringiensis IBL 200] Length = 237 Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 42/228 (18%), Positives = 89/228 (39%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD +++ + ++ + E L + ++ ++ + Sbjct: 6 ILIADDDKEIRNLLKIYLERELYMVDTAINGEEALHLFNQNNYNLVILDLM--MPKIDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + +R + VP++ ++ + G DD + KP E++ARV A+ RR V Sbjct: 64 EVCKKLRDKTNVPILMLTAKDHEIDKILGLSIGADDYITKPFSIHEVIARVKALMRRFLV 123 Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + E L +E +L++ +N G+ KTQ+ Sbjct: 124 LGSNNTAQEKTTLSFKGLTFNLNTYTVHTNKEEINLTGKELELLKFFTSNPGQVFTKTQL 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 F ++ + ++N V HI KLRKK+ + + + +GY Sbjct: 184 FQNVWD-DNYIEDDNTVMVHIRKLRKKIEIDPSNPKFIQTIWGIGYKF 230 >gi|318042861|ref|ZP_07974817.1| two-component system response regulator [Synechococcus sp. CB0101] Length = 269 Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 53/231 (22%), Positives = 93/231 (40%), Gaps = 16/231 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V+ + G + E L + D+ ++ L Sbjct: 26 LLVVDDEPAVRRVLVMRLQLAGYRVVCAEDGEEALTLFHQEQPDLVVLDVML--PKLDGF 83 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R +RA S VP+I +S ++ + D G DD + KP +E+ AR+A I RR+ Sbjct: 84 AVCRRLRAESCVPIIFLSALDAIAERVAGLDLGADDYLPKPFSPKELEARIATILRRVGR 143 Query: 122 SNNRAETGPIRV------------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 + AE ++ R GE L E +LE L G+ V Sbjct: 144 GSAAAEPREATPGQGVLRVGDLVVDTNRRQVTRDGERIGLTYTEFSLLELLFREPGRVVP 203 Query: 170 KTQIFSAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGY 218 + +I ++G A + VV+ ++++LR KL + + + R GY Sbjct: 204 RAEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGTGY 254 >gi|220903843|ref|YP_002479155.1| winged helix family two component transcriptional regulator [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868142|gb|ACL48477.1| two component transcriptional regulator, winged helix family [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 225 Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 92/224 (41%), Gaps = 10/224 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A +++ +G S+ L D+ ++ + G Sbjct: 5 ILIVEDEADIRELLRFNLEREGFSVLEAADGNEALRLARQHLPDLMLLDVMMPGP--DGF 62 Query: 62 ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IY 116 E+ R++ A + +P++ ++ + G DD V KP RE++ R+ A Sbjct: 63 EICRLLGAQAETAHIPVLMLTARGEEMDRVVGLSLGADDYVVKPFSVRELMLRIRAVLRR 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + E IR+ D E GE L E R+LE L+ + G + Q+ + Sbjct: 123 GTRSGESPVLERHGIRLRPDAHTAEAHGEELQLTATEFRLLEDLLRHAGSVRTREQLLNK 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + V++H+ +LR KL +++ R +GY I Sbjct: 183 VWG-YSFEGYARTVDTHVRRLRAKLG--HAASMLETVRGVGYRI 223 >gi|225377290|ref|ZP_03754511.1| hypothetical protein ROSEINA2194_02937 [Roseburia inulinivorans DSM 16841] gi|225210821|gb|EEG93175.1| hypothetical protein ROSEINA2194_02937 [Roseburia inulinivorans DSM 16841] Length = 223 Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 49/225 (21%), Positives = 94/225 (41%), Gaps = 11/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D +++ + G + N L + R D+ ++ L Sbjct: 4 ILVVEDDFDIQELLQNFLQEAGYEVAVANDGVEALSLFAGERYDLIVLDIML--PKIDGY 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYR 117 + +IR S VP+I ++ + + D VDD + KP +L ++ R Sbjct: 62 GVCELIRKQSDVPIIMLTALSGEEDQIKGLDLQVDDYITKPFSMPVLLRKIAAVLRRSNR 121 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 G + + D V G F L ++E IL L+ ++G+ + + + + Sbjct: 122 ETDEKYQIITYGNLLLNCDSYTATVDGANFELTQKEFEILRELLTHQGRILTRQNLLDKL 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + +D +E VV++HI LRKKL G D + + R +GY +D Sbjct: 182 W-RYDFYGDERVVDTHIKNLRKKL----GIDFIQTIRGVGYKVDK 221 >gi|169829556|ref|YP_001699714.1| alkaline phosphatase synthesis transcriptional regulatory protein [Lysinibacillus sphaericus C3-41] gi|168994044|gb|ACA41584.1| Alkaline phosphatase synthesis transcriptional regulatory protein [Lysinibacillus sphaericus C3-41] Length = 238 Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 44/233 (18%), Positives = 89/233 (38%), Gaps = 15/233 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + G +E + + ++ ++ L + Sbjct: 5 ILVIEDEFSIATLLKYNLEQAGYLVETAADGQEGLEKAIDIQPNLILLDLML--PKLDGM 62 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILA 110 E+ + IR P+I ++ + + G DD + KP R Sbjct: 63 EVCKQIRQQRMNTPIIMLTAKDDEFDKVLGLELGADDYMTKPFSPREVLARVKAVLRRFT 122 Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + + + E G +RVF + + +Q E +E +L YL+ N+ + + + Sbjct: 123 QNVVSDEKDEPQEKMFEFGQLRVFPERFEVFLQDEALEFTPKEFELLIYLLENKNRVLTR 182 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDW 222 Q+ SA++ +D A + +V+ HIS LR K+ + + R LGY + Sbjct: 183 DQLLSAVW-KYDFAGDTRIVDVHISHLRDKIEENSRKPMFIKTIRGLGYKFEE 234 >gi|313902699|ref|ZP_07836097.1| two component transcriptional regulator, winged helix family [Thermaerobacter subterraneus DSM 13965] gi|313466996|gb|EFR62512.1| two component transcriptional regulator, winged helix family [Thermaerobacter subterraneus DSM 13965] Length = 235 Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 46/225 (20%), Positives = 92/225 (40%), Gaps = 8/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++ G ++ + R D+ ++ L G Sbjct: 3 ILVVDDEAPMRALLRLFLEQHGFAVSEAEDGYEALERVRTERPDLVLLDIML--PGIDGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117 + RI+R S VPLI ++ ++ + ++G DD + KP I A + R Sbjct: 61 AVCRILRRESDVPLIMLTARDDVRDRVSGLEAGADDYLVKPFAEEELLARIRAVLRRTPR 120 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 +R GP+ + R+ G L +E +L L + G+ + + +I + Sbjct: 121 VEGRPADRVIAGPLLIDVPAREAYCHGRRLNLTPKEFDLLALLARHPGQVLDRARIIERV 180 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 +G +D + V++H+ LR KL +++ R +GY ++ Sbjct: 181 WG-WDYDGDVRTVDTHVKTLRAKLVAAGCSRHLIETVRSIGYRLN 224 >gi|310827238|ref|YP_003959595.1| hypothetical protein ELI_1646 [Eubacterium limosum KIST612] gi|308738972|gb|ADO36632.1| hypothetical protein ELI_1646 [Eubacterium limosum KIST612] Length = 223 Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 47/221 (21%), Positives = 99/221 (44%), Gaps = 3/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + AL ++G S++ + E R D+ ++ L Sbjct: 4 ILIVEDERQIVKHLRALLEEEGFSVDTAATRAEAESALEGDRFDLILLDLML--PDGNGY 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L I P+I ++ + + F+ G DD + KP E++ARV RR Sbjct: 62 ALCTEILHRGNTPVIFLTALDDEASIVTGFNLGADDYITKPFKPMELVARVKNSLRRSGR 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + + G + V + G G+ L E R+L L+++RG+ ++++++ I+ Sbjct: 122 AQSVFQLGNLSVDTAGASVRRDGQEIVLSALEYRLLLTLLSHRGEVLSRSRLLQEIWDAS 181 Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 + V +N + +I +LR+K+ + + + R LGY ++ Sbjct: 182 GDFVNDNTLTVYIKRLREKIEKDPAEPRIIKTVRGLGYKVE 222 >gi|330836364|ref|YP_004411005.1| two component transcriptional regulator, winged helix family [Spirochaeta coccoides DSM 17374] gi|329748267|gb|AEC01623.1| two component transcriptional regulator, winged helix family [Spirochaeta coccoides DSM 17374] Length = 224 Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 40/223 (17%), Positives = 96/223 (43%), Gaps = 4/223 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ + +G ++ +++ D++ I+ Sbjct: 4 ILVVDDDPHLRELVRIILQKEGFAVYEAADGLEALSKLETSKADLAIIDLM--MPNMDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL + +RA +P++ ++ + F +G DD + KP E++ARV A+ +R ++ Sbjct: 62 ELCQELRASYDIPVLMLTAKGETAQKIKGFQAGADDYLVKPFEPLELMARVKALLKRYQI 121 Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 ++ + + F LP +E +L L G+ ++ + I+G Sbjct: 122 IASQNVQIGKLMMNRKNYEVIAGNMKFTLPLKEFELLFKLAGYPGRTFSRDTLIEDIWG- 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 + E ++ HI++LR++ + + + R LGY ++ + Sbjct: 181 YGFEGNERTLDVHINRLRQRFPEEKTDFRITTIRGLGYRLEVD 223 >gi|167746545|ref|ZP_02418672.1| hypothetical protein ANACAC_01255 [Anaerostipes caccae DSM 14662] gi|317471367|ref|ZP_07930721.1| response regulator receiver domain-containing protein [Anaerostipes sp. 3_2_56FAA] gi|167653505|gb|EDR97634.1| hypothetical protein ANACAC_01255 [Anaerostipes caccae DSM 14662] gi|316901118|gb|EFV23078.1| response regulator receiver domain-containing protein [Anaerostipes sp. 3_2_56FAA] Length = 228 Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 47/225 (20%), Positives = 95/225 (42%), Gaps = 10/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD L+ G D + ++ E L + D+ ++ L E Sbjct: 5 LVVDDEKLIVKGIKFSLEQDEMEVDCAYDGEEALGLAKENQYDIILLDVML--PKLTGYE 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH------HREILARVAAIY 116 + + IR S VP+I ++ + + G DD V KP + + + R + + Sbjct: 63 VCQAIREFSTVPIIMLTAKGDDMDKILGLEYGADDYVTKPFNILEVKARIKAILRRSVSH 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + E+ +++ D R + G+ L +E +LE L+ + K ++ + + Sbjct: 123 AAPAETPKVIESRGLKIDCDSRRVHINGKEVNLTAKEFDLLELLVFHPNKVYSREDLLNT 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 ++G +D + V+ HI +LR+K+ G D V +K +GY Sbjct: 183 VWG-YDYPGDARTVDVHIRRLREKIEVNPGVPDYVHTKWGVGYYF 226 >gi|119718265|ref|YP_925230.1| response regulator receiver [Nocardioides sp. JS614] gi|119538926|gb|ABL83543.1| response regulator receiver [Nocardioides sp. JS614] Length = 225 Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 49/224 (21%), Positives = 91/224 (40%), Gaps = 7/224 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D D + +G + + D+ ++ L G E Sbjct: 5 LVVEDEESYSDALAYMLRKEGYEVAIAANGNDALTEFDRNGADIVLLDLML--PGLPGTE 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRRL 119 + R IR S VP+I +S + + G DD V KP RE + V + Sbjct: 63 VCRQIRQTSSVPVIMVSAKDDEVDKVVGLELGADDYVTKPYSPRELVARIRAVLRRGQEP 122 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++ E GP+R+ + V G+ LP +E +LE + N G+ + + Q+ ++G Sbjct: 123 DLAPPTLEAGPVRMDVERHVVTVDGQAQRLPLKEFELLEMFLRNPGRVLTRGQLIDRVWG 182 Query: 180 LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 D + ++ H+ +LR K+ + + + R LGY D Sbjct: 183 -SDYVGDTKTLDVHVKRLRAKIEPDPGEPRYLVTVRGLGYKFDV 225 >gi|311064941|ref|YP_003971667.1| two-component response regulator [Bifidobacterium bifidum PRL2010] gi|310867261|gb|ADP36630.1| Two-component response regulator [Bifidobacterium bifidum PRL2010] Length = 228 Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 52/224 (23%), Positives = 94/224 (41%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++ + +G + S E L + D+ ++ L G Sbjct: 4 ILIVEDEESYREPLVYQLTREGYDVSAAASGEEGLELFTKGGIDLVLLDLML--PGIDGT 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118 L R IR S+VP+I ++ + + + G DD V KP RE + V + Sbjct: 62 ALCRRIREQSRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVLRRNQG 121 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + G I + V+GE P +E +LEYLM N+G+ + + Q+ I+ Sbjct: 122 AVDDDIPLVCGDISMQVGQHQVTVRGESVFFPLKEFELLEYLMQNKGRVMTRHQLIDRIW 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221 G D + ++ H+ ++R K+ + + R LGY ID Sbjct: 182 G-SDYVGDTKTLDVHVKRVRSKIEEDPAHPQYLTTVRGLGYKID 224 >gi|238917773|ref|YP_002931290.1| two-component system, OmpR family, response regulator ResD [Eubacterium eligens ATCC 27750] gi|238873133|gb|ACR72843.1| two-component system, OmpR family, response regulator ResD [Eubacterium eligens ATCC 27750] Length = 233 Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 35/228 (15%), Positives = 89/228 (39%), Gaps = 13/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + + E S + ++ ++ L G Sbjct: 7 ILIVDDDENIAELISLYLTKECYETKIVYDGESALSELSVFKPNLILLDLML--PGIDGY 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI---------LARV 112 ++ R IR ++ VP+I +S + + G DD + KP +E+ + Sbjct: 65 QVCREIRKNNNVPIIMLSAKGETFDKVLGLELGADDYIIKPFETKEMVARVKAVLRRYHM 124 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + + D G+ +P +E +L +L + + + Q Sbjct: 125 PQSIGVDSSNAKCVNYPDLSINLDNYSVNYMGKNVEMPPKELELLYFLASAPNQVFTREQ 184 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + I+G ++ + V+ HI ++R+K+++ + ++ +++ +GY Sbjct: 185 LLDNIWG-YEYIGDTRTVDVHIKRIREKIKDHVHWN-IETVWGIGYKF 230 >gi|148241212|ref|YP_001226369.1| two-component system response regulator [Synechococcus sp. RCC307] gi|147849522|emb|CAK27016.1| Two-component system response regulator [Synechococcus sp. RCC307] Length = 257 Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 48/232 (20%), Positives = 93/232 (40%), Gaps = 17/232 (7%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V+ G + E L +S + D+ ++ Sbjct: 15 LLVVDDEPAVRRVLSMRLQLSGYRVVCAEDGEQALELFASEQPDLVVLDVM--MPKLDGF 72 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R +RA S VP++ +S ++ + D G DD ++KP +E+ AR++ I R+ Sbjct: 73 AVCRRLRAESAVPIVFLSSLDAIAEKVAGLDLGADDYLSKPFSPKELEARISRILGRVVG 132 Query: 122 SNNRAETGPIR-------------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 ++ V ++ R GE L E +LE L G+ V Sbjct: 133 RGTASQDPREPVAGLGVLRLGDLVVDTNRRQVSRGGERISLTYTEFSLLELLFREPGRVV 192 Query: 169 AKTQIFSAIYG-LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218 + +I ++G + VV+ ++++LR KL + + + + R GY Sbjct: 193 PRAEILEQLWGYPPRRTADLRVVDVYVARLRGKLEPDPRNPELILTVRGTGY 244 >gi|42783766|ref|NP_981013.1| DNA-binding response regulator PhoP [Bacillus cereus ATCC 10987] gi|222098050|ref|YP_002532107.1| DNA-binding response regulator phop [Bacillus cereus Q1] gi|229198737|ref|ZP_04325435.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus m1293] gi|42739696|gb|AAS43621.1| DNA-binding response regulator PhoP [Bacillus cereus ATCC 10987] gi|221242108|gb|ACM14818.1| DNA-binding response regulator PhoP [Bacillus cereus Q1] gi|228584759|gb|EEK42879.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus m1293] gi|324328481|gb|ADY23741.1| DNA-binding response regulator PhoP [Bacillus thuringiensis serovar finitimus YBT-020] Length = 239 Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 40/233 (17%), Positives = 84/233 (36%), Gaps = 15/233 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + G + E ++ R D+ ++ L + Sbjct: 5 ILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERPDLIILDLML--PKMDGM 62 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILA 110 E+ + +R P++ ++ + + G DD + KP R Sbjct: 63 EVCKELRLQRVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTK 122 Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 +++ + + QG L +E +L YL N+ + + + Sbjct: 123 LQQEEQVTESSDEESITIAELKILPEFYEAYFQGRKLELTPKEFELLVYLAKNKSRVLTR 182 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 Q+ SA++ +D A + +V+ HIS LR K+ + + R LGY ++ Sbjct: 183 DQLLSAVW-NYDFAGDTRIVDVHISHLRDKIEQNTKKPTYIKTIRGLGYKLEE 234 >gi|219667712|ref|YP_002458147.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219537972|gb|ACL19711.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 232 Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 47/230 (20%), Positives = 91/230 (39%), Gaps = 11/230 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D ++ +L F + + + + D++ ++ L Sbjct: 5 ILIVDDEQAIADLVEVYLKNENYNLFKFYNGKDALDCIAKEKLDLAILDVML--PDVDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R IR P+I ++ + G DD + KP E++ARV A RR Sbjct: 63 SICRQIREKHNFPVIMLTAKEEEIDKITGLTLGADDYITKPFRPLELIARVKAQLRRFTK 122 Query: 122 SNNRAETGPIRV--------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 N+ V + + + + L E IL L +NRG+ V+ ++ Sbjct: 123 YNSSEPNQEEHVIAFSGLVLDMNTHECTLNEKKLSLTPTEFSILWVLCSNRGRVVSSEEL 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDW 222 F+ ++G N V HI LR+K+++ + + +GY I+ Sbjct: 183 FNEVWGDKYFTNSNNTVMVHIRHLREKMQDSTEHPKYIKTVWGVGYKIEK 232 >gi|256824718|ref|YP_003148678.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Kytococcus sedentarius DSM 20547] gi|256688111|gb|ACV05913.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Kytococcus sedentarius DSM 20547] Length = 239 Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 46/219 (21%), Positives = 91/219 (41%), Gaps = 5/219 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + + + +G S+ + D+ ++ L G+ + Sbjct: 17 LVVDDDSALAEMLGIVLTKEGWSVTTCGDGGRALTAFRAVNPDLVLLDVML--PGKDGMS 74 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IRA S VP+I ++ + ++G DD V KP +E+LAR A RR Sbjct: 75 VCREIRAESGVPIIMLTARTDTHDVVTGLEAGADDYVQKPFRPQELLARTRARMRRYTPP 134 Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + QGE+ PL E +L L + +++ + ++G + Sbjct: 135 QQAQLAVGDLTIDVQSHIVQRQGEIIPLTPLEFDLLVALARKPMQVLSRETLLEQVWG-Y 193 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYS 219 A + +V H+ +LR K+ + + + R +GY Sbjct: 194 QHAGDTRLVNVHVQRLRAKIESDPENPTIVQTVRGVGYR 232 >gi|295106557|emb|CBL04100.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Gordonibacter pamelaeae 7-10-1-b] Length = 231 Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 49/225 (21%), Positives = 91/225 (40%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + +G + ++ E L + D+ ++ L G Sbjct: 8 ILVVDDEPSITEFVSYALKKEGFYTDVVDNGEEALALATKNPYDLFVLDIML--PGMDGY 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116 EL R +R+ + VP++ +S + + + G DD + KP RE++AR Sbjct: 66 ELCRRLRSKTTVPVLFLSARDTELDKVVGLEIGGDDYLAKPFGVRELIARVRALLRRGSG 125 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 +N+ I + D + L RE +L LM N GK V++ + Sbjct: 126 GDFPGANHAITASGITLDEDAHTASGEHGEIDLTPREFELLASLMKNAGKVVSREDLLRD 185 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 +G ++ E V++HI +LR K+ V++ R GY Sbjct: 186 AWG-WEYLTETKTVDTHIKRLRDKIEGAGYDPGLVETVRGYGYRF 229 >gi|255525674|ref|ZP_05392607.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296185432|ref|ZP_06853842.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] gi|255510660|gb|EET86967.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296050266|gb|EFG89690.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] Length = 231 Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 41/224 (18%), Positives = 86/224 (38%), Gaps = 5/224 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 +++DD + + + G ++ ++ ++ L G V Sbjct: 6 ILIVDDEEHITELIKFNLENSGYKTICADNGLDAIKKAKRDTPNLILLDIMLPGMDGYDV 65 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118 + R + S P+I I+ + + G DD + KP RE+ + Sbjct: 66 CKEIRKDNSISSTPIIMITAKGEEFDKVLGLELGADDYITKPFSIRELLARVKAILRRTT 125 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 K + G I + + + G L +E +LE L+ NRG+ + + + ++ Sbjct: 126 AKSIDKNFGFGKININFEKHEILKDGVKLDLTLKEFEVLELLIKNRGRVMTRDFLLDKVW 185 Query: 179 GLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221 G ++ E V+ HI LR+K+ + +++ R +GY + Sbjct: 186 G-YEYIGETRTVDVHIRHLRQKIEEDDKNPKYIETIRGIGYRFN 228 >gi|2832806|emb|CAA11730.1| putative DNA binding response regulator, YvrH [Bacillus subtilis] Length = 369 Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 48/229 (20%), Positives = 91/229 (39%), Gaps = 10/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +++DD + D + +G + S E + + + D+ ++ + G Sbjct: 138 ILIVDDEKAIVDMIKRVLEKEGYRNILDAASAEEAIPVVKANKVDLIVLDVMMG--GMSG 195 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E +IR +S P+ ++ S L F G DD + KP + E+ AR+ A +R Sbjct: 196 FEACTLIREYSDAPIFFLTARSSDADKLSGFAVGADDYITKPFNPLELAARIRAHLKRTY 255 Query: 121 VSNNRAETGPIRVFSDGRDPEVQG-----EVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 S + P+ E + ++L+Y + ++K QI+ Sbjct: 256 QSKETSSNQTYTYDYFTFSPQNAELIVGGEAVACSAQLLQLLQYFCEHPNVVLSKDQIYE 315 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223 ++G + + N V HI KLR+K + + + + R LGY N Sbjct: 316 KVWG-YPSYGDNNTVMVHIRKLREKTERDPSNPEYIVTVRGLGYRFIPN 363 >gi|256833297|ref|YP_003162024.1| two component transcriptional regulator, winged helix family [Jonesia denitrificans DSM 20603] gi|256686828|gb|ACV09721.1| two component transcriptional regulator, winged helix family [Jonesia denitrificans DSM 20603] Length = 237 Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 48/233 (20%), Positives = 96/233 (41%), Gaps = 17/233 (7%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++ +G + + + D+ ++ L G Sbjct: 4 ILVVEDEESYREPLTYQLTREGYDVVAVATGTEALSAYDDEQPDLVLLDLML--PGLSGT 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 E+ R +R+ VP+I ++ + + G DD V KP RE+LAR+ A+ RR Sbjct: 62 EVCRELRSRGDVPVIMLTAKDGEIDKVVGLELGADDYVTKPYSFRELLARMRAVLRRHTS 121 Query: 121 ------------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 + GP+ + + V+G+ P +E +LEYL+ N G+ + Sbjct: 122 ASASESTDFRDDDDDQVLHAGPVAMDVERHVVTVRGDSVAFPLKEFDLLEYLLRNAGRVL 181 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220 + Q+ ++G D + ++ HI ++R K+ + + + R LGY Sbjct: 182 TRGQLIDRVWG-SDYVGDTKTLDVHIKRIRAKIEEDPGSPQLILTVRGLGYKF 233 >gi|119513415|ref|ZP_01632446.1| Two component Transcriptional regulator, Winged helix family protein [Nodularia spumigena CCY9414] gi|119461935|gb|EAW42941.1| Two component Transcriptional regulator, Winged helix family protein [Nodularia spumigena CCY9414] Length = 241 Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 40/225 (17%), Positives = 93/225 (41%), Gaps = 8/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V++ +E + L D+ ++ L Sbjct: 8 ILVVDDDPAVRNLIQRFLIKQTYQVEAAEDGKTALALFEQFNPDLVILDVNL--PDVIGF 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L + +++ + V ++ ++ + F G DD + KP E+ RV AI RR ++ Sbjct: 66 NLCQEMQSRNGVFVLMLTSRADEADKIRGFSKGADDYLTKPFGLGELEVRVGAILRRQRI 125 Query: 122 SNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + + R+ + +V PL E +L +L ++ G+ + ++ + Sbjct: 126 VTTAEQKRLVFEKLMIDPARREVALNNQVIPLTALEFDLLHFLASHPGRVWRRAELIQEV 185 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 + ++ ++ VV+ HI ++RKK+ + + + R +GY + Sbjct: 186 WD-YEYVGDQRVVDVHIGQIRKKIEIDVSQPALIQTVRGVGYKFE 229 >gi|89100385|ref|ZP_01173249.1| PhoP [Bacillus sp. NRRL B-14911] gi|89084904|gb|EAR64041.1| PhoP [Bacillus sp. NRRL B-14911] Length = 237 Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 48/232 (20%), Positives = 94/232 (40%), Gaps = 15/232 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + G + E + R D+ ++ L +E Sbjct: 6 LVVDDEQSIVTLLEYNLKQAGYEVITAMDGESGKDFALQERPDLIVLDLML--PKLNGIE 63 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + +R P++ ++ + + G DD + KP RE++ARV AI RR ++ Sbjct: 64 VCKQLRQEKIHTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTQL 123 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF----------PLPRRERRILEYLMANRGKRVAKT 171 + + E S L +E +L YL N+G+ + + Sbjct: 124 TAGQQEQAEEDSDSIRIGGLKIFPEHYEAFFSEELLELTPKEFELLLYLAQNKGRVLTRD 183 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 Q+ SA++ +D A + +V+ H+S LR+K+ + + R LGY ++ Sbjct: 184 QLLSAVW-NYDFAGDTRIVDVHVSHLREKIEENTKKPAYIKTIRGLGYKLEE 234 >gi|226323502|ref|ZP_03799020.1| hypothetical protein COPCOM_01277 [Coprococcus comes ATCC 27758] gi|225208186|gb|EEG90540.1| hypothetical protein COPCOM_01277 [Coprococcus comes ATCC 27758] Length = 233 Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 43/230 (18%), Positives = 94/230 (40%), Gaps = 13/230 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + + E S + ++ ++ L G Sbjct: 7 ILIVDDDENIAELISLYLTKECFDTMIVHDGEEALTAFESYQPNLMLLDLML--PGIDGY 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R IR+ P+I +S + + + G DD V KP +E++ARV A+ RR + Sbjct: 65 QVCREIRSKHNTPIIMLSAKGEVFDKVLGLELGADDYVLKPFDSKELVARVKAVLRRYQP 124 Query: 122 SNNRAE---------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + I + V G+ +P +E +L +L ++ + + Q Sbjct: 125 AKPETPAASRGKVVDYPGIEINLTNYAVTVDGKNVDMPPKELELLYFLASSPNQVFTREQ 184 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + I+G ++ + V+ HI +LR+K+++ + + +GY + Sbjct: 185 LLDQIWG-YEYVGDTRTVDVHIKRLREKIKDHPSWGL-STVWGIGYKFEV 232 >gi|153940678|ref|YP_001390399.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|152936574|gb|ABS42072.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|295318486|gb|ADF98863.1| DNA-binding response regulator [Clostridium botulinum F str. 230613] Length = 233 Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 45/226 (19%), Positives = 84/226 (37%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D A + + E L + ++ L Sbjct: 7 ILVVDDEERILDVVKAYLEKEDYEVITAMDGEEAIKLFKETSFHLIILDLML--PKLSGE 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ IR S VP+I ++ + L+ G DD + KP RE++ARV A+ RR Sbjct: 65 EVCSKIRESSNVPIIMLTAKVEEEDKLEGLSIGADDYLTKPFSVRELVARVKALIRRAYR 124 Query: 122 SNNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 I G+ L E ++L L+ N G+ + Q+ Sbjct: 125 GKYPLAEHLILNDGDLEVDIRKMKVLKNGKAVTLTPYEFKVLVSLLTNPGQVFTREQLVE 184 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 +G +D V+++I +R+K+ + + + + +GY Sbjct: 185 QAFG-YDYESFNRTVDTYIKNIRQKIEDNPKAPNYITTVYGVGYRF 229 >gi|168206757|ref|ZP_02632762.1| DNA-binding response regulator [Clostridium perfringens E str. JGS1987] gi|168211944|ref|ZP_02637569.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC 3626] gi|182625729|ref|ZP_02953497.1| DNA-binding response regulator [Clostridium perfringens D str. JGS1721] gi|170661839|gb|EDT14522.1| DNA-binding response regulator [Clostridium perfringens E str. JGS1987] gi|170710113|gb|EDT22295.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC 3626] gi|177908991|gb|EDT71473.1| DNA-binding response regulator [Clostridium perfringens D str. JGS1721] Length = 231 Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 49/227 (21%), Positives = 95/227 (41%), Gaps = 9/227 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD +++ +G E + + + D+ ++ L LE Sbjct: 7 LIVDDEEHIRELIKFNLKKEGYDTEVAVNGTEALKIIREIKFDLILLDLML--PEIDGLE 64 Query: 63 LPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYR 117 + + IR S +P++ I+ + + G DD + KP RE++ARV A Sbjct: 65 VCKEIRRNEETSDIPVMMITAKGEEFDKVLGLELGADDYITKPFSIRELMARVKALLRRS 124 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 +K N + G + V R+ + L +E +L+ L+ N+G + + + I Sbjct: 125 NVKKEENIIKFGDVVVNFKTREVTKGTQNVELTLKEFELLKLLIKNKGNILTRELLLDKI 184 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223 +G ++ E V+ HI LRKK+ + + + R +GY N Sbjct: 185 WG-YEYIGETRTVDVHIRHLRKKIESDDKNPQYIQTIRGVGYKFTSN 230 >gi|255523352|ref|ZP_05390322.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296188286|ref|ZP_06856678.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] gi|255513006|gb|EET89276.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296047412|gb|EFG86854.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] Length = 225 Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 52/222 (23%), Positives = 95/222 (42%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD L++ +G + SS + D+ + ++ Sbjct: 6 ILVVDDEPLIRKLVTDFLKREGYITLEAEDGRKALDVFSSEK-DIDLVILDVMLPEYDGW 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120 + R IR S P+I ++ L FD G D+ + KP ++ARV A+ R + Sbjct: 65 TVCREIRKKSSTPIIMLTARGEEFDELFGFDIGADEYIAKPFSPNILVARVNAVLRRAVP 124 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 V + E + + + + + L +E +L YL N GK V++ QI ++G Sbjct: 125 VDSKTKEFNGLIIDENAHEVNIDDCTIDLSPKEYDLLMYLTENYGKAVSREQILDKVWG- 183 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D + V++HI++LR KL +K V + R GY + Sbjct: 184 YDYYGDLRTVDTHINRLRIKLDSKSN--YVQTVRGYGYRFEV 223 >gi|227545794|ref|ZP_03975843.1| response regulator [Bifidobacterium longum subsp. infantis ATCC 55813] gi|227213910|gb|EEI81749.1| response regulator [Bifidobacterium longum subsp. infantis ATCC 55813] Length = 256 Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 56/230 (24%), Positives = 101/230 (43%), Gaps = 13/230 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++ + +G + + E L + D+ ++ L G Sbjct: 26 ILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGGIDLVLLDLML--PGIDGT 83 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 L R IR S+VP+I ++ + + + G DD V KP RE+LAR+ A+ RR + Sbjct: 84 ALCRRIREQSRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVMRRNQA 143 Query: 121 --------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + G I + V+GE P +E +LEYLM N+G+ + + Q Sbjct: 144 TAQASGTVDDDIPLVCGDIAMQVGQHQVTVRGEAVFFPLKEFELLEYLMQNKGRVMTRHQ 203 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221 + I+G D + ++ H+ ++R K+ + + R LGY ID Sbjct: 204 LIDRIWG-SDYVGDTKTLDVHVKRVRSKIEEDPAHPKYLTTVRGLGYKID 252 >gi|182680204|ref|YP_001834350.1| two component transcriptional regulator [Beijerinckia indica subsp. indica ATCC 9039] gi|182636087|gb|ACB96861.1| two component transcriptional regulator, winged helix family [Beijerinckia indica subsp. indica ATCC 9039] Length = 230 Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 47/223 (21%), Positives = 85/223 (38%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ G+ + + ++ D+ ++ L Sbjct: 5 ILVVDDDPHIREVICFALEKAGMRVVVAEDGSQVLTIMAAQTPDLIVLDIG--MPEMDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E R IR S+VP++ +S + + G DD V KP RE++ARV I +RL+ Sbjct: 63 ETCRRIRKTSEVPILFLSARDEEIDRVLGLEIGGDDYVTKPFSPRELVARVNVILKRLRP 122 Query: 122 SNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 G G L E ILE A + + QI ++ Sbjct: 123 KEAEPSNGLTHGELSLDLASHRATFHGSALSLTALEFSILECFTARPNQVFTREQILASA 182 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 Y V + ++SHI +R KL G +++ +G+ + Sbjct: 183 YNNA-INVSDRTIDSHIRNIRAKLALAGGGGCIETVHGIGFRL 224 >gi|255524384|ref|ZP_05391341.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296187507|ref|ZP_06855902.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] gi|255511941|gb|EET88224.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296048029|gb|EFG87468.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] Length = 226 Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 43/222 (19%), Positives = 94/222 (42%), Gaps = 7/222 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ A +G ++ + + + ++ ++ Sbjct: 5 ILIVDDEERMRFLIDAYLKKEGFNVLQAENGKDALKIFKENTVELVVLDIM--MPVMDGW 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119 + IR SQVP+I ++ + + F+ G D+ V KP + ++A+V A Sbjct: 63 TTCKEIRKISQVPVIMLTAKAEDEDQILGFELGTDNYVTKPFSPKLLVAKVKALLKRAYP 122 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +N + + + ++ E L +E +L Y N+G +++ QI +++G Sbjct: 123 DENNQDNFFDGLYINEKAHETKINDEDIYLSPKEFELLSYFAKNKGMVLSREQILDSVWG 182 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + D + V++HI +LR+KL K + + R GY + Sbjct: 183 I-DYYGDLRTVDTHIKRLREKLGEKAY--LISTVRGTGYKFE 221 >gi|228994185|ref|ZP_04154085.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus pseudomycoides DSM 12442] gi|229000254|ref|ZP_04159823.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus mycoides Rock3-17] gi|229007777|ref|ZP_04165365.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus mycoides Rock1-4] gi|229087951|ref|ZP_04220061.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock3-44] gi|228695364|gb|EEL48239.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock3-44] gi|228753485|gb|EEM02935.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus mycoides Rock1-4] gi|228759586|gb|EEM08563.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus mycoides Rock3-17] gi|228765637|gb|EEM14291.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus pseudomycoides DSM 12442] Length = 247 Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 52/227 (22%), Positives = 100/227 (44%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + + + + + D+ ++ L G+ L Sbjct: 18 ILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIML--PGKDGL 75 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR S++P+I ++ S + + G DD V KP RE+LARV A RR + Sbjct: 76 EVCREIRKSSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQ 135 Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N GPI + + + E L RE +L YL + G+ + + + Sbjct: 136 GGSAEKEENTEMVIGPIVINPNAYSVTKREESIELTHREFELLHYLAKHLGQVMTREHLL 195 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++G +D + V+ + +LR+K+ + + ++R +GY + Sbjct: 196 QTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPTLIVTRRGVGYYL 241 >gi|312127464|ref|YP_003992338.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor hydrothermalis 108] gi|311777483|gb|ADQ06969.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor hydrothermalis 108] Length = 232 Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 40/229 (17%), Positives = 93/229 (40%), Gaps = 11/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + +G + +S + + D+ ++ + Sbjct: 4 ILIVDDEQHILELLKFNLRKEGYNTFEADSGLQALEILKHNKVDLVILDIM--MSDKDGY 61 Query: 62 ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AA 114 E+ + IR + P+I +S + + G DD + KP +E++ RV Sbjct: 62 EVLKEIRFNKDTKNLPVILLSAKSEEIDKILGLELGADDYITKPFSVKELVVRVKALLRR 121 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + ++ + G + V R + + L +E +L+ L+ N+G+ + + I Sbjct: 122 VESLKPEVEDKVKFGDVEVDFSKRTVKKNNQDVSLSFKEFELLKLLIENKGRVLDRDFIL 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222 ++G ++ + V+ HI LR+KL + +++ R +GY + Sbjct: 182 QRVWG-YEFDGDTRTVDVHIRFLRRKLEDDEKNPRYIETVRGVGYRFNE 229 >gi|304317062|ref|YP_003852207.1| transcriptional regulator [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778564|gb|ADL69123.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 229 Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 44/229 (19%), Positives = 87/229 (37%), Gaps = 10/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 + IDD + D A +G S+ + S + D+ ++ L G Sbjct: 3 ILAIDDEEKILDVIKAYLEREGYSVFTETNGANAINTFKSLKPDLVILDLML--PGLSGE 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116 E+ IRA S+VP++ ++ + F G DD + KP RE+ R Sbjct: 61 EICSKIRAISKVPILMLTAKVEEDDKVYGFSIGADDYLTKPFSPRELTMRVKAILRRTKD 120 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 G + + + + + GE+ L E ++L + N + + ++ Sbjct: 121 DMALNDIFSFNDGDLVIDTRSYEVKKSGEIVNLTPNEYKLLTVMAQNPNRVFTRGELIEK 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI-DWN 223 + G +D + +++HI LR+K+ + + + GY + N Sbjct: 181 VMG-YDFEGFDRTIDAHIKNLRQKIEDDPKNPVYIKTVYGAGYKFGEEN 228 >gi|30264659|ref|NP_847036.1| DNA-binding response regulator PhoP [Bacillus anthracis str. Ames] gi|47530129|ref|YP_021478.1| DNA-binding response regulator PhoP [Bacillus anthracis str. 'Ames Ancestor'] gi|47564999|ref|ZP_00236042.1| alkaline phosphatase synthesis two-component response regulator phoP [Bacillus cereus G9241] gi|49187479|ref|YP_030731.1| DNA-binding response regulator PhoP [Bacillus anthracis str. Sterne] gi|49481343|ref|YP_038634.1| alkaline phosphatase synthesis response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52140920|ref|YP_085909.1| alkaline phosphatase synthesis response regulator [Bacillus cereus E33L] gi|65321956|ref|ZP_00394915.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bacillus anthracis str. A2012] gi|118479736|ref|YP_896887.1| alkaline phosphatase synthesis response regulator [Bacillus thuringiensis str. Al Hakam] gi|165869762|ref|ZP_02214420.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0488] gi|167633879|ref|ZP_02392202.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0442] gi|167638246|ref|ZP_02396524.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0193] gi|170685683|ref|ZP_02876906.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0465] gi|170705363|ref|ZP_02895827.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0389] gi|177651214|ref|ZP_02934045.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0174] gi|190569075|ref|ZP_03021975.1| DNA-binding response regulator PhoP [Bacillus anthracis Tsiankovskii-I] gi|196032842|ref|ZP_03100255.1| DNA-binding response regulator PhoP [Bacillus cereus W] gi|196040861|ref|ZP_03108159.1| DNA-binding response regulator PhoP [Bacillus cereus NVH0597-99] gi|196047480|ref|ZP_03114691.1| DNA-binding response regulator PhoP [Bacillus cereus 03BB108] gi|206977153|ref|ZP_03238052.1| DNA-binding response regulator PhoP [Bacillus cereus H3081.97] gi|217962068|ref|YP_002340638.1| DNA-binding response regulator PhoP [Bacillus cereus AH187] gi|218905816|ref|YP_002453650.1| DNA-binding response regulator PhoP [Bacillus cereus AH820] gi|225866566|ref|YP_002751944.1| DNA-binding response regulator PhoP [Bacillus cereus 03BB102] gi|227817373|ref|YP_002817382.1| DNA-binding response regulator PhoP [Bacillus anthracis str. CDC 684] gi|228917227|ref|ZP_04080784.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228929636|ref|ZP_04092654.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228935896|ref|ZP_04098706.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228948313|ref|ZP_04110596.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228987836|ref|ZP_04147945.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229093685|ref|ZP_04224784.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock3-42] gi|229124155|ref|ZP_04253347.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus 95/8201] gi|229141314|ref|ZP_04269852.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BDRD-ST26] gi|229158191|ref|ZP_04286258.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus ATCC 4342] gi|229186844|ref|ZP_04313999.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BGSC 6E1] gi|229604309|ref|YP_002868868.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0248] gi|254687396|ref|ZP_05151252.1| DNA-binding response regulator PhoP [Bacillus anthracis str. CNEVA-9066] gi|254724959|ref|ZP_05186742.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A1055] gi|254736696|ref|ZP_05194402.1| DNA-binding response regulator PhoP [Bacillus anthracis str. Western North America USA6153] gi|254741733|ref|ZP_05199420.1| DNA-binding response regulator PhoP [Bacillus anthracis str. Kruger B] gi|254754669|ref|ZP_05206704.1| DNA-binding response regulator PhoP [Bacillus anthracis str. Vollum] gi|254757501|ref|ZP_05209528.1| DNA-binding response regulator PhoP [Bacillus anthracis str. Australia 94] gi|301056094|ref|YP_003794305.1| alkaline phosphatase synthesis response regulator [Bacillus anthracis CI] gi|30259334|gb|AAP28522.1| DNA-binding response regulator PhoP [Bacillus anthracis str. Ames] gi|47505277|gb|AAT33953.1| DNA-binding response regulator PhoP [Bacillus anthracis str. 'Ames Ancestor'] gi|47557785|gb|EAL16110.1| alkaline phosphatase synthesis two-component response regulator phoP [Bacillus cereus G9241] gi|49181406|gb|AAT56782.1| DNA-binding response regulator PhoP [Bacillus anthracis str. Sterne] gi|49332899|gb|AAT63545.1| alkaline phosphatase synthesis response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51974389|gb|AAU15939.1| alkaline phosphatase synthesis response regulator [Bacillus cereus E33L] gi|118418961|gb|ABK87380.1| alkaline phosphatase synthesis response regulator [Bacillus thuringiensis str. Al Hakam] gi|164714591|gb|EDR20110.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0488] gi|167514063|gb|EDR89431.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0193] gi|167530680|gb|EDR93382.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0442] gi|170129488|gb|EDS98351.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0389] gi|170670147|gb|EDT20887.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0465] gi|172083040|gb|EDT68102.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0174] gi|190559857|gb|EDV13842.1| DNA-binding response regulator PhoP [Bacillus anthracis Tsiankovskii-I] gi|195994271|gb|EDX58226.1| DNA-binding response regulator PhoP [Bacillus cereus W] gi|196021695|gb|EDX60391.1| DNA-binding response regulator PhoP [Bacillus cereus 03BB108] gi|196028315|gb|EDX66924.1| DNA-binding response regulator PhoP [Bacillus cereus NVH0597-99] gi|206744638|gb|EDZ56046.1| DNA-binding response regulator PhoP [Bacillus cereus H3081.97] gi|217063985|gb|ACJ78235.1| DNA-binding response regulator PhoP [Bacillus cereus AH187] gi|218539540|gb|ACK91938.1| DNA-binding response regulator PhoP [Bacillus cereus AH820] gi|225790365|gb|ACO30582.1| DNA-binding response regulator PhoP [Bacillus cereus 03BB102] gi|227003433|gb|ACP13176.1| DNA-binding response regulator PhoP [Bacillus anthracis str. CDC 684] gi|228596581|gb|EEK54246.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BGSC 6E1] gi|228625149|gb|EEK81909.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus ATCC 4342] gi|228642095|gb|EEK98388.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BDRD-ST26] gi|228659457|gb|EEL15105.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus 95/8201] gi|228689570|gb|EEL43378.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock3-42] gi|228771884|gb|EEM20341.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228811300|gb|EEM57638.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228823664|gb|EEM69486.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228830023|gb|EEM75642.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228842428|gb|EEM87519.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229268717|gb|ACQ50354.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0248] gi|300378263|gb|ADK07167.1| alkaline phosphatase synthesis response regulator [Bacillus cereus biovar anthracis str. CI] Length = 239 Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 40/233 (17%), Positives = 84/233 (36%), Gaps = 15/233 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + G + E ++ R D+ ++ L + Sbjct: 5 ILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERPDLIILDLML--PKMDGM 62 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILA 110 E+ + +R P++ ++ + + G DD + KP R Sbjct: 63 EVCKELRLQRVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTK 122 Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 +++ + + QG L +E +L YL N+ + + + Sbjct: 123 LQQEEQVTETSDEESITIAELKILPEFYEAYFQGRKLELTPKEFELLVYLAKNKSRVLTR 182 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 Q+ SA++ +D A + +V+ HIS LR K+ + + R LGY ++ Sbjct: 183 DQLLSAVW-NYDFAGDTRIVDVHISHLRDKIEQNTKKPTYIKTIRGLGYKLEE 234 >gi|84498453|ref|ZP_00997223.1| response regulator receiver [Janibacter sp. HTCC2649] gi|84381196|gb|EAP97080.1| response regulator receiver [Janibacter sp. HTCC2649] Length = 226 Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 49/225 (21%), Positives = 94/225 (41%), Gaps = 8/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D D L +G + + S D+ ++ L G + Sbjct: 4 ILVVEDEVSFSDPLSYLLRKEGYEVSVAENGNDALTEFDSGGADLVLLDLML--PGLSGV 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117 ++ R +R S VP+I ++ S + + G DD V KP R I A + + Sbjct: 62 DVCRALRQRSNVPVIMLTAKDSEIDKVVGLELGADDYVTKPYSSRELLARIKAVLRRLSE 121 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 ++ E GP+R+ + V G LP +E +LE L+ N G+ + + Q+ + Sbjct: 122 PEELLPTTLEAGPVRMDVERHVVTVGGAATQLPLKEFELLEMLLRNTGRVLTRMQLIDRV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 +G D + ++ H+ +LR K+ + + + R LGY + Sbjct: 182 WG-SDYVGDTKTLDVHVKRLRAKVEPDPAAPKHIVTVRGLGYKFE 225 >gi|258516072|ref|YP_003192294.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] gi|257779777|gb|ACV63671.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] Length = 225 Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 52/222 (23%), Positives = 95/222 (42%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD + DG S+ ++ + + + D+ ++ Sbjct: 7 ILIADDEPRMLKLVSDFLKKDGHSVFVADNGRQALDIFNEQQLDLVILDVM--MPEYDGW 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120 + R IR S VP+I ++ L F+ G D+ V KP + ++ARV A + R + Sbjct: 65 AVCREIRKTSHVPIIMLTARAEESDELFGFELGADEYVTKPFSPKILVARVQALLRRIAE 124 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 N + + GR V G L +E +L YL+ N+G+ + + QI +A++ Sbjct: 125 HKNQMISIEGLEIDESGRCVTVDGVPLDLSMKEFELLNYLVNNQGRALNRDQILNAVWD- 183 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 ++ + V++HI LR KL K + + R LGY + Sbjct: 184 YNYFGDARTVDTHIKNLRHKLGAKGL--FIKTIRGLGYKFEV 223 >gi|330685981|gb|EGG97604.1| transcriptional regulatory protein ResD [Staphylococcus epidermidis VCU121] Length = 241 Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 37/233 (15%), Positives = 82/233 (35%), Gaps = 14/233 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ + + + L ++ L + Sbjct: 5 ILIVDDEDRIRRLLKLYLERESFETHEASDGKEAYQLAMENDYACILLDLML--PEMDGI 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112 E+ +R H P+I ++ ++ F+SG DD + KP RE + Sbjct: 63 EVATQLREHKDTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQS 122 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + + E + + +D E L +E +L YL K + Q Sbjct: 123 TTPEQSEPHARDVIEFNHLVIDNDAHRVLADNEQVNLTPKEYELLIYLAKTPNKVFDREQ 182 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN--KLGFDPVDSKRFLGYSIDWN 223 + ++ ++ + V++H+ +LR+KL + + +GY + N Sbjct: 183 LLKEVW-HYEFYGDLRTVDTHVKRLREKLNKVSSDAAHMIQTVWGVGYKFEVN 234 >gi|229175297|ref|ZP_04302812.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus MM3] gi|228608129|gb|EEK65436.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus MM3] Length = 239 Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 49/233 (21%), Positives = 94/233 (40%), Gaps = 15/233 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + G + E ++ R D+ ++ L + Sbjct: 5 ILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERPDLIILDLML--PKMDGM 62 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ + +R P++ ++ + + G DD + KP RE++ARV AI RR K Sbjct: 63 EVCKELRLQRVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTK 122 Query: 121 VSNNRAETGPIR----------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + + + + QG L +E +L YL N+ + + + Sbjct: 123 LQQEEQVKEASDEESITLAELKILPEFYEAYFQGRKLELTPKEFELLVYLAKNKSRVLTR 182 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 Q+ SA++ +D A + +V+ HIS LR K+ + + R LGY ++ Sbjct: 183 DQLLSAVW-NYDFAGDTRIVDVHISHLRDKIEQNTKKPTYIKTIRGLGYKLEE 234 >gi|210612997|ref|ZP_03289562.1| hypothetical protein CLONEX_01764 [Clostridium nexile DSM 1787] gi|210151360|gb|EEA82368.1| hypothetical protein CLONEX_01764 [Clostridium nexile DSM 1787] Length = 223 Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 54/225 (24%), Positives = 98/225 (43%), Gaps = 11/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++D + G + + L SSA D+ ++ L Sbjct: 4 ILIVEDDLDIQDLLRNFLQEVGYEITIASDGMEAIALFSSAHFDLILLDIML--PKIDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + +IR SQVP+I ++ + + D VDD + KP ++ ++ A+ RR + Sbjct: 62 TVCELIRKQSQVPIIMLTALNGEEEQIRGLDLQVDDYITKPFSMPILVRKIGAVLRRSSM 121 Query: 122 SNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + D V G F L +RE +L L+ N+G+ + + + + Sbjct: 122 IPEQEHQTITYKNLVLDMDSYTAVVDGVSFDLTQREFEVLRELLLNQGRVLTRQNLLDKL 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + +D +E VV++HI LRKKL G D + + R +GY ID Sbjct: 182 W-KYDFYGDERVVDTHIKNLRKKL----GIDFIQTIRGVGYKIDK 221 >gi|168214874|ref|ZP_02640499.1| DNA-binding response regulator [Clostridium perfringens CPE str. F4969] gi|170713701|gb|EDT25883.1| DNA-binding response regulator [Clostridium perfringens CPE str. F4969] Length = 231 Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 49/227 (21%), Positives = 95/227 (41%), Gaps = 9/227 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD +++ +G E + + + D+ ++ L LE Sbjct: 7 LIVDDEEHIRELIKFNLKKEGYDTEVAVNGTEALKIIREIKFDLILLDLML--PEIDGLE 64 Query: 63 LPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYR 117 + + IR S +P++ I+ + + G DD + KP RE++ARV A Sbjct: 65 VCKEIRRNEETSDIPVMMITAKGEEFDKVLGLELGADDYITKPFSIRELMARVKALLRRS 124 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 +K N + G + V R+ + L +E +L+ L+ N+G + + + I Sbjct: 125 NVKKEENIIKFGDVVVNFKTREVAKGTQNVELTLKEFELLKLLIKNKGNILTRELLLDKI 184 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223 +G ++ E V+ HI LRKK+ + + + R +GY N Sbjct: 185 WG-YEYIGETRTVDVHIRHLRKKIESDDKNPQYIQTIRGVGYKFTSN 230 >gi|218895392|ref|YP_002443803.1| DNA-binding response regulator [Bacillus cereus G9842] gi|218543363|gb|ACK95757.1| DNA-binding response regulator [Bacillus cereus G9842] Length = 237 Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 42/228 (18%), Positives = 88/228 (38%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L DD +++ + ++ + E L + ++ ++ + Sbjct: 6 ILLADDDKEIRNLLKIYLERELYMVDTAINGEEALHLFNQNNYNLVILDLM--MPKIDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 E+ + +R + VP++ ++ + G DD + KP E++ARV A+ RR Sbjct: 64 EVCKKLRYKTNVPILMLTAKDHEIDKILGLSIGADDYITKPFSIHEVIARVKALMRRFLV 123 Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + E L +E +L++ +N G+ KTQ+ Sbjct: 124 LGSSNTAQEKTTLSFKGLTFNLNTYTVHTNKEEINLTGKELELLKFFTSNPGQVFTKTQL 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 F ++ + ++N V HI KLRKK+ + + + +GY Sbjct: 184 FQNVWD-DNYIEDDNTVMVHIRKLRKKIEIDPSNPKFIQTIWGIGYKF 230 >gi|23464917|ref|NP_695520.1| response regulator of two-component system [Bifidobacterium longum NCC2705] gi|23325510|gb|AAN24156.1| response regulator of two-component system [Bifidobacterium longum NCC2705] Length = 256 Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 56/230 (24%), Positives = 101/230 (43%), Gaps = 13/230 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++ + +G + + E L + D+ ++ L G Sbjct: 26 ILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGGIDLVLLDLML--PGIDGT 83 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 L R IR S+VP+I ++ + + + G DD V KP RE+LAR+ A+ RR + Sbjct: 84 ALCRRIREQSRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVMRRNQA 143 Query: 121 --------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + G I + V+GE P +E +LEYLM N+G+ + + Q Sbjct: 144 TAQASGTVDDDIPLVCGDIVMQVGQHQVTVRGETVFFPLKEFELLEYLMQNKGRVMTRHQ 203 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221 + I+G D + ++ H+ ++R K+ + + R LGY ID Sbjct: 204 LIDRIWG-SDYVGDTKTLDVHVKRVRSKIEEDPAHPKYLTTVRGLGYKID 252 >gi|150389321|ref|YP_001319370.1| two component transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149949183|gb|ABR47711.1| two component transcriptional regulator, winged helix family [Alkaliphilus metalliredigens QYMF] Length = 224 Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 45/222 (20%), Positives = 95/222 (42%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ L ++G + + + D+ ++ Sbjct: 4 ILIVDDDPHIRELVKVLLRNEGFDVHEAFDGVEALSKLETIKVDMVILDVM--MPNMDGW 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120 +L R +R H +PL+ ++ + F G DD + KP E++ RV A + R Sbjct: 62 QLCRELREHYDLPLLMLTAKGETSQKVKGFQLGTDDYLVKPFEPMELVVRVKALLKRYQI 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 +++ G + + V E F LP +E +L + + K ++ Q+ I+G Sbjct: 122 ITSQTVRIGELVMNQKNYKVTVGSESFTLPLKEFELLFKMASYPEKTFSREQLIEDIWG- 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D A E ++ HI++LR++ + + + R LGY ++ Sbjct: 181 YDFAGNERTLDVHINRLRQRFPEENHSFKIRTIRGLGYRLEV 222 >gi|312193413|ref|YP_003991079.1| transcriptional regulator [Geobacillus sp. Y4.1MC1] gi|311217865|gb|ADP76468.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y4.1MC1] Length = 237 Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 44/227 (19%), Positives = 93/227 (40%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +++DD + + +F +G + + + L + D+ ++ ++ Sbjct: 6 ILIVDDEEAILNMLKLVFNKEGFTSVHTCTNGTDALHLLEQKKFDLIILD--IMLPDLSG 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH------REILARVAA 114 LE+ R IR PL IS S L F G DD + KP + + + Sbjct: 64 LEMCRAIRKGCDAPLFFISAKSSDLDKLTGFAHGCDDYITKPFNPLEVVARVKAQLQRYL 123 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + + G ++ + V+G+ P + R+L + + + K Q++ Sbjct: 124 SKENKEKQSEILDFGRFQLNLAAAELIVEGKPVPCSAQVYRLLAFFCKHPNQVFTKEQLY 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++G D+ V++N V HI K+R+K+ + + + R +GY + Sbjct: 184 YQVWGE-DQLVDDNTVMVHIRKIREKIEKDPSKPQYLKTIRGIGYKL 229 >gi|47231509|gb|AAT12781.1| PhoB [Alcaligenes faecalis] Length = 236 Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 46/222 (20%), Positives = 95/222 (42%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++++D +++ G + E + L + D+ ++ L G G + Sbjct: 5 ILVVEDEPAIQELISVNLSFAGHKVLRAFDAEQAQILIRAELPDLILVDWMLPGSSGINL 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118 R +P+I ++ S Q +D ++G DD + KP +E++AR+ A R Sbjct: 65 ARKLRSDERTRHIPVIMLTAKGSEQDKVDGLEAGADDYITKPFSPKELIARIKAVLRRRA 124 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 +++++ G +++ QG + E R+L + M + + ++Q+ ++ Sbjct: 125 PQLTDDVISIGNLQLDPSTHRLSSQGMALTIGPTEFRLLHFFMTHTERVFTRSQLLDQVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G VEE V+ HI +LRK L +++ R GY Sbjct: 185 GDH-VFVEERTVDVHIRRLRKALEPSGHDKHIETIRGSGYRF 225 >gi|297565507|ref|YP_003684479.1| winged helix family two component transcriptional regulator [Meiothermus silvanus DSM 9946] gi|296849956|gb|ADH62971.1| two component transcriptional regulator, winged helix family [Meiothermus silvanus DSM 9946] Length = 222 Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 54/223 (24%), Positives = 92/223 (41%), Gaps = 7/223 (3%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 M ++++D + + DG E + L +A+ D+ ++ L Sbjct: 1 MVLVVEDEPEIAEILEGYLRRDGYRTERAADGKAALGLYRAAKPDLVLLDIQL--PELDG 58 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117 LE+ R IRA P+I ++ L + G DD V KP RE++ARV Sbjct: 59 LEVLRRIRADGNTPVILVTARSEDLDKLLGLELGADDYVTKPFSPREVVARVKAVLRRAN 118 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 L+ + GP+ + ++ V L E R+LE L G+ + ++ A Sbjct: 119 PLESAATVLRAGPLEIDTEWVMARVGASRLELTPTEFRLLETLARTPGRAFTRQELLEAA 178 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 L D E V++ H+ LRKKL +++ R +GY + Sbjct: 179 --LPDSDALERVIDVHLKNLRKKLEAAGATGLLETVRGVGYRL 219 >gi|332981325|ref|YP_004462766.1| winged helix family two component transcriptional regulator [Mahella australiensis 50-1 BON] gi|332699003|gb|AEE95944.1| two component transcriptional regulator, winged helix family [Mahella australiensis 50-1 BON] Length = 235 Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 45/224 (20%), Positives = 94/224 (41%), Gaps = 6/224 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +++DD A + + + G +E E D+ ++ L G G +V Sbjct: 6 ILVVDDEAHILELIRFNLENAGYKVEVAEDGETALKFCRQQVPDLIILDIMLPGIDGLEV 65 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117 + R A ++VP+I ++ + + G DD + KP RE++ARV Sbjct: 66 CKTLRASVATAKVPIIMLTAKGEEIDKVVGLEIGADDYIAKPFGIRELIARVKALLRRTE 125 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + G + + + + G +E +L+ L+ N+GK +++ + + Sbjct: 126 NNDMEPKIIKVGGLTIDTSKYEVYKNGNKLDFTLKEFELLKLLVLNQGKVLSRDYLLDQV 185 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220 +G ++ E V+ HI +R+KL + +++ R +GY Sbjct: 186 WG-YEYFGETRTVDVHIRHIRQKLGDDMDEAKYIETIRGVGYKF 228 >gi|206972723|ref|ZP_03233660.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|228950826|ref|ZP_04112951.1| hypothetical protein bthur0006_2590 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229068029|ref|ZP_04201338.1| hypothetical protein bcere0025_2460 [Bacillus cereus F65185] gi|229077630|ref|ZP_04210261.1| hypothetical protein bcere0023_3340 [Bacillus cereus Rock4-2] gi|229176865|ref|ZP_04304262.1| hypothetical protein bcere0005_2460 [Bacillus cereus 172560W] gi|206732356|gb|EDZ49541.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|228606613|gb|EEK64037.1| hypothetical protein bcere0005_2460 [Bacillus cereus 172560W] gi|228705684|gb|EEL58039.1| hypothetical protein bcere0023_3340 [Bacillus cereus Rock4-2] gi|228715096|gb|EEL66962.1| hypothetical protein bcere0025_2460 [Bacillus cereus F65185] gi|228808856|gb|EEM55350.1| hypothetical protein bthur0006_2590 [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 237 Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 42/228 (18%), Positives = 91/228 (39%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD +++ + ++ + E L + + ++ ++ + Sbjct: 6 ILIADDDKEIRNLLKIYLERELYMVDTAINGEEALHLFNQNKYNLVILDLM--MPKIDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + +R + VP++ ++ + G DD + KP E++ARV A+ RR V Sbjct: 64 EVCKKLRDKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVIARVKALMRRFLV 123 Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + + E L +E +L++ +N G+ KTQ+ Sbjct: 124 LGSNNTAQEKTTLSFKGLTINLNTYTVHTNKEEISLTGKELELLKFFTSNPGQVFTKTQL 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 F ++ + ++N V HI KLRKK+ + + + +GY Sbjct: 184 FRNVWD-DNYIEDDNTVMVHIRKLRKKIEIDPSNPKFIQTIWGIGYKF 230 >gi|163942322|ref|YP_001647206.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|229062273|ref|ZP_04199594.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH603] gi|229135424|ref|ZP_04264211.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BDRD-ST196] gi|229169315|ref|ZP_04297025.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH621] gi|163864519|gb|ABY45578.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] gi|228614078|gb|EEK71193.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH621] gi|228647985|gb|EEL04033.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus BDRD-ST196] gi|228717001|gb|EEL68682.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH603] Length = 239 Score = 155 bits (393), Expect = 3e-36, Method: Composition-based stats. Identities = 40/233 (17%), Positives = 85/233 (36%), Gaps = 15/233 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + G + E ++ R D+ ++ L + Sbjct: 5 ILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERPDLIILDLML--PKMDGM 62 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILA 110 E+ + +R P++ ++ + + G DD + KP R Sbjct: 63 EVCKELRLQRIMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTK 122 Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + +++ + + QG L +E +L YL N+ + + + Sbjct: 123 LQQEEQVSESPDEESIKIAELKILPEFYEAYFQGRKLELTPKEFELLVYLAKNKSRVLTR 182 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 Q+ SA++ +D A + +V+ HIS LR K+ + + R LGY ++ Sbjct: 183 DQLLSAVW-NYDFAGDTRIVDVHISHLRDKIEQNTKKPTYIKTIRGLGYKLEE 234 >gi|302871716|ref|YP_003840352.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor obsidiansis OB47] gi|302574575|gb|ADL42366.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor obsidiansis OB47] Length = 232 Score = 155 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 40/229 (17%), Positives = 94/229 (41%), Gaps = 11/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + +G + +S + + + D+ ++ + Sbjct: 4 ILIVDDEQHILELLKFNLRKEGYNTFEADSGVQALEILKNNKVDLVILDIM--MSDKDGY 61 Query: 62 ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AA 114 E+ + IR + P+I +S + + G DD + KP +E++ RV Sbjct: 62 EVLKEIRFNRDTKNLPVILLSAKSEEIDKILGLELGADDYITKPFSVKELVVRVKALLRR 121 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + ++ + G + V R + + L +E +L+ L+ N+G+ + + I Sbjct: 122 VESLKPEVEDKVKFGDVEVDFSKRTVKKNNQDVSLSFKEFELLKLLIENKGRVLDRDFIL 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222 ++G ++ + V+ HI LR+KL + +++ R +GY + Sbjct: 182 QRVWG-YEFDGDTRTVDVHIRFLRRKLEDDEKNPRYIETVRGVGYRFNE 229 >gi|229013792|ref|ZP_04170920.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus mycoides DSM 2048] gi|228747461|gb|EEL97336.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus mycoides DSM 2048] Length = 239 Score = 155 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 41/233 (17%), Positives = 86/233 (36%), Gaps = 15/233 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + G + E ++ R D+ ++ L + Sbjct: 5 ILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERPDLIILDLML--PKMDGM 62 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILA 110 E+ + +R P++ ++ + + G DD + KP R Sbjct: 63 EVCKELRLQRIMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTK 122 Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + G +++ + + QG L +E +L YL N+ + + + Sbjct: 123 LQQEEQVSESPDEESIKIGELKILPEFYEAYFQGRKLELTPKEFELLVYLAKNKSRVLTR 182 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 Q+ SA++ +D A + +V+ HIS LR K+ + + R LGY ++ Sbjct: 183 DQLLSAVW-NYDFAGDTRIVDVHISHLRDKIEQNTKKPTYIKTIRGLGYKLEE 234 >gi|315647169|ref|ZP_07900282.1| two-component response regulator [Paenibacillus vortex V453] gi|315277371|gb|EFU40700.1| two-component response regulator [Paenibacillus vortex V453] Length = 231 Score = 155 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 51/228 (22%), Positives = 86/228 (37%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD A + D +G + + + D++ ++ Sbjct: 6 ILIADDEAEIADLIELHLKKEGYDVLKAADGQEAVQAAQTHSVDLAILDIM--MPKLDGY 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR +P+I +S S + G DD + KP + E++ARV A RR Sbjct: 64 EVIRQIREQHHMPIIFLSAKTSDLDKIAGLVRGADDYMTKPFNPMELIARVNAHLRRYMQ 123 Query: 122 SNNRAETGPI-------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + +G ++ D R + GE L +E IL L + K + IF Sbjct: 124 MSQPTTSGKPALEAGGVIIYPDQRIVTLYGETIELTPKEFDILHLLASYPKKVFSTENIF 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSID 221 ++G N V HI LRKKL + + +GY+ + Sbjct: 184 QHVWGEAYFE-TSNTVMVHIRTLRKKLHEDTNKNKLIKTVWGVGYTFN 230 >gi|229163581|ref|ZP_04291530.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus R309803] gi|228619831|gb|EEK76708.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus R309803] Length = 239 Score = 155 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 49/233 (21%), Positives = 93/233 (39%), Gaps = 15/233 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + G + E ++ R D+ ++ L + Sbjct: 5 ILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERPDLIILDLML--PKMDGM 62 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ + +R P++ ++ + + G DD + KP RE++ARV AI RR K Sbjct: 63 EVCKELRLQRIMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTK 122 Query: 121 VSNNRAETGPIRVF----------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + + + QG L +E +L YL N+ + + + Sbjct: 123 LQQEEQVAEAPDEDSILIAELKILPEFYEAYFQGRKLELTPKEFELLVYLAKNKSRVLTR 182 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 Q+ SA++ +D A + +V+ HIS LR K+ + + R LGY ++ Sbjct: 183 DQLLSAVW-NYDFAGDTRIVDVHISHLRDKIEKNTKKPTYIKTIRGLGYKLEE 234 >gi|257792595|ref|YP_003183201.1| two component transcriptional regulator, winged helix family [Eggerthella lenta DSM 2243] gi|317488883|ref|ZP_07947413.1| response regulator receiver domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|325832718|ref|ZP_08165481.1| sensory transduction protein RegX3 [Eggerthella sp. HGA1] gi|257476492|gb|ACV56812.1| two component transcriptional regulator, winged helix family [Eggerthella lenta DSM 2243] gi|316911957|gb|EFV33536.1| response regulator receiver domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|325485857|gb|EGC88318.1| sensory transduction protein RegX3 [Eggerthella sp. HGA1] Length = 231 Score = 155 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 49/225 (21%), Positives = 91/225 (40%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + +G + ++ E L + D+ ++ L G Sbjct: 8 ILVVDDEPSITEFVSYALKKEGFFTDVVDNGEDALALATKNSYDLFVLDIML--PGMDGY 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116 EL R +R+ + VP++ +S + + + G DD + KP RE++AR Sbjct: 66 ELCRRLRSKTTVPVLFLSARDTELDKVVGLEIGGDDYLAKPFGVRELIARVRALLRRGSG 125 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 +N+ I + D L RE +L LM N GK V++ + Sbjct: 126 GDFPGANHAVTASGITLDEDAHTASGANGEIDLTPREFELLASLMKNAGKVVSREDLLRD 185 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 +G ++ E V++HI +LR K+ + V++ R GY Sbjct: 186 AWG-WEYLTETKTVDTHIKRLRDKIESAGYDPGLVETVRGYGYRF 229 >gi|172040225|ref|YP_001799939.1| two-component system response regulator MprA [Corynebacterium urealyticum DSM 7109] gi|171851529|emb|CAQ04505.1| two-component system response regulator MprA [Corynebacterium urealyticum DSM 7109] Length = 231 Score = 155 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 48/227 (21%), Positives = 89/227 (39%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V++ +G S+ E S R D+ ++ L Sbjct: 3 ILVVDDDPAVRESLRRSLIFNGYSIVLAADGEEALAKVQSERPDMVILDVM--MPKLDGL 60 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARVA 113 E+ R +R+ P++ ++ S+ + D+G DD + KP R ++ R A Sbjct: 61 EVCRELRSQGEDTPILLLTARDSVSERVAGLDAGADDYLTKPFALEELLARTRSLVRRAA 120 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + + RD G L R E +LE L+ N K +++T I Sbjct: 121 RPAAVDTQQIEILKFEDLELDPATRDVTRGGRQISLTRTEFALLELLLRNPRKVLSRTTI 180 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G +D N +E +I LR+K + + R +GY + Sbjct: 181 LEDVWG-YDFPTSGNALEVYIGYLRRKTEADGEPRLIQTVRGVGYVL 226 >gi|33862419|ref|NP_893979.1| two-component response regulator [Prochlorococcus marinus str. MIT 9313] gi|33640532|emb|CAE20321.1| two-component response regulator [Prochlorococcus marinus str. MIT 9313] Length = 290 Score = 155 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 53/231 (22%), Positives = 95/231 (41%), Gaps = 16/231 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V + G + E + + D+ ++ L Sbjct: 28 ILVVDDEPAVLRILVMRLQLAGYRVICAEDGEEALEIFHREQPDLLVLDVML--PKMDGF 85 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R +RA S VP+I +S ++ + D G DD + KP +E+ AR+A I RR+ Sbjct: 86 AVCRRLRAESCVPIIFLSALEAISERVAGLDLGADDYIPKPFSPKELEARIATILRRVGP 145 Query: 122 SNNRAETGPIR------------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 + AE + V ++ R GE L E +LE L G+ V Sbjct: 146 GSATAEIRDLPVGQGVLRVGDLVVDTNRRQVSRAGERIGLTYTEFSLLELLFREPGRVVP 205 Query: 170 KTQIFSAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGY 218 + +I ++G A + VV+ ++++LR KL + + + R +GY Sbjct: 206 RAEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 256 >gi|332702026|ref|ZP_08422114.1| two component transcriptional regulator, winged helix family [Desulfovibrio africanus str. Walvis Bay] gi|332552175|gb|EGJ49219.1| two component transcriptional regulator, winged helix family [Desulfovibrio africanus str. Walvis Bay] Length = 227 Score = 155 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 39/225 (17%), Positives = 88/225 (39%), Gaps = 11/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + G + D+ ++ L G Sbjct: 6 ILIVEDDEDILQLIKFNVESAGYDAITASDGLEALNKARRHMPDLILLDLML--PGMDGF 63 Query: 62 ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AI 115 E+ + ++ S ++P++ ++ + + G DD V KP REI+ RV Sbjct: 64 EVCKELKRGSETGRIPILMLTARGEEVDRIVGLELGADDYVVKPFSPREIILRVRAVLRR 123 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + + V + E+ + L E ++L L+ N G+ + + Q+ + Sbjct: 124 NKGEEDVRQSWRRERLSVDMEAHRAEIDDQELLLTATEFKLLSELIRNPGRVLTREQLLN 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G ++ V++H+ +LR+KL + V++ R +GY Sbjct: 184 TVWG-YEFEGYARTVDTHVRRLRQKLGDY--AKFVETVRGVGYRF 225 >gi|33312479|gb|AAQ04067.1|AF432143_2 two-component response regulator [Paenibacillus popilliae] gi|40363826|gb|AAR84672.1| two-component response regulator [Paenibacillus popilliae] Length = 231 Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats. Identities = 50/228 (21%), Positives = 82/228 (35%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD A + D +G + + + + + D+ ++ Sbjct: 6 ILIADDDAEIADLVAIHLEKEGYRVIKVSDGQETIDVIQNQPIDLLILDIM--MPKMDGF 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR +P+I +S S + G DD + KP E++ARV A RR Sbjct: 64 EVTRRIREKHNMPIIFLSAKTSDFDKVQGLVIGADDYMTKPFIPIELVARVNAQLRRFMK 123 Query: 122 SNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N + + R + G+ L +E IL L +N K IF Sbjct: 124 LNQPKTKQNSNLEFGGLTISPEQRTVTLYGKNIELTPKEFEILFLLASNPNKVYRAEDIF 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSID 221 ++G N V HI LRKKL + + +GY + Sbjct: 184 QKVWGDAYYEGG-NTVMVHIRTLRKKLEEDKRKNKLIQTVWGVGYKFN 230 >gi|18309624|ref|NP_561558.1| DNA-binding response regulator [Clostridium perfringens str. 13] gi|18144301|dbj|BAB80348.1| two-component response regulator [Clostridium perfringens str. 13] Length = 231 Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats. Identities = 49/227 (21%), Positives = 95/227 (41%), Gaps = 9/227 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD +++ +G E + + + D+ ++ L LE Sbjct: 7 LIVDDEEHIRELIKFNLKKEGYDTEVAVNGTEALKVIREIKFDLILLDLML--PEIDGLE 64 Query: 63 LPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYR 117 + + IR S +P++ I+ + + G DD + KP RE++ARV A Sbjct: 65 VCKEIRRNEETSDIPVMMITAKGEEFDKVLGLELGADDYITKPFSIRELMARVKALLRRS 124 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 +K N + G + V R+ + L +E +L+ L+ N+G + + + I Sbjct: 125 NVKKEENIIKFGDVVVNFKTREVTKGTQNVELTLKEFELLKLLIKNKGNILTRELLLDKI 184 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223 +G ++ E V+ HI LRKK+ + + + R +GY N Sbjct: 185 WG-YEYIGETRTVDVHIRHLRKKIESDDKNPQYIQTIRGVGYKFTSN 230 >gi|331268334|ref|YP_004394826.1| winged helix family two component transcriptional regulator [Clostridium botulinum BKT015925] gi|329124884|gb|AEB74829.1| two component transcriptional regulator, winged helix family [Clostridium botulinum BKT015925] Length = 228 Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats. Identities = 42/224 (18%), Positives = 93/224 (41%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD + + G S E + + + D+ ++ L + Sbjct: 8 ILIIDDDENICEIIKMYLESSGYSTEICYDGKSAQSAFFEYKPDLVLLDVML--PHMDGI 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 ++ + IR S+ P+I ++ + + G DD + KP +E++AR+ Y Sbjct: 66 DVLKWIRKDSETPVIMLTAKGETFDKVLALELGADDYIVKPFEPKELIARIKAVLRRYNA 125 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 V + + + + + + +P +E +L YL +N K + Q+ ++ Sbjct: 126 ENVDKDVLKFRGLTIDINSYIVIYKENEIKMPPKEFELLYYLASNTNKVFTREQLLCEVW 185 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 G +D + V+ HI +LR+KL+ + +++ +GY + Sbjct: 186 G-YDYPGDSRTVDVHIKRLREKLQGDQNWQ-IETVWGVGYKFEV 227 >gi|317122420|ref|YP_004102423.1| transcriptional regulator [Thermaerobacter marianensis DSM 12885] gi|315592400|gb|ADU51696.1| two component transcriptional regulator, winged helix family [Thermaerobacter marianensis DSM 12885] Length = 235 Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats. Identities = 44/225 (19%), Positives = 92/225 (40%), Gaps = 8/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++ G ++ + R D+ ++ L G Sbjct: 3 ILVVDDEAPMRALLRLFLEQHGFAVSEAEDGYEALERVRTERPDLVLLDIML--PGIDGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117 + RI+R S VP+I ++ ++ + ++G DD + KP I A + + Sbjct: 61 AVCRILRRESDVPVIMLTARDDVRDRVSGLEAGADDYLVKPFAEEELLARIRAVLRRTPK 120 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 +R GP+ + R+ G L +E +L L + G+ + + +I + Sbjct: 121 VEGRPADRVIVGPLLIDVPAREAYCHGRRLNLTPKEFDLLALLARHPGQVLDRARIIERV 180 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 +G +D + V++H+ LR KL +++ R +GY ++ Sbjct: 181 WG-WDYDGDVRTVDTHVKTLRAKLVAAGCSRHLIETVRSIGYRLN 224 >gi|227810120|ref|ZP_03989033.1| two-component system transcriptional regulator [Acidaminococcus sp. D21] gi|226904700|gb|EEH90618.1| two-component system transcriptional regulator [Acidaminococcus sp. D21] Length = 232 Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats. Identities = 34/226 (15%), Positives = 78/226 (34%), Gaps = 9/226 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++ DD A +++ F +G + + + D+ ++ E Sbjct: 8 LIADDEAQIREILSLYFKKEGFKVIEAADGAEALVQIQAGKPDIILLDIM--MPVLDGFE 65 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV-----NKPIHHREILARVAAIYR 117 + + +R S VP+I ++ + + G DD + + + R + Sbjct: 66 VCKQVRKISDVPIIMLTAKDFDDDRILGLEMGADDYIAKPFNTREVVARVKAVLRRSSQF 125 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + E + + G +E +L L +N G ++ Q+ I Sbjct: 126 LQSQNKQVLEYPDLMINLSEYRVVAFGREVIFTAKEMELLWCLASNPGIVFSRNQLLEKI 185 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSIDW 222 +G + + V++HI ++R KL + + +GY + Sbjct: 186 WG-YTYYGDTRTVDTHIKRVRHKLDIPKDAKWDIVTVWGVGYKFEV 230 >gi|261407294|ref|YP_003243535.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261283757|gb|ACX65728.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] Length = 232 Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats. Identities = 50/229 (21%), Positives = 89/229 (38%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + + D S++ E L + D+ ++ L + Sbjct: 5 ILLVEDDNDINQLIESQLKQDHYSVDSARDGEEALALFQKEKFDLILLDLML--PKVNGM 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112 EL + IR S+VP++ IS S G DD ++KP E A V Sbjct: 63 ELLKHIRETSKVPVLIISAKGSDLDKAMGLGFGADDYISKPFSMIELTARVQAAIRRATV 122 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 A + + +V+G+ PL +E IL+ L+ + + K Q Sbjct: 123 YAETESKPADPPVITFKDLVLDLHSFSVKVKGKSVPLTAKEFHILKLLLTHHSRVFTKEQ 182 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220 I+ I+ D ENV+ HI +LR+K+ + + + +GY + Sbjct: 183 IYQLIW-EEDYYGNENVINVHIRRLREKIEEDPSAPQYIRTIWGIGYKM 230 >gi|126731218|ref|ZP_01747025.1| phosphate regulon transcriptional regulatory protein PhoB [Sagittula stellata E-37] gi|126708129|gb|EBA07188.1| phosphate regulon transcriptional regulatory protein PhoB [Sagittula stellata E-37] Length = 229 Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats. Identities = 54/223 (24%), Positives = 94/223 (42%), Gaps = 8/223 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L++D ++ +G + + E + + D+ ++ L +E Sbjct: 9 LLVEDEPAQREVLSYNLEAEGFRVASAGNGEEALLMMAEENPDIVVLDWML--PNVSGIE 66 Query: 63 LPRII---RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 + R I VP+I +S + ++G DD V KP E++ARV A RR Sbjct: 67 VCRQIKTKPETRNVPIIMLSARSEEVDRVRGLETGADDYVVKPYSVVELMARVRAQLRRA 126 Query: 120 KVSNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + S R E I + S+ G+ L E R+L M G+ ++ Q+ + Sbjct: 127 RPSAAGLRLEYEDIVLDSETHRVTRNGKPLKLGPTEFRLLTTFMEKPGRVWSREQLLDRV 186 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G D V+ V+ HI +LRK L G D + + R GY++ Sbjct: 187 WGR-DIYVDTRTVDVHIGRLRKALSQHGGQDLLRTVRGAGYAL 228 >gi|323490231|ref|ZP_08095447.1| winged helix family two component transcriptional regulator [Planococcus donghaensis MPA1U2] gi|323396071|gb|EGA88901.1| winged helix family two component transcriptional regulator [Planococcus donghaensis MPA1U2] Length = 231 Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats. Identities = 43/228 (18%), Positives = 90/228 (39%), Gaps = 10/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D +++ G + L + D+ ++ G L Sbjct: 6 IMIVEDDDGIRELLRLFLLKKGYEVVQAEDGFQALALLEKEKPDLILLDV--EMPGMDGL 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILA------RVAAI 115 E+ R IR + +P++ +S L + ++G DD + KP E+ A R Sbjct: 64 EVCRRIRLKTTLPILFVSYRKELVYKIQGLEAGGDDYITKPFDFNELEARIRAILRRNGW 123 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 ++ + + + D R+ ++G L +E ++L L + Q++ Sbjct: 124 RNNVEDQLTILKYKDLHIHVDARELYLEGAQVKLYHKEFQLLLLLAQTPNRVWTAEQLYD 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 ++G + + V+ HISKLRKK+ + + + + R GY W Sbjct: 184 QVWGYY-SEGDVQTVKVHISKLRKKIEKDPANPEFIQTVRGFGYKFIW 230 >gi|163791510|ref|ZP_02185916.1| response regulator [Carnobacterium sp. AT7] gi|159873233|gb|EDP67331.1| response regulator [Carnobacterium sp. AT7] Length = 241 Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats. Identities = 41/229 (17%), Positives = 90/229 (39%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ + + ++ E + D+ ++ L + Sbjct: 8 LLVVDDEDRIRRLLKMYLERENYVVFEADNGEDAIKMALENDYDLILLDLML--PKMDGI 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ IR P++ ++ + ++ F+ G DD + KP RE++ RV+AI +R + Sbjct: 66 EVAGKIREAKDTPIMMLTAKGEEVSRIEGFEVGADDYIVKPFSPREVVLRVSAILKRTQS 125 Query: 122 SNNR-------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 S + E + G L +E +L YL + + + Q+ Sbjct: 126 SKPKEKANPDLIEMPHFEIDDQSHRVLADGNPVNLTPKEYDLLLYLAQSPDQIFGREQLL 185 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGF--DPVDSKRFLGYSID 221 ++ ++ + V++HI +LR+KL + + LGY + Sbjct: 186 REVW-KYEFFGDLRTVDTHIKRLREKLTKHSEPAAKMIVTVWGLGYKFN 233 >gi|229032233|ref|ZP_04188206.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH1271] gi|228729013|gb|EEL80016.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH1271] Length = 239 Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats. Identities = 40/233 (17%), Positives = 85/233 (36%), Gaps = 15/233 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + G + E ++ R D+ ++ L + Sbjct: 5 ILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERPDLIILDLML--PKMDGM 62 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILA 110 E+ + +R P++ ++ + + G DD + KP R Sbjct: 63 EVCKELRLQRVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTK 122 Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + +++ + + QG L +E +L YL N+ + + + Sbjct: 123 LQQEEQVKDTSDEESITIAELKILPEFYEAYFQGRKLELTPKEFELLVYLAKNKSRVLTR 182 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 Q+ SA++ +D A + +V+ HIS LR K+ + + R LGY ++ Sbjct: 183 DQLLSAVW-NYDFAGDTRIVDVHISHLRDKIEQNTKKPTYIKTIRGLGYKLEE 234 >gi|148253503|ref|YP_001238088.1| two component transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146405676|gb|ABQ34182.1| two component transcriptional regulator, winged helix family [Bradyrhizobium sp. BTAi1] Length = 235 Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats. Identities = 49/225 (21%), Positives = 93/225 (41%), Gaps = 8/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G +E + + D+ ++ L G + Sbjct: 5 ILVVEDEEALTTLLRYNLETEGYEVETVGRGDEADTRLKERVPDLVVLDWML--PGLSGI 62 Query: 62 ELPRII---RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IY 116 EL R + Q+P+I ++ + +G DD + KP E+LARV Sbjct: 63 ELCRRLRTRPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLLRR 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + G I + + R G L E R+LE+ + + G+ ++ Q+ + Sbjct: 123 ASPERLATVLSYGDIELDREKRRVARSGRPIDLGPTEYRLLEFFLEHPGRVFSREQLLDS 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G D ++E V+ HI +LRK L DP+ + R GY++D Sbjct: 183 VWGR-DIYIDERTVDVHIGRLRKLLNPGREQDPIRTVRGAGYALD 226 >gi|168185772|ref|ZP_02620407.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Clostridium botulinum C str. Eklund] gi|169296218|gb|EDS78351.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Clostridium botulinum C str. Eklund] Length = 223 Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats. Identities = 46/226 (20%), Positives = 92/226 (40%), Gaps = 12/226 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D +++ + + G +E + + + D+ ++ L Sbjct: 5 ILVVEDDFDIQEIISEVLKNSGYIVEVASDGLSGIEMFEKYKFDLIILDIML--PKIDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116 + IIR S VP+I ++ + F+ +DD + KP ++ R Sbjct: 63 VVCEIIRKKSDVPIIMLTALGEEDDEIKGFELKIDDYITKPFSINLLIKRVEAVLRRYSN 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 K S I+++ V L +E +ILE LM N G+ ++ + Sbjct: 123 NPSKNSEATLVFEEIKIYPSNYKTLVNENEIELTVKEFQILESLMKNPGQVFTRSSLLDM 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 I+G +D + V+++HI LR+KL D + + R +GY I+ Sbjct: 183 IWG-YDYFGDTRVIDTHIKNLRQKL----NVDYIKTIRGVGYKIEK 223 >gi|228924359|ref|ZP_04087606.1| hypothetical protein bthur0011_53100 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228835308|gb|EEM80702.1| hypothetical protein bthur0011_53100 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 242 Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats. Identities = 47/228 (20%), Positives = 92/228 (40%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD ++D + ++ E L + + D+ ++ + Sbjct: 12 ILIADDEKEIRDLLKKYMERELYKVDVAIDGEHALSLFNKNKYDLFILDLM--MPKIDGI 69 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 E+ R +R + VP++ ++ + G DD + KP E++ARV A+ RR Sbjct: 70 EVCRKLREKTNVPILMLTAKNHETDKILGLSMGADDYITKPFSINEVVARVKALMRRFLV 129 Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 R E I + +G+ PL +E +L + +N + K+Q+ Sbjct: 130 LGSEAGDREQTRIEFKEISIDMKKYTVFKEGKEIPLTAKEMELLRFFASNPEQVFTKSQL 189 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 F ++G + ++N V HI KLRKK+ + + + +GY Sbjct: 190 FRNVWG-DNYLEDDNTVMVHIRKLRKKIEVDPSNPQLIQTVWGIGYKF 236 >gi|52786788|ref|YP_092617.1| PhoP [Bacillus licheniformis ATCC 14580] gi|163119589|ref|YP_080203.2| two-component response regulator [Bacillus licheniformis ATCC 14580] gi|319647320|ref|ZP_08001542.1| PhoP protein [Bacillus sp. BT1B_CT2] gi|52349290|gb|AAU41924.1| PhoP [Bacillus licheniformis ATCC 14580] gi|145903099|gb|AAU24565.2| two-component response regulator [Bacillus licheniformis ATCC 14580] gi|317390667|gb|EFV71472.1| PhoP protein [Bacillus sp. BT1B_CT2] Length = 240 Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats. Identities = 46/234 (19%), Positives = 93/234 (39%), Gaps = 16/234 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + G + E + D+ ++ L + Sbjct: 5 ILVVDDEESIVTLLKYNLERSGYHVVTAMDGEAGLLKAIEEKPDLIVLDLML--PKMDGI 62 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ + +R P++ ++ + + G DD + KP RE+ ARV AI RR + Sbjct: 63 EVCKELRQKKLMYPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVTARVKAILRRTQ 122 Query: 121 VSNNRAETGPIRV-----------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 + + E + + Q E L +E +L YL ++G+ + Sbjct: 123 TLSVQPEETEEPDAGELIIGELKILPEHYEVYFQNERLELTPKEFELLLYLGRHKGRVLT 182 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 + + +A++ +D A + +V+ HIS LR K+ + + + R LGY ++ Sbjct: 183 RDLLLNAVW-NYDFAGDTRIVDVHISHLRDKIEKNTKKPEYIKTIRGLGYKMEE 235 >gi|225027575|ref|ZP_03716767.1| hypothetical protein EUBHAL_01832 [Eubacterium hallii DSM 3353] gi|224955091|gb|EEG36300.1| hypothetical protein EUBHAL_01832 [Eubacterium hallii DSM 3353] Length = 229 Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats. Identities = 42/225 (18%), Positives = 90/225 (40%), Gaps = 10/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD L+ G D + ++ E + D+ ++ L E Sbjct: 6 LVVDDERLIVKGIKFSLVQDDMEVDCAYDGEEALEMAKKTEYDIVLLDVML--PKMDGFE 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH------HREILARVAAIY 116 + + IR S +P+I ++ + + G DD + KP + + + R ++ Sbjct: 64 VCQRIREFSNMPIIMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRSSKR 123 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 E +++ D R V+ + L +E +LE L + K ++ + + Sbjct: 124 ATEDEKKKIFEKNGLKIDCDSRRVFVEDKEVKLTAKEYDLLELLSFHPNKVYSRENLLNI 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++G +D + V+ HI +LR+K+ N + +K +GY Sbjct: 184 VWG-YDYPGDVRTVDVHIRRLREKIEKNPGEPLYIHTKWGVGYYF 227 >gi|327440830|dbj|BAK17195.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Solibacillus silvestris StLB046] Length = 238 Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats. Identities = 37/231 (16%), Positives = 83/231 (35%), Gaps = 14/231 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD ++ +G +E + E + ++ + LE Sbjct: 8 LIVDDEDRIRRLLKMYLEREGYLVEEAENGEQALSMALEKDYHCILLDIM--MPEKDGLE 65 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARVA 113 + +R P+I ++ + F+ G DD + KP RE + V Sbjct: 66 VCAELREKKTTPIILLTAKGEEANRVQGFELGADDYIVKPFSPREVVLRVKAILRRSAVF 125 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + S + + + D G L +E +L +L + K + Q+ Sbjct: 126 SPVSNSSSSKDLVVFPHLTIDHDAHRVTADGTEVNLTPKEYELLYFLAKSPDKVFDREQL 185 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSIDW 222 ++ +D + V++H+ +LR+KL ++ + + +GY + Sbjct: 186 LKEVW-HYDFFGDLRTVDTHVKRLREKLNRVSENAAKMIVTVWGVGYKFEV 235 >gi|326383751|ref|ZP_08205436.1| two-component response regulator MprA [Gordonia neofelifaecis NRRL B-59395] gi|326197515|gb|EGD54704.1| two-component response regulator MprA [Gordonia neofelifaecis NRRL B-59395] Length = 227 Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats. Identities = 47/223 (21%), Positives = 93/223 (41%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V++ +G ++E + R D+ ++ L Sbjct: 3 ILVVDDDRAVRESLRRSLSFNGYTVETAGDGLEALEKVIAERPDLMVLDVM--MPRLDGL 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +R+ P++ ++ S+ + D+G DD + KP E+LAR+ ++ RR Sbjct: 61 EVCRRLRSAGDDLPILVLTARDSVSERVSGLDAGADDYLPKPFALEELLARLRSLLRRTT 120 Query: 121 VSNNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 +E R+ L R E +LE LM+N + + +++I + Sbjct: 121 RDEEESEAVSFADLTLDPVTREVTRGERQISLTRTEFALLEMLMSNPKRVLTRSRILEEV 180 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G +D N +E +I LR+K + + R +GY + Sbjct: 181 WG-YDFPTSGNALEVYIGYLRRKTEADGEPRLIHTVRGVGYVL 222 >gi|229019811|ref|ZP_04176613.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH1273] gi|229026037|ref|ZP_04182420.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH1272] gi|228735253|gb|EEL85865.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH1272] gi|228741482|gb|EEL91680.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus AH1273] Length = 239 Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats. Identities = 40/233 (17%), Positives = 84/233 (36%), Gaps = 15/233 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + G + E ++ R D+ ++ L + Sbjct: 5 ILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERPDLIILDLML--PKMDGM 62 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILA 110 E+ + +R P++ ++ + + G DD + KP R Sbjct: 63 EVCKELRLQRVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTK 122 Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 +++ + + QG L +E +L YL N+ + + + Sbjct: 123 LQQEEQVSEAPDEESIIIAELKILPEFYEAYFQGRKLELTPKEFELLVYLAKNKSRVLTR 182 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 Q+ SA++ +D A + +V+ HIS LR K+ + + R LGY ++ Sbjct: 183 DQLLSAVW-NYDFAGDTRIVDVHISHLRDKIEQNTKKPTYIKTIRGLGYKLEE 234 >gi|52144960|ref|YP_081869.1| response regulator [Bacillus cereus E33L] gi|51978429|gb|AAU19979.1| response regulator [Bacillus cereus E33L] Length = 237 Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats. Identities = 42/228 (18%), Positives = 91/228 (39%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ +D +++ + ++ + + L + ++ ++ + Sbjct: 6 ILIAEDDKEIRNLLKIYLERELYMVDTAINGDEALQLFNQNNYNLVILDLM--MPKVDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R + VP++ ++ + G DD + KP E++ARV A+ RR V Sbjct: 64 EVCRKLRDKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVIARVKALMRRFLV 123 Query: 122 SNNRAETGPIR--------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + A + + E L +E +L++ +N G+ KTQ+ Sbjct: 124 LGSDANIQEKTTLTFKGLLIDLNTYTVHTNKEEINLTGKELELLKFFTSNPGQVFTKTQL 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 F ++ + ++N V HI KLRKK+ + + + +GY Sbjct: 184 FRNVWDN-NYIEDDNTVMVHIRKLRKKIEVDPSNPKFIQTVWGIGYKF 230 >gi|323490388|ref|ZP_08095603.1| two-component response regulator (YclK) [Planococcus donghaensis MPA1U2] gi|323396058|gb|EGA88889.1| two-component response regulator (YclK) [Planococcus donghaensis MPA1U2] Length = 226 Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats. Identities = 46/226 (20%), Positives = 93/226 (41%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D V F +G++ E D+ ++ L G + Sbjct: 3 ILVVEDNPSVSSMLELFFSKEGINGEFAADGLEGYEKYKEGGHDLLILDWML--PGMDGI 60 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L R IR S VP+I ++ S + F+ G DD V KP ++AR+ A+ RR++ Sbjct: 61 ALCRKIREEGSSVPIIMLTAKDSESDQVIGFEMGADDYVTKPFSPLTLMARIKAVTRRVQ 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEV----FPLPRRERRILEYLMANRGKRVAKTQIFSA 176 ++ F+ ++ + L +E +L + + + + ++ Q+ Sbjct: 121 KPEPVSDLIQTIHFTVNKETRDISKDGQAVDSLTPKEFDLLVFFLQHPKQVFSREQLLEQ 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 ++G + +E V+ HI +LRKK+ G + +GY + Sbjct: 181 VWG-YQFYGDERTVDVHIKRLRKKI--DGGDKLFHTVWGVGYKFEE 223 >gi|260437716|ref|ZP_05791532.1| DNA-binding response regulator ResD [Butyrivibrio crossotus DSM 2876] gi|292809739|gb|EFF68944.1| DNA-binding response regulator ResD [Butyrivibrio crossotus DSM 2876] Length = 235 Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats. Identities = 37/230 (16%), Positives = 82/230 (35%), Gaps = 14/230 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + N E + D+ ++ L G Sbjct: 7 ILIVDDDNNIAELISLYLTKECFETLIVNDGENALTAFFRFKPDLILLDLML--PGIDGY 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILAR 111 ++ R IR + P+I +S + + + G DD + KP + Sbjct: 65 QVCREIRRENNTPIIMLSAKGEIFDKVLGLELGADDYMIKPFDSKELVARVKAVLRRYTA 124 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + K S E + + G+ +P +E +L +L + + + Sbjct: 125 TQSNDTPEKPSGEYIEYPDLIINLSNYSVIYMGKPVDMPPKELELLYFLATSPNQVFTRE 184 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 Q+ I+G ++ + V+ HI +LR+K+ + + + +GY + Sbjct: 185 QLLDHIWG-YEYVGDTRTVDVHIKRLREKIHDH-EKWSIGTVWGVGYKFE 232 >gi|229076091|ref|ZP_04209059.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock4-18] gi|229099049|ref|ZP_04229983.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock3-29] gi|229105217|ref|ZP_04235866.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock3-28] gi|229118080|ref|ZP_04247439.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock1-3] gi|228665303|gb|EEL20786.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock1-3] gi|228678143|gb|EEL32371.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock3-28] gi|228684277|gb|EEL38221.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock3-29] gi|228706954|gb|EEL59159.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Bacillus cereus Rock4-18] Length = 239 Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats. Identities = 49/233 (21%), Positives = 93/233 (39%), Gaps = 15/233 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + G + E ++ R D+ ++ L + Sbjct: 5 ILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERPDLIILDLML--PKMDGM 62 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ + +R P++ ++ + + G DD + KP RE++ARV AI RR K Sbjct: 63 EVCKELRLQRVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTK 122 Query: 121 VSNNRAETGPIRVF----------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + + + QG L +E +L YL N+ + + + Sbjct: 123 LQQEEQVAEAPDEDSILIADLKILPEFYEAYFQGRKLELTPKEFELLVYLAKNKSRVLTR 182 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 Q+ SA++ +D A + +V+ HIS LR K+ + + R LGY ++ Sbjct: 183 DQLLSAVW-NYDFAGDTRIVDVHISHLRDKIEKNTKKPTYIKTIRGLGYKLEE 234 >gi|39996204|ref|NP_952155.1| DNA-binding response regulator [Geobacter sulfurreducens PCA] gi|39982969|gb|AAR34428.1| DNA-binding response regulator [Geobacter sulfurreducens PCA] gi|298505216|gb|ADI83939.1| winged-helix phosphate transcriptional response regulator [Geobacter sulfurreducens KN400] Length = 225 Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats. Identities = 43/225 (19%), Positives = 89/225 (39%), Gaps = 7/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++I+D + D +G L S D+ ++ L G +V Sbjct: 4 ILIIEDERDLADLVAFNLEKEGYRTLTALDGANGLELARSQPPDLILLDLMLPGMMGMEV 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYR 117 ++ + + +P+I ++ + F+ G DD V KP RE + V Sbjct: 64 CKILKKSEKTAHIPVIMLTARGEEIDRVVGFEVGADDYVVKPFSTRELLLRVKAVLRRSL 123 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 K GP+ + ++ V+G+ L E ++L L G+ ++ + + Sbjct: 124 PDKPEGKVINVGPVTIDTERHMVAVEGDDVTLTTTEFKLLLNLAERLGRVQSRDLLLKNV 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +G ++ + V++HI++LR KL + + + R GY ++ Sbjct: 184 WG-YNYVGDTRTVDTHITRLRTKLGQAG--ELIKTVRGFGYKMEE 225 >gi|228477430|ref|ZP_04062066.1| transcriptional regulatory protein [Streptococcus salivarius SK126] gi|228250865|gb|EEK10053.1| transcriptional regulatory protein [Streptococcus salivarius SK126] Length = 235 Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats. Identities = 48/231 (20%), Positives = 95/231 (41%), Gaps = 15/231 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + + + D+ ++ L L Sbjct: 4 ILVVDDERPISDIIKFNLTKEGYEVVTAFDGREALEQFEAEKPDLVILDLML--PELDGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IR S P+I +S S + + G DD V KP +RE+LAR+ A RR + Sbjct: 62 EVAKEIRKTSHTPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARIKAHLRRTET 121 Query: 122 S-----------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 G + + D + +G L RE +L +L + G+ + + Sbjct: 122 IETAAEESSNSGKQEISIGELIIVPDAFVAKKRGNEVELTHREFELLFHLATHMGQVMTR 181 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + ++G +D + V+ I +LR+K+ + + + ++R +GY + Sbjct: 182 EHLLETVWG-YDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYM 231 >gi|329926464|ref|ZP_08280878.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] gi|328939199|gb|EGG35561.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] Length = 232 Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats. Identities = 51/229 (22%), Positives = 89/229 (38%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + + D S+ E L + D+ ++ L + Sbjct: 5 ILLVEDDNDINQLIESQLKQDHYSVASARDGEEALALFQKEKFDLILLDLML--PKVNGM 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112 EL + IR S+VP++ IS S G DD ++KP E A + Sbjct: 63 ELLKHIRETSKVPVLIISAKGSDLDKAMGLGFGADDYISKPFSMIELTARVQAAIRRATL 122 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 A + + +V+G+ PL +E IL+ L+ N + K Q Sbjct: 123 YAETESKPAEPPVIAFKDLVLDLHSFSVKVKGKSVPLTAKEFHILKLLLTNHSRVFTKEQ 182 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220 I+ I+ D ENV+ HI +LR+K+ + G + + +GY + Sbjct: 183 IYQLIW-EEDYYGNENVINVHIRRLREKIEEDPSGPQYIRTIWGIGYKM 230 >gi|46190748|ref|ZP_00121040.2| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bifidobacterium longum DJO10A] gi|189439936|ref|YP_001955017.1| putative response regulator [Bifidobacterium longum DJO10A] gi|189428371|gb|ACD98519.1| Putative response regulator [Bifidobacterium longum DJO10A] Length = 234 Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats. Identities = 56/230 (24%), Positives = 102/230 (44%), Gaps = 13/230 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++ + +G + ++ E L + D+ ++ L G Sbjct: 4 ILIVEDEESYREPLVYQLTREGYDVSAASTGEEGLELFTKGGIDLVLLDLML--PGIDGT 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 L R IR S+VP+I ++ + + + G DD V KP RE+LAR+ A+ RR + Sbjct: 62 ALCRRIREQSRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVMRRNQA 121 Query: 121 --------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + G I + V+GE P +E +LEYLM N+G+ + + Q Sbjct: 122 AAQASGTVDDDIPLVCGDIAMQVGQHQVTVRGETVFFPLKEFELLEYLMQNKGRVMTRHQ 181 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221 + I+G D + ++ H+ ++R K+ + + R LGY ID Sbjct: 182 LIDRIWG-SDYVGDTKTLDVHVKRVRSKIEEDPAHPKYLTTVRGLGYKID 230 >gi|225017308|ref|ZP_03706500.1| hypothetical protein CLOSTMETH_01234 [Clostridium methylpentosum DSM 5476] gi|224949925|gb|EEG31134.1| hypothetical protein CLOSTMETH_01234 [Clostridium methylpentosum DSM 5476] Length = 238 Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats. Identities = 59/231 (25%), Positives = 102/231 (44%), Gaps = 15/231 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L+DD A + + ++G S + E L R D ++ L G L Sbjct: 5 ILLVDDEAHILELLKYTMENEGFSTLQAETGEQALKLLGRERVDAVILDLML--PGIDGL 62 Query: 62 ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 E+ + IR +P++ ++ + + G DD + KP RE++ARV A+ RR Sbjct: 63 EVLKNIRVTPGTKNLPVLMLTAKSEEFDRVIGLELGADDYLCKPFFVRELVARVKAVLRR 122 Query: 119 --------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 K N + GPI + R + +GE+ L +E +L N GK + + Sbjct: 123 AEAPGEPGAKKDNRFLKIGPIEIDEIKRTVKRRGELLELTLKEFDLLRLFAQNPGKVITR 182 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220 +I + I+G +D E V+ HI +LRKK+ + + + R +GY + Sbjct: 183 DEILTKIWG-YDYTGETRTVDVHIRQLRKKIEEDDSNPQYILTVRGVGYKL 232 >gi|332652344|ref|ZP_08418089.1| DNA-binding response regulator [Ruminococcaceae bacterium D16] gi|332517490|gb|EGJ47093.1| DNA-binding response regulator [Ruminococcaceae bacterium D16] Length = 224 Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats. Identities = 49/224 (21%), Positives = 94/224 (41%), Gaps = 5/224 (2%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + ++ +D A ++ +G + ++ L + D++ ++ Sbjct: 4 LILIAEDDADIRGLLKLYLEGEGFRVLEADNGARALDLARAQAPDMAILDIM--MPQLNG 61 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL R +R S +P++ +S + + G DD + KP + EI+ARV A RR Sbjct: 62 FELTRALRKFSDIPILILSAKSQDNDKILGLNLGADDYITKPFNPVEIVARVKAQLRRAS 121 Query: 121 VSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S + + + + G+ L E +IL LM + G+ K Q++ G Sbjct: 122 RSGSDILTVRELTLDTTTFQLTKNGKQILLTPMEYKILALLMRSPGRIYTKIQLYEGAIG 181 Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 + ++N + HISKLR K+ + + + R LGY ++ Sbjct: 182 NY-FEGDDNTMMVHISKLRDKIEDDPKSPRYIITVRGLGYKLEK 224 >gi|302557641|ref|ZP_07309983.1| DNA-binding response regulator ResD [Streptomyces griseoflavus Tu4000] gi|302475259|gb|EFL38352.1| DNA-binding response regulator ResD [Streptomyces griseoflavus Tu4000] Length = 242 Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats. Identities = 46/224 (20%), Positives = 89/224 (39%), Gaps = 9/224 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD V + G ++ ++ D+ ++ L G LE Sbjct: 15 LVVDDDPTVAEIVTGYLDRAGYVVDRAGDGPGALARAAAHWPDLVVLDLML--PGMDGLE 72 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +R VP+I ++ + + G DD V KP RE++ RV ++ RR + + Sbjct: 73 VCRRMRGRGPVPVIMLTARGDEDDRILGLEVGADDYVTKPFSPRELVLRVESVLRRSRPA 132 Query: 123 NNRAETGPI----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 A V R +G L RE +L + + + G+ A+ ++ ++ Sbjct: 133 PAAASGPLRAAGLAVDPAARRATKRGAELALTVREFDLLAFFLRHPGRAFAREELMREVW 192 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221 G + + V H+ +LR K+ + V + +GY D Sbjct: 193 GWD--FGDLSTVTVHVRRLRGKVEDDPARPRLVQTVWGVGYRFD 234 >gi|239828010|ref|YP_002950634.1| two component transcriptional regulator, winged helix family [Geobacillus sp. WCH70] gi|239808303|gb|ACS25368.1| two component transcriptional regulator, winged helix family [Geobacillus sp. WCH70] Length = 234 Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats. Identities = 43/226 (19%), Positives = 94/226 (41%), Gaps = 10/226 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + G ++ N E + + ++ L +E Sbjct: 6 LVVDDEQSIVTLLTYNLEQAGFTVLTANDGEEAIEKVAFEQPAFIILDLML--PKLDGVE 63 Query: 63 LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116 + + +R P++ ++ + + G DD + KP RE++AR Sbjct: 64 VCKQLRQQKVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTQL 123 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 ++ G +++ D + +GE L +E +L YL ++G+ + + Q+ S+ Sbjct: 124 SNGEMETKEIVIGDLKILPDSYEAYFRGERLELTPKEFELLVYLAKHKGRVLTRDQLLSS 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221 ++ +D A + +V+ HIS LR+K+ + + R LGY ++ Sbjct: 184 VW-NYDFAGDTRIVDVHISHLREKIEQDTKKPIYIKTIRGLGYKLE 228 >gi|332980939|ref|YP_004462380.1| winged helix family two component transcriptional regulator [Mahella australiensis 50-1 BON] gi|332698617|gb|AEE95558.1| two component transcriptional regulator, winged helix family [Mahella australiensis 50-1 BON] Length = 227 Score = 155 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 91/224 (40%), Gaps = 9/224 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++ ++G + + L D+ ++ L Sbjct: 6 IMVVEDEERMRQLLHLYMQNEGFEVVDAYDGQQALDLFEKYPMDLVILDVML--PNVDGW 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYR 117 + R IR SQVP+I ++ L FD GVDD V KP +E++ARV Sbjct: 64 TVCRQIRQGSQVPIIMLTARGEENDKLFGFDLGVDDYVVKPFSPKELVARVKALLKRSRG 123 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + + + R + E L +E +L +L ++ G+ ++ Q+ + Sbjct: 124 NANAQDRVIKYESLSIEPLSRRVTINDEDIILTPKEFDLLFFLASHPGQVFSREQLLHHV 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +G +D + V++H+ LR KL N + + +GY D Sbjct: 184 WG-YDFYGDSRTVDAHVKNLRSKLGNYG--RYIVTVWGVGYKFD 224 >gi|157414226|ref|YP_001485092.1| two-component response regulator [Prochlorococcus marinus str. MIT 9215] gi|254526749|ref|ZP_05138801.1| two-component response regulator [Prochlorococcus marinus str. MIT 9202] gi|157388801|gb|ABV51506.1| two-component response regulator [Prochlorococcus marinus str. MIT 9215] gi|221538173|gb|EEE40626.1| two-component response regulator [Prochlorococcus marinus str. MIT 9202] Length = 248 Score = 155 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 53/231 (22%), Positives = 96/231 (41%), Gaps = 16/231 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V + G + + E D+ ++ L Sbjct: 6 ILVVDDEPAVLKVLVTRLQLAGYQVYSATNGEEALESFHRDSPDLIVLDVML--PKMDGF 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R IRA S VP+I ++ ++ + D G DD ++KP +E+ AR+A I RR+ Sbjct: 64 AVCRRIRAESVVPIIFLTALEAISERVAGLDLGADDYLSKPFSPKELEARIATILRRMGP 123 Query: 122 SNN------------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 + + G + V ++ R GE L E +LE L GK V Sbjct: 124 TVTVTETKEVPSGKGVMKFGSLVVDTNRRQVSRAGERISLTYTEFSLLELLFDEPGKVVP 183 Query: 170 KTQIFSAIYG-LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218 + +I ++G A + VV+ ++++LR KL + + + + R +GY Sbjct: 184 RAEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 234 >gi|58337917|ref|YP_194502.1| response regulator [Lactobacillus acidophilus NCFM] gi|227902916|ref|ZP_04020721.1| response regulator [Lactobacillus acidophilus ATCC 4796] gi|58255234|gb|AAV43471.1| response regulator [Lactobacillus acidophilus NCFM] gi|227869332|gb|EEJ76753.1| response regulator [Lactobacillus acidophilus ATCC 4796] Length = 233 Score = 155 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 42/226 (18%), Positives = 88/226 (38%), Gaps = 11/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D V +G + + L + + ++ L + Sbjct: 8 ILLVEDEEAVASFVKTELEFEGYQVIWAQDGKEALELFQKEKPTLILLDWML--PVYDGI 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAA 114 + R IR S+VP+I ++ S D G+DD + KP E+ R+ Sbjct: 66 TVLRRIRKKSEVPIIMLTAKNSTSDISSALDQGLDDYITKPFEIEELFARIRVILRRLEK 125 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 ++ + S GP ++ + E L +E ++ LM + K ++ ++ Sbjct: 126 SNKQKENSTISFNFGPFKIDLVKHEFFSNDEKIYLTPKEFALMTELMRDPEKVKSRDELL 185 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G +D + N V+ +I +R K+ + + + R LGY + Sbjct: 186 DVVWG-YDFVGQTNTVDVYIRTIRNKIGDP-NKKLIQTVRGLGYCL 229 >gi|312898518|ref|ZP_07757908.1| response regulator receiver domain protein [Megasphaera micronuciformis F0359] gi|310620437|gb|EFQ04007.1| response regulator receiver domain protein [Megasphaera micronuciformis F0359] Length = 226 Score = 155 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 49/226 (21%), Positives = 97/226 (42%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD AL++ +G + + + + + D+ ++ G Sbjct: 4 ILIADDEALMRQLVADFLRPEGYEVLEAVDGKQALDIFNEQKPDLVLLDVM--MPGYDGW 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-----IY 116 + R IR S VP+I I+ L +D GVDD + KP + ++A++ A Sbjct: 62 TVCREIRRTSTVPIIMITAKDEEIDQLFAYDLGVDDYITKPFSPKLLVAKMKALLRRLHG 121 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + + + + + G+ L E ++L YLM N GK +++ QI + Sbjct: 122 EGEENGADAVPAEGVAIDREAHQVLIDGKSTDLSPTEYKLLNYLMTNAGKALSRRQILNK 181 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 ++ ++ + V++HI++LR KL N+ + + R GY D Sbjct: 182 VW-NYEYYGDLRTVDTHINRLRIKLGNRGS--YIQTVRGYGYRYDK 224 >gi|296132859|ref|YP_003640106.1| two component transcriptional regulator, winged helix family [Thermincola sp. JR] gi|296031437|gb|ADG82205.1| two component transcriptional regulator, winged helix family [Thermincola potens JR] Length = 229 Score = 155 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 49/226 (21%), Positives = 98/226 (43%), Gaps = 9/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + + +D ++ E + S R D+ ++ L G+ Sbjct: 5 ILVVDDDSNICELLVVYLEED-FQVKTVFDGNNLEQVISEYRPDLILLDVML--PGKNGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYR 117 ++ R IR ++P+I +S + + G DD + KP RE++ARV + Sbjct: 62 DICREIRDKYEIPIIFLSAKGEEIDKVLGLEFGADDYITKPFSPREMVARVKAVLRRVQN 121 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 R + + + + R +V L +E IL + + GK + +I + I Sbjct: 122 RSGKKRDELIFPHLVIDLEARTVQVNNSYVDLTPKEFDILVLMARHNGKVFTREEILNRI 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDW 222 +G +D A E V+SHI ++R+K+ + + + LGY + Sbjct: 182 WG-YDFAGETRAVDSHIKRIRQKIEKIPGAPEYLHTVWGLGYRFEV 226 >gi|271966272|ref|YP_003340468.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270509447|gb|ACZ87725.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 233 Score = 155 bits (391), Expect = 4e-36, Method: Composition-based stats. Identities = 49/224 (21%), Positives = 96/224 (42%), Gaps = 10/224 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD +++ +G ++ + R D+ ++ + Sbjct: 10 LVVDDEPNIRELLSEALELNGFAVRTAADGRQALEAVARERPDIIVLDVMMPAP--DGFT 67 Query: 63 LPRIIRAHSQVP-LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R +R P L+ ++ ++ + +G DD V KP E++ R+ AI RR++ Sbjct: 68 VARKLREAGDSPLLLFLTAKDAVSDRIAGLTAGGDDYVTKPFSLEEVVLRLRAIMRRMRP 127 Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + + G +R G L E +L YLM N + V+K QI Sbjct: 128 AQEQVDDGVLRYADLELDEQAHTVRRAGRAIHLSPTEFSLLRYLMINAERVVSKAQILDR 187 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +D E +VES+IS LR+K+ + G + + R +GY + Sbjct: 188 VWD-YDFEGESRIVESYISYLRRKI-DAEGPPLIHTLRGVGYRL 229 >gi|325681118|ref|ZP_08160648.1| response regulator receiver domain protein [Ruminococcus albus 8] gi|324107040|gb|EGC01326.1| response regulator receiver domain protein [Ruminococcus albus 8] Length = 231 Score = 155 bits (391), Expect = 5e-36, Method: Composition-based stats. Identities = 54/229 (23%), Positives = 95/229 (41%), Gaps = 11/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ +D A + + + G + ++ L S D++ + Sbjct: 5 ILVAEDDADICEVLRLYLENAGFDVISADNGIRAYDLLKSESPDLAIFDIM--MPEMNGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL + +R S +P+I +S + + D G DD + KP + E++ARV + RR Sbjct: 63 ELTKRVRITSSIPIIFLSAMNADSDKILGLDIGADDYITKPFNPLEVVARVQSNLRRKYK 122 Query: 122 SNNRAETGPI-------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 ++ A + + + GE L E +IL LM G+ K QI+ Sbjct: 123 LDSTAHQSGELLTVGELTLDTKKFTLQKNGEDIQLTPTEFKILSTLMEKPGRVFTKAQIY 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDW 222 I G + ++N + HISKLR+KL + + + R LGY I+ Sbjct: 183 ERINGEY-FENDDNTMMVHISKLREKLGDDSKRPKYLKTVRGLGYKIEK 230 >gi|82502198|gb|ABB80126.1| SubR [Bacillus subtilis] Length = 238 Score = 155 bits (391), Expect = 5e-36, Method: Composition-based stats. Identities = 43/227 (18%), Positives = 87/227 (38%), Gaps = 12/227 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++ DD ++D + ++ E L + ++ +E Sbjct: 7 LIADDEKEIRDLLKTYLKRECYEVDVAVDGEDALRLFEQNHYHLVILDVM--MPKIDGIE 64 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119 + R +R H+ VP++ ++ + G DD + KP E+LAR+ A+ RR Sbjct: 65 VCRRMRNHTNVPILMLTAKDLEGDKILGLSIGADDYITKPFSVNEVLARIKAMLRRFLVL 124 Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + + + G+ L +E +L++ +N G+ KTQ+F Sbjct: 125 GSESRSDEQSLIQFKGLTIDLKTYTVTAGGQEISLTAKEFELLKFFASNPGQVFTKTQLF 184 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + ++N V HI +LRKK+ + + + +GY Sbjct: 185 RNAWS-DQYIEDDNTVMVHIRRLRKKIEPDPSDPQFIQTVWGIGYKF 230 >gi|315646972|ref|ZP_07900086.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] gi|315277624|gb|EFU40949.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] Length = 224 Score = 155 bits (391), Expect = 5e-36, Method: Composition-based stats. Identities = 45/223 (20%), Positives = 92/223 (41%), Gaps = 6/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD +++ +DG + + + S D+ ++ Sbjct: 4 ILVADDDPNIRELVCLFLRNDGFTTVEARDGKEALAVYGSTPVDLVVLDIM--MPIMDGW 61 Query: 62 ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L + + RA+ +PL+ ++ + F+ G DD + KP E+ RV A+ +R K Sbjct: 62 TLCKELRRANPDLPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVRALLKRYK 121 Query: 121 VSNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + + + E LP +E +L L G+ + Q+ I+G Sbjct: 122 IGSTQTVHFGNIILDRQTYKVTRGTESLTLPLKEFELLYKLAGTPGQVYTREQLIDQIWG 181 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + D A ++ V+ HI +LR++ F +++ R LGY ++ Sbjct: 182 I-DYAGDDRTVDVHIKRLRERFAETPDFR-IETVRGLGYRLEV 222 >gi|154250855|ref|YP_001411679.1| two component transcriptional regulator [Parvibaculum lavamentivorans DS-1] gi|154154805|gb|ABS62022.1| two component transcriptional regulator, winged helix family [Parvibaculum lavamentivorans DS-1] Length = 272 Score = 155 bits (391), Expect = 5e-36, Method: Composition-based stats. Identities = 55/225 (24%), Positives = 96/225 (42%), Gaps = 8/225 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + +G + E + L D+ ++ L G +E Sbjct: 47 MIVEDEEALLTLLQYNLDKEGYKVITAADGEEADLLIRETTPDLILLDWML--PGLSGIE 104 Query: 63 LPRII---RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L R + VP+I I+ + D G DD V KP E+LAR+ A+ RR+ Sbjct: 105 LCRRLRGRPETRNVPIIMITARGEETDRIRGLDIGADDYVTKPFSMTELLARIRAVMRRI 164 Query: 120 KVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + G I + L E R+L++L+ + G+ ++ Q+ + Sbjct: 165 RPALTEDLVTFGDIVIDRAAHRVRRGDREVHLGPTEYRLLDHLIQHPGRVFSREQLLDTV 224 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +G D VE V+ H+ +LRK L +K DP+ + R GYS+D Sbjct: 225 WG-SDVYVEARTVDVHVGRLRKALNDKGEKDPIRTVRSAGYSLDE 268 >gi|292492323|ref|YP_003527762.1| phosphate regulon transcriptional regulatory protein PhoB [Nitrosococcus halophilus Nc4] gi|291580918|gb|ADE15375.1| phosphate regulon transcriptional regulatory protein PhoB [Nitrosococcus halophilus Nc4] Length = 229 Score = 155 bits (391), Expect = 5e-36, Method: Composition-based stats. Identities = 44/224 (19%), Positives = 93/224 (41%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ + +G + + E + + D+ ++ L G + Sbjct: 5 ILVVDDETAIREMLGFVLTQEGYNYQAAADAEQAWQRLNESHPDLILLDWML--PGISGV 62 Query: 62 ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 +L R ++ PLI ++ + + + G DD + KP E++ARV A+ RR Sbjct: 63 DLARRLKREPNTRSLPLIMLTARDDEEDKVRGLNVGADDYITKPFSPTELIARVKAVLRR 122 Query: 119 LKVSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 +R ++ + G + E R+L + + + + ++ Q+ Sbjct: 123 SAPLLSREVVEVDGLKLDPSSHRLSIGGLPLEMGPTEFRLLHFFITHPERVYSRGQLIDH 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + VEE V+ HI +LRK L + + R +GY Sbjct: 183 VWG-DNVYVEERTVDVHIRRLRKSLEPSGHDRLIQTVRGVGYRF 225 >gi|123969361|ref|YP_001010219.1| two-component response regulator [Prochlorococcus marinus str. AS9601] gi|123199471|gb|ABM71112.1| two-component response regulator [Prochlorococcus marinus str. AS9601] Length = 248 Score = 155 bits (391), Expect = 5e-36, Method: Composition-based stats. Identities = 52/231 (22%), Positives = 96/231 (41%), Gaps = 16/231 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V + G + + E D+ ++ L Sbjct: 6 ILVVDDEPAVLKVLVTRLQLAGYQVYSATNGEEALESFHRDSPDLIVLDVML--PKMDGF 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R IRA S VP+I ++ ++ + D G DD ++KP +E+ AR+A I RR+ Sbjct: 64 AVCRRIRAESVVPIIFLTALEAISERVAGLDLGADDYLSKPFSPKELEARIATILRRMGP 123 Query: 122 S------------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 + + G + V ++ R G+ L E +LE L GK V Sbjct: 124 TVSVTETKEVPSGKGVMKFGSLVVDTNRRQVSRAGDRISLTYTEFSLLELLFDEPGKVVP 183 Query: 170 KTQIFSAIYG-LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218 + +I ++G A + VV+ ++++LR KL + + + + R +GY Sbjct: 184 RAEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 234 >gi|229188543|ref|ZP_04315583.1| hypothetical protein bcere0002_2390 [Bacillus cereus ATCC 10876] gi|228594937|gb|EEK52716.1| hypothetical protein bcere0002_2390 [Bacillus cereus ATCC 10876] Length = 237 Score = 155 bits (391), Expect = 5e-36, Method: Composition-based stats. Identities = 41/228 (17%), Positives = 91/228 (39%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD +++ + ++ + E L + + ++ ++ + Sbjct: 6 ILIADDDKEIRNLLKIYLERELYMVDTAINGEEALHLFNQNKYNLVILDLM--MPKIDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + +R + +P++ ++ + G DD + KP E++ARV A+ RR V Sbjct: 64 EVCKKLRDKTNIPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVIARVKALMRRFLV 123 Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + + E L +E +L++ +N G+ KTQ+ Sbjct: 124 LGSNNTVQEKTTLSFKGLTINLNTYTVHTNKEEISLTGKELELLKFFTSNPGQVFTKTQL 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 F ++ + ++N V HI KLRKK+ + + + +GY Sbjct: 184 FRNVWD-DNYIEDDNTVMVHIRKLRKKIEIDPSNPKFIQTIWGIGYKF 230 >gi|225378285|ref|ZP_03755506.1| hypothetical protein ROSEINA2194_03946 [Roseburia inulinivorans DSM 16841] gi|225209852|gb|EEG92206.1| hypothetical protein ROSEINA2194_03946 [Roseburia inulinivorans DSM 16841] Length = 230 Score = 155 bits (391), Expect = 5e-36, Method: Composition-based stats. Identities = 47/223 (21%), Positives = 96/223 (43%), Gaps = 10/223 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD L+ G DG+ ++ E + + D+ ++ L E Sbjct: 6 LVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEALKMATENHYDMILLDIML--PKMDGFE 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + IR S +P++ ++ + + G DD + KP + E+ AR+ AI RR S Sbjct: 64 VCQHIREFSDMPIVMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRTAGS 123 Query: 123 NNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + E + + R + + L +E +LE L+ N K ++ + + Sbjct: 124 QPKKEDSKVIEAGDLRLDCESRRLFILNKEVNLTAKEFDLLELLVNNPNKVYSRENLLNL 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218 ++G ++ + V+ H+ +LR+K+ N V +K +GY Sbjct: 184 VWG-YEYPGDVRTVDVHVRRLREKIEKNPSEPKYVHTKWGVGY 225 >gi|159904286|ref|YP_001551630.1| two-component response regulator [Prochlorococcus marinus str. MIT 9211] gi|159889462|gb|ABX09676.1| two-component response regulator [Prochlorococcus marinus str. MIT 9211] Length = 269 Score = 155 bits (391), Expect = 5e-36, Method: Composition-based stats. Identities = 55/232 (23%), Positives = 96/232 (41%), Gaps = 17/232 (7%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V + G + E L D+ ++ L Sbjct: 27 ILVVDDEPAVLKVLVTRLELAGYHVISAKDGEEALELFHRESPDLVVLDVML--PKLDGF 84 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 + R IR S VP+I +S ++ + D G DD ++KP +E+ AR+A I RR+ Sbjct: 85 AVCRRIRGESIVPIIFLSALEAISERVAGLDLGADDYLSKPFSPKELEARIATILRRMGP 144 Query: 120 -----------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 V + G + V ++ R GE L E +LE L + GK V Sbjct: 145 GASSVAEPREIPVGQGVMKLGDLVVDTNRRQVSRAGERIGLTYTEFSLLELLFRDPGKVV 204 Query: 169 AKTQIFSAIYG-LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218 + +I ++G A + VV+ ++++LR KL + + + + R +GY Sbjct: 205 PRAEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 256 >gi|33241229|ref|NP_876171.1| two-component response regulator [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33238759|gb|AAQ00824.1| Two-component response regulator [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 269 Score = 155 bits (391), Expect = 5e-36, Method: Composition-based stats. Identities = 55/238 (23%), Positives = 100/238 (42%), Gaps = 19/238 (7%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V + G + + E + D+ ++ L Sbjct: 28 ILVVDDEPAVLKVLVTRLELAGYKVVSASDGEEALDVFHREIPDLVVLDVML--PKLDGF 85 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R +RA S VP+I +S ++ + D G DD ++KP +E+ AR+A I RR+ Sbjct: 86 AVCRRLRAESIVPIIFLSALEAISERVAGLDLGADDYLSKPFSPKELEARIATILRRMGP 145 Query: 122 SNNRAETGPIR------------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 + AE I V ++ R GE L E +LE L + GK V Sbjct: 146 GASVAEPREIPAGQGVMKLGELVVDTNRRQVSRGGERIGLTYTEFSLLELLFRDPGKVVP 205 Query: 170 KTQIFSAIYG-LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY---SIDW 222 + +I ++G A + VV+ ++++LR KL + + + + R +GY ++ Sbjct: 206 RAEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGYSSQRLNE 263 >gi|325264640|ref|ZP_08131370.1| DNA-binding response regulator [Clostridium sp. D5] gi|324030302|gb|EGB91587.1| DNA-binding response regulator [Clostridium sp. D5] Length = 233 Score = 155 bits (391), Expect = 5e-36, Method: Composition-based stats. Identities = 43/230 (18%), Positives = 92/230 (40%), Gaps = 13/230 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + + + E + + ++ L G Sbjct: 7 ILIVDDDENIAELISLYLVKECFDTKIVYNGEDALSAYETYHPGLILLDLML--PGIDGY 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R IRA S P+I +S + + + G DD + KP +E++ARV A+ RR + Sbjct: 65 QVCREIRAKSSTPIIMLSAKGEVFDKVLGLELGADDYIMKPFDSKEMVARVRAVLRRYQP 124 Query: 122 ---------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 E + + G +P +E +L +L A+ + + Q Sbjct: 125 VKPEEPAEDKTKCVEYDGLTINLTNYSVVCDGHPVEMPPKELELLYFLAASPNQVFTREQ 184 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + I+G ++ + V+ HI +LR+K+++ + + +GY + Sbjct: 185 LLDQIWG-YEYIGDTRTVDVHIKRLREKIKDHPSWGL-STVWGIGYKFEV 232 >gi|197103973|ref|YP_002129350.1| phosphate regulon response regulator PhoB [Phenylobacterium zucineum HLK1] gi|196477393|gb|ACG76921.1| phosphate regulon response regulator PhoB [Phenylobacterium zucineum HLK1] Length = 230 Score = 155 bits (391), Expect = 5e-36, Method: Composition-based stats. Identities = 51/225 (22%), Positives = 89/225 (39%), Gaps = 4/225 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++++D + +G + E D+ ++ L G +V Sbjct: 6 ILIVEDEDSLATLLQYNLEKEGYEVAAAGDGEEALLQVQERLPDLIVLDWMLPKVSGIEV 65 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118 R VP+I ++ + D+G DD V KP E+ R R Sbjct: 66 CRRLRQRPESRNVPIIMLTARGEETDRIRGLDTGADDYVVKPFAMSELAARIRAVLRRLR 125 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++ +R G I + + G L E R+L++ M + G+ ++ Q+ A++ Sbjct: 126 PGLAEDRVRCGDIIIDRVAHRVKRNGAEVHLGPTEFRLLDHFMQHPGRVFSREQLLDAVW 185 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 G D VE V+ HI +LRK L DP+ + R GYS+D + Sbjct: 186 G-SDVYVEARTVDVHIGRLRKALNAADAGDPIRTVRSAGYSLDVD 229 >gi|317502263|ref|ZP_07960436.1| DNA-binding response regulator SrrA [Lachnospiraceae bacterium 8_1_57FAA] gi|331089008|ref|ZP_08337915.1| hypothetical protein HMPREF1025_01498 [Lachnospiraceae bacterium 3_1_46FAA] gi|316896378|gb|EFV18476.1| DNA-binding response regulator SrrA [Lachnospiraceae bacterium 8_1_57FAA] gi|330406460|gb|EGG85973.1| hypothetical protein HMPREF1025_01498 [Lachnospiraceae bacterium 3_1_46FAA] Length = 233 Score = 155 bits (391), Expect = 5e-36, Method: Composition-based stats. Identities = 44/229 (19%), Positives = 92/229 (40%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + + + E + ++ ++ L G Sbjct: 7 ILIVDDDENIAELISLYLTKECFDTKIVFNGEDALSTFETYEPNLILLDLML--PGIDGY 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R IRA S VP+I +S + + + G DD + KP +E++ARV A+ RR Sbjct: 65 QVCREIRAKSGVPIIMLSAKGEIFDKVLGLELGADDYILKPFDSKEMIARVRAVLRRYHP 124 Query: 122 ---------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 E + + G +P +E +L L ++ + + Q Sbjct: 125 IKNEPSQAEKPKCVEYEGLTINLTNYSVLCDGNTVEMPPKELELLYCLASSPNQVFTREQ 184 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + I+G ++ + V+ HI +LR+KL++ + + +GY + Sbjct: 185 LLDRIWG-YEYLGDTRTVDVHIKRLREKLKDHPQWKL-GTVWGIGYKFE 231 >gi|323490448|ref|ZP_08095655.1| alkaline phosphatase synthesis transcriptional regulatory protein [Planococcus donghaensis MPA1U2] gi|323395852|gb|EGA88691.1| alkaline phosphatase synthesis transcriptional regulatory protein [Planococcus donghaensis MPA1U2] Length = 235 Score = 155 bits (391), Expect = 5e-36, Method: Composition-based stats. Identities = 47/230 (20%), Positives = 93/230 (40%), Gaps = 12/230 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + G N + L S + + ++ L + Sbjct: 5 ILIIEDEHSIATLLSYNLVQAGFETMIANDGKQGYELALSEKPSLIVLDLML--PSMDGV 62 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ + +R P+I ++ + + G DD + KP RE++AR+ A+ RR Sbjct: 63 EVCKSLRQQKVNTPIIMLTAKGDEFDKVLGLELGADDYMTKPFSPREVVARIKAVLRRAS 122 Query: 121 VSNNRAETGPIRV-------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + + D + + E +E +L YLM N+ + + + Q+ Sbjct: 123 NVPTPQQDASQPISLGKLDVYPDRFEVFLNKEQLEFTPKEFELLVYLMENKNRVLTRDQL 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 SA++ +D A + +V+ HIS LR+K+ + + R LGY + Sbjct: 183 LSAVW-KYDFAGDTRIVDVHISHLREKIEENSRKPAFIKTIRGLGYKFEE 231 >gi|266622614|ref|ZP_06115549.1| DNA-binding response regulator YycF [Clostridium hathewayi DSM 13479] gi|288865657|gb|EFC97955.1| DNA-binding response regulator YycF [Clostridium hathewayi DSM 13479] Length = 234 Score = 155 bits (391), Expect = 5e-36, Method: Composition-based stats. Identities = 51/229 (22%), Positives = 92/229 (40%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD L+ G D + ++ E L DV ++ L Sbjct: 4 ILVVDDEKLIVKGIRFSLEQDNMEVDCAYDGEEAINLAKQKEYDVVLLDVML--PKFDGY 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IR S++P+I ++ + + + G DD + KP + E+ AR+ AI RR Sbjct: 62 EVCQAIREFSEMPIIMLTAKGNDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRNTK 121 Query: 122 SNNRAETGPIRV--------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 N R V D R + + L +E +LE L N K ++ Q+ Sbjct: 122 KNRRESRAGSNVVTSGDLKLDRDSRRVFIGEKEINLTAKEFDLLELLACNPNKVYSREQL 181 Query: 174 FSAIYGLFDEA-VEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + ++G + V+ H+ +LR+K+ V +K +GY Sbjct: 182 LTYVWGNKAMDSGDVRTVDVHVRRLREKIEPSPSDPKYVHTKWGVGYYF 230 >gi|229143070|ref|ZP_04271504.1| hypothetical protein bcere0012_2450 [Bacillus cereus BDRD-ST24] gi|296501093|ref|YP_003662793.1| two-component response regulator [Bacillus thuringiensis BMB171] gi|228640399|gb|EEK96795.1| hypothetical protein bcere0012_2450 [Bacillus cereus BDRD-ST24] gi|296322145|gb|ADH05073.1| two-component response regulator [Bacillus thuringiensis BMB171] Length = 237 Score = 155 bits (391), Expect = 5e-36, Method: Composition-based stats. Identities = 42/228 (18%), Positives = 90/228 (39%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD +++ + ++ + E L + ++ ++ + Sbjct: 6 ILIADDDKEIRNLLKIYLERELYMVDTAINGEEALHLFNQNNYNLVILDLM--MPKIDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + +R + VP++ ++ + G DD + KP E++ARV A+ RR V Sbjct: 64 EVCKKLRDKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVIARVKALMRRFLV 123 Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + + E L +E +L++ +N G+ KTQ+ Sbjct: 124 LGSNNTAQEKTTLSFKGLTINLNTYTVHTNKEEISLTGKELELLKFFTSNPGQVFTKTQL 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 F ++ + ++N V HI KLRKK+ + + + +GY Sbjct: 184 FRNVWD-DNYIEDDNTVMVHIRKLRKKIEIDPSNPKFIQTIWGIGYKF 230 >gi|299535466|ref|ZP_07048788.1| alkaline phosphatase synthesis transcriptional regulatory protein [Lysinibacillus fusiformis ZC1] gi|298729227|gb|EFI69780.1| alkaline phosphatase synthesis transcriptional regulatory protein [Lysinibacillus fusiformis ZC1] Length = 238 Score = 155 bits (391), Expect = 5e-36, Method: Composition-based stats. Identities = 51/233 (21%), Positives = 96/233 (41%), Gaps = 15/233 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + G +E + + ++ ++ L + Sbjct: 5 ILVIEDEFSIATLLKYNLEQAGYVVETAADGQEGLEKAIDLQPNLILLDLML--PKLDGM 62 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ + IR P+I ++ + + G DD + KP RE+LARV A+ RR Sbjct: 63 EVCKQIRQQRMNTPIIMLTAKDDEFDKVLGLELGADDYMTKPFSPREVLARVKAVLRRFT 122 Query: 121 V----------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 E G +RV+ + + +Q E +E +L YL+ N+ + + + Sbjct: 123 QNVVADDKDVAQEKMYEFGQLRVYPERFEVFLQDEALEFTPKEFELLIYLLENKNRVLTR 182 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDW 222 Q+ SA++ +D A + +V+ HIS LR K+ + + R LGY + Sbjct: 183 DQLLSAVW-KYDFAGDTRIVDVHISHLRDKIEENSRKPMFIKTIRGLGYKFEE 234 >gi|291535462|emb|CBL08574.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Roseburia intestinalis M50/1] Length = 234 Score = 155 bits (391), Expect = 5e-36, Method: Composition-based stats. Identities = 34/229 (14%), Positives = 84/229 (36%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + + N E ++ ++ L G Sbjct: 7 ILIVDDDNNIAELISLYLTKECFDTKIVNDGEEALKAFEQYSPNLILLDLML--PGIDGY 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARVA 113 ++ R +RA + VP+I +S + + + G DD + KP +E + Sbjct: 65 QVCREVRAKANVPIIMLSAKGEIFDKVLGLELGADDYIMKPFDSKELVARVKAVLRRYQP 124 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + V + +P +E +L +L ++ + + Q+ Sbjct: 125 VKVEEPAPELKCVKYPDLIVNLSNYSVIYKDNPIDMPPKELELLYFLASSPNQVFTREQL 184 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 I+G ++ + V+ H+ +LR+K+++ + + +GY + Sbjct: 185 LDHIWG-YEYIGDTRTVDVHVKRLREKIKDNDSWSL-STVWGIGYKFEV 231 >gi|108801265|ref|YP_641462.1| two component transcriptional regulator [Mycobacterium sp. MCS] gi|119870416|ref|YP_940368.1| two component transcriptional regulator [Mycobacterium sp. KMS] gi|126437246|ref|YP_001072937.1| two component transcriptional regulator [Mycobacterium sp. JLS] gi|123178190|sp|Q1B3X8|MPRA_MYCSS RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial persistence regulator A gi|160012472|sp|A3Q5L9|MPRA_MYCSJ RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial persistence regulator A gi|160012476|sp|A1UL70|MPRA_MYCSK RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial persistence regulator A gi|108771684|gb|ABG10406.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. MCS] gi|119696505|gb|ABL93578.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. KMS] gi|126237046|gb|ABO00447.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. JLS] Length = 230 Score = 155 bits (391), Expect = 5e-36, Method: Composition-based stats. Identities = 50/224 (22%), Positives = 93/224 (41%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V++ +G S+E L ++ R D ++ L Sbjct: 5 ILVVDDDRAVRESLRRSLSFNGYSVELAQDGVEALDLIANNRPDAVVLDVM--MPRLDGL 62 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +R+ P++ ++ S+ + D+G DD + KP E+LAR+ A+ RR Sbjct: 63 EVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTS 122 Query: 121 VSNNRAETGPIR----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + R+ L R E +LE L+AN + + +++I Sbjct: 123 PDEGPDSPALTFLDLTLDPVTREVTRGSRQISLTRTEFALLEMLIANPRRVLTRSRILEE 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G FD N +E +I LR+K + + R +GY + Sbjct: 183 VWG-FDFPTSGNALEVYIGYLRRKTEASGEPRLIHTVRGVGYVL 225 >gi|225181176|ref|ZP_03734622.1| two component transcriptional regulator, winged helix family [Dethiobacter alkaliphilus AHT 1] gi|225168145|gb|EEG76950.1| two component transcriptional regulator, winged helix family [Dethiobacter alkaliphilus AHT 1] Length = 232 Score = 155 bits (391), Expect = 5e-36, Method: Composition-based stats. Identities = 47/222 (21%), Positives = 90/222 (40%), Gaps = 8/222 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + +G ++ E L + D+ ++ L + Sbjct: 6 ILVVDDEKPIAEILRYNLVQEGYAVVVAYDGEEATRLMQTESPDLVLLDIML--PKKDGF 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117 + R IR S VP+I ++ + T+ + G DD V KP R + A++ Sbjct: 64 AVCRDIRRVSNVPIIMLTAKDTELDTVLGLELGADDYVTKPFSAREVLARVKAQLRRTQA 123 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 ++V + + G L RE +L YLM N G +++ ++ S + Sbjct: 124 AKGPGGEFLICDDLQVDTGRMEIRKNGVDIDLTYREYLLLVYLMRNAGYVISREKLLSEV 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGY 218 +G +D +E V+ I +LR+K+ + +KR GY Sbjct: 184 WG-YDFYGDERTVDVTIRRLREKIEENPSQPRYIRTKRGAGY 224 >gi|33591409|ref|NP_879053.1| phosphate regulon transcriptional regulatory protein [Bordetella pertussis Tohama I] gi|33603443|ref|NP_891003.1| phosphate regulon transcriptional regulatory protein [Bordetella bronchiseptica RB50] gi|33571051|emb|CAE40539.1| phosphate regulon transcriptional regulatory protein [Bordetella pertussis Tohama I] gi|33577567|emb|CAE34832.1| phosphate regulon transcriptional regulatory protein [Bordetella bronchiseptica RB50] gi|332380810|gb|AEE65657.1| phosphate regulon transcriptional regulatory protein [Bordetella pertussis CS] Length = 232 Score = 155 bits (391), Expect = 5e-36, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 92/224 (41%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D +++ G + E + L + D+ ++ L G L Sbjct: 5 ILVVEDEPAIQELIAVNLSFAGHKVLRAFDAEQAQTLIRAELPDLILLDWML--PGASGL 62 Query: 62 ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 L R +R VP+I ++ + Q +D ++G DD + KP +E++AR+ A+ RR Sbjct: 63 SLARKLRDEERTRAVPVIMLTAKGAEQDKVDGLEAGADDYITKPFSPKELMARIKAVLRR 122 Query: 119 LKVSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 ++ + + E R+L + M + + +++Q+ Sbjct: 123 RAPQLTDDIIDVAGLKLDPVTHRLSGHSQSLSIGPTEFRLLHFFMTHPERVFSRSQLLDQ 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G VEE V+ HI +LRK L V++ R GY Sbjct: 183 VWGDH-VFVEERTVDVHIRRLRKALEPSGHDAHVETVRGSGYRF 225 >gi|239622508|ref|ZP_04665539.1| response regulator [Bifidobacterium longum subsp. infantis CCUG 52486] gi|312133342|ref|YP_004000681.1| response regulator of two-component system [Bifidobacterium longum subsp. longum BBMN68] gi|322688478|ref|YP_004208212.1| two-component response regulator [Bifidobacterium longum subsp. infantis 157F] gi|322690488|ref|YP_004220058.1| two-component response regulator [Bifidobacterium longum subsp. longum JCM 1217] gi|239514505|gb|EEQ54372.1| response regulator [Bifidobacterium longum subsp. infantis CCUG 52486] gi|291517414|emb|CBK71030.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bifidobacterium longum subsp. longum F8] gi|311772562|gb|ADQ02050.1| Response Regulator of two-component system [Bifidobacterium longum subsp. longum BBMN68] gi|320455344|dbj|BAJ65966.1| two-component response regulator [Bifidobacterium longum subsp. longum JCM 1217] gi|320459814|dbj|BAJ70434.1| two-component response regulator [Bifidobacterium longum subsp. infantis 157F] Length = 234 Score = 155 bits (391), Expect = 5e-36, Method: Composition-based stats. Identities = 56/230 (24%), Positives = 101/230 (43%), Gaps = 13/230 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++ + +G + + E L + D+ ++ L G Sbjct: 4 ILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGGIDLVLLDLML--PGIDGT 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 L R IR S+VP+I ++ + + + G DD V KP RE+LAR+ A+ RR + Sbjct: 62 ALCRRIREQSRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVMRRNQA 121 Query: 121 --------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + G I + V+GE P +E +LEYLM N+G+ + + Q Sbjct: 122 TAQASGTVDDDIPLVCGDIAMQVGQHQVTVRGETVFFPLKEFELLEYLMQNKGRVMTRHQ 181 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221 + I+G D + ++ H+ ++R K+ + + R LGY ID Sbjct: 182 LIDRIWG-SDYVGDTKTLDVHVKRVRSKIEEDPAHPKYLTTVRGLGYKID 230 >gi|229055112|ref|ZP_04195541.1| hypothetical protein bcere0026_2470 [Bacillus cereus AH603] gi|228721234|gb|EEL72761.1| hypothetical protein bcere0026_2470 [Bacillus cereus AH603] Length = 237 Score = 155 bits (391), Expect = 5e-36, Method: Composition-based stats. Identities = 42/228 (18%), Positives = 89/228 (39%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD ++D + ++ + E L + ++ ++ + Sbjct: 6 ILIADDDKEIRDLLKRYLERELYMVDTAVNGEEALCLFNQNNYNLVILDLM--MPKVDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R + +P++ ++ + G DD + KP E++ARV A+ RR V Sbjct: 64 EVCRKLRDTTNIPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKALMRRFLV 123 Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + G+ L +E +L++ +N + KTQ+ Sbjct: 124 LGSNTNVQEKTTLTFKGLTIDFKKYTVHTNGKEINLTGKELELLKFFASNPEQVFTKTQL 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 F ++ + ++N V HI KLRKK+ + + + +GY Sbjct: 184 FRNVWD-DNYIEDDNTVMVHIRKLRKKIEIDSSNPKFIQTVWGIGYKF 230 >gi|229187114|ref|ZP_04314262.1| Two component transcriptional regulator, winged helix [Bacillus cereus BGSC 6E1] gi|228596355|gb|EEK54027.1| Two component transcriptional regulator, winged helix [Bacillus cereus BGSC 6E1] Length = 248 Score = 155 bits (391), Expect = 5e-36, Method: Composition-based stats. Identities = 53/229 (23%), Positives = 85/229 (37%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD A + D +G + E + + D+ ++ Sbjct: 22 ILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIM--MPKMDGY 79 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IRA +P+I +S S + G DD + KP E++ARV A RR Sbjct: 80 EVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 139 Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 N + + R +V GE L +E IL L ++ K I Sbjct: 140 LNQPKVAESKSALEVGGVVIDPERRTVDVYGEQIELTPKEFDILYLLASHPKKVYNVENI 199 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221 F ++ N V HI LRKKL +K + + +GY+ + Sbjct: 200 FQQVWADDYFEGG-NTVMVHIRTLRKKLGEDKRKNKLIKTVWGVGYTFN 247 >gi|254461523|ref|ZP_05074939.1| phosphate regulon transcriptional regulatory protein PhoB [Rhodobacterales bacterium HTCC2083] gi|206678112|gb|EDZ42599.1| phosphate regulon transcriptional regulatory protein PhoB [Rhodobacteraceae bacterium HTCC2083] Length = 227 Score = 155 bits (391), Expect = 5e-36, Method: Composition-based stats. Identities = 50/222 (22%), Positives = 93/222 (41%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D A ++ +G + S + L D+ ++ L G +V Sbjct: 6 ILVVEDEAAQREVLSYNLEAEGYRVLQGESGDEGLLLARENVPDLIVLDWMLPEMSGIEV 65 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + +P+I +S + ++G DD V KP +E++ARV A RR + Sbjct: 66 CRQVKSDTTTKAIPIIMLSARSEDVDKVRGLETGADDYVAKPYSVKELMARVKAQLRRTR 125 Query: 121 VSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + + I + + G L E R+L LM G+ + Q+ ++ Sbjct: 126 PAALGAQLDFEDIVLNGETHKVTRAGVELKLGPTEYRLLSQLMEKPGRVWPREQLLDHVW 185 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G D V+ V+ H+ +LRK L + G DP+ + R GY+ Sbjct: 186 GR-DAFVDTRTVDVHVGRLRKALTAEGGSDPIRTIRGTGYAF 226 >gi|134299753|ref|YP_001113249.1| two component transcriptional regulator [Desulfotomaculum reducens MI-1] gi|134052453|gb|ABO50424.1| two component transcriptional regulator, winged helix family [Desulfotomaculum reducens MI-1] Length = 230 Score = 155 bits (391), Expect = 5e-36, Method: Composition-based stats. Identities = 48/228 (21%), Positives = 98/228 (42%), Gaps = 10/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ +G ++ ++ S+ D+ ++ L G L Sbjct: 4 LLIVDDEEKIRNLIKVYLVKEGFEVDELDNGNRVVDSIKSSHFDMVVLDIMLPGP--DGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L + IR S +P+I ++ + + G DD + KP RE++AR+ AI RR+ Sbjct: 62 SLCKEIRKISNIPIIMLTAKGDEIDRIIGLEVGADDYIVKPFSPRELVARINAILRRVAA 121 Query: 122 SNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 E + D R EV+G L +E +L ++ G+ ++ + Sbjct: 122 QPIIQEDRTAILSFSELTINPDNRTVEVRGSEIALTPKEFDLLYFMAKTPGRAFSRENLL 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 ++G +D + V++HI++LR KL + + + +GY + Sbjct: 182 ENVWG-YDFYGDLRTVDTHINRLRDKLNMEGTKQAITTVWGVGYKFEV 228 >gi|304407578|ref|ZP_07389230.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] gi|304343529|gb|EFM09371.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] Length = 233 Score = 155 bits (391), Expect = 5e-36, Method: Composition-based stats. Identities = 48/229 (20%), Positives = 91/229 (39%), Gaps = 10/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 +++DD + + ++G S E + + D+ ++ + G ++ Sbjct: 5 ILIVDDDRQIAELVDIYLRNEGYSTAIAGDGEEALRMFEAQPFDLIVLDVMMPRMDGLEL 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 R ++ VP++ +S + +G DD + KP + E+ ARV ++ RR Sbjct: 65 CRRLRRDKSAETVPILMVSAKAEDMDKIMGLMTGADDYMTKPFNPLELTARVKSLLRRSY 124 Query: 121 VSNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + A++ ++ E G + L E IL L + G+ + + Sbjct: 125 QYSKPAKSEDDGSLFIGGLKMDRTTHKVEADGRLLHLTSTEFGILYLLASQPGRVFSAEE 184 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 IF ++ N V HISKLR KL + G + + +GY ID Sbjct: 185 IFQHVWREKYFE-SNNTVMVHISKLRDKLEQETGDKLIATVWGVGYKID 232 >gi|159027454|emb|CAO89419.1| ycf27 [Microcystis aeruginosa PCC 7806] Length = 246 Score = 155 bits (391), Expect = 5e-36, Method: Composition-based stats. Identities = 46/228 (20%), Positives = 91/228 (39%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++ G + E +A D+ ++ Sbjct: 12 ILVVDDEASIRRILETRLSMIGYEVVTAADGEEALETFRTAEPDLVVLDVM--MPKLDGY 69 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAA 114 + + +R S +P+I ++ + + + G DD V KP +E+ RV Sbjct: 70 GVCQELRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVEK 129 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 S+ G I++ ++ R E L E +LE L++ G+ ++++I Sbjct: 130 NGAPGIPSSGVIHIGSIKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEAFSRSEIL 189 Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 ++G + V+ VV+ HIS+LR KL + + + + R GY Sbjct: 190 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLF 237 >gi|159897333|ref|YP_001543580.1| two component transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159890372|gb|ABX03452.1| two component transcriptional regulator, winged helix family [Herpetosiphon aurantiacus ATCC 23779] Length = 236 Score = 155 bits (391), Expect = 5e-36, Method: Composition-based stats. Identities = 41/226 (18%), Positives = 88/226 (38%), Gaps = 9/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D AL+ D +G ++ + L + + D+ ++ L Sbjct: 4 ILLVEDEALLADTLRYNLEREGYTVLSASDGVTGLDLARAEQPDLLILDVML--PKLDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-----HREILARVAAIY 116 + RI+R + +P++ ++ + + G DD V KP R Sbjct: 62 SVCRILRRETNIPIMMLTARQDEVDRIAGLELGADDYVIKPFSLGELLARVRAILRRTDR 121 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + V ++V + R L ++E +L LM NRG +++ + Sbjct: 122 QPTGVERELLTAANLKVDTGSRRVFRDNNEITLAQKEFDLLVCLMRNRGMALSRDLLLER 181 Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 ++G +D + V+ H+ LR+K+ + + + R +GY + Sbjct: 182 VWG-YDFPGDSRTVDVHVRWLREKVEVDPSNPIYIQTVRGIGYRFN 226 >gi|143328|gb|AAA22661.1| phoP protein (put.); putative [Bacillus subtilis] Length = 241 Score = 155 bits (391), Expect = 5e-36, Method: Composition-based stats. Identities = 47/235 (20%), Positives = 95/235 (40%), Gaps = 17/235 (7%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + G + + E + + D+ ++ L + Sbjct: 5 ILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVML--PKLDGI 62 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ + +R P++ ++ + + G DD + KP RE+ ARV AI RR + Sbjct: 63 EVCKQLRQQKLMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRRSE 122 Query: 121 VSNNRAETGPIRV-----------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 + +E + D + + L +E +L YL ++G+ + Sbjct: 123 IRAPSSEMKNDEMEGQIVIGDLKILPDHYEAIFKESQLELTPKEFELLLYLGRHKGRVLT 182 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLR-KKLRNKLGFD-PVDSKRFLGYSIDW 222 + + SA++ +D A + +V+ HIS LR K+ N + + R LGY ++ Sbjct: 183 RDLLLSAVW-NYDFAGDTRIVDVHISHLRPTKIENNTKKPIYIKTIRGLGYKLEE 236 >gi|218232857|ref|YP_002365106.1| DNA-binding response regulator [Bacillus cereus B4264] gi|229148674|ref|ZP_04276925.1| hypothetical protein bcere0011_2470 [Bacillus cereus m1550] gi|218160814|gb|ACK60806.1| DNA-binding response regulator [Bacillus cereus B4264] gi|228634796|gb|EEK91374.1| hypothetical protein bcere0011_2470 [Bacillus cereus m1550] Length = 237 Score = 155 bits (391), Expect = 5e-36, Method: Composition-based stats. Identities = 41/228 (17%), Positives = 90/228 (39%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD +++ + ++ + E L + ++ ++ + Sbjct: 6 ILIADDDKEIRNLLKIYLERELYMVDTAINGEEALHLFNQNNYNLVILDLM--MPKIDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + +R + +P++ ++ + G DD + KP E++ARV A+ RR V Sbjct: 64 EVCKKLRDKTNIPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVIARVKALMRRFLV 123 Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + + E L +E +L++ +N G+ KTQ+ Sbjct: 124 LGSNNTAQEKTTLSFKGLTINLNTYTVHTNKEEISLTGKELELLKFFTSNPGQVFTKTQL 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 F ++ + ++N V HI KLRKK+ + + + +GY Sbjct: 184 FRNVWD-DNYIEDDNTVMVHIRKLRKKIEIDPSNPKFIQTIWGIGYKF 230 >gi|158452067|gb|ABW39375.1| PhoP [Bacillus subtilis] Length = 239 Score = 155 bits (391), Expect = 5e-36, Method: Composition-based stats. Identities = 48/234 (20%), Positives = 96/234 (41%), Gaps = 17/234 (7%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V G + + E + + D+ ++ L + Sbjct: 5 ILVVDDEESV-TLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVML--PKLDGI 61 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ + +R P++ ++ + + G DD + KP RE+ ARV AI RR + Sbjct: 62 EVCKQLRQQKLMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRRSE 121 Query: 121 VSNNRAETGPIRV-----------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 ++ +E + D + + L +E +L YL ++G+ + Sbjct: 122 MAAPSSEMKNDEMEGQIVIGDLKILPDHYEAYFKESQLELTPKEFELLLYLGRHKGRVLT 181 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDW 222 + + SA++ +D A + +V+ HIS LR K+ N + + R LGY ++ Sbjct: 182 RDLLLSAVW-NYDFAGDTRIVDVHISHLRDKIENNTKKPIYIKTIRGLGYKLEE 234 >gi|219847194|ref|YP_002461627.1| winged helix family two component transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219541453|gb|ACL23191.1| two component transcriptional regulator, winged helix family [Chloroflexus aggregans DSM 9485] Length = 235 Score = 155 bits (391), Expect = 5e-36, Method: Composition-based stats. Identities = 52/227 (22%), Positives = 94/227 (41%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D + ++G + L S + D+ ++ L G + Sbjct: 6 ILVVDDEQPIVDLVSSYLINEGFIVHRAFDGPSALALARSVKPDLVILDIML--PGLDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R + + V ++ ++ L G DD + KP RE++ARV AI RR + Sbjct: 64 EVCRQLHRETTVYVLMLTARADEIDKLIGLSVGADDYLTKPFSPRELVARVKAILRRNRA 123 Query: 122 SNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + + R+ E G L RE +L L + G+ + ++ Sbjct: 124 ARVLDVHQRPVLQFAGLLIDPERREVERNGIRVDLTPREFDLLYTLASYPGRVFTREELL 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220 ++G D A + VV+ HI LR+KL + G V + R +GY Sbjct: 184 QRVWG-PDFAGIDRVVDVHIGTLRRKLDDDQHGTPLVQTVRGVGYKF 229 >gi|320095862|ref|ZP_08027495.1| DNA-binding response regulator [Actinomyces sp. oral taxon 178 str. F0338] gi|319977208|gb|EFW08918.1| DNA-binding response regulator [Actinomyces sp. oral taxon 178 str. F0338] Length = 226 Score = 155 bits (391), Expect = 6e-36, Method: Composition-based stats. Identities = 42/220 (19%), Positives = 86/220 (39%), Gaps = 5/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + +G ++ D+ ++ L G Sbjct: 5 ILVVDDDVALAEMIGIVLEGEGYTVSTCPDGAKAVAAFQEHHPDLVLLDVML--PGMDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ +RA S VP++ ++ + ++G DD V KP RE++ARV A R + Sbjct: 63 EVCAALRAESNVPIVMLTARSDTADVVTGLEAGADDYVPKPFKPRELVARVRARLRGRED 122 Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + G + L E +L L K ++ ++ ++G Sbjct: 123 AGEERIALADLEIDVPGHAVRRGDRLIALTPLEFDLLATLARTPSKVFSREELLEQVWG- 181 Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219 + A + +V H+ +LR K+ + + V + R +GY Sbjct: 182 YRHAADTRLVNVHVQRLRSKIERDPEKPEIVVTVRGVGYR 221 >gi|302336523|ref|YP_003801730.1| two component transcriptional regulator, winged helix family [Olsenella uli DSM 7084] gi|301320363|gb|ADK68850.1| two component transcriptional regulator, winged helix family [Olsenella uli DSM 7084] Length = 241 Score = 155 bits (391), Expect = 6e-36, Method: Composition-based stats. Identities = 45/225 (20%), Positives = 89/225 (39%), Gaps = 8/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D ++D A +G + G + D+ ++ L Sbjct: 8 ILLVEDEKAIRDAVAAYLEREGYVVRGVGDGQSALEEFEKHSFDLIVLDLML--PKLSGE 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYR 117 + R +R S VP+I ++ ++ + + G DD V KP RE++ARV + Sbjct: 66 RVCRAVRETSSVPIIMLTAKGEVEDRIIGLELGADDYVIKPFSPRELVARVRALLRRAHA 125 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + G + + G V+G L E ++L L G+ + ++ + Sbjct: 126 EAEPQLEVLDFGDLVIDISGHKVMVEGSEVDLTASEFKLLTTLARYPGRVYTRMELVEKV 185 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 G +D E ++SH+ LR KL + + + +GY + Sbjct: 186 LG-YDFEGYERTIDSHVKNLRAKLGDDPRNPRWLYTVHGVGYRFE 229 >gi|158341219|ref|YP_001522417.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] gi|158311460|gb|ABW33071.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] Length = 247 Score = 155 bits (391), Expect = 6e-36, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 92/228 (40%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ G + + D+ ++ Sbjct: 15 ILVVDDEGPIRRILDTRLSMMGYHVFTAADGVEALEIFDRQHPDLIVLDVM--MPRLDGY 72 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R IR S+VP+I ++ + + + G DD + KP +E+ +RV I RR+ Sbjct: 73 GVCRAIRKTSRVPIIMLTALSEVGDRITGLEMGADDYMVKPFSPKELESRVRCIIRRMGS 132 Query: 122 SNNRAETGPI-------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + ++ R E L E +LE L + G V++ ++ Sbjct: 133 LKPFNYRVTGVLNIGSLHIDTNKRKVFRGQERIILTHMEFSLLELLASTPGAVVSRQELL 192 Query: 175 SAIYGLFD-EAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220 ++G + V+ VV+ H+S+LR KL+ +G + + + R +GY++ Sbjct: 193 EKVWGYSNGSIVDSRVVDVHVSRLRNKLKANQVGTELIHTIRGVGYTL 240 >gi|319653627|ref|ZP_08007726.1| hypothetical protein HMPREF1013_04343 [Bacillus sp. 2_A_57_CT2] gi|317394826|gb|EFV75565.1| hypothetical protein HMPREF1013_04343 [Bacillus sp. 2_A_57_CT2] Length = 229 Score = 155 bits (391), Expect = 6e-36, Method: Composition-based stats. Identities = 38/227 (16%), Positives = 87/227 (38%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + + + + + + + + ++ L Sbjct: 4 ILIIEDELNIAELERDYLELNHYEADIAATGQEGLERLKQSSYRLVLLDLML--PDMDGY 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 E+ R IR S++P+I ++ + G DD + KP + +++ARV A R Sbjct: 62 EICRQIREISEIPIIMVTAKNEEIDMIRGLGRGADDYIAKPFNPNQLIARVKAHIARFDR 121 Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + + R V + L +E +L ++ ++ + +K + Sbjct: 122 LVSRGQNKEEDMRIRGLHIQPVTRKVFVNSQEKVLTAKEFDLLLFMASSPNQVFSKEHLL 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++G FD + V HI +LR+K+ + D +++ +GY Sbjct: 182 EQVWG-FDFYGDVTTVTVHIRRLREKIEKDPSDPDYIETVWGVGYRF 227 >gi|295395813|ref|ZP_06806001.1| response regulator [Brevibacterium mcbrellneri ATCC 49030] gi|294971348|gb|EFG47235.1| response regulator [Brevibacterium mcbrellneri ATCC 49030] Length = 226 Score = 155 bits (391), Expect = 6e-36, Method: Composition-based stats. Identities = 50/220 (22%), Positives = 93/220 (42%), Gaps = 5/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + +G + + S R D+ ++ L G+ L Sbjct: 5 ILVVDDDTALAEMIGIVLKSEGFEPHFCATGDGAVEAFRSVRPDLILLDLML--PGKDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR S VP++ ++ + +SG DD V KP +E++ARV A R + Sbjct: 63 EVCREIREESGVPIVMLTAKSDTMDVVKGLESGADDYVPKPFKPKELVARVRARLRMSEP 122 Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 S + G + + G E G+ L E +L L + ++ + ++G Sbjct: 123 SAPEILKVGDVSIDVAGHTVEKAGKPVSLTPLEFELLVALARKPWQVFSRETLLEEVWG- 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219 + A + +V H+ +LR K+ D V + R +GY Sbjct: 182 YRHAADTRLVNVHVQRLRSKIEKDPEKPDIVVTVRGVGYK 221 >gi|239904903|ref|YP_002951641.1| OmpR family two-component response regulator [Desulfovibrio magneticus RS-1] gi|239794766|dbj|BAH73755.1| OmpR family two-component response regulator [Desulfovibrio magneticus RS-1] Length = 227 Score = 155 bits (391), Expect = 6e-36, Method: Composition-based stats. Identities = 36/225 (16%), Positives = 88/225 (39%), Gaps = 11/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G + E ++ L G Sbjct: 6 ILIVEDDEDIVELLAFNLQSAGFAAETARDGYEGLAKARRNPPAAVILDLML--PGLDGF 63 Query: 62 ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 E+ + ++ + P+I ++ + + G DD V KP RE++ R+ ++ +R Sbjct: 64 EVCKELKRDPKTASAPIIMLTARGEEVDRIVGLELGADDYVVKPFSPRELVLRLRSVLKR 123 Query: 119 LKVSNNRAETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + V + G L E ++L L + G+ + + ++ + Sbjct: 124 HAPEPEKRQVLARDGLSVDMAAHRVSLDGAEVALTATEFKLLAELFQSAGRVLTRDRLLN 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +++G ++ V++H+ +LR+KL + D +++ R +GY Sbjct: 184 SVWG-YEFEGYARTVDTHVRRLRQKLGHF--ADMIETVRGVGYRF 225 >gi|284051060|ref|ZP_06381270.1| two component transcriptional regulator [Arthrospira platensis str. Paraca] Length = 236 Score = 154 bits (390), Expect = 6e-36, Method: Composition-based stats. Identities = 41/225 (18%), Positives = 89/225 (39%), Gaps = 8/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ +E E L + D+ ++ L Sbjct: 6 ILVVDDDPAIRNLISRYLTQQNYEVESAKDGETALQLFDAFNPDLVILDVNL--PDTTGF 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L + +++ ++V ++ ++ + FD G DD + KP E+ ARV AI +R + Sbjct: 64 ALCQEMQSRTRVFVLLLTSLTGEADKIKGFDLGADDYITKPFGLAELGARVRAILKRQRS 123 Query: 122 SNNRAETGPIR----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + R+ ++ L E +L L G+ ++++ + Sbjct: 124 VEETEMRSLTYGDLVIDPVRREVYIRDRQISLSALEFDLLYCLAKKPGRAWRRSELLQEV 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221 + ++ E+ VV+ HI ++RKK+ + + R +GY D Sbjct: 184 WD-YEYEGEQRVVDVHIGQIRKKIEPDTDKPVLIKTIRGVGYMFD 227 >gi|302535811|ref|ZP_07288153.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. C] gi|302444706|gb|EFL16522.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. C] Length = 244 Score = 154 bits (390), Expect = 6e-36, Method: Composition-based stats. Identities = 48/229 (20%), Positives = 91/229 (39%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V++ +G + ++ D+ ++ L Sbjct: 11 ILVVDDEPAVREALRRSLAFEGYEVRTAVDGLDALDQAAAYAPDLIVLDI--QMPRMDGL 68 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 R +RA S P++ ++ ++ + D+G DD + KP E+ ARV A+ RR Sbjct: 69 TAARRLRASGSVTPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARVRALLRRSS 128 Query: 121 VSNNRAETGPI---------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + A P R+ R+ G L R E +LE +A+ + + + Sbjct: 129 YAAPAAGPEPAGDALAFGDLRMDLATREVTRGGRPVELTRTEFTLLEMFLAHPRQVLTRE 188 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 QI ++G FD N ++ ++ LR+K V + R +GY + Sbjct: 189 QILKTVWG-FDFEPSSNSLDVYVMYLRRKTEAAGEPRLVHTVRGVGYVL 236 >gi|228955130|ref|ZP_04117144.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228804541|gb|EEM51146.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 232 Score = 154 bits (390), Expect = 6e-36, Method: Composition-based stats. Identities = 54/229 (23%), Positives = 86/229 (37%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A + D +G + E + + D+ ++ Sbjct: 6 ILIVDDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIETQPIDLVVLDIM--MPKMDGY 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IRA +P+I +S S + G DD + KP E++ARV A RR Sbjct: 64 EVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 123 Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 N G + + R V GE L +E IL L ++ K I Sbjct: 124 LNQPKVAGNKSALEVGGVIIDPEQRTVNVYGEQIELTPKEFDILYLLASHPKKVYNVENI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221 F ++ N V HI LRKKL +K + + +GY+ + Sbjct: 184 FQQVWADDYYEGG-NTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTFN 231 >gi|325289942|ref|YP_004266123.1| two component transcriptional regulator, winged helix family [Syntrophobotulus glycolicus DSM 8271] gi|324965343|gb|ADY56122.1| two component transcriptional regulator, winged helix family [Syntrophobotulus glycolicus DSM 8271] Length = 232 Score = 154 bits (390), Expect = 6e-36, Method: Composition-based stats. Identities = 39/223 (17%), Positives = 84/223 (37%), Gaps = 8/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++ G + S E D+ ++ L G Sbjct: 8 ILVVEDEESIRRFITLNLNAAGYLVSEAVSGEEALDKLKMLDPDIVVLDIML--PGIDGF 65 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117 E+ + I A + +I ++ + + G DD + KP + E+ AR+ Sbjct: 66 EVCQHICATMPETRVIMLTARGQDTDKILGLELGADDYIVKPFNPIELTARIKAVLRRRN 125 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 K + G + + L E +L++ M N+GK + + +I +A+ Sbjct: 126 GPKETKQVLNCGKLCLDITANKLFKDELEIELTPNEFALLKFFMENQGKALKRYEILNAV 185 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219 +G + + ++ HI +LR+K+ + D + + GY Sbjct: 186 WGE-NYFGDTKTLDVHIRRLREKIEDHPSYPDYIKTVWGSGYR 227 >gi|229175570|ref|ZP_04303080.1| Two component transcriptional regulator, winged helix [Bacillus cereus MM3] gi|228607966|gb|EEK65278.1| Two component transcriptional regulator, winged helix [Bacillus cereus MM3] Length = 232 Score = 154 bits (390), Expect = 6e-36, Method: Composition-based stats. Identities = 53/229 (23%), Positives = 85/229 (37%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A + D +G + E + + D+ ++ Sbjct: 6 ILIVDDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIM--MPKMDGY 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IRA +P+I +S S + G DD + KP E++ARV A RR Sbjct: 64 EVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 123 Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 N + + R V GE L +E IL L ++ K I Sbjct: 124 LNQPKVAENKSALEVGGVVIDPERRTVNVYGEQVELTPKEFDILYLLASHPKKVYNVENI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221 F ++ N V HI LRKKL +K + + +GY+ + Sbjct: 184 FQQVWADDYYEGG-NTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTFN 231 >gi|254471949|ref|ZP_05085350.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudovibrio sp. JE062] gi|211959151|gb|EEA94350.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudovibrio sp. JE062] Length = 231 Score = 154 bits (390), Expect = 6e-36, Method: Composition-based stats. Identities = 56/225 (24%), Positives = 107/225 (47%), Gaps = 8/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G +++ + E L ++ D+ ++ L G + Sbjct: 4 ILIVEDEEPLSLLLRYNLEAEGYNVDVCARGDEAELLLQESQPDLLLLDWML--PGLSGI 61 Query: 62 ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 EL R +RA S ++P+I ++ + +G DD V KP E++ARV AI+RR Sbjct: 62 ELCRRLRARSETERMPIIMLTARGEESERIRGLATGADDYVVKPFSIPELMARVRAIFRR 121 Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 +V + ++G I + + G L E R+LE+LM+ G+ ++ Q+ Sbjct: 122 ALPEVVSTMLKSGDIELDRETHRVRRTGREIHLGPTEFRLLEFLMSAPGRVYSREQLLDG 181 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G D V+E V+ H+ +LRK + DP+ + R GY+ + Sbjct: 182 VWG-HDVYVDERTVDVHVGRLRKAINKGRMKDPIRTVRGAGYAFN 225 >gi|18311470|ref|NP_563404.1| DNA-binding response regulator [Clostridium perfringens str. 13] gi|18146154|dbj|BAB82194.1| two-component response regulator [Clostridium perfringens str. 13] Length = 228 Score = 154 bits (390), Expect = 6e-36, Method: Composition-based stats. Identities = 44/224 (19%), Positives = 92/224 (41%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + G +++ + + + + ++ ++ L G + Sbjct: 8 ILIVDDDENICEVIKMYLETTGYNVKVAHDGKAAKEEFVNFSPNLVVLDMML--PGIDGM 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118 E+ + IR S VP+I ++ + + G DD V KP +E + V Y Sbjct: 66 EVLKWIRKDSNVPVIMLTAKGETFDKVLALEIGADDYVVKPFEPKELLARVKAVMRRYSG 125 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + N + + ++ GE P +E +L YL +N+ K + Q+ ++ Sbjct: 126 EEPDNVVLNFPGLTIDANSYKVIYNGEEVKTPPKEFELLHYLASNKNKVFTRDQLLCEVW 185 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 G +D V+ HI +LR+KL N +++ +GY + Sbjct: 186 G-YDYPGYSRTVDVHIKRLREKL-NGGEDWQLETVWGVGYKFEV 227 >gi|218441116|ref|YP_002379445.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] gi|218173844|gb|ACK72577.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] Length = 247 Score = 154 bits (390), Expect = 6e-36, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 89/228 (39%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++ G + E D+ ++ Sbjct: 12 ILVVDDEASIRRILETRLSMIGYDVVTAADGEEALETFRQTSPDLVVLDVM--MPKLDGY 69 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAA 114 + + +R S +P+I ++ + + + G DD V KP +E+ RV Sbjct: 70 GVCQELRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVEK 129 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 S+ G I++ ++ R E L E +LE L++ G+ ++++I Sbjct: 130 NGAPGIPSSGVIHVGSIKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEIL 189 Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 ++G + V+ VV+ HIS+LR KL + + + + R GY Sbjct: 190 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLF 237 >gi|218439789|ref|YP_002378118.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] gi|218172517|gb|ACK71250.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] Length = 234 Score = 154 bits (390), Expect = 6e-36, Method: Composition-based stats. Identities = 37/233 (15%), Positives = 82/233 (35%), Gaps = 16/233 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + S + S + + D+ ++ L G L Sbjct: 3 ILIVEDEPEIAQLIRETLERENFSCQIAKSGTQALEIFGQLQPDLIILDLML--PGLDGL 60 Query: 62 ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------IL 109 E+ IR ++ ++ + +G DD + KP E Sbjct: 61 EVCTRIRQKPGAKDPYILMLTARGEEIDRIIGLSTGADDYLVKPFSPIELVARVRALLRR 120 Query: 110 ARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 + + + + + + E+ L E +L M+ G+ + Sbjct: 121 SLRHGGQVQQIYRTSHFTVDLDQHIATRQLDNEDSEILDLTTLEFNLLSTFMSYPGRVWS 180 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 +TQ+ ++G D +E VV++HI +LRKK+ + + + +GY + Sbjct: 181 RTQLIDKLWGN-DFFGDERVVDTHIRRLRKKVEPDPANPSFIKTVIGVGYKFE 232 >gi|166364957|ref|YP_001657230.1| OmpR family two-component response regulator [Microcystis aeruginosa NIES-843] gi|166087330|dbj|BAG02038.1| two-component response regulator OmpR subfamily [Microcystis aeruginosa NIES-843] Length = 246 Score = 154 bits (390), Expect = 6e-36, Method: Composition-based stats. Identities = 46/228 (20%), Positives = 91/228 (39%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++ G + E +A D+ ++ Sbjct: 12 ILVVDDEASIRRILETRLSMIGYEVVTAADGEEALETFRTAEPDLVVLDVM--MPKLDGY 69 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAA 114 + + +R S +P+I ++ + + + G DD V KP +E+ RV Sbjct: 70 GVCQELRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVEK 129 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 S+ G I++ ++ R E L E +LE L++ G+ ++++I Sbjct: 130 NGVPGIPSSGVIHIGSIKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEAFSRSEIL 189 Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 ++G + V+ VV+ HIS+LR KL + + + + R GY Sbjct: 190 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLF 237 >gi|33864662|ref|NP_896221.1| two-component response regulator [Synechococcus sp. WH 8102] gi|33632185|emb|CAE06641.1| two-component response regulator [Synechococcus sp. WH 8102] Length = 253 Score = 154 bits (390), Expect = 6e-36, Method: Composition-based stats. Identities = 53/231 (22%), Positives = 94/231 (40%), Gaps = 16/231 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD A V+ + G + E L S D+ ++ L Sbjct: 14 LVVDDEAAVRRVLVMRLQLSGYRVVCAEDGEQALELFHSESPDLVVLDVML--PKLDGFA 71 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119 + R +RA S VP+I +S ++ + D G DD + KP +E+ AR++ I RR+ Sbjct: 72 VCRRLRAESCVPIIFLSAVDAISEKVAGLDLGADDYLPKPFSPKELEARISTILRRVGRG 131 Query: 120 ---------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 G + V ++ R E L E +LE L G+ V + Sbjct: 132 AAEIESRELPTGQGVMCIGELVVDTNRRQVTRGAERINLTYTEFSLLELLFREPGEVVPR 191 Query: 171 TQIFSAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYS 219 +I ++G A + VV+ ++++LR KL + + + R +GY Sbjct: 192 AEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGYC 242 >gi|319892476|ref|YP_004149351.1| DNA-binding response regulator ResD [Staphylococcus pseudintermedius HKU10-03] gi|317162172|gb|ADV05715.1| DNA-binding response regulator ResD [Staphylococcus pseudintermedius HKU10-03] gi|323464421|gb|ADX76574.1| transcriptional regulatory protein SrrA [Staphylococcus pseudintermedius ED99] Length = 241 Score = 154 bits (390), Expect = 6e-36, Method: Composition-based stats. Identities = 35/232 (15%), Positives = 83/232 (35%), Gaps = 14/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ +G + + + + ++ L L Sbjct: 6 ILVVDDEHRIRKLLKLYLEREGYVIAEASDGREALDMATKYDYSCILLDLML--PEMDGL 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112 E+ +R P+I ++ ++ F+SG DD + KP RE Sbjct: 64 EVAVKLRELKDTPIIMLTAKGEENNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTES 123 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + + + E + + +D G L +E +L +L K + Q Sbjct: 124 SKAEQNEPHARDMIEFKHLTIDNDAHKVLADGTPVNLTPKEYELLIFLAKTPNKVFDREQ 183 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSIDW 222 + ++ ++ + V++H+ +LR+KL + + + +GY + Sbjct: 184 LLKEVW-HYEFYGDLRTVDTHVKRLREKLNRVSADAAKMIQTVWGVGYKFEV 234 >gi|312862953|ref|ZP_07723193.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Streptococcus vestibularis F0396] gi|322516692|ref|ZP_08069601.1| response regulator [Streptococcus vestibularis ATCC 49124] gi|311101813|gb|EFQ60016.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Streptococcus vestibularis F0396] gi|322124725|gb|EFX96163.1| response regulator [Streptococcus vestibularis ATCC 49124] Length = 235 Score = 154 bits (390), Expect = 6e-36, Method: Composition-based stats. Identities = 48/231 (20%), Positives = 94/231 (40%), Gaps = 15/231 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + + + D+ ++ L L Sbjct: 4 ILVVDDERPISDIIKFNLTKEGYEVVTAFDGREALEQFEAEKPDLVILDLML--PELDGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IR S P+I +S S + + G DD V KP +RE+LAR+ A RR + Sbjct: 62 EVAKEIRKTSHTPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARIKAHLRRTET 121 Query: 122 SNNRAETGPI-----------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 E + D + +G L RE +L +L + G+ + + Sbjct: 122 IETAVEESSNSGKQEISIGELIIVPDAFVAKKRGNEVELTHREFELLFHLATHMGQVMTR 181 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + ++G +D + V+ I +LR+K+ + + + ++R +GY + Sbjct: 182 EHLLETVWG-YDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYM 231 >gi|167767696|ref|ZP_02439749.1| hypothetical protein CLOSS21_02231 [Clostridium sp. SS2/1] gi|317499122|ref|ZP_07957400.1| response regulator receiver domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] gi|167710713|gb|EDS21292.1| hypothetical protein CLOSS21_02231 [Clostridium sp. SS2/1] gi|316893591|gb|EFV15795.1| response regulator receiver domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 226 Score = 154 bits (390), Expect = 6e-36, Method: Composition-based stats. Identities = 49/227 (21%), Positives = 97/227 (42%), Gaps = 7/227 (3%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEE-WLQSSAREDVSAIEAFLIG-KGE 58 M +++D +++ G GF + L + ++ ++ L G G Sbjct: 1 MIFVVEDDPNIRELVTYTLQSTGFDACGFENGSEFLKALSDGEKPELVLLDIMLPGEDGI 60 Query: 59 KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IY 116 +L R A +P+I ++ + + DSG DD + KP E+++RV A Sbjct: 61 SILGKLRKKSATRDLPIIMMTAKGTEYDKVLGLDSGADDYITKPFGMMELVSRVKAVLRR 120 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + G ++++ + + G L +E ++L L+ ++G + + Q+ + Sbjct: 121 SSRNEKKDEIIVGQLKIYPNKHKVKSCGNEVTLTNKEFKLLCLLVESKGNVLNRDQLLTN 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 I+G +D E V+ HI LR+KL +++ R +GY I N Sbjct: 181 IWG-YDFDGETRTVDVHIRSLRQKLGECG--KLIETVRGIGYRIGGN 224 >gi|116627886|ref|YP_820505.1| DNA-binding response regulator [Streptococcus thermophilus LMD-9] gi|116101163|gb|ABJ66309.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Streptococcus thermophilus LMD-9] gi|312278467|gb|ADQ63124.1| Alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus thermophilus ND03] Length = 235 Score = 154 bits (390), Expect = 6e-36, Method: Composition-based stats. Identities = 48/231 (20%), Positives = 94/231 (40%), Gaps = 15/231 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + + + D+ ++ L L Sbjct: 4 ILVVDDERPISDIIKFNLTKEGYEVVTAFDGREALEQFEAKKPDLVILDLML--PELDGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IR S P+I +S S + + G DD V KP +RE+LAR+ A RR + Sbjct: 62 EVAKEIRKTSHTPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARIKAHLRRTET 121 Query: 122 SNNRAETGPI-----------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 E + D + +G L RE +L +L + G+ + + Sbjct: 122 IETAVEESSNSGKQEISIGELVIVPDAFVAKKRGNEVELTHREFELLFHLATHMGQVMTR 181 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + ++G +D + V+ I +LR+K+ + + + ++R +GY + Sbjct: 182 EHLLETVWG-YDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYM 231 >gi|254520519|ref|ZP_05132575.1| two-component system response regulator [Clostridium sp. 7_2_43FAA] gi|226914268|gb|EEH99469.1| two-component system response regulator [Clostridium sp. 7_2_43FAA] Length = 228 Score = 154 bits (390), Expect = 6e-36, Method: Composition-based stats. Identities = 39/223 (17%), Positives = 93/223 (41%), Gaps = 7/223 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + G ++ + + D+ ++ L G +E Sbjct: 9 LIVDDDENICEVINMYLISAGYETRRCHNGREACAVFGDFKPDLVLLDIML--PGVDGIE 66 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRRL 119 + + IR S++P+I ++ + + G DD + KP +E + V Y Sbjct: 67 VLKWIRKSSEIPVIMLTAKGDTFDKVLALELGADDYIVKPFEPKELLARVKAVMRRYNYD 126 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + + + ++ + +G +P +E +L YL +N+ K + Q+ ++G Sbjct: 127 EKNTEIINYSDLVIDANSYNVVYKGVEIKMPPKEFELLHYLASNKNKVFTREQLLCEVWG 186 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D + V+ HI +LR+K+ + +++ +GY + Sbjct: 187 -YDYPGDSRTVDVHIKRLREKI-SGGENWLIETVWGVGYKFEV 227 >gi|124021896|ref|YP_001016203.1| two-component response regulator [Prochlorococcus marinus str. MIT 9303] gi|123962182|gb|ABM76938.1| two-component response regulator [Prochlorococcus marinus str. MIT 9303] Length = 290 Score = 154 bits (390), Expect = 6e-36, Method: Composition-based stats. Identities = 53/231 (22%), Positives = 93/231 (40%), Gaps = 16/231 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V + G + E + + D+ ++ L Sbjct: 28 ILVVDDEPAVLRILVMRLQLAGYRVICAEDGEEALEIFHREQPDLLVLDVML--PRLDGF 85 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI------ 115 + R +RA S VP+I +S ++ + D G DD + KP +E+ AR+A I Sbjct: 86 AVCRRLRAESCVPIIFLSALEAISERVAGLDLGADDYIPKPFSPKELEARIATILRRVGP 145 Query: 116 ------YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 R L V G + V ++ R GE L E +LE L G+ V Sbjct: 146 GSATAEIRDLPVGQGVMRVGDLVVDTNRRQVSRAGERIGLTYTEFSLLELLFREPGRVVP 205 Query: 170 KTQIFSAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGY 218 + +I ++G A + VV+ ++++LR KL + + + R +GY Sbjct: 206 RAEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 256 >gi|15614507|ref|NP_242810.1| two-component response regulator [Bacillus halodurans C-125] gi|10174562|dbj|BAB05663.1| two-component response regulator [Bacillus halodurans C-125] Length = 229 Score = 154 bits (390), Expect = 6e-36, Method: Composition-based stats. Identities = 41/226 (18%), Positives = 89/226 (39%), Gaps = 8/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ + +G ++ + + D+ ++ Sbjct: 7 ILIVDDELDLRELVTSYLRKEGFAVYTAETGDEAIKRLEQEPMDLVVLDVM--MDEMDGF 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117 + IRA SQ+P+I ++ + G DD + KP R I + Sbjct: 65 TACKEIRAFSQIPIIMLTARGGEDDKVMGLQIGADDYIVKPFSPRELVARIEVALRRTQG 124 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 +V + +R+ GR V G+ L ++E +L +L+ +RG+ + + + Sbjct: 125 IQQVDDTGYRFNELRIQPSGRKVFVNGQEISLTKKEYDLLVFLLEHRGRVFTREHLHDRL 184 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 +G+ + V++HI LR KL K + + +GY + + Sbjct: 185 WGMDTQQGTLRTVDTHIKTLRLKL--KPADRFIKTVWGVGYKFEVD 228 >gi|291457143|ref|ZP_06596533.1| DNA-binding response regulator RegX3 [Bifidobacterium breve DSM 20213] gi|291380978|gb|EFE88496.1| DNA-binding response regulator RegX3 [Bifidobacterium breve DSM 20213] Length = 234 Score = 154 bits (390), Expect = 6e-36, Method: Composition-based stats. Identities = 56/230 (24%), Positives = 101/230 (43%), Gaps = 13/230 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++ + +G + + E L + D+ ++ L G Sbjct: 4 ILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGGIDLVLLDLML--PGIDGT 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 L R IR S+VP+I ++ + + + G DD V KP RE+LAR+ A+ RR + Sbjct: 62 ALCRRIREQSRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVMRRNQA 121 Query: 121 --------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + G I + V+GE P +E +LEYLM N+G+ + + Q Sbjct: 122 TAQASGTVDDDIPLVCGDIAMQVGQHQVTVRGETVFFPLKEFELLEYLMQNKGRVMTRHQ 181 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221 + I+G D + ++ H+ ++R K+ + + R LGY ID Sbjct: 182 LIDRIWG-SDYVGDTKTLDVHVKRVRSKIEEDPAHPKYLTTVRGLGYKID 230 >gi|311031361|ref|ZP_07709451.1| two-component response regulator PhoP [Bacillus sp. m3-13] Length = 242 Score = 154 bits (390), Expect = 6e-36, Method: Composition-based stats. Identities = 50/236 (21%), Positives = 98/236 (41%), Gaps = 18/236 (7%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + G + E R D+ ++ L + + Sbjct: 5 ILIVDDEQSIVTLLQYNLQQAGYDVSVAMDGEEGLNKAMEERFDMIVLDLML--PKKDGI 62 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ + +R H P++ ++ + + G DD + KP RE++ARV AI RR++ Sbjct: 63 EVCKELRQHKIHTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRMQ 122 Query: 121 VSNNRAETGPIRVF-------------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167 E + + + + E L +E +L YL N+G+ Sbjct: 123 QMTGNTEAPKVEEDTSEKIVIGDVKILPEHYEAYFREERLELTPKEFELLVYLSKNKGRV 182 Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 + + Q+ SA++ +D A + +V+ HIS LR+K+ + + + R LGY ++ Sbjct: 183 LTRDQLLSAVW-NYDFAGDTRIVDVHISHLREKIETDTKKPTYIKTIRGLGYKLEE 237 >gi|226939099|ref|YP_002794170.1| PhoB [Laribacter hongkongensis HLHK9] gi|226714023|gb|ACO73161.1| PhoB [Laribacter hongkongensis HLHK9] Length = 229 Score = 154 bits (390), Expect = 6e-36, Method: Composition-based stats. Identities = 50/222 (22%), Positives = 94/222 (42%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +L++D +++ G + S E + L +A D+ ++ L G G + Sbjct: 5 ILLVEDEPAIQELIAFNLAQSGHQVLRAASAEAAQTLVKNALPDLVLLDWMLPGQSGIEF 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118 R +VP+I ++ Q + ++G DD + KP RE+ AR+ A R Sbjct: 65 ARRLRSDERTREVPIIMLTARSDEQDKIAGLETGADDYITKPFSPRELQARIKAVLRRRA 124 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 +++++ E +R+ G+ L E R+L + M + + +++Q+ ++ Sbjct: 125 PQMTDDAVEVQGLRLDPATHRVAAGGQPLDLGPTEFRLLHFFMTHPERVHSRSQLLDQVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G VEE V+ HI +LR L V + R GY Sbjct: 185 GDH-VFVEERTVDVHIRRLRSALEPSGHDALVQTVRGTGYRF 225 >gi|240146929|ref|ZP_04745530.1| DNA-binding response regulator SrrA [Roseburia intestinalis L1-82] gi|257200912|gb|EEU99196.1| DNA-binding response regulator SrrA [Roseburia intestinalis L1-82] Length = 234 Score = 154 bits (390), Expect = 6e-36, Method: Composition-based stats. Identities = 34/229 (14%), Positives = 84/229 (36%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + + N E ++ ++ L G Sbjct: 7 ILIVDDDNNIAELISLYLTKECFDTKIVNDGEEALKAFEQYNPNLILLDLML--PGIDGY 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARVA 113 ++ R +RA + VP+I +S + + + G DD + KP +E + Sbjct: 65 QVCREVRAKANVPIIMLSAKGEIFDKVLGLELGADDYIMKPFDSKELVARVKAVLRRYQP 124 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + V + +P +E +L +L ++ + + Q+ Sbjct: 125 VKVEEPAPELKCVKYPDLIVNLSNYSVIYKDNPIDMPPKELELLYFLASSPNQVFTREQL 184 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 I+G ++ + V+ H+ +LR+K+++ + + +GY + Sbjct: 185 LDHIWG-YEYIGDTRTVDVHVKRLREKIKDNDSWSL-STVWGIGYKFEV 231 >gi|297157290|gb|ADI07002.1| two-component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 246 Score = 154 bits (390), Expect = 6e-36, Method: Composition-based stats. Identities = 47/228 (20%), Positives = 94/228 (41%), Gaps = 15/228 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + D A +G ++ + + D+ ++ L G L Sbjct: 22 ILVVEDDPTIVDAIAARLRAEGFQVQTAGDGPAAVDTAQAWQPDLLVLDVML--PGFDGL 79 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R ++A VP++ ++ L G DD + KP RE+ ARV + RR++ Sbjct: 80 EVCRRVQATRPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRVER 139 Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + A T + R V+G L E +L L +++ Q+ Sbjct: 140 AALAAHTPRSGILRLGELEIDHAQRRVRVRGVDVHLTPTEFDLLVCLANTPRAVLSREQL 199 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + ++ D + V+SHI LR+K+ G + + + +GY+++ Sbjct: 200 LAEVWDWADASG-TRTVDSHIKALRRKI----GAERIRTVHGVGYALE 242 >gi|229074320|ref|ZP_04207360.1| hypothetical protein bcere0024_2450 [Bacillus cereus Rock4-18] gi|229094989|ref|ZP_04225986.1| hypothetical protein bcere0020_2480 [Bacillus cereus Rock3-29] gi|229113942|ref|ZP_04243369.1| hypothetical protein bcere0017_2490 [Bacillus cereus Rock1-3] gi|228669516|gb|EEL24931.1| hypothetical protein bcere0017_2490 [Bacillus cereus Rock1-3] gi|228688433|gb|EEL42314.1| hypothetical protein bcere0020_2480 [Bacillus cereus Rock3-29] gi|228708807|gb|EEL60940.1| hypothetical protein bcere0024_2450 [Bacillus cereus Rock4-18] Length = 237 Score = 154 bits (390), Expect = 6e-36, Method: Composition-based stats. Identities = 42/228 (18%), Positives = 90/228 (39%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD +++ + ++ + + L + ++ ++ + Sbjct: 6 ILIADDDKEIRNLLKIYLERELYMVDTAINGDEALQLFNQNNYNLVILDIM--MPKVDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R + VP++ ++ + G DD + KP E++ARV A+ RR V Sbjct: 64 EVCRKLRDKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKALMRRFLV 123 Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + + E L +E +L++ +N G+ KTQ+ Sbjct: 124 LGSNNTVQEKTTLAFKGLTINLNTYTVHTNKEEINLTGKELELLKFFTSNPGQVFTKTQL 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 F ++ + ++N V HI KLRKK+ + + + +GY Sbjct: 184 FRNVWD-DNYIEDDNTVMVHIRKLRKKIEIDPSNPKFIQTIWGIGYKF 230 >gi|224823455|ref|ZP_03696564.1| two component transcriptional regulator PhoB, winged helix family [Lutiella nitroferrum 2002] gi|224603910|gb|EEG10084.1| two component transcriptional regulator PhoB, winged helix family [Lutiella nitroferrum 2002] Length = 229 Score = 154 bits (390), Expect = 6e-36, Method: Composition-based stats. Identities = 46/222 (20%), Positives = 90/222 (40%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 +L++D +++ G + ++ E L +A D+ ++ L G G + Sbjct: 5 ILLVEDEPAIQELIAFNLTQAGHHVLRASTAEAALMLVKNALPDLVLLDWMLPGGSGIDI 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118 + R QVP+I ++ Q + ++G DD + KP RE+ + R Sbjct: 65 AKRLRADERTRQVPIIMLTARSDEQDKIVGLETGADDYITKPFSPRELLARIKAVLRRRA 124 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 +++++ E +R+ G L E R+L + M + + ++ Q+ ++ Sbjct: 125 PQMTDDAVEVKGLRLDPATHRVSTDGNPIDLGPTEFRLLHFFMTHPERVHSRAQLLDQVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G VEE V+ HI +LR L + + R GY Sbjct: 185 GDH-VFVEERTVDVHIRRLRSSLEATGHDGLIQTVRGTGYRF 225 >gi|153815453|ref|ZP_01968121.1| hypothetical protein RUMTOR_01688 [Ruminococcus torques ATCC 27756] gi|145847095|gb|EDK24013.1| hypothetical protein RUMTOR_01688 [Ruminococcus torques ATCC 27756] Length = 233 Score = 154 bits (390), Expect = 6e-36, Method: Composition-based stats. Identities = 44/229 (19%), Positives = 92/229 (40%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + + + E + ++ ++ L G Sbjct: 7 ILIVDDDENIAELISLYLTKECFDTKIVFNGEDALSTFETYEPNLILLDLML--PGIDGY 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R IRA S VP+I +S + + + G DD + KP +E++ARV A+ RR Sbjct: 65 QVCREIRAKSGVPIIMLSAKGEIFDKVLGLELGADDYILKPFDSKEMIARVRAVLRRYHP 124 Query: 122 ---------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 E + + G +P +E +L L ++ + + Q Sbjct: 125 IKNEPSQAEKPKCVEYEGLTINLTNYSVLCDGNTVEMPPKELELLYCLASSPNQVFTREQ 184 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + I+G ++ + V+ HI +LR+KL++ + + +GY + Sbjct: 185 LLDRIWG-YEYLGDTRTVDVHIKRLREKLKDHPHWKL-GTVWGIGYKFE 231 >gi|187479560|ref|YP_787585.1| phosphate regulon two-component response regulator [Bordetella avium 197N] gi|115424147|emb|CAJ50700.1| phosphate regulon two-component response regulator [Bordetella avium 197N] Length = 232 Score = 154 bits (390), Expect = 6e-36, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 92/224 (41%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D +++ G + E + L + D+ ++ L G L Sbjct: 5 ILVVEDEPAIQELIAVNLSFAGHKVLRAFDAEQAQTLIRAELPDLILLDWML--PGMSGL 62 Query: 62 ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 L R +R VP+I ++ + Q +D ++G DD + KP +E++AR+ A+ RR Sbjct: 63 SLARKLRDDERTRNVPVIMLTAKGAEQDKVDGLEAGADDYITKPFSPKELMARIKAVLRR 122 Query: 119 LKVSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 ++ + + E R+L + M + + +++Q+ Sbjct: 123 RAPQLTDDIIDVGGLKLDPVTHRLSGDSQALQIGPTEFRLLHFFMTHPERVFSRSQLLDQ 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G VEE V+ HI +LRK L V++ R GY Sbjct: 183 VWGDH-VFVEERTVDVHIRRLRKALEPTGHDAHVETVRGSGYRF 225 >gi|163938276|ref|YP_001643160.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163860473|gb|ABY41532.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] Length = 237 Score = 154 bits (390), Expect = 6e-36, Method: Composition-based stats. Identities = 42/228 (18%), Positives = 89/228 (39%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD ++D + ++ + E L + ++ ++ + Sbjct: 6 ILIADDDKEIRDLLKRYLERELYMVDTAINGEEALCLFNQNNYNLVILDLM--MPKVDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R + +P++ ++ + G DD + KP E++ARV A+ RR V Sbjct: 64 EVCRKLRDTTNIPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKALMRRFLV 123 Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + G+ L +E +L++ +N + KTQ+ Sbjct: 124 LGSNTNVQEKTALTFKGLTIDFKKYTVHTNGKEINLTGKELELLKFFASNPEQVFTKTQL 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 F ++ + ++N V HI KLRKK+ + + + +GY Sbjct: 184 FRNVWD-DNYTEDDNTVMVHIRKLRKKIEIDSSNPKFIQTVWGIGYKF 230 >gi|332705560|ref|ZP_08425638.1| two component transcriptional regulator, winged helix family [Lyngbya majuscula 3L] gi|332355920|gb|EGJ35382.1| two component transcriptional regulator, winged helix family [Lyngbya majuscula 3L] Length = 242 Score = 154 bits (390), Expect = 6e-36, Method: Composition-based stats. Identities = 34/225 (15%), Positives = 87/225 (38%), Gaps = 8/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ + ++ + D+ ++ L Sbjct: 6 ILVVDDDPAIRNLILRFLSQKNFQMQAAQDGKTALATFEQFNPDLVILDVNL--PDALGY 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA----AIYR 117 L + +++ + V ++ ++ F G DD + KP +E+ RV Sbjct: 64 NLCQQMQSRTDVFVLLLTSRSDAADKNQGFQQGADDYITKPFDLQELENRVRAILKRKRA 123 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 R + + R+ + + PL E +L +L + G+ + ++++ + Sbjct: 124 VTATEAERLVFDHLVIDPGRREVTIDEILIPLTALEFDLLHFLACHPGRVLRRSELIQEV 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 + +D ++ VV+ HI ++R+K+ N + + R +GY + Sbjct: 184 W-EYDYVGDQRVVDVHIGQIRRKIEVNSSDPSLIQTVRGVGYKFE 227 >gi|168218156|ref|ZP_02643781.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239] gi|182379830|gb|EDT77309.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239] Length = 231 Score = 154 bits (390), Expect = 6e-36, Method: Composition-based stats. Identities = 49/227 (21%), Positives = 95/227 (41%), Gaps = 9/227 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD +++ +G E + + + D+ ++ L LE Sbjct: 7 LIVDDEEHIRELIKFNLKKEGYDTEVAVNGTEALNIIREIKFDLILLDLML--PEIDGLE 64 Query: 63 LPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYR 117 + + IR S +P++ I+ + + G DD + KP RE++ARV A Sbjct: 65 VCKEIRRNEETSDIPVMMITAKGEEFDKVLGLELGADDYITKPFSIRELMARVKALLRRS 124 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 +K N + G + V R+ + L +E +L+ L+ N+G + + + I Sbjct: 125 NVKKEENIIKFGDVVVNFKTREVIKGTQNVELTLKEFELLKLLIKNKGNILTRELLLDKI 184 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223 +G ++ E V+ HI LRKK+ + + + R +GY N Sbjct: 185 WG-YEYIGETRTVDVHIRHLRKKIESDDKNPQYIQTIRGVGYKFTSN 230 >gi|307149957|ref|YP_003885341.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 7822] gi|306980185|gb|ADN12066.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7822] Length = 242 Score = 154 bits (390), Expect = 7e-36, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 89/228 (39%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++ G + E D+ ++ Sbjct: 8 ILVVDDEASIRRILETRLSMIGYDVVTAADGEEALETFRQTNPDLVVLDVM--MPKLDGY 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAA 114 + + +R S +P+I ++ + + + G DD V KP +E+ RV Sbjct: 66 GVCQELRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVEK 125 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 S+ G I++ ++ R E L E +LE L++ G+ ++++I Sbjct: 126 NGAPGIPSSGVIHVGSIKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEIL 185 Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 ++G + V+ VV+ HIS+LR KL + + + + R GY Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLF 233 >gi|303239291|ref|ZP_07325819.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] gi|302593077|gb|EFL62797.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] Length = 225 Score = 154 bits (390), Expect = 7e-36, Method: Composition-based stats. Identities = 53/222 (23%), Positives = 101/222 (45%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD A ++ +G + + + + +S + + I ++ Sbjct: 6 ILIADDEARMRKLLSDFLKKEGFQVLEAKNGKEALDIFNSDQ-SIDLIILDIMMPELDGW 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R IR S+VP+I ++ L FD G D+ + KP ++ARV A+ RR Sbjct: 65 SVCRQIRKSSRVPVIMLTARSDESDELFGFDLGADEYITKPFSPMILVARVQALLRRSGN 124 Query: 122 SNNRAE-TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + + + GRD + G L +E +L +L N+G +++ QI ++++ Sbjct: 125 AEYSTKLFDGLEINEIGRDVYIDGVKLDLSPKEFELLVFLADNKGIALSRDQILNSVWD- 183 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D + V++HI KLR KL +K D + + R LGY + Sbjct: 184 YDYFGDARTVDTHIKKLRLKLGDKG--DFIQTVRGLGYKFEV 223 >gi|291572104|dbj|BAI94376.1| two-component response regulator [Arthrospira platensis NIES-39] Length = 236 Score = 154 bits (390), Expect = 7e-36, Method: Composition-based stats. Identities = 41/225 (18%), Positives = 88/225 (39%), Gaps = 8/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ +E E L D+ ++ L Sbjct: 6 ILVVDDDPAIRNLISRYLTQQNYEVESAKDGETALQLFDEFNPDLVILDVNL--PDTTGF 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L + +++ ++V ++ ++ + FD G DD + KP E+ ARV AI +R + Sbjct: 64 ALCQEMQSRTRVFVLLLTSLTGEADKIKGFDLGADDYITKPFGLAELGARVRAILKRQRS 123 Query: 122 SNNRAETGPIR----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + R+ ++ L E +L L G+ ++++ + Sbjct: 124 VEETEMRSLTYGDLVIDPVRREVYIRDRQISLSALEFDLLYCLAKKPGRAWRRSELLQEV 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221 + ++ E+ VV+ HI ++RKK+ + + R +GY D Sbjct: 184 WD-YEYEGEQRVVDVHIGQIRKKIEPDTDKPVLIKTIRGVGYMFD 227 >gi|229194250|ref|ZP_04321094.1| hypothetical protein bcere0002_58370 [Bacillus cereus ATCC 10876] gi|228589225|gb|EEK47200.1| hypothetical protein bcere0002_58370 [Bacillus cereus ATCC 10876] Length = 242 Score = 154 bits (390), Expect = 7e-36, Method: Composition-based stats. Identities = 47/228 (20%), Positives = 91/228 (39%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD ++D + ++ E L + + D+ ++ + Sbjct: 12 ILIADDEKEIRDLLKKYMERELYKVDVAIDGEHALSLFNKNKYDLFILDLM--MPKIDGI 69 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 E+ R +R + VP++ ++ + G DD + KP E++ARV A+ RR Sbjct: 70 EVCRKLREKTNVPILMLTAKNHETDKILGLSMGADDYITKPFSINEVVARVKALMRRFLV 129 Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 R E I + +G+ PL +E +L + N + K+Q+ Sbjct: 130 LGSEAGDREQTRIEFKEISIDMKKYTVFKEGKEIPLTAKEMELLRFFALNPEQVFTKSQL 189 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 F ++G + ++N V HI KLRKK+ + + + +GY Sbjct: 190 FRNVWG-DNYLEDDNTVMVHIRKLRKKIEVDPSNPQLIQTVWGIGYKF 236 >gi|310288067|ref|YP_003939326.1| Two-component response regulator regX [Bifidobacterium bifidum S17] gi|309252004|gb|ADO53752.1| Two-component response regulator regX [Bifidobacterium bifidum S17] Length = 234 Score = 154 bits (390), Expect = 7e-36, Method: Composition-based stats. Identities = 57/230 (24%), Positives = 101/230 (43%), Gaps = 13/230 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++ + +G + S E L + D+ ++ L G Sbjct: 4 ILIVEDEESYREPLVYQLTREGYDVSAAASGEEGLELFTKGGIDLVLLDLML--PGIDGT 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 L R IR S+VP+I ++ + + + G DD V KP RE+LAR+ A+ RR + Sbjct: 62 ALCRRIREQSRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVLRRNQG 121 Query: 121 --------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + G I + V+GE P +E +LEYLM N+G+ + + Q Sbjct: 122 AVEASGAVDDDIPLVCGDISMQVGQHQVTVRGESVFFPLKEFELLEYLMQNKGRVMTRHQ 181 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221 + I+G D + ++ H+ ++R K+ + + R LGY ID Sbjct: 182 LIDRIWG-SDYVGDTKTLDVHVKRVRSKIEEDPAHPQYLTTVRGLGYKID 230 >gi|228918481|ref|ZP_04081925.1| hypothetical protein bthur0012_56190 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228950319|ref|ZP_04112489.1| hypothetical protein bthur0007_63830 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228809337|gb|EEM55788.1| hypothetical protein bthur0007_63830 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228841166|gb|EEM86364.1| hypothetical protein bthur0012_56190 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 242 Score = 154 bits (390), Expect = 7e-36, Method: Composition-based stats. Identities = 48/228 (21%), Positives = 92/228 (40%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD ++D + ++ E L + + D+ ++ + Sbjct: 12 ILIADDEKEIRDLLKKYMERELYKVDVAIDGEHALSLFNKNKYDLFILDLM--MPKIDGI 69 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 E+ R +R + VP++ ++ + G DD + KP E++ARV A+ RR Sbjct: 70 EVCRKLREKTNVPILMLTAKNHETDKILGLSMGADDYITKPFSINEVVARVKALMRRFLV 129 Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 R E I + +GE PL +E +L + +N + K+Q+ Sbjct: 130 LGSEAGDREQTRIEFKEISIDMKKYVVFKEGEEIPLTAKEMELLRFFASNPEQVFTKSQL 189 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 F ++G + ++N V HI KLRKK+ + + + +GY Sbjct: 190 FRNVWG-DNYLEDDNTVMVHIRKLRKKIEVDPSNPQLIQTVWGIGYKF 236 >gi|78183737|ref|YP_376171.1| two component transcriptional regulator [Synechococcus sp. CC9902] gi|78168031|gb|ABB25128.1| two component transcriptional regulator, winged helix family [Synechococcus sp. CC9902] Length = 253 Score = 154 bits (390), Expect = 7e-36, Method: Composition-based stats. Identities = 54/230 (23%), Positives = 96/230 (41%), Gaps = 16/230 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD A V+ + G + E L S D+ ++ L Sbjct: 14 LVVDDEAAVRRVLVMRLQLSGYRVVCAEDGEQALELFHSESPDLIVLDVML--PKLDGFA 71 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +RA S VP+I +S ++ + D G DD + KP +E+ AR+A I RR+ Sbjct: 72 VCRRLRAESCVPIIFLSAVEAISERVAGLDLGADDYLPKPFSPKELEARIATILRRVGRG 131 Query: 123 NNRAETGPIRV------------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 N E+ + ++ R E L E +LE L + G V + Sbjct: 132 NAVVESRELPTGQGVLRLGELVVDTNRRQVTRGSERINLTYTEFSLLELLFRDPGHVVPR 191 Query: 171 TQIFSAIYG-LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218 +I ++G A + VV+ ++++LR KL + + + + R +GY Sbjct: 192 AEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 241 >gi|42780487|ref|NP_977734.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|206977570|ref|ZP_03238464.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217958874|ref|YP_002337422.1| DNA-binding response regulator [Bacillus cereus AH187] gi|222095033|ref|YP_002529093.1| response regulator [Bacillus cereus Q1] gi|42736406|gb|AAS40342.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|206744288|gb|EDZ55701.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217068126|gb|ACJ82376.1| DNA-binding response regulator [Bacillus cereus AH187] gi|221239091|gb|ACM11801.1| response regulator [Bacillus cereus Q1] Length = 223 Score = 154 bits (390), Expect = 7e-36, Method: Composition-based stats. Identities = 41/222 (18%), Positives = 84/222 (37%), Gaps = 7/222 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + ++ + G + + + D ++ L Sbjct: 7 LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETNHYDFVVLDIM--MPEMDGLS 64 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRLK 120 + + IR S VP+I ++ ++ G DD + KP E+ + Sbjct: 65 VCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTKQ 124 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + GPI + R EV GE L +E +L +L + G+ ++ Q+ ++G Sbjct: 125 EQQEEFQFGPILINEKSRKIEVDGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG- 183 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D A V++H+ +R KL + + +GY + Sbjct: 184 YDYAGSTRTVDTHVKTMRLKLGESGN--YIQTVWGVGYKFEV 223 >gi|72163309|ref|YP_290966.1| response regulator receiver [Thermobifida fusca YX] gi|71917041|gb|AAZ56943.1| response regulator receiver [Thermobifida fusca YX] Length = 230 Score = 154 bits (390), Expect = 7e-36, Method: Composition-based stats. Identities = 52/224 (23%), Positives = 94/224 (41%), Gaps = 8/224 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D D L +G + + + D+ ++ L G E Sbjct: 5 LVVEDEESYSDALSYLLRKEGFEVAVAPTGTSALEIFDRTGADLVLLDLML--PGLSGTE 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYRR 118 + R +R S VP+I ++ S + + G DD V KP R I A + Sbjct: 63 VCRTLRQKSNVPVIMLTAKDSEIDKVVGLELGADDYVTKPFSSRELVARIRAVLRRRTAD 122 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 V + E GP+R+ + V+GE LP +E +LE L+ N G+ + + Q+ ++ Sbjct: 123 DTVLPSVLEAGPVRMDVERHVVTVRGENVQLPLKEFELLEVLLRNAGRVLTRPQLIDRVW 182 Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 G D + ++ HI +LR K+ + + + R LGY + Sbjct: 183 GA-DYVGDTKTLDVHIKRLRAKIETDPSKPQHIITVRGLGYKFE 225 >gi|310814679|ref|YP_003962643.1| phosphate regulon transcriptional regulatory protein PhoB [Ketogulonicigenium vulgare Y25] gi|308753414|gb|ADO41343.1| phosphate regulon transcriptional regulatory protein PhoB [Ketogulonicigenium vulgare Y25] Length = 229 Score = 154 bits (390), Expect = 7e-36, Method: Composition-based stats. Identities = 48/224 (21%), Positives = 88/224 (39%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D ++ F +G + + + + D+ ++ L G + Sbjct: 8 ILVIEDEPAQREVLAYNFEAEGYRVSTAPNGDSALLQLAEEPPDLIVLDWML--PGVSGI 65 Query: 62 ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIY 116 E+ R I+ +P+I +S + ++G DD V KP E+ AR Sbjct: 66 EICRQIKARAETRAIPVIMLSARSEEGDKVRGLETGADDYVTKPYSITELLARARAQLRR 125 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 R I + + G L E R+L LM G+ ++ Q+ Sbjct: 126 TRPATIGGVLRFEDITLDGETHRVTRDGNELRLGPTEFRLLTTLMERPGRVWSREQLLDR 185 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G D V+ V+ H+ +LRK L G DP+ + R GY++ Sbjct: 186 VWGR-DIYVDSRTVDVHVGRLRKALMIHGGTDPLRTVRGAGYAL 228 >gi|168213412|ref|ZP_02639037.1| DNA-binding response regulator [Clostridium perfringens CPE str. F4969] gi|170715032|gb|EDT27214.1| DNA-binding response regulator [Clostridium perfringens CPE str. F4969] Length = 228 Score = 154 bits (390), Expect = 7e-36, Method: Composition-based stats. Identities = 44/224 (19%), Positives = 94/224 (41%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + G +++ + + + + ++ ++ +I G + Sbjct: 8 ILIVDDDENICEVIKMYLETTGYNVKVAHDGKAAKEEFVNFSPNLVVLD--MILPGIDGM 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118 E+ + IR S VP+I ++ + + G DD V KP +E + V Y Sbjct: 66 EVLKWIRKDSNVPVIMLTAKGETFDKVLALEIGADDYVVKPFEPKELLARVKAVMRRYSG 125 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + N + + ++ GE P +E +L YL +N+ K + Q+ ++ Sbjct: 126 EEPDNVVLNFPGLTIDANSYKVIYNGEEVKTPPKEFELLHYLASNKNKVFTRDQLLCEVW 185 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 G +D + V+ HI +LR+KL N +++ +GY + Sbjct: 186 G-YDYPGDSRTVDVHIKRLREKL-NGGEDWQLETVWGVGYKFEV 227 >gi|120405794|ref|YP_955623.1| two component transcriptional regulator [Mycobacterium vanbaalenii PYR-1] gi|160012530|sp|A1TEL7|MPRA_MYCVP RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial persistence regulator A gi|119958612|gb|ABM15617.1| two component transcriptional regulator, winged helix family [Mycobacterium vanbaalenii PYR-1] Length = 231 Score = 154 bits (390), Expect = 7e-36, Method: Composition-based stats. Identities = 44/225 (19%), Positives = 87/225 (38%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V++ +G S+E L +S R D ++ L Sbjct: 5 ILVVDDDRAVRESLRRSLSFNGYSVELAQDGREALDLIASDRPDAVVLDVM--MPRLDGL 62 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-----HREILARVAAI 115 E+ R +R+ P++ ++ S+ + D+G DD + KP R Sbjct: 63 EVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTT 122 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + + R+ L R E +LE L+AN + + +++I Sbjct: 123 PDDGAGESAAMTFSDLSLDPVTREVTRGDRPISLTRTEFSLLEMLIANPRRVLTRSRILE 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G FD N +E ++ LR+K + + + R +GY + Sbjct: 183 EVWG-FDFPTSGNALEVYVGYLRRKTEAEGEPRLIHTVRGVGYVL 226 >gi|304320850|ref|YP_003854493.1| phosphate regulon response regulator PhoB [Parvularcula bermudensis HTCC2503] gi|303299752|gb|ADM09351.1| phosphate regulon response regulator PhoB [Parvularcula bermudensis HTCC2503] Length = 230 Score = 154 bits (390), Expect = 7e-36, Method: Composition-based stats. Identities = 45/223 (20%), Positives = 89/223 (39%), Gaps = 4/223 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++++D + +G E ++ D+ ++ L G +V Sbjct: 6 ILIVEDEETIAGLLEYNLSREGYETLIAEDGEEALIQIEESKPDLIVLDWMLPKVSGIEV 65 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118 R+ +P+I ++ + D+G DD V KP E+ + R Sbjct: 66 CRRLRMKPETEGIPIILLTARAEEGDRVRGLDTGADDYVVKPFSVSELSSRIKAVLRRAR 125 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + G I++ + L E R+L++L+ N G+ ++ Q+ +A++ Sbjct: 126 PSLIAEAVTCGDIQIDRAAHRVRRGEKEVHLGPTEFRLLDHLIQNPGRVFSREQLLNAVW 185 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 G D VE V+ HI +LRK L +P+ + R GY+++ Sbjct: 186 G-SDVFVEARTVDVHIGRLRKALNAHGHQNPIRTVRSAGYALE 227 >gi|254827167|ref|ZP_05231854.1| resD [Listeria monocytogenes FSL N3-165] gi|258599549|gb|EEW12874.1| resD [Listeria monocytogenes FSL N3-165] Length = 238 Score = 154 bits (390), Expect = 7e-36, Method: Composition-based stats. Identities = 34/231 (14%), Positives = 89/231 (38%), Gaps = 14/231 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD ++ + +E + + + + +V ++ G+ +E Sbjct: 8 LVVDDEDRIRRLLKMYLERENYRIEEASDGDQALSMALNNNYEVILLDLM--MPGKDGIE 65 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARVA 113 + R +R P++ ++ + F+ G DD + KP RE A+ + Sbjct: 66 VCRELREFKSTPVVMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKAVLRRAKQS 125 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + +++ ++ V G+ L +E +L YL + K + + Sbjct: 126 SEESAGGTPGDIITFPHLKIDNEAHRVIVDGKEIGLTPKEYDLLYYLAKSPDKVFNRESL 185 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF--DPVDSKRFLGYSIDW 222 ++ ++ + +++H+ +LR+KL + + + LGY + Sbjct: 186 LKEVW-RYEFFGDLRTIDTHVKRLREKLHDVSEDAARMIVTVWGLGYKFEV 235 >gi|38233301|ref|NP_939068.1| putative two component system response regulator [Corynebacterium diphtheriae NCTC 13129] gi|38199560|emb|CAE49211.1| Putative two component system response regulator [Corynebacterium diphtheriae] Length = 232 Score = 154 bits (390), Expect = 7e-36, Method: Composition-based stats. Identities = 44/220 (20%), Positives = 90/220 (40%), Gaps = 5/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + +G + D+ ++ L G + Sbjct: 12 ILVVDDDPAISEMLTIVLEAEGFEPVAVTDGAVAVDAFRTESPDLVLLDLML--PGMNGI 69 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ RIIR S VP++ ++ + +SG DD +NKP +E++AR+ A RR + Sbjct: 70 DICRIIRQESAVPIVMLTAKTDTVDVVLGLESGADDYINKPFKPKELIARLRARLRRTED 129 Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 S + + G + E L E +L L + G+ + ++ ++G Sbjct: 130 SPSETIEIGDLTIDVLGHEVTRGDEEIQLTPLEFDLLLELASKPGQVFTREELLQKVWG- 188 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVD-SKRFLGYS 219 + A + +V H+ +LR K+ + + R +GY Sbjct: 189 YRNASDTRLVNVHVQRLRSKIEKDPENPHIVLTVRGVGYK 228 >gi|188588892|ref|YP_001920540.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Clostridium botulinum E3 str. Alaska E43] gi|251779766|ref|ZP_04822686.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|188499173|gb|ACD52309.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Clostridium botulinum E3 str. Alaska E43] gi|243084081|gb|EES49971.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 234 Score = 154 bits (390), Expect = 7e-36, Method: Composition-based stats. Identities = 44/228 (19%), Positives = 97/228 (42%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + G + N+ + + + ++ L G Sbjct: 6 ILIVDDEEHIIELLKFNLINAGYKVISANNGIDALKIAKAENPKLILLDLML--PGLDGF 63 Query: 62 ELPRII---RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 ++ + + + + +I ++ + + G DD + KP RE+LARV A+ RR Sbjct: 64 DVCKEVKKNKETQNISIIMLTAKGEEIDKILGLELGADDYITKPFSVRELLARVKAVLRR 123 Query: 119 LKV----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N E+ +++ D + + + L +E +L+ L+ N+GK + + + Sbjct: 124 TYPGVDIEENSYESQGLKIDFDRHEVFINNQKIELTLKEFDLLKILIKNKGKILQRETLL 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221 I+G ++ E V+ HI LRKK+ + +++ R +GY + Sbjct: 184 DKIWG-YEYIGETRTVDVHIRYLRKKIEEDDKNPKFIETIRGVGYRFN 230 >gi|145222477|ref|YP_001133155.1| two component transcriptional regulator [Mycobacterium gilvum PYR-GCK] gi|315442922|ref|YP_004075801.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Mycobacterium sp. Spyr1] gi|145214963|gb|ABP44367.1| two component transcriptional regulator, winged helix family [Mycobacterium gilvum PYR-GCK] gi|315261225|gb|ADT97966.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Mycobacterium sp. Spyr1] Length = 231 Score = 154 bits (390), Expect = 7e-36, Method: Composition-based stats. Identities = 50/225 (22%), Positives = 96/225 (42%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V++ +G S+E L +S R D ++ L Sbjct: 5 ILVVDDDRAVRESLRRSLSFNGYSVELAQDGREALDLIASDRPDAVVLDVM--MPRLDGL 62 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +R+ P++ ++ S+ + D+G DD + KP E+LAR+ A+ RR Sbjct: 63 EVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTS 122 Query: 121 VSNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + E+ + R+ L R E +LE L+ N + + +++I Sbjct: 123 PVDGDGESAAMTFSDLTLDPVTREVTRGNRSISLTRTEFSLLEMLITNPRRVLTRSRILE 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G FD N +E ++ LR+K + + + R +GY + Sbjct: 183 EVWG-FDFPTSGNALEVYVGYLRRKTEAEGEPRLIHTVRGVGYVL 226 >gi|296535704|ref|ZP_06897875.1| phosphate regulon transcriptional regulatory protein PhoB [Roseomonas cervicalis ATCC 49957] gi|296263965|gb|EFH10419.1| phosphate regulon transcriptional regulatory protein PhoB [Roseomonas cervicalis ATCC 49957] Length = 238 Score = 154 bits (390), Expect = 7e-36, Method: Composition-based stats. Identities = 46/223 (20%), Positives = 90/223 (40%), Gaps = 4/223 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D A + G ++ + + A D+ ++ L G +V Sbjct: 13 ILVVEDEAPLLTLLRYNLEKQGFRVDEAADGQEALMRVAEAPPDLVLLDWMLPALSGLEV 72 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118 R +P+I ++ Q + D+G DD + KP ++AR+ A Sbjct: 73 CRQLRRRPDTRDLPIIMVTARTEDQDAVRALDTGADDYIAKPFVMDALMARIRALLRRSG 132 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + + D G L E R+LE+ + + G+ ++ Q+ A++ Sbjct: 133 GVATKGTLAWHDVTMDQDAHRVSRNGRALHLGPTEYRLLEFFLQHPGRVFSREQLLDAVW 192 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 G D VE V+ HI +LRK + + D + + R GY++D Sbjct: 193 GR-DIHVEPRTVDVHIRRLRKAVNGEGEVDIIRTVRSAGYALD 234 >gi|269216256|ref|ZP_06160110.1| DNA-binding response regulator RegX3 [Slackia exigua ATCC 700122] gi|269130515|gb|EEZ61593.1| DNA-binding response regulator RegX3 [Slackia exigua ATCC 700122] Length = 230 Score = 154 bits (390), Expect = 7e-36, Method: Composition-based stats. Identities = 46/224 (20%), Positives = 87/224 (38%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G S++ + E D+ ++ L G Sbjct: 8 ILIVDDEQSITDFVSYSLKKEGFSVDTAANGEEGLAAAMRKDYDLFILDIML--PGMDGY 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYR 117 EL R +RA + P++ +S + + + G DD + KP RE++ARV Sbjct: 66 ELCRRLRARTASPVLFLSARDTELDKVVGLEIGGDDYLAKPFGVRELIARVRALLRRGRL 125 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 ++ G + + + L RE +L LM GK + ++ Sbjct: 126 EDSPTDQSISAGGVTLNEGRHSADGPNGPIDLTPREFELLAALMKVAGKVATREELLREA 185 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 + ++ E V++HI +LR KL + +++ R GY Sbjct: 186 WD-WEYITETKTVDTHIKRLRDKLSAAGIDQNVIETVRGYGYRF 228 >gi|152974825|ref|YP_001374342.1| two component transcriptional regulator [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152023577|gb|ABS21347.1| two component transcriptional regulator, winged helix family [Bacillus cytotoxicus NVH 391-98] Length = 223 Score = 154 bits (390), Expect = 7e-36, Method: Composition-based stats. Identities = 42/222 (18%), Positives = 87/222 (39%), Gaps = 7/222 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L+DD + ++ + G + + + A D ++ + Sbjct: 7 LLVDDESDMRQLVGMYLDNFGYEWDEAENGKEALLKLEEAHYDFVILDIM--MPEMDGIA 64 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRLK 120 + + IR S +P+I ++ ++ +G DD V KP E+ + Sbjct: 65 VCKEIRKTSDIPIIFLTAKGEEWNRVNGLRNGADDYVVKPFSPGELIARMEAVLRRYTKQ 124 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 E GPIR+ R E G++ L +E +L +L + G+ ++ Q+ ++G Sbjct: 125 GQQEELEFGPIRMNEKSRKAETNGKIISLTVKEFDLLYFLCQHHGQVFSREQLLEKVWG- 183 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D A V++H+ +R KL + + +GY + Sbjct: 184 YDYAGSTRTVDTHVKTMRLKLGESGN--CIQTVWGVGYKFEV 223 >gi|55821169|ref|YP_139611.1| response regulator [Streptococcus thermophilus LMG 18311] gi|55737154|gb|AAV60796.1| response regulator (homolog to RR02/MicA Spn & RR02 Sth &VicR Spy) [Streptococcus thermophilus LMG 18311] Length = 235 Score = 154 bits (390), Expect = 7e-36, Method: Composition-based stats. Identities = 48/231 (20%), Positives = 94/231 (40%), Gaps = 15/231 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + + + D+ ++ L L Sbjct: 4 ILVVDDERPISDIIKFNLTKEGYEVVTAFDGREALEQFEAKKPDLVILDLML--PELDGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IR S P+I +S S + + G DD V KP +RE+LAR+ A RR + Sbjct: 62 EVAKEIRKTSHTPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARIKAHLRRTET 121 Query: 122 SNNRAETGPI-----------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 E + D + +G L RE +L +L + G+ + + Sbjct: 122 IETAVEESSNSGKQEISIGELIIVPDAFVAKKRGNEVELTHREFELLFHLATHMGQVMTR 181 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + ++G +D + V+ I +LR+K+ + + + ++R +GY + Sbjct: 182 EHLLETVWG-YDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYM 231 >gi|229165252|ref|ZP_04293041.1| hypothetical protein bcere0007_2430 [Bacillus cereus AH621] gi|228618223|gb|EEK75259.1| hypothetical protein bcere0007_2430 [Bacillus cereus AH621] Length = 237 Score = 154 bits (390), Expect = 7e-36, Method: Composition-based stats. Identities = 43/228 (18%), Positives = 89/228 (39%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD ++D + ++ + E L + ++ ++ + Sbjct: 6 ILIADDDKEIRDLLKRYLERELYMVDTAINGEEALCLFNQNNYNLVILDLM--MPKVDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R + +P++ ++ + G DD + KP E++ARV A+ RR V Sbjct: 64 EVCRKLRDTTNIPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKALMRRFLV 123 Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + G+ L +E +L++ +N + KTQI Sbjct: 124 LGSNTNVQEKTALTFKGLTIDFKKYTVHTNGKEINLTGKELELLKFFASNPEQVFTKTQI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 F ++ + ++N V HI KLRKK+ + + + +GY Sbjct: 184 FRNVWD-DNYIEDDNTVMVHIRKLRKKIEIDSSNPKFIQTVWGIGYKF 230 >gi|229181171|ref|ZP_04308503.1| Two component transcriptional regulator, winged helix [Bacillus cereus 172560W] gi|228602362|gb|EEK59851.1| Two component transcriptional regulator, winged helix [Bacillus cereus 172560W] Length = 232 Score = 154 bits (390), Expect = 7e-36, Method: Composition-based stats. Identities = 54/229 (23%), Positives = 85/229 (37%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A + D +G + E + + D+ ++ Sbjct: 6 ILIVDDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIETQPIDLVVLDIM--MPKMDGY 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IRA +P+I +S S + G DD + KP E++ARV A RR Sbjct: 64 EVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 123 Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 N V + R V GE L +E IL L ++ K I Sbjct: 124 LNQPKVAENKSALEIGGVIVDPERRTVNVYGEQIELTPKEFDILYLLASHPKKVYNVENI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221 F ++ N V HI LRKKL +K + + +GY+ + Sbjct: 184 FQQVWADDYYEGG-NTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTFN 231 >gi|322372853|ref|ZP_08047389.1| DNA-binding response regulator VicR [Streptococcus sp. C150] gi|321277895|gb|EFX54964.1| DNA-binding response regulator VicR [Streptococcus sp. C150] Length = 236 Score = 154 bits (389), Expect = 8e-36, Method: Composition-based stats. Identities = 48/232 (20%), Positives = 94/232 (40%), Gaps = 16/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + + D+ ++ L L Sbjct: 4 ILVVDDERPISDIIKFNLTKEGYEVVTAFDGREALEQFEAENPDLVILDLML--PELDGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IR S P+I +S S + + G DD V KP +RE+LAR+ A RR + Sbjct: 62 EVAKEIRKTSHTPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARIKAHLRRTET 121 Query: 122 S------------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 G + + D + +G L RE +L +L + G+ + Sbjct: 122 IETAAAEESSNSGKKEISIGELIIVPDAFVAKKRGNEVELTHREFELLFHLATHMGQVMT 181 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + + ++G +D + V+ I +LR+K+ + + + ++R +GY + Sbjct: 182 REHLLETVWG-YDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYM 232 >gi|291537897|emb|CBL11008.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Roseburia intestinalis XB6B4] Length = 234 Score = 154 bits (389), Expect = 8e-36, Method: Composition-based stats. Identities = 34/229 (14%), Positives = 84/229 (36%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + + N E ++ ++ L G Sbjct: 7 ILIVDDDNNIAELISLYLTKECFDTKIVNDGEEALKAFEQYNPNLILLDLML--PGIDGY 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARVA 113 ++ R +RA + VP+I +S + + + G DD + KP +E + Sbjct: 65 QVCREVRAKANVPIIMLSAKGEIFDKVLGLELGADDYIMKPFDSKELVARVKAVLRRYQP 124 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + V + +P +E +L +L ++ + + Q+ Sbjct: 125 VKIEEPASELKCVKYPDLIVNLSNYSVIYKDNPIDMPPKELELLYFLASSPNQVFTREQL 184 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 I+G ++ + V+ H+ +LR+K+++ + + +GY + Sbjct: 185 LDHIWG-YEYIGDTRTVDVHVKRLREKIKDNDSWSL-STVWGIGYKFEV 231 >gi|284048184|ref|YP_003398523.1| two component transcriptional regulator, winged helix family [Acidaminococcus fermentans DSM 20731] gi|283952405|gb|ADB47208.1| two component transcriptional regulator, winged helix family [Acidaminococcus fermentans DSM 20731] Length = 232 Score = 154 bits (389), Expect = 8e-36, Method: Composition-based stats. Identities = 39/226 (17%), Positives = 85/226 (37%), Gaps = 9/226 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++ DD +++ F +G + + + D+ ++ LE Sbjct: 8 LIADDEPQIREILSIYFKKEGFKVIEAADGAEALVQVQAGKPDIILLDIM--MPVLDGLE 65 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIYR 117 + + +R S +P+I ++ S + + G DD ++KP + RE++AR Sbjct: 66 VCKQVRKISDIPIIMLTAKDSDDDRILGLEIGADDYISKPFNTREVVARVKAVLRRTNAS 125 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + E + + G +E +L L +N G ++ Q+ I Sbjct: 126 MSSQNKQVLEYPNLMINLSEYRVVAFGREITFTAKEMELLWCLASNPGIVFSRNQLLEKI 185 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSIDW 222 +G + + V++HI ++R KL + + +GY + Sbjct: 186 WG-YTYYGDTRTVDTHIKRVRHKLDIPPDSTWDIMTVWGVGYKFEV 230 >gi|242373793|ref|ZP_04819367.1| response regulator [Staphylococcus epidermidis M23864:W1] gi|242348530|gb|EES40132.1| response regulator [Staphylococcus epidermidis M23864:W1] Length = 241 Score = 154 bits (389), Expect = 8e-36, Method: Composition-based stats. Identities = 37/232 (15%), Positives = 86/232 (37%), Gaps = 14/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ + + ++ + L ++ L + Sbjct: 5 ILIVDDEDRIRRLLKLYLERESFEIHEASNGKEAYELAMENNYACILLDLML--PEMDGI 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112 E+ +R H + P+I ++ ++ F+SG DD + KP RE + Sbjct: 63 EVASKLREHKETPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQS 122 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 A + + + E + + +D E L +E +L YL K + Q Sbjct: 123 ANSEQSEPHARDIIEFNHLVIDNDAHRVLADNEQVNLTPKEYELLIYLAKTPNKVFDREQ 182 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSIDW 222 + ++ ++ + V++H+ +LR+KL + + + +GY + Sbjct: 183 LLKEVW-HYEFYGDLRTVDTHVKRLREKLNRVSNDAAQMIQTVWGVGYKFEV 233 >gi|239636841|ref|ZP_04677840.1| transcriptional regulatory protein ResD [Staphylococcus warneri L37603] gi|239597515|gb|EEQ80013.1| transcriptional regulatory protein ResD [Staphylococcus warneri L37603] Length = 241 Score = 154 bits (389), Expect = 8e-36, Method: Composition-based stats. Identities = 37/233 (15%), Positives = 81/233 (34%), Gaps = 14/233 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ + + L ++ L + Sbjct: 5 ILIVDDEDRIRRLLKLYLERESFETHEARDGKEAYQLAMENDYACILLDLML--PEMDGI 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112 E+ +R H P+I ++ ++ F+SG DD + KP RE + Sbjct: 63 EVATQLREHKDTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQT 122 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + + E + + +D E L +E +L YL K + Q Sbjct: 123 TTPEQSEPHARDVIEFNHLVIDNDAHRVLADNEQVNLTPKEYELLIYLAKTPNKVFDREQ 182 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN--KLGFDPVDSKRFLGYSIDWN 223 + ++ ++ + V++H+ +LR+KL + + +GY + N Sbjct: 183 LLKEVW-HYEFYGDLRTVDTHVKRLREKLNKVSSDAAHMIQTVWGVGYKFEVN 234 >gi|313632601|gb|EFR99591.1| transcriptional regulatory protein ResD [Listeria seeligeri FSL N1-067] gi|313637138|gb|EFS02678.1| transcriptional regulatory protein ResD [Listeria seeligeri FSL S4-171] Length = 238 Score = 154 bits (389), Expect = 8e-36, Method: Composition-based stats. Identities = 34/231 (14%), Positives = 90/231 (38%), Gaps = 14/231 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD ++ + +E + + + + +V ++ G+ +E Sbjct: 8 LVVDDEDRIRRLLKMYLERENYRIEEASDGDEALDMALNNNYEVILLDLM--MPGKDGIE 65 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARVA 113 + R +R + P++ ++ + F+ G DD + KP RE A+ Sbjct: 66 VCRELREYKSTPVVMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKAVLRRAKQT 125 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + +++ ++ V+G+ L +E +L YL + K + + Sbjct: 126 SEEGASGAPGDIITFPHLKIDNEAHRVIVEGKEIGLTPKEYDLLYYLAKSPDKVFDRESL 185 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF--DPVDSKRFLGYSIDW 222 ++ ++ + +++H+ +LR+KL + + + LGY + Sbjct: 186 LKEVW-RYEFFGDLRTIDTHVKRLREKLFDVSEDAARMIVTVWGLGYKFEV 235 >gi|229138085|ref|ZP_04266683.1| Two-component response regulator [Bacillus cereus BDRD-ST26] gi|228645430|gb|EEL01664.1| Two-component response regulator [Bacillus cereus BDRD-ST26] Length = 218 Score = 154 bits (389), Expect = 8e-36, Method: Composition-based stats. Identities = 41/222 (18%), Positives = 84/222 (37%), Gaps = 7/222 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + ++ + G + + + D ++ L Sbjct: 2 LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETNHYDFVVLDIM--MPEMDGLS 59 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRLK 120 + + IR S VP+I ++ ++ G DD + KP E+ + Sbjct: 60 VCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTKQ 119 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + GPI + R EV GE L +E +L +L + G+ ++ Q+ ++G Sbjct: 120 EQQEEFQFGPILINEKSRKIEVDGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG- 178 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D A V++H+ +R KL + + +GY + Sbjct: 179 YDYAGSTRTVDTHVKTMRLKLGESGN--YIQTVWGVGYKFEV 218 >gi|152976971|ref|YP_001376488.1| two component transcriptional regulator [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152025723|gb|ABS23493.1| two component transcriptional regulator, winged helix family [Bacillus cytotoxicus NVH 391-98] Length = 238 Score = 154 bits (389), Expect = 8e-36, Method: Composition-based stats. Identities = 43/232 (18%), Positives = 91/232 (39%), Gaps = 14/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + G + E ++ R D+ ++ L + Sbjct: 5 ILVVDDEEFILTLIEFNLQQAGFEVITAMDGEVAFQKATTERPDLIILDLML--PKMDGM 62 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILAR 111 E+ + +R P++ ++ + + G DD + KP RE + Sbjct: 63 EVCKELRLQRVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTK 122 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + N +++ + + +GE L +E +L YL N+G+ + + Sbjct: 123 LQEEQIPEVPDENSIMISELKILPEFYEAYFRGEKLELTPKEFELLVYLARNKGRVLTRD 182 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 Q+ SA++ +D A + +V+ HIS LR K+ + + + R LGY ++ Sbjct: 183 QLLSAVW-NYDFAGDTRIVDVHISHLRDKIEHNTKKPAYIKTIRGLGYKLEE 233 >gi|238925262|ref|YP_002938779.1| hypothetical protein EUBREC_2916 [Eubacterium rectale ATCC 33656] gi|238876938|gb|ACR76645.1| hypothetical protein EUBREC_2916 [Eubacterium rectale ATCC 33656] gi|291524452|emb|CBK90039.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium rectale DSM 17629] gi|291527504|emb|CBK93090.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium rectale M104/1] Length = 233 Score = 154 bits (389), Expect = 8e-36, Method: Composition-based stats. Identities = 45/230 (19%), Positives = 98/230 (42%), Gaps = 13/230 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + + N E + ++ ++ L G Sbjct: 7 ILIVDDDNNIAELISLYLTKECYDTKIVNDGEQALIAFEHYKPNMLLLDLML--PGIDGY 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R IRA S VP+I +S + + + G DD + KP +E++ARV A+ RR + Sbjct: 65 QVCREIRAKSDVPIIMLSAKGEVFDKVLGLELGADDYILKPFDSKELVARVKAVLRRFQP 124 Query: 122 SNN---------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + E + V G+ +P +E +L +L ++ + + Q Sbjct: 125 AKPEAYASVDIKCVEYPGLIVNLSNYSVTYDGQQIDMPPKELELLYFLASSPNQVFTREQ 184 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + I+G ++ + V+ H+ +LR+K+++K + + + +GY + Sbjct: 185 LLDNIWG-YEYVGDTRTVDVHVKRLREKIKDKPTWR-IATVWGIGYKFEV 232 >gi|317968518|ref|ZP_07969908.1| two-component system response regulator [Synechococcus sp. CB0205] Length = 268 Score = 154 bits (389), Expect = 8e-36, Method: Composition-based stats. Identities = 54/238 (22%), Positives = 97/238 (40%), Gaps = 19/238 (7%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD V+ + G + E L + D+ ++ L Sbjct: 26 MVVDDEPAVRRVLVMRLQLAGYQVVCAEDGEEALALFHKEQPDLVVLDVML--PKLDGFA 83 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +RA S VP+I +S ++ + D G DD + KP +E+ AR+A I RR+ Sbjct: 84 VCRRLRAESCVPIIFLSALDAIAERVAGLDLGADDYLPKPFSPKELEARIATILRRVGRG 143 Query: 123 NNRAETGPIR------------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + E + V ++ R GE L E +LE L G+ V + Sbjct: 144 SATNEPRDVPAGQGVLRVGDLVVDTNRRQVTRDGERIGLTYTEFSLLELLFREPGRVVPR 203 Query: 171 TQIFSAIYG-LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY---SIDWN 223 +I ++G A + VV+ ++++LR KL + + + + R GY + N Sbjct: 204 AEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGTGYASQRMGEN 261 >gi|206969831|ref|ZP_03230785.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|229072359|ref|ZP_04205563.1| Two component transcriptional regulator, winged helix [Bacillus cereus F65185] gi|229082107|ref|ZP_04214584.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock4-2] gi|206735519|gb|EDZ52687.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|228701203|gb|EEL53712.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock4-2] gi|228710784|gb|EEL62755.1| Two component transcriptional regulator, winged helix [Bacillus cereus F65185] Length = 232 Score = 154 bits (389), Expect = 8e-36, Method: Composition-based stats. Identities = 53/229 (23%), Positives = 85/229 (37%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A + D +G + E + + D+ ++ Sbjct: 6 ILIVDDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIETQPIDLVVLDIM--MPKMDGY 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IRA +P+I +S S + G DD + KP E++ARV A RR Sbjct: 64 EVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 123 Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 N + + R V GE L +E IL L ++ K I Sbjct: 124 LNQPKVAENKSALEIGGVIIDPERRTVNVYGEQIELTPKEFDILYLLASHPKKVYNVENI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221 F ++ N V HI LRKKL +K + + +GY+ + Sbjct: 184 FQQVWADDYYEGG-NTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTFN 231 >gi|291522756|emb|CBK81049.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Coprococcus catus GD/7] Length = 229 Score = 154 bits (389), Expect = 8e-36, Method: Composition-based stats. Identities = 44/225 (19%), Positives = 91/225 (40%), Gaps = 10/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD L+ G DG+ + + L D+ ++ L E Sbjct: 6 LVVDDEKLIVKGIKFSLEQDGMEVTAAYDGKEAYELAMQNDYDIILLDVML--PELNGFE 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH------HREILARVAAIY 116 + ++IR S VP+I ++ + + G DD V KP + + + R Sbjct: 64 VCQMIREKSDVPIIMLTAKGDDMDKILGLEYGADDYVTKPFNILEIKARIKAIIRRTKGR 123 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 ++ + + +G +R+ D R + L +E +LE L+ N K + + + Sbjct: 124 KQEQPAERTIVSGEMRIDLDSRRVFIGDREVNLTAKEFDLLELLITNPNKVFNRENLLNL 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++G +D + V+ H+ +LR+K+ + +K +GY Sbjct: 184 VWG-YDYPGDVRTVDVHVRRLREKIEASPSEPKYIHTKWGVGYFF 227 >gi|229163853|ref|ZP_04291794.1| Two component transcriptional regulator, winged helix [Bacillus cereus R309803] gi|228619595|gb|EEK76480.1| Two component transcriptional regulator, winged helix [Bacillus cereus R309803] Length = 232 Score = 154 bits (389), Expect = 8e-36, Method: Composition-based stats. Identities = 53/229 (23%), Positives = 84/229 (36%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD A + D +G + E + + D+ ++ Sbjct: 6 ILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIQVIETQPIDLVVLDIM--MPKMDGY 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IRA +P+I +S S + G DD + KP E++ARV A RR Sbjct: 64 EVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 123 Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 N + + R V GE L +E IL L ++ K I Sbjct: 124 LNQPKVAESKSALAVGGVVIDPERRTVNVYGEQVELTPKEFDILYLLASHPKKVYNVENI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221 F ++ N V HI LRKKL +K + + +GY+ + Sbjct: 184 FQQVWADDYFEGG-NTVMVHIRTLRKKLGEDKRKNKLIKTVWGVGYTFN 231 >gi|209527854|ref|ZP_03276344.1| two component transcriptional regulator, winged helix family [Arthrospira maxima CS-328] gi|209491711|gb|EDZ92076.1| two component transcriptional regulator, winged helix family [Arthrospira maxima CS-328] Length = 243 Score = 154 bits (389), Expect = 8e-36, Method: Composition-based stats. Identities = 44/228 (19%), Positives = 90/228 (39%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++ G + E + D+ ++ Sbjct: 8 ILVVDDEASIRRILETRLSMIGYDVVTAADGEEALEIFRQTEPDLVVLDVM--MPKLDGY 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAA 114 + + +R S +P+I ++ + + + G DD V KP +E+ R+ Sbjct: 66 GVCQELRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRIDK 125 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 S+ + IR+ ++ R E L E +LE L++ G+ ++++I Sbjct: 126 NGASGIPSSGVIQIASIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEIL 185 Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 ++G + V+ VV+ HIS+LR KL + + + + R GY Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLF 233 >gi|195978501|ref|YP_002123745.1| TCS response regulator VicR [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|225870885|ref|YP_002746832.1| response regulator protein [Streptococcus equi subsp. equi 4047] gi|195975206|gb|ACG62732.1| TCS response regulator VicR [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|225700289|emb|CAW94550.1| response regulator protein [Streptococcus equi subsp. equi 4047] Length = 236 Score = 154 bits (389), Expect = 8e-36, Method: Composition-based stats. Identities = 49/232 (21%), Positives = 97/232 (41%), Gaps = 16/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + + + D+ ++ L L Sbjct: 4 ILIVDDEKPISDIIKFNLTKEGYDTVTAFDGKEAVAVFEEEKPDLIILDLML--PELDGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IR S +P+I +S S + + G DD V KP +RE+LARV A RR + Sbjct: 62 EVAKEIRKTSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTET 121 Query: 122 SN------------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 G +++ D + G+ L RE +L +L + G+ + Sbjct: 122 IETAVAEENASSGSQELTIGNLQILPDAFIAKKHGQEVELTHREFELLHHLANHIGQVMT 181 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + + ++G +D + V+ I +LR+K+ + + + ++R +GY + Sbjct: 182 REHLLETVWG-YDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYM 232 >gi|312135286|ref|YP_004002624.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor owensensis OL] gi|311775337|gb|ADQ04824.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor owensensis OL] Length = 232 Score = 154 bits (389), Expect = 8e-36, Method: Composition-based stats. Identities = 40/229 (17%), Positives = 95/229 (41%), Gaps = 11/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + +G + +S + +++ D+ ++ + Sbjct: 4 ILIVDDEQHILELLKFNLRKEGYNTFEADSGVQALEILKNSKVDLVILDIM--MSDKDGY 61 Query: 62 ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AA 114 E+ + IR + P+I +S + + G DD + KP +E++ RV Sbjct: 62 EILKEIRFNRDTKNLPVILLSAKSEEIDKILGLELGADDYITKPFSVKELVVRVKALLRR 121 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + ++ + G + V R + + L +E +L+ L+ N+G+ + + I Sbjct: 122 VESLKPEVEDKVKFGDVEVDFSKRTVKKNNQDVSLSFKEFELLKLLIENKGRVLDRDFIL 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222 ++G ++ + V+ HI LR+KL + +++ R +GY + Sbjct: 182 QRVWG-YEFDGDTRTVDVHIRFLRRKLEDDEKNPRYIETVRGVGYRFNE 229 >gi|210621261|ref|ZP_03292567.1| hypothetical protein CLOHIR_00510 [Clostridium hiranonis DSM 13275] gi|210154872|gb|EEA85878.1| hypothetical protein CLOHIR_00510 [Clostridium hiranonis DSM 13275] Length = 222 Score = 154 bits (389), Expect = 8e-36, Method: Composition-based stats. Identities = 43/224 (19%), Positives = 92/224 (41%), Gaps = 9/224 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D A ++D +G +++ N D+ ++ Sbjct: 5 ILVIEDDASIQDLITEFLSAEGYNVDAANDGIEGIQKFKENNYDLIILDIM--MPNLDGY 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR--EILARVAAIYRRL 119 + ++IR S VP+I ++ L F+ DD + KP Sbjct: 63 GVCKMIRKTSSVPIIFLTALNQESDQLKGFEIECDDYITKPFSFNLLVKRVEAILRRSNK 122 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +S+N +++ D E+ G+V L +E IL+ L+ + + + + +I+G Sbjct: 123 TISDNFITFEKLKLNLDTYSAEIDGDVIELTLKEFNILKELIEKYPQVITRESLLDSIWG 182 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 +D + +V++HI +RKK+ + + + +GY++D N Sbjct: 183 -YDYYGDTRIVDAHIKNIRKKITLP----YIKTVKGIGYTLDKN 221 >gi|121535008|ref|ZP_01666826.1| two component transcriptional regulator, winged helix family [Thermosinus carboxydivorans Nor1] gi|121306421|gb|EAX47345.1| two component transcriptional regulator, winged helix family [Thermosinus carboxydivorans Nor1] Length = 231 Score = 154 bits (389), Expect = 8e-36, Method: Composition-based stats. Identities = 51/225 (22%), Positives = 91/225 (40%), Gaps = 10/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + A +G S+ D+ ++ L Sbjct: 4 LVVDDDEKILKVLTAYLEKEGYSVITARDGWEAVDKARQLGPDIVLLDVML--PSLDGWG 61 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + IR S VP+I ++ + + G DD V KP +E+LAR+ AI+RRL+ + Sbjct: 62 VCKEIRRTSDVPIIMLTARDDEADRIIGLELGADDYVIKPFSPKEVLARMRAIFRRLQPA 121 Query: 123 NNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + R I + R + G L E ++LE +A+ G+ ++ Q+ Sbjct: 122 SRRDGGERILKVGDAVLDQNSRSLTIAGTPVELTPTEYKLLELFLAHPGQVFSRLQLIEK 181 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + + E V+SHI LRKKL + + +GY + Sbjct: 182 VQD-YAFEGYERTVDSHIKNLRKKLGASPDEPHYIKTIYGVGYKL 225 >gi|89896867|ref|YP_520354.1| hypothetical protein DSY4121 [Desulfitobacterium hafniense Y51] gi|89336315|dbj|BAE85910.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 238 Score = 154 bits (389), Expect = 8e-36, Method: Composition-based stats. Identities = 45/229 (19%), Positives = 92/229 (40%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D ++++ +G ++ L + D+ ++ L L Sbjct: 8 ILLVEDDVIIQELVNYNLQREGYTVIIAEEGNSALQLLDKEKPDLVLLDVML--PELDGL 65 Query: 62 ELPRII---RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 E+ + I + + +P+I +S + + + G DD V KP RE+LAR+ A R Sbjct: 66 EVCKKIRGNQETASLPIIMLSARDEVADRVIGLELGADDYVTKPFSPRELLARIKARLRE 125 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGE----VFPLPRRERRILEYLMANRGKRVAKTQIF 174 K ++ T + L +E +L M + ++ + Sbjct: 126 EKRNSTPLPTSLTWGDLEIWPESYMVTVKGEYVTLTGKEFDLLHIFMKRPNQVFSREYLL 185 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 ++G + + + V+ HIS LR KL++ ++S R +GY + N Sbjct: 186 QKVWG-YTISGDTRTVDVHISNLRSKLKSIS--PIIESVRGVGYRLAVN 231 >gi|291562685|emb|CBL41501.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [butyrate-producing bacterium SS3/4] Length = 232 Score = 154 bits (389), Expect = 8e-36, Method: Composition-based stats. Identities = 48/228 (21%), Positives = 93/228 (40%), Gaps = 12/228 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD L+ G DG ++ + DV ++ L G E Sbjct: 5 LVVDDEKLIVKGIRFSLEQDGYEVDCAYDGDEAIERAKEREYDVVLLDVML--PGHDGFE 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + IR S++P+I ++ + + G DD + KP + E+ AR+ AI RR Sbjct: 63 VCQTIREFSEMPIIMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIIRRNNKK 122 Query: 123 NNRAETGPIRV--------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + A+ V + R ++ + L +E +LE L+ N K ++ + Sbjct: 123 SGAAKRQKSSVVTEGDLKLDRESRRVFIKDKEINLTAKEFDLLELLVTNPNKVYSRESLL 182 Query: 175 SAIYGLFD-EAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++G + + V+ H+ +LR+K+ V +K +GY Sbjct: 183 EYVWGNKAMVSGDVRTVDVHVRRLREKIEPSPSDPKYVHTKWGVGYFF 230 >gi|328957344|ref|YP_004374730.1| two-component response regulator [Carnobacterium sp. 17-4] gi|328673668|gb|AEB29714.1| two-component response regulator [Carnobacterium sp. 17-4] Length = 241 Score = 154 bits (389), Expect = 8e-36, Method: Composition-based stats. Identities = 37/229 (16%), Positives = 89/229 (38%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ + + ++ E + D+ ++ L + Sbjct: 8 LLVVDDEDRIRRLLKMYLERENYVISEADNGEDAVKMALENDYDLILLDLML--PKMDGI 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 + IR P++ ++ + ++ F+ G DD + KP RE++ RV+AI +R + Sbjct: 66 QAAEKIRESKNTPIMMLTAKGEEVSRIEGFEVGADDYIVKPFSPREVVLRVSAILKRTQS 125 Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + + + G L +E +L YL + + + Q+ Sbjct: 126 GKPKEKDNPDLIKMPHFEIDDQSHRVLADGNAVNLTPKEYDLLLYLAQSPDQIFGREQLL 185 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGF--DPVDSKRFLGYSID 221 ++ ++ + V++H+ +LR+KL + + LGY + Sbjct: 186 REVW-KYEFFGDLRTVDTHVKRLREKLTKHSEPAAKMIVTVWGLGYKFN 233 >gi|325265898|ref|ZP_08132584.1| phosphate regulon transcriptional regulatory protein PhoB [Kingella denitrificans ATCC 33394] gi|324982536|gb|EGC18162.1| phosphate regulon transcriptional regulatory protein PhoB [Kingella denitrificans ATCC 33394] Length = 229 Score = 154 bits (389), Expect = 8e-36, Method: Composition-based stats. Identities = 44/220 (20%), Positives = 92/220 (41%), Gaps = 2/220 (0%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++++D ++ + G + +++ + + D+ ++ L G Sbjct: 6 ILVVEDELPIQTLIAFNLQEAGFDVCCAQNVQAASDILRARLPDLMVLDWMLPDCDGVSW 65 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R A + +P+I ++ F G DD + KP RE++AR+ A RR Sbjct: 66 IAELRRQTATAALPIILLTARSEDADKELGFAQGADDYLTKPFSPRELVARIHARLRRAP 125 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 N G +++ + + G E ++L +LM + + ++ Q+ ++G Sbjct: 126 SGNAWRSAGRLQLNPETQRVTADGANIECSSSEFKLLHFLMTHPERVFSRRQLLDHVWGE 185 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D VEE V++ I +LR+ L + D + + R GY Sbjct: 186 -DACVEERTVDTQIGRLRRLLESAGLSDYIQTVRGSGYRF 224 >gi|229068949|ref|ZP_04202243.1| Two-component response regulator [Bacillus cereus F65185] gi|229078583|ref|ZP_04211141.1| Two-component response regulator [Bacillus cereus Rock4-2] gi|228704727|gb|EEL57155.1| Two-component response regulator [Bacillus cereus Rock4-2] gi|228714233|gb|EEL66114.1| Two-component response regulator [Bacillus cereus F65185] Length = 218 Score = 154 bits (389), Expect = 8e-36, Method: Composition-based stats. Identities = 40/222 (18%), Positives = 83/222 (37%), Gaps = 7/222 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + ++ + G + + + D ++ L Sbjct: 2 LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETNHYDFVVLDIM--MPEMDGLS 59 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRLK 120 + + IR S VP+I ++ ++ G DD + KP E+ + Sbjct: 60 VCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYTKQ 119 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + GPI + R E GE L +E +L +L + G+ ++ Q+ ++G Sbjct: 120 EQQEEIQFGPILINEKSRRIEANGESISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG- 178 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D A V++H+ +R KL + + +GY + Sbjct: 179 YDYAGSTRTVDTHVKTMRLKLGESGN--YIQTVWGVGYKFEV 218 >gi|225017711|ref|ZP_03706903.1| hypothetical protein CLOSTMETH_01640 [Clostridium methylpentosum DSM 5476] gi|224949504|gb|EEG30713.1| hypothetical protein CLOSTMETH_01640 [Clostridium methylpentosum DSM 5476] Length = 232 Score = 154 bits (389), Expect = 8e-36, Method: Composition-based stats. Identities = 44/230 (19%), Positives = 80/230 (34%), Gaps = 11/230 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D ++ + F D++ ++ G Sbjct: 5 ILVVDDEKEIADLVELYLKNENYEIYKFYDPLQALACIEEQPVDLAILDVM--MPGMDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARVA 113 L IR P++ ++ + G DD + KP H E+ Sbjct: 63 ALCAKIRDKYTFPVLMLTAKVEDIDKITGLTIGADDYITKPFHPLEMVARVKAQLRRYTC 122 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 R K ++ E + + D + G+ PL E IL L N GK ++ Q+ Sbjct: 123 YNEGRQKQNSAVIELHGLVIDKDTHTCSLYGKQLPLTPTEFSILWLLCENCGKVISSEQL 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 F I+G N V HI ++R+K+ + + +GY I+ Sbjct: 183 FHEIWGEKYFESSNNTVMVHIRRIREKMNEPARNPKFIQTVWGVGYKIEK 232 >gi|254414140|ref|ZP_05027907.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] gi|196178815|gb|EDX73812.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] Length = 245 Score = 154 bits (389), Expect = 8e-36, Method: Composition-based stats. Identities = 46/228 (20%), Positives = 96/228 (42%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++ G + E ++ D+ ++ Sbjct: 11 ILVVDDEASIRRILETRLSMIGYDVVTAADGEEALETFRTSEPDLVVLDVM--MPKLDGY 68 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 + + +R S +P+I ++ + + + G DD V KP +E+ AR+ ++ RR+ Sbjct: 69 GVCQELRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDK 128 Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 S+ I++ ++ R E L E +LE L++ G+ ++++I Sbjct: 129 VGASGIPSSGVIHVASIKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEIL 188 Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 ++G + V+ VV+ HIS+LR KL + + + + R GY Sbjct: 189 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLF 236 >gi|15924482|ref|NP_372016.1| staphylococcal respiratory response protein [Staphylococcus aureus subsp. aureus Mu50] gi|15927073|ref|NP_374606.1| respiratory response protein SrrA [Staphylococcus aureus subsp. aureus N315] gi|21283175|ref|NP_646263.1| respiratory response protein SrrA [Staphylococcus aureus subsp. aureus MW2] gi|57650448|ref|YP_186377.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp. aureus COL] gi|87161890|ref|YP_494138.1| staphylococcal respiratory response protein, SrrA [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88195297|ref|YP_500101.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148267976|ref|YP_001246919.1| two component transcriptional regulator [Staphylococcus aureus subsp. aureus JH9] gi|150394041|ref|YP_001316716.1| response regulator receiver [Staphylococcus aureus subsp. aureus JH1] gi|151221612|ref|YP_001332434.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp. aureus str. Newman] gi|156979811|ref|YP_001442070.1| staphylococcal respiratory response protein [Staphylococcus aureus subsp. aureus Mu3] gi|161509721|ref|YP_001575380.1| response regulator SrrA [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221140087|ref|ZP_03564580.1| response regulator protein [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253314860|ref|ZP_04838073.1| response regulator protein [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253733260|ref|ZP_04867425.1| response regulator [Staphylococcus aureus subsp. aureus TCH130] gi|255006278|ref|ZP_05144879.2| response regulator protein [Staphylococcus aureus subsp. aureus Mu50-omega] gi|262049079|ref|ZP_06021956.1| staphylococcal respiratory response protein SrrA [Staphylococcus aureus D30] gi|262053233|ref|ZP_06025384.1| staphylococcal respiratory response protein SrrA [Staphylococcus aureus 930918-3] gi|269203119|ref|YP_003282388.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp. aureus ED98] gi|282916758|ref|ZP_06324516.1| two-component system, OmpR family, response regulator ResD [Staphylococcus aureus subsp. aureus D139] gi|283770563|ref|ZP_06343455.1| transcriptional regulatory protein srrA [Staphylococcus aureus subsp. aureus H19] gi|284024552|ref|ZP_06378950.1| response regulator protein [Staphylococcus aureus subsp. aureus 132] gi|294848522|ref|ZP_06789268.1| response regulator protein [Staphylococcus aureus A9754] gi|295406612|ref|ZP_06816417.1| transcriptional regulatory protein srrA [Staphylococcus aureus A8819] gi|296276358|ref|ZP_06858865.1| response regulator protein [Staphylococcus aureus subsp. aureus MR1] gi|297207788|ref|ZP_06924223.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297245804|ref|ZP_06929669.1| two-component system [Staphylococcus aureus A8796] gi|297590964|ref|ZP_06949602.1| response regulator [Staphylococcus aureus subsp. aureus MN8] gi|300911869|ref|ZP_07129312.1| response regulator [Staphylococcus aureus subsp. aureus TCH70] gi|304380921|ref|ZP_07363581.1| response regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|76363418|sp|Q5HFT0|SRRA_STAAC RecName: Full=Transcriptional regulatory protein srrA; AltName: Full=Staphylococcal respiratory response protein A gi|76363419|sp|Q7A2R6|SRRA_STAAM RecName: Full=Transcriptional regulatory protein srrA; AltName: Full=Staphylococcal respiratory response protein A gi|76363420|sp|Q7A5H6|SRRA_STAAN RecName: Full=Transcriptional regulatory protein srrA; AltName: Full=Staphylococcal respiratory response protein A gi|76363421|sp|Q6GGK6|SRRA_STAAR RecName: Full=Transcriptional regulatory protein srrA; AltName: Full=Staphylococcal respiratory response protein A gi|76363422|sp|Q6G972|SRRA_STAAS RecName: Full=Transcriptional regulatory protein srrA; AltName: Full=Staphylococcal respiratory response protein A gi|76363423|sp|Q9L524|SRRA_STAAU RecName: Full=Transcriptional regulatory protein srrA; AltName: Full=Staphylococcal respiratory response protein A gi|76363424|sp|Q7A0U4|SRRA_STAAW RecName: Full=Transcriptional regulatory protein srrA; AltName: Full=Staphylococcal respiratory response protein A gi|123291792|sp|Q2FY79|SRRA_STAA8 RecName: Full=Transcriptional regulatory protein srrA; AltName: Full=Staphylococcal respiratory response protein A gi|11995653|gb|AAF70312.2|AF260326_1 SrrA [Staphylococcus aureus] gi|13701291|dbj|BAB42585.1| staphylococcal respiratory response protein SrrA [Staphylococcus aureus subsp. aureus N315] gi|14247263|dbj|BAB57654.1| staphylococcal respiratory response protein [Staphylococcus aureus subsp. aureus Mu50] gi|21204615|dbj|BAB95311.1| staphylococcal respiratory response protein SrrA [Staphylococcus aureus subsp. aureus MW2] gi|37781574|gb|AAP35031.1| SrrA [Staphylococcus aureus] gi|57284634|gb|AAW36728.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp. aureus COL] gi|87127864|gb|ABD22378.1| staphylococcal respiratory response protein, SrrA [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202855|gb|ABD30665.1| DNA-binding response regulator, putative [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147741045|gb|ABQ49343.1| two component transcriptional regulator, winged helix family [Staphylococcus aureus subsp. aureus JH9] gi|149946493|gb|ABR52429.1| response regulator receiver [Staphylococcus aureus subsp. aureus JH1] gi|150374412|dbj|BAF67672.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp. aureus str. Newman] gi|156721946|dbj|BAF78363.1| staphylococcal respiratory response protein [Staphylococcus aureus subsp. aureus Mu3] gi|160368530|gb|ABX29501.1| response regulator SrrA [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253728800|gb|EES97529.1| response regulator [Staphylococcus aureus subsp. aureus TCH130] gi|259158872|gb|EEW43965.1| staphylococcal respiratory response protein SrrA [Staphylococcus aureus 930918-3] gi|259162748|gb|EEW47313.1| staphylococcal respiratory response protein SrrA [Staphylococcus aureus D30] gi|262075409|gb|ACY11382.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp. aureus ED98] gi|269940984|emb|CBI49368.1| transcriptional regulatory protein SrrA [Staphylococcus aureus subsp. aureus TW20] gi|282319245|gb|EFB49597.1| two-component system, OmpR family, response regulator ResD [Staphylococcus aureus subsp. aureus D139] gi|283460710|gb|EFC07800.1| transcriptional regulatory protein srrA [Staphylococcus aureus subsp. aureus H19] gi|283470771|emb|CAQ49982.1| transcriptional regulatory protein ResD [Staphylococcus aureus subsp. aureus ST398] gi|285817173|gb|ADC37660.1| Staphylococcal respiratory response protein SrrA [Staphylococcus aureus 04-02981] gi|294824548|gb|EFG40971.1| response regulator protein [Staphylococcus aureus A9754] gi|294968359|gb|EFG44383.1| transcriptional regulatory protein srrA [Staphylococcus aureus A8819] gi|296887805|gb|EFH26703.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297177455|gb|EFH36707.1| two-component system [Staphylococcus aureus A8796] gi|297575850|gb|EFH94566.1| response regulator [Staphylococcus aureus subsp. aureus MN8] gi|298694776|gb|ADI97998.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp. aureus ED133] gi|300886115|gb|EFK81317.1| response regulator [Staphylococcus aureus subsp. aureus TCH70] gi|302333164|gb|ADL23357.1| two component transcriptional regulator, winged helix family [Staphylococcus aureus subsp. aureus JKD6159] gi|302751324|gb|ADL65501.1| two component transcriptional regulator, winged helix family [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340648|gb|EFM06582.1| response regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312438040|gb|ADQ77111.1| response regulator [Staphylococcus aureus subsp. aureus TCH60] gi|312829881|emb|CBX34723.1| transcriptional regulatory protein resD [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129765|gb|EFT85755.1| response regulator protein [Staphylococcus aureus subsp. aureus CGS03] gi|315195389|gb|EFU25776.1| response regulator protein [Staphylococcus aureus subsp. aureus CGS00] gi|315198817|gb|EFU29145.1| response regulator protein [Staphylococcus aureus subsp. aureus CGS01] gi|320140624|gb|EFW32478.1| response regulator receiver domain protein [Staphylococcus aureus subsp. aureus MRSA131] gi|320144160|gb|EFW35929.1| response regulator receiver domain protein [Staphylococcus aureus subsp. aureus MRSA177] gi|329314170|gb|AEB88583.1| Transcriptional regulatory protein srrA [Staphylococcus aureus subsp. aureus T0131] gi|329725283|gb|EGG61770.1| transcriptional regulatory protein ResD [Staphylococcus aureus subsp. aureus 21189] gi|329727544|gb|EGG64000.1| transcriptional regulatory protein ResD [Staphylococcus aureus subsp. aureus 21172] gi|329730829|gb|EGG67207.1| transcriptional regulatory protein ResD [Staphylococcus aureus subsp. aureus 21193] Length = 241 Score = 154 bits (389), Expect = 8e-36, Method: Composition-based stats. Identities = 35/232 (15%), Positives = 85/232 (36%), Gaps = 14/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ + + ++ + L ++ L + Sbjct: 5 ILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLML--PEMDGI 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112 ++ +R H Q P+I ++ ++ F+SG DD + KP RE + Sbjct: 63 QVATKLREHKQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQS 122 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + + + E + + +D + L +E +L YL K + Q Sbjct: 123 TTVEQSEPHARDVIEFKHLEIDNDAHRVLADNQEVNLTPKEYELLIYLAKTPNKVFDREQ 182 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKL--GFDPVDSKRFLGYSIDW 222 + ++ ++ + V++H+ +LR+KL + + +GY + Sbjct: 183 LLKEVW-HYEFYGDLRTVDTHVKRLREKLNRVSSEAAHMIQTVWGVGYKFEV 233 >gi|167461324|ref|ZP_02326413.1| two-component response regulator [Paenibacillus larvae subsp. larvae BRL-230010] gi|322381342|ref|ZP_08055345.1| two-component response regulator YycG-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154918|gb|EFX47189.1| two-component response regulator YycG-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 282 Score = 154 bits (389), Expect = 9e-36, Method: Composition-based stats. Identities = 40/230 (17%), Positives = 87/230 (37%), Gaps = 14/230 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + L S + D+ ++ L + + Sbjct: 48 ILVVDDEQPIADILKFNLEKEGYEVICAYDGGTAVELAFSEKPDLILLDLML--PVKDGM 105 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI----------HHREILAR 111 ++ R +R P+I ++ + + + G DD V KP H + Sbjct: 106 DVCREVRGKLNTPIIMLTAKDTEIDKVLGLEMGADDYVTKPFGTRELLARVKAHLRRQIK 165 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 A K + + +D G+ L RE ++ YL + K + + Sbjct: 166 SEAAPEVAKEEPQGIRLDTLFIDTDMYVVYKDGDPLDLTHREFELIYYLAKHPSKVMTRE 225 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + A++G ++ + V+ I +LR+K+ + + + ++R LGY + Sbjct: 226 HLLQAVWG-YEYFGDVRTVDVTIRRLREKIETDPSKPEYIVTRRGLGYMM 274 >gi|312115104|ref|YP_004012700.1| two component transcriptional regulator PhoB, winged helix family [Rhodomicrobium vannielii ATCC 17100] gi|311220233|gb|ADP71601.1| two component transcriptional regulator PhoB, winged helix family [Rhodomicrobium vannielii ATCC 17100] Length = 236 Score = 154 bits (389), Expect = 9e-36, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 90/224 (40%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G S+ + E D+ ++ L G + Sbjct: 5 ILIVEDEEALALLLQYNLEAEGFSVSISQRGDEAEVAIGEEPPDLIILDWML--PGLSGI 62 Query: 62 ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIY 116 EL R +RA +P++ ++ + G DD V KP E+ + Sbjct: 63 ELCRRLRAGKTARTIPILLLTARGEETDRIRGLTVGADDYVVKPFSVPELLARVKAILRR 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + E I + + G L E ++LE+LM + G+ ++TQ+ Sbjct: 123 AAPERISQTLEVEDIELDRETYRVMRSGREVRLGPTEFKLLEFLMESPGRVFSRTQLLDG 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G D V+E V+ HI +LRK + DP+ + R GY++ Sbjct: 183 VWGR-DVYVDERTVDVHIGRLRKAINRGKEKDPIRTVRGAGYAL 225 >gi|302541878|ref|ZP_07294220.1| DNA-binding response regulator ResD [Streptomyces hygroscopicus ATCC 53653] gi|302459496|gb|EFL22589.1| DNA-binding response regulator ResD [Streptomyces himastatinicus ATCC 53653] Length = 262 Score = 154 bits (389), Expect = 9e-36, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 81/235 (34%), Gaps = 20/235 (8%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD V + G +++ + D+ ++ L G L+ Sbjct: 11 LVVDDDPTVAEVVAGYLTRAGFAVDRAADGPGALARADAQWPDLVVLDLML--PGMDGLD 68 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI-------------- 108 + R +R VP+I ++ + + G DD V KP RE+ Sbjct: 69 VCRALRGKGPVPVIMLTARGDEDDRILGLEIGADDYVTKPFSPRELVLRVESVLRRGRTG 128 Query: 109 -LARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167 A + + I + R G L RE +L +L+ + G Sbjct: 129 PRASAGVRSHAPERPDPVLRRAGITLDPTARRATKDGRELALTLREFDLLAFLLRHPGVA 188 Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 + ++ ++G + + V H+ +LR K+ + + + +GY D Sbjct: 189 CTREELMRDVWGWD--FGDLSTVTVHVRRLRGKIEDDPAAPRLIQTVWGVGYRFD 241 >gi|170744715|ref|YP_001773370.1| two component transcriptional regulator [Methylobacterium sp. 4-46] gi|168198989|gb|ACA20936.1| two component transcriptional regulator, winged helix family [Methylobacterium sp. 4-46] Length = 234 Score = 154 bits (389), Expect = 9e-36, Method: Composition-based stats. Identities = 50/226 (22%), Positives = 95/226 (42%), Gaps = 8/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G +++ + + D+ ++ + G + Sbjct: 5 ILIVEDEEPLTLLLRYNLEAEGFTVDAVARGDEADIRLREQVPDLVLLDWMV--PGLSGI 62 Query: 62 ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IY 116 EL R IRA + P+I ++ + +G DD + KP E+LARV A Sbjct: 63 ELCRRIRARRETERLPVIMLTARGEEGDRVRGLATGADDYIVKPFSVPELLARVRALLRR 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + G I + +G L E ++LE+LM + G+ ++ Q+ Sbjct: 123 AKPAHVAHLLVAGDIELDRVSHRVRREGRELHLGPTEFKLLEFLMQSPGRVFSREQLLDG 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 ++G D ++E V+ HI +LRK + DP+ + R GYS D Sbjct: 183 VWG-HDVYIDERTVDVHIGRLRKAINRPRRPDPIRTVRGSGYSFDE 227 >gi|289579453|ref|YP_003478080.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter italicus Ab9] gi|289529166|gb|ADD03518.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter italicus Ab9] Length = 231 Score = 154 bits (389), Expect = 9e-36, Method: Composition-based stats. Identities = 41/224 (18%), Positives = 92/224 (41%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + +G E + D+ ++ L Sbjct: 5 ILIVDDEKPIVEIIKYNLEKEGYITYEAYDGEEALKIAKEQNPDLIILDVML--PKLDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R +R +P++ ++ + + G DD + KP RE++ARV A RR+ + Sbjct: 63 SVLRTLRQSMTIPILMLTAKEEEVDKVLGLELGADDYITKPFSIRELIARVKANLRRISL 122 Query: 122 SNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + N + +++ E + L RE +L++L+ N+G ++ + + Sbjct: 123 NGNESGNVLCVKNLKIDMSKYKVEKNNKEVELTSREFELLKFLVLNKGLIFSREMLLEKV 182 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 +G ++ + V+ I +LR+K+ + + +KR +GY Sbjct: 183 WG-YEYLGDIRTVDVTIRRLREKIEDDPSNPKLIHTKRGVGYYF 225 >gi|15896467|ref|NP_349816.1| response regulator [Clostridium acetobutylicum ATCC 824] gi|15026293|gb|AAK81156.1|AE007818_2 Response regulator (CheY-like receiver domain and HTH-type DNA-binding domain) [Clostridium acetobutylicum ATCC 824] gi|325510625|gb|ADZ22261.1| Response regulator (CheY-like receiver domain and HTH-type DNA-binding domain) [Clostridium acetobutylicum EA 2018] Length = 228 Score = 154 bits (389), Expect = 9e-36, Method: Composition-based stats. Identities = 42/223 (18%), Positives = 93/223 (41%), Gaps = 7/223 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + G + + N + + + + D+ ++ L E ++ Sbjct: 9 LIVDDDENICEVIKLYLESSGYATKISNDGKSAQNVFVEYKPDIVLLDIML--PQEDGID 66 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRRL 119 + + IR P+I ++ + + G DD + KP +E++ARV Sbjct: 67 VLKWIRKADNTPVIMLTAKGETFDKVLTLELGADDYIVKPFEPKELVARVKAVLRRANSE 126 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 VS+ +++ + +P +E +L YL N+ K + Q+ ++G Sbjct: 127 NVSSQVLNFNGLKIDMGSYTVIYNEKDIKMPPKEFELLYYLANNKNKVFTREQLLCEVWG 186 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D + V+ H+ +LR+KL G+D + + +GY + Sbjct: 187 -YDYPGDSRTVDVHVKRLREKLHEGNGWD-IQTVWGVGYKFEV 227 >gi|324325416|gb|ADY20676.1| response regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 223 Score = 154 bits (389), Expect = 9e-36, Method: Composition-based stats. Identities = 41/222 (18%), Positives = 84/222 (37%), Gaps = 7/222 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + ++ + G + + + D ++ L Sbjct: 7 LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETNHYDFVVLDIM--MPEMDGLS 64 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRLK 120 + + IR S VP+I ++ ++ G DD + KP E+ + Sbjct: 65 VCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTKQ 124 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + GPI + R EV GE L +E +L +L + G+ ++ Q+ ++G Sbjct: 125 EQQEEFQFGPILINEKSRKIEVDGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG- 183 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D A V++H+ +R KL + + +GY + Sbjct: 184 YDYAGSTRTVDTHVKTMRLKLGESGN--YIQTVWGVGYKFEV 223 >gi|229541515|ref|ZP_04430575.1| two component transcriptional regulator, winged helix family [Bacillus coagulans 36D1] gi|229325935|gb|EEN91610.1| two component transcriptional regulator, winged helix family [Bacillus coagulans 36D1] Length = 230 Score = 154 bits (389), Expect = 9e-36, Method: Composition-based stats. Identities = 47/227 (20%), Positives = 95/227 (41%), Gaps = 10/227 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + G + + + DV ++ L G ++ Sbjct: 6 LVVDDEPSIVTLLKFNLEQAGFEVLTASDGNEGYDTARKEKLDVIILDLML--PGMDGMD 63 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + +R P++ ++ + + G DD + KP RE++ARV AI RR + Sbjct: 64 VCKQLRLGKINTPILMLTAKSDELDKILGLELGADDYITKPFSPREVVARVKAILRRAET 123 Query: 122 SNNRAETGPI-----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 I R+ + + + + L +E +L YL + GK +++ Q+ +A Sbjct: 124 KTEEETAEAIKVGDLRILPEQFEAYFKEKKLELTPKEFELLLYLANHAGKVLSRDQLLNA 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDW 222 ++ FD A + +V+ HIS LR+K+ + + R GY ++ Sbjct: 184 VW-NFDFAGDTRIVDVHISHLREKMEEDTKQPQYIKTVRGFGYKMEV 229 >gi|289435296|ref|YP_003465168.1| DNA-binding response regulator ResD [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171540|emb|CBH28086.1| DNA-binding response regulator ResD [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 238 Score = 154 bits (389), Expect = 9e-36, Method: Composition-based stats. Identities = 34/231 (14%), Positives = 89/231 (38%), Gaps = 14/231 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD ++ + +E + + + + +V ++ G+ +E Sbjct: 8 LVVDDEDRIRRLLKMYLERENYRIEEASDGDEALDMALNNNYEVILLDLM--MPGKDGIE 65 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARVA 113 + R +R + P++ ++ + F+ G DD + KP RE A+ Sbjct: 66 VCRELREYKSTPVVMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKAVLRRAKQT 125 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + +++ ++ V G+ L +E +L YL + K + + Sbjct: 126 SEEGASGAPGDIITFPHLKIDNEAHRVIVDGKEIGLTPKEYDLLYYLAKSPDKVFDRESL 185 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLG--FDPVDSKRFLGYSIDW 222 ++ ++ + +++H+ +LR+KL + + + LGY + Sbjct: 186 LKEVW-RYEFFGDLRTIDTHVKRLREKLFDVSEDAARMIVTVWGLGYKFEV 235 >gi|170077600|ref|YP_001734238.1| two-component DNA binding response regulator [Synechococcus sp. PCC 7002] gi|169885269|gb|ACA98982.1| Two-component DNA binding response regulator [Synechococcus sp. PCC 7002] Length = 242 Score = 154 bits (389), Expect = 9e-36, Method: Composition-based stats. Identities = 48/228 (21%), Positives = 90/228 (39%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++ G + E A D+ ++ Sbjct: 8 ILVVDDEASIRRILETRLSMIGYEVVTAADGEEALATFDEADPDLVVLDVM--MPKLDGY 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAA 114 + + +R S VP+I ++ + + + G DD V KP +E+ RV Sbjct: 66 GVCQELRKESDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVEK 125 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 S+ G IR+ ++ R E L E +LE L++ G+ ++++I Sbjct: 126 NGGTGIPSSGVIHVGSIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEIL 185 Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 ++G + V+ VV+ HIS+LR KL + + + + R GY Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLF 233 >gi|209883802|ref|YP_002287659.1| phosphate regulon transcriptional regulatory protein PhoB [Oligotropha carboxidovorans OM5] gi|209871998|gb|ACI91794.1| phosphate regulon transcriptional regulatory protein PhoB [Oligotropha carboxidovorans OM5] Length = 234 Score = 154 bits (389), Expect = 9e-36, Method: Composition-based stats. Identities = 50/225 (22%), Positives = 94/225 (41%), Gaps = 8/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G +E + + D+ ++ L G + Sbjct: 5 ILVVEDEEALATLLRYNLDAEGYDVETVARGDEADTRLKERVPDLVVLDWML--PGLSGI 62 Query: 62 ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IY 116 EL R +RA + P+I ++ + +G DD + KP E+LARV Sbjct: 63 ELCRRLRARPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLLRR 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + G I + + R G L E R+LE+ + + G+ ++ Q+ Sbjct: 123 ASPERVASVLIYGDIELDREKRRVARSGRPIDLGPTEYRLLEFFLQHPGRVFSREQLLDG 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G D ++E V+ HI +LRK L DP+ + R GY++D Sbjct: 183 VWGR-DIYIDERTVDVHIGRLRKLLNPGEEQDPIRTVRGAGYALD 226 >gi|108805802|ref|YP_645739.1| two component transcriptional regulator [Rubrobacter xylanophilus DSM 9941] gi|108767045|gb|ABG05927.1| two component transcriptional regulator, winged helix family [Rubrobacter xylanophilus DSM 9941] Length = 225 Score = 154 bits (389), Expect = 9e-36, Method: Composition-based stats. Identities = 44/220 (20%), Positives = 82/220 (37%), Gaps = 5/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + G + E R DV ++ L G + Sbjct: 7 ILVVEDDPSIARLLQLELEHRGYEVCCAADGEEGLAAFERLRPDVVVLDIML--PGMDGV 64 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R +R P+I ++ + + D G DD + KP E+ R Sbjct: 65 GVLRRLREAGHRTPVIMLTARDATGDKVHSLDRGADDYLTKPFEVEEL-LARMRAVLRRV 123 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 G + V + R+ G L RE +LE L N + +++ +I ++G Sbjct: 124 EGEEVLRVGSLTVDTSAREVRRGGRAVALTAREYDLLELLARNGRRVLSREKILDRVWGE 183 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 V+ NVV+ ++ LR+KL + + R +GY + Sbjct: 184 G-AGVDPNVVDVYVGYLRRKLEGPGEGRLIHTVRGVGYVL 222 >gi|89896435|ref|YP_519922.1| hypothetical protein DSY3689 [Desulfitobacterium hafniense Y51] gi|89335883|dbj|BAE85478.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 232 Score = 154 bits (389), Expect = 9e-36, Method: Composition-based stats. Identities = 49/230 (21%), Positives = 90/230 (39%), Gaps = 11/230 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D ++ +L F + + + D++ ++ L Sbjct: 5 ILIVDDEQAIADLVEVYLKNENYNLFKFYNGKDALDCIEKEKLDLAILDVML--PDVDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R IR P+I ++ + G DD + KP E++ARV A RR Sbjct: 63 SICRQIREKHNFPVIMLTAKEEEIDKITGLTLGADDYITKPFRPLELIARVKAQLRRFTK 122 Query: 122 SNNRAETGPIRV--------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 N+ V D + + + L E IL L +NRG+ V+ ++ Sbjct: 123 YNSAEPNQEEHVIAFSGLVLDMDTHECTLNEKKLSLTPTEFSILWVLCSNRGRVVSSEEL 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDW 222 FS ++G N V HI LR+K+++ + + +GY I+ Sbjct: 183 FSEVWGDKYFTNSNNTVMVHIRHLREKMQDSAEHPKYIKTVWGVGYKIEK 232 >gi|320012489|gb|ADW07339.1| two component transcriptional regulator, winged helix family [Streptomyces flavogriseus ATCC 33331] Length = 275 Score = 154 bits (389), Expect = 9e-36, Method: Composition-based stats. Identities = 46/224 (20%), Positives = 86/224 (38%), Gaps = 8/224 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD V + G G + + ++ R D+ ++ L G G E Sbjct: 46 LVVDDDPTVAEVAAGYLGRAGYDVGRADDGPAALESVAALRPDLVVLDLMLPG-GMDGFE 104 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYRR 118 + R IRA VP+I ++ + ++G DD V KP R + A + R Sbjct: 105 VCRRIRARGPVPVIMLTARGDEDDRILGLETGADDYVTKPFSPRELVLRVEAVLRRWRRT 164 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + I + R GE L RE +L + + N G+ + ++ ++ Sbjct: 165 EPGPSAGIGGAGIVLEPLARRATRGGEDLCLTLREFDLLAFFLRNPGRAYTREELMREVW 224 Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 G + + V H+ +LR K+ + + + +GY D Sbjct: 225 GWD--FGDLSTVTVHVRRLRGKVETDPARPALIQTVWGVGYRFD 266 >gi|206967625|ref|ZP_03228581.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|206736545|gb|EDZ53692.1| DNA-binding response regulator [Bacillus cereus AH1134] Length = 223 Score = 154 bits (389), Expect = 9e-36, Method: Composition-based stats. Identities = 40/222 (18%), Positives = 83/222 (37%), Gaps = 7/222 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + ++ + G + + + D ++ L Sbjct: 7 LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETNHYDFVVLDIM--MPEMDGLS 64 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRLK 120 + + IR S VP+I ++ ++ G DD + KP E+ + Sbjct: 65 VCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYTKQ 124 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + GPI + R E GE L +E +L +L + G+ ++ Q+ ++G Sbjct: 125 EQQEEIQFGPILINEKSRRIEANGESISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG- 183 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D A V++H+ +R KL + + +GY + Sbjct: 184 YDYAGSTRTVDTHVKTMRLKLGESGN--YIQTVWGVGYKFEV 223 >gi|117619543|ref|YP_855794.1| phosphate regulon transcriptional regulatory protein PhoB [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560950|gb|ABK37898.1| phosphate regulon transcriptional regulatory protein PhoB [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 229 Score = 154 bits (389), Expect = 9e-36, Method: Composition-based stats. Identities = 34/222 (15%), Positives = 91/222 (40%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D A +++ + G ++ ++ + G G + Sbjct: 5 ILVVEDEAPIREMLCFVLEQKGYETVEAEDFADGLAKVREPYPELIVLDWMMPGGSGIQF 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ + Q+P++ ++ + + ++G DD + KP +E+ AR+ A+ RR+ Sbjct: 65 IKQLKQDEVTRQIPVVMLTARGEEEDKVRGLEAGADDYITKPFSPKELTARLHAVMRRVS 124 Query: 121 VSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++ ++ + + + E ++L + M + + ++ Q+ + ++ Sbjct: 125 PTSVDEVIEVQGLKLDPVSHRVSAEEKALDMGPTEFKLLHFFMTHPERVYSREQLLNNVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G + VE+ V+ HI +LRK + + + R GY Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKAIEETGHDRLIQTVRGAGYRF 225 >gi|303232491|ref|ZP_07319179.1| putative Sensory transduction protein regX3 [Atopobium vaginae PB189-T1-4] gi|302481415|gb|EFL44487.1| putative Sensory transduction protein regX3 [Atopobium vaginae PB189-T1-4] Length = 240 Score = 154 bits (389), Expect = 9e-36, Method: Composition-based stats. Identities = 42/225 (18%), Positives = 90/225 (40%), Gaps = 8/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D +++ A +G + G + D+ ++ L Sbjct: 8 ILLVEDEKTIREAVSAYLEREGYFVRGVGDGQNALEEFEKHSFDLIILDLML--PKLSGE 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYR 117 + R +R S VP+I ++ ++ + + G DD + KP RE++ARV + Sbjct: 66 RVCRAVRETSNVPIIMLTAKGEVEDRIIGLELGADDYLIKPFSPRELVARVRALLRRAHS 125 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + + G + + G V+ + L E ++L L G+ + ++ + Sbjct: 126 EAEPALEVLDFGQLVIDISGHKVLVENKEIDLTASEFKLLTTLARYPGRVYTRMELVEKV 185 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 G +D E ++SH+ LR KL + + + +GY + Sbjct: 186 LG-YDFEGYERTIDSHVKNLRAKLGDDPRNPRWLYTVHGVGYRFE 229 >gi|318040600|ref|ZP_07972556.1| two-component response regulator [Synechococcus sp. CB0101] Length = 253 Score = 154 bits (389), Expect = 9e-36, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 94/228 (41%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++ G + + D+ ++ Sbjct: 16 ILVVDDEASIRRILETRLSMIGYQVVTACDGQEALEAFRRTDPDLVVLDVM--MPKLDGY 73 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 + + +R S VP++ ++ + + + G DD V KP +E+ AR+ + RR++ Sbjct: 74 GVCQELRKESDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRVEK 133 Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 ++ + G +R+ ++ R E L E +LE L+ G+ ++ +I Sbjct: 134 DSVAGIPNSGVIQVGDLRIDTNKRQVYRGEERIRLTGMEFSLLELLVGRSGEPFSRGEIL 193 Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 ++G + V+ VV+ HIS+LR KL + + + + R GY Sbjct: 194 KEVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGYLF 241 >gi|217076267|ref|YP_002333983.1| DNA-binding response regulator [Thermosipho africanus TCF52B] gi|217036120|gb|ACJ74642.1| DNA-binding response regulator [Thermosipho africanus TCF52B] Length = 239 Score = 154 bits (389), Expect = 9e-36, Method: Composition-based stats. Identities = 51/230 (22%), Positives = 96/230 (41%), Gaps = 14/230 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD+ + + +G + E D+ ++ L G Sbjct: 6 IMVIDDQPEILELISFTLEKEGYEVVPVEDAEKALEEIKDKEIDMFLVDIML--PGMDGF 63 Query: 62 ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 E R IR + P+I +S + + G DD + KP RE+LAR+ A++RR Sbjct: 64 EFVRNIRSQEKYKSTPVIFLSAKGEEFDKVLGLELGADDYITKPFSIRELLARIKAVFRR 123 Query: 119 LKVSNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 +++S E P + + D + +++G+ L E +L +L N GK ++ Sbjct: 124 MQLSTQVKEEKPKKIVAKDLEIDVDKYEVKIKGKKVNLTPLEFDLLRFLAENEGKVFSRN 183 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220 + ++G +D + V+ HI +LR K+ + + + R GY Sbjct: 184 VLLDKLWG-YDYFGDTRTVDVHIRRLRTKIEEDPSNPKYIVTVRGKGYKF 232 >gi|307265327|ref|ZP_07546884.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter wiegelii Rt8.B1] gi|306919611|gb|EFN49828.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter wiegelii Rt8.B1] Length = 225 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 53/222 (23%), Positives = 104/222 (46%), Gaps = 6/222 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++I+D ++D ++G + + + ++ +D+S I ++ Sbjct: 5 LVIEDEEGMRDILKTYLENNGYEVLVAENGKAGLEYFNNNNKDISIILLDIMLPDISGWS 64 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRRL 119 L + IR S+VP++ I+ L F+ G DD V KP +E++ARV + Sbjct: 65 LLKTIREKSKVPVMMITARGEEYDKLLGFELGADDYVVKPFSPKEVIARVKAILSRTYGA 124 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + E I + R+ V GE L +E +L+ L+ N+GK V++ + + ++G Sbjct: 125 SEEDGKTEYEGISINVSSREVTVDGEKIDLTPKEFDLLKLLIDNKGKVVSREKCLNEVWG 184 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +D + V++HI +LR+KL K + + +GY +D Sbjct: 185 -YDFYGDLRTVDTHIKQLREKLGEK--RKLIKTVWGIGYKLD 223 >gi|116071684|ref|ZP_01468952.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. BL107] gi|116065307|gb|EAU71065.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. BL107] Length = 255 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 54/230 (23%), Positives = 94/230 (40%), Gaps = 16/230 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD A V+ + G + E L S D+ ++ L Sbjct: 16 LVVDDEAAVRRVLVMRLQLSGYRVVCAEDGEQALELFHSESPDLIVLDVML--PKLDGFA 73 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119 + R +RA S VP+I +S ++ + D G DD + KP +E+ AR+A I RR+ Sbjct: 74 VCRRLRAESCVPIIFLSAVEAISERVAGLDLGADDYLPKPFSPKELEARIATILRRVGRG 133 Query: 120 ---------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 G + V ++ R E L E +LE L + G V + Sbjct: 134 NAVVESRELPTGQGVLCLGELVVDTNRRQVTRGSERINLTYTEFSLLELLFRDPGHVVPR 193 Query: 171 TQIFSAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGY 218 +I ++G A + VV+ ++++LR KL + + + R +GY Sbjct: 194 AEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 243 >gi|86607308|ref|YP_476071.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab] gi|86555850|gb|ABD00808.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab] Length = 230 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 45/221 (20%), Positives = 87/221 (39%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D A + G + D+ ++ L G L Sbjct: 11 ILVIEDEAKLARFLETELAYRGYRVSVVGDGTVALAAARDQNPDLVLLDWML--PGISGL 68 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +R P++ ++ + + D+G DD V KP +E+LAR+ + K Sbjct: 69 EVCRQLRLTGNRVPVVLMTASDEVADRVAGLDAGADDYVVKPFSLQELLARIRIYLQPPK 128 Query: 121 VSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S + + + R L +E +L YLM + + + + QI ++G Sbjct: 129 GSGDSRLVFMDLTLDPVTRQASRGERQVELTAKEYDLLRYLMEHPRQVLTRQQILEHVWG 188 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D + N++E +I LR K+ + + R +GY + Sbjct: 189 -YDFTGDSNIIEVYIRYLRLKIEGPGEKRLIQTVRGVGYVL 228 >gi|150016605|ref|YP_001308859.1| two component transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149903070|gb|ABR33903.1| two component transcriptional regulator, winged helix family [Clostridium beijerinckii NCIMB 8052] Length = 225 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 50/225 (22%), Positives = 91/225 (40%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQS-SAREDVSAIEAFLIGKGEKV 60 +++DD L++ G + + L S D+ ++ L Sbjct: 6 ILVVDDEPLIRKLVTDFLKKQGYVTIEADDGKKAMNLFSNEENIDLIILDVML--PEYDG 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117 + R IR S+VP+I ++ + D G D+ ++KP ++ARV Sbjct: 64 FTVCREIRKKSKVPIIMLTARGEEFDEVFGLDIGADEYISKPFSPNILIARVNAVLRRAN 123 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + + + GEV L +E +L YL N GK +++ QI + Sbjct: 124 SEDKGKELKDFNGLTIDHSAHQVVIDGEVVDLSPKEYELLIYLSENYGKALSREQILDKV 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +G +D + V++HI++LR KL K D + + R GY + Sbjct: 184 WG-YDYYGDLRTVDTHINRLRIKLDRKS--DYIQTVRGYGYRFEE 225 >gi|308070894|ref|YP_003872499.1| regulatory protein vanR [Paenibacillus polymyxa E681] gi|305860173|gb|ADM71961.1| Regulatory protein vanR [Paenibacillus polymyxa E681] Length = 226 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 44/226 (19%), Positives = 86/226 (38%), Gaps = 9/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + ++D ++G + E + + ++ + Sbjct: 4 ILVVDDDSEIRDVIHVYLRNEGYHVIEAADGEEALDAIKTTSIQLVILDVM--MPRMDGI 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 IR S P+I +S ++ +G DD + KP + E+LARV A RR Sbjct: 62 RACLKIREISNTPIIMLSAKEEDIDKINGLTTGADDYMIKPFNPLELLARVKAQLRRQAL 121 Query: 120 ---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + N+ + + +++G L E IL L ++ G+ + I+ Sbjct: 122 IGKEEFNSLIIIKDLSIDKSKHSVKLKGNEISLTPLEFAILVLLASHPGQVFSSEHIYEN 181 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 ++ +N V HI LR+KL + + +GY I+ Sbjct: 182 VWKAP-YGFSDNTVMVHIRNLREKLEQFPRDPLYIKTVWGVGYKIE 226 >gi|225378771|ref|ZP_03755992.1| hypothetical protein ROSEINA2194_04441 [Roseburia inulinivorans DSM 16841] gi|225209363|gb|EEG91717.1| hypothetical protein ROSEINA2194_04441 [Roseburia inulinivorans DSM 16841] Length = 217 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 45/220 (20%), Positives = 101/220 (45%), Gaps = 7/220 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D +++G ++ + E + S ++ ++ L + + Sbjct: 3 ILIVEDDTAIREGVAEFLKENEYEVFCAEDGEKALEILKSKEIHLALLDIML--PKKNGI 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + +R S++P+I ++ +T + FD+ DD + KP +L R+ A+ R Sbjct: 61 EVLKELRTFSELPVIMLTAVTDEETQVQTFDNLADDYICKPFSLILLLKRIEALLRARYK 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + N + V G G+ + +E ++L L+ N G+ V++ QI I+G Sbjct: 121 TENTWKYKDAVVDFSGYRATYLGKDAAVTPKEIKLLAVLLENAGQVVSRDQILDRIWGEE 180 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + VV+ ++ LRKKL+ D + + + +GY ++ Sbjct: 181 ESPFD-RVVDVYVKNLRKKLQL----DCIITVKGVGYKLE 215 >gi|166030475|ref|ZP_02233304.1| hypothetical protein DORFOR_00136 [Dorea formicigenerans ATCC 27755] gi|166029727|gb|EDR48484.1| hypothetical protein DORFOR_00136 [Dorea formicigenerans ATCC 27755] Length = 234 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 38/231 (16%), Positives = 85/231 (36%), Gaps = 14/231 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + + E + ++ ++ L G Sbjct: 7 ILIVDDDEAIAELVSLYLAKECFDTMMVHDGEKALVAFDTYHPNLVLLDLML--PGIDGY 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILAR 111 ++ R IRA + P+I +S + + + G DD + KP + Sbjct: 65 QVCREIRARANTPIIMLSAKGEVFDKVLGLELGADDYIMKPFDSKELVARVKAVLRRYQA 124 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 V E I + V G+ +P +E +L +L ++ + + Sbjct: 125 VPKPEVPAVDKGKCVEYPGIEINLTNYSVLVDGQNVEMPPKELELLYFLASSPNQVFTRE 184 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 Q+ I+G ++ + V+ HI +LR+K+++ G+ + +GY + Sbjct: 185 QLLDQIWG-YEYIGDTRTVDVHIKRLREKIKDHNGWKL-ATVWGIGYKFEV 233 >gi|147676478|ref|YP_001210693.1| response regulator [Pelotomaculum thermopropionicum SI] gi|146272575|dbj|BAF58324.1| response regulator [Pelotomaculum thermopropionicum SI] Length = 233 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 43/229 (18%), Positives = 82/229 (35%), Gaps = 12/229 (5%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + +++DD +V++ +G + L + + D+ ++ L G Sbjct: 5 LILVVDDEEVVRELVRHCLVREGFKVITTADAYGAFDLIARLKPDLIILDILL--PGLDG 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR--------EILARV 112 +E R +R ++VP+I +S + G DD + KP + Sbjct: 63 IEFCRKLRMKNEVPVIFLSAKGDSSDIILGLGVGGDDYIVKPFVPGELVARVKARLRRLK 122 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + + +G V G L +E IL L N + Q Sbjct: 123 PGEETAAGREPKMLKYRGLEIDLEGHAVLVDGSAVALAPKEFEILALLAKNPNRVFKNEQ 182 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + I+ D A + + HIS+LRKK+ + + + R +GY Sbjct: 183 LLDLIWQSKDFA-DNRTLMVHISRLRKKIEKDPNNPAYIQTVRGVGYKF 230 >gi|257425615|ref|ZP_05602039.1| response regulator protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257428276|ref|ZP_05604674.1| response regulator protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257430913|ref|ZP_05607293.1| response regulator protein [Staphylococcus aureus subsp. aureus 68-397] gi|257433602|ref|ZP_05609960.1| response regulator protein [Staphylococcus aureus subsp. aureus E1410] gi|257436515|ref|ZP_05612559.1| response regulator protein [Staphylococcus aureus subsp. aureus M876] gi|282914297|ref|ZP_06322083.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp. aureus M899] gi|282924591|ref|ZP_06332259.1| two-component system, OmpR family, response regulator ResD [Staphylococcus aureus subsp. aureus C101] gi|293503374|ref|ZP_06667221.1| two-component system, OmpR family, response regulator ResD [Staphylococcus aureus subsp. aureus 58-424] gi|293510389|ref|ZP_06669095.1| two-component system, OmpR family, response regulator ResD [Staphylococcus aureus subsp. aureus M809] gi|293530928|ref|ZP_06671610.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp. aureus M1015] gi|257271309|gb|EEV03455.1| response regulator protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257275117|gb|EEV06604.1| response regulator protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257278343|gb|EEV08979.1| response regulator protein [Staphylococcus aureus subsp. aureus 68-397] gi|257281695|gb|EEV11832.1| response regulator protein [Staphylococcus aureus subsp. aureus E1410] gi|257283866|gb|EEV13989.1| response regulator protein [Staphylococcus aureus subsp. aureus M876] gi|282313426|gb|EFB43821.1| two-component system, OmpR family, response regulator ResD [Staphylococcus aureus subsp. aureus C101] gi|282321478|gb|EFB51803.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp. aureus M899] gi|290920196|gb|EFD97262.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp. aureus M1015] gi|291095040|gb|EFE25305.1| two-component system, OmpR family, response regulator ResD [Staphylococcus aureus subsp. aureus 58-424] gi|291466753|gb|EFF09273.1| two-component system, OmpR family, response regulator ResD [Staphylococcus aureus subsp. aureus M809] Length = 247 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 34/232 (14%), Positives = 85/232 (36%), Gaps = 14/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ + + ++ + L ++ L + Sbjct: 11 ILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLML--PEMDGI 68 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112 ++ +R H Q P+I ++ ++ F+SG DD + KP RE + Sbjct: 69 QVATKLREHKQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQS 128 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + + + + + + +D + L +E +L YL K + Q Sbjct: 129 TTVEQSEPHARDVIKFKHLEIDNDAHRVLADNQEVNLTPKEYELLIYLAKTPNKVFDREQ 188 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKL--GFDPVDSKRFLGYSIDW 222 + ++ ++ + V++H+ +LR+KL + + +GY + Sbjct: 189 LLKEVW-HYEFYGDLRTVDTHVKRLREKLNRVSSEAAHMIQTVWGVGYKFEV 239 >gi|172040160|ref|YP_001799874.1| two-component system response regulator MtrA [Corynebacterium urealyticum DSM 7109] gi|171851464|emb|CAQ04440.1| two-component system response regulator MtrA [Corynebacterium urealyticum DSM 7109] Length = 226 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 44/222 (19%), Positives = 93/222 (41%), Gaps = 7/222 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + +G D+ ++ L G + Sbjct: 5 ILVVDDDPAISEMLTIVLQTEGFDTVVVGDGNDAVTAAQEHDPDLILLDVML--PGMSGI 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 ++ R +R S VP++ ++ + +SG DD + KP +E++ARV A RR Sbjct: 63 DVCRTVREFSTVPIVMLTARTDTVDVVLGLESGADDYITKPFKPKELIARVRARLRRSPE 122 Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + G + + + G + GEV L E +L L + G+ ++ ++ ++ Sbjct: 123 EADESTTIRVGEVEIDTAGHEVTRGGEVINLTPIEFDLLTTLASRPGQVFSREELLEKVW 182 Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219 G + ++ + +V H+ +LR K+ + V + R +GY Sbjct: 183 G-YRKSGDTRLVNVHVQRLRSKVERDPDDPQVVLTVRGIGYK 223 >gi|219667424|ref|YP_002457859.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219537684|gb|ACL19423.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 230 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 49/226 (21%), Positives = 91/226 (40%), Gaps = 9/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L+DD + + A +G + + L D+ ++ L G Sbjct: 3 ILLVDDEKNISNVLKAYLQQEGFHVTTAVNGLIALTLFKENSYDLVLLDLML--PGLSGE 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116 E+ R IR S P+I ++ L+ L + G DD + KP RE++AR Sbjct: 61 EICREIRKISATPVIMLTAKVELEDRLQGLNLGADDYIVKPFSPREVVARIKAVLRRTHI 120 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 ++++ + + + + Q E L E +IL L G+ ++ Q+ Sbjct: 121 ETALLADSITYDNGLTIDNARHEVRFQDEAILLTPTEFKILGALAKYPGRVYSRGQLVQI 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + G D +E V+++HI KLR+KL + + +GY + Sbjct: 181 VQG-HDFGGDERVIDAHIKKLRQKLEGVPGDPKIILTVYGVGYKFN 225 >gi|16803987|ref|NP_465472.1| hypothetical protein lmo1948 [Listeria monocytogenes EGD-e] gi|47097091|ref|ZP_00234661.1| DNA-binding response regulator ResD [Listeria monocytogenes str. 1/2a F6854] gi|217963900|ref|YP_002349578.1| ResD family transcriptional regulator [Listeria monocytogenes HCC23] gi|224498602|ref|ZP_03666951.1| transcriptional regulatory protein ResD [Listeria monocytogenes Finland 1988] gi|224501252|ref|ZP_03669559.1| transcriptional regulatory protein ResD [Listeria monocytogenes FSL R2-561] gi|254831451|ref|ZP_05236106.1| transcriptional regulatory protein ResD [Listeria monocytogenes 10403S] gi|254899355|ref|ZP_05259279.1| transcriptional regulatory protein ResD [Listeria monocytogenes J0161] gi|254912506|ref|ZP_05262518.1| resD [Listeria monocytogenes J2818] gi|254936833|ref|ZP_05268530.1| resD [Listeria monocytogenes F6900] gi|255026084|ref|ZP_05298070.1| transcriptional regulatory protein ResD [Listeria monocytogenes FSL J2-003] gi|284802393|ref|YP_003414258.1| hypothetical protein LM5578_2149 [Listeria monocytogenes 08-5578] gi|284995535|ref|YP_003417303.1| hypothetical protein LM5923_2100 [Listeria monocytogenes 08-5923] gi|290892108|ref|ZP_06555104.1| resD protein [Listeria monocytogenes FSL J2-071] gi|16411401|emb|CAD00026.1| resD [Listeria monocytogenes EGD-e] gi|47014536|gb|EAL05499.1| DNA-binding response regulator ResD [Listeria monocytogenes str. 1/2a F6854] gi|217333170|gb|ACK38964.1| transcriptional regulatory protein ResD [Listeria monocytogenes HCC23] gi|258609429|gb|EEW22037.1| resD [Listeria monocytogenes F6900] gi|284057955|gb|ADB68896.1| hypothetical protein LM5578_2149 [Listeria monocytogenes 08-5578] gi|284061002|gb|ADB71941.1| hypothetical protein LM5923_2100 [Listeria monocytogenes 08-5923] gi|290558231|gb|EFD91749.1| resD protein [Listeria monocytogenes FSL J2-071] gi|293590491|gb|EFF98825.1| resD [Listeria monocytogenes J2818] gi|307571530|emb|CAR84709.1| DNA-binding response regulator [Listeria monocytogenes L99] Length = 238 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 34/231 (14%), Positives = 89/231 (38%), Gaps = 14/231 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD ++ + +E + + + + +V ++ G+ +E Sbjct: 8 LVVDDEDRIRRLLKMYLERENYRIEEASDGDQALSMALNNNYEVILLDLM--MPGKDGIE 65 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARVA 113 + R +R P++ ++ + F+ G DD + KP RE A+ + Sbjct: 66 VCRELREFKSTPVVMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKAVLRRAKQS 125 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + +++ ++ V G+ L +E +L YL + K + + Sbjct: 126 SEESAGGTPGDIITFPHLKIDNEAHRVIVDGKEIGLTPKEYDLLYYLAKSPDKVFDRESL 185 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF--DPVDSKRFLGYSIDW 222 ++ ++ + +++H+ +LR+KL + + + LGY + Sbjct: 186 LKEVW-RYEFFGDLRTIDTHVKRLREKLHDVSEDAARMIVTVWGLGYKFEV 235 >gi|224283668|ref|ZP_03646990.1| Putative response regulator [Bifidobacterium bifidum NCIMB 41171] gi|313140824|ref|ZP_07803017.1| response regulator [Bifidobacterium bifidum NCIMB 41171] gi|313133334|gb|EFR50951.1| response regulator [Bifidobacterium bifidum NCIMB 41171] Length = 234 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 52/230 (22%), Positives = 94/230 (40%), Gaps = 13/230 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++ + +G + S E L + D+ ++ L G Sbjct: 4 ILIVEDEESYREPLVYQLTREGYDVSAAASGEEGLELFTKGGIDLVLLDLML--PGIDGT 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112 L R IR S+VP+I ++ + + + G DD V KP RE + Sbjct: 62 ALCRRIREQSRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVLRRNQG 121 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 A + + G I + V+GE P +E +LEYLM N+G+ + + Q Sbjct: 122 AVEASGVVDDDIPLVCGDISMQVGQHQVTVRGESVFFPLKEFELLEYLMQNKGRVMTRHQ 181 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221 + I+G D + ++ H+ ++R K+ + + R LGY ID Sbjct: 182 LIDRIWG-SDYVGDTKTLDVHVKRVRSKIEEDPAHPRYLTTVRGLGYKID 230 >gi|169344709|ref|ZP_02630248.2| DNA-binding response regulator [Clostridium perfringens C str. JGS1495] gi|169297144|gb|EDS79259.1| DNA-binding response regulator [Clostridium perfringens C str. JGS1495] Length = 231 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 49/227 (21%), Positives = 95/227 (41%), Gaps = 9/227 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD +++ +G E + + + D+ ++ L LE Sbjct: 7 LIVDDEEHIRELIKFNLKKEGYDTEVAVNGTEALKIIREIKFDLILLDLML--PEIDGLE 64 Query: 63 LPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYR 117 + + IR S +P++ I+ + + G DD + KP RE++ARV A Sbjct: 65 VCKEIRRNEETSDIPVMMITAKGEEFDKVLGLELGADDYITKPFSIRELMARVKALLRRS 124 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 +K N + G + V R+ + L +E +L+ L+ N+G + + + I Sbjct: 125 NVKKEENIIKFGDVVVNFKTREVTKGTQNVELTLKEFELLKLLIKNKGNILTRELLLDKI 184 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223 +G ++ E V+ HI LRKK+ + + + R +GY N Sbjct: 185 WG-YEYIGETRTVDVHIRHLRKKIESDDKNPQHIQTIRGVGYKFTSN 230 >gi|220927161|ref|YP_002502463.1| two component transcriptional regulator PhoB, winged helix family [Methylobacterium nodulans ORS 2060] gi|219951768|gb|ACL62160.1| two component transcriptional regulator PhoB, winged helix family [Methylobacterium nodulans ORS 2060] Length = 234 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 50/226 (22%), Positives = 94/226 (41%), Gaps = 8/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G ++ + + D+ ++ + G + Sbjct: 5 ILIVEDEEPLTLLLRYNLEAEGFEVDAVARGDEADIRLREQIPDLVLLDWMV--PGLSGI 62 Query: 62 ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IY 116 EL R IRA + P+I ++ + +G DD + KP E+LARV A Sbjct: 63 ELCRRIRARRETERLPIIMLTARGEEGDRVRGLATGADDYIVKPFSVPELLARVRALLRR 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + G I + +G L E ++LE+LM + G+ ++ Q+ Sbjct: 123 AKPAHVAHLLVAGDIELDRVSHRVRREGRELHLGPTEFKLLEFLMQSPGRVFSREQLLDG 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 ++G D ++E V+ HI +LRK + DP+ + R GYS D Sbjct: 183 VWG-HDVYIDERTVDVHIGRLRKAINRPRRPDPIRTVRGSGYSFDE 227 >gi|170727789|ref|YP_001761815.1| two component transcriptional regulator [Shewanella woodyi ATCC 51908] gi|169813136|gb|ACA87720.1| two component transcriptional regulator, winged helix family [Shewanella woodyi ATCC 51908] Length = 229 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 35/224 (15%), Positives = 84/224 (37%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D +++ + G + L + D+ ++ G + Sbjct: 5 ILIVEDELAIREMLTFVLEQHGFVTSAAEDFDSALDLLTEPYPDLVLLDWM--FPGGSGI 62 Query: 62 ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIY 116 +L + +R Q+P+I ++ + + + G DD + KP +E+ + Sbjct: 63 QLAKRMRQDEFTRQIPIIMLTARGEEEDKVRGLEVGADDYMTKPFSPKELVARIKAVIRR 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + + V +V + E R+L + M + + ++ Q+ Sbjct: 123 SSPTSLEEPIDVQGLMLDPISHRVTVGEQVLEMGPTEFRLLHFFMTHPERVYSREQLLDN 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + VE+ V+ HI +LRK + + + R GY Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKAIEPSNHDRLIQTVRGAGYRF 225 >gi|78780097|ref|YP_398209.1| two component transcriptional regulator [Prochlorococcus marinus str. MIT 9312] gi|78713596|gb|ABB50773.1| two component transcriptional regulator, winged helix family [Prochlorococcus marinus str. MIT 9312] Length = 248 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 53/231 (22%), Positives = 96/231 (41%), Gaps = 16/231 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V + G + + E D+ ++ L Sbjct: 6 ILVVDDEPAVLKVLVTRLQLAGYQVFSATNGEEAIESFHRDSPDLIVLDVML--PKMDGF 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R IRA S VP+I ++ ++ + D G DD ++KP +E+ AR+A I RR+ Sbjct: 64 AVCRRIRAESVVPIIFLTALEAISERVAGLDLGADDYLSKPFSPKELEARIATILRRMGP 123 Query: 122 S------------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 + + G + V ++ R GE L E +LE L GK V Sbjct: 124 TVSVAETKEVPSGKGVMKFGSLVVDTNRRQVSRAGERISLTYTEFSLLELLFDEPGKVVP 183 Query: 170 KTQIFSAIYG-LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218 + +I ++G A + VV+ ++++LR KL + + + + R +GY Sbjct: 184 RAEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 234 >gi|78484886|ref|YP_390811.1| two component transcriptional regulator [Thiomicrospira crunogena XCL-2] gi|78363172|gb|ABB41137.1| two component transcriptional regulator, winged helix family [Thiomicrospira crunogena XCL-2] Length = 230 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 48/223 (21%), Positives = 91/223 (40%), Gaps = 5/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++++D A ++D + + E L + D ++ L G G + Sbjct: 6 ILVVEDEAAIRDMLSFTLTAANYKVIEAPNAEQGWKLLLEHQPDCVLLDWMLPGVSGISL 65 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117 + R + P+I ++ + F+SG DD V KP R ++ARV Sbjct: 66 AQRIRQNDQTATTPIIMLTARGEENDQVQGFESGADDYVVKPFSPRALVARVKALLRRQS 125 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 K + + + GP+++ V E L E +++++ M + + + Q+ + Sbjct: 126 PEKSTLDLIKIGPLKLDLSSYRFTVNDEEVKLGPTEFKLMQFFMTHSNRVYTRVQLLDQV 185 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G + VEE V+ HI +LRK L D + + R GY Sbjct: 186 WGE-NVVVEERTVDVHIRRLRKLLDPVGAADYIQTVRGAGYRF 227 >gi|57234165|ref|YP_181773.1| DNA-binding response regulator [Dehalococcoides ethenogenes 195] gi|57224613|gb|AAW39670.1| DNA-binding response regulator [Dehalococcoides ethenogenes 195] Length = 227 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 47/223 (21%), Positives = 89/223 (39%), Gaps = 8/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD + + A +G + + + D+ ++ L Sbjct: 5 ILIADDENKIAEILKAYLEREGFKVSVTYNGKEALAKFREENPDLIILDLML--PEISGW 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R IR S+VP+I ++ L L + G DD + KP +E++AR RR + Sbjct: 63 DVCREIRKESRVPIIMLTARDELTDKLIGLEIGADDYMTKPFEAKELVARAKVQLRRSEH 122 Query: 122 SNNRAE---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + + ++ R ++ GE L E IL L A+ G+ ++ QI + Sbjct: 123 TPASEPVLVIDRLEIDTERRLVKMDGENIDLTATEFDILANLAASPGRVFSRMQILDKL- 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 E ++SHI LRKK+ + + +GY + Sbjct: 182 -GEAYEGYERTIDSHIKNLRKKIEPDPESPAYILTVHGVGYKM 223 >gi|302387594|ref|YP_003823416.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] gi|302198222|gb|ADL05793.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] Length = 233 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 53/228 (23%), Positives = 95/228 (41%), Gaps = 12/228 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD L+ G DG+ ++ E L DV ++ L E Sbjct: 5 LVVDDEKLIVKGMRFSLEQDGMEVDCAYDGEEAINLAKQKEYDVVLLDVML--PKYDGYE 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + IR S++P+I ++ + + + G DD + KP + E+ AR+ AI RR Sbjct: 63 VCQAIREFSEMPIIMLTAKGNDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRNSKK 122 Query: 123 NNRAETGPIRV--------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N R +V D R + + L +E +LE L N GK ++ Q+ Sbjct: 123 NKRDSQDDSQVVIAGDLKLDRDSRRVFIAEKEINLTAKEFDLLELLTCNPGKVYSREQLL 182 Query: 175 SAIYGLFDEA-VEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + ++G + V+ H+ +LR+K+ V +K +GY Sbjct: 183 TYVWGNKAMDTGDVRTVDVHVRRLREKIEPSPSDPKYVHTKWGVGYYF 230 >gi|260435319|ref|ZP_05789289.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Synechococcus sp. WH 8109] gi|260413193|gb|EEX06489.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Synechococcus sp. WH 8109] Length = 262 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 52/231 (22%), Positives = 96/231 (41%), Gaps = 16/231 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A V+ + G + E + + D+ ++ L Sbjct: 22 ILVVDDEAAVRRVLVMRLQLSGYRVICAEDGEQALEMFHNESPDLVVLDVML--PKLDGF 79 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R +RA S VP+I +S ++ + D G DD + KP +E+ AR+A I RR+ Sbjct: 80 AVCRRLRAESCVPIIFLSAVEAISERVAGLDLGADDYLPKPFSPKELEARIATILRRVGR 139 Query: 122 SNNRAETGPIRV------------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 N E+ + ++ R E L E +LE L + G V Sbjct: 140 GNAVVESRELPTGQGVLRLGDLVVDTNRRQVTRGSERINLTYTEFSLLELLFRDPGHVVP 199 Query: 170 KTQIFSAIYG-LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218 + +I ++G A + VV+ ++++LR KL + + + + R +GY Sbjct: 200 RAEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 250 >gi|258510063|ref|YP_003183497.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257476789|gb|ACV57108.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 224 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 50/223 (22%), Positives = 98/223 (43%), Gaps = 4/223 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD +++ + +G + + ++ I+ Sbjct: 4 ILVADDEPHIRELVRSTLEREGHRVVEAADGREAADAVAREPVQLAVIDVM--MPEVDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL R +R VP++ ++ + G DD + KP E++ARV A+ RR ++ Sbjct: 62 ELTRWLREERDVPILLLTALGETSHKVRGLRLGADDYLVKPFAPEELVARVEALLRRYRI 121 Query: 122 SNNRAETGPIRVF-SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + A + SD + E GE LP +E ++L L A+ G+ +++ ++ ++G Sbjct: 122 RADGALDLAVLRLLSDTYEVEANGERMALPPKEFQLLFTLAASAGRTLSRDKLIEEVWG- 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 +D A +E V+ HI +LR K + + + R LGY ++ N Sbjct: 181 YDYAGDERTVDVHIKRLRVKFPEDVYPFRIRTVRGLGYRLEVN 223 >gi|49476768|ref|YP_034607.1| DNA-binding response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|118476036|ref|YP_893187.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|196042337|ref|ZP_03109611.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|196047737|ref|ZP_03114937.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|225862323|ref|YP_002747701.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|228913014|ref|ZP_04076654.1| hypothetical protein bthur0012_2590 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229089401|ref|ZP_04220673.1| hypothetical protein bcere0021_2500 [Bacillus cereus Rock3-42] gi|229182669|ref|ZP_04309911.1| hypothetical protein bcere0004_2530 [Bacillus cereus BGSC 6E1] gi|49328324|gb|AAT58970.1| DNA-binding response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|118415261|gb|ABK83680.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|196021427|gb|EDX60134.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|196026831|gb|EDX65464.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|225789225|gb|ACO29442.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|228600809|gb|EEK58387.1| hypothetical protein bcere0004_2530 [Bacillus cereus BGSC 6E1] gi|228693935|gb|EEL47626.1| hypothetical protein bcere0021_2500 [Bacillus cereus Rock3-42] gi|228846634|gb|EEM91646.1| hypothetical protein bthur0012_2590 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 237 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 43/228 (18%), Positives = 88/228 (38%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD +++ + ++ E L + + ++ + Sbjct: 6 ILIADDDKEIRNLLKIYLERELYMVDTAIDGEVALQLFNQNNYSLVILDLM--MPKVDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R + VP++ ++ + G DD + KP E++ARV A+ RR V Sbjct: 64 EVCRKLRDKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKALIRRFLV 123 Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + + E L +E +L++ +N G+ KTQ+ Sbjct: 124 LGSNINVQEKTTLAFKGLTINLNTYTVHTNKEEISLTGKELELLKFFTSNPGQVFTKTQL 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 F ++ + ++N V HI KLRKK+ + + + +GY Sbjct: 184 FRNVWD-DNYIEDDNTVMVHIRKLRKKIETDPSNPKFIQTVWGIGYKF 230 >gi|42781109|ref|NP_978356.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|42737030|gb|AAS40964.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] Length = 225 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 36/222 (16%), Positives = 93/222 (41%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ +G + + D+ ++ Sbjct: 5 ILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINEVKVDMVILDIM--MPNMDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ +R + +P++ ++ + F G DD + KP E++ RV A+ +R ++ Sbjct: 63 DVCFELRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 122 Query: 122 SNNRAETGPIR-VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + +++ + + + LP +E +L L + G+ ++ Q+ ++G Sbjct: 123 TVSQSIQVGNVLLNRKTFEVITGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG- 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D E ++ HI++LR+K + + + + R LGY ++ Sbjct: 182 YDFEGNERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLEV 223 >gi|323485119|ref|ZP_08090471.1| hypothetical protein HMPREF9474_02222 [Clostridium symbiosum WAL-14163] gi|323694012|ref|ZP_08108196.1| two component transcriptional regulator [Clostridium symbiosum WAL-14673] gi|323401549|gb|EGA93895.1| hypothetical protein HMPREF9474_02222 [Clostridium symbiosum WAL-14163] gi|323501948|gb|EGB17826.1| two component transcriptional regulator [Clostridium symbiosum WAL-14673] Length = 237 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 41/233 (17%), Positives = 87/233 (37%), Gaps = 16/233 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + E L ++ ++ L G Sbjct: 7 ILIVDDDYNIAELISLYLTKECFETRIVGDGEEALKLFPVFEPNLVLLDLML--PGIDGY 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH------------HREIL 109 ++ R +RA SQVP+I +S + + + G DD + KP R Sbjct: 65 QVCRELRASSQVPIIMLSAKGEIFDKVLGLELGADDYMIKPFDSKELVARVKAVLRRYQA 124 Query: 110 ARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 A +A + + E + V G +P +E +L +L ++ + Sbjct: 125 APPSAAPKPTDQHGDFVEYPDLIVNLTNYSVIYNGHSIEMPPKELELLYFLASSPNQVFT 184 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + Q+ I+G ++ + V+ HI +LR+K+++ + + +GY + Sbjct: 185 REQLLDHIWG-YEYIGDTRTVDVHIKRLREKIKDH-DKWALTTVWGIGYKFEV 235 >gi|153854056|ref|ZP_01995389.1| hypothetical protein DORLON_01380 [Dorea longicatena DSM 13814] gi|149753438|gb|EDM63369.1| hypothetical protein DORLON_01380 [Dorea longicatena DSM 13814] Length = 233 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 37/231 (16%), Positives = 84/231 (36%), Gaps = 14/231 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + + E + + ++ ++ L G Sbjct: 6 ILIVDDDENIAELVSLYLTKECFDTMMVHDGERALVAFDTYKPNLILLDLML--PGIDGY 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILAR 111 ++ R IR S P+I +S + + + G DD + KP + Sbjct: 64 QVCREIRTRSNTPIIMLSAKGEVFDKVLGLELGADDYIMKPFDAKELVARVKAVLRRYQV 123 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + E I + V G +P +E +L +L ++ + + Sbjct: 124 GSKPETPQADKGKCVEYPGIEINLTNYSVIVDGHTVEMPPKELELLYFLASSPNQVFTRE 183 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 Q+ I+G ++ + V+ HI +LR+K+++ G+ + +GY + Sbjct: 184 QLLDQIWG-YEYIGDTRTVDVHIKRLREKIKDHNGWSL-STVWGIGYKFEV 232 >gi|299542039|ref|ZP_07052358.1| two-component response regulator; MrsR2 protein [Lysinibacillus fusiformis ZC1] gi|298725462|gb|EFI66107.1| two-component response regulator; MrsR2 protein [Lysinibacillus fusiformis ZC1] Length = 240 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 47/230 (20%), Positives = 91/230 (39%), Gaps = 14/230 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +++DD A + + +G + +++ D+ ++ L + Sbjct: 6 ILVVDDEADLANLLKVSLQKEGYKQIYTASTIRDAWTSFQQTTPDIILLDVML--PDGEG 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +L R IR S VP++ +S + G DD + KP +E+ RV A RR Sbjct: 64 YDLCRRIREVSHVPVLFMSAKNEEIDKILGLAIGGDDYITKPFSPKEVAYRVKAQLRRAG 123 Query: 121 VSNNRAETG---------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 T P ++ +D + G + L +E ++ M N + ++K Sbjct: 124 YQTQDTITNIVEKTLQIGPFQLNADETEVHKNGVLLELTAKEIGLMACFMNNPNRILSKE 183 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220 +F ++G D +N V HI +LR+K+ + + + + LGY Sbjct: 184 TLFERVWGE-DFFGSDNTVMVHIRRLREKIEEDASNPLYITTVKGLGYKF 232 >gi|257054346|ref|YP_003132178.1| response regulator with CheY-like receiver domain-containing protein and winged-helix DNA-binding domain-containing protein [Saccharomonospora viridis DSM 43017] gi|256584218|gb|ACU95351.1| response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein [Saccharomonospora viridis DSM 43017] Length = 229 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 53/227 (23%), Positives = 97/227 (42%), Gaps = 11/227 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D D L +G + + D+ ++ L G + Sbjct: 5 LIVEDEESFADPLAFLLRKEGFTAAIATDGQQALEEFDRNGADIVLLDLML--PGMSGTD 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +R S VP+I ++ S + + G DD V KP RE++ARV A+ RR S Sbjct: 63 VCRELRQRSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARVRAVLRRGGDS 122 Query: 123 NNRAETGPI-------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + ++ R+ + V G PLP +E +LEYL+ N G+ + + Q+ Sbjct: 123 SGDSQQEQTVLIGGPVRMDVERHVVTVNGTEVPLPLKEFDLLEYLLRNVGRVLTRNQLID 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 ++G D + ++ H+ +LR K+ + + R LGY + Sbjct: 183 RVWGA-DYVGDTKTLDVHVKRLRSKIEPEPGSPRYLVTVRGLGYKFE 228 >gi|163731855|ref|ZP_02139302.1| phosphate regulon transcriptional regulatory protein PhoB [Roseobacter litoralis Och 149] gi|161395309|gb|EDQ19631.1| phosphate regulon transcriptional regulatory protein PhoB [Roseobacter litoralis Och 149] Length = 230 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 46/221 (20%), Positives = 91/221 (41%), Gaps = 4/221 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61 ++++D + ++ +G ++ + E L D+ ++ + G +V Sbjct: 10 LVVEDESAQREVLTYNLEAEGFAVSRAENGEEAMMLVDETAPDLIVLDWMMPNLSGIEVC 69 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + +P+I +S + ++G DD V KP E++ARV + RR++ Sbjct: 70 RRLKSKPETRAIPIIMLSARSEEVDRVRGLETGADDYVIKPYSVVELMARVRSQLRRVRP 129 Query: 122 SNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + I + + L E R+L M G+ ++ Q+ ++G Sbjct: 130 AATGERLEFEDIVLDASSHRVSRGKSELKLGPTEFRLLSTFMEKPGRVFSREQLLDRVWG 189 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D V+ V+ HI +LRK L G DP+ + R GY++ Sbjct: 190 R-DIYVDTRTVDVHIGRLRKALTQFGGSDPLRTVRGAGYAL 229 >gi|307266330|ref|ZP_07547869.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter wiegelii Rt8.B1] gi|326391193|ref|ZP_08212737.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus JW 200] gi|306918637|gb|EFN48872.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter wiegelii Rt8.B1] gi|325992762|gb|EGD51210.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus JW 200] Length = 231 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 42/224 (18%), Positives = 89/224 (39%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + +G E + D+ ++ L Sbjct: 5 ILIVDDEKPIVEIIKYNLEKEGYITYEAYDGEEALKIAKEQNPDLIILDVML--PKLDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 + R +R +P++ ++ + + G DD + KP RE++ARV A RR+ Sbjct: 63 SVLRTLRQSMTIPILMLTAKEEEVDKVLGLELGADDYITKPFSIRELIARVKANLRRISL 122 Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 S N +++ E + L RE +L +L+ N+G ++ + + Sbjct: 123 NGNESGNIIYVKNLKIDMSKYKVEKNNKEIELTSREFELLRFLILNKGLIFSREMLLEKV 182 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 +G ++ + V+ I +LR+K+ + + +KR +GY Sbjct: 183 WG-YEYLGDIRTVDVTIRRLREKIEDDPSNPKLIHTKRGVGYYF 225 >gi|290959362|ref|YP_003490544.1| two-component systen response regulator [Streptomyces scabiei 87.22] gi|260648888|emb|CBG72002.1| putative two-component systen response regulator [Streptomyces scabiei 87.22] Length = 244 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 50/229 (21%), Positives = 91/229 (39%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V+D +G E ++ R D+ ++ L Sbjct: 13 ILIVDDEPAVRDALRRSLAFEGYGTEVAVDGADALEKATAYRPDLVILDV--QMPRMDGL 70 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 R IR A P++ ++ ++ + D+G DD + KP E+ ARV A+ RR Sbjct: 71 TAARRIRGAGDTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARVRALLRRST 130 Query: 121 V---------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 ++ +R+ R+ L R E +LE MA+ + + + Sbjct: 131 YATALADTAEADEALSFADLRMDLATREVTRGTRPVELTRTEFTLLEMFMAHPRQVLTRE 190 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 QI A++G FD N ++ ++ LR+K V + R +GY + Sbjct: 191 QILKAVWG-FDFEPSSNSLDVYVMYLRRKTEAGGEPRLVHTVRGVGYVL 238 >gi|228914576|ref|ZP_04078185.1| DNA-binding response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228844895|gb|EEM89937.1| DNA-binding response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 228 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 36/222 (16%), Positives = 94/222 (42%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ +G + + D+ ++ Sbjct: 8 ILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINQVKVDMVILDIM--MPNMDGF 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ +R + +P++ ++ + F G DD + KP E++ RV A+ +R ++ Sbjct: 66 DVCFELRKYYDIPILILTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 125 Query: 122 SNNRAETGPIR-VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + +++ + + + + LP +E +L L + G+ ++ Q+ ++G Sbjct: 126 TVSQSIQVGTVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG- 184 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D E ++ HI++LR+K + + + + R LGY ++ Sbjct: 185 YDFEGNERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLEV 226 >gi|332974891|gb|EGK11804.1| DNA-binding response regulator [Desmospora sp. 8437] Length = 233 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 42/221 (19%), Positives = 93/221 (42%), Gaps = 4/221 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++ DD A ++ +G + +++ ++ + + Sbjct: 13 LVADDDAHIRKLLRHHLQREGYRVLEAADGLEAAEWLEKEPIELAVVDIM--MPNKDGYQ 70 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLKV 121 L R IR +P+I ++ LQ + +G DD + KP +E+L R+ A+ R +V Sbjct: 71 LCREIREDYDLPVILLTAKDQLQDKEAGYRAGTDDYLTKPFEPKELLFRIKALLRRYQRV 130 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 S + + + G+ LP +E +L L + G+ + ++ ++G Sbjct: 131 SADIIVLNGTAIDRKSYEVRSDGQTLLLPLKEFELLSQLGSYPGRVFTREELIRLVWG-P 189 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 D A ++ V+ HI +LR++ ++ + + R +GY ++ Sbjct: 190 DFAGDDRTVDVHIKRLRRRFADRAEDFVIQTVRGVGYKLEV 230 >gi|229184192|ref|ZP_04311401.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1] gi|228599307|gb|EEK56918.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1] Length = 228 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 36/222 (16%), Positives = 94/222 (42%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ +G + + D+ ++ Sbjct: 8 ILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINEVKVDMVILDIM--MPNMDGF 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ +R + +P++ ++ + F G DD + KP E++ RV A+ +R ++ Sbjct: 66 DVCFELRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 125 Query: 122 SNNRAETGPIR-VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + +++ + + + + LP +E +L L + G+ ++ Q+ ++G Sbjct: 126 TVSQSIQVGTVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG- 184 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D E ++ HI++LR+K + + + + R LGY ++ Sbjct: 185 YDFEGNERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLEV 226 >gi|256390005|ref|YP_003111569.1| two component transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256356231|gb|ACU69728.1| two component transcriptional regulator, winged helix family [Catenulispora acidiphila DSM 44928] Length = 225 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 47/222 (21%), Positives = 93/222 (41%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D A ++ G + S E + R D+ ++ L G Sbjct: 4 LLLVEDDAAIRTALQLALTRQGHQVAVAASGEEALATYKTVRPDLIVLDVML--PGVDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR Q+P+I ++ + +SG DD V KP+ R + AR+ A+ RR + Sbjct: 62 EVCRQIRRTEQLPIILLTARSDDIDVVVGLESGADDYVVKPVQPRVLDARIRAVLRRGER 121 Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + V G PL E +++ L + G+ +++ Q+ ++ Sbjct: 122 ETSDVAVYGDLTVDRSAMTVSKHGTAIPLTPTELKLVMELSRHAGQALSRQQLLRLVW-E 180 Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 D + +V++ + +LR K+ + + + R +GY +D Sbjct: 181 HDYLGDSRLVDACVQRLRAKVEDVPAEPTLIKTVRGVGYRLD 222 >gi|228961124|ref|ZP_04122750.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar pakistani str. T13001] gi|228798567|gb|EEM45554.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar pakistani str. T13001] Length = 232 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 53/229 (23%), Positives = 86/229 (37%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A + D +G + E + + R D+ ++ Sbjct: 6 ILIVDDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIETQRIDLVVLDIM--MPKMDGY 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +RA +P+I +S S + G DD + KP E++ARV A RR Sbjct: 64 EVTRQVRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 123 Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 N + + R V GE L +E IL L ++ K I Sbjct: 124 LNQPKVAENKSALEVGGVVIDPERRTVNVYGEQVELTPKEFDILYLLASHPKKVYNVENI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221 F ++ N V HI LRKKL +K + + +GY+ + Sbjct: 184 FQQVWADDYYEGG-NTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTFN 231 >gi|196041892|ref|ZP_03109180.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|196027264|gb|EDX65883.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] Length = 225 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 36/222 (16%), Positives = 95/222 (42%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ +G + + D+ ++ Sbjct: 5 ILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINEVKVDMVILDIM--MPNMDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ +R + ++P++ ++ + F G DD + KP E++ RV A+ +R ++ Sbjct: 63 DVCFELRKYYEIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 122 Query: 122 SNNRAETGPIR-VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + +++ + + + + LP +E +L L + G+ ++ Q+ ++G Sbjct: 123 TVSQSIQVGTVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG- 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D E ++ HI++LR+K + + + + R LGY ++ Sbjct: 182 YDFEGNERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLEV 223 >gi|332286633|ref|YP_004418544.1| phosphate regulon two-component response regulator [Pusillimonas sp. T7-7] gi|330430586|gb|AEC21920.1| phosphate regulon two-component response regulator [Pusillimonas sp. T7-7] Length = 233 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 43/222 (19%), Positives = 90/222 (40%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++++D +++ G + E + L + D+ ++ L G G + Sbjct: 5 ILVVEDEPAIQELISVNLSFAGHKVLRAFDAEQAQTLIRAELPDLILLDWMLPGASGITL 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 R VP+I ++ + ++ ++G DD + KP +E++AR+ A+ RR Sbjct: 65 ARTLRSDERTRHVPVIMLTAKGAEHDKVEGLEAGADDYITKPFSPKELIARIKAVLRRRA 124 Query: 121 VSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++ G+ + E R+L + M + + ++ Q+ ++ Sbjct: 125 PQLTDDIIQIGGLKLDPATHRVTGGGQTLTVGPTEFRLLHFFMTHTERVFSRAQLLDQVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G VEE V+ HI +LRK L + +++ R GY Sbjct: 185 GDH-VFVEERTVDVHIRRLRKALEPGKLENHIETVRGAGYRF 225 >gi|313901469|ref|ZP_07834924.1| two component transcriptional regulator, winged helix family [Thermaerobacter subterraneus DSM 13965] gi|313468263|gb|EFR63722.1| two component transcriptional regulator, winged helix family [Thermaerobacter subterraneus DSM 13965] Length = 256 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 42/221 (19%), Positives = 83/221 (37%), Gaps = 7/221 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + +G++ R V ++ L Sbjct: 35 LVVDDEESLLELVAYNLQRNGMAPVLARDGAEALRRLEERRPQVIILDVML--PDTDGFT 92 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R +R P++ ++ S + + G DD V KP RE+ + Sbjct: 93 LCRHLRERGIQTPILMLTARDSEIDKVLGLELGADDYVTKPFSPREL--VARIKALLRRT 150 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 R + GPI + G + G+ L E ++L L A G+ + ++ ++G Sbjct: 151 EGRRQQIGPIVIDYAGHEVYRDGQRVALTPTEFKLLATLAAEPGRAFTRQELLDRVWGE- 209 Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 + + V+ H+ LR+KL N + + + R GY ++ Sbjct: 210 EAFGDPRTVDVHVRHLREKLERNPSQPEWILTVRGHGYKLN 250 >gi|163939206|ref|YP_001644090.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163861403|gb|ABY42462.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] Length = 223 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 41/222 (18%), Positives = 84/222 (37%), Gaps = 7/222 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + ++ + G + + + D ++ L Sbjct: 7 LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALRKLETDHYDFVVLDIM--MPEMDGLS 64 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRLK 120 + + IR S VP+I ++ ++ G DD + KP E+ + Sbjct: 65 VCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTKQ 124 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + GPI + R E GE PL +E +L +L + G+ ++ Q+ ++G Sbjct: 125 EQQEEIQFGPILINEKSRRVETNGETIPLTVKEFDLLYFLCQHNGQVFSREQLLEKVWG- 183 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D A V++H+ +R KL + + +GY + Sbjct: 184 YDYAGSTRTVDTHVKTMRLKLGESGN--YIQTVWGVGYKFEV 223 >gi|324326021|gb|ADY21281.1| response regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 225 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 36/222 (16%), Positives = 92/222 (41%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ +G + D+ ++ Sbjct: 5 ILIVDDDPHIRELVSIFLEREGFQTYEAIDGLDALQKIDEVKVDMVILDIM--MPNMDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ +R + +P++ ++ + F G DD + KP E++ RV A+ +R ++ Sbjct: 63 DVCFELRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 122 Query: 122 SNNRAETGPIR-VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + +++ + + + LP +E +L L + G+ ++ Q+ ++G Sbjct: 123 TVSQSIQVGNVLLNRKTFEVTTGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG- 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D E ++ HI++LR+K + + + + R LGY ++ Sbjct: 182 YDFEGNERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLEV 223 >gi|78213143|ref|YP_381922.1| two component transcriptional regulator [Synechococcus sp. CC9605] gi|78197602|gb|ABB35367.1| two component transcriptional regulator, winged helix family [Synechococcus sp. CC9605] Length = 254 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 44/228 (19%), Positives = 85/228 (37%), Gaps = 10/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARED-VSAIEAFLIGKGEKV 60 ++++D +++ +G + L ++ D V I L+ G Sbjct: 27 LLVVEDDDSIRETVGEALRAEGFEVHTCADGASALTLITAGSSDPVDLIVLDLMLPGLGG 86 Query: 61 LELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI------HHREILARVA 113 L+L R +R ++ P++ IS S + + G DD + KP L R + Sbjct: 87 LDLCRELRRLNNTTPILVISARDSETDRVLGLEVGADDYLVKPFGLRELVARCRALLRRS 146 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + + +F G L +E +ILE + N + ++ Q+ Sbjct: 147 SQSETSPSQPHSFTHANLCLFPSECRVTRDGTDLTLSPKEYKILELFIQNPKRVWSRDQL 206 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 I+G+ D + V+ HI LR+K+ + + R GY Sbjct: 207 LEKIWGV-DFIGDTKTVDVHIRWLREKVEQEPSSPQLIRTVRGFGYRF 253 >gi|312200116|ref|YP_004020177.1| transcriptional regulator [Frankia sp. EuI1c] gi|311231452|gb|ADP84307.1| two component transcriptional regulator, winged helix family [Frankia sp. EuI1c] Length = 227 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 48/226 (21%), Positives = 92/226 (40%), Gaps = 9/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + +G + D+ ++ L G Sbjct: 4 LLVVEDEESFSEALSFMLEREGFDVAVAADGHAALSDFERHGADLVLLDVML--PGLSGT 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R S VP+I ++ S + + G DD V KP RE++AR+ A+ RR Sbjct: 62 EVCRALRQKSSVPVIMLTARDSEIDKVLGLELGADDYVTKPFSARELVARIRAVLRRRGS 121 Query: 122 SNNRAETGP-----IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + A +R+ + V G LP +E +LE + N G+ + + Q+ Sbjct: 122 EPDEAAPVTLEAGGVRMDVERHVVTVHGAAVALPLKEFELLEMFLRNTGRVLTRGQLIDR 181 Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 ++G D + ++ H+ +LR K+ + + R LGY + Sbjct: 182 VWG-SDYVGDTKTLDVHVKRLRAKIESEPGNPRHLVTVRGLGYKFE 226 >gi|323487492|ref|ZP_08092786.1| hypothetical protein HMPREF9474_04537 [Clostridium symbiosum WAL-14163] gi|323694424|ref|ZP_08108595.1| two component transcriptional regulator [Clostridium symbiosum WAL-14673] gi|323399174|gb|EGA91578.1| hypothetical protein HMPREF9474_04537 [Clostridium symbiosum WAL-14163] gi|323501505|gb|EGB17396.1| two component transcriptional regulator [Clostridium symbiosum WAL-14673] Length = 232 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 48/228 (21%), Positives = 95/228 (41%), Gaps = 12/228 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD L+ G DG+ ++ E + D+ ++ L E Sbjct: 5 LVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEAIRMAKETEYDIVLLDVML--PKFDGFE 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + IR S++P+I ++ + + G DD + KP + E+ AR+ AI RR Sbjct: 63 VCQAIREFSEMPIIMVTAKGGDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRNAKK 122 Query: 123 NNRAETGPIRV--------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + +V +D R + + L +E +LE L+ N K ++ ++ Sbjct: 123 SKKESQSSGKVVQAGDLKLDTDSRRVFIAEKEINLTAKEFDLLELLVCNPNKVYSREELL 182 Query: 175 SAIYGLFDEAVEE-NVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++G A + V+ H+ +LR+K+ V +K +GY Sbjct: 183 RFVWGNKAAAGGDVRTVDVHVRRLREKIEPSPSEPKYVHTKWGVGYYF 230 >gi|302530364|ref|ZP_07282706.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. AA4] gi|302439259|gb|EFL11075.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. AA4] Length = 233 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 46/225 (20%), Positives = 93/225 (41%), Gaps = 10/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD V+D G +++ + D+ ++ G LE Sbjct: 9 LVVDDDETVRDVVRRYLETAGFTVDLAGDGTAALAQFAERVPDLVVLDVM--MPGLNGLE 66 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +R SQVP++ ++ + + G DD V KP +E+ RVA++ RR ++ Sbjct: 67 VCRRLRQTSQVPIVMLTALGEEENRIAGLQLGADDYVTKPFSPKELTLRVASVLRRARMP 126 Query: 123 NNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 T + R + G PL RE +L + +++ G ++ + + Sbjct: 127 RPEPPTAELVDGNLRLQMTARQATLDGAALPLTTREFDLLAFFLSHPGVAFSRADLLEKV 186 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 +G +++ V H+ +LR+K+ + V + +GY D Sbjct: 187 WGWD--FGDQSTVTVHVRRLREKIERDPAKPVRVATVWGVGYRYD 229 >gi|255659043|ref|ZP_05404452.1| DNA-binding response regulator VicR [Mitsuokella multacida DSM 20544] gi|260848481|gb|EEX68488.1| DNA-binding response regulator VicR [Mitsuokella multacida DSM 20544] Length = 233 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 38/227 (16%), Positives = 87/227 (38%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + +G +E + + D+ ++ L G Sbjct: 4 ILIVEDDDKIAEIEQDYLLANGFEVERAADGRSGLAMARQDQYDLILLDIML--PGLDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R +R + +VP++ ++ L G DD + KP + E++ARV + R + Sbjct: 62 AVCRELRRYKEVPVLMVTARQEEVDVLRGLGVGADDYIMKPFNPNELVARVRSHIARYER 121 Query: 122 SNNRAETGPI-------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + D + + P RRE +L +L + ++ +F Sbjct: 122 ILASVKPEQHVVKSGALEIQLDAYRVFLDKKEVPFTRREFELLAFLAEHPNIVFSREALF 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 ++G + + V HI+++R+K+ +++ R GY Sbjct: 182 ERVWGA-EALGDSATVMVHINRIREKIEEDPAHPRYLETIRGAGYRF 227 >gi|228920689|ref|ZP_04084032.1| DNA-binding response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228838990|gb|EEM84288.1| DNA-binding response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 234 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 37/222 (16%), Positives = 92/222 (41%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ +G + D+ ++ Sbjct: 14 ILIVDDDPHIRELVSVFLEREGFQTYEAIDGVDALQKMDDVKVDMVILDIM--MPNMDGF 71 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ +R + +P++ ++ + F G DD + KP E++ RV A+ +R ++ Sbjct: 72 DVCFELRKYYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVMRVKALLKRYQI 131 Query: 122 SNNRAETGPIR-VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + +++ + + + LP +E +L L + G+ ++ Q+ I+G Sbjct: 132 TVSQSIQVGNVLLNRKTFEVTSGEQTVTLPLKEFELLFTLGSKSGRTCSREQLIEEIWG- 190 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D E ++ HI++LR+K + + + + R LGY ++ Sbjct: 191 YDFEGNERTLDVHINRLREKFQEEQSKFSIKTIRGLGYRLEV 232 >gi|315303906|ref|ZP_07874373.1| transcriptional regulatory protein ResD [Listeria ivanovii FSL F6-596] gi|313627723|gb|EFR96389.1| transcriptional regulatory protein ResD [Listeria ivanovii FSL F6-596] Length = 238 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 34/231 (14%), Positives = 88/231 (38%), Gaps = 14/231 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD ++ + +E + + + + +V ++ G+ +E Sbjct: 8 LVVDDEDRIRRLLKMYLERENYRIEEASDGDQALDMALNNNYEVILLDLM--MPGKDGIE 65 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARVA 113 + R +R P++ ++ + F+ G DD + KP RE A+ Sbjct: 66 VCRELREFKATPVVMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKAVLRRAKQN 125 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + +++ ++ V G+ L +E +L YL + K + + Sbjct: 126 SEEGMNGTPGDIITFPHLKIDNEAHRVIVDGKEIGLTPKEYDLLYYLAKSPDKVFDRESL 185 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLG--FDPVDSKRFLGYSIDW 222 ++ ++ + +++H+ +LR+KL + + + LGY + Sbjct: 186 LKEVW-RYEFFGDLRTIDTHVKRLREKLHDVSEDAARMIVTVWGLGYKFEV 235 >gi|303241663|ref|ZP_07328161.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] gi|302590778|gb|EFL60528.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] Length = 231 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 42/227 (18%), Positives = 91/227 (40%), Gaps = 10/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G N E + D+ ++ L Sbjct: 5 ILIVDDEKNIVDILKFNLVKEGFQTIEANDGEQAIECALKEKPDLILLDIML--PKVDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI------ 115 + R +R P+I I+ + + G DD + KP RE++ARV A Sbjct: 63 TVCRKLRQTISTPIIMITAKEEEVDKVLGLELGADDYITKPFSTRELMARVKANLRRVSS 122 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + N + G + + D + + +V L RE ++++L +G+ ++ + Sbjct: 123 ENTVSKECNAIKCGDLEIDIDRYEVKRDNKVLELTLREFELVKFLALQQGQIFSRESLLE 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 ++G ++ + V+ + +LR+K+ + + +KR +GY + Sbjct: 183 KVWG-YEYYGDVRTVDVTVRRLREKVENDPSNPSYIMTKRGVGYYFN 228 >gi|304311894|ref|YP_003811492.1| Phosphatase regulon transcriptional regulatory protein [gamma proteobacterium HdN1] gi|301797627|emb|CBL45848.1| Phosphatase regulon transcriptional regulatory protein [gamma proteobacterium HdN1] Length = 228 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 43/224 (19%), Positives = 91/224 (40%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + G +++ + + D+ ++ L G + Sbjct: 5 ILIVDDEIAICELLTLALEQAGFTVQAAYDGKEAWIKLAEQAPDLLLLDWML--PGTSGI 62 Query: 62 ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IY 116 EL R IR +P+I +S + + G DD + KP RE+++R+ A Sbjct: 63 ELARRIRQTDNLRTLPIIMLSAKSEEDNKITGLEIGADDYITKPFSTRELISRIKALLRR 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 R + G + + + + L E ++LE+ + N + ++ Q+ + Sbjct: 123 RAPDRLEQQLVHGELTLDVISQRVHTKSGEISLGPIEFKLLEFFLRNPNRVFSREQLLNR 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G +E+ V+ HI +LRK L +++ R GY + Sbjct: 183 VWGSTVY-IEDRTVDVHILRLRKSLNKAELPPMIETVRGSGYRL 225 >gi|83591942|ref|YP_425694.1| two component transcriptional regulator [Rhodospirillum rubrum ATCC 11170] gi|83574856|gb|ABC21407.1| two component transcriptional regulator, winged helix family [Rhodospirillum rubrum ATCC 11170] Length = 233 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 49/224 (21%), Positives = 93/224 (41%), Gaps = 4/224 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61 ++++D + +G + E L + + DV ++ L G +V Sbjct: 6 LIVEDEVSLVTLLRYNLEKEGYRVSEAMDGEEAMTLVAEDQPDVVILDWMLPSLSGIEVC 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119 R +P++ ++ + ++G DD ++KP E+LARV A + Sbjct: 66 RQLRRKPRTRDLPILMLTARGEESDRIRGLNTGADDYMSKPFSMPELLARVKALLRRAQP 125 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + + G L E R+L++LM N G ++ ++ +A++G Sbjct: 126 TSAKGTLSYSDVVMDLGAHRVTRGGRYIHLGPTEFRLLQFLMQNPGAVFSREELLNAVWG 185 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 D VE V+ HI +LRK L + D + + R GY++D N Sbjct: 186 -PDIYVEPRTVDVHIRRLRKALNGEASTDLIRTVRAAGYALDTN 228 >gi|289642155|ref|ZP_06474306.1| two component transcriptional regulator, winged helix family [Frankia symbiont of Datisca glomerata] gi|289508001|gb|EFD28949.1| two component transcriptional regulator, winged helix family [Frankia symbiont of Datisca glomerata] Length = 226 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 51/225 (22%), Positives = 94/225 (41%), Gaps = 8/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D D + +G + D+ ++ L G Sbjct: 4 LLVVEDEESFSDALSFMLEREGFDVAVAADGLAALTEFERHGADLVLLDLML--PGLSGT 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R S VP+I ++ S + + G DD V KP RE++AR+ A+ RR Sbjct: 62 EVCRALRQRSTVPVIMLTARDSEIDKVVGLELGADDYVTKPFSARELVARIRAVLRRRGE 121 Query: 122 SNNRAETG----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + R P+R+ + V G PLP +E +LE + N G+ + + Q+ + Sbjct: 122 IDERVTATLEAGPVRMDVERHVVTVAGASVPLPLKEFELLEMFLRNAGRVLTRGQLIDRV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 +G D + ++ H+ +LR K+ + + R LGY + Sbjct: 182 WG-SDYVGDTKTLDVHVKRLRTKIEGEPGNPRHLVTVRGLGYKFE 225 >gi|297545597|ref|YP_003677899.1| winged helix family two component transcriptional regulator [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296843372|gb|ADH61888.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 231 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 41/224 (18%), Positives = 92/224 (41%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + +G E + D+ ++ L Sbjct: 5 ILIVDDEKPIVEIIKYNLEKEGYITYEAYDGEEALKIAKEQNPDLIILDVML--PKLDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R +R +P++ ++ + + G DD + KP RE++ARV A RR+ + Sbjct: 63 SVLRTLRQSMTIPILMLTAKEEEVDKVLGLELGADDYITKPFSIRELIARVKANLRRISL 122 Query: 122 SNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + N + +++ E + L RE +L++L+ N+G ++ + + Sbjct: 123 NGNESGNVLCVKNLKIDMSKYKVEKDNKEVELTSREFELLKFLVLNKGLIFSREMLLEKV 182 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 +G ++ + V+ I +LR+K+ + + +KR +GY Sbjct: 183 WG-YEYLGDIRTVDVTIRRLREKIEDDPSNPKLIHTKRGVGYYF 225 >gi|228927049|ref|ZP_04090115.1| DNA-binding response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229121535|ref|ZP_04250762.1| DNA-binding response regulator [Bacillus cereus 95/8201] gi|228661999|gb|EEL17612.1| DNA-binding response regulator [Bacillus cereus 95/8201] gi|228832784|gb|EEM78355.1| DNA-binding response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 228 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 36/222 (16%), Positives = 94/222 (42%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ +G + + D+ ++ Sbjct: 8 ILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINEVKVDMVILDIM--MPNMDGF 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ +R + +P++ ++ + F G DD + KP E++ RV A+ +R ++ Sbjct: 66 DVCFELRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 125 Query: 122 SNNRAETGPIR-VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + +++ + + + + LP +E +L L + G+ ++ Q+ ++G Sbjct: 126 TVSQSIQVGTVLLNRKTFEVAIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG- 184 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D E ++ HI++LR+K + + + + R LGY ++ Sbjct: 185 YDFEGNERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLEV 226 >gi|225868178|ref|YP_002744126.1| response regulator protein [Streptococcus equi subsp. zooepidemicus] gi|225701454|emb|CAW98586.1| response regulator protein [Streptococcus equi subsp. zooepidemicus] Length = 236 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 48/232 (20%), Positives = 97/232 (41%), Gaps = 16/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + + + D+ ++ L L Sbjct: 4 ILIVDDEKPISDIIKFNLTKEGYDTVTAFDGKEAVAVFEEEKPDLIILDLML--PELDGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IR S +P+I +S S + + G DD V KP +RE+LARV A RR + Sbjct: 62 EVAKEIRKTSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTET 121 Query: 122 SN------------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 G +++ D + G+ L RE +L +L + G+ + Sbjct: 122 IETAVAEENASSGSQELTIGNLQILPDAFIAKKHGQEVELTHREFELLHHLANHIGQVMT 181 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + + ++G +D + V+ + +LR+K+ + + + ++R +GY + Sbjct: 182 REHLLETVWG-YDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYM 232 >gi|255524035|ref|ZP_05390997.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296186892|ref|ZP_06855293.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] gi|255512322|gb|EET88600.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296048606|gb|EFG88039.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] Length = 228 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 34/224 (15%), Positives = 91/224 (40%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + G + + + + + + D+ ++ L + Sbjct: 8 ILIVDDDENICEVIKMYVENSGYNTQVCHDGREAQEVFLEYKPDLVLLDIML--PHVDGI 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118 ++ + IR + P+I ++ + + G DD + KP +E + V Y Sbjct: 66 DVLKWIRKEYETPVIMLTAKGETFDKVLGLELGADDYIVKPFEPKELLARVKAVLRRYNV 125 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + + + +G+ +P +E ++ YL N+ + + Q+ ++ Sbjct: 126 DNENKEVLSFEDLAIDINSYTVVYKGQEIKMPPKEFELVYYLANNKNRVFTREQLLCEVW 185 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 G +D + V+ H+ +LR+KL+ + +++ +GY + Sbjct: 186 G-YDYPGDSRTVDVHVKRLREKLQGGPNWQ-IETVWGVGYKFEV 227 >gi|229160972|ref|ZP_04288961.1| DNA-binding response regulator [Bacillus cereus R309803] gi|228622540|gb|EEK79377.1| DNA-binding response regulator [Bacillus cereus R309803] Length = 228 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 36/222 (16%), Positives = 92/222 (41%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ +G + D+ ++ Sbjct: 8 ILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALRKIDEVKVDMVILDIM--MPNMDGF 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ +R + +P++ ++ + F G DD + KP E++ RV A+ +R ++ Sbjct: 66 DVCFELRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 125 Query: 122 SNNRAETGPIR-VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + +++ + + + LP +E +L L + G+ ++ Q+ ++G Sbjct: 126 TVSQSIQVGNVLLNRKTFEVTTGEQAVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG- 184 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D E ++ HI++LR+K + + + + R LGY ++ Sbjct: 185 YDFEGNERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLEV 226 >gi|15640738|ref|NP_230368.1| DNA-binding response regulator PhoB [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121590901|ref|ZP_01678224.1| DNA-binding response regulator PhoB [Vibrio cholerae 2740-80] gi|121728615|ref|ZP_01681635.1| DNA-binding response regulator PhoB [Vibrio cholerae V52] gi|147674650|ref|YP_001216209.1| DNA-binding response regulator PhoB [Vibrio cholerae O395] gi|153216130|ref|ZP_01950285.1| DNA-binding response regulator PhoB [Vibrio cholerae 1587] gi|153803530|ref|ZP_01958116.1| DNA-binding response regulator PhoB [Vibrio cholerae MZO-3] gi|153818850|ref|ZP_01971517.1| DNA-binding response regulator PhoB [Vibrio cholerae NCTC 8457] gi|153823136|ref|ZP_01975803.1| DNA-binding response regulator PhoB [Vibrio cholerae B33] gi|153827132|ref|ZP_01979799.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio cholerae MZO-2] gi|153831184|ref|ZP_01983851.1| DNA-binding response regulator PhoB [Vibrio cholerae 623-39] gi|227080898|ref|YP_002809449.1| DNA-binding response regulator PhoB [Vibrio cholerae M66-2] gi|229505665|ref|ZP_04395175.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio cholerae BX 330286] gi|229510663|ref|ZP_04400142.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio cholerae B33] gi|229513140|ref|ZP_04402606.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio cholerae TMA 21] gi|229517785|ref|ZP_04407229.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio cholerae RC9] gi|229523456|ref|ZP_04412863.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio cholerae TM 11079-80] gi|229525367|ref|ZP_04414772.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio cholerae bv. albensis VL426] gi|229530150|ref|ZP_04419540.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio cholerae 12129(1)] gi|229608683|ref|YP_002879331.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio cholerae MJ-1236] gi|254224992|ref|ZP_04918606.1| DNA-binding response regulator PhoB [Vibrio cholerae V51] gi|254285442|ref|ZP_04960406.1| DNA-binding response regulator PhoB [Vibrio cholerae AM-19226] gi|254847860|ref|ZP_05237210.1| DNA-binding response regulator PhoB [Vibrio cholerae MO10] gi|255744531|ref|ZP_05418482.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio cholera CIRS 101] gi|258623634|ref|ZP_05718625.1| DNA-binding response regulator PhoB [Vibrio mimicus VM573] gi|258626940|ref|ZP_05721742.1| DNA-binding response regulator PhoB [Vibrio mimicus VM603] gi|262161335|ref|ZP_06030446.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio cholerae INDRE 91/1] gi|262168827|ref|ZP_06036522.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio cholerae RC27] gi|262172206|ref|ZP_06039884.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio mimicus MB-451] gi|297581122|ref|ZP_06943046.1| DNA-binding response regulator PhoB [Vibrio cholerae RC385] gi|298499143|ref|ZP_07008950.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio cholerae MAK 757] gi|9655162|gb|AAF93884.1| DNA-binding response regulator PhoB [Vibrio cholerae O1 biovar El Tor str. N16961] gi|99031006|gb|ABF61789.1| DNA-binding response regulator PhoB [Vibrio cholerae O395] gi|121547266|gb|EAX57389.1| DNA-binding response regulator PhoB [Vibrio cholerae 2740-80] gi|121629123|gb|EAX61567.1| DNA-binding response regulator PhoB [Vibrio cholerae V52] gi|124114445|gb|EAY33265.1| DNA-binding response regulator PhoB [Vibrio cholerae 1587] gi|124120940|gb|EAY39683.1| DNA-binding response regulator PhoB [Vibrio cholerae MZO-3] gi|125622379|gb|EAZ50699.1| DNA-binding response regulator PhoB [Vibrio cholerae V51] gi|126510632|gb|EAZ73226.1| DNA-binding response regulator PhoB [Vibrio cholerae NCTC 8457] gi|126519353|gb|EAZ76576.1| DNA-binding response regulator PhoB [Vibrio cholerae B33] gi|146316533|gb|ABQ21072.1| DNA-binding response regulator PhoB [Vibrio cholerae O395] gi|148873340|gb|EDL71475.1| DNA-binding response regulator PhoB [Vibrio cholerae 623-39] gi|149738998|gb|EDM53310.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio cholerae MZO-2] gi|150424304|gb|EDN16241.1| DNA-binding response regulator PhoB [Vibrio cholerae AM-19226] gi|227008786|gb|ACP04998.1| DNA-binding response regulator PhoB [Vibrio cholerae M66-2] gi|227012543|gb|ACP08753.1| DNA-binding response regulator PhoB [Vibrio cholerae O395] gi|229333924|gb|EEN99410.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio cholerae 12129(1)] gi|229338948|gb|EEO03965.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio cholerae bv. albensis VL426] gi|229339819|gb|EEO04834.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio cholerae TM 11079-80] gi|229344500|gb|EEO09474.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio cholerae RC9] gi|229350033|gb|EEO14987.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio cholerae TMA 21] gi|229350628|gb|EEO15569.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio cholerae B33] gi|229357888|gb|EEO22805.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio cholerae BX 330286] gi|229371338|gb|ACQ61761.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio cholerae MJ-1236] gi|254843565|gb|EET21979.1| DNA-binding response regulator PhoB [Vibrio cholerae MO10] gi|255737562|gb|EET92956.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio cholera CIRS 101] gi|258580764|gb|EEW05711.1| DNA-binding response regulator PhoB [Vibrio mimicus VM603] gi|258584085|gb|EEW08843.1| DNA-binding response regulator PhoB [Vibrio mimicus VM573] gi|261893282|gb|EEY39268.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio mimicus MB-451] gi|262022945|gb|EEY41651.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio cholerae RC27] gi|262029085|gb|EEY47738.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio cholerae INDRE 91/1] gi|297534438|gb|EFH73275.1| DNA-binding response regulator PhoB [Vibrio cholerae RC385] gi|297543476|gb|EFH79526.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio cholerae MAK 757] gi|327483513|gb|AEA77920.1| Phosphate regulon transcriptional regulatory protein PhoB (SphR) [Vibrio cholerae LMA3894-4] Length = 229 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 36/222 (16%), Positives = 92/222 (41%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++++D A +++ + G + + D+ ++ L G G + Sbjct: 5 ILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSAMSKLAEPFPDLVLLDWMLPGGSGINL 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ + +P++ ++ + + + G DD + KP +E++AR+ A+ RR+ Sbjct: 65 IKHMKREEMTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIRRVT 124 Query: 121 VSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + ++ + + E ++L + M ++ + ++ Q+ + ++ Sbjct: 125 PTALEDVIDVQGLKLDPVSHRVTANDQPLDMGPTEFKMLHFFMTHQERVYSREQLLNNVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G + VE+ V+ HI +LRK L + + + R GY Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALEDAGHDKLIQTVRGAGYRF 225 >gi|298247083|ref|ZP_06970888.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297549742|gb|EFH83608.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 227 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 46/223 (20%), Positives = 89/223 (39%), Gaps = 9/223 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD A + +G + E D ++ G + Sbjct: 6 LIVDDDAAIAHLLRDFLKAEGFQVMVATDAEKALDTVQRTSVDCLVLDVM--MPGRSGFD 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRRL 119 L R IR S +P++ +S Y S + L F G DD + K E++ARV ++ Sbjct: 64 LCRHIRETSNLPILFLSAYDSDKEKLRGFGLGGDDYIAKSASPSEVVARVKAVLRRCQKE 123 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 K S++ G + + + ++G+ P RE +L + + + + Q+F +G Sbjct: 124 KPSSSMFNFGRLVIDPVAHEVLIEGQPLPFTTREFALLCFFAEHPRQVFTREQLFERFWG 183 Query: 180 LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 E + V HI ++R+K+ + + + R GY + Sbjct: 184 ---EIGDRQTVTVHIRRIREKIERDPADPHYIITVRGTGYRFE 223 >gi|312197966|ref|YP_004018027.1| transcriptional regulator [Frankia sp. EuI1c] gi|311229302|gb|ADP82157.1| two component transcriptional regulator, winged helix family [Frankia sp. EuI1c] Length = 233 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 48/225 (21%), Positives = 93/225 (41%), Gaps = 10/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD V D G ++ ++ R D+ ++ L G LE Sbjct: 5 LIVDDDPTVADVLSRYLQRAGYEVDLAADGHAALATAAATRPDLVVLDLML--PGLNGLE 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +R VP++ ++ + + + G DD V KP RE+ RV ++ RR Sbjct: 63 VCRRLRETGSVPVVMLTALGAEHDRIVGLEHGADDYVTKPFSPRELTLRVQSVLRRAAGP 122 Query: 123 NN-----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + GP V R+ + L RE +L YL+ + + ++ ++ A+ Sbjct: 123 PTSTAGGVIDVGPFTVDLPAREVRGENGTISLTVREFDLLAYLVRHPRRAFSRPELMEAV 182 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 +G +++ V HI +LR+KL + + + +GY + Sbjct: 183 WGW--SYGDQSTVTVHIRRLREKLEADPSSPSILVTVWGVGYRYE 225 >gi|47566185|ref|ZP_00237213.1| two-component response regulator [Bacillus cereus G9241] gi|47556738|gb|EAL15069.1| two-component response regulator [Bacillus cereus G9241] Length = 223 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 40/222 (18%), Positives = 83/222 (37%), Gaps = 7/222 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + ++ + G + + + D ++ L Sbjct: 7 LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETNHYDFVVLDIM--MPEMDGLS 64 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRLK 120 + + IR S VP+I ++ ++ G DD + KP E+ + Sbjct: 65 VCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTKQ 124 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + GPI + R E GE L +E +L +L + G+ ++ Q+ ++G Sbjct: 125 EQQEEIQFGPILINEKSRKIEADGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG- 183 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D A V++H+ +R KL + + +GY + Sbjct: 184 YDYAGSTRTVDTHVKTMRLKLGESGN--YIQTVWGVGYKFEV 223 >gi|224476783|ref|YP_002634389.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus carnosus subsp. carnosus TM300] gi|222421390|emb|CAL28204.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus carnosus subsp. carnosus TM300] Length = 238 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 46/231 (19%), Positives = 95/231 (41%), Gaps = 14/231 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + G +E E + + D+ ++ L + Sbjct: 5 ILVVDDEQSIVTLLKYNLETAGYIVEVAYDGEEALQKLDAVQPDLVVLDVML--PKLDGI 62 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ + IR+ VP++ ++ + + G DD + KP RE++ARV AI RR + Sbjct: 63 EVCKTIRSDKNLVPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRRSQ 122 Query: 121 VSNNRAETGPIRVF---------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + E + + E+ L +E +L YL+ +G+ + + Sbjct: 123 QVQSVKEDENDNEDVIIGSIKIRPEYFEVYKNNELLELTPKEFELLLYLIERQGRVITRE 182 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221 + ++++ ++ + +V+ HIS LR KL + + R LGY ++ Sbjct: 183 HMLNSVW-NYEFTGDSRIVDVHISHLRDKLEENPKQPKLIKTVRGLGYKLE 232 >gi|254387744|ref|ZP_05002982.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294817993|ref|ZP_06776635.1| Two component transcriptional regulator, winged helix family [Streptomyces clavuligerus ATCC 27064] gi|326446884|ref|ZP_08221618.1| two component transcriptional regulator, winged helix family protein [Streptomyces clavuligerus ATCC 27064] gi|197701469|gb|EDY47281.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294322808|gb|EFG04943.1| Two component transcriptional regulator, winged helix family [Streptomyces clavuligerus ATCC 27064] Length = 226 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 58/222 (26%), Positives = 100/222 (45%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G +G +++G L D ++ L G L Sbjct: 3 ILVVEDDPRLMELLCRGLGGEGFAVDGTGDGAHALELAQENEYDAIVLDVML--PGMNGL 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119 + +R + P++ ++ + D+G DD V KP + ++AR+ A + R Sbjct: 61 RVCARLRENRIWTPVLMLTARDGEYDEAEGLDTGADDYVTKPFSYIALVARLRALVRRGR 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + E G +RV R E G PL RE +L YL A RG+ VAKT+I ++G Sbjct: 121 RERPPVIEIGDLRVDPATRRCERSGTPVPLTAREFGVLWYLAAQRGEVVAKTEILDHVWG 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D + NVVE ++S LR+K+ G + + R GY ++ Sbjct: 181 --DFEGDVNVVEVYVSALRRKIDTPFGRRTIHTVRGAGYRLE 220 >gi|49483742|ref|YP_040966.1| response regulator protein [Staphylococcus aureus subsp. aureus MRSA252] gi|49486330|ref|YP_043551.1| response regulator protein [Staphylococcus aureus subsp. aureus MSSA476] gi|258437323|ref|ZP_05689307.1| response regulator protein [Staphylococcus aureus A9299] gi|258443528|ref|ZP_05691867.1| response regulator protein [Staphylococcus aureus A8115] gi|258446735|ref|ZP_05694889.1| response regulator protein [Staphylococcus aureus A6300] gi|258448650|ref|ZP_05696762.1| response regulator protein [Staphylococcus aureus A6224] gi|258451150|ref|ZP_05699185.1| response regulator protein [Staphylococcus aureus A5948] gi|258454266|ref|ZP_05702236.1| response regulator protein [Staphylococcus aureus A5937] gi|282892991|ref|ZP_06301225.1| transcriptional regulatory protein srrA [Staphylococcus aureus A8117] gi|282904072|ref|ZP_06311960.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp. aureus C160] gi|282905899|ref|ZP_06313754.1| two-component system OmpR family response regulator ResD [Staphylococcus aureus subsp. aureus Btn1260] gi|282919266|ref|ZP_06327001.1| two-component system, OmpR family, response regulator ResD [Staphylococcus aureus subsp. aureus C427] gi|282924741|ref|ZP_06332408.1| two-component system, OmpR family, response regulator ResD [Staphylococcus aureus A9765] gi|282928962|ref|ZP_06336549.1| transcriptional regulatory protein srrA [Staphylococcus aureus A10102] gi|283958254|ref|ZP_06375705.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp. aureus A017934/97] gi|49241871|emb|CAG40564.1| response regulator protein [Staphylococcus aureus subsp. aureus MRSA252] gi|49244773|emb|CAG43209.1| response regulator protein [Staphylococcus aureus subsp. aureus MSSA476] gi|257848528|gb|EEV72516.1| response regulator protein [Staphylococcus aureus A9299] gi|257850934|gb|EEV74877.1| response regulator protein [Staphylococcus aureus A8115] gi|257854310|gb|EEV77259.1| response regulator protein [Staphylococcus aureus A6300] gi|257857928|gb|EEV80817.1| response regulator protein [Staphylococcus aureus A6224] gi|257861205|gb|EEV84018.1| response regulator protein [Staphylococcus aureus A5948] gi|257863545|gb|EEV86303.1| response regulator protein [Staphylococcus aureus A5937] gi|282317076|gb|EFB47450.1| two-component system, OmpR family, response regulator ResD [Staphylococcus aureus subsp. aureus C427] gi|282331191|gb|EFB60705.1| two-component system OmpR family response regulator ResD [Staphylococcus aureus subsp. aureus Btn1260] gi|282589369|gb|EFB94460.1| transcriptional regulatory protein srrA [Staphylococcus aureus A10102] gi|282592748|gb|EFB97754.1| two-component system, OmpR family, response regulator ResD [Staphylococcus aureus A9765] gi|282595690|gb|EFC00654.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp. aureus C160] gi|282764309|gb|EFC04435.1| transcriptional regulatory protein srrA [Staphylococcus aureus A8117] gi|283790403|gb|EFC29220.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp. aureus A017934/97] Length = 247 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 35/232 (15%), Positives = 85/232 (36%), Gaps = 14/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ + + ++ + L ++ L + Sbjct: 11 ILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLML--PEMDGI 68 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112 ++ +R H Q P+I ++ ++ F+SG DD + KP RE + Sbjct: 69 QVATKLREHKQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQS 128 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + + + E + + +D + L +E +L YL K + Q Sbjct: 129 TTVEQSEPHARDVIEFKHLEIDNDAHRVLADNQEVNLTPKEYELLIYLAKTPNKVFDREQ 188 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKL--GFDPVDSKRFLGYSIDW 222 + ++ ++ + V++H+ +LR+KL + + +GY + Sbjct: 189 LLKEVW-HYEFYGDLRTVDTHVKRLREKLNRVSSEAAHMIQTVWGVGYKFEV 239 >gi|329923390|ref|ZP_08278872.1| response regulator MprA [Paenibacillus sp. HGF5] gi|328941282|gb|EGG37576.1| response regulator MprA [Paenibacillus sp. HGF5] Length = 232 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 53/230 (23%), Positives = 100/230 (43%), Gaps = 11/230 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A + +G + ++ S D+ ++ L G + Sbjct: 5 ILIVEDEAKISRLLEIELESEGYQVTKADNGLDALEAYRSQEVDLILLDVML--PGMSGI 62 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL R IRAH S ++ ++ S++ + D G +D + KP E+LAR+ A R Sbjct: 63 ELLRRIRAHDSHTAVLLLTAKSSVEDKVSGLDLGANDYITKPFQIEELLARIRAALRLQG 122 Query: 121 VSNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 E + R+ G L RE +L YL+ N+ + + + QI Sbjct: 123 KPLPEEEAAGEWLTAADLKLNEGTREVIRDGRRIDLTPREFDLLVYLLKNKRQVLNREQI 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 +A++G +D + NVV+ +I +RKK+ + + + + R +GY + N Sbjct: 183 LAAVWG-YDYYGDTNVVDVYIRYVRKKIDHGGTQELIHTVRGVGYVLKEN 231 >gi|300857935|ref|YP_003782918.1| two-component system transcriptional regulatory protein [Corynebacterium pseudotuberculosis FRC41] gi|300685389|gb|ADK28311.1| two-component system transcriptional regulatory protein [Corynebacterium pseudotuberculosis FRC41] gi|302330215|gb|ADL20409.1| Putative sensor kinase [Corynebacterium pseudotuberculosis 1002] Length = 225 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 42/220 (19%), Positives = 90/220 (40%), Gaps = 5/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + +G + + D+ ++ L G + Sbjct: 5 ILVVDDDPAISEMLTIVLEAEGFNTVAVTDGALAVETFNREEPDLVLLDLML--PGMNGI 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R+IR +S VP++ ++ + ++G DD + KP +E++AR+ A RR Sbjct: 63 DICRLIRQNSTVPIVMLTAKTDTVDVVLGLETGADDYITKPFKPKELIARLRARLRRTDD 122 Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + G EV L E +L L + G+ + ++ ++G Sbjct: 123 APADVIEISDLAIDVPGHVVSRGREVIQLTPLEFDLLLELASKPGQVFTREELLQKVWGY 182 Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219 + A + +V H+ +LR K+ + V + R +GY Sbjct: 183 RN-ASDTRLVNVHVQRLRAKIEKDPENPQIVLTVRGVGYK 221 >gi|114765354|ref|ZP_01444471.1| phosphate regulon transcriptional regulatory protein PhoB [Pelagibaca bermudensis HTCC2601] gi|114542334|gb|EAU45363.1| phosphate regulon transcriptional regulatory protein PhoB [Roseovarius sp. HTCC2601] Length = 229 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 55/223 (24%), Positives = 96/223 (43%), Gaps = 8/223 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D A ++ +G + + E + DV ++ L +E Sbjct: 9 LVVEDEASQREVLRYNLEAEGFRVAAAGNGEEALVMLDEEEPDVIVLDWML--PNLSGIE 66 Query: 63 LPRII---RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 + R I VP+I +S + ++G DD V KP RE++ARV A RR Sbjct: 67 VCRQIKTRPETRGVPVIMLSARSEEIDRVRGLETGADDYVVKPYSLRELMARVKAQLRRA 126 Query: 120 KVSNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + R E I + ++ G+ L E R+L M G+ ++ Q+ + Sbjct: 127 RPAAAGLRLEYDDIILDAETHRVTRDGQELKLGPTEFRLLSTFMEKPGRVWSREQLLDRV 186 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G D V+ V+ HI +LRK L G DP+ + R GY++ Sbjct: 187 WGR-DIYVDTRTVDVHIGRLRKALGIYGGGDPLRTVRGAGYAL 228 >gi|220906550|ref|YP_002481861.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 7425] gi|219863161|gb|ACL43500.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7425] Length = 243 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 46/228 (20%), Positives = 96/228 (42%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++ G ++ E D+ ++ Sbjct: 8 ILVVDDEASIRRILETRLSMIGYNVVTAADGEEALETFREEVPDLVVLDVM--MPKLDGY 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + +R S VP+I ++ + + + G DD V KP +E+ AR+ ++ RR++ Sbjct: 66 GVCQELRKESDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVEK 125 Query: 122 SNNRAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 ++ +R+ ++ R E L E +LE L++ G+ ++++I Sbjct: 126 TSTSGIPSSGVIAVSNLRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEAFSRSEIL 185 Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220 ++G + V+ VV+ HIS+LR KL + + + + R GY Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEEDPSNPELILTARGTGYLF 233 >gi|51891869|ref|YP_074560.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] gi|51855558|dbj|BAD39716.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] Length = 231 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 43/223 (19%), Positives = 82/223 (36%), Gaps = 6/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD +G ++ + + L S R D+ ++ Sbjct: 7 ILVADDDPKTLKVLEHALTAEGFAVIKASDGQEALDLALSQRPDLVILDVM--MPKVDGF 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + IRA S VP++ ++ + F G DD V KP E++ RV AI RR+ Sbjct: 65 AVCGRIRAASAVPILLLTARGDSVDKVVGFRLGADDYVTKPFDLNELVLRVHAILRRMPT 124 Query: 122 SNNRAETGPIR--VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + R V L RE +L + ++ G + + + ++ Sbjct: 125 LPESRTLRFGHLEINKSTRTVHVGDRNPELTPREFDLLWLMASHPGHPFTRESLLARVW- 183 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221 D +++ V I +LR+K+ + + + +GY D Sbjct: 184 HGDAPTDQSTVTVCIRRLREKIEDNPAQPRWIKTVWGIGYKFD 226 >gi|46908182|ref|YP_014571.1| DNA-binding response regulator ResD [Listeria monocytogenes serotype 4b str. F2365] gi|47093377|ref|ZP_00231144.1| DNA-binding response regulator ResD [Listeria monocytogenes str. 4b H7858] gi|226224553|ref|YP_002758660.1| two-component response regulator (ResD) [Listeria monocytogenes Clip81459] gi|254825556|ref|ZP_05230557.1| DNA-binding response regulator ResD [Listeria monocytogenes FSL J1-194] gi|254852850|ref|ZP_05242198.1| DNA-binding response regulator ResD [Listeria monocytogenes FSL R2-503] gi|254931880|ref|ZP_05265239.1| DNA-binding response regulator ResD [Listeria monocytogenes HPB2262] gi|254992998|ref|ZP_05275188.1| two-component response regulator (ResD) [Listeria monocytogenes FSL J2-064] gi|255520089|ref|ZP_05387326.1| two-component response regulator (ResD) [Listeria monocytogenes FSL J1-175] gi|300763740|ref|ZP_07073737.1| DNA-binding response regulator ResD [Listeria monocytogenes FSL N1-017] gi|46881452|gb|AAT04748.1| DNA-binding response regulator ResD [Listeria monocytogenes serotype 4b str. F2365] gi|47018248|gb|EAL09014.1| DNA-binding response regulator ResD [Listeria monocytogenes str. 4b H7858] gi|225877015|emb|CAS05724.1| Putative two-component response regulator (ResD) [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258606183|gb|EEW18791.1| DNA-binding response regulator ResD [Listeria monocytogenes FSL R2-503] gi|293583431|gb|EFF95463.1| DNA-binding response regulator ResD [Listeria monocytogenes HPB2262] gi|293594797|gb|EFG02558.1| DNA-binding response regulator ResD [Listeria monocytogenes FSL J1-194] gi|300515476|gb|EFK42526.1| DNA-binding response regulator ResD [Listeria monocytogenes FSL N1-017] gi|328466296|gb|EGF37453.1| two-component response regulator (ResD) [Listeria monocytogenes 1816] gi|328472790|gb|EGF43639.1| two-component response regulator (ResD) [Listeria monocytogenes 220] gi|332312389|gb|EGJ25484.1| Transcriptional regulatory protein resD [Listeria monocytogenes str. Scott A] Length = 238 Score = 154 bits (388), Expect = 1e-35, Method: Composition-based stats. Identities = 34/231 (14%), Positives = 89/231 (38%), Gaps = 14/231 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD ++ + +E + + + + +V ++ G+ +E Sbjct: 8 LVVDDEDRIRRLLKMYLERENYRIEEASDGDQALSMALNNNYEVILLDLM--MPGKDGIE 65 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARVA 113 + R +R P++ ++ + F+ G DD + KP RE A+ + Sbjct: 66 VCRELREFKSTPVVMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKAVLRRAKQS 125 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + +++ ++ V G+ L +E +L YL + K + + Sbjct: 126 SEESAGGTPGDIITFPHLKIDNEAHRVIVDGKEIGLTPKEYDLLYYLARSPDKVFDRESL 185 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLG--FDPVDSKRFLGYSIDW 222 ++ ++ + +++H+ +LR+KL + + + LGY + Sbjct: 186 LKEVW-RYEFFGDLRTIDTHVKRLREKLHDVSEDAARMIVTVWGLGYKFEV 235 >gi|283797227|ref|ZP_06346380.1| DNA-binding response regulator VicR [Clostridium sp. M62/1] gi|291075076|gb|EFE12440.1| DNA-binding response regulator VicR [Clostridium sp. M62/1] gi|295092411|emb|CBK78518.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Clostridium cf. saccharolyticum K10] Length = 232 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 46/228 (20%), Positives = 92/228 (40%), Gaps = 12/228 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD L+ G +G+ ++ E + D+ ++ L E Sbjct: 5 LVVDDEKLIVKGIRFSLEQEGMEVDCAYDGEEAIEMAREKEYDIVLLDVML--PKRDGFE 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + IR S++P+I ++ + + G DD + KP + E+ AR+ AI RR Sbjct: 63 VCQAIREFSEMPIIMLTAKGGDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRSTRR 122 Query: 123 NNRAETGPIRV--------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + R +D R + L +E +LE L+ N K ++ ++ Sbjct: 123 SRKDAQPQSRTITVGELKLDTDSRRVFIGDREINLTAKEFDLLELLVCNPNKVYSREELL 182 Query: 175 SAIYGLFDEAVEE-NVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++G + V+ H+ +LR+K+ V +K +GY Sbjct: 183 GYVWGNKAAGGGDVRTVDVHVRRLREKIEPSPSDPKYVHTKWGVGYYF 230 >gi|326202143|ref|ZP_08192013.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] gi|325987938|gb|EGD48764.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] Length = 231 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 44/229 (19%), Positives = 86/229 (37%), Gaps = 10/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D ++ ++ F S + D++ ++ Sbjct: 5 ILVVDDEKEIADLVELYLRNENYNIYKFYSPIEALKSIDEIKYDLAILDVM--MPVMDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 +L + IR P+I ++ + G DD + KP E++ARV A RR Sbjct: 63 KLCQKIREKYNFPVIMLTAKVEEMDKITGLTLGADDYITKPFSPLEMVARVKAQLRRFTR 122 Query: 122 SNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N + + + + + L E IL L NRG+ ++ ++F Sbjct: 123 YNEGIQQSNDILEVSSLIMNKTTHECSLNEQPLILTPTEFSILWILCENRGQVISSERLF 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222 ++G + N V HI LR+K++ + + +GY I+ Sbjct: 183 QEVWGEKYFSGSNNTVMVHIRHLREKMKEPEGNPKFIKTVWGVGYKIEK 231 >gi|315651506|ref|ZP_07904527.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986] gi|315486241|gb|EFU76602.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986] Length = 232 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 49/227 (21%), Positives = 95/227 (41%), Gaps = 11/227 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD L+ G D ++ + + D+ ++ L +E Sbjct: 6 LVVDDEKLIVKGIKFSLEQDDYEVDVAYDGKEALKMAKEKEYDIVLLDVML--PEMDGME 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + IR S++P+I ++ + + + G DD + KP + E+ AR+ AI RR Sbjct: 64 VCQAIREFSEMPIIMLTAKGTDMDKILGLEYGADDYITKPFNILEVKARIKAIIRRNSKK 123 Query: 123 NNRAETGPIRV-------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + + D R + + L +E ILE L N K ++ Q+ S Sbjct: 124 SKSVDKNERIIEISDLKLDLDSRRVFEKDKEINLTAKEFDILELLTQNPDKVYSREQLLS 183 Query: 176 AIYGLF-DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++G EA + V+ H+ +LR+K+ N + +K +GY Sbjct: 184 IVWGNKLHEAGDVRTVDVHVRRLREKIEPNPSEPKYIHTKWGVGYYF 230 >gi|116073054|ref|ZP_01470316.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. RS9916] gi|116068359|gb|EAU74111.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. RS9916] Length = 246 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 45/229 (19%), Positives = 95/229 (41%), Gaps = 11/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEW-LQSSAREDVSAIEAFLIGKGEKV 60 ++++D +++ +G S+ ++ L +E V I L+ G Sbjct: 18 LLVVEDDDSIRETVDEALQAEGFSVRSCSNGAEALANLTMGNQEPVDLIVLDLMLPGLGG 77 Query: 61 LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV------- 112 L++ R +R ++ P++ IS S + + G DD + KP RE++AR Sbjct: 78 LDVCRQLRGNNITTPILVISARDSETDRVLGLEVGADDYLVKPFGMRELVARCRALLRRT 137 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 ++ + +N + ++ + G+ L +E +ILE M + + ++ Q Sbjct: 138 QQKPQQDEQRSNVLSHDNLCLYPEECRVTRDGQELTLSPKEYKILELFMQHPKRVWSRDQ 197 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + ++G+ D + V+ HI LR+K+ + + R GY Sbjct: 198 LLEKVWGI-DFVGDTKTVDVHIRWLREKIESEPSSPKHIRTVRGFGYRF 245 >gi|34496017|ref|NP_900232.1| phosphate regulon transcriptional regulatory protein phoB [Chromobacterium violaceum ATCC 12472] gi|34101870|gb|AAQ58238.1| phosphate regulon transcriptional regulatory protein phoB [Chromobacterium violaceum ATCC 12472] Length = 229 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 45/222 (20%), Positives = 89/222 (40%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +L++D +++ G + + E L +A D+ ++ L G G V Sbjct: 5 ILLVEDEPAIQELIAFNLAQAGHHVLRAGTAEAALTLVRNALPDLVLLDWMLPGASGIDV 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118 + R +P+I ++ Q + ++G DD + KP RE+ + R Sbjct: 65 AKRLRADERTRHIPIIMLTARSDEQDKVAGLETGADDYITKPFSPRELLARIKAVLRRRA 124 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 +++++ + +R+ G V L E R+L + M + + ++ Q+ ++ Sbjct: 125 PQMTDDAVDVQGLRLDPVTHRVTGNGSVIELGPTEFRLLHFFMTHPERVHSRAQLLDQVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G VEE V+ HI +LR L + + R GY Sbjct: 185 GDH-VFVEERTVDVHIRRLRSALEGTQHDGLIQTVRGTGYRF 225 >gi|89896744|ref|YP_520231.1| hypothetical protein DSY3998 [Desulfitobacterium hafniense Y51] gi|89336192|dbj|BAE85787.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 230 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 50/226 (22%), Positives = 93/226 (41%), Gaps = 9/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L+DD + + A +G + + L D+ ++ L G Sbjct: 3 ILLVDDEKNISNVLKAYLQQEGFHVTTAVNGLVALTLFKENSYDLVLLDLML--PGLSGE 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116 E+ R IR S P+I ++ L+ L + G DD + KP RE++AR Sbjct: 61 EICREIRKISATPVIMLTAKVELEDRLQGLNLGADDYIGKPFSPREVVARIKAVLRRTHI 120 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 ++++ + + + + +Q EV L E +IL L G+ ++ Q+ Sbjct: 121 ETSLLADSITYDNGLTIDNAQHEVRLQEEVISLTPTEFKILGALAKYPGRVYSRGQLVQI 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + G D +E V+++HI KLR+KL + + +GY + Sbjct: 181 VQG-HDFGGDERVIDAHIKKLRQKLERVPSDPKIILTVYGVGYKFN 225 >gi|152974106|ref|YP_001373623.1| two component transcriptional regulator [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152022858|gb|ABS20628.1| two component transcriptional regulator, winged helix family [Bacillus cytotoxicus NVH 391-98] Length = 238 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 40/227 (17%), Positives = 89/227 (39%), Gaps = 12/227 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++ DD ++D + +++ E L + ++ ++ +E Sbjct: 7 LIADDEKEIRDLLKKYLERELYTVDTAIDGEEALKLFTHNTYNLVILDLM--MPKIDGIE 64 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119 + R +R ++ +P++ ++ + G DD + KP E++AR+ A+ RR Sbjct: 65 VCRRLRNNTNIPILMLTAKDQEVDKIVGLSIGADDYITKPFSVNEVIARIKALMRRFLVL 124 Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + V + L +E +L++ +N + KTQ+F Sbjct: 125 GSNANTQEKTILTFKGLTIDISKYIVTVGDKEISLTGKELELLKFFASNPEQVFTKTQLF 184 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++ + ++N V HI KLRKK+ + + + +GY Sbjct: 185 RNVWD-SNYIEDDNTVMVHIRKLRKKIEADPSNPKFIQTVWGIGYKF 230 >gi|126697149|ref|YP_001092035.1| two-component response regulator [Prochlorococcus marinus str. MIT 9301] gi|126544192|gb|ABO18434.1| two-component response regulator [Prochlorococcus marinus str. MIT 9301] Length = 248 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 53/231 (22%), Positives = 96/231 (41%), Gaps = 16/231 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V + G + + E D+ ++ L Sbjct: 6 ILVVDDEPAVLKVLVTRLQLAGYQVYSATNGEEAIESFHRDSPDLIVLDVML--PKMDGF 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R IRA S VP+I ++ ++ + D G DD ++KP +E+ AR+A I RR+ Sbjct: 64 AVCRRIRAESVVPIIFLTALEAISERVAGLDLGADDYLSKPFSPKELEARIATILRRMGP 123 Query: 122 S------------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 S + G + V ++ R G+ L E +LE L GK V Sbjct: 124 SISVTETKEVPSGKGVMKFGSLVVDTNRRQVSRAGDRISLTYTEFSLLELLFDEPGKVVP 183 Query: 170 KTQIFSAIYG-LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218 + +I ++G A + VV+ ++++LR KL + + + + R +GY Sbjct: 184 RAEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 234 >gi|154486694|ref|ZP_02028101.1| hypothetical protein BIFADO_00515 [Bifidobacterium adolescentis L2-32] gi|154084557|gb|EDN83602.1| hypothetical protein BIFADO_00515 [Bifidobacterium adolescentis L2-32] Length = 234 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 55/230 (23%), Positives = 104/230 (45%), Gaps = 13/230 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++ + +G + + E L + D+ ++ L G Sbjct: 4 ILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGGIDLVLLDLML--PGLDGT 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R IR S+VP+I ++ + + + G DD + KP RE+LAR+ A+ RR ++ Sbjct: 62 ALCRRIREQSRVPIIMLTAKSAEIDKVVGLEIGADDYITKPYSFRELLARIRAVLRRNQM 121 Query: 122 ---------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + G I + + V+GE P +E +LEYLM N+G+ + + Q Sbjct: 122 VAESGEAADDDIPLVCGDISMRIGQHEVTVRGENVFFPLKEFELLEYLMQNKGRVMTRHQ 181 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221 + I+G D + ++ H+ ++R K+ + + + R LGY ID Sbjct: 182 LIDRIWG-SDYVGDTKTLDVHVKRVRAKIEEDPGHPKYLTTVRGLGYKID 230 >gi|13324642|gb|AAK18824.1|AF327739_1 response regulator Rr1 [Streptococcus thermophilus] Length = 235 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 48/231 (20%), Positives = 94/231 (40%), Gaps = 15/231 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + + + D+ ++ L L Sbjct: 4 ILVVDDERPISDIIKFNLTKEGYEVVTAFDGREALEQFEAKKPDLVILDLML--PELDGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IR S P+I +S S + + G DD V KP +RE+LAR+ A RR + Sbjct: 62 EIVKEIRKTSHTPIIMLSAKDSEFDKVVGLEIGADDYVTKPFSNRELLARIKAHLRRTET 121 Query: 122 SNNRAETGPI-----------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 E + D + +G L RE +L +L + G+ + + Sbjct: 122 IETAVEESSNSGKQEISIGELIIVPDAFVAKKRGNEVELTHREFELLFHLATHMGQVMTR 181 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + ++G +D + V+ I +LR+K+ + + + ++R +GY + Sbjct: 182 EHLLETVWG-YDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYM 231 >gi|312875838|ref|ZP_07735828.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor lactoaceticus 6A] gi|311797319|gb|EFR13658.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor lactoaceticus 6A] Length = 232 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 40/229 (17%), Positives = 93/229 (40%), Gaps = 11/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + +G + +S + + D+ ++ + Sbjct: 4 ILIVDDEQHILELLKFNLRKEGYNTFEADSGVLALEILKHNKVDLVILDIM--MSDKDGY 61 Query: 62 ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AA 114 E+ + IR + P+I +S + + G DD + KP +E++ RV Sbjct: 62 EVLKEIRFNRDTKNLPVILLSAKSEEIDKILGLELGADDYITKPFSVKELVVRVKALLRR 121 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + ++ + G + V R + + L +E +L+ L+ N+G+ + + I Sbjct: 122 VESLKPEVEDKVKFGDVEVDFSKRTVKKNNQDVSLSFKEFELLKLLIENKGRVLDRDFIL 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222 ++G ++ + V+ HI LR+KL + +++ R +GY + Sbjct: 182 QRVWG-YEFDGDTRTVDVHIRFLRRKLEDDEKNPRYIETVRGVGYRFNE 229 >gi|257793569|ref|ZP_05642548.1| response regulator protein [Staphylococcus aureus A9781] gi|258407189|ref|ZP_05680337.1| response regulator protein [Staphylococcus aureus A9763] gi|258420275|ref|ZP_05683223.1| response regulator protein [Staphylococcus aureus A9719] gi|282908809|ref|ZP_06316627.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WW2703/97] gi|282911128|ref|ZP_06318930.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WBG10049] gi|257787541|gb|EEV25881.1| response regulator protein [Staphylococcus aureus A9781] gi|257841216|gb|EEV65662.1| response regulator protein [Staphylococcus aureus A9763] gi|257843738|gb|EEV68139.1| response regulator protein [Staphylococcus aureus A9719] gi|282324823|gb|EFB55133.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WBG10049] gi|282327073|gb|EFB57368.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WW2703/97] Length = 244 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 35/232 (15%), Positives = 85/232 (36%), Gaps = 14/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ + + ++ + L ++ L + Sbjct: 8 ILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLML--PEMDGI 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112 ++ +R H Q P+I ++ ++ F+SG DD + KP RE + Sbjct: 66 QVATKLREHKQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQS 125 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + + + E + + +D + L +E +L YL K + Q Sbjct: 126 TTVEQSEPHARDVIEFKHLEIDNDAHRVLADNQEVNLTPKEYELLIYLAKTPNKVFDREQ 185 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKL--GFDPVDSKRFLGYSIDW 222 + ++ ++ + V++H+ +LR+KL + + +GY + Sbjct: 186 LLKEVW-HYEFYGDLRTVDTHVKRLREKLNRVSSEAAHMIQTVWGVGYKFEV 236 >gi|218533059|ref|YP_002423875.1| two component transcriptional regulator PhoB, winged helix family [Methylobacterium chloromethanicum CM4] gi|240141569|ref|YP_002966049.1| phosphate regulon transcriptional regulatory protein PhoB [Methylobacterium extorquens AM1] gi|254564081|ref|YP_003071176.1| phosphate regulon transcriptional regulatory protein PhoB [Methylobacterium extorquens DM4] gi|218525362|gb|ACK85947.1| two component transcriptional regulator PhoB, winged helix family [Methylobacterium chloromethanicum CM4] gi|240011546|gb|ACS42772.1| phosphate regulon transcriptional regulatory protein PhoB [Methylobacterium extorquens AM1] gi|254271359|emb|CAX27372.1| phosphate regulon transcriptional regulatory protein PhoB [Methylobacterium extorquens DM4] Length = 234 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 52/226 (23%), Positives = 95/226 (42%), Gaps = 8/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G ++ + + D+ ++ + G + Sbjct: 6 ILIVEDEESLTTLLRYNLEAEGFQVDVAVRGDEADLRLHETTPDLVLLDWMV--PGLSGI 63 Query: 62 ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IY 116 EL R IRA + P+I ++ + +G DD V KP E+LARV A Sbjct: 64 ELCRRIRARRETERLPVIMLTARGEETDRVRGLSTGADDYVVKPFSVPELLARVRALLRR 123 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + ++ G I + QG L E ++LEYLM + G+ ++ Q+ Sbjct: 124 AKPTHVSDMLVAGDIELDRVSHRIRRQGREIHLGPTEFKLLEYLMQSPGRVFSREQLLDG 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 ++G D ++E V+ H+ +LRK + DP+ + R GYS D Sbjct: 184 VWG-HDVYIDERTVDVHVGRLRKAINRPRQSDPIRTVRGSGYSFDE 228 >gi|196047031|ref|ZP_03114250.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|196022135|gb|EDX60823.1| DNA-binding response regulator [Bacillus cereus 03BB108] Length = 225 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 36/222 (16%), Positives = 94/222 (42%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ +G + + D+ ++ Sbjct: 5 ILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINEVKVDMVILDIM--MPNMDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ +R + +P++ ++ + F G DD + KP E++ RV A+ +R ++ Sbjct: 63 DVCFELRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 122 Query: 122 SNNRAETGPIR-VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + +++ + + + + LP +E +L L + G+ ++ Q+ ++G Sbjct: 123 TVSQSIQVGTVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG- 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D E ++ HI++LR+K + + + + R LGY ++ Sbjct: 182 YDFEGNERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLEV 223 >gi|284993022|ref|YP_003411576.1| winged helix family two component transcriptional regulator [Geodermatophilus obscurus DSM 43160] gi|284066267|gb|ADB77205.1| two component transcriptional regulator, winged helix family [Geodermatophilus obscurus DSM 43160] Length = 240 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 55/225 (24%), Positives = 102/225 (45%), Gaps = 10/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ A G + + +S R D+ ++ G Sbjct: 14 LLVVDDEPNIRELLSASLRYAGFEVATAADGHQALAMAASFRPDLLVLDVM--MPGLDGF 71 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R +R + P++ ++ + + + G DD V KP E+LAR+ A+ RR Sbjct: 72 GVVRRLRESGRHTPVLFLTARDAAEDKVSGLTLGGDDYVTKPFSLDEVLARIRAVLRRST 131 Query: 121 VSNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 AE+ + + + GEV L E ++L YLMAN G+ ++K QI Sbjct: 132 GPQRPAESPRLSFADIELDEESHEVVKAGEVVSLSPTEFKLLRYLMANAGRVLSKAQILD 191 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +D + NVVES+IS LR+K+ + + + R +GY++ Sbjct: 192 HVW-NYDFNGDANVVESYISYLRRKV-DTTEPRLLHTIRGVGYTL 234 >gi|298293994|ref|YP_003695933.1| two component transcriptional regulator [Starkeya novella DSM 506] gi|296930505|gb|ADH91314.1| two component transcriptional regulator, winged helix family [Starkeya novella DSM 506] Length = 233 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 50/226 (22%), Positives = 99/226 (43%), Gaps = 8/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G +++ + E + D+ ++ L G + Sbjct: 5 ILIVEDEEPLTLLLRYNLESEGYAVDSVGRGDEAETRLRESVPDLLILDWML--PGLSGI 62 Query: 62 ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IY 116 EL R +RA ++P++ ++ + +G DD V KP E++ARV A Sbjct: 63 ELCRRLRARPETERMPILMLTARGEETERVRGLATGADDYVVKPFSVPELVARVRALLRR 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + + G I + + + G L E R+LE+LM + G+ ++ Q+ Sbjct: 123 AKPEHISTLLRAGDIELDRETKRVHRAGRELHLGPTEFRLLEFLMQSPGRVYSREQLLDG 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 ++G D ++E V+ H+ +LRK L DP+ + R GYS + Sbjct: 183 VWGQ-DVYIDERTVDVHVGRLRKALNRPRQPDPIRTVRGSGYSFNE 227 >gi|237736365|ref|ZP_04566846.1| DNA-binding response regulator [Fusobacterium mortiferum ATCC 9817] gi|229421407|gb|EEO36454.1| DNA-binding response regulator [Fusobacterium mortiferum ATCC 9817] Length = 219 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 47/223 (21%), Positives = 96/223 (43%), Gaps = 9/223 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD ++ +G ++ E S D+ ++ Sbjct: 4 ILVIDDEWKIRKLIKDYLVREGYIVDEAGDGEEGIEKFFSNIYDIVILDIM--MPKIDGW 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119 + R IR SQVP+I ++ L FD D+ + KP + + ++A+V A Sbjct: 62 SVCRKIREESQVPIIMLTARADESDQLFGFDLETDEYMVKPFNPKLLVAKVKALLRRDGK 121 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + G + + R+ ++ V L +E +L + + N+G +++ +I ++++G Sbjct: 122 IIDKAPMVFGDLAIDGIKREVRLKDVVLDLTPKEYDLLYFFVENKGIALSREKILNSVWG 181 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D + V++HI +LRKK+ +K V + R GY + Sbjct: 182 -WDYFGDSRTVDTHIKRLRKKIGDK----YVQTVRGFGYKFEE 219 >gi|229009770|ref|ZP_04166991.1| hypothetical protein bmyco0001_2410 [Bacillus mycoides DSM 2048] gi|228751506|gb|EEM01311.1| hypothetical protein bmyco0001_2410 [Bacillus mycoides DSM 2048] Length = 266 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 42/228 (18%), Positives = 89/228 (39%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD ++D + ++ + E L + ++ ++ + Sbjct: 35 ILIADDDKEIRDLLKRYLERELYMVDTAINGEEALCLFNKNNYNLVILDLM--MPKVDGI 92 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R + +P++ ++ + G DD + KP E++ARV A+ RR V Sbjct: 93 EVCRKLRDTTNIPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKALMRRFLV 152 Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + G+ L +E +L++ +N + KTQ+ Sbjct: 153 LGSNTNVQEKTALTFKGLTIDFKKYTVHTNGKEINLTGKELELLKFFASNPEQVFTKTQL 212 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 F ++ + ++N V HI KLRKK+ + + + +GY Sbjct: 213 FRNVWD-DNYIEDDNTVMVHIRKLRKKIEIDSSNPKFIQTVWGIGYKF 259 >gi|212638357|ref|YP_002314877.1| OmpR family DNA-binding response regulator [Anoxybacillus flavithermus WK1] gi|212559837|gb|ACJ32892.1| DNA-binding response regulator, OmpR family (REC-wHTH domains) [Anoxybacillus flavithermus WK1] Length = 261 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 43/231 (18%), Positives = 88/231 (38%), Gaps = 14/231 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + G + E R D ++ L +E Sbjct: 29 LVVDDEQSIVTLLEYNLKQAGFIVLTAYDGEEGLHKALEERPDFIILDLML--PKLDGIE 86 Query: 63 LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112 + + +R P++ ++ + + G DD + KP RE + Sbjct: 87 VCKQLRQQKVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRRTVI 146 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + S++ G + +F D + + L +E +L YL +G+ + + Q Sbjct: 147 HGQEEKQEHSDDSLVVGQLEIFPDRYEAYFAQKRLELTPKEFELLAYLAKYKGRVLTRDQ 206 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 + SA++ +D A + +V+ HIS LR K+ + + R LGY ++ Sbjct: 207 LLSAVW-NYDFAGDTRIVDVHISHLRDKIEQDTRKPVYIKTIRGLGYKLEE 256 >gi|206970599|ref|ZP_03231551.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|228952360|ref|ZP_04114448.1| DNA-binding response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228964973|ref|ZP_04126075.1| DNA-binding response regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|229043749|ref|ZP_04191451.1| DNA-binding response regulator [Bacillus cereus AH676] gi|229069533|ref|ZP_04202822.1| DNA-binding response regulator [Bacillus cereus F65185] gi|229079163|ref|ZP_04211712.1| DNA-binding response regulator [Bacillus cereus Rock4-2] gi|229109448|ref|ZP_04239042.1| DNA-binding response regulator [Bacillus cereus Rock1-15] gi|229178389|ref|ZP_04305758.1| DNA-binding response regulator [Bacillus cereus 172560W] gi|229190087|ref|ZP_04317093.1| DNA-binding response regulator [Bacillus cereus ATCC 10876] gi|206734235|gb|EDZ51405.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|228593416|gb|EEK51229.1| DNA-binding response regulator [Bacillus cereus ATCC 10876] gi|228605119|gb|EEK62571.1| DNA-binding response regulator [Bacillus cereus 172560W] gi|228674015|gb|EEL29265.1| DNA-binding response regulator [Bacillus cereus Rock1-15] gi|228704180|gb|EEL56617.1| DNA-binding response regulator [Bacillus cereus Rock4-2] gi|228713672|gb|EEL65558.1| DNA-binding response regulator [Bacillus cereus F65185] gi|228725602|gb|EEL76857.1| DNA-binding response regulator [Bacillus cereus AH676] gi|228794714|gb|EEM42218.1| DNA-binding response regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|228807356|gb|EEM53887.1| DNA-binding response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 228 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 37/222 (16%), Positives = 92/222 (41%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ +G + D+ ++ Sbjct: 8 ILIVDDDPHIRELVSVFLEREGFQTYEAIDGVDALQKMDDVKVDMVILDIM--MPNMDGF 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ +R + +P++ ++ + F G DD + KP E++ RV A+ +R ++ Sbjct: 66 DVCFELRKYYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 125 Query: 122 SNNRAETGPIR-VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + +++ + + + LP +E +L L + G+ ++ Q+ I+G Sbjct: 126 TVSQSIQVGNVLLNRKTFEVTSGEQTVTLPLKEFELLFTLGSKSGRTCSREQLIEEIWG- 184 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D E ++ HI++LR+K + + + + R LGY ++ Sbjct: 185 YDFEGNERTLDVHINRLREKFQEEQSKFSIKTIRGLGYRLEV 226 >gi|158340654|ref|YP_001521822.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] gi|158310895|gb|ABW32508.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] Length = 247 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 46/228 (20%), Positives = 93/228 (40%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ G + + D+ ++ Sbjct: 15 ILVVDDEGPIRRILDTRLSMMGYHVFTAADGVEALEIFDRQHPDLIVLDVM--MPRLDGY 72 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R IR S+VP+I ++ + + + G DD + KP +E+ +RV I RR+ Sbjct: 73 GVCRAIRKTSRVPIIMLTALSEVGDRVTGLEMGADDYMVKPFSPKELESRVRCIIRRMGS 132 Query: 122 SNNRAETGPI-------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 R+ ++ R E L E +LE L + G V++ ++ Sbjct: 133 LKPFNYRVTGVLNIGSLRIDTNKRKVFRGQERIILTHMEFSLLELLASTPGAVVSRQELL 192 Query: 175 SAIYGLFD-EAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220 ++G + V+ VV+ H+S+LR KL+ +G + + + R +GY++ Sbjct: 193 EKVWGYSNGTIVDSRVVDVHVSRLRNKLKANQVGTELIHTIRGVGYTL 240 >gi|302559898|ref|ZP_07312240.1| DNA-binding response regulator [Streptomyces griseoflavus Tu4000] gi|302477516|gb|EFL40609.1| DNA-binding response regulator [Streptomyces griseoflavus Tu4000] Length = 244 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 48/229 (20%), Positives = 89/229 (38%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V++ +G E ++ R D+ ++ L Sbjct: 13 ILIVDDEPAVREALQRSLAFEGYGTEVAVDGADALEKAAAYRPDLVVLDI--QMPRMDGL 70 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 R IRA P++ ++ ++ + D+G DD + KP E+ AR+ A+ RR Sbjct: 71 TAARRIRATGDTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSS 130 Query: 121 VSNNRAETGPIR---------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + A + R+ L R E +LE MA+ + + + Sbjct: 131 YAAAVAGAAEENDVLTFADLRMDLATREVTRGSRQVELTRTEFTLLEMFMAHPRQVLTRE 190 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 QI A++G FD N ++ ++ LR+K V + R +GY + Sbjct: 191 QILKAVWG-FDFEPSSNSLDVYVMYLRRKTEAAGEPRLVHTVRGVGYVL 238 >gi|169826328|ref|YP_001696486.1| putative sensory transduction protein [Lysinibacillus sphaericus C3-41] gi|168990816|gb|ACA38356.1| Hypothetical sensory transduction protein [Lysinibacillus sphaericus C3-41] Length = 229 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 44/226 (19%), Positives = 90/226 (39%), Gaps = 7/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + +G ++ + D+ ++ L + Sbjct: 5 ILIIEDEENIARVLQLELQFEGYEAVIAHTGADGLLQYREEQWDLILLDIML--PEMSGI 62 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYR 117 ++ + IRA S+ P+I ++ ++ + D G +D V KP E + + Sbjct: 63 DVLKRIRATESKTPVIMLTAKSEVEDKVKGLDLGANDYVTKPFEIEELLARIRNALRFSQ 122 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + G + + R+ G+ L RE +L YLM + + + + QI + Sbjct: 123 NASPTKVGVSFGQLSINEQTREVIYYGKEIQLTPREYDLLLYLMKHPKQVLTREQILETV 182 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 +G FD + NVV+ +I +R+KL + + R +GY + N Sbjct: 183 WG-FDYYGDTNVVDVYIRYVRQKLEIANATPIIQTVRGVGYVLKEN 227 >gi|23100907|ref|NP_694374.1| two-component response regulator [Oceanobacillus iheyensis HTE831] gi|22779141|dbj|BAC15408.1| two-component response regulator [Oceanobacillus iheyensis HTE831] Length = 233 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 50/226 (22%), Positives = 99/226 (43%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + N + L S + ++ ++ L G+ Sbjct: 5 ILVVDDEQPIADILQFNLEKEGYQVVVANDGDTAIELAESEKPNLILLDIML--PGKDGN 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R +P+I ++ + + + G DD V KP +RE++ARV A RR +V Sbjct: 63 EVLREVRKTQNIPVIMLTAKDAEIDKVLGLELGADDYVTKPFSNRELIARVKANLRREQV 122 Query: 122 SNNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + +T V D +GE L RE +L YL + G+ + + + Sbjct: 123 PDETVKTTKDIVIGDLIVHPDAYVVSRKGEEIELTHREFELLHYLARHIGQVMTREHLLE 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++G +D + V+ + +LR+K+ + ++R +GY + Sbjct: 183 TVWG-YDYFGDVRTVDVTVRRLREKIEENPSNPLWIVTRRGVGYYL 227 >gi|258541416|ref|YP_003186849.1| PhoB family transcriptional regulator [Acetobacter pasteurianus IFO 3283-01] gi|256632494|dbj|BAH98469.1| two component response regulator PhoB [Acetobacter pasteurianus IFO 3283-01] gi|256635551|dbj|BAI01520.1| two component response regulator PhoB [Acetobacter pasteurianus IFO 3283-03] gi|256638606|dbj|BAI04568.1| two component response regulator PhoB [Acetobacter pasteurianus IFO 3283-07] gi|256641660|dbj|BAI07615.1| two component response regulator PhoB [Acetobacter pasteurianus IFO 3283-22] gi|256644715|dbj|BAI10663.1| two component response regulator PhoB [Acetobacter pasteurianus IFO 3283-26] gi|256647770|dbj|BAI13711.1| two component response regulator PhoB [Acetobacter pasteurianus IFO 3283-32] gi|256650823|dbj|BAI16757.1| two component response regulator PhoB [Acetobacter pasteurianus IFO 3283-01-42C] gi|256653814|dbj|BAI19741.1| two component response regulator PhoB [Acetobacter pasteurianus IFO 3283-12] Length = 229 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 51/223 (22%), Positives = 91/223 (40%), Gaps = 6/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + G ++ E R D+ ++ L G L Sbjct: 6 LLVVEDDPALSRLIGYNLEKQGYAVRVVGDGEAALEQVRQKRPDLLLLDWML--PGISGL 63 Query: 62 ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 E+ R +R + P++ +S T+ D+G DD + KP + ARV A+ RR Sbjct: 64 EVCRQLRGQPKTATLPIVMLSARGEETDTIRGLDTGADDYLVKPFSMEALFARVKAMLRR 123 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 L ++ + + E G + L E R+LE+ M N GK ++ ++ + Sbjct: 124 LPPADKTLRFDTLVMDRVSHKVERSGRLLALGPTEYRLLEFFMLNPGKVFSREELLKHAW 183 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 VE V+ HI +LR+ L D + + R GY++D Sbjct: 184 -ERSSFVELRTVDVHIRRLRQTLNEGDEQDLIRTVRARGYALD 225 >gi|78211661|ref|YP_380440.1| two component transcriptional regulator [Synechococcus sp. CC9605] gi|78196120|gb|ABB33885.1| two component transcriptional regulator, winged helix family [Synechococcus sp. CC9605] Length = 253 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 51/231 (22%), Positives = 96/231 (41%), Gaps = 16/231 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A V+ + G + E + + D+ ++ L Sbjct: 13 ILVVDDEAAVRRVLVMRLQLSGYRVICAEDGEEALEMYHNESPDLVVLDVML--PKLDGF 70 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R +RA S VP+I +S ++ + D G DD + KP +E+ AR++ I RR+ Sbjct: 71 AVCRRLRAESCVPIIFLSAVEAISERVAGLDLGADDYLPKPFSPKELEARISTILRRVGR 130 Query: 122 SNNRAETGPIRV------------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 N E+ + ++ R E L E +LE L + G V Sbjct: 131 GNAVIESRELPTGQGVLRLGDLVVDTNRRQVTRGSERINLTYTEFSLLELLFRDPGHVVP 190 Query: 170 KTQIFSAIYG-LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218 + +I ++G A + VV+ ++++LR KL + + + + R +GY Sbjct: 191 RAEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 241 >gi|55823082|ref|YP_141523.1| response regulator [Streptococcus thermophilus CNRZ1066] gi|55739067|gb|AAV62708.1| response regulator (homolog to RR02/MicA Spn & RR02 Sth &VicR Spy) [Streptococcus thermophilus CNRZ1066] Length = 235 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 48/231 (20%), Positives = 94/231 (40%), Gaps = 15/231 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + + + D+ ++ L L Sbjct: 4 ILVVDDERPISDIIKFNLTKEGYEVVTAFDGREALEQFEAKKPDLVILDLML--PELDGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IR S P+I +S S + + G DD V KP +RE+LAR+ A RR + Sbjct: 62 EIVKEIRKTSHTPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARIKAHLRRTET 121 Query: 122 SNNRAETGPI-----------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 E + D + +G L RE +L +L + G+ + + Sbjct: 122 IETAVEESSNSGKQEISIGELIIVPDAFVAKKRGNEVELTHREFELLFHLATHMGQVMTR 181 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + ++G +D + V+ I +LR+K+ + + + ++R +GY + Sbjct: 182 EHLLETVWG-YDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYM 231 >gi|228951779|ref|ZP_04113878.1| Two-component response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229177806|ref|ZP_04305179.1| Two-component response regulator [Bacillus cereus 172560W] gi|228605597|gb|EEK63045.1| Two-component response regulator [Bacillus cereus 172560W] gi|228807901|gb|EEM54421.1| Two-component response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 218 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 40/222 (18%), Positives = 83/222 (37%), Gaps = 7/222 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + ++ + G + + + D ++ L Sbjct: 2 LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIM--MPEMDGLS 59 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRLK 120 + + IR S VP+I ++ ++ G DD + KP E+ + Sbjct: 60 VCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYTKQ 119 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + GPI + R E GE L +E +L +L + G+ ++ Q+ ++G Sbjct: 120 EQQEEIQFGPILINEKSRRIEANGESISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG- 178 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D A V++H+ +R KL + + +GY + Sbjct: 179 YDYAGSTRTVDTHVKTMRLKLGESGN--YIQTVWGVGYKFEV 218 >gi|331002565|ref|ZP_08326081.1| hypothetical protein HMPREF0491_00943 [Lachnospiraceae oral taxon 107 str. F0167] gi|330408293|gb|EGG87769.1| hypothetical protein HMPREF0491_00943 [Lachnospiraceae oral taxon 107 str. F0167] Length = 235 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 38/231 (16%), Positives = 81/231 (35%), Gaps = 14/231 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + + E + + ++ L G Sbjct: 7 ILIVDDDENIAELISLYLMKECYETKIVGDGESALADFDEFKPHLILLDLML--PGIDGY 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH----------HREILAR 111 ++ R IRA S P+I +S + + + G DD + KP Sbjct: 65 QVCREIRAKSGTPIIMLSAKGEVFDKVLGLELGADDYMIKPFDSKELIARVKAVIRRYHS 124 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 L E + V G+ +P +E +L +L ++ + + Sbjct: 125 SNISIPDLHNGGEYVEYPDLVVNITNYAVTYLGKNVEMPPKELELLYFLSSHPNQVFTRE 184 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 Q+ I+G ++ + V+ HI +LR+K+ + F + + +GY + Sbjct: 185 QLLDNIWG-YEYIGDTRTVDVHIKRLREKIHDN-QFWSISTVWGIGYKFEV 233 >gi|315282989|ref|ZP_07871272.1| transcriptional regulatory protein ResD [Listeria marthii FSL S4-120] gi|313613360|gb|EFR87221.1| transcriptional regulatory protein ResD [Listeria marthii FSL S4-120] Length = 238 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 34/230 (14%), Positives = 89/230 (38%), Gaps = 14/230 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD ++ + +E + + + + +V ++ G+ +E Sbjct: 8 LVVDDEDRIRRLLKMYLERENYRIEEASDGDQALSMALNNNYEVILLDLM--MPGKDGIE 65 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARVA 113 + R +R P++ ++ + F+ G DD + KP RE A+ + Sbjct: 66 VCRELREFKSTPVVMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKAVLRRAKQS 125 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + +++ ++ V G+ L +E +L YL + K + + Sbjct: 126 SEESAGGTPGDIITFPHLKIDNEAHRVIVDGKEIGLTPKEYDLLYYLAKSPDKVFDRESL 185 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF--DPVDSKRFLGYSID 221 ++ ++ + +++H+ +LR+KL + + + LGY + Sbjct: 186 LKEVW-RYEFFGDLRTIDTHVKRLREKLHDVSEDAARMIVTVWGLGYKFE 234 >gi|213965034|ref|ZP_03393233.1| transcriptional regulatory protein [Corynebacterium amycolatum SK46] gi|213952570|gb|EEB63953.1| transcriptional regulatory protein [Corynebacterium amycolatum SK46] Length = 231 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 52/229 (22%), Positives = 100/229 (43%), Gaps = 13/229 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + + L +G + + S A D+ ++ L G E Sbjct: 5 LIVEDETALAEPLAFLLQREGFEVRMAADGQEALAEFSKAEPDIVLLDLML--PGMSGTE 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + IR S VP+I ++ + + + G DD V KP RE++AR+ A+ RR + Sbjct: 63 VCKNIRLKSSVPVIMVTARDTEIDKVVGLEIGADDYVTKPYSSRELIARIRAVLRRGRHD 122 Query: 123 NNRAETGPIRV---------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 ++ + V G+ +P +E +LEYL+ NRG+ + + Q+ Sbjct: 123 DSDDVEDLYEEVLRGGPVVLDVERHVVTVDGDDVAMPLKEFDLLEYLLRNRGRVLTRGQL 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 ++G D + ++ HI +LR K+ N + + + R LGY + Sbjct: 183 IDRVWG-SDYVGDTKTLDVHIKRLRSKIERNPSSPEFLVTVRGLGYKFE 230 >gi|326204682|ref|ZP_08194538.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] gi|325985249|gb|EGD46089.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] Length = 238 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 52/232 (22%), Positives = 104/232 (44%), Gaps = 12/232 (5%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + +++D ++ +G + F++ E S D+ ++ L G Sbjct: 5 VIFVVEDEMHIQQLIKYNLEANGFKVNVFDNGEDLLAYSSENIPDLFILDIML--PGIDG 62 Query: 61 LELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 LE+ R ++ +P+I ++ + + G DD + KP RE++ARV A++R Sbjct: 63 LEVCRNLKQTTNTKTIPIIMLTAKSEEFDKVLGLELGADDYITKPFSVRELVARVKALFR 122 Query: 118 RLKVSNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 R+ + G I + + R+ + +P +E +L+ L+ N+GK +++ + Sbjct: 123 RVNTATEPKIDVLSHGEITIDCNRREVYKGSRLLEMPLKEFELLKMLVLNKGKVLSREHL 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI-DWN 223 I+G FD E V+ HI LR+K+ + +++ R +GY D N Sbjct: 183 LDKIWG-FDYYGETRTVDVHIRYLRQKIEDNDENPTYIETVRGIGYRFTDKN 233 >gi|315641357|ref|ZP_07896433.1| DNA-binding response regulator [Enterococcus italicus DSM 15952] gi|315482930|gb|EFU73450.1| DNA-binding response regulator [Enterococcus italicus DSM 15952] Length = 234 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 48/228 (21%), Positives = 92/228 (40%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + E D+ ++ L L Sbjct: 4 ILVVDDEKPISDIVKFNLSKEGYEVFTAYDGEEALEKVREVEPDLILLDLML--PKMDGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R +P+I ++ S + + G DD V KP +RE++ARV A RR Sbjct: 62 EVAREVRKTFDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRGSS 121 Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + AE + D E L RE +L YL + G+ + + + Sbjct: 122 AAKEAEEQTNSELSIGDLTIHPDAYMVTKHNEAIELTHREFELLHYLAKHIGQVMTREHL 181 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++G +D + V+ + +LR+K+ + + + ++R +GY + Sbjct: 182 LQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPNYLATRRGVGYYL 228 >gi|301052937|ref|YP_003791148.1| response regulator [Bacillus anthracis CI] gi|300375106|gb|ADK04010.1| response regulator [Bacillus cereus biovar anthracis str. CI] Length = 223 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 40/222 (18%), Positives = 83/222 (37%), Gaps = 7/222 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + ++ + G + + + D ++ L Sbjct: 7 LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIM--MPEMDGLS 64 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRLK 120 + + IR S VP+I ++ ++ G DD + KP E+ + Sbjct: 65 VCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTKQ 124 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + GPI + R E GE L +E +L +L + G+ ++ Q+ ++G Sbjct: 125 EQQGEIQFGPILINEKSRKIEADGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG- 183 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D A V++H+ +R KL + + +GY + Sbjct: 184 YDYAGSTRTVDTHVKTMRLKLGESGN--YIQTVWGVGYKFEV 223 >gi|242242765|ref|ZP_04797210.1| response regulator [Staphylococcus epidermidis W23144] gi|242233901|gb|EES36213.1| response regulator [Staphylococcus epidermidis W23144] gi|319400835|gb|EFV89054.1| transcriptional regulatory protein resD [Staphylococcus epidermidis FRI909] Length = 241 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 36/232 (15%), Positives = 83/232 (35%), Gaps = 14/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ + + + L ++ L + Sbjct: 5 ILIVDDEDRIRRLLKLYLERESFEIHEARDGKEAYELALENNYACILLDLML--PEMDGI 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112 E+ +R H P+I ++ ++ F+SG DD + KP RE + Sbjct: 63 EVASKLREHKDTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQT 122 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 A + + + E + + +D + L +E +L YL K + Q Sbjct: 123 ANTEQSEPHARDIIEFSHLVIDNDAHRVLADNQQVNLTPKEYELLIYLAKTPNKVFDREQ 182 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSIDW 222 + ++ ++ + V++H+ +LR+KL + + + +GY + Sbjct: 183 LLKEVW-HYEFYGDLRTVDTHVKRLREKLNRVSSDAAQMIQTVWGVGYKFEV 233 >gi|229043138|ref|ZP_04190863.1| Two-component response regulator [Bacillus cereus AH676] gi|229144003|ref|ZP_04272419.1| Two-component response regulator [Bacillus cereus BDRD-ST24] gi|228639400|gb|EEK95814.1| Two-component response regulator [Bacillus cereus BDRD-ST24] gi|228726197|gb|EEL77429.1| Two-component response regulator [Bacillus cereus AH676] Length = 218 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 40/222 (18%), Positives = 83/222 (37%), Gaps = 7/222 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + ++ + G + + + D ++ L Sbjct: 2 LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIM--MPEMDGLS 59 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRLK 120 + + IR S VP+I ++ ++ G DD + KP E+ + Sbjct: 60 VCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYTKQ 119 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + GPI + R E GE L +E +L +L + G+ ++ Q+ ++G Sbjct: 120 EQQEEIQFGPILINEKSRRIEAGGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG- 178 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D A V++H+ +R KL + + +GY + Sbjct: 179 YDYAGSTRTVDTHVKTMRLKLGESGN--YIQTVWGVGYKFEV 218 >gi|209695880|ref|YP_002263810.1| response regulator homolog PhoB (phosphate regulon transcriptional regulatory protein) [Aliivibrio salmonicida LFI1238] gi|208009833|emb|CAQ80141.1| response regulator homolog PhoB (phosphate regulon transcriptional regulatory protein) [Aliivibrio salmonicida LFI1238] Length = 230 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 38/222 (17%), Positives = 94/222 (42%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D A +++ + G + L D+ ++ L G G + Sbjct: 5 ILVVEDEAPIREMLCFVLEQKGYEPIEAEDYDTALALLCEPYPDLILLDWMLPGGSGINL 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ + ++P++ ++ + + + G DD + KP +E++AR+ A+ RR+ Sbjct: 65 IKHLKRDEFTKKIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELMARLKAVIRRVS 124 Query: 121 VSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++ ++ + + E ++L + M ++ + ++ Q+ + ++ Sbjct: 125 PTSVEELIDVQGLKLDPVSHRVTANDKPLDMGPTEFKMLHFFMTHQERVYSREQLLNNVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G + VE+ V+ HI +LRK L + V + R GY Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALEAEGHDRLVQTVRGAGYRF 225 >gi|261212177|ref|ZP_05926463.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio sp. RC341] gi|262402893|ref|ZP_06079454.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio sp. RC586] gi|260838785|gb|EEX65436.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio sp. RC341] gi|262351675|gb|EEZ00808.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio sp. RC586] Length = 229 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 36/222 (16%), Positives = 92/222 (41%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++++D A +++ + G + + D+ ++ L G G + Sbjct: 5 ILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSAMSKLAEPFPDLVLLDWMLPGGSGINL 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ + +P++ ++ + + + G DD + KP +E++AR+ A+ RR+ Sbjct: 65 IKHMKREEVTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIRRVT 124 Query: 121 VSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + ++ + + E ++L + M ++ + ++ Q+ + ++ Sbjct: 125 PTALEDVIDVQGLKLDPVSHRVTANDQPLDMGPTEFKMLHFFMTHQERVYSREQLLNNVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G + VE+ V+ HI +LRK L + + + R GY Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALEDAGHDKLIQTVRGAGYRF 225 >gi|229096500|ref|ZP_04227471.1| DNA-binding response regulator [Bacillus cereus Rock3-29] gi|228686706|gb|EEL40613.1| DNA-binding response regulator [Bacillus cereus Rock3-29] Length = 228 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 37/222 (16%), Positives = 93/222 (41%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ +G + D+ ++ Sbjct: 8 ILIVDDDPHIRELVSVFLEREGFQTYEAIDGIDALRKMDEVKVDMVILDIM--MPNMDGF 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ +R + +P++ ++ + F G DD + KP E++ RV A+ +R ++ Sbjct: 66 DVCFELRKYYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 125 Query: 122 SNNRAETGPIR-VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + +++ + + + + LP +E +L L + G+ ++ Q+ I+G Sbjct: 126 TVSQSIQVGNVLLNRKTFEVTLGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEEIWG- 184 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D E ++ HI++LR+K + + + + R LGY ++ Sbjct: 185 YDFEGNERTLDVHINRLREKFQEEKSKLSIKTIRGLGYRLEV 226 >gi|326791036|ref|YP_004308857.1| transcriptional regulator [Clostridium lentocellum DSM 5427] gi|326541800|gb|ADZ83659.1| two component transcriptional regulator, winged helix family [Clostridium lentocellum DSM 5427] Length = 226 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 41/226 (18%), Positives = 89/226 (39%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + +G + + + S D+ ++ L Sbjct: 4 ILIVDDDTNISELIALYLNKEGYETKEVATGRLALEVFESFYPDLVLLDVML--PELDGY 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + IR + P+I ++ + + + G DD + KP +E++ARV A+ RR Sbjct: 62 DVCKEIRKQHRTPIIMLTAKGEVFDKVLGLELGADDYMVKPFDPKELIARVKAVLRRNTQ 121 Query: 122 SNNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + D +G + LP +E +L +L ++ + + Q+ Sbjct: 122 PIEEVAPKNRIVLDNLIIDKDNYSVTYEGALVELPPKELEVLYFLASHPKQVFTREQLLD 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 I+G +D + V+ HI +LR K + + + +GY + Sbjct: 182 KIWG-YDFVGDTRTVDVHIKRLRDKFEGDHTWS-IKTVWGVGYKFE 225 >gi|229010688|ref|ZP_04167886.1| Two-component response regulator [Bacillus mycoides DSM 2048] gi|229057028|ref|ZP_04196422.1| Two-component response regulator [Bacillus cereus AH603] gi|229132193|ref|ZP_04261050.1| Two-component response regulator [Bacillus cereus BDRD-ST196] gi|229166232|ref|ZP_04293991.1| Two-component response regulator [Bacillus cereus AH621] gi|228617177|gb|EEK74243.1| Two-component response regulator [Bacillus cereus AH621] gi|228651241|gb|EEL07219.1| Two-component response regulator [Bacillus cereus BDRD-ST196] gi|228720305|gb|EEL71881.1| Two-component response regulator [Bacillus cereus AH603] gi|228750582|gb|EEM00410.1| Two-component response regulator [Bacillus mycoides DSM 2048] Length = 218 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 41/222 (18%), Positives = 84/222 (37%), Gaps = 7/222 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + ++ + G + + + D ++ L Sbjct: 2 LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALRKLETDHYDFVVLDIM--MPEMDGLS 59 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRLK 120 + + IR S VP+I ++ ++ G DD + KP E+ + Sbjct: 60 VCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTKQ 119 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + GPI + R E GE PL +E +L +L + G+ ++ Q+ ++G Sbjct: 120 EQQEEIQFGPILINEKSRRVETNGETIPLTVKEFDLLYFLCQHNGQVFSREQLLEKVWG- 178 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D A V++H+ +R KL + + +GY + Sbjct: 179 YDYAGSTRTVDTHVKTMRLKLGESGN--YIQTVWGVGYKFEV 218 >gi|49477181|ref|YP_035526.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49328737|gb|AAT59383.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 223 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 40/222 (18%), Positives = 83/222 (37%), Gaps = 7/222 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + ++ + G + + + D ++ L Sbjct: 7 LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIM--MPEMDGLS 64 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRLK 120 + + IR S VP+I ++ ++ G DD + KP E+ + Sbjct: 65 VCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTKQ 124 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + GPI + R E GE L +E +L +L + G+ ++ Q+ ++G Sbjct: 125 EQQEEVQFGPILINEKSRKIEADGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG- 183 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D A V++H+ +R KL + + +GY + Sbjct: 184 YDYAGSTRTVDTHVKTMRLKLGESGN--YIQTVWGVGYKFEV 223 >gi|228919209|ref|ZP_04082580.1| hypothetical protein bthur0011_2380 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228840451|gb|EEM85721.1| hypothetical protein bthur0011_2380 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 238 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 43/228 (18%), Positives = 89/228 (39%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD +++ + ++ E L + + ++ + Sbjct: 6 ILIADDDKEIRNLLKIYLERELYMVDTAIDGEVALQLFNQNNYSLVILDLM--MPKVDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R + VP++ ++ + G DD + KP E++ARV A+ RR V Sbjct: 64 EVCRKLRDKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKALIRRFFV 123 Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + + E L +E +L++ ++N G+ KTQ+ Sbjct: 124 LGSNISVQEQTTLAFKGLTINLNTYTVHTNKEEISLTGKELELLKFFISNPGQVFTKTQL 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 F ++ + ++N V HI KLRKK+ + + + +GY Sbjct: 184 FRNVWD-DNYIEDDNTVMVHIRKLRKKIEIDPSNPKFIQTVWGIGYKF 230 >gi|166030784|ref|ZP_02233613.1| hypothetical protein DORFOR_00458 [Dorea formicigenerans ATCC 27755] gi|166029366|gb|EDR48123.1| hypothetical protein DORFOR_00458 [Dorea formicigenerans ATCC 27755] Length = 257 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 47/252 (18%), Positives = 91/252 (36%), Gaps = 36/252 (14%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ L G +G + + L D+ ++ + G Sbjct: 6 ILIVDDNPEIREIINVLLGGEGFEVSEAENGAQALTLIEQQDFDLIILDIMMPGP--NGY 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R IR S P++ +S F SG DD + KP + E+++R A+ RR +V Sbjct: 64 QTCRKIRELSNAPILFLSARTKESDKTLGFSSGGDDYLAKPFSYNELISRSKALIRRYQV 123 Query: 122 S---------------------------------NNRAETGPIRVFSDGRDPEVQGEVFP 148 + + + R+ G++ Sbjct: 124 YKGKNESGNQSINSASVNPTAEPIASTSNASDSRHRILLFHDLEINQTVREVHKNGQLLD 183 Query: 149 LPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGF 207 L E +LE L+ANR + + ++F +++ N V HI LR K+ + Sbjct: 184 LTETEYSMLELLVANRHQTFSAQRLFESVWQEPYYYGANNTVTVHIRNLRSKVEDHPGNP 243 Query: 208 DPVDSKRFLGYS 219 + + + GY Sbjct: 244 ELIKTVWGKGYR 255 >gi|330830656|ref|YP_004393608.1| phosphate regulon transcriptional regulatory protein PhoB [Aeromonas veronii B565] gi|328805792|gb|AEB50991.1| Phosphate regulon transcriptional regulatory protein PhoB [Aeromonas veronii B565] Length = 229 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 34/222 (15%), Positives = 91/222 (40%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D A +++ + G ++ ++ + G G + Sbjct: 5 ILVVEDEAPIREMLCFVLEQKGYETIEAEDYADGLAKVREPYPELIVLDWMMPGGSGIQF 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ + Q+P++ ++ + + ++G DD + KP +E+ AR+ A+ RR+ Sbjct: 65 IKQLKQDEVTRQIPVVMLTARGEEEDKVRGLEAGADDYITKPFSPKELTARLHAVMRRVS 124 Query: 121 VSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++ ++ + + + E ++L + M + + ++ Q+ + ++ Sbjct: 125 PTSVDEVIEVQGLKLDPVSHRVSAEEKALDMGPTEFKLLHFFMTHPERVYSREQLLNNVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G + VE+ V+ HI +LRK + + + R GY Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKAIEETGHDRLIQTVRGAGYRF 225 >gi|213964807|ref|ZP_03393006.1| transcriptional regulatory protein [Corynebacterium amycolatum SK46] gi|213952343|gb|EEB63726.1| transcriptional regulatory protein [Corynebacterium amycolatum SK46] Length = 224 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 43/220 (19%), Positives = 88/220 (40%), Gaps = 5/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + +G + D+ ++ L G + Sbjct: 5 ILVVDDDPAIAEMLTMVMEREGFDTVVVDDGLEAVKAAERENPDLILLDLML--PGMSGV 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R +R S VP+I ++ + +SG DD V KP +E++ARV A RR + Sbjct: 63 DVCRTVRETSAVPIIMLTAKTDTVDVVLGLESGADDYVTKPFKPKELVARVRARLRRQED 122 Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 S + + G G+ L E +L L + + ++ ++ ++G Sbjct: 123 SPSETLEVGDLTIDVPGHAVFRDGKEISLTPLEFDLLHALASRPKQVFSRDELLEKVWG- 181 Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219 + + +V H+ +LR K+ + V + R +GY Sbjct: 182 YQHTSDTRLVNVHVQRLRSKIELDPENPQIVLTVRGVGYK 221 >gi|20807496|ref|NP_622667.1| response regulator [Thermoanaerobacter tengcongensis MB4] gi|20516025|gb|AAM24271.1| Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Thermoanaerobacter tengcongensis MB4] Length = 229 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 49/221 (22%), Positives = 97/221 (43%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + F +G ++ D+ ++ L G Sbjct: 5 ILIVEDERQIARFLQLEFEHEGYEVKIVYDGTSGVKEALEGDYDLVLLDIML--PGMDGY 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119 E+ + IR +S +P+I ++ ++ + D G DD V KP E+ ARV A R Sbjct: 63 EVLKKIRENSDIPVIMLTAKYEVKDKVRGLDIGADDYVTKPFSIEELFARVRAALRKRNP 122 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + + I + + QG L ++E +LE+LM N +++ +I +++G Sbjct: 123 SIKKDVLKFAGIVMDLTTHEVRRQGVKIDLTKKEFDLLEFLMRNANIALSREKILRSVWG 182 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D + NVV+ +I LR K+ + + + R +GYS+ Sbjct: 183 -YDYYGDTNVVDVYIRYLRSKIDDPFDRKLIHTIRGVGYSL 222 >gi|300854624|ref|YP_003779608.1| regulatory protein VanR [Clostridium ljungdahlii DSM 13528] gi|300434739|gb|ADK14506.1| regulatory protein VanR [Clostridium ljungdahlii DSM 13528] Length = 232 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 37/229 (16%), Positives = 82/229 (35%), Gaps = 11/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D ++G ++ F + + S + +++ ++ L Sbjct: 5 ILVVDDEQSIADLIEVYLKNEGFTIYKFYNGQDALRCVESEQLELAILDVML--PDIDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH--------REILARVA 113 + + IR P+I ++ + G DD + KP ++ Sbjct: 63 TICQKIREKHNFPVIMLTAKEEEIDKITGLTLGADDYITKPFRPLELVARVKAQLRRFTK 122 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + + + + + L E IL L +NRG+ ++ ++ Sbjct: 123 YNSGEPNQEEQLIAFSGLVLDMNTHECTLNEKKLSLTPTEFSILWVLCSNRGRVISSEEL 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221 F ++G N V HI LR+KL + + + +GY I+ Sbjct: 183 FHEVWGDKYFTNSNNTVMVHIRHLREKLHDSAEHPKYIKTVWGIGYKIE 231 >gi|260436729|ref|ZP_05790699.1| two component transcriptional regulator, winged helix family [Synechococcus sp. WH 8109] gi|260414603|gb|EEX07899.1| two component transcriptional regulator, winged helix family [Synechococcus sp. WH 8109] Length = 242 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 44/228 (19%), Positives = 86/228 (37%), Gaps = 10/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARED-VSAIEAFLIGKGEKV 60 ++++D +++ + +G ++ L ++ D V I L+ G Sbjct: 15 LLVVEDDDSIRETVGEVLRAEGFEVQTCADGASALNLITAETSDPVDLIVLDLMLPGLGG 74 Query: 61 LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPI------HHREILARVA 113 L+L R +R + P++ IS S + + G DD + KP L R + Sbjct: 75 LDLCRELRRINNTTPILVISARDSETDRVLGLEVGADDYLVKPFGLRELVARCRALLRRS 134 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + + +F G L +E +ILE + N + ++ Q+ Sbjct: 135 SQSETSAPQPHSFTHANLCLFPSECRVTRDGMDLTLSPKEYKILELFIQNPKRVWSRDQL 194 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 I+G+ D + V+ HI LR+K+ + + R GY Sbjct: 195 LEKIWGV-DFIGDTKTVDVHIRWLREKVEQEPSSPQLILTVRGFGYRF 241 >gi|163839170|ref|YP_001623575.1| two-component response regulator [Renibacterium salmoninarum ATCC 33209] gi|162952646|gb|ABY22161.1| two-component response regulator [Renibacterium salmoninarum ATCC 33209] Length = 231 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 54/225 (24%), Positives = 97/225 (43%), Gaps = 8/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D D L +G +E ++ D+ ++ L G+ Sbjct: 4 ILIVEDEESFSDPLSYLLAKEGFEVEVVDNGIDAITEFDRVGADLVLLDLQL--PGQSGT 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +RA S P+I ++ S + + G DD V KP RE++ARV A+ RR Sbjct: 62 EVCRQLRARSSAPVIMLTAKDSEIDKVVGLELGADDYVTKPYSSRELVARVRAVLRRQGE 121 Query: 122 SNNRAETGPI----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 T R+ + V GE LP +E +LE L+ N G+ + + Q+ + Sbjct: 122 PEELMTTTVQAGPVRMDIERHVVSVNGEQVSLPLKEFELLEMLLRNSGRVLTRGQLIDRV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 +G D + ++ H+ +LR K+ + + + R LGY + Sbjct: 182 WG-SDYVGDTKTLDVHVKRLRSKIEPDPSSPRYLVTVRGLGYKFE 225 >gi|308177887|ref|YP_003917293.1| DNA-binding response regulator MtrA [Arthrobacter arilaitensis Re117] gi|307745350|emb|CBT76322.1| DNA-binding response regulator MtrA [Arthrobacter arilaitensis Re117] Length = 226 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 43/220 (19%), Positives = 90/220 (40%), Gaps = 5/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + +DG + D+ ++ L G + Sbjct: 5 ILVVDDDEALSEMIGIVLQNDGFDTSFCYEGSGALEAFRESNPDLVLLDLML--PGIDGI 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ ++I A S VP++ ++ + +SG DD V KP E++ARV A R + Sbjct: 63 KVCKLISAESDVPVVMLTAKSDTADVVRGLESGADDYVPKPFKPAELVARVRARLRPNET 122 Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + G + + G +V L E +L + + ++ Q+ A++G Sbjct: 123 HAAETLQVGEVTIDVAGHRVTRGTDVVSLTPLEFDLLVTMARKPWQVFSREQLLEAVWG- 181 Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219 + A + +V H+ +LR K+ + + + R +GY Sbjct: 182 YRHAADTRLVNVHVQRLRSKIEIDPEKPQIIQTVRGVGYK 221 >gi|311743633|ref|ZP_07717439.1| response regulator [Aeromicrobium marinum DSM 15272] gi|311312763|gb|EFQ82674.1| response regulator [Aeromicrobium marinum DSM 15272] Length = 221 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 49/218 (22%), Positives = 94/218 (43%), Gaps = 4/218 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD A + + + +G++ S + S R D+ ++ L G + Sbjct: 2 LVVDDDASLAEMLSIVLEAEGLTAAVCRSGDKVMTAFESFRPDLVLLDLML--PGMDGMS 59 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IRA S VP+I ++ + D+G DD + KP + E++AR+ A RR Sbjct: 60 VCRQIRATSSVPIIMLTAKSDTPDVVAGLDAGADDYLTKPFKNVELVARIKARLRRTDQL 119 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 G I + G +GE L E +L L+A + + + ++G + Sbjct: 120 GEPLVFGDIVLDPVGHTVTRKGEPLELTPLEFDLLACLLATPEQVFTREVLLQKVWG-YH 178 Query: 183 EAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYS 219 + +V H+++LR K+ + + + R +GY Sbjct: 179 HPGDTKLVNVHMTRLRSKIEDDADNPSVIRTVRGVGYQ 216 >gi|282898472|ref|ZP_06306462.1| Two component Transcriptional regulator, Winged helix family [Raphidiopsis brookii D9] gi|281196638|gb|EFA71544.1| Two component Transcriptional regulator, Winged helix family [Raphidiopsis brookii D9] Length = 242 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 47/228 (20%), Positives = 90/228 (39%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++ G + E A D+ ++ Sbjct: 8 ILVVDDEASIRRILETRLSMIGYDVVTAGDGEEALETFRKANPDLVVLDVM--MPKLDGY 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAA 114 + + +R S VP+I ++ + + + G DD V KP +E+ RV Sbjct: 66 GVCQELRKESDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDK 125 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 S+ G I++ ++ R E L E +LE L++ G+ ++++I Sbjct: 126 NGTTGIPSSGVIHVGNIKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEAFSRSEIL 185 Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 ++G + V+ VV+ HIS+LR KL + + + + R GY Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLF 233 >gi|260427208|ref|ZP_05781187.1| phosphate regulon transcriptional regulatory protein PhoB [Citreicella sp. SE45] gi|260421700|gb|EEX14951.1| phosphate regulon transcriptional regulatory protein PhoB [Citreicella sp. SE45] Length = 229 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 55/223 (24%), Positives = 96/223 (43%), Gaps = 8/223 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D A ++ +G + + E + DV ++ L +E Sbjct: 9 LVVEDEAAQREVLRYNLEAEGFRVAAAGNGEEALMMMDEESPDVIVLDWML--PNLSGIE 66 Query: 63 LPRII---RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 + R I VP+I +S + ++G DD V KP RE++ARV A RR Sbjct: 67 VCRQIKTRPETRGVPVIMLSARSEEVDRIRGLETGADDYVVKPYSLRELMARVRAQLRRA 126 Query: 120 KVSNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + R E I + ++ G+ L E R+L M G+ ++ Q+ + Sbjct: 127 RPAAAGLRLEYEDIVLDAETHRVTRDGQELKLGPTEFRLLSTFMEKPGRVWSREQLLDRV 186 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G D V+ V+ HI +LRK L G DP+ + R GY++ Sbjct: 187 WGR-DIYVDTRTVDVHIGRLRKALGVHGGGDPLRTVRGAGYAL 228 >gi|229032514|ref|ZP_04188481.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH1271] gi|228728805|gb|EEL79814.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH1271] Length = 239 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 53/229 (23%), Positives = 84/229 (36%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD A + D +G + E + + D+ ++ Sbjct: 13 ILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIM--MPKMDGY 70 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IRA +P+I +S S + G DD + KP E++ARV A RR Sbjct: 71 EVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 130 Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 N + + R V GE L +E IL L ++ K I Sbjct: 131 LNQPKVAESKSALEVGGVVIDPERRTVNVYGEQVELTPKEFDILYLLASHPKKVYNVENI 190 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221 F ++ N V HI LRKKL +K + + +GY+ + Sbjct: 191 FQHVWADDYFEGG-NTVMVHIRTLRKKLGEDKRKNKLIKTVWGVGYTFN 238 >gi|119486641|ref|ZP_01620691.1| Two component Transcriptional regulator, Winged helix family protein [Lyngbya sp. PCC 8106] gi|119456258|gb|EAW37390.1| Two component Transcriptional regulator, Winged helix family protein [Lyngbya sp. PCC 8106] Length = 243 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 44/228 (19%), Positives = 89/228 (39%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++ G + E D+ ++ Sbjct: 8 ILVVDDEASIRRILETRLSMIGYDVVTAADGEEALETFRKTEPDLVVLDVM--MPKLDGY 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAA 114 + + +R S +P+I ++ + + + G DD V KP +E+ R+ Sbjct: 66 GVCQELRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRIDK 125 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 S+ + IR+ ++ R E L E +LE L++ G+ ++++I Sbjct: 126 NGASGIPSSGVIQVATIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEIL 185 Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220 ++G + V+ VV+ HIS+LR KL + + + + R GY Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEEDPSNPELILTARGTGYLF 233 >gi|110801928|ref|YP_699744.1| DNA-binding response regulator [Clostridium perfringens SM101] gi|110682429|gb|ABG85799.1| DNA-binding response regulator [Clostridium perfringens SM101] Length = 228 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 44/224 (19%), Positives = 93/224 (41%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + G +++ + + + + ++ ++ L G + Sbjct: 8 ILIVDDDENICEVIKMYLETTGYNVKVAHDGKAAKEEFVNFSPNLVVLDMML--PGIDRM 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118 E+ + IR S VP+I ++ + + G DD V KP +E + V Y Sbjct: 66 EVLKWIRKDSNVPVIMLTAKGETFDKVLALEIGADDYVVKPFEPKELLARVKAVMRRYSG 125 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + N + + ++ GE P +E +L YL +N+ K + Q+ ++ Sbjct: 126 EEPDNVVLNFPGLTIDANSYKVIYNGEEVKTPPKEFELLHYLASNKNKVFTRDQLLCEVW 185 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 G +D + V+ HI +LR+KL N +++ +GY + Sbjct: 186 G-YDYPGDSRTVDVHIKRLREKL-NGGEEWQLETVWGVGYKFEV 227 >gi|86606063|ref|YP_474826.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab] gi|86554605|gb|ABC99563.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab] Length = 243 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 47/228 (20%), Positives = 98/228 (42%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++ G + E + D+ ++ Sbjct: 9 ILVVDDEASIRRILETRLSMIGYDVVTAADGEEALEVFRKQDPDLVVLDVM--MPKLDGY 66 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + +R S +P+I ++ + + + G DD V KP +E+ AR+ ++ RR+ Sbjct: 67 GVCQELRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVAR 126 Query: 122 SNNR-------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 S++ + G +R+ ++ R + E L E +LE L++ G+ ++ +I Sbjct: 127 SSHEGIPSSGVIQVGDLRIDTNKRQVYKRDERIRLTGMEFSLLELLVSRSGEPFSRAEIL 186 Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 ++G + V+ VV+ HIS+LR KL + + + + R GY Sbjct: 187 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLF 234 >gi|16801128|ref|NP_471396.1| hypothetical protein lin2062 [Listeria innocua Clip11262] gi|16414563|emb|CAC97292.1| resD [Listeria innocua Clip11262] gi|313623105|gb|EFR93378.1| transcriptional regulatory protein ResD [Listeria innocua FSL J1-023] Length = 238 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 34/231 (14%), Positives = 90/231 (38%), Gaps = 14/231 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD ++ + +E + + + + +V ++ G+ +E Sbjct: 8 LVVDDEDRIRRLLKMYLERENYRIEEASDGDQALNMALNNNYEVILLDLM--MPGKDGIE 65 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARVA 113 + R +R + P++ ++ + F+ G DD + KP RE A+ + Sbjct: 66 VCRELREYKSTPVVMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKAVLRRAKQS 125 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + +++ ++ V G+ L +E +L YL + K + + Sbjct: 126 SEEAAGGTPGDIITFPHLKIDNEAHRVIVDGKEIGLTPKEYDLLYYLAKSPDKVFDRESL 185 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLG--FDPVDSKRFLGYSIDW 222 ++ ++ + +++H+ +LR+KL + + + LGY + Sbjct: 186 LKEVW-RYEFFGDLRTIDTHVKRLREKLHDVSEDAARMIVTVWGLGYKFEV 235 >gi|30264915|ref|NP_847292.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|49187736|ref|YP_030989.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|49481633|ref|YP_038895.1| DNA-binding response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|50196963|ref|YP_052651.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|65322218|ref|ZP_00395177.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bacillus anthracis str. A2012] gi|165869742|ref|ZP_02214400.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167634021|ref|ZP_02392344.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|167638206|ref|ZP_02396484.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170705481|ref|ZP_02895945.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|177651118|ref|ZP_02933949.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190567194|ref|ZP_03020109.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|196033098|ref|ZP_03100511.1| DNA-binding response regulator [Bacillus cereus W] gi|227817646|ref|YP_002817655.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228917502|ref|ZP_04081051.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228929900|ref|ZP_04092915.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228936161|ref|ZP_04098964.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228948597|ref|ZP_04110876.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229124416|ref|ZP_04253604.1| Two component transcriptional regulator, winged helix [Bacillus cereus 95/8201] gi|229601717|ref|YP_002869120.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|254687657|ref|ZP_05151513.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254725221|ref|ZP_05187004.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254736963|ref|ZP_05194669.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254741997|ref|ZP_05199684.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254754404|ref|ZP_05206439.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|254757236|ref|ZP_05209263.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|301056364|ref|YP_003794575.1| DNA-binding response regulator [Bacillus anthracis CI] gi|30259590|gb|AAP28778.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|49181663|gb|AAT57039.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|49333189|gb|AAT63835.1| DNA-binding response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|50083025|gb|AAT70159.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|164714571|gb|EDR20090.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167514023|gb|EDR89391.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|167530822|gb|EDR93524.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170129606|gb|EDS98469.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|172082944|gb|EDT68006.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190561698|gb|EDV15668.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|195994527|gb|EDX58482.1| DNA-binding response regulator [Bacillus cereus W] gi|227007073|gb|ACP16816.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228659068|gb|EEL14720.1| Two component transcriptional regulator, winged helix [Bacillus cereus 95/8201] gi|228811096|gb|EEM57438.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228823506|gb|EEM69335.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228829816|gb|EEM75438.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228842174|gb|EEM87273.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229266125|gb|ACQ47762.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|300378533|gb|ADK07437.1| DNA-binding response regulator [Bacillus cereus biovar anthracis str. CI] Length = 232 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 53/229 (23%), Positives = 84/229 (36%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD A + D +G + E + + D+ ++ Sbjct: 6 ILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIM--MPKMDGY 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IRA +P+I +S S + G DD + KP E++ARV A RR Sbjct: 64 EVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 123 Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 N + + R V GE L +E IL L ++ K I Sbjct: 124 LNQPKVAENKSALQVGGVTIDPERRTVNVYGEQIELTPKEFDILYLLASHPKKVYNVENI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221 F ++ N V HI LRKKL +K + + +GY+ + Sbjct: 184 FQQVWADDYYEGG-NTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTFN 231 >gi|170016543|ref|YP_001727462.1| response regulator [Leuconostoc citreum KM20] gi|169803400|gb|ACA82018.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Leuconostoc citreum KM20] Length = 235 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 47/230 (20%), Positives = 97/230 (42%), Gaps = 14/230 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + + L + + D+ ++ L + Sbjct: 4 ILVVDDEKPISDIIKFNLTKEGYDVITAADGQEALALFNDEKPDLVLLDQML--PEIDGV 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR+ S+ P+I ++ S + + G DD V KP +RE++ARV A R K Sbjct: 62 EVLRQIRSKSETPVIMVTAKDSEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRSRKA 121 Query: 122 SNNRAETGPIRV----------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + +E + G+ L RE +L YL + G+ + + Sbjct: 122 VSQHSEEATVHNEDIALGDLTIHPQAYMVSKAGQDIELTHREFELLYYLAQHIGQVMTRE 181 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + ++G +D + V+ + +LR+K+ + + + ++R +GY + Sbjct: 182 HLLQQVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPNWLATRRGVGYYL 230 >gi|75908165|ref|YP_322461.1| two component transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75701890|gb|ABA21566.1| two component transcriptional regulator, winged helix family [Anabaena variabilis ATCC 29413] Length = 238 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 36/232 (15%), Positives = 83/232 (35%), Gaps = 15/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + +G S + D+ ++ + G L Sbjct: 3 ILIVEDESEIAQLIQHSLEKEGFSCRTSRDGINALRMFQEQPPDLIILDLMI--PGLDGL 60 Query: 62 ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILA 110 E+ IR ++ ++ + +G DD + KP RE + Sbjct: 61 EVCARIRQKPGAKDPYILMLTAKGEEIDRVIGLSTGADDYMVKPFSPRELVARVRALLRR 120 Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + + + + + Q E L E +L ++N G+ + Sbjct: 121 SLRQGGQNQVSRTQHFIVDVDQRTASRQIDAHQAEALDLTTLEFNLLSTFVSNPGRVWNR 180 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 TQ+ ++G + +E VV++H+++LRKK+ + + + +GY + Sbjct: 181 TQLIDKLWG-DNFFGDERVVDTHVARLRKKIEPDPTNPSFIKTVVGVGYKFE 231 >gi|291522156|emb|CBK80449.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Coprococcus catus GD/7] Length = 226 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 44/224 (19%), Positives = 99/224 (44%), Gaps = 6/224 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + ++ G ++ E + D++ I ++ Sbjct: 6 ILVVDDESRMRKLVRDFLTKKGFTVIEAGDGEEAVDKFFEVK-DIALIILDVMMPKMDGW 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119 ++ R IR +S+VP+I ++ + L FD GVD+ + KP + + + Sbjct: 65 QVCREIRQYSKVPIIMLTAKSDEKDELQGFDLGVDEYITKPFSPKILVARVEAILRRSNV 124 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +++ E G I + + + G+ L +E +L Y M+N+G +++ +I + ++ Sbjct: 125 LAADDTMEAGGIELNKAAHEVLIDGKSVELSYKEFELLAYFMSNQGVALSRERILNNVW- 183 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 +D + +++H+ KLR KL K + + + +GY + N Sbjct: 184 NYDYFGDARTIDTHVKKLRSKLGAKG--EYIKTIWGMGYKFEVN 225 >gi|146297039|ref|YP_001180810.1| two component transcriptional regulator [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410615|gb|ABP67619.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 232 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 42/227 (18%), Positives = 92/227 (40%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + +G + + + + + D+ ++ + Sbjct: 4 ILIVDDEPHIVELIKFNLQKEGYNTFEAENGNTALDIIKNNKIDLVILDIM--MSDKDGY 61 Query: 62 ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR----VAA 114 E+ + IR + +P+I +S + + G DD + KP +E++AR Sbjct: 62 EVLKEIRFNKGTRNLPVILLSAKSEEIDRILGLELGADDYITKPFSVKELVARVKALFRR 121 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 I + G I V R + + + L +E +L+ L+ NRG+ + + I Sbjct: 122 IENLKPEVEEKIRFGDIEVDFTKRSVKKRNQEISLSFKEFELLKLLIENRGRVLDRDFIL 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220 ++G ++ + V+ HI LR+KL + +++ R +GY Sbjct: 182 QRVWG-YEFDGDSRTVDVHIRFLRRKLEDDEKNPKYIETVRGVGYRF 227 >gi|304317076|ref|YP_003852221.1| transcriptional regulator [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778578|gb|ADL69137.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 228 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 45/225 (20%), Positives = 94/225 (41%), Gaps = 6/225 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + +G ++ S D+ ++ L G Sbjct: 5 ILIIEDEKKIARFLQIELEHEGYNVAIEYSGNEGLRRALDENYDLIILDLML--PGMDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120 + + IR S +P+I +S ++ + D G DD + KP E++AR+ + +K Sbjct: 63 SVLKEIRKKSSIPVIILSAKDEIKDKVMGLDIGADDYLTKPFSIEELMARIRNALRKNIK 122 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + I + + G+ L ++E +L+YL+ N + + I ++G Sbjct: 123 ANTKKISYDGITMDLSTYEVLRDGQKIELTKKEFDLLKYLIINAEIVLTRENILENVWG- 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI--DWN 223 ++ E N+V+ +I LR K+ + + R +GYS+ + N Sbjct: 182 YNYIGETNIVDVYIRYLRSKIDEPFSNKLIQTIRGVGYSLRKEKN 226 >gi|254388535|ref|ZP_05003769.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|197702256|gb|EDY48068.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 223 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 52/224 (23%), Positives = 95/224 (42%), Gaps = 8/224 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D D + +G + + D+ ++ L G E Sbjct: 2 LVVEDEESFSDALSYMLRKEGFEVAVAATGPEGLDEFERNGADLVLLDLML--PGLPGTE 59 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +R S VP+I ++ S + + G DD V KP RE++AR+ A+ RR Sbjct: 60 VCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGEP 119 Query: 123 NNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 GP+R+ D V G LP +E +LE L+ N G+ + + Q+ ++ Sbjct: 120 EEVTPAALEAGPVRMDVDRHVVTVSGAKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRVW 179 Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 G D + ++ H+ +LR K+ + + + R LGY + Sbjct: 180 GA-DYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFE 222 >gi|229017295|ref|ZP_04174199.1| DNA-binding response regulator [Bacillus cereus AH1273] gi|229023471|ref|ZP_04179968.1| DNA-binding response regulator [Bacillus cereus AH1272] gi|228737824|gb|EEL88323.1| DNA-binding response regulator [Bacillus cereus AH1272] gi|228743996|gb|EEL94094.1| DNA-binding response regulator [Bacillus cereus AH1273] Length = 225 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 38/222 (17%), Positives = 95/222 (42%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ +G + D++ ++ Sbjct: 5 ILIVDDDPHIRELVSVFLEKEGFQTYEAVDGLDALRRIEEVKVDMAILDIM--MPNMDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 +L +R + +P++ ++ + F G DD + KP E++ RV A+ +R ++ Sbjct: 63 DLCYELRKYYDMPILMLTAKGETSQKIKGFHLGTDDYLVKPFDPLELVVRVKALLKRYQI 122 Query: 122 SNNRAETGPIR-VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + +++ + + + + LP +E +L L + G+ ++ Q+ ++G Sbjct: 123 TVSQSIQVGNVLLNRNTFEVNAGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG- 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D E ++ HI++LR+K + +L + + R LGY ++ Sbjct: 182 YDFEGNERTLDVHINRLREKFQEELSKFSIRTIRGLGYRLEV 223 >gi|229127391|ref|ZP_04256386.1| DNA-binding response regulator [Bacillus cereus BDRD-Cer4] gi|229144600|ref|ZP_04273002.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24] gi|229150217|ref|ZP_04278439.1| DNA-binding response regulator [Bacillus cereus m1550] gi|296502577|ref|YP_003664277.1| two-component response regulator [Bacillus thuringiensis BMB171] gi|228633336|gb|EEK89943.1| DNA-binding response regulator [Bacillus cereus m1550] gi|228638840|gb|EEK95268.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24] gi|228656073|gb|EEL11916.1| DNA-binding response regulator [Bacillus cereus BDRD-Cer4] gi|296323629|gb|ADH06557.1| two-component response regulator [Bacillus thuringiensis BMB171] Length = 228 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 38/222 (17%), Positives = 92/222 (41%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ +G + D+ ++ Sbjct: 8 ILIVDDDPHIRELVSVFLEREGFQTYEAIDGVDALQKMDDVKVDMVILDIM--MPNMDGF 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ +R + +P++ ++ + F G DD + KP E++ RV A+ +R ++ Sbjct: 66 DVCFELRKYYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 125 Query: 122 SNNRAETGPIR-VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + +++ + + + LP +E +L L A G+ ++ Q+ I+G Sbjct: 126 TVSQSIQVGNVLLNRKTFEVTSGEQTVTLPLKEFELLFTLGAKSGRTCSREQLIEEIWG- 184 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D E ++ HI++LR+K + + + + R LGY ++ Sbjct: 185 YDFEGNERTLDVHINRLREKFQEEQSKFSIKTIRGLGYRLEV 226 >gi|294814051|ref|ZP_06772694.1| PhoP regulatory protein [Streptomyces clavuligerus ATCC 27064] gi|326442455|ref|ZP_08217189.1| putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294326650|gb|EFG08293.1| PhoP regulatory protein [Streptomyces clavuligerus ATCC 27064] Length = 226 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 52/224 (23%), Positives = 95/224 (42%), Gaps = 8/224 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D D + +G + + D+ ++ L G E Sbjct: 5 LVVEDEESFSDALSYMLRKEGFEVAVAATGPEGLDEFERNGADLVLLDLML--PGLPGTE 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +R S VP+I ++ S + + G DD V KP RE++AR+ A+ RR Sbjct: 63 VCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGEP 122 Query: 123 NNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 GP+R+ D V G LP +E +LE L+ N G+ + + Q+ ++ Sbjct: 123 EEVTPAALEAGPVRMDVDRHVVTVSGAKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRVW 182 Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 G D + ++ H+ +LR K+ + + + R LGY + Sbjct: 183 GA-DYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFE 225 >gi|52144036|ref|YP_082792.1| response regulator [Bacillus cereus E33L] gi|118476873|ref|YP_894024.1| response regulator [Bacillus thuringiensis str. Al Hakam] gi|196035354|ref|ZP_03102759.1| DNA-binding response regulator [Bacillus cereus W] gi|196040638|ref|ZP_03107937.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|196046479|ref|ZP_03113704.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|218902506|ref|YP_002450340.1| DNA-binding response regulator [Bacillus cereus AH820] gi|225863261|ref|YP_002748639.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|254726203|ref|ZP_05187985.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|51977505|gb|AAU19055.1| response regulator [Bacillus cereus E33L] gi|118416098|gb|ABK84517.1| response regulator [Bacillus thuringiensis str. Al Hakam] gi|195992031|gb|EDX55994.1| DNA-binding response regulator [Bacillus cereus W] gi|196022663|gb|EDX61345.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|196028428|gb|EDX67036.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|218538516|gb|ACK90914.1| DNA-binding response regulator [Bacillus cereus AH820] gi|225785753|gb|ACO25970.1| DNA-binding response regulator [Bacillus cereus 03BB102] Length = 223 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 40/222 (18%), Positives = 83/222 (37%), Gaps = 7/222 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + ++ + G + + + D ++ L Sbjct: 7 LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIM--MPEMDGLS 64 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRLK 120 + + IR S VP+I ++ ++ G DD + KP E+ + Sbjct: 65 VCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTKQ 124 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + GPI + R E GE L +E +L +L + G+ ++ Q+ ++G Sbjct: 125 EQQEEIQFGPILINEKSRKIEADGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG- 183 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D A V++H+ +R KL + + +GY + Sbjct: 184 YDYAGSTRTVDTHVKTMRLKLGESGN--YIQTVWGVGYKFEV 223 >gi|331092296|ref|ZP_08341124.1| hypothetical protein HMPREF9477_01767 [Lachnospiraceae bacterium 2_1_46FAA] gi|330401728|gb|EGG81307.1| hypothetical protein HMPREF9477_01767 [Lachnospiraceae bacterium 2_1_46FAA] Length = 233 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 45/230 (19%), Positives = 92/230 (40%), Gaps = 13/230 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + + E S + ++ ++ L G Sbjct: 7 ILIVDDDENIAELISLYLTKECFDTMMVHDGEEALTTFDSYQPNLILLDLML--PGIDGY 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R IRA S P+I +S + + + G DD + KP +E++ARV A+ RR + Sbjct: 65 QVCREIRAKSNTPIIMLSAKGEIFDKVLGLELGADDYMIKPFDAKELVARVKAVLRRYQP 124 Query: 122 SNN---------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + I + V +P +E +L +L A+ + + Q Sbjct: 125 AKQEIPVADKGKCVVYPGIEINLTNYSVTVDDLPVEMPPKELELLYFLAASPNQVFTREQ 184 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + I+G +D + V+ HI +LR K+++ + + +GY + Sbjct: 185 LLDQIWG-YDYMGDTRTVDVHIKRLRAKIKDHPTWSL-GTVWGIGYKFEV 232 >gi|319650220|ref|ZP_08004366.1| hypothetical protein HMPREF1013_00971 [Bacillus sp. 2_A_57_CT2] gi|317398051|gb|EFV78743.1| hypothetical protein HMPREF1013_00971 [Bacillus sp. 2_A_57_CT2] Length = 233 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 46/228 (20%), Positives = 90/228 (39%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D V F +G + + + R D+ ++ L + Sbjct: 3 ILVVEDNESVCSMLEMFFMKEGYHGVFVHDGQQGFEHFNKERWDLLIVDWMLPI--MDGV 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 L R IR S+VP+I ++ S + + G DD V KP ++AR+ A+ RR + Sbjct: 61 TLCRKIRELSKVPIIMLTAKDSESDQVLGLEMGADDYVTKPFSPLTLMARIKAVTRRFQA 120 Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + A + L +E +L YL+ + + + Q+ Sbjct: 121 ETGSADEPHYVASEYFKISKESREAYYNGQLLKNLTPKEFDLLYYLVKHPKQVFTREQLL 180 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +++G + +E V+ HI +LRKK+ + + + +GY D Sbjct: 181 DSVWG-YQFYGDERTVDVHIKRLRKKIGTE-EQPFIHTVWGVGYKFDE 226 >gi|296501980|ref|YP_003663680.1| two-component response regulator [Bacillus thuringiensis BMB171] gi|296323032|gb|ADH05960.1| two-component response regulator [Bacillus thuringiensis BMB171] Length = 223 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 40/222 (18%), Positives = 83/222 (37%), Gaps = 7/222 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + ++ + G + + + D ++ L Sbjct: 7 LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIM--MPEMDGLS 64 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRLK 120 + + IR S VP+I ++ ++ G DD + KP E+ + Sbjct: 65 VCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYTKQ 124 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + GPI + R E GE L +E +L +L + G+ ++ Q+ ++G Sbjct: 125 EQQEEIQFGPILINEKSRRIEAGGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG- 183 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D A V++H+ +R KL + + +GY + Sbjct: 184 YDYAGSTRTVDTHVKTMRLKLGESGN--YIQTVWGVGYKFEV 223 >gi|283795144|ref|ZP_06344297.1| DNA-binding response regulator VanRB [Clostridium sp. M62/1] gi|291076787|gb|EFE14151.1| DNA-binding response regulator VanRB [Clostridium sp. M62/1] Length = 224 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 53/226 (23%), Positives = 101/226 (44%), Gaps = 11/226 (4%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 M ++I+D +++ A D G ++ + + D+ ++ L Sbjct: 4 MILIIEDEESIQNIIKAFLEDAGYTVVLAADGLEGIEQFRANKPDLVLLDLML--PKIDG 61 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + I+R S+VP+I ++ + + FD+ DD + KP ++ + A+ RR + Sbjct: 62 FAVCEILRKESRVPIIMLTALDDEDSQMKGFDALADDYITKPFSMPVVMKHIEAVLRRAE 121 Query: 121 V----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 N I V +D V L RE IL+ L+ N+G+ V++ ++ Sbjct: 122 QGGAAPNTVIRYKEITVDTDSLTVLVGTGSVSLTTREFEILKLLLENQGRVVSRERLLDT 181 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 ++G +D +E +V +HI +RKKL G D +++ R GY I+ Sbjct: 182 VWG-YDYIGDEKIVNTHIKNIRKKL----GVDYIETMRGAGYKIEK 222 >gi|87301814|ref|ZP_01084648.1| two-component response regulator [Synechococcus sp. WH 5701] gi|87283382|gb|EAQ75337.1| two-component response regulator [Synechococcus sp. WH 5701] Length = 248 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 44/228 (19%), Positives = 91/228 (39%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++ G + + + D+ ++ Sbjct: 11 ILVVDDEASIRRILDTRLSMIGYQVVTASDGVEALEAFRQSSPDLVVLDVM--MPKLDGY 68 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + +R S VP++ ++ + + + G DD V KP +E+ AR+ + RR++ Sbjct: 69 GVCQELRKESDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRVEK 128 Query: 122 SNNRAETGPI-------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 R+ ++ R E L E +LE L++ G+ ++ +I Sbjct: 129 DPVVGIPNSGVIQVGELRIDTNKRQVYRGEERIRLTGMEFSLLELLVSRSGEPFSRGEIL 188 Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 ++G + V+ VV+ HIS+LR KL + + + + R GY Sbjct: 189 KEVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGYLF 236 >gi|317126039|ref|YP_004100151.1| transcriptional regulator [Intrasporangium calvum DSM 43043] gi|315590127|gb|ADU49424.1| two component transcriptional regulator, winged helix family [Intrasporangium calvum DSM 43043] Length = 227 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 47/225 (20%), Positives = 91/225 (40%), Gaps = 8/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D D L +G + + D+ ++ L G + Sbjct: 4 ILIVEDEVSFSDPLSYLLRKEGYDVAVAETGPDGLAEFDKNGADLVLLDLML--PGLSGI 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117 ++ R +R S VP+I ++ S + + G DD V KP R + A + + Sbjct: 62 DVCRALRQRSSVPVIMLTAKDSEIDKVVGLEIGADDYVTKPYSSRELLARVKAVLRRLAE 121 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + E GP+R+ + V G LP +E +LE L+ N G+ + + Q+ + Sbjct: 122 PEDLLPPTIEAGPVRMDVERHTVTVNGAPTSLPLKEFELLEMLLRNSGRVLTRMQLIDRV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221 +G D + ++ H+ +LR K+ + + R LGY + Sbjct: 182 WG-SDYVGDTKTLDVHVKRLRAKVEPDPARPVHIVTVRGLGYKFE 225 >gi|229160351|ref|ZP_04288349.1| Two-component response regulator [Bacillus cereus R309803] gi|228623075|gb|EEK79903.1| Two-component response regulator [Bacillus cereus R309803] Length = 218 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 41/222 (18%), Positives = 83/222 (37%), Gaps = 7/222 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + ++ + G + + S D ++ L Sbjct: 2 LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALTKLESDHYDFVVLDIM--MPEMDGLS 59 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRLK 120 + + IR S VP+I ++ ++ G DD + KP E+ + Sbjct: 60 VCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTKQ 119 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + GPI + R E GE L +E +L +L + G+ ++ Q+ ++G Sbjct: 120 EQQEEIQFGPILINEKSRRIEANGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG- 178 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D A V++H+ +R KL + + +GY + Sbjct: 179 YDYAGSTRTVDTHVKTMRLKLGESGN--YIQTVWGVGYKFEV 218 >gi|222095607|ref|YP_002529664.1| response regulator [Bacillus cereus Q1] gi|221239665|gb|ACM12375.1| response regulator [Bacillus cereus Q1] Length = 234 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 36/222 (16%), Positives = 93/222 (41%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ +G + D+ ++ Sbjct: 14 ILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKIDEVKVDMVILDIM--MPNMDGF 71 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ +R + +P++ ++ + F G DD + KP E++ RV A+ +R ++ Sbjct: 72 DVCFELRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 131 Query: 122 SNNRAETGPIR-VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + +++ + + + + LP +E +L L + G+ ++ Q+ ++G Sbjct: 132 TVSQSIQVGNVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKTGRTCSREQLIEDVWG- 190 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D E ++ HI++LR+K + + + + R LGY ++ Sbjct: 191 YDFEGNERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLEV 232 >gi|159898879|ref|YP_001545126.1| two component transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159891918|gb|ABX04998.1| two component transcriptional regulator, winged helix family [Herpetosiphon aurantiacus ATCC 23779] Length = 231 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 41/223 (18%), Positives = 88/223 (39%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD A +++ + ++G ++ + ++ + D+ ++ + G L Sbjct: 5 ILVIDDEAKLRELLRSYLQNEGFNVFEAKNGREGLYVARDVKPDLILLDIMMPELG--GL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 + R ++ P+I ++ + + G DD + KP + RE++ARV + Sbjct: 63 DFMRAWNKEAETPIILLTAKIEDHDKIIGLELGADDYITKPFNAREVMARVRAVLRRSYK 122 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + G I + V + L E IL LMA+ G ++ + Sbjct: 123 AQPQADVLRIGEIVLERSACTLMVGEQTVDLTPSEFEILATLMASPGHVFSRLDLLDRTS 182 Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 G E ++ HI LR K+ + +++ +GY Sbjct: 183 GQA-YEGYERTIDVHIRNLRSKIEPDPKNPRYIETVYGVGYRF 224 >gi|312793664|ref|YP_004026587.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180804|gb|ADQ40974.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor kristjanssonii 177R1B] Length = 232 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 40/229 (17%), Positives = 93/229 (40%), Gaps = 11/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + +G + +S + + D+ ++ + Sbjct: 4 ILIVDDEQHILELLKFNLRKEGYNTFEADSGVLALEILKHNKVDLVILDIM--MSDKDGY 61 Query: 62 ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AA 114 E+ + IR + P+I +S + + G DD + KP +E++ RV Sbjct: 62 EVLKEIRFNRDTKNLPVILLSAKSEEIDKILGLELGADDYITKPFSVKELVVRVKALLRR 121 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + ++ + G + V R + + L +E +L+ L+ N+G+ + + I Sbjct: 122 VESLKPEVEDKVKFGDVEVDFSKRTVKKNNQDVSLSFKEFELLKLLIENKGRVLDRDFIL 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222 ++G ++ + V+ HI LR+KL + +++ R +GY + Sbjct: 182 QRVWG-YEFDGDTRTVDVHIRFLRRKLEDDEKNPRYIETVRGVGYRFNE 229 >gi|298491554|ref|YP_003721731.1| winged helix family two component transcriptional regulator ['Nostoc azollae' 0708] gi|298233472|gb|ADI64608.1| two component transcriptional regulator, winged helix family ['Nostoc azollae' 0708] Length = 250 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 40/232 (17%), Positives = 86/232 (37%), Gaps = 16/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQS-------SAREDVSAIEAFLI 54 ++++D L+++ + +G + + D+ ++ L Sbjct: 21 ILVVEDEELIREMLVLALEGEGYEIITAADGRAAVEFLKSCESNSGESPFDLVVLDLML- 79 Query: 55 GKGEKVLELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EIL 109 L++ R++ + VP++ +S S + + G DD + KP R Sbjct: 80 -PQINGLDICRLLRHQGNAVPILMLSAKGSETDRVLGLEVGADDYLTKPFSMRELVARCR 138 Query: 110 ARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 A + + I + V+G+ L +E R+LE M+ + + Sbjct: 139 ALLRRQRLSNLPLIPVLKYKEISLNPQECRVLVRGKEVNLSPKEFRLLELFMSYARRVWS 198 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + Q+ ++G D + V+ HI LR+KL + + + + R GY Sbjct: 199 REQLLDQVWG-PDFVGDSKTVDVHIRWLREKLEQDPSHPEYIVTVRGFGYRF 249 >gi|30020095|ref|NP_831726.1| two-component response regulator [Bacillus cereus ATCC 14579] gi|218235313|ref|YP_002366679.1| DNA-binding response regulator [Bacillus cereus B4264] gi|29895645|gb|AAP08927.1| Two-component response regulator [Bacillus cereus ATCC 14579] gi|218163270|gb|ACK63262.1| DNA-binding response regulator [Bacillus cereus B4264] Length = 225 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 38/222 (17%), Positives = 92/222 (41%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ +G + D+ ++ Sbjct: 5 ILIVDDDPHIRELVSVFLEREGFQTYEAIDGVDALQKMDDVKVDMVILDIM--MPNMDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ +R + +P++ ++ + F G DD + KP E++ RV A+ +R ++ Sbjct: 63 DVCFELRKYYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 122 Query: 122 SNNRAETGPIR-VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + +++ + + + LP +E +L L A G+ ++ Q+ I+G Sbjct: 123 TVSQSIQVGNVLLNRKTFEVTSGEQTVTLPLKEFELLFTLGAKSGRTCSREQLIEEIWG- 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D E ++ HI++LR+K + + + + R LGY ++ Sbjct: 182 YDFEGNERTLDVHINRLREKFQEEQSKFSIKTIRGLGYRLEV 223 >gi|219667787|ref|YP_002458222.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219538047|gb|ACL19786.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 225 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 44/223 (19%), Positives = 93/223 (41%), Gaps = 5/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ L +DG + S A ++ I+ Sbjct: 4 IMIVDDDPTIRELVCTLLKNDGFATCEARDGREALEKISEANPSLAVIDLM--MPNMDGY 61 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL R +R + +P++ ++ + F++G DD + KP E+L RV A+ RR + Sbjct: 62 ELCRQLRQGYKDLPVLMLTAKHEKPAKVKGFEAGTDDYLTKPFDGDELLLRVKALMRRYR 121 Query: 121 VSNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + ++ + + G +P +E +L L G+ + Q+ ++G Sbjct: 122 IEASQTIQIGYVTLDKNSYSVILNGVGEDIPMKEFELLFKLGGFPGRTFTRDQLLEGVWG 181 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D E ++ HI +LR++ + + + R LGY ++ Sbjct: 182 -YDFDGNERTLDVHIGRLRERFPAEKSGFKITTVRGLGYRLEV 223 >gi|253581579|ref|ZP_04858804.1| two component transcriptional regulator [Fusobacterium varium ATCC 27725] gi|251836649|gb|EES65184.1| two component transcriptional regulator [Fusobacterium varium ATCC 27725] Length = 220 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 43/221 (19%), Positives = 100/221 (45%), Gaps = 8/221 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D +++ +G + E L D+ ++ L + Sbjct: 4 ILIVEDEMEIRNILKLYLLKEGYDVTEAEDGEVAIKLFYEKPFDLVILDIML--PKKDGW 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R I+ +S VP++ +S + L F+ G D+ + KP +++ +LAR+ + + Sbjct: 62 SVLREIKKYSSVPVMILSARDDDEDELFGFEIGTDEYITKPFNNKILLARIKTLIKNTSN 121 Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + G I + V+G+ L +E +L YL+ N +++ ++ + ++G Sbjct: 122 NTDHIIELGKITINDTSHTVTVEGKEVILAPKEYELLIYLIKNHKIALSRDKMLTEVWG- 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +D + +++HI LRKKL + + + + R +GY + Sbjct: 181 YDFPGSDRTIDTHIKNLRKKLGD----ECIKTVRGIGYKFE 217 >gi|291298248|ref|YP_003509526.1| winged helix family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290567468|gb|ADD40433.1| two component transcriptional regulator, winged helix family [Stackebrandtia nassauensis DSM 44728] Length = 233 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 41/227 (18%), Positives = 91/227 (40%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D V D +G + S R D+ ++ L + Sbjct: 8 ILVVEDDPNVSDVVRRYLEREGYRVTLAADGLSGLAEYRSGRPDLVVLDLML--PKLPGI 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115 E+ R +R S+VP+I ++ + G DD ++KP RE+ + R A Sbjct: 66 EVCRALRIESEVPVIMLTALGDESDRIAGLSVGADDYLSKPFSPRELVLRVAAVLRRAVR 125 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + G + + R ++G L RE +LE+L+ + G+ ++ ++ Sbjct: 126 TEAAERPGEQLTDGELILDPGSRVATLRGTKLNLTVREFDLLEFLLRHPGQVFSRAELLE 185 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221 ++ +++ V H+ +LR+K+ + + + +GY + Sbjct: 186 RVWDWT--FGDQSTVTVHVRRLREKIEDAPAQPKRLVTVWGVGYRFE 230 >gi|323706070|ref|ZP_08117639.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium xylanolyticum LX-11] gi|323534514|gb|EGB24296.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium xylanolyticum LX-11] Length = 228 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 48/225 (21%), Positives = 93/225 (41%), Gaps = 6/225 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + +G S+ S D+ ++ L G Sbjct: 5 ILIIEDEKRIARFLQIELEREGYSVTLEYSGNSGLREALDGNYDLIILDLML--PGLDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R +R S P+I +S ++ + D G DD + KP E++AR+ + R+ Sbjct: 63 SVLRELRKKSSTPVIILSAKDEVKDKVFGLDIGADDYLTKPFSIEELMARIRNVLRKNAK 122 Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 SN I + + + G L ++E +L+YL+ N + + I ++G Sbjct: 123 SNANKLVYDGITMDLSTYEVKRDGIKIELTKKEFELLKYLIINSEIVLTRENILENVWG- 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI--DWN 223 ++ E N+V+ +I LR K+ + + R +GYS+ + N Sbjct: 182 YNYIGETNIVDVYIRYLRSKIDEPFDNKLIQTIRGVGYSLRKEKN 226 >gi|320332849|ref|YP_004169560.1| winged helix family two component transcriptional regulator [Deinococcus maricopensis DSM 21211] gi|319754138|gb|ADV65895.1| two component transcriptional regulator, winged helix family [Deinococcus maricopensis DSM 21211] Length = 227 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 34/223 (15%), Positives = 84/223 (37%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A +++ + G + ++ D+ ++ G L Sbjct: 4 ILVVEDNAGIREMVREYLAEHGYRVRVASNGVEGLLETRHHPPDLILLDVM--MPGMDGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119 E R RA + P++ ++ + + + G DD + KP E+ R Sbjct: 62 EFLRKYRADAGTPVMFLTARDAELDKVLGLELGADDYLTKPFSMAELLARIRALLRRAGE 121 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 K + G + + + R V+G+ L R E +++ M + + + ++ + Sbjct: 122 KPTGGPVRVGVLELDAASRTFVVRGQRVDLTRSEFELMDLFMRHPQRVFTRVELLEHL-- 179 Query: 180 LFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221 D E ++ H+ +R K+ +++ +GY ++ Sbjct: 180 QEDSVGSERTMDVHVRNIRAKIEEEPGKPRLIETVFGVGYRLN 222 >gi|318041739|ref|ZP_07973695.1| two component transcriptional regulator [Synechococcus sp. CB0101] Length = 234 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 44/224 (19%), Positives = 89/224 (39%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D +++ +G ++ + L S D+ ++ L G L Sbjct: 13 LLVVEDDDTIRETVAEALEMEGFAVTAATNGRSAWDLLSRDSYDLVVLDLML--PGINGL 70 Query: 62 ELPRIIRAHSQVPLI-GISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYR 117 +L R +R S PLI +S + + + G DD + KP RE + R Sbjct: 71 DLCRQLRQGSTPPLILVVSARDTETDRVLGLEVGADDYLIKPFGMRELVARCRALLRRQR 130 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + E ++++ G L +E ++LE M N + ++ Q+ + Sbjct: 131 TPLPTTSSLEHLDLQLYPGECRVTRAGIEIRLSPKEYKLLELFMQNPRRVWSREQLIEQV 190 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 +G+ D + V+ HI LR+K+ + + + R GY Sbjct: 191 WGV-DYIGDSKTVDVHIRWLREKIEDDPSTPAKLVTVRGFGYRF 233 >gi|238763581|ref|ZP_04624542.1| Transcriptional regulatory protein baeR [Yersinia kristensenii ATCC 33638] gi|238698213|gb|EEP90969.1| Transcriptional regulatory protein baeR [Yersinia kristensenii ATCC 33638] Length = 239 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 46/221 (20%), Positives = 87/221 (39%), Gaps = 5/221 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + + G S + + A + ++ L G + Sbjct: 15 LIVEDEPKLGQLLVDYLQAAGYSTQWLTNGAEVVAAVRQAPPAIILLDLML--PGSDGIS 72 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR S VP++ ++ L + G DD + KP RE++ARV I RR + Sbjct: 73 ICREIRRFSDVPIMMVTAKTEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCQQQ 132 Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + QG L E R+L+ L G ++ Q+ + +Y + Sbjct: 133 REQPSESAPLLIDESRFQASYQGHFLELTPAEFRLLKILATQPGHVFSREQLLNNLYDDY 192 Query: 182 DEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 V + ++SHI LR+KL + + + +GY + Sbjct: 193 -RVVTDRTIDSHIKNLRRKLESLDGEKPFIRAVYGMGYRWE 232 >gi|167759417|ref|ZP_02431544.1| hypothetical protein CLOSCI_01764 [Clostridium scindens ATCC 35704] gi|167662974|gb|EDS07104.1| hypothetical protein CLOSCI_01764 [Clostridium scindens ATCC 35704] Length = 229 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 43/225 (19%), Positives = 93/225 (41%), Gaps = 10/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD L+ G DG+ ++ E L D+ ++ L E Sbjct: 6 LVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEALKLAKENAYDMILLDIML--PKHDGFE 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH------HREILARVAAIY 116 + + IR S VP++ ++ + + G DD + KP + + + R + Sbjct: 64 VCQQIREFSDVPIVMLTARGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRTSKR 123 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + ++ G +++ + R + + L +E +LE L N K ++ + + Sbjct: 124 DKAQPNDKIIIKGDMKIDCESRRVFIGEKEINLTAKEFDLLELLAMNPNKVYSRENLLNI 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++G ++ + V+ HI +LR+K+ N V +K +GY Sbjct: 184 VWG-YEYPGDARTVDVHIRRLREKIETNPSDPKYVYTKWGVGYYF 227 >gi|27363935|ref|NP_759463.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio vulnificus CMCP6] gi|37678907|ref|NP_933516.1| DNA-binding response regulator PhoB [Vibrio vulnificus YJ016] gi|320157317|ref|YP_004189696.1| phosphate regulon transcriptional regulatory protein PhoB (SphR) [Vibrio vulnificus MO6-24/O] gi|27360052|gb|AAO08990.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio vulnificus CMCP6] gi|37197648|dbj|BAC93487.1| DNA-binding response regulator PhoB [Vibrio vulnificus YJ016] gi|319932629|gb|ADV87493.1| phosphate regulon transcriptional regulatory protein PhoB (SphR) [Vibrio vulnificus MO6-24/O] Length = 229 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 36/222 (16%), Positives = 93/222 (41%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D A +++ + G + + D+ ++ L G G Sbjct: 5 ILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDTAVNKLAEPFPDLVLLDWMLPGGSGINF 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ + +P++ ++ + + + G DD + KP +E++AR+ A+ RR+ Sbjct: 65 IKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIRRVT 124 Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + + +++ + E ++L + M ++ + ++ Q+ + ++ Sbjct: 125 PTALEDVIDVQGLKLDPVSHRVTANDAPVDMGPTEFKMLHFFMTHQERVYSREQLLNNVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G + VE+ V+ HI +LRK L + + + R GY Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALEDAGHDKLIQTVRGAGYRF 225 >gi|228476127|ref|ZP_04060835.1| transcriptional regulatory protein ResD [Staphylococcus hominis SK119] gi|314936381|ref|ZP_07843728.1| DNA-binding response regulator SrrA [Staphylococcus hominis subsp. hominis C80] gi|228269950|gb|EEK11430.1| transcriptional regulatory protein ResD [Staphylococcus hominis SK119] gi|313655000|gb|EFS18745.1| DNA-binding response regulator SrrA [Staphylococcus hominis subsp. hominis C80] Length = 241 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 36/233 (15%), Positives = 85/233 (36%), Gaps = 14/233 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ + ++ + + L ++ L + Sbjct: 5 ILIVDDEDRIRRLLKLYLERESFTIHEASDGKEAYELAMENDYACILLDLML--PEMDGI 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112 E+ +R H P+I ++ ++ F+SG DD + KP RE + Sbjct: 63 EMSSKLREHKDTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQT 122 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + + + E + + +D + L +E +L YL K + Q Sbjct: 123 SKPEQSEPHARDVIEFNHLIIDNDAHRVLADQQQVNLTPKEYELLIYLAKTPNKVFDREQ 182 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG--FDPVDSKRFLGYSIDWN 223 + ++ ++ + V++H+ +LR+KL + + +GY + N Sbjct: 183 LLKEVW-HYEFYGDLRTVDTHVKRLREKLNRVSEEAAHMIQTVWGVGYKFEVN 234 >gi|269957269|ref|YP_003327058.1| winged helix family two component transcriptional regulator [Xylanimonas cellulosilytica DSM 15894] gi|269305950|gb|ACZ31500.1| two component transcriptional regulator, winged helix family [Xylanimonas cellulosilytica DSM 15894] Length = 243 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 43/229 (18%), Positives = 82/229 (35%), Gaps = 16/229 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G +E + R D ++ L G L Sbjct: 18 ILVVEDEPAIATAVAQRLTAEGWRVEVARDGLSAVDAAARLRPDAVVLDVML--PGIDGL 75 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112 E+ R I+A P++ ++ L G DD + KP RE Sbjct: 76 EVTRRIQADHPTPILMLTARDDETDMLVGLGVGADDYMTKPFSMRELVARVKALLRRVER 135 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 A ++ G + + R GE L E +L L ++ + + + Sbjct: 136 AQQAVVTSPADPPLVMGDVTIDRAQRRVHRAGEEVHLTPTEFELLVMLASSPKTVLTRER 195 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + ++ D + V+SHI LR+KL G D + + +GY+ + Sbjct: 196 LLAEVWDWADASG-TRTVDSHIKALRRKL----GPDLIRTVHGVGYAFE 239 >gi|81300262|ref|YP_400470.1| two component transcriptional regulator [Synechococcus elongatus PCC 7942] gi|81169143|gb|ABB57483.1| two component transcriptional regulator, winged helix family [Synechococcus elongatus PCC 7942] Length = 244 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 50/228 (21%), Positives = 97/228 (42%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++ G + E +A D+ ++ Sbjct: 8 ILVVDDEASIRRILETRLAMIGYEVVTAADGEEALITFRNATPDLVVLDVM--MPKLDGY 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + +R S VP+I ++ + + + G DD V KP +E+ AR+ ++ RR++ Sbjct: 66 GVCQELRKESDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVEK 125 Query: 122 SNNR-------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 S + IR+ ++ R E L E +LE L++ G+ ++ +I Sbjct: 126 SGANGIPSSGVIQINSIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRAEIL 185 Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 ++G + V+ VV+ HIS+LR KL + G + + + R GY Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPGNPELILTARGTGYLF 233 >gi|260776661|ref|ZP_05885556.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio coralliilyticus ATCC BAA-450] gi|260607884|gb|EEX34149.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio coralliilyticus ATCC BAA-450] Length = 229 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 36/222 (16%), Positives = 93/222 (41%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D A +++ + G + + D+ ++ L G G Sbjct: 5 ILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSAVTKLAEPFPDLVLLDWMLPGGSGINF 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ + +P++ ++ + + + G DD + KP +E++AR+ A+ RR+ Sbjct: 65 IKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIRRVT 124 Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + + +++ + + E ++L + M ++ + ++ Q+ + ++ Sbjct: 125 PTALEDVIDVQGLKLDPVSHRVTANDQPLDMGPTEFKMLHFFMTHQERVYSREQLLNNVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G + VE+ V+ HI +LRK L + + R GY Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALEAAGHDKLIQTVRGAGYRF 225 >gi|302552415|ref|ZP_07304757.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces viridochromogenes DSM 40736] gi|302470033|gb|EFL33126.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces viridochromogenes DSM 40736] Length = 245 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 47/230 (20%), Positives = 90/230 (39%), Gaps = 14/230 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V++ +G E ++ R D+ ++ L Sbjct: 13 ILIVDDEPAVREALQRSLAFEGYGTEVAVDGADALDKAAAYRPDLVVLDI--QMPRMDGL 70 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 R IRA P++ ++ ++ + D+G DD + KP E+ AR+ A+ RR Sbjct: 71 TAARRIRATGDTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSS 130 Query: 121 VSNNRA----------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + +R+ R+ G L R E +LE + + + + + Sbjct: 131 YAAAMGAGSPADEDALTFADLRMDLATREVTRGGRQVELTRTEFTLLEMFLTHPRQVLTR 190 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 QI A++G FD N ++ ++ LR+K V + R +GY + Sbjct: 191 EQILKAVWG-FDFEPSSNSLDVYVMYLRRKTEAGGEPRLVHTVRGVGYVL 239 >gi|253575399|ref|ZP_04852737.1| two-component system response regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251845396|gb|EES73406.1| two-component system response regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 225 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 41/222 (18%), Positives = 85/222 (38%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD + +G + N + L D+ ++ L Sbjct: 5 ILIIDDDKTISTMIRRGLTYEGYEVTVANGGKEGLNLVLEDEPDLIILDIM--MPDLDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 E+ + +R + +P++ ++ S+ + ++G DD + KP E++ARV Sbjct: 63 EVCKRLRKDAGIPILMVTGMDSIADRVHGLETGADDYLVKPFAFEELVARVKALLRRLDH 122 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 K + + + V R E +L + M + + + + + ++ Sbjct: 123 KKKEDEKLIFSDLVVDLSTRQAFRGSRTIEFSTTEFNLLCFFMKHPQQVLTRELLMDRVW 182 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G FD E NV+E ++ LR KL + + + R GY + Sbjct: 183 G-FDFRGESNVLEVYVGYLRSKLEAQNEPRLIHTVRGAGYVL 223 >gi|75909575|ref|YP_323871.1| two component transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75703300|gb|ABA22976.1| two component transcriptional regulator, winged helix family [Anabaena variabilis ATCC 29413] Length = 250 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 44/232 (18%), Positives = 91/232 (39%), Gaps = 16/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARE-------DVSAIEAFLI 54 ++++D L+++ ++G + S D+ ++ L Sbjct: 21 ILVVEDEELIQEMLAVALEEEGYGVVTAADGRSAVEYLKSFEPNGGDFPFDLVILDLML- 79 Query: 55 GKGEKVLELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113 L++ R++ + VP++ +S S + + G DD + KP RE++AR Sbjct: 80 -PQINGLDICRLLRHQGNPVPILMLSAKGSETDRVLGLEVGADDYLTKPFSMRELVARCR 138 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQG----EVFPLPRRERRILEYLMANRGKRVA 169 A+ RR ++ E + + L +E R+LE M+ + + Sbjct: 139 ALLRRQRLITLPQLPVLKFKDVTLNPQECRVLVRGQEVNLSPKEFRLLELFMSYARRVWS 198 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + Q+ ++G D + V+ HI LR+KL + + + + R GY Sbjct: 199 REQLLDQVWG-PDFVGDSKTVDVHIRWLREKLEQDPSHPEYIVTVRGFGYRF 249 >gi|317404463|gb|EFV84875.1| response regulator [Achromobacter xylosoxidans C54] Length = 232 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 45/222 (20%), Positives = 90/222 (40%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++++D +++ G + + + L + D+ ++ L G G + Sbjct: 5 ILVVEDEPAIQELIAVNLSFAGHKVLRAFDADQAQTLIRAELPDLILLDWMLPGTSGLAM 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 R VP+I ++ S Q +D ++G DD + KP +E++AR+ A+ RR Sbjct: 65 ARKLRNDERTRAVPVIMLTAKGSEQDKVDGLEAGADDYITKPFSPKELMARIKAVLRRRA 124 Query: 121 VSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++ + + E R+L + M + + +++Q+ ++ Sbjct: 125 PQLTDDVIDVGGLKLDPVTHRLSGNSQSLQIGPTEFRLLHFFMTHPERVFSRSQLLDQVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G VEE V+ HI +LRK L V++ R GY Sbjct: 185 GDH-VFVEERTVDVHIRRLRKALEPSGHDAHVETVRGSGYRF 225 >gi|196041427|ref|ZP_03108720.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|196027675|gb|EDX66289.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] Length = 232 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 53/229 (23%), Positives = 84/229 (36%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD A + D +G + E + + D+ ++ Sbjct: 6 ILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIM--MPKMDGY 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IRA +P+I +S S + G DD + KP E++ARV A RR Sbjct: 64 EVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 123 Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 N + + R V GE L +E IL L ++ K I Sbjct: 124 LNQPKVAENKSALEVGGVTIDPERRTVNVYGEQIELTPKEFDILYLLASHPKKVYNVENI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221 F ++ N V HI LRKKL +K + + +GY+ + Sbjct: 184 FQQVWADDYYEGG-NTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTFN 231 >gi|166032814|ref|ZP_02235643.1| hypothetical protein DORFOR_02529 [Dorea formicigenerans ATCC 27755] gi|166027171|gb|EDR45928.1| hypothetical protein DORFOR_02529 [Dorea formicigenerans ATCC 27755] Length = 235 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 48/224 (21%), Positives = 101/224 (45%), Gaps = 6/224 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + ++ +G + + + D++ I ++ Sbjct: 16 ILVVDDESRMRKLVKDFLEREGYQVLEAGDGLEAMEAFYAEK-DIALIILDVMMPKMDGW 74 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119 + R IR S+VP+I ++ + L FD GVD+ ++KP + ++ARV A + Sbjct: 75 QTCREIRQSSKVPIIMLTARGDERDELQGFDLGVDEYISKPFSPKILVARVNALLRRSNV 134 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++ E G I V +V G+ L +E +L Y + N+G +++ +I + ++ Sbjct: 135 LDADEHVEAGGIVVDKAAHQVQVDGKDVELSYKEFELLSYFLENQGIALSREKILNNVW- 193 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 +D + +++H+ KLR KL K + + + +GY + N Sbjct: 194 NYDYFGDARTIDTHVKKLRSKLGEKG--EYIKTIWGMGYKFEVN 235 >gi|11467431|ref|NP_043139.1| hypothetical protein CypaCp002 [Cyanophora paradoxa] gi|1351749|sp|P48259|YCF27_CYAPA RecName: Full=Probable transcriptional regulator ycf27; AltName: Full=OmpR-like protein gi|1016232|gb|AAA81319.1| ycf27 [Cyanophora paradoxa] Length = 239 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 41/229 (17%), Positives = 86/229 (37%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ G + E + ++ ++ Sbjct: 8 ILVVDDEISIRRILETRLSMIGYEVVTAADGEEALTIFQLEHPNLVVLDVM--MPKLDGY 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARVA 113 + + +R S +P+I ++ + + + G DD V KP +E + Sbjct: 66 GVCQELRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSLLRRTEN 125 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + G +++ + R GE L E +LE L++ G+ ++ QI Sbjct: 126 PTLSTTSTNGENLQIGFLKIDINKRQVFKNGERIRLTGMEFSLLELLISKMGEPFSRAQI 185 Query: 174 FSAIYG-LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++G + ++ VV+ HIS+LR KL D + + R +GY Sbjct: 186 LQEVWGYTPERHIDTRVVDVHISRLRSKLEENPSNPDLILTARGIGYLF 234 >gi|6687469|emb|CAB64972.1| VicR protein [Enterococcus faecalis] Length = 283 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 48/228 (21%), Positives = 93/228 (40%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + +G + E D+ ++ L L Sbjct: 53 ILVVDDEKPISEIVKYNLVKEGYEVFTAYDGEEALEKVEEVEPDLIILDLML--PKMDGL 110 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R +P+I ++ S + + G DD V KP +RE++ARV A RR Sbjct: 111 EVAREVRKTHDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRGAT 170 Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + AE + D +GE L RE +L YL + G+ + + + Sbjct: 171 NAKEAEVTTQSELTIGDLTIHPDAYMVSKRGEKIELTHREFELLYYLAKHIGQVMTREHL 230 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++G +D + V+ + +LR+K+ + + ++R +GY + Sbjct: 231 LQTVWG-YDYFGDVRTVDVTVRRLREKIEDSPSHPTYLVTRRGVGYYL 277 >gi|293603146|ref|ZP_06685580.1| phosphate regulon response regulator [Achromobacter piechaudii ATCC 43553] gi|292818540|gb|EFF77587.1| phosphate regulon response regulator [Achromobacter piechaudii ATCC 43553] Length = 232 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 45/222 (20%), Positives = 90/222 (40%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++++D +++ G + + + L + D+ ++ L G G + Sbjct: 5 ILVVEDEPAIQELIAVNLSFAGHKVLRAFDADQAQTLIRAELPDLILLDWMLPGTSGLAM 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 R VP+I ++ S Q +D ++G DD + KP +E++AR+ A+ RR Sbjct: 65 ARKLRNDERTRAVPVIMLTAKGSEQDKVDGLEAGADDYITKPFSPKELMARIKAVLRRRA 124 Query: 121 VSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++ + + E R+L + M + + +++Q+ ++ Sbjct: 125 PQLTDDVIDVGGLKLDPVTHRLSGNSQSLQIGPTEFRLLHFFMTHPERVFSRSQLLDQVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G VEE V+ HI +LRK L V++ R GY Sbjct: 185 GDH-VFVEERTVDVHIRRLRKALEPSGHDAHVETVRGSGYRF 225 >gi|228958269|ref|ZP_04119997.1| DNA-binding response regulator [Bacillus thuringiensis serovar pakistani str. T13001] gi|228801428|gb|EEM48317.1| DNA-binding response regulator [Bacillus thuringiensis serovar pakistani str. T13001] Length = 228 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 37/222 (16%), Positives = 92/222 (41%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ +G + D+ ++ Sbjct: 8 ILIVDDDPHIRELVSVFLEREGFQTYEAIDGVDALQKMDDVKVDMVILDIM--MPNMDGF 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ +R + +P++ ++ + F G DD + KP E++ RV A+ +R ++ Sbjct: 66 DVCFELRKYYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 125 Query: 122 SNNRAETGPIR-VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + +++ + + + LP +E +L L + G+ ++ Q+ I+G Sbjct: 126 TVSQSIQVGDVLLNRKTFEVTSGEQTVTLPLKEFELLFTLGSKSGRTCSREQLIEEIWG- 184 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D E ++ HI++LR+K + + + + R LGY ++ Sbjct: 185 YDFEGNERTLDVHINRLREKFQEEQSKFSIKTIRGLGYRLEV 226 >gi|228913968|ref|ZP_04077592.1| Two-component response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228926429|ref|ZP_04089501.1| Two-component response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228932679|ref|ZP_04095553.1| Two-component response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228944997|ref|ZP_04107358.1| Two-component response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229090352|ref|ZP_04221595.1| Two-component response regulator [Bacillus cereus Rock3-42] gi|229120938|ref|ZP_04250180.1| Two-component response regulator [Bacillus cereus 95/8201] gi|229172038|ref|ZP_04299603.1| Two-component response regulator [Bacillus cereus MM3] gi|229183591|ref|ZP_04310814.1| Two-component response regulator [Bacillus cereus BGSC 6E1] gi|228599834|gb|EEK57431.1| Two-component response regulator [Bacillus cereus BGSC 6E1] gi|228611381|gb|EEK68638.1| Two-component response regulator [Bacillus cereus MM3] gi|228662598|gb|EEL18196.1| Two-component response regulator [Bacillus cereus 95/8201] gi|228692935|gb|EEL46653.1| Two-component response regulator [Bacillus cereus Rock3-42] gi|228814666|gb|EEM60926.1| Two-component response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228826997|gb|EEM72757.1| Two-component response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228833253|gb|EEM78818.1| Two-component response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228845690|gb|EEM90717.1| Two-component response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 218 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 40/222 (18%), Positives = 83/222 (37%), Gaps = 7/222 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + ++ + G + + + D ++ L Sbjct: 2 LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIM--MPEMDGLS 59 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRLK 120 + + IR S VP+I ++ ++ G DD + KP E+ + Sbjct: 60 VCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTKQ 119 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + GPI + R E GE L +E +L +L + G+ ++ Q+ ++G Sbjct: 120 EQQEEIQFGPILINEKSRKIEADGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG- 178 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D A V++H+ +R KL + + +GY + Sbjct: 179 YDYAGSTRTVDTHVKTMRLKLGESGN--YIQTVWGVGYKFEV 218 >gi|206977475|ref|ZP_03238370.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217959463|ref|YP_002338015.1| DNA-binding response regulator [Bacillus cereus AH187] gi|229138688|ref|ZP_04267270.1| DNA-binding response regulator [Bacillus cereus BDRD-ST26] gi|206744325|gb|EDZ55737.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217066890|gb|ACJ81140.1| DNA-binding response regulator [Bacillus cereus AH187] gi|228644807|gb|EEL01057.1| DNA-binding response regulator [Bacillus cereus BDRD-ST26] Length = 225 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 36/222 (16%), Positives = 93/222 (41%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ +G + D+ ++ Sbjct: 5 ILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKIDEVKVDMVILDIM--MPNMDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ +R + +P++ ++ + F G DD + KP E++ RV A+ +R ++ Sbjct: 63 DVCFELRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 122 Query: 122 SNNRAETGPIR-VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + +++ + + + + LP +E +L L + G+ ++ Q+ ++G Sbjct: 123 TVSQSIQVGNVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKTGRTCSREQLIEDVWG- 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D E ++ HI++LR+K + + + + R LGY ++ Sbjct: 182 YDFEGNERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLEV 223 >gi|51892179|ref|YP_074870.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] gi|51855868|dbj|BAD40026.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] Length = 234 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 33/227 (14%), Positives = 81/227 (35%), Gaps = 10/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +G + + + D+ ++ L Sbjct: 10 ILVVDDDPKILKALDQALQQEGYEVYRAEDGLQALEMARKVKPDLMILDIML--PKMDGF 67 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH------HREILARVAAI 115 E+ +++ VP + +S + F+ G DD + KP + R A Sbjct: 68 EVLAQLQSTGGVPTLILSARGEEMDKVVGFNVGADDYLVKPFRLSELLLRVRAILRRTAG 127 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + I + R V+G+ L +E +L L ++ G ++ + Sbjct: 128 AGAPVDEDRPLKFRDIEINRSSRTVIVRGQPVDLTPKEFDLLWLLASHPGHVFSREALLQ 187 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 ++ + + +E + + +LR+K+ + + + + +GY D Sbjct: 188 RVW-HSEYSGDEAALTVCVRRLREKIERDPGHPELIKTIWGIGYKFD 233 >gi|116333280|ref|YP_794807.1| DNA-binding response regulator [Lactobacillus brevis ATCC 367] gi|116098627|gb|ABJ63776.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus brevis ATCC 367] Length = 235 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 40/232 (17%), Positives = 84/232 (36%), Gaps = 15/232 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + E L + DV ++ L +E Sbjct: 5 LVVDDEPAIVTLLQYNLEQADYQVVTAIDGEQALNLALHEKFDVILLDLML--PKMDGVE 62 Query: 63 LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH----------REILAR 111 + + +R + P+I I+ S T+ + G DD + KP Sbjct: 63 VTKRLRQEKVKTPIIMITAKTSEFDTVFGLELGADDYITKPFSPREVIARMKAVMRRYHE 122 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 +R + G + + D + + L +E +L + GK ++ Sbjct: 123 EEPTDTVPSQQGHRLQVGDLTIDQDKFQVKRGNQAIELTPKEFELLLFFAKRPGKVWSRE 182 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 Q+ ++G FD + + +V+ H+S LR+K+ + + + R GY+ + Sbjct: 183 QLLEGVWG-FDYSGQTRMVDIHVSHLREKIEQDPKHPTLLKTVRGFGYTFEV 233 >gi|253681323|ref|ZP_04862121.1| transcriptional regulatory protein ResD [Clostridium botulinum D str. 1873] gi|253562561|gb|EES92012.1| transcriptional regulatory protein ResD [Clostridium botulinum D str. 1873] Length = 228 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 41/224 (18%), Positives = 95/224 (42%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + G S E + + + D+ ++ L + Sbjct: 8 ILIVDDDENICEIIKMYLESSGYSTEIRYDGKSAQSAFFEYKPDLVLLDVML--PHMDGI 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 ++ + IR S++P+I ++ + + G DD + KP +E++AR+ Y Sbjct: 66 DVLKWIRRDSEIPVIMLTAKGETFDKVLALELGADDYIVKPFEPKELIARIKAVLRRYNT 125 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 V + + + + + + + +P +E +L YL +N K + Q+ ++ Sbjct: 126 ESVDRDILKFKGLTIDINSYIVIYKDKEIKMPPKEFELLYYLASNTNKVFTREQLLCEVW 185 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 G +D + V+ HI +LR+KL+ + +++ +GY + Sbjct: 186 G-YDYPGDSRTVDVHIKRLREKLQGDQDWQ-IETVWGVGYKFEV 227 >gi|33866776|ref|NP_898335.1| two-component response regulator [Synechococcus sp. WH 8102] gi|33639377|emb|CAE08761.1| two-component response regulator [Synechococcus sp. WH 8102] Length = 248 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 95/228 (41%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++ G ++ L + D+ ++ Sbjct: 11 ILVVDDEASIRRILETRLSMIGYNVVTACDGTEALELFENTAPDLVVLDVM--MPKLDGY 68 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 + + +R S VP++ ++ + + + G DD V KP +E+ AR+ + RR++ Sbjct: 69 GVCQELRKESDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRVEK 128 Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 ++ + +R+ ++ R E L E +LE L++ G+ + +I Sbjct: 129 ESVAGIPNSGVIQVSDLRIDTNKRQVFRADERIRLTGMEFSLLELLVSRSGEPFNRGEIL 188 Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 ++G + V+ VV+ HIS+LR KL + + + + R GY Sbjct: 189 KEVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGYLF 236 >gi|116669289|ref|YP_830222.1| two component transcriptional regulator [Arthrobacter sp. FB24] gi|116609398|gb|ABK02122.1| two component transcriptional regulator, winged helix family [Arthrobacter sp. FB24] Length = 226 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 50/225 (22%), Positives = 97/225 (43%), Gaps = 8/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D D L G +G +E ++ D+ ++ L G+ Sbjct: 4 ILIVEDEESFSDPLSYLLGKEGFEVEVVDNGLDAITEFDRNGADLVLLDLQL--PGQSGT 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117 E+ R +R S VP+I ++ + + + G DD V KP R + A + Sbjct: 62 EVCRQLRQRSSVPVIMLTAKDAEIDKVVGLELGADDYVTKPYSSRELVARVRAVLRRQGE 121 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 ++ N + GP+R+ + V GE LP +E +LE L+ N G+ + + Q+ + Sbjct: 122 PEELITNTVQAGPVRMDVERHVVSVDGEQVSLPLKEFELLEMLLRNSGRVLTRGQLIDRV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 +G D + ++ H+ +LR K+ + + + R LGY + Sbjct: 182 WG-SDYVGDTKTLDVHVKRLRSKIEPDPSAPRYLVTVRGLGYKFE 225 >gi|172058186|ref|YP_001814646.1| two component transcriptional regulator [Exiguobacterium sibiricum 255-15] gi|171990707|gb|ACB61629.1| two component transcriptional regulator, winged helix family [Exiguobacterium sibiricum 255-15] Length = 220 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 45/221 (20%), Positives = 90/221 (40%), Gaps = 8/221 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ +D +++ L G + + L SA D+ ++ Sbjct: 4 ILIAEDEFDIRELLTELLESSGYHVTSAANGMEALKLHQSATFDLMILDIM--MPYLDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-HREILARVAAIYRRLK 120 E+ + +R SQ P+I ++ + FD G+DD + KP + A I R Sbjct: 62 EVAQQVRKTSQTPIIFLTALQDEDNQVKGFDLGIDDYIAKPFSLRILLRRIEAVIRRIRT 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + I +F + + G L +E +IL L+ N G+ + + Q+ ++G Sbjct: 122 NDEEQLSFREITLFPASYNVLISGNAVILTLKEFQILHLLLENPGRVLEREQLIQQLWG- 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 FD + +++HI LRKK+ + + + +GY ++ Sbjct: 181 FDAFGDTRFLDTHIKNLRKKI----NVPYIQTVKGVGYKLE 217 >gi|228907707|ref|ZP_04071563.1| DNA-binding response regulator [Bacillus thuringiensis IBL 200] gi|228851940|gb|EEM96738.1| DNA-binding response regulator [Bacillus thuringiensis IBL 200] Length = 228 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 37/222 (16%), Positives = 92/222 (41%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ +G + D+ ++ Sbjct: 8 ILIVDDDPHIRELVSVFLEREGFQTYEAIDGVDALQKMDDVKVDMVILDIM--MPNMDGF 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ +R + +P++ ++ + F G DD + KP E++ RV A+ +R ++ Sbjct: 66 DVCFELRKYYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 125 Query: 122 SNNRAETGPIR-VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + +++ + + + LP +E +L L + G+ ++ Q+ I+G Sbjct: 126 TVSQSIQVGNVLLNRKTFEVISGEQTVTLPLKEFELLFTLGSKSGRTCSREQLIEEIWG- 184 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D E ++ HI++LR+K + + + + R LGY ++ Sbjct: 185 YDFEGNERTLDVHINRLREKFQEEQSKFSIKTIRGLGYRLEV 226 >gi|308050509|ref|YP_003914075.1| two component transcriptional regulator, winged helix family [Ferrimonas balearica DSM 9799] gi|307632699|gb|ADN77001.1| two component transcriptional regulator, winged helix family [Ferrimonas balearica DSM 9799] Length = 229 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 37/222 (16%), Positives = 86/222 (38%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D + +++ + G + S D+ ++ L G G ++ Sbjct: 5 ILIVEDESAIREMLTFVLDQHGFRTTSAADYDQGLNAISEPYPDLVLLDWMLPGGSGIQL 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118 + R Q+P+I ++ + + + G DD + KP +E+ + Sbjct: 65 AKALRQDEHTRQIPIIMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVLRRSA 124 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 E +R+ V+ + + E R+L + M + + ++ Q+ ++ Sbjct: 125 PTRLEEAVEVQGLRLDPVSHRVTVEEQGLDMGPTEFRLLHFFMTHPERVYSREQLLDNVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G + VE+ V+ HI +LRK ++ + + R GY Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKAIQETGHDKLIQTVRGAGYRF 225 >gi|229115474|ref|ZP_04244880.1| DNA-binding response regulator [Bacillus cereus Rock1-3] gi|228667887|gb|EEL23323.1| DNA-binding response regulator [Bacillus cereus Rock1-3] Length = 228 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 37/222 (16%), Positives = 93/222 (41%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ +G + D+ ++ Sbjct: 8 ILIVDDDPHIRELVSVFLEREGFQTYEAIDGIDALRKMDEVKVDMVILDIM--MPNMDGF 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ +R + +P++ ++ + F G DD + KP E++ RV A+ +R ++ Sbjct: 66 DVCFELRKYYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 125 Query: 122 SNNRAETGPIR-VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + +++ + + + + LP +E +L L + G+ ++ Q+ I+G Sbjct: 126 TVSQSIQVGNVLLNRKTFEVTLGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEEIWG- 184 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D E ++ HI++LR+K + + + + R LGY ++ Sbjct: 185 YDFEGNERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLEV 226 >gi|163854114|ref|YP_001642157.1| phosphate regulon transcriptional regulatory protein PhoB [Methylobacterium extorquens PA1] gi|163665719|gb|ABY33086.1| phosphate regulon transcriptional regulatory protein PhoB [Methylobacterium extorquens PA1] Length = 239 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 52/226 (23%), Positives = 95/226 (42%), Gaps = 8/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G ++ + + D+ ++ + G + Sbjct: 11 ILIVEDEESLTTLLRYNLEAEGFQVDVAVRGDEADLRLHETTPDLVLLDWMV--PGLSGI 68 Query: 62 ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IY 116 EL R IRA + P+I ++ + +G DD V KP E+LARV A Sbjct: 69 ELCRRIRARRETERLPVIMLTARGEETDRVRGLSTGADDYVVKPFSVPELLARVRALLRR 128 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + ++ G I + QG L E ++LEYLM + G+ ++ Q+ Sbjct: 129 AKPTHVSDMLVAGDIELDRVSHRIRRQGREIHLGPTEFKLLEYLMQSPGRVFSREQLLDG 188 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 ++G D ++E V+ H+ +LRK + DP+ + R GYS D Sbjct: 189 VWG-HDVYIDERTVDVHVGRLRKAINRPRQSDPIRTVRGSGYSFDE 233 >gi|186685833|ref|YP_001869029.1| two component transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186468285|gb|ACC84086.1| two component transcriptional regulator, winged helix family [Nostoc punctiforme PCC 73102] Length = 242 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 88/228 (38%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++ G + E D+ ++ Sbjct: 8 ILVVDDEASIRRILETRLSMIGYDVVTAGDGEEALETFRKTEPDLVVLDVM--MPKLDGY 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAA 114 + + +R S VP+I ++ + + + G DD V KP +E+ RV Sbjct: 66 GVCQELRKESDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDK 125 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 S+ I++ ++ R E L E +LE L++ G+ ++++I Sbjct: 126 NGASGIPSSGVIHVANIKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEAFSRSEIL 185 Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 ++G + V+ VV+ HIS+LR KL + + + + R GY Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLF 233 >gi|42784056|ref|NP_981303.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|47568029|ref|ZP_00238735.1| DNA-binding response regulator [Bacillus cereus G9241] gi|217962340|ref|YP_002340912.1| DNA-binding response regulator [Bacillus cereus AH187] gi|229141591|ref|ZP_04270123.1| Two component transcriptional regulator, winged helix [Bacillus cereus BDRD-ST26] gi|42739987|gb|AAS43911.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|47555332|gb|EAL13677.1| DNA-binding response regulator [Bacillus cereus G9241] gi|217065428|gb|ACJ79678.1| DNA-binding response regulator [Bacillus cereus AH187] gi|228641871|gb|EEK98170.1| Two component transcriptional regulator, winged helix [Bacillus cereus BDRD-ST26] Length = 232 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 53/229 (23%), Positives = 84/229 (36%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD A + D +G + E + + D+ ++ Sbjct: 6 ILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIM--MPKMDGY 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IRA +P+I +S S + G DD + KP E++ARV A RR Sbjct: 64 EVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 123 Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 N + + R V GE L +E IL L ++ K I Sbjct: 124 LNQPKVAENKSALEVGGVVIDPERRTVNVYGEQVELTPKEFDILYLLASHPKKVYNVENI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221 F ++ N V HI LRKKL +K + + +GY+ + Sbjct: 184 FQQVWADDYFEGG-NTVMVHIRTLRKKLGEDKRKNKLIKTVWGVGYTFN 231 >gi|311103716|ref|YP_003976569.1| phosphate regulon transcriptional regulatory protein PhoB [Achromobacter xylosoxidans A8] gi|310758405|gb|ADP13854.1| phosphate regulon transcriptional regulatory protein PhoB [Achromobacter xylosoxidans A8] Length = 232 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 45/222 (20%), Positives = 90/222 (40%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++++D +++ G + + + L + D+ ++ L G G + Sbjct: 5 ILVVEDEPAIQELIAVNLSFAGHKVLRAFDADQAQTLIRAELPDLILLDWMLPGTSGLAM 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 R VP+I ++ S Q +D ++G DD + KP +E++AR+ A+ RR Sbjct: 65 ARKLRNDERTRAVPVIMLTAKGSEQDKVDGLEAGADDYITKPFSPKELMARIKAVLRRRA 124 Query: 121 VSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++ + + E R+L + M + + +++Q+ ++ Sbjct: 125 PQLTDDVIDVGGLKLDPVTHRLSGNSQSLQIGPTEFRLLHFFMTHPERVFSRSQLLDQVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G VEE V+ HI +LRK L V++ R GY Sbjct: 185 GDH-VFVEERTVDVHIRRLRKALEPSGHDAHVETVRGSGYRF 225 >gi|228900580|ref|ZP_04064802.1| DNA-binding response regulator [Bacillus thuringiensis IBL 4222] gi|228859063|gb|EEN03501.1| DNA-binding response regulator [Bacillus thuringiensis IBL 4222] Length = 234 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 37/222 (16%), Positives = 92/222 (41%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ +G + D+ ++ Sbjct: 14 ILIVDDDPHIRELVSVFLEREGFQTYEAIDGVDALRKMDDVKVDMVILDIM--MPNMDGF 71 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ +R + +P++ ++ + F G DD + KP E++ RV A+ +R ++ Sbjct: 72 DVCFELRKYYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 131 Query: 122 SNNRAETGPIR-VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + +++ + + + LP +E +L L + G+ ++ Q+ I+G Sbjct: 132 TVSQSIQVGNVLLNRKTFEVTSGEQTVTLPLKEFELLFTLGSKSGRTCSREQLIEEIWG- 190 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D E ++ HI++LR+K + + + + R LGY ++ Sbjct: 191 YDFEGNERTLDVHINRLREKFQEEQSKFSIKTIRGLGYRLEV 232 >gi|67921096|ref|ZP_00514615.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Crocosphaera watsonii WH 8501] gi|67857213|gb|EAM52453.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Crocosphaera watsonii WH 8501] Length = 243 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 46/228 (20%), Positives = 96/228 (42%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++ G + E + A D+ ++ Sbjct: 8 ILVVDDEASIRRILETRLSMIGYDVVTAADGEEALDIFHEAIPDLVVLDVM--MPKLDGY 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + +R S +P+I ++ + + + G DD V KP +E+ AR+ ++ RR++ Sbjct: 66 GVCQELRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVEK 125 Query: 122 SNNRAETG-------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + I++ ++ R E L E +LE L++ G+ ++++I Sbjct: 126 NGAPGIPSSGVIAIASIKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEIL 185 Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 ++G + V+ VV+ HIS+LR KL + + + + R GY Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLF 233 >gi|228964356|ref|ZP_04125473.1| Two-component response regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|228795340|gb|EEM42830.1| Two-component response regulator [Bacillus thuringiensis serovar sotto str. T04001] Length = 218 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 40/222 (18%), Positives = 83/222 (37%), Gaps = 7/222 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + ++ + G + + + D ++ L Sbjct: 2 LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIM--MPEMDGLS 59 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRLK 120 + + IR S VP+I ++ ++ G DD + KP E+ + Sbjct: 60 VCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYTKQ 119 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + GPI + R E GE L +E +L +L + G+ ++ Q+ ++G Sbjct: 120 EQQEEIQFGPILINEKSRRIEADGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG- 178 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D A V++H+ +R KL + + +GY + Sbjct: 179 YDYAGSTRTVDTHVKTMRLKLGESGN--YIQTVWGVGYKFEV 218 >gi|119511035|ref|ZP_01630155.1| Two component Transcriptional regulator, Winged helix family protein [Nodularia spumigena CCY9414] gi|119464286|gb|EAW45203.1| Two component Transcriptional regulator, Winged helix family protein [Nodularia spumigena CCY9414] Length = 242 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 46/228 (20%), Positives = 90/228 (39%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++ G + E + D+ ++ Sbjct: 8 ILVVDDEASIRRILETRLSMIGYDVVTAGDGEEALETFRKSEPDLVVLDVM--MPKLDGY 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAA 114 + + +R S VP+I ++ + + + G DD V KP +E+ RV Sbjct: 66 GVCQELRKESDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDK 125 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 S+ G I++ ++ R E L E +LE L++ G+ ++++I Sbjct: 126 TGASGIPSSGVIHVGNIKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEAFSRSEIL 185 Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 ++G + V+ VV+ HIS+LR KL + + + + R GY Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLF 233 >gi|134298499|ref|YP_001111995.1| two component transcriptional regulator [Desulfotomaculum reducens MI-1] gi|134051199|gb|ABO49170.1| two component transcriptional regulator, winged helix family [Desulfotomaculum reducens MI-1] Length = 232 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 38/226 (16%), Positives = 82/226 (36%), Gaps = 9/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD + +G + E L ++ + D+ ++ L Sbjct: 6 ILIADDDHRIVKIVSHSLEQEGYRVITAKDGEQAVQLATTMKPDIVIMDIM--MPKLDGL 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAIY 116 E + I+ VP+I +S + + F GVDD KP R + Sbjct: 64 EASQKIKMKVDVPIIILSAKDDVVDKIVGFKMGVDDYQTKPFSPAELALRVKAVLRRSKA 123 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 K + + + R + G+ L +E +L + ++ + ++ Q+ Sbjct: 124 VPEKKGKDVLDYQNFYIEYSTRLVRIWGKEVTLTAKEFDMLWLMASHPNQIFSRLQLLEQ 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 I+ +E+ V HI +LR+K+ + + + + +GY + Sbjct: 184 IW-ESHFEGDEDTVTVHIRRLRRKIERDAAKPELIKTVWGVGYKFE 228 >gi|320547235|ref|ZP_08041528.1| DNA-binding response regulator [Streptococcus equinus ATCC 9812] gi|320448123|gb|EFW88873.1| DNA-binding response regulator [Streptococcus equinus ATCC 9812] Length = 236 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 52/232 (22%), Positives = 99/232 (42%), Gaps = 16/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G D+ ++ L G L Sbjct: 4 ILIVDDEKPISDIIKFNLTKEGYETVTAFDGREAIEKFEEENPDLIILDLML--PGLDGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + +R S +P+I +S S + + G DD V KP +RE+LARV A RR + Sbjct: 62 EVAKEVRKTSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTEN 121 Query: 122 ------------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 SN+ G +++ D + +GE L RE +L +L + G+ + Sbjct: 122 IESAVAEENASSSNSEITIGDLKILPDAFVAQKRGEDIELTHREFELLHHLATHMGQVMT 181 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + + ++G +D + V+ I +LR+K+ + + + ++R +GY + Sbjct: 182 REYLLETVWG-YDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYM 232 >gi|298243521|ref|ZP_06967328.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297556575|gb|EFH90439.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 240 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 49/234 (20%), Positives = 91/234 (38%), Gaps = 17/234 (7%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + D G L + D+ ++ L Sbjct: 5 ILIIEDEEGIIHLLNLYLKDAGYLTIAARDGADGLALHAREHPDLVVLDIMLPA--IDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IRA SQ P++ ++ + ++ + G DD + KP RE+++RV AI RR+ Sbjct: 63 EVCRRIRAWSQTPILMLTARSAEDDRINGLELGADDYLLKPFSPRELVSRVRAILRRIPS 122 Query: 122 SNNRAE--------------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167 S + V R EVQG L E +L + + + Sbjct: 123 SQEATPASKETKEDEKSVLRFPGLSVDLLARRVEVQGREVALTPTEFDLLALMAQSPDRV 182 Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + + ++G +D + + ++ HIS LRKK+ + + +GY + Sbjct: 183 FTREILMNKVWG-YDYLGDGHTIDVHISALRKKIEAGEQQRYIKTVWRVGYRFE 235 >gi|299821888|ref|ZP_07053776.1| DNA-binding response regulator [Listeria grayi DSM 20601] gi|299817553|gb|EFI84789.1| DNA-binding response regulator [Listeria grayi DSM 20601] Length = 235 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 46/232 (19%), Positives = 98/232 (42%), Gaps = 15/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + G + + + L + + D+ ++ L G + Sbjct: 4 ILVVDDELSIVTLLQFNIEKAGFEVITASDGQEGYELAIAEKPDLIVLDLML--PGMDGI 61 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ + +R+ P++ ++ + + G DD + KP RE++AR+ AI RR + Sbjct: 62 EVTKKLRSEKIDVPILMLTAKDEELDKIIGLELGADDYLTKPFSPREVVARIKAIMRRTE 121 Query: 121 VSNNRAETGPI----------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 AE +F + + ++ L +E +L +L N+GK ++ Sbjct: 122 SRKEAAEETESPTAELTIGDLHIFPESYEAYRGDQLLELTPKEFELLLFLATNKGKVFSR 181 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221 Q+ A++ +D E +V+ H+S LR+K+ + + R GY ++ Sbjct: 182 DQLLDAVW-NYDYIGETRIVDVHVSHLREKVEPDTKRPLYIKTIRGFGYKME 232 >gi|229105491|ref|ZP_04236132.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock3-28] gi|228677916|gb|EEL32152.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock3-28] Length = 232 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 53/229 (23%), Positives = 84/229 (36%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD A + D +G + E + + D+ ++ Sbjct: 6 ILIADDEAEIADLIEIHLKKEGYHVVKAADGEEAVHIIKTQPIDLVVLDIM--MPKMDGY 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IRA +P+I +S S + G DD + KP E++ARV A RR Sbjct: 64 EVTRQIRAKYHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFFT 123 Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 N + + R V GE L +E IL L ++ K I Sbjct: 124 LNQPKVAESKSALEIGGVIIDPERRTVNVYGEQIELTPKEFDILYLLASHPKKVYNVENI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221 F ++ N V HI LRKKL +K + + +GY+ + Sbjct: 184 FQQVWADDYYEGG-NTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTFN 231 >gi|119025295|ref|YP_909140.1| response regulator of two-component system [Bifidobacterium adolescentis ATCC 15703] gi|118764879|dbj|BAF39058.1| response regulator of two-component system [Bifidobacterium adolescentis ATCC 15703] Length = 235 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 55/230 (23%), Positives = 104/230 (45%), Gaps = 13/230 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++ + +G + + E L + D+ ++ L G Sbjct: 5 ILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGGIDLVLLDLML--PGLDGT 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R IR S+VP+I ++ + + + G DD + KP RE+LAR+ A+ RR ++ Sbjct: 63 ALCRRIREQSRVPIIMLTAKSAEIDKVVGLEIGADDYITKPYSFRELLARIRAVLRRNQM 122 Query: 122 ---------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + G I + + V+GE P +E +LEYLM N+G+ + + Q Sbjct: 123 VAESGEAADDDIPLVCGDISMRIGQHEVTVRGENVFFPLKEFELLEYLMQNKGRVMTRHQ 182 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221 + I+G D + ++ H+ ++R K+ + + + R LGY ID Sbjct: 183 LIDRIWG-SDYVGDTKTLDVHVKRVRAKIEEDPGHPKYLTTVRGLGYKID 231 >gi|323706233|ref|ZP_08117800.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium xylanolyticum LX-11] gi|323534397|gb|EGB24181.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium xylanolyticum LX-11] Length = 227 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 40/224 (17%), Positives = 90/224 (40%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++DD + + +G + + + ++ L G + Sbjct: 7 IYIVDDDRNICEIISLYLEKEGFATVKISDGITALNKIKEELPLLIILDLML--PGIDGM 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L + +R + VP+I ++ + + G DD + KP +E++ARV A+ RR + Sbjct: 65 TLCKEVRKFTNVPIIMLTAKGDTFDKVLGLEIGADDYIVKPFDGKELVARVKAVLRRYEH 124 Query: 122 SNNRAETGPIRVFSDG---RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 N +++ S + +GE L +E + +L + K + Q+ ++ Sbjct: 125 EENDSDSVTYPDLSISLSEYKVKYKGENVDLTPKELELFYFLCTHPNKVFTRDQLLENVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 G ++ + V+ HI +LR+K+ + + + +GY + Sbjct: 185 G-YEYMGDSRTVDVHIKRLREKIGDGPNWKL-TTVWGVGYKFEV 226 >gi|319652578|ref|ZP_08006692.1| response regulator receiver [Bacillus sp. 2_A_57_CT2] gi|317395652|gb|EFV76376.1| response regulator receiver [Bacillus sp. 2_A_57_CT2] Length = 231 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 47/228 (20%), Positives = 87/228 (38%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + + + E L D+ ++ L + Sbjct: 5 ILLVEDDREINKLIKDHLEQENFKVLTAFDGEEALSLFKKEEFDLILLDLML--PKFSGM 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + +R S +P++ IS S G DD ++KPI E+ ARV A RR Sbjct: 63 DILKKVREKSLLPVLIISAKGSDLDKALGLGFGADDYISKPISMIELTARVHAAIRRATQ 122 Query: 122 SNNRAETGPIRV--------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + +V+ ++ L +E IL+ M N+ + K QI Sbjct: 123 YIPATNHSAPAIIQFKELSLDLSTFSVQVKDKIAQLTSKEFHILKLFMTNQSRVFTKEQI 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + I+ D ENV+ HI +LR+K+ + + + +GY + Sbjct: 183 YQFIW-QDDYYGNENVINVHIRRLREKIEKDPSNPQYIRTIWGIGYKL 229 >gi|302205664|gb|ADL10006.1| Putative sensor kinase [Corynebacterium pseudotuberculosis C231] gi|308275899|gb|ADO25798.1| Putative sensor kinase [Corynebacterium pseudotuberculosis I19] Length = 232 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 42/220 (19%), Positives = 90/220 (40%), Gaps = 5/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + +G + + D+ ++ L G + Sbjct: 12 ILVVDDDPAISEMLTIVLEAEGFNTVAVTDGALAVETFNREEPDLVLLDLML--PGMNGI 69 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R+IR +S VP++ ++ + ++G DD + KP +E++AR+ A RR Sbjct: 70 DICRLIRQNSTVPIVMLTAKTDTVDVVLGLETGADDYITKPFKPKELIARLRARLRRTDD 129 Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + G EV L E +L L + G+ + ++ ++G Sbjct: 130 APADVIEISDLAIDVPGHVVSRGREVIQLTPLEFDLLLELASKPGQVFTREELLQKVWGY 189 Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219 + A + +V H+ +LR K+ + V + R +GY Sbjct: 190 RN-ASDTRLVNVHVQRLRAKIEKDPENPQIVLTVRGVGYK 228 >gi|225376457|ref|ZP_03753678.1| hypothetical protein ROSEINA2194_02099 [Roseburia inulinivorans DSM 16841] gi|225211833|gb|EEG94187.1| hypothetical protein ROSEINA2194_02099 [Roseburia inulinivorans DSM 16841] Length = 233 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 34/229 (14%), Positives = 86/229 (37%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + + N E ++ ++ L G Sbjct: 7 ILIVDDDNNIAELISLYLTKECFDTKIVNDGEEALTAFEQYNPNLILLDLML--PGIDGY 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARVA 113 ++ R +RA + VP+I +S + + + G DD + KP +E + Sbjct: 65 QVCREVRAKANVPIIMLSAKGEIFDKVLGLELGADDYMMKPFDSKELVARVKAVLRRYQP 124 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + + + G+ +P +E +L +L ++ + + Q+ Sbjct: 125 VKTEEVIPDLKCVKYEDLVINLSNYSVIYMGQAVDMPPKELELLYFLASSPNQVFTREQL 184 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 I+G ++ + V+ H+ +LR+K+++ + + +GY + Sbjct: 185 LDHIWG-YEYIGDTRTVDVHVKRLREKIKDHANWSL-ATVWGIGYKFEV 231 >gi|56422009|ref|YP_149327.1| two-component response regulator [Geobacillus kaustophilus HTA426] gi|297531668|ref|YP_003672943.1| two component transcriptional regulator, winged helix family [Geobacillus sp. C56-T3] gi|56381851|dbj|BAD77759.1| two-component response regulator [Geobacillus kaustophilus HTA426] gi|297254920|gb|ADI28366.1| two component transcriptional regulator, winged helix family [Geobacillus sp. C56-T3] Length = 237 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 45/229 (19%), Positives = 90/229 (39%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + E D+ ++ L K + Sbjct: 5 ILVVDDEKPIADILQFNLQKEGYEVICAYDGEEALQKVEETMPDLILLDIMLPLK--DGM 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112 E+ R +R +P+I ++ S + + G DD V KP RE Sbjct: 63 EVCREVRKKYDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHAQ 122 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 A + N GP+ + D + +GE L RE +L YL + G+ + + Sbjct: 123 TANQEEGENETNEIVIGPLVIRPDAYVVQKRGETIELTHREFELLHYLAKHIGQVMTREH 182 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + ++G +D + V+ + +LR+K+ + + + ++R +GY + Sbjct: 183 LLQTVWG-YDYYGDVRTVDVTVRRLREKIEDNPSHPNWIVTRRGVGYYL 230 >gi|228899978|ref|ZP_04064216.1| Two-component response regulator [Bacillus thuringiensis IBL 4222] gi|228859664|gb|EEN04086.1| Two-component response regulator [Bacillus thuringiensis IBL 4222] Length = 218 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 40/222 (18%), Positives = 83/222 (37%), Gaps = 7/222 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + ++ + G + + + D ++ L Sbjct: 2 LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIM--MPEMDGLS 59 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRLK 120 + + IR S VP+I ++ ++ G DD + KP E+ + Sbjct: 60 VCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGGDDYIVKPFSPGELVARMEAVLRRYTKQ 119 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + GPI + R E GE L +E +L +L + G+ ++ Q+ ++G Sbjct: 120 EQQEEIQFGPILINEKSRRIEADGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG- 178 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D A V++H+ +R KL + + +GY + Sbjct: 179 YDYAGSTRTVDTHVKTMRLKLGESGN--YIQTVWGVGYKFEV 218 >gi|229102593|ref|ZP_04233297.1| DNA-binding response regulator [Bacillus cereus Rock3-28] gi|228680820|gb|EEL34993.1| DNA-binding response regulator [Bacillus cereus Rock3-28] Length = 228 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 36/222 (16%), Positives = 93/222 (41%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ +G + D+ ++ Sbjct: 8 ILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKIDEVKVDMVILDIM--MPNMDGY 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ +R + +P++ ++ + F G DD + KP E++ RV A+ +R ++ Sbjct: 66 DVCFELRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 125 Query: 122 SNNRAETGPIR-VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + +++ + + + + LP +E +L L + G+ ++ Q+ ++G Sbjct: 126 TVSQSIQVGNVLLNRKTFEVTLGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG- 184 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D E ++ HI++LR+K + + + + R LGY ++ Sbjct: 185 YDFEGNERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLEV 226 >gi|218896944|ref|YP_002445355.1| DNA-binding response regulator [Bacillus cereus G9842] gi|218544709|gb|ACK97103.1| DNA-binding response regulator [Bacillus cereus G9842] Length = 225 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 37/222 (16%), Positives = 92/222 (41%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ +G + D+ ++ Sbjct: 5 ILIVDDDPHIRELVSVFLEREGFQTYEAIDGVDALRKMDDVKVDMVILDIM--MPNMDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ +R + +P++ ++ + F G DD + KP E++ RV A+ +R ++ Sbjct: 63 DVCFELRKYYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 122 Query: 122 SNNRAETGPIR-VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + +++ + + + LP +E +L L + G+ ++ Q+ I+G Sbjct: 123 TVSQSIQVGNVLLNRKTFEVTSGEQTVTLPLKEFELLFTLGSKSGRTCSREQLIEEIWG- 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D E ++ HI++LR+K + + + + R LGY ++ Sbjct: 182 YDFEGNERTLDVHINRLREKFQEEQSKFSIKTIRGLGYRLEV 223 >gi|182418948|ref|ZP_02950205.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Clostridium butyricum 5521] gi|237668366|ref|ZP_04528350.1| DNA-binding response regulator [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377231|gb|EDT74799.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Clostridium butyricum 5521] gi|237656714|gb|EEP54270.1| DNA-binding response regulator [Clostridium butyricum E4 str. BoNT E BL5262] Length = 232 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 38/228 (16%), Positives = 90/228 (39%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + G + + ++ ++ + G Sbjct: 6 ILIVDDEEHIVELLDFNLKNSGYETFIATDGIEAVRIAKEEKPNLILLDLMI--PGMDGF 63 Query: 62 ELPRII---RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAA 114 ++ + I + +I ++ + + G DD + KP R + A + Sbjct: 64 DVCKEIKKDKEMKNTSIIMLTAKGEELDKILGLELGADDYITKPFSVRELLARVKAVLRR 123 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N+ E+ ++V + + ++QG L +E +L+ L+ N+GK + + + Sbjct: 124 TASFNVEENDIYESKTLKVDFERHEVKIQGNKVDLTLKEFELLQILIKNKGKILKREMLL 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221 I+G ++ E V+ HI LRKK+ + +++ R +GY + Sbjct: 184 DKIWG-YEYIGETRTVDVHIRYLRKKIEEDDKNPKFIETIRGVGYRFN 230 >gi|282898613|ref|ZP_06306601.1| Two component Transcriptional regulator, Winged helix family [Cylindrospermopsis raciborskii CS-505] gi|281196481|gb|EFA71390.1| Two component Transcriptional regulator, Winged helix family [Cylindrospermopsis raciborskii CS-505] Length = 242 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 47/228 (20%), Positives = 90/228 (39%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++ G + E A D+ ++ Sbjct: 8 ILVVDDEASIRRILETRLSMIGYDVVTAGDGEEALETFRKADPDLVVLDVM--MPKLDGY 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAA 114 + + +R S VP+I ++ + + + G DD V KP +E+ RV Sbjct: 66 GVCQELRKESDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDK 125 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 S+ G I++ ++ R E L E +LE L++ G+ ++++I Sbjct: 126 NGTTGIPSSGVIHVGNIKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEAFSRSEIL 185 Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 ++G + V+ VV+ HIS+LR KL + + + + R GY Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLF 233 >gi|229918113|ref|YP_002886759.1| two component transcriptional regulator, winged helix family [Exiguobacterium sp. AT1b] gi|229469542|gb|ACQ71314.1| two component transcriptional regulator, winged helix family [Exiguobacterium sp. AT1b] Length = 229 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 45/226 (19%), Positives = 84/226 (37%), Gaps = 9/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD ++D ++ +G ++ + ++ L Sbjct: 8 ILVTDDEEQMRDLLVSNLEKEGYETVTASNGLEAIERLKEETFHLVLLDVM--MPELDGL 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117 IR S VP+I ++ + G DD + KP R I A + + Sbjct: 66 TACMRIREFSNVPIILLTARSEELDRIHGLKIGADDYITKPFSPRELLARIEATLRRTHS 125 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 K + G + + +GR V+G+ L R+E +L + N K ++ Q+ I Sbjct: 126 FSKEQEATFDVGILSIDIEGRAVSVKGKTVNLTRKEFDLLYLFITNDEKVFSREQLLDQI 185 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 +G + V++HI LR KL G + + +GY + N Sbjct: 186 WGT-EYHGNLRTVDTHIKTLRLKLGEAGG--YIQTVWGIGYKFEAN 228 >gi|218906075|ref|YP_002453909.1| DNA-binding response regulator [Bacillus cereus AH820] gi|218537222|gb|ACK89620.1| DNA-binding response regulator [Bacillus cereus AH820] Length = 232 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 53/229 (23%), Positives = 84/229 (36%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD A + D +G + E + + D+ ++ Sbjct: 6 ILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAMHIIETQPIDLVVLDIM--MPKMDGY 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IRA +P+I +S S + G DD + KP E++ARV A RR Sbjct: 64 EVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 123 Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 N + + R V GE L +E IL L ++ K I Sbjct: 124 LNQPKVAENKSALQVGGVTIDPERRTVNVYGEQIELTPKEFDILYLLASHPKKVYNVENI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221 F ++ N V HI LRKKL +K + + +GY+ + Sbjct: 184 FQQVWADDYYEGG-NTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTFN 231 >gi|228912339|ref|ZP_04076034.1| Two-component response regulator [Bacillus thuringiensis IBL 200] gi|228847322|gb|EEM92281.1| Two-component response regulator [Bacillus thuringiensis IBL 200] Length = 238 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 46/228 (20%), Positives = 86/228 (37%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + +G + + E D++ ++ Sbjct: 5 ILIVDDDTDIIELLKLFLEIEGFLVLEASDGEAALKYVKENHIDLAIVDIM--MPKMDGY 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 +L + +R + P++ +S + G DD + KP EI+ARV A RR Sbjct: 63 QLIKKVRETLKFPILILSAKTQEIDKIMGLGLGADDFIVKPFSPLEIIARVQAHLRRSYE 122 Query: 122 SN--------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 N N+ G + + + L E ++L M + G+ K QI Sbjct: 123 FNKNTLESTVNQIHIGNLILDHHSCMLYKYNKSITLSAIEYKLLTLFMEDPGRIFTKKQI 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 F ++ ++N + HIS+LR+KL + + + R LGY Sbjct: 183 FERVWSDH-YYSDDNAIMVHISRLREKLEDSPRNPVYIKTIRGLGYRF 229 >gi|229101090|ref|ZP_04231857.1| hypothetical protein bcere0019_2780 [Bacillus cereus Rock3-28] gi|228682333|gb|EEL36443.1| hypothetical protein bcere0019_2780 [Bacillus cereus Rock3-28] Length = 237 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 42/228 (18%), Positives = 90/228 (39%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD +++ + ++ + + L + ++ ++ + Sbjct: 6 ILIADDDKEIRNLLKIYLERELYMVDTAINGDEALQLFNKNNYNLVILDIM--MPKVDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R + VP++ ++ + G DD + KP E++ARV A+ RR V Sbjct: 64 EVCRKLRDKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKALMRRFLV 123 Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + + E L +E +L++ +N G+ KTQ+ Sbjct: 124 LGSNNTVQEKTTLAFKGLTINLNTYTVHTNKEEINLTGKELELLKFFTSNPGQVFTKTQL 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 F ++ + ++N V HI KLRKK+ + + + +GY Sbjct: 184 FRNVWD-DNYIEDDNTVMVHIRKLRKKIEIDSSNPKFIQTIWGIGYKF 230 >gi|251798473|ref|YP_003013204.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247546099|gb|ACT03118.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 230 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 48/228 (21%), Positives = 88/228 (38%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + F G E + + S D+ ++ L G Sbjct: 4 ILIVEDDPYIAELQKDYFALHGYEAEICHDGQDGLKQALSGDYDLIILDIQL--PGMSGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IR VP++ +S + F G DD V KP E++AR A R + Sbjct: 62 EICKTIRERLDVPILIVSAKNEELDKIRGFGFGADDFVTKPFSPNELVARAKAHLARYER 121 Query: 122 SNNRAETGPIR--------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + P + V + L +E +L ++ N + +K Q+ Sbjct: 122 FKSGQKISPDDSLRIRELTINPSSHRVFVHEQEVFLTAKEFEVLVFMATNPNRVFSKDQL 181 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 F I+GL D + V HIS++R+KL + +++ GY Sbjct: 182 FEKIWGL-DSNGDIATVTVHISRIREKLEADPSNPQFIETVWGAGYRF 228 >gi|134103391|ref|YP_001109052.1| two-component response regulator [Saccharopolyspora erythraea NRRL 2338] gi|291004390|ref|ZP_06562363.1| two-component response regulator [Saccharopolyspora erythraea NRRL 2338] gi|133916014|emb|CAM06127.1| two-component response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 226 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 53/225 (23%), Positives = 99/225 (44%), Gaps = 8/225 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D D L +G + + + D+ ++ L G + Sbjct: 5 LIVEDEESFADPLAFLLRKEGFTAAVATTGQEALEEFDRNGADIVLLDLML--PGMSGTD 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + +R S VP+I ++ S + + G DD V KP RE++ARV A+ RR + Sbjct: 63 VCKQLRQRSAVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARVRAVLRRGGEA 122 Query: 123 NNRAETG----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + P+R+ + V GE LP +E +LEYL+ N G+ + + Q+ ++ Sbjct: 123 EDMLPQVLEAGPVRMDVERHVVTVSGEEVSLPLKEFDLLEYLLRNVGRVLTRGQLIDRVW 182 Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 G D + ++ H+ +LR KL + + + R LGY + Sbjct: 183 GA-DYVGDTKTLDVHVKRLRSKLEPDPAEPRYLVTVRGLGYKFEV 226 >gi|124026776|ref|YP_001015891.1| two-component response regulator [Prochlorococcus marinus str. NATL1A] gi|123961844|gb|ABM76627.1| two-component response regulator [Prochlorococcus marinus str. NATL1A] Length = 246 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 48/231 (20%), Positives = 89/231 (38%), Gaps = 16/231 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V + G + E + D+ ++ L Sbjct: 4 ILVVDDEPAVLKVLVTRLNLAGYQVLSAQDGEQALEVFHKEAPDLVVLDVML--PKMDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------------L 109 + R IRA S VP+I ++ ++ + D G DD + KP +E+ Sbjct: 62 AVCRRIRAESCVPIIFLTALEAISERVAGLDLGADDYLAKPFSPKELEARIATILRRVGP 121 Query: 110 ARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 A R + + G + V ++ R GE L E +LE L + G+ V Sbjct: 122 APTIDEPREVPSGQGVMKLGDLVVDTNRRQVSRGGERIGLTYTEFSLLELLFRDPGRVVP 181 Query: 170 KTQIFSAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGY 218 + +I ++G A + VV+ ++++LR KL + + + R +GY Sbjct: 182 RAEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 232 >gi|298490023|ref|YP_003720200.1| winged helix family two component transcriptional regulator ['Nostoc azollae' 0708] gi|298231941|gb|ADI63077.1| two component transcriptional regulator, winged helix family ['Nostoc azollae' 0708] Length = 242 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 48/228 (21%), Positives = 90/228 (39%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++ G + E A D+ ++ Sbjct: 8 ILVVDDEASIRRILETRLSMIGYDVVTAGDGEEALETFRKAEPDLVVLDVM--MPKLDGY 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAA 114 + + +R S VP+I ++ + + + G DD V KP +E+ RV Sbjct: 66 GVCQELRKESDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDK 125 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 S+ G IR+ ++ R E L E +LE L++ G+ ++++I Sbjct: 126 TGATGIPSSGVIHVGNIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEAFSRSEIL 185 Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 ++G + V+ VV+ HIS+LR KL + + + + R GY Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLF 233 >gi|56477139|ref|YP_158728.1| phosphate regulon transcriptional regulatory protein phoB [Aromatoleum aromaticum EbN1] gi|56313182|emb|CAI07827.1| Phosphate regulon transcriptional regulatory protein phoB [Aromatoleum aromaticum EbN1] Length = 235 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 44/224 (19%), Positives = 86/224 (38%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D +++ A G + + E A D+ ++ L G + Sbjct: 5 ILLVEDELAIQELIAASLSRAGHRVVRASDAEEAAQRLRDALPDLVLLDWML--PGMTGI 62 Query: 62 ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIY 116 E R +R ++P+I ++ Q + +SG DD + KP RE+ Sbjct: 63 EFARRLRGDERTREIPIIMLTARGEEQDKVAGLESGADDYITKPFSPRELAARITAVLRR 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 R + + + E G +R+ L E R+L + M + + ++ Q+ Sbjct: 123 RAPQTTEDAVEAGDLRLDPVTHRVGCGDRPVALGPTEFRLLHFFMTHPERVHSRAQLLDK 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G VE+ V+ H+ +LR L + + R GY Sbjct: 183 VWGDH-VFVEDRTVDVHVRRLRAALEPSGHDQLIQTVRGSGYRF 225 >gi|228988116|ref|ZP_04148215.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228771614|gb|EEM20081.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 232 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 53/229 (23%), Positives = 84/229 (36%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD A + D +G + E + + D+ ++ Sbjct: 6 ILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIETQPIDLVVLDIM--MPKMDGY 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IRA +P+I +S S + G DD + KP E++ARV A RR Sbjct: 64 EVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 123 Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 N + + R V GE L +E IL L ++ K I Sbjct: 124 LNQPKVAENKSALAIGGVVIDPEQRTVNVYGEQIELTPKEFDILYLLASHPKKVYNVENI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221 F ++ N V HI LRKKL +K + + +GY+ + Sbjct: 184 FQHVWADDYYEGG-NTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTFN 231 >gi|306825161|ref|ZP_07458503.1| DNA-binding response regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432597|gb|EFM35571.1| DNA-binding response regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 235 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 49/234 (20%), Positives = 97/234 (41%), Gaps = 15/234 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + + L + + D+ ++ L L Sbjct: 4 ILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREAIELFEAEQPDIIILDLML--PEIDGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-------- 113 E+ + IR S VP+I +S S + + G DD V KP +RE+ ARV Sbjct: 62 EVAKAIRKTSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTDL 121 Query: 114 ---AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + + G + + D + GE L RE +L +L ++ G+ + + Sbjct: 122 ASVDSQESDEKKTQPLQIGDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHIGQVITR 181 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223 + ++G +D + V+ I +LR+K+ + + + ++R +GY + N Sbjct: 182 EHLLETVWG-YDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMKNN 234 >gi|119896456|ref|YP_931669.1| phosphate regulon transcriptional regulatory protein [Azoarcus sp. BH72] gi|119668869|emb|CAL92782.1| phosphate regulon transcriptional regulatory protein [Azoarcus sp. BH72] Length = 236 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 47/222 (21%), Positives = 85/222 (38%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 +L++D +++ A G + E + L A D+ ++ L G Sbjct: 5 ILLVEDEPAIQELIAANLSRAGHHVVRAADAEAAQRLVRDALPDLVLLDWMLPGMSGIDF 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 R ++P+I ++ Q + ++G DD + KP RE++AR+ A+ RR Sbjct: 65 ARRLRAEERTREIPIIMLTARGEEQDKVAGLETGADDYITKPFSPRELVARIKAVLRRRA 124 Query: 121 VSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 R+ L E R+L +LM + + ++ Q+ ++ Sbjct: 125 PQATEDAVELGGLRLDPATHRVTAGERALSLGPTEFRLLHFLMTHAERVHSRAQLLDQVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G VEE V+ HI +LR L + + R GY Sbjct: 185 GDH-VFVEERTVDVHIRRLRCALEPSAHDALIQTVRGSGYRF 225 >gi|127513677|ref|YP_001094874.1| two component transcriptional regulator [Shewanella loihica PV-4] gi|126638972|gb|ABO24615.1| two component transcriptional regulator, winged helix family [Shewanella loihica PV-4] Length = 241 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 34/224 (15%), Positives = 84/224 (37%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D +++ + G + + + S D+ ++ G + Sbjct: 17 ILIVEDELAIREMLAFVLEQHGFTTTTAEDFDSALDMLSEPYPDLVLLDWM--FPGGSGI 74 Query: 62 ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIY 116 +L + +R +P+I ++ + + + G DD + KP +E+ + Sbjct: 75 QLAKKLRQDEFTRHIPVIMLTARGEEEDKVKGLEVGADDYITKPFSPKELVARIKAVMRR 134 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + + V +V + E R+L + M + + ++ Q+ Sbjct: 135 AAPTALEEPIDVQGLVLDPVSHRVTVGDQVLEMGPTEFRLLHFFMTHPERVYSREQLLDN 194 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + VE+ V+ HI +LRK + + + R GY Sbjct: 195 VWGT-NVYVEDRTVDVHIRRLRKAVEPSNHDRLIQTVRGAGYRF 237 >gi|310827086|ref|YP_003959443.1| regulatory protein VanR [Eubacterium limosum KIST612] gi|308738820|gb|ADO36480.1| regulatory protein VanR [Eubacterium limosum KIST612] Length = 229 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 41/227 (18%), Positives = 82/227 (36%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D G++G ++ F S + +++ ++ Sbjct: 5 ILVVDDEQEIADLVELYLGNEGYAVRKFYSAQEALASGLENPPELAVLDVM--MPELDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-------REILARVAA 114 L R +R P+I ++ + G DD V KP + L R Sbjct: 63 TLCRRLREKYTFPIIMLTAREEEIDKITGLAIGADDYVTKPFRPLELVARVKAQLRRSQR 122 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + A + + + + + L E IL L NRG+ ++ ++F Sbjct: 123 YNGGQQEAGAIAAYRGLTLNRETHVCTLDEKPVELTPIEFSILWTLCKNRGRVISSEELF 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 ++G N V HI LR+K+++ + + +GY I Sbjct: 183 KEVWGEKYFTGN-NTVMVHIRHLREKMQDSAENPRYIKTVWGVGYKI 228 >gi|300113425|ref|YP_003760000.1| winged helix family two component transcriptional regulator [Nitrosococcus watsonii C-113] gi|299539362|gb|ADJ27679.1| two component transcriptional regulator, winged helix family [Nitrosococcus watsonii C-113] Length = 231 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 46/222 (20%), Positives = 94/222 (42%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +++DD A +++ +G + E + R D+ ++ L G G + Sbjct: 7 ILIVDDEAAIREMLGFALTQEGYHYQVAADGEQAWQQINEFRPDLILLDWMLPGISGVDL 66 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + + ++P+I ++ + + + G DD + KP E++AR+ A+ RR Sbjct: 67 ARRLKREPSTRELPVIMLTARDEEEDKVRGLNVGADDYITKPFSPMELIARIKAVLRRSA 126 Query: 121 V--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 S E +++ D V G + E R+L + + + + ++ Q+ ++ Sbjct: 127 PLLSGEVIEVNGLKLDPDSHRLSVGGAPLEMGPTEFRLLHFFLTHLERVYSRGQLIDYVW 186 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G + VEE V+ HI +LRK L + + R +GY Sbjct: 187 GN-NVYVEERTVDVHIRRLRKSLEPSGHDGLIQTVRGVGYRF 227 >gi|228957669|ref|ZP_04119416.1| Two-component response regulator [Bacillus thuringiensis serovar pakistani str. T13001] gi|229108854|ref|ZP_04238459.1| Two-component response regulator [Bacillus cereus Rock1-15] gi|229126714|ref|ZP_04255726.1| Two-component response regulator [Bacillus cereus BDRD-Cer4] gi|229149599|ref|ZP_04277831.1| Two-component response regulator [Bacillus cereus m1550] gi|228633945|gb|EEK90542.1| Two-component response regulator [Bacillus cereus m1550] gi|228656654|gb|EEL12480.1| Two-component response regulator [Bacillus cereus BDRD-Cer4] gi|228674623|gb|EEL29862.1| Two-component response regulator [Bacillus cereus Rock1-15] gi|228802011|gb|EEM48881.1| Two-component response regulator [Bacillus thuringiensis serovar pakistani str. T13001] Length = 218 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 40/222 (18%), Positives = 83/222 (37%), Gaps = 7/222 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + ++ + G + + + D ++ L Sbjct: 2 LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIM--MPEMDGLS 59 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRLK 120 + + IR S VP+I ++ ++ G DD + KP E+ + Sbjct: 60 VCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYTKQ 119 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + GPI + R E GE L +E +L +L + G+ ++ Q+ ++G Sbjct: 120 EQQEEIQFGPILINEKSRRIEADGESISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG- 178 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D A V++H+ +R KL + + +GY + Sbjct: 179 YDYAGSTRTVDTHVKTMRLKLGESGN--YIQTVWGVGYKFEV 218 >gi|170685581|ref|ZP_02876804.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|170670045|gb|EDT20785.1| DNA-binding response regulator [Bacillus anthracis str. A0465] Length = 232 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 53/229 (23%), Positives = 84/229 (36%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD A + D +G + E + + D+ ++ Sbjct: 6 ILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIM--MPKMDGY 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IRA +P+I +S S + G DD + KP E++ARV A RR Sbjct: 64 EVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 123 Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 N + + R V GE L +E IL L ++ K I Sbjct: 124 LNQPKVAENKSVLQVGGVTIDPERRTVNVYGEQIELTPKEFDILYLLASHPKKVYNVENI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221 F ++ N V HI LRKKL +K + + +GY+ + Sbjct: 184 FQQVWADDYYEGG-NTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTFN 231 >gi|116873390|ref|YP_850171.1| DNA-binding response regulator ResD [Listeria welshimeri serovar 6b str. SLCC5334] gi|116742268|emb|CAK21392.1| DNA-binding response regulator ResD [Listeria welshimeri serovar 6b str. SLCC5334] Length = 238 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 34/230 (14%), Positives = 90/230 (39%), Gaps = 14/230 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD ++ + +E + + + + +V ++ G+ +E Sbjct: 8 LVVDDEDRIRRLLKMYLERENYRIEEASDGDQALNMALNNNYEVILLDLM--MPGKDGIE 65 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARVA 113 + R +R + P++ ++ + F+ G DD + KP RE A+ + Sbjct: 66 VCRELREYKSTPVVMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKAVLRRAKQS 125 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + +++ ++ V G+ L +E +L YL + K + + Sbjct: 126 SEEATGGTPGDIITFPHLKIDNEAHRVIVDGKEIGLTPKEYDLLYYLAKSPDKVFDRESL 185 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLG--FDPVDSKRFLGYSID 221 ++ ++ + +++H+ +LR+KL + + + LGY + Sbjct: 186 LKEVW-RYEFFGDLRTIDTHVKRLREKLHDVSEDAARMIVTVWGLGYKFE 234 >gi|228945599|ref|ZP_04107949.1| DNA-binding response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228814117|gb|EEM60388.1| DNA-binding response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 234 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 36/222 (16%), Positives = 94/222 (42%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ +G + + D+ ++ Sbjct: 14 ILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINEVKVDMVILDIM--MPNMDGF 71 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ +R + +P++ ++ + F G DD + KP E++ RV A+ +R ++ Sbjct: 72 DVCFELRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 131 Query: 122 SNNRAETGPIR-VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + +++ + + + + LP +E +L L + G+ ++ Q+ ++G Sbjct: 132 TVSQSIQVGTVLLNRKTFEVAIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG- 190 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D E ++ HI++LR+K + + + + R LGY ++ Sbjct: 191 YDFEGNERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLEV 232 >gi|295090183|emb|CBK76290.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Clostridium cf. saccharolyticum K10] Length = 230 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 43/228 (18%), Positives = 85/228 (37%), Gaps = 9/228 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D ++G + F + + D++ ++ L Sbjct: 5 ILIVDDEQEIADLVSLYLTNEGFQVFKFYNAADAWSCIQTENLDLAILDVML--PDMNGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115 EL + IR Q P+I ++ + G DD + KP E+ R Sbjct: 63 ELCQKIREKYQYPVIMLTAKGEGIDKITGLTLGADDYITKPFLPLEMVARVKAQLRRYKH 122 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 Y +++ + + + + + G+ L E IL L +G+ V+ ++F Sbjct: 123 YNSGTQTDDVITYSGLVINTKTHECTLNGKALSLTPTEFSILRILCQKKGEVVSSEELFH 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 I+G + N + HI LRKK+ + + + GY I+ Sbjct: 183 EIWGDEYFSKSNNTITVHIRHLRKKMDDSFENPKYIKTVWGCGYKIEK 230 >gi|257064991|ref|YP_003144663.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Slackia heliotrinireducens DSM 20476] gi|256792644|gb|ACV23314.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Slackia heliotrinireducens DSM 20476] Length = 229 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 44/229 (19%), Positives = 83/229 (36%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD ++ D G ++ + + + DV ++ Sbjct: 5 ILVADDERDIRSVLRLYLEDAGYNVVEAADGKQALDVLLTQPVDVCLLDIM--MPEMDGY 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH--------HREILARVA 113 ++ + +R S VP+I +S + + G DD + KP + + I Sbjct: 63 QVLKRLRETSDVPVIVVSAKGQDPEKILGLNLGADDYMVKPFNPLEAVARVNTNIRRLKG 122 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + K + + + GE L E RI+ M + G+ K QI Sbjct: 123 MAAAQPKRPAKVLRCRNLELDQEACALTCNGEPVELTSVEYRIMAMFMQHPGRVFTKQQI 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + + D EN V +S+LR KL + G + + + R LGY ++ Sbjct: 183 YECGWDE-DYVAAENSVMVCMSRLRSKLGDD-GQEAIKTIRGLGYRLEK 229 >gi|154687436|ref|YP_001422597.1| YvrH1 [Bacillus amyloliquefaciens FZB42] gi|154353287|gb|ABS75366.1| YvrH1 [Bacillus amyloliquefaciens FZB42] Length = 239 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 45/226 (19%), Positives = 86/226 (38%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +++DD + D + +G ++ S E D+ ++ +G Sbjct: 6 ILIVDDEKAIVDMVKRVLVKEGYHNIKTAGSAEEAIEFVKHETADLLVLDVM--MEGMSG 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E IR ++ P+ ++ S L F G DD + KP + E+ AR+ A +R Sbjct: 64 FEACTEIRNYTDAPIFFLTARSSDADKLSGFALGADDYITKPFNPLELAARIRATLKRTY 123 Query: 121 VSNNRAETGPIRVFSDGRDPEVQG-----EVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + P+ E + ++L+Y + ++K QI+ Sbjct: 124 KREEKTAVKTYSYSHFSYSPQNAELIVGGEPVSCSAQLLQLLQYFCEHPDVVLSKDQIYE 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++G + + N V HI KLR+K+ + + + R LGY Sbjct: 184 KVWG-YPSYGDNNTVMVHIRKLREKIEKDPSNPSYIVTVRGLGYRF 228 >gi|86609993|ref|YP_478755.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)] gi|86558535|gb|ABD03492.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)] Length = 246 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 48/228 (21%), Positives = 99/228 (43%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++ G + + E + D+ ++ Sbjct: 9 ILVVDDEASIRRILETRLSMIGYDVVTASDGEEALEVFHKQDPDLVVLDVM--MPKLDGY 66 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + +R S +P+I ++ + + + G DD V KP +E+ AR+ ++ RR+ Sbjct: 67 GVCQELRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVAR 126 Query: 122 SNNR-------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 S + + G IR+ ++ R + E L E +LE L++ G+ ++++I Sbjct: 127 SAHDGIPSSGVIQVGDIRIDTNKRQVYKRDERIRLTGMEFSLLELLVSRSGEPFSRSEIL 186 Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 ++G + V+ VV+ HIS+LR KL + + + + R GY Sbjct: 187 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLF 234 >gi|315652944|ref|ZP_07905910.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986] gi|315484802|gb|EFU75218.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986] Length = 235 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 44/231 (19%), Positives = 92/231 (39%), Gaps = 14/231 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + + E + ++ ++ L G Sbjct: 7 ILIVDDDENIAELISLYLMKECYETKIVGDGESALNDFDEFKPNLVLLDLML--PGIDGY 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 ++ R IRA S P+I +S + + + G DD + KP +E++ARV A+ RR Sbjct: 65 QVCREIRAKSGTPVIMLSAKGEVFDKVLGLELGADDYMIKPFDSKELIARVKAVIRRYNS 124 Query: 120 --------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 E + V G+ +P +E +L +L ++ + + Sbjct: 125 STITVPELHNGGEYVEYPDLVVNMTNYAVTYLGKNVEMPPKELELLYFLSSHPNQVFTRE 184 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 Q+ I+G ++ + V+ HI +LR+K+ + F + + +GY + Sbjct: 185 QLLDNIWG-YEYIGDTRTVDVHIKRLREKIHDN-QFWSISTVWGIGYKFEV 233 >gi|297571966|ref|YP_003697740.1| two component transcriptional regulator, winged helix family [Arcanobacterium haemolyticum DSM 20595] gi|296932313|gb|ADH93121.1| two component transcriptional regulator, winged helix family [Arcanobacterium haemolyticum DSM 20595] Length = 224 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 43/219 (19%), Positives = 90/219 (41%), Gaps = 4/219 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + L +G + + L + D+ ++ L G + Sbjct: 3 ILVVDDDPGISEMVAILLESEGYDVSVCANGSNVVPLFRAEHPDLVLLDVML--PGLDGV 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R++R S VP+I +S + ++G DD V KP + +LARV RR + Sbjct: 61 SVCRLLREESDVPIIMMSAKTDSLDVIAGLEAGADDYVTKPFENSVLLARVKVRLRRQEN 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + + + + + E L E +L L + ++ ++ ++G + Sbjct: 121 ESEILKVADLSIDLKAHEVKRGHETVHLTPLEFDLLTVLARKPYQVFSREELLEQVWG-Y 179 Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219 + + +V HI +LR K+ + V + R +GY Sbjct: 180 RHSADTRLVNVHIQRLRAKVERDPENPGVVLTVRGVGYR 218 >gi|172038915|ref|YP_001805416.1| two-component response regulator [Cyanothece sp. ATCC 51142] gi|171700369|gb|ACB53350.1| two-component response regulator [Cyanothece sp. ATCC 51142] Length = 243 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 90/228 (39%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++ G + E + A D+ ++ Sbjct: 8 ILVVDDEASIRRILETRLSMIGYDVVTAADGEEALDIFHEAVPDLVVLDVM--MPKLDGY 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAA 114 + + +R S +P+I ++ + + + G DD V KP +E+ RV Sbjct: 66 GVCQELRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVEK 125 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 S+ I++ ++ R E L E +LE L++ G+ ++++I Sbjct: 126 NGAPGIPSSGVISIASIKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEIL 185 Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 ++G + V+ VV+ HIS+LR KL + + + + R GY Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLF 233 >gi|78043342|ref|YP_361360.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans Z-2901] gi|77995457|gb|ABB14356.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans Z-2901] Length = 236 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 49/224 (21%), Positives = 93/224 (41%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + +G + + + D+ ++ + Sbjct: 5 ILIVDDEPKIVTMVKSYLLKEGYEVITAFNGREALNSFYKEKPDLIVLDWM--MPEMSGI 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR SQ+P+I ++ L F+ GVDD V KP RE+ AR+ I +RL+ Sbjct: 63 EVLREIRKKSQIPIIMLTAKTEEVDKLIGFEFGVDDYVVKPFSLRELSARIKTILKRLEA 122 Query: 122 SNNRAETGPIRVF----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 E R+ ++G+ L E ++LE + N GK ++ ++ Sbjct: 123 KTINEEIVLTEGDLTLYPHKREVFLKGKPLDLTPTEFKLLEAFLKNPGKAYSRLELLEYA 182 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 G E +++HIS LRKK+ + + + + +GY + Sbjct: 183 IGEA-YEGYERTIDTHISNLRKKIEKDPANPEYIQTVFGIGYKL 225 >gi|4481749|gb|AAD21216.2| BacR [Bacillus licheniformis] Length = 238 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 43/226 (19%), Positives = 86/226 (38%), Gaps = 12/226 (5%) Query: 4 LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63 + DD ++D + ++ E L + ++ +E+ Sbjct: 8 IADDEKEIRDLLKTYLKRECYEVDVAVDGEDALRLFEQNHYHLVILDVM--MPKIDGIEV 65 Query: 64 PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL---- 119 R +R H+ VP++ ++ + G DD + KP E+LAR+ A+ RR Sbjct: 66 CRRMRNHTNVPILMLTAKDLEGDKILGLSIGADDYITKPFSVNEVLARIKAMLRRFLVLG 125 Query: 120 ----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + + + G+ L +E +L++ +N G+ KTQ+F Sbjct: 126 SESRSDEQSLIQFKGLTIDLKTYTVTAGGQEISLTAKEFELLKFFASNPGQVFTKTQLFR 185 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + ++N V HI +LRKK+ + + + +GY Sbjct: 186 NAWS-DQYIEDDNTVMVHIRRLRKKIEPDPSDPQFIQTVWGIGYKF 230 >gi|27468094|ref|NP_764731.1| staphylococcal respiratory response protein SrrA [Staphylococcus epidermidis ATCC 12228] gi|57866959|ref|YP_188632.1| DNA-binding response regulator SrrA [Staphylococcus epidermidis RP62A] gi|251810909|ref|ZP_04825382.1| response regulator [Staphylococcus epidermidis BCM-HMP0060] gi|282876082|ref|ZP_06284949.1| response regulator receiver domain protein [Staphylococcus epidermidis SK135] gi|293366547|ref|ZP_06613224.1| DNA-binding response regulator [Staphylococcus epidermidis M23864:W2(grey)] gi|27315640|gb|AAO04775.1|AE016748_9 staphylococcal respiratory response protein SrrA [Staphylococcus epidermidis ATCC 12228] gi|57637617|gb|AAW54405.1| DNA-binding response regulator SrrA [Staphylococcus epidermidis RP62A] gi|251805589|gb|EES58246.1| response regulator [Staphylococcus epidermidis BCM-HMP0060] gi|281295107|gb|EFA87634.1| response regulator receiver domain protein [Staphylococcus epidermidis SK135] gi|291319316|gb|EFE59685.1| DNA-binding response regulator [Staphylococcus epidermidis M23864:W2(grey)] gi|329725454|gb|EGG61937.1| transcriptional regulatory protein ResD [Staphylococcus epidermidis VCU144] gi|329735293|gb|EGG71585.1| transcriptional regulatory protein ResD [Staphylococcus epidermidis VCU045] gi|329737131|gb|EGG73385.1| transcriptional regulatory protein ResD [Staphylococcus epidermidis VCU028] Length = 241 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 36/232 (15%), Positives = 83/232 (35%), Gaps = 14/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ + + + L ++ L + Sbjct: 5 ILIVDDEDRIRRLLKLYLERESFEIHEARDGKEAYELALENNYACILLDLML--PEMDGI 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112 E+ +R H P+I ++ ++ F+SG DD + KP RE + Sbjct: 63 EVASKLREHKDTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQT 122 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 A + + + E + + +D + L +E +L YL K + Q Sbjct: 123 ANTEQSEPHARDIIEFSHLVIDNDAHRVLADDQQVNLTPKEYELLIYLAKTPNKVFDREQ 182 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSIDW 222 + ++ ++ + V++H+ +LR+KL + + + +GY + Sbjct: 183 LLKEVW-HYEFYGDLRTVDTHVKRLREKLNRVSSDAAQMIQTVWGVGYKFEV 233 >gi|312622290|ref|YP_004023903.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor kronotskyensis 2002] gi|312202757|gb|ADQ46084.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor kronotskyensis 2002] Length = 232 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 42/229 (18%), Positives = 94/229 (41%), Gaps = 11/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + +G + +S + + D+ ++ + Sbjct: 4 ILIVDDEQHILELLKFNLRKEGYNTFEADSGILALEILKHNKVDLVILDIM--MSDKDGY 61 Query: 62 ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AA 114 E+ + IR + P+I +S + + G DD + KP +E++ RV Sbjct: 62 EVLKEIRFNKDTKNLPVILLSAKSEEIDKILGLELGADDYITKPFSVKELVVRVKALLRR 121 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + ++ + G + V R + + PL +E +L+ L+ NRG+ + + I Sbjct: 122 VESLKPEVEDKVKFGDVEVDFSKRTVKKNNQDVPLSFKEFELLKLLIENRGRVLDRDFIL 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222 ++G ++ + V+ HI LR+KL + +++ R +GY + Sbjct: 182 QRVWG-YEFDGDTRTVDVHIRFLRRKLEDDEKNPRYIETVRGVGYRFNE 229 >gi|304569547|ref|NP_441728.2| OmpR subfamily [Synechocystis sp. PCC 6803] Length = 243 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 46/228 (20%), Positives = 95/228 (41%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++ G + E + D+ ++ Sbjct: 8 ILVVDDEASIRRILETRLSMIGYEVVTAADGEEAIATFHESDPDLVVLDVM--MPKLDGY 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + +R S +P+I ++ + + + G DD V KP +E+ AR+ ++ RR+ Sbjct: 66 GVCQELRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDK 125 Query: 122 SNNRA-------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + IR+ ++ R E L E +LE L++ G+ ++++I Sbjct: 126 NGMPGIPSSGVLQIATIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEIL 185 Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220 ++G + V+ VV+ HIS+LR KL + + + + R GY Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEEDPSNPELILTARGTGYLF 233 >gi|258423146|ref|ZP_05686039.1| response regulator protein [Staphylococcus aureus A9635] gi|257846596|gb|EEV70617.1| response regulator protein [Staphylococcus aureus A9635] Length = 244 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 35/232 (15%), Positives = 85/232 (36%), Gaps = 14/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ + + ++ + L ++ L + Sbjct: 8 ILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYDLAMENNYACILLDLML--PEMDGI 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112 ++ +R H Q P+I ++ ++ F+SG DD + KP RE + Sbjct: 66 QVATKLREHKQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQS 125 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + + + E + + +D + L +E +L YL K + Q Sbjct: 126 TTVEQSEPHARDVIEFKHLEIDNDAHRVLADNQEVNLTPKEYELLIYLAKTPNKVFDREQ 185 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKL--GFDPVDSKRFLGYSIDW 222 + ++ ++ + V++H+ +LR+KL + + +GY + Sbjct: 186 LLKEVW-HYEFYGDLRTVDTHVKRLREKLNRVSSEAAHMIQTVWGVGYKFEV 236 >gi|229090970|ref|ZP_04222194.1| DNA-binding response regulator [Bacillus cereus Rock3-42] gi|228692371|gb|EEL46106.1| DNA-binding response regulator [Bacillus cereus Rock3-42] Length = 234 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 37/222 (16%), Positives = 94/222 (42%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ +G + + D+ ++ Sbjct: 14 ILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINEVKVDMVILDIM--MPNMDGF 71 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ +R + +P++ ++ + F G DD + KP E+L RV A+ +R ++ Sbjct: 72 DVCFELRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELLVRVKALLKRYQI 131 Query: 122 SNNRAETGPIR-VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + +++ + + + + LP +E +L L + G+ ++ Q+ ++G Sbjct: 132 TVSQSIQVGTVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG- 190 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D E ++ HI++LR+K + + + + R LGY ++ Sbjct: 191 YDFEGNERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLEV 232 >gi|229093969|ref|ZP_04225060.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock3-42] gi|228689451|gb|EEL43265.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock3-42] Length = 232 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 53/229 (23%), Positives = 84/229 (36%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD A + D +G + E + + D+ ++ Sbjct: 6 ILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAMHIIETQPIDLVVLDIM--MPKMDGY 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IRA +P+I +S S + G DD + KP E++ARV A RR Sbjct: 64 EVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 123 Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 N + + R V GE L +E IL L ++ K I Sbjct: 124 LNQPKVAENKSALEVGGVTIDPERRTVNVYGEQIELTPKEFDILYLLASHPKKVYNVENI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221 F ++ N V HI LRKKL +K + + +GY+ + Sbjct: 184 FQHVWADDYYEGG-NTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTFN 231 >gi|206976960|ref|ZP_03237861.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|222098325|ref|YP_002532382.1| DNA-binding response regulator [Bacillus cereus Q1] gi|206744765|gb|EDZ56171.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|221242383|gb|ACM15093.1| DNA-binding response regulator [Bacillus cereus Q1] Length = 232 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 53/229 (23%), Positives = 84/229 (36%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD A + D +G + E + + D+ ++ Sbjct: 6 ILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIETQPIDLVVLDIM--MPKMDGY 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IRA +P+I +S S + G DD + KP E++ARV A RR Sbjct: 64 EVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 123 Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 N + + R V GE L +E IL L ++ K I Sbjct: 124 LNQPKVAENKSALEVGGVVIDPERRTVNVYGEQVELTPKEFDILYLLASHPKKVYNVENI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221 F ++ N V HI LRKKL +K + + +GY+ + Sbjct: 184 FQQVWADDYYEGG-NTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTFN 231 >gi|320091489|gb|ADW08982.1| SW-degrading-related protein 7 [Arthrobacter sp. HW08] Length = 227 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 49/220 (22%), Positives = 91/220 (41%), Gaps = 5/220 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD ++ +L G +E ++ D + A ++ L Sbjct: 8 LVVDDDPDIRSSLQSLLEAAGYQVESAADGREALEWVAATSPD--LLVADVVMPVMDGLG 65 Query: 63 LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R++RA VP++ ++ + + D+G DD ++KP E+LAR+ A+ RR Sbjct: 66 LCRMLRAAGNAVPILLLTARSDVADCVAGLDAGADDYLSKPFEPDELLARLRAMARRTTH 125 Query: 122 SNNRAETGPIRVF-SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + G L E IL L N + +++ QI A++G Sbjct: 126 LPASPAGYDDLELVPEAHAVRQNGRWIDLSSTEYAILCVLAENPEQALSRGQISDAVWG- 184 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + N +E +IS LR+KL + + + R +GY + Sbjct: 185 YAMTPASNSLEVYISYLRRKLEAEGEPRIIQTVRGVGYRL 224 >gi|218896331|ref|YP_002444742.1| DNA-binding response regulator [Bacillus cereus G9842] gi|218540658|gb|ACK93052.1| DNA-binding response regulator [Bacillus cereus G9842] Length = 223 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 40/222 (18%), Positives = 83/222 (37%), Gaps = 7/222 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + ++ + G + + + D ++ L Sbjct: 7 LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIM--MPEMDGLS 64 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRLK 120 + + IR S VP+I ++ ++ G DD + KP E+ + Sbjct: 65 VCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYTKQ 124 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + GPI + R E GE L +E +L +L + G+ ++ Q+ ++G Sbjct: 125 EQQEEIQFGPILINEKSRRIEADGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG- 183 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D A V++H+ +R KL + + +GY + Sbjct: 184 YDYAGSTRTVDTHVKTMRLKLGESGN--YIQTVWGVGYKFEV 223 >gi|163751022|ref|ZP_02158253.1| phosphate regulon response regulator PhoB [Shewanella benthica KT99] gi|161329183|gb|EDQ00182.1| phosphate regulon response regulator PhoB [Shewanella benthica KT99] Length = 229 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 35/224 (15%), Positives = 86/224 (38%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D +++ + G + + + S D+ ++ G + Sbjct: 5 ILIVEDELAIREMLKFVLEQHGFTTTSAEDFDSALNMISEPYPDLILLDWM--FPGGSGI 62 Query: 62 ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIY 116 +L + +R ++P+I ++ + + + G DD + KP +E+ + Sbjct: 63 QLAKRLRQDEFTRRIPIIMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARIKAVLRR 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 S + + + V +V + E R+L + M + + ++ Q+ Sbjct: 123 SSPTSSEEPIDVQGLMLDPVSHRVTVGDQVLEMGPTEFRLLHFFMTHPERVYSREQLLDN 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + VE+ V+ HI +LRK + + + R GY Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKAIEPSEHDHLIQTVRGAGYRF 225 >gi|309791544|ref|ZP_07686043.1| two component transcriptional regulator [Oscillochloris trichoides DG6] gi|308226404|gb|EFO80133.1| two component transcriptional regulator [Oscillochloris trichoides DG6] Length = 228 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 48/225 (21%), Positives = 94/225 (41%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +G+ ++ S E L + D+ ++ L Sbjct: 4 LLIVDDEPAIVTVIRERLEREGLHVQTVGSGEAALHLLNQQPIDLVLLDVGL--PDIDGF 61 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +RAH P++ ++ + + G DD V KP RE++AR A+ RR Sbjct: 62 EVLRRLRAHDLDTPVLLLTARGDEIDRVVGLELGADDYVVKPFSVRELVARARALLRRAT 121 Query: 121 VSNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + P+++ R Q + L RE +L +L + G+ ++ + Sbjct: 122 LRTRPAEPSVPPSPLQIDQPRRRATFQNHMLDLRPREFDLLAFLARHPGQVFSRDTLLRQ 181 Query: 177 IYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220 ++G D ++E V+ H+ +LR KL D + ++ +GY Sbjct: 182 VWGQ-DGFLDERTVDVHVRRLRAKLAEVDPEADLIQTEWGIGYRF 225 >gi|260584310|ref|ZP_05852057.1| DNA-binding response regulator VicR [Granulicatella elegans ATCC 700633] gi|260157828|gb|EEW92897.1| DNA-binding response regulator VicR [Granulicatella elegans ATCC 700633] Length = 238 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 53/229 (23%), Positives = 98/229 (42%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + E + S+ D+ ++ L + L Sbjct: 4 ILVVDDEKPISDIVKFSLSKEGFEVVTAFDGEEGLAVFSAENPDLVILDLML--PKIEGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR S VP+I ++ S + + G DD V KP +RE++ARV A RR + Sbjct: 62 EVCREIRKTSNVPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELIARVKANLRRQHI 121 Query: 122 SNNRAETGPI---------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 S + + D +GE L RE +L YL + G+ + + Sbjct: 122 SPTEPDEEKSANEIVLGSLIIHEDAYVVSKRGEEIELTHREFELLHYLAKHIGQVITREH 181 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + ++G +D + V+ + +LR+K+ + + ++R +GY I Sbjct: 182 LLQTVWG-YDYFGDVRTVDVTVRRLREKIEDTPSHPTWIMTRRGVGYYI 229 >gi|253582131|ref|ZP_04859355.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725] gi|251836480|gb|EES65017.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725] Length = 220 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 41/222 (18%), Positives = 91/222 (40%), Gaps = 9/222 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D +++ G + E + D+ ++ L + Sbjct: 4 ILIVEDEKEIRNILKVYLLTAGYEVTEAADGEEAMRIFYEKPFDLVVLDIML--PKKDGW 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119 + R I+ +S VP+I I+ + + F+ G DD + KP ++ + + Sbjct: 62 SICREIKEYSSVPVIIITARDNENDEVFGFEIGADDYITKPFSNKVFLARVKTILKNKSN 121 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 NN E G +++ L +E IL Y + N+ +++ ++ + I+G Sbjct: 122 ININNEIEIGNLKINDISHSVRKGEGDLDLAPKEYEILMYFIKNKNIALSREKMLTEIWG 181 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +D + +V+ HI LRKK+ + + + + R +GY + Sbjct: 182 -YDYTGNDRIVDVHIKNLRKKIGD----EYIKTIRSVGYKFE 218 >gi|225020670|ref|ZP_03709862.1| hypothetical protein CORMATOL_00677 [Corynebacterium matruchotii ATCC 33806] gi|305679950|ref|ZP_07402760.1| DNA-binding response regulator MtrA [Corynebacterium matruchotii ATCC 14266] gi|224946616|gb|EEG27825.1| hypothetical protein CORMATOL_00677 [Corynebacterium matruchotii ATCC 33806] gi|305660570|gb|EFM50067.1| DNA-binding response regulator MtrA [Corynebacterium matruchotii ATCC 14266] Length = 228 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 45/219 (20%), Positives = 90/219 (41%), Gaps = 5/219 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + + +G + N + D+ ++ L G ++ Sbjct: 10 LVVDDDPAISEMLTLVLSTEGFASVVVNDGGQAVEVFQRENPDLVLLDLML--PGMNGID 67 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR S VP++ ++ + +SG DD + KP +E++ARV A RR S Sbjct: 68 ICRAIRQESTVPIVMLTAKTDTVDVVLGLESGADDYIPKPFKPKELVARVRARLRRSDES 127 Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + + G GE L E +L L + G+ + ++ ++G Sbjct: 128 STDSMEVGDLLIDVPGHSVSRDGEEISLTPLEFDLLHELASKPGQVFTREELLQRVWGYR 187 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVD-SKRFLGYS 219 + A + +V H+ +LR K+ + + R +GY Sbjct: 188 N-ASDTRLVNVHVQRLRAKIEKDPEKPQIVLTVRGVGYK 225 >gi|261420883|ref|YP_003254565.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC61] gi|319768554|ref|YP_004134055.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC52] gi|261377340|gb|ACX80083.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC61] gi|317113420|gb|ADU95912.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC52] Length = 237 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 45/229 (19%), Positives = 90/229 (39%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + E D+ ++ L K + Sbjct: 5 ILVVDDEKPIADILQFNLQKEGYEVICAYDGEEALQKVEETMPDLILLDIMLPLK--DGM 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112 E+ R +R +P+I ++ S + + G DD V KP RE Sbjct: 63 EVCREVRKKYDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHAQ 122 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 A + N GP+ + D + +GE L RE +L YL + G+ + + Sbjct: 123 TANQEEGENETNEIVIGPLVIRPDAYIVQKRGETIELTHREFELLHYLAKHIGQVMTREH 182 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + ++G +D + V+ + +LR+K+ + + + ++R +GY + Sbjct: 183 LLQTVWG-YDYYGDVRTVDVTVRRLREKIEDNPSHPNWIVTRRGVGYYL 230 >gi|156741162|ref|YP_001431291.1| two component transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156232490|gb|ABU57273.1| two component transcriptional regulator, winged helix family [Roseiflexus castenholzii DSM 13941] Length = 229 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 47/223 (21%), Positives = 90/223 (40%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D A ++ A G + +S L D+ ++ L G + Sbjct: 5 ILIIEDEASIRTVARAYLEQAGFRVLLADSGPEGVELARHECPDLVILDLNL--PGMDGM 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYR 117 E+ +R S V ++ ++ + G DD V KP RE++ARV Sbjct: 63 EVAARLRQDSDVFIVMLTARSEESDRVAGLRIGADDYVIKPFSPRELVARVEAILRRRRS 122 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 N+ +++ D R+ V + L E +L L G+ +++ QI + Sbjct: 123 TTPAVNSTLRFAHMQIDPDRREVTVGDQTIDLTTTEFDVLLALARRHGRVLSREQILDLV 182 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G D + VV+ ++ ++R+KL G + + R +GY Sbjct: 183 WGN-DFYGTDRVVDVYVGQVRRKLEAVAGVSLIQTVRGVGYKF 224 >gi|302528403|ref|ZP_07280745.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. AA4] gi|302437298|gb|EFL09114.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. AA4] Length = 226 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 50/222 (22%), Positives = 94/222 (42%), Gaps = 7/222 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++I+D A V++G G ++ + E D+ ++ L G E Sbjct: 5 LVIEDDASVREGMELALRRQGHTVHTAATGEDGVAKLRERAPDLVVLDLML--PGIDGFE 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRRL 119 R IRA QVP+I ++ + ++G DD V KPI R + AR+ Sbjct: 63 TCRRIRALGQVPIIMLTARSDDFDVVAGLEAGADDYVVKPIEPRVLDARIRAVLRRTAAE 122 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + G + + G GE PL E ++L + G+ +++Q+ ++++G Sbjct: 123 PGAAGPEQHGDLVIDRAGMLVHKHGEQVPLTPTELKLLLEISRTPGQVHSRSQLLASVWG 182 Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 D + +V++ + +LR K+ + D V + R GY Sbjct: 183 -HDYLGDSRLVDACVQRLRAKIEDVPARPDHVQTVRGFGYRF 223 >gi|228907029|ref|ZP_04070894.1| Two-component response regulator [Bacillus thuringiensis IBL 200] gi|228852620|gb|EEM97409.1| Two-component response regulator [Bacillus thuringiensis IBL 200] Length = 218 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 40/222 (18%), Positives = 82/222 (36%), Gaps = 7/222 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + ++ + G + + D ++ L Sbjct: 2 LVVDDESDMRQLVGMYLDNFGYEWGEAEDGKEALKKLETDHYDFVVLDIM--MPEMDGLS 59 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRLK 120 + + IR S VP+I ++ ++ G DD + KP E+ + Sbjct: 60 VCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYTKQ 119 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + GPI + R E GE L +E +L +L + G+ ++ Q+ ++G Sbjct: 120 EQQEEIQFGPILINEKSRRIEADGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG- 178 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D A V++H+ +R KL + + +GY + Sbjct: 179 YDYAGSTRTVDTHVKTMRLKLGESGN--YIQTVWGVGYKFEV 218 >gi|229189480|ref|ZP_04316497.1| Two-component response regulator [Bacillus cereus ATCC 10876] gi|228594071|gb|EEK51873.1| Two-component response regulator [Bacillus cereus ATCC 10876] Length = 218 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 40/222 (18%), Positives = 84/222 (37%), Gaps = 7/222 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + ++ + G + + + D ++ L Sbjct: 2 LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIM--MPEMDGLS 59 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRLK 120 + + IR S VP+I ++ ++ G DD + KP E+ + Sbjct: 60 VCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYTKQ 119 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + GPI + R E GE+ L +E +L +L + G+ ++ Q+ ++G Sbjct: 120 EQQEEIQFGPILINEKSRRIEANGELISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG- 178 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D A V++H+ +R KL + + +GY + Sbjct: 179 YDYAGSTRTVDTHVKTMRLKLGESGN--YIQTVWGVGYKFEV 218 >gi|226310528|ref|YP_002770422.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226093476|dbj|BAH41918.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 238 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 44/227 (19%), Positives = 83/227 (36%), Gaps = 10/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +L+DD + + +G ++ + L D+ ++ L + Sbjct: 7 ILLVDDEEAILQMLQTVLKKEGFVQIDTCTTAAEAIRLVEEKTYDLLILDVML--PDKSG 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH------REILARVAA 114 EL +R ++ P+ ++ + L F G DD + KP H + R Sbjct: 65 FELCGAVRQRTKAPIFFLTAKGTDFDKLSGFAYGADDYITKPFHPLEVVARMKAHLRRTL 124 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 R + G +V + + V GE P + +L + + K QI+ Sbjct: 125 GGSAPSQEEKRYDFGRFQVNVEAAELFVNGERVDCPAQVFSLLVFFCQYPNRVFTKEQIY 184 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 ++ +EN V HI KLR+++ G + + R LGY + Sbjct: 185 DHVWKDEYGMFDENTVMVHIHKLRQRIEENPGQPKLLVTVRGLGYKL 231 >gi|16081093|ref|NP_391921.1| two-component response regulator YycG [Bacillus subtilis subsp. subtilis str. 168] gi|586808|sp|P37478|YYCF_BACSU RecName: Full=Transcriptional regulatory protein yycF gi|467327|dbj|BAA05173.1| unknown [Bacillus subtilis] gi|1064814|dbj|BAA11300.1| yycF [Bacillus subtilis] gi|2636588|emb|CAB16078.1| two-component response regulator [YycG] [Bacillus subtilis subsp. subtilis str. 168] Length = 235 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 41/228 (17%), Positives = 93/228 (40%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + + + + D+ ++ L + + Sbjct: 5 ILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEELQPDLILLDIML--PNKDGV 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR--------EILARVA 113 E+ R +R +P+I ++ S + + G DD V KP R + ++ Sbjct: 63 EVCREVRKKYDMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLRRQLT 122 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + S+N G + +F D + E L RE +L YL + G+ + + + Sbjct: 123 TAPAEEEPSSNEIHIGSLVIFPDAYVVSKRDETIELTHREFELLHYLAKHIGQVMTREHL 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++G +D + V+ + +LR+K+ + + + ++R +GY + Sbjct: 183 LQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPNWIVTRRGVGYYL 229 >gi|323489661|ref|ZP_08094888.1| transcriptional regulatory protein [Planococcus donghaensis MPA1U2] gi|323396792|gb|EGA89611.1| transcriptional regulatory protein [Planococcus donghaensis MPA1U2] Length = 238 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 32/231 (13%), Positives = 80/231 (34%), Gaps = 14/231 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD ++ +G +E + + ++ + + Sbjct: 8 LVVDDEERIRRLLKMYLEREGYVVEEAENGVQALDMALEKDYHCILLDLM--MPEKDGVA 65 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARVA 113 + +R P+I ++ ++ F++G DD + KP RE + Sbjct: 66 VATELRETKMTPIIMLTAKGEEANRVEGFEAGADDYIVKPFSPREVVLRVKAILRRSAAY 125 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + S + + + D G L +E +L +L K + + Sbjct: 126 SPISNSTASKDLVVFPHLTIDHDAHRVTADGVEVNLTPKEYELLYFLAKAPDKVFDREHL 185 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSIDW 222 ++ +D + V++H+ +LR+KL ++ + + +GY + Sbjct: 186 LKEVW-HYDFFGDLRTVDTHVKRLREKLNRVSESAAKMIVTVWGVGYKFEV 235 >gi|284052014|ref|ZP_06382224.1| two component transcriptional regulator [Arthrospira platensis str. Paraca] gi|291569758|dbj|BAI92030.1| two-component response regulator [Arthrospira platensis NIES-39] Length = 243 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 44/228 (19%), Positives = 89/228 (39%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++ G + E D+ ++ Sbjct: 8 ILVVDDEASIRRILETRLSMIGYDVVTAADGEEALETFRLTEPDLVVLDVM--MPKLDGY 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAA 114 + + +R S +P+I ++ + + + G DD V KP +E+ R+ Sbjct: 66 GVCQELRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRIDK 125 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 S+ + IR+ ++ R E L E +LE L++ G+ ++++I Sbjct: 126 NGASGIPSSGVIQIASIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEIL 185 Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 ++G + V+ VV+ HIS+LR KL + + + + R GY Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLF 233 >gi|110801877|ref|YP_697936.1| DNA-binding response regulator [Clostridium perfringens SM101] gi|110682378|gb|ABG85748.1| DNA-binding response regulator [Clostridium perfringens SM101] Length = 231 Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 48/227 (21%), Positives = 94/227 (41%), Gaps = 9/227 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD +++ +G +E + + + D+ ++ L LE Sbjct: 7 LIVDDEEHIRELIKFNLKKEGYDIEVAVNGTEALNIIREIKFDLILLDLML--PEIDGLE 64 Query: 63 LPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYR 117 + + IR S +P++ I+ + + G DD + KP RE++ARV A Sbjct: 65 VCKEIRRNEETSDIPVMMITAKGEEFDKVLGLELGADDYITKPFSIRELMARVKALLRRS 124 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 K N + G + V R+ + L +E +L+ L+ N+ + + + I Sbjct: 125 NFKKEENIIKFGDVVVNFKTREVIKGTQNVELTLKEFELLKLLIKNKDNILTRELLLDKI 184 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223 +G ++ E V+ HI LRKK+ + + + R +GY N Sbjct: 185 WG-YEYIGETRTVDVHIRHLRKKIESDDKNPQYIQTIRGVGYKFTSN 230 >gi|291453069|ref|ZP_06592459.1| two-component system response regulator [Streptomyces albus J1074] gi|291356018|gb|EFE82920.1| two-component system response regulator [Streptomyces albus J1074] Length = 223 Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 52/224 (23%), Positives = 95/224 (42%), Gaps = 8/224 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D D + +G + + D+ ++ L G E Sbjct: 2 LVVEDEESFSDALSYMLRKEGFEVAIAATGPEGLDEFERNGADLVLLDLML--PGLPGTE 59 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +R S VP+I ++ S + + G DD V KP RE++AR+ A+ RR Sbjct: 60 VCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGEP 119 Query: 123 NNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 GP+R+ D V G LP +E +LE L+ N G+ + + Q+ ++ Sbjct: 120 EEAVPQALEAGPVRMDVDRHVVTVSGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRVW 179 Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 G D + ++ H+ +LR K+ + + + R LGY + Sbjct: 180 GA-DYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFE 222 >gi|284929471|ref|YP_003421993.1| winged helix family two component transcriptional regulator [cyanobacterium UCYN-A] gi|284809915|gb|ADB95612.1| two component transcriptional regulator, winged helix family [cyanobacterium UCYN-A] Length = 243 Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 96/228 (42%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++ G + E + + D+ ++ Sbjct: 8 ILVVDDEASIRRILETRLSMIGYDVVTAADGEEALEIFYDSVPDLVVLDVM--MPKLDGY 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + +R S +P+I ++ + + + G DD V KP +E+ AR+ ++ RR++ Sbjct: 66 GVCQELRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVEK 125 Query: 122 SNNRAETG-------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 +N +++ ++ R E L E +LE L+ G+ ++++I Sbjct: 126 GSNPGIPNSGVISIASVKIDTNKRQVYKGDERIRLTGMEFSLLELLVGCSGEPFSRSEIL 185 Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 ++G + V+ VV+ HIS+LR KL + + + + R GY Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLF 233 >gi|239981204|ref|ZP_04703728.1| putative two-component system response regulator [Streptomyces albus J1074] Length = 226 Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 52/224 (23%), Positives = 95/224 (42%), Gaps = 8/224 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D D + +G + + D+ ++ L G E Sbjct: 5 LVVEDEESFSDALSYMLRKEGFEVAIAATGPEGLDEFERNGADLVLLDLML--PGLPGTE 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +R S VP+I ++ S + + G DD V KP RE++AR+ A+ RR Sbjct: 63 VCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGEP 122 Query: 123 NNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 GP+R+ D V G LP +E +LE L+ N G+ + + Q+ ++ Sbjct: 123 EEAVPQALEAGPVRMDVDRHVVTVSGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRVW 182 Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 G D + ++ H+ +LR K+ + + + R LGY + Sbjct: 183 GA-DYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFE 225 >gi|229095884|ref|ZP_04226862.1| Two-component response regulator [Bacillus cereus Rock3-29] gi|229101998|ref|ZP_04232711.1| Two-component response regulator [Bacillus cereus Rock3-28] gi|229114837|ref|ZP_04244250.1| Two-component response regulator [Bacillus cereus Rock1-3] gi|228668529|gb|EEL23958.1| Two-component response regulator [Bacillus cereus Rock1-3] gi|228681385|gb|EEL35549.1| Two-component response regulator [Bacillus cereus Rock3-28] gi|228687508|gb|EEL41408.1| Two-component response regulator [Bacillus cereus Rock3-29] Length = 218 Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 40/222 (18%), Positives = 83/222 (37%), Gaps = 7/222 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + ++ + G + + S D ++ L Sbjct: 2 LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLESDHYDFVVLDIM--MPEMDGLS 59 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRLK 120 + + IR S VP+I ++ ++ G DD + KP E+ + Sbjct: 60 VCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTKQ 119 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + GPI + R E G+ L +E +L +L + G+ ++ Q+ ++G Sbjct: 120 EQQEEIQFGPILINEKSRRIEADGDPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG- 178 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D A V++H+ +R KL + + +GY + Sbjct: 179 YDYAGSTRTVDTHVKTMRLKLGESGN--YIQTVWGVGYKFEV 218 >gi|163854786|ref|YP_001629084.1| response regulator [Bordetella petrii DSM 12804] gi|163258514|emb|CAP40813.1| response regulator [Bordetella petrii] Length = 232 Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 46/224 (20%), Positives = 91/224 (40%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D +++ G + E L + D+ ++ L G L Sbjct: 5 ILVVEDEPAIQELIAVNLSFAGHKVLRAFDAEQAHTLIRAELPDLILLDWML--PGTSGL 62 Query: 62 ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 L R +R VP+I ++ + Q ++ ++G DD + KP +E++AR+ A+ RR Sbjct: 63 TLARKLRDDERTRAVPVIMLTAKGAEQDKVEGLEAGADDYITKPFSPKELMARIKAVLRR 122 Query: 119 LKVSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 ++ + + E R+L + M + + +++Q+ Sbjct: 123 RAPQLTDDIIDVGGLKLDPVTHRLSGHEQALSIGPTEFRLLHFFMTHPERVFSRSQLLDQ 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G VEE V+ HI +LRK L V++ R GY Sbjct: 183 VWGDH-VFVEERTVDVHIRRLRKALEPSGHDAHVETVRGSGYRF 225 >gi|300779614|ref|ZP_07089470.1| two component system response regulator [Corynebacterium genitalium ATCC 33030] gi|300533724|gb|EFK54783.1| two component system response regulator [Corynebacterium genitalium ATCC 33030] Length = 224 Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 39/220 (17%), Positives = 86/220 (39%), Gaps = 5/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + +G D+ ++ L G + Sbjct: 5 ILVVDDDPAISEMLTIVLEAEGFEAVPVTDGGAAVGAFRDQDPDLVLLDLML--PGMSGV 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + IR S VP++ ++ + +SG DD + KP RE++AR+ A R+ Sbjct: 63 DICKEIRKESNVPIVMLTAKTDTVDVVLGLESGADDYITKPFKPRELIARIRARLRQNSE 122 Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + +V G+ L E +L L + + ++ +++G Sbjct: 123 EPSEILEIGDLQVDVPQHIVTRDGKEISLTPLEFDLLVELARKPQQVHTREELLESVWGY 182 Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219 + A + +V H+ +LR K+ + + + + R +GY Sbjct: 183 RN-ASDTRLVNVHVQRLRSKIEHDPENPEIILTVRGVGYK 221 >gi|52140648|ref|YP_086180.1| DNA-binding response regulator [Bacillus cereus E33L] gi|229199022|ref|ZP_04325708.1| Two component transcriptional regulator, winged helix [Bacillus cereus m1293] gi|51974117|gb|AAU15667.1| DNA-binding response regulator [Bacillus cereus E33L] gi|228584488|gb|EEK42620.1| Two component transcriptional regulator, winged helix [Bacillus cereus m1293] gi|324328753|gb|ADY24013.1| DNA-binding response regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 232 Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 53/229 (23%), Positives = 84/229 (36%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD A + D +G + E + + D+ ++ Sbjct: 6 ILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIM--MPKMDGY 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IRA +P+I +S S + G DD + KP E++ARV A RR Sbjct: 64 EVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 123 Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 N + + R V GE L +E IL L ++ K I Sbjct: 124 LNQPKVAENKSALEVGGVVIDPERRTVNVYGEQVELTPKEFDILYLLASHPKKVYNVENI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221 F ++ N V HI LRKKL +K + + +GY+ + Sbjct: 184 FQQVWADDYYEGG-NTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTFN 231 >gi|30019451|ref|NP_831082.1| two-component response regulator [Bacillus cereus ATCC 14579] gi|218236073|ref|YP_002366082.1| DNA-binding response regulator [Bacillus cereus B4264] gi|29894995|gb|AAP08283.1| Two-component response regulator [Bacillus cereus ATCC 14579] gi|218164030|gb|ACK64022.1| DNA-binding response regulator [Bacillus cereus B4264] gi|326939022|gb|AEA14918.1| two-component response regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 223 Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 40/222 (18%), Positives = 83/222 (37%), Gaps = 7/222 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + ++ + G + + + D ++ L Sbjct: 7 LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIM--MPEMDGLS 64 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRLK 120 + + IR S VP+I ++ ++ G DD + KP E+ + Sbjct: 65 VCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYTKQ 124 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + GPI + R E GE L +E +L +L + G+ ++ Q+ ++G Sbjct: 125 EQQEEIQFGPILINEKSRRIEADGESISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG- 183 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D A V++H+ +R KL + + +GY + Sbjct: 184 YDYAGSTRTVDTHVKTMRLKLGESGN--YIQTVWGVGYKFEV 223 >gi|206967797|ref|ZP_03228753.1| regulatory protein VanR [Bacillus cereus AH1134] gi|206736717|gb|EDZ53864.1| regulatory protein VanR [Bacillus cereus AH1134] Length = 232 Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 52/228 (22%), Positives = 84/228 (36%), Gaps = 10/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD + + +G + E + S D+ ++ Sbjct: 6 ILIADDDLKIAELIEIHLKKEGYQVVKATDGEAAIEIIQSQAIDLVVLDIM--MPKMDGY 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR +P+I +S S + G DD + KP E++ARV A RR Sbjct: 64 EVTRQIRTKQNMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 123 Query: 122 SNNRAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N + + + R V GE L +E IL L ++ K + IF Sbjct: 124 LNQPKVEETSVLEAGGVVIDFEKRTVHVYGERIDLTPKEFDILYLLASHPKKVYSLENIF 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221 I+ N V HI LRKKL +K + + +GY+ + Sbjct: 184 QQIWTNDYYDDNNNTVTVHIRTLRKKLGEDKRKNKLIKTIWGVGYTFN 231 >gi|209523923|ref|ZP_03272475.1| two component transcriptional regulator, winged helix family [Arthrospira maxima CS-328] gi|209495595|gb|EDZ95898.1| two component transcriptional regulator, winged helix family [Arthrospira maxima CS-328] Length = 236 Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 40/225 (17%), Positives = 87/225 (38%), Gaps = 8/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ +E E L D+ ++ L Sbjct: 6 ILVVDDDPAIRNLISRYLTQQNYEVESAKDGETALQLFDEFNPDLVILDVNL--PDTTGF 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L + ++ ++V ++ ++ + F+ G DD + KP E+ ARV AI +R + Sbjct: 64 ALCQEMQDRTRVFVLLLTSLTGEADKIKGFELGADDYITKPFGLAELGARVRAILKRQRS 123 Query: 122 SNNRAETGPIR----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + R+ + L E +L L G+ ++++ + Sbjct: 124 VEDTEMRSLTYGDLVIDPVRREVYISDRQISLSALEFDLLYCLAKKPGRAWRRSELLQEV 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221 + ++ E+ VV+ HI ++RKK+ + + R +GY D Sbjct: 184 WD-YEYEGEQRVVDVHIGQIRKKIEPDTDKPVLIKTIRGVGYMFD 227 >gi|149914856|ref|ZP_01903385.1| phosphate regulon transcriptional regulatory protein PhoB [Roseobacter sp. AzwK-3b] gi|149811044|gb|EDM70881.1| phosphate regulon transcriptional regulatory protein PhoB [Roseobacter sp. AzwK-3b] Length = 229 Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 52/221 (23%), Positives = 90/221 (40%), Gaps = 4/221 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVL 61 +L++D ++ DG + + E L A D+ ++ L G +V Sbjct: 9 LLVEDEPAQREVLSYNLEADGFRVTTAENGEEALLLVDEAAPDIIVLDWMLPNVSGIEVC 68 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119 + VP++ +S + ++G DD V KP E++ARV A R Sbjct: 69 RQLKTRADTRNVPILMLSARSEEVDRVRGLETGADDYVVKPYSVIELMARVRALLRRSRP 128 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 R E I + ++ + L E R+L M G+ ++ Q+ ++G Sbjct: 129 SAVGERLEYEDIVLDAETHRVTRSDKPLKLGPTEFRLLSTFMEKPGRVWSREQLLDRVWG 188 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D V+ V+ HI +LRK L G DP+ + R GY++ Sbjct: 189 R-DIYVDTRTVDVHIGRLRKALCQHGGGDPLRTVRGAGYAL 228 >gi|319893322|ref|YP_004150197.1| Two-component response regulator colocalized with HrtAB transporter [Staphylococcus pseudintermedius HKU10-03] gi|317163018|gb|ADV06561.1| Two-component response regulator colocalized with HrtAB transporter [Staphylococcus pseudintermedius HKU10-03] Length = 225 Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 46/218 (21%), Positives = 92/218 (42%), Gaps = 4/218 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + G S E D++ ++ G E Sbjct: 6 LIVDDDPEILNYVATHLQHKGYQAVTVASGEAALEYLEKHTIDIAIVDIM--MDGMDGFE 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L ++ + P+I ++ +L F +G DD V KP E++ R+ A+ RR +++ Sbjct: 64 LCETLKYDYEYPVIMLTARDALSDKERAFLAGTDDYVTKPFEVAELIFRIQAVLRRYQIA 123 Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 T + + +V+ + LP +E +L L+A + + Q+ I+G+ Sbjct: 124 TETLLTLGNLTIDQTQLEVKVETKGMILPHKEFELLSLLVAYPKQVFPREQLIEKIWGI- 182 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 D +E V+ HI +LR +L+ +++ R +GY Sbjct: 183 DYEGDERTVDVHIKRLRARLKKLGANVYIETVRGIGYK 220 >gi|261252149|ref|ZP_05944722.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio orientalis CIP 102891] gi|260935540|gb|EEX91529.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio orientalis CIP 102891] Length = 229 Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 37/222 (16%), Positives = 93/222 (41%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D A +++ + G + + D+ ++ L G G Sbjct: 5 ILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSAVTKLAEPFPDLVLLDWMLPGGSGINF 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ + +P++ ++ + + + G DD + KP +E++AR+ A+ RR+ Sbjct: 65 IKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIRRVT 124 Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + + +++ E + E ++L + M ++ + ++ Q+ + ++ Sbjct: 125 PTALEDVIDVQGLKLDPVSHRVTANDEPLDMGPTEFKMLHFFMTHQERVYSREQLLNNVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G + VE+ V+ HI +LRK L + + R GY Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALEAAGHDKLIQTVRGAGYRF 225 >gi|150390957|ref|YP_001321006.1| two component transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149950819|gb|ABR49347.1| two component transcriptional regulator, winged helix family [Alkaliphilus metalliredigens QYMF] Length = 225 Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 49/223 (21%), Positives = 96/223 (43%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D ++ + VS+ + L + D+ ++ L Sbjct: 6 ILLVEDEKNLRKLVATYLKKEMVSVIEAADGKEALVLWEEEQYDLIIVDIML--PEYDGW 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119 + + IR S VP++ ++ L FD GVDD + KP +E++ARV A Sbjct: 64 TICKRIREKSNVPILILTARSEEHDKLFGFDLGVDDYMTKPFSVKELVARVKALLKRSNR 123 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++S ++V G +QGE L +E +L + N+ + +++ I ++G Sbjct: 124 QLSTETLIVQGLKVDKKGHQVFLQGERLMLTPKEYDLLLIFLHNQNQALSREVILDGVWG 183 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D + V++H+ +LR KL+ + + R LGY + Sbjct: 184 -YDYYGDLRTVDTHVKRLRHKLKEMGEQ--IKTVRGLGYRFEV 223 >gi|163848057|ref|YP_001636101.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222525947|ref|YP_002570418.1| winged helix family two component transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163669346|gb|ABY35712.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222449826|gb|ACM54092.1| two component transcriptional regulator, winged helix family [Chloroflexus sp. Y-400-fl] Length = 225 Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 44/221 (19%), Positives = 94/221 (42%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + +G ++ L S+ D+ ++ L G L Sbjct: 4 ILVIEDETEIASFLRRGLSLEGYQVDVAFDGTRGLELASTGTYDLIVLDLML--PGIDGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119 E+ R +RA S VP+I ++ +++ + ++G DD + KP E+ R R+ Sbjct: 62 EVARRLRADSNVPIIMLTARDAVRDRVAGLEAGADDYLVKPFAFEELLARIRAQLRRRQS 121 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + + + + R+ V L +E +LE M + + + + I+ ++ Sbjct: 122 GQAQDVLRFANLTLDTRSRELRVGDRRVELTAKEYDLLELFMRHPNQVLTRDIIYDRVW- 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D E N++E ++ LR+KL + + R +GY + Sbjct: 181 NYDFGGESNILEVYVRYLRQKLEANGEPRLIHTVRSVGYIL 221 >gi|332296523|ref|YP_004438446.1| two component transcriptional regulator, winged helix family [Thermodesulfobium narugense DSM 14796] gi|332179626|gb|AEE15315.1| two component transcriptional regulator, winged helix family [Thermodesulfobium narugense DSM 14796] Length = 230 Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 49/224 (21%), Positives = 101/224 (45%), Gaps = 5/224 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G ++ ++ L S D+ ++ + G Sbjct: 7 ILVVEDEYNLARYLQLELEHEGYLVDTADNGYEAIGLFSEKDFDLVLLDLMI--PGIDGF 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + ++A V +I ++ +++ + D G DD V KP E++AR+ A R+ Sbjct: 65 EVCKRMKAQKDVAIIILTARDAVKDKVKGLDLGADDYVTKPFVIEELIARIRARLRKGTK 124 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + G + + R+ + + L ++E +L+YL N GK + + I + ++G + Sbjct: 125 DLEQIVVGDLVISPQTREVKRADKSVNLSKKEFDLLKYLAENVGKVLNRDTILNHVWG-Y 183 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY--SIDWN 223 D ENVV+ +I LR K+ + + + R +GY ID N Sbjct: 184 DYYGSENVVDVYIRYLRAKIDDPFENKILHTVRGVGYALKIDSN 227 >gi|229107947|ref|ZP_04237575.1| hypothetical protein bcere0018_2410 [Bacillus cereus Rock1-15] gi|228675509|gb|EEL30725.1| hypothetical protein bcere0018_2410 [Bacillus cereus Rock1-15] Length = 237 Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 42/228 (18%), Positives = 90/228 (39%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD +++ + ++ + E L + ++ ++ + Sbjct: 6 ILIADDDKEIRNLLKIYLERELYMVDTAINGEEALHLFNQNNYNLVILDFM--MPKIDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + +R + VP++ ++ + G DD + KP E++ARV A+ RR V Sbjct: 64 EVCKKLRDKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVIARVKALMRRFLV 123 Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + + E L +E +L++ +N G+ KTQ+ Sbjct: 124 LGSNNTAQEKTTLSFKGLTINLNTYTVHTNKEEISLTGKELELLKFFTSNPGQVFTKTQL 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 F ++ + ++N V HI KLRKK+ + + + +GY Sbjct: 184 FRNVWD-DNYIEDDNTVMVHIRKLRKKIEIDPSNPKFIQTIWGIGYKF 230 >gi|297193530|ref|ZP_06910928.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|197718196|gb|EDY62104.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 237 Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 47/228 (20%), Positives = 90/228 (39%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V++ +G E D+ ++ L Sbjct: 7 ILIVDDEPAVREALQRSLAFEGYGTEVAADGIDALARAEVYAPDLIVLDI--QMPRMDGL 64 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 R +R A S VP++ ++ ++ + D+G DD + KP E+ AR+ A+ RR Sbjct: 65 TAARRLRAAGSTVPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSS 124 Query: 121 V--------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + +R+ R+ L R E +LE +A+ + + + Q Sbjct: 125 YASAGPGGAEEDVLSFADLRMDLATREVTRGTRRVELTRTEFTLLELFLAHPRQVLTREQ 184 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I A++G FD N ++ ++ LR+K V + R +GY++ Sbjct: 185 ILKAVWG-FDFEPSSNSLDVYVMYLRRKTEAAGEPRLVHTVRGVGYAL 231 >gi|229099332|ref|ZP_04230263.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock3-29] gi|229118343|ref|ZP_04247699.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock1-3] gi|228665173|gb|EEL20659.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock1-3] gi|228684150|gb|EEL38097.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock3-29] Length = 232 Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 53/229 (23%), Positives = 84/229 (36%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD A + D +G + E + + D+ ++ Sbjct: 6 ILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQSIDLVVLDIM--MPKMDGY 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IRA +P+I +S S + G DD + KP E++ARV A RR Sbjct: 64 EVTRQIRAKYHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFFT 123 Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 N + + R V GE L +E IL L ++ K I Sbjct: 124 LNQPKVAESKSALEIGGVIIDPERRTVNVYGEQIELTPKEFDILYLLASHPKKVYNVENI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221 F ++ N V HI LRKKL +K + + +GY+ + Sbjct: 184 FQQVWADDYYEGG-NTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTFN 231 >gi|225351103|ref|ZP_03742126.1| hypothetical protein BIFPSEUDO_02689 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225158559|gb|EEG71801.1| hypothetical protein BIFPSEUDO_02689 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 234 Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 50/231 (21%), Positives = 95/231 (41%), Gaps = 13/231 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++ + +G + + E L + D+ ++ L G Sbjct: 4 ILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGGIDLVLLDLML--PGLDGT 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112 L R IR S+VP+I ++ + + + G DD + KP RE ++ Sbjct: 62 ALCRRIREQSRVPIIMLTAKSAEIDKVVGLEIGADDYITKPYSFRELLARVRAVLRRNQM 121 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 A + G I + + V+GE P +E +LEYLM N+G+ + + Q Sbjct: 122 VADATESSDDDIPLICGDISMKIGQHEVMVRGENVFFPLKEFELLEYLMQNKGRVMTRHQ 181 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDW 222 + I+G D + ++ H+ ++R K+ + + R LGY ID Sbjct: 182 LIDRIWG-SDYVGDTKTLDVHVKRVRSKIEEDPAHPKYLTTVRGLGYKIDV 231 >gi|254432325|ref|ZP_05046028.1| DNA-binding response regulator [Cyanobium sp. PCC 7001] gi|197626778|gb|EDY39337.1| DNA-binding response regulator [Cyanobium sp. PCC 7001] Length = 253 Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 44/228 (19%), Positives = 91/228 (39%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++ G + + + D+ ++ Sbjct: 16 ILVVDDEASIRRILETRLSMIGYQVVTASDGMEALECFRESHPDLVVLDVM--MPKLDGY 73 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + +R S VP++ ++ + + + G DD V KP +E+ AR+ + RR++ Sbjct: 74 GVCQELRKESDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRVEK 133 Query: 122 SNNRAETGPI-------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 R+ ++ R E L E +LE L++ G+ ++ +I Sbjct: 134 EQVAGIPNSGVITVGDLRIDTNKRQVYRGDERIRLTGMEFSLLELLVSRSGEPFSRGEIL 193 Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 ++G + V+ VV+ HIS+LR KL + + + + R GY Sbjct: 194 KEVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGYLF 241 >gi|158429258|pdb|2OQR|A Chain A, The Structure Of The Response Regulator Regx3 From Mycobacterium Tuberculosis Length = 230 Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 54/225 (24%), Positives = 101/225 (44%), Gaps = 9/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + D L +G A D+ ++ L G + Sbjct: 8 LIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLML--PGMSGTD 65 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + +RA S VP+I ++ S + + G DD V KP RE++AR+ A+ RR Sbjct: 66 VCKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDD 125 Query: 123 NNRAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 ++ GP+R+ + V G+ LP +E +LEYLM N G+ + + Q+ + Sbjct: 126 DSEMSDGVLESGPVRMDVERHVVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLIDRV 185 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 +G D + ++ H+ +LR K+ + + + R LGY ++ Sbjct: 186 WGA-DYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVRGLGYKLE 229 >gi|158340554|ref|YP_001521548.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] gi|158310795|gb|ABW32409.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] Length = 237 Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 46/230 (20%), Positives = 94/230 (40%), Gaps = 13/230 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++ G + + R D+ ++ Sbjct: 8 ILVVDDEASIRRVLSTRLSKIGYQVYTAADGVEALDVFYDQRPDLIILDVM--MPKLDGY 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + +R S+VP+I ++ + + + G DD V KP +E+ +RV +I RR++ Sbjct: 66 GVCQAVRKASRVPIIMLTALSDVVDRITGLEMGADDYVVKPFSLKELESRVRSILRRMET 125 Query: 122 SNNRAETGPIR---------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + V ++ R L E +LE L + G+ +++++ Sbjct: 126 TKPLPFHHQSNGVIRFGSITVDTNKRQVFKGRSRISLTHMEFSVLELLATHPGEPISRSE 185 Query: 173 IFSAIYGLFDEA-VEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++G EA V+ VV+ HIS LR+KL + + + +GY++ Sbjct: 186 FLHKVWGYSHEANVDTQVVDIHISHLRRKLGDSSGNPKLIHTVHGVGYTL 235 >gi|148543262|ref|YP_001270632.1| two component transcriptional regulator [Lactobacillus reuteri DSM 20016] gi|184152673|ref|YP_001841014.1| two-component response regulator [Lactobacillus reuteri JCM 1112] gi|77745293|gb|ABB02547.1| response regulator [Lactobacillus reuteri] gi|148530296|gb|ABQ82295.1| two component transcriptional regulator, winged helix family [Lactobacillus reuteri DSM 20016] gi|183224017|dbj|BAG24534.1| two-component response regulator [Lactobacillus reuteri JCM 1112] Length = 235 Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 48/228 (21%), Positives = 98/228 (42%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + E + D+ ++ L L Sbjct: 5 ILVVDDEKPISDIIKFNLEKEGYEVVVAYDGEAALEQVEAENPDLIILDLML--PKIDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 E+ + +RA +P+I ++ S + + G DD V KP +RE++ARV A RR Sbjct: 63 EVAKRVRAKHTMPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQAT 122 Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + +N + G + + + +GE L RE +L YL + G+ + + + Sbjct: 123 LKAPAEEENNTDIQIGDLTIHPEAYTVTKRGENINLTHREFELLHYLAQHIGQVINREHL 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++G +D + V+ + +LR+K+ + + ++R +GY + Sbjct: 183 LQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPQWLITRRGVGYYL 229 >gi|218900022|ref|YP_002448433.1| DNA-binding response regulator [Bacillus cereus G9842] gi|228903369|ref|ZP_04067500.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis IBL 4222] gi|228967973|ref|ZP_04128982.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar sotto str. T04001] gi|218540779|gb|ACK93173.1| DNA-binding response regulator [Bacillus cereus G9842] gi|228791697|gb|EEM39290.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar sotto str. T04001] gi|228856330|gb|EEN00859.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis IBL 4222] Length = 232 Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 53/229 (23%), Positives = 85/229 (37%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD A + D +G + E + + D+ ++ Sbjct: 6 ILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIEAQPIDLVVLDIM--MPKMDGY 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IRA +P+I +S S + G DD + KP E++ARV A RR Sbjct: 64 EVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFFT 123 Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 N + + R +V GE L +E IL L ++ K I Sbjct: 124 LNQPKVAESKSALEIGGVVINPERRTVDVYGEQIELTPKEFDILYLLASHPKKVYNVENI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221 F ++ N V HI LRKKL +K + + +GY+ + Sbjct: 184 FQHVWADDYYEGG-NTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTFN 231 >gi|117928802|ref|YP_873353.1| two component transcriptional regulator [Acidothermus cellulolyticus 11B] gi|117649265|gb|ABK53367.1| two component transcriptional regulator, winged helix family [Acidothermus cellulolyticus 11B] Length = 227 Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 43/222 (19%), Positives = 93/222 (41%), Gaps = 7/222 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD V++ +G +E + + + + R DV ++ + G LE Sbjct: 4 LVVDDDPAVRESLRRSLVFNGYDVELADDGQRALAMINMRRPDVVILDV--LMPGLDGLE 61 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118 R +RA P++ ++ ++ + D+G DD + KP E L + Sbjct: 62 TCRRLRAAGDDVPVLMLTAREAVSDRVAGLDAGADDYLVKPFALEELLARLRALVRRSAP 121 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++ + + + R+ L R E +LE M + + + ++QI ++ Sbjct: 122 GPGASQQLRFSDLTLDLATREVWRGSRPIALTRTEFNLLEMFMRHPRQVLRRSQILEEVW 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G +D N +E ++ LR+KL + + + R +GY++ Sbjct: 182 G-YDFPTTANSLEVYVGYLRRKLEAQGEPRLIHTIRGVGYAL 222 >gi|30261401|ref|NP_843778.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47526577|ref|YP_017926.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49184231|ref|YP_027483.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|65318666|ref|ZP_00391625.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bacillus anthracis str. A2012] gi|167634425|ref|ZP_02392746.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|167639277|ref|ZP_02397549.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170686885|ref|ZP_02878105.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|170706300|ref|ZP_02896761.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|177651390|ref|ZP_02934179.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|227815860|ref|YP_002815869.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|229604024|ref|YP_002865817.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|254682541|ref|ZP_05146402.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254733959|ref|ZP_05191673.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254740353|ref|ZP_05198044.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254753741|ref|ZP_05205776.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|254758837|ref|ZP_05210864.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|30255255|gb|AAP25264.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47501725|gb|AAT30401.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49178158|gb|AAT53534.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|167512716|gb|EDR88090.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|167530313|gb|EDR93039.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170128834|gb|EDS97700.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|170669408|gb|EDT20151.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|172082668|gb|EDT67731.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|227002678|gb|ACP12421.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|229268432|gb|ACQ50069.1| DNA-binding response regulator [Bacillus anthracis str. A0248] Length = 223 Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 41/222 (18%), Positives = 85/222 (38%), Gaps = 7/222 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + ++ + G + + + D ++ L Sbjct: 7 LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIM--MPEMDGLS 64 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRLK 120 + + IR S VP+I ++ ++ G DD + KP E+ + Sbjct: 65 VCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTKQ 124 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + GPI + R E GE L +E +L +L + G+ ++ Q+ ++G Sbjct: 125 EQQEEIQFGPILINEKSRKIEADGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG- 183 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D A V++H+ +R KL G + + + +GY + Sbjct: 184 YDYAGSTRTVDTHVKTMRLKLGE--GGNYIQTVWGVGYKFEV 223 >gi|254501265|ref|ZP_05113416.1| phosphate regulon transcriptional regulatory protein PhoB [Labrenzia alexandrii DFL-11] gi|222437336|gb|EEE44015.1| phosphate regulon transcriptional regulatory protein PhoB [Labrenzia alexandrii DFL-11] Length = 236 Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 52/224 (23%), Positives = 93/224 (41%), Gaps = 8/224 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + +G ++E + E + D+ ++ L G +E Sbjct: 10 LIVEDEEPLSLLLRYNLEAEGYAVETCVRGDEAEIRLRETQPDLLLLDWML--PGLSGIE 67 Query: 63 LPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L R +RA P+I ++ + +G DD V KP E++ARV AI RR Sbjct: 68 LCRRLRAREDTERLPVIMLTARGEEAERIRGLSTGADDYVVKPFSVPELMARVRAILRRA 127 Query: 120 KVSNNRAETGPIRV--FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + + L E R+LE+LM G+ ++ Q+ + Sbjct: 128 SPEVVSTMLRSGDIELDRETHRVRRSTKEIHLGPTEFRLLEFLMTAPGRVFSREQLLDGV 187 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +G D V+E V+ H+ +LRK L DP+ + R GY+ + Sbjct: 188 WG-HDVYVDERTVDVHVGRLRKALNKGKAKDPIRTVRGAGYAFN 230 >gi|91225176|ref|ZP_01260398.1| DNA-binding response regulator PhoB [Vibrio alginolyticus 12G01] gi|254228694|ref|ZP_04922118.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio sp. Ex25] gi|262395154|ref|YP_003287008.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio sp. Ex25] gi|269965135|ref|ZP_06179269.1| DNA-binding response regulator PhoB [Vibrio alginolyticus 40B] gi|91190119|gb|EAS76390.1| DNA-binding response regulator PhoB [Vibrio alginolyticus 12G01] gi|151938873|gb|EDN57707.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio sp. Ex25] gi|262338748|gb|ACY52543.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio sp. Ex25] gi|269830121|gb|EEZ84348.1| DNA-binding response regulator PhoB [Vibrio alginolyticus 40B] Length = 229 Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 36/222 (16%), Positives = 92/222 (41%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D A +++ + G + + D+ ++ L G G Sbjct: 5 ILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDTAVTKLAEPFPDLVLLDWMLPGGSGINF 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ + +P++ ++ + + + G DD + KP +E++AR+ A+ RR+ Sbjct: 65 IKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIRRVT 124 Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + + +++ + E ++L + M ++ + ++ Q+ + ++ Sbjct: 125 PTALEDVIDVQGLKLDPVSHRVTANDAPLDMGPTEFKMLHFFMTHQERVYSREQLLNNVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G + VE+ V+ HI +LRK L + + R GY Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALEAAGHDKLIQTVRGAGYRF 225 >gi|118581556|ref|YP_902806.1| two component transcriptional regulator [Pelobacter propionicus DSM 2379] gi|118504266|gb|ABL00749.1| two component transcriptional regulator, winged helix family [Pelobacter propionicus DSM 2379] Length = 228 Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 47/227 (20%), Positives = 92/227 (40%), Gaps = 8/227 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++I+D + + +G + ++ D+ ++ L G +V Sbjct: 5 ILIIEDERDLAELLAFNLEKEGFAPRCAFDGISGLEAARDSKPDLIVLDLMLPGMLGTEV 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R S++P++ ++ + F+ G DD + KP RE+ R+ AI RR Sbjct: 65 CKALRKDTTTSRIPVLMVTAKGDEIDRVVGFELGADDYIVKPFSMRELCLRIRAILRRCD 124 Query: 121 VSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 V G I + + L E ++L YL+ RG+ +++ Q+ Sbjct: 125 VEQPTGSPLLTLGDIVIDRERHRVVSADAETDLTSTEFKLLLYLVERRGRVISRDQLLQD 184 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 ++ D + V++HI++LR KL + + R GY I+ N Sbjct: 185 VWSYHD-VGDTRTVDTHITRLRGKLGAPGEQ--IKTVRGFGYKIEEN 228 >gi|313885587|ref|ZP_07819337.1| transcriptional regulatory protein WalR [Eremococcus coleocola ACS-139-V-Col8] gi|312619317|gb|EFR30756.1| transcriptional regulatory protein WalR [Eremococcus coleocola ACS-139-V-Col8] Length = 234 Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 45/226 (19%), Positives = 90/226 (39%), Gaps = 12/226 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D ++G + E D+ ++ L + L Sbjct: 4 ILVVDDEKPISDIITYTLKNEGYDIVTAFDGEEALEQFEKENPDLVLLDLML--PKKTGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARVA 113 E+ R IR S VP+I ++ S + + G DD V KP +RE + Sbjct: 62 EVCREIRKDSAVPIIMLTAKDSEIDKVVGLELGADDYVTKPFSNRELAARVKASLRRNAL 121 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + ++ G + V + +G+ L RE +L YL + G+ + + + Sbjct: 122 VTSDTSETESSDIVIGDLVVHQEAYIASKRGQEIELTHREFELLHYLAKHIGQVMTREHL 181 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGY 218 ++G +D + V+ I +LR+K+ + + ++R +GY Sbjct: 182 LETVWG-YDYFGDVRTVDVTIRRLREKIEDQPSHPSYIVTRRGVGY 226 >gi|332662093|ref|YP_004444881.1| winged helix family two component transcriptional regulator [Haliscomenobacter hydrossis DSM 1100] gi|332330907|gb|AEE48008.1| two component transcriptional regulator, winged helix family [Haliscomenobacter hydrossis DSM 1100] Length = 227 Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 41/227 (18%), Positives = 96/227 (42%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 +++DD + + +G + +S E + + ++ ++ + G +V Sbjct: 6 ILIVDDEPDILEILQYNLEKEGYQVVTASSGEEALVVAEKEQPNLIVLDIMMPKIDGVEV 65 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAI 115 + R + + ++ + + D G DD + KPI R ++R + Sbjct: 66 CRILRTKPEFDRTAITFLTAREEDYSQIAALDVGGDDYITKPIRPRVFISRIKALLRRSD 125 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + + G + + D + EV L ++E +L L++ GK ++ +IF+ Sbjct: 126 RLPQEEGLDVIKIGGLSIDRDRVSVQKGEEVIELAKKEFELLFLLVSKPGKVFSREEIFN 185 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 ++G D V ++ HI KLR+K+ + D + + + +GY ++ Sbjct: 186 KVWGT-DVIVGNRTIDVHIRKLREKIGD----DYIKTIKGIGYKFEF 227 >gi|304406412|ref|ZP_07388068.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] gi|304344470|gb|EFM10308.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] Length = 227 Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 42/224 (18%), Positives = 89/224 (39%), Gaps = 6/224 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ +G + E + R D++ ++ Sbjct: 4 ILVVDDDPNIRELSSVFLRREGYEILQATDGEDALRQLEAVRPDMAIMDIM--MPRMDGW 61 Query: 62 ELPRIIRAHS--QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L +R +PL+ ++ + F+ G DD + KP E++ RV A+ +R Sbjct: 62 ALCEALRDSYGQDMPLLMLTAKGETSHKVRAFELGADDYLVKPFDPLELVVRVKALLKRY 121 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGE-VFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 K+ + S E LP +E +L + + K A+ Q+ ++ Sbjct: 122 KIVASHTVEVGCISLSKTDYDVTMPEGRVKLPPKEFELLFKMASYPNKTFAREQLIEQLW 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 G+ D +E V+ H+ +LR++ + + + R LGY ++ Sbjct: 182 GV-DYEGDERTVDVHVKRLRERFPEQTSGFRIVTIRGLGYRLEV 224 >gi|299143501|ref|ZP_07036581.1| DNA-binding response regulator VicR [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298517986|gb|EFI41725.1| DNA-binding response regulator VicR [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 230 Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 45/227 (19%), Positives = 93/227 (40%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A + + DG +E E + D+ ++ Sbjct: 5 ILVVDDEAAIAEIIEFNLKRDGFEVELAFDGEQCLEKVKDSNFDLIILDVM--MPKIDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R +R +P+I ++ + + G DD V KP RE+ ARV AI RR Sbjct: 63 TVLRELRKTRHIPIIMLTAKEDEVDKILGLELGADDYVVKPFSMRELTARVKAILRRYDF 122 Query: 122 SNNRAETGPI-------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + + + +G+V L RE +L+YL ++ G+ ++ ++ Sbjct: 123 ETETPNSESKVIEAGDLIIDLTKYEIKKKGKVIDLTLREYELLKYLASSPGQVFSREELL 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++ ++ + V+ + +LR+K+ + F + +KR +GY Sbjct: 183 DQVWD-YEYYGDIRTVDVTVRRLREKIEDKDKDFKYIMTKRGVGYYF 228 >gi|291299360|ref|YP_003510638.1| winged helix family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290568580|gb|ADD41545.1| two component transcriptional regulator, winged helix family [Stackebrandtia nassauensis DSM 44728] Length = 229 Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 43/223 (19%), Positives = 84/223 (37%), Gaps = 9/223 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + + +G + E R DV ++ L G ++ Sbjct: 6 LVVDDDPALAEMLGIVLRTEGFTPVFVTDGEQALEAFHEHRPDVVLLDLML--PGMSGID 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + IR S VP++ ++ + +SG DD V KP +E++ARV A RR Sbjct: 64 VCKQIRLESGVPIVMLTAKSDTVDVVLGLESGADDYVIKPFKPKELVARVRARLRRGDDV 123 Query: 123 NNRAETGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + G L E +L L + + + + Sbjct: 124 APERLQIGRPGLQVSIDVPAHSATLNGVEVKLTPLEFDLLVALARKPRQVFTREVLLEQV 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219 +G + A + +V H+ +LR K+ + + + R +GY Sbjct: 184 WG-YRHAADTRLVNVHVQRLRAKIEPDPENPQLIQTVRGVGYK 225 >gi|254821074|ref|ZP_05226075.1| DNA-binding response regulator [Mycobacterium intracellulare ATCC 13950] Length = 227 Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 54/225 (24%), Positives = 101/225 (44%), Gaps = 9/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + D L +G A D+ ++ L G + Sbjct: 5 LIVEDEESLADPLAFLLRKEGFEATVVTDGSAALAEFDRAGADIVLLDLML--PGMSGTD 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + +RA S VP+I ++ S + + G DD V KP RE++AR+ A+ RR Sbjct: 63 VCKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGED 122 Query: 123 NNRAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 ++ GP+R+ + V G+ LP +E +LEYLM N G+ + + Q+ + Sbjct: 123 DSEISDGVLESGPVRMDVERHVVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLIDRV 182 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 +G D + ++ H+ +LR K+ + + + R LGY ++ Sbjct: 183 WGA-DYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVRGLGYKLE 226 >gi|332800512|ref|YP_004462011.1| winged helix family two component transcriptional regulator [Tepidanaerobacter sp. Re1] gi|332698247|gb|AEE92704.1| two component transcriptional regulator, winged helix family [Tepidanaerobacter sp. Re1] Length = 229 Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 42/225 (18%), Positives = 92/225 (40%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G ++ + + D+ ++ L + Sbjct: 5 ILVVDDEKPIVDILRYNLSKEGYNVLAAYDGDEAINIALKEDPDLILLDIML--PKQDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + +R P+I ++ + + G DD + KP RE++ARV A RR+ + Sbjct: 63 SVCKKLREKITSPIIMLTARGEEVDKVLGLELGADDYITKPFSMRELMARVKANLRRIAL 122 Query: 122 SNNRAETGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 S E IR + +G+ L RE +++YL G+ + ++ Sbjct: 123 SEPGGEEEIIRLGDLELDLKSYVVRKRGKPLDLTFREYELIKYLSTQAGQVFTREKLLEE 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 ++G ++ + V+ + +LR+K+ + + +KR +GY Sbjct: 183 VWG-YEYYGDIRTVDVTVRRLREKVEDDPANPTYIITKRGVGYYF 226 >gi|229012417|ref|ZP_04169592.1| Two component transcriptional regulator, winged helix [Bacillus mycoides DSM 2048] gi|229170815|ref|ZP_04298429.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH621] gi|228612653|gb|EEK69862.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH621] gi|228748776|gb|EEL98626.1| Two component transcriptional regulator, winged helix [Bacillus mycoides DSM 2048] Length = 237 Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 42/231 (18%), Positives = 90/231 (38%), Gaps = 12/231 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D +++ + + + + L + + D+ ++ + Sbjct: 5 ILIVEDEENIREVCKRYLEREEYEVYTAVNGKEGWDLFLTHQPDLIILDLM--MPKKDGW 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL IR S VP+I ++ + + G DD + KP RE++ RV I RR Sbjct: 63 ELCEEIRQQSNVPIIMLTAKGEERDRILGLTMGADDYLTKPFSPRELVLRVQIILRRGSH 122 Query: 122 SNNR--------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + E ++++ R V + L +E +L + + + +++Q+ Sbjct: 123 VQIQAKESLLEVIEFPDLKIYPKTRYVLVCNKEVELTVKEFEVLYLMAKHPKQVFSRSQL 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223 I+ F N V +S+LR+KL + + +GY + N Sbjct: 183 LELIWD-FGHEGASNTVTVLVSRLREKLEKHTIKNRWIHTVWGIGYRFEPN 232 >gi|212716668|ref|ZP_03324796.1| hypothetical protein BIFCAT_01601 [Bifidobacterium catenulatum DSM 16992] gi|212660372|gb|EEB20947.1| hypothetical protein BIFCAT_01601 [Bifidobacterium catenulatum DSM 16992] Length = 234 Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 50/231 (21%), Positives = 95/231 (41%), Gaps = 13/231 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++ + +G + + E L + D+ ++ L G Sbjct: 4 ILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGGIDLVLLDLML--PGLDGT 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112 L R IR S+VP+I ++ + + + G DD + KP RE ++ Sbjct: 62 ALCRRIREQSRVPIIMLTAKSAEIDKVVGLEIGADDYITKPYSFRELLARVRAVLRRNQM 121 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 A + G I + + V+GE P +E +LEYLM N+G+ + + Q Sbjct: 122 VADAAESSDDDIPLICGDISMKIGQHEVMVRGENVFFPLKEFELLEYLMQNKGRVMTRHQ 181 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDW 222 + I+G D + ++ H+ ++R K+ + + R LGY ID Sbjct: 182 LIDRIWG-SDYVGDTKTLDVHVKRVRSKIEEDPAHPKYLTTVRGLGYKIDV 231 >gi|153834652|ref|ZP_01987319.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio harveyi HY01] gi|156973339|ref|YP_001444246.1| response regulator [Vibrio harveyi ATCC BAA-1116] gi|269962450|ref|ZP_06176800.1| DNA-binding response regulator PhoB [Vibrio harveyi 1DA3] gi|148868964|gb|EDL68018.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio harveyi HY01] gi|156524933|gb|ABU70019.1| hypothetical protein VIBHAR_01026 [Vibrio harveyi ATCC BAA-1116] gi|269832946|gb|EEZ87055.1| DNA-binding response regulator PhoB [Vibrio harveyi 1DA3] Length = 229 Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 37/222 (16%), Positives = 93/222 (41%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D A +++ + G + + D+ ++ L G G Sbjct: 5 ILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSAVTKLAEPFPDLVLLDWMLPGGSGINF 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ + +P++ ++ + + + G DD + KP +E++AR+ A+ RR+ Sbjct: 65 IKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIRRVT 124 Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + + +++ E + E ++L + M ++ + ++ Q+ + ++ Sbjct: 125 PTALEDVIDVQGLKLDPVSHRVTANDEAVDMGPTEFKMLHFFMTHQERVYSREQLLNNVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G + VE+ V+ HI +LRK L + + R GY Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALEAAGHDKLIQTVRGAGYRF 225 >gi|114327579|ref|YP_744736.1| phosphate regulon transcriptional regulatory protein phoB [Granulibacter bethesdensis CGDNIH1] gi|114315753|gb|ABI61813.1| phosphate regulon transcriptional regulatory protein phoB [Granulibacter bethesdensis CGDNIH1] Length = 249 Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 44/224 (19%), Positives = 91/224 (40%), Gaps = 8/224 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D A + G +E + + S + D+ ++ L G +E Sbjct: 25 LIVEDEAALATMLRYNLEKQGFRVEEASDGQEALHRLSEVQPDLVLLDWML--PGLSGIE 82 Query: 63 LPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYR 117 + R IR P+I ++ Q + ++G DD + KP + + + AR+ A Sbjct: 83 VCRQIRRKPGTRDLPIIMVTARVEDQDAVRALNTGADDYITKPFNMQALQARIRALLRRA 142 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + I + L E R++E+ + + + ++ ++ ++ Sbjct: 143 SPVTAKGMLTFHDITMDLATHRVHRNNRPIHLGPTEFRLMEFFLQHPRRVFSREELLDSV 202 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +G D VE V+ HI +LRK + + D V + R GY++D Sbjct: 203 WGT-DIHVEPRTVDVHIRRLRKAVNGEGEVDLVRTVRAAGYALD 245 >gi|310641768|ref|YP_003946526.1| alkaline phosphatase synthesis transcriptional regulatory proteinphop [Paenibacillus polymyxa SC2] gi|309246718|gb|ADO56285.1| Alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Paenibacillus polymyxa SC2] Length = 224 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 47/220 (21%), Positives = 96/220 (43%), Gaps = 4/220 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD +++ +G+ + L + D+ ++ G E Sbjct: 5 LVVDDDPHIRELVGHFLRLEGLEVVEAVDGLDAMRLFDETKVDLLVLDIM--MPGMDGWE 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R +R + +PL+ ++ + F G DD + KP ++ARV A+ +R ++ Sbjct: 63 LCRKLREQTDLPLLMLTAKGETSQIVKGFALGTDDYLVKPFDPMVLVARVKALLKRYRIM 122 Query: 123 NNRAETGPIRVFS-DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 +++ T V D + + + LPR+E +L L + GK + + I+G + Sbjct: 123 ASKSVTIGDLVLRSDTFECQAGEQGITLPRKEFELLFKLASYPGKTFTRDHLIEQIWG-Y 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D +E V+ HI +LR++ + + R LGY ++ Sbjct: 182 DYEGDERTVDVHIKRLRERFPEATQSFAIRTIRGLGYRLE 221 >gi|229059658|ref|ZP_04197036.1| DNA-binding response regulator [Bacillus cereus AH603] gi|229166864|ref|ZP_04294611.1| DNA-binding response regulator [Bacillus cereus AH621] gi|228616492|gb|EEK73570.1| DNA-binding response regulator [Bacillus cereus AH621] gi|228719671|gb|EEL71270.1| DNA-binding response regulator [Bacillus cereus AH603] Length = 225 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 39/222 (17%), Positives = 95/222 (42%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ +G + D++ ++ Sbjct: 5 ILIVDDDPHIRELVSVFLEREGFQTYEAVDGLDALRKIEEVKVDMAILDIM--MPNMDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 +L +R + +P++ ++ + F G DD + KP E++ RV A+ +R ++ Sbjct: 63 DLCYELRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPLELVVRVKALLKRYQI 122 Query: 122 SNNRAETGPIR-VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + +++ + + V + LP +E +L L + G+ ++ Q+ ++G Sbjct: 123 TVSQSIQVGNVLLNRKTFEVNVGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG- 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D E ++ HI++LR+K + +L + + R LGY ++ Sbjct: 182 YDFEGNERTLDVHINRLREKFQEELSKFSIRTIRGLGYRLEV 223 >gi|118479970|ref|YP_897121.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|196044002|ref|ZP_03111239.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|225866850|ref|YP_002752228.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|118419195|gb|ABK87614.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|196025338|gb|EDX64008.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|225785931|gb|ACO26148.1| DNA-binding response regulator [Bacillus cereus 03BB102] Length = 232 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 53/229 (23%), Positives = 85/229 (37%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD A + D +G + E + + D+ ++ Sbjct: 6 ILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIM--MPKMDGY 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IRA +P+I +S S + G DD + KP E++ARV A RR Sbjct: 64 EVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 123 Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 N + + R +V GE L +E IL L ++ K I Sbjct: 124 LNQPKVAESKSALEVGGVVIDPERRTVDVYGEQIELTPKEFDILYLLASHPKKVYNVENI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221 F ++ N V HI LRKKL +K + + +GY+ + Sbjct: 184 FQQVWADDYFEGG-NTVMVHIRTLRKKLGEDKRKNKLIKTVWGVGYTFN 231 >gi|30260460|ref|NP_842837.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47525548|ref|YP_016897.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49183302|ref|YP_026554.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|165871408|ref|ZP_02216056.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167634255|ref|ZP_02392577.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|167640089|ref|ZP_02398356.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170689714|ref|ZP_02880889.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|170709461|ref|ZP_02899865.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|190567317|ref|ZP_03020231.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|196036931|ref|ZP_03104313.1| DNA-binding response regulator [Bacillus cereus W] gi|218901477|ref|YP_002449311.1| DNA-binding response regulator [Bacillus cereus AH820] gi|227812952|ref|YP_002812961.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228931776|ref|ZP_04094674.1| hypothetical protein bthur0009_2630 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228944083|ref|ZP_04106463.1| hypothetical protein bthur0007_2600 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229602359|ref|YP_002864905.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|254686671|ref|ZP_05150529.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254724747|ref|ZP_05186530.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254736996|ref|ZP_05194701.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254744175|ref|ZP_05201857.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254756050|ref|ZP_05208079.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|254761867|ref|ZP_05213716.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|30253781|gb|AAP24323.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47500696|gb|AAT29372.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49177229|gb|AAT52605.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|164712892|gb|EDR18421.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167511900|gb|EDR87279.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|167530569|gb|EDR93284.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170125628|gb|EDS94551.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|170666328|gb|EDT17116.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|190561444|gb|EDV15415.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|195990454|gb|EDX54440.1| DNA-binding response regulator [Bacillus cereus W] gi|218535735|gb|ACK88133.1| DNA-binding response regulator [Bacillus cereus AH820] gi|227007477|gb|ACP17220.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228815596|gb|EEM61837.1| hypothetical protein bthur0007_2600 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228827890|gb|EEM73626.1| hypothetical protein bthur0009_2630 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|229266767|gb|ACQ48404.1| DNA-binding response regulator [Bacillus anthracis str. A0248] Length = 237 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 43/228 (18%), Positives = 88/228 (38%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD +++ + ++ E L + + ++ + Sbjct: 6 ILIADDDKEIRNLLKIYLERELYMVDTAIDGEVALQLFNQNNYSIVILDLM--MPKVDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R + VP++ ++ + G DD + KP E++ARV A+ RR V Sbjct: 64 EVCRKLRDKTNVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKALIRRFLV 123 Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + + E L +E +L++ +N G+ KTQ+ Sbjct: 124 LGSNINVQEKTTLAFKGLTINLNTYTVHTNKEEISLTGKELELLKFFTSNPGQVFTKTQL 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 F ++ + ++N V HI KLRKK+ + + + +GY Sbjct: 184 FRNVWD-DNYIEDDNTVMVHIRKLRKKIEIDPSNPKFIQTVWGIGYKF 230 >gi|300088402|ref|YP_003758924.1| winged helix family two component transcriptional regulator [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299528135|gb|ADJ26603.1| two component transcriptional regulator, winged helix family [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 231 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 50/231 (21%), Positives = 97/231 (41%), Gaps = 13/231 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++D + D +G S+ L + D+ + G Sbjct: 4 IAVVEDDRNLADLLKYNLSREGFSVVTATDGSAGLALIRREKPDIIISDVM--MPGMDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL R +R + P++ ++ + + G DD ++KP RE++ARV A+ RRL++ Sbjct: 62 ELTRTLRTETTAPVLLLTARSEEIDKVLGLEMGADDYLSKPFSMRELVARVKAMLRRLEM 121 Query: 122 SNNRAETGPI---------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + P + ++ V G+ L RE +L YLM NRG+ ++ Sbjct: 122 TAGTEAGIPAGLTLRLGGLELDAERHRLTVGGQEVELSPREFDLLAYLMNNRGRVFSRQS 181 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 + ++G +D +E V+ H+ LR+K+ + + + R +GY + Sbjct: 182 LVDRVWG-YDYPGDERTVDVHVRWLRQKIETDPARPHHLVTVRGVGYKFEE 231 >gi|126658619|ref|ZP_01729765.1| two-component response regulator [Cyanothece sp. CCY0110] gi|126620056|gb|EAZ90779.1| two-component response regulator [Cyanothece sp. CCY0110] Length = 243 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 90/228 (39%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++ G + E + A D+ ++ Sbjct: 8 ILVVDDEASIRRILETRLSMIGYDVVTAADGEEALDIFHEAIPDLVVLDVM--MPKLDGY 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAA 114 + + +R S +P+I ++ + + + G DD V KP +E+ RV Sbjct: 66 GVCQELRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVEK 125 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 S+ I++ ++ R E L E +LE L++ G+ ++++I Sbjct: 126 NGAPGIPSSGVISIASIKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEIL 185 Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 ++G + V+ VV+ HIS+LR KL + + + + R GY Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLF 233 >gi|118477412|ref|YP_894563.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|225863917|ref|YP_002749295.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|300117557|ref|ZP_07055344.1| DNA-binding response regulator [Bacillus cereus SJ1] gi|118416637|gb|ABK85056.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|225786611|gb|ACO26828.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|298725092|gb|EFI65747.1| DNA-binding response regulator [Bacillus cereus SJ1] Length = 254 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 36/222 (16%), Positives = 94/222 (42%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ +G + + D+ ++ Sbjct: 34 ILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINEVKVDMVILDIM--MPNMDGF 91 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ +R + +P++ ++ + F G DD + KP E++ RV A+ +R ++ Sbjct: 92 DVCFELRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 151 Query: 122 SNNRAETGPIR-VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + +++ + + + + LP +E +L L + G+ ++ Q+ ++G Sbjct: 152 TVSQSIQVGTVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG- 210 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D E ++ HI++LR+K + + + + R LGY ++ Sbjct: 211 YDFEGNERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLEV 252 >gi|77165864|ref|YP_344389.1| phosphate regulon transcriptional regulatory protein phoB [Nitrosococcus oceani ATCC 19707] gi|254434533|ref|ZP_05048041.1| phosphate regulon transcriptional regulatory protein PhoB [Nitrosococcus oceani AFC27] gi|76884178|gb|ABA58859.1| two component transcriptional regulator, winged helix family [Nitrosococcus oceani ATCC 19707] gi|207090866|gb|EDZ68137.1| phosphate regulon transcriptional regulatory protein PhoB [Nitrosococcus oceani AFC27] Length = 229 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 42/222 (18%), Positives = 91/222 (40%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +++DD A +++ +G + E + + D+ ++ L G G + Sbjct: 5 ILVVDDEAAIREMLGFALTQEGYYYQAAADGEQAWQRINESHPDLILLDWMLPGISGVDL 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118 + + ++P+I ++ + + + G DD + KP E++AR+ A Sbjct: 65 ARRLKREPSTRELPVIMLTARDEEEDKVRGLNVGADDYITKPFSPTELIARIKAVLRRSA 124 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 S E +++ V+G + E R+L + + + + ++ Q+ ++ Sbjct: 125 PLASGEVIEFDGLKLDPGSHRLSVRGTPLEMGPTEFRLLHFFLTHLERVYSRGQLIDYVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G + VEE V+ HI +LRK L + + R +GY Sbjct: 185 G-DNVYVEERTVDVHIRRLRKSLEPSGHDGFIQTVRGVGYRF 225 >gi|229177365|ref|ZP_04304748.1| Two component transcriptional regulator, winged helix [Bacillus cereus 172560W] gi|228606088|gb|EEK63526.1| Two component transcriptional regulator, winged helix [Bacillus cereus 172560W] Length = 232 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 52/228 (22%), Positives = 84/228 (36%), Gaps = 10/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD + + +G + E + S D+ ++ Sbjct: 6 ILIADDDLKIAELIEIHLKKEGYQVVKATDGEAAIEIIQSQAIDLVVLDIM--MPKMDGY 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR +P+I +S S + G DD + KP E++ARV A RR Sbjct: 64 EVTRQIRTKQNMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLA 123 Query: 122 SNNRAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N + + + R V GE L +E IL L ++ K + IF Sbjct: 124 LNQPKVEETSVLEAGGVVIDFEKRTVHVYGERIDLTPKEFDILYLLASHPKKVYSLENIF 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221 I+ N V HI LRKKL +K + + +GY+ + Sbjct: 184 QQIWTNDYYDDNNNTVTVHIRTLRKKLGEDKRKNKLIKTIWGVGYTFN 231 >gi|223043280|ref|ZP_03613327.1| transcriptional regulatory protein ResD [Staphylococcus capitis SK14] gi|222443491|gb|EEE49589.1| transcriptional regulatory protein ResD [Staphylococcus capitis SK14] Length = 241 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 37/232 (15%), Positives = 84/232 (36%), Gaps = 14/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ + + + + L ++ L + Sbjct: 5 ILIVDDEDRIRRLLKLYLERESFEIHEASDGKEAYQLAMDNNYACILLDLML--PEMDGI 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112 E+ +R H P+I ++ ++ F+SG DD + KP RE + Sbjct: 63 EVASKLREHKDTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQS 122 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 A + + + E + + +D E L +E +L YL K + Q Sbjct: 123 ANSEQSEPHARDIIEFNHLVIDNDAHRVLADNEQVNLTPKEYELLIYLAKTPNKVFDREQ 182 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSIDW 222 + ++ ++ + V++H+ +LR+KL + + + +GY + Sbjct: 183 LLKEVW-HYEFYGDLRTVDTHVKRLREKLNRVSNDAAQMIQTVWGVGYKFEV 233 >gi|229065726|ref|ZP_04200950.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH603] gi|228715544|gb|EEL67345.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH603] Length = 237 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 43/231 (18%), Positives = 88/231 (38%), Gaps = 12/231 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D +++ +G + + + + D+ ++ + Sbjct: 5 ILIVEDEENIREVCKRYLEREGYEVYTAMNGMEGWDVFHQYQPDLIILDLM--MPKKDGW 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL IR S VP+I ++ + + G DD V KP RE++ RV I RR Sbjct: 63 ELCEEIRQQSNVPIIMLTAKGEERDRILGLTMGADDYVTKPFSPRELVLRVQIILRRGNQ 122 Query: 122 SNNR--------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + E ++++ R V L +E +L + + + +++Q+ Sbjct: 123 IPIQAKESLSEVIEFPDLKIYPKTRCVLVCENKVELTVKEFEVLYVMAQHPKQVFSRSQL 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223 I+ F+ N V +S+LR KL + + +GY + N Sbjct: 183 LELIWD-FEHEGGTNTVTVLVSRLRDKLEKHTIKNRWIHTVWGIGYRFEPN 232 >gi|56750974|ref|YP_171675.1| two-component response regulator [Synechococcus elongatus PCC 6301] gi|81299367|ref|YP_399575.1| two component transcriptional regulator [Synechococcus elongatus PCC 7942] gi|56685933|dbj|BAD79155.1| two-component response regulator [Synechococcus elongatus PCC 6301] gi|81168248|gb|ABB56588.1| two component transcriptional regulator, winged helix family [Synechococcus elongatus PCC 7942] Length = 237 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 40/225 (17%), Positives = 84/225 (37%), Gaps = 8/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + V+ + G +E D+ ++ L Sbjct: 6 ILVVDDDSAVRTLLVRFLSRQGYQVEAAIDGSSALAQFERFSPDLLILDVNL--PDTNGY 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYR 117 +L I++ + V +I ++ L F G DD + KP + AR+ Sbjct: 64 QLCEIVQKRTGVYVILLTSRDDEADILTGFAKGADDYITKPFSLMSVGARIAAILRRQRH 123 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 S +++ R+ G+ L E +L +L + + + ++ + Sbjct: 124 IETASQPALHYEQLQIDPARREVSFAGQPILLTALEFDLLHFLATHPDRVWRRNELIQEV 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221 + +D ++ VV+ HI ++RKKL P+ + R +GY + Sbjct: 184 W-EYDYVGDQRVVDVHIGQIRKKLEVNPELACPIQTVRGVGYKFE 227 >gi|77463153|ref|YP_352657.1| phosphate regulon transcriptional regulator, PhoR [Rhodobacter sphaeroides 2.4.1] gi|126462025|ref|YP_001043139.1| two component transcriptional regulator [Rhodobacter sphaeroides ATCC 17029] gi|221639010|ref|YP_002525272.1| winged helix family two component transcriptional regulator [Rhodobacter sphaeroides KD131] gi|332558027|ref|ZP_08412349.1| Two component transcriptional regulator, winged helix family protein [Rhodobacter sphaeroides WS8N] gi|77387571|gb|ABA78756.1| Phosphate regulon transcriptional regulator, PhoR [Rhodobacter sphaeroides 2.4.1] gi|126103689|gb|ABN76367.1| two component transcriptional regulator, winged helix family [Rhodobacter sphaeroides ATCC 17029] gi|221159791|gb|ACM00771.1| Two component transcriptional regulator, winged helix family [Rhodobacter sphaeroides KD131] gi|332275739|gb|EGJ21054.1| Two component transcriptional regulator, winged helix family protein [Rhodobacter sphaeroides WS8N] Length = 230 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 53/221 (23%), Positives = 95/221 (42%), Gaps = 4/221 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61 +L++D ++ +G + + + L A DV ++ L G +V Sbjct: 10 LLVEDEPAQREVLSYNLESEGFRVVQAGNGDEALMLVEEAGPDVIVLDWMLPSVSGIEVC 69 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + VP+I +S + ++G DD V KP E++ARV + RR + Sbjct: 70 RQLKSRPSTRSVPIIMLSARSEEVDRVRGLETGADDYVVKPYSVVELMARVRSQLRRARP 129 Query: 122 SNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S+ E IR+ + ++ L E R+L M G+ ++ Q+ ++G Sbjct: 130 SSVGLTLEFEDIRLDPETHKVHRGAQLLKLGPTEFRLLSTFMEKPGRVWSREQLLDRVWG 189 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D V+ V+ H+ +LRK L G DPV + R GY++ Sbjct: 190 R-DIYVDSRTVDVHVGRLRKALCLHGGEDPVRTVRGAGYAL 229 >gi|317129907|ref|YP_004096189.1| two component transcriptional regulator, winged helix family [Bacillus cellulosilyticus DSM 2522] gi|315474855|gb|ADU31458.1| two component transcriptional regulator, winged helix family [Bacillus cellulosilyticus DSM 2522] Length = 238 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 40/232 (17%), Positives = 92/232 (39%), Gaps = 14/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + G + + + D ++ L L Sbjct: 5 ILVVDDEESIVTLLQFNLEQGGFQVSTAMDGQTALDKALNESFDFIVLDLML--PEMDGL 62 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILAR 111 E+ + +R + + P++ ++ + + G DD + KP RE + Sbjct: 63 EVCKQLRQNKIMTPILMLTAKDDEFDKVLGLELGADDYLTKPFSPREVVARVRAILRRTK 122 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 A + + G + ++SD + ++G L +E +L YL ++G+ + + Sbjct: 123 AAKRSEKDDNEKEKIVIGDVEIYSDNYEVFLKGNQLELTPKEFELLLYLANHKGRVMTRD 182 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDW 222 Q+ +A++ ++ + +V+ HIS LR+K+ + + R LGY ++ Sbjct: 183 QLLNAVW-NYEFVGDTRIVDVHISHLREKIEPNTKKPIYIKTIRGLGYKLEV 233 >gi|225567872|ref|ZP_03776897.1| hypothetical protein CLOHYLEM_03945 [Clostridium hylemonae DSM 15053] gi|225163350|gb|EEG75969.1| hypothetical protein CLOHYLEM_03945 [Clostridium hylemonae DSM 15053] Length = 229 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 42/225 (18%), Positives = 92/225 (40%), Gaps = 10/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD L+ G DG+ ++ E L D+ ++ L + Sbjct: 6 LVVDDEKLIVKGIRFSLEQDGMDVDCAYDGEEALKLSRENAYDMILLDVML--PKYDGFQ 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH------HREILARVAAIY 116 + + IR S VP++ ++ + + G DD + KP + + + R + Sbjct: 64 VCQQIREFSDVPVVMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRTSKR 123 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 V++ +++ + R ++ + L +E +LE L N K ++ + + Sbjct: 124 DSKTVNDKVIIKREMKIDCESRRVFIEEKEINLTAKEFDLLELLAMNPNKVYSRENLLNI 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++G ++ + V+ HI +LR+K+ N V +K +GY Sbjct: 184 VWG-YEYPGDARTVDVHIRRLREKIEKNPSDPKYVYTKWGVGYYF 227 >gi|322376761|ref|ZP_08051254.1| DNA-binding response regulator VicR [Streptococcus sp. M334] gi|321282568|gb|EFX59575.1| DNA-binding response regulator VicR [Streptococcus sp. M334] Length = 234 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 44/233 (18%), Positives = 94/233 (40%), Gaps = 14/233 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + + + + D+ ++ L L Sbjct: 4 ILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILDLML--PEIDGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL----------AR 111 E+ + IR S VP+I +S S + + G DD V KP +RE+ Sbjct: 62 EVAKTIRKTSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRSHP 121 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + + + G + + + + GE L RE +L +L ++ G+ + + Sbjct: 122 IPVDEQEADSKPQPIQIGDLEIVPEAYVAKKYGEELDLTHREFELLYHLASHIGQVITRE 181 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223 + ++G +D + V+ I +LR+K+ + + + ++R +GY + N Sbjct: 182 HLLETVWG-YDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 233 >gi|228989445|ref|ZP_04149432.1| hypothetical protein bpmyx0001_2190 [Bacillus pseudomycoides DSM 12442] gi|228770293|gb|EEM18870.1| hypothetical protein bpmyx0001_2190 [Bacillus pseudomycoides DSM 12442] Length = 237 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 42/232 (18%), Positives = 94/232 (40%), Gaps = 14/232 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++ DD ++D + +++ + E L + + ++ ++ +E Sbjct: 7 LIADDEKEIRDLLKKYLERELYTVDIAINGEEALHLFNQNKYNLIILDLM--MPKVDGIE 64 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119 + R +R + +P++ ++ + G DD + KP E++AR+ A+ RR Sbjct: 65 VCRRLRNKTNIPILMLTAKDQEVDKILGLSIGADDYITKPFSINEVVARIKALMRRFLVL 124 Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + + V G+ L +E +L++ +N + KTQ+F Sbjct: 125 GSNASVQEKTLLTFKGLTIDVNKYIVNVDGKEISLTGKELELLKFFASNPEQVFTKTQLF 184 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI--DWN 223 ++ + ++N V HI KLRKK+ + + + +GY + N Sbjct: 185 RNVWD-SNYIEDDNTVMVHIRKLRKKIEVDPSNPKLIQTVWGIGYKFVGEKN 235 >gi|152976930|ref|YP_001376447.1| two component transcriptional regulator [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152025682|gb|ABS23452.1| two component transcriptional regulator, winged helix family [Bacillus cytotoxicus NVH 391-98] Length = 230 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 43/228 (18%), Positives = 89/228 (39%), Gaps = 10/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D +++ +G + + E D+ ++ L Sbjct: 5 ILLIEDDISIQEMVEKYLSKEGFQVTFASDGEEGVAKFFHGSFDLIILDIM--MPKLDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115 E+ RIIR S VP++ +S + G DD + KP E+ R Sbjct: 63 EVVRIIREKSAVPILMMSAKDTDIDKAVGLGLGADDYICKPFSMIELAARAKASIRRFTK 122 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 Y + E G +++ + + L +E IL+ N+ + K QI++ Sbjct: 123 YSATEQKEEMIEIGDLKIDPINFTVYKKEKQLKLTLKEFEILKLFARNQNRVFTKAQIYN 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 I+ + ++NV+ H+ +LR+K+ + + + + +GY ++ Sbjct: 183 LIWNE-EYYGDDNVINVHMRRLREKIETDPSNPEYIKTLWGIGYKLEV 229 >gi|260771433|ref|ZP_05880358.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio furnissii CIP 102972] gi|260613559|gb|EEX38753.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio furnissii CIP 102972] Length = 229 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 36/222 (16%), Positives = 92/222 (41%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D A +++ + G + + D+ ++ L G G Sbjct: 5 ILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDTAVNKLAEPFPDLVLLDWMLPGGSGINF 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ + +P++ ++ + + + G DD + KP +E++AR+ A+ RR+ Sbjct: 65 IKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIRRVT 124 Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + + +++ + E ++L + M ++ + ++ Q+ + ++ Sbjct: 125 PTALEDVIDVQGLKLDPVSHRVTANDAPLDMGPTEFKMLHFFMTHQERVYSREQLLNNVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G + VE+ V+ HI +LRK L + + R GY Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALEEAGHDKLIQTVRGAGYRF 225 >gi|229193134|ref|ZP_04320089.1| Two component transcriptional regulator, winged helix [Bacillus cereus ATCC 10876] gi|228590398|gb|EEK48262.1| Two component transcriptional regulator, winged helix [Bacillus cereus ATCC 10876] Length = 232 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 53/229 (23%), Positives = 84/229 (36%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD A + D +G + E + + D+ ++ Sbjct: 6 ILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIETQPIDLVVLDIM--MPKMDGY 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IRA +P+I +S S + G DD + KP E++ARV A RR Sbjct: 64 EVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 123 Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 N + + R V GE L +E IL L ++ K I Sbjct: 124 LNQPKVAENKSALEIGGVIIDPERRTVNVYGEQIELTPKEFDILYLLASHPKKVYNVENI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221 F ++ N V HI LRKKL +K + + +GY+ + Sbjct: 184 FQQVWADDYYEGG-NTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTFN 231 >gi|168184947|ref|ZP_02619611.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|237795402|ref|YP_002862954.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] gi|182672001|gb|EDT83962.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|229263740|gb|ACQ54773.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] Length = 221 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 96/224 (42%), Gaps = 10/224 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++ + + G +E + D+ ++ L Sbjct: 5 ILVVEDDFDIQTIISEVLKESGYLVEEATDGLMAVEMFREGNFDLIILDVML--PKIDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 + IIR S VP+I ++ + + F+ VDD + KP ++ RV Sbjct: 63 VVCEIIRKESSVPIIMLTALGEEEDEMRGFELKVDDYITKPFSINLLIKRVEAVLRRANG 122 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 L+ +N+ I ++ V + L +E +ILE L++N G+ ++ + + I+ Sbjct: 123 LEENNSTLTFEEITIYLSNYKTLVNNKEIELTYKEFQILEILISNVGRVFSRESLLNQIW 182 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 G +D + V+++HI LR+KL D + + R +GY I+ Sbjct: 183 G-YDYFGDTRVIDTHIKNLRQKL----SIDYIKTIRGVGYKIEK 221 >gi|300933784|ref|ZP_07149040.1| two-component system response regulator TcsR8 [Corynebacterium resistens DSM 45100] Length = 230 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 49/228 (21%), Positives = 94/228 (41%), Gaps = 12/228 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + + L +G + ++ D+ ++ L G E Sbjct: 5 LIVEDEESLAEPLAFLLKKEGFEVHLAADGPTALDTFAAQDIDIVLLDLML--PGMSGTE 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA--------A 114 + R +R S VP+I ++ S + + G DD V KP RE++AR+ Sbjct: 63 VCRQLRQTSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGET 122 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + + + V GE P+P +E +LEYLM N G+ + + Q+ Sbjct: 123 EHVEEADEGQILREDRVMMDVERHIVTVDGEPVPMPLKEFDLLEYLMRNSGRVLTRGQLI 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221 ++G+ D + ++ HI +LR K+ + + R LGY + Sbjct: 183 DRVWGV-DYVGDTKTLDVHIKRLRSKIERHPSRPQLLLTVRGLGYKFE 229 >gi|297158401|gb|ADI08113.1| putative two-component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 226 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 51/224 (22%), Positives = 92/224 (41%), Gaps = 8/224 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D D + +G + + D+ ++ L G E Sbjct: 5 LVVEDEESFSDALSYMLRKEGFEVAIAATGPEGLDEFERNGADLVLLDLML--PGLPGTE 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYRR 118 + R +R S VP+I ++ S + + G DD V KP R I A + Sbjct: 63 VCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGEP 122 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 +VS E GP+R+ D V G LP +E +LE L+ N G+ + + Q+ ++ Sbjct: 123 EEVSPAALEAGPVRMDVDRHVVTVGGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRVW 182 Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 G D + ++ H+ +LR K+ + + + R LGY + Sbjct: 183 GA-DYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFE 225 >gi|228923607|ref|ZP_04086887.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228836076|gb|EEM81437.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 232 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 53/229 (23%), Positives = 84/229 (36%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD A + D +G + E + + D+ ++ Sbjct: 6 ILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHVIETQPIDLVVLDIM--MPKMDGY 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IRA +P+I +S S + G DD + KP E++ARV A RR Sbjct: 64 EVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 123 Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 N + + R V GE L +E IL L ++ K I Sbjct: 124 LNQPKVAENKSALEVGGVVIDPERRTVNVYGEQVELTPKEFDILYLLASHPKKVYNVENI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221 F ++ N V HI LRKKL +K + + +GY+ + Sbjct: 184 FQQVWADDYYEGG-NTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTFN 231 >gi|308233471|ref|ZP_07664208.1| two component transcriptional regulator, winged helix family protein [Atopobium vaginae DSM 15829] gi|328943477|ref|ZP_08240942.1| DNA-binding response regulator [Atopobium vaginae DSM 15829] gi|327491446|gb|EGF23220.1| DNA-binding response regulator [Atopobium vaginae DSM 15829] Length = 241 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 42/225 (18%), Positives = 89/225 (39%), Gaps = 8/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D ++D A +G + + D+ ++ L Sbjct: 8 ILLVEDEKTIRDAVAAYLEREGYFVRSVGDGQSALEEFEKHSFDLIILDLML--PKLSGE 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYR 117 + R +R S VP+I ++ ++ + + G DD + KP RE++ARV + Sbjct: 66 RVCRAVRETSNVPIIMLTAKGEVEDRIIGLELGADDYLIKPFSPRELVARVRALLRRAHT 125 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + + G + + G V+ + L E ++L L G+ + ++ + Sbjct: 126 ESEPALEVLDFGQLVIDISGHKVLVENKEIDLTASEFKLLTTLARFPGRVYTRMELVEKV 185 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 G +D E ++SH+ LR KL + + + +GY + Sbjct: 186 LG-YDFEGYERTIDSHVKNLRAKLGDDPRNPRWLYTVHGVGYRFE 229 >gi|197335063|ref|YP_002156819.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio fischeri MJ11] gi|197316553|gb|ACH66000.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio fischeri MJ11] Length = 230 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 38/222 (17%), Positives = 94/222 (42%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D A +++ + G + L D+ ++ L G G + Sbjct: 5 ILVVEDEAPIREMLCFVLEQKGYEPIEAEDYDSALSLLCEPYPDLILLDWMLPGGSGINL 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ + ++P++ ++ + + + G DD + KP +E++AR+ A+ RR+ Sbjct: 65 IKHLKRDEFTKKIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELMARLKAVIRRVS 124 Query: 121 VSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++ ++ + + E ++L + M ++ + ++ Q+ + ++ Sbjct: 125 PTSIEELIDVQGLKLDPVSHRVTANDKPLDMGPTEFKMLHFFMTHQERVYSREQLLNNVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G + VE+ V+ HI +LRK L + V + R GY Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALEAEGHDRLVQTVRGAGYRF 225 >gi|258512529|ref|YP_003185963.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257479255|gb|ACV59574.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 239 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 49/231 (21%), Positives = 99/231 (42%), Gaps = 16/231 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA--REDVSAIEAFLIGKGEKV 60 +++DD A ++ F G +E + + D+ ++ L G Sbjct: 5 LVVDDEASIRTLVEYNFSRSGFDVETVDDGRVAYEKLKQGASKYDLVVLDLML--PGMDG 62 Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LE+ R +R ++P+I ++ + + G DD V KP RE++AR A+ RR Sbjct: 63 LEVCRRLRQEGVKIPIILLTARDEEVDLVLGLELGADDYVTKPFSPRELVARARAVLRRT 122 Query: 120 KVSNNRAETG---------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + A+ I + + V+G++ +E +L+Y M N +++ Sbjct: 123 ESREEDAQPTSSGKVLRAGNIVMDVARHEVRVRGQLVEFTPKEFELLQYFMENPEHVLSR 182 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 Q+ ++G + A + +V+ H+S LR+K+ + + + R +GY Sbjct: 183 DQLLDRVWG-YSAATDTRIVDVHVSHLREKIEDDSKNPKYIRTVRGIGYKF 232 >gi|256005030|ref|ZP_05430001.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 2360] gi|281418071|ref|ZP_06249091.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum JW20] gi|255990998|gb|EEU01109.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 2360] gi|281409473|gb|EFB39731.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum JW20] gi|316939889|gb|ADU73923.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 1313] Length = 239 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 43/228 (18%), Positives = 95/228 (41%), Gaps = 11/228 (4%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + +++D +++ ++G +E F E + + D+ ++ L G Sbjct: 8 LIYIVEDEKHIQELLRFNLEENGYEVECFEDGETMFEVVERKKPDLFVLDIML--PGVDG 65 Query: 61 LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPI----HHREILARVA 113 E+ + I+ + +P+I ++ + + G DD ++KP + Sbjct: 66 FEICKKIKENYDLKKIPIIMLTAKNDELDRVLGLELGADDYISKPFSVREFVARVKVAFR 125 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + S R G I + + R+ ++ + +E +L+ L+ NRGK +++ + Sbjct: 126 RQADSFENSPKRVNVGRITIDFERREVYKDNQIIEMTFKEFELLKLLIMNRGKVLSRDML 185 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 I+G FD E V+ HI LR+K+ + +++ R +GY Sbjct: 186 LQKIWG-FDFFGETRTVDVHIRYLRQKIEDDDNNPVYIETVRGIGYRF 232 >gi|165870463|ref|ZP_02215118.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|190568741|ref|ZP_03021645.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|164713958|gb|EDR19480.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|190560157|gb|EDV14138.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] Length = 218 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 41/222 (18%), Positives = 85/222 (38%), Gaps = 7/222 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + ++ + G + + + D ++ L Sbjct: 2 LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIM--MPEMDGLS 59 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRLK 120 + + IR S VP+I ++ ++ G DD + KP E+ + Sbjct: 60 VCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTKQ 119 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + GPI + R E GE L +E +L +L + G+ ++ Q+ ++G Sbjct: 120 EQQEEIQFGPILINEKSRKIEADGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG- 178 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D A V++H+ +R KL G + + + +GY + Sbjct: 179 YDYAGSTRTVDTHVKTMRLKLGE--GGNYIQTVWGVGYKFEV 218 >gi|126652917|ref|ZP_01725060.1| Two-component response regulator ycbL [Bacillus sp. B14905] gi|126590337|gb|EAZ84458.1| Two-component response regulator ycbL [Bacillus sp. B14905] Length = 230 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 41/228 (17%), Positives = 89/228 (39%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D +++ +G + N+ E + D+ ++ + L Sbjct: 5 ILLVEDDEAIREMVANFLLLEGFEVTTANNGEEALQYCLNQTFDLVILDIMI--PKLNGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-------REILARVAA 114 E+ ++IR + +P+I +S S G DD + KP + ++ R Sbjct: 63 EVLKVIREQAALPIIIMSAKDSDVDKALGLGLGADDYIAKPFSMLEFSARVKAVIRRATK 122 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + G +++ G+ L +E IL+ + NR + K QI+ Sbjct: 123 YAGQTDHKQDVVVIGDLKIDIVNFSINKSGKEVKLTSKEFAILKLFVTNRNRVFTKEQIY 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221 I+ +EN++ HI +LR+K+ + + + +GY + Sbjct: 183 QLIW-KDAYYGDENIINVHIRRLREKIEDDPSTPQYIKTLWGIGYKFE 229 >gi|37522238|ref|NP_925615.1| two-component response regulator [Gloeobacter violaceus PCC 7421] gi|35213238|dbj|BAC90610.1| two-component response regulator [Gloeobacter violaceus PCC 7421] Length = 245 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 92/228 (40%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++ G + E + S D+ ++ Sbjct: 12 ILVVDDEASIRRILETRLSMIGYDVVTAADGEEALEVFSREHPDLVVLDVM--MPKLDGY 69 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAA 114 + + +R S VP+I ++ + + + G DD V KP +E+ R Sbjct: 70 GVCQELRKDSDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRADR 129 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 S+ G +++ ++ R +GE L E +LE +++ G+ ++++I Sbjct: 130 DTASGIPSSGVIHVGDLKIDTNKRQVYKRGERIRLTGMEFSLLELVVSRSGEPFSRSEIL 189 Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 ++G + V+ VV+ HIS+LR KL + + + + R GY Sbjct: 190 QEVWGYTPERHVDTRVVDVHISRLRSKLEDDPSNPELILTARGTGYLF 237 >gi|300869112|ref|ZP_07113711.1| two component transcriptional regulator [Oscillatoria sp. PCC 6506] gi|300332881|emb|CBN58907.1| two component transcriptional regulator [Oscillatoria sp. PCC 6506] Length = 247 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 46/228 (20%), Positives = 89/228 (39%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++ G + E + D+ ++ Sbjct: 12 ILVVDDEASIRRILETRLSMIGYDVVTAADGEEALDTFRNTDPDLVVLDVM--MPKLDGY 69 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAA 114 + + +R S VP+I ++ + + + G DD V KP +E+ RV Sbjct: 70 GVCQELRKESDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDK 129 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 S+ IR+ ++ R E L E +LE L++ G+ ++++I Sbjct: 130 NGASGIPSSGVIHVTNIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEIL 189 Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 ++G + V+ VV+ HIS+LR KL + + + + R GY Sbjct: 190 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLF 237 >gi|317132005|ref|YP_004091319.1| two component transcriptional regulator, winged helix family [Ethanoligenens harbinense YUAN-3] gi|315469984|gb|ADU26588.1| two component transcriptional regulator, winged helix family [Ethanoligenens harbinense YUAN-3] Length = 232 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 50/220 (22%), Positives = 94/220 (42%), Gaps = 4/220 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + G DG + S+ S R D+ ++ L Sbjct: 4 LLVVEDDPALVTGLRYSMEKDGFQVRTAGSVREGWQAFSQDRPDLVVLDVGL--PDGTGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 +L R IR + P++ ++ + D G DD + KP RE+L+RV A+ RR Sbjct: 62 DLCRQIRVENGTPILFLTACDEETQVVMGLDMGGDDYITKPFRLRELLSRVRALLRRSAD 121 Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + +G + + ++ GE L E R+L LM N G+ + + Q+ ++ Sbjct: 122 KPVKTLVSGAVTLDTEEAHVCRNGEEISLTPAEYRLLRLLMQNEGRTLTREQLLDTLWDS 181 Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYS 219 + V+EN + +I +LR K+ + + + R +GY Sbjct: 182 GGDFVDENTLSVYIRRLRAKIEDNPSSPVHIHTVRGVGYR 221 >gi|229824434|ref|ZP_04450503.1| hypothetical protein GCWU000282_01757 [Catonella morbi ATCC 51271] gi|229786035|gb|EEP22149.1| hypothetical protein GCWU000282_01757 [Catonella morbi ATCC 51271] Length = 237 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 52/228 (22%), Positives = 97/228 (42%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D ++G ++E E + ++ D+ ++ L L Sbjct: 7 ILVVDDEKPISDIISFNLENEGYAIEKAYDGEQALKVFEKSQPDLVILDLML--PKMDGL 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR S VP+I ++ S + + G DD V KP +RE++ARV A RR V Sbjct: 65 EVCREIRKQSAVPVIMLTAKDSEIDKVLGLELGADDYVTKPFSNRELIARVKANLRRNLV 124 Query: 122 SNNRAETGPIR--------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + D GE L RE +L YL + G+ + + + Sbjct: 125 KEPEPQEVNKNEIVVGDLVIHQDAYIISKHGEEIELTHREFELLHYLARHIGQVMTREHL 184 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++ +D + V+ I +LR+K+ + + ++R +GY + Sbjct: 185 LETVWD-YDYFGDVRTVDVTIRRLREKIEDIPSHPTYIVTRRGVGYLL 231 >gi|21388712|dbj|BAC00821.1| phosphate regulon transcriptional regulatory protein [Rhodobacter sphaeroides f. sp. denitrificans] Length = 230 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 54/221 (24%), Positives = 96/221 (43%), Gaps = 4/221 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61 +L++D ++ +G + + + L A DV ++ L G +V Sbjct: 10 LLVEDEPAQREVLSYNLESEGFRVVQAGNGDEALMLVEEAGPDVIVLDWMLPSVSGIEVC 69 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + VP+I +S + ++G DD V KP E++ARV + RR + Sbjct: 70 RQLKSRPSTRSVPIIMLSARSEEVDRVRGLETGADDYVVKPYSVVELMARVRSQLRRARP 129 Query: 122 SNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S+ E IR+ + G++ L E R+L M G+ ++ Q+ ++G Sbjct: 130 SSVGLTLEFEDIRLDPETHKVHRGGQLLKLGPTEFRLLSTFMEKPGRVWSREQLLDRVWG 189 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D V+ V+ H+ +LRK L G DPV + R GY++ Sbjct: 190 R-DIYVDSRTVDVHVGRLRKALCLHGGEDPVRTVRGAGYAL 229 >gi|229917477|ref|YP_002886123.1| two component transcriptional regulator, winged helix family [Exiguobacterium sp. AT1b] gi|229468906|gb|ACQ70678.1| two component transcriptional regulator, winged helix family [Exiguobacterium sp. AT1b] Length = 236 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 48/229 (20%), Positives = 91/229 (39%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + E + D+ ++ L K + Sbjct: 5 ILVVDDEQPIADILKFKLEKEGYQVHVAYDGEEALVKVEEIQPDLILLDIMLPLK--DGM 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R +P+I ++ S + + G DD V KP RE+LARV A RR Sbjct: 63 EVCREVRKKYDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSSRELLARVKANMRRHAT 122 Query: 122 SNNRAETGPIRVF---------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + G D + E L RE ++ YL N G+ + + Sbjct: 123 APAPEAKGANANDIVIGDLTIHPDSYMVTKRDEKIELTHREFELIHYLAQNIGQVMTREH 182 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 + ++G +D + V+ + +LR+K+ + + ++R +GY + Sbjct: 183 LLQTVWG-YDYFGDVRTVDVTVRRLREKVEDNPSTPTYIITRRGVGYYL 230 >gi|332162605|ref|YP_004299182.1| DNA-binding transcriptional regulator BaeR [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318606705|emb|CBY28203.1| response regulator BaeR [Yersinia enterocolitica subsp. palearctica Y11] gi|325666835|gb|ADZ43479.1| DNA-binding transcriptional regulator BaeR [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 239 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 45/221 (20%), Positives = 87/221 (39%), Gaps = 5/221 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + + G S + + + + ++ L G + Sbjct: 15 LIVEDEPKLGQLLVDYLQAAGYSTQWLTNGAEVVAAVRQSPPAIILLDLML--PGSDGIS 72 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR S VP++ ++ L + G DD + KP RE++ARV I RR + Sbjct: 73 ICREIRRFSDVPIMMVTAKTEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCQQQ 132 Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + QG + L E R+L+ L G ++ Q+ + +Y + Sbjct: 133 REQPSESAPLIIDESRFQASYQGHLLELTPAEFRLLKILATQPGHVFSREQLLNNLYDDY 192 Query: 182 DEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 V + ++SHI LR+KL + + +GY + Sbjct: 193 -RVVTDRTIDSHIKNLRRKLEALDGEKPFIRAVYGMGYRWE 232 >gi|302874727|ref|YP_003843360.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] gi|307690659|ref|ZP_07633105.1| two component transcriptional regulator, winged helix family protein [Clostridium cellulovorans 743B] gi|302577584|gb|ADL51596.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] Length = 234 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 39/223 (17%), Positives = 85/223 (38%), Gaps = 5/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +++DD + + + + + + + + ++ L G G +V Sbjct: 6 ILIVDDEEHIVELIKYNLEAEEYKVLTAHDGIEAGKIAKKEKPSLILLDLMLPGISGMEV 65 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118 + R S++P+I ++ + + G DD + KP RE+ + Sbjct: 66 CKKIRRDDEISEIPIIMLTAKSDELDKILGLELGADDYITKPFSIRELLARVKAVLRRTN 125 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + G + + + L +E +L L+ NRGK + + + I+ Sbjct: 126 TVAVSTNSRFGELTIDFSKYEVRKNDIKVDLTLKEFELLNILVKNRGKVLTRDVLLDKIW 185 Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 G ++ E V+ HI LRKK+ + +++ R +GY Sbjct: 186 G-YEYIGETRTVDVHIRHLRKKIEDDDSSPKYIETIRGIGYRF 227 >gi|163802439|ref|ZP_02196332.1| recombination associated protein [Vibrio sp. AND4] gi|159173740|gb|EDP58555.1| recombination associated protein [Vibrio sp. AND4] Length = 229 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 37/222 (16%), Positives = 93/222 (41%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D A +++ + G + + D+ ++ L G G Sbjct: 5 ILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSAVTKLAEPFPDLVLLDWMLPGGSGINF 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ + +P++ ++ + + + G DD + KP +E++AR+ A+ RR+ Sbjct: 65 IKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIRRVT 124 Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + + +++ E + E ++L + M ++ + ++ Q+ + ++ Sbjct: 125 PTALEDVIDVQGLKLDPVSHRVTANDEAIDMGPTEFKMLHFFMTHQERVYSREQLLNNVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G + VE+ V+ HI +LRK L + + R GY Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALEAAGHDKLIQTVRGAGYRF 225 >gi|118473019|ref|YP_889726.1| DNA-binding response regulator [Mycobacterium smegmatis str. MC2 155] gi|160012470|sp|A0R3I8|MPRA_MYCS2 RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial persistence regulator A gi|118174306|gb|ABK75202.1| DNA-binding response regulator [Mycobacterium smegmatis str. MC2 155] Length = 230 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 44/224 (19%), Positives = 90/224 (40%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V++ +G S+E ++ R D ++ L Sbjct: 5 ILVVDDDRAVRESLRRSLSFNGYSVELAQDGVEALDAITNNRPDALILDVM--MPRLDGL 62 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIY 116 E+ R +R+ P++ ++ S+ + D+G DD + KP + A + Sbjct: 63 EVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTV 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + + + R+ G L R E +LE L+AN + + +++I Sbjct: 123 SDDSGDSQKMTFSDLTLDPVTREVTRGGRQISLTRTEFSLLEMLIANPRRVLTRSRILEE 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G FD N +E +I LR+K + + + R +GY + Sbjct: 183 VWG-FDFPTSGNALEVYIGYLRRKTEAEGEPRLIHTVRGVGYVL 225 >gi|86739691|ref|YP_480091.1| two component transcriptional regulator [Frankia sp. CcI3] gi|86566553|gb|ABD10362.1| two component transcriptional regulator, winged helix family [Frankia sp. CcI3] Length = 321 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 50/225 (22%), Positives = 94/225 (41%), Gaps = 10/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD ALV + + G ++ + + D+ ++ L G +E Sbjct: 59 LVVDDDALVSEVVDRYLRNAGFDVDRAADGPTALRVAETTPPDLVVLDLML--PGLDGIE 116 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +RAH VP+I ++ + + G DD V KP RE+ RV ++ RR + Sbjct: 117 VFRRLRAHRPVPVIMLTARADESDRITGLEIGADDYVTKPFSPRELTLRVQSVLRRANET 176 Query: 123 NNRA-----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 A G + V + R G L RE +L +L+ G+ + ++ + Sbjct: 177 VPGAEAGVLRAGTLVVDAAARTATRHGVPLGLTVREFDLLAFLLRRPGRAFTRGELLEHV 236 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 +G + + V HI +LR+K+ + + + +GY D Sbjct: 237 WGW--SYGDPSTVTVHIRRLREKIEDDPTAPRMLVTVWGVGYRYD 279 >gi|148654964|ref|YP_001275169.1| two component transcriptional regulator [Roseiflexus sp. RS-1] gi|148567074|gb|ABQ89219.1| two component transcriptional regulator, winged helix family [Roseiflexus sp. RS-1] Length = 229 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 46/223 (20%), Positives = 91/223 (40%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D A ++ A G + ++ L R D+ ++ L G + Sbjct: 5 ILIIEDEASIRTVARAYLEQAGFRVLLADNGPEGVELARRERPDLVILDLNL--PGMDGM 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYR 117 E+ +R S V +I ++ + G DD V KP RE++AR+ Sbjct: 63 EVAARLRQESDVFIIMLTARSEESDRVAGLRIGADDYVIKPFSPRELVARIEAILRRRRS 122 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 V + +R+ + R+ V + L E +L L G+ +++ QI + Sbjct: 123 ASPVIDATLRFAHLRIDPERREVYVGDQAIDLTTTEFDVLLALARRHGRVLSREQILDLV 182 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G + + VV+ ++ ++R+KL G + + R +GY Sbjct: 183 WG-DNFYGTDRVVDVYVGQVRRKLEAVAGVPLIQTVRGVGYKF 224 >gi|15901089|ref|NP_345693.1| DNA-binding response regulator [Streptococcus pneumoniae TIGR4] gi|111657843|ref|ZP_01408558.1| hypothetical protein SpneT_02000966 [Streptococcus pneumoniae TIGR4] gi|116515650|ref|YP_816556.1| DNA-binding response regulator [Streptococcus pneumoniae D39] gi|148985122|ref|ZP_01818361.1| DNA-binding response regulator [Streptococcus pneumoniae SP3-BS71] gi|148989249|ref|ZP_01820629.1| DNA-binding response regulator [Streptococcus pneumoniae SP6-BS73] gi|148993837|ref|ZP_01823239.1| DNA-binding response regulator [Streptococcus pneumoniae SP9-BS68] gi|148998657|ref|ZP_01826096.1| DNA-binding response regulator [Streptococcus pneumoniae SP11-BS70] gi|149002595|ref|ZP_01827527.1| DNA-binding response regulator [Streptococcus pneumoniae SP14-BS69] gi|149007115|ref|ZP_01830784.1| DNA-binding response regulator [Streptococcus pneumoniae SP18-BS74] gi|149012278|ref|ZP_01833347.1| DNA-binding response regulator [Streptococcus pneumoniae SP19-BS75] gi|149019219|ref|ZP_01834581.1| DNA-binding response regulator [Streptococcus pneumoniae SP23-BS72] gi|168484877|ref|ZP_02709822.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CDC1873-00] gi|168486549|ref|ZP_02711057.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CDC1087-00] gi|168489055|ref|ZP_02713254.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae SP195] gi|168491148|ref|ZP_02715291.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CDC0288-04] gi|168493149|ref|ZP_02717292.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CDC3059-06] gi|168577194|ref|ZP_02723003.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae MLV-016] gi|169832995|ref|YP_001694658.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Streptococcus pneumoniae Hungary19A-6] gi|194397986|ref|YP_002037828.1| response regulator [Streptococcus pneumoniae G54] gi|221231922|ref|YP_002511074.1| response regulator protein [Streptococcus pneumoniae ATCC 700669] gi|225854693|ref|YP_002736205.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae JJA] gi|225856894|ref|YP_002738405.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae P1031] gi|225859008|ref|YP_002740518.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae 70585] gi|225860939|ref|YP_002742448.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae Taiwan19F-14] gi|237649929|ref|ZP_04524181.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CCRI 1974] gi|237822522|ref|ZP_04598367.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CCRI 1974M2] gi|298230882|ref|ZP_06964563.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae str. Canada MDR_19F] gi|298254363|ref|ZP_06977949.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae str. Canada MDR_19A] gi|298502777|ref|YP_003724717.1| DNA-binding response regulator [Streptococcus pneumoniae TCH8431/19A] gi|303254277|ref|ZP_07340386.1| response regulator protein [Streptococcus pneumoniae BS455] gi|303258862|ref|ZP_07344841.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae SP-BS293] gi|303261546|ref|ZP_07347493.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae SP14-BS292] gi|303264216|ref|ZP_07350136.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae BS397] gi|303266153|ref|ZP_07352046.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae BS457] gi|303268120|ref|ZP_07353920.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae BS458] gi|307067876|ref|YP_003876842.1| CheY-like receiver/winged-helix DNA-binding domain-containing response regulator [Streptococcus pneumoniae AP200] gi|307127185|ref|YP_003879216.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae 670-6B] gi|14193094|gb|AAK55817.1|AF219111_1 putative response regulator [Streptococcus pneumoniae] gi|5830523|emb|CAB54568.1| response regulator [Streptococcus pneumoniae] gi|14972708|gb|AAK75333.1| DNA-binding response regulator [Streptococcus pneumoniae TIGR4] gi|116076226|gb|ABJ53946.1| DNA-binding response regulator [Streptococcus pneumoniae D39] gi|147755494|gb|EDK62542.1| DNA-binding response regulator [Streptococcus pneumoniae SP11-BS70] gi|147759206|gb|EDK66199.1| DNA-binding response regulator [Streptococcus pneumoniae SP14-BS69] gi|147761419|gb|EDK68385.1| DNA-binding response regulator [Streptococcus pneumoniae SP18-BS74] gi|147763604|gb|EDK70539.1| DNA-binding response regulator [Streptococcus pneumoniae SP19-BS75] gi|147922567|gb|EDK73685.1| DNA-binding response regulator [Streptococcus pneumoniae SP3-BS71] gi|147925227|gb|EDK76306.1| DNA-binding response regulator [Streptococcus pneumoniae SP6-BS73] gi|147927662|gb|EDK78687.1| DNA-binding response regulator [Streptococcus pneumoniae SP9-BS68] gi|147931089|gb|EDK82068.1| DNA-binding response regulator [Streptococcus pneumoniae SP23-BS72] gi|168995497|gb|ACA36109.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae Hungary19A-6] gi|172041974|gb|EDT50020.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CDC1873-00] gi|183570421|gb|EDT90949.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CDC1087-00] gi|183572520|gb|EDT93048.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae SP195] gi|183574479|gb|EDT95007.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CDC0288-04] gi|183576730|gb|EDT97258.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CDC3059-06] gi|183577211|gb|EDT97739.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae MLV-016] gi|194357653|gb|ACF56101.1| response regulator TCS02 [Streptococcus pneumoniae G54] gi|220674382|emb|CAR68932.1| response regulator protein [Streptococcus pneumoniae ATCC 700669] gi|225721755|gb|ACO17609.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae 70585] gi|225722501|gb|ACO18354.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae JJA] gi|225724998|gb|ACO20850.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae P1031] gi|225727250|gb|ACO23101.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae Taiwan19F-14] gi|298238372|gb|ADI69503.1| DNA-binding response regulator [Streptococcus pneumoniae TCH8431/19A] gi|301794310|emb|CBW36735.1| response regulator protein [Streptococcus pneumoniae INV104] gi|301800148|emb|CBW32753.1| response regulator protein [Streptococcus pneumoniae OXC141] gi|301801917|emb|CBW34641.1| response regulator protein [Streptococcus pneumoniae INV200] gi|302598771|gb|EFL65808.1| response regulator protein [Streptococcus pneumoniae BS455] gi|302637126|gb|EFL67614.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae SP14-BS292] gi|302639805|gb|EFL70261.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae SP-BS293] gi|302642337|gb|EFL72684.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae BS458] gi|302644323|gb|EFL74577.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae BS457] gi|302646028|gb|EFL76255.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae BS397] gi|306409413|gb|ADM84840.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Streptococcus pneumoniae AP200] gi|306484247|gb|ADM91116.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae 670-6B] gi|332073565|gb|EGI84044.1| response regulator [Streptococcus pneumoniae GA17570] gi|332074837|gb|EGI85309.1| response regulator [Streptococcus pneumoniae GA41301] gi|332200675|gb|EGJ14747.1| response regulator [Streptococcus pneumoniae GA41317] gi|332201690|gb|EGJ15760.1| response regulator [Streptococcus pneumoniae GA47368] gi|332203075|gb|EGJ17143.1| response regulator [Streptococcus pneumoniae GA47901] Length = 234 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 43/233 (18%), Positives = 94/233 (40%), Gaps = 14/233 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + + + + D+ ++ L L Sbjct: 4 ILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILDLML--PEIDGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL----------AR 111 E+ + IR S VP++ +S S + + G DD V KP +RE+ Sbjct: 62 EVAKTIRKTSSVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRSQP 121 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + + + G + + D + GE L RE +L +L ++ G+ + + Sbjct: 122 MPVDGQEADSKPQPIQIGDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHTGQVITRE 181 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223 + ++G +D + V+ + +LR+K+ + + + ++R +GY + N Sbjct: 182 HLLETVWG-YDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYMRNN 233 >gi|302544413|ref|ZP_07296755.1| DNA-binding response regulator RegX3 [Streptomyces hygroscopicus ATCC 53653] gi|302462031|gb|EFL25124.1| DNA-binding response regulator RegX3 [Streptomyces himastatinicus ATCC 53653] Length = 226 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 52/224 (23%), Positives = 95/224 (42%), Gaps = 8/224 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D D + +G + + D+ ++ L G E Sbjct: 5 LVVEDEESFSDALSYMLRKEGFEVAIAATGPEGLDEFERNGADLVLLDLML--PGLPGTE 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +R S VP+I ++ S + + G DD V KP RE++AR+ A+ RR Sbjct: 63 VCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGEP 122 Query: 123 NNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 GP+R+ D V G LP +E +LE L+ N G+ + + Q+ ++ Sbjct: 123 EEVTPAALEAGPVRMDVDRHVVTVGGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRVW 182 Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 G D + ++ H+ +LR K+ + + + R LGY + Sbjct: 183 GA-DYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFE 225 >gi|228910706|ref|ZP_04074517.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis IBL 200] gi|228942035|ref|ZP_04104578.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228974966|ref|ZP_04135527.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981559|ref|ZP_04141856.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis Bt407] gi|228778238|gb|EEM26508.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis Bt407] gi|228784819|gb|EEM32837.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228817704|gb|EEM63786.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228848974|gb|EEM93817.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis IBL 200] gi|326942637|gb|AEA18533.1| two-component response regulator vanR [Bacillus thuringiensis serovar chinensis CT-43] Length = 232 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 53/229 (23%), Positives = 85/229 (37%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD A + D +G + E + + D+ ++ Sbjct: 6 ILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIETQPIDLVVLDIM--MPKMDGY 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IRA +P+I +S S + G DD + KP E++ARV A RR Sbjct: 64 EVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFFT 123 Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 N + + R +V GE L +E IL L ++ K I Sbjct: 124 LNQPKVAESKSALEIGGVVINPERRTVDVYGEQIELTPKEFDILYLLASHPKKVYNVENI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221 F ++ N V HI LRKKL +K + + +GY+ + Sbjct: 184 FQHVWADDYYEGG-NTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTFN 231 >gi|196036865|ref|ZP_03104252.1| DNA-binding response regulator [Bacillus cereus W] gi|195990518|gb|EDX54499.1| DNA-binding response regulator [Bacillus cereus W] Length = 254 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 36/222 (16%), Positives = 94/222 (42%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ +G + + D+ ++ Sbjct: 34 ILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINEVKVDMVILDIM--MPNMDGF 91 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ +R + +P++ ++ + F G DD + KP E++ RV A+ +R ++ Sbjct: 92 DVCFELRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 151 Query: 122 SNNRAETGPIR-VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + +++ + + + + LP +E +L L + G+ ++ Q+ ++G Sbjct: 152 TVSQSIQVGTVLLNRKTFEVAIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG- 210 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D E ++ HI++LR+K + + + + R LGY ++ Sbjct: 211 YDFEGNERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLEV 252 >gi|125975548|ref|YP_001039458.1| two component transcriptional regulator [Clostridium thermocellum ATCC 27405] gi|256005901|ref|ZP_05430847.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 2360] gi|281416559|ref|ZP_06247579.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum JW20] gi|125715773|gb|ABN54265.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum ATCC 27405] gi|255990137|gb|EEU00273.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 2360] gi|281407961|gb|EFB38219.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum JW20] gi|316939665|gb|ADU73699.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 1313] Length = 230 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 42/228 (18%), Positives = 92/228 (40%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + +G S++ + D+ ++ L G Sbjct: 4 ILIVEDDESIGELLRDYLEINGFSVDICMNGTEGLKRIRDGEYDLLILDIML--PGMNGY 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IR +P++ +S + G DD + KP E++ARV A + + Sbjct: 62 EILKKIRDEKDIPVLIVSAKKEEFDKIHGLKLGADDYITKPFSPGELVARVNAHIAKYER 121 Query: 122 SNNRAETGPIR--------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 N+ + + D R V G+ L ++E +L +L N + ++ +I Sbjct: 122 LRNKYGNNNVNSITIRGLEIQKDSRRVFVNGKEVNLAQKEFDVLLFLAQNPNRVFSREEI 181 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 F ++G+ D + V HI ++R+K+ + +++ GY + Sbjct: 182 FDRVWGM-DALGDAATVTVHIGRIREKIESDPSNPQYIETVWGAGYRL 228 >gi|296168092|ref|ZP_06850158.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295896899|gb|EFG76527.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 227 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 53/225 (23%), Positives = 101/225 (44%), Gaps = 9/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + D L +G + D+ ++ L G + Sbjct: 5 LIVEDEESLADPLAFLLRKEGFEATVVTDGQAALAEFDRGGADIVLLDLML--PGMSGTD 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + +RA S VP+I ++ S + + G DD V KP RE++AR+ A+ RR Sbjct: 63 VCKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDD 122 Query: 123 NNRAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 ++ GP+R+ + V G+ LP +E +LEYLM N G+ + + Q+ + Sbjct: 123 DSEISDGVLESGPVRMDVERHVVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLIDRV 182 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 +G D + ++ H+ +LR K+ + + + R LGY ++ Sbjct: 183 WGA-DYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVRGLGYKLE 226 >gi|227832117|ref|YP_002833824.1| two-component system response regulator [Corynebacterium aurimucosum ATCC 700975] gi|262184032|ref|ZP_06043453.1| two-component system response regulator [Corynebacterium aurimucosum ATCC 700975] gi|227453133|gb|ACP31886.1| two-component system response regulator [Corynebacterium aurimucosum ATCC 700975] Length = 232 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 46/231 (19%), Positives = 92/231 (39%), Gaps = 14/231 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + D L +G + ++ D+ ++ L G Sbjct: 4 ILIVEDEESLADPLAFLLRKEGFDVLLAPDGPSALEQFAANNVDIVLLDLML--PGMSGT 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILAR 111 ++ + +R S VP+I ++ S + + G DD V KP R Sbjct: 62 DVCKQLRTTSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLRRGQD 121 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 ++ + + E G +R+ + V GE +P +E +LEYL+ N G+ + + Sbjct: 122 ASSEHAEEEPDEQILEGGRVRMDVERHTVLVAGEPVSMPLKEFDLLEYLLRNAGRVLTRG 181 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 Q+ I+G D + ++ H+ +LR K+ + + R LGY + Sbjct: 182 QLIDRIWGA-DYVGDTKTLDVHVKRLRSKIEAEPSRPQQLVTVRGLGYKFE 231 >gi|254506701|ref|ZP_05118841.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio parahaemolyticus 16] gi|323499854|ref|ZP_08104813.1| response regulator [Vibrio sinaloensis DSM 21326] gi|219550282|gb|EED27267.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio parahaemolyticus 16] gi|323315095|gb|EGA68147.1| response regulator [Vibrio sinaloensis DSM 21326] Length = 229 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 37/222 (16%), Positives = 93/222 (41%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D A +++ + G + + D+ ++ L G G Sbjct: 5 ILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSAVTKLAEPFPDLVLLDWMLPGGSGINF 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ + +P++ ++ + + + G DD + KP +E++AR+ A+ RR+ Sbjct: 65 IKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIRRVT 124 Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + + +++ E + E ++L + M ++ + ++ Q+ + ++ Sbjct: 125 PTALEDVIDVQGLKLDPVSHRVTANDEALDMGPTEFKMLHFFMTHQERVYSREQLLNNVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G + VE+ V+ HI +LRK L + + R GY Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALEAAGHDKLIQTVRGAGYRF 225 >gi|206968679|ref|ZP_03229634.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Bacillus cereus AH1134] gi|229096888|ref|ZP_04227857.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock3-29] gi|229115876|ref|ZP_04245274.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock1-3] gi|229173099|ref|ZP_04300650.1| Two component transcriptional regulator, winged helix [Bacillus cereus MM3] gi|229182148|ref|ZP_04309435.1| Two component transcriptional regulator, winged helix [Bacillus cereus 172560W] gi|206735720|gb|EDZ52878.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Bacillus cereus AH1134] gi|228601322|gb|EEK58856.1| Two component transcriptional regulator, winged helix [Bacillus cereus 172560W] gi|228610432|gb|EEK67703.1| Two component transcriptional regulator, winged helix [Bacillus cereus MM3] gi|228667619|gb|EEL23063.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock1-3] gi|228686498|gb|EEL40407.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock3-29] Length = 237 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 42/231 (18%), Positives = 90/231 (38%), Gaps = 12/231 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D +++ + + + + L + + D+ ++ + Sbjct: 5 ILIVEDEENIREVCKRYLEREEYEVYTAVNGKEGWDLFLTHQPDLIILDLM--MPKKDGW 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL IR S VP+I ++ + + G DD + KP RE++ RV I RR Sbjct: 63 ELCEEIRQQSNVPIIMLTAKGEERDRILGLTMGADDYLTKPFSPRELVLRVQIILRRGSH 122 Query: 122 SNNR--------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + E ++++ R V + L +E +L + + + +++Q+ Sbjct: 123 VPIQAKESLLEVIEFPDLKIYPKTRYVLVCDKEVELTVKEFEVLYLMAKHPKQVFSRSQL 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223 I+ F N V +S+LR+KL + + +GY + N Sbjct: 183 LELIWD-FGHEGASNTVTVLVSRLREKLEKHTIKNRWIHTVWGIGYRFEPN 232 >gi|218903108|ref|YP_002450942.1| DNA-binding response regulator [Bacillus cereus AH820] gi|218539130|gb|ACK91528.1| DNA-binding response regulator [Bacillus cereus AH820] Length = 254 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 36/222 (16%), Positives = 94/222 (42%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ +G + + D+ ++ Sbjct: 34 ILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINEVKVDMVILDIM--MPNMDGF 91 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ +R + +P++ ++ + F G DD + KP E++ RV A+ +R ++ Sbjct: 92 DVCFELRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 151 Query: 122 SNNRAETGPIR-VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + +++ + + + + LP +E +L L + G+ ++ Q+ ++G Sbjct: 152 TVSQSIQVGTVLLNRKTFEVAIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG- 210 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D E ++ HI++LR+K + + + + R LGY ++ Sbjct: 211 YDFEGNERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLEV 252 >gi|259047884|ref|ZP_05738285.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175] gi|259035561|gb|EEW36816.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175] Length = 238 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 52/229 (22%), Positives = 95/229 (41%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + E D+ ++ L L Sbjct: 4 ILVVDDEKPISDIVKFSLSKEGFEVITAFDGEEGLAAFHEKNPDLVILDLML--PKIDGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR S VP+I ++ S + + G DD V KP +RE++ARV A RR ++ Sbjct: 62 EVCREIRKTSHVPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELIARVKANLRRQQL 121 Query: 122 SNNRAETGPI---------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + E + D +GE L RE +L YL + G+ + + Sbjct: 122 APAETEEEKTANEIVLGALTIHEDAYVVSKRGEEIELTHREFELLHYLAKHIGQVITREH 181 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + ++G +D + V+ + +LR+K+ + + ++R +GY I Sbjct: 182 LLQTVWG-YDYFGDVRTVDVTVRRLREKIEDTPSHPTWIMTRRGVGYYI 229 >gi|228971998|ref|ZP_04132616.1| DNA-binding response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978608|ref|ZP_04138981.1| DNA-binding response regulator [Bacillus thuringiensis Bt407] gi|228781104|gb|EEM29309.1| DNA-binding response regulator [Bacillus thuringiensis Bt407] gi|228787712|gb|EEM35673.1| DNA-binding response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] Length = 228 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 37/222 (16%), Positives = 92/222 (41%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ +G + D+ ++ Sbjct: 8 ILIVDDDPHIRELVSVFLEREGFQTYEAIDGVDALRKMDDVKVDMVILDIM--MPNMDGF 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ +R + +P++ ++ + F G DD + KP E++ RV A+ +R ++ Sbjct: 66 DVCFELRKYYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 125 Query: 122 SNNRAETGPIR-VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + +++ + + + LP +E +L L + G+ ++ Q+ I+G Sbjct: 126 TVSQSIQVGNVLLNRKTFEVTSGEQTVMLPLKEFELLFTLGSKSGRTCSREQLIEEIWG- 184 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D E ++ HI++LR+K + + + + R LGY ++ Sbjct: 185 YDFEGNERTLDVHINRLREKFQEEQSKFSIKTIRGLGYRLEV 226 >gi|41410081|ref|NP_962917.1| RegX3 [Mycobacterium avium subsp. paratuberculosis K-10] gi|118466224|ref|YP_883789.1| DNA-binding response regulator [Mycobacterium avium 104] gi|254777097|ref|ZP_05218613.1| DNA-binding response regulator [Mycobacterium avium subsp. avium ATCC 25291] gi|41398914|gb|AAS06533.1| RegX3 [Mycobacterium avium subsp. paratuberculosis K-10] gi|118167511|gb|ABK68408.1| DNA-binding response regulator [Mycobacterium avium 104] Length = 227 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 54/225 (24%), Positives = 101/225 (44%), Gaps = 9/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + D L +G A D+ ++ L G + Sbjct: 5 LIVEDEESLADPLAFLLRKEGFEATVVTDGSAALAEFDRAGADIVLLDLML--PGMSGTD 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + +RA S VP+I ++ S + + G DD V KP RE++AR+ A+ RR Sbjct: 63 VCKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDD 122 Query: 123 NNRAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 ++ GP+R+ + V G+ LP +E +LEYLM N G+ + + Q+ + Sbjct: 123 DSEISDGVLESGPVRMDVERHVVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLIDRV 182 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 +G D + ++ H+ +LR K+ + + + R LGY ++ Sbjct: 183 WGA-DYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVRGLGYKLE 226 >gi|186684336|ref|YP_001867532.1| two component transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186466788|gb|ACC82589.1| two component transcriptional regulator, winged helix family [Nostoc punctiforme PCC 73102] Length = 250 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 46/232 (19%), Positives = 93/232 (40%), Gaps = 16/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-------EDVSAIEAFLI 54 ++++D L+++ ++G + S D+ ++ L Sbjct: 21 ILVVEDEELIQEMLAVALEEEGYGVITAPDGRSAIEYLKSFETNSGEVPFDLIILDLML- 79 Query: 55 GKGEKVLELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113 L++ R++ + VP++ +S S + + G DD + KP RE++AR Sbjct: 80 -PQINGLDICRLLRHQGNPVPILMLSAKGSETDRVLGLEVGADDYLTKPFSMRELVARCR 138 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQG----EVFPLPRRERRILEYLMANRGKRVA 169 A+ RR ++SN E + + L +E R+LE M+ + + Sbjct: 139 ALLRRQRLSNLPQLPVLKFKDVTLNPQECRVLVRGQEVSLSPKEFRLLELFMSYARRVWS 198 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + Q+ ++G D + V+ HI LR+KL + + + + R GY Sbjct: 199 REQLLDQVWG-PDFVGDSKTVDVHIRWLREKLEQDPSHPEYIVTVRGFGYRF 249 >gi|307326975|ref|ZP_07606165.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] gi|306887273|gb|EFN18269.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] Length = 226 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 52/224 (23%), Positives = 95/224 (42%), Gaps = 8/224 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D D + +G + + D+ ++ L G E Sbjct: 5 LVVEDEESFSDALSYMLRKEGFEVAIATTGPEGLDEFERNGADLVLLDLML--PGLPGTE 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +R S VP+I ++ S + + G DD V KP RE++AR+ A+ RR Sbjct: 63 VCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGEP 122 Query: 123 NNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 GP+R+ D V G LP +E +LE L+ N G+ + + Q+ ++ Sbjct: 123 EEITPAALEAGPVRMDVDRHVVTVGGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRVW 182 Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 G D + ++ H+ +LR K+ + + + R LGY + Sbjct: 183 GA-DYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFE 225 >gi|229133940|ref|ZP_04262762.1| Two component transcriptional regulator, winged helix [Bacillus cereus BDRD-ST196] gi|228649500|gb|EEL05513.1| Two component transcriptional regulator, winged helix [Bacillus cereus BDRD-ST196] Length = 237 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 42/231 (18%), Positives = 90/231 (38%), Gaps = 12/231 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D +++ + + + + L + + D+ ++ + Sbjct: 5 ILIVEDEENIREVCKRYLEREEYEVYTAVNGKEGWDLFLTHQPDLIILDLM--MPKKDGW 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL IR S VP+I ++ + + G DD + KP RE++ RV I RR Sbjct: 63 ELCEEIRQQSNVPIIMLTAKGEERDRILGLTMGADDYLTKPFSPRELVLRVQIILRRGSQ 122 Query: 122 SNNR--------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + E ++++ R V + L +E +L + + + +++Q+ Sbjct: 123 VPIQAKESLLEVIEFPDLKIYPKTRYVLVCDKEVELTVKEFEVLYLMAKHPKQVFSRSQL 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223 I+ F N V +S+LR+KL + + +GY + N Sbjct: 183 LELIWD-FGHEGASNTVTVLVSRLREKLEKHTIKNRWIHTVWGIGYRFEPN 232 >gi|251798517|ref|YP_003013248.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247546143|gb|ACT03162.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 228 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 50/229 (21%), Positives = 91/229 (39%), Gaps = 10/229 (4%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + +++DD ++D ++G S+ L D+ ++ Sbjct: 3 VILVVDDDTEIRDVIHVYLRNEGHSVLEAGDGSEAIDLLVQQEVDLVILDVM--MPRMDG 60 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ IR VP+I +S + G DD V KP + E++ARV A RR K Sbjct: 61 IKACMHIREQYSVPIIMLSAKEGDIDKIMGLSIGADDYVTKPFNPMELIARVKAQLRRQK 120 Query: 121 VSNNRAETGPIR------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + ++ + ++G+V L E IL+ L AN G+ + I+ Sbjct: 121 MLTSKEGVHDQITIDELVIDVAKHFVSIRGQVVMLTPLEFAILKLLAANPGQVFSADTIY 180 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 +++ +N V HI LR+KL N + + + +GY +D Sbjct: 181 ESVWKER-IGFSDNTVMVHIRNLREKLEINPRKPEYIKTVWGVGYKMDK 228 >gi|123441447|ref|YP_001005434.1| DNA-binding transcriptional regulator BaeR [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122088408|emb|CAL11200.1| two-component system response regulator [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 239 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 45/221 (20%), Positives = 87/221 (39%), Gaps = 5/221 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + + G S + + + + ++ L G + Sbjct: 15 LIVEDEPKLGQLLVDYLQAAGYSTQWLTNGAEVVAAVRQSPPAIILLDLML--PGSDGIS 72 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR S VP++ ++ L + G DD + KP RE++ARV I RR + Sbjct: 73 ICREIRRFSDVPIMMVTAKTEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCQQQ 132 Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + QG + L E R+L+ L G ++ Q+ + +Y + Sbjct: 133 REQPSESAPLIIDESRFQASYQGHLLELTPAEFRLLKILATQPGHVFSREQLLNNLYDDY 192 Query: 182 DEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 V + ++SHI LR+KL + + +GY + Sbjct: 193 -RVVTDRTIDSHIKNLRRKLEALDGEKPFIRAVYGMGYRWE 232 >gi|228933286|ref|ZP_04096142.1| DNA-binding response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228826447|gb|EEM72224.1| DNA-binding response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 234 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 36/222 (16%), Positives = 94/222 (42%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ +G + + D+ ++ Sbjct: 14 ILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINEVKVDMVILDIM--MPNMDGF 71 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ +R + +P++ ++ + F G DD + KP E++ RV A+ +R ++ Sbjct: 72 DVCLELRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 131 Query: 122 SNNRAETGPIR-VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + +++ + + + + LP +E +L L + G+ ++ Q+ ++G Sbjct: 132 TVSQSIQVGTVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG- 190 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D E ++ HI++LR+K + + + + R LGY ++ Sbjct: 191 YDFEGNERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLEV 232 >gi|303239890|ref|ZP_07326413.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] gi|302592600|gb|EFL62325.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] Length = 236 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 47/228 (20%), Positives = 103/228 (45%), Gaps = 11/228 (4%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + +++D +++ ++G ++ F+S E + + D+ ++ L G Sbjct: 5 LIYVVEDEKHIQELIGFNLKENGYDVKCFDSGETMLSECQNMKPDLFLLDIML--PGIDG 62 Query: 61 LELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 LE+ R I+ S ++P+I ++ + + G +D + KP RE++AR+ I+R Sbjct: 63 LEVCRRIKESSSLKKIPIIMLTAKNDEFDKVLGLELGAEDYITKPFSVRELIARIKVIFR 122 Query: 118 RLKVSNNRAETG----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 R S I + + + ++ + +E +L+ L+ N+G +++ + Sbjct: 123 RQADSVETNPEKIKVGKITIDVARHEVYKEKQLIEMTYKEFELLKLLILNKGIVLSRELL 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 I+G FD E V+ HI LR+K+ + +++ R +GY Sbjct: 183 LEKIWG-FDYYGETRTVDVHIRYLRQKIEDDDNSPVYIETVRGVGYRF 229 >gi|229016644|ref|ZP_04173581.1| Two-component response regulator [Bacillus cereus AH1273] gi|229022859|ref|ZP_04179379.1| Two-component response regulator [Bacillus cereus AH1272] gi|228738394|gb|EEL88870.1| Two-component response regulator [Bacillus cereus AH1272] gi|228744634|gb|EEL94699.1| Two-component response regulator [Bacillus cereus AH1273] Length = 218 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 39/222 (17%), Positives = 83/222 (37%), Gaps = 7/222 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + ++ + G + + + D ++ L Sbjct: 2 LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALRKLENDHYDFVVLDIM--MPEMDGLS 59 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRLK 120 + + IR S VP+I ++ ++ G DD + KP E+ + Sbjct: 60 VCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTKQ 119 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + GPI + R E G+ L +E +L +L + G+ ++ Q+ ++G Sbjct: 120 EQQEEIQFGPILINEKSRRIETDGQAVSLTVKEFDLLYFLCQHNGQVFSREQLLEKVWG- 178 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D A V++H+ +R KL + + +GY + Sbjct: 179 YDYAGSTRTVDTHVKTMRLKLGESGN--YIQTVWGVGYKFEV 218 >gi|28897343|ref|NP_796948.1| DNA-binding response regulator PhoB [Vibrio parahaemolyticus RIMD 2210633] gi|153838075|ref|ZP_01990742.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio parahaemolyticus AQ3810] gi|260364511|ref|ZP_05777132.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio parahaemolyticus K5030] gi|260876305|ref|ZP_05888660.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio parahaemolyticus AN-5034] gi|260898576|ref|ZP_05907072.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio parahaemolyticus Peru-466] gi|260903268|ref|ZP_05911663.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio parahaemolyticus AQ4037] gi|28805552|dbj|BAC58832.1| DNA-binding response regulator PhoB [Vibrio parahaemolyticus RIMD 2210633] gi|149748542|gb|EDM59401.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio parahaemolyticus AQ3810] gi|308086888|gb|EFO36583.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio parahaemolyticus Peru-466] gi|308092989|gb|EFO42684.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio parahaemolyticus AN-5034] gi|308107972|gb|EFO45512.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio parahaemolyticus AQ4037] gi|308114699|gb|EFO52239.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio parahaemolyticus K5030] gi|328472632|gb|EGF43495.1| DNA-binding response regulator PhoB [Vibrio parahaemolyticus 10329] Length = 229 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 37/222 (16%), Positives = 93/222 (41%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D A +++ + G + + D+ ++ L G G Sbjct: 5 ILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDTAVTKLAEPFPDLVLLDWMLPGGSGINF 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ + +P++ ++ + + + G DD + KP +E++AR+ A+ RR+ Sbjct: 65 IKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIRRVT 124 Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + + +++ E + E ++L + M ++ + ++ Q+ + ++ Sbjct: 125 PTALEDVIDVQGLKLDPVSHRVTANDEAVDMGPTEFKMLHFFMTHQERVYSREQLLNNVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G + VE+ V+ HI +LRK L + + R GY Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALEAAGHDKLIQTVRGAGYRF 225 >gi|329929102|ref|ZP_08282895.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] gi|328936885|gb|EGG33317.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] Length = 232 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 44/228 (19%), Positives = 85/228 (37%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + + + + +G + E + D+ ++ L + Sbjct: 5 ILLVEDDSSIGEMVESYLTMEGFQVVLAKDGEEALERFAERDYDLVLLDMML--PKISGM 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARVA 113 + + IR S VP++ +S G DD + KP E I A Sbjct: 63 DFLKKIREKSHVPVLIVSAKDGEVDKALGLGFGADDYITKPFSMVELTARVKAAIRRVTA 122 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + N + + D G+ L +E +IL+ M N K K I Sbjct: 123 YVIAPPTEQNKIIRVHELEMDLDHLTVTKNGQEIKLTAKELQILKLFMTNPKKVFTKQHI 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 F++++ D +ENV+ H+S+LR K+ + + + +GY + Sbjct: 183 FTSVW-NDDYFGDENVINVHMSRLRDKIEDQPSDPQYIKTLWGIGYRL 229 >gi|298241797|ref|ZP_06965604.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297554851|gb|EFH88715.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 222 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 48/218 (22%), Positives = 90/218 (41%), Gaps = 3/218 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L+DD + +G + E + + ++ G LE Sbjct: 6 LLVDDDQTILSLLKRGLAYEGFEVYTAPDGETGLAATKKYQPHLVLLDI--AMPGLDGLE 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R + + +I ++ + + G DD V KP E++AR+ A+ RR S Sbjct: 64 LCRRLHVLGDIAIIMLTARDDVADKVHALGLGADDYVPKPFSFDELVARMRAVLRRHTGS 123 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 + + R+ G++ L RE +L LM + + + + QI ++G ++ Sbjct: 124 QEMLSYSDLELNQATREVHRDGQLIELTTREYDLLLLLMRHPRQVLTRDQILEQVWG-YN 182 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +E NV+E H+ LR+KL G + + R +GY + Sbjct: 183 ADLETNVLEVHMGHLRQKLEASGGSRVIQTIRGVGYVL 220 >gi|260177202|gb|ACX33925.1| putative two-component regulatory system response regulator [uncultured prokaryote AT5] Length = 234 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 49/225 (21%), Positives = 95/225 (42%), Gaps = 8/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G +E + + L D+ ++ L G + Sbjct: 6 ILIVEDEEALVLLLRYNLEAEGYGVETVARGDEADLLLKERSPDLVILDWML--PGLSGI 63 Query: 62 ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IY 116 EL R +R ++P+I ++ + +G DD + KP E+ ARV A Sbjct: 64 ELCRRLRARAETKRLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELSARVRALLRR 123 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + G + V + + G L E R+LE+LM G+ ++ Q+ + Sbjct: 124 ALPERLADVLSFGDLEVDREKKRVSRAGRSVDLGPTEYRLLEFLMERPGRVFSREQLLNG 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G ++E V+ H+ +LRK L DP+ + R GY++D Sbjct: 184 VWG-SQIYIDERTVDVHVGRLRKALNRGHETDPIRTVRGAGYALD 227 >gi|229029069|ref|ZP_04185168.1| Two-component response regulator [Bacillus cereus AH1271] gi|228732349|gb|EEL83232.1| Two-component response regulator [Bacillus cereus AH1271] Length = 218 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 40/222 (18%), Positives = 83/222 (37%), Gaps = 7/222 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + ++ + G + + + D ++ L Sbjct: 2 LVVDDESDMRQLVGMYLDNFGYEWGEAGNGKEALKKLETDHYDFVVLDIM--MPEMDGLS 59 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRLK 120 + + IR S VP+I ++ ++ G DD + KP E+ + Sbjct: 60 VCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTKQ 119 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + GPI + R E GE L +E +L +L + G+ ++ Q+ ++G Sbjct: 120 EQQEEIQFGPILINEKSRKIEADGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG- 178 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D A V++H+ +R KL + + +GY + Sbjct: 179 YDYAGSTRTVDTHVKTMRLKLGESGN--YIQTVWGVGYKFEV 218 >gi|229175245|ref|ZP_04302760.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus MM3] gi|228608077|gb|EEK65384.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus MM3] Length = 230 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 41/228 (17%), Positives = 92/228 (40%), Gaps = 10/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D +++ +G + + E + D+ ++ L Sbjct: 5 ILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVQAFFKSSFDLVILDIM--MPKLDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115 E+ RIIR S VP++ +S + G DD + KP E+ R + Sbjct: 63 EVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 Y + + + G + + E + L +E IL+ + N+ + K QI++ Sbjct: 123 YSATETTEKMIQIGDLTIDPINFTVEKNEKPLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 ++ + ++NV+ H+ +LR+K+ + + + + +GY ++ Sbjct: 183 LVWNE-EYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLEV 229 >gi|210609810|ref|ZP_03288117.1| hypothetical protein CLONEX_00301 [Clostridium nexile DSM 1787] gi|210152737|gb|EEA83743.1| hypothetical protein CLONEX_00301 [Clostridium nexile DSM 1787] Length = 229 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 43/225 (19%), Positives = 90/225 (40%), Gaps = 10/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD L+ G DG+ ++ E L + D+ ++ L Sbjct: 6 LVVDDEKLIVKGIRFSLMQDGMEVDCAYDGEEALELAKNNEYDLLLLDVML--PKMDGFA 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH------HREILARVAAIY 116 + + IR S VP++ ++ + + G DD + KP + + + R Sbjct: 64 VCQQIRDFSDVPIVMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRTGRK 123 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 V +N +++ + R +Q L +E +LE L N K ++ ++ + Sbjct: 124 EEKTVESNVLVKHDMKIDCESRRVFIQEREINLTAKEFDLLELLAKNPDKVYSREKLLNL 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++G ++ + V+ HI +LR+K+ V +K +GY Sbjct: 184 VWG-YEYPGDARTVDVHIRRLREKIEKHPSDPKYVYTKWGVGYYF 227 >gi|163942589|ref|YP_001647473.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|229014060|ref|ZP_04171184.1| Two component transcriptional regulator, winged helix [Bacillus mycoides DSM 2048] gi|229169596|ref|ZP_04297299.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH621] gi|163864786|gb|ABY45845.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] gi|228613871|gb|EEK70993.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH621] gi|228747316|gb|EEL97195.1| Two component transcriptional regulator, winged helix [Bacillus mycoides DSM 2048] Length = 232 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 52/229 (22%), Positives = 84/229 (36%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD A + D +G + E + + D+ ++ Sbjct: 6 ILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAMHIIQTQPIDLVVLDIM--MPKMDGY 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR +P+I +S S + G DD + KP E++ARV A RR Sbjct: 64 EVTRQIRGKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 123 Query: 122 SNNRAETGPIR--------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 N + + R V GE L +E IL L ++ K + I Sbjct: 124 LNQPKVAENKSALEIGGVAIDPERRTVNVYGEPIELTPKEFDILYVLASHPKKVYSVENI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221 F ++ N V HI LRKKL +K + + +GY+ + Sbjct: 184 FQQVWAEGYYE-SGNTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTFN 231 >gi|149180955|ref|ZP_01859456.1| hypothetical protein BSG1_10961 [Bacillus sp. SG-1] gi|148851239|gb|EDL65388.1| hypothetical protein BSG1_10961 [Bacillus sp. SG-1] Length = 236 Score = 152 bits (384), Expect = 4e-35, Method: Composition-based stats. Identities = 45/229 (19%), Positives = 95/229 (41%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + + + + D+ ++ L + Sbjct: 5 ILVVDDEKPIADILQFNLKKEGYEVHCAYDGDEAVKMAEEIKPDLVLLDIML--PNRDGM 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR ++P+I ++ S + + G DD V KP RE++ARV A RR + Sbjct: 63 EVCREIRKKYEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHQH 122 Query: 122 SNNRAETGPIRV---------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + D +G+ L RE +L YL + G+ + + Sbjct: 123 GAAQQAAEGAKNEIAVGSLVIHPDAYIVSKRGDTIELTHREFELLHYLAKHIGQVMTREH 182 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + ++G +D + V+ + +LR+K+ + + + ++R +GY + Sbjct: 183 LLQTVWG-YDYYGDVRTVDVTVRRLREKIEDNPSHPNWIVTRRGVGYYL 230 >gi|117929039|ref|YP_873590.1| two component transcriptional regulator [Acidothermus cellulolyticus 11B] gi|117649502|gb|ABK53604.1| two component transcriptional regulator, winged helix family [Acidothermus cellulolyticus 11B] Length = 245 Score = 152 bits (384), Expect = 4e-35, Method: Composition-based stats. Identities = 53/224 (23%), Positives = 91/224 (40%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D ++ DDG + S L + DV ++ L Sbjct: 21 ILLIEDDDRIRASMRLALTDDGHEVIEAPSGAAGLELFGAGGADVVLVDLML--PDIDGF 78 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E R +R S VP+I ++ + ++G DD V KP +E+ AR+ A+ RR + Sbjct: 79 ECCRRLRRSSDVPIIMVTARTDTHDVVAGLEAGADDYVTKPFEMKELSARIRALLRRSRS 138 Query: 122 SNNRAETGPIRVF----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + A D GE L R E R+L L + + ++ Q+ + Sbjct: 139 AGGPAGEVIDIQDLEIRPDAGVVRRNGEALHLTRTEFRLLCELASAPDRVYSREQLLERV 198 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYSI 220 +G +D + +V+ H+ +LR K+ + + R LGY I Sbjct: 199 WG-YDYFGDGRIVDVHVRRLRTKIEEDPAHPRILVTVRGLGYKI 241 >gi|228939121|ref|ZP_04101716.1| DNA-binding response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228820544|gb|EEM66574.1| DNA-binding response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326939698|gb|AEA15594.1| two-component response regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 234 Score = 152 bits (384), Expect = 4e-35, Method: Composition-based stats. Identities = 37/222 (16%), Positives = 92/222 (41%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ +G + D+ ++ Sbjct: 14 ILIVDDDPHIRELVSVFLEREGFQTYEAIDGVDALRKMDDVKVDMVILDIM--MPNMDGF 71 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ +R + +P++ ++ + F G DD + KP E++ RV A+ +R ++ Sbjct: 72 DVCFELRKYYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 131 Query: 122 SNNRAETGPIR-VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + +++ + + + LP +E +L L + G+ ++ Q+ I+G Sbjct: 132 TVSQSIQVGNVLLNRKTFEVTSGEQTVMLPLKEFELLFTLGSKSGRTCSREQLIEEIWG- 190 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D E ++ HI++LR+K + + + + R LGY ++ Sbjct: 191 YDFEGNERTLDVHINRLREKFQEEQSKFSIKTIRGLGYRLEV 232 >gi|229062544|ref|ZP_04199856.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH603] gi|228716751|gb|EEL68444.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH603] Length = 232 Score = 152 bits (384), Expect = 4e-35, Method: Composition-based stats. Identities = 52/229 (22%), Positives = 84/229 (36%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD A + D +G + E + + D+ ++ Sbjct: 6 ILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAMHIIQTQPIDLVVLDIM--MPKMDGY 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IRA +P+I +S S + G DD + KP E++ARV A RR Sbjct: 64 EVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 123 Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 N + + R V E L +E IL L ++ K + I Sbjct: 124 LNQPKVAESKSALEIGGVVIDPERRTVNVYDEKIELTPKEFDILYLLASHPKKVYSVENI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221 F ++ N V HI LRKKL +K + + +GY+ + Sbjct: 184 FQQVWAEGYYE-SGNTVMVHIRTLRKKLGEDKRKNKLIKTVWGVGYTFN 231 >gi|24373128|ref|NP_717171.1| phosphate regulon response regulator PhoB [Shewanella oneidensis MR-1] gi|24347327|gb|AAN54615.1|AE015602_1 phosphate regulon response regulator PhoB [Shewanella oneidensis MR-1] Length = 239 Score = 152 bits (384), Expect = 4e-35, Method: Composition-based stats. Identities = 34/224 (15%), Positives = 83/224 (37%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D +++ + G + + L D+ ++ G + Sbjct: 15 ILIVEDELAIREMLTFVMEQHGFTTSAAEDFDSAIALLKEPYPDLILLDWM--FPGGSGI 72 Query: 62 ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIY 116 +L + ++ Q+P+I ++ + + + G DD + KP +E+ + Sbjct: 73 QLAKRLKQDEFTRQIPIIMLTARGEEEDKVKGLEVGADDYITKPFSPKELVARIKAVLRR 132 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + + V V + E R+L + M + + ++ Q+ Sbjct: 133 SAPTRLEETIDVQGLLLDPVSHRVSVGDTVLDMGPTEFRLLHFFMTHPERVYSREQLLDN 192 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + VE+ V+ HI +LRK + + + R GY Sbjct: 193 VWGT-NVYVEDRTVDVHIRRLRKAVEESGHDRLIQTVRGAGYRF 235 >gi|163846454|ref|YP_001634498.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222524229|ref|YP_002568700.1| winged helix family two component transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163667743|gb|ABY34109.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222448108|gb|ACM52374.1| two component transcriptional regulator, winged helix family [Chloroflexus sp. Y-400-fl] Length = 233 Score = 152 bits (384), Expect = 4e-35, Method: Composition-based stats. Identities = 39/225 (17%), Positives = 78/225 (34%), Gaps = 7/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 +++DD + G + L + ++ L G V Sbjct: 5 ILVVDDEPGIVKIARDYLERAGFQVISAGDGPTALRLARQEHPALMVLDLMLPGMDGLDV 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117 R +++P+I ++ L + G DD + KP RE++ARV Sbjct: 65 TRALRQDPLTARLPIIMLTARVEETDRLIGLELGADDYITKPFSPRELVARVRAVLRRSE 124 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + G + + + R GE L E +L L + G+ + Q+ + Sbjct: 125 GSTSPGKQIQIGGLVIDLECRSVRRDGETIELTATEFDLLAVLASAPGRPFTRAQLLDRV 184 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG--FDPVDSKRFLGYSI 220 Y + + +++HI LR+K+ + + +GY Sbjct: 185 YNT-EYTGFDRTIDAHIKNLRRKIEPDSNGPPRLILTVYGVGYKF 228 >gi|291562930|emb|CBL41746.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [butyrate-producing bacterium SS3/4] Length = 236 Score = 152 bits (384), Expect = 4e-35, Method: Composition-based stats. Identities = 45/232 (19%), Positives = 94/232 (40%), Gaps = 15/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + + E + ++ ++ L G Sbjct: 7 ILIVDDDENIAELISLYLMKECYDTKIVGDGESALKEVPVFKPNLILLDLML--PGMDGY 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 ++ R IR SQVP+I +S + + + G DD + KP +E++ARV A+ RR + Sbjct: 65 QVCREIRTTSQVPIIMLSAKGEVFDKVLGLELGADDYMIKPFDSKELVARVKAVLRRYQA 124 Query: 121 ----------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 E + V +G +P +E +L +L ++ + + Sbjct: 125 APVSMSAATKQQGEYVEYPNLIVNLTNYSVLYKGHSVDMPPKELELLYFLASSPNQVFTR 184 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 Q+ I+G ++ + V+ HI +LR+K+R+ + + +GY + Sbjct: 185 EQLLDHIWG-YEYIGDTRTVDVHIKRLREKIRDDENWAL-STVWGIGYKFEV 234 >gi|182437802|ref|YP_001825521.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|239988805|ref|ZP_04709469.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] gi|326778437|ref|ZP_08237702.1| two component transcriptional regulator, winged helix family [Streptomyces cf. griseus XylebKG-1] gi|178466318|dbj|BAG20838.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326658770|gb|EGE43616.1| two component transcriptional regulator, winged helix family [Streptomyces cf. griseus XylebKG-1] Length = 226 Score = 152 bits (384), Expect = 4e-35, Method: Composition-based stats. Identities = 52/224 (23%), Positives = 96/224 (42%), Gaps = 8/224 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D D + +G + + D+ ++ L G E Sbjct: 5 LVVEDEESFSDALSYMLRKEGFEVAIAATGPDGLDEFERNGADLVLLDLML--PGLPGTE 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +R+ S VP+I ++ S + + G DD V KP RE++AR+ A+ RR Sbjct: 63 VCRQLRSRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGEP 122 Query: 123 NNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 GP+R+ D V G LP +E +LE L+ N G+ + + Q+ ++ Sbjct: 123 EEVTPAALEAGPVRMDVDRHVVTVSGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRVW 182 Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 G D + ++ H+ +LR K+ + + + R LGY + Sbjct: 183 GA-DYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFE 225 >gi|228920111|ref|ZP_04083460.1| Two-component response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228839567|gb|EEM84859.1| Two-component response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 218 Score = 152 bits (384), Expect = 4e-35, Method: Composition-based stats. Identities = 40/222 (18%), Positives = 84/222 (37%), Gaps = 7/222 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + ++ + G + + + D ++ L Sbjct: 2 LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIM--MPEMDGLS 59 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRLK 120 + + IR S VP+I ++ ++ G DD + KP E+ + Sbjct: 60 VCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYTKQ 119 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + GPI + R E GE+ L +E +L +L + G+ ++ Q+ ++G Sbjct: 120 EQQEEIQFGPILINEKSRRIEADGELISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG- 178 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D A V++H+ +R KL + + +GY + Sbjct: 179 YDYAGSTRTVDTHVKTMRLKLGESGN--YIQTVWGVGYKFEV 218 >gi|154499728|ref|ZP_02037766.1| hypothetical protein BACCAP_03385 [Bacteroides capillosus ATCC 29799] gi|150271326|gb|EDM98583.1| hypothetical protein BACCAP_03385 [Bacteroides capillosus ATCC 29799] Length = 224 Score = 152 bits (384), Expect = 4e-35, Method: Composition-based stats. Identities = 45/224 (20%), Positives = 91/224 (40%), Gaps = 10/224 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D +++ A D G ++ D+ ++ L Sbjct: 5 ILVIEDEESIRNIIRAFLEDAGYTVFVAGDGLEGVNKFHEKNPDLVLLDLML--PKMNGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 + I+R S+ P+I ++ + L FD+ DD + KP ++ + Sbjct: 63 TVCEILRKESRTPIIMLTALDDDDSQLKGFDALADDYITKPFSMPVVMKHIEAVLRRIEP 122 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + +D +V G L RE IL++L+ N+G+ + + I+ Sbjct: 123 AASEPSVIRYKAHVLDADSFSVQVNGVPVSLTTREFEILKFLLENQGRVFTRDNLLDRIW 182 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D +E ++ +HI +RKKL G D +++ R +GY I+ Sbjct: 183 D-YDYVGDEKIINTHIKNIRKKL----GVDYIETIRGVGYKIEK 221 >gi|42779375|ref|NP_976622.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|42735291|gb|AAS39230.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] Length = 233 Score = 152 bits (384), Expect = 4e-35, Method: Composition-based stats. Identities = 45/230 (19%), Positives = 89/230 (38%), Gaps = 11/230 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ ++G + E L + ++ + Sbjct: 6 ILVVDDEKEIRNLIKIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIM--MPKVDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + +R ++P+I +S + +G DD V KP + E++AR+ + RR Sbjct: 64 HMCMKVREEKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMK 123 Query: 122 SNNRAETG-------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N + +++ V+GE L RE ILE L N G + QI+ Sbjct: 124 MNGFSIQNEDELEIGEMKINISTHKVIVEGEEVKLTPREFSILELLARNPGMVFSAEQIY 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223 ++ +N V HI K+R+K+ + + +GY I+ + Sbjct: 184 EKVWNERSFQ-SDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGYKIEKD 232 >gi|150390092|ref|YP_001320141.1| two component transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149949954|gb|ABR48482.1| two component transcriptional regulator, winged helix family [Alkaliphilus metalliredigens QYMF] Length = 229 Score = 152 bits (384), Expect = 4e-35, Method: Composition-based stats. Identities = 49/225 (21%), Positives = 94/225 (41%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD L+ G DG + + E + D+ ++ L L Sbjct: 5 LLVVDDEPLLVKGLRYSLEQDGYEILSASDGEEALDKFNKGSFDLIILDLML--PKIDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IR SQ P+I ++ T + + G DD + KP + E+ AR+ A+ RR + Sbjct: 63 EVCQTIRQTSQTPIIMLTAKGEDMTKILGLEYGADDYMTKPFNILELKARIKAVLRRAQS 122 Query: 122 SNNRAETGPIRVFSDGRDPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 I + + + GE L +E +L L +N GK ++ + Sbjct: 123 KEGNVGERVIHIDDFKINTMGRKVSIHGEEVNLTAKEFDLLLLLASNHGKVYSREALLEI 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 I+G ++ + V+ H+ +LR+K+ + + +K +GY Sbjct: 183 IWG-YEYFGDLRTVDVHVRRLREKVESNSSQPKYILTKWGVGYYF 226 >gi|75908099|ref|YP_322395.1| two component transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75701824|gb|ABA21500.1| two component transcriptional regulator, winged helix family [Anabaena variabilis ATCC 29413] Length = 242 Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 46/228 (20%), Positives = 90/228 (39%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++ G + E + D+ ++ Sbjct: 8 ILVVDDEASIRRILETRLSMIGYDVVTAGDGEEALETFRKSDPDLVVLDVM--MPKLDGY 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAA 114 + + +R S VP+I ++ + + + G DD V KP +E+ RV Sbjct: 66 GVCQELRKESDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDK 125 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 S+ G I++ ++ R E L E +LE L++ G+ ++++I Sbjct: 126 TGASGIPSSGVIHVGNIKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEAFSRSEIL 185 Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 ++G + V+ VV+ HIS+LR KL + + + + R GY Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLF 233 >gi|323463631|gb|ADX75784.1| heme response regulator HssR [Staphylococcus pseudintermedius ED99] Length = 225 Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 46/218 (21%), Positives = 91/218 (41%), Gaps = 4/218 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + G S E D++ ++ G E Sbjct: 6 LIVDDDPEILNYVATHLQHKGYQAVTVASGEAALEYLEKHTIDIAIVDVM--MDGMDGFE 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L ++ + P+I ++ +L F +G DD V KP E++ R+ A+ RR ++ Sbjct: 64 LCETLKYDYEYPVIMLTARDALSDKERAFLAGTDDYVTKPFEVAELIFRIQAVLRRYQIV 123 Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 T + + +V+ + LP +E +L L+A + + Q+ I+G+ Sbjct: 124 TETLLTLGNLTIDQTQLEVKVETKGMILPHKEFELLSLLVAYPKQVFPREQLIEKIWGI- 182 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 D +E V+ HI +LR +L+ +++ R +GY Sbjct: 183 DYEGDERTVDVHIKRLRARLKKLGANVYIETVRGIGYK 220 >gi|222529476|ref|YP_002573358.1| winged helix family two component transcriptional regulator [Caldicellulosiruptor bescii DSM 6725] gi|222456323|gb|ACM60585.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor bescii DSM 6725] Length = 232 Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 42/229 (18%), Positives = 93/229 (40%), Gaps = 11/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + +G + +S + + D+ ++ + Sbjct: 4 ILIVDDEQHILELLKFNLRKEGYNTFEADSGILALEILKHNKVDLVILDIM--MSDKDGY 61 Query: 62 ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AA 114 E+ + IR + P+I +S + + G DD + KP +E++ RV Sbjct: 62 EVLKEIRFNKDTKNLPVILLSAKSEEIDKILGLELGADDYITKPFSVKELVVRVKALLRR 121 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + ++ + G I V R + + L +E +L+ L+ NRG+ + + I Sbjct: 122 VESLRPEVEDKVKFGDIEVDFSKRTVKKNNQDVSLSFKEFELLKLLIENRGRVLDRDFIL 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222 ++G ++ + V+ HI LR+KL + +++ R +GY + Sbjct: 182 QRVWG-YEFDGDTRTVDVHIRFLRRKLEDDEKNPRYIETVRGVGYRFNE 229 >gi|72383034|ref|YP_292389.1| two component transcriptional regulator [Prochlorococcus marinus str. NATL2A] gi|72002884|gb|AAZ58686.1| two component transcriptional regulator, winged helix family [Prochlorococcus marinus str. NATL2A] Length = 246 Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 48/231 (20%), Positives = 89/231 (38%), Gaps = 16/231 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V + G + E + D+ ++ L Sbjct: 4 ILVVDDEPAVLKVLVTRLNLAGYKVLSAQDGEQALEVFHKEAPDLVVLDVML--PKMDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------------L 109 + R IRA S VP+I ++ ++ + D G DD + KP +E+ Sbjct: 62 AVCRRIRAESCVPIIFLTALEAISERVAGLDLGADDYLAKPFSPKELEARIATILRRVGP 121 Query: 110 ARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 A R + + G + V ++ R GE L E +LE L + G+ V Sbjct: 122 APTIDEPREVPSGQGVMKLGDLVVDTNRRQVSRGGERIGLTYTEFSLLELLFRDPGRVVP 181 Query: 170 KTQIFSAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGY 218 + +I ++G A + VV+ ++++LR KL + + + R +GY Sbjct: 182 RAEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGIGY 232 >gi|332709113|ref|ZP_08429081.1| two component transcriptional regulator, winged helix family [Lyngbya majuscula 3L] gi|332352119|gb|EGJ31691.1| two component transcriptional regulator, winged helix family [Lyngbya majuscula 3L] Length = 242 Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 47/228 (20%), Positives = 93/228 (40%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++ G + E D+ ++ Sbjct: 8 ILVVDDEASIRRILETRLSMIGYEVVTAADGEEALNTFRDTEPDLVVLDVM--MPKLDGY 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 + + +R S +P+I ++ + + + G DD V KP +E+ AR+ ++ RR Sbjct: 66 GVCQELRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRFDK 125 Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 S+ G I++ ++ R E L E +LE L+ G+ ++++I Sbjct: 126 VGAAGIPSSGVIHVGSIKIDTNKRQVYKGDERIRLTGMEFSLLELLVRRSGEPFSRSEIL 185 Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 ++G + V+ VV+ HIS+LR KL + + + + R GY Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLF 233 >gi|225728859|ref|YP_002735123.1| response regulator protein [Streptococcus uberis 0140J] gi|222113533|emb|CAR41322.1| response regulator protein [Streptococcus uberis 0140J] Length = 236 Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 48/232 (20%), Positives = 97/232 (41%), Gaps = 16/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + + + D+ ++ L L Sbjct: 4 ILIVDDEKPISDIIKFNLTKEGYDIVTAFDGKEAVLAFEEEKPDLVILDLML--PEMDGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IR S +P+I +S S + + G DD V KP +RE+LARV A RR + Sbjct: 62 EVAKEIRKTSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTET 121 Query: 122 SN------------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 G +++ D + G+ L RE +L +L + G+ + Sbjct: 122 IESAVAEENASAGSQELTIGNLQILPDAFLAKKYGKEVELTHREFELLHHLANHIGQVMT 181 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + + ++G +D + V+ + +LR+K+ + + + ++R +GY + Sbjct: 182 REHLLETVWG-YDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYM 232 >gi|331090746|ref|ZP_08339593.1| hypothetical protein HMPREF9477_00236 [Lachnospiraceae bacterium 2_1_46FAA] gi|330399854|gb|EGG79513.1| hypothetical protein HMPREF9477_00236 [Lachnospiraceae bacterium 2_1_46FAA] Length = 229 Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 44/225 (19%), Positives = 92/225 (40%), Gaps = 10/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD L+ G DG+ ++ E + D+ ++ L E Sbjct: 6 LVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEALEKAKAQEYDLILLDIML--PKYTGFE 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH------HREILARVAAIY 116 + ++IR S VP++ ++ + + G DD + KP + + + R Sbjct: 64 VCQMIREFSDVPVVMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRTGKS 123 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + K N +++ R V G+ L +E +LE L N K ++ ++ + Sbjct: 124 VKEKEDKNIILKNDMKIDRQSRRVYVDGKEINLTAKEFDLLELLATNPDKVYSREELLNI 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++G ++ + V+ H+ +LR+K+ N V +K +GY Sbjct: 184 VWG-YEYPGDARTVDVHVRRLREKVEPNPSEPKYVYTKWGVGYYF 227 >gi|221312018|ref|ZP_03593865.1| hypothetical protein Bsubs1_21806 [Bacillus subtilis subsp. subtilis str. 168] gi|221316343|ref|ZP_03598148.1| hypothetical protein BsubsN3_21712 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221321256|ref|ZP_03602550.1| hypothetical protein BsubsJ_21665 [Bacillus subtilis subsp. subtilis str. JH642] gi|221325539|ref|ZP_03606833.1| hypothetical protein BsubsS_21821 [Bacillus subtilis subsp. subtilis str. SMY] gi|296329976|ref|ZP_06872460.1| two-component response regulator (YycG) [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305676701|ref|YP_003868373.1| two-component response regulator [Bacillus subtilis subsp. spizizenii str. W23] gi|321313602|ref|YP_004205889.1| two-component response regulator [Bacillus subtilis BSn5] gi|291486678|dbj|BAI87753.1| hypothetical protein BSNT_06200 [Bacillus subtilis subsp. natto BEST195] gi|296153015|gb|EFG93880.1| two-component response regulator (YycG) [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305414945|gb|ADM40064.1| two-component response regulator (paired with YycG) [Bacillus subtilis subsp. spizizenii str. W23] gi|320019876|gb|ADV94862.1| two-component response regulator [Bacillus subtilis BSn5] Length = 236 Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 41/228 (17%), Positives = 93/228 (40%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + + + + D+ ++ L + + Sbjct: 6 ILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEELQPDLILLDIML--PNKDGV 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR--------EILARVA 113 E+ R +R +P+I ++ S + + G DD V KP R + ++ Sbjct: 64 EVCREVRKKYDMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLRRQLT 123 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + S+N G + +F D + E L RE +L YL + G+ + + + Sbjct: 124 TAPAEEEPSSNEIHIGSLVIFPDAYVVSKRDETIELTHREFELLHYLAKHIGQVMTREHL 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++G +D + V+ + +LR+K+ + + + ++R +GY + Sbjct: 184 LQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPNWIVTRRGVGYYL 230 >gi|218289692|ref|ZP_03493900.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius LAA1] gi|218240149|gb|EED07333.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius LAA1] Length = 239 Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 49/231 (21%), Positives = 100/231 (43%), Gaps = 16/231 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA--REDVSAIEAFLIGKGEKV 60 +++DD A ++ F G +E + + D+ ++ L G Sbjct: 5 LVVDDEASIRTLVEYNFSRSGFDVETVDDGRVAYEKLKQGASKYDLVVLDLML--PGMDG 62 Query: 61 LELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LE+ R +R ++P+I ++ + + G DD V KP RE++AR A+ RR Sbjct: 63 LEVCRRLRQEGVKIPIILLTARDEEVDLVLGLELGADDYVTKPFSPRELVARARAVLRRT 122 Query: 120 KVSNNRAETG---------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + + A+ I + + V+G++ +E +L+Y M N +++ Sbjct: 123 ESREDDAQPTSSGKVLRAGNIVMDVARHEVRVRGQLVEFTPKEFELLQYFMENPEHVLSR 182 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 Q+ ++G + A + +V+ H+S LR+K+ + + + R +GY Sbjct: 183 DQLLDRVWG-YSAATDTRIVDVHVSHLREKIEDDSKNPKYIRTVRGIGYKF 232 >gi|257469148|ref|ZP_05633242.1| two-component response regulator [Fusobacterium ulcerans ATCC 49185] gi|317063395|ref|ZP_07927880.1| two-component system response regulator [Fusobacterium ulcerans ATCC 49185] gi|313689071|gb|EFS25906.1| two-component system response regulator [Fusobacterium ulcerans ATCC 49185] Length = 220 Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 40/222 (18%), Positives = 94/222 (42%), Gaps = 9/222 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D +++ G + E + D+ ++ L + Sbjct: 4 ILIVEDEKEIRNILKVYLLTAGYEVTESADGEEAMKIFYEKPFDLVILDIML--PKKDGW 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119 + R I+ +S VP+I I+ + + F+ G DD + KP ++ + + + Sbjct: 62 SICREIKEYSSVPVIIITARDNENDEVFGFEIGADDYITKPFSNKVFLARVKTVLKNKTI 121 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++N E G +++ +G+ L +E IL Y + N+ +++ ++ + I+G Sbjct: 122 VNNSNEIEVGKLKINDVSHSVSKEGKNLDLAPKEYEILMYFIKNKNIALSREKMLTEIWG 181 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + ++ HI LRKK+ G + + + R +GY + Sbjct: 182 -YGFVGNDRTIDVHIKNLRKKI----GGEYIKTIRSVGYKFE 218 >gi|118589317|ref|ZP_01546723.1| phosphate regulon transcriptional regulatory protein [Stappia aggregata IAM 12614] gi|118438017|gb|EAV44652.1| phosphate regulon transcriptional regulatory protein [Stappia aggregata IAM 12614] Length = 233 Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 53/224 (23%), Positives = 94/224 (41%), Gaps = 8/224 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + +G S+E + E + D+ ++ L G +E Sbjct: 5 LIVEDEEPLSLLLRYNLEAEGYSVESCVRGDEAEIRLRESLPDLLLLDWML--PGLSGIE 62 Query: 63 LPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L R +RA P+I ++ + +G DD V KP E++ARV AI RR Sbjct: 63 LCRRLRAREDTERLPVIMLTARGEEAERIRGLSTGADDYVVKPFSVPELMARVRAILRRA 122 Query: 120 KVSNNRAETGPIRV--FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + + L E R+LE+LM + G+ ++ Q+ + Sbjct: 123 SPEVVSTMLRSGDIELDRETHRVRRNAKEIHLGPTEFRLLEFLMTSPGRVFSREQLLDGV 182 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +G D V+E V+ H+ +LRK L DP+ + R GY+ + Sbjct: 183 WG-HDVYVDERTVDVHVGRLRKALNKGKAKDPIRTVRGAGYAFN 225 >gi|302542579|ref|ZP_07294921.1| transcriptional regulatory protein CseB [Streptomyces hygroscopicus ATCC 53653] gi|302460197|gb|EFL23290.1| transcriptional regulatory protein CseB [Streptomyces himastatinicus ATCC 53653] Length = 246 Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 47/228 (20%), Positives = 95/228 (41%), Gaps = 15/228 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + D A +G ++ + + D+ ++ L G L Sbjct: 22 ILVVEDDPTIVDAIAARLRAEGFQVQTAADGPAAVDTAEAWQPDLLVLDVML--PGFDGL 79 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R ++A VP++ ++ L G DD + KP RE+ ARV + RR++ Sbjct: 80 EVCRRVQARRPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMREVAARVHVLLRRVER 139 Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + A T + R V+G L E +L L + +++ Q+ Sbjct: 140 AALAANTPRSGILRLGELEIDHAQRRVRVRGSDVHLTPTEFDLLVCLANSPRAVLSREQL 199 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + ++ D + V+SHI LR+K+ G + + + +GY+++ Sbjct: 200 LAEVWDWADASG-TRTVDSHIKALRRKI----GAERIRTVHGVGYALE 242 >gi|302559955|ref|ZP_07312297.1| DNA-binding response regulator RegX3 [Streptomyces griseoflavus Tu4000] gi|302477573|gb|EFL40666.1| DNA-binding response regulator RegX3 [Streptomyces griseoflavus Tu4000] Length = 226 Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 52/224 (23%), Positives = 95/224 (42%), Gaps = 8/224 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D D + +G + + D+ ++ L G E Sbjct: 5 LVVEDEESFSDALSYMLRKEGFEVAVATTGPDGLDEFERNGADLVLLDLML--PGLPGTE 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +R S VP+I ++ S + + G DD V KP RE++AR+ A+ RR Sbjct: 63 VCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGEP 122 Query: 123 NNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 GP+R+ D V G LP +E +LE L+ N G+ + + Q+ ++ Sbjct: 123 EEVTPAALEAGPVRMDVDRHVVTVGGTKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRVW 182 Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 G D + ++ H+ +LR K+ + + + R LGY + Sbjct: 183 GA-DYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFE 225 >gi|194476927|ref|YP_002049106.1| two component transcriptional regulator, winged helix family protein [Paulinella chromatophora] gi|171191934|gb|ACB42896.1| two component transcriptional regulator, winged helix family protein [Paulinella chromatophora] Length = 268 Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 53/230 (23%), Positives = 94/230 (40%), Gaps = 16/230 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD V+ + G + E + + D+ ++ L Sbjct: 27 LIVDDEPAVRRVLVTRLQLVGYRVICAEDGEEALTIFHQDQPDLIVLDVML--PKLDGFA 84 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +RA S VP+I +S ++ + D G DD + KP +E+ AR+A I RR+ Sbjct: 85 VCRRLRAESCVPIIFLSALDTISERVAGLDLGADDYLPKPFSPKELEARIATILRRVGRG 144 Query: 123 NNRAETGPIR------------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + AE I V ++ R G L E +LE L G+ V + Sbjct: 145 SATAEPCDIPAGQGVLRVGDLVVDTNRRQVTRGGNRIALTYTEFSLLELLFREPGRVVPR 204 Query: 171 TQIFSAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGY 218 +I ++G A + VV+ ++++LR KL + + + R GY Sbjct: 205 AEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGTGY 254 >gi|293394940|ref|ZP_06639230.1| DNA-binding response regulator [Serratia odorifera DSM 4582] gi|291422691|gb|EFE95930.1| DNA-binding response regulator [Serratia odorifera DSM 4582] Length = 238 Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 44/222 (19%), Positives = 88/222 (39%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G + + + ++ L G L Sbjct: 10 IMIVEDEPKLGQLLVDYLQAAGYATRWLTNGSEVVAAVHQQPPALILLDLML--PGSDGL 67 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R +R +++P++ ++ L + G DD + KP RE++ARV I RR Sbjct: 68 SVCRELRRFTELPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCYR 127 Query: 122 SNNRAETGP-IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + + QG+V L E R+L+ L + G ++ Q+ + +Y Sbjct: 128 PAESQQEDALLHIDEPRFQASYQGQVLDLTPAEFRLLKTLASQPGNVFSREQLLNNLYDD 187 Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + V + ++SHI LR+KL + S +GY + Sbjct: 188 Y-RVVTDRTIDSHIKNLRRKLEALDGEKAFIRSVYGVGYRWE 228 >gi|257870078|ref|ZP_05649731.1| transcriptional regulator [Enterococcus gallinarum EG2] gi|257804242|gb|EEV33064.1| transcriptional regulator [Enterococcus gallinarum EG2] Length = 234 Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 50/228 (21%), Positives = 96/228 (42%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + E + D+ ++ L L Sbjct: 4 ILVVDDEKPISDIVKFNLTKEGYEVYTAYDGEEALEKVAEIEPDLILLDLML--PKMDGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R + +P+I ++ S + + G DD V KP +RE++ARV A RR Sbjct: 62 EVAREVRKNHDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRGSA 121 Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 S AE P + D GE L RE ++ YL + G+ + + + Sbjct: 122 SAKEAEEAPNAELTIGDLTIHPDAYMVTKNGEAIELTHREFELMHYLAKHLGQVMTREHL 181 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++G +D + V+ + +LR+K+ + + + ++R +GY + Sbjct: 182 LQTVWG-YDYFGDVRTVDVTVRRLREKIEDSPSHPNYLVTRRGVGYYL 228 >gi|30022918|ref|NP_834549.1| two-component response regulator vanR [Bacillus cereus ATCC 14579] gi|229130133|ref|ZP_04259094.1| Two component transcriptional regulator, winged helix [Bacillus cereus BDRD-Cer4] gi|229147425|ref|ZP_04275774.1| Two component transcriptional regulator, winged helix [Bacillus cereus BDRD-ST24] gi|296505317|ref|YP_003667017.1| two-component response regulator vanR [Bacillus thuringiensis BMB171] gi|29898477|gb|AAP11750.1| Two-component response regulator vanR [Bacillus cereus ATCC 14579] gi|228636107|gb|EEK92588.1| Two component transcriptional regulator, winged helix [Bacillus cereus BDRD-ST24] gi|228653348|gb|EEL09225.1| Two component transcriptional regulator, winged helix [Bacillus cereus BDRD-Cer4] gi|296326369|gb|ADH09297.1| two-component response regulator vanR [Bacillus thuringiensis BMB171] Length = 232 Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 52/229 (22%), Positives = 84/229 (36%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD A + D +G + E + + D+ ++ Sbjct: 6 ILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVILDIM--MPKMDGY 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR +P+I +S S + G DD + KP E++ARV A RR Sbjct: 64 EVTRQIRTKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFFT 123 Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 N + + R +V GE L +E IL L ++ K I Sbjct: 124 LNQPKVAESKSALELGGVVINPERRTVDVYGEQIELTPKEFDILYLLASHPKKVYNVENI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221 F ++ N V HI LRKKL +K + + +GY+ + Sbjct: 184 FQHVWADDYYEGG-NTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTFN 231 >gi|51891553|ref|YP_074244.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] gi|51855242|dbj|BAD39400.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] Length = 228 Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 43/224 (19%), Positives = 93/224 (41%), Gaps = 9/224 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + +G + NS +++ D+ ++ LE Sbjct: 6 LVVDDDPKITAFLRRSLTLEGYDVAVANSGTEALRSVTASPPDLMVLDIM--MPDVDGLE 63 Query: 63 LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R IRA P++ ++ ++ + D G DD + KP E+LAR+ A+ RR Sbjct: 64 VCRRIRAAGETFPILMLTARDAVSDRVKGLDQGADDYLVKPFALEELLARLRALSRRGAP 123 Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + ++ + R+ L +E +L +++ + + + + Sbjct: 124 AQGEDGHRVLQYADLRLDTATREAYRGDRQISLTAKEYELLHLFLSHPRQVLTRDTLMEK 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G +D + E NV+E +++ LR KL + + R +GY + Sbjct: 184 VWG-YDYSGESNVLEVYVAYLRNKLEAGGEPRLIQTVRGVGYVL 226 >gi|52143461|ref|YP_083367.1| response regulator [Bacillus cereus E33L] gi|51976930|gb|AAU18480.1| response regulator [Bacillus cereus E33L] Length = 254 Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 36/222 (16%), Positives = 94/222 (42%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ +G + + D+ ++ Sbjct: 34 ILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINEVKVDMVILDIM--MPNMDGF 91 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ +R + +P++ ++ + F G DD + KP E++ RV A+ +R ++ Sbjct: 92 DVCFELRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 151 Query: 122 SNNRAETGPIR-VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + +++ + + + + LP +E +L L + G+ ++ Q+ ++G Sbjct: 152 TVSQSIQVGTVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG- 210 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D E ++ HI++LR+K + + + + R LGY ++ Sbjct: 211 YDFEGNERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLEV 252 >gi|68536618|ref|YP_251323.1| two-component system response regulator TcsR5 [Corynebacterium jeikeium K411] gi|68264217|emb|CAI37705.1| two-component system response regulator TcsR5 [Corynebacterium jeikeium K411] Length = 231 Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 46/227 (20%), Positives = 94/227 (41%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V++ +G ++ E L + R D++ ++ + L Sbjct: 3 ILVVDDDQAVRESLRRSLIFNGYTVILATDGEEALKLIAEERPDLAILDVM--MPKKDGL 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARVA 113 ++ R +R+H P++ ++ S++ + D+G DD + KP R + R A Sbjct: 61 DVCRELRSHGDDLPILLLTARDSVEERVAGLDAGADDYLPKPFALEELLARTRSLFRRAA 120 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + + + + RD L R E +LE LM N K +++ I Sbjct: 121 RPAIQEGETREPLRFEDLTLNPETRDVFRGDRQISLTRTEFALLELLMNNPRKVLSRNTI 180 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G +D N +E +I LR+K + + R +GY++ Sbjct: 181 LEEVWG-YDFPTSGNALEVYIGYLRRKTEANNETRLIHTVRGVGYAL 226 >gi|253573667|ref|ZP_04851010.1| two-component system response regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251847195|gb|EES75200.1| two-component system response regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 234 Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 39/232 (16%), Positives = 77/232 (33%), Gaps = 15/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + ++G + + D+ ++ L G + Sbjct: 5 ILIVDDDEKIAKLIEIYLMNEGYHVLKAEDGLRALEITEQDEVDLVILDVML--PGLDGI 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----------REILA 110 + IR P++ +S + +G DD + KP + R Sbjct: 63 SVCMKIRESKTTPILMLSAKDGDMDKITGLMTGADDYMVKPFNPLELVARVKSLLRRSSY 122 Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 ++ + + + + V G L E IL L ++ G+ Sbjct: 123 TAQPPSSTQSSQDHIIKIASLAIDKETHTATVDGNPLKLTPIEFGILHLLASHPGRVFGS 182 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221 +IF I+ N V HIS+LR KL + G + + +GY ++ Sbjct: 183 EEIFELIWKDKYLD-SSNSVTVHISRLRDKLEKEMDGEKLIRTVWGVGYKLE 233 >gi|226312203|ref|YP_002772097.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226095151|dbj|BAH43593.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 229 Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 41/224 (18%), Positives = 92/224 (41%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L+DD + + + +G + + + + ++ ++ L Sbjct: 4 ILLVDDEPQILEILSSYLQKEGYHVLTAQTGKEAVEMATTISLTCIILDLML--PDLSGE 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ IR S+VP++ ++ + G DD + KP RE++ARV A+ RR Sbjct: 62 EVCVQIRKESRVPILMLTAKSGEADRIRGLTIGADDYLIKPFSPRELVARVRAVMRRAGD 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF---PLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + ++ + + + + + + E R+L L+ G+ + ++ + Sbjct: 122 YSTLSDFVEVGDLTISMNEKRVTKNGVALEVTPNEYRLLTTLVRYPGRTWGREELVREVM 181 Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 G FD + +++HI LR+K+ + + + + LGY D Sbjct: 182 G-FDFEGYDRTIDTHIKNLRQKIEADPKQPEYIKTVYGLGYRFD 224 >gi|308175054|ref|YP_003921759.1| transcriptional regulatory protein YvrHb [Bacillus amyloliquefaciens DSM 7] gi|307607918|emb|CBI44289.1| Transcriptional regulatory protein YvrHb [Bacillus amyloliquefaciens DSM 7] gi|328555023|gb|AEB25515.1| Transcriptional regulatory protein YvrHb [Bacillus amyloliquefaciens TA208] gi|328913378|gb|AEB64974.1| Transcriptional regulatory protein YvrHb [Bacillus amyloliquefaciens LL3] Length = 239 Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 45/226 (19%), Positives = 86/226 (38%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +++DD + D + +G ++ S E D+ ++ +G Sbjct: 6 ILIVDDEKAIVDMVKRVLVKEGYHNIKTAGSAEEAIEFVKHETADLLVLDVM--MEGMSG 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E IR ++ P+ ++ S L F G DD + KP + E+ AR+ A +R Sbjct: 64 FEACTEIRNYTDAPIFFLTARSSDADKLSGFALGADDYITKPFNPLELAARIRATLKRTY 123 Query: 121 VSNNRAETGPIRVFSDGRDPEVQG-----EVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + P+ E + ++L+Y + ++K QI+ Sbjct: 124 KREEKTAVKTYSYSHFSYSPQNAELIVGGEPVSCSAQLLQLLQYFCEHPDVVLSKDQIYE 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++G + + N V HI KLR+K+ + + + R LGY Sbjct: 184 KVWG-YPSYGDNNTVMVHIRKLREKIEKDPSDPSYIVTVRGLGYRF 228 >gi|115526874|ref|YP_783785.1| two component transcriptional regulator [Rhodopseudomonas palustris BisA53] gi|115520821|gb|ABJ08805.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris BisA53] Length = 234 Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 50/225 (22%), Positives = 93/225 (41%), Gaps = 8/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G +E + + D+ ++ L G + Sbjct: 5 ILVVEDEEALSTLLRYNLDAEGYDVETVARGDDADTRLKERTPDLVVLDWML--PGLSGI 62 Query: 62 ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IY 116 EL R +RA + P+I ++ + +G DD + KP E+LARV Sbjct: 63 ELCRRLRARPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLLRR 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + G + + D R G L E R+LE+ + + G+ ++ Q+ Sbjct: 123 AAPERLATVLTYGDLELDRDKRRVARSGRPIDLGPTEYRLLEFFLEHPGRVFSREQLLDG 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G D ++E V+ HI +LRK L DP+ + R GY++D Sbjct: 183 VWGR-DIYIDERTVDVHIGRLRKLLNPGREQDPIRTVRGAGYALD 226 >gi|260436657|ref|ZP_05790627.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Synechococcus sp. WH 8109] gi|260414531|gb|EEX07827.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Synechococcus sp. WH 8109] Length = 272 Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 91/228 (39%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++ G ++ L + D+ ++ Sbjct: 35 ILVVDDEASIRRILETRLSMIGYNVVTACDGTEALELFPTCTPDLVVLDVM--MPKLDGY 92 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + +R S VP++ ++ + + + G DD V KP +E+ AR+ + RR++ Sbjct: 93 GVCQELRKESDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRVEK 152 Query: 122 SNNRAETGPI-------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 R+ ++ R E L E +LE L++ G+ + +I Sbjct: 153 EQVAGIPNSGVIQVSDLRIDTNKRQVFRGDERIRLTGMEFSLLELLVSRSGEPFNRGEIL 212 Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 ++G + V+ VV+ HIS+LR KL + + + + R GY Sbjct: 213 KEVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGYLF 260 >gi|49481182|ref|YP_036122.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49332738|gb|AAT63384.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 254 Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 36/222 (16%), Positives = 96/222 (43%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ +G + + + D+ ++ Sbjct: 34 ILIVDDDPHIRELVSVFLEREGFQIYEAIDGLDALQKMNEVKVDMVILDIM--MPNMDGF 91 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ +R + ++P++ ++ + F G DD + KP E++ RV A+ +R ++ Sbjct: 92 DVCFELRKYYEIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 151 Query: 122 SNNRAETGPIR-VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + +++ + + + + LP +E +L L + G+ ++ Q+ ++G Sbjct: 152 TVSQSIQVGTVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG- 210 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D E ++ HI++LR+K + + + + R LGY ++ Sbjct: 211 YDFEGNERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLEV 252 >gi|163848921|ref|YP_001636965.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|163670210|gb|ABY36576.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] Length = 234 Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 53/227 (23%), Positives = 94/227 (41%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D + ++G + L S + D+ ++ L G + Sbjct: 6 ILVVDDEQPIVDLVSSYLTNEGFVVHRAYDGPGALALARSVKPDLVVLDVML--PGLDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R + + V ++ ++ L G DD + KP RE++ARV AI RR +V Sbjct: 64 EVCRQLHRDTSVFVLMLTARADEIDKLIGLSVGADDYLTKPFSPRELVARVKAILRRNRV 123 Query: 122 SNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + R+ E G L RE +L L + G+ + ++ Sbjct: 124 IRAIEVNQRPILQFEGLLIDPERREVERNGVRVDLTPREFDLLYALASYPGRVFTREELL 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220 ++G D A + VV+ HI LR+KL + G V + R +GY Sbjct: 184 QRVWG-PDFAGIDWVVDVHIGTLRRKLDDDHHGTPLVQTVRGVGYKF 229 >gi|229102995|ref|ZP_04233684.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock3-28] gi|228680410|gb|EEL34598.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock3-28] Length = 237 Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 43/231 (18%), Positives = 89/231 (38%), Gaps = 12/231 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D +++ + + + L + R D+ ++ + Sbjct: 5 ILIVEDEENIREVCKRYLEREEYEVYTAVNGREGWDLFLTHRPDLIILDLM--MPKKDGW 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL IR S VP+I ++ + + G DD + KP RE++ RV I RR Sbjct: 63 ELCEEIRQQSNVPIIMLTAKGEERDRILGLTMGADDYLTKPFSPRELVLRVQIILRRGSH 122 Query: 122 SNNR--------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + E ++++ R V + L +E +L + + + +++Q+ Sbjct: 123 VPIQAEESLLEVIEFPDLKIYPKTRYVLVCDKEVELTVKEFEVLYLMAKHPKQVFSRSQL 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223 I+ F N V +S+LR+KL + + +GY + N Sbjct: 183 LELIWD-FGHEGASNTVTVLVSRLREKLEKHTIKNRWIHTVWGIGYRFEPN 232 >gi|124024341|ref|YP_001018648.1| two-component response regulator [Prochlorococcus marinus str. MIT 9303] gi|123964627|gb|ABM79383.1| two-component response regulator [Prochlorococcus marinus str. MIT 9303] Length = 248 Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 46/228 (20%), Positives = 92/228 (40%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++ G + L + D+ ++ Sbjct: 11 ILVVDDEASIRRILETRLSMIGYQVVTACDGNEALDLFHNCEPDLVVLDVM--MPKLDGY 68 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + +R S VP++ ++ + + + G DD V KP +E+ AR+ + RR++ Sbjct: 69 GVCQELRKESDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRVEK 128 Query: 122 SNNRAETGPI-------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + RV ++ R E L E +LE L++ G+ ++ +I Sbjct: 129 EHVAGIPNSGVIQVAELRVDTNKRQVFRGDERIRLTGMEFSLLELLVSRSGEPFSRGEIL 188 Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 ++G + V+ VV+ HIS+LR KL + + + + R GY Sbjct: 189 KEVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGYLF 236 >gi|30260446|ref|NP_842823.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47525530|ref|YP_016879.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49183288|ref|YP_026540.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|52144971|ref|YP_081859.1| response regulator [Bacillus cereus E33L] gi|118476026|ref|YP_893177.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|165873352|ref|ZP_02217952.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167634226|ref|ZP_02392548.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|167640090|ref|ZP_02398357.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170687705|ref|ZP_02878920.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|170709229|ref|ZP_02899651.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|177655756|ref|ZP_02937031.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190567377|ref|ZP_03020291.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|196041101|ref|ZP_03108397.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|196046240|ref|ZP_03113467.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|227812937|ref|YP_002812946.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228925516|ref|ZP_04088608.1| Two-component response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228931762|ref|ZP_04094662.1| Two-component response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228944068|ref|ZP_04106450.1| Two-component response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229119926|ref|ZP_04249183.1| Two-component response regulator [Bacillus cereus 95/8201] gi|229182659|ref|ZP_04309903.1| Two-component response regulator [Bacillus cereus BGSC 6E1] gi|229600613|ref|YP_002864895.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|254686665|ref|ZP_05150523.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254724733|ref|ZP_05186516.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254735437|ref|ZP_05193145.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254744181|ref|ZP_05201863.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254756033|ref|ZP_05208064.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|254761683|ref|ZP_05213701.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|30253767|gb|AAP24309.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47500678|gb|AAT29354.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49177215|gb|AAT52591.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|51978440|gb|AAU19990.1| response regulator [Bacillus cereus E33L] gi|118415251|gb|ABK83670.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|164710909|gb|EDR16486.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167511901|gb|EDR87280.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|167530540|gb|EDR93255.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170125862|gb|EDS94767.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|170668232|gb|EDT18980.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|172079985|gb|EDT65087.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190561504|gb|EDV15475.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|196022985|gb|EDX61665.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|196028036|gb|EDX66647.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|227003315|gb|ACP13058.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228600828|gb|EEK58404.1| Two-component response regulator [Bacillus cereus BGSC 6E1] gi|228663540|gb|EEL19123.1| Two-component response regulator [Bacillus cereus 95/8201] gi|228815618|gb|EEM61857.1| Two-component response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228827911|gb|EEM73645.1| Two-component response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228834154|gb|EEM79699.1| Two-component response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229265021|gb|ACQ46658.1| DNA-binding response regulator [Bacillus anthracis str. A0248] Length = 233 Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 47/230 (20%), Positives = 89/230 (38%), Gaps = 11/230 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ ++G + E L + ++ + Sbjct: 6 ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIM--MPKVDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + IR ++P+I +S + +G DD V KP + E++AR+ + RR Sbjct: 64 HMCMKIREEKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMK 123 Query: 122 SNNRAETG-------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N A +++ V+GE L RE ILE L N G + QI+ Sbjct: 124 MNGFAIQNEDELEIGEMKINISTHKVIVEGEEVKLTPREFSILELLARNPGMVFSAEQIY 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223 ++ +N V HI K+R+K+ + + +GY I+ + Sbjct: 184 EKVWNERSFQ-SDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGYKIEKD 232 >gi|317970310|ref|ZP_07971700.1| two component transcriptional regulator [Synechococcus sp. CB0205] Length = 234 Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 39/224 (17%), Positives = 87/224 (38%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D +++ +G S+ + + ++ ++ L G L Sbjct: 13 LLVVEDDDTIRETVCEALELEGFSVTPATNGQSAWDRLKRDPFELIVLDVML--PGINGL 70 Query: 62 ELPRIIRAHSQVP-LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYR 117 +L R + Q P ++ +S + + + G DD + KP RE + ++ Sbjct: 71 DLCRKLIELPQRPLVLMVSARDTETDRVLGLELGADDYLVKPFGIRELVARCRALLRRHQ 130 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + + +F + G L +E ++LE M N + ++ Q+ + Sbjct: 131 ASDQQPSELKADNLSLFPAECRVCLDGLELKLSPKEFKLLELFMQNPKRVWSREQLIEQV 190 Query: 178 YGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220 +G FD + V+ HI LR+K+ + + + R GY Sbjct: 191 WG-FDYIGDNKTVDVHIRWLREKIEEDPSNPSKLVTVRGFGYRF 233 >gi|256389697|ref|YP_003111261.1| two component transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256355923|gb|ACU69420.1| two component transcriptional regulator, winged helix family [Catenulispora acidiphila DSM 44928] Length = 223 Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 52/220 (23%), Positives = 93/220 (42%), Gaps = 4/220 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V+ DG + + R D ++ + L Sbjct: 3 ILVVDDDPAVRRSLEHALRRDGYDVVSVADGTSALAEHVAFRPDAVVLDILMPEP--NGL 60 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +R A P++ ++ + + D+G DD + KP E+ AR+ A+ RR Sbjct: 61 EVCRALRSAGDDTPILMLTARDLVTDRVAGLDAGADDYLAKPFALEELRARLRALLRRSG 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + +R+ G E G L + E +LE + N +++TQIF +++G Sbjct: 121 AQSEVLTFADVRLDLSGWRVERGGRRLELTKTELSLLELFLRNPQHVLSRTQIFESVWG- 179 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D + N + +IS LR KL G + + R LGY + Sbjct: 180 YDFGPQSNALWVYISYLRGKLEADGGARLIQTVRGLGYVL 219 >gi|213966092|ref|ZP_03394280.1| two-component system response regulator TcsR5 [Corynebacterium amycolatum SK46] gi|213951290|gb|EEB62684.1| two-component system response regulator TcsR5 [Corynebacterium amycolatum SK46] Length = 230 Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 47/226 (20%), Positives = 98/226 (43%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V++ +G ++E + R D++ ++ L Sbjct: 3 ILVVDDDQAVREALRRSLTFNGYTVELAEDGAEALEKIAKDRPDLAILDVM--MPKLDGL 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ R +R+ P++ ++ S+ + D+G DD + KP E+LARV ++ RR Sbjct: 61 DVCRRLRSEGDDLPVMMLTARDSVSERVAGLDAGADDYLPKPFALEELLARVRSLLRRSA 120 Query: 121 VSNNRA------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + + + + R+ L R E +LE LM+N + +++T I Sbjct: 121 LEVPAMEDAATLQFEDLSLDPETREVFRGERRISLTRTEFALLELLMSNPRRVLSRTAIL 180 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G +D N +E +I LR+K + + + R +GY + Sbjct: 181 EDVWG-YDFPTSGNALEVYIGYLRRKTEAEGEPRLIHTVRGVGYVM 225 >gi|153941052|ref|YP_001391293.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|152936948|gb|ABS42446.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|295319325|gb|ADF99702.1| DNA-binding response regulator [Clostridium botulinum F str. 230613] Length = 221 Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 95/224 (42%), Gaps = 10/224 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + + G +E + D+ ++ L Sbjct: 5 ILVVEDDFDIHTIISEVLKESGYLVEVATDGLIAVEMFRRGNFDLIILDVML--PKIDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 + IIR S VP+I ++ + + F+ VDD + KP ++ RV Sbjct: 63 VVCEIIRKESSVPIIMLTALGEEEDEMKGFELKVDDYITKPFSINLLIKRVEAVLRRANG 122 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 L+ +N+ I ++ V + L +E +ILE L++N G+ ++ + + I+ Sbjct: 123 LEENNSTLTFEEITIYPSNYKTLVNNKEIELTYKEFQILEILISNAGRVFSRESLLNQIW 182 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 G +D + V+++HI LR+KL D + + R +GY I+ Sbjct: 183 G-YDYFGDTRVIDTHIKNLRQKL----NIDYIKTIRGVGYKIEK 221 >gi|150021704|ref|YP_001307058.1| two component transcriptional regulator [Thermosipho melanesiensis BI429] gi|149794225|gb|ABR31673.1| two component transcriptional regulator, winged helix family [Thermosipho melanesiensis BI429] Length = 239 Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 52/230 (22%), Positives = 96/230 (41%), Gaps = 14/230 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD+ + + +G + E D+ ++ L G Sbjct: 6 IMVIDDQPEILELISFTLEKEGYDVIPVEDAEKALEELKDKDVDMFLVDIML--PGIDGF 63 Query: 62 ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 E R IR H P+I +S + + G DD + KP RE+LAR+ A++RR Sbjct: 64 EFVRHIRSLEQHKLTPVIFLSAKGEEFDKVLGLELGADDYITKPFSIRELLARIKAVFRR 123 Query: 119 LKVSNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 +++S E P + + D + +++G+ L E +L +L N GK ++ Sbjct: 124 MQLSTQTKEEKPKKIVAKDLEIDVDKYEVKIKGKKVNLTPLEFDLLRFLAENEGKVFSRN 183 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220 + ++G +D + V+ HI +LR K+ + + + R GY Sbjct: 184 VLLDKLWG-YDYFGDTRTVDVHIRRLRTKIEEDPSNPKYIVTVRGKGYKF 232 >gi|118443383|ref|YP_877594.1| two-component response regulator [Clostridium novyi NT] gi|118133839|gb|ABK60883.1| two-component response regulator [Clostridium novyi NT] Length = 222 Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 42/224 (18%), Positives = 92/224 (41%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D ++ F G S+ + D+ ++ + Sbjct: 3 ILIIEDEERMRKLLKDYFKRSGFSVLEAEDGVKGLKVFKENSVDLVILDIMI--PCLDGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 + + IR +S+VP+I ++ + L ++ G DD V KP + ++A+V Sbjct: 61 TVCKSIRQNSKVPIIMLTAKSEEEDKLLGYELGCDDYVTKPFSPKVLVAKVKALLKRSGI 120 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + N + + + ++ GE+ L +E +L + + N +++ I ++ Sbjct: 121 EEKETNIKNYNGLYINKLSNEVKIHGEIVNLSPKEYDLLIFFVNNIDIVLSRDTILDKVW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 G FD V++H+ +LR+KL+ K + + R GY + Sbjct: 181 G-FDYDGGLRTVDTHVKRLREKLKEKSN--YIVTVRGKGYKFEV 221 >gi|329936182|ref|ZP_08285975.1| putative two-component system response regulator [Streptomyces griseoaurantiacus M045] gi|329304292|gb|EGG48172.1| putative two-component system response regulator [Streptomyces griseoaurantiacus M045] Length = 226 Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 49/224 (21%), Positives = 91/224 (40%), Gaps = 8/224 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D D + +G + + D+ ++ L G E Sbjct: 5 LVVEDEESFSDALSYMLRKEGFEVAVAATGPDGLDEFERNGADLVLLDLML--PGLPGTE 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYRR 118 + R +R S VP+I ++ S + + G DD V KP R I A + Sbjct: 63 VCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGEP 122 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + E GP+R+ D V G LP +E +LE L+ N G+ + + Q+ ++ Sbjct: 123 EEAAPVALEAGPVRMDVDRHVVTVSGAKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRVW 182 Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 G D + ++ H+ +LR K+ + + + R LGY + Sbjct: 183 GA-DYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFE 225 >gi|255526544|ref|ZP_05393453.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296187650|ref|ZP_06856044.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] gi|255509794|gb|EET86125.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296047607|gb|EFG87047.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] Length = 231 Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 42/226 (18%), Positives = 83/226 (36%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + A +G + + E L + ++ L Sbjct: 7 ILVVDDEPNIVEVVEAYLRKEGFQVVTAENGEKALRLFKEEVIHLVILDLML--PRISGE 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL------ARVAAI 115 E+ IRA S VP+I ++ + + G DD + KP RE++ R Sbjct: 65 EICNKIRAVSDVPIIMLTAKSEEEDKISGLAIGADDYLTKPFSVRELVGRVKALIRRTYR 124 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 G + V + GE L E ++L L+ N G+ ++ Q+ Sbjct: 125 DSSPLADYLLFNNGDLEVQIKKMKVKKAGEYVNLTANEFKVLLALLTNPGQVFSREQLVQ 184 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 +G D + ++S+I +R+K+ + + + +GY Sbjct: 185 KAFGE-DYEGFDRTIDSYIKNIRQKIEDNHKEPKYIITVYGIGYKF 229 >gi|146277961|ref|YP_001168120.1| two component transcriptional regulator [Rhodobacter sphaeroides ATCC 17025] gi|145556202|gb|ABP70815.1| two component transcriptional regulator, winged helix family [Rhodobacter sphaeroides ATCC 17025] Length = 230 Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 53/221 (23%), Positives = 95/221 (42%), Gaps = 4/221 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61 +L++D ++ +G + + + L DV ++ L G +V Sbjct: 10 LLVEDEPAQREVLSYNLESEGFRVVQAGTGDEALMLVEETGPDVIVLDWMLPSVSGIEVC 69 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + VP+I +S + ++G DD V KP E++ARV + RR + Sbjct: 70 RQLKSRPSTRSVPIIMLSARSEEVDRVRGLETGADDYVVKPYSVVELMARVRSQLRRARP 129 Query: 122 SNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S+ E IR+ + G++ L E R+L M G+ ++ Q+ ++G Sbjct: 130 SSVGLTLEFEDIRLDPETHKVHRAGQILKLGPTEFRLLSTFMEKPGRVWSREQLLDRVWG 189 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D V+ V+ H+ +LRK L G DPV + R GY++ Sbjct: 190 R-DIYVDSRTVDVHVGRLRKALCVHGGEDPVRTVRGAGYAL 229 >gi|47564778|ref|ZP_00235822.1| DNA-binding response regulator [Bacillus cereus G9241] gi|47558151|gb|EAL16475.1| DNA-binding response regulator [Bacillus cereus G9241] Length = 233 Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 52/229 (22%), Positives = 83/229 (36%), Gaps = 11/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD + + +G + E + S D+ ++ Sbjct: 6 ILIADDDLEIAELIEIHLKKEGYQVVKATDGEDAIEIIQSQAIDLVVLDIM--MPKMDGY 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR +P+I +S S + G DD + KP E++ARV A RR Sbjct: 64 EVTRQIRTKQNMPIIFLSAKTSDFDKVKGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 123 Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 N + + R V GE L +E IL L ++ K + I Sbjct: 124 LNQPKVEEETSVLEAGGVVIDFEKRTVHVYGERIDLTPKEFDILYLLASHPKKVYSLENI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221 F I+ N V HI LRKKL +K + + +GY+ + Sbjct: 184 FQQIWTNDYYDDNNNTVTVHIRTLRKKLGEDKRKNKLIKTIWGVGYTFN 232 >gi|310827229|ref|YP_003959586.1| response regulator [Eubacterium limosum KIST612] gi|308738963|gb|ADO36623.1| response regulator [Eubacterium limosum KIST612] Length = 233 Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 51/229 (22%), Positives = 97/229 (42%), Gaps = 11/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + + G + G + R D+ ++ L G+ L Sbjct: 4 ILIIEDELNIFELIKFNLEAQGFEVAGVHEGTGAVEKIVDIRPDLIILDLML--PGKDGL 61 Query: 62 ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 + R +RA S +P+I ++ + + G DD + KP +E+ ARV A+ RR Sbjct: 62 TICREVRADKNLSYIPVIMLTAKSEEFDKVLGLEMGADDYMTKPFSVKELYARVKAVLRR 121 Query: 119 LKVSNNRAETGPI----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 ++ + R+ + G+ L +E +L YL N+ K + + Q+ Sbjct: 122 TEMIKSSDTEEIAVGSLRILPGSFEVYKNGKKLSLTLKEYELLLYLANNKNKVLTRDQLL 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 I+G ++ E V+ HI LRKK+ + +++ R +GY + N Sbjct: 182 DEIWG-YEYYGETRTVDVHIRYLRKKIEDDQE-KYIETVRGVGYRLVEN 228 >gi|194476778|ref|YP_002048957.1| two-component response regulator [Paulinella chromatophora] gi|171191785|gb|ACB42747.1| two-component response regulator [Paulinella chromatophora] Length = 248 Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 44/228 (19%), Positives = 91/228 (39%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++ A G + + D+ ++ Sbjct: 11 ILIVDDEASIRRILEARLSMIGYQVVTASDGAEALEAFHRCEPDLVVLDVM--MPRLDGY 68 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + +R S VP++ ++ + + + G DD + KP +E+ AR+ + RR++ Sbjct: 69 GVCQELRKESDVPIVMLTALGDVADRITGLELGADDYLIKPFSPKELEARIRCVLRRVEK 128 Query: 122 SNNRAETGPI-------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 R+ ++ R E L E +LE L++ G+ ++ +I Sbjct: 129 DQTAGIPNSGVIQVGDLRIDTNKRQVFRNDERIRLTGMEFSLLELLVSRSGEPFSRGEIL 188 Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 ++G + V+ VV+ HIS+LR KL + + + + R GY Sbjct: 189 KEVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGYLF 236 >gi|229169264|ref|ZP_04296976.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus AH621] gi|228614205|gb|EEK71318.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus AH621] Length = 230 Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 43/228 (18%), Positives = 93/228 (40%), Gaps = 10/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D +++ +G + + E D+ ++ L Sbjct: 5 ILLVEDDISIQEMVETYLVKEGFQVTIASDGEEGVNAFLKGSFDLIILDIM--MPKLDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115 E+ RIIR S VP++ +S + G DD + KP E+ R + Sbjct: 63 EVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 Y + + R + G + + E G+ L +E IL+ + N+ + K QI++ Sbjct: 123 YSATETTEKRIQIGDLTIDPINFTVEKNGKHLKLTLKEFEILKLFLKNQNRVFTKAQIYT 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 ++ + ++NV+ H+ +LR+K+ + + + + +GY ++ Sbjct: 183 LVWNE-EYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLEV 229 >gi|17232219|ref|NP_488767.1| two-component response regulator [Nostoc sp. PCC 7120] gi|17133864|dbj|BAB76426.1| two-component response regulator [Nostoc sp. PCC 7120] Length = 238 Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 36/232 (15%), Positives = 83/232 (35%), Gaps = 15/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + +G S + D+ ++ + G L Sbjct: 3 ILIVEDESEIAQLIQHSLEKEGFSCRTSRDGINALQMFHERPPDLIILDLMI--PGLDGL 60 Query: 62 ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILA 110 E+ IR ++ ++ + +G DD + KP RE + Sbjct: 61 EVCARIRQKPGAKDPYILMLTAKGEEIDRVIGLSTGADDYMVKPFSPRELVARVRALLRR 120 Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + + + + + Q E L E +L ++N G+ + Sbjct: 121 SLRQGGQNQVNRTQHFIVDLDQRTASRQIDSHQPEALDLTTLEFNLLSTFVSNPGRVWNR 180 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 TQ+ ++G + +E VV++H+++LRKK+ + + + +GY + Sbjct: 181 TQLIDKLWG-DNFFGDERVVDTHVARLRKKIEPDPTNPSFIKTVVGVGYKFE 231 >gi|328884011|emb|CCA57250.1| Phosphate regulon transcriptional regulatory protein PhoB [Streptomyces venezuelae ATCC 10712] Length = 226 Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 52/224 (23%), Positives = 95/224 (42%), Gaps = 8/224 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D D + +G + + D+ ++ L G E Sbjct: 5 LVVEDEESFSDALSYMLRKEGFEVAVAATGPDGLDEFERNGADLVLLDLML--PGLPGTE 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +R S VP+I ++ S + + G DD V KP RE++AR+ A+ RR Sbjct: 63 VCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGEP 122 Query: 123 NNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 GP+R+ D V G LP +E +LE L+ N G+ + + Q+ ++ Sbjct: 123 EEVTPAALEAGPVRMDVDRHVVTVAGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRVW 182 Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 G D + ++ H+ +LR K+ + + + R LGY + Sbjct: 183 GA-DYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFE 225 >gi|257062967|ref|YP_003142639.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Slackia heliotrinireducens DSM 20476] gi|256790620|gb|ACV21290.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Slackia heliotrinireducens DSM 20476] Length = 231 Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 46/225 (20%), Positives = 83/225 (36%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L+DD + D G ++ + + + D+ ++ G Sbjct: 8 ILLVDDEQSIIDFVSYNLRKAGYQVDTAENGDVALAMSRHKHYDLYVLDIM--MPGMNGY 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116 EL R +R + P++ +S S + + G DD + KP RE++AR Sbjct: 66 ELCRNLRTRTNAPVLFLSARDSELDKVVGLEIGADDYLAKPFGVRELIARVRALLRRGQM 125 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 ++ G I + E L RE +L LM GK ++ + Sbjct: 126 DAEPMAGESITAGGITLDEARHIAEGPNGSIDLTPREFELLSALMKVAGKVASREDLLRE 185 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 +G ++ E V++HI +LR KL +++ R GY Sbjct: 186 AWG-WEYITETKTVDTHIKRLRDKLAAAGFDPGIIETVRGYGYRF 229 >gi|254382225|ref|ZP_04997586.1| two-component system response regulator [Streptomyces sp. Mg1] gi|194341131|gb|EDX22097.1| two-component system response regulator [Streptomyces sp. Mg1] Length = 227 Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 50/223 (22%), Positives = 93/223 (41%), Gaps = 8/223 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +LI+D +++G G + + E L +S R ++ ++ L G ++ Sbjct: 5 LLIEDDPSIREGVGLGLRRRGHEVSAAETGEDGLALMASFRPELVLLDLML--PGINGVQ 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR SQVP+I ++ + ++G DD + KP I ARV A+ RRL Sbjct: 63 VCRRIRESSQVPIIMLTARGDDFDIVVGLEAGADDYIVKPARTEVIEARVKAVLRRLSTP 122 Query: 123 NNRAETGPIR----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + G +GE PL E ++L +L A+ ++ Q+ ++ Sbjct: 123 AGSRPEVEFHGELAIDRAGLTVAKRGERVPLAPSEIKLLLHLSASPEHVFSRQQLLEYVW 182 Query: 179 GLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220 + +V++ + +LR K+ N + + R GY Sbjct: 183 D-HSYHADARLVDACVRRLRTKIENPAGSPRYIQTVRGFGYRF 224 >gi|149072098|ref|YP_001293493.1| OmpR-like protein [Rhodomonas salina] gi|134303049|gb|ABO70853.1| OmpR-like protein [Rhodomonas salina] Length = 248 Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 43/229 (18%), Positives = 86/229 (37%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++ G ++ E L ++ ++ + Sbjct: 12 ILVVDDEASIRRILETRLSMIGYNVVTAADGEEALNLLKKENPNLIVLDIMI--PKLDGY 69 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARVA 113 + + IR S VP+I ++ + + + G DD V KP +E + Sbjct: 70 GVCQEIRKESDVPIIMLTALGDVADRITGLELGADDYVIKPFSPKELEARIRSVLRRVER 129 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + ++ G + + + R L E +LE L++ G+ ++ I Sbjct: 130 VHFNPGIPTSGVMTVGFLTIDMNKRQVYKSNNRIRLTGMEFNLLELLVSKSGQAFSRADI 189 Query: 174 FSAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 ++G + V+ VV+ HIS+LR KL + D + + R GY Sbjct: 190 LQEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPDLILTARGTGYLF 238 >gi|218231580|ref|YP_002369664.1| DNA-binding response regulator [Bacillus cereus B4264] gi|229153061|ref|ZP_04281242.1| Two component transcriptional regulator, winged helix [Bacillus cereus m1550] gi|218159537|gb|ACK59529.1| DNA-binding response regulator [Bacillus cereus B4264] gi|228630481|gb|EEK87129.1| Two component transcriptional regulator, winged helix [Bacillus cereus m1550] Length = 232 Score = 152 bits (383), Expect = 5e-35, Method: Composition-based stats. Identities = 52/229 (22%), Positives = 84/229 (36%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD A + D +G + E + + D+ ++ Sbjct: 6 ILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIETQPIDLVILDIM--MPKMDGY 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR +P+I +S S + G DD + KP E++ARV A RR Sbjct: 64 EVTRQIRTKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFFT 123 Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 N + + R +V GE L +E IL L ++ K I Sbjct: 124 LNQPKVAESKSALEIGGVVINPERRTVDVYGEQIELTPKEFDILYLLASHPKKVYNVENI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221 F ++ N V HI LRKKL +K + + +GY+ + Sbjct: 184 FQHVWADDYYEGG-NTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTFN 231 >gi|229083561|ref|ZP_04215892.1| hypothetical protein bcere0022_2320 [Bacillus cereus Rock3-44] gi|228699758|gb|EEL52412.1| hypothetical protein bcere0022_2320 [Bacillus cereus Rock3-44] Length = 238 Score = 152 bits (383), Expect = 5e-35, Method: Composition-based stats. Identities = 40/227 (17%), Positives = 87/227 (38%), Gaps = 12/227 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++ DD ++D + ++ E L + ++ ++ +E Sbjct: 7 LIADDEKEIRDLLKKYLERELYIVDIAVDGEEALHLFEQNKYNLIILDLM--MPKVDGIE 64 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119 + R +R + +P++ ++ + G DD + KP E++AR+ A+ RR Sbjct: 65 VCRRLRNKTNIPILMLTAKDQEVDKILGLSIGADDYITKPFSVNEVIARIKALMRRFLVL 124 Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + + V L +E +L++ +N + KTQ+F Sbjct: 125 GSNAGTQEKTLLTFKGLTIDVNKYTVNVNDAEISLTGKELELLKFFASNPEQVFTKTQLF 184 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++ + ++N V HI KLRKK+ + + + +GY Sbjct: 185 RNVWD-SNYIEDDNTVMVHIRKLRKKIETDPSNPKFIQTVWGIGYKF 230 >gi|229084948|ref|ZP_04217200.1| DNA-binding response regulator [Bacillus cereus Rock3-44] gi|228698264|gb|EEL50997.1| DNA-binding response regulator [Bacillus cereus Rock3-44] Length = 224 Score = 152 bits (383), Expect = 5e-35, Method: Composition-based stats. Identities = 41/222 (18%), Positives = 95/222 (42%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ +G + + D+ ++ Sbjct: 4 ILIVDDDPHIRELVAVFLEREGFQTYEAIDGIDALGKIAEVKIDMVILDIM--MPNMDGW 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL +R + +PL+ ++ + F G DD + KP E++ RV A+ +R ++ Sbjct: 62 ELCYELRRYYDIPLLMLTAKGETSQKVKGFQLGTDDYLVKPFDPLELVVRVKALLKRYQI 121 Query: 122 SNNRAETGPIR-VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + +++ + + V +V LP +E +L L + G+ ++ Q+ ++G Sbjct: 122 TVSQSIQVGNVLLNRKTFEVTVGEQVIILPLKEFELLFMLGSKIGRTCSREQLIEEVWG- 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D E ++ HI++LR+K + + + + R LGY ++ Sbjct: 181 YDFEGNERTLDVHINRLREKFQKETASFAIKTIRGLGYRLEV 222 >gi|150014975|ref|YP_001307229.1| two component transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149901440|gb|ABR32273.1| two component transcriptional regulator, winged helix family [Clostridium beijerinckii NCIMB 8052] Length = 228 Score = 152 bits (383), Expect = 5e-35, Method: Composition-based stats. Identities = 40/224 (17%), Positives = 88/224 (39%), Gaps = 7/224 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + G + + + + + D+ ++ + ++ Sbjct: 9 LIVDDDENISEVIDMYLKSSGYNTKIALNGKEAQEFYLEYNPDIVLLDVMI--PYIDGID 66 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRRL 119 + + IR + P+I I+ + + G DD + KP +E + V Y Sbjct: 67 ILKWIRKQKETPVIMITAKGDTFDKVLALEIGADDYIVKPFEPKELLARVKAVLRRYSSE 126 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + N + + + S E +P +E +L YL N+ K + Q+ ++G Sbjct: 127 NIKNEVIKLSDLSIDSTSYKVIYNEEEIKMPPKEFELLYYLANNKNKVFTREQLLCEVWG 186 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 +D + V+ HI +LR+KL + + + +GY + N Sbjct: 187 -YDYPGDSRTVDVHIKRLREKL-SSGEQWEIQTVWGVGYKFEVN 228 >gi|223932685|ref|ZP_03624684.1| two component transcriptional regulator, winged helix family [Streptococcus suis 89/1591] gi|223898655|gb|EEF65017.1| two component transcriptional regulator, winged helix family [Streptococcus suis 89/1591] Length = 234 Score = 152 bits (383), Expect = 5e-35, Method: Composition-based stats. Identities = 48/233 (20%), Positives = 92/233 (39%), Gaps = 14/233 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + + + D+ ++ L L Sbjct: 4 ILIVDDEKPISDIIKFNMTREGYEVVTAFDGREALEVFEAEFPDIVILDLML--PELDGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-------- 113 E+ R IR S VP++ +S S + + G DD V KP +RE+ ARV Sbjct: 62 EVARTIRKTSNVPILMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELQARVKALLRRSEL 121 Query: 114 --AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 G + + D + G+ L RE +L +L + G+ + + Sbjct: 122 AETQTNIESTGTPELVIGDLVILPDAFVAKKHGKELELTHREFELLHHLAKHLGQVMTRE 181 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDWN 223 + ++G +D + V+ I +LR+K+ + + + ++R +GY I N Sbjct: 182 HLLETVWG-YDYFGDVRTVDVTIRRLREKIEDAPSRPEYILTRRGVGYFIKGN 233 >gi|322375301|ref|ZP_08049814.1| DNA-binding response regulator VicR [Streptococcus sp. C300] gi|321279564|gb|EFX56604.1| DNA-binding response regulator VicR [Streptococcus sp. C300] Length = 235 Score = 152 bits (383), Expect = 5e-35, Method: Composition-based stats. Identities = 49/234 (20%), Positives = 98/234 (41%), Gaps = 15/234 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + + L + + D+ ++ L L Sbjct: 4 ILIVDDEKPISDIIKFNMAKEGYEVVTAFNGREAIELFEAEQPDIIILDLML--PEIDGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-------- 113 E+ + IR S VP+I +S S + + G DD V KP +RE+ ARV Sbjct: 62 EVAKAIRKTSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTDL 121 Query: 114 ---AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + + + G + + D + GE L RE +L +L ++ G+ + + Sbjct: 122 VSVDSQESDEKKSQPLQIGDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHIGQVITR 181 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223 + ++G +D + V+ I +LR+K+ + + + ++R +GY + N Sbjct: 182 EHLLETVWG-YDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 234 >gi|217968684|ref|YP_002353918.1| two component transcriptional regulator PhoB, winged helix family [Thauera sp. MZ1T] gi|217506011|gb|ACK53022.1| two component transcriptional regulator PhoB, winged helix family [Thauera sp. MZ1T] Length = 236 Score = 152 bits (383), Expect = 5e-35, Method: Composition-based stats. Identities = 49/222 (22%), Positives = 86/222 (38%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +L++D +++ A G + N E + + A D+ ++ L G G + Sbjct: 5 ILLVEDEPAIQELIAANLARAGHHVVRANDAESAQRIVREALPDLVLLDWMLPGASGVEF 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 R +P+I ++ Q + + G DD V KP RE++AR+ A+ RR Sbjct: 65 ARRLRADERTRDIPIIMLTARGEEQDKVTALEVGADDYVTKPFSPRELVARIKAVLRRRA 124 Query: 121 VSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 R+ L E R+L +LM + + ++ Q+ ++ Sbjct: 125 PQTTEDVVELGGLRLDPATHRVSAGETALALGPTEFRLLHFLMTHPERVHSRAQLLDQVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G VEE V+ HI +LR L + + R GY Sbjct: 185 GDH-VFVEERTVDVHIRRLRCALEPSAHDALIQTVRGSGYRF 225 >gi|17231995|ref|NP_488543.1| two-component response regulator [Nostoc sp. PCC 7120] gi|17133639|dbj|BAB76202.1| two-component response regulator [Nostoc sp. PCC 7120] Length = 253 Score = 152 bits (383), Expect = 5e-35, Method: Composition-based stats. Identities = 44/232 (18%), Positives = 91/232 (39%), Gaps = 16/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARE-------DVSAIEAFLI 54 ++++D L+++ ++G + S D+ ++ L Sbjct: 24 ILVVEDEELIQEMLAVALEEEGYGVVTAADGRSAVEYLKSFDPNGGDFPFDLVILDLML- 82 Query: 55 GKGEKVLELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113 L++ R++ + VP++ +S S + + G DD + KP RE++AR Sbjct: 83 -PQINGLDICRLLRHQGNPVPILMLSAKGSETDRVLGLEVGADDYLTKPFSMRELVARCR 141 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQG----EVFPLPRRERRILEYLMANRGKRVA 169 A+ RR ++ E + + L +E R+LE M+ + + Sbjct: 142 ALLRRQRLITLPQLPVLKFKDVTLNPQECRVLVRGQEVNLSPKEFRLLELFMSYARRVWS 201 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + Q+ ++G D + V+ HI LR+KL + + + + R GY Sbjct: 202 REQLLDQVWG-PDFVGDSKTVDVHIRWLREKLEQDPSHPEYIVTVRGFGYRF 252 >gi|229003269|ref|ZP_04161100.1| hypothetical protein bmyco0002_2490 [Bacillus mycoides Rock1-4] gi|228757987|gb|EEM07201.1| hypothetical protein bmyco0002_2490 [Bacillus mycoides Rock1-4] Length = 237 Score = 152 bits (383), Expect = 5e-35, Method: Composition-based stats. Identities = 41/227 (18%), Positives = 92/227 (40%), Gaps = 12/227 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++ DD ++D + +++ + E L + + ++ ++ +E Sbjct: 7 LIADDEKEIRDLLKKYLERELYTVDIAINGEEALHLFNQNKYNLIILDLM--MPKVDGIE 64 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119 + R +R + +P++ ++ + G DD + KP E++AR+ A+ RR Sbjct: 65 VCRRLRNKTNIPILMLTAKDQEVDKILGLSIGADDYITKPFSINEVVARIKALMRRFLVL 124 Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + + V G+ L +E +L++ +N + KTQ+F Sbjct: 125 GSNASVQEKTLLTFKGLTIDVNKYIVNVDGKEISLTGKELELLKFFASNPEQVFTKTQLF 184 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++ + ++N V HI KLRKK+ + + + +GY Sbjct: 185 RNVWD-SNYIEDDNTVMVHIRKLRKKIEADPSNPKFIQTVWGIGYKF 230 >gi|325291012|ref|YP_004267193.1| two component transcriptional regulator, winged helix family [Syntrophobotulus glycolicus DSM 8271] gi|324966413|gb|ADY57192.1| two component transcriptional regulator, winged helix family [Syntrophobotulus glycolicus DSM 8271] Length = 246 Score = 152 bits (383), Expect = 5e-35, Method: Composition-based stats. Identities = 41/230 (17%), Positives = 84/230 (36%), Gaps = 14/230 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G +++ D+ I+ L G L Sbjct: 18 ILIVEDDPSIAELQKDYLEVAGFAVKICADGLAGFQEIQKESYDLLIIDIML--PGLDGL 75 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH----------HREILAR 111 E+ R + +P++ +S + F G DD + KP H E R Sbjct: 76 EILRRMNEEKDIPVLLVSAKKEEIDKIKGFSLGADDYITKPFSPGELVARVKAHLENYER 135 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + ++ +R+ R V G+ L ++E +L +L + + Sbjct: 136 LKNRFKEGPPPVKAISIRGLRIEKGARRVYVHGQEVNLAQKEFDLLLFLSEHPNHVFGRE 195 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 +IF ++GL D + V HI+++R+K+ + V++ GY Sbjct: 196 EIFERVWGL-DSLGDSTTVTVHIARIREKIESDPSSPQYVETVWGAGYRF 244 >gi|325674080|ref|ZP_08153770.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707] gi|325555345|gb|EGD25017.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707] Length = 229 Score = 152 bits (383), Expect = 5e-35, Method: Composition-based stats. Identities = 51/228 (22%), Positives = 100/228 (43%), Gaps = 11/228 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + D L +G + D+ ++ L G + Sbjct: 5 LIVEDEESLADPLAFLLRKEGFETTVVGDGPSALAEFERSGADIVLLDVML--PGMSGTD 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + +RA S VP+I ++ S + + G DD V KP RE++AR+ A+ RR + Sbjct: 63 VCKQLRAKSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGADN 122 Query: 123 NNRAETG-------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + P+R+ + V G+ LP +E +LEYL+ N G+ + + Q+ Sbjct: 123 EAATDVDDGVLAAGPVRMDVERHLVHVNGDPVTLPLKEFDLLEYLLRNSGRVLTRGQLID 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 ++G D + ++ H+ +LR K+ + + + R LGY ++ Sbjct: 183 RVWGA-DYVGDTKTLDVHVKRLRAKIEGDPGKPKHLVTVRGLGYKLEE 229 >gi|294630055|ref|ZP_06708615.1| DNA-binding response regulator RegX3 [Streptomyces sp. e14] gi|292833388|gb|EFF91737.1| DNA-binding response regulator RegX3 [Streptomyces sp. e14] Length = 226 Score = 152 bits (383), Expect = 5e-35, Method: Composition-based stats. Identities = 52/224 (23%), Positives = 95/224 (42%), Gaps = 8/224 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D D + +G + + D+ ++ L G E Sbjct: 5 LVVEDEESFSDALSYMLRKEGFEVAVAATGPDGLDEFERNGADLVLLDLML--PGLPGTE 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +R S VP+I ++ S + + G DD V KP RE++AR+ A+ RR Sbjct: 63 VCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGEP 122 Query: 123 NNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 GP+R+ D V G LP +E +LE L+ N G+ + + Q+ ++ Sbjct: 123 EEVTPAALEAGPVRMDVDRHVVTVSGSKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRVW 182 Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 G D + ++ H+ +LR K+ + + + R LGY + Sbjct: 183 GA-DYVGDTKTLDVHVKRLRAKIEPDPGAPRFLVTVRGLGYKFE 225 >gi|302876607|ref|YP_003845240.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] gi|307687281|ref|ZP_07629727.1| two component transcriptional regulator, winged helix family protein [Clostridium cellulovorans 743B] gi|302579464|gb|ADL53476.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] Length = 224 Score = 152 bits (383), Expect = 5e-35, Method: Composition-based stats. Identities = 43/224 (19%), Positives = 96/224 (42%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + G + + + D+ ++ I Sbjct: 4 ILIVDDDLNICEVIKMYLENSGYETSLAYCAQEAQDQVKGFKPDLILLDI--IMPETDGY 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IR Q P+I ++ + + G DD + KP +E++ARV A+ RR + Sbjct: 62 EILKWIRREHQTPVIMLTAKSDTFDKVLGLELGADDYIVKPFDPKELIARVKAVLRRTII 121 Query: 122 SNNRAETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++ E + + D + E +P +E ++ +L +N+ K + Q+ ++ Sbjct: 122 TDKVKEKIIFQGLVIDMDSYTIYYKDEEMRMPPKEFELIYFLASNKNKVFTREQLLCEVW 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 G +D + V+ HI +LR+KL++ +++ +GY + Sbjct: 182 G-YDYPGDSRTVDVHIKRLREKLQD-GENWQIETVWGVGYKFEV 223 >gi|228925531|ref|ZP_04088621.1| hypothetical protein bthur0010_2590 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228834132|gb|EEM79679.1| hypothetical protein bthur0010_2590 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 237 Score = 152 bits (383), Expect = 5e-35, Method: Composition-based stats. Identities = 43/228 (18%), Positives = 88/228 (38%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD +++ + ++ E L + + ++ + Sbjct: 6 ILIADDDKEIRNLLKIYLERELYMVDTAIDGEVALQLFNQNNYSIVILDLM--MPKVDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R + VP++ ++ + G DD + KP E++ARV A+ RR V Sbjct: 64 EVCRKLRDKTNVPILMLTAKDHAVDKILGLSIGADDYITKPFSIHEVVARVKALIRRFLV 123 Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + + E L +E +L++ +N G+ KTQ+ Sbjct: 124 LGSNINVQEKTTLAFKGLTINLNTYTVHTNKEEISLTGKELELLKFFTSNPGQVFTKTQL 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 F ++ + ++N V HI KLRKK+ + + + +GY Sbjct: 184 FRNVWD-DNYIEDDNTVMVHIRKLRKKIEIDPSNPKFIQTVWGIGYKF 230 >gi|30018518|ref|NP_830149.1| two-component response regulator [Bacillus cereus ATCC 14579] gi|229125764|ref|ZP_04254792.1| Two-component response regulator [Bacillus cereus BDRD-Cer4] gi|29894058|gb|AAP07350.1| Two-component response regulator [Bacillus cereus ATCC 14579] gi|228657704|gb|EEL13514.1| Two-component response regulator [Bacillus cereus BDRD-Cer4] Length = 233 Score = 152 bits (383), Expect = 5e-35, Method: Composition-based stats. Identities = 46/230 (20%), Positives = 89/230 (38%), Gaps = 11/230 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ ++G + E L + ++ + Sbjct: 6 ILVVDDEKEIRNLITIYLKNEGYKVLQAEDGEEGLRLLEENEVHLVVLDIM--MPKVDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + +R ++P+I +S + +G DD V KP + E++AR+ + RR Sbjct: 64 HMCMKVREAKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMK 123 Query: 122 SNNRAETG-------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N A +++ V+GE L RE ILE L N G + QI+ Sbjct: 124 MNGFAIQNEDELEIGEMKINISTHKVIVEGEEVKLTPREFSILELLARNPGMVFSAEQIY 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223 ++ +N V HI K+R+K+ + + +GY I+ + Sbjct: 184 EKVWNERSFQ-SDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGYKIEKD 232 >gi|126699731|ref|YP_001088628.1| two-component system response regulator [Clostridium difficile 630] gi|254975704|ref|ZP_05272176.1| two-component system response regulator [Clostridium difficile QCD-66c26] gi|255093090|ref|ZP_05322568.1| two-component system response regulator [Clostridium difficile CIP 107932] gi|255101245|ref|ZP_05330222.1| two-component system response regulator [Clostridium difficile QCD-63q42] gi|255307120|ref|ZP_05351291.1| two-component system response regulator [Clostridium difficile ATCC 43255] gi|255314833|ref|ZP_05356416.1| two-component system response regulator [Clostridium difficile QCD-76w55] gi|255517507|ref|ZP_05385183.1| two-component system response regulator [Clostridium difficile QCD-97b34] gi|255650618|ref|ZP_05397520.1| two-component system response regulator [Clostridium difficile QCD-37x79] gi|255656088|ref|ZP_05401497.1| two-component system response regulator [Clostridium difficile QCD-23m63] gi|260683714|ref|YP_003214999.1| two-component system response regulator [Clostridium difficile CD196] gi|260687374|ref|YP_003218508.1| two-component system response regulator [Clostridium difficile R20291] gi|296450481|ref|ZP_06892237.1| response regulator [Clostridium difficile NAP08] gi|296879395|ref|ZP_06903389.1| response regulator [Clostridium difficile NAP07] gi|115251168|emb|CAJ68999.1| Two-component response regulator [Clostridium difficile] gi|260209877|emb|CBA63796.1| two-component system response regulator [Clostridium difficile CD196] gi|260213391|emb|CBE05019.1| two-component system response regulator [Clostridium difficile R20291] gi|296260742|gb|EFH07581.1| response regulator [Clostridium difficile NAP08] gi|296429541|gb|EFH15394.1| response regulator [Clostridium difficile NAP07] Length = 222 Score = 152 bits (383), Expect = 5e-35, Method: Composition-based stats. Identities = 37/224 (16%), Positives = 89/224 (39%), Gaps = 9/224 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + +++ +G ++ N D+ ++ Sbjct: 5 ILVIEDDSNIQELISEFLSAEGYQVDTANDGLEGIQKFKQGSYDLVILDIM--MPNLDGY 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR--EILARVAAIYRRL 119 + ++IR S VP+I ++ L FD DD + KP Sbjct: 63 GVCKMIRKSSSVPIIFLTALNDEGDQLKGFDLECDDYITKPFSFNLLIKRVEAILRRSNK 122 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +++ +++ + E+ GE L +E IL+ L+ + + + + +I+G Sbjct: 123 TINDKFIVFEKLKLDLNTYIAEIDGEPIELTLKEFNILKALIEKYPQVITREGLLDSIWG 182 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 +D + +V++HI +RKK+ + + + +GY+++ + Sbjct: 183 -YDYYGDTRIVDAHIKNIRKKISLP----YIKTVKGIGYTLEKD 221 >gi|300787588|ref|YP_003767879.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299797102|gb|ADJ47477.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 228 Score = 152 bits (383), Expect = 5e-35, Method: Composition-based stats. Identities = 55/220 (25%), Positives = 95/220 (43%), Gaps = 5/220 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L++D A++ + D+ + + E L S DV ++ L G L Sbjct: 8 LLVEDDAMISEALSLALTDEDFDVLAAATGEDGLDLLESTSVDVVLLDLML--PGIDGLT 65 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +R H +P+I I+ + ++G DD V KP+ E+ AR+ A+ RR + Sbjct: 66 VCRRVREHGDLPIIVITARTDTHDVIAGLEAGADDYVTKPLVAGELAARIRALLRRTASA 125 Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + D G L R E R+L L A GK V + Q+ ++G Sbjct: 126 RPARFSVGRLEIRPDEEAVHRDGVPVHLTRTEFRLLTELAAAEGKVVTREQLLQRVWG-H 184 Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 D + +++ HI +LR+K+ + V + R GY I Sbjct: 185 DYFGDTRLLDVHIRRLRRKVEPDPDAPSLVLTVRGSGYRI 224 >gi|288554258|ref|YP_003426193.1| winged helix family two component transcriptional regulator [Bacillus pseudofirmus OF4] gi|288545418|gb|ADC49301.1| two component transcriptional regulator, winged helix family [Bacillus pseudofirmus OF4] Length = 229 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 42/226 (18%), Positives = 83/226 (36%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A +++ +G ++ + V ++ Sbjct: 6 ILIVEDEAPMRELLQLYLRKEGYVVDEAITGIEALEKVEKTLYSVVLLDVM--MPEMDGF 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116 E+ R IR SQVP+I ++ + G DD + KP E+LAR Sbjct: 64 EVCREIRKVSQVPVIMLTARTQTLDKVKGLKIGADDYLTKPFEQEELLARVEAVLRRYGV 123 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + N + + + E L +E ILE + N+ + ++ I Sbjct: 124 SEPESRGNTLFFKGLVMKRNAYQVYYNEEELSLTPKEFAILELFLLNKNRVFSRDDILEL 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL--GFDPVDSKRFLGYSI 220 ++G +D + V++H+ LR KL G + + +GY + Sbjct: 184 VWG-YDFIGDYRGVDTHVKHLRDKLTEAGISGRSVIKTVWGVGYKL 228 >gi|226313242|ref|YP_002773136.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226096190|dbj|BAH44632.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 234 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 49/227 (21%), Positives = 91/227 (40%), Gaps = 8/227 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +I+D + + +G ++ + A+ + L+ + Sbjct: 8 IFIIEDDQAIVEMVETYLTKEGYAVTVAGDGDEGLRKFEQAQGRFDLLLVDLMMPKIDGM 67 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115 E+ R IRA+S VP++ +S S G DD + KP E+ + R A Sbjct: 68 EVIRRIRAYSHVPILIMSAKDSDIDKALGLGFGADDYIEKPFSMIELSARLKAIIRRATQ 127 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 Y ++ +N G +R+ D Q E L +E IL A+ + K QI++ Sbjct: 128 YASVETKHNTLNMGDLRIDFDSFAVFKQEEPIKLTSKEFEILRLFAAHPNRVFTKAQIYA 187 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 ++ D +ENV+ H+S+LR K+ + + + +GY + Sbjct: 188 KVW-NDDYYGDENVINVHMSRLRDKIEDNPSEPRYIKTLWGIGYKWE 233 >gi|224476605|ref|YP_002634211.1| respiratory response regulator receiver SrrA [Staphylococcus carnosus subsp. carnosus TM300] gi|222421212|emb|CAL28026.1| staphylococcal respiratory response regulator receiver SrrA [Staphylococcus carnosus subsp. carnosus TM300] Length = 240 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 36/233 (15%), Positives = 85/233 (36%), Gaps = 14/233 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ + +E + + + ++ L + Sbjct: 4 ILVVDDEERIRRLLKLYLERESFDIEEAQDGKEALDMALNTDYACILLDLML--PELDGI 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112 E+ +R + P+I ++ ++ F+SG DD + KP RE Sbjct: 62 EVANRLREYKDTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTLT 121 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 A + + + E + + +D G L +E +L +L K + Q Sbjct: 122 ATSEQNEPHARDLIEFKHLVIDNDAHRVLADGTQVNLTPKEYELLIFLAKTPNKVFDREQ 181 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSIDWN 223 + ++ ++ + V++H+ +LR+KL + + + +GY + N Sbjct: 182 LLKDVW-HYEFYGDLRTVDTHVKRLREKLNRVSSDAAHMIQTVWGVGYKFEVN 233 >gi|167040620|ref|YP_001663605.1| two component transcriptional regulator [Thermoanaerobacter sp. X514] gi|300914661|ref|ZP_07131977.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter sp. X561] gi|307724105|ref|YP_003903856.1| winged helix family two component transcriptional regulator [Thermoanaerobacter sp. X513] gi|166854860|gb|ABY93269.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter sp. X514] gi|300889596|gb|EFK84742.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter sp. X561] gi|307581166|gb|ADN54565.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter sp. X513] Length = 234 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 40/225 (17%), Positives = 91/225 (40%), Gaps = 7/225 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVL 61 ++I+D + + G + + + + D+ ++ L G ++ Sbjct: 6 LVIEDEIHILELLRYNLEAAGYKVITSENGKEGLDKALEGKPDLVILDLMLPDVDGLEIC 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117 ++ + +P+I ++ + + G DD + KP R I A + + Sbjct: 66 KILKKNDETKNIPIIMLTAKSEEFDKVLGLELGADDYITKPFSVRELLARIKAVLRRTQQ 125 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + G I + + +G+V L +E +L+ L N GK + + + + Sbjct: 126 PDEEKEGIIKFGDIVIDTGKHLVYKKGKVLELTLKEFELLKLLSQNMGKVLTRDYLLDKV 185 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 +G ++ A E V+ HI LRKK+ + +++ R +GY ++ Sbjct: 186 WG-YEYAGETRTVDVHIRHLRKKIEDDDKSPVYIETVRGIGYKLN 229 >gi|256396504|ref|YP_003118068.1| two component transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256362730|gb|ACU76227.1| two component transcriptional regulator, winged helix family [Catenulispora acidiphila DSM 44928] Length = 229 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 50/225 (22%), Positives = 94/225 (41%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V+D +G +E + R D ++ L Sbjct: 3 ILVVDDDQAVRDSLRRSLAFNGYEVELAADGLAALEAIAKRRPDAVVLDVM--MPRLDGL 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E R +R+ + P++ ++ ++ + D+G DD + KP E+LAR+ A+ RR + Sbjct: 61 ETCRRLRSAGEDLPVLLLTARDAVPDRVAGLDAGADDYLPKPFALEELLARLRALLRRTQ 120 Query: 121 VSNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 S P+ R+ G+ L R E +LE LM + + + + QI Sbjct: 121 GSLADQSDAPLAFADLTLDPATREVTRAGKPVRLTRTEFNLLELLMRHPRQVLTRAQILE 180 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G +D N +E ++ LR+K + + R +GYS+ Sbjct: 181 EVWG-YDFPTTANSLEVYVGYLRRKTEADELPRLIHTVRGVGYSL 224 >gi|87125177|ref|ZP_01081023.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. RS9917] gi|86166946|gb|EAQ68207.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. RS9917] Length = 248 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 44/228 (19%), Positives = 90/228 (39%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++ G ++ + D+ ++ Sbjct: 11 ILVVDDEASIRRILETRLSMIGYNVITASDGNEALECFRVNEPDLVVLDVM--MPKLDGY 68 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + +R S VP++ ++ + + + G DD V KP +E+ AR+ + RR+ Sbjct: 69 GVCQELRKESDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRVDK 128 Query: 122 SNNRAETGPI-------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 R+ ++ R E L E +LE L++ G+ ++ +I Sbjct: 129 EQVAGIPNSGLIQVADLRIDTNKRQVFRGDERIRLTGMEFSLLELLVSRSGEPFSRGEIL 188 Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 ++G + V+ VV+ HIS+LR KL + + + + R GY Sbjct: 189 KDVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGYLF 236 >gi|317129751|ref|YP_004096033.1| two component transcriptional regulator, winged helix family [Bacillus cellulosilyticus DSM 2522] gi|315474699|gb|ADU31302.1| two component transcriptional regulator, winged helix family [Bacillus cellulosilyticus DSM 2522] Length = 236 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 41/222 (18%), Positives = 79/222 (35%), Gaps = 7/222 (3%) Query: 4 LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63 +++D ++ + A G +E + + D ++ L E+ Sbjct: 7 IVEDEPMIIEVLKAYLEKSGYRVESAQNGKEGLTKIREGNPDFVILDLML--PDMPGEEI 64 Query: 64 PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR----VAAIYRRL 119 + IR S VP++ +S S + + G DD V KP RE++ R + Sbjct: 65 CKQIRLTSDVPIMMLSAKSSEEDRIGGIVIGADDYVTKPFSPREVIVRLEAILRRTRTLN 124 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 K+ I + ++ + E L E I+ + + G+ ++ + I Sbjct: 125 KMEIFSFNKKEIIIDFIKKEVLLNNETISLTPIEFNIITIMAKHPGRVFSRADLLQKIQE 184 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 E ++ HI LRKKL + + +GY Sbjct: 185 DSFFEGYERSIDVHIKNLRKKLEVNTKQPKYILTVFGMGYKF 226 >gi|229048564|ref|ZP_04194124.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH676] gi|229112318|ref|ZP_04241857.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock1-15] gi|228671158|gb|EEL26463.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock1-15] gi|228722766|gb|EEL74151.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH676] Length = 232 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 52/229 (22%), Positives = 84/229 (36%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD A + D +G + E + + D+ ++ Sbjct: 6 ILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVILDIM--MPKMDGY 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR +P+I +S S + G DD + KP E++ARV A RR Sbjct: 64 EVTRQIRTKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFFT 123 Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 N + + R +V GE L +E IL L ++ K I Sbjct: 124 LNQPKVAESKSALEIGGVVINPERRTVDVYGEQIELTPKEFDILYLLASHPKKVYNVENI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221 F ++ N V HI LRKKL +K + + +GY+ + Sbjct: 184 FQHVWADDYYEGG-NTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTFN 231 >gi|297200653|ref|ZP_06918050.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] gi|197709788|gb|EDY53822.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] Length = 245 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 50/230 (21%), Positives = 90/230 (39%), Gaps = 14/230 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V++ +G E ++ R D+ ++ L Sbjct: 13 ILIVDDEPAVREALQRSLAFEGYDTEVAVDGADALDKATAYRPDLVVLDI--QMPRMDGL 70 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 R IR A P++ ++ ++ + D+G DD + KP E+ ARV A+ RR Sbjct: 71 TAARRIRGAGDTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARVRALLRRSS 130 Query: 121 VSNNRAETGPI----------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + R+ R+ G L R E +LE MA+ + + + Sbjct: 131 YAAAAGAAAADDDEALTFADLRMDLATREVTRAGRPVELTRTEFTLLEMFMAHPRQVLTR 190 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 QI A++G FD N ++ ++ LR+K V + R +GY + Sbjct: 191 EQILKAVWG-FDFEPSSNSLDVYVMYLRRKTEAGGEPRLVHTVRGVGYVL 239 >gi|159902689|ref|YP_001550033.1| two-component response regulator [Prochlorococcus marinus str. MIT 9211] gi|159887865|gb|ABX08079.1| two-component response regulator [Prochlorococcus marinus str. MIT 9211] Length = 248 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 44/229 (19%), Positives = 94/229 (41%), Gaps = 11/229 (4%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + ++ DD A ++ G + ++ + D+ ++ Sbjct: 10 IILVADDEASIRRILETRLSMIGYQVVTASNGNEALEKFRNLEPDLVVLDVM--MPKLDG 67 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + + +R S VP++ ++ + + + G DD V KP +E+ AR+ + RR++ Sbjct: 68 YGVIQELRKESDVPIVMLTALGDVADRITGLELGADDYVIKPFSPKELEARIRCVLRRIE 127 Query: 121 VSNN-------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + R+ ++ R E L E +LE L++ G+ ++ +I Sbjct: 128 KEHIAGLPNSGVIQVASFRIDTNKRKVFRGDERIRLTGMEFSLLELLVSRSGEPFSRGEI 187 Query: 174 FSAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 ++G + V+ VV+ HIS+LR KL + + + + R GY Sbjct: 188 LKEVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGYLF 236 >gi|288920186|ref|ZP_06414502.1| two component transcriptional regulator, winged helix family [Frankia sp. EUN1f] gi|288348436|gb|EFC82697.1| two component transcriptional regulator, winged helix family [Frankia sp. EUN1f] Length = 226 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 49/225 (21%), Positives = 90/225 (40%), Gaps = 8/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D D + +G + D+ ++ L G Sbjct: 4 LLVVEDEESFSDALSFMLEREGFEVAVVGDGPSALAEFDRRGADLILLDLML--PGLSGT 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117 E+ R +RA S VP+I ++ S + + G DD V KP R I A + Sbjct: 62 EVCRTLRARSTVPVIMLTARDSEIDKVVGLELGADDYVTKPFSARELVARIRAVLRRRVE 121 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 +VS+ E G +R+ + V G LP +E +LE + N G+ + + Q+ + Sbjct: 122 TEEVSDTTLEVGRVRMDVERHVVTVDGNQVSLPLKEFELLEMFLRNAGRVLTRGQLIDRV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 +G D + ++ H+ +LR K+ + + R LGY + Sbjct: 182 WG-SDYVGDTKTLDVHVKRLRTKIEAEPGAPRHLVTVRGLGYKFE 225 >gi|84501127|ref|ZP_00999362.1| phosphate regulon transcriptional regulatory protein PhoB [Oceanicola batsensis HTCC2597] gi|84391194|gb|EAQ03612.1| phosphate regulon transcriptional regulatory protein PhoB [Oceanicola batsensis HTCC2597] Length = 228 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 54/221 (24%), Positives = 94/221 (42%), Gaps = 4/221 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61 ++++D ++ +G + E L A D+ ++ L G +V Sbjct: 8 LVVEDEPAQREVLAYNLEAEGFRVNRAADGEEALMLVDEAAPDIIVLDWMLPSVSGIEVC 67 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ VP+I +S + ++G DD V KP E++ARV A RR + Sbjct: 68 RQLKMRTETRGVPIIMLSARSEEVDRVRGLETGADDYVVKPYSVIELMARVRAQLRRTRP 127 Query: 122 SNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S I + S+ +G+V L E R+L M G+ ++ Q+ ++G Sbjct: 128 STVGERLEYEGIVLDSETHRVTREGQVLKLGPTEFRLLTTFMEKPGRVWSREQLLDRVWG 187 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D V+ V+ HI +LRK L G DP+ + R GY++ Sbjct: 188 R-DIYVDTRTVDVHIGRLRKALCQFGGDDPLRTVRGAGYAL 227 >gi|313890279|ref|ZP_07823913.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Streptococcus pseudoporcinus SPIN 20026] gi|313121384|gb|EFR44489.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Streptococcus pseudoporcinus SPIN 20026] Length = 236 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 49/232 (21%), Positives = 97/232 (41%), Gaps = 16/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + + D+ ++ L L Sbjct: 4 ILIVDDEKPISDIIKFNLTKEGYDIMTAFDGREAIAAFEEGKPDLVILDLML--PEMDGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IR S +P+I +S S + + G DD V KP +RE+LARV A RR + Sbjct: 62 EVAKEIRKTSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTET 121 Query: 122 S------------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 N G +++ D + G+ L RE +L +L + G+ + Sbjct: 122 IETAVAEENASSGNQELTIGNLQILPDAFLAKKYGKEVELTHREFELLHHLANHIGQVMT 181 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + + ++G +D + V+ + +LR+K+ + + + ++R +GY + Sbjct: 182 REHLLETVWG-YDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYM 232 >gi|293365512|ref|ZP_06612221.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037] gi|307703470|ref|ZP_07640412.1| response regulator [Streptococcus oralis ATCC 35037] gi|291315880|gb|EFE56324.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037] gi|307622877|gb|EFO01872.1| response regulator [Streptococcus oralis ATCC 35037] Length = 235 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 49/234 (20%), Positives = 97/234 (41%), Gaps = 15/234 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + + L + + D+ ++ L L Sbjct: 4 ILIVDDEKPISDIIKFNMAKEGYEVVTAFNGREAIELFEAEQPDIIILDLML--PEIDGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-------- 113 E+ + IR S VP+I +S S + + G DD V KP +RE+ ARV Sbjct: 62 EVAKAIRKTSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTDL 121 Query: 114 ---AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + + G + + D + GE L RE +L +L ++ G+ + + Sbjct: 122 VSVDSQESDEKKTQPLQIGDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHIGQVITR 181 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223 + ++G +D + V+ I +LR+K+ + + + ++R +GY + N Sbjct: 182 EHLLETVWG-YDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 234 >gi|253752080|ref|YP_003025221.1| response regulator protein [Streptococcus suis SC84] gi|251816369|emb|CAZ52000.1| response regulator protein [Streptococcus suis SC84] Length = 234 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 50/233 (21%), Positives = 97/233 (41%), Gaps = 14/233 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + + + D+ ++ L L Sbjct: 4 ILIVDDEKPISDIIKFNMTREGYEVVTAFDGREALEVFEAEFPDIVILDLML--PELDGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR S VP++ +S S + + G DD V KP +RE+ ARV A+ RR ++ Sbjct: 62 EVARTIRKTSNVPILMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELQARVKALLRRSEL 121 Query: 122 SNNRAETGPI----------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + + D + G+ L RE +L +L + G+ + + Sbjct: 122 PETQTNIESTGTPELVIGDLVILPDAFVAKKHGKELELTHREFELLHHLAKHLGQVMTRE 181 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223 + ++G +D + V+ I +LR+K+ + + + ++R +GY I N Sbjct: 182 HLLETVWG-YDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYFIKGN 233 >gi|220929522|ref|YP_002506431.1| transcriptional regulator [Clostridium cellulolyticum H10] gi|219999850|gb|ACL76451.1| two component transcriptional regulator, winged helix family [Clostridium cellulolyticum H10] Length = 238 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 53/232 (22%), Positives = 108/232 (46%), Gaps = 12/232 (5%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + +++D ++ +G + F++ E S D+ ++ L G Sbjct: 5 LIFVVEDEMHIQQLIKYNLEANGFKVNVFDNGEDLLEYSSGKVPDLFILDIML--PGIDG 62 Query: 61 LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 LE+ R ++ ++ +P+I ++ + + G DD + KP RE++ARV A++R Sbjct: 63 LEVCRNLKQNNNTKTIPIIMLTAKSEEFDKVLGLELGADDYITKPFSVRELIARVKALFR 122 Query: 118 RLKVSNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 R+ +N G I++ R+ ++ +P +E +L+ L+ N+GK +++ + Sbjct: 123 RVNTTNEPKIEVLSHGEIKIDCTRREVYKGDKLLEMPLKEFELLKMLVLNKGKVLSREHL 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI-DWN 223 I+G FD E V+ HI LR+K+ + +++ R +GY D N Sbjct: 183 LDKIWG-FDYYGETRTVDVHIRYLRQKIEDNDDNPTYIETVRGIGYRFTDKN 233 >gi|15607632|ref|NP_215005.1| two component sensory transduction protein RegX3 [Mycobacterium tuberculosis H37Rv] gi|31791671|ref|NP_854164.1| two component sensory transduction protein RegX3 [Mycobacterium bovis AF2122/97] gi|148660258|ref|YP_001281781.1| two component sensory transduction protein RegX3 [Mycobacterium tuberculosis H37Ra] gi|148821690|ref|YP_001286444.1| two component system sensor transduction protein regX3 [Mycobacterium tuberculosis F11] gi|215402254|ref|ZP_03414435.1| two component system sensor transduction protein regX3 [Mycobacterium tuberculosis 02_1987] gi|215410013|ref|ZP_03418821.1| two component system sensor transduction protein regX3 [Mycobacterium tuberculosis 94_M4241A] gi|215444596|ref|ZP_03431348.1| two component system sensor transduction protein regX3 [Mycobacterium tuberculosis T85] gi|218752126|ref|ZP_03530922.1| two component system sensor transduction protein regX3 [Mycobacterium tuberculosis GM 1503] gi|219556316|ref|ZP_03535392.1| two component system sensor transduction protein regX3 [Mycobacterium tuberculosis T17] gi|253797420|ref|YP_003030421.1| two component system sensor protein regX3 [Mycobacterium tuberculosis KZN 1435] gi|254363455|ref|ZP_04979501.1| two component sensory transduction protein regX3 [Mycobacterium tuberculosis str. Haarlem] gi|254549440|ref|ZP_05139887.1| two component system sensor protein regX3 [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260185360|ref|ZP_05762834.1| two component system sensor protein regX3 [Mycobacterium tuberculosis CPHL_A] gi|260199491|ref|ZP_05766982.1| two component system sensor protein regX3 [Mycobacterium tuberculosis T46] gi|260203644|ref|ZP_05771135.1| two component system sensor protein regX3 [Mycobacterium tuberculosis K85] gi|289441874|ref|ZP_06431618.1| two component system sensor protein regX3 [Mycobacterium tuberculosis T46] gi|289446035|ref|ZP_06435779.1| two component system sensor protein regX3 [Mycobacterium tuberculosis CPHL_A] gi|289552742|ref|ZP_06441952.1| two component system sensor protein regX3 [Mycobacterium tuberculosis KZN 605] gi|289568414|ref|ZP_06448641.1| two component system sensor protein regX3 [Mycobacterium tuberculosis T17] gi|289573078|ref|ZP_06453305.1| two component system sensor protein regX3 [Mycobacterium tuberculosis K85] gi|289744198|ref|ZP_06503576.1| two component system sensor transduction protein regX3 [Mycobacterium tuberculosis 02_1987] gi|289756566|ref|ZP_06515944.1| two component system sensor transduction protein regX3 [Mycobacterium tuberculosis T85] gi|289760610|ref|ZP_06519988.1| two component sensory transduction protein regX3 [Mycobacterium tuberculosis GM 1503] gi|294995998|ref|ZP_06801689.1| two component system sensor protein regX3 [Mycobacterium tuberculosis 210] gi|297632977|ref|ZP_06950757.1| two component system sensor protein regX3 [Mycobacterium tuberculosis KZN 4207] gi|297729952|ref|ZP_06959070.1| two component system sensor protein regX3 [Mycobacterium tuberculosis KZN R506] gi|298523970|ref|ZP_07011379.1| two component sensory transduction protein regX3 [Mycobacterium tuberculosis 94_M4241A] gi|306779340|ref|ZP_07417677.1| two component system sensor protein regX3 [Mycobacterium tuberculosis SUMu002] gi|306802091|ref|ZP_07438759.1| two component system sensor protein regX3 [Mycobacterium tuberculosis SUMu008] gi|306806302|ref|ZP_07442970.1| two component system sensor protein regX3 [Mycobacterium tuberculosis SUMu007] gi|306966500|ref|ZP_07479161.1| two component system sensor protein regX3 [Mycobacterium tuberculosis SUMu009] gi|306970694|ref|ZP_07483355.1| two component system sensor protein regX3 [Mycobacterium tuberculosis SUMu010] gi|313657281|ref|ZP_07814161.1| two component system sensor protein regX3 [Mycobacterium tuberculosis KZN V2475] gi|1731207|sp|Q11156|REGX3_MYCTU RecName: Full=Sensory transduction protein regX3 gi|38605703|sp|O07130|REGX3_MYCBO RecName: Full=Sensory transduction protein regX3 gi|1449289|emb|CAB00952.1| TWO COMPONENT SENSORY TRANSDUCTION PROTEIN REGX3 (TRANSCRIPTIONAL REGULATORY PROTEIN) (PROBABLY LUXR-FAMILY) [Mycobacterium tuberculosis H37Rv] gi|2190480|emb|CAA73958.1| RegX3 [Mycobacterium tuberculosis] gi|31617257|emb|CAD93364.1| TWO COMPONENT SENSORY TRANSDUCTION PROTEIN REGX3 (TRANSCRIPTIONAL REGULATORY PROTEIN) (PROBABLY LUXR-FAMILY) [Mycobacterium bovis AF2122/97] gi|134148969|gb|EBA41014.1| two component sensory transduction protein regX3 [Mycobacterium tuberculosis str. Haarlem] gi|148504410|gb|ABQ72219.1| two component sensory transduction protein RegX3 [Mycobacterium tuberculosis H37Ra] gi|148720217|gb|ABR04842.1| two component system sensor transduction protein regX3 [Mycobacterium tuberculosis F11] gi|253318923|gb|ACT23526.1| two component system sensor protein regX3 [Mycobacterium tuberculosis KZN 1435] gi|289414793|gb|EFD12033.1| two component system sensor protein regX3 [Mycobacterium tuberculosis T46] gi|289418993|gb|EFD16194.1| two component system sensor protein regX3 [Mycobacterium tuberculosis CPHL_A] gi|289437374|gb|EFD19867.1| two component system sensor protein regX3 [Mycobacterium tuberculosis KZN 605] gi|289537509|gb|EFD42087.1| two component system sensor protein regX3 [Mycobacterium tuberculosis K85] gi|289542168|gb|EFD45816.1| two component system sensor protein regX3 [Mycobacterium tuberculosis T17] gi|289684726|gb|EFD52214.1| two component system sensor transduction protein regX3 [Mycobacterium tuberculosis 02_1987] gi|289708116|gb|EFD72132.1| two component sensory transduction protein regX3 [Mycobacterium tuberculosis GM 1503] gi|289712130|gb|EFD76142.1| two component system sensor transduction protein regX3 [Mycobacterium tuberculosis T85] gi|298493764|gb|EFI29058.1| two component sensory transduction protein regX3 [Mycobacterium tuberculosis 94_M4241A] gi|308327670|gb|EFP16521.1| two component system sensor protein regX3 [Mycobacterium tuberculosis SUMu002] gi|308347183|gb|EFP36034.1| two component system sensor protein regX3 [Mycobacterium tuberculosis SUMu007] gi|308351125|gb|EFP39976.1| two component system sensor protein regX3 [Mycobacterium tuberculosis SUMu008] gi|308355755|gb|EFP44606.1| two component system sensor protein regX3 [Mycobacterium tuberculosis SUMu009] gi|308359814|gb|EFP48665.1| two component system sensor protein regX3 [Mycobacterium tuberculosis SUMu010] gi|326902318|gb|EGE49251.1| two component system sensor protein regX3 [Mycobacterium tuberculosis W-148] gi|328457206|gb|AEB02629.1| two component system sensor protein regX3 [Mycobacterium tuberculosis KZN 4207] Length = 227 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 54/225 (24%), Positives = 101/225 (44%), Gaps = 9/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + D L +G A D+ ++ L G + Sbjct: 5 LIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLML--PGMSGTD 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + +RA S VP+I ++ S + + G DD V KP RE++AR+ A+ RR Sbjct: 63 VCKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDD 122 Query: 123 NNRAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 ++ GP+R+ + V G+ LP +E +LEYLM N G+ + + Q+ + Sbjct: 123 DSEMSDGVLESGPVRMDVERHVVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLIDRV 182 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 +G D + ++ H+ +LR K+ + + + R LGY ++ Sbjct: 183 WGA-DYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVRGLGYKLE 226 >gi|158317887|ref|YP_001510395.1| two component transcriptional regulator [Frankia sp. EAN1pec] gi|158113292|gb|ABW15489.1| two component transcriptional regulator, winged helix family [Frankia sp. EAN1pec] Length = 228 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 49/225 (21%), Positives = 90/225 (40%), Gaps = 8/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D D + +G + D+ ++ L G Sbjct: 6 LLVVEDEESFSDALSFMLEREGFEVAVVGDGPSALAEFDRHGADLILLDLML--PGLSGT 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117 E+ R +RA S VP+I ++ S + + G DD V KP R I A + Sbjct: 64 EVCRTLRARSTVPVIMLTARDSEIDKVVGLELGADDYVTKPFSARELVARIRAVLRRRVE 123 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 +VS+ E G +R+ + V G LP +E +LE + N G+ + + Q+ + Sbjct: 124 TEEVSDATLEVGRVRMDVERHVVTVDGSQVALPLKEFELLEMFLRNAGRVLTRGQLIDRV 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 +G D + ++ H+ +LR K+ + + R LGY + Sbjct: 184 WG-SDYVGDTKTLDVHVKRLRTKIEAEPGAPRHLVTVRGLGYKFE 227 >gi|307154473|ref|YP_003889857.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 7822] gi|306984701|gb|ADN16582.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7822] Length = 234 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 35/231 (15%), Positives = 78/231 (33%), Gaps = 12/231 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D + + + + + DV ++ L G +V Sbjct: 3 ILIVEDEPEIAQLIRETLERENFTCHIARTGLQALEFFGQLQPDVIVLDIMLPELDGLEV 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILAR 111 R ++ ++ + +G DD + KP E + Sbjct: 63 CTRIRQKPGTKDPYILMLTARGEEIDRIIGLSTGADDYLVKPFSPIELVARVRALLRRSL 122 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 N + + + + E+ L E +L M+ G+ ++T Sbjct: 123 RHGGQPNQVYRTNHFSVDLDQHLATRQLDNEESELLDLTTLEFNLLSTFMSYPGRVWSRT 182 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 Q+ ++G D +E VV++HI +LRKK+ + + + +GY + Sbjct: 183 QLIDKLWGN-DFFGDERVVDTHIRRLRKKIEPDPANPSFIKTVIGVGYKFE 232 >gi|154687605|ref|YP_001422766.1| putative two-component response regulator [Bacillus amyloliquefaciens FZB42] gi|154353456|gb|ABS75535.1| putative two-component response regulator [Bacillus amyloliquefaciens FZB42] Length = 225 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 49/222 (22%), Positives = 91/222 (40%), Gaps = 5/222 (2%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + ++ DD +++ + G + E L SA D+ ++ Sbjct: 3 VILVADDDRHIRELVRLMMEQSGFDVAEAEDGEAAVRLIESAPIDLIILDVM--MPKMDG 60 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ +R+ + +P++ ++ + F SG DD + KP E+ ARV A+ +R + Sbjct: 61 FEVSEAVRSFTDIPILMLTAKGETLDKVQGFTSGADDYLVKPFEPLELEARVKALLKRYR 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLP--RRERRILEYLMANRGKRVAKTQIFSAIY 178 ++ + T +G L RRE +L L K ++ Q+ I+ Sbjct: 121 ITAEKLLTIGTVTLDKQSRTVTRGGGAGLTLPRREFELLFKLAGYPNKTFSREQLIEDIW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G FD +E V+ HI +LR++ K + + R LGY Sbjct: 181 G-FDYEGDERTVDVHIKRLRERFPEKDYPFAIHTVRGLGYRF 221 >gi|78045188|ref|YP_358964.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans Z-2901] gi|77997303|gb|ABB16202.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans Z-2901] Length = 234 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 45/225 (20%), Positives = 89/225 (39%), Gaps = 10/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++I+D + + G +E + + D+ ++ L G E Sbjct: 5 LIIEDDRSIAELERDYLEVAGFLVEIAVNGDQGLKKALEEEYDLILLDLML--PGIDGFE 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121 + R +RA P++ +S + G DD + KP E++ARV A R + Sbjct: 63 VLRKVRAEKDTPVLLVSARREDIDKIRGLGLGADDYITKPFSPSELVARVKAHIGRYERL 122 Query: 122 -----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + E + + + R + L +E +L +L N + K ++F Sbjct: 123 TGGRKNQDLLEFPGLVIDTAARRVFAGDKEVNLTGKEFDLLLFLAKNPNRVFTKEELFER 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 I+G+ D + + V HI KLR+K+ + +++ +GY Sbjct: 183 IWGM-DSLGDLSTVTVHIRKLREKIEKDPSNPQYIETIWGVGYRF 226 >gi|304315710|ref|YP_003850855.1| transcriptional regulator [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777212|gb|ADL67771.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 227 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 40/224 (17%), Positives = 88/224 (39%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++DD + + +G + + ++ L G + Sbjct: 7 IYIVDDDRNICEIISLYLEKEGFATVRIGDGVTALNKIKEELPLLIILDLML--PGIDGM 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L + +R + VP+I ++ + + G DD + KP +E++ARV A+ RR + Sbjct: 65 TLCKEVRKFTDVPIIMLTAKGDTFDKVLGLEIGADDYIVKPFDGKELVARVKAVLRRYEH 124 Query: 122 SNNRAETGPIRVFSDG---RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 N ++ S + +GE L +E + +L + K + Q+ ++ Sbjct: 125 EENDGDSVTYPDLSISLSEYKVKYKGENVDLTPKELELFYFLCTHPNKVFTRDQLLENVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 G ++ + V+ HI +LR+K+ + + + +GY + Sbjct: 185 G-YEYMGDSRTVDVHIKRLREKIGDGPNWKL-TTVWGVGYKFEV 226 >gi|138897044|ref|YP_001127497.1| two-component response regulater [Geobacillus thermodenitrificans NG80-2] gi|196249865|ref|ZP_03148561.1| two component transcriptional regulator, winged helix family [Geobacillus sp. G11MC16] gi|134268557|gb|ABO68752.1| Two-component response regulater [Geobacillus thermodenitrificans NG80-2] gi|196210741|gb|EDY05504.1| two component transcriptional regulator, winged helix family [Geobacillus sp. G11MC16] Length = 237 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 49/229 (21%), Positives = 93/229 (40%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + E D+ ++ L K + Sbjct: 5 ILVVDDEKPIADILQFNLQKEGYEVICAYDGEEALQKVEETMPDLILLDIMLPLK--DGM 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R +P+I ++ S + + G DD V KP RE+LARV A RR Sbjct: 63 EVCREVRKKYDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHAQ 122 Query: 122 SNNRAETGPIRVF---------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + E D + +GE L RE +L YL + G+ + + Sbjct: 123 TATQEEEESETNEIVVGPLVIRPDAYVVQKRGETIELTHREFELLHYLAKHIGQVMTREH 182 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + ++G +D + V+ + +LR+K+ + + ++R +GY + Sbjct: 183 LLQTVWG-YDYYGDVRTVDVTVRRLREKIEDNPSHPSWIVTRRGVGYYL 230 >gi|289550550|ref|YP_003471454.1| Alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus lugdunensis HKU09-01] gi|289180082|gb|ADC87327.1| Alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus lugdunensis HKU09-01] Length = 236 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 48/231 (20%), Positives = 97/231 (41%), Gaps = 14/231 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + G +E E + D+ ++ L + + Sbjct: 5 ILVVDDEQSIVTLLKYNLETAGYIVEVAYDGEEALEKVEKVQPDLIVLDVML--PKKDGI 62 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ + IR+ VP++ ++ + + G DD + KP RE++ARV AI RR + Sbjct: 63 EVCKTIRSDKNLVPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRRSQ 122 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPL---------PRRERRILEYLMANRGKRVAKT 171 N A + ++ E F + +E +L YL+ +G+ + + Sbjct: 123 FVNEAANDAANEEDILIENIRIRPEFFEVYKDDELLELTPKEFELLLYLIERQGRVITRE 182 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221 + ++++ ++ A + +V+ HIS LR KL + + R LGY ++ Sbjct: 183 HMLNSVW-NYEFAGDSRIVDVHISHLRDKLEENPKQPKLIKTVRGLGYKLE 232 >gi|54027160|ref|YP_121402.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] gi|54018668|dbj|BAD60038.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] Length = 229 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 51/227 (22%), Positives = 99/227 (43%), Gaps = 11/227 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + D L +G + + D+ ++ L G + Sbjct: 5 LIVEDEESLADPLAFLLRKEGFEVTVVGDGPSALAEFDRSGADIVLLDLML--PGMSGTD 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + +R S VP+I ++ S + + G DD V KP RE++AR+ A+ RR Sbjct: 63 VCKQLRTRSGVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGAGD 122 Query: 123 NNRAETG-------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 P+R+ D V G+ LP +E +LEYL+ N G+ + + Q+ Sbjct: 123 ELDGNGESGVLEAGPVRMDVDRHTVMVNGKPVTLPLKEFDLLEYLLRNSGRVLTRGQLID 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 ++G D + ++ H+ +LR K+ + + + + R LGY ++ Sbjct: 183 RVWGA-DYVGDTKTLDVHVKRLRSKIEADPAKPEHLVTVRGLGYKLE 228 >gi|91975373|ref|YP_568032.1| winged helix family two component transcriptional regulator [Rhodopseudomonas palustris BisB5] gi|91681829|gb|ABE38131.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris BisB5] Length = 233 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 52/225 (23%), Positives = 93/225 (41%), Gaps = 8/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + DG +E + + D+ ++ L G + Sbjct: 5 ILVVEDEEALTTLLRYNLESDGYDVETVARGDDADTRMKERLPDLVVLDWML--PGLSGI 62 Query: 62 ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IY 116 EL R +RA S P+I ++ + +G DD + KP E+LARV Sbjct: 63 ELCRRLRARSDTKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLLRR 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + G + + D R G L E R+LE+ + + G+ ++ Q+ Sbjct: 123 AAPERLATVLTYGDLELDRDKRRVARSGRPIDLGPTEYRLLEFFLEHPGRVFSREQLLDG 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G D ++E V+ HI +LRK L DP+ + R GY++D Sbjct: 183 VWGR-DIYIDERTVDVHIGRLRKLLNPGREQDPIRTVRGAGYALD 226 >gi|255523369|ref|ZP_05390339.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296188303|ref|ZP_06856695.1| putative regulatory protein VanR [Clostridium carboxidivorans P7] gi|255513023|gb|EET89293.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296047429|gb|EFG86871.1| putative regulatory protein VanR [Clostridium carboxidivorans P7] Length = 230 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 46/227 (20%), Positives = 82/227 (36%), Gaps = 15/227 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +G S E D ++ G L Sbjct: 5 ILVVDDDKDIVKLITKSLSYEGFETIPAYSGEEALCALEENHIDFIILDIM--MPGMDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R IR P++ +S + + G DD + KP +E+ +R+ A +R++ Sbjct: 63 DVCRSIRKSYNTPILLLSARDKDIDKIVGLEIGADDYMTKPFSIQELTSRIRANFRKVDR 122 Query: 122 SNNRAETGPIRV---------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + L +E +IL LM N + + Q Sbjct: 123 LFKEWNELSPNRETTDSPLILNDKTFEAFLNNRKLNLSTKEFQILSMLMHNPNTVLTREQ 182 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 I+ ++G DE E N V HI +RKKL +D + + +GY Sbjct: 183 IYEYVWG--DEYGELNTVTVHIKNIRKKLG--PEYDFIKTIWGIGYK 225 >gi|116493525|ref|YP_805260.1| DNA-binding response regulator [Pediococcus pentosaceus ATCC 25745] gi|116103675|gb|ABJ68818.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Pediococcus pentosaceus ATCC 25745] Length = 233 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 47/227 (20%), Positives = 92/227 (40%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + E + D+ ++ L L Sbjct: 4 ILVVDDEKPISDIVKFNLDKEGYDVVTAYDGEEALAQVEEEKPDLILLDLML--PKIDGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-------ILARVAA 114 E+ R +RA +P+I ++ S + + G DD V KP +RE L R Sbjct: 62 EVARQVRAKHNIPIIMVTAKDSELDKVVGLELGADDYVTKPFSNRELVARVKANLRRQDQ 121 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + + N + GP+ + SD G L RE +L YL + G+ + + + Sbjct: 122 LQQDDETVKNNIKIGPLVINSDSYSVTRDGMQLDLTHREFELLHYLAQHTGQVMTREHLL 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++G +D + V+ + +LR+K+ + ++R +GY + Sbjct: 182 QTVWG-YDYFGDVRTVDVTVRRLREKIEETPGNPQILVTRRGVGYYL 227 >gi|300744319|ref|ZP_07073338.1| DNA-binding response regulator RegX3 [Rothia dentocariosa M567] gi|311112934|ref|YP_003984156.1| response regulator [Rothia dentocariosa ATCC 17931] gi|300380044|gb|EFJ76608.1| DNA-binding response regulator RegX3 [Rothia dentocariosa M567] gi|310944428|gb|ADP40722.1| response regulator [Rothia dentocariosa ATCC 17931] Length = 228 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 57/227 (25%), Positives = 102/227 (44%), Gaps = 10/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + D L G +G + ++ D+ ++ L G + Sbjct: 4 ILLVEDEEALYDPLSFLLGREGFTPVVVDNGLDAVPAFEREDPDLVLLDVML--PGMSGM 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IRA S VP+I ++ S + + G DD V KP RE++AR+ A+ RR Sbjct: 62 EVCKKIRASSSVPIIMLTAKDSEIDKVLGLELGADDYVTKPYSSRELMARIRAVLRRQSP 121 Query: 122 SNNRAETG------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + P+R+ + V GE +P +E +LE L+ N G+ + + Q+ Sbjct: 122 DHGDEQDQKALAAGPVRMDVERHVVTVDGEEVSMPLKEFELLEILLRNTGRVMTRAQLIE 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221 ++G D + ++ HI +LR K+ K V + R LGY + Sbjct: 182 RVWGA-DYVGDTKTLDVHIKRLRSKIEPKASSPRYVITVRGLGYKFE 227 >gi|205372741|ref|ZP_03225551.1| hypothetical protein Bcoam_04690 [Bacillus coahuilensis m4-4] Length = 234 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 48/231 (20%), Positives = 87/231 (37%), Gaps = 14/231 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR--EDVSAIEAFLIGKGEK 59 ++++D V F +G + L S D ++ L G Sbjct: 3 ILVVEDNESVCSMIEMFFLKEGWEGAFATDGKEGWALFESNPTGYDFILLDWML--PGMD 60 Query: 60 VLELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 + L R IR VP+I ++ S + + G DD V KP ++AR+ A+ RR Sbjct: 61 GITLCRKIRGVTKNVPVIMLTAKDSDSDQVLGLEMGADDYVTKPFSPLTLMARIKAVRRR 120 Query: 119 LKVS-------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + + + T + L +E +L Y + + + + Sbjct: 121 YEEIQPKGASLHYKESTYFKISKETREIFYQDTAIDGLTPKEFDLLYYFIHHPKQVFTRE 180 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 Q+ I+G ++ +E V+ HI +LRKK+R + + +GY D Sbjct: 181 QLLDRIWG-YEYYGDERTVDVHIKRLRKKIRTATHP-FIHTVWGVGYKFDE 229 >gi|91680588|emb|CAJ45044.1| PhoP protein [Streptomyces natalensis] Length = 223 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 50/224 (22%), Positives = 92/224 (41%), Gaps = 8/224 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D D + +G + + D+ ++ L G E Sbjct: 2 LVVEDEESFSDALSYMLRKEGFEVAIAATGPDGLDEFERNGADLVLLDLML--PGLPGTE 59 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYRR 118 + R +R S VP+I ++ S + + G DD V KP R I A + Sbjct: 60 VCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGEP 119 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 +V+ E GP+R+ D V G LP +E +LE L+ N G+ + + Q+ ++ Sbjct: 120 EEVAPQALEAGPVRMDVDRHVVTVSGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRVW 179 Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 G D + ++ H+ +LR K+ + + + R LGY + Sbjct: 180 GA-DYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFE 222 >gi|297200596|ref|ZP_06917993.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] gi|297147681|gb|EDY53756.2| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] Length = 226 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 52/224 (23%), Positives = 95/224 (42%), Gaps = 8/224 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D D + +G + + D+ ++ L G E Sbjct: 5 LVVEDEESFSDALSYMLRKEGFEVAIAATGPDGLDEFERNGADLVLLDLML--PGLPGTE 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +R S VP+I ++ S + + G DD V KP RE++AR+ A+ RR Sbjct: 63 VCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGEP 122 Query: 123 NNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 GP+R+ D V G LP +E +LE L+ N G+ + + Q+ ++ Sbjct: 123 EEVTPAALEAGPVRMDVDRHVVTVSGSKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRVW 182 Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 G D + ++ H+ +LR K+ + + + R LGY + Sbjct: 183 GA-DYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFE 225 >gi|222094028|ref|YP_002528080.1| DNA-binding response regulator [Bacillus cereus Q1] gi|229194647|ref|ZP_04321443.1| Two-component response regulator [Bacillus cereus m1293] gi|221238078|gb|ACM10788.1| DNA-binding response regulator [Bacillus cereus Q1] gi|228588840|gb|EEK46862.1| Two-component response regulator [Bacillus cereus m1293] Length = 233 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 45/230 (19%), Positives = 89/230 (38%), Gaps = 11/230 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ ++G + E L + ++ + Sbjct: 6 ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIM--MPKVDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + +R ++P+I +S + +G DD V KP + E++AR+ + RR Sbjct: 64 HMCMKVREEKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMK 123 Query: 122 SNNRAETG-------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N + +++ V+GE L RE ILE L N G + QI+ Sbjct: 124 MNGFSIQNEDELEIGEMKINISTHKVIVEGEEVKLTPREFSILELLARNPGMVFSAEQIY 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223 ++ +N V HI K+R+K+ + + +GY I+ + Sbjct: 184 EKVWNERSFQ-SDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGYKIEKD 232 >gi|237736770|ref|ZP_04567251.1| two-component system response regulator [Fusobacterium mortiferum ATCC 9817] gi|229420632|gb|EEO35679.1| two-component system response regulator [Fusobacterium mortiferum ATCC 9817] Length = 223 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 42/221 (19%), Positives = 100/221 (45%), Gaps = 8/221 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ +G + E L D+ ++ L + Sbjct: 9 ILIVDDEEQIRNILRMYLVKEGYEVSEAEDGEKGLKLFYEKPFDLVILDVML--PKKDGW 66 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120 + R I+ +++ P+I ++ + + F+ G DD + KP +++ +LARV + + + Sbjct: 67 SILREIKKYTETPVIMLTARDDSEDEVFGFEMGADDYITKPFNNKVLLARVKSLLRKTNN 126 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + E G + + L +E +L YL+ N +++ ++ + ++G Sbjct: 127 MVESIIEIGDLVINDTSHSVSNSKGEIELAPKEYDLLVYLIKNNKIALSREKLLNEVWG- 185 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +D ++ +++HI LRKK+ G + + + R +GY +D Sbjct: 186 YDFLGDDRTIDTHIKNLRKKI----GKNAIKTIRGIGYKLD 222 >gi|145298254|ref|YP_001141095.1| two-component system response regulator PhoB [Aeromonas salmonicida subsp. salmonicida A449] gi|142851026|gb|ABO89347.1| two-component system response regulator PhoB [Aeromonas salmonicida subsp. salmonicida A449] Length = 229 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 34/222 (15%), Positives = 90/222 (40%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++++D A +++ + G ++ ++ + G G + Sbjct: 5 ILVVEDEAPIREMLCFVLEQKGYETIEAEDYADGLAKVCEPYPELIVLDWMMPGGSGIQF 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ + Q+P++ ++ + + ++G DD + KP +E+ AR+ A+ RR+ Sbjct: 65 IKQLKQDEVTRQIPVVMLTARGEEEDKVRGLEAGADDYITKPFSPKELTARLHAVMRRVS 124 Query: 121 VSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++ ++ + + E ++L + M + + ++ Q+ + ++ Sbjct: 125 PTSVDEVIEVQGLKLDPVSHRVSAEERALDMGPTEFKLLHFFMTHPERVYSREQLLNNVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G + VE+ V+ HI +LRK + + + R GY Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKAIEETGHDRLIQTVRGAGYRF 225 >gi|30261986|ref|NP_844363.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47777985|ref|YP_018600.2| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|30256612|gb|AAP25849.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47551690|gb|AAT31075.2| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] Length = 228 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 36/222 (16%), Positives = 94/222 (42%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ +G + + D+ ++ Sbjct: 8 ILIVDDDPHIRELVSVFLECEGFQTYEAIDGLDALQKINQVKVDMVILDIM--MPNMDGF 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ +R + +P++ ++ + F G DD + KP E++ RV A+ +R ++ Sbjct: 66 DVCFELRKYYDIPILILTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 125 Query: 122 SNNRAETGPIR-VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + +++ + + + + LP +E +L L + G+ ++ Q+ ++G Sbjct: 126 TVSQSIQVGTVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG- 184 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D E ++ HI++LR+K + + + + R LGY ++ Sbjct: 185 YDFEGNERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLEV 226 >gi|291533797|emb|CBL06910.1| two component transcriptional regulator, winged helix family [Megamonas hypermegale ART12/1] Length = 230 Score = 151 bits (382), Expect = 6e-35, Method: Composition-based stats. Identities = 44/224 (19%), Positives = 85/224 (37%), Gaps = 7/224 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + A +G + + R D+ ++ E Sbjct: 4 LIVDDNKQIISILEAYAKKEGYQTVIAVDGQEALDVFQRERPDIILLDVM--MPKIDGFE 61 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R+IR S VP+I I+ + + G DD + KP EI+AR+ AI RR++ Sbjct: 62 VCRVIRKTSNVPIIMITARGEDFEKIMGLEIGADDYIVKPFSPGEIMARIKAILRRIQPK 121 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPL---PRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + ++E IL L + + ++ + + ++G Sbjct: 122 TENLQVFSYDNLQINLVDYTVSINNKVLSLTKKEIEILWTLATKKDRVFSRDMLLNKLWG 181 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSIDW 222 +D + V+SHI +LR KL + + +GY + Sbjct: 182 -YDYIGDSRTVDSHIKRLRAKLEKYPHGKWEIKTIWGVGYKFEV 224 >gi|146321223|ref|YP_001200934.1| response regulator [Streptococcus suis 98HAH33] gi|253753905|ref|YP_003027046.1| response regulator protein [Streptococcus suis P1/7] gi|253755220|ref|YP_003028360.1| response regulator protein [Streptococcus suis BM407] gi|330832445|ref|YP_004401270.1| response regulator [Streptococcus suis ST3] gi|145692029|gb|ABP92534.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Streptococcus suis 98HAH33] gi|251817684|emb|CAZ55432.1| response regulator protein [Streptococcus suis BM407] gi|251820151|emb|CAR46488.1| response regulator protein [Streptococcus suis P1/7] gi|292558663|gb|ADE31664.1| Response regulator receiver: Transcriptional regulatory protein, C-terminal [Streptococcus suis GZ1] gi|319758447|gb|ADV70389.1| response regulator [Streptococcus suis JS14] gi|329306668|gb|AEB81084.1| response regulator [Streptococcus suis ST3] Length = 234 Score = 151 bits (382), Expect = 6e-35, Method: Composition-based stats. Identities = 48/233 (20%), Positives = 92/233 (39%), Gaps = 14/233 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + + + D+ ++ L L Sbjct: 4 ILIVDDEKPISDIIKFNMTREGYEVVTAFDGREALEVFEAEFPDIVILDLML--PELDGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-------- 113 E+ R IR S VP++ +S S + + G DD V KP +RE+ ARV Sbjct: 62 EVARTIRKTSNVPILMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELQARVKALLRRSEL 121 Query: 114 --AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 G + + D + G+ L RE +L +L + G+ + + Sbjct: 122 AETQTNIESTGTPELVIGDLVILPDAFVAKKHGKELELTHREFELLHHLAKHLGQVMTRE 181 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223 + ++G +D + V+ I +LR+K+ + + + ++R +GY I N Sbjct: 182 HLLETVWG-YDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYFIKGN 233 >gi|29830515|ref|NP_825149.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|290959412|ref|YP_003490594.1| phosphate two component system response regulator [Streptomyces scabiei 87.22] gi|29607627|dbj|BAC71684.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] gi|260648938|emb|CBG72052.1| phosphate two component system response regulator [Streptomyces scabiei 87.22] Length = 223 Score = 151 bits (382), Expect = 6e-35, Method: Composition-based stats. Identities = 52/224 (23%), Positives = 95/224 (42%), Gaps = 8/224 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D D + +G + + D+ ++ L G E Sbjct: 2 LVVEDEESFSDALSYMLRKEGFEVAIATTGPDGLDEFERNGADLVLLDLML--PGLPGTE 59 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +R S VP+I ++ S + + G DD V KP RE++AR+ A+ RR Sbjct: 60 VCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGEP 119 Query: 123 NNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 GP+R+ D V G LP +E +LE L+ N G+ + + Q+ ++ Sbjct: 120 EEVTPAALEAGPVRMDVDRHVVTVSGSKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRVW 179 Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 G D + ++ H+ +LR K+ + + + R LGY + Sbjct: 180 GA-DYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFE 222 >gi|254250739|ref|ZP_04944058.1| Heavy metal response regulator [Burkholderia cenocepacia PC184] gi|124879873|gb|EAY67229.1| Heavy metal response regulator [Burkholderia cenocepacia PC184] Length = 225 Score = 151 bits (382), Expect = 6e-35, Method: Composition-based stats. Identities = 44/221 (19%), Positives = 89/221 (40%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + G S++ L R DV ++ L Sbjct: 3 ILIVEDEPKTGAYLKKGLEESGFSVDLAKDGAEGLMLAQEERYDVIVLDVML--PVLDGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120 + + +R P++ ++ +Q + + G DD + KP E+LAR+ R Sbjct: 61 GVLKRLRETHTTPVLFLTARDDVQDRVHGLELGADDYLVKPFAFVELLARIRTLARRGPP 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 G + + R + L RE +L+ L +G+ +++TQI S ++ + Sbjct: 121 RETEHLTVGDLEIDVVRRRVKRGATRIDLTPREFSLLQLLARRQGEVLSRTQIASYVWDM 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + NVVE I +LR K+ + + + R +GY ++ Sbjct: 181 -NFDSDTNVVEVAIRRLRAKIDDAFPVKLIHTVRGVGYVLE 220 >gi|257469232|ref|ZP_05633326.1| two component transcriptional regulator [Fusobacterium ulcerans ATCC 49185] gi|317063479|ref|ZP_07927964.1| two component transcriptional regulator [Fusobacterium ulcerans ATCC 49185] gi|313689155|gb|EFS25990.1| two component transcriptional regulator [Fusobacterium ulcerans ATCC 49185] Length = 220 Score = 151 bits (382), Expect = 6e-35, Method: Composition-based stats. Identities = 45/221 (20%), Positives = 99/221 (44%), Gaps = 8/221 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D +++ +G + E L D+ ++ L + Sbjct: 4 ILIVEDEMEIRNILKLYLLKEGYDVTEAEDGEVAIKLFYEKPFDLVILDIML--PKKDGW 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R I+ +S VP++ +S + L F+ G D+ + KP +++ +LAR+ A+ + Sbjct: 62 SVLREIKKYSSVPVMILSARDDDEDELFGFEIGTDEYITKPFNNKILLARIKALIKNTSN 121 Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + G I + V GE L +E +L YL+ N +++ ++ + ++G Sbjct: 122 NTDHIIELGKIIINDTSHTVTVDGEEVILAPKEYELLIYLIKNHKIALSRDKMLTEVWG- 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +D + +++HI LRKKL + + + R +GY + Sbjct: 181 YDFPGSDRTIDTHIKNLRKKLGE----ECIKTVRGIGYKFE 217 >gi|254421179|ref|ZP_05034897.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] gi|196188668|gb|EDX83632.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] Length = 242 Score = 151 bits (382), Expect = 6e-35, Method: Composition-based stats. Identities = 47/228 (20%), Positives = 96/228 (42%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++ G + E + D+ ++ Sbjct: 8 ILVVDDEASIRRILETRLSMIGYDVVTAADGEEALDTFRNTIPDLVVLDVM--MPKLDGY 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 + + +R S +P+I ++ + + + G DD V KP +E+ AR+ ++ RR++ Sbjct: 66 GVCQELRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVEK 125 Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 S+ IR+ ++ R E L E +LE L++ G+ ++++I Sbjct: 126 TGASGIPSSGVITINNIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEIL 185 Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 ++G + V+ VV+ HIS+LR KL + + + + R GY Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLF 233 >gi|330684068|gb|EGG95823.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus epidermidis VCU121] Length = 236 Score = 151 bits (382), Expect = 6e-35, Method: Composition-based stats. Identities = 48/230 (20%), Positives = 97/230 (42%), Gaps = 14/230 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + G +E E S++ D+ ++ L + +E Sbjct: 6 LVVDDEQSIVTLLKYNLETAGYIVEVAYDGEEALQKVESSQPDLIVLDVML--PKKDGIE 63 Query: 63 LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + IR+ VP++ ++ + + G DD + KP RE++ARV AI RR + Sbjct: 64 VCKTIRSDKNLVPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRRSQF 123 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPL---------PRRERRILEYLMANRGKRVAKTQ 172 N ++ E F + +E +L YL+ +G+ + + Sbjct: 124 VNEVEHNETDDEDIIIDSIRIRPEFFEVYKDDELLELTPKEFELLLYLIERQGRVITREH 183 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221 + ++++ ++ A + +V+ HIS LR KL + + R LGY ++ Sbjct: 184 MLNSVW-NYEFAGDSRIVDVHISHLRDKLEENPKQPKLIKTVRGLGYKLE 232 >gi|328913554|gb|AEB65150.1| Uncharacterized transcriptional regulatory protein [Bacillus amyloliquefaciens LL3] Length = 250 Score = 151 bits (382), Expect = 6e-35, Method: Composition-based stats. Identities = 48/222 (21%), Positives = 89/222 (40%), Gaps = 5/222 (2%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + ++ DD +++ + G + E L S D+ ++ Sbjct: 28 VILVADDDRHIRELVRLMMEQSGFDVAEAEDGEAAVQLIESTHIDLIILDVM--MPKMDG 85 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ +R+ + +P++ ++ + F SG DD + KP E+ ARV A+ +R + Sbjct: 86 FEVSEAVRSFTDIPILMLTAKGETLDKVQGFTSGADDYLVKPFEPLELEARVKALLKRYR 145 Query: 121 VSNNRAETGPIRVF--SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++ + T G LPRRE +L L K ++ + I+ Sbjct: 146 ITAEKLLTIGTVTLDKQSRTVTRGGGSGMTLPRREFELLFKLAGYPNKTFSREHLIEDIW 205 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G FD +E V+ HI +LR++ K + + R LGY Sbjct: 206 G-FDYEGDERTVDVHIKRLRERFPEKDYPFAIHTVRGLGYRF 246 >gi|323699409|ref|ZP_08111321.1| two component transcriptional regulator, winged helix family [Desulfovibrio sp. ND132] gi|323459341|gb|EGB15206.1| two component transcriptional regulator, winged helix family [Desulfovibrio desulfuricans ND132] Length = 228 Score = 151 bits (382), Expect = 6e-35, Method: Composition-based stats. Identities = 39/226 (17%), Positives = 85/226 (37%), Gaps = 12/226 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++ G + + L + + D+ ++ G L Sbjct: 6 ILVVEDHRDTRELLKYNLTAAGFDVAAAEDGQLGLNLAHAFKPDIILLDLM--MPGTDGL 63 Query: 62 ELPRII---RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAA 114 E+ R + A +++P+I ++ + + G DD V KP R I A + Sbjct: 64 EVCRQLKGDPATARIPVIMLTAKGEEVDKIVGLELGADDYVVKPFSPRELVLRIKAILRR 123 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + E +R+ + + GE L E ++L L++ GK + + Sbjct: 124 YGAPEPNAPKLWEREGLRIDFEAHQITIDGEETALTATEFKLLTVLVSGAGKVQTRDNLL 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ V++H+ +LR+KL +++ R +GY Sbjct: 184 DTVWDTH-FEGYSRTVDTHVRRLRQKLGPY--APWIETIRGVGYRF 226 >gi|220928969|ref|YP_002505878.1| transcriptional regulator [Clostridium cellulolyticum H10] gi|219999297|gb|ACL75898.1| two component transcriptional regulator, winged helix family [Clostridium cellulolyticum H10] Length = 237 Score = 151 bits (382), Expect = 6e-35, Method: Composition-based stats. Identities = 51/229 (22%), Positives = 94/229 (41%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD V D DG + + L +S D+ ++ L L Sbjct: 6 ILIIDDETEVIDLIKLYLLKDGFQVITATNGSTALELTNSHNPDLIILDVLL--PDTNGL 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL + +R ++ P++ +S + + G DD + KP E++AR+ A RR ++ Sbjct: 64 ELCQNLRKITESPILFLSCKCTDMDKILGLTVGGDDYITKPFSPSELVARINAHLRRNRI 123 Query: 122 SNNRAETGP--------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 N+ + + + V + L +E IL L + + TQ+ Sbjct: 124 LTNQTNSADLSILNIAGLTIDFANYTLYVDDKPVVLTVKEFEILSLLSQHPNMVFSLTQL 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 + I+G+ D + V HIS LRKK+ + + + + +GY +D Sbjct: 184 YDHIWGV-DNIGDTRTVMVHISNLRKKIEKDPANPKLIVTIKGIGYKLD 231 >gi|296138387|ref|YP_003645630.1| two component transcriptional regulator, winged helix family [Tsukamurella paurometabola DSM 20162] gi|296026521|gb|ADG77291.1| two component transcriptional regulator, winged helix family [Tsukamurella paurometabola DSM 20162] Length = 229 Score = 151 bits (382), Expect = 6e-35, Method: Composition-based stats. Identities = 56/227 (24%), Positives = 102/227 (44%), Gaps = 11/227 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + D L +G SA D+ ++ L G + Sbjct: 5 LIVEDEESLADPLAFLLRKEGFETTVVTDGAEALRHFDSAGADIVLLDLML--PGMSGTD 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121 + + +RA S VP+I ++ S + + G DD V KP RE++AR+ A+ RR Sbjct: 63 VCKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGADT 122 Query: 122 ------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + E GP+R+ + V GE LP +E +LEYL+ N G+ + + Q+ Sbjct: 123 AGGEGLDDGVLEGGPVRMDVERHVVTVAGEAVTLPLKEFDLLEYLLRNSGRVLTRGQLID 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 ++G D + ++ H+ +LR K+ + + + R LGY ++ Sbjct: 183 RVWGA-DYVGDTKTLDVHVKRLRSKIEADPANPKHLVTVRGLGYKLE 228 >gi|126173616|ref|YP_001049765.1| two component transcriptional regulator [Shewanella baltica OS155] gi|152999896|ref|YP_001365577.1| two component transcriptional regulator [Shewanella baltica OS185] gi|160874521|ref|YP_001553837.1| two component transcriptional regulator [Shewanella baltica OS195] gi|217974139|ref|YP_002358890.1| two component transcriptional regulator PhoB, winged helix family [Shewanella baltica OS223] gi|304409488|ref|ZP_07391108.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS183] gi|307303846|ref|ZP_07583599.1| two component transcriptional regulator, winged helix family [Shewanella baltica BA175] gi|125996821|gb|ABN60896.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS155] gi|151364514|gb|ABS07514.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS185] gi|160860043|gb|ABX48577.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS195] gi|217499274|gb|ACK47467.1| two component transcriptional regulator PhoB, winged helix family [Shewanella baltica OS223] gi|304352006|gb|EFM16404.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS183] gi|306912744|gb|EFN43167.1| two component transcriptional regulator, winged helix family [Shewanella baltica BA175] gi|315266760|gb|ADT93613.1| two component transcriptional regulator PhoB, winged helix family [Shewanella baltica OS678] Length = 229 Score = 151 bits (382), Expect = 6e-35, Method: Composition-based stats. Identities = 34/224 (15%), Positives = 83/224 (37%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D +++ + G + + L D+ ++ G + Sbjct: 5 ILIVEDELAIREMLTFVMEQHGFTTSAAEDFDSAIALLKEPYPDLILLDWM--FPGGSGI 62 Query: 62 ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIY 116 +L + ++ Q+P+I ++ + + + G DD + KP +E+ + Sbjct: 63 QLAKRLKQDEFTRQIPIIMLTARGEEEDKVKGLEVGADDYITKPFSPKELVARIKAVLRR 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + + V V + E R+L + M + + ++ Q+ Sbjct: 123 SAPTRLEETIDVQGLMLDPVSHRVSVGDTVLDMGPTEFRLLHFFMTHPERVYSREQLLDN 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + VE+ V+ HI +LRK + + + R GY Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKAVEESGHDRLIQTVRGAGYRF 225 >gi|302527318|ref|ZP_07279660.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. AA4] gi|302436213|gb|EFL08029.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. AA4] Length = 230 Score = 151 bits (382), Expect = 6e-35, Method: Composition-based stats. Identities = 45/221 (20%), Positives = 86/221 (38%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V++ ++ + R D+ ++ L Sbjct: 10 LLVVDDEPAVREALTDALETQSYAVHTACDGAEALRAVADLRPDLILLDVM--MPALDGL 67 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R +R A + P++ ++ + Q +D D+G DD V KP E+ AR+ A+ RR + Sbjct: 68 AVCRALRSAGDRTPIVALTARTAAQDRIDGLDAGADDYVLKPYDLGELFARIRALLRRTR 127 Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + R V E +L L+ N G+ + + I ++G Sbjct: 128 DVGGDRLAFADLTLDEATRQGVRGSRVIQFSETEFALLALLVRNAGQVLTREIITDRVWG 187 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D N V+ ++ LR+KL V + R +GY + Sbjct: 188 -YDFGPSSNSVDVYVRYLRRKLEADGEPRLVHTVRGIGYQL 227 >gi|297563243|ref|YP_003682217.1| two component transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296847691|gb|ADH69711.1| two component transcriptional regulator, winged helix family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 231 Score = 151 bits (382), Expect = 6e-35, Method: Composition-based stats. Identities = 49/224 (21%), Positives = 92/224 (41%), Gaps = 8/224 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D D + +G + + D+ ++ L G E Sbjct: 5 LVVEDEESYSDALSYMLRKEGFEVAVAPTGTVALETFDRTGADLVLLDLML--PGLSGTE 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYRR 118 + R +R S VP+I ++ S + + G DD V KP R I A + Sbjct: 63 VCRTLRQKSNVPVIMLTAKDSEIDKVVGLELGADDYVTKPFSSRELVARIRAVLRRRGED 122 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 V E GP+R+ + V+G+ LP +E +LE L+ N G+ + + Q+ ++ Sbjct: 123 EVVLPAALEAGPVRMDVERHVVTVRGDNVQLPLKEFELLEVLLRNAGRVLTRMQLIDRVW 182 Query: 179 GLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221 G D + ++ H+ +LR K+ + + + R LGY + Sbjct: 183 GA-DYVGDTKTLDVHVKRLRAKIEEDPGSPRYIVTVRGLGYKFE 225 >gi|218885985|ref|YP_002435306.1| two component transcriptional regulator, winged helix family [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218756939|gb|ACL07838.1| two component transcriptional regulator, winged helix family [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 230 Score = 151 bits (382), Expect = 6e-35, Method: Composition-based stats. Identities = 43/225 (19%), Positives = 91/225 (40%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D + F G + + + + + ++ L G V Sbjct: 6 ILVVEDDEDILQLLTFTFESAGFEVRTATTGREGLEIALRQKPALVLLDLMLPGMSGLDV 65 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + + VP+I ++ + + G DD V KP RE++ R+ A+ +R + Sbjct: 66 CRELKRMPETEDVPVIMLTARGEEVDRIVGLELGADDYVVKPFSPRELVLRIRAVLKRAQ 125 Query: 121 VSNNRAETGPIRVFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + ++ D EV GE L E R+L L+ NRG+ + Q+ + Sbjct: 126 GVAENPQRSQWQIDGLALDLDAHRVEVDGEEAALTATEFRLLAELVRNRGRVRTRDQLLN 185 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G ++ V++H+ +LR+K+ +++ R +GY Sbjct: 186 TVWG-YEFEGYARTVDTHVRRLRQKIG--GYAAMIETIRGVGYRF 227 >gi|148240584|ref|YP_001225971.1| two-component system response regulator [Synechococcus sp. WH 7803] gi|147849123|emb|CAK24674.1| Two-component system response regulator [Synechococcus sp. WH 7803] Length = 248 Score = 151 bits (382), Expect = 6e-35, Method: Composition-based stats. Identities = 43/228 (18%), Positives = 91/228 (39%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++ G ++ D+ ++ Sbjct: 11 ILVVDDEASIRRILETRLSMIGYNVVTACDGTEALECFQECEPDLVVLDVM--MPKLDGY 68 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + +R S VP++ ++ + + + G DD V KP +E+ AR+ + RR++ Sbjct: 69 GVCQELRKESDVPIVMLTALGDVADRITGLELGADDYVIKPFSPKELEARIRCVLRRVEK 128 Query: 122 SNNRAETGPI-------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + ++ ++ R E L E +LE L++ G+ ++ +I Sbjct: 129 EHAAGIPNTGLIKVSDLKIDTNKRQVFRADERIRLTGMEFSLLELLVSRSGEPFSRGEIL 188 Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 ++G + V+ VV+ HIS+LR KL + + + + R GY Sbjct: 189 KEVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGYLF 236 >gi|186682106|ref|YP_001865302.1| two component transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186464558|gb|ACC80359.1| two component transcriptional regulator, winged helix family [Nostoc punctiforme PCC 73102] Length = 226 Score = 151 bits (382), Expect = 6e-35, Method: Composition-based stats. Identities = 50/221 (22%), Positives = 99/221 (44%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + +G + + L + D++ ++ L G L Sbjct: 5 ILLVEDEVKLARFVELELSSEGYQVSVAHDGIAGLTLARDSSPDLAILDWML--PGLTGL 62 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119 E+ R +RA S VP+I ++ + + D+G DD V KP E+LAR+ A R Sbjct: 63 EICRRLRATGSTVPVILLTAKDEVSDRVAGLDAGADDYVVKPFSIEELLARIRAHLRRTQ 122 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + + + + + R+ + L +E +LEYL+++ + + QI ++G Sbjct: 123 ETAEDLLQFEDLSLNRRTREVFREKRSIELTAKEFDLLEYLLSHPRQVFTRDQILEKVWG 182 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D + N++E +I LR KL + + R +GY++ Sbjct: 183 -YDFMGDSNIIEVYIRYLRLKLEENNEKRLIHTVRGVGYAL 222 >gi|289550734|ref|YP_003471638.1| Staphylococcal respiratory response protein SrrA [Staphylococcus lugdunensis HKU09-01] gi|315658230|ref|ZP_07911102.1| response regulator [Staphylococcus lugdunensis M23590] gi|289180266|gb|ADC87511.1| Staphylococcal respiratory response protein SrrA [Staphylococcus lugdunensis HKU09-01] gi|315496559|gb|EFU84882.1| response regulator [Staphylococcus lugdunensis M23590] Length = 241 Score = 151 bits (382), Expect = 6e-35, Method: Composition-based stats. Identities = 35/232 (15%), Positives = 86/232 (37%), Gaps = 14/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ + ++ + + L ++ L + Sbjct: 5 ILIVDDEDRIRRLLKLYLERESFNIHEASDGKEAYELAMDHNYACILLDLML--PEMDGI 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112 E+ +R H P+I ++ ++ F+SG DD + KP RE + Sbjct: 63 EVASKLREHKDTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQS 122 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + + + E + + +D + L +E +L YL K + Q Sbjct: 123 TSAEQSEPHARDIIEFNHLLIDNDAHRVLADNQQVNLTPKEYELLIYLAKTPNKVFDREQ 182 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSIDW 222 + ++ ++ + V++H+ +LR+KL ++ + + +GY + Sbjct: 183 LLKEVW-HYEFYGDLRTVDTHVKRLREKLNRVSEDAAQMIQTVWGVGYKFEV 233 >gi|331266318|ref|YP_004325948.1| DNA-binding response regulator, OmpR family [Streptococcus oralis Uo5] gi|326682990|emb|CBZ00607.1| DNA-binding response regulator, OmpR family [Streptococcus oralis Uo5] Length = 235 Score = 151 bits (382), Expect = 6e-35, Method: Composition-based stats. Identities = 49/234 (20%), Positives = 97/234 (41%), Gaps = 15/234 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + + L + + D+ ++ L L Sbjct: 4 ILIVDDEKPISDIIKFNMAKEGYEVVTAFNGREAIELFEAEQPDIIILDLML--PEIDGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-------- 113 E+ + IR S VP+I +S S + + G DD V KP +RE+ ARV Sbjct: 62 EVAKAIRKTSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTDI 121 Query: 114 ---AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + + G + + D + GE L RE +L +L ++ G+ + + Sbjct: 122 VSVDSQESDEKKTQPLQIGDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHIGQVITR 181 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223 + ++G +D + V+ I +LR+K+ + + + ++R +GY + N Sbjct: 182 EHLLETVWG-YDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 234 >gi|253574045|ref|ZP_04851387.1| two component transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251846522|gb|EES74528.1| two component transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 233 Score = 151 bits (382), Expect = 6e-35, Method: Composition-based stats. Identities = 48/229 (20%), Positives = 85/229 (37%), Gaps = 13/229 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++ DD + D +G ++ + + + D++ ++ E Sbjct: 7 LIADDEPEIADLIELHLAREGYRCIKASNGQEALDVIQTQSVDLAILDIM--MPKIDGYE 64 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR +P+I +S + + G DD + KP + E++ARV A RR Sbjct: 65 VTRQIREKHHLPIIFLSAKATDLDKITGLVRGADDYMTKPFNPMELVARVNAQLRRFIQL 124 Query: 123 NNRAETGPIRV---------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 N + R + GE L +E IL L + K + I Sbjct: 125 NPSVAGPTDEPVLEAGGLVIHPEHRTVFLYGEPVELTPKEFDILVLLANHPKKVFSSEHI 184 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221 F ++G N V HI LRKKL ++ + + +GY+ + Sbjct: 185 FEKVWGEAYYEGG-NTVMVHIRSLRKKLGEDRHKNKLIKTVWGVGYTFN 232 >gi|227364325|ref|ZP_03848418.1| DNA-binding response regulator [Lactobacillus reuteri MM2-3] gi|227543739|ref|ZP_03973788.1| DNA-binding response regulator [Lactobacillus reuteri CF48-3A] gi|300908804|ref|ZP_07126267.1| response regulator [Lactobacillus reuteri SD2112] gi|325683524|ref|ZP_08163040.1| DNA-binding response regulator [Lactobacillus reuteri MM4-1A] gi|227070638|gb|EEI08968.1| DNA-binding response regulator [Lactobacillus reuteri MM2-3] gi|227186307|gb|EEI66378.1| DNA-binding response regulator [Lactobacillus reuteri CF48-3A] gi|300894211|gb|EFK87569.1| response regulator [Lactobacillus reuteri SD2112] gi|324977874|gb|EGC14825.1| DNA-binding response regulator [Lactobacillus reuteri MM4-1A] Length = 241 Score = 151 bits (382), Expect = 6e-35, Method: Composition-based stats. Identities = 48/228 (21%), Positives = 98/228 (42%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + E + D+ ++ L L Sbjct: 11 ILVVDDEKPISDIIKFNLEKEGYEVVVAYDGEAALEQVEAENPDLIILDLML--PKIDGL 68 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 E+ + +RA +P+I ++ S + + G DD V KP +RE++ARV A RR Sbjct: 69 EVAKRVRAKHTMPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQAT 128 Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + +N + G + + + +GE L RE +L YL + G+ + + + Sbjct: 129 LKAPAEEENNTDIQIGDLTIHPEAYTVTKRGENINLTHREFELLHYLAQHIGQVINREHL 188 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++G +D + V+ + +LR+K+ + + ++R +GY + Sbjct: 189 LQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPQWLITRRGVGYYL 235 >gi|189423658|ref|YP_001950835.1| two component transcriptional regulator, winged helix family [Geobacter lovleyi SZ] gi|189419917|gb|ACD94315.1| two component transcriptional regulator, winged helix family [Geobacter lovleyi SZ] Length = 226 Score = 151 bits (382), Expect = 6e-35, Method: Composition-based stats. Identities = 37/225 (16%), Positives = 87/225 (38%), Gaps = 8/225 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61 ++++D + + +G + D+ ++ L G +V Sbjct: 5 LIVEDERDLAELLAYNLEKEGYQALVTGTGVEGLETARRELPDLILLDLMLPGMMGTEVC 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYR 117 R +P++ ++ + F+ G DD + KP RE++ R+ + Sbjct: 65 SALRHSDKTRGIPVLMLTARGDEIDRVVGFEMGADDYIVKPFSMRELMLRIRAILRRSSQ 124 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + G I + V G L E ++L YL + G+ + + + + Sbjct: 125 EPDTTERQITMGTIVIDCASHRVTVAGSEIELTSTEYKLLLYLAEHGGRVMKRELLLQDV 184 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +G ++ + V++H+++LR KL + + + + R GY ++ Sbjct: 185 WG-YNFVGDTRTVDTHVTRLRNKLGDAG--EMIKTVRGFGYKLEE 226 >gi|158320425|ref|YP_001512932.1| two component transcriptional regulator [Alkaliphilus oremlandii OhILAs] gi|158140624|gb|ABW18936.1| two component transcriptional regulator, winged helix family [Alkaliphilus oremlandii OhILAs] Length = 237 Score = 151 bits (382), Expect = 6e-35, Method: Composition-based stats. Identities = 37/231 (16%), Positives = 90/231 (38%), Gaps = 15/231 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + +G + + + + + + D+ ++ L G + Sbjct: 9 ILVVDDEEHILELIRFNLEKEGYDVLLCENGDECIPMIQNNKVDLVVLDLML--PGMDGI 66 Query: 62 ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------IL 109 ++ + + + P+I ++ + + G DD + KP RE Sbjct: 67 QICKKLNRMDEYENLPIIMLTAKSEETDRVLGLELGADDYITKPFSVRELIARIRAVLRR 126 Query: 110 ARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 + R + + + + + G L +E +L+ L NRGK ++ Sbjct: 127 SESKQDSSRYENKEKSIVVKDLIIDVEEHTVSIDGVYVELTLKEFELLKMLSENRGKVLS 186 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + I+G ++ E V+ HI LR+K+ + + +++ R +GY + Sbjct: 187 RNLLLDEIWG-YEYFGETRTVDVHIRHLRRKIGDDKSNEYIETIRGIGYKM 236 >gi|289168019|ref|YP_003446288.1| response regulator [Streptococcus mitis B6] gi|288907586|emb|CBJ22423.1| response regulator [Streptococcus mitis B6] Length = 235 Score = 151 bits (382), Expect = 6e-35, Method: Composition-based stats. Identities = 47/234 (20%), Positives = 96/234 (41%), Gaps = 15/234 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + + + + D+ ++ L L Sbjct: 4 ILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILDLML--PEIDGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-------- 113 E+ + IR S VP+I +S + + + G DD V KP +RE+ ARV Sbjct: 62 EVAKTIRKTSSVPIIMLSAKDTEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTDL 121 Query: 114 ---AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + + G + + D + GE L RE +L +L ++ G+ + + Sbjct: 122 VSVDNQESDEKKTQPLQFGDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHIGQVITR 181 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223 + ++G +D + V+ I +LR+K+ + + + ++R +GY + N Sbjct: 182 EHLLETVWG-YDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 234 >gi|255327015|ref|ZP_05368091.1| two component transcriptional regulator, winged helix family [Rothia mucilaginosa ATCC 25296] gi|255296232|gb|EET75573.1| two component transcriptional regulator, winged helix family [Rothia mucilaginosa ATCC 25296] Length = 233 Score = 151 bits (382), Expect = 6e-35, Method: Composition-based stats. Identities = 46/219 (21%), Positives = 96/219 (43%), Gaps = 4/219 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + +G + + + D+ ++ L+ G + Sbjct: 9 ILVVDDDDALAEMIGLVLAQEGFNAVFCENGSRAFETFMRSTPDLVLLD--LMLPGMNGI 66 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IR S VP+I ++ + + ++G DD + KP H E+LAR+ R + Sbjct: 67 EVCQQIRRSSNVPIIMLTAKSDTEDVVKGLEAGADDYIAKPFKHAELLARIRTRLRPRES 126 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 G I + DGR + P+ E +L L+ + G+ +++ ++ ++G Sbjct: 127 RQLVVSIGDIVMDMDGRTVKYHSTEVPMTPLEFDLLAALVRHPGQALSRQELLDMVWGYT 186 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D V +++V H+ +LR K + + R +GY I Sbjct: 187 D--VSDSLVNVHVQRLRAKFDELGADRFIQTVRGVGYKI 223 >gi|84498188|ref|ZP_00996985.1| putative two-component system response regulator [Janibacter sp. HTCC2649] gi|84381688|gb|EAP97571.1| putative two-component system response regulator [Janibacter sp. HTCC2649] Length = 227 Score = 151 bits (382), Expect = 6e-35, Method: Composition-based stats. Identities = 51/219 (23%), Positives = 93/219 (42%), Gaps = 5/219 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + + ++G+ ++ R DV ++ L G LE Sbjct: 8 LVVDDDLALAEMLGIVLRNEGLEVDHVADGSGALAAFRETRPDVVLLDVML--PGIDGLE 65 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLKV 121 + R IRA S VP++ ++ + +SG DD V KP +E++ARV A R V Sbjct: 66 VCRRIRAESGVPIVMLTARTDTIDVVVGLESGADDYVVKPFKPQELIARVRARLRRGDDV 125 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 R G + + G + +GE L E +L L + + + ++G + Sbjct: 126 EPERLTIGDLVIDVAGHSVKREGESLSLTPLEFDLLVALARKPWQVFTREVLLEQVWG-Y 184 Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219 A + +V H+ +LR K+ + V + R +GY Sbjct: 185 RHAGDTRLVNVHVQRLRSKIEKDPERPEIVVTVRGVGYR 223 >gi|291538269|emb|CBL11380.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Roseburia intestinalis XB6B4] Length = 230 Score = 151 bits (382), Expect = 6e-35, Method: Composition-based stats. Identities = 49/228 (21%), Positives = 96/228 (42%), Gaps = 10/228 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD L+ G DG+ ++ E + + D+ ++ L E Sbjct: 6 LVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEALKMATENAYDMVLLDIML--PKMDGFE 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + IR S +P++ ++ + + G DD + KP + E+ AR+ AI RR S Sbjct: 64 VCQHIREFSNMPIVMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRTAAS 123 Query: 123 NNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + E + + R + G+ L +E +LE L+ N K + + + Sbjct: 124 QPKKEDSKVIEAGDLKLDCESRRLFILGKEVNLTAKEFDLLELLVNNPNKVYGRENLLNL 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223 ++G ++ + V+ H+ +LR+K+ N V K +GY N Sbjct: 184 VWG-YEYPGDVRTVDVHVRRLREKIESNPSEPKYVHIKWGVGYYYSQN 230 >gi|283457730|ref|YP_003362317.1| response regulator [Rothia mucilaginosa DY-18] gi|283133732|dbj|BAI64497.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Rothia mucilaginosa DY-18] Length = 233 Score = 151 bits (382), Expect = 6e-35, Method: Composition-based stats. Identities = 46/219 (21%), Positives = 96/219 (43%), Gaps = 4/219 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + +G + + + D+ ++ L+ G + Sbjct: 9 ILVVDDDDALAEMIGLVLAQEGFNAVFCENGARAFETFMRSTPDLVLLD--LMLPGMNGI 66 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IR S VP+I ++ + + ++G DD + KP H E+LAR+ R + Sbjct: 67 EVCQQIRRSSNVPIIMLTAKSDTEDVVKGLEAGADDYIAKPFKHAELLARIRTRLRPRES 126 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 G I + DGR + P+ E +L L+ + G+ +++ ++ ++G Sbjct: 127 RQLVVSIGDIVMDMDGRTVKYHSTEVPMTPLEFDLLAALVRHPGQALSRQELLDMVWGYT 186 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D V +++V H+ +LR K + + R +GY I Sbjct: 187 D--VSDSLVNVHVQRLRAKFDELGADRFIQTVRGVGYKI 223 >gi|227505097|ref|ZP_03935146.1| response regulator [Corynebacterium striatum ATCC 6940] gi|227198300|gb|EEI78348.1| response regulator [Corynebacterium striatum ATCC 6940] Length = 232 Score = 151 bits (382), Expect = 6e-35, Method: Composition-based stats. Identities = 49/231 (21%), Positives = 95/231 (41%), Gaps = 14/231 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + D L +G + + ++ D+ ++ L G Sbjct: 4 ILIVEDEESLADPLAFLLRKEGFDVILASDGPTALEQFANNTVDIVLLDLML--PGMSGT 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILAR 111 ++ + +RA S VP+I ++ S + + G DD V KP R Sbjct: 62 DVCKQLRATSSVPVIMVTSRDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLRRGHD 121 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 V+A + + E G +R+ + V GE +P +E +LEYL+ N G+ + + Sbjct: 122 VSAESQEEGLEEQILEGGRVRMDVERHIVMVDGEEVSMPLKEFDLLEYLLRNAGRVLTRG 181 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 Q+ I+G D + ++ H+ +LR K+ + + R LGY + Sbjct: 182 QLIDRIWGA-DYVGDTKTLDVHVKRLRSKIEAEPSRPQHLVTVRGLGYKFE 231 >gi|17231314|ref|NP_487862.1| two-component response regulator [Nostoc sp. PCC 7120] gi|17132956|dbj|BAB75521.1| two-component response regulator [Nostoc sp. PCC 7120] Length = 242 Score = 151 bits (382), Expect = 6e-35, Method: Composition-based stats. Identities = 46/228 (20%), Positives = 90/228 (39%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++ G + E + D+ ++ Sbjct: 8 ILVVDDEASIRRILETRLSMIGYDVVTAGDGEEALDTFRKSDPDLVVLDVM--MPKLDGY 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAA 114 + + +R S VP+I ++ + + + G DD V KP +E+ RV Sbjct: 66 GVCQELRKESDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDK 125 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 S+ G I++ ++ R E L E +LE L++ G+ ++++I Sbjct: 126 TGASGIPSSGVIHVGNIKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEAFSRSEIL 185 Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 ++G + V+ VV+ HIS+LR KL + + + + R GY Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLF 233 >gi|331694656|ref|YP_004330895.1| winged helix family two component transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326949345|gb|AEA23042.1| two component transcriptional regulator, winged helix family [Pseudonocardia dioxanivorans CB1190] Length = 233 Score = 151 bits (382), Expect = 6e-35, Method: Composition-based stats. Identities = 50/229 (21%), Positives = 93/229 (40%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V++ +G ++E + ++R D ++ L Sbjct: 3 ILVVDDDRAVRESLRRSLAFNGYTVELAGDGQAALDALQASRPDAMVLDVM--MPRLDGL 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +RA P++ ++ ++ + D+G DD + KP E+LAR+ A+ RR Sbjct: 61 EVCRRMRAAGDELPILVLTARDAVSDRVAGLDAGADDYLPKPFALEELLARLRALLRRRT 120 Query: 121 VSNNRAETGPIRV---------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 A D RD L R E +LE L+A+ + + + Sbjct: 121 PDEIAAAAAGASKPLEFADLSLDPDTRDVRRGDRPISLTRTEFSLLELLLAHPRRVLTRA 180 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 QI ++G +D N +E +I LR+K + + R +GY + Sbjct: 181 QILEQVWG-YDFPTTGNALEVYIGYLRRKTEAGGEPRLIHTVRGVGYVL 228 >gi|229826994|ref|ZP_04453063.1| hypothetical protein GCWU000182_02378 [Abiotrophia defectiva ATCC 49176] gi|229788612|gb|EEP24726.1| hypothetical protein GCWU000182_02378 [Abiotrophia defectiva ATCC 49176] Length = 245 Score = 151 bits (382), Expect = 6e-35, Method: Composition-based stats. Identities = 35/238 (14%), Positives = 86/238 (36%), Gaps = 22/238 (9%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + + + L + D+ ++ L G+ Sbjct: 7 ILIVDDDEDISELISLYLVKECFDTKRAEDGDVAIRLFQEYQPDLILLDIML--PGKDGY 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-------------- 107 ++ R IR S+VP+I +S + + + G DD + KP +E Sbjct: 65 DVCREIRKTSKVPIIMLSAKGEIFDKVLGLELGADDYMIKPFDSKELVARVKAVLRRFSS 124 Query: 108 ----ILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMAN 163 + + NR + + + +P +E + +L ++ Sbjct: 125 DEGVDKSAENTTIVEGTSNINRVIYADLEINLTNYSVTYNNKRVDMPPKELELFYFLASH 184 Query: 164 RGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + Q+ I+G ++ + V+ H+ +LR+K+ + + + +GY + Sbjct: 185 PNQVFTREQLLDRIWG-YEYIGDTRTVDVHVKRLRQKINDHAEWRL-STVWGVGYKFE 240 >gi|187779416|ref|ZP_02995889.1| hypothetical protein CLOSPO_03012 [Clostridium sporogenes ATCC 15579] gi|187773041|gb|EDU36843.1| hypothetical protein CLOSPO_03012 [Clostridium sporogenes ATCC 15579] Length = 221 Score = 151 bits (382), Expect = 6e-35, Method: Composition-based stats. Identities = 48/224 (21%), Positives = 96/224 (42%), Gaps = 10/224 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + + G +E + D+ ++ L Sbjct: 5 ILVVEDDFDIHTIISEVLKESGYLVEVATDGLIAVEMFREGNFDLIILDVML--PKIDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 + IIR S VP+I ++ + + F+ VDD + KP ++ RV Sbjct: 63 VVCEIIRKESSVPIIMLTALGEEEDEMKGFELKVDDYITKPFSINLLIKRVEAVLRRANG 122 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 L+ +N+ I ++ V G+ L +E +ILE L++N G+ ++ + + I+ Sbjct: 123 LEENNSTLTFEEITIYPSNYKTLVNGKEIELTYKEFQILEILISNVGRVFSRESLLNQIW 182 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 G +D + V+++HI LR+KL D + + R +GY I+ Sbjct: 183 G-YDYFGDTRVIDTHIKNLRQKL----NIDYIKTIRGVGYKIEK 221 >gi|121636407|ref|YP_976630.1| two component sensory transduction protein RegX3 [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|2190436|emb|CAA73956.1| RegX3 [Mycobacterium bovis BCG] gi|121492054|emb|CAL70517.1| Two component sensory transduction protein regX3 (probably luxR-family) [Mycobacterium bovis BCG str. Pasteur 1173P2] Length = 227 Score = 151 bits (382), Expect = 6e-35, Method: Composition-based stats. Identities = 54/225 (24%), Positives = 101/225 (44%), Gaps = 9/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + D L +G A D+ ++ L G + Sbjct: 5 LIVEDEESLADPLTFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLML--PGMSGTD 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + +RA S VP+I ++ S + + G DD V KP RE++AR+ A+ RR Sbjct: 63 VCKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDD 122 Query: 123 NNRAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 ++ GP+R+ + V G+ LP +E +LEYLM N G+ + + Q+ + Sbjct: 123 DSEMSDGVLESGPVRMDVERHVVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLIDRV 182 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 +G D + ++ H+ +LR K+ + + + R LGY ++ Sbjct: 183 WGA-DYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVRGLGYKLE 226 >gi|167037240|ref|YP_001664818.1| two component transcriptional regulator [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256751995|ref|ZP_05492864.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus CCSD1] gi|320115659|ref|YP_004185818.1| response regulator receiver [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166856074|gb|ABY94482.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256749105|gb|EEU62140.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus CCSD1] gi|319928750|gb|ADV79435.1| response regulator receiver [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 234 Score = 151 bits (382), Expect = 6e-35, Method: Composition-based stats. Identities = 40/225 (17%), Positives = 91/225 (40%), Gaps = 7/225 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVL 61 ++I+D + + G + + + + D+ ++ L G ++ Sbjct: 6 LVIEDEIHILELLRYNLEAAGYKVITSENGKEGLDKAFEGKPDLVILDLMLPDVDGLEIC 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117 ++ + +P+I ++ + + G DD + KP R I A + + Sbjct: 66 KILKKNDETKNIPIIMLTAKSEEFDKVLGLELGADDYITKPFSVRELLARIKAVLRRTQQ 125 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + G I + + +G+V L +E +L+ L N GK + + + + Sbjct: 126 PEEEKEEIIKFGDIVIDTGKHLVYKKGKVLELTLKEFELLKLLSQNMGKVLTRDYLLDKV 185 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 +G ++ A E V+ HI LRKK+ + +++ R +GY ++ Sbjct: 186 WG-YEYAGETRTVDVHIRHLRKKIEDDDKSPVYIETVRGIGYKLN 229 >gi|296169791|ref|ZP_06851406.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295895585|gb|EFG75284.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 229 Score = 151 bits (382), Expect = 6e-35, Method: Composition-based stats. Identities = 43/225 (19%), Positives = 88/225 (39%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V++ +G S+E + + +S R D ++ L Sbjct: 3 ILVVDDDRAVRESLRRSLSFNGYSVELAHDGLEALEMIASDRPDALVLDVM--MPRLDGL 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-----HREILARVAAI 115 E+ R +R+ P++ ++ S+ + D+G DD + KP R Sbjct: 61 EVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTK 120 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + + + R+ L R E +LE L+AN + + +++I Sbjct: 121 PDDEDAESVAMKFSDLTLDPVTREVTRGQRQISLTRTEFALLEMLIANPRRVLTRSRILE 180 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G FD N +E ++ LR+K + + R +GY + Sbjct: 181 EVWG-FDFPTSGNALEVYVGYLRRKTEADGEPRLIHTVRGVGYVL 224 >gi|229158472|ref|ZP_04286533.1| Two component transcriptional regulator, winged helix [Bacillus cereus ATCC 4342] gi|228624991|gb|EEK81757.1| Two component transcriptional regulator, winged helix [Bacillus cereus ATCC 4342] Length = 232 Score = 151 bits (382), Expect = 6e-35, Method: Composition-based stats. Identities = 53/229 (23%), Positives = 84/229 (36%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD A + D +G + E + + D+ ++ Sbjct: 6 ILIADDEAEIADLIEIHLEKEGYHVLKAADGEEAIHIIETQPIDLVVLDIM--MPKMDGY 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IRA +P+I +S S + G DD + KP E++ARV A RR Sbjct: 64 EVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 123 Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 N + + R V GE L +E IL L ++ K I Sbjct: 124 LNQPKVVDNKSALEVGGVVIDPERRTVNVYGEQVELTPKEFDILYLLASHPKKVYNVENI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221 F ++ N V HI LRKKL +K + + +GY+ + Sbjct: 184 FQQVWADDYYEGG-NTVMVHIRTLRKKLGEDKRKDKLIKTVWGVGYTFN 231 >gi|194014661|ref|ZP_03053278.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Bacillus pumilus ATCC 7061] gi|194013687|gb|EDW23252.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Bacillus pumilus ATCC 7061] Length = 235 Score = 151 bits (382), Expect = 6e-35, Method: Composition-based stats. Identities = 43/225 (19%), Positives = 93/225 (41%), Gaps = 10/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD + + + +G+ + ++ + + D+ ++ L + Sbjct: 9 LIIDDEKEILELIHTVLTREGIDRVITASTARDGLSQFNQEQPDLVILDIML--PDGEGY 66 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-----Y 116 ++ + IR S VP+I +S + G DD + KP +E+ RV A Y Sbjct: 67 DICKQIRDVSHVPIIFLSAKGEESDKIVGLAIGGDDYITKPFSPKEVAYRVKAQLRRSSY 126 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + + GP + + G L +E ++ Y + + + ++K ++ Sbjct: 127 LQPSQAEPVIKKGPFELNEQQAELTKNGAAIELTPKELMLMTYFLQHPNRVISKETLYQT 186 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 ++G D +N V HI +LR+K+ N + + + + LGY Sbjct: 187 VWGE-DFFGSDNTVMVHIRRLREKIENSPSTPEFLVTVKGLGYKF 230 >gi|317496245|ref|ZP_07954605.1| response regulator receiver domain-containing protein [Gemella moribillum M424] gi|316913820|gb|EFV35306.1| response regulator receiver domain-containing protein [Gemella moribillum M424] Length = 233 Score = 151 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 49/226 (21%), Positives = 96/226 (42%), Gaps = 12/226 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +G + N E L S D+ ++ L + + Sbjct: 6 ILVVDDEEPIAKILDFNLKKEGYDVIIANDGERAVELAFSENPDLILLDLML--PKKDGM 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +RA +P+I ++ S + + G DD V KP RE++ARV RR+ Sbjct: 64 EVCREVRAKKNIPIIMLTAKNSEIDKVLGLEFGADDYVTKPFSTRELMARVKVNLRRVLK 123 Query: 122 SNNRAE--------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 E I ++ D + G+ L RRE + YL + G+ + + + Sbjct: 124 QQEDVEEEKTSELAIKDIVIYPDAYVIKKNGKEIDLTRREFDLFYYLAQHPGQVLTRENL 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218 ++G +D + V+ + +LR+K+ + + + ++R +GY Sbjct: 184 LQTVWG-YDYFGDVRTVDVTVRRLREKVETDSSQPEYIMTRRGVGY 228 >gi|256786375|ref|ZP_05524806.1| two-component systen response regulator [Streptomyces lividans TK24] gi|289770266|ref|ZP_06529644.1| two-component system response regulator [Streptomyces lividans TK24] gi|289700465|gb|EFD67894.1| two-component system response regulator [Streptomyces lividans TK24] Length = 248 Score = 151 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 48/229 (20%), Positives = 91/229 (39%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V++ +G E ++ R D+ ++ L Sbjct: 17 ILIVDDEPAVREALQRSLAFEGYDTEVAVDGADALEKATAYRPDLVVLDI--QMPRMDGL 74 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 R IR A P++ ++ ++ + D+G DD + KP E+ AR+ A+ RR Sbjct: 75 TAARRIRGAGDLTPIVMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSS 134 Query: 121 V---------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 ++ + + R+ G L R E +LE MA+ + + + Sbjct: 135 YAAAVEATAEDDDTLTFADLTMDLATREVSRAGRPVELTRTEFTLLEMFMAHPRQVLTRE 194 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 QI A++G FD N ++ ++ LR+K V + R +GY + Sbjct: 195 QILKAVWG-FDFEPSSNSLDVYVMYLRRKTEAGGEPRLVHTVRGVGYVL 242 >gi|326202201|ref|ZP_08192071.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] gi|325987996|gb|EGD48822.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] Length = 217 Score = 151 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 49/221 (22%), Positives = 91/221 (41%), Gaps = 9/221 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G D+ ++ L G Sbjct: 4 ILIVEDEVAINELVKRNLQLVGHQCNSVFDGNAAVQEIQCRSYDLIILDIML--PGLDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ I ++ P I +S S+ + F G DD + KP E+LARV A+ RR + Sbjct: 62 EV---IEQANKTPTIFLSAKNSMPDRIKGFSMGADDYLTKPFEMLELLARVEAVLRRTQR 118 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + E G +++ G+ +E +LE L+ NR +++ ++ ++G + Sbjct: 119 TASCFEAGNVKIDFSSHQVFHNGQSVECTPKEYELLEVLVNNRNIALSRERLLELVWG-Y 177 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 D + V+ HI KLRKKL D + + LGY ++ Sbjct: 178 DFEGDTRTVDVHIQKLRKKLEW---EDRIKTVYKLGYRLEV 215 >gi|295400059|ref|ZP_06810039.1| two component transcriptional regulator, winged helix family [Geobacillus thermoglucosidasius C56-YS93] gi|312110691|ref|YP_003989007.1| transcriptional regulator [Geobacillus sp. Y4.1MC1] gi|294977838|gb|EFG53436.1| two component transcriptional regulator, winged helix family [Geobacillus thermoglucosidasius C56-YS93] gi|311215792|gb|ADP74396.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y4.1MC1] Length = 225 Score = 151 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 46/221 (20%), Positives = 92/221 (41%), Gaps = 6/221 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD ++ + G S + + ++ + D I+ Sbjct: 9 LIVDDEEDMRFLVKMYLENAGFSCLEAEDGDKALDVLANVKVDAVLIDIM--MPKMDGFS 66 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L IR S VP++ ++ + G DD + KP E++AR+ A+ RR + Sbjct: 67 LCERIRWQSDVPILFLTARGEEWDKVKGLKLGGDDYIVKPFSPGELIARIEAVMRRAYHA 126 Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 N + + GR V GE L +E +L +L +RG+ ++ ++ + ++G + Sbjct: 127 GNHDLSFGPLTIDERGRKVTVDGEPLILTLKEFDLLLFLAKHRGQVFSREELLAKVWG-Y 185 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 D V++HI LR KL+ + + + +GY + Sbjct: 186 DYTGNVRTVDTHIKTLRMKLKQAS--EFIHTVWGIGYKFEV 224 >gi|271962512|ref|YP_003336708.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270505687|gb|ACZ83965.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 229 Score = 151 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 52/224 (23%), Positives = 96/224 (42%), Gaps = 8/224 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D D + +G + + D+ ++ L G E Sbjct: 5 LVVEDEESFSDALSYMLRKEGFEVAVAATGPEALDTFDRNGADLVLLDLML--PGLPGTE 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +R S VP+I ++ S + + G DD V KP RE++AR+ A+ RR Sbjct: 63 VCRSLRQRSNVPVIMLTAKDSEIDKVVGLELGADDYVTKPFSSRELVARIRAVLRRQGDV 122 Query: 123 NNRAETG----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 P+R+ D V+G+ LP +E +LE L+ N G+ + + Q+ ++ Sbjct: 123 EELESAVLAAGPVRMDVDRHIVAVRGQQVQLPLKEFELLEVLLRNAGRVLTRGQLIDRVW 182 Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 G D + ++ H+ +LR K+ + + + R LGY D Sbjct: 183 GA-DYVGDTKTLDVHVKRLRAKVESDPSNPRCILTVRGLGYKFD 225 >gi|219849580|ref|YP_002464013.1| winged helix family two component transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219543839|gb|ACL25577.1| two component transcriptional regulator, winged helix family [Chloroflexus aggregans DSM 9485] Length = 236 Score = 151 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 40/225 (17%), Positives = 76/225 (33%), Gaps = 7/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 +++DD + G + L + ++ L G V Sbjct: 5 ILVVDDEPGIVKIARDYLERAGFHVISAGDGPSALRLARQEHPSLIVLDLMLPGMDGLDV 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117 R + VP+I ++ L + G DD + KP RE++ARV Sbjct: 65 TRALRQDPLTAGVPIIMLTARVEETDRLIGLELGADDYITKPFSPRELVARVRAVLRRIE 124 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + G + + + R E+ L E +L L + G+ + Q+ I Sbjct: 125 GHLQPTKVIQAGRLTIDLERRIVRRDNEIIELTATEFELLTILASAPGRPFTRAQLLDRI 184 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG--FDPVDSKRFLGYSI 220 Y + + +++HI LR+K+ + + +GY Sbjct: 185 YNT-NYIGFDRTIDAHIKNLRRKIEPDPNGPPRLILTVYGVGYKF 228 >gi|206978308|ref|ZP_03239184.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217957829|ref|YP_002336373.1| DNA-binding response regulator [Bacillus cereus AH187] gi|225862313|ref|YP_002747691.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|229137101|ref|ZP_04265723.1| Two-component response regulator [Bacillus cereus BDRD-ST26] gi|206743476|gb|EDZ54907.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217068004|gb|ACJ82254.1| DNA-binding response regulator [Bacillus cereus AH187] gi|225789374|gb|ACO29591.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|228646361|gb|EEL02573.1| Two-component response regulator [Bacillus cereus BDRD-ST26] Length = 233 Score = 151 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 46/230 (20%), Positives = 89/230 (38%), Gaps = 11/230 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ ++G + E L + ++ + Sbjct: 6 ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIM--MPKVDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + +R ++P+I +S + +G DD V KP + E++AR+ + RR Sbjct: 64 HMCMKVREEKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMK 123 Query: 122 SNNRAETG-------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N A +++ V+GE L RE ILE L N G + QI+ Sbjct: 124 MNGFAIQNEDELEIGEMKINISTHKVIVEGEEVKLTPREFSILELLARNPGMVFSAEQIY 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223 ++ +N V HI K+R+K+ + + +GY I+ + Sbjct: 184 EKVWNERSFQ-SDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGYKIEKD 232 >gi|84498508|ref|ZP_00997278.1| response regulator of two-component system [Janibacter sp. HTCC2649] gi|84381251|gb|EAP97135.1| response regulator of two-component system [Janibacter sp. HTCC2649] Length = 237 Score = 151 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 44/223 (19%), Positives = 87/223 (39%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D +++ G + + L D+ ++ L Sbjct: 12 LLVVEDEPNIRELLATSLRFAGFEVVTAATGGEAVKLADQHHPDLCVLDVML--PDMDGF 69 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPI---HHREILARVAAIYR 117 + R +R + P++ ++ S+ + G DD V KP + V R Sbjct: 70 AVTRKLRESGRRLPIVFVTARDSVDDKITGLTVGGDDYVTKPFSLEEVVARIRAVLRRTR 129 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 N+ + + D + G V E ++L YLM N + ++K QI + Sbjct: 130 GDIDGNSALRFEDLELDEDSHEVRRAGRVIETSPTEFKLLRYLMLNPNRVLSKAQILDHV 189 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + +D E +VES+IS LR+K+ + + +KR +GY + Sbjct: 190 W-EYDFRGESGIVESYISYLRRKIDTEGLPPLIHTKRGVGYVL 231 >gi|229826144|ref|ZP_04452213.1| hypothetical protein GCWU000182_01516 [Abiotrophia defectiva ATCC 49176] gi|229789014|gb|EEP25128.1| hypothetical protein GCWU000182_01516 [Abiotrophia defectiva ATCC 49176] Length = 257 Score = 151 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 51/233 (21%), Positives = 89/233 (38%), Gaps = 14/233 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + N + S D+S ++ G L Sbjct: 27 ILVVDDDKEIADLVEIHLVSEGYEVRKANDAVTGLAILKSEE-DISLAILDIMMPGMDGL 85 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + IR S +P+I +S + + +G DD V KP + E+ ARV A RR Sbjct: 86 SMVKKIRETSHIPVIMLSAKSTDLDKIVGLGNGADDYVTKPFNPLELTARVKANLRRFTE 145 Query: 122 SNNRAETGPIRVFSD-----------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 N+ + G R+ + L E IL L +N G+ + Sbjct: 146 FNSGQKAGVDSGDEIIEAGPLYINKSTREVRTYDKEAKLTPIEYDILCLLASNPGRVFST 205 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 IF+ ++ N V HI +LR+K+ + + + +GY I+ Sbjct: 206 DDIFTRVWNEKAFEGN-NTVMVHIRRLREKIEMDARNAKIIKTVWGVGYKIEK 257 >gi|328544892|ref|YP_004305001.1| phosphate regulon transcriptional regulatory protein [polymorphum gilvum SL003B-26A1] gi|326414634|gb|ADZ71697.1| Phosphate regulon transcriptional regulatory protein [Polymorphum gilvum SL003B-26A1] Length = 231 Score = 151 bits (381), Expect = 7e-35, Method: Composition-based stats. Identities = 52/224 (23%), Positives = 99/224 (44%), Gaps = 8/224 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + +G ++E + E ++ D+ ++ L G +E Sbjct: 5 LIVEDEEPLSLLLRYNLEAEGYAVEACERGDEAEIRLRESQPDLLLLDWML--PGLSGIE 62 Query: 63 LPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L R +RA ++ P+I ++ + +G DD V KP E++ARV AI RR Sbjct: 63 LCRRLRARAETERLPVIMLTARGEEAERIRGLATGADDYVVKPFSVPELMARVRAILRRA 122 Query: 120 KVSNNRAETGPIRV--FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + + G+ L E R+LE+LM + G+ ++ Q+ + Sbjct: 123 RPEVVSTMLRSGDIELDRETHRVRRGGKEIHLGPTEFRLLEFLMTSPGRVFSREQLLDGV 182 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +G D V+E V+ H+ +LRK + DP+ + R GY+ + Sbjct: 183 WG-HDVYVDERTVDVHVGRLRKAINRGKVKDPIRTVRGAGYAFN 225 >gi|309811181|ref|ZP_07704976.1| DNA-binding response regulator MtrA [Dermacoccus sp. Ellin185] gi|308434867|gb|EFP58704.1| DNA-binding response regulator MtrA [Dermacoccus sp. Ellin185] Length = 228 Score = 151 bits (381), Expect = 7e-35, Method: Composition-based stats. Identities = 46/218 (21%), Positives = 88/218 (40%), Gaps = 4/218 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + + +G + A+ D+ ++ L G+ +E Sbjct: 6 LIVDDDPALAEMLGIVLRGEGYHVTHCGDGTSALATFRDAKPDLVLLDVML--PGKNGVE 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IRA S VP++ ++ + ++G DD VNKP E++ARV A RR Sbjct: 64 VCRAIRAESDVPIVMLTARTDTLDVVAGLEAGADDYVNKPFKPAELVARVRARLRRGDAE 123 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 G + + G L E +L L + ++ + ++G + Sbjct: 124 PETVTIGDLTIDLAAHSVTRDGTPISLTPLEFDLLLALARKPWQVFSREVLLEQVWG-YR 182 Query: 183 EAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219 A + +V H+ +LR K+ + V + R +GY Sbjct: 183 HAADTRLVNVHVQRLRAKVEKDPEKPEIVVTVRGVGYK 220 >gi|289178119|gb|ADC85365.1| YycF [Bifidobacterium animalis subsp. lactis BB-12] Length = 255 Score = 151 bits (381), Expect = 7e-35, Method: Composition-based stats. Identities = 50/229 (21%), Positives = 95/229 (41%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D D + +G G + E L D+ ++ L G Sbjct: 24 ILVVEDEPSYLDPLLYQLTREGYEAHGAATGEEAWELYEEMEFDLVLLDLML--PGISGT 81 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-------- 113 L R + +VP+I ++ + + + G DD V KP RE+LAR+ Sbjct: 82 TLCRRMHELRRVPIIMVTAKSTENDVIVGLEIGADDYVTKPYSFRELLARIHAVLRRSLE 141 Query: 114 -AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 ++ GPI + + + GE+ P +E +LEYLM N+G+ + + Q Sbjct: 142 PRASGTPGGNDETLTCGPIEMSVASHEVRIHGELTQFPLKEFEVLEYLMRNKGRVLTRQQ 201 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + ++G D + ++ H+ ++R K+ + + + R LGY I Sbjct: 202 LIGRVWG-SDYVGDTKTLDVHVKRIRAKIEADPSNPALLTTVRGLGYRI 249 >gi|251781983|ref|YP_002996285.1| two-component response regulator [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390612|dbj|BAH81071.1| two-component response regulator [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 236 Score = 151 bits (381), Expect = 7e-35, Method: Composition-based stats. Identities = 49/232 (21%), Positives = 97/232 (41%), Gaps = 16/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + + + D+ ++ L L Sbjct: 4 ILIVDDEKPISDIIKFNLTKEGYDIVTAFDGREAVTIFEEEKPDLIILDLML--PELDGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IR S VP+I +S S + + G DD V KP +RE+LARV A RR + Sbjct: 62 EVAKEIRKTSHVPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTET 121 Query: 122 SN------------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 G +++ D + G+ L RE +L +L + G+ + Sbjct: 122 IETAVAEENASSGSQELTIGNLQILPDAFVAKKHGKEVELTHREFELLHHLANHMGQVMT 181 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + + ++G +D + V+ + +LR+K+ + + + ++R +GY + Sbjct: 182 REHLLETVWG-YDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYM 232 >gi|16331756|ref|NP_442484.1| OmpR subfamily [Synechocystis sp. PCC 6803] gi|1001717|dbj|BAA10554.1| OmpR subfamily [Synechocystis sp. PCC 6803] Length = 262 Score = 151 bits (381), Expect = 7e-35, Method: Composition-based stats. Identities = 47/230 (20%), Positives = 94/230 (40%), Gaps = 12/230 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARED-----VSAIEAFLIGK 56 ++++D +++ + ++G + + L ED V I ++ Sbjct: 33 ILVVEDEVSIRETIVLSLQEEGYEVYAVDDGRDALALLQEFSEDPGQAAVDLIILDIMLP 92 Query: 57 GEKVLELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 L++ R +R P++ +S S + + G DD + KP +E++AR A+ Sbjct: 93 QVNGLDVCRSLRFGGDNTPILIVSAKGSEMEKVTGLEVGADDYITKPFSLKELVARCRAM 152 Query: 116 YRRLKVSNNRAETGPIRVF----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 RR ++ N ++GE L +E R+LE M+ + ++ Sbjct: 153 IRRQGLAGNNIAPFRKFRDLVLYPQECRVLMRGEEVSLAPKEFRLLELFMSYPRRVWSRE 212 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 Q+ I+G+ D + V+ HI LR+KL + + + + R GY Sbjct: 213 QLIEHIWGI-DFMGDSKTVDVHIRWLREKLEQDPSQPEYLVTVRGFGYRF 261 >gi|15839882|ref|NP_334919.1| DNA-binding response regulator RegX3 [Mycobacterium tuberculosis CDC1551] gi|308231563|ref|ZP_07412927.2| two component system sensor protein regX3 [Mycobacterium tuberculosis SUMu001] gi|308370423|ref|ZP_07421449.2| putative response regulator receiver domain protein [Mycobacterium tuberculosis SUMu003] gi|308371683|ref|ZP_07425819.2| putative response regulator receiver domain protein [Mycobacterium tuberculosis SUMu004] gi|308372906|ref|ZP_07430350.2| putative response regulator receiver domain protein [Mycobacterium tuberculosis SUMu005] gi|308374017|ref|ZP_07667694.1| putative response regulator receiver domain protein [Mycobacterium tuberculosis SUMu006] gi|308379790|ref|ZP_07487588.2| two component system sensor protein regX3 [Mycobacterium tuberculosis SUMu011] gi|308395531|ref|ZP_07669341.1| two component system sensor protein regX3 [Mycobacterium tuberculosis SUMu012] gi|13880018|gb|AAK44733.1| DNA-binding response regulator RegX3 [Mycobacterium tuberculosis CDC1551] gi|308216807|gb|EFO76206.1| two component system sensor protein regX3 [Mycobacterium tuberculosis SUMu001] gi|308332020|gb|EFP20871.1| putative response regulator receiver domain protein [Mycobacterium tuberculosis SUMu003] gi|308335807|gb|EFP24658.1| putative response regulator receiver domain protein [Mycobacterium tuberculosis SUMu004] gi|308339412|gb|EFP28263.1| putative response regulator receiver domain protein [Mycobacterium tuberculosis SUMu005] gi|308343288|gb|EFP32139.1| putative response regulator receiver domain protein [Mycobacterium tuberculosis SUMu006] gi|308363617|gb|EFP52468.1| two component system sensor protein regX3 [Mycobacterium tuberculosis SUMu011] gi|308367307|gb|EFP56158.1| two component system sensor protein regX3 [Mycobacterium tuberculosis SUMu012] gi|323721166|gb|EGB30228.1| two component system sensor protein regX3 [Mycobacterium tuberculosis CDC1551A] Length = 230 Score = 151 bits (381), Expect = 7e-35, Method: Composition-based stats. Identities = 54/225 (24%), Positives = 101/225 (44%), Gaps = 9/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + D L +G A D+ ++ L G + Sbjct: 8 LIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLML--PGMSGTD 65 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + +RA S VP+I ++ S + + G DD V KP RE++AR+ A+ RR Sbjct: 66 VCKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDD 125 Query: 123 NNRAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 ++ GP+R+ + V G+ LP +E +LEYLM N G+ + + Q+ + Sbjct: 126 DSEMSDGVLESGPVRMDVERHVVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLIDRV 185 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 +G D + ++ H+ +LR K+ + + + R LGY ++ Sbjct: 186 WGA-DYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVRGLGYKLE 229 >gi|294630116|ref|ZP_06708676.1| DNA-binding response regulator [Streptomyces sp. e14] gi|292833449|gb|EFF91798.1| DNA-binding response regulator [Streptomyces sp. e14] Length = 246 Score = 151 bits (381), Expect = 7e-35, Method: Composition-based stats. Identities = 49/229 (21%), Positives = 90/229 (39%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V++ +G E ++ R D+ ++ L Sbjct: 15 ILIVDDEPAVREALQRSLAFEGYDTEVAVDGADALEKAAAYRPDLVVLDI--QMPRMDGL 72 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 R IR P++ ++ ++ + D+G DD + KP E+ AR+ A+ RR Sbjct: 73 TAARRIRGTGDTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSS 132 Query: 121 VSNNRAETGPI---------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + A R+ R+ G L R E +LE MA+ + + + Sbjct: 133 YAAAVAGAADEGDVLAFGDLRMDLATREVTRGGRPVELTRTEFTLLEMFMAHPRQVLTRE 192 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 QI A++G FD N ++ ++ LR+K V + R +GY + Sbjct: 193 QILKAVWG-FDFEPSSNSLDVYVMYLRRKTEAGGEPRLVHTVRGVGYVL 240 >gi|229135700|ref|ZP_04264477.1| Two component transcriptional regulator, winged helix [Bacillus cereus BDRD-ST196] gi|228647798|gb|EEL03856.1| Two component transcriptional regulator, winged helix [Bacillus cereus BDRD-ST196] Length = 232 Score = 151 bits (381), Expect = 7e-35, Method: Composition-based stats. Identities = 51/229 (22%), Positives = 83/229 (36%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD A + D +G + E + + D+ ++ Sbjct: 6 ILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAMHIIQTQPIDLVVLDIM--MPKMDGY 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR +P+I +S S + G DD + KP E++ARV A RR Sbjct: 64 EVTRQIRGKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 123 Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 N + + R V E L +E IL L ++ K + I Sbjct: 124 LNQPKVAESKSALEIGGVVIDPERRTVNVYDEKIELTPKEFDILYLLASHPKKVYSVENI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221 F ++ N V HI LRKKL +K + + +GY+ + Sbjct: 184 FQQVWAEGYYE-SGNTVMVHIRTLRKKLGEDKRKNKLIKTVWGVGYTFN 231 >gi|225390635|ref|ZP_03760359.1| hypothetical protein CLOSTASPAR_04390 [Clostridium asparagiforme DSM 15981] gi|225043320|gb|EEG53566.1| hypothetical protein CLOSTASPAR_04390 [Clostridium asparagiforme DSM 15981] Length = 235 Score = 151 bits (381), Expect = 7e-35, Method: Composition-based stats. Identities = 41/230 (17%), Positives = 92/230 (40%), Gaps = 13/230 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD L+ G +G+ ++ E L D+ ++ L Sbjct: 4 ILVVDDEKLIVKGIRFSLEQEGMEVDCAYDGEEAIELARKTEYDMVLLDVML--PKHDGY 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH---------REILARV 112 E+ + IR S +P+I ++ + + G DD ++KP + + Sbjct: 62 EVCQAIREFSDMPIIMLTAKGGDMDKILGLEYGADDYISKPFNILEVKARIKAIMRRSGK 121 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 R+ + +++ G +++ ++ R + G L +E +LE L+ N K ++ Sbjct: 122 NRKNRKEEQNSHVIGAGDLKMDTESRRVYISGREINLTAKEFDLLELLVRNPNKVYSREA 181 Query: 173 IFSAIYGLFDEA-VEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + + ++G + V+ H+ +LR+K+ V +K +GY Sbjct: 182 LLTYVWGNRAMDSGDVRTVDVHVRRLREKIEPSPSDPKFVHTKWGVGYYF 231 >gi|47567511|ref|ZP_00238223.1| DNA-binding response regulator [Bacillus cereus G9241] gi|47555913|gb|EAL14252.1| DNA-binding response regulator [Bacillus cereus G9241] Length = 233 Score = 151 bits (381), Expect = 7e-35, Method: Composition-based stats. Identities = 46/230 (20%), Positives = 90/230 (39%), Gaps = 11/230 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ ++G ++ E L + ++ + Sbjct: 6 ILVVDDEKEIRNLITIYLKNEGYTVLQAGDGEEGLRLLEENEVHLVVLDIM--MPKVDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + +R ++P+I +S + +G DD V KP + E++AR+ + RR Sbjct: 64 HMCMKVREEKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMK 123 Query: 122 SNNRAETG-------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N A +++ V+GE L RE ILE L N G + QI+ Sbjct: 124 MNGFAIQNEDELEIGEMKINISTHKVIVEGEEVKLTPREFSILELLARNPGMVFSAEQIY 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223 ++ +N V HI K+R+K+ + + +GY I+ + Sbjct: 184 EKVWNERSFQ-SDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGYKIEKD 232 >gi|332798939|ref|YP_004460438.1| winged helix family two component transcriptional regulator [Tepidanaerobacter sp. Re1] gi|332696674|gb|AEE91131.1| two component transcriptional regulator, winged helix family [Tepidanaerobacter sp. Re1] Length = 239 Score = 151 bits (381), Expect = 7e-35, Method: Composition-based stats. Identities = 37/231 (16%), Positives = 89/231 (38%), Gaps = 15/231 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ G ++ + + + + ++ L L Sbjct: 8 ILVVDDEKNIRELVRFNLESRGYKVKEAMDGKEALSIARTDEPLLIILDLML--PKIDGL 65 Query: 62 ELPRII---RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI-------LAR 111 E+ RI+ + ++P+I ++ + + G DD + KP RE+ + R Sbjct: 66 EVCRILKGDPSTKKIPIIMLTALGDEIDKIVGLELGADDYITKPFSPREMVARVRAVIRR 125 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 V + + ++ E + + + + G L +E +L+ AN ++ Sbjct: 126 VEDRRKPEEPEHSVNEFNDLVIDEQKHEVLLSGSRLDLTLKEYELLKVFAANPFNVFSRE 185 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD--PVDSKRFLGYSI 220 + ++G +D + V+ H+ LR+KL +++ R +GY Sbjct: 186 HLLEKVWG-YDFMGDTRTVDVHVCNLRRKLEEADDKTGYYIETVRGVGYRF 235 >gi|329936252|ref|ZP_08286045.1| two-component systen response regulator [Streptomyces griseoaurantiacus M045] gi|329304362|gb|EGG48242.1| two-component systen response regulator [Streptomyces griseoaurantiacus M045] Length = 244 Score = 151 bits (381), Expect = 7e-35, Method: Composition-based stats. Identities = 49/229 (21%), Positives = 92/229 (40%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V++ +G E ++ R D+ ++ L Sbjct: 13 ILIVDDEPAVREALQRSLAFEGYGTEVAVDGADALEKAAAYRPDLLVLDI--QMPRMDGL 70 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 R IRA P++ ++ ++ + D+G DD + KP E+ AR+ A+ RR Sbjct: 71 TAARRIRAAGDTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSS 130 Query: 121 V---------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 N+ +R+ R+ G L R E +LE +A+ + + + Sbjct: 131 YAAAVAGADEENDTLAFADLRMDLATREVTRGGRAVELTRTEFTLLEMFLAHPRQVLTRE 190 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 QI A++G FD N ++ ++ LR+K V + R +GY + Sbjct: 191 QILKAVWG-FDFEPSSNSLDVYVMYLRRKTEAGGEPRLVHTVRGVGYVL 238 >gi|315158433|gb|EFU02450.1| response regulator receiver domain protein [Enterococcus faecalis TX0312] Length = 234 Score = 151 bits (381), Expect = 7e-35, Method: Composition-based stats. Identities = 48/228 (21%), Positives = 93/228 (40%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + +G + E D+ ++ L L Sbjct: 4 ILVVDDEKPILEIVKYNLVKEGYEVFTAYDGEEALEKVEEVEPDLIILDLML--PKMDGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R +P+I ++ S + + G DD V KP +RE++ARV A RR Sbjct: 62 EVAREVRKTHDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRGAT 121 Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + AE + D +GE L RE +L YL + G+ + + + Sbjct: 122 NAKEAEVTTQSELTIGDLTIHPDAYMVSKRGEKIELTHREFELLYYLAKHIGQVMTREHL 181 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++G +D + V+ + +LR+K+ + + ++R +GY + Sbjct: 182 LQTVWG-YDYFGDVRTVDVTVRRLREKIEDSPSHPTYLVTRRGVGYYL 228 >gi|146292399|ref|YP_001182823.1| two component transcriptional regulator [Shewanella putrefaciens CN-32] gi|145564089|gb|ABP75024.1| two component transcriptional regulator, winged helix family [Shewanella putrefaciens CN-32] Length = 229 Score = 151 bits (381), Expect = 7e-35, Method: Composition-based stats. Identities = 34/224 (15%), Positives = 83/224 (37%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D +++ + G + + L D+ ++ G + Sbjct: 5 ILIVEDELAIREMLTFVMEQHGFTTSAAEDFDSAIALLKEPYPDLILLDWM--FPGGSGI 62 Query: 62 ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIY 116 +L + ++ Q+P+I ++ + + + G DD + KP +E+ + Sbjct: 63 QLAKRLKQDEFTRQIPIIMLTARGEEEDKVKGLEVGADDYITKPFSPKELVARIKAVLRR 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + + V V + E R+L + M + + ++ Q+ Sbjct: 123 SAPTRLEETIDVQGLLLDPVSHRVSVGETVLDMGPTEFRLLHFFMTHPERVYSREQLLDN 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + VE+ V+ HI +LRK + + + R GY Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKAVEESGHDRLIQTVRGAGYRF 225 >gi|39937833|ref|NP_950109.1| winged helix family two component transcriptional regulator [Rhodopseudomonas palustris CGA009] gi|192293618|ref|YP_001994223.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris TIE-1] gi|39651693|emb|CAE30215.1| two-component phosphate transcriptional regulator PhoB [Rhodopseudomonas palustris CGA009] gi|192287367|gb|ACF03748.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris TIE-1] Length = 237 Score = 151 bits (381), Expect = 7e-35, Method: Composition-based stats. Identities = 50/225 (22%), Positives = 93/225 (41%), Gaps = 8/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G +E + + D+ ++ L G + Sbjct: 5 ILVVEDEEALTTLLRYNLESEGYEVETVARGDDADTRMKERIPDLVVLDWML--PGLSGI 62 Query: 62 ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IY 116 EL R +RA + P+I ++ + +G DD + KP E+LARV Sbjct: 63 ELCRRLRARPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLLRR 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + G + + D R G L E R+LE+ + + G+ ++ Q+ Sbjct: 123 AAPERLATVLAYGDLELDRDKRRVARSGRPIDLGPTEYRLLEFFLEHPGRVFSREQLLDG 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G D ++E V+ HI +LRK L DP+ + R GY++D Sbjct: 183 VWGR-DIYIDERTVDVHIGRLRKLLNIGREQDPIRTVRGAGYALD 226 >gi|223986415|ref|ZP_03636420.1| hypothetical protein HOLDEFILI_03732 [Holdemania filiformis DSM 12042] gi|223961611|gb|EEF66118.1| hypothetical protein HOLDEFILI_03732 [Holdemania filiformis DSM 12042] Length = 229 Score = 151 bits (381), Expect = 7e-35, Method: Composition-based stats. Identities = 46/228 (20%), Positives = 85/228 (37%), Gaps = 10/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A + ++G S L + D++ ++ L Sbjct: 5 ILIVDDDAEIAQLVSVYLKNEGFQTTVEYSGTEALKLIRDHKFDLAVLDVML--PDCSGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115 L IR+H P+I ++ + G DD + KP + E+ R Sbjct: 63 HLCEEIRSHYNYPVIMLTAKGEDIDKITGLTIGADDYITKPFNPVEMTARVKAQLRRYMR 122 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 Y K +N + + + + + GE L E IL+ L NRGK ++ +F Sbjct: 123 YNSQKRDDNIIDFQGLILNCSTHECTLYGEKLNLTPTEFSILQMLCENRGKVISSQDLFE 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDW 222 +I+ N V HI ++R+K+ + + +GY I+ Sbjct: 183 SIWKEKYFE-SNNTVMVHIRRIREKMHEQPRNPKFIKTVWGMGYKIEK 229 >gi|161353605|ref|NP_460069.2| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167993660|ref|ZP_02574754.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168264141|ref|ZP_02686114.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|197263478|ref|ZP_03163552.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197241733|gb|EDY24353.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205328288|gb|EDZ15052.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205347397|gb|EDZ34028.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|267992849|gb|ACY87734.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|312912084|dbj|BAJ36058.1| transcriptional regulator YedW [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321223711|gb|EFX48774.1| Putative two-component system response regulator YedW [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323129363|gb|ADX16793.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] Length = 226 Score = 151 bits (381), Expect = 7e-35, Method: Composition-based stats. Identities = 47/219 (21%), Positives = 94/219 (42%), Gaps = 3/219 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D + + G ++ L + ++ L G Sbjct: 3 ILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIML--PGLDGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R +R Q P+I ++ S++ + ++G +D + KP E+LARV A R+ Sbjct: 61 QVLRALRTAHQSPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHVP 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + R + + + + G+ L R+E +L L + G+ V +T I S ++G+ Sbjct: 121 AFTRLTINGLDMDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWGI- 179 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + E N V+ I +LR K+ + + + R +GY + Sbjct: 180 NFDSETNTVDVAIRRLRAKVDDPFEKKLIMTVRGMGYRL 218 >gi|21222554|ref|NP_628333.1| two-component systen response regulator [Streptomyces coelicolor A3(2)] gi|7636029|emb|CAB88489.1| putative two-component systen response regulator [Streptomyces coelicolor A3(2)] Length = 248 Score = 151 bits (381), Expect = 7e-35, Method: Composition-based stats. Identities = 48/229 (20%), Positives = 91/229 (39%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V++ +G E ++ R D+ ++ L Sbjct: 17 ILIVDDEPAVREALQRSLAFEGYDTEVAVDGADALEKATAYRPDLVVLDI--QMPRMDGL 74 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 R IR A P++ ++ ++ + D+G DD + KP E+ AR+ A+ RR Sbjct: 75 TAARRIRGAGDLTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSS 134 Query: 121 V---------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 ++ + + R+ G L R E +LE MA+ + + + Sbjct: 135 YAAAVEATAEDDDTLTFADLTMDLATREVSRAGRPVELTRTEFTLLEMFMAHPRQVLTRE 194 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 QI A++G FD N ++ ++ LR+K V + R +GY + Sbjct: 195 QILKAVWG-FDFEPSSNSLDVYVMYLRRKTEAGGEPRLVHTVRGVGYVL 242 >gi|90426389|ref|YP_534759.1| two component transcriptional regulator [Rhodopseudomonas palustris BisB18] gi|90108403|gb|ABD90440.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris BisB18] Length = 234 Score = 151 bits (381), Expect = 7e-35, Method: Composition-based stats. Identities = 51/225 (22%), Positives = 94/225 (41%), Gaps = 8/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G +E + + D+ ++ L G + Sbjct: 5 ILVVEDEEALTTLLRYNLDAEGYDVETVARGDDADTRLKERIPDLVVLDWML--PGLSGI 62 Query: 62 ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IY 116 EL R +RA + P+I ++ + +G DD + KP E+LARV Sbjct: 63 ELCRRLRARPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLLRR 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + G I + D R G L E R+LE+ + + G+ ++ Q+ + Sbjct: 123 ASPERLATVLAYGDIELDRDKRRVARSGRPIDLGPTEYRLLEFFLEHPGRVFSREQLLDS 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G D ++E V+ HI +LRK L DP+ + R GY++D Sbjct: 183 VWGR-DIYIDERTVDVHIGRLRKLLNPGREQDPIRTVRGAGYALD 226 >gi|167632875|ref|ZP_02391201.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170686480|ref|ZP_02877701.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|227815224|ref|YP_002815233.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|167531687|gb|EDR94352.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170669556|gb|EDT20298.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|227004679|gb|ACP14422.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] Length = 225 Score = 151 bits (381), Expect = 7e-35, Method: Composition-based stats. Identities = 36/222 (16%), Positives = 94/222 (42%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ +G + + D+ ++ Sbjct: 5 ILIVDDDPHIRELVSVFLECEGFQTYEAIDGLDALQKINQVKVDMVILDIM--MPNMDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ +R + +P++ ++ + F G DD + KP E++ RV A+ +R ++ Sbjct: 63 DVCFELRKYYDIPILILTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 122 Query: 122 SNNRAETGPIR-VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + +++ + + + + LP +E +L L + G+ ++ Q+ ++G Sbjct: 123 TVSQSIQVGTVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG- 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D E ++ HI++LR+K + + + + R LGY ++ Sbjct: 182 YDFEGNERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLEV 223 >gi|78778522|ref|YP_396634.1| two component transcriptional regulator [Prochlorococcus marinus str. MIT 9312] gi|78712021|gb|ABB49198.1| two component transcriptional regulator, winged helix family [Prochlorococcus marinus str. MIT 9312] Length = 248 Score = 151 bits (381), Expect = 7e-35, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 91/228 (39%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD A ++ G + + + L D+ ++ Sbjct: 11 ILVADDEASIRRILETRLSMIGYKVVTASDGKEALKLFKDYEPDLVVLDVM--MPKLDGY 68 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + +R S VP++ ++ + + + G DD V KP +E+ AR+ + RR+ Sbjct: 69 GVCQELRKDSDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRIDK 128 Query: 122 SNNRAETG-------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 I++ ++ R E L E +LE L++ G+ ++ +I Sbjct: 129 DQIPGMPNSGLILVTDIKIDTNRRQVFKSDERIRLTGMEFSLLELLVSRSGEPFSRGEIL 188 Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++G + V+ VV+ HIS+LR KL + + + + R GY Sbjct: 189 KEVWGYTPERHVDTRVVDVHISRLRSKLEADPANPELILTARGTGYLF 236 >gi|31792171|ref|NP_854664.1| two component response transcriptional regulatory protein MprA [Mycobacterium bovis AF2122/97] gi|121636908|ref|YP_977131.1| two component response transcriptional regulatory protein MprA [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|215426257|ref|ZP_03424176.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis T92] gi|215429841|ref|ZP_03427760.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis EAS054] gi|219556849|ref|ZP_03535925.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis T17] gi|224989380|ref|YP_002644067.1| mycobacterial persistence regulator [Mycobacterium bovis BCG str. Tokyo 172] gi|260185890|ref|ZP_05763364.1| mycobacterial persistence regulator [Mycobacterium tuberculosis CPHL_A] gi|260200008|ref|ZP_05767499.1| mycobacterial persistence regulator [Mycobacterium tuberculosis T46] gi|260204195|ref|ZP_05771686.1| mycobacterial persistence regulator [Mycobacterium tuberculosis K85] gi|260204198|ref|ZP_05771689.1| mycobacterial persistence regulator [Mycobacterium tuberculosis K85] gi|289442401|ref|ZP_06432145.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis T46] gi|289446562|ref|ZP_06436306.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis CPHL_A] gi|289568958|ref|ZP_06449185.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis T17] gi|289573617|ref|ZP_06453844.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis K85] gi|289573619|ref|ZP_06453846.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis K85] gi|289749508|ref|ZP_06508886.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis T92] gi|289753038|ref|ZP_06512416.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis EAS054] gi|81712139|sp|Q7U0X4|MPRA_MYCBO RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial persistence regulator A gi|160012448|sp|A1KHB7|MPRA_MYCBP RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial persistence regulator A gi|29468250|gb|AAO85468.1| MprA [Mycobacterium bovis BCG] gi|31617759|emb|CAD93868.1| MYCOBACTERIAL PERSISTENCE REGULATOR MRPA (TWO COMPONENT RESPONSE TRANSCRIPTIONAL REGULATORY PROTEIN) [Mycobacterium bovis AF2122/97] gi|121492555|emb|CAL71023.1| Mycobacterial persistence regulator mrpA [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224772493|dbj|BAH25299.1| mycobacterial persistence regulator [Mycobacterium bovis BCG str. Tokyo 172] gi|289415320|gb|EFD12560.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis T46] gi|289419520|gb|EFD16721.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis CPHL_A] gi|289538048|gb|EFD42626.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis K85] gi|289538050|gb|EFD42628.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis K85] gi|289542712|gb|EFD46360.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis T17] gi|289690095|gb|EFD57524.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis T92] gi|289693625|gb|EFD61054.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis EAS054] Length = 230 Score = 151 bits (381), Expect = 7e-35, Method: Composition-based stats. Identities = 50/224 (22%), Positives = 97/224 (43%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V++ +G S+E + + +S R D ++ L Sbjct: 5 ILVVDDDRAVRESLRRSLSFNGYSVELAHDGVEALDMIASDRPDALVLDVM--MPRLDGL 62 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +R+ P++ ++ S+ + D+G DD + KP E+LAR+ A+ RR K Sbjct: 63 EVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTK 122 Query: 121 VSN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + + R+ L R E +LE L+AN + + +++I Sbjct: 123 PEDAAESMAMRFSDLTLDPVTREVNRGQRRISLTRTEFALLEMLIANPRRVLTRSRILEE 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G FD N +E ++ LR+K + + R +GY + Sbjct: 183 VWG-FDFPTSGNALEVYVGYLRRKTEADGEPRLIHTVRGVGYVL 225 >gi|270292778|ref|ZP_06198989.1| DNA-binding response regulator VicR [Streptococcus sp. M143] gi|270278757|gb|EFA24603.1| DNA-binding response regulator VicR [Streptococcus sp. M143] Length = 235 Score = 151 bits (381), Expect = 7e-35, Method: Composition-based stats. Identities = 49/234 (20%), Positives = 98/234 (41%), Gaps = 15/234 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + + L + + D+ ++ L L Sbjct: 4 ILVVDDEKPISDIIKFNMTKEGYEVVTAFNGREAIELFEAEQPDIIILDLML--PEIDGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-------- 113 E+ + IR S VP+I +S S + + G DD V KP +RE+ ARV Sbjct: 62 EVAKTIRKTSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTDL 121 Query: 114 ---AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + + + G + + D + GE L RE +L +L ++ G+ + + Sbjct: 122 ASVDSQETDEKKSQPLQIGDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHIGQVITR 181 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223 + ++G +D + V+ I +LR+K+ + + + ++R +GY + N Sbjct: 182 EHLLETVWG-YDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 234 >gi|229196205|ref|ZP_04322954.1| DNA-binding response regulator [Bacillus cereus m1293] gi|228587270|gb|EEK45339.1| DNA-binding response regulator [Bacillus cereus m1293] Length = 225 Score = 151 bits (381), Expect = 7e-35, Method: Composition-based stats. Identities = 35/222 (15%), Positives = 93/222 (41%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ +G + D+ ++ Sbjct: 5 ILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKIDEVKVDMVILDIM--MPNMDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ +R + +P++ ++ + F G DD + KP E++ RV A+ +R ++ Sbjct: 63 DVCFELRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 122 Query: 122 SNNRAETGPIR-VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + +++ + + + + LP +E +L L + G+ ++ Q+ ++G Sbjct: 123 TVSQSIQVGNVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG- 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D E ++ H+++LR+K + + + + R LGY ++ Sbjct: 182 YDFEGNERTLDVHMNRLREKFQEEKSRFSIKTIRGLGYRLEV 223 >gi|162139597|ref|YP_216033.2| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322714084|gb|EFZ05655.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 226 Score = 151 bits (381), Expect = 7e-35, Method: Composition-based stats. Identities = 47/219 (21%), Positives = 92/219 (42%), Gaps = 3/219 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D + + G ++ L + ++ L G Sbjct: 3 ILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIML--PGLDGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R +R Q P I ++ S++ + ++G +D + KP E+LARV A R+ Sbjct: 61 QVLRALRTAHQSPAICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHVP 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 R + + + + G+ L R+E +L L + G+ V +T I S ++G+ Sbjct: 121 VFTRLTINGLDMDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWGI- 179 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + E N V+ I +LR K+ + + + R +GY + Sbjct: 180 NFDSETNTVDVAIRRLRAKVDDPFEKKLIMTVRGMGYRL 218 >gi|119510886|ref|ZP_01630010.1| Two component Transcriptional regulator, Winged helix family protein [Nodularia spumigena CCY9414] gi|119464495|gb|EAW45408.1| Two component Transcriptional regulator, Winged helix family protein [Nodularia spumigena CCY9414] Length = 250 Score = 151 bits (381), Expect = 7e-35, Method: Composition-based stats. Identities = 38/232 (16%), Positives = 85/232 (36%), Gaps = 16/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARE-------DVSAIEAFLI 54 ++++D L+++ ++G + S D+ ++ L Sbjct: 21 ILVVEDEELIQEMLAVALEEEGFGVITAPDGRSAVEYLKSCEPNSGEPPFDLIILDLML- 79 Query: 55 GKGEKVLELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EIL 109 L++ R++ + VP++ +S S + + G DD + KP R Sbjct: 80 -PHINGLDICRLLRHQGNPVPILILSAKGSETDRVLGLEVGADDYLTKPFSMRELVARCR 138 Query: 110 ARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 A + + + + V+ + L +E R+LE M+ + + Sbjct: 139 ALLRRQRLSSLPQLQVLKHKNVTLNPQECRVLVRDQEVSLSPKEFRLLELFMSYARRVWS 198 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220 + Q+ ++G + + V+ HI LR+KL + + + + R GY Sbjct: 199 REQLLDQVWG-PEFVGDSKTVDVHIRWLREKLEEDPSHPEYIVTVRGFGYRF 249 >gi|317122468|ref|YP_004102471.1| transcriptional regulator [Thermaerobacter marianensis DSM 12885] gi|315592448|gb|ADU51744.1| two component transcriptional regulator, winged helix family [Thermaerobacter marianensis DSM 12885] Length = 255 Score = 151 bits (381), Expect = 7e-35, Method: Composition-based stats. Identities = 43/221 (19%), Positives = 84/221 (38%), Gaps = 7/221 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + +G+ R V ++ L Sbjct: 34 LVVDDEDALLELVAYNLRRNGMEPVLARDGAEALRCIEERRPQVIILDVML--PDTDGFT 91 Query: 63 LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R +R Q P++ ++ S + + G DD V KP RE+ + Sbjct: 92 LCRHLRERGVQTPILMLTARDSEIDKVLGLELGADDYVTKPFSPREL--VARIKALLRRT 149 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 R + GPI + G + G+ L E ++L L + G+ ++ ++ ++G Sbjct: 150 EGRRQQVGPIVIDYAGHEVYRDGQRVQLTPTEFKLLATLASEPGRAFSRQELLDRVWGE- 208 Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 D + V+ H+ LR+KL N + + + R GY ++ Sbjct: 209 DAFGDPRTVDVHVRHLREKLERNPSQPEWILTVRGHGYKLN 249 >gi|311070584|ref|YP_003975507.1| YycF protein [Bacillus atrophaeus 1942] gi|310871101|gb|ADP34576.1| YycF [Bacillus atrophaeus 1942] Length = 236 Score = 151 bits (381), Expect = 7e-35, Method: Composition-based stats. Identities = 41/228 (17%), Positives = 92/228 (40%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + + + D+ ++ L + + Sbjct: 6 ILVVDDEKPIADILEFNLRKEGYEVHCAYDGNEAVEMVEEIQPDLILLDIML--PNKDGV 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR--------EILARVA 113 E+ R +R +P+I ++ S + + G DD V KP R + ++ Sbjct: 64 EVCREVRKKYDMPIIMLTAKDSEIDKVIGLELGADDYVTKPFSTRELLARVKANLRRQLT 123 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + S+N G + +F D + E L RE +L YL + G+ + + + Sbjct: 124 TAPAEEESSSNDIHIGSLVIFPDAYVVSKREETIELTHREFELLHYLAKHIGQVMTREHL 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++G +D + V+ + +LR+K+ + + + ++R +GY + Sbjct: 184 LQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPNWIVTRRGVGYYL 230 >gi|206972693|ref|ZP_03233632.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|229068014|ref|ZP_04201325.1| Two-component response regulator [Bacillus cereus F65185] gi|229077615|ref|ZP_04210248.1| Two-component response regulator [Bacillus cereus Rock4-2] gi|206732379|gb|EDZ49562.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|228705695|gb|EEL58048.1| Two-component response regulator [Bacillus cereus Rock4-2] gi|228715117|gb|EEL66981.1| Two-component response regulator [Bacillus cereus F65185] Length = 233 Score = 151 bits (381), Expect = 7e-35, Method: Composition-based stats. Identities = 46/230 (20%), Positives = 89/230 (38%), Gaps = 11/230 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ ++G + E L + ++ + Sbjct: 6 ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIM--MPKVDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + +R ++P+I +S + +G DD V KP + E++AR+ + RR Sbjct: 64 HMCMKVREAKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMK 123 Query: 122 SNNRAETG-------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N A +++ V+GE L RE ILE L N G + QI+ Sbjct: 124 MNGFAVQNEDELEIGEMKINISTHKVVVEGEEVKLTPREFSILELLARNPGMVFSAEQIY 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223 ++ +N V HI K+R+K+ + + +GY I+ + Sbjct: 184 EKVWNERSFQ-SDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGYKIEKD 232 >gi|325962194|ref|YP_004240100.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Arthrobacter phenanthrenivorans Sphe3] gi|323468281|gb|ADX71966.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Arthrobacter phenanthrenivorans Sphe3] Length = 226 Score = 151 bits (381), Expect = 7e-35, Method: Composition-based stats. Identities = 49/225 (21%), Positives = 98/225 (43%), Gaps = 8/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D D L G +G +E ++ D+ ++ L G+ Sbjct: 4 ILIVEDEESFSDPLSYLLGKEGFEVEVVDNGLDAITEFDRNGADLVLLDLQL--PGQSGT 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117 E+ R +R S VP+I ++ + + + G DD V KP R + A + Sbjct: 62 EVCRQLRQRSSVPVIMLTAKDAEIDKVVGLELGADDYVTKPYSSRELVARVRAVLRRQGE 121 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 ++ ++ + GP+R+ + V GE LP +E +LE L+ N G+ + + Q+ + Sbjct: 122 PEELISSTVQAGPVRMDIERHVVSVGGEQVLLPLKEFELLEMLLRNSGRVLTRGQLIDRV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 +G D + ++ H+ +LR K+ + + + R LGY + Sbjct: 182 WG-SDYVGDTKTLDVHVKRLRGKIEPDPSAPRYLVTVRGLGYKFE 225 >gi|307704960|ref|ZP_07641848.1| response regulator [Streptococcus mitis SK597] gi|307709233|ref|ZP_07645692.1| response regulator [Streptococcus mitis SK564] gi|307620179|gb|EFN99296.1| response regulator [Streptococcus mitis SK564] gi|307621470|gb|EFO00519.1| response regulator [Streptococcus mitis SK597] Length = 235 Score = 151 bits (381), Expect = 7e-35, Method: Composition-based stats. Identities = 48/234 (20%), Positives = 96/234 (41%), Gaps = 15/234 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + + + + D+ ++ L L Sbjct: 4 ILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILDLML--PEIDGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-------- 113 E+ + IR S VP+I +S S + + G DD V KP +RE+ ARV Sbjct: 62 EVAKTIRKTSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTDL 121 Query: 114 ---AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + + G + + D + GE L RE +L +L ++ G+ + + Sbjct: 122 ASVDNQESDENKTQPLQIGDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHIGQVITR 181 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223 + ++G +D + V+ I +LR+K+ + + + ++R +GY + N Sbjct: 182 EHLLETVWG-YDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 234 >gi|302535864|ref|ZP_07288206.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. C] gi|302444759|gb|EFL16575.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. C] Length = 226 Score = 151 bits (381), Expect = 7e-35, Method: Composition-based stats. Identities = 52/224 (23%), Positives = 95/224 (42%), Gaps = 8/224 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D D + +G + + D+ ++ L G E Sbjct: 5 LVVEDEESFSDALSYMLRKEGFEVAIAATGPDGLDEFERNGADLVLLDLML--PGLPGTE 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +R S VP+I ++ S + + G DD V KP RE++AR+ A+ RR Sbjct: 63 VCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGEP 122 Query: 123 NNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 GP+R+ D V G LP +E +LE L+ N G+ + + Q+ ++ Sbjct: 123 EEVTPAALEAGPVRMDVDRHVVTVAGAKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRVW 182 Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 G D + ++ H+ +LR K+ + + + R LGY + Sbjct: 183 GA-DYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFE 225 >gi|47565258|ref|ZP_00236300.1| DNA-binding response regulator VicR [Bacillus cereus G9241] gi|208742147|ref|YP_002267599.1| two component transcriptional regulator [Bacillus cereus] gi|47557612|gb|EAL15938.1| DNA-binding response regulator VicR [Bacillus cereus G9241] Length = 237 Score = 151 bits (381), Expect = 7e-35, Method: Composition-based stats. Identities = 43/231 (18%), Positives = 94/231 (40%), Gaps = 12/231 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D +++ + + + + L + + D+ ++ + K Sbjct: 5 ILIIEDEENIREVCKQYLEREEYEVYTAVNGKEGWELFLTHQPDLIILDLMMPQK--NGW 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL IR S VP+I ++ + + G DD + KP E++ R+ I+RR Sbjct: 63 ELCEEIRQKSNVPIIMLTAKGEERNRILGLTIGADDYLTKPFSPHELVLRIQIIFRRGSQ 122 Query: 122 SNNR--------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + E ++++ R V + L +E +L + + + +++Q+ Sbjct: 123 VSIQAKDSLLELIEFPDLKIYPKTRYVLVCNKEVELTVKEFEVLYLMAKHPKQVFSRSQL 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223 I+G F+ N V +S+LR+KL + + +GY + N Sbjct: 183 LELIWG-FEYEGVSNTVTVLVSRLREKLEKHTIKNRWIHTIWGIGYRFEPN 232 >gi|154498426|ref|ZP_02036804.1| hypothetical protein BACCAP_02415 [Bacteroides capillosus ATCC 29799] gi|150272494|gb|EDM99679.1| hypothetical protein BACCAP_02415 [Bacteroides capillosus ATCC 29799] Length = 226 Score = 151 bits (381), Expect = 7e-35, Method: Composition-based stats. Identities = 55/225 (24%), Positives = 99/225 (44%), Gaps = 6/225 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + +G +E S D+ ++ L + Sbjct: 4 ILLVEDEEKLARVVELELRYEGYEVEKAFDGREGLEKALSGGFDLVLLDIML--PSMSGM 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119 E+ R +R SQVP+I ++ ++ + DSG DD + KP E+ R A R + Sbjct: 62 EVLRRLRRESQVPVIMVTARDTVVDKVSGLDSGADDYITKPFEIEELLARIRAALRKRPV 121 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + GP+ + + + V+G L RRE +L YL+ N+ K +++ + ++G Sbjct: 122 RQESAVLTAGPLTMDPERHEVTVKGTPVELTRREFDLLRYLLENKEKVISRESLLDNVWG 181 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI-DWN 223 FD E N V+ +I LR K+ G + + R +GY I + N Sbjct: 182 -FDFVGETNAVDVYIRFLRAKIDEAFGIKLIHTVRGVGYVIREEN 225 >gi|114567196|ref|YP_754350.1| response regulator receiver protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114338131|gb|ABI68979.1| response regulator receiver protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 227 Score = 151 bits (381), Expect = 7e-35, Method: Composition-based stats. Identities = 39/223 (17%), Positives = 83/223 (37%), Gaps = 6/223 (2%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + +L++D ++D +G + + + D+ ++ L G Sbjct: 4 LILLVEDEKKIRDMLSKHLRQEGFRVALAADGLEALQIWQDIKPDLIVLDLML--PGLSG 61 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--ILARVAAIYRR 118 E+ + IR + P+I ++ L + G DD + KP RE + + R Sbjct: 62 WEVMKKIRQKNNTPIIVLTARVDEVDKLLGLELGADDYITKPFSPRELALRIKAVLRRSR 121 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + + + + + L E +IL L N G+ ++ I ++ Sbjct: 122 PHEQVTNVSISNLSINPERLEALIGDTLLALTPTEFKILLLLAENPGQVFSRLHILERVF 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220 G E +++HIS LR K+ + + + +GY + Sbjct: 182 GDI-YEGYERTIDTHISNLRHKIEATGKSEISIKTVYGIGYKL 223 >gi|256786305|ref|ZP_05524736.1| response regulator [Streptomyces lividans TK24] gi|289770196|ref|ZP_06529574.1| response regulator [Streptomyces lividans TK24] gi|289700395|gb|EFD67824.1| response regulator [Streptomyces lividans TK24] Length = 226 Score = 151 bits (381), Expect = 7e-35, Method: Composition-based stats. Identities = 50/224 (22%), Positives = 92/224 (41%), Gaps = 8/224 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D D + +G + + D+ ++ L G E Sbjct: 5 LVVEDEESFSDALSYMLRKEGFEVAIATTGPDGLDEFERNGADLVLLDLML--PGLPGTE 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYRR 118 + R +R S VP+I ++ S + + G DD V KP R I A + Sbjct: 63 VCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGEP 122 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 +V+ E GP+R+ D V G LP +E +LE L+ N G+ + + Q+ ++ Sbjct: 123 EEVAPAALEAGPVRMDVDRHVVTVGGTKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRVW 182 Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 G D + ++ H+ +LR K+ + + + R LGY + Sbjct: 183 GA-DYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFE 225 >gi|218247106|ref|YP_002372477.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 8801] gi|257060175|ref|YP_003138063.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8802] gi|218167584|gb|ACK66321.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8801] gi|256590341|gb|ACV01228.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8802] Length = 243 Score = 151 bits (381), Expect = 7e-35, Method: Composition-based stats. Identities = 47/228 (20%), Positives = 96/228 (42%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++ G + E A D+ ++ Sbjct: 8 ILVVDDEASIRRILETRLSMIGYDVVTAADGEEALDTFHKADPDLVVLDVM--MPKLDGY 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + +R S +P+I ++ + + + G DD V KP +E+ AR+ ++ RR++ Sbjct: 66 GVCQELRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVEK 125 Query: 122 SNNRA-------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + IR+ ++ R E L E +LE L++ G+ ++++I Sbjct: 126 NGVPGIPSSGVLQIASIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEIL 185 Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 ++G + V+ VV+ HIS+LR KL + + + + R GY Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLF 233 >gi|148379031|ref|YP_001253572.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 3502] gi|153932373|ref|YP_001383413.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|153935682|ref|YP_001386960.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|148288515|emb|CAL82594.1| two-component response regulator [Clostridium botulinum A str. ATCC 3502] gi|152928417|gb|ABS33917.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|152931596|gb|ABS37095.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] Length = 233 Score = 151 bits (381), Expect = 7e-35, Method: Composition-based stats. Identities = 42/226 (18%), Positives = 84/226 (37%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D A + + E L + ++ L Sbjct: 7 ILVVDDEERILDVVKAYLEKEDYEVITAMDGEEAIKLFKEISFHLVILDLML--PKISGE 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL------ARVAAI 115 E+ IR S V +I ++ + L+ G DD + KP RE++ R A Sbjct: 65 EVCSKIREFSNVLIIMLTAKVEEEDKLEGLSIGADDYLTKPFSVRELVARVKALIRRAYR 124 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + G + V G+V L E ++L L+ N G+ + Q+ Sbjct: 125 GKYPLAEHLILNNGDLEVDIRKMKVLKNGKVVTLTPYEFKVLVSLLTNPGQVFTREQLVE 184 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 +G +D + V+++I +R+K+ + + + + +GY Sbjct: 185 QAFG-YDYESFDRTVDTYIKNIRQKIEDNPKAPNYITTVYGVGYRF 229 >gi|21222625|ref|NP_628404.1| response regulator [Streptomyces coelicolor A3(2)] gi|7242751|emb|CAB77324.1| putative response regulator [Streptomyces coelicolor A3(2)] gi|298285547|emb|CAD67559.2| regulatory protein [Streptomyces lividans] Length = 223 Score = 151 bits (381), Expect = 7e-35, Method: Composition-based stats. Identities = 50/224 (22%), Positives = 92/224 (41%), Gaps = 8/224 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D D + +G + + D+ ++ L G E Sbjct: 2 LVVEDEESFSDALSYMLRKEGFEVAIATTGPDGLDEFERNGADLVLLDLML--PGLPGTE 59 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYRR 118 + R +R S VP+I ++ S + + G DD V KP R I A + Sbjct: 60 VCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGEP 119 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 +V+ E GP+R+ D V G LP +E +LE L+ N G+ + + Q+ ++ Sbjct: 120 EEVAPAALEAGPVRMDVDRHVVTVGGTKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRVW 179 Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 G D + ++ H+ +LR K+ + + + R LGY + Sbjct: 180 GA-DYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFE 222 >gi|314933669|ref|ZP_07841034.1| DNA-binding response regulator SrrA [Staphylococcus caprae C87] gi|313653819|gb|EFS17576.1| DNA-binding response regulator SrrA [Staphylococcus caprae C87] Length = 241 Score = 151 bits (381), Expect = 7e-35, Method: Composition-based stats. Identities = 37/232 (15%), Positives = 84/232 (36%), Gaps = 14/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ + + + + L ++ L + Sbjct: 5 ILIVDDEDRIRRLLKLYLERESFEIHEASDGKEAYQLAMDNNYACILLDLML--PEMDGI 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112 E+ +R H P+I ++ ++ F+SG DD + KP RE + Sbjct: 63 EVASKLREHKDTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQS 122 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 A + + + E + + +D E L +E +L YL K + Q Sbjct: 123 ANSEQSEPHARDIIEFNHLVIDNDAHRVLADNEQVNLTPKEYELLIYLAKTPNKVFDREQ 182 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSIDW 222 + ++ ++ + V++H+ +LR+KL + + + +GY + Sbjct: 183 LLKDVW-HYEFYGDLRTVDTHVKRLREKLNRVSNDAAQMIQTVWGVGYKFEV 233 >gi|218895381|ref|YP_002443792.1| DNA-binding response regulator [Bacillus cereus G9842] gi|228906040|ref|ZP_04069931.1| Two-component response regulator [Bacillus thuringiensis IBL 200] gi|228963358|ref|ZP_04124521.1| Two-component response regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|218542285|gb|ACK94679.1| DNA-binding response regulator [Bacillus cereus G9842] gi|228796345|gb|EEM43790.1| Two-component response regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|228853610|gb|EEM98376.1| Two-component response regulator [Bacillus thuringiensis IBL 200] Length = 233 Score = 151 bits (381), Expect = 7e-35, Method: Composition-based stats. Identities = 46/230 (20%), Positives = 89/230 (38%), Gaps = 11/230 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ ++G + E L + ++ + Sbjct: 6 ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIM--MPKVDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + +R ++P+I +S + +G DD V KP + E++AR+ + RR Sbjct: 64 HMCMKVREAKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMK 123 Query: 122 SNNRAETG-------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N A +++ V+GE L RE ILE L N G + QI+ Sbjct: 124 MNGFAVQNEDELEIGEMKINISTHKVIVEGEEVKLTPREFSILELLTRNPGMVFSAEQIY 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223 ++ +N V HI K+R+K+ + + +GY I+ + Sbjct: 184 EKVWNERSFQ-SDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGYKIEKD 232 >gi|123967688|ref|YP_001008546.1| two-component response regulator [Prochlorococcus marinus str. AS9601] gi|123197798|gb|ABM69439.1| two-component response regulator [Prochlorococcus marinus str. AS9601] Length = 248 Score = 151 bits (381), Expect = 7e-35, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 91/228 (39%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD A ++ G + + + L D+ ++ Sbjct: 11 ILVADDEASIRRILETRLSMIGYKVVTASDGKEALKLFKDYEPDLVVLDVM--MPKLDGY 68 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + +R S VP++ ++ + + + G DD V KP +E+ AR+ + RR+ Sbjct: 69 GVCQELRKDSDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRIDK 128 Query: 122 SNNRAETG-------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 I++ ++ R E L E +LE L++ G+ ++ +I Sbjct: 129 EQIPGMPNSGLILVTDIKIDTNRRQVFKSDERIRLTGMEFSLLELLVSRSGEPFSRGEIL 188 Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++G + V+ VV+ HIS+LR KL + + + + R GY Sbjct: 189 KEVWGYTPERHVDTRVVDVHISRLRSKLEADPANPELILTARGTGYLF 236 >gi|160878314|ref|YP_001557282.1| two component transcriptional regulator [Clostridium phytofermentans ISDg] gi|160426980|gb|ABX40543.1| two component transcriptional regulator, winged helix family [Clostridium phytofermentans ISDg] Length = 238 Score = 151 bits (381), Expect = 7e-35, Method: Composition-based stats. Identities = 34/233 (14%), Positives = 88/233 (37%), Gaps = 16/233 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A + + + + E + ++ ++ L G Sbjct: 7 ILIVDDDANIAELISLYLMKECFDTKIVYDGEEAITQYREYQPNLILLDLML--PGIDGY 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH------------HREIL 109 E+ R +R S +P+I +S + + + G DD + KP R + Sbjct: 65 EVCREVRKTSTIPIIMLSAKGEIFDKVLGLELGADDYMIKPFDTKELVARVKAVLRRVVP 124 Query: 110 ARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 ++ + + + + + G+ +P +E + +L ++ + Sbjct: 125 SQSTSEQVITQELGDFVSYPDLIINQSNYSVTYFGDSIEMPPKELELFYFLASHPNQVFT 184 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + Q+ I+G ++ + V+ HI +LR+K+++ + + + +GY + Sbjct: 185 REQLLDHIWG-YEYIGDTRTVDVHIKRLREKIKDHISWRL-STVWGIGYKFEV 235 >gi|72383336|ref|YP_292691.1| two component transcriptional regulator [Prochlorococcus marinus str. NATL2A] gi|72003186|gb|AAZ58988.1| two component transcriptional regulator, winged helix family [Prochlorococcus marinus str. NATL2A] Length = 248 Score = 151 bits (381), Expect = 7e-35, Method: Composition-based stats. Identities = 44/228 (19%), Positives = 91/228 (39%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD A ++ G + L + D+ ++ Sbjct: 11 ILVADDEASIRRILETRLSMIGYQVVTACDGNEALDLFRNCEPDLVVLDVM--MPKLDGY 68 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + +R S VP++ ++ + + + G DD V KP +E+ AR+ + RR++ Sbjct: 69 GVCQELRKESDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRVEK 128 Query: 122 SNN-------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 +++ ++ R E L E +LE L++ G+ ++ +I Sbjct: 129 EQIAGLPNSGVIAVMNLKIDTNKRQVYRNDERIRLTGMEFSLLELLVSRSGEPFSRGEIL 188 Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 ++G + V+ VV+ HIS+LR KL + + + + R GY Sbjct: 189 KEVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGYLF 236 >gi|312141110|ref|YP_004008446.1| two component system response regulator [Rhodococcus equi 103S] gi|311890449|emb|CBH49767.1| two component system response regulator [Rhodococcus equi 103S] Length = 226 Score = 151 bits (381), Expect = 7e-35, Method: Composition-based stats. Identities = 51/228 (22%), Positives = 100/228 (43%), Gaps = 11/228 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + D L +G + D+ ++ L G + Sbjct: 2 LIVEDEESLADPLAFLLRKEGFETTVVGDGPSALAEFERSGADIVLLDVML--PGMSGTD 59 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + +RA S VP+I ++ S + + G DD V KP RE++AR+ A+ RR + Sbjct: 60 VCKQLRAKSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGADN 119 Query: 123 NNRAETG-------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + P+R+ + V G+ LP +E +LEYL+ N G+ + + Q+ Sbjct: 120 EAATDVDDGVLAAGPVRMDVERHLVHVNGDPVTLPLKEFDLLEYLLRNSGRVLTRGQLID 179 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 ++G D + ++ H+ +LR K+ + + + R LGY ++ Sbjct: 180 RVWGA-DYVGDTKTLDVHVKRLRAKIEGDPGKPKHLVTVRGLGYKLEE 226 >gi|228937554|ref|ZP_04100195.1| Two-component response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228970441|ref|ZP_04131095.1| Two-component response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228977011|ref|ZP_04137418.1| Two-component response regulator [Bacillus thuringiensis Bt407] gi|228782721|gb|EEM30892.1| Two-component response regulator [Bacillus thuringiensis Bt407] gi|228789290|gb|EEM37215.1| Two-component response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228822128|gb|EEM68115.1| Two-component response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326938044|gb|AEA13940.1| two-component response regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 233 Score = 151 bits (381), Expect = 7e-35, Method: Composition-based stats. Identities = 46/230 (20%), Positives = 89/230 (38%), Gaps = 11/230 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ ++G + E L + ++ + Sbjct: 6 ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIM--MPKVDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + +R ++P+I +S + +G DD V KP + E++AR+ + RR Sbjct: 64 HMCMKVRESKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMK 123 Query: 122 SNNRAETG-------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N A +++ V+GE L RE ILE L N G + QI+ Sbjct: 124 MNGFAIQNEDELEIGEMKINISTHKVIVEGEEVKLTPREFSILELLARNPGMVFSAEQIY 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223 ++ +N V HI K+R+K+ + + +GY I+ + Sbjct: 184 EKVWNERSFQ-SDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGYKIEKD 232 >gi|170748757|ref|YP_001755017.1| two component transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170655279|gb|ACB24334.1| two component transcriptional regulator, winged helix family [Methylobacterium radiotolerans JCM 2831] Length = 231 Score = 151 bits (381), Expect = 7e-35, Method: Composition-based stats. Identities = 51/225 (22%), Positives = 94/225 (41%), Gaps = 8/225 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + +G ++ + E L + D+ ++ L G +E Sbjct: 4 LIVEDEEALTTLLRYNLEAEGFLVDSAARGDDAELLLAERIPDLVLLDWML--PGLSGIE 61 Query: 63 LPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYR 117 L R IRA + P+I ++ + +G DD + KP E+ R Sbjct: 62 LCRRIRARRETERLPVIMLTARGEEGDRVRGLGTGADDYIVKPFSVPELLARIRALLRRA 121 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + ++R G + + G GE L E R+LE+LM G+ ++ Q+ + Sbjct: 122 KPAHVSDRLAAGDLELDRTGHRVRRGGEELHLGPTEFRLLEFLMLAPGRVFSREQLLDGV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +G D ++E V+ H+ +LRK L DP+ + R GY+ D Sbjct: 182 WG-HDVYIDERTVDVHVGRLRKALNGPRQADPIRTVRGSGYAFDE 225 >gi|220932997|ref|YP_002509905.1| two component transcriptional regulator, winged helix family [Halothermothrix orenii H 168] gi|219994307|gb|ACL70910.1| two component transcriptional regulator, winged helix family [Halothermothrix orenii H 168] Length = 226 Score = 151 bits (381), Expect = 7e-35, Method: Composition-based stats. Identities = 44/225 (19%), Positives = 87/225 (38%), Gaps = 12/225 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++IDD +++ G +E E + D+ ++ L G Sbjct: 4 ILVIDDEENIRELIKFNLETAGYRVELAADGEEGWDRL-NDSIDLIILDLMLPRIDGLSF 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAI 115 R +P+I ++ + + G DD + KP RE++AR Sbjct: 63 CRQVRSNNRFKDIPIIMLTAKGEEVDKIIGLEMGADDYITKPFSPRELVARIKAVLRRVQ 122 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 K N + + + GEV L +E +L +L+ N GK + + + Sbjct: 123 KNEEKSDNELIKKADFELDVSSHEARKGGEVLNLTPKEFDLLRHLLVNSGKVLTRDILLE 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G ++ A + V+ HI +LR+K+ + + + + R +GY Sbjct: 183 KVWG-YEYAGDTRTVDVHIRRLRRKIGD----NYIVTVRGVGYKF 222 >gi|289434076|ref|YP_003463948.1| DNA-binding two-component response regulator [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170320|emb|CBH26860.1| DNA-binding two-component response regulator [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|313634218|gb|EFS00857.1| heme response regulator HssR [Listeria seeligeri FSL N1-067] gi|313638846|gb|EFS03909.1| heme response regulator HssR [Listeria seeligeri FSL S4-171] Length = 225 Score = 151 bits (381), Expect = 7e-35, Method: Composition-based stats. Identities = 40/223 (17%), Positives = 92/223 (41%), Gaps = 5/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ +G ++ E E + +S + ++ I+ Sbjct: 4 ILVVDDDKHIRQLVGHYLRREGFAVLEAMDGEAAEQIVTSQQVHLAVIDLM--MPKMDGF 61 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL + IR ++ ++P+I ++ +L F+ G DD V KP E++ R+ A+ RR Sbjct: 62 ELCQKIRTSYPEIPVIMLTAKDALIDKSRGFEVGTDDYVTKPFEPEELVFRIRALLRRST 121 Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++ + ++ +P +E +L L + G+ + ++ I+ Sbjct: 122 QASEVKIKIGQLTIDQKSYGIKIGNRELMIPVKEFELLYQLASYPGRIFTREELIERIW- 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 D + ++ HI +LR + + + R +GY ++ Sbjct: 181 KRDYDGSDRTIDVHIKRLRDHFDEEKAGIRITTVRGVGYKLEE 223 >gi|108797641|ref|YP_637838.1| two component transcriptional regulator [Mycobacterium sp. MCS] gi|119866728|ref|YP_936680.1| two component transcriptional regulator [Mycobacterium sp. KMS] gi|126433265|ref|YP_001068956.1| two component transcriptional regulator [Mycobacterium sp. JLS] gi|108768060|gb|ABG06782.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. MCS] gi|119692817|gb|ABL89890.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. KMS] gi|126233065|gb|ABN96465.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. JLS] Length = 228 Score = 151 bits (381), Expect = 7e-35, Method: Composition-based stats. Identities = 53/226 (23%), Positives = 100/226 (44%), Gaps = 10/226 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + D L +G A D+ ++ L G + Sbjct: 5 LIVEDEESLADPLAFLLRKEGFETTVVADGPSALAEFDRAGADIVLLDLML--PGMSGTD 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + +RA S VP+I ++ S + + G DD V KP RE++AR+ A+ RR Sbjct: 63 VCKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGTDV 122 Query: 123 NNRAETG------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 ++ P+R+ + V G+ LP +E +LEYLM N G+ + + Q+ Sbjct: 123 DDPGVPDGVLEAGPVRMDVERHVVSVNGQSITLPLKEFDLLEYLMRNSGRVLTRGQLIDR 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 ++G D + ++ H+ +LR K+ + + + R LGY ++ Sbjct: 183 VWGA-DYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVRGLGYKLE 227 >gi|238792116|ref|ZP_04635752.1| Transcriptional regulatory protein baeR [Yersinia intermedia ATCC 29909] gi|238728747|gb|EEQ20265.1| Transcriptional regulatory protein baeR [Yersinia intermedia ATCC 29909] Length = 239 Score = 151 bits (381), Expect = 7e-35, Method: Composition-based stats. Identities = 44/221 (19%), Positives = 86/221 (38%), Gaps = 5/221 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + + G + + + + ++ L G + Sbjct: 15 LIVEDEPKLGQLLVDYLQAAGYQTQWLTRGDEVVAAVRQSPPAIILLDLML--PGSDGIT 72 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR S VP++ ++ L + G DD + KP RE++ARV I RR + Sbjct: 73 ICREIRRFSDVPIMMVTAKTEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCRPL 132 Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + QG L E R+L+ L G ++ Q+ + +Y + Sbjct: 133 PQQPSETVPLLIDESRFQASYQGHSLELTPAEFRLLKILATQPGHVFSREQLLNNLYDDY 192 Query: 182 DEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 V + ++SHI LR+KL + + + +GY + Sbjct: 193 -RVVTDRTIDSHIKNLRRKLESLDGEKPFIRAVYGMGYRWE 232 >gi|291563400|emb|CBL42216.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [butyrate-producing bacterium SS3/4] Length = 230 Score = 151 bits (381), Expect = 7e-35, Method: Composition-based stats. Identities = 39/229 (17%), Positives = 89/229 (38%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +L+DD ++ +G+ + L + + ++ + G V Sbjct: 6 ILLVDDERAIRLAVRTALTREGMQVTEAADGSEALELLKKQQFHLVILDVMMEHVGGYDV 65 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L+ R A P++ +S + G D + KP H ++ A+ RR + Sbjct: 66 LQAMRA--AGDHTPVMMLSGKSDEMDQVLGLGFGADSYLTKPFHTAILIQTAKALIRRSQ 123 Query: 121 VSNN------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + GP V + + GE RE + +LM + G+ K Q++ Sbjct: 124 IYSQGAAGDAGIRKGPFTVDTLKMECLKNGEPLNFTAREMTLFRFLMEHPGQVFTKEQLY 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDW 222 + ++ + V++N + ++ ++R K+ + + + R +GY ++ Sbjct: 184 TQVWN--EAVVDDNTITVYVKRIRNKIEDDPKQPRYLKTVRGIGYMLNV 230 >gi|239637987|ref|ZP_04678948.1| transcriptional regulatory protein [Staphylococcus warneri L37603] gi|239596550|gb|EEQ79086.1| transcriptional regulatory protein [Staphylococcus warneri L37603] Length = 236 Score = 151 bits (381), Expect = 7e-35, Method: Composition-based stats. Identities = 47/230 (20%), Positives = 98/230 (42%), Gaps = 14/230 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + G +E E ++ D+ ++ L + +E Sbjct: 6 LVVDDEQSIVTLLKYNLETAGYIVEVAYDGEEALQKVELSQPDLIVLDVML--PKKDGIE 63 Query: 63 LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + IR+ VP++ ++ + + G DD + KP RE++ARV AI RR + Sbjct: 64 VCKTIRSDKNLVPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRRSQF 123 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPL---------PRRERRILEYLMANRGKRVAKTQ 172 N ++ ++ E F + +E +L YL+ +G+ + + Sbjct: 124 VNEVEQSETDDEDIIIDSIRIRPEFFEVYKDDELLELTPKEFELLLYLIERQGRVITREH 183 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221 + ++++ ++ A + +V+ HIS LR KL + + R LGY ++ Sbjct: 184 MLNSVW-NYEFAGDSRIVDVHISHLRDKLEENPKQPKLIKTVRGLGYKLE 232 >gi|254490292|ref|ZP_05103481.1| phosphate regulon transcriptional regulatory protein PhoB [Methylophaga thiooxidans DMS010] gi|224464425|gb|EEF80685.1| phosphate regulon transcriptional regulatory protein PhoB [Methylophaga thiooxydans DMS010] Length = 230 Score = 151 bits (381), Expect = 7e-35, Method: Composition-based stats. Identities = 47/225 (20%), Positives = 91/225 (40%), Gaps = 10/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D ++D G + E + D+ ++ L G +E Sbjct: 6 LVVEDDVAIRDMLSFTLKQAGFGCDSVGDGEAGLDFLKKQQPDMILLDWML--PGIDGIE 63 Query: 63 LPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 R +RA+ + +P+I ++ + + G DD VNKP E++AR+ A+ RR Sbjct: 64 FIRRLRANEFLANIPVIMLTAKGESEDMVKGLAVGADDYVNKPFSPPELMARIRAVLRRC 123 Query: 120 KVSNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + ++ + V L E R+L + M N + ++Q+ Sbjct: 124 QPDSSDEGQQLQSGNLVLDTKSHRVTVDDTRIELGPTEFRLLHFFMKNPERAYNRSQLLD 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G +EE V+ HI +LRK L + + + R +GY Sbjct: 184 YVWGDTVY-IEERTVDVHIRRLRKALESSGHDHLIQTVRGVGYRF 227 >gi|254387142|ref|ZP_05002413.1| response regulator [Streptomyces sp. Mg1] gi|194345958|gb|EDX26924.1| response regulator [Streptomyces sp. Mg1] Length = 223 Score = 151 bits (381), Expect = 7e-35, Method: Composition-based stats. Identities = 52/224 (23%), Positives = 95/224 (42%), Gaps = 8/224 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D D + +G + + D+ ++ L G E Sbjct: 2 LVVEDEESFSDALSYMLRKEGFEVAIAATGPDGLDEFERNGADLVLLDLML--PGLPGTE 59 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +R S VP+I ++ S + + G DD V KP RE++AR+ A+ RR Sbjct: 60 VCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGEP 119 Query: 123 NNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 GP+R+ D V G LP +E +LE L+ N G+ + + Q+ ++ Sbjct: 120 EEVTPAALEAGPVRMDVDRHVVTVGGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRVW 179 Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 G D + ++ H+ +LR K+ + + + R LGY + Sbjct: 180 GA-DYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFE 222 >gi|189218617|ref|YP_001939258.1| DNA-binding response regulator, OmpR family (REC-wHTH domains) [Methylacidiphilum infernorum V4] gi|189185475|gb|ACD82660.1| DNA-binding response regulator, OmpR family (REC-wHTH domains) [Methylacidiphilum infernorum V4] Length = 268 Score = 151 bits (381), Expect = 7e-35, Method: Composition-based stats. Identities = 44/221 (19%), Positives = 94/221 (42%), Gaps = 5/221 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + ++G +++ + + + + D + ++ L G + Sbjct: 49 LVVEDELKIARFISRALEEEGFTVDCCSRGDEALLMMLATPYDAAVLDIMLPGP--DGIS 106 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R +R P++ +S + ++ +SG DD + KP E++AR+ A+ RR Sbjct: 107 VLRSLRERGISLPILLLSARSETRDKIEGLNSGADDYLPKPFSMDELVARLRALIRRTAG 166 Query: 122 SNNRAETGPIRVFS-DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + R+ + L +E ILE LM G+ +TQ+ ++ Sbjct: 167 IGLSVYKVGNLTLNLLTREVFRGQKKIELTAKEFSILELLMRTPGRVFTRTQVCERVW-N 225 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + N+V+ +I KLRKK+ + + R +GY I+ Sbjct: 226 YHFDPGTNLVDVYIQKLRKKIDEGEEQKLIQTVRGVGYKIE 266 >gi|216983|dbj|BAA01502.1| AfsQ1 [Streptomyces coelicolor A3(2)] Length = 225 Score = 151 bits (381), Expect = 7e-35, Method: Composition-based stats. Identities = 49/222 (22%), Positives = 93/222 (41%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D ++ G + S E L R D+ ++ L G Sbjct: 4 LLLIEDDEAIRTALELSLTRQGHRVATAASGEDGLKLLREQRPDLIVLDVML--PGIDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR Q+P+I ++ + +SG DD V KP+ R + AR+ A+ RR + Sbjct: 62 EVCRRIRRTDQLPIILLTARNDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGER 121 Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + + + GE L E R+L L G+ +++ Q+ ++ Sbjct: 122 ESTDSASFGSLVIDRSAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVW-E 180 Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 D + +V++ + +LR K+ + + + R +GY +D Sbjct: 181 HDYLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRLD 222 >gi|319946568|ref|ZP_08020802.1| DNA-binding response regulator [Streptococcus australis ATCC 700641] gi|319746616|gb|EFV98875.1| DNA-binding response regulator [Streptococcus australis ATCC 700641] Length = 233 Score = 151 bits (381), Expect = 8e-35, Method: Composition-based stats. Identities = 49/232 (21%), Positives = 98/232 (42%), Gaps = 13/232 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + + + + D+ ++ L L Sbjct: 4 ILVVDDEKPISDIIKFNMAKEGYEVLTAFDGKEALAVFEAESPDILILDLML--PEIDGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR S VP+I +S + + + G DD V KP +RE+ ARV A+ RR ++ Sbjct: 62 EVARTIRKTSNVPIIVLSAKDTEFDKVIGLEIGADDYVTKPFSNRELQARVKALLRRTEL 121 Query: 122 SNNRAETGPIRVF---------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + D + +G+ L RE +L +L + G+ + + Sbjct: 122 TVESQTESTSDSDIVIGDLKIIPDTFLAQKKGKELELTHREFELLYHLATHVGQVMTREH 181 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223 + ++G +D + V+ I +LR+K+ + + + ++R +GY + N Sbjct: 182 LLETVWG-YDYFGDVRTVDVTIRRLREKIEDIPGRPEYILTRRGVGYYMRNN 232 >gi|88807098|ref|ZP_01122610.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. WH 7805] gi|88788312|gb|EAR19467.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. WH 7805] Length = 248 Score = 151 bits (381), Expect = 8e-35, Method: Composition-based stats. Identities = 44/228 (19%), Positives = 90/228 (39%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++ G ++ D+ ++ Sbjct: 11 ILVVDDEASIRRILETRLSMIGYNVVTACDGTEALTCFQECEPDLVVLDVM--MPKLDGY 68 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + +R S VP++ ++ + + + G DD V KP +E+ AR+ + RR++ Sbjct: 69 GVCQELRKESDVPIVMLTALGDVADRITGLELGADDYVIKPFSPKELEARIRCVLRRVEK 128 Query: 122 SNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N + ++ R E L E +LE L++ G+ ++ +I Sbjct: 129 ENAAGIPNSGMIKVSDLKIDTNKRQVFRADERIRLTGMEFSLLELLVSRSGEPFSRGEIL 188 Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 ++G + V+ VV+ HIS+LR KL + + + + R GY Sbjct: 189 KEVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGYLF 236 >gi|316936256|ref|YP_004111238.1| winged helix family two component transcriptional regulator [Rhodopseudomonas palustris DX-1] gi|315603970|gb|ADU46505.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris DX-1] Length = 237 Score = 151 bits (381), Expect = 8e-35, Method: Composition-based stats. Identities = 50/225 (22%), Positives = 93/225 (41%), Gaps = 8/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G +E + + D+ ++ L G + Sbjct: 5 ILVVEDEEALTTLLRYNLESEGYEVEAVARGDDADTRMKERIPDLVVLDWML--PGLSGI 62 Query: 62 ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IY 116 EL R +RA + P+I ++ + +G DD + KP E+LARV Sbjct: 63 ELCRRLRARPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLLRR 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + G + + D R G L E R+LE+ + + G+ ++ Q+ Sbjct: 123 AAPERLATVLAYGDLELDRDKRRVARSGRPIDLGPTEYRLLEFFLEHPGRVFSREQLLDG 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G D ++E V+ HI +LRK L DP+ + R GY++D Sbjct: 183 VWGR-DIYIDERTVDVHIGRLRKLLNIGREQDPIRTVRGAGYALD 226 >gi|147676785|ref|YP_001211000.1| response regulator [Pelotomaculum thermopropionicum SI] gi|146272882|dbj|BAF58631.1| response regulator [Pelotomaculum thermopropionicum SI] Length = 225 Score = 151 bits (381), Expect = 8e-35, Method: Composition-based stats. Identities = 49/222 (22%), Positives = 95/222 (42%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD + +G ++ E L ++ + D+ ++ + G Sbjct: 5 ILVIDDDRKITAMLRRCLVFEGFEVQTAAGGEEGLRLAAAWKPDLVVLDV--LMPGTDGW 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +RA S +P++ ++ + + D G DD + KP E+LAR+ A+ RR + Sbjct: 63 EVCRRLRAGSSLPILMLTAKDEVADRVKGLDLGADDYLVKPFALEELLARIRALLRRSRQ 122 Query: 122 SNNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++ R+ G L RE +L M + + + + QI ++ Sbjct: 123 ADTAMRPLVYADLTLDHATREVRRGGRPIQLTAREFELLALFMEHPRQVLTRDQIMDRVW 182 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G+ D E NV+E ++ LR+KL + + R +GY + Sbjct: 183 GI-DYGGESNVLEVYVGMLRQKLEEGGEKRIIHTVRGVGYVL 223 >gi|54026938|ref|YP_121180.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] gi|54018446|dbj|BAD59816.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] Length = 228 Score = 151 bits (381), Expect = 8e-35, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 92/224 (41%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V++ +G +++ ++ R D ++ L Sbjct: 3 ILVVDDDRAVRESLRRSLTFNGYTVDLAVDGVDALEKATAQRPDALVLDVM--MPRLDGL 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +R+ P++ ++ S+ + D+G DD + KP E+LAR+ A+ RR Sbjct: 61 EVCRRLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARLRALLRRRA 120 Query: 121 VSNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 R+ L R E +LE LMAN + + +++I Sbjct: 121 PDPGDTSETLRFADLSLDPVTREVSRGDRAISLTRTEFSLLEMLMANPRRVLTRSRILEE 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G +D N +E +I LR+K + + + R +GY + Sbjct: 181 VWG-YDFPTSGNALEVYIGYLRRKTEAEGEPRLIHTVRGVGYVL 223 >gi|291445797|ref|ZP_06585187.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291348744|gb|EFE75648.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 223 Score = 151 bits (381), Expect = 8e-35, Method: Composition-based stats. Identities = 52/224 (23%), Positives = 96/224 (42%), Gaps = 8/224 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D D + +G + + D+ ++ L G E Sbjct: 2 LVVEDEEFFSDALSYMLRKEGFEVAIAATGPDGLDEFERNGADLVLLDLML--PGLPGTE 59 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +R+ S VP+I ++ S + + G DD V KP RE++AR+ A+ RR Sbjct: 60 VCRQLRSRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGEP 119 Query: 123 NNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 GP+R+ D V G LP +E +LE L+ N G+ + + Q+ ++ Sbjct: 120 EEVTPAALEAGPVRMDVDRHVVTVSGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRVW 179 Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 G D + ++ H+ +LR K+ + + + R LGY + Sbjct: 180 GA-DYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFE 222 >gi|239942340|ref|ZP_04694277.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 226 Score = 151 bits (381), Expect = 8e-35, Method: Composition-based stats. Identities = 52/224 (23%), Positives = 96/224 (42%), Gaps = 8/224 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D D + +G + + D+ ++ L G E Sbjct: 5 LVVEDEEFFSDALSYMLRKEGFEVAIAATGPDGLDEFERNGADLVLLDLML--PGLPGTE 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +R+ S VP+I ++ S + + G DD V KP RE++AR+ A+ RR Sbjct: 63 VCRQLRSRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGEP 122 Query: 123 NNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 GP+R+ D V G LP +E +LE L+ N G+ + + Q+ ++ Sbjct: 123 EEVTPAALEAGPVRMDVDRHVVTVSGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRVW 182 Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 G D + ++ H+ +LR K+ + + + R LGY + Sbjct: 183 GA-DYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFE 225 >gi|159036071|ref|YP_001535324.1| two component transcriptional regulator [Salinispora arenicola CNS-205] gi|157914906|gb|ABV96333.1| two component transcriptional regulator, winged helix family [Salinispora arenicola CNS-205] Length = 227 Score = 151 bits (381), Expect = 8e-35, Method: Composition-based stats. Identities = 50/225 (22%), Positives = 92/225 (40%), Gaps = 9/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D D + +G + + D+ ++ L E Sbjct: 5 LVVEDEESFSDALSYMLRKEGFEVSVAATGTSALTEFDRTGADIVLLDLML--PEMSGTE 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +R S VP+I ++ S + + G DD V KP RE++AR+ A+ RR Sbjct: 63 VCRQLRQRSYVPIIMVTARDSEIDKVVGLEIGADDYVTKPYSPRELVARIRAVLRRQSTE 122 Query: 123 NNRAETG-----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 P+R+ + V G LP +E +LE L+ N G+ + + Q+ + Sbjct: 123 AAEPGAPTLAAGPVRMDIERHVVTVNGGPVQLPLKEFELLELLLRNAGRVLTRGQLIDRV 182 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 +G D + ++ H+ +LR KL + + R LGY + Sbjct: 183 WGA-DYVGDTKTLDVHVKRLRSKLEPEPSAPRYIVTVRGLGYKFE 226 >gi|777765|gb|AAB38544.1| srrB [Synechococcus sp.] Length = 237 Score = 151 bits (381), Expect = 8e-35, Method: Composition-based stats. Identities = 41/225 (18%), Positives = 84/225 (37%), Gaps = 8/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + V+ + G +E D+ ++ L Sbjct: 6 ILVVDDDSAVRTLLVRFLSRQGYQVEAAIDGSSALAQFERFSPDLLILDVNL--PDTNGY 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYR 117 +L I++ + V +I ++ L F G DD + KP + AR+ Sbjct: 64 QLCEIVQKRTGVYVILLTSRDDEADILTGFAKGADDYITKPFSLMSVGARIAAILRRQRH 123 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 S +++ R+ G+ L E +L +L + + + + A+ Sbjct: 124 IETASQPALHYEQLQIDPARREVSFAGQPILLTALEFDLLHFLATHPDRVWRRNALIQAV 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221 + +D ++ VV+ HI ++RKKL P+ + R +GY + Sbjct: 184 W-EYDYVGDQRVVDVHIGQIRKKLEVNPELACPIQTVRGVGYKFE 227 >gi|150017114|ref|YP_001309368.1| two component transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149903579|gb|ABR34412.1| two component transcriptional regulator, winged helix family [Clostridium beijerinckii NCIMB 8052] Length = 227 Score = 151 bits (381), Expect = 8e-35, Method: Composition-based stats. Identities = 40/226 (17%), Positives = 88/226 (38%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ ++G ++ ++ L + D+ ++ + Sbjct: 5 ILVVDDDKSIRNLIKVYLENEGYNIMEASNGAEALILINENNFDLIILDVM--MPVLDGI 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115 IR +P+I +S ++ G DD + KP E+ R Sbjct: 63 SACLKIREDYTMPIIFLSAKDEEIHKIEGLTVGADDYITKPFGSMELIARVKAQLRRYKK 122 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + +++ + + D + V+G+ L +E ILE L NRG + +++ Sbjct: 123 FNVEPQNSSSITIEELTINFDTHEVTVRGDKIKLTPKEFDILECLAKNRGVVFSVQKLYE 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 I+ AV + + HI+ LR+K+ + + + +GY I Sbjct: 183 TIWNE-QFAVSDTSIVVHITNLRQKIEIDPKSPKYIKTVWGVGYKI 227 >gi|259502101|ref|ZP_05745003.1| DNA-binding response regulator [Lactobacillus antri DSM 16041] gi|312868802|ref|ZP_07728991.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus oris PB013-T2-3] gi|259169914|gb|EEW54409.1| DNA-binding response regulator [Lactobacillus antri DSM 16041] gi|311095645|gb|EFQ53900.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus oris PB013-T2-3] Length = 235 Score = 151 bits (381), Expect = 8e-35, Method: Composition-based stats. Identities = 49/228 (21%), Positives = 96/228 (42%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + E + D+ ++ L L Sbjct: 5 ILVVDDEKPISDIIKFNLEKEGYEVVVAFDGEEALEKVEAEDPDLIILDLML--PKVDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118 E+ + +RA P+I ++ S + + G DD V KP +RE++ARV A RR Sbjct: 63 EVAKRVRAKHTTPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRREAT 122 Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + N + G I + + +GE L RE +L YL + G+ + + + Sbjct: 123 AQAPAEEDKNTDIKVGDITIHPEAYTVTKRGENINLTHREFELLHYLAQHIGQVINREHL 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++G +D + V+ + +LR+K+ + + ++R +GY + Sbjct: 183 LQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSQPQWLITRRGVGYYL 229 >gi|224827129|ref|ZP_03700225.1| two component transcriptional regulator, winged helix family [Lutiella nitroferrum 2002] gi|224600638|gb|EEG06825.1| two component transcriptional regulator, winged helix family [Lutiella nitroferrum 2002] Length = 228 Score = 151 bits (381), Expect = 8e-35, Method: Composition-based stats. Identities = 50/220 (22%), Positives = 88/220 (40%), Gaps = 4/220 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + G D+ ++ L G L+ Sbjct: 11 LVVEDEPKLSRLLADYLAAAGFETACLADGLAVVPEVRRRLPDLILLDLML--PGRDGLD 68 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +RA S VP++ ++ L + G DD + KP RE++ARV AI RR + Sbjct: 69 ICRELRAFSDVPIVMVTARVEEIDRLLGLELGADDYICKPYSPREVVARVKAILRRSQRH 128 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 + + +G QG L E R+L L + G+ ++ Q+ +Y Sbjct: 129 GALPADAGLTIDEEGYQASWQGRRLELTPAEFRLLRTLASAPGRVFSRDQLLDHLY-ADH 187 Query: 183 EAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 V + V+SHI LR+KL + + S +GY ++ Sbjct: 188 RVVTDRTVDSHIKNLRRKLEQAAPQQEMIRSVYGVGYKLE 227 >gi|254831885|ref|ZP_05236540.1| hypothetical protein Lmon1_11050 [Listeria monocytogenes 10403S] Length = 237 Score = 151 bits (381), Expect = 8e-35, Method: Composition-based stats. Identities = 44/229 (19%), Positives = 92/229 (40%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + + L + D+ ++ L G + Sbjct: 6 ILVVDDEKTIADIVKFNLNKEGFDVYCAYDGDEALELVEEVQPDLILLDIML--PGRDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112 E+ R +R +P+I ++ S + + G DD V KP +RE Sbjct: 64 EVCREVRKKYDMPIIMVTAKDSEIDKVIGLELGADDYVTKPFSNRELIARVKANLRRHSQ 123 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + N+ E G + + D +GE L RE +L YL + G+ + + Sbjct: 124 VSSSTAEEEENSELEIGSLIIHPDAYVASKRGETIELTHREFELLHYLAKHMGQVMTREH 183 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + ++G +D + V+ + +LR+K+ + + ++R +GY + Sbjct: 184 LLQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPAWLVTRRGVGYYL 231 >gi|148379930|ref|YP_001254471.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 3502] gi|153931088|ref|YP_001384228.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|153937795|ref|YP_001387768.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|148289414|emb|CAL83510.1| two-component response regulator [Clostridium botulinum A str. ATCC 3502] gi|152927132|gb|ABS32632.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|152933709|gb|ABS39208.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] Length = 221 Score = 151 bits (381), Expect = 8e-35, Method: Composition-based stats. Identities = 46/224 (20%), Positives = 95/224 (42%), Gaps = 10/224 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + + G +E + D+ ++ L Sbjct: 5 ILVVEDDFDIHTIISEVLKESGYLVEVATDGLIAVEMFRRGNFDLIILDVML--PKIDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 + IIR S +P+I ++ + + F+ VDD + KP ++ RV Sbjct: 63 VVCEIIRKESSMPIIMLTALGEEEDEMKGFELKVDDYITKPFSINLLIKRVEAVLRRANG 122 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 L+ +N+ I ++ V + L +E +ILE L++N G+ ++ + + I+ Sbjct: 123 LEENNSTLTFEEITIYPSNYKTLVNNKEIELTYKEFQILEILISNVGRVFSRESLLNQIW 182 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 G +D + V+++HI LR+KL D + + R +GY I+ Sbjct: 183 G-YDYFGDTRVIDTHIKNLRQKL----NIDYIKTIRGVGYKIEK 221 >gi|126652912|ref|ZP_01725055.1| hypothetical protein BB14905_20830 [Bacillus sp. B14905] gi|126590332|gb|EAZ84453.1| hypothetical protein BB14905_20830 [Bacillus sp. B14905] Length = 229 Score = 151 bits (381), Expect = 8e-35, Method: Composition-based stats. Identities = 45/226 (19%), Positives = 91/226 (40%), Gaps = 7/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + +G ++ + D+ ++ L + Sbjct: 5 ILIIEDEENIARVLQLELQFEGYEAVMAHTGADGLLQYREQQWDLILLDIML--PEMSGI 62 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYR 117 ++ + IRA SQ P+I ++ ++ + D G +D V KP E + + Sbjct: 63 DVLKRIRATESQTPVIMLTAKSEVEDKVKGLDLGANDYVTKPFEIEELLARIRNALRFSQ 122 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + G + + R+ G+ L RE +L YLM + + + + QI + Sbjct: 123 KASPTKVGVSFGQLSINEQTREVIYYGKEIQLTPREYDLLLYLMKHPKQVLTREQILETV 182 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 +G FD + NVV+ +I +R+KL + + R +GY + N Sbjct: 183 WG-FDYYGDTNVVDVYIRYVRQKLEIANVTPIIQTVRGVGYVLKEN 227 >gi|120401846|ref|YP_951675.1| two component transcriptional regulator [Mycobacterium vanbaalenii PYR-1] gi|119954664|gb|ABM11669.1| two component transcriptional regulator, winged helix family [Mycobacterium vanbaalenii PYR-1] Length = 228 Score = 151 bits (381), Expect = 8e-35, Method: Composition-based stats. Identities = 52/226 (23%), Positives = 101/226 (44%), Gaps = 10/226 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + D L +G A D+ ++ L G + Sbjct: 5 LIVEDEESLADPLAFLLRKEGFEATVVADGPSALAEFERAGADIVLLDLML--PGMSGTD 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + +R+ S VP+I ++ S + + G DD V KP RE++AR+ A+ RR + Sbjct: 63 VCKQLRSRSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGSDA 122 Query: 123 NNRAETG------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 ++ P+R+ + V G+ LP +E +LEYLM N G+ + + Q+ Sbjct: 123 DDAGIGDGVLEAGPVRMDVERHVVSVNGQSITLPLKEFDLLEYLMRNSGRVLTRGQLIDR 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 ++G D + ++ H+ +LR K+ + + + R LGY ++ Sbjct: 183 VWGA-DYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVRGLGYKLE 227 >gi|154244160|ref|YP_001415118.1| two component transcriptional regulator [Xanthobacter autotrophicus Py2] gi|154158245|gb|ABS65461.1| two component transcriptional regulator, winged helix family [Xanthobacter autotrophicus Py2] Length = 233 Score = 151 bits (381), Expect = 8e-35, Method: Composition-based stats. Identities = 51/226 (22%), Positives = 94/226 (41%), Gaps = 8/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G +E + E + D+ ++ L G + Sbjct: 5 ILIVEDEEPLTLLLRYNLESEGYGVESVGRGDEAETRLRESVPDLVILDWML--PGLSGI 62 Query: 62 ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IY 116 EL R +R + P+I ++ + +G DD V KP E+LARV A Sbjct: 63 ELCRRLRTRPETERLPVIMLTARGEETERVRGLATGADDYVVKPFSVPELLARVRALLRR 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + G I + + G L E R+LE+LM + G+ ++ Q+ Sbjct: 123 AKPEHVATLLRAGDIELDRETHRVHRAGREVHLGPTEFRLLEFLMQSPGRVFSREQLLDG 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 ++G D ++E V+ H+ +LRK + DP+ + R GYS + Sbjct: 183 VWGQ-DVYIDERTVDVHVGRLRKAINRGRQSDPIRTVRGAGYSFNE 227 >gi|29375768|ref|NP_814922.1| DNA-binding response regulator VicR [Enterococcus faecalis V583] gi|227518447|ref|ZP_03948496.1| DNA-binding response regulator [Enterococcus faecalis TX0104] gi|227552977|ref|ZP_03983026.1| DNA-binding response regulator [Enterococcus faecalis HH22] gi|229546129|ref|ZP_04434854.1| DNA-binding response regulator protein [Enterococcus faecalis TX1322] gi|229550318|ref|ZP_04439043.1| DNA-binding response regulator [Enterococcus faecalis ATCC 29200] gi|255973090|ref|ZP_05423676.1| DNA-binding response regulator [Enterococcus faecalis T1] gi|255976129|ref|ZP_05426715.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis T2] gi|256618776|ref|ZP_05475622.1| transcriptional regulatory protein [Enterococcus faecalis ATCC 4200] gi|256762196|ref|ZP_05502776.1| DNA-binding response regulator [Enterococcus faecalis T3] gi|256852841|ref|ZP_05558211.1| VicR protein [Enterococcus faecalis T8] gi|256958685|ref|ZP_05562856.1| transcriptional regulatory protein [Enterococcus faecalis DS5] gi|256962217|ref|ZP_05566388.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis Merz96] gi|256965407|ref|ZP_05569578.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis HIP11704] gi|257077961|ref|ZP_05572322.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis JH1] gi|257082850|ref|ZP_05577211.1| DNA-binding response regulator VicR [Enterococcus faecalis E1Sol] gi|257085548|ref|ZP_05579909.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis Fly1] gi|257086546|ref|ZP_05580907.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis D6] gi|257089603|ref|ZP_05583964.1| two component system response regulator vicR [Enterococcus faecalis CH188] gi|257415810|ref|ZP_05592804.1| transcriptional regulatory protein [Enterococcus faecalis AR01/DG] gi|257419019|ref|ZP_05596013.1| DNA-binding response regulator [Enterococcus faecalis T11] gi|257422896|ref|ZP_05599886.1| two component system response regulator vicR [Enterococcus faecalis X98] gi|293383244|ref|ZP_06629160.1| DNA-binding response regulator VicR [Enterococcus faecalis R712] gi|293387601|ref|ZP_06632147.1| DNA-binding response regulator VicR [Enterococcus faecalis S613] gi|294781108|ref|ZP_06746458.1| response regulator receiver domain protein [Enterococcus faecalis PC1.1] gi|300860056|ref|ZP_07106144.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecalis TUSoD Ef11] gi|307268695|ref|ZP_07550064.1| response regulator receiver domain protein [Enterococcus faecalis TX4248] gi|307273520|ref|ZP_07554763.1| response regulator receiver domain protein [Enterococcus faecalis TX0855] gi|307274483|ref|ZP_07555666.1| response regulator receiver domain protein [Enterococcus faecalis TX2134] gi|307279011|ref|ZP_07560069.1| response regulator receiver domain protein [Enterococcus faecalis TX0860] gi|307288506|ref|ZP_07568492.1| response regulator receiver domain protein [Enterococcus faecalis TX0109] gi|307291176|ref|ZP_07571061.1| response regulator receiver domain protein [Enterococcus faecalis TX0411] gi|312899664|ref|ZP_07758988.1| response regulator receiver domain protein [Enterococcus faecalis TX0470] gi|312903943|ref|ZP_07763112.1| response regulator receiver domain protein [Enterococcus faecalis TX0635] gi|312907168|ref|ZP_07766159.1| response regulator receiver domain protein [Enterococcus faecalis DAPTO 512] gi|312909787|ref|ZP_07768635.1| response regulator receiver domain protein [Enterococcus faecalis DAPTO 516] gi|312951046|ref|ZP_07769954.1| response regulator receiver domain protein [Enterococcus faecalis TX0102] gi|29343229|gb|AAO80992.1| DNA-binding response regulator VicR [Enterococcus faecalis V583] gi|227074125|gb|EEI12088.1| DNA-binding response regulator [Enterococcus faecalis TX0104] gi|227177886|gb|EEI58858.1| DNA-binding response regulator [Enterococcus faecalis HH22] gi|229304581|gb|EEN70577.1| DNA-binding response regulator [Enterococcus faecalis ATCC 29200] gi|229308653|gb|EEN74640.1| DNA-binding response regulator protein [Enterococcus faecalis TX1322] gi|255964108|gb|EET96584.1| DNA-binding response regulator [Enterococcus faecalis T1] gi|255969001|gb|EET99623.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis T2] gi|256598303|gb|EEU17479.1| transcriptional regulatory protein [Enterococcus faecalis ATCC 4200] gi|256683447|gb|EEU23142.1| DNA-binding response regulator [Enterococcus faecalis T3] gi|256711300|gb|EEU26338.1| VicR protein [Enterococcus faecalis T8] gi|256949181|gb|EEU65813.1| transcriptional regulatory protein [Enterococcus faecalis DS5] gi|256952713|gb|EEU69345.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis Merz96] gi|256955903|gb|EEU72535.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis HIP11704] gi|256985991|gb|EEU73293.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis JH1] gi|256990880|gb|EEU78182.1| DNA-binding response regulator VicR [Enterococcus faecalis E1Sol] gi|256993578|gb|EEU80880.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis Fly1] gi|256994576|gb|EEU81878.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis D6] gi|256998415|gb|EEU84935.1| two component system response regulator vicR [Enterococcus faecalis CH188] gi|257157638|gb|EEU87598.1| transcriptional regulatory protein [Enterococcus faecalis ARO1/DG] gi|257160847|gb|EEU90807.1| DNA-binding response regulator [Enterococcus faecalis T11] gi|257164720|gb|EEU94680.1| two component system response regulator vicR [Enterococcus faecalis X98] gi|291079422|gb|EFE16786.1| DNA-binding response regulator VicR [Enterococcus faecalis R712] gi|291082933|gb|EFE19896.1| DNA-binding response regulator VicR [Enterococcus faecalis S613] gi|294451786|gb|EFG20238.1| response regulator receiver domain protein [Enterococcus faecalis PC1.1] gi|300850874|gb|EFK78623.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecalis TUSoD Ef11] gi|306497830|gb|EFM67362.1| response regulator receiver domain protein [Enterococcus faecalis TX0411] gi|306500581|gb|EFM69912.1| response regulator receiver domain protein [Enterococcus faecalis TX0109] gi|306504136|gb|EFM73348.1| response regulator receiver domain protein [Enterococcus faecalis TX0860] gi|306508877|gb|EFM77964.1| response regulator receiver domain protein [Enterococcus faecalis TX2134] gi|306509797|gb|EFM78824.1| response regulator receiver domain protein [Enterococcus faecalis TX0855] gi|306515007|gb|EFM83553.1| response regulator receiver domain protein [Enterococcus faecalis TX4248] gi|310626196|gb|EFQ09479.1| response regulator receiver domain protein [Enterococcus faecalis DAPTO 512] gi|310631001|gb|EFQ14284.1| response regulator receiver domain protein [Enterococcus faecalis TX0102] gi|310632663|gb|EFQ15946.1| response regulator receiver domain protein [Enterococcus faecalis TX0635] gi|311289745|gb|EFQ68301.1| response regulator receiver domain protein [Enterococcus faecalis DAPTO 516] gi|311293170|gb|EFQ71726.1| response regulator receiver domain protein [Enterococcus faecalis TX0470] gi|315027746|gb|EFT39678.1| response regulator receiver domain protein [Enterococcus faecalis TX2137] gi|315029162|gb|EFT41094.1| response regulator receiver domain protein [Enterococcus faecalis TX4000] gi|315031521|gb|EFT43453.1| response regulator receiver domain protein [Enterococcus faecalis TX0017] gi|315035063|gb|EFT46995.1| response regulator receiver domain protein [Enterococcus faecalis TX0027] gi|315145504|gb|EFT89520.1| response regulator receiver domain protein [Enterococcus faecalis TX2141] gi|315147675|gb|EFT91691.1| response regulator receiver domain protein [Enterococcus faecalis TX4244] gi|315151377|gb|EFT95393.1| response regulator receiver domain protein [Enterococcus faecalis TX0012] gi|315154083|gb|EFT98099.1| response regulator receiver domain protein [Enterococcus faecalis TX0031] gi|315157370|gb|EFU01387.1| response regulator receiver domain protein [Enterococcus faecalis TX0043] gi|315162567|gb|EFU06584.1| response regulator receiver domain protein [Enterococcus faecalis TX0645] gi|315165410|gb|EFU09427.1| response regulator receiver domain protein [Enterococcus faecalis TX1302] gi|315166596|gb|EFU10613.1| response regulator receiver domain protein [Enterococcus faecalis TX1341] gi|315169875|gb|EFU13892.1| response regulator receiver domain protein [Enterococcus faecalis TX1342] gi|315172774|gb|EFU16791.1| response regulator receiver domain protein [Enterococcus faecalis TX1346] gi|315575748|gb|EFU87939.1| response regulator receiver domain protein [Enterococcus faecalis TX0309B] gi|315578292|gb|EFU90483.1| response regulator receiver domain protein [Enterococcus faecalis TX0630] gi|315579808|gb|EFU91999.1| response regulator receiver domain protein [Enterococcus faecalis TX0309A] gi|323480426|gb|ADX79865.1| response regulator [Enterococcus faecalis 62] gi|327534818|gb|AEA93652.1| response regulator [Enterococcus faecalis OG1RF] Length = 234 Score = 151 bits (381), Expect = 8e-35, Method: Composition-based stats. Identities = 48/228 (21%), Positives = 93/228 (40%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + +G + E D+ ++ L L Sbjct: 4 ILVVDDEKPISEIVKYNLVKEGYEVFTAYDGEEALEKVEEVEPDLIILDLML--PKMDGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R +P+I ++ S + + G DD V KP +RE++ARV A RR Sbjct: 62 EVAREVRKTHDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRGAT 121 Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + AE + D +GE L RE +L YL + G+ + + + Sbjct: 122 NAKEAEVTTQSELTIGDLTIHPDAYMVSKRGEKIELTHREFELLYYLAKHIGQVMTREHL 181 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++G +D + V+ + +LR+K+ + + ++R +GY + Sbjct: 182 LQTVWG-YDYFGDVRTVDVTVRRLREKIEDSPSHPTYLVTRRGVGYYL 228 >gi|299134022|ref|ZP_07027215.1| two component transcriptional regulator, winged helix family [Afipia sp. 1NLS2] gi|298590769|gb|EFI50971.1| two component transcriptional regulator, winged helix family [Afipia sp. 1NLS2] Length = 234 Score = 151 bits (381), Expect = 8e-35, Method: Composition-based stats. Identities = 51/225 (22%), Positives = 94/225 (41%), Gaps = 8/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G +E + + D+ ++ L G + Sbjct: 5 ILVVEDEEALSTLLRYNLDAEGYDVETVARGDDADTRLKERVPDLVVLDWML--PGLSGI 62 Query: 62 ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IY 116 EL R +RA + P+I ++ + +G DD + KP E+LARV Sbjct: 63 ELCRRLRARPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLLRR 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + N G I + + R G L E R+LE+ + + G+ ++ Q+ Sbjct: 123 ASPERLANVLVYGDIELDREKRRVARSGRPIDLGPTEYRLLEFFLQHPGRVFSREQLLDG 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G D ++E V+ HI +LRK L DP+ + R GY++D Sbjct: 183 VWGR-DIYIDERTVDVHIGRLRKLLNPGEEQDPIRTVRGAGYALD 226 >gi|260577819|ref|ZP_05845753.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC 43734] gi|258604046|gb|EEW17289.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC 43734] Length = 234 Score = 151 bits (381), Expect = 8e-35, Method: Composition-based stats. Identities = 46/227 (20%), Positives = 94/227 (41%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V++ +G ++ E L + R D++ ++ + L Sbjct: 6 ILVVDDDQAVRESLRRSLIFNGYTVILATDGEEALKLIAEERPDLAILDVM--MPKKDGL 63 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARVA 113 ++ R +R+H P++ ++ S++ + D+G DD + KP R + R A Sbjct: 64 DVCRELRSHGDDLPILLLTARDSVEERVAGLDAGADDYLPKPFALEELLARTRSLFRRAA 123 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + + + + RD L R E +LE LM N K +++ I Sbjct: 124 RPAIQEGETREPLRFEDLTLNPETRDVFRGDRQISLTRTEFALLELLMNNPRKVLSRNTI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G +D N +E +I LR+K + + R +GY++ Sbjct: 184 LEEVWG-YDFPTSGNALEVYIGYLRRKTEANNETRLIHTVRGVGYAL 229 >gi|229825839|ref|ZP_04451908.1| hypothetical protein GCWU000182_01202 [Abiotrophia defectiva ATCC 49176] gi|229789859|gb|EEP25973.1| hypothetical protein GCWU000182_01202 [Abiotrophia defectiva ATCC 49176] Length = 232 Score = 151 bits (381), Expect = 8e-35, Method: Composition-based stats. Identities = 48/229 (20%), Positives = 83/229 (36%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD A + A +G + E L ++ Sbjct: 4 ILIADDNADITKVLAAYTSKEGYNPVIATDGEEALKLFDEVSPSAVLLDVM--MPKMDGY 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL--------ARVA 113 E+ R IRA S VP+I ++ + D G DD + KP E++ VA Sbjct: 62 EVCRKIRAKSNVPIILVTARGEGFEKIMGLDIGADDYIVKPFSPSEVMARLRAVLRRMVA 121 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + N + + + D + GE L ++E + L N K + + Sbjct: 122 PESSANVANENFIKIDNLEINLDEYSLSIGGEKIALTKKEIETMWTLAENPNKVFTRDNL 181 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221 +++G FD + V+SHI +LR KL + + + +GY D Sbjct: 182 LDSLWG-FDYFGDSRTVDSHIKRLRAKLDTVEHPNWCIKTIWGVGYKFD 229 >gi|159899580|ref|YP_001545827.1| two component transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159892619|gb|ABX05699.1| two component transcriptional regulator, winged helix family [Herpetosiphon aurantiacus ATCC 23779] Length = 227 Score = 151 bits (381), Expect = 8e-35, Method: Composition-based stats. Identities = 43/224 (19%), Positives = 88/224 (39%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + G G S + + + + D+ ++ L Sbjct: 5 ILIVEDERKIAVGLQNYLEGVGYSTITASDGQAGLDMARREQPDLVLLDLMLPM--VDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R +RA S VP+I ++ +L + G DD + KP R+++AR+ A+ RR+ Sbjct: 63 TVCRTLRAESSVPIIMLTARVEEVDSLAGLELGADDYITKPFSPRQVVARIKAVLRRVNG 122 Query: 122 SNNRAETGPI----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 Q + L E +L L+ + G+ + ++Q+ A+ Sbjct: 123 ELEPPMIVRKSGIEIDLQRRTVVIEQNPITSLTPTEFDLLVTLVRSAGRPLTRSQLLDAV 182 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 G EA + V++HI +R+K+ + + +GY Sbjct: 183 QGEEGEAYD-RTVDAHIKNVRRKIEPNPSVPRYILTVFGVGYKF 225 >gi|15903150|ref|NP_358700.1| DNA-binding response regulator [Streptococcus pneumoniae R6] gi|182684045|ref|YP_001835792.1| DNA-binding response regulator [Streptococcus pneumoniae CGSP14] gi|15458732|gb|AAK99910.1| Response regulator [Streptococcus pneumoniae R6] gi|182629379|gb|ACB90327.1| DNA-binding response regulator [Streptococcus pneumoniae CGSP14] Length = 251 Score = 151 bits (381), Expect = 8e-35, Method: Composition-based stats. Identities = 43/233 (18%), Positives = 94/233 (40%), Gaps = 14/233 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + + + + D+ ++ L L Sbjct: 21 ILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILDLML--PEIDGL 78 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL----------AR 111 E+ + IR S VP++ +S S + + G DD V KP +RE+ Sbjct: 79 EVAKTIRKTSSVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRSQP 138 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + + + G + + D + GE L RE +L +L ++ G+ + + Sbjct: 139 MPVDGQEADSKPQPIQIGDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHTGQVITRE 198 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223 + ++G +D + V+ + +LR+K+ + + + ++R +GY + N Sbjct: 199 HLLETVWG-YDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYMRNN 250 >gi|323491596|ref|ZP_08096775.1| DNA-binding response regulator PhoB [Vibrio brasiliensis LMG 20546] gi|323314172|gb|EGA67257.1| DNA-binding response regulator PhoB [Vibrio brasiliensis LMG 20546] Length = 229 Score = 151 bits (381), Expect = 8e-35, Method: Composition-based stats. Identities = 37/222 (16%), Positives = 93/222 (41%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D A +++ + G + S D+ ++ L G G Sbjct: 5 ILVVEDEAPIREMLCFVLEQKGYQTVEAEDYDTAVTKLSEPFPDLVLLDWMLPGGSGINF 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ + +P++ ++ + + + G DD + KP +E++AR+ A+ RR+ Sbjct: 65 IKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIRRVT 124 Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + + +++ + + E ++L + M ++ + ++ Q+ + ++ Sbjct: 125 PTALEDVIDVQGLKLDPVSHRVMANDDALDMGPTEFKMLHFFMTHQERVYSREQLLNNVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G + VE+ V+ HI +LRK L + + R GY Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALETAGHDKLIQTVRGAGYRF 225 >gi|188584441|ref|YP_001927886.1| transcriptional regulator [Methylobacterium populi BJ001] gi|179347939|gb|ACB83351.1| two component transcriptional regulator, winged helix family [Methylobacterium populi BJ001] Length = 234 Score = 151 bits (381), Expect = 8e-35, Method: Composition-based stats. Identities = 53/226 (23%), Positives = 94/226 (41%), Gaps = 8/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G ++ E + D+ ++ + G + Sbjct: 6 ILIVEDEESLTTLLRYNLEAEGFLVDVAIRGEEADLRLHETTPDLVLLDWMV--PGLSGI 63 Query: 62 ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IY 116 EL R IRA + P+I ++ + +G DD V KP E+LARV A Sbjct: 64 ELCRRIRARRETERLPVIMLTARGEEADRVRGLSTGADDYVVKPFSVPELLARVRALLRR 123 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + G I + QG L E ++LEYLM + G+ ++ Q+ Sbjct: 124 AKPAHVADLLVAGDIELDRVSHRIRRQGREIHLGPTEFKLLEYLMQSPGRVFSREQLLDG 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 ++G D ++E V+ H+ +LRK + DP+ + R GYS D Sbjct: 184 VWG-HDVYIDERTVDVHVGRLRKAINRPRQSDPIRTVRGSGYSFDE 228 >gi|152967563|ref|YP_001363347.1| two component transcriptional regulator, winged helix family [Kineococcus radiotolerans SRS30216] gi|151362080|gb|ABS05083.1| two component transcriptional regulator, winged helix family [Kineococcus radiotolerans SRS30216] Length = 239 Score = 151 bits (381), Expect = 8e-35, Method: Composition-based stats. Identities = 50/224 (22%), Positives = 91/224 (40%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ G + L R D+ ++ L Sbjct: 12 LLVVDDEPSIRELLATSLRFAGFEVASAGDGAEALKLAEDFRPDLVVLDVML--PDVDGF 69 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R +R + VP++ ++ + G DD V KP E++AR+ A+ RR Sbjct: 70 TVTRKLRERGRAVPVLFLTARDDTADKVAGLTVGGDDYVTKPFSLEEVVARIRAVLRRTG 129 Query: 121 VSNNRAETGPIRVF----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + D + G L E ++L YLM N + ++K QI Sbjct: 130 GVDGPDTGRLVFHDLELEEDSHEVRRAGREVELSPTEFKLLRYLMLNPNRVLSKAQILDH 189 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +D E +VES+IS LR+KL + + +KR +GY + Sbjct: 190 VWD-YDFNGEAGIVESYISYLRRKLDTEGLEPLIHTKRGVGYVL 232 >gi|125718372|ref|YP_001035505.1| two-component response transcriptional regulator [Streptococcus sanguinis SK36] gi|323351211|ref|ZP_08086867.1| DNA-binding response regulator [Streptococcus sanguinis VMC66] gi|125498289|gb|ABN44955.1| Two-component response transcriptional regulator (CheY-like receiver and winged-helix DNA-binding domains), putative [Streptococcus sanguinis SK36] gi|322122435|gb|EFX94146.1| DNA-binding response regulator [Streptococcus sanguinis VMC66] gi|324991492|gb|EGC23425.1| DNA-binding response regulator [Streptococcus sanguinis SK353] gi|324993852|gb|EGC25771.1| DNA-binding response regulator [Streptococcus sanguinis SK405] gi|324994827|gb|EGC26740.1| DNA-binding response regulator [Streptococcus sanguinis SK678] gi|325687268|gb|EGD29290.1| DNA-binding response regulator [Streptococcus sanguinis SK72] gi|325690802|gb|EGD32803.1| DNA-binding response regulator [Streptococcus sanguinis SK115] gi|325694846|gb|EGD36751.1| DNA-binding response regulator [Streptococcus sanguinis SK150] gi|325696129|gb|EGD38020.1| DNA-binding response regulator [Streptococcus sanguinis SK160] gi|327461010|gb|EGF07343.1| DNA-binding response regulator [Streptococcus sanguinis SK1057] gi|327463116|gb|EGF09437.1| DNA-binding response regulator [Streptococcus sanguinis SK1] gi|327470647|gb|EGF16103.1| DNA-binding response regulator [Streptococcus sanguinis SK330] gi|327474727|gb|EGF20132.1| DNA-binding response regulator [Streptococcus sanguinis SK408] gi|327490284|gb|EGF22072.1| DNA-binding response regulator [Streptococcus sanguinis SK1058] gi|328946751|gb|EGG40889.1| DNA-binding response regulator [Streptococcus sanguinis SK1087] gi|332358683|gb|EGJ36506.1| DNA-binding response regulator [Streptococcus sanguinis SK355] gi|332358954|gb|EGJ36775.1| DNA-binding response regulator [Streptococcus sanguinis SK49] gi|332362447|gb|EGJ40247.1| DNA-binding response regulator [Streptococcus sanguinis SK1056] gi|332367141|gb|EGJ44877.1| DNA-binding response regulator [Streptococcus sanguinis SK1059] Length = 233 Score = 151 bits (381), Expect = 8e-35, Method: Composition-based stats. Identities = 49/232 (21%), Positives = 98/232 (42%), Gaps = 13/232 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + + + + + D+ ++ L L Sbjct: 4 ILVVDDEKPISDIIKFNMAKEGYEVLTAFDGKEALEMFEAEQPDILILDLML--PEVDGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-------- 113 E+ R IR S VP+I +S S + + G DD V KP +RE+ ARV Sbjct: 62 EVARTIRKTSNVPIIVLSAKDSEFDKVIGLEIGADDYVTKPFSNRELQARVKALLRRADL 121 Query: 114 -AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + N G +++ D + G+ L RE +L +L + G+ + + Sbjct: 122 VVENQVEESGPNELTIGELQILPDAFVAKKHGKELELTHREFELLHHLATHIGQVMTREH 181 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223 + ++G +D + V+ I +LR+K+ + + + ++R +GY + N Sbjct: 182 LLETVWG-YDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 232 >gi|257865288|ref|ZP_05644941.1| transcriptional regulator [Enterococcus casseliflavus EC30] gi|257871616|ref|ZP_05651269.1| transcriptional regulator [Enterococcus casseliflavus EC10] gi|257874888|ref|ZP_05654541.1| transcriptional regulator [Enterococcus casseliflavus EC20] gi|325571477|ref|ZP_08146977.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC 12755] gi|257799222|gb|EEV28274.1| transcriptional regulator [Enterococcus casseliflavus EC30] gi|257805780|gb|EEV34602.1| transcriptional regulator [Enterococcus casseliflavus EC10] gi|257809054|gb|EEV37874.1| transcriptional regulator [Enterococcus casseliflavus EC20] gi|325155953|gb|EGC68149.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC 12755] Length = 237 Score = 151 bits (381), Expect = 8e-35, Method: Composition-based stats. Identities = 46/228 (20%), Positives = 93/228 (40%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + E + D+ ++ L L Sbjct: 7 ILVVDDEKPISDIVKFNLTKEGYEVYTAYDGEEALEKVAEVDPDLILLDLML--PKMDGL 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R +P+I ++ S + + G DD V KP +RE++ARV A RR Sbjct: 65 EVAREVRKTHDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRGSA 124 Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + A+ + D G L RE ++ YL + G+ + + + Sbjct: 125 AAKEADDNANSELTIGDLTIHPDAYMVTKNGAAIELTHREFELMHYLAKHLGQVMTREHL 184 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++G +D + V+ + +LR+K+ + + + ++R +GY + Sbjct: 185 LQTVWG-YDYFGDVRTVDVTVRRLREKIEDSPSHPNYLVTRRGVGYYL 231 >gi|251796137|ref|YP_003010868.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247543763|gb|ACT00782.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 224 Score = 151 bits (381), Expect = 8e-35, Method: Composition-based stats. Identities = 46/222 (20%), Positives = 98/222 (44%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ +G + + + SA+ D+ ++ Sbjct: 4 ILVVDDDLHIRELISHYLKVEGFEVLEASDGVEALTILDSAKADLVIMDVM--MPNMDGW 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL IR H +P + ++ L F+ G DD + KP E++ARV A+ +R ++ Sbjct: 62 ELCAEIRDHYDLPRLMLTAKGETAQKLKGFELGADDYLVKPFEPLELIARVKALLKRYRI 121 Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 ++++ + +V G+ LP +E +L L + G+ ++ Q+ I+G Sbjct: 122 ASSQTVQAGDLILDRKTYVVQVNGQSMTLPLKEFELLFKLASYPGQSFSRGQLIEEIWG- 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D E ++ HI++LR++ + + R LGY ++ Sbjct: 181 YDFEGNERTLDVHINRLRERFPESQHTFRISTIRGLGYRLEV 222 >gi|89896385|ref|YP_519872.1| hypothetical protein DSY3639 [Desulfitobacterium hafniense Y51] gi|89335833|dbj|BAE85428.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 225 Score = 151 bits (381), Expect = 8e-35, Method: Composition-based stats. Identities = 43/223 (19%), Positives = 91/223 (40%), Gaps = 5/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ L + G S A ++ I+ Sbjct: 4 IMIVDDDPTIRELVCTLLKEGGFDTCEARDGREALEKISEANPSLAVIDLM--MPNMDGY 61 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL R +R + + P++ ++ + F++G DD + KP E+L RV A+ RR + Sbjct: 62 ELCRQLRQYYKDLPVLMLTAKHEKPAKVKGFEAGTDDYLTKPFDGDELLLRVKALLRRYR 121 Query: 121 VSNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + ++ + + G +P +E +L L G+ + Q+ ++G Sbjct: 122 IEASQTIQIGYVTLDKNSYSVILNGVGEDIPMKEFELLFKLGGFPGRTFTRDQLLEGVWG 181 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D E ++ HI +LR++ + + + R LGY ++ Sbjct: 182 -YDFDGNERTLDVHIGRLRERFPAEKSGFKITTVRGLGYRLEV 223 >gi|330467983|ref|YP_004405726.1| winged helix family two component transcriptional regulator [Verrucosispora maris AB-18-032] gi|328810954|gb|AEB45126.1| two component transcriptional regulator, winged helix family protein [Verrucosispora maris AB-18-032] Length = 259 Score = 151 bits (381), Expect = 8e-35, Method: Composition-based stats. Identities = 37/221 (16%), Positives = 81/221 (36%), Gaps = 6/221 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D A +++ G ++ + D+ ++ L G L+ Sbjct: 39 LVVEDDASIREVTALGLRRAGFRVDTAADGRQGLAAWRAGSVDLIVLDVLL--PGLDGLQ 96 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRLK 120 + R IR + VP++ ++ + + G DD + KP E++ARV + Sbjct: 97 VCREIRRSNAVPILMLTARTDTIDVVVGLECGADDYLRKPFDLPELVARVRSLLRRAVAA 156 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 G + + G PL E R+L L G+ + + ++ Sbjct: 157 PEPGPLRIGRLEIDPGAFVARRDGHELPLTATEFRLLLELARRPGQVFTRELLLERVW-E 215 Query: 181 FDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 + +V+ + +LR K+ + + + R GY + Sbjct: 216 QGYLGDSRLVDVAVQRLRAKVEDDPASPRLIRTVRGAGYKL 256 >gi|326804031|ref|YP_004321849.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Aerococcus urinae ACS-120-V-Col10a] gi|326650605|gb|AEA00788.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Aerococcus urinae ACS-120-V-Col10a] Length = 235 Score = 151 bits (381), Expect = 8e-35, Method: Composition-based stats. Identities = 48/232 (20%), Positives = 93/232 (40%), Gaps = 13/232 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G E +S + D+ ++ L + L Sbjct: 4 ILVVDDEKPISDIITFNLQKEGYDTLAAFDGEEALESFASYQPDLIVLDLML--PKKDGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112 E+ R IR S VP+I ++ + + G DD V KP +RE ++V Sbjct: 62 EVCREIRKTSSVPIIMLTAKGEEIDKVLGLEMGADDYVTKPFSNRELSARIKANLRRSQV 121 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 K +N G + + D G+ L RE +L YL + G+ + + Sbjct: 122 NVEAAEEKEDSNELNVGNLTIHEDAYYVSKNGKEVDLTHREFELLHYLSKHLGQVMTREH 181 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223 + ++G +D + V+ + +LR+K+ + + ++R +GY + N Sbjct: 182 LLQTVWG-YDYFGDVRTVDVTVRRLREKIEDTPSHPKLLMTRRGVGYYLQDN 232 >gi|258655036|ref|YP_003204192.1| winged helix family two component transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258558261|gb|ACV81203.1| two component transcriptional regulator, winged helix family [Nakamurella multipartita DSM 44233] Length = 226 Score = 151 bits (381), Expect = 8e-35, Method: Composition-based stats. Identities = 51/224 (22%), Positives = 100/224 (44%), Gaps = 8/224 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + + L +G S E + D+ ++ L G E Sbjct: 5 LIVEDEESMAEPLAFLLRKEGFSTEIATNGPDALETFDRVGADIVLLDLML--PGMSGTE 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + +R VP+I ++ S + + G DD + KP RE++AR+ A+ RR + Sbjct: 63 VCKQLRGRGAVPVIMVTAKDSEIDKVVGLELGADDYITKPYSTRELIARIRAVLRRGADA 122 Query: 123 NNRAETG----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++ P+R+ D V G LP +E +LEYL+ N G+ + + Q+ ++ Sbjct: 123 DDAHSPVLQAGPVRMDVDRHVVSVHGVPTSLPLKEFDLLEYLIRNAGRVLTRGQLIDRVW 182 Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 G D + ++ H+ +LR K+ + + + R LGY ++ Sbjct: 183 GA-DYVGDTKTLDVHVKRLRAKIEPDPAEPRYLVTVRGLGYKLE 225 >gi|254519262|ref|ZP_05131318.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA] gi|226913011|gb|EEH98212.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA] Length = 232 Score = 151 bits (381), Expect = 8e-35, Method: Composition-based stats. Identities = 46/227 (20%), Positives = 91/227 (40%), Gaps = 6/227 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +++DD + + + G + N+ L + ++ + G G V Sbjct: 6 ILVVDDEDHIVELISYNLINSGYKVITANNGIDAVKLAKEENPRLMLLDLMIPGLDGYDV 65 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYR 117 + R + +I ++ + + G DD + KP RE + V + Sbjct: 66 CKAIRSDNDTKDISVIMLTAKGEELDKILGLELGADDYMTKPFSIRELLARIKAVLRRTK 125 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 L S +T I + + R+ + + L +E +LE L+ NRGK + + + I Sbjct: 126 SLGGSEEIFKTNGILINFERREVLISDKKIDLTLKEFELLEILVKNRGKILTRETLLDKI 185 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223 +G ++ E V+ HI LRKK+ + +++ R +GY + N Sbjct: 186 WG-YEYVGETRTVDVHIRYLRKKIEVDDKNPKFIETIRGVGYRFNPN 231 >gi|59712595|ref|YP_205371.1| DNA-binding response regulator in two-component regulatory system with PhoR [Vibrio fischeri ES114] gi|59480696|gb|AAW86483.1| DNA-binding response regulator in two-component regulatory system with PhoR [Vibrio fischeri ES114] Length = 230 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 38/222 (17%), Positives = 94/222 (42%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D A +++ + G + L D+ ++ L G G + Sbjct: 5 ILVVEDEAPIREMLCFVLEQKGYEPIEAEDYDSALSLLCEPYPDLILLDWMLPGGSGINL 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ + ++P++ ++ + + + G DD + KP +E++AR+ A+ RR+ Sbjct: 65 IKHLKRDEFTKKIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELMARLKAVIRRVS 124 Query: 121 VSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++ ++ + + E ++L + M ++ + ++ Q+ + ++ Sbjct: 125 PTSIEELIDVQGLKLDPVSHRVTANDKPLDMGPTEFKMLHFFMTHQERVYSREQLLNNVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G + VE+ V+ HI +LRK L + V + R GY Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALEVEGHDRLVQTVRGAGYRF 225 >gi|269836215|ref|YP_003318443.1| two component transcriptional regulator, winged helix family [Sphaerobacter thermophilus DSM 20745] gi|269785478|gb|ACZ37621.1| two component transcriptional regulator, winged helix family [Sphaerobacter thermophilus DSM 20745] Length = 231 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 36/224 (16%), Positives = 78/224 (34%), Gaps = 10/224 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + +G ++ D ++ + G + Sbjct: 8 LIVDDEEDIVALMRDFLEAEGYAVLAAYDGPTALRTLEHEPVDCVLLDVMMPGP--SGYD 65 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV----NKPIHHREILARVAAIYRR 118 + R IR + VP++ ++ + G DD + I A + R Sbjct: 66 VLRRIRENRDVPVLFLTARQEDHDKIRGLGLGADDFIVKSATPGEVVARIKAVLRRYRRG 125 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + G + + + V G+ L RE +L+ + + + Q+F ++ Sbjct: 126 EPAPRAVLDFGRLVIDVQAHEVRVDGKPVQLTAREFELLQLFAEHPRQVFTREQLFQRLW 185 Query: 179 GLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221 G E + + V HI +LR+K+ + + + +GY D Sbjct: 186 G---EFGDRHTVTVHIGRLREKIEEDPANPRYIVTVWGVGYRFD 226 >gi|228905009|ref|ZP_04069054.1| Two-component response regulator [Bacillus thuringiensis IBL 4222] gi|228854640|gb|EEM99253.1| Two-component response regulator [Bacillus thuringiensis IBL 4222] Length = 233 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 45/230 (19%), Positives = 89/230 (38%), Gaps = 11/230 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ ++G + E L + ++ + Sbjct: 6 ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIM--MPKVDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + +R ++P+I +S + +G DD V KP + E++AR+ + RR Sbjct: 64 HMCMKVRESKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMK 123 Query: 122 SNNRAETG-------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N A +++ V+G+ L RE ILE L N G + QI+ Sbjct: 124 MNGFAIQNEDELEIGEMKINISTHKVIVEGDEVKLTPREFSILELLARNPGMVFSAEQIY 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223 ++ +N V HI K+R+K+ + + +GY I+ + Sbjct: 184 EKVWNERSFQ-SDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGYKIEKD 232 >gi|205375079|ref|ZP_03227870.1| two component transcriptional regulator [Bacillus coahuilensis m4-4] Length = 234 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 38/228 (16%), Positives = 83/228 (36%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L DD + D +G + + L + + ++ + Sbjct: 4 ILLADDEESILDVCRRYLELEGYRVITATDGQDALKLVNEYSPHLIVLDIM--MPIQDGW 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-------REILARVAA 114 + +R P+I ++ + + G DD + KP IL RV Sbjct: 62 HVAEQVRVSRDTPIIMLTALGQERDRIYGLSIGADDYLVKPFSPKELVLRVNNILRRVYR 121 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + G +++ +D R E + L +E +L L + + +K+Q+ Sbjct: 122 TGGVKEEQPSLIRFGELKIDTDRRLVERNRKEIELTVKEYDLLVLLSRHPKQVFSKSQLI 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 ++G ++ + N V HI +LR+K+ + + + +GY + Sbjct: 182 EKVWG-YEYDGDANTVNVHIRRLREKIEMDPSNPQFIHTVWGIGYRFE 228 >gi|218232740|ref|YP_002365097.1| DNA-binding response regulator [Bacillus cereus B4264] gi|228962219|ref|ZP_04123659.1| Two-component response regulator [Bacillus thuringiensis serovar pakistani str. T13001] gi|229042157|ref|ZP_04189914.1| Two-component response regulator [Bacillus cereus AH676] gi|229107932|ref|ZP_04237562.1| Two-component response regulator [Bacillus cereus Rock1-15] gi|229143055|ref|ZP_04271491.1| Two-component response regulator [Bacillus cereus BDRD-ST24] gi|229148658|ref|ZP_04276911.1| Two-component response regulator [Bacillus cereus m1550] gi|296501083|ref|YP_003662783.1| two-component response regulator [Bacillus thuringiensis BMB171] gi|218160697|gb|ACK60689.1| DNA-binding response regulator [Bacillus cereus B4264] gi|228634819|gb|EEK91395.1| Two-component response regulator [Bacillus cereus m1550] gi|228640420|gb|EEK96814.1| Two-component response regulator [Bacillus cereus BDRD-ST24] gi|228675530|gb|EEL30744.1| Two-component response regulator [Bacillus cereus Rock1-15] gi|228727192|gb|EEL78392.1| Two-component response regulator [Bacillus cereus AH676] gi|228797467|gb|EEM44640.1| Two-component response regulator [Bacillus thuringiensis serovar pakistani str. T13001] gi|296322135|gb|ADH05063.1| two-component response regulator [Bacillus thuringiensis BMB171] Length = 233 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 46/230 (20%), Positives = 89/230 (38%), Gaps = 11/230 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ ++G + E L + ++ + Sbjct: 6 ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIM--MPKVDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + +R ++P+I +S + +G DD V KP + E++AR+ + RR Sbjct: 64 HMCMKVREAKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMK 123 Query: 122 SNNRAETG-------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N A +++ V+GE L RE ILE L N G + QI+ Sbjct: 124 MNGFAIQNEDELEIGEMKINISTHKVIVEGEEVKLTPREFSILELLARNPGMVFSAEQIY 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223 ++ +N V HI K+R+K+ + + +GY I+ + Sbjct: 184 EKVWNERSFQ-SDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGYKIEKD 232 >gi|157694431|ref|YP_001488893.1| response regulator [Bacillus pumilus SAFR-032] gi|194016445|ref|ZP_03055059.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Bacillus pumilus ATCC 7061] gi|157683189|gb|ABV64333.1| response regulator [Bacillus pumilus SAFR-032] gi|194011918|gb|EDW21486.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Bacillus pumilus ATCC 7061] Length = 235 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 41/228 (17%), Positives = 92/228 (40%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + + + D+ ++ L + + Sbjct: 5 ILVVDDEKPIADILEFNLRKEGYEVHCAYDGNEALEMVEEIKPDIILLDIML--PNKDGV 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR--------EILARVA 113 E+ R +R +P+I ++ S + + G DD V KP R + ++A Sbjct: 63 EVCREVRKKYDMPIIMLTAKDSEIDKVIGLELGADDYVTKPFSTRELLARVKANLRRQIA 122 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + +N E G + ++ D + E L RE +L YL + G+ + + + Sbjct: 123 TPQTEEESESNDIEIGSLVIYPDAYVVSKREETIELTHREFELLHYLAKHIGQVMTREHL 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++G +D + V+ + +LR+K+ + + ++R +GY + Sbjct: 183 LQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPSWIVTRRGVGYYL 229 >gi|229119933|ref|ZP_04249189.1| hypothetical protein bcere0016_2530 [Bacillus cereus 95/8201] gi|228663526|gb|EEL19110.1| hypothetical protein bcere0016_2530 [Bacillus cereus 95/8201] Length = 237 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 44/228 (19%), Positives = 88/228 (38%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD +++ + ++ E L + + ++ + Sbjct: 6 ILIADDDKEIRNLLKIYLERELYMVDTAIDGEVALQLFNQNNYSIVILDLM--MPKVDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R + VP++ ++ + G DD + KP E++ARV A+ RR V Sbjct: 64 EVCRKLRDKTNVPILMLTAKDHAVDKILGLSIGADDYITKPFSIHEVVARVKALIRRFLV 123 Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + + E L +E +L++ +N G+ KTQ+ Sbjct: 124 LGSNINVQEKTTLAFKGLTINLNTYTVHTNKEEISLTGKELELLKFFTSNPGQVFTKTQL 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 F ++ + ++N V HI KLRKK+ N + + +GY Sbjct: 184 FRNVWD-DNYIEDDNTVMVHIRKLRKKIEINPSNPKFIQTVWGIGYKF 230 >gi|124024919|ref|YP_001014035.1| two-component response regulator [Prochlorococcus marinus str. NATL1A] gi|123959987|gb|ABM74770.1| two-component response regulator [Prochlorococcus marinus str. NATL1A] Length = 248 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 44/228 (19%), Positives = 91/228 (39%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD A ++ G + L + D+ ++ Sbjct: 11 ILVADDEASIRRILETRLSMIGYQVVTACDGNEALDLFRNCEPDLVVLDVM--MPKLDGY 68 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + +R S VP++ ++ + + + G DD V KP +E+ AR+ + RR++ Sbjct: 69 GVCQELRKESDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCLLRRVEK 128 Query: 122 SNN-------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 +++ ++ R E L E +LE L++ G+ ++ +I Sbjct: 129 EQIAGLPNSGVIAVMNLKIDTNKRQVYRNDERIRLTGMEFSLLELLVSRSGEPFSRGEIL 188 Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 ++G + V+ VV+ HIS+LR KL + + + + R GY Sbjct: 189 KEVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGYLF 236 >gi|315442360|ref|YP_004075239.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Mycobacterium sp. Spyr1] gi|315260663|gb|ADT97404.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Mycobacterium sp. Spyr1] Length = 228 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 52/226 (23%), Positives = 100/226 (44%), Gaps = 10/226 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + D L +G A D+ ++ L G + Sbjct: 5 LIVEDEESLADPLAFLLRKEGFETTVVTDGPSALAEFERAGADIVLLDLML--PGMSGTD 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + +R+ S VP+I ++ S + + G DD V KP RE++AR+ A+ RR + Sbjct: 63 VCKQLRSRSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGADT 122 Query: 123 NNRAETG------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 ++ P+R+ + V G LP +E +LEYLM N G+ + + Q+ Sbjct: 123 DDVGVADGVLEAGPVRMDVERHVVSVNGSPITLPLKEFDLLEYLMRNSGRVLTRGQLIDR 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 ++G D + ++ H+ +LR K+ + + + R LGY ++ Sbjct: 183 VWGA-DYVGDTKTLDVHVKRLRSKIESDPANPVHLVTVRGLGYKLE 227 >gi|228955968|ref|ZP_04117903.1| Two-component response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228803712|gb|EEM50396.1| Two-component response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 233 Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats. Identities = 46/230 (20%), Positives = 89/230 (38%), Gaps = 11/230 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ ++G + E L + ++ + Sbjct: 6 ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEIHLVVLDIM--MPKVDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + +R ++P+I +S + +G DD V KP + E++AR+ + RR Sbjct: 64 HMCMKVREAKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMK 123 Query: 122 SNNRAETG-------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N A +++ V+GE L RE ILE L N G + QI+ Sbjct: 124 MNGFAVQNEDELEIGEMKINISTHKVVVEGEEVKLTPREFSILELLARNPGMVFSAEQIY 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223 ++ +N V HI K+R+K+ + + +GY I+ + Sbjct: 184 EKVWNERSFQ-SDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGYKIEKD 232 >gi|325963934|ref|YP_004241840.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Arthrobacter phenanthrenivorans Sphe3] gi|323470021|gb|ADX73706.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Arthrobacter phenanthrenivorans Sphe3] Length = 224 Score = 150 bits (380), Expect = 9e-35, Method: Composition-based stats. Identities = 47/220 (21%), Positives = 86/220 (39%), Gaps = 5/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + +DG + S+R D+ ++ L G + Sbjct: 5 ILVVDDDEALAEMIGIVLRNDGFEPVFCADGAQALDVFRSSRPDLVLLDLML--PGMDGI 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +RA S VP++ ++ + +SG DD V KP E++ARV A R Sbjct: 63 EVCRQVRAESDVPIVMLTAKSDTSDVVRGLESGADDYVPKPFKPAELVARVRARLRPGDQ 122 Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 I + G E L E +L L + + + ++G Sbjct: 123 KAPETLRIADITIDVAGHTVSRGNERISLTPLEFDLLVALARKPWQVFTRELLLEQVWG- 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219 + A + +V H+ +LR K+ + V + R +GY Sbjct: 182 YRHAADTRLVNVHVQRLRSKIEQDPEAPEVVLTVRGVGYK 221 >gi|226949267|ref|YP_002804358.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] gi|226844404|gb|ACO87070.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] Length = 221 Score = 150 bits (380), Expect = 9e-35, Method: Composition-based stats. Identities = 48/224 (21%), Positives = 95/224 (42%), Gaps = 10/224 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + + G +E + D+ ++ L Sbjct: 5 ILVVEDDFDIHTIISEVLKESGYLVEVATDGLIAVEMFRRGNFDLIILDVML--PKIDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 + IIR S VP+I ++ + + F+ VDD + KP ++ RV Sbjct: 63 VVCEIIRKESSVPIIMLTALGEEEDEMKGFELKVDDYITKPFSINLLIKRVEAVLRRANG 122 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 L+ +N+ I ++ V + L +E +ILE LM+N G+ ++ + + I+ Sbjct: 123 LEENNSTLTFEEITIYPSNYKTLVNNKEIELTYKEFQILEILMSNVGRVFSRESLLNQIW 182 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 G +D + V+++HI LR+KL D + + R +GY I+ Sbjct: 183 G-YDYFGDTRVIDTHIKNLRQKL----NIDYIKTIRGVGYKIEK 221 >gi|170755155|ref|YP_001781532.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] gi|169120367|gb|ACA44203.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] Length = 221 Score = 150 bits (380), Expect = 9e-35, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 95/224 (42%), Gaps = 10/224 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + + G +E + D+ ++ L Sbjct: 5 ILVVEDDFDIHTIISEVLKESGYLVEVATDGLIAVEMFRRWNFDLIILDVML--PKIDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 + IIR S VP+I ++ + + F+ VDD + KP ++ RV Sbjct: 63 VVCEIIRKESSVPIIMLTALGEEEDEMKGFELKVDDYITKPFSINLLIKRVEAVLRRANG 122 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 L+ +N+ I ++ V + L +E +ILE L++N G+ ++ + + I+ Sbjct: 123 LEENNSTLTFEEITIYPSNYKTLVNNKEIELTYKEFQILEILISNAGRVFSRESLLNQIW 182 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 G +D + V+++HI LR+KL D + + R +GY I+ Sbjct: 183 G-YDYFGDTRVIDTHIKNLRQKL----NIDYIKTIRGVGYKIEK 221 >gi|91774844|ref|YP_544600.1| two component transcriptional regulator [Methylobacillus flagellatus KT] gi|91708831|gb|ABE48759.1| two component transcriptional regulator, winged helix family [Methylobacillus flagellatus KT] Length = 228 Score = 150 bits (380), Expect = 9e-35, Method: Composition-based stats. Identities = 51/224 (22%), Positives = 100/224 (44%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D +++ G + S+E + L A D+ ++ L G + Sbjct: 5 ILVVEDEPAIQELLALNLTQAGHNPVRALSVEQAQMLIREALPDLILLDWML--PGMSGI 62 Query: 62 ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IY 116 E R +++ +P+I ++ + + G DD V KP RE+ AR+ A Sbjct: 63 EFARKLKSDELTKAIPIIMLTARGEEADKVRGLEVGADDYVTKPFSPRELNARIKAVLRR 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 R +++++ E G +R+ G+ L E R+L YLM+N + ++TQ+ Sbjct: 123 RAPQMTDDPLEIGGLRLDPMTHRVSGNGKTLELGPTEFRLLHYLMSNPERVHSRTQVLDR 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G VE+ V+ HI +LR+ L + + + R +GY Sbjct: 183 VWGDR-VFVEDRTVDVHIRRLRRALSESGHEEFIQTVRGVGYRF 225 >gi|117927299|ref|YP_871850.1| two component transcriptional regulator [Acidothermus cellulolyticus 11B] gi|117647762|gb|ABK51864.1| two component transcriptional regulator, winged helix family [Acidothermus cellulolyticus 11B] Length = 228 Score = 150 bits (380), Expect = 9e-35, Method: Composition-based stats. Identities = 52/226 (23%), Positives = 98/226 (43%), Gaps = 9/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + + +G + S L D+ ++ L G Sbjct: 5 LLVIEDEESFSETLAYMLRREGFVVHTAGSGTEGLELFERQGADLVLLDLML--PGLSGT 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R +R S VP+I ++ S + + G DD V KP RE++AR+ A+ RR Sbjct: 63 DVCRRLRERSNVPIIMLTARDSEVDKVVGLELGADDYVTKPFSSRELVARIRAVLRRRDG 122 Query: 122 SNNRAETG-----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + T P+R+ D V+G LP RE +LE L+ + G+ + + Q+ Sbjct: 123 GGDEQRTTVLEAGPVRIDIDRHVVLVRGAPVHLPLREFELLEMLVRHAGRVLTRQQLIDR 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 I+G D + ++ H+ +LR ++ + + + R +GY + Sbjct: 183 IWG-GDYVGDTKTLDVHVKRLRSRIEDDPSEPRHLVTVRGVGYKFE 227 >gi|229020106|ref|ZP_04176887.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH1273] gi|229026335|ref|ZP_04182694.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH1272] gi|228735051|gb|EEL85687.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH1272] gi|228741216|gb|EEL91433.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH1273] Length = 232 Score = 150 bits (380), Expect = 9e-35, Method: Composition-based stats. Identities = 53/229 (23%), Positives = 86/229 (37%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD A + D +G + E + + ++ ++ Sbjct: 6 ILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAMHIIQTQPIELVVLDIM--MPKMDGY 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IRA +P+I +S S + G DD + KP E++ARV A RR Sbjct: 64 EVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLT 123 Query: 122 SNNRAETGP--------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 N I + + R V GE L +E IL L ++ K + I Sbjct: 124 LNQPKIEESKSALEIGGIVIDPERRTVNVYGEPIELTPKEFDILYVLASHPKKVYSVENI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221 F ++ N V HI LRKKL +K + + +GY+ + Sbjct: 184 FQQVWADDYYEGG-NTVMVHIRTLRKKLGEDKRKNKLIKTVWGVGYTFN 231 >gi|169826282|ref|YP_001696440.1| two-component response regulator; MrsR2 protein [Lysinibacillus sphaericus C3-41] gi|168990770|gb|ACA38310.1| probable two-component response regulator; probable MrsR2 protein [Lysinibacillus sphaericus C3-41] Length = 240 Score = 150 bits (380), Expect = 9e-35, Method: Composition-based stats. Identities = 45/230 (19%), Positives = 90/230 (39%), Gaps = 14/230 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +++DD A + + +G + S+ D+ ++ L + Sbjct: 6 ILVVDDEADLANLLKVSLQKEGYKQIYTAGSIHDAWTSFQQTSPDIVLLDVML--PDGEG 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-------- 112 +L R IR S VP++ +S + G DD + KP +E+ RV Sbjct: 64 YDLCRRIREISHVPVLFMSAKNEEIDKILGLAIGGDDYITKPFSPKEVAYRVKAQLRRVG 123 Query: 113 -AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 ++ + GP ++ +D + G + L +E ++ M N + ++K Sbjct: 124 YQTHETTSGMAEKTIQVGPFQLNADETEVHKDGILLELTAKEIGLMACFMHNPHRILSKE 183 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 +F ++G D +N V HI +LR+K+ + + + + LGY Sbjct: 184 TLFERVWGE-DFFGSDNTVMVHIRRLREKIEQDASKPIFITTVKGLGYKF 232 >gi|167760996|ref|ZP_02433123.1| hypothetical protein CLOSCI_03394 [Clostridium scindens ATCC 35704] gi|167661375|gb|EDS05505.1| hypothetical protein CLOSCI_03394 [Clostridium scindens ATCC 35704] Length = 225 Score = 150 bits (380), Expect = 9e-35, Method: Composition-based stats. Identities = 45/225 (20%), Positives = 96/225 (42%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D +++ D G + + D+ ++ L Sbjct: 4 ILIIEDDLDIQEMLQFFLEDQGYQVLAAENGIDGVTAFRKGNPDLILLDIML--PKMDGY 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNK----PIHHREILARVAAIYR 117 + +IR S++P+I IS S + L F+ +DD + K PI ++I A + Sbjct: 62 TVCEMIRQESEIPVIMISALGSEEDQLKGFELQIDDYIPKPISLPIMMKKIEAVIRRYEN 121 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + + D +V + L ++E IL+ L+ N+G+ +++ + + Sbjct: 122 KGLEKKEELHYKEMTLMVDNYRVKVGKKDINLTQKEYEILKELLENQGRVISRDSFLNRL 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + ++ EE V++HI LRKKL + +++ R +GY ++ Sbjct: 182 W-RYEYVGEERAVDNHIKNLRKKLGDAGN--YIETVRGVGYRVEK 223 >gi|158338366|ref|YP_001519543.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] gi|158308607|gb|ABW30224.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] Length = 235 Score = 150 bits (380), Expect = 9e-35, Method: Composition-based stats. Identities = 52/232 (22%), Positives = 95/232 (40%), Gaps = 14/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQS------SAREDVSAIEAFLIG 55 +L++D +++ +G + + + + I ++ Sbjct: 4 ILLVEDEENIRETIAPALQSEGYRVITAADGQTALDVIQLFKSRSQQASTLDLIILDIML 63 Query: 56 KGEKVLELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114 G ++L R I R S VP++ +S + + + G DD + KP RE++AR A Sbjct: 64 PGINGIDLCRFIRREGSTVPVLMLSAKDTEADRVVGLEVGADDYLTKPFGMRELIARCRA 123 Query: 115 IYRRLKVSNNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 + RR +++N + I + D V+ E L +E RILE M+ + Sbjct: 124 LLRRQRLNNTDPQGTLLTCREISLHPDECRVMVRDEEVNLSPKEFRILELFMSYPRRVWP 183 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + QI I+G D + V+ HI LR+K+ + D + + R GY Sbjct: 184 REQILEKIWG-PDYIGDSKTVDVHIRWLREKIELDPSNPDYLVTIRGFGYRF 234 >gi|89097111|ref|ZP_01170001.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911] gi|89087934|gb|EAR67045.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911] Length = 227 Score = 150 bits (380), Expect = 9e-35, Method: Composition-based stats. Identities = 46/226 (20%), Positives = 92/226 (40%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + + G + ++ E L + + ++ L G Sbjct: 4 ILIIEDETDIAELERDYLEVSGFDSDIASNGEEGLRLAKTNEYSLILLDLML--PGIDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 +L R +R +P++ ++ + FD G DD + KP + E++ARV A R Sbjct: 62 QLCREMREFLDIPILMVTARKEDIDKIRGFDRGADDYIVKPFNPNELVARVKAHTARYDR 121 Query: 122 SNNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 +R + +D R GE +E +L +L +N + +K +F Sbjct: 122 VISRQPEKREVRKRGLVMDADSRRVYADGEEKVFTAKEFDLLWFLASNPDRVFSKEHLFE 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 I+G +D + V HI K+R+K+ + + +++ +GY Sbjct: 182 RIWG-YDSLGDITTVTVHIRKIREKIEKDPSSPEYIETIWGMGYRF 226 >gi|150390626|ref|YP_001320675.1| two component transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149950488|gb|ABR49016.1| two component transcriptional regulator, winged helix family [Alkaliphilus metalliredigens QYMF] Length = 229 Score = 150 bits (380), Expect = 9e-35, Method: Composition-based stats. Identities = 44/226 (19%), Positives = 98/226 (43%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + +G S+ ++ E L + D+ ++ L G + Sbjct: 6 ILVVDDEEHIIELIKFNLEKNGFSVLTSDNGEESIELVKNNDVDLIVLDLML--PGIDGI 63 Query: 62 ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AA 114 E+ + IR P+I ++ + + G DD + KP RE++AR+ Sbjct: 64 EVCKRIRRMDDYDKTPIIMLTAMGEETDRILGLELGADDYMTKPFSIRELVARIKAVLRR 123 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + V + + + ++ + ++ + L +E ++ L NRGK +++ + Sbjct: 124 SEEKQTVRAIKLVVKDLMIDTEKHEVRIKDQPIELTLKEFELVRILAENRGKVLSRNLLL 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G +D E V+ HI LRKK+ + + +++ R +GY + Sbjct: 184 DEVWG-YDYFGETRTVDVHIRHLRKKIGDDQSGEYIETIRGVGYKM 228 >gi|238917142|ref|YP_002930659.1| two-component system, OmpR family, phosphate regulon response regulator OmpR [Eubacterium eligens ATCC 27750] gi|238872502|gb|ACR72212.1| two-component system, OmpR family, phosphate regulon response regulator OmpR [Eubacterium eligens ATCC 27750] Length = 238 Score = 150 bits (380), Expect = 9e-35, Method: Composition-based stats. Identities = 46/227 (20%), Positives = 94/227 (41%), Gaps = 10/227 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD ++ G D ++ E + + D+ ++ L L Sbjct: 15 LVVDDEKMIVKGLKFSLMQDYSEVDCAYDGEEALEYVRNNKYDIILLDIML--PKLDGLS 72 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH------HREILARVAAIY 116 + + IR S VP+I ++ + D G DD + KP + + + R + Sbjct: 73 VCQQIREFSNVPIIMLTAKGDDMDKILGLDYGADDYITKPFNILEVKARMKAILRRNSSI 132 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + +N + G +++ D R + + L +E +LE L N GK ++ + A Sbjct: 133 TQKEQKSNVIKAGDMKIDCDSRSLYIADKEINLTAKEFDLLEILAVNPGKVYSRDNLLKA 192 Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 ++G D + V+ H+ +LR+K+ N V +K +GY + Sbjct: 193 VWGQ-DYTGDARTVDVHMRRLREKIENNPSEPKYVHTKWGVGYYFNV 238 >gi|332975597|gb|EGK12487.1| DNA-binding response regulator [Desmospora sp. 8437] Length = 234 Score = 150 bits (380), Expect = 9e-35, Method: Composition-based stats. Identities = 40/229 (17%), Positives = 88/229 (38%), Gaps = 14/229 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + +G + + E + + D+ ++ L + Sbjct: 4 ILLVEDEERLGQLISEQLRLEGHRVTVASDGEEGYRMWKQEQPDLVILDWML--PRMDGV 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-------- 113 E+ R IR S VP++ ++ + + G DD + KP E+ ARV Sbjct: 62 EVCRKIRETSIVPVMMLTAKGDEMEKVWGLEVGADDYMTKPFSTWELKARVRALLRRAAF 121 Query: 114 -AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 I++ + R+ +++ ++ L +E +LE ++ G+ ++ Sbjct: 122 GRERSEFASEGGVLSFPFIQLDREKREVKLEDQLLVLTPKEYELLELFLSYPGRVFSRAY 181 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + I+ D + V++ IS+LRKK +++ GY + Sbjct: 182 LMDRIW-EADYLENDRTVDTQISRLRKKFGLYG--KAIETVWGTGYKFN 227 >gi|328954298|ref|YP_004371632.1| two component transcriptional regulator, winged helix family [Desulfobacca acetoxidans DSM 11109] gi|328454622|gb|AEB10451.1| two component transcriptional regulator, winged helix family [Desulfobacca acetoxidans DSM 11109] Length = 228 Score = 150 bits (380), Expect = 9e-35, Method: Composition-based stats. Identities = 49/226 (21%), Positives = 86/226 (38%), Gaps = 12/226 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + +G + + E S ++ ++ L G L Sbjct: 6 ILVVDDEEDILELVRYNLTKEGYRVTAVATGEEALRTAHSIHPELILLDLML--PGVDGL 63 Query: 62 ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 E+ R ++ S VP+I +S + + G D V KP R ++AR+ A+ RR Sbjct: 64 EVCRKLKQDPKTSHVPIIMLSAKGEEADIVTGLELGAADYVTKPFSPRVLIARLRAVLRR 123 Query: 119 LKVSNNRAETGPIRVFSDGRDPEV----QGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 QG+ L E R+L L G ++QI Sbjct: 124 RSAEPLSESAPLTIHDLVIHPGRHEVLIQGQQVDLTVTEFRLLHMLARRPGWVFTRSQIV 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + ++G D V + V+ + LRKKL D +++ R +GY Sbjct: 184 NTVHG-DDYPVSDRSVDVQVVGLRKKLGALG--DYIETVRGVGYRF 226 >gi|315039000|ref|YP_004032568.1| response regulator [Lactobacillus amylovorus GRL 1112] gi|312277133|gb|ADQ59773.1| response regulator [Lactobacillus amylovorus GRL 1112] gi|327184133|gb|AEA32580.1| response regulator [Lactobacillus amylovorus GRL 1118] Length = 233 Score = 150 bits (380), Expect = 9e-35, Method: Composition-based stats. Identities = 43/226 (19%), Positives = 85/226 (37%), Gaps = 11/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D V G +G + + L + ++ L + Sbjct: 8 ILLVEDEEAVASFVKTELGFEGYQVIWAQDGKEALELFQKEDPTLILLDWML--PVYDGI 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAA 114 + R IR S VP+I ++ S D G+DD + KP E+ R+ Sbjct: 66 TVLRRIRKQSDVPIIMLTAKNSASDISSALDQGLDDYITKPFEIEELFARIRVILRRLKK 125 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + GP+++ + E L +E ++ LM + K ++ ++ Sbjct: 126 TQEQNAAPTSTFTFGPLKIDLVKHEFYCNDEKIYLTPKEFALMTELMQDPEKVKSRDELL 185 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G +D + N V+ +I +R KL + + R LGY + Sbjct: 186 DVVWG-YDFVGQTNTVDVYIRTIRNKLGEPY-KKLIKTVRGLGYCL 229 >gi|187932998|ref|YP_001885393.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Clostridium botulinum B str. Eklund 17B] gi|187721151|gb|ACD22372.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridium botulinum B str. Eklund 17B] Length = 234 Score = 150 bits (380), Expect = 9e-35, Method: Composition-based stats. Identities = 42/228 (18%), Positives = 93/228 (40%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + G + N+ + + ++ L G Sbjct: 6 ILIVDDEEHIIELLKFNLVNAGYKVLSSNNGIDALKIAKMENPKLILLDLML--PGLDGF 63 Query: 62 ELPRII---RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 ++ + + + + +I ++ + + G DD + KP RE+LARV A+ RR Sbjct: 64 DVCKEVKKDKETQNISIIMLTAKGEEIDKILGLELGADDYITKPFSVRELLARVKAVLRR 123 Query: 119 LKVSNNRAETGPI----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + ++ D + + + L +E +L+ L+ N+GK + + + Sbjct: 124 TYPGADIENNSYESKGLKIDFDRHEVFINNQKVELTLKEFDLLKILIKNKGKILQRETLL 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221 I+G ++ E V+ HI LRKK+ + +++ R +GY + Sbjct: 184 DKIWG-YEYIGETRTVDVHIRYLRKKIEEDDKNPKFIETIRGVGYRFN 230 >gi|306829564|ref|ZP_07462754.1| DNA-binding response regulator [Streptococcus mitis ATCC 6249] gi|304428650|gb|EFM31740.1| DNA-binding response regulator [Streptococcus mitis ATCC 6249] Length = 252 Score = 150 bits (380), Expect = 9e-35, Method: Composition-based stats. Identities = 49/234 (20%), Positives = 98/234 (41%), Gaps = 15/234 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + + L + + D+ ++ L L Sbjct: 21 ILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREAIELFEAEQPDIIILDLML--PEIDGL 78 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-------- 113 E+ + IR S VP+I +S S + + G DD V KP +RE+ ARV Sbjct: 79 EVAKAIRKTSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTDL 138 Query: 114 ---AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + + + G + + D + GE L RE +L +L ++ G+ + + Sbjct: 139 VSVDSQESDEKKSQPLQIGDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHIGQVITR 198 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223 + ++G +D + V+ I +LR+K+ + + + ++R +GY + N Sbjct: 199 EHLLETVWG-YDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 251 >gi|218245356|ref|YP_002370727.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 8801] gi|257058392|ref|YP_003136280.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8802] gi|218165834|gb|ACK64571.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8801] gi|256588558|gb|ACU99444.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8802] Length = 234 Score = 150 bits (380), Expect = 9e-35, Method: Composition-based stats. Identities = 35/233 (15%), Positives = 79/233 (33%), Gaps = 12/233 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D + + + + + L + D+ ++ L G +V Sbjct: 3 ILIVEDAPEIANLIQETLERESFICQIASDGLAALELFKRQQPDLIILDLMLPKLDGLEV 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILAR 111 R + ++ ++ + +G DD + KP E + Sbjct: 63 CTRIRQTSTNKDPYILMLTAKGEAIDRVIGLSTGADDYLVKPFSPIELVARVRALLRRSL 122 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + R + + E L E +L M+ G+ +++ Sbjct: 123 RHGGQPKNVYQTAHFIVDLDRHIATRKLDNESEETLELTTLEFSLLSTFMSYPGRVWSRS 182 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223 Q+ ++G D +E VV++HI +LRKK+ + + +GY + N Sbjct: 183 QLIEKLWG-DDFFGDERVVDTHIRRLRKKIEPDTANPTFIKTVVGIGYKFEDN 234 >gi|302384891|ref|YP_003820713.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] gi|302195519|gb|ADL03090.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] Length = 235 Score = 150 bits (380), Expect = 9e-35, Method: Composition-based stats. Identities = 44/232 (18%), Positives = 84/232 (36%), Gaps = 14/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D DG + N+ E + + + ++ G L Sbjct: 7 ILVVDDEKEIADLVEIYLVSDGYKVYKANNAEEGLGVLEKNQIHLVLLDIM--MPGMDGL 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH----------HREILAR 111 ++ + IR + +P+I +S + + +G DD V KP + + Sbjct: 65 QMCKKIRETNNIPIIMLSAKSTDLDKILGLGTGADDYVTKPFNPLELTARVKSQLRRYTQ 124 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + + N + + D V GE L E IL L +N G+ + Sbjct: 125 LNPNSAVNEAVKNEIAIRGLTINKDNHKVTVYGEEIKLTPIEFDILYLLASNPGRVFSTD 184 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 +IF ++ N V HI +LR K++ + + +GY I+ Sbjct: 185 EIFEKVWNEKVYEAN-NTVMVHIRRLRGKMKEDTRQNKIITTVWGVGYKIEK 235 >gi|183984499|ref|YP_001852790.1| two component response transcriptional regulatory protein MprA [Mycobacterium marinum M] gi|183177825|gb|ACC42935.1| mycobacterial persistence regulator MprA [Mycobacterium marinum M] Length = 232 Score = 150 bits (380), Expect = 9e-35, Method: Composition-based stats. Identities = 43/226 (19%), Positives = 89/226 (39%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V++ +G ++E + + +S R D ++ L Sbjct: 5 ILVVDDDRAVRESLRRSLSFNGYTVELAHDGVEALEMIASDRPDALVLDVM--MPRLDGL 62 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPI------HHREILARVAA 114 E+ R +R+ P++ ++ S+ + D+G DD + KP L R Sbjct: 63 EVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTK 122 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + + R+ L R E +LE L+AN + + +++I Sbjct: 123 PEDDEAADSVAMTFSDLSLDPVTREVTRGARRISLTRTEFALLEMLIANPRRVLTRSRIL 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G FD N +E ++ LR+K + + + R +GY + Sbjct: 183 EEVWG-FDFPTSGNALEVYVGYLRRKTEAEGEPRLIHTVRGVGYVL 227 >gi|126348166|emb|CAJ89887.1| putative two-component system response regulator [Streptomyces ambofaciens ATCC 23877] Length = 229 Score = 150 bits (380), Expect = 9e-35, Method: Composition-based stats. Identities = 57/225 (25%), Positives = 96/225 (42%), Gaps = 10/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++I+D V++G G + + E L S R D ++ L G LE Sbjct: 5 LIIEDDRAVREGVRLALRRQGHEVAAAATGEDGLELLRSFRPDAVILDLML--PGMPGLE 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118 + R IRAH QVP+I + + ++G DD V KP+ R + AR+ A+ RR Sbjct: 63 VCRRIRAHHQVPIIMATARGDDTDIVVGLEAGADDYVVKPVRARVLDARIRAVLRRVGGA 122 Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + G + + G QG L E R+L L A+ G+ ++ Q+ A Sbjct: 123 PDDHGTTRPEHHGDLVIDRAGLTVTHQGRPVALGPSELRLLLTLSASAGQVFSRQQLLEA 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 ++ + + +V++ + +LR K+ G V + R GY Sbjct: 183 VW-EHNYHGDARLVDACVKRLRSKIGEPAGRPRYVHTVRGFGYRF 226 >gi|282860511|ref|ZP_06269577.1| two component transcriptional regulator, winged helix family [Streptomyces sp. ACTE] gi|282564247|gb|EFB69783.1| two component transcriptional regulator, winged helix family [Streptomyces sp. ACTE] gi|320009413|gb|ADW04263.1| two component transcriptional regulator, winged helix family [Streptomyces flavogriseus ATCC 33331] Length = 226 Score = 150 bits (380), Expect = 9e-35, Method: Composition-based stats. Identities = 52/224 (23%), Positives = 95/224 (42%), Gaps = 8/224 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D D + +G + + D+ ++ L G E Sbjct: 5 LVVEDEESFSDALSYMLRKEGFEVAIAATGPDGLDEFERNGADLVLLDLML--PGLPGTE 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +R S VP+I ++ S + + G DD V KP RE++AR+ A+ RR Sbjct: 63 VCRQLRVRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGEP 122 Query: 123 NNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 GP+R+ D V G LP +E +LE L+ N G+ + + Q+ ++ Sbjct: 123 EEVTPAALEAGPVRMDVDRHVVTVSGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRVW 182 Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 G D + ++ H+ +LR K+ + + + R LGY + Sbjct: 183 GA-DYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFE 225 >gi|269838051|ref|YP_003320279.1| two component transcriptional regulator, winged helix family [Sphaerobacter thermophilus DSM 20745] gi|269787314|gb|ACZ39457.1| two component transcriptional regulator, winged helix family [Sphaerobacter thermophilus DSM 20745] Length = 244 Score = 150 bits (380), Expect = 9e-35, Method: Composition-based stats. Identities = 41/227 (18%), Positives = 85/227 (37%), Gaps = 10/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G + ++ D+ ++ L G L Sbjct: 7 ILVVEDERAIASFLRRGLVFEGYRVTVADTGARALDAVRDDPPDLIILDIMLPGD-IDGL 65 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI-------LARVA 113 E+ R IRA + +P++ ++ + + D+G DD + KP E+ L R Sbjct: 66 EVCRRIRAAGEGMPILMLTARDEVADRVAGLDAGADDYLIKPFAFEELLARVRALLRRQE 125 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + + + R L RE +L M + + + + I Sbjct: 126 RRRAEEPADDGVYRFADLTLDTTSRFAYRGDRRIELTTREYELLLLFMRHPNQVLTRDVI 185 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G +D E NV+E ++S LR+ L + + R GY++ Sbjct: 186 MERVWG-YDFPGESNVLEVYVSNLRRHLEAGGEPRLLQTVRGAGYAL 231 >gi|161614708|ref|YP_001588673.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167552644|ref|ZP_02346396.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|168233471|ref|ZP_02658529.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168237152|ref|ZP_02662210.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168467538|ref|ZP_02701375.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168821792|ref|ZP_02833792.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194469497|ref|ZP_03075481.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194734514|ref|YP_002114094.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197250090|ref|YP_002145965.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|200390714|ref|ZP_03217325.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|238911082|ref|ZP_04654919.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|161364072|gb|ABX67840.1| hypothetical protein SPAB_02459 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194455861|gb|EDX44700.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194710016|gb|ACF89237.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195630054|gb|EDX48706.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197213793|gb|ACH51190.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197289769|gb|EDY29130.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|199603159|gb|EDZ01705.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205322771|gb|EDZ10610.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205332481|gb|EDZ19245.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205341764|gb|EDZ28528.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] Length = 226 Score = 150 bits (380), Expect = 9e-35, Method: Composition-based stats. Identities = 47/219 (21%), Positives = 93/219 (42%), Gaps = 3/219 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D + + G ++ L + ++ L G Sbjct: 3 ILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIML--PGLDGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R +R Q P+I ++ S++ + ++G +D + KP E+LARV A R+ Sbjct: 61 QVLRALRTAHQSPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHVP 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 R + + + + G+ L R+E +L L + G+ V +T I S ++G+ Sbjct: 121 VFTRLTINGLDMDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWGI- 179 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + E N V+ I +LR K+ + + + R +GY + Sbjct: 180 NFDSETNTVDVAIRRLRAKVDDPFEKKLIMTVRGMGYRL 218 >gi|118619653|ref|YP_907985.1| two component sensory transduction protein RegX3 [Mycobacterium ulcerans Agy99] gi|183980840|ref|YP_001849131.1| two-component sensory transduction protein RegX3 [Mycobacterium marinum M] gi|118571763|gb|ABL06514.1| two component sensory transduction protein RegX3 [Mycobacterium ulcerans Agy99] gi|183174166|gb|ACC39276.1| two-component sensory transduction protein RegX3 [Mycobacterium marinum M] Length = 227 Score = 150 bits (380), Expect = 9e-35, Method: Composition-based stats. Identities = 53/225 (23%), Positives = 101/225 (44%), Gaps = 9/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + D L +G + D+ ++ L G + Sbjct: 5 LIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRSGADIVLLDLML--PGMSGTD 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + +RA S VP+I ++ S + + G DD V KP RE++AR+ A+ RR Sbjct: 63 VCKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDD 122 Query: 123 NNRAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 ++ GP+R+ + V G+ LP +E +LEYLM N G+ + + Q+ + Sbjct: 123 DSEVSDGVLESGPVRMDVERHVVSVNGDAITLPLKEFDLLEYLMRNSGRVLTRGQLIDRV 182 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 +G D + ++ H+ +LR K+ + + + R LGY ++ Sbjct: 183 WGA-DYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVRGLGYKLE 226 >gi|113971044|ref|YP_734837.1| two component transcriptional regulator [Shewanella sp. MR-4] gi|114048269|ref|YP_738819.1| two component transcriptional regulator [Shewanella sp. MR-7] gi|117921320|ref|YP_870512.1| two component transcriptional regulator [Shewanella sp. ANA-3] gi|120599604|ref|YP_964178.1| two component transcriptional regulator [Shewanella sp. W3-18-1] gi|113885728|gb|ABI39780.1| two component transcriptional regulator, winged helix family [Shewanella sp. MR-4] gi|113889711|gb|ABI43762.1| two component transcriptional regulator, winged helix family [Shewanella sp. MR-7] gi|117613652|gb|ABK49106.1| two component transcriptional regulator, winged helix family [Shewanella sp. ANA-3] gi|120559697|gb|ABM25624.1| two component transcriptional regulator, winged helix family [Shewanella sp. W3-18-1] gi|319425699|gb|ADV53773.1| two component transcriptional regulator, winged helix family [Shewanella putrefaciens 200] Length = 229 Score = 150 bits (380), Expect = 9e-35, Method: Composition-based stats. Identities = 34/224 (15%), Positives = 83/224 (37%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D +++ + G + + L D+ ++ G + Sbjct: 5 ILIVEDELAIREMLTFVMEQHGFTTSAAEDFDSAIALLKEPYPDLILLDWM--FPGGSGI 62 Query: 62 ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIY 116 +L + ++ Q+P+I ++ + + + G DD + KP +E+ + Sbjct: 63 QLAKRLKQDEFTRQIPIIMLTARGEEEDKVKGLEVGADDYITKPFSPKELVARIKAVLRR 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + + V V + E R+L + M + + ++ Q+ Sbjct: 123 SAPTRLEETIDVQGLLLDPVSHRVSVGDTVLDMGPTEFRLLHFFMTHPERVYSREQLLDN 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + VE+ V+ HI +LRK + + + R GY Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKAVEESGHDRLIQTVRGAGYRF 225 >gi|255327693|ref|ZP_05368759.1| two component transcriptional regulator, winged helix family [Rothia mucilaginosa ATCC 25296] gi|255295367|gb|EET74718.1| two component transcriptional regulator, winged helix family [Rothia mucilaginosa ATCC 25296] Length = 227 Score = 150 bits (380), Expect = 9e-35, Method: Composition-based stats. Identities = 53/226 (23%), Positives = 98/226 (43%), Gaps = 9/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + D L G +G ++ + D+ ++ L G + Sbjct: 4 ILIVEDEEALSDPLAFLLGREGFQTIVVDNGLDALPVFDREGADLVLLDVML--PGMSGM 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116 E+ R +R S VP+I ++ S + + G DD V KP RE++AR Sbjct: 62 EVCRKLREVSSVPIIMLTAKDSELDKVLGLELGADDYVTKPYSARELIARIRAVLRRRSA 121 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + + GP+R+ D V GE +P +E +LE L+ N G+ + + Q+ Sbjct: 122 ETDSATESVLQGGPVRMDIDRHVVTVNGEEISMPLKEFELLEILLRNVGRVMTRGQLIER 181 Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 ++G D + ++ HI +LR K+ + V + R LGY + Sbjct: 182 VWGA-DYVGDTKTLDVHIKRLRSKIEPDSSAPQYVVTVRGLGYKFE 226 >gi|49479989|ref|YP_034596.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|218901462|ref|YP_002449296.1| DNA-binding response regulator [Bacillus cereus AH820] gi|228913000|ref|ZP_04076642.1| Two-component response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228983517|ref|ZP_04143725.1| Two-component response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229089394|ref|ZP_04220667.1| Two-component response regulator [Bacillus cereus Rock3-42] gi|229154029|ref|ZP_04282157.1| Two-component response regulator [Bacillus cereus ATCC 4342] gi|301051996|ref|YP_003790207.1| response regulator [Bacillus anthracis CI] gi|49331545|gb|AAT62191.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|218538182|gb|ACK90580.1| DNA-binding response regulator [Bacillus cereus AH820] gi|228629449|gb|EEK86148.1| Two-component response regulator [Bacillus cereus ATCC 4342] gi|228693943|gb|EEL47633.1| Two-component response regulator [Bacillus cereus Rock3-42] gi|228776224|gb|EEM24582.1| Two-component response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228846654|gb|EEM91664.1| Two-component response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|300374165|gb|ADK03069.1| response regulator [Bacillus cereus biovar anthracis str. CI] Length = 233 Score = 150 bits (380), Expect = 9e-35, Method: Composition-based stats. Identities = 46/230 (20%), Positives = 89/230 (38%), Gaps = 11/230 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ ++G + E L + ++ + Sbjct: 6 ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIM--MPKVDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + +R ++P+I +S + +G DD V KP + E++AR+ + RR Sbjct: 64 HMCMKVREEKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMK 123 Query: 122 SNNRAETG-------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N A +++ V+GE L RE ILE L N G + QI+ Sbjct: 124 MNGFAIQNEDELEIGEMKINISTHKVIVEGEEVKLTPREFSILELLARNPGMVFSAEQIY 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223 ++ +N V HI K+R+K+ + + +GY I+ + Sbjct: 184 EKVWNERSFQ-SDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGYKIEKD 232 >gi|302558802|ref|ZP_07311144.1| DNA-binding response regulator MtrA [Streptomyces griseoflavus Tu4000] gi|302476420|gb|EFL39513.1| DNA-binding response regulator MtrA [Streptomyces griseoflavus Tu4000] Length = 231 Score = 150 bits (380), Expect = 9e-35, Method: Composition-based stats. Identities = 51/222 (22%), Positives = 95/222 (42%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D ++ G + S E L R D+ ++ L G Sbjct: 10 LLLIEDDDAIRTALELSLTRQGHRVATAASGEDGLKLLREQRPDLIVLDVML--PGIDGF 67 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120 E+ R IR Q+P+I ++ + +SG DD V KP+ R + AR+ A+ R + Sbjct: 68 EVCRRIRRTDQLPIILLTARNDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGER 127 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 S++ A G + + GE L E R+L L G+ +++ Q+ ++ Sbjct: 128 ESSDSATFGSLVIDRSAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVW-E 186 Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 D + +V++ + +LR K+ + + + R +GY +D Sbjct: 187 HDYLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRLD 228 >gi|148273658|ref|YP_001223219.1| putative two component system response regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|170783063|ref|YP_001711397.1| putative two-component system response regulator [Clavibacter michiganensis subsp. sepedonicus] gi|147831588|emb|CAN02556.1| putative two component system response regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|169157633|emb|CAQ02831.1| putative two-component system response regulator [Clavibacter michiganensis subsp. sepedonicus] Length = 230 Score = 150 bits (380), Expect = 9e-35, Method: Composition-based stats. Identities = 43/222 (19%), Positives = 83/222 (37%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++D G ++ + D+ ++ L Sbjct: 7 ILIVDDEPNIRDLLTTSLRFAGFAVRAVGNGAQAISAVLEEEPDLIILDVML--PDMNGF 64 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPI--HHREILARVAAIYRR 118 + + +RA P++ ++ + + G DD V KP + Sbjct: 65 GVTKRLRAAGYTAPILFLTAKDDTEDKITGLTVGGDDYVTKPFSLDEIVARIKAILRRTM 124 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + G + + D + V E L E ++L YLM N + ++K QI ++ Sbjct: 125 HADEDAIIRAGELTMDQDTHEVLVGEEPIELSPTEFKLLRYLMLNPNRVLSKAQILDHVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D + +VES+IS LR+KL + +KR GY + Sbjct: 185 -EYDFNGDAGIVESYISYLRRKLDQHSSEPVIQTKRGFGYML 225 >gi|319938297|ref|ZP_08012694.1| two-component system response regulator [Coprobacillus sp. 29_1] gi|319806590|gb|EFW03248.1| two-component system response regulator [Coprobacillus sp. 29_1] Length = 224 Score = 150 bits (380), Expect = 9e-35, Method: Composition-based stats. Identities = 47/222 (21%), Positives = 94/222 (42%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ +G S+ + E + + D++ ++ Sbjct: 5 ILVVDDEEHIRELIRFYLDKEGFSVREASGGEEALGILENEYIDLAIVDIM--MPVMDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 +L ++ +P+I ++ L F G+DD V KP E+LARV I +R + Sbjct: 63 QLVEEMKEFKDIPVIMLTAKSQSADKLRGFSLGIDDYVTKPFDPDELLARVKTILKRYSI 122 Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 ++ + + D + E LP ++ + L N + + Q+ I+G+ Sbjct: 123 NSQNIVQIQDVIFDGDKYEIRYHDETLHLPLKQFELAFELAKNPNQIFTREQLIEKIWGM 182 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 D + V+ HI ++R+ L + GF V + R LGY I+ Sbjct: 183 -DYDGFDRTVDVHIKRIRENLGHLPGFK-VVTVRGLGYKIEV 222 >gi|307298684|ref|ZP_07578487.1| two component transcriptional regulator, winged helix family [Thermotogales bacterium mesG1.Ag.4.2] gi|306915849|gb|EFN46233.1| two component transcriptional regulator, winged helix family [Thermotogales bacterium mesG1.Ag.4.2] Length = 228 Score = 150 bits (380), Expect = 9e-35, Method: Composition-based stats. Identities = 48/221 (21%), Positives = 99/221 (44%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + ++G ++ L SS DV ++ L K Sbjct: 10 ILIVEDEETISAFLQKGLREEGFVVDSAKDGNEAIRLSSSNPYDVIILDVLLPIK--NGF 67 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119 E+ +RA P++ ++ S+ + ++G DD + KP +E+LARV A + R Sbjct: 68 EVCSELRASGNHTPVLMLTALDSVDERVKGLNTGADDYLVKPFAFKELLARVNALLRRPR 127 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + + + + + + L +E R+LE+L N + +++TQI +++ Sbjct: 128 ESFDRVLRVSDLSIDTVSHTVKRGDKEIELSPKEYRLLEHLARNAHQVLSRTQIAESVWD 187 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D + NVV+ +I LRKK+ + +++ R GY + Sbjct: 188 Q-DFFSDSNVVDVYIRYLRKKIDDPFPTKLINTVRGFGYKL 227 >gi|88800953|ref|ZP_01116505.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Reinekea sp. MED297] gi|88776328|gb|EAR07551.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Reinekea sp. MED297] Length = 266 Score = 150 bits (380), Expect = 9e-35, Method: Composition-based stats. Identities = 39/227 (17%), Positives = 91/227 (40%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ +G ++ + ++ D+ ++ G+ Sbjct: 35 LLVVDDDLEIRELLTEYLTKNGFRVDSAAEGQQMREKLNAGHFDLIVLDIM--MPGDDGF 92 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L + +R S +P+I ++ + + G DD V KP + RE+LAR+ A+ RR + Sbjct: 93 TLCKEVRTKSNIPIIMLTAGADETDRIIGLELGADDYVGKPFNPRELLARIKAVLRRYEE 152 Query: 122 S-------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + ++ L + +L+ ++ G+ +++ + Sbjct: 153 TAVVPKVAEIIRFGDFSLHLTNRELQYQDNPPEALNGADFNLLKLFLSRPGEVLSRDDLS 212 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 + G D + + ++ IS+LR KLR+ + + R GY + Sbjct: 213 HHLRGR-DASPFDRSIDVQISRLRSKLRDDGKSPQLIKTVRGAGYIL 258 >gi|282861008|ref|ZP_06270074.1| two component transcriptional regulator, winged helix family [Streptomyces sp. ACTE] gi|282564744|gb|EFB70280.1| two component transcriptional regulator, winged helix family [Streptomyces sp. ACTE] Length = 228 Score = 150 bits (380), Expect = 9e-35, Method: Composition-based stats. Identities = 50/222 (22%), Positives = 94/222 (42%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D ++ G + + E L R D+ ++ L G Sbjct: 7 LLLIEDDDAIRTALELSLSRQGHRVATAATGEDGLELLREQRPDLVVLDVML--PGIDGF 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120 E+ R IR Q+P+I ++ + +SG DD V KP+ R + AR+ A+ R + Sbjct: 65 EVCRRIRRTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGER 124 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 S + A G + + GE L E R+L L G+ +++ Q+ ++ Sbjct: 125 ESTDSATFGSVVIDRSAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVW-E 183 Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 D + +V++ + +LR K+ + + + R +GY +D Sbjct: 184 HDYLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRLD 225 >gi|228985086|ref|ZP_04145253.1| DNA-binding response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228774573|gb|EEM22972.1| DNA-binding response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 225 Score = 150 bits (380), Expect = 9e-35, Method: Composition-based stats. Identities = 35/222 (15%), Positives = 93/222 (41%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ +G + D+ ++ Sbjct: 5 ILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKIDEVKVDMVILDIM--MPNMDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ +R + +P++ ++ + F G DD + KP E++ RV A+ +R ++ Sbjct: 63 DVCFELRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 122 Query: 122 SNNRAETGPIR-VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + +++ + + + + LP +E +L L + G+ ++ Q+ ++G Sbjct: 123 TVSQSIQVGNVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG- 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D E ++ H+++LR+K + + + + R LGY ++ Sbjct: 182 YDFEGNERTLDVHMNRLREKFQEEKSRFSIKTIRGLGYRLEV 223 >gi|299536051|ref|ZP_07049368.1| putative sensory transduction protein [Lysinibacillus fusiformis ZC1] gi|298728475|gb|EFI69033.1| putative sensory transduction protein [Lysinibacillus fusiformis ZC1] Length = 231 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 42/223 (18%), Positives = 90/223 (40%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + +G ++ + D+ ++ L + Sbjct: 5 ILIIEDEENIARVLQLELQFEGYEAAMAHTGTEGLLQYREQQWDLILLDIML--PEMSGI 62 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYR 117 ++ + IRA SQ P+I ++ ++ + D G +D V KP E + + Sbjct: 63 DVLKRIRATESQTPVIMLTAKSEVEDKVKGLDLGANDYVTKPFEIEELLARIRNALWFSQ 122 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 ++ G + + R+ + L RE +L YL+ + + + + QI A+ Sbjct: 123 KVSPKQVALSFGHLSINEQTREVVYFDKEIQLTPREYDLLFYLLKHPKQVLTREQILEAV 182 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G +D + NVV+ +I +R+KL + + R +GY + Sbjct: 183 WG-YDYYGDTNVVDVYIRYVRQKLEAANPTPLIQTIRGVGYVL 224 >gi|256397315|ref|YP_003118879.1| two component transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256363541|gb|ACU77038.1| two component transcriptional regulator, winged helix family [Catenulispora acidiphila DSM 44928] Length = 226 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 57/224 (25%), Positives = 102/224 (45%), Gaps = 8/224 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + D + ++G + ++ D+ ++ L G E Sbjct: 5 LVVEDEDSISDPLSYMLRNEGFEVAVADTGPAALEEFDRHGADLVLLDLML--PGLPGTE 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IRA S VP+I ++ S + + G DD V KP RE++AR+ A+ RR S Sbjct: 63 VCRQIRAKSNVPVIMLTAKDSEIDKVVGLELGADDYVTKPFSARELVARIRAVLRRQAAS 122 Query: 123 NNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + E GP+R+ D V G LP +E +LE L+ N G+ + + Q+ ++ Sbjct: 123 DEPDGGALEAGPVRMDVDRHKVTVDGRPVELPLKEFELLEMLLRNSGRVLTRMQLIDRVW 182 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221 G D + ++ H+ +LR K+ G + + R LGY + Sbjct: 183 GA-DYVGDTKTLDVHVKRLRAKIEPDPGTPVHLVTVRGLGYKFE 225 >gi|318058490|ref|ZP_07977213.1| putative two-component system response regulator [Streptomyces sp. SA3_actG] gi|318075596|ref|ZP_07982928.1| putative two-component system response regulator [Streptomyces sp. SA3_actF] gi|333026125|ref|ZP_08454189.1| putative response regulator [Streptomyces sp. Tu6071] gi|332745977|gb|EGJ76418.1| putative response regulator [Streptomyces sp. Tu6071] Length = 223 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 53/224 (23%), Positives = 96/224 (42%), Gaps = 8/224 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D D + +G + + D+ ++ L G E Sbjct: 2 LVVEDEESFSDALSYMLRKEGFEVAIAATGPDGLDEFERNGADLVLLDLML--PGLPGTE 59 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +R S VP+I ++ S + + G DD V KP RE++AR+ A+ RR Sbjct: 60 VCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGEP 119 Query: 123 NNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 T GP+R+ D V G LP +E +LE L+ N G+ + + Q+ ++ Sbjct: 120 EEVTPTALEAGPVRMDVDRHVVTVGGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRVW 179 Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 G D + ++ H+ +LR K+ + + + R LGY + Sbjct: 180 GA-DYVGDTKTLDVHVKRLRAKIEPDPSAPRYLVTVRGLGYKFE 222 >gi|315613222|ref|ZP_07888132.1| response regulator [Streptococcus sanguinis ATCC 49296] gi|315314784|gb|EFU62826.1| response regulator [Streptococcus sanguinis ATCC 49296] Length = 252 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 49/234 (20%), Positives = 97/234 (41%), Gaps = 15/234 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + + L + + D+ ++ L L Sbjct: 21 ILIVDDEKPISDIIKFNMAKEGYEVVTAFNGREAIELFEAEQPDIIILDLML--PEIDGL 78 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-------- 113 E+ + IR S VP+I +S S + + G DD V KP +RE+ ARV Sbjct: 79 EVAKSIRKTSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTDL 138 Query: 114 ---AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + + G + + D + GE L RE +L +L ++ G+ + + Sbjct: 139 VSVDSQESDEKKTQPLQIGDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHIGQVITR 198 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223 + ++G +D + V+ I +LR+K+ + + + ++R +GY + N Sbjct: 199 EHLLETVWG-YDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 251 >gi|158425656|ref|YP_001526948.1| phosphate regulon transcriptional regulatory protein [Azorhizobium caulinodans ORS 571] gi|158332545|dbj|BAF90030.1| phosphate regulon transcriptional regulatory protein [Azorhizobium caulinodans ORS 571] Length = 233 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 51/226 (22%), Positives = 95/226 (42%), Gaps = 8/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + +G +++ + E + D+ ++ L G + Sbjct: 5 ILIIEDEEPLTLLLRYNLESEGYAVDNVGRGDEAETRLRESVPDLVILDWML--PGLSGI 62 Query: 62 ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IY 116 EL R +R + P+I ++ + +G DD V KP E+LARV A Sbjct: 63 ELCRRLRTRPETERLPVIMLTARGEETERVRGLATGADDYVVKPFSVPELLARVRALLRR 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + G I + + G L E R+LE+LM + G+ ++ Q+ Sbjct: 123 AKPEHVATLLRAGDIELDRETHRVHRSGREVHLGPTEFRLLEFLMQSPGRVFSREQLLDG 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 ++G D ++E V+ H+ +LRK + DP+ + R GYS + Sbjct: 183 VWGQ-DVYIDERTVDVHVGRLRKAINRGRQPDPIRTVRGAGYSFNE 227 >gi|78213892|ref|YP_382671.1| two component transcriptional regulator [Synechococcus sp. CC9605] gi|78198351|gb|ABB36116.1| two component transcriptional regulator, winged helix family [Synechococcus sp. CC9605] Length = 259 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 43/228 (18%), Positives = 90/228 (39%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++ G ++ L + D+ ++ Sbjct: 22 ILVVDDEASIRRILETRLSMIGYNVVTACDGTEALELFPTCTPDLVVLDVM--MPKLDGY 79 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA------- 114 + + +R S VP++ ++ + + + G DD V KP +E+ AR+ Sbjct: 80 GVCQELRKESDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCLLRRVEK 139 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 ++ + +R+ ++ R E L E +LE L++ G+ + +I Sbjct: 140 EQVAGIPNSGVIQVSDLRIDTNKRQVFRGDERIRLTGMEFSLLELLVSRSGEPFNRGEIL 199 Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 ++G + V+ VV+ HIS+LR KL + + + + R GY Sbjct: 200 KEVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGYLF 247 >gi|307151193|ref|YP_003886577.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 7822] gi|306981421|gb|ADN13302.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7822] Length = 224 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 46/221 (20%), Positives = 91/221 (41%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A + +G ++ + D+ ++ L G L Sbjct: 5 ILVVEDEAKLAQFIELELKYEGYTVTVAPDGLAGLTAARESHPDLILLDWML--PGISGL 62 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ + +R P+I ++ + + D+G DD + KP E+LARV A RR + Sbjct: 63 EICKRLRQTGDKVPIILLTAKDEISDRVTGLDAGADDYIVKPFSLEELLARVRANLRRTQ 122 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEV-FPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 N + + L +E +LEYLM++ + + + QI ++G Sbjct: 123 EENPEEILFNDLRLNRSTREVYRANRLIELTAKEFELLEYLMSHPRQVLTRDQILERVWG 182 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D + N++E ++ LR KL + + R +GY + Sbjct: 183 -YDFMGDSNIIEVYVRYLRLKLEENGEKRLIQTIRGVGYVL 222 >gi|262282637|ref|ZP_06060405.1| response regulator [Streptococcus sp. 2_1_36FAA] gi|262261928|gb|EEY80626.1| response regulator [Streptococcus sp. 2_1_36FAA] Length = 233 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 53/232 (22%), Positives = 101/232 (43%), Gaps = 13/232 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + + + D+ ++ L L Sbjct: 4 ILVVDDEKPISDIIKFNMVKEGYEVVTAFDGREALEMFEAENPDILILDLML--PELDGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR S VP+I +S S + + G DD V KP +RE+ ARV AI RR + Sbjct: 62 EVARTIRKTSNVPIIVLSAKDSEFDKVIGLEIGADDYVTKPFSNRELQARVKAILRRSEF 121 Query: 122 SNNRAETGPI---------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + E+ ++ D + GE L RE +L +L ++ G+ + + Sbjct: 122 AVDTQESEKGSNELTVGELQILPDAFVAKKHGEELELTHREFELLYHLASHVGQVMTREH 181 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223 + ++G +D + V+ I +LR+K+ + + + ++R +GY + N Sbjct: 182 LLETVWG-YDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 232 >gi|229032673|ref|ZP_04188636.1| Two-component response regulator vanRB [Bacillus cereus AH1271] gi|228728672|gb|EEL79685.1| Two-component response regulator vanRB [Bacillus cereus AH1271] Length = 247 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 44/224 (19%), Positives = 99/224 (44%), Gaps = 11/224 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D +++ +++ + L D+ ++ L Sbjct: 30 ILVIEDNPDIQELIREFLMAQNFTVDVVGAGTEGILLFQKNSYDLVLLDVML--PDIDGY 87 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYR 117 + +I+R S VP+I ++ + ++ + F+ G+DD + KP H+ + RV Sbjct: 88 SICKIMRGQSDVPIIMLTGLHNEESEIKGFELGIDDYITKPFHYTVFIKRVEAVLRRAAT 147 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + + + + S V G L +E I+ L+ NRGK ++++ + + + Sbjct: 148 KEAETATILQFHELMLNSTAYAAYVHGNQIELTTKEFEIIYTLLQNRGKVLSRSDLLNKV 207 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +G ++ + V+++HI LRKKL G + + + +GY I+ Sbjct: 208 WG-YEHYGDVRVIDTHIKNLRKKL----GIPYIKTVKGIGYKIE 246 >gi|307708758|ref|ZP_07645220.1| DNA-binding response regulator [Streptococcus mitis NCTC 12261] gi|307615124|gb|EFN94335.1| DNA-binding response regulator [Streptococcus mitis NCTC 12261] Length = 235 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 48/234 (20%), Positives = 96/234 (41%), Gaps = 15/234 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + + + + D+ ++ L L Sbjct: 4 ILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILDLML--PEIDGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-------- 113 E+ + IR S VP+I +S S + + G DD V KP +RE+ ARV Sbjct: 62 EVAKTIRKTSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTDL 121 Query: 114 ---AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + + G + + D + GE L RE +L +L ++ G+ + + Sbjct: 122 VSVDNQESDEKKTQPLQIGDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHIGQVITR 181 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223 + ++G +D + V+ I +LR+K+ + + + ++R +GY + N Sbjct: 182 EHLLETVWG-YDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 234 >gi|256377936|ref|YP_003101596.1| two component transcriptional regulator, winged helix family [Actinosynnema mirum DSM 43827] gi|255922239|gb|ACU37750.1| two component transcriptional regulator, winged helix family [Actinosynnema mirum DSM 43827] Length = 227 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 53/221 (23%), Positives = 98/221 (44%), Gaps = 6/221 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D A ++ D+G ++ S E L DV ++ L G L Sbjct: 6 LMVEDDAHIRQALGLALEDEGFAVSEAVSGEQALALLDRRAFDVVLLDLML--PGVDGLH 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRLK 120 + R++R+ +P+I ++ + + ++G DD V KP+ + AR+ A Sbjct: 64 VCRVLRSRGDLPVIVVTARADAEDVIAGLEAGADDYVTKPLVAAVLAARIRALLRRSGGA 123 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + G + V D R GE L R E R+L L+A G+ V + Q+ + ++G Sbjct: 124 AQADELRAGDLVVRQDNRTAHRAGEQVHLTRTEFRLLVELLAAEGRVVTREQLLNRVWG- 182 Query: 181 FDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 +D + +++ HI +LR+K+ V + R GY I Sbjct: 183 YDYFGDTRLLDVHIRRLRRKVEPDPDTPALVLTVRGSGYRI 223 >gi|322806233|emb|CBZ03801.1| two-component response regulator [Clostridium botulinum H04402 065] Length = 221 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 95/224 (42%), Gaps = 10/224 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + + G +E + D+ ++ L Sbjct: 5 ILVVEDDFDIHTIISEVLKESGYLVEVATDGLIAVEMFRRGNFDLIILDVML--PKIDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 + IIR S VP+I ++ + + F+ VDD + KP ++ RV Sbjct: 63 VVCEIIRKESSVPIIMLTALGEEEDEMKGFELKVDDYITKPFSISLLIKRVEAVLRRANG 122 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 L+ +N+ I ++ V + L +E +ILE L++N G+ ++ + + I+ Sbjct: 123 LEENNSTLTFEEITIYPSNYKTLVNNKEIELTYKEFQILEILISNVGRVFSRESLLNQIW 182 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 G +D + V+++HI LR+KL D + + R +GY I+ Sbjct: 183 G-YDYFGDTRVIDTHIKNLRQKL----NIDYIKTIRGVGYKIEK 221 >gi|312880968|ref|ZP_07740768.1| two component transcriptional regulator, winged helix family [Aminomonas paucivorans DSM 12260] gi|310784259|gb|EFQ24657.1| two component transcriptional regulator, winged helix family [Aminomonas paucivorans DSM 12260] Length = 235 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 46/228 (20%), Positives = 90/228 (39%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + D G +E + + + D+ ++ L Sbjct: 6 ILVVEDERSIADLVAEALRRQGYRVETAGDGDQALEVAETTLPDLVILDLML--PKLDGW 63 Query: 62 ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 E+ R +R ++P+I ++ + + + G DD + KP E+LARV A R Sbjct: 64 EVCRRLREEETTRRIPIIMLTARRDEKDVVAGLELGADDYLRKPFSLAELLARVKAHLRA 123 Query: 119 LKVSNNRAETGPIRVFSDGRDPEV---QGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 E + + G L E R+LE L+ +G+ V++ ++ + Sbjct: 124 RAQDALGDEGIAVGPLTLEPRSGEVLLDGTPLDLSPVEYRLLETLVRGKGRLVSREELLA 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDW 222 ++G A + V+ HI +LR+K+ V + R GY + W Sbjct: 184 KVWGY--VAGDTRTVDVHIFRLRRKIEPDPEHPRLVHTVRGRGYRLLW 229 >gi|228919194|ref|ZP_04082567.1| Two-component response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|229176851|ref|ZP_04304250.1| Two-component response regulator [Bacillus cereus 172560W] gi|229188529|ref|ZP_04315571.1| Two-component response regulator [Bacillus cereus ATCC 10876] gi|228594957|gb|EEK52734.1| Two-component response regulator [Bacillus cereus ATCC 10876] gi|228606633|gb|EEK64055.1| Two-component response regulator [Bacillus cereus 172560W] gi|228840472|gb|EEM85740.1| Two-component response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 233 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 46/230 (20%), Positives = 88/230 (38%), Gaps = 11/230 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ ++G + E L + ++ + Sbjct: 6 ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIM--MPKVDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + +R ++P+I +S + +G DD V KP + E++AR+ + RR Sbjct: 64 HMCMKVREAKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMK 123 Query: 122 SNNRAETG-------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N A +++ V GE L RE ILE L N G + QI+ Sbjct: 124 MNGFAIQNEDELEIGEMKINISTHKVIVDGEEVKLTPREFSILELLARNPGMVFSAEQIY 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223 ++ +N V HI K+R+K+ + + +GY I+ + Sbjct: 184 EKVWNERSFQ-SDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGYKIEKD 232 >gi|148241349|ref|YP_001226506.1| two-component system response regulator [Synechococcus sp. RCC307] gi|147849659|emb|CAK27153.1| Two-component system response regulator [Synechococcus sp. RCC307] Length = 252 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 40/229 (17%), Positives = 86/229 (37%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++ G ++ E D+ ++ Sbjct: 14 ILVVDDEASIRRILETRLSMIGYNVVTAADGEEALEAFHREPTDLVVLDVM--MPKLDGY 71 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI--------HHREILARVA 113 + + +R S VP++ ++ + + + G DD V KP + Sbjct: 72 GVCQELRKESDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRVEK 131 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 ++ + +++ ++ R GE L E +LE L++ G+ ++ +I Sbjct: 132 EHGGGSIPNSGVIQVSDLKIDTNKRQVYRAGERIRLTGMEFSLLELLVSRSGEPFSRGEI 191 Query: 174 FSAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 ++G + V+ VV+ HIS+LR KL + + + + R GY Sbjct: 192 LKDVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGYLF 240 >gi|56962949|ref|YP_174676.1| two-component response regulator [Bacillus clausii KSM-K16] gi|56909188|dbj|BAD63715.1| two-component response regulator [Bacillus clausii KSM-K16] Length = 233 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 45/230 (19%), Positives = 79/230 (34%), Gaps = 13/230 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD + D +G S+ + + + D+ ++ Sbjct: 6 ILIADDEEEIADLLAIHLEKEGYSVAKAADGQEAIHIVETQPIDLLILDIM--MPKMDGY 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH---------REILARV 112 E+ R IR +P+I +S S + G DD + KP + Sbjct: 64 EVTRRIRETHNMPIIFLSAKTSDFDKVHGLVIGADDYITKPFTPIELVARVNAQLRRFMK 123 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 R R + + + + R + GE L +E IL L ++ K + Sbjct: 124 LNQPRTAVDPKTRLDYRGLVISLEQRTVTLYGENIELTPKEFDILYLLASHPKKVFSVEN 183 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221 IF ++G N V HI LRKKL D + + +GY+ + Sbjct: 184 IFKQVWGEAYFEG-ANTVMVHIRTLRKKLEEDKRKDKWIKTVWGVGYAFN 232 >gi|325662837|ref|ZP_08151406.1| hypothetical protein HMPREF0490_02146 [Lachnospiraceae bacterium 4_1_37FAA] gi|331086560|ref|ZP_08335638.1| hypothetical protein HMPREF0987_01941 [Lachnospiraceae bacterium 9_1_43BFAA] gi|325470889|gb|EGC74118.1| hypothetical protein HMPREF0490_02146 [Lachnospiraceae bacterium 4_1_37FAA] gi|330410393|gb|EGG89825.1| hypothetical protein HMPREF0987_01941 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 229 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 47/227 (20%), Positives = 91/227 (40%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + D G +E N E + + D+ ++ L G Sbjct: 4 ILIVEDEETIADLERDYLELSGFEVEVANDGETGLEKALTDQFDLVILDLML--PGVDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 E+ R +R P+I +S + G DD + KP E++ARV A R + Sbjct: 62 EICREVRQKKNTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARYER 121 Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 +N+ E +++ + R V GE +E +L +L + K ++F Sbjct: 122 LIGSNVQTNDIIEIRGLKIDTTARRVWVNGEEKAFTTKEFDLLTFLAGHPNHVYTKDELF 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 S I+ + + + V HI K+R+K+ + +++ +GY Sbjct: 182 SEIWDM-ESIGDIATVTVHIKKIREKIEYDTSKPQYIETIWGVGYRF 227 >gi|29830590|ref|NP_825224.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29607702|dbj|BAC71759.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 243 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 44/228 (19%), Positives = 88/228 (38%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V++ +G E ++ + D+ ++ L Sbjct: 13 ILIVDDEPAVREALQRSLAFEGYDTEVAVDGADALEKATAYQPDLVVLDI--QMPRMDGL 70 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL--------ARV 112 R IR A + P++ ++ ++ + D+G DD + KP E+ Sbjct: 71 TAARRIRGAGTTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSS 130 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 A ++ G +R+ R+ G L R E +LE +A+ + + + Q Sbjct: 131 YAATAVGVPEDDALTFGDLRMDLATREVTRGGRSVELIRTEFTLLEMFLAHPRQVLTREQ 190 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I A++G FD N ++ ++ LR+K V + R +GY + Sbjct: 191 ILKAVWG-FDFEPSSNSLDVYVMYLRRKTEAGGEPRLVHTVRGVGYVL 237 >gi|300857676|ref|YP_003782659.1| two-component system transcriptional regulatory protein [Corynebacterium pseudotuberculosis FRC41] gi|300685130|gb|ADK28052.1| two-component system transcriptional regulatory protein [Corynebacterium pseudotuberculosis FRC41] gi|302205415|gb|ADL09757.1| Putative two component system response regulator [Corynebacterium pseudotuberculosis C231] gi|302329969|gb|ADL20163.1| Putative two component system response regulator [Corynebacterium pseudotuberculosis 1002] gi|308275653|gb|ADO25552.1| Putative two component system response regulator [Corynebacterium pseudotuberculosis I19] Length = 231 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 52/230 (22%), Positives = 94/230 (40%), Gaps = 13/230 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + D L +G + D+ ++ L G Sbjct: 4 ILLVEDEESLADPLAFLLRKEGFEVVVAGDGPTALVEFEKNDIDIVLLDLML--PGMSGT 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + +R S VP+I ++ S + + G DD V KP RE++AR+ A+ RR Sbjct: 62 DVCKRLRKVSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGE 121 Query: 122 SNNRAETG---------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 +R+ + V GE +P +E +LEYLM N G+ + + Q Sbjct: 122 PQVADYEEEGDDILGGGRVRMDVERHTVTVAGENISMPLKEFDLLEYLMRNSGRVLTRGQ 181 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221 + I+G D + ++ H+ +LR K+ + + R LGY + Sbjct: 182 LIDRIWGA-DYVGDTKTLDVHVKRLRSKIEEEPSSPKHLVTVRGLGYKFE 230 >gi|229542343|ref|ZP_04431403.1| two component transcriptional regulator, winged helix family [Bacillus coagulans 36D1] gi|229326763|gb|EEN92438.1| two component transcriptional regulator, winged helix family [Bacillus coagulans 36D1] Length = 236 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 46/229 (20%), Positives = 93/229 (40%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G ++ E + D+ ++ L + Sbjct: 5 ILVVDDEKPIADILQFNLTKEGYTVYCAYDGEEALEKVEEVQPDLIVLDIML--PKRDGM 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R +P+I ++ S + + G DD V KP RE++ARV A RR + Sbjct: 63 EVCREVRKKYNMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHQQ 122 Query: 122 SNNRAETGPIRV---------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + D +GE L RE +L YL + G+ + + Sbjct: 123 TPAAPGEEEESNEIAIGSLVIHPDAYVVSKRGETIELTHREFELLHYLAKHIGQVMTREH 182 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + ++G +D + V+ + +LR+K+ + + + ++R +GY + Sbjct: 183 LLETVWG-YDYYGDVRTVDVTVRRLREKVEDNPSHPEWIVTRRGVGYYL 230 >gi|84393908|ref|ZP_00992650.1| Response regulator [Vibrio splendidus 12B01] gi|86145558|ref|ZP_01063888.1| Response regulator [Vibrio sp. MED222] gi|218708602|ref|YP_002416223.1| DNA-binding response regulator PhoB [Vibrio splendidus LGP32] gi|84375458|gb|EAP92363.1| Response regulator [Vibrio splendidus 12B01] gi|85836529|gb|EAQ54655.1| Response regulator [Vibrio sp. MED222] gi|218321621|emb|CAV17573.1| DNA-binding response regulator PhoB [Vibrio splendidus LGP32] Length = 229 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 36/222 (16%), Positives = 89/222 (40%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D A +++ + G + D+ ++ L G G Sbjct: 5 ILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDTAVNKLCEPFPDLVLLDWMLPGGSGINF 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ + +P++ ++ + + + G DD + KP +E++AR+ A+ RR+ Sbjct: 65 IKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIRRVT 124 Query: 121 VSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + ++ + E ++L + M ++ + ++ Q+ + ++ Sbjct: 125 PTALEDVIDVQGLKLDPVSHRVTASEGPVDMGPTEFKMLHFFMTHQERVYSREQLLNNVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G + VE+ V+ HI +LRK L + + + R GY Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALESAGHDKLIQTVRGAGYRF 225 >gi|307941515|ref|ZP_07656870.1| phosphate regulon transcriptional regulatory protein PhoB [Roseibium sp. TrichSKD4] gi|307775123|gb|EFO34329.1| phosphate regulon transcriptional regulatory protein PhoB [Roseibium sp. TrichSKD4] Length = 230 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 53/224 (23%), Positives = 97/224 (43%), Gaps = 8/224 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + +G +E + + + D+ ++ L G +E Sbjct: 5 LIVEDEEPLSLLLKYNLEAEGYQVEVCARGDEADLRLRESLPDLLLLDWML--PGLSGIE 62 Query: 63 LPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L R IR + +P+I ++ + +G DD V KP E++ARV AI RR Sbjct: 63 LCRRIRGREETALLPVIMLTARGEESERIRGLSTGADDYVVKPFSVPELMARVRAILRRA 122 Query: 120 KVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 +G I + + + L E R+LE+LM + G+ ++ Q+ + Sbjct: 123 SPEVVSNLLRSGDIELDRETHRVRRSSKEIHLGPTEFRLLEFLMTSPGRVYSREQLLDGV 182 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +G D V+E V+ H+ +LRK L DP+ + R GY+ + Sbjct: 183 WG-HDVYVDERTVDVHVGRLRKALNRGKAKDPIRTVRGAGYAFN 225 >gi|225414512|ref|ZP_03761701.1| hypothetical protein CLOSTASPAR_05735 [Clostridium asparagiforme DSM 15981] gi|225041976|gb|EEG52222.1| hypothetical protein CLOSTASPAR_05735 [Clostridium asparagiforme DSM 15981] Length = 243 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 48/227 (21%), Positives = 98/227 (43%), Gaps = 9/227 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD ++ + +G S + L + + D+ ++ + G + + Sbjct: 17 LIVDDDPAIRKLLTKVVEGNGFKSMTAASGQEAVALAQNRKFDLILLDIMMNG-VDDGFD 75 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 R +RA P++ +S TL D G DD + KP + + A++ A+ RR K Sbjct: 76 AIRSLRATGNDIPIVILSGRTEDFDTLYGLDIGADDYITKPFNPVVLGAKIKALIRRNKK 135 Query: 122 SNNRAETG----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + A P R + + ++ PL +E +++ ++N G+ K Q++ + Sbjct: 136 AAYNAHNFITAGPFRYSNMTLEFFKNEQLIPLSSKENVMMKLFISNVGRVFTKEQLYELV 195 Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223 +G + V+EN + +IS LR K+ + + + LGY N Sbjct: 196 WG--NSIVDENAIMVYISHLRNKIEDNPKSPRYIKTVWGLGYKFTVN 240 >gi|169631126|ref|YP_001704775.1| sensory transduction protein RegX3 [Mycobacterium abscessus ATCC 19977] gi|169243093|emb|CAM64121.1| Sensory transduction protein RegX3 [Mycobacterium abscessus] Length = 228 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 57/226 (25%), Positives = 101/226 (44%), Gaps = 10/226 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + D L +G N A D+ ++ L G + Sbjct: 5 LIVEDEDSLADPLAFLLRKEGFEATIVNDGPSALAEFERAGADIVLLDLML--PGMSGTD 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + +RA S VP+I ++ S + + G DD V KP RE++AR+ A+ RR S Sbjct: 63 VCKQLRAKSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGSDS 122 Query: 123 NNRAETG------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 A P+R+ D V GE LP +E +LEYL+ N G+ + + Q+ Sbjct: 123 EETASGDGVLEAGPVRMDVDRHTVSVNGEAITLPLKEFDLLEYLIRNSGRVLTRGQLIDR 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 ++G D + ++ H+ +LR K+ + + + R LGY ++ Sbjct: 183 VWGA-DYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVRGLGYKLE 227 >gi|153852896|ref|ZP_01994333.1| hypothetical protein DORLON_00315 [Dorea longicatena DSM 13814] gi|149754538|gb|EDM64469.1| hypothetical protein DORLON_00315 [Dorea longicatena DSM 13814] Length = 224 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 49/225 (21%), Positives = 96/225 (42%), Gaps = 8/225 (3%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEK 59 M ++D +++ + G GF + ++ ++ L G G + Sbjct: 1 MIFCVEDDGNIRELVVYTLESTGFQARGFEDGSSFLEALALETPELVLLDIMLPGEDGME 60 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAI 115 +L + + +P+I ++ + + D+G DD V KP E+++R+ Sbjct: 61 LLRKLKASKKTKDIPVIMVTAKGAEYDKVKGLDAGADDYVTKPFGMMELISRIKAVLRRS 120 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + S + E G IR+ + V GEV L +E +L+ LM N + + Q+ Sbjct: 121 AKGSVSSEDTFEIGEIRLDPKKHEVTVHGEVVNLTLKEYELLKRLMKNSNIVLTRDQLLE 180 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I+G +D E V+ H+ LR+KL + +++ R +GY + Sbjct: 181 DIWG-YDFDGETRTVDVHVRTLRQKLGDAGEQ--IETVRGVGYRM 222 >gi|65319271|ref|ZP_00392230.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bacillus anthracis str. A2012] Length = 234 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 36/222 (16%), Positives = 94/222 (42%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ +G + + D+ ++ Sbjct: 14 ILIVDDDPHIRELVSVFLECEGFQTYEAIDGLDALQKINQVKVDMVILDIM--MPNMDGF 71 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ +R + +P++ ++ + F G DD + KP E++ RV A+ +R ++ Sbjct: 72 DVCFELRKYYDIPILILTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 131 Query: 122 SNNRAETGPIR-VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + +++ + + + + LP +E +L L + G+ ++ Q+ ++G Sbjct: 132 TVSQSIQVGTVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG- 190 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D E ++ HI++LR+K + + + + R LGY ++ Sbjct: 191 YDFEGNERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLEV 232 >gi|218779275|ref|YP_002430593.1| two component transcriptional regulator, winged helix family [Desulfatibacillum alkenivorans AK-01] gi|218760659|gb|ACL03125.1| two component transcriptional regulator, winged helix family [Desulfatibacillum alkenivorans AK-01] Length = 228 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 54/224 (24%), Positives = 90/224 (40%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +++DD + + +G + +S E + D+ ++ L G G +V Sbjct: 6 ILIVDDEEDILELLKFNLEREGFKIFCADSGEKALEAVKNFSPDLVLLDLMLPGIDGLEV 65 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + + S +P+I ++ + + G DD V KP R I+ARV A+ RR Sbjct: 66 ARVLKSKPNTSTIPIIMLTAKGDESDVVRGLELGADDYVTKPFSPRVIIARVRAVMRRNA 125 Query: 121 VSNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + R+ V G+ L E IL YL G ++QI SA Sbjct: 126 AEPDDGIQAREVHGIGIHPGRREVAVNGKQIKLTMSEFDILHYLAQRPGWVFTRSQIVSA 185 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + G AV + V+ I LRKKL +++ R +GY + Sbjct: 186 VRGEG-FAVTDRSVDVQIVGLRKKLGASG--KVIETVRGVGYRL 226 >gi|221134917|ref|ZP_03561220.1| putative DNA-binding response regulator PhoB [Glaciecola sp. HTCC2999] Length = 228 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 37/224 (16%), Positives = 86/224 (38%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D A +++ + G ++ + D+ ++ L G + Sbjct: 5 ILLVEDEAPIREMIKIILEQAGFTVNEAEDFDIALDKMVEPYPDLVLLDWML--PGGSGV 62 Query: 62 ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIY 116 +L R + H ++P+I ++ + D+G DD + KP +E+ + Sbjct: 63 QLARKFKEHEFTREIPVILLTARGEEDDKIRGLDAGADDYITKPFSPKELVARIKAVMRR 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + G + E ++L + M++ + ++ Q+ Sbjct: 123 VTPTAKEEPIHFSGLVLDPISHRVTANGVSIEMGPTEFKLLHFFMSHAERVYSREQLLDN 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + VE+ V+ HI +LRK L ++ + + R GY Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALESQGYDAMIQTVRGAGYRF 225 >gi|323704302|ref|ZP_08115881.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium xylanolyticum LX-11] gi|323536368|gb|EGB26140.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium xylanolyticum LX-11] Length = 229 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 44/224 (19%), Positives = 95/224 (42%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD + + + + + + + + D+ ++ L E Sbjct: 4 ILVCDDERSILNMLKMVLEKEKYEVICAENGKDVIEVLKKQIPDLIILDVML--PDESGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 ++ + I +VP+I ++ + + + G DD V KP RE++ARV Sbjct: 62 DILKKIVPLYKVPIIMLTAKNDIVDKVIGLEFGADDYVTKPFDTRELIARVKALLRRIEE 121 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 +K + N G + V D + +G++ L +E +L+ L+ +G + + ++ ++ Sbjct: 122 VKANKNFCTFGDLIVNFDQGIVKKRGKIINLTPKEFVLLKVLIDAKGNVLTREELLDKVW 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 G +D + VV+ HI +LRKK+ + + + GY D Sbjct: 182 G-YDYYGDTRVVDIHILRLRKKIEDDTQSPRYIRTVYGFGYKFD 224 >gi|283798568|ref|ZP_06347721.1| DNA-binding response regulator SrrA [Clostridium sp. M62/1] gi|291073696|gb|EFE11060.1| DNA-binding response regulator SrrA [Clostridium sp. M62/1] gi|295092881|emb|CBK78988.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Clostridium cf. saccharolyticum K10] Length = 225 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 47/222 (21%), Positives = 100/222 (45%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ G + E + + D++ I ++ Sbjct: 6 ILVVDDEPRMRKLVKDFLTVKGFQVVEAGDGEEAIDIFFEQK-DIALILLDVMMPKMDGW 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120 E+ + IR +SQVP++ ++ Q L F GVD+ ++KP + ++ARV AI R Sbjct: 65 EVLKTIRKYSQVPILMLTARGEEQDELQGFKLGVDEYISKPFSPKILVARVEAILRRSSP 124 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + + G I + E+ G+ L +E ++ Y N+G +++ +I + ++ Sbjct: 125 GAKDVIDVGGIHIDKTAHQVEIDGKPVDLSYKEFELMTYFAENQGIALSREKILNNVW-N 183 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D + +++H+ KLR KL K + + + +GY + Sbjct: 184 YDYFGDARTIDTHVKKLRSKLGEKG--EYIKTIWGMGYKFEV 223 >gi|172041120|ref|YP_001800834.1| two-component system response regulator [Corynebacterium urealyticum DSM 7109] gi|171852424|emb|CAQ05400.1| two-component system response regulator [Corynebacterium urealyticum DSM 7109] Length = 227 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 54/226 (23%), Positives = 95/226 (42%), Gaps = 9/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + D L +G + + D+ ++ L G Sbjct: 4 ILLVEDEESLSDPLSYLLEREGYDVSIAEDGLKAVEMFELHGADIILLDLML--PGLPGT 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-----ILARVAAIY 116 E+ R IRA S VP+I ++ + + + G DD V KP RE Sbjct: 62 EVCRAIRAKSMVPIIMLTAKDTEIDKVVGLELGADDYVTKPYSSRELLARIRAVLRRGQA 121 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + S+N E G +RV D V+GE LP +E +LE L+ N G+ + + Q+ Sbjct: 122 QGSEGSSNVLEAGGVRVDVDRYVVTVRGEDMQLPLKEFELLEMLVRNAGRVMTREQLIDR 181 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 ++G D + ++ H+ +LR K+ + + + R LGY + Sbjct: 182 VWG-SDYVGDTKTLDVHVKRLRTKIEENPSKPELLVTLRGLGYKFN 226 >gi|111221078|ref|YP_711872.1| response regulator in two-component regulatory system [Frankia alni ACN14a] gi|111148610|emb|CAJ60283.1| response regulator in two-component regulatory system [Frankia alni ACN14a] Length = 244 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 49/225 (21%), Positives = 89/225 (39%), Gaps = 10/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD ALV + + G ++ + D+ ++ L G LE Sbjct: 5 LVVDDDALVAEVVDRYLRNAGFDVDRAADGPSALRTAEARPPDLVVLDLML--PGLDGLE 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R + A VP+I ++ + + G DD V KP RE+ RV ++ RR + Sbjct: 63 VFRRLTARRPVPVIMLTARADEADRITGLEVGADDYVTKPFSPRELTLRVRSVLRRAAEA 122 Query: 123 NNRAETGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 E G +R V R L RE +L +L+ G + ++ + Sbjct: 123 AAAPEPGVLRAGALVVDPAARTATRHEVPLGLTVREFDLLAFLLRRPGHAFTRVELLEQV 182 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 +G + + V HI +LR+K+ + + + +GY D Sbjct: 183 WGW--SYGDPSTVTVHIRRLREKIEDDPTAPRLLVTVWGVGYRYD 225 >gi|254477021|ref|ZP_05090407.1| phosphate regulon transcriptional regulatory protein PhoB [Ruegeria sp. R11] gi|214031264|gb|EEB72099.1| phosphate regulon transcriptional regulatory protein PhoB [Ruegeria sp. R11] Length = 229 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 48/221 (21%), Positives = 89/221 (40%), Gaps = 4/221 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61 ++++D ++ DG + + E + D+ ++ + G +V Sbjct: 9 LVVEDELAQREVLAYNLEADGFRVLRAENGEEALLIVEEDTPDIIVLDWMMPNLSGIEVC 68 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + +P+I +S + ++G DD V KP E++ARV RR++ Sbjct: 69 RRLKSRTETRNIPIIMLSARSEEVDKVRGLETGADDYVVKPYSVVELMARVRTQLRRVRP 128 Query: 122 SNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S I + ++ L E R+L M G+ ++ Q+ ++G Sbjct: 129 STVGVRLEFDDIVLDAETHKVSRADTQLKLGPTEFRLLSTFMEKPGRVWSREQLLDRVWG 188 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D V+ V+ HI +LRK L G DPV + R GY++ Sbjct: 189 R-DIYVDTRTVDVHIGRLRKALTQHGGSDPVRTVRGAGYAL 228 >gi|167630854|ref|YP_001681353.1| two-component response regulator resd [Heliobacterium modesticaldum Ice1] gi|167593594|gb|ABZ85342.1| two-component response regulator resd [Heliobacterium modesticaldum Ice1] Length = 240 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 45/235 (19%), Positives = 89/235 (37%), Gaps = 17/235 (7%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L++D ++ + + + + D+ ++ G Sbjct: 8 LLVEDEEKIRRMLRLFLEQEAFGVVEAEECRPALEILRQGQVDLVILDVM--MPGLDGWT 65 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 R IR S+VP++ ++ + F+ G DD V KP RE++ RV A+ RR + Sbjct: 66 TCRKIREFSEVPILFLTARGEESDRVLGFELGADDYVIKPFSPRELVLRVKALLRRRSST 125 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFP------------LPRRERRILEYLMANRGKRVAK 170 + + G L E +L YL N G+ +++ Sbjct: 126 PPQRDKAQEMTPEKGLHFPELSLYPEGRKAVVKGETLSLSPLEYDLLLYLAQNAGRVLSR 185 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSIDWN 223 + ++G ++ A + V++H+ +LR+KL + V + R GY + N Sbjct: 186 DLLLDRVWG-YEFAGDSRTVDTHVRRLREKLSRISPAVASYVGTVRGSGYKFEVN 239 >gi|161503820|ref|YP_001570932.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160865167|gb|ABX21790.1| hypothetical protein SARI_01907 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 226 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 46/219 (21%), Positives = 92/219 (42%), Gaps = 3/219 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D + + G ++ L + ++ L G Sbjct: 3 ILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALREHYSLIILDIML--PGLDGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R +R Q P+I ++ S++ + ++G +D + KP E+LARV A R+ Sbjct: 61 QVLRALRTAHQTPVIYLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHVS 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 R + + + + + L R+E +L L + G+ V +T I S ++G+ Sbjct: 121 VFTRLSINGLDMDATRQSVSRNKKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWGI- 179 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + E N V+ I +LR K+ + + + R +GY + Sbjct: 180 NFDSETNTVDVAIRRLRAKVDDPFEKKLITTVRGMGYRL 218 >gi|157693907|ref|YP_001488369.1| response regulator [Bacillus pumilus SAFR-032] gi|157682665|gb|ABV63809.1| response regulator [Bacillus pumilus SAFR-032] Length = 228 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 45/224 (20%), Positives = 92/224 (41%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + G + N+ D+ ++ Sbjct: 7 ILIVDDEFDMLELIGSFLRRQGFHIITANNGMEALRQLEKEPVDLVVLDIM--MPDMDGF 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118 E+ + IR SQ+P++ ++ + + + G DD + KP RE + R Sbjct: 65 EVCQRIRQTSQIPILFLTARSYEEDRIKGLEIGADDYIMKPFSLRELAARIETTLRRIRG 124 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 L + +R + G + + DGR + E L RRE +L +L+ N+G+ ++ Q++ ++ Sbjct: 125 LSLKRSRIQFGDMEIDQDGRQVYILQEPINLTRREFDLLMFLLLNQGQVFSREQLYQKLW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + V++HI LR KL K + + +GY + Sbjct: 185 ESHSTSGSLRTVDTHIKTLRLKL--KGAERHIKTVWGVGYKFEE 226 >gi|149184842|ref|ZP_01863160.1| phosphate regulon response regulator [Erythrobacter sp. SD-21] gi|148832162|gb|EDL50595.1| phosphate regulon response regulator [Erythrobacter sp. SD-21] Length = 239 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 52/223 (23%), Positives = 104/223 (46%), Gaps = 4/223 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +L++D + + F ++G + + + L + D+ ++ + G G +V Sbjct: 16 LLLVEDDPALAELLEYRFANEGYDVRVTSDGDEALLLAAEDVPDLVILDWMIEGTSGIEV 75 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 R +A + VP+I ++ + + ++G DD + KP RE+LARVAA+ RR++ Sbjct: 76 CRRLRRDKATASVPIIMLTAREAEDDRIRGLETGADDYLTKPFSPRELLARVAAVMRRIR 135 Query: 121 VSNNRAETGPIR--VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + +G+ L E R+L++ M + G+ ++ Q+ ++ Sbjct: 136 PVLAGESIEVGDLALDPVAHKVTRRGKTLKLGPTEYRLLKFFMESPGRVFSRNQLLDGVW 195 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 G + +E V+ HI +LRK + + DPV + R GYS++ Sbjct: 196 GT-ESDIELRTVDVHIRRLRKAIEIEGAKDPVRTVRSAGYSLE 237 >gi|326778385|ref|ZP_08237650.1| two component transcriptional regulator, winged helix family [Streptomyces cf. griseus XylebKG-1] gi|326658718|gb|EGE43564.1| two component transcriptional regulator, winged helix family [Streptomyces cf. griseus XylebKG-1] Length = 245 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 46/230 (20%), Positives = 92/230 (40%), Gaps = 14/230 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V++ +G + + + D+ ++ L Sbjct: 11 ILIVDDEPAVREALQRSLAFEGYGTQVAVDGYDALAMAEAYAPDLIVLDI--QMPRMDGL 68 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 R IRA S P++ ++ ++ + D+G DD + KP E+ AR+ A+ RR Sbjct: 69 TAARRIRATGSTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSS 128 Query: 121 VSNNRAETGPI----------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + + A R+ R+ L R E +LE +++ + + + Sbjct: 129 YAASAAGADAPDDDVLSFADLRMDLATREVTRGERRVELTRTEFTLLEMFLSHPRQVLTR 188 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 QI A++G FD N ++ ++ LR+K V + R +GY++ Sbjct: 189 EQILKAVWG-FDFEPSSNSLDVYVMYLRRKTEAGGEPRLVHTVRGVGYAL 237 >gi|296394042|ref|YP_003658926.1| transcriptional regulator [Segniliparus rotundus DSM 44985] gi|296181189|gb|ADG98095.1| two component transcriptional regulator, winged helix family [Segniliparus rotundus DSM 44985] Length = 228 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 54/226 (23%), Positives = 102/226 (45%), Gaps = 10/226 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + D L +G + D+ ++ L G + Sbjct: 5 LIVEDEESLADPLAFLLRKEGFETVIAGDGPAALTEFDRSGADIVLLDLML--PGMGGND 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + +RA S VP+I ++ S + + G DD V KP RE+ AR+ A+ RR + + Sbjct: 63 VCKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELTARIRAVLRRGQEA 122 Query: 123 NNRAETG------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 ++ PI++ D V + LP +E +LEYLM NRG+ + + Q+ Sbjct: 123 DSETSAEGVLEAGPIKLDVDRHLVSVHSKHVTLPLKEFDLLEYLMRNRGRVLTRGQLIDR 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221 ++G D + ++ H+ +LR K+ + D + + R LGY ++ Sbjct: 183 VWGA-DYVGDTKTLDVHVKRLRSKIEDDPAKPDRLVTVRGLGYKLE 227 >gi|284992967|ref|YP_003411521.1| winged helix family two component transcriptional regulator [Geodermatophilus obscurus DSM 43160] gi|284066212|gb|ADB77150.1| two component transcriptional regulator, winged helix family [Geodermatophilus obscurus DSM 43160] Length = 226 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 54/224 (24%), Positives = 100/224 (44%), Gaps = 8/224 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D D + +G N+ DV ++ L G E Sbjct: 5 LVVEDEESFSDALSYMLRKEGFDAVVANNGPEALAEFERGGADVVLLDLML--PGLPGTE 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +R+ S VP+I ++ + + + G DD V KP RE++AR+ A+ RR Sbjct: 63 VCRQLRSRSSVPIIMLTAKDAEVDKVVGLELGADDYVTKPYSARELVARIRAVLRRRGDV 122 Query: 123 NNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 E+ GP+R+ + V GE LP +E +LE L+ N G+ + + Q+ ++ Sbjct: 123 EALVESALEAGPVRMDVERHVVSVDGEPVALPLKEFDLLELLLRNAGRVLTRVQLIDRVW 182 Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 G D + ++ H+ +LR K+ + + + R LGY ++ Sbjct: 183 G-SDYVGDTKTLDVHVKRLRAKIEPDPANPKYLVTVRGLGYKLE 225 >gi|88811179|ref|ZP_01126435.1| phosphate regulon response regulator PhoB [Nitrococcus mobilis Nb-231] gi|88791718|gb|EAR22829.1| phosphate regulon response regulator PhoB [Nitrococcus mobilis Nb-231] Length = 228 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 40/222 (18%), Positives = 84/222 (37%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D A +++ S+ +S E L D+ ++ L G Sbjct: 4 ILIVEDEAAIREMIAMALIRSDYSVHQADSGEAGLTLLDEIVPDLVLLDWMLPGMSGIDF 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118 + + VP+I ++ + + + G DD V KP RE+ + Sbjct: 64 ARRVKRHPTYRDVPIIMLTARGEEEDKIRGLEVGADDFVTKPFSPRELLARIKAVLRRAA 123 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + R E + + + + + E R+L + M + + ++ Q+ ++ Sbjct: 124 PLSGDERIEVKGLTLDPVAHRVWIGEDTLEIGPTEFRLLRFFMTHPERVFSRGQLLDHVW 183 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G + VEE V+ HI +LRK + + + + R GY Sbjct: 184 GT-NVYVEERTVDVHIRRLRKTIAGRGHDRLIQTVRGTGYRF 224 >gi|226310397|ref|YP_002770291.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226093345|dbj|BAH41787.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 231 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 87/228 (38%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + F +G ++ +S L + + ++ L G Sbjct: 5 ILIIEDETTIAQLERDYFELNGFQVDLCHSGSEGLPLAINGDYSLIIVDLQL--PGMDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR--------EILARVA 113 EL IR +VP++ +S + F+ G DD + KP + Sbjct: 63 ELCSQIRQVKEVPILIVSAKKEEIDKIRAFNLGADDYITKPFSPSELVARAKAHLTRYER 122 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 R+ + SN + + R V+ + RE +LE+L + + K ++ Sbjct: 123 LTARQAEPSNAEIHIRGLVIDKVSRRVYVRNQEVIFTTREFNLLEFLATHPNRVFNKNEL 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 F I+G+ D + + V HI KLR+K+ + +++ GY Sbjct: 183 FERIWGM-DSSGDIATVTVHIRKLREKIEVDPSNPQYIETVWGAGYRF 229 >gi|254380718|ref|ZP_04996084.1| two-component systen response regulator [Streptomyces sp. Mg1] gi|194339629|gb|EDX20595.1| two-component systen response regulator [Streptomyces sp. Mg1] Length = 243 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 42/224 (18%), Positives = 82/224 (36%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V+ +G + G ++ D ++ L Sbjct: 21 ILVVDDEPEVRAAVEDGLAVEGYEVRGAADGLAGLSQVAAWEPDAVVLDVM--MPVLDGL 78 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117 + R +RA P++ ++ S+ +D ++G DD + KP E++ARV Sbjct: 79 GVCRQLRAMGDRTPILVLTALDSVSERVDGLEAGADDYLVKPFALDELVARVRALLRRAA 138 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + R R E +LE L+ + G+ + + I + Sbjct: 139 PAPGGAAALGFADLVLDPATRTGRRGSRPLEFSRTEAALLELLVRHAGQVLPRELILELV 198 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +G D + N + +I LR+KL V + +GY +D Sbjct: 199 WGQ-DFGPDSNSLAVYIGYLRRKLEAGGEPRLVHTVHGVGYRLD 241 >gi|239827301|ref|YP_002949925.1| two component transcriptional regulator, winged helix family [Geobacillus sp. WCH70] gi|239807594|gb|ACS24659.1| two component transcriptional regulator, winged helix family [Geobacillus sp. WCH70] Length = 225 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 47/223 (21%), Positives = 89/223 (39%), Gaps = 8/223 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD ++ + S + E + + + DV I+ Sbjct: 7 LIVDDEEDMRFLVGMYLENANFSYLEAENGEEALQILKNNKVDVILIDVM--MPKMDGFT 64 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L IR S VP++ ++ + G DD + KP E++AR+ AI RR + Sbjct: 65 LCARIREQSDVPILFLTARGDEWDKVKGLKLGGDDYIVKPFSPGELIARIEAIMRRAYHN 124 Query: 123 NNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + E GR V G+ L +E +L +L + G+ ++ + + ++G Sbjct: 125 KQKNEDLSFGPLVIDERGRKVTVDGDPVVLTLKEFDLLLFLAKHHGQVFSREDLLAQVWG 184 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D V++HI LR KL+ D + + +GY + Sbjct: 185 -YDYTGNARTVDTHIKTLRMKLKQAS--DFIQTVWGIGYKFEV 224 >gi|157151157|ref|YP_001450078.1| response regulator [Streptococcus gordonii str. Challis substr. CH1] gi|157075951|gb|ABV10634.1| response regulator [Streptococcus gordonii str. Challis substr. CH1] Length = 233 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 53/232 (22%), Positives = 100/232 (43%), Gaps = 13/232 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + + + D+ ++ L L Sbjct: 4 ILVVDDEKPISDIIKFNMVKEGYEVVTAFDGREALEMFEAENPDILILDLML--PELDGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR S VP+I +S S + + G DD V KP +RE+ ARV AI RR + Sbjct: 62 EVARTIRKTSNVPIIVLSAKDSEFDKVIGLEIGADDYVTKPFSNRELQARVKAILRRSEF 121 Query: 122 SNNRAETGPI---------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + E ++ D + GE L RE +L +L ++ G+ + + Sbjct: 122 AVDTQENEKGSNELTVGELQILPDAFVAKKHGEELELTHREFELLYHLASHVGQVMTREH 181 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223 + ++G +D + V+ I +LR+K+ + + + ++R +GY + N Sbjct: 182 LLETVWG-YDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 232 >gi|329115001|ref|ZP_08243756.1| Phosphate regulon transcriptional regulatory protein PhoB [Acetobacter pomorum DM001] gi|326695444|gb|EGE47130.1| Phosphate regulon transcriptional regulatory protein PhoB [Acetobacter pomorum DM001] Length = 229 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 51/223 (22%), Positives = 91/223 (40%), Gaps = 6/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + G ++ E R D+ ++ L G L Sbjct: 6 LLVVEDDPALSRLIGYNLEKQGYAVRVVGDGESALEEVRQKRPDLLLLDWML--PGISGL 63 Query: 62 ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 E+ R +R + P++ +S T+ D+G DD + KP + ARV A+ RR Sbjct: 64 EVCRQLRGQPKTATLPIVMLSARGEETDTIRGLDTGADDYLVKPFSMEALFARVKAMLRR 123 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 L ++ + + E G + L E R+LE+ M N GK ++ ++ + Sbjct: 124 LPPADKTLRFDTLVMDRVSHKVERGGRLLALGPTEYRLLEFFMLNPGKVFSREELLKHAW 183 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 VE V+ HI +LR+ L D + + R GY++D Sbjct: 184 -ERSSFVELRTVDVHIRRLRQTLNEGDEQDIIRTVRARGYALD 225 >gi|228995640|ref|ZP_04155304.1| hypothetical protein bmyco0003_2410 [Bacillus mycoides Rock3-17] gi|228764114|gb|EEM12997.1| hypothetical protein bmyco0003_2410 [Bacillus mycoides Rock3-17] Length = 237 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 41/227 (18%), Positives = 92/227 (40%), Gaps = 12/227 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++ DD ++D + +++ + E L + + ++ ++ +E Sbjct: 7 LIADDEKEIRDLLKKYLERELYTVDIAINGEEALHLFNQNKYNLIILDLM--MPKVDGIE 64 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119 + R +R + +P++ ++ + G DD + KP E++AR+ A+ RR Sbjct: 65 VCRRLRNKTNIPILMLTAKDQEVDKILGLSIGADDYITKPFSINEVVARIKALMRRFLVL 124 Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + + V G+ L +E +L++ +N + KTQ+F Sbjct: 125 GSNASVQEKTLLTFKGLTIDVNKYIVNVDGKEISLTGKELELLKFFASNPEQVFTKTQLF 184 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++ + ++N V HI KLRKK+ + + + +GY Sbjct: 185 RNVWD-SNYIEDDNTVMVHIRKLRKKIEADPSNPKFIQTIWGIGYKF 230 >gi|116671258|ref|YP_832191.1| two component transcriptional regulator [Arthrobacter sp. FB24] gi|116611367|gb|ABK04091.1| two component transcriptional regulator, winged helix family [Arthrobacter sp. FB24] Length = 224 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 46/220 (20%), Positives = 86/220 (39%), Gaps = 5/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + +DG + S++ D+ ++ L G + Sbjct: 5 ILVVDDDEALAEMIGIVLRNDGFEPVFCADGGQALEVFRSSKPDLVLLDLML--PGMDGI 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IRA S P++ ++ + +SG DD V KP E++ARV A R Sbjct: 63 EVCRQIRAESDSPIVMLTAKSDTSDVVRGLESGADDYVPKPFKPAELVARVRARLRPGDQ 122 Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 I + G E L E +L L + + + ++G Sbjct: 123 KAPETLRIADITIDVAGHLVSRNDERISLTPLEFDLLVALARKPWQVFTRELLLEQVWG- 181 Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219 + A + +V H+ +LR K+ + + V + R +GY Sbjct: 182 YRHAADTRLVNVHVQRLRSKIERDPEAPEVVLTVRGVGYK 221 >gi|229084387|ref|ZP_04216667.1| Two-component response regulator [Bacillus cereus Rock3-44] gi|228698927|gb|EEL51632.1| Two-component response regulator [Bacillus cereus Rock3-44] Length = 219 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 42/223 (18%), Positives = 87/223 (39%), Gaps = 8/223 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L+DD + ++ + G + + + + D ++ +E Sbjct: 2 LLVDDESDMRQLVGMYLDNFGYEWGEAENGKDALHMLQAEHYDFVILDIM--MPEMNGIE 59 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH---REILARVAAIYRRL 119 + + IR S VP+I ++ ++ G DD + KP + V Y + Sbjct: 60 VCKEIRKTSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTKQ 119 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + G IR+ R E GE L +E +L +L + G+ ++ Q+ ++G Sbjct: 120 EEQQEELQFGSIRINEKSRKIETNGETISLTVKEFDLLHFLCEHNGQVFSREQLLEKVWG 179 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D A V++H+ +R KL + + +GY + Sbjct: 180 -YDYAGSTRTVDTHVKTMRLKLGESGN--YIQTVWGVGYKFEV 219 >gi|169826322|ref|YP_001696480.1| two-component response regulator YcbL [Lysinibacillus sphaericus C3-41] gi|168990810|gb|ACA38350.1| two-component response regulator YcbL [Lysinibacillus sphaericus C3-41] Length = 232 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 43/228 (18%), Positives = 89/228 (39%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D ++D +G + N+ E + D+ ++ + L Sbjct: 7 ILLVEDDEAIRDMVANFLLLEGFDVTTANNGEEALQYCLNQTFDLVILDIMI--PKLNGL 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-------REILARVAA 114 E+ ++IR + +P+I +S S G DD + KP + ++ R Sbjct: 65 EVLKVIREQAALPIIIMSAKDSDVDKALGLGLGADDYIAKPFSMLEFSARVKAVIRRATK 124 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + GP+++ G L +E IL+ + NR + K QI+ Sbjct: 125 YAGQTDHKQDVVVIGPLKIDIVNFSINKNGLEVKLTSKEFAILKLFVTNRNRVFTKEQIY 184 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 I+ +EN++ HI +LR+K+ + + + +GY + Sbjct: 185 QLIW-KDAYYGDENIINVHIRRLREKIEDDPSNPQYIKTLWGIGYKFE 231 >gi|256848492|ref|ZP_05553934.1| phosphate regulon transcriptional regulatory protein PhoB [Lactobacillus coleohominis 101-4-CHN] gi|256714759|gb|EEU29738.1| phosphate regulon transcriptional regulatory protein PhoB [Lactobacillus coleohominis 101-4-CHN] Length = 235 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 49/227 (21%), Positives = 94/227 (41%), Gaps = 12/227 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + D +G + E S + D+ ++ L LE Sbjct: 6 LVVDDEKPISDIIKFNLEKEGYEVVTAFDGEEGLEKVESDQPDLIILDLML--PKIDGLE 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + +RA P+I ++ S + + G DD V KP +RE++ARV A RR + Sbjct: 64 VAKRVRAKHNTPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQDAA 123 Query: 123 NNRAETGPIRV--------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N D +G+ L RE +L YL + G+ + + Q+ Sbjct: 124 NTPNAETENNDIKIGALTIHPDAYTVTKRGDNINLTHREFELLHYLAQHIGQVIKREQLL 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++G +D + V+ + +LR+K+ + + ++R +GY + Sbjct: 184 QTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPQWLVTRRGVGYYL 229 >gi|254823447|ref|ZP_05228448.1| two component response transcriptional regulatory protein MprA [Mycobacterium intracellulare ATCC 13950] Length = 228 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 51/224 (22%), Positives = 98/224 (43%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V++ +G S+E + L +S R D ++ L Sbjct: 3 ILVVDDDRAVRESLRRSLSFNGYSVELAHDGVEALELIASDRPDALVLDVM--MPRLDGL 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +R+ P++ ++ S+ + D+G DD + KP E+LAR+ A+ RR K Sbjct: 61 EVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTK 120 Query: 121 VSNN----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + + + R+ L R E +LE L+AN + + +++I Sbjct: 121 PEDEAESVAMKFSDLTLDPVTREVTRGERRISLTRTEFALLEMLIANPRRVLTRSRILEE 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G FD N +E ++ LR+K + + R +GY + Sbjct: 181 VWG-FDFPTSGNALEVYVGYLRRKTEADGESRLIHTVRGVGYVL 223 >gi|78357430|ref|YP_388879.1| two component transcriptional regulator [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78219835|gb|ABB39184.1| two component transcriptional regulator, winged helix family [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 229 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 43/225 (19%), Positives = 95/225 (42%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D + G + + L + D+ ++ L G V Sbjct: 6 LLVVEDDGDILQLLTFTLESAGFEVFSAMDGKTGLELAMREKPDLVVLDLMLPGMSGLDV 65 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + + + + P+I ++ + + G DD V KP RE++ R+ A+ +R Sbjct: 66 CKDLKRMPETQETPVIMLTARGEEVDRIVGLELGADDYVVKPFSPRELVLRIKAVLKRGA 125 Query: 121 VSNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + E RV ++ E+ G+ L E ++L L+ NRG+ + Q+ + Sbjct: 126 PFTEQEERTRWRVNGLSLDTEAHRVEIDGDEVTLTATEFKLLFELVRNRGRVRTRDQLLN 185 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G ++ V++H+ +LR+K+ + G +++ R +GY Sbjct: 186 TVWG-YEFEGYARTVDTHVRRLRQKIGDYAG--YIETIRGVGYRF 227 >gi|238788139|ref|ZP_04631934.1| Transcriptional regulatory protein baeR [Yersinia frederiksenii ATCC 33641] gi|238723726|gb|EEQ15371.1| Transcriptional regulatory protein baeR [Yersinia frederiksenii ATCC 33641] Length = 239 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 45/221 (20%), Positives = 86/221 (38%), Gaps = 5/221 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + + G + + A + ++ L G + Sbjct: 15 LIVEDEPKLGQLLVDYLQAAGYRTQWLTNGSEVVGAVRQAPPSIILLDLML--PGTDGIS 72 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR S VP++ ++ L + G DD + KP RE++ARV I RR + Sbjct: 73 ICREIRRFSDVPIMMVTAKTEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCQQQ 132 Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + QG + L E R+L+ L G ++ Q+ + +Y + Sbjct: 133 REQPSDTAPLLIDESRFQASYQGHLLELTPAEFRLLKILATQPGHVFSREQLLNNLYDDY 192 Query: 182 DEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 V + ++SHI LR+KL + + +GY + Sbjct: 193 -RVVTDRTIDSHIKNLRRKLEALDGKKPFIRAVYGMGYRWE 232 >gi|238783827|ref|ZP_04627845.1| Transcriptional regulatory protein baeR [Yersinia bercovieri ATCC 43970] gi|238715214|gb|EEQ07208.1| Transcriptional regulatory protein baeR [Yersinia bercovieri ATCC 43970] Length = 239 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 46/221 (20%), Positives = 87/221 (39%), Gaps = 5/221 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + + G S + + A + ++ L G + Sbjct: 15 LIVEDEPKLGQLLVDYLQAAGYSTQWITNGAEVVAAVRQAPPAMILLDLML--PGSDGIT 72 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR S VP++ ++ L + G DD + KP RE++ARV I RR + Sbjct: 73 ICREIRRFSDVPIMMVTAKTEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCQQQ 132 Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + QG + L E R+L+ L G ++ Q+ + +Y + Sbjct: 133 REQPSESAPLLIDESRFQASYQGHLLELTPAEFRLLKILATQPGHVFSREQLLNNLYDDY 192 Query: 182 DEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 V + ++SHI LR+KL + + +GY + Sbjct: 193 -RVVTDRTIDSHIKNLRRKLEALDGEKPFIRAVYGMGYRWE 232 >gi|113474756|ref|YP_720817.1| two component transcriptional regulator [Trichodesmium erythraeum IMS101] gi|110165804|gb|ABG50344.1| two component transcriptional regulator, winged helix family [Trichodesmium erythraeum IMS101] Length = 243 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 90/228 (39%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++ G + E + D+ ++ Sbjct: 8 ILVVDDEASIRRILETRLSMIGYDVVTAADGEEALETFHNTTPDLVVLDVM--MPKLDGY 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAA 114 + + +R S +P+I ++ + + + G DD V KP +E+ RV Sbjct: 66 GVCQELRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDK 125 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 S+ + IR+ ++ R E L E +LE L++ G+ ++++I Sbjct: 126 NGGNGIPSSGVIQVSTIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEIL 185 Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220 ++G + V+ VV+ HIS+LR KL + + + + R GY Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEEDPSNPELILTARGTGYLF 233 >gi|229171105|ref|ZP_04298702.1| Two-component response regulator [Bacillus cereus MM3] gi|228612378|gb|EEK69603.1| Two-component response regulator [Bacillus cereus MM3] Length = 233 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 46/230 (20%), Positives = 89/230 (38%), Gaps = 11/230 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ ++G + E L + ++ + Sbjct: 6 ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIM--MPKVDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + +R ++P+I +S + +G DD V KP + E++AR+ + RR Sbjct: 64 HMCMKVRESKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMK 123 Query: 122 SNNRAETG-------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N A +++ V GE L RE ILE L+ N G + QI+ Sbjct: 124 MNGFAIQNEDELEIGEMKINISTHTVIVDGEEVKLTPREFSILELLVRNPGMVFSAEQIY 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223 ++ +N V HI K+R+K+ + + +GY I+ + Sbjct: 184 EKVWNERSFQ-SDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGYKIEKD 232 >gi|170077559|ref|YP_001734197.1| two-component response regulator [Synechococcus sp. PCC 7002] gi|169885228|gb|ACA98941.1| two-component response regulator [Synechococcus sp. PCC 7002] Length = 239 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 45/227 (19%), Positives = 91/227 (40%), Gaps = 10/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ + G G ++ + + S D+ ++ L Sbjct: 6 ILVVDDDPAIRTLIVRFLGQKGYAVAAATDGQSAKETFQSFSPDLVILDINL--PDTLGY 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L ++ ++ ++ + F G DD + KP E+ RV AI RR + Sbjct: 64 ALCEQMQESKDTYVLILTSRTDATDKVRGFTQGADDYLTKPFDIIELEHRVHAILRRQRS 123 Query: 122 SNNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + V+GE L E +L +L N K ++++ Sbjct: 124 PVAPPARDQSLDFADLNIDPMRHVVAVKGEPVNLTALEFNLLHFLAKNANKVWRRSELIQ 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221 A++G +D ++ VV+ HI ++R+KL N + + P+ + R +GY + Sbjct: 184 AVWG-YDYLGDQRVVDVHIGQIRRKLDNLMQQENPIKTVRGVGYMFE 229 >gi|111220435|ref|YP_711229.1| two-component regulatory system response regulator [Frankia alni ACN14a] gi|111147967|emb|CAJ59633.1| response regulator in two-component regulatory system with PhoR, regulation of Pi uptake (OmpR family) [Frankia alni ACN14a] Length = 226 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 51/225 (22%), Positives = 95/225 (42%), Gaps = 8/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D D + +G + D+ ++ L G Sbjct: 4 LLVVEDEESFSDALSFMLEREGFEVGVVADGPSALAEFDRRGADLVLLDLML--PGLSGT 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R S VP+I ++ S + + G DD V KP RE++AR+ A+ RR Sbjct: 62 EVCRTLRTRSSVPIIMLTARDSEIDKVLGLELGADDYVTKPFSARELVARIRAVLRRRSE 121 Query: 122 SNNRAETG----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + AE P+R+ + V G + LP +E +LE + N G+ + + Q+ + Sbjct: 122 TEEVAEATLEAGPVRMDVERHVVTVDGSMVTLPLKEFELLEMFLRNAGRVLTRGQLIDRV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 +G D + ++ H+ +LR K+ + + R LGY + Sbjct: 182 WG-SDYVGDTKTLDVHVKRLRTKIEREPGNPRHLVTVRGLGYKFE 225 >gi|302536872|ref|ZP_07289214.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. C] gi|302445767|gb|EFL17583.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. C] Length = 246 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 48/227 (21%), Positives = 93/227 (40%), Gaps = 15/227 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + D A +G ++ S + ++ ++ L G LE Sbjct: 22 LVVEDDRTIADAIAARLRAEGFQVQTAYDGPAAVAAAESWQPELLVLDVML--PGFDGLE 79 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R ++A VP++ ++ L G DD + KP RE+ ARV + RR++ + Sbjct: 80 VCRRVQAQRPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRVERA 139 Query: 123 NNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 A + R VQ E L E +L L +++ Q+ Sbjct: 140 TLAATAPRGATLRLGDLEIDHAQRRVRVQAEDVHLTPTEFDLLVCLAGTPRAVLSREQLL 199 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + ++ D + V+SHI LR+K+ G D + + +GY+++ Sbjct: 200 AEVWDWADASG-TRTVDSHIKALRRKI----GADRIRTVHGVGYALE 241 >gi|241889083|ref|ZP_04776387.1| transcriptional regulatory protein WalR [Gemella haemolysans ATCC 10379] gi|241864332|gb|EER68710.1| transcriptional regulatory protein WalR [Gemella haemolysans ATCC 10379] Length = 234 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 47/227 (20%), Positives = 94/227 (41%), Gaps = 13/227 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + +G + N E L + D+ ++ L + + Sbjct: 6 ILVVDDEEPIANILEFNLKKEGYDVIVANDGEKAVELAFNDNPDLILLDLML--PKKDGM 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +RA +P+I ++ S + + G DD V KP RE++ARV RR+ Sbjct: 64 EVCREVRAKKNIPIIMLTAKNSEIDKVLGLEFGADDYVTKPFSTRELMARVKVNLRRVTK 123 Query: 122 SNNRAETGPIRVF---------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + GE L RRE + YL +RG+ + + Sbjct: 124 QQEEVAEEKNGGDLVIKDIVIYPEAYVIKKNGEEIDLTRREFDLFYYLAQHRGQVLTREN 183 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218 + ++G +D + V+ + +LR+K+ + + + ++R +GY Sbjct: 184 LLQTVWG-YDYFGDVRTVDVTVRRLREKVEDDSSQPEYIMTRRGVGY 229 >gi|225571365|ref|ZP_03780361.1| hypothetical protein CLOHYLEM_07463 [Clostridium hylemonae DSM 15053] gi|225159841|gb|EEG72460.1| hypothetical protein CLOHYLEM_07463 [Clostridium hylemonae DSM 15053] Length = 234 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 39/231 (16%), Positives = 86/231 (37%), Gaps = 14/231 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + + E + + ++ ++ L G Sbjct: 7 ILIVDDDENIAELISLYLTKECFDTMMVHDGEKALIAYDTYQPNLILLDLML--PGIDGY 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILAR 111 ++ R IRA S VP+I +S + + + G DD + KP + Sbjct: 65 QVCREIRAKSNVPIIMLSAKGEVFDKVLGLELGADDYMMKPFDSKELVARVKAVLRRYQA 124 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 V + E I + V G +P +E +L +L ++ + + Sbjct: 125 VPKAEEPAEDKGKCVEYPGIVINLTNYSVVVDGANVDMPPKELELLYFLASSPNQVFTRE 184 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 Q+ I+G ++ + V+ HI +LR+K+++ + + +GY + Sbjct: 185 QLLDQIWG-YEYIGDTRTVDVHIKRLREKIKDHSTWGL-STVWGIGYKFEV 233 >gi|220911625|ref|YP_002486934.1| two component transcriptional regulator, winged helix family [Arthrobacter chlorophenolicus A6] gi|219858503|gb|ACL38845.1| two component transcriptional regulator, winged helix family [Arthrobacter chlorophenolicus A6] Length = 226 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 50/225 (22%), Positives = 98/225 (43%), Gaps = 8/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D D L G +G +E ++ D+ ++ L G+ Sbjct: 4 ILIVEDEESFSDPLSYLLGKEGFEVEVVDNGLDAITEFDRNGADLVLLDLQL--PGQSGT 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117 E+ R +R S VP+I ++ S + + G DD V KP R + A + Sbjct: 62 EVCRQLRQRSTVPVIMLTAKDSEIDKVVGLELGADDYVTKPYSSRELVARVRAVLRRQGE 121 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 ++ ++ + GP+R+ + V GE LP +E +LE L+ N G+ + + Q+ + Sbjct: 122 PEELISSTVQAGPVRMDIERHVVSVDGEQVLLPLKEFELLEMLLRNSGRVLTRGQLIDRV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 +G D + ++ H+ +LR K+ + + + R LGY + Sbjct: 182 WG-SDYVGDTKTLDVHVKRLRGKIEPDPSAPRFLVTVRGLGYKFE 225 >gi|328555724|gb|AEB26216.1| Transcriptional regulatory protein WalR [Bacillus amyloliquefaciens TA208] Length = 235 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 40/228 (17%), Positives = 92/228 (40%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + + + D+ ++ L + + Sbjct: 5 ILVVDDEKPIADILEFNLRKEGYDVHCAYDGNEAVEMVEELQPDLILLDIML--PNKDGV 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR--------EILARVA 113 E+ R +R +P+I ++ S + + G DD V KP R + ++ Sbjct: 63 EVCREVRKKYDMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLRRQLT 122 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + ++N G + +F D + E L RE +L YL + G+ + + + Sbjct: 123 VAPAEEESASNDIHIGSLVIFPDAYVVSKREETIELTHREFELLHYLAKHIGQVMTREHL 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++G +D + V+ + +LR+K+ + + + ++R +GY + Sbjct: 183 LQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPNWIVTRRGVGYYL 229 >gi|311896850|dbj|BAJ29258.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 230 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 51/228 (22%), Positives = 94/228 (41%), Gaps = 12/228 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D D + +G + + D+ ++ L G E Sbjct: 5 LVVEDEESFSDALSYMLRKEGFEVAVAATGPDALEQFERNGADLVLLDLML--PGLPGTE 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +R S VP+I ++ S + + G DD V KP RE++AR+ A+ RR Sbjct: 63 VCRQLRVRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPYSTRELVARIRAVLRRRGED 122 Query: 123 NNRAETG--------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 P+R+ D V G LP +E +LE L+ N G+ + + Q+ Sbjct: 123 GGADGAAAPGALEAGPVRMDVDRHVVTVDGAKVDLPLKEFDLLEMLLRNAGRVLTRMQLI 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 ++G D + ++ H+ +LR K+ + + + R LGY + Sbjct: 183 DRVWGA-DYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFE 229 >gi|227824929|ref|ZP_03989761.1| two-component system transcriptional regulator [Acidaminococcus sp. D21] gi|226905428|gb|EEH91346.1| two-component system transcriptional regulator [Acidaminococcus sp. D21] Length = 234 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 44/224 (19%), Positives = 83/224 (37%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD + ++ F D+ ++ D+ ++ G Sbjct: 6 ILIADDDEKLLSVLLSYFKDEQFTVYLARDGGEALKRLKEDHPDIMVLDIM--MPGIDGF 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 E+ R R + +P+I +S L G DD V KP H RE++ARV + RR + Sbjct: 64 EVCRRARQFTDIPIIFLSAKDDEADRLVGLHLGADDYVVKPFHVRELIARVKSFLRRRRG 123 Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 E + + + + + L E +L+ L + + ++ Q+ Sbjct: 124 EVLSQVASYEIRDLFIDKERFEVRRKKAWISLTPTEFSLLDILASAPDRVFSRMQLLEKA 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 G E +++HI LRKKL + + + +GY Sbjct: 184 MGGAYYEGAERTIDTHIRNLRKKLEPDPSQPIYIVTVYGVGYKF 227 >gi|225180887|ref|ZP_03734335.1| two component transcriptional regulator, winged helix family [Dethiobacter alkaliphilus AHT 1] gi|225168368|gb|EEG77171.1| two component transcriptional regulator, winged helix family [Dethiobacter alkaliphilus AHT 1] Length = 237 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 36/227 (15%), Positives = 92/227 (40%), Gaps = 10/227 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + + + + + +++ + + + + ++ ++ L E Sbjct: 9 LVVEDDSDISELVRIVLRAEDFAVDVAHDGQKGLEMAITKPYNLIILDLML--PTLDGWE 66 Query: 63 LPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIY 116 + R +R A P+I ++ + G DD + KP RE LARV Sbjct: 67 ICRRLRDTAATRSTPIIMLTAKNEESDKVLGLQVGADDYLTKPFRPREFLARVHALLRRT 126 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 ++ + ++ ++ + L +E +L L N G+ + + Q+ Sbjct: 127 TDYNQPDDTLYFCTLTIYPQSYQAFIEQKTVDLTPKEFELLLILARNAGRTLKREQLLEQ 186 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDW 222 ++G ++ ++ HI +LR+K+ + G+ V + +GY ++ Sbjct: 187 VWG-YEYPGSTRTIDEHIKRLRQKISQLEPGYTFVQTVWGVGYKLEV 232 >gi|300784918|ref|YP_003765209.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|7339512|emb|CAB82846.1| putative response regulator [Amycolatopsis mediterranei] gi|14572576|emb|CAC42478.2| response regulator protein [Amycolatopsis mediterranei] gi|299794432|gb|ADJ44807.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 229 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 50/225 (22%), Positives = 94/225 (41%), Gaps = 10/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D A V++G G + S E + R D+ ++ L G E Sbjct: 5 LVVEDDAAVREGLQLALRRQGHVVHTAESGELGIEVLVRHRPDLVVLDLML--PGMDGFE 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------AIY 116 R +RA VP+I ++ + ++G DD V KP+ R + AR+ A+ Sbjct: 63 TCRRMRAAGPVPIIMLTARTDDFDIVAGLEAGADDYVAKPVEPRVLDARIRAVLRRAAVE 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 R + G + + + +GE L E ++L L G+ ++ QI SA Sbjct: 123 RPDGPAAAEERHGDLVIDRAALEVTKRGEPVSLTPTELKLLLELSRTPGQVYSRQQILSA 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++ D + +V++ + +LR K+ + + V + R GY Sbjct: 183 VWD-HDYLGDSRLVDACVQRLRAKIEDVPAKPEHVQTVRGFGYRF 226 >gi|15608121|ref|NP_215496.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis H37Rv] gi|15840406|ref|NP_335443.1| DNA-binding response regulator [Mycobacterium tuberculosis CDC1551] gi|148660762|ref|YP_001282285.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis H37Ra] gi|148822190|ref|YP_001286944.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis F11] gi|167968048|ref|ZP_02550325.1| mycobacterial persistence regulator mprA (two component response transcriptional regulatory protein) [Mycobacterium tuberculosis H37Ra] gi|215402797|ref|ZP_03414978.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis 02_1987] gi|215410580|ref|ZP_03419388.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis 94_M4241A] gi|215445129|ref|ZP_03431881.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis T85] gi|218752651|ref|ZP_03531447.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis GM 1503] gi|253799991|ref|YP_003032992.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis KZN 1435] gi|254363900|ref|ZP_04979946.1| mycobacterial persistence regulator mprA (two component response transcriptional regulatory protein) [Mycobacterium tuberculosis str. Haarlem] gi|254549965|ref|ZP_05140412.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|289555237|ref|ZP_06444447.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis KZN 605] gi|289744717|ref|ZP_06504095.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis 02_1987] gi|289757064|ref|ZP_06516442.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis T85] gi|289761115|ref|ZP_06520493.1| mycobacterial persistence regulator mprA (two component response transcriptional regulatory protein) [Mycobacterium tuberculosis GM 1503] gi|294996473|ref|ZP_06802164.1| persistence regulator MprA [Mycobacterium tuberculosis 210] gi|297633506|ref|ZP_06951286.1| persistence regulator MprA [Mycobacterium tuberculosis KZN 4207] gi|297730491|ref|ZP_06959609.1| persistence regulator MprA [Mycobacterium tuberculosis KZN R506] gi|298524475|ref|ZP_07011884.1| mycobacterial persistence regulator mprA (two component response transcriptional regulatory protein) [Mycobacterium tuberculosis 94_M4241A] gi|306775116|ref|ZP_07413453.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu001] gi|306781969|ref|ZP_07420306.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu002] gi|306783676|ref|ZP_07421998.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu003] gi|306788030|ref|ZP_07426352.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu004] gi|306792364|ref|ZP_07430666.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu005] gi|306796766|ref|ZP_07435068.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu006] gi|306802653|ref|ZP_07439321.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu008] gi|306806833|ref|ZP_07443501.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu007] gi|306967031|ref|ZP_07479692.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu009] gi|306971221|ref|ZP_07483882.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu010] gi|307078952|ref|ZP_07488122.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu011] gi|313657820|ref|ZP_07814700.1| persistence regulator MprA [Mycobacterium tuberculosis KZN V2475] gi|81816332|sp|O53894|MPRA_MYCTU RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial persistence regulator A gi|160012482|sp|A5U123|MPRA_MYCTA RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial persistence regulator A gi|2916942|emb|CAA17580.1| MYCOBACTERIAL PERSISTENCE REGULATOR MRPA (TWO COMPONENT RESPONSE TRANSCRIPTIONAL REGULATORY PROTEIN) [Mycobacterium tuberculosis H37Rv] gi|13880575|gb|AAK45257.1| DNA-binding response regulator [Mycobacterium tuberculosis CDC1551] gi|134149414|gb|EBA41459.1| mycobacterial persistence regulator mprA (two component response transcriptional regulatory protein) [Mycobacterium tuberculosis str. Haarlem] gi|148504914|gb|ABQ72723.1| mycobacterial persistence regulator MrpA [Mycobacterium tuberculosis H37Ra] gi|148720717|gb|ABR05342.1| mycobacterial persistence regulator mprA (two component response transcriptional regulatory protein) [Mycobacterium tuberculosis F11] gi|253321494|gb|ACT26097.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis KZN 1435] gi|289439869|gb|EFD22362.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis KZN 605] gi|289685245|gb|EFD52733.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis 02_1987] gi|289708621|gb|EFD72637.1| mycobacterial persistence regulator mprA (two component response transcriptional regulatory protein) [Mycobacterium tuberculosis GM 1503] gi|289712628|gb|EFD76640.1| two component response transcriptional regulatory protein MprA [Mycobacterium tuberculosis T85] gi|298494269|gb|EFI29563.1| mycobacterial persistence regulator mprA (two component response transcriptional regulatory protein) [Mycobacterium tuberculosis 94_M4241A] gi|308216323|gb|EFO75722.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu001] gi|308325360|gb|EFP14211.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu002] gi|308331519|gb|EFP20370.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu003] gi|308335324|gb|EFP24175.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu004] gi|308339132|gb|EFP27983.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu005] gi|308342803|gb|EFP31654.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu006] gi|308346656|gb|EFP35507.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu007] gi|308350571|gb|EFP39422.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu008] gi|308355261|gb|EFP44112.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu009] gi|308359215|gb|EFP48066.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu010] gi|308363126|gb|EFP51977.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu011] gi|323720547|gb|EGB29628.1| myco persistence regulator mprA [Mycobacterium tuberculosis CDC1551A] gi|326904793|gb|EGE51726.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis W-148] gi|328459733|gb|AEB05156.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis KZN 4207] Length = 230 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 50/224 (22%), Positives = 96/224 (42%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V++ +G S+E + + +S R D ++ L Sbjct: 5 ILVVDDDRAVRESLRRSLSFNGYSVELAHDGVEALDMIASDRPDALVLDVM--MPRLDGL 62 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +R P++ ++ S+ + D+G DD + KP E+LAR+ A+ RR K Sbjct: 63 EVCRQLRGTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTK 122 Query: 121 VSN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + + R+ L R E +LE L+AN + + +++I Sbjct: 123 PEDAAESMAMRFSDLTLDPVTREVNRGQRRISLTRTEFALLEMLIANPRRVLTRSRILEE 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G FD N +E ++ LR+K + + R +GY + Sbjct: 183 VWG-FDFPTSGNALEVYVGYLRRKTEADGEPRLIHTVRGVGYVL 225 >gi|322391842|ref|ZP_08065307.1| DNA-binding response regulator [Streptococcus peroris ATCC 700780] gi|321145322|gb|EFX40718.1| DNA-binding response regulator [Streptococcus peroris ATCC 700780] Length = 234 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 49/233 (21%), Positives = 97/233 (41%), Gaps = 14/233 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + + L + + D+ ++ L L Sbjct: 4 ILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREAIELFEAEKPDIIILDLML--PEIDGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-------- 113 E+ + IR S VP+I +S S + + G DD V KP +RE+ ARV Sbjct: 62 EVAKTIRKTSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTEL 121 Query: 114 --AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + + G + + D + GE L RE +L +L ++ G+ + + Sbjct: 122 IAVDNQEEDSKLQSLQIGDLEILPDAYVAKKYGEELDLTHREFELLHHLASHIGQVITRE 181 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223 + ++G +D + V+ I +LR+K+ + + + ++R +GY + N Sbjct: 182 HLLETVWG-YDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 233 >gi|332981484|ref|YP_004462925.1| winged helix family two component transcriptional regulator [Mahella australiensis 50-1 BON] gi|332699162|gb|AEE96103.1| two component transcriptional regulator, winged helix family [Mahella australiensis 50-1 BON] Length = 229 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 55/225 (24%), Positives = 98/225 (43%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD ++ G DG + E + D+ ++ L L Sbjct: 5 ILIIDDERIMVKGLKFSLEQDGYETDAAYDGEEGLNKALNEHYDLIILDIML--PKINGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118 E+ R +R S VP+I ++ + + G DD + KP + E+ ARV AI+RR Sbjct: 63 EVCRQVREQSSVPIIMLTAKGDDMDKILGLEYGADDYLAKPFNILELKARVKAIFRRLDL 122 Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 K ++ + + + + R V G L +E +LE L+ RGK ++ Q+ Sbjct: 123 ASPKKNDKYLKIKNLTINFENRTVLVDGRDANLTAKEFDLLEVLVNGRGKIFSREQLLET 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++ +D + V+ HI +LR+KL N + + +K +GY Sbjct: 183 VW-KYDYLGDLRTVDVHIRRLREKLEKNPSQPELIFTKWGVGYYF 226 >gi|240173513|ref|ZP_04752171.1| two-component sensory transduction protein RegX3 [Mycobacterium kansasii ATCC 12478] Length = 227 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 54/225 (24%), Positives = 100/225 (44%), Gaps = 9/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + D L +G + D+ ++ L G + Sbjct: 5 LIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRSGADIVLLDLML--PGMSGTD 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIYR 117 + + +RA S VP+I ++ S + + G DD V KP RE++AR Sbjct: 63 VCKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDD 122 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + S+ E+GP+R+ + V GEV LP +E +LEYLM N G+ + + Q+ + Sbjct: 123 DAESSDGILESGPVRMDVERHVVSVNGEVITLPLKEFDLLEYLMRNSGRVLTRGQLIDRV 182 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 +G D + ++ H+ +LR K+ + + + R LGY ++ Sbjct: 183 WGA-DYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVRGLGYKLE 226 >gi|15895700|ref|NP_349049.1| response regulator [Clostridium acetobutylicum ATCC 824] gi|15025451|gb|AAK80389.1|AE007743_11 Response regulator (CheY-like domain and HTH-type DNA-binding domain) [Clostridium acetobutylicum ATCC 824] gi|325509850|gb|ADZ21486.1| Response regulator (CheY-like domain and HTH-type DNA-binding domain) [Clostridium acetobutylicum EA 2018] Length = 224 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 41/223 (18%), Positives = 95/223 (42%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D +++ A +G S+ + + + ++ L Sbjct: 5 ILIVEDEDRMRELIKAYLRREGYSVLEAADGKEALEMFDRNSISLVILDIMLPL--LDGW 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + IR S+VP+I ++ L ++ G DD V KP + + A+V + +R++ Sbjct: 63 TVCTNIREKSEVPIIMLTAKSEEDDKLLGYELGADDYVTKPCSPKVLTAKVKVLLKRIQP 122 Query: 122 SNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + ++ + + ++ + L +E +L Y N+G + + +I ++G Sbjct: 123 NEKSKVQNFDGLKIDAISHEVTIEDKEIYLSPKEYDLLIYFSNNKGITLTRDKILDNVWG 182 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 D + V++H+ +LR+KL++K V + R GY + Sbjct: 183 E-DYYGDLRTVDTHVKRLREKLQDKAY--LVATVRGSGYKFEV 222 >gi|84684965|ref|ZP_01012865.1| Phosphate regulon transcriptional regulator, PhoR [Maritimibacter alkaliphilus HTCC2654] gi|84667300|gb|EAQ13770.1| Phosphate regulon transcriptional regulator, PhoR [Rhodobacterales bacterium HTCC2654] Length = 229 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 47/223 (21%), Positives = 96/223 (43%), Gaps = 8/223 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L++D ++ +G + + + L D+ ++ L G +E Sbjct: 9 LLVEDEPAQREILRYNLASEGYDVSIAENGDDAMVLVEEIGPDLILLDWML--PGVSGIE 66 Query: 63 LPRII---RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 + R + R + +P+I +S + ++G DD + KP +E++AR+ RR Sbjct: 67 ICRRVKSRRETTDIPVIMLSARSDEMDRVRGLETGADDYMVKPFSVQELMARIRTQLRRT 126 Query: 120 KVSNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + ++ + I + + G+ L E R+L M G+ ++ Q+ + Sbjct: 127 RPASVGQQLAYEDIILDGETHRVTRGGDPIKLGPTEFRLLTTFMEKPGRVWSREQLLDRV 186 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G D V+ V+ H+ +LRK L G DP+ + R GY++ Sbjct: 187 WGR-DVYVDTRTVDVHVGRLRKALCKTGGDDPLRTVRGTGYAL 228 >gi|325571333|ref|ZP_08146833.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus casseliflavus ATCC 12755] gi|325155809|gb|EGC68005.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus casseliflavus ATCC 12755] Length = 234 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 49/230 (21%), Positives = 92/230 (40%), Gaps = 14/230 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +G + + + L S D ++ L + Sbjct: 4 ILVVDDEPSIVTLLTFNLEKEGYQVVSASDGQKAYELALSKPFDFIILDVML--PNMDGI 61 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ + +R P++ ++ + + G DD + KP RE+LAR+ AI+RRL+ Sbjct: 62 EITKKLRQEKIETPILVLTAKDDPIDRILGLEIGADDYLTKPFSPREVLARMKAIFRRLE 121 Query: 121 VSNNRAETGPI---------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 E + V GE L +E +L Y M +G+ + + Sbjct: 122 PRQQTREEDQPAEILQVGGIQADLTNFQVSVDGEKIFLTPKEFELLVYFMKRKGRVIDRD 181 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + + I+ FD + +V+ HIS LR+KL + + + + R GY Sbjct: 182 TLLNRIW-NFDFDGQSRIVDVHISHLREKLEADPKRPEYLVTVRGFGYKF 230 >gi|293115618|ref|ZP_05792356.2| DNA-binding response regulator VicR [Butyrivibrio crossotus DSM 2876] gi|292809129|gb|EFF68334.1| DNA-binding response regulator VicR [Butyrivibrio crossotus DSM 2876] Length = 235 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 48/223 (21%), Positives = 90/223 (40%), Gaps = 10/223 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + G D + E L S D+ ++ L L Sbjct: 12 LVVDDEKAIVKGIKFSLEQDDAEVSCAYDGEEALELAKSQEFDIILLDLML--PKIDGLS 69 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH------HREILARVAAIY 116 + R IR S VP+I I+ + + G DD + KP + + + R + Sbjct: 70 VCRQIREFSNVPIIMITAKGEDMDKIMGLEYGADDYITKPFNILEVKARMKAIMRRNSFN 129 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + S+ G +R+ DGR + L +E +LE L+ N K + + + Sbjct: 130 LKKEQSDRVIIVGDLRLDRDGRRLFIGDREVNLTAKEFDVLELLVMNPNKVYGRDNLLNI 189 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGY 218 ++G ++ + V+ HI +LR+K+ + V +K +GY Sbjct: 190 VWG-YEYPGDARTVDVHIRRLREKIEDDPSNPKYVHTKWGVGY 231 >gi|157412490|ref|YP_001483356.1| two-component response regulator [Prochlorococcus marinus str. MIT 9215] gi|157387065|gb|ABV49770.1| two-component response regulator [Prochlorococcus marinus str. MIT 9215] Length = 248 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 91/228 (39%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD A ++ G + + + L D+ ++ Sbjct: 11 ILVADDEASIRRILETRLSMIGYKVVTASDGKEALKLFKDYDPDLVVLDVM--MPKLDGY 68 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + +R S VP++ ++ + + + G DD V KP +E+ AR+ + RR+ Sbjct: 69 GVCQELRKDSDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRIDK 128 Query: 122 SNNRAETG-------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 I++ ++ R E L E +LE L++ G+ ++ +I Sbjct: 129 EQIPGMPNSGLILVTDIKIDTNRRQVFKSDERIRLTGMEFSLLELLVSRSGEPFSRGEIL 188 Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++G + V+ VV+ HIS+LR KL + + + + R GY Sbjct: 189 KEVWGYTPERHVDTRVVDVHISRLRSKLEADPANPELILTARGTGYLF 236 >gi|307824851|ref|ZP_07655074.1| two component transcriptional regulator, winged helix family [Methylobacter tundripaludum SV96] gi|307734209|gb|EFO05063.1| two component transcriptional regulator, winged helix family [Methylobacter tundripaludum SV96] Length = 240 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 39/222 (17%), Positives = 87/222 (39%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++++D +++ + + G E + A D+ ++ L G G + Sbjct: 6 ILVVEDEDAIREMLMMVLEQAGFRSIAAADAEDAQKALDEALPDLILLDWMLPGVSGVEW 65 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118 + + ++P+I ++ + + + G DD + KP +E+ R Sbjct: 66 ARRLKKDPMYRELPIILLTARGEEEDKVRGLEIGADDYMTKPFSPKELVARIRAVLRRSG 125 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + G + + ++ + + + E R++++ M + K +TQ+ ++ Sbjct: 126 KINDLAQITLGDLVLDTEQHRLSIGDKQLEVSPTEFRLMQFFMTHPDKVFNRTQLLDQVW 185 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G +EE V+ HI +LRK L D V + R GY Sbjct: 186 GRSVY-IEERTVDVHIRRLRKILGEHGREDLVQTVRGFGYRF 226 >gi|167760789|ref|ZP_02432916.1| hypothetical protein CLOSCI_03174 [Clostridium scindens ATCC 35704] gi|167661676|gb|EDS05806.1| hypothetical protein CLOSCI_03174 [Clostridium scindens ATCC 35704] Length = 234 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 40/231 (17%), Positives = 85/231 (36%), Gaps = 14/231 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + + E + + ++ L G Sbjct: 7 ILIVDDDENIAELISLYLTKECFDTMMVHDGEKALIAYDTYHPSLILLDLML--PGIDGY 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILAR 111 ++ R IRA S VP+I +S + + + G DD + KP + Sbjct: 65 QVCREIRAKSNVPIIMLSAKGEVFDKVLGLELGADDYMMKPFDSKELVARVKAVLRRYQA 124 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + + E I + V GE +P +E +L +L A+ + + Sbjct: 125 IPKPEIPGEDKGKCVEYPGITINLTNYSVIVDGETVDMPPKELELLYFLAASPNQVFTRE 184 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 Q+ I+G ++ + V+ HI +LR+K+++ + + +GY + Sbjct: 185 QLLDQIWG-YEYIGDTRTVDVHIKRLREKIKDHSDWSL-STVWGIGYKFEV 233 >gi|16329558|ref|NP_440286.1| OmpR subfamily [Synechocystis sp. PCC 6803] gi|1652041|dbj|BAA16966.1| OmpR subfamily [Synechocystis sp. PCC 6803] Length = 245 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 44/230 (19%), Positives = 86/230 (37%), Gaps = 11/230 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D + + + N E + D+ ++ L G +V Sbjct: 14 ILIVEDDQEIAQLIRETLEREQFTCIVTNDGETGLRIFQEQVPDLIVLDLMLPKLDGLEV 73 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119 R ++ ++ + +G DD + KP RE++ARV A+ RR Sbjct: 74 CTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKPFSPRELVARVRALLRRQL 133 Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 ++ + R + E L E +L M+ G+ +TQ Sbjct: 134 RQGQPVGQIYRTNHFQVDLDQHQASRYQGDRQEELELTGLEFNLLATFMSYPGRVWNRTQ 193 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 + ++G D +E VV++HI +LRKK+ + + + LGY + Sbjct: 194 LIEKLWGN-DFFGDERVVDTHIRRLRKKIEPDPANPTFIKTVIGLGYKFE 242 >gi|238923834|ref|YP_002937350.1| hypothetical protein EUBREC_1462 [Eubacterium rectale ATCC 33656] gi|238875509|gb|ACR75216.1| hypothetical protein EUBREC_1462 [Eubacterium rectale ATCC 33656] Length = 226 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 46/223 (20%), Positives = 100/223 (44%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + ++ +G + E + + D++ + ++ Sbjct: 6 ILVVDDESRMRKLVHDFLAREGYEVLEAGDGEEALDIFYQQK-DIALLVLDIMMPRINGF 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 E+ R IR S+VP+I ++ + L+ FD G D+ ++KP + ++ARV + Sbjct: 65 EVCREIRQTSKVPIIMLTAKGDERDELNGFDIGADEYISKPFSPKILVARVNALLRRANK 124 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 L +E G I + + G L +E +L+Y M+N+G + + +I +++ Sbjct: 125 LGKEAVISEAGGIVMDKTAHTVAIDGRNIELSVKEFELLDYFMSNQGIALTRERILDSVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +D + +++H+ KLR K+ K D + + +GY + Sbjct: 185 S-YDYFGDARTIDTHVKKLRSKMGAKG--DYIKTVWGVGYKFE 224 >gi|196036852|ref|ZP_03104240.1| DNA-binding response regulator [Bacillus cereus W] gi|195990534|gb|EDX54514.1| DNA-binding response regulator [Bacillus cereus W] Length = 233 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 46/230 (20%), Positives = 89/230 (38%), Gaps = 11/230 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ ++G + E L + ++ + Sbjct: 6 ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIM--MPKVDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + +R ++P+I +S + +G DD V KP + E++AR+ + RR Sbjct: 64 HMCMKVREEKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMK 123 Query: 122 SNNRAETG-------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N A +++ V+GE L RE ILE L N G + QI+ Sbjct: 124 MNGFAIQNEDDLEIGEMKINISTHKVIVEGEEVKLTPREFSILELLARNPGMVFSAEQIY 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223 ++ +N V HI K+R+K+ + + +GY I+ + Sbjct: 184 EKVWNERSFQ-SDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGYKIEKD 232 >gi|145220688|ref|YP_001131366.1| two component transcriptional regulator [Mycobacterium gilvum PYR-GCK] gi|145213174|gb|ABP42578.1| two component transcriptional regulator, winged helix family [Mycobacterium gilvum PYR-GCK] Length = 228 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 52/226 (23%), Positives = 100/226 (44%), Gaps = 10/226 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + D L +G A D+ ++ L G + Sbjct: 5 LIVEDEESLADPLAFLLRKEGFETTVVTDGPSALAEFERAGADIVLLDLML--PGMSGTD 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + +R+ S VP+I ++ S + + G DD V KP RE++AR+ A+ RR + Sbjct: 63 VCKQLRSRSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGADA 122 Query: 123 NNRAETG------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 ++ P+R+ + V G LP +E +LEYLM N G+ + + Q+ Sbjct: 123 DDLGVADGVLEAGPVRMDVERHVVSVNGAPITLPLKEFDLLEYLMRNSGRVLTRGQLIDR 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 ++G D + ++ H+ +LR K+ + + + R LGY ++ Sbjct: 183 VWGA-DYVGDTKTLDVHVKRLRSKIESDPANPVHLVTVRGLGYKLE 227 >gi|329768144|ref|ZP_08259649.1| transcriptional regulatory protein walR [Gemella haemolysans M341] gi|328838055|gb|EGF87674.1| transcriptional regulatory protein walR [Gemella haemolysans M341] Length = 234 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 48/227 (21%), Positives = 94/227 (41%), Gaps = 13/227 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + +G + N E L S D+ ++ L + + Sbjct: 6 ILVVDDEEPIANILDFNLKKEGYDVIVANDGEKAVELAFSENPDLILLDLML--PKKDGM 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +RA +P+I ++ S + + G DD V KP RE++ARV RR+ Sbjct: 64 EVCREVRAKKNIPIIMLTAKNSEIDKVLGLEFGADDYVTKPFSTRELMARVKVNLRRVTK 123 Query: 122 SNNRAETGPIRVF---------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + GE L RRE + YL +RG+ + + Sbjct: 124 QQEEVVEEKSGSDLVIKDIVIYPEAYVIKKNGEEIDLTRREFDLFYYLAQHRGQVLTREN 183 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218 + ++G +D + V+ + +LR+K+ + + + ++R +GY Sbjct: 184 LLQTVWG-YDYFGDVRTVDVTVRRLREKVEDDSSQPEYIMTRRGVGY 229 >gi|307267065|ref|ZP_07548578.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter wiegelii Rt8.B1] gi|326391596|ref|ZP_08213126.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus JW 200] gi|306917896|gb|EFN48157.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter wiegelii Rt8.B1] gi|325992378|gb|EGD50840.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus JW 200] Length = 234 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 40/224 (17%), Positives = 90/224 (40%), Gaps = 7/224 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVL 61 ++I+D + + G + + + + D+ ++ L G ++ Sbjct: 6 LVIEDEIHILELLRYNLEAAGYKVITSENGKEGLDKALEGKPDLVILDLMLPDVDGLEIC 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117 ++ + +P+I ++ + + G DD + KP R I A + + Sbjct: 66 KILKKNDETKNIPIIMLTAKSEEFDKVLGLELGADDYITKPFSVRELLARIKAVLRRTQQ 125 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + G I + + +G+V L +E +L+ L N GK + + + + Sbjct: 126 PEEEKEGIIKFGDIVIDTGKHLVYKKGKVLELTLKEFELLKLLSQNMGKVLTRDYLLDKV 185 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 +G ++ A E V+ HI LRKK+ + +++ R +GY + Sbjct: 186 WG-YEYAGETRTVDVHIRHLRKKIEDDDKSPVYIETVRGIGYKL 228 >gi|283851685|ref|ZP_06368964.1| two component transcriptional regulator, winged helix family [Desulfovibrio sp. FW1012B] gi|283573015|gb|EFC20996.1| two component transcriptional regulator, winged helix family [Desulfovibrio sp. FW1012B] Length = 227 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 38/225 (16%), Positives = 87/225 (38%), Gaps = 11/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G + E ++ L G Sbjct: 6 ILIVEDDEDIVELLAFNLQSAGFATETAKDGYEALTKARRTPPAGIILDLML--PGLDGF 63 Query: 62 ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 E+ + ++ + P+I ++ + + G DD V KP RE++ R+ A+ +R Sbjct: 64 EVCKELKRDPKTAGAPIIMLTARGEEVDRIVGLELGADDYVVKPFSPRELILRLRAVLKR 123 Query: 119 LKVSNNRAETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + V + GE L E R+L L + G+ + + ++ + Sbjct: 124 HAPETEKRQVLSRDGLSVDLGAHRVTLDGEEVALTATEFRLLAELFQSTGRVLTRDRLLN 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +++G ++ V++H+ +LR+KL +++ R +GY Sbjct: 184 SVWG-YEFEGYARTVDTHVRRLRQKLGACS--RMIETVRGVGYRF 225 >gi|186686259|ref|YP_001869455.1| two component transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186468711|gb|ACC84512.1| two component transcriptional regulator, winged helix family [Nostoc punctiforme PCC 73102] Length = 236 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 36/232 (15%), Positives = 81/232 (34%), Gaps = 15/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G + D+ ++ + G L Sbjct: 3 ILIVEDEPEIAHLIQLSLEKEGFFCRISRDGINALRMFQEQPPDLIILDLMI--PGLDGL 60 Query: 62 ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILA 110 E+ IR ++ ++ + +G DD + KP RE + Sbjct: 61 EVCARIRQKPGTKDPYILMLTAKGEEIDRVIGLSTGADDYMVKPFSPRELIARVRALLRR 120 Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + + + + + Q EV L E +L ++N G+ + Sbjct: 121 SLRQGGQNQVNRTQHFIVDVDQRTASRQMNSQQPEVLDLTTLEFNLLTTFVSNPGRVWNR 180 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221 TQ+ ++G + +E VV++H+++LRKK+ + + +GY + Sbjct: 181 TQLIDKLWG-DNFFGDERVVDTHVARLRKKIEPDSASPTFIKTVVGVGYKFE 231 >gi|312884258|ref|ZP_07743967.1| response regulator [Vibrio caribbenthicus ATCC BAA-2122] gi|309368031|gb|EFP95574.1| response regulator [Vibrio caribbenthicus ATCC BAA-2122] Length = 229 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 37/222 (16%), Positives = 92/222 (41%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D A +++ + G + + D+ ++ L G G Sbjct: 5 ILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSAVTKLAEPFPDLVLLDWMLPGGSGINF 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ + +P++ ++ + + + G DD + KP +E++AR+ A+ RR+ Sbjct: 65 IKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIRRVT 124 Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + + +R+ + E ++L + M ++ + ++ Q+ + ++ Sbjct: 125 PTALEDVIDVQGLRLDPVSHRVTANDTALDMGPTEFKMLHFFMTHQERVYSREQLLNNVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G + VE+ V+ HI +LRK L + + R GY Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALEFAGHDKLIQTVRGAGYRF 225 >gi|297624706|ref|YP_003706140.1| winged helix family two component transcriptional regulator [Truepera radiovictrix DSM 17093] gi|297165886|gb|ADI15597.1| two component transcriptional regulator, winged helix family [Truepera radiovictrix DSM 17093] Length = 223 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 44/219 (20%), Positives = 92/219 (42%), Gaps = 4/219 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G + + D+ ++ L Sbjct: 7 ILIVEDDLDISRLLTLELEEAGFRVTACETGMRGLAAVRELNPDLIVLDLGL--PDLSGA 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R S P+I ++ + T ++ ++G DD + KP H E+ + R + Sbjct: 65 EIARRVRKTSSTPIIILTAADDVATKVEMLNAGADDYLAKPFHTEEL-LARIRVQLRHQN 123 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + G + + + R + L RE +L YL + G+ + +I ++G Sbjct: 124 AGSAQTVGDMVIDINRRQLYWDKQEIRLSPREFDLLVYLCGSPGRVYTRQEIEQNVWGE- 182 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + NVV+ HI+ +R KLR+ G+ + + R +GY+I Sbjct: 183 ELPPSSNVVDVHIANIRAKLRDAGGYGLIRTVRGIGYAI 221 >gi|302382397|ref|YP_003818220.1| transcriptional regulator [Brevundimonas subvibrioides ATCC 15264] gi|302193025|gb|ADL00597.1| two component transcriptional regulator, winged helix family [Brevundimonas subvibrioides ATCC 15264] Length = 239 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 52/225 (23%), Positives = 91/225 (40%), Gaps = 10/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ G G G S + +S D+ ++ GE L Sbjct: 8 ILVVDDDPGIREVLCEYLGQHGYEARGAASAAEMDRALASGPTDLIVLDLM--MPGEDGL 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R + P++ +S + + G DD + KP + RE+LAR+ A+ RR + Sbjct: 66 SVVRRL--SGTPPVVMLSAMGEDTDRIVGLELGADDYLAKPCNPRELLARIRAVLRRPRD 123 Query: 122 SNNRAETGPIRVFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + AE GE L E +L + G+ + + Q+ A Sbjct: 124 DDTPAEAALTFDGWTLDLVRRELKRSNGEPVQLSAGEFGLLRAFVERPGRVLTRDQLLEA 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 G + V + ++ IS+LRKKL + G D + + R GY D Sbjct: 184 ARGT-EADVFDRAMDVQISRLRKKLDDGSGRDLITTIRGEGYRFD 227 >gi|198242939|ref|YP_002215027.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197937455|gb|ACH74788.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|326622781|gb|EGE29126.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 226 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 47/219 (21%), Positives = 92/219 (42%), Gaps = 3/219 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D + + G ++ L + ++ L G Sbjct: 3 ILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIML--PGLDGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R +R Q P+I ++ S++ + ++G +D + KP E+LARV A R+ Sbjct: 61 QVLRALRTAHQSPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHVP 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 R + + + + G+ L R+E +L L + G+ V +T I S ++G+ Sbjct: 121 VFTRLTINGLDMDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWGI- 179 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + E N V+ I +LR K+ + + R +GY + Sbjct: 180 NFDSETNTVDVAIRRLRAKVDEPFEKKLIMTVRGMGYRL 218 >gi|297569540|ref|YP_003690884.1| two component transcriptional regulator, winged helix family [Desulfurivibrio alkaliphilus AHT2] gi|296925455|gb|ADH86265.1| two component transcriptional regulator, winged helix family [Desulfurivibrio alkaliphilus AHT2] Length = 237 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 45/227 (19%), Positives = 87/227 (38%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D ++ G + ++ E L D+ ++ L G ++ Sbjct: 12 ILIVEDDENIQQLVGYNLVKAGFQVIYADNGEQALALVQREAPDLVVLDVMLPGMDGYQI 71 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R H +P+I ++ D G DD + KP + +++RV + RR + Sbjct: 72 CKTLRRDPRHRWLPIIMLTARSDDDDVTAGLDQGADDYITKPFSPKILVSRVKSALRRSR 131 Query: 121 VSNNRAE-------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + I + VQ + L E ILE L G ++ QI Sbjct: 132 ELDQDEDGGVLRLTEAGIVIDPRRHQVLVQDKPVSLTISEFSILELLARRPGWVFSRQQI 191 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + G +D A+ V+ + LRKKL +++ R +GY + Sbjct: 192 IDTVRG-YDYAITPRAVDVQVFGLRKKLGQAGA--CIETVRGVGYRL 235 >gi|256371361|ref|YP_003109185.1| two component transcriptional regulator, winged helix family [Acidimicrobium ferrooxidans DSM 10331] gi|256007945|gb|ACU53512.1| two component transcriptional regulator, winged helix family [Acidimicrobium ferrooxidans DSM 10331] Length = 237 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 54/222 (24%), Positives = 95/222 (42%), Gaps = 8/222 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + +G + +S + + + D+ ++ G Sbjct: 14 LVVDDELPITELLQMALTFEGYDVSVASSGREALDVLRTVKPDLLILDVM--MPGMDGFT 71 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R +R P++ ++ +++ + G DD V KP E++ARV AI RR Sbjct: 72 LLRRLREERNDVPVLLLTAKDAVEDRVQGLQLGSDDYVTKPFSLAELVARVEAILRRSGQ 131 Query: 122 SNNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + D G L E ++L YLM N K V+K QI ++ Sbjct: 132 GTGAPTRIVVGDLVLDEDAHQVLRAGHEIELTATEFKLLRYLMLNANKVVSKAQILDHVW 191 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D + N+VE++IS LRKKL + G + + R +GYS+ Sbjct: 192 -QYDFGGDANIVETYISYLRKKL-DGYGPPMIKTVRGVGYSL 231 >gi|148241878|ref|YP_001227035.1| two-component system response regulator, phosphate sensing PhoB [Synechococcus sp. RCC307] gi|147850188|emb|CAK27682.1| Two-component system response regulator, phosphate sensing PhoB [Synechococcus sp. RCC307] Length = 241 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 46/228 (20%), Positives = 90/228 (39%), Gaps = 10/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR--EDVSAIEAFLIGKGEK 59 ++++D +++ +G ++ S + + L+ G Sbjct: 14 LLVVEDDDTIRETIAEALSSEGFEVDAVGSGSTALERFKGSPDNPSCDLVLLDLMLPGVS 73 Query: 60 VLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 L++ R +R P+I +S S + + G DD + KP RE++AR A+ RR Sbjct: 74 GLDVCRYMRRRGFSTPIIVVSARDSETDRVVGLEIGADDYLVKPFGMRELVARCRALLRR 133 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQG-----EVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + +R PE + L +E R+LE M + + ++ ++ Sbjct: 134 SARNGDSGAKEVLRFDEITLYPEECRVTRGGQEVNLSPKEYRLLEVFMQSPKRVWSRDKL 193 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++G+ D + V+ HI LR+KL N + + R GY Sbjct: 194 LERVWGI-DFMGDSKTVDVHIRWLREKLETNPSAPTYILTVRGFGYRF 240 >gi|317056207|ref|YP_004104674.1| winged helix family two component transcriptional regulator [Ruminococcus albus 7] gi|315448476|gb|ADU22040.1| two component transcriptional regulator, winged helix family [Ruminococcus albus 7] Length = 224 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 48/226 (21%), Positives = 89/226 (39%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +G + + D+ ++ Sbjct: 4 ILIVDDEPDIITLISRYAEREGYEVVTAEDGSQAIDICRKEDFDLIVMDIM--MPDTDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + I+ +P+I +S + L F+ GVDD V KP RE++AR+ A+ R K Sbjct: 62 TACKKIKEFKDIPVIMLSARGTEFDKLFGFEVGVDDYVTKPFSPRELMARIKAVINRSKT 121 Query: 122 SNNRA-----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + G + + + G V G L +E +L + + NRG + + QI + Sbjct: 122 DVSENDSGIVNIGGMEIDTFGLTVTVDGTRNELTAKEYALLMFFVNNRGIVLTRDQILNE 181 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 ++G +D + V+ I LR KL D + + R +GY + Sbjct: 182 VWG-YDSFGVDRTVDWQIKLLRSKLG--SCRDCIKTVRGVGYKFEV 224 >gi|291298109|ref|YP_003509387.1| winged helix family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290567329|gb|ADD40294.1| two component transcriptional regulator, winged helix family [Stackebrandtia nassauensis DSM 44728] Length = 226 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 52/224 (23%), Positives = 96/224 (42%), Gaps = 8/224 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D D + +G + + A D+ ++ L K E Sbjct: 5 LVVEDEESFSDALSYMLRKEGFEVAVAATGNEALKEYEKAGADIVLLDLMLPEK--SGTE 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +R S VP+I ++ S + + G DD + KP RE++AR+ A+ RR Sbjct: 63 VCRELRTTSNVPIIMVTARDSEVDKVVGLEIGADDYITKPYSPRELVARIRAVLRRNAEP 122 Query: 123 NNRAETG----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + T P+R+ D V G PLP +E +LE + N G+ + + Q+ ++ Sbjct: 123 TDPMVTVLESGPVRMDVDRHVVSVGGAEIPLPLKEFELLEMFLRNSGRVLTRGQLIDRVW 182 Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 G D + ++ H+ +LR K+ + + R LGY + Sbjct: 183 GA-DYVGDTKTLDVHVKRLRSKIETEPGRPRHLVTVRGLGYKFE 225 >gi|219848261|ref|YP_002462694.1| winged helix family two component transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219542520|gb|ACL24258.1| two component transcriptional regulator, winged helix family [Chloroflexus aggregans DSM 9485] Length = 225 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 46/221 (20%), Positives = 97/221 (43%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + +G ++ + S+ D+ ++ L Sbjct: 4 ILIIEDETEIASYLRRGLSLEGYHVDVAFDGLQGLEMASTGNYDLVVLDLML--PVIDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IRA S VP+I ++ +++ + ++G DD + KP E+LAR+ A RR + Sbjct: 62 EVARRIRAASNVPIIMLTARDAVRDRVAGLEAGADDYLVKPFAFEELLARIRAQLRRQQT 121 Query: 122 SNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++ + + + R+ V L +E +LE M + + + + I+ ++ Sbjct: 122 YQHQEVLRFANLTLDTRSRELRVGDRRVELTAKEYDLLELFMRHPNQVLTRDVIYDRVW- 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D E N++E ++ LR+KL + + R +GY + Sbjct: 181 NYDFGGESNIIEVYVRYLRQKLEANGEPRLIHTVRSVGYIL 221 >gi|325957425|ref|YP_004292837.1| response regulator [Lactobacillus acidophilus 30SC] gi|325333990|gb|ADZ07898.1| response regulator [Lactobacillus acidophilus 30SC] Length = 233 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 43/226 (19%), Positives = 85/226 (37%), Gaps = 11/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D V G +G + + L + ++ L + Sbjct: 8 ILLVEDEEAVASFVKTELGFEGYQVIWAQDGKEALELFQKEDPTLILLDWML--PVYDGI 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAA 114 + R IR S VP+I ++ S D G+DD + KP E+ R+ Sbjct: 66 TVLRRIRKQSDVPIIMLTAKNSASDISSALDQGLDDYITKPFEIEELFARIRVILRRLKK 125 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + GP+++ + E L +E ++ LM + K ++ ++ Sbjct: 126 TQEQNVAPTSTFTFGPLKIDLVKHEFYCNDEKIYLTPKEFALMTELMQDPEKVKSRDELL 185 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G +D + N V+ +I +R KL + + R LGY + Sbjct: 186 DVVWG-YDFVGQTNTVDVYIRTIRNKLGEPY-KKLIKTVRGLGYCL 229 >gi|311897404|dbj|BAJ29812.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 249 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 52/230 (22%), Positives = 99/230 (43%), Gaps = 14/230 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ A G + + + ++ R D+ ++ L Sbjct: 17 LLVVDDEPNIRELLSASLRFSGFRVASAATGQEALDAVAAERPDLVVLDVML--PDLDGF 74 Query: 62 ELPRIIRAHSQV-------PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114 + R +R +Q P++ ++ + G DD V KP E++AR+ A Sbjct: 75 TVVRRLRDQTQWPQSPEHVPVLFLTAKDGTGDKVQGLAVGADDYVTKPFSLEELIARIRA 134 Query: 115 IYRRLKVSNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 I RR + + + + G L E ++L YLMAN G+ V+K Q Sbjct: 135 ILRRAGGPADDGRLVVADLTLDPAAHEVTRGGVPVSLSPTEFKLLHYLMANVGRVVSKAQ 194 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKL--GFDPVDSKRFLGYSI 220 I ++ +D + ++VES+IS LR+KL + G + + R +GY++ Sbjct: 195 ILDHVW-AYDFGGDLSIVESYISYLRRKLDSGPGHGPKLIHTVRGIGYAL 243 >gi|70726425|ref|YP_253339.1| respiratory response protein [Staphylococcus haemolyticus JCSC1435] gi|68447149|dbj|BAE04733.1| staphylococcal respiratory response protein [Staphylococcus haemolyticus JCSC1435] Length = 241 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 35/232 (15%), Positives = 87/232 (37%), Gaps = 14/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ + ++ ++ + L ++ L + Sbjct: 5 ILIVDDEDRIRRLLKLYLKRESFTIHEASNGKEAYNLAIENDYACILLDLML--PEMDGI 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112 E+ +R H P+I ++ ++ F+SG DD + KP RE + Sbjct: 63 EVASKLREHKDTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQS 122 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + + + E + + +D + L +E +L YL K + Q Sbjct: 123 SKPEQSEPHARDVIEFNHLIIDNDAHRVLADNQQVNLTPKEYELLIYLAKTPNKVFDREQ 182 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSIDW 222 + ++ ++ + V++H+ +LR+KL ++ + + +GY + Sbjct: 183 LLKEVW-HYEFYGDLRTVDTHVKRLREKLNRVSEDAAHMIQTVWGVGYKFEV 233 >gi|307299746|ref|ZP_07579539.1| two component transcriptional regulator, winged helix family [Thermotogales bacterium mesG1.Ag.4.2] gi|306914612|gb|EFN45005.1| two component transcriptional regulator, winged helix family [Thermotogales bacterium mesG1.Ag.4.2] Length = 229 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 53/227 (23%), Positives = 106/227 (46%), Gaps = 9/227 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + +G +G + S+ + + S D++ ++ L Sbjct: 4 ILLVEDDENLANGISYALTQEGWATTLAGSVSYALEMLESGDFDLALLDVML--PDGNGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL + IR S++P+I ++ + +SG DD V KP RE+++R+ A RR++ Sbjct: 62 ELCKKIRERSEMPIIFLTARDEEVNIVMGLESGADDYVTKPFRLRELISRIKANARRIQK 121 Query: 122 SNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + ++GP+ + + G+ L E +IL LM N G + + ++ + Sbjct: 122 RSVEEGGSLKSGPLELNTSKLRAYRSGKEIILTPTEFKILRTLMENEGIVLGRDRLLQKV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDWN 223 + + E +++N + HI KLR+K+ + +++ R LGY WN Sbjct: 182 WDVDGEFIDDNTLSVHIRKLREKVEEDPSKPKLIETLRGLGYR--WN 226 >gi|239930403|ref|ZP_04687356.1| two-component systen response regulator [Streptomyces ghanaensis ATCC 14672] gi|291438761|ref|ZP_06578151.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291341656|gb|EFE68612.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 246 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 50/229 (21%), Positives = 91/229 (39%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V++ +G E +S R D+ ++ L Sbjct: 15 ILIVDDEPAVREALQRSLAFEGYDTEVAVDGADALEKAASYRPDLLVLDI--QMPRMDGL 72 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 R IR A P++ ++ ++ + D+G DD + KP E+ AR+ A+ RR Sbjct: 73 TAARRIRSAGDTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSS 132 Query: 121 VSNNRAETGPIR---------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + A + + R+ G L R E +LE MA+ + + + Sbjct: 133 YAAAVAASAESDDVLAFGDLSMNLATREVVRGGRPVELTRTEFTLLEMFMAHPRQVLTRE 192 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 QI A++G FD N ++ ++ LR+K V + R +GY + Sbjct: 193 QILKAVWG-FDFEPSSNSLDVYVMYLRRKTEAGGEPRLVHTVRGVGYVL 240 >gi|227505512|ref|ZP_03935561.1| two component system response regulator [Corynebacterium striatum ATCC 6940] gi|227197876|gb|EEI77924.1| two component system response regulator [Corynebacterium striatum ATCC 6940] Length = 231 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 40/222 (18%), Positives = 87/222 (39%), Gaps = 7/222 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + +G D+ ++ L G + Sbjct: 5 ILVVDDDPAISEMLTIVLEAEGFEPIAVTDGNEAVPAFQENDPDLILLDLML--PGMNGV 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R IR S VP++ ++ + +SG DD + KP +E++AR+ A RR Sbjct: 63 DICRAIRTESSVPIVMLTAKTDTVDVVLGLESGADDYITKPFKPKELIARIRARLRRTDS 122 Query: 122 SNN---RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 +++ + + GE L E +L + G+ + + +++ Sbjct: 123 ASSGELIEVGDLVIDVPEHTVTRAGGEEISLTPLEFDLLLEMARKPGQVHTREALLESVW 182 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVD-SKRFLGYS 219 G + A + +V H+ +LR K+ + + + R +GY Sbjct: 183 G-YRHASDTRLVNVHVQRLRAKIEHDPEDPQIVLTVRGVGYK 223 >gi|41407014|ref|NP_959850.1| hypothetical protein MAP0916 [Mycobacterium avium subsp. paratuberculosis K-10] gi|118464125|ref|YP_880347.1| two component response transcriptional regulator MprA [Mycobacterium avium 104] gi|254773974|ref|ZP_05215490.1| two component response transcriptional regulatory protein MprA [Mycobacterium avium subsp. avium ATCC 25291] gi|81700688|sp|Q742C1|MPRA_MYCPA RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial persistence regulator A gi|160012422|sp|A0QBQ9|MPRA_MYCA1 RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial persistence regulator A gi|41395365|gb|AAS03233.1| hypothetical protein MAP_0916 [Mycobacterium avium subsp. paratuberculosis K-10] gi|118165412|gb|ABK66309.1| mycobacterial persistence regulator mrpa [Mycobacterium avium 104] Length = 228 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 50/224 (22%), Positives = 98/224 (43%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V++ +G S+E + + +S R D ++ L Sbjct: 3 ILVVDDDRAVRESLRRSLSFNGYSVELAHDGVEALDMIASDRPDALVLDVM--MPRLDGL 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +R+ P++ ++ S+ + D+G DD + KP E+LAR+ A+ RR K Sbjct: 61 EVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTK 120 Query: 121 VSNN----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 ++ + + R+ L R E +LE L+AN + + +++I Sbjct: 121 PEDDAESVAMTFSDLTLDPVTREVTRGQRRISLTRTEFALLEMLIANPRRVLTRSRILEE 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G FD N +E ++ LR+K + + R +GY + Sbjct: 181 VWG-FDFPTSGNALEVYVGYLRRKTEADGEPRLIHTVRGVGYVL 223 >gi|296393679|ref|YP_003658563.1| transcriptional regulator [Segniliparus rotundus DSM 44985] gi|296180826|gb|ADG97732.1| two component transcriptional regulator, winged helix family [Segniliparus rotundus DSM 44985] Length = 228 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 49/224 (21%), Positives = 90/224 (40%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V+D +G ++ + R D ++ G L Sbjct: 3 ILVVDDDRAVRDSLRRSLLFNGYAVRTAENGAEALSQVLECRPDAMVLDVM--MPGLDGL 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +R+ P++ ++ ++ + D+G DD + KP E+LARV A+ RR Sbjct: 61 EVCRRLRSAGDDLPILVLTARDTVSERVAGLDAGADDYLPKPFALEELLARVRALLRRRT 120 Query: 121 VSNNRAETGPIR----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + RD L R E +LE LM N + + +T++ Sbjct: 121 PQAEPGAETLAFLDLSLDPATRDVRRGDREISLTRTEFALLEMLMENPRRVLTRTRLLEE 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G +D N +E +I LR+K + + R +GY + Sbjct: 181 VWG-YDFPTSGNALEVYIGYLRRKTEADGENRLIHTVRGVGYVL 223 >gi|227487786|ref|ZP_03918102.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867] gi|227542427|ref|ZP_03972476.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866] gi|227092288|gb|EEI27600.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867] gi|227181625|gb|EEI62597.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866] Length = 230 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 51/226 (22%), Positives = 93/226 (41%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD V++ +G + L + + ++ L Sbjct: 3 ILVADDEQAVRESLRRSLTFNGYEVVLAEDGAQAVELIEKEQPTLVILDVM--MPQMDGL 60 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +R+ P++ ++ + + D+G DD + KP E+LARV +++RR Sbjct: 61 EVCRTLRSTGDDRPILLLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLFRRSI 120 Query: 121 VSNNRAETGPIRVF------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + E F D RD G+ L R E +LEYLM N K ++++ I Sbjct: 121 TESQAPEQPKELEFEDLVLNPDTRDVTRGGKPISLTRTEFALLEYLMRNPRKVLSRSDIL 180 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G ++ N +E +I LRKK + + R +GY + Sbjct: 181 EEVWG-YNFPTSGNALEVYIGYLRKKTEANGESRLIHTVRGVGYVL 225 >gi|194467421|ref|ZP_03073408.1| two component transcriptional regulator, winged helix family [Lactobacillus reuteri 100-23] gi|194454457|gb|EDX43354.1| two component transcriptional regulator, winged helix family [Lactobacillus reuteri 100-23] Length = 235 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 48/228 (21%), Positives = 98/228 (42%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + E + D+ ++ L L Sbjct: 5 ILVVDDEKPISDIIKFNLEKEGYEVVVAYDGEVALEQVEAENPDLIILDLML--PKIDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 E+ + +RA +P+I ++ S + + G DD V KP +RE++ARV A RR Sbjct: 63 EVAKRVRAKHTMPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQAT 122 Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + +N + G + + + +GE L RE +L YL + G+ + + + Sbjct: 123 LKAPAEEENNTDIQIGDLTIHPEAYTVTKRGENINLTHREFELLHYLAQHIGQVINREHL 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++G +D + V+ + +LR+K+ + + ++R +GY + Sbjct: 183 LQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPQWLITRRGVGYYL 229 >gi|326201109|ref|ZP_08190981.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] gi|325988677|gb|EGD49501.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] Length = 226 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 46/222 (20%), Positives = 91/222 (40%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD ++ G ++ ++ + +E +S + ++ Sbjct: 6 ILIADDEERMRRLVADFLKKQGYAVIEADNGMKALQIIIEQKETISLVILDVMMPIMDGW 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-HREILARVAAIYRRLK 120 E R IR +S+VP+I ++ + L F G D+ + KP + A + R Sbjct: 66 EALRSIRQYSKVPVIMLTAKCTEADELLSFGIGADEYITKPFSLMILLARVQALLKRLNI 125 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 N + + + V G+ L +E +L YL N G +++ +I ++++ Sbjct: 126 NINGKKSFDGLEIDLPAHTVHVSGQEIELTPKEFELLLYLCDNDGIALSREKILNSVWD- 184 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + + V++HI KLR KL K D + + R LGY + Sbjct: 185 YGYFGDVRTVDTHIKKLRLKLGEKG--DFIQTIRGLGYKFEV 224 >gi|67906524|gb|AAY82630.1| predicted response regulator [uncultured bacterium MedeBAC49C08] Length = 229 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 45/224 (20%), Positives = 95/224 (42%), Gaps = 8/224 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61 +L++D + +G S+E + + L D+ ++ L G ++ Sbjct: 6 LLVEDEPDLNQTVAFNLDSEGYSVESAFNGKEALKLIEEKTPDLILLDLMLPDMSGLEIC 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R + P++ ++ + F+ G DD + KP RE + RVAA+ +R Sbjct: 66 RILRSSKKTKNTPIMMVTAKGEEIDRIVGFELGADDYIVKPFSIREFMLRVAAMLKRSGD 125 Query: 122 SNNRAETGPIR----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 N E I + +++ + PL +E +L YL+ G+ + + + Sbjct: 126 KINNDEEKIIFGSLEIDIAAHRVKLKDKEVPLTAKEFSLLHYLVERIGRVSTRDALLDDV 185 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +G ++ V V++H+ +LR KL + +++ R +GY + Sbjct: 186 WG-YNCEVTTRTVDTHVKRLRAKLSDVGNN--IETVRGVGYRFN 226 >gi|37522708|ref|NP_926085.1| two-component response regulator [Gloeobacter violaceus PCC 7421] gi|35213710|dbj|BAC91080.1| two-component response regulator [Gloeobacter violaceus PCC 7421] Length = 229 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 37/223 (16%), Positives = 81/223 (36%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G ++ L + ++ L L Sbjct: 5 ILVVEDDETLAQVLRKTLESEGYTVTLARDGRAALELGREPGLQLIILDLML--PRMSGL 62 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118 E+ + +R + P+I ++ + G DD ++KP + E+ Sbjct: 63 EVCQRLRSENVVTPIIMLTARGLDTDKVFGLRLGADDYLSKPFNIDELLARIEAVLRRTH 122 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + G + + + L RE ++LE L + G+ V + +I+ ++ Sbjct: 123 QSKPSQHVSVGDLEIDFQRLSVCKNRQKLDLSSREFQVLECLFRSAGQTVDREKIYQEVW 182 Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 G +D AV ++ HI++LR KL + + + GY Sbjct: 183 G-YDTAVTNRTIDFHIARLRSKLEDNPKEPRYILTVHGSGYRF 224 >gi|302552346|ref|ZP_07304688.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces viridochromogenes DSM 40736] gi|302469964|gb|EFL33057.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces viridochromogenes DSM 40736] Length = 226 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 52/224 (23%), Positives = 95/224 (42%), Gaps = 8/224 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D D + +G + + D+ ++ L G E Sbjct: 5 LVVEDEESFSDALSYMLRKEGFEVAVATTGPDGLDEFERNGADLVLLDLML--PGLPGTE 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +R S VP+I ++ S + + G DD V KP RE++AR+ A+ RR Sbjct: 63 VCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGEP 122 Query: 123 NNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 GP+R+ D V G LP +E +LE L+ N G+ + + Q+ ++ Sbjct: 123 EEVTPAALEAGPVRMDVDRHVVTVGGTKIDLPLKEFDLLEMLLRNAGRVLTRMQLIDRVW 182 Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 G D + ++ H+ +LR K+ + + + R LGY + Sbjct: 183 GA-DYVGDTKTLDVHVKRLRAKVEPDPGAPRYLVTVRGLGYKFE 225 >gi|300021830|ref|YP_003754441.1| two component transcriptional regulator PhoB, winged helix family [Hyphomicrobium denitrificans ATCC 51888] gi|299523651|gb|ADJ22120.1| two component transcriptional regulator PhoB, winged helix family [Hyphomicrobium denitrificans ATCC 51888] Length = 234 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 48/225 (21%), Positives = 93/225 (41%), Gaps = 8/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A + + +G + E E L + D++ ++ + + Sbjct: 5 IIVVEDEAPLVELLKYNLQSEGYDVVHAADGEEAELLLAEQSYDLAILDWMI--PKISGI 62 Query: 62 ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IY 116 EL R +R +P+I ++ + +G DD V KP +E++AR+ A Sbjct: 63 ELCRRLRNRTETQNLPIILLTARGEEADRVRGLTTGADDYVTKPFSVQELMARIKALLRR 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + ++ +G I + L E R+LE M + + +++ Q+ Sbjct: 123 AAPERMSDILVSGEIVMDRGAHKVTRGAREVRLGPTEYRMLEVFMESPRRVLSRNQLLDR 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G V+E V+ HI +LRK L DP+ + R GY D Sbjct: 183 VWGQS-SEVDERTVDVHIGRLRKSLIRGNESDPIRTVRGAGYVFD 226 >gi|261409749|ref|YP_003245990.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261286212|gb|ACX68183.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] Length = 232 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 52/227 (22%), Positives = 99/227 (43%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A + +G + ++ S D+ ++ L G + Sbjct: 5 ILIVEDEAKISRLLEIELESEGYQVTKADNGVDALEAYRSQEVDLILLDVML--PGMSGI 62 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL R IRAH S ++ ++ S++ + D G +D + KP E+LAR+ A R Sbjct: 63 ELLRRIRAHDSHTAVLLLTAKSSVEDKVSGLDLGANDYITKPFQIEELLARIRAALRLQG 122 Query: 121 VSNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + E + R+ G L RE +L YL+ N+ + + + QI Sbjct: 123 KPHPEEEPAGEWLTAADLKLNEGTREVIRDGRRIDLTPREFDLLVYLLKNKRQVLNREQI 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +A++G +D + NVV+ +I +RKK+ + + + R +GY + Sbjct: 183 LAAVWG-YDYYGDTNVVDVYIRYVRKKIDYGGTQELIHTVRGVGYVL 228 >gi|126695491|ref|YP_001090377.1| two-component response regulator [Prochlorococcus marinus str. MIT 9301] gi|126542534|gb|ABO16776.1| two-component response regulator [Prochlorococcus marinus str. MIT 9301] Length = 248 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 90/228 (39%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD A ++ G + + L D+ ++ Sbjct: 11 ILVADDEASIRRILETRLSMIGYKVVTARDGKEALKLFKDYEPDLVVLDVM--MPKLDGY 68 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + +R S VP++ ++ + + + G DD V KP +E+ AR+ + RR+ Sbjct: 69 GVCQELRKDSDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRIDK 128 Query: 122 SNNRAETG-------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 I++ ++ R E L E +LE L++ G+ ++ +I Sbjct: 129 EQIPGMPNSGLILVTDIKIDTNRRQVFKSDERIRLTGMEFSLLELLVSRSGEPFSRGEIL 188 Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++G + V+ VV+ HIS+LR KL + + + + R GY Sbjct: 189 KEVWGYTPERHVDTRVVDVHISRLRSKLEADPANPELILTARGTGYLF 236 >gi|125974351|ref|YP_001038261.1| two component transcriptional regulator [Clostridium thermocellum ATCC 27405] gi|256005570|ref|ZP_05430530.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 2360] gi|281418898|ref|ZP_06249916.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum JW20] gi|125714576|gb|ABN53068.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum ATCC 27405] gi|255990478|gb|EEU00600.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 2360] gi|281407355|gb|EFB37615.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum JW20] gi|316941509|gb|ADU75543.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 1313] Length = 234 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 44/227 (19%), Positives = 91/227 (40%), Gaps = 10/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + G + + + ++ + ++ L Sbjct: 8 ILVVDDEKKIVEVVKSYLEHSGYEVYEAFTGKEALYVFEKVPLSLIVLDLML--PDLSGE 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ +IIR S+VP+I ++ + L + G DD + KP ++++ARV A+ RR Sbjct: 66 EICKIIRKKSRVPIIMLTAKAEEEDILKGLNIGADDYITKPFSPKQLVARVTAVLRRTSD 125 Query: 122 SN------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 G + + S + V L E +IL L+ GK + ++ + Sbjct: 126 DPVPLSNIFSFNNGDLVIDSLKYEVRKGNNVVNLTPNEYKILMTLVKYPGKTFTRDELIN 185 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 G D + V++HI LR+K+ + + + +GY + Sbjct: 186 MALG-DDFDGFDRTVDTHIKNLRQKIETDPKSPKYILTVHGVGYRFE 231 >gi|332670978|ref|YP_004453986.1| winged helix family transcriptional regulator [Cellulomonas fimi ATCC 484] gi|332340016|gb|AEE46599.1| two component transcriptional regulator, winged helix family [Cellulomonas fimi ATCC 484] Length = 227 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 46/219 (21%), Positives = 88/219 (40%), Gaps = 5/219 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + + +G + + + D+ ++ L G E Sbjct: 6 LVVDDDTALAEMIGIVLRSEGFEPVFCEDGDEALATFRATQPDLVLLDLML--PGRDGNE 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IRA S VP++ ++ + +SG DD ++KP +E++ARV A RR Sbjct: 64 VCRQIRAESGVPIVMLTAKSDTVDVVLGLESGADDYISKPFKPKELVARVRARLRRSDEP 123 Query: 123 NNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 G + + G G L E +L L + + + ++G + Sbjct: 124 APEHLSIGDVSIDVPGHRVARAGRPISLTPLEFDLLVALARKPWQVFTREVLLEKVWG-Y 182 Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219 A + +V H+ +LR K+ N + V + R +GY Sbjct: 183 RHAADTRLVNVHVQRLRSKIENDPEQPEIVVTVRGVGYK 221 >gi|212704970|ref|ZP_03313098.1| hypothetical protein DESPIG_03037 [Desulfovibrio piger ATCC 29098] gi|212671634|gb|EEB32117.1| hypothetical protein DESPIG_03037 [Desulfovibrio piger ATCC 29098] Length = 224 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 45/224 (20%), Positives = 94/224 (41%), Gaps = 10/224 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D ++ +G ++ + +S D+ ++ L G Sbjct: 4 ILVIEDENDIRQLLRFNLEREGFAVLEAADGLGGLHMATSELPDLVVLDLML--PGMDGC 61 Query: 62 ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 ++ R ++A +P++ ++ + G DD V KP RE++ R+ AI RR Sbjct: 62 DVCRRLKAQPVTAAIPVLMLTARGEEVDRIVGLTLGADDYVVKPFSVRELVLRIRAILRR 121 Query: 119 LKVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 G + + + + G+ L E R+LE LM + G + Q+ +A Sbjct: 122 GSRPGMGTALCRGALLLDVEAHRVTLDGQEVALTATEFRLLEDLMRHAGAVRTREQLLNA 181 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + V++H+ +LR KL + +++ R +GY + Sbjct: 182 VWG-YSFEGYARTVDTHVRRLRAKLGEEAAA--LETVRGVGYRL 222 >gi|251796140|ref|YP_003010871.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247543766|gb|ACT00785.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 229 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 42/227 (18%), Positives = 83/227 (36%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + + G ++E + D+ ++ L Sbjct: 4 ILIIEDEKAIAELERDYLESHGFAVEIEGRGDIGLQKALGGSYDLIILDVML--PKLDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR VP++ ++ + G DD + KP E++ARV A R + Sbjct: 62 EICRQIRQTKNVPVLLVTAKKEDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARYER 121 Query: 122 SNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + R + L +E +L L ++ + K ++F Sbjct: 122 LTAERGESHEQIGIRGLLIDVTSRRVTIHDREAMLTSKEYDLLLLLASHPNRVFEKEELF 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 I+GL D + V HI +LR+K+ + +++ +GY Sbjct: 182 ERIWGL-DSNGDAATVTVHIRRLREKIEHDPSNPQYIETIWGVGYRF 227 >gi|229916895|ref|YP_002885541.1| two component transcriptional regulator, winged helix family [Exiguobacterium sp. AT1b] gi|229468324|gb|ACQ70096.1| two component transcriptional regulator, winged helix family [Exiguobacterium sp. AT1b] Length = 229 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 48/225 (21%), Positives = 97/225 (43%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +++DD + +G + ++L+ + + R ++ ++ L + Sbjct: 6 ILIVDDEQDLCTLIQRALEKEGFHEIRTAHTLKDGFDVFETFRPHLAILDVML--PDGEG 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +L + +RA S +P++ +S L G DD + KP +E+ RV A RR+ Sbjct: 64 YQLCQQMRAQSNIPILFLSAKSEEVDKLLGLAIGGDDYITKPFSPKEVAFRVKAQLRRVS 123 Query: 121 VSN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + GP ++ D + V GE L +E +L + N + ++K +F+ Sbjct: 124 MMEAPVAETTTVGPFQMNEDETEVYVNGERLELTAKEVGLLACFLRNPNRILSKETLFTQ 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++G +N V HI +LR+K+ N + + + LGY + Sbjct: 184 VWGES-FFGSDNTVMVHIRRLREKVEPNPSEPTYIKTVKGLGYRL 227 >gi|110799967|ref|YP_697175.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124] gi|110674614|gb|ABG83601.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124] Length = 228 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 44/224 (19%), Positives = 93/224 (41%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + G +++ + + + ++ ++ +I G + Sbjct: 8 ILIVDDDENICEVIKMYLETTGYNVKVDQDGKAAKEEFVNFSPNLVVLD--MILPGIDGM 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118 E+ + IR S VP+I ++ + + G DD V KP +E + V Y Sbjct: 66 EVLKWIRKDSNVPVIMLTAKGETFDKVLALEIGADDYVVKPFEPKELLARVKAVMRRYSG 125 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + N + + ++ GE P +E +L YL +N+ K + Q+ ++ Sbjct: 126 EEPDNVVLNFPGLTIDANSYKVIYNGEEVKTPPKEFELLHYLASNKNKVFTRDQLLCEVW 185 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 G +D + V+ HI +LR+KL N +++ +GY + Sbjct: 186 G-YDYPGDSRTVDVHIKRLREKL-NGGEDWQLETVWGVGYKFEV 227 >gi|327439249|dbj|BAK15614.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Solibacillus silvestris StLB046] Length = 236 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 41/231 (17%), Positives = 89/231 (38%), Gaps = 14/231 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + G + + + D+ ++ L +E Sbjct: 6 LVVEDEMPIATLLKYNLEQAGFDVLLAHDGQAGLDTAVEQSPDLILLDLML--PKLDGVE 63 Query: 63 LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112 + + +R +P+I ++ + + G DD + KP RE Sbjct: 64 VCKELRRLRINIPIIMLTARDDEFDKVLGLELGADDYMTKPFSPREVIARVKAVLRRFSG 123 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + ++ S G ++VF + + + E +E +L YL+ N+ + + + Q Sbjct: 124 PVVEETVESSEVVYTFGNLKVFPERFEAFIDDESLEFTPKEFELLVYLLENKNRVLTRDQ 183 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 + SA++ +D A + +V+ HIS LR K+ + + R LGY + Sbjct: 184 LLSAVW-NYDFAGDTRIVDVHISHLRDKIEENSRKPLYIKTIRGLGYKFEE 233 >gi|322385035|ref|ZP_08058685.1| DNA-binding response regulator [Streptococcus cristatus ATCC 51100] gi|321270945|gb|EFX53855.1| DNA-binding response regulator [Streptococcus cristatus ATCC 51100] Length = 233 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 46/232 (19%), Positives = 95/232 (40%), Gaps = 13/232 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + + + + + D+ ++ L L Sbjct: 4 ILVVDDEKPISDIIKFNMAKEGYEVLTAFDGKEALEMFEAEQPDILILDLML--PEVDGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112 ++ R IR S VP+I +S S + + G DD V KP +RE + + Sbjct: 62 DVARTIRKTSNVPIIVLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKALLRRSEL 121 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + S G +++ D + G+ L RE +L +L + G+ + + Sbjct: 122 IPDSHVDESSPKELFIGDLQILPDAFVVKKHGKELELTHREFELLHHLATHVGQVMTREH 181 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223 + ++G +D + V+ I +LR+K+ + + + ++R +GY I N Sbjct: 182 LLETVWG-YDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYIRNN 232 >gi|294814643|ref|ZP_06773286.1| Transcriptional regulatory protein afsQ1 [Streptomyces clavuligerus ATCC 27064] gi|294327242|gb|EFG08885.1| Transcriptional regulatory protein afsQ1 [Streptomyces clavuligerus ATCC 27064] Length = 231 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 49/222 (22%), Positives = 92/222 (41%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D ++ G + + E L R D+ ++ L G Sbjct: 10 LLLIEDDDAIRTALELSLSRQGHRVATAATGEDGLKLLREQRPDLIVLDVML--PGIDGF 67 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR Q+P+I ++ + +SG DD V KP+ R + AR+ A+ RR + Sbjct: 68 EVCRRIRRTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGER 127 Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + T + GE L E R+L L G+ +++ Q+ ++ Sbjct: 128 EATDSATFGSLVIDRSAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVW-E 186 Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 D + +V++ + +LR K+ + + + R +GY +D Sbjct: 187 HDYLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRLD 228 >gi|311740982|ref|ZP_07714807.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035] gi|311303784|gb|EFQ79862.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035] Length = 235 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 52/234 (22%), Positives = 99/234 (42%), Gaps = 17/234 (7%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + D L +G + ++ D+ ++ L G Sbjct: 4 ILIVEDEESLADPLAFLLRKEGFEPIIAHDGPTALEKFAANDIDIVLLDLML--PGMSGT 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + +R S VP+I ++ S + + G DD V KP RE++AR+ A+ RR Sbjct: 62 EVCKQLRTTSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLRRGHD 121 Query: 122 -------------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 + E G +++ + V GE +P +E +LEYL+ N G+ + Sbjct: 122 SGAGADTEAEEEVTEQLLEGGRVKMDVERHTVTVAGEPVSMPLKEFDLLEYLLRNAGRVL 181 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + Q+ I+G D + ++ H+ +LR K+ + + R LGY + Sbjct: 182 TRGQLIDRIWGA-DYVGDTKTLDVHVKRLRSKIEEQPSRPKHLVTVRGLGYKFE 234 >gi|114569034|ref|YP_755714.1| two component transcriptional regulator [Maricaulis maris MCS10] gi|114339496|gb|ABI64776.1| two component transcriptional regulator, winged helix family [Maricaulis maris MCS10] Length = 229 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 57/224 (25%), Positives = 99/224 (44%), Gaps = 4/224 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVL 61 ++++D + +G S+ E D+ ++ L G +V Sbjct: 6 LVVEDEDALATLLQYNLEKEGYSVAVARDGEDALMQAEETTPDLVMVDWMLPKVSGIEVC 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 R + + VP+I ++ + D+G DD V KP E+ AR+ A+ RR++ Sbjct: 66 RRLRGRQETANVPIIMLTARGEETDRVRGLDTGADDYVVKPFSMTELFARIRAVLRRIRP 125 Query: 122 --SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + E G I + + L E R+L+YLM + G+ ++ Q+ A++G Sbjct: 126 GLAEDVIEAGDITMDRVAHRVKRADREIHLGPTEFRLLDYLMQHPGRVFSREQLLDAVWG 185 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 D VE V+ H+ +LRK L NK DP+ + R GY+ D N Sbjct: 186 -SDVYVEARTVDVHVGRLRKALNNKEERDPIRTVRSAGYAFDVN 228 >gi|323484018|ref|ZP_08089390.1| response regulator [Clostridium symbiosum WAL-14163] gi|323693384|ref|ZP_08107598.1| response regulator [Clostridium symbiosum WAL-14673] gi|323402659|gb|EGA94985.1| response regulator [Clostridium symbiosum WAL-14163] gi|323502533|gb|EGB18381.1| response regulator [Clostridium symbiosum WAL-14673] Length = 227 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 40/223 (17%), Positives = 90/223 (40%), Gaps = 3/223 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 L++D + L +G ++ + + + D++ ++ L Sbjct: 4 IFLVEDDKAIAKNLTLLLRSEGFTVSHAATRGEASAMLAGNLFDLALVDIAL--PDGNGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + I+ Q+P++ ++ + + + G DD + KP RE++AR+ A R+ + Sbjct: 62 TVCTEIKERYQIPVLFLTASGDEASVVTGLNMGADDYITKPFRPRELIARIRAALRKQER 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + E + V + G L E R+L M N + ++++ ++ Sbjct: 122 AGQAFEVCGLCVDTASGVVTKYGREIFLSALEYRLLLIFMNNPKNIITRSRLLDELWDAA 181 Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223 E V +N + +I +LR+K+ + + + R GY + N Sbjct: 182 GEFVNDNTLTVYIKRLREKIENDPANPQIILTVRGTGYRLGGN 224 >gi|322616467|gb|EFY13376.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322619718|gb|EFY16593.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322622586|gb|EFY19431.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629736|gb|EFY26511.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632543|gb|EFY29289.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636962|gb|EFY33665.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322641500|gb|EFY38138.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322646035|gb|EFY42551.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649665|gb|EFY46096.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322654035|gb|EFY50358.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658568|gb|EFY54830.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663425|gb|EFY59627.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322670159|gb|EFY66299.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322671396|gb|EFY67518.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322676753|gb|EFY72820.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682676|gb|EFY78695.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686356|gb|EFY82338.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323195686|gb|EFZ80862.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323199834|gb|EFZ84923.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202827|gb|EFZ87863.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323209097|gb|EFZ94034.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323210902|gb|EFZ95768.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217943|gb|EGA02658.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323222390|gb|EGA06767.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323226550|gb|EGA10755.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323229745|gb|EGA13868.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323232970|gb|EGA17066.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240705|gb|EGA24747.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323243019|gb|EGA27040.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323247540|gb|EGA31494.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252711|gb|EGA36549.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323259127|gb|EGA42771.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323259947|gb|EGA43575.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323268051|gb|EGA51530.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269901|gb|EGA53350.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 226 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 47/219 (21%), Positives = 92/219 (42%), Gaps = 3/219 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D + G ++ L + ++ L G Sbjct: 3 ILLIEDNQKTIQWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIML--PGLDGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R +R Q P+I ++ S++ + ++G +D + KP E+LARV A R+ Sbjct: 61 QVLRALRTAHQSPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHVP 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 R + + + + G+ L R+E +L L + G+ V +T I S ++G+ Sbjct: 121 VFTRLTINGLDMDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWGI- 179 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + E N V+ I +LR K+ + + + R +GY + Sbjct: 180 NFDSETNTVDVAIRRLRAKVDDPFEKKLIMTVRGMGYRL 218 >gi|194444465|ref|YP_002040351.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194403128|gb|ACF63350.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 226 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 47/219 (21%), Positives = 93/219 (42%), Gaps = 3/219 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D + + G ++ L + ++ L G Sbjct: 3 ILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIML--PGLDGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R +R Q P+I ++ S++ + ++G +D + KP E+LARV A R+ Sbjct: 61 QVLRALRTAHQSPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHVP 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 R + + + + G+ L R+E +L L + G+ V +T I S ++G+ Sbjct: 121 VFTRLTINGLDMDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWGI- 179 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + E N V+ I +LR K+ + + + R +GY + Sbjct: 180 NFDSETNTVDVAIRRLRAKVDDPFENKLIMTVRGMGYRL 218 >gi|86747907|ref|YP_484403.1| two component transcriptional regulator [Rhodopseudomonas palustris HaA2] gi|86570935|gb|ABD05492.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris HaA2] Length = 233 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 52/225 (23%), Positives = 94/225 (41%), Gaps = 8/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + DG +E + + D+ ++ L G + Sbjct: 5 ILVVEDEEALTTLLRYNLESDGYDVETVARGDDADTRMKERLPDLVVLDWML--PGLSGI 62 Query: 62 ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IY 116 EL R +RA Q+P+I ++ + +G DD + KP E+LARV Sbjct: 63 ELCRRLRARTDTKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLLRR 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + G + + D R G L E R+LE+ + + G+ ++ Q+ Sbjct: 123 AAPERLATVLTYGDLELDRDKRRVARSGRPIDLGPTEYRLLEFFLEHPGRVFSREQLLDG 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G D ++E V+ HI +LRK L DP+ + R GY++D Sbjct: 183 VWGR-DIYIDERTVDVHIGRLRKLLNPGREQDPIRTVRGAGYALD 226 >gi|182437750|ref|YP_001825469.1| putative two-component systen response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|178466266|dbj|BAG20786.1| putative two-component systen response regulator [Streptomyces griseus subsp. griseus NBRC 13350] Length = 245 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 46/230 (20%), Positives = 92/230 (40%), Gaps = 14/230 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V++ +G + + + D+ ++ L Sbjct: 11 ILIVDDEPAVREALQRSLAFEGYGTQVAVDGYDALAMAEAYDPDLIVLDI--QMPRMDGL 68 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 R IRA S P++ ++ ++ + D+G DD + KP E+ AR+ A+ RR Sbjct: 69 TAARRIRATGSTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSS 128 Query: 121 VSNNRAETGPI----------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + + A R+ R+ L R E +LE +++ + + + Sbjct: 129 YAASAAGADAPDDDVLSFADLRMDLATREVTRGERRVELTRTEFTLLEMFLSHPRQVLTR 188 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 QI A++G FD N ++ ++ LR+K V + R +GY++ Sbjct: 189 EQILKAVWG-FDFEPSSNSLDVYVMYLRRKTEAGGEPRLVHTVRGVGYAL 237 >gi|323340181|ref|ZP_08080445.1| response regulator [Lactobacillus ruminis ATCC 25644] gi|323092372|gb|EFZ34980.1| response regulator [Lactobacillus ruminis ATCC 25644] Length = 245 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 48/235 (20%), Positives = 95/235 (40%), Gaps = 18/235 (7%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + G S++ + + + + D ++ L G + Sbjct: 10 ILVVDDEKAIVTLLEYNLKKAGYSVDTVSEGVSAYNMAVTGKYDFILLDLML--PGMDGI 67 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119 E+ R +R P+I ++ + + G DD + KP RE++AR+ AI RR+ Sbjct: 68 EITRRLRQERIETPIIILTARDQEYDKIIGLELGADDYLTKPFSPREVIARIKAISRRIT 127 Query: 120 ------------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167 KV E V GE L +E +L Y + G+ Sbjct: 128 SSSDEGGASQPAKVEKEFYEYAGFTVDLAKVSVARNGERVKLTPKEFELLAYFVKRPGRV 187 Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 +++ ++ + ++G +D + +V+ H+S LR+KL + + + R GY + Sbjct: 188 LSREKLLNGVWG-YDYVGQTRMVDMHVSHLREKLEDDPKHPVYIQTARGFGYRFN 241 >gi|56461211|ref|YP_156492.1| positive response regulator for pho regulon (CheY-wHTH) [Idiomarina loihiensis L2TR] gi|56180221|gb|AAV82943.1| Positive response regulator for pho regulon (CheY-wHTH) [Idiomarina loihiensis L2TR] Length = 228 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 39/224 (17%), Positives = 88/224 (39%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A +++ + G N + + D+ ++ L G L Sbjct: 5 ILIVEDEAPIREMLSFVMEQHGYQAVEANDFDAAVDKIAEPYPDMVLLDWML--PGGSGL 62 Query: 62 ELPRII---RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL--ARVAAIY 116 +L + I +P+I ++ + + + G DD + KP +E++ R Sbjct: 63 QLAKKIKGDDFTRNIPIIMLTARGEEEDKVKGLEVGADDYITKPFSPKELMARMRAVFRR 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 V + E +++ V + + E ++L + M + + ++ Q+ Sbjct: 123 VAPTVLDEPLEVEGLKLDPVSHRISVDDKGIDMGPTEFKLLHFFMTHPERVYSREQLLDH 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + VE+ V+ HI +LRK L + + R +GY Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALTEHGYDRLIQTVRGVGYRF 225 >gi|149202581|ref|ZP_01879553.1| phosphate regulon transcriptional regulatory protein PhoB [Roseovarius sp. TM1035] gi|149143863|gb|EDM31897.1| phosphate regulon transcriptional regulatory protein PhoB [Roseovarius sp. TM1035] Length = 229 Score = 150 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 48/221 (21%), Positives = 92/221 (41%), Gaps = 4/221 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVL 61 +L++D ++ DG + ++ E + + D+ ++ + G +V Sbjct: 9 LLVEDEPAQREVLGYNLQADGFHVLTASNGEEALLMVAEMPPDIIVLDWMMPNVSGIEVC 68 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + +P+I +S + ++G DD V KP E++ARV A RR + Sbjct: 69 RQLKTRSETRGIPIIMLSARSEEVDRVRGLETGADDYVIKPYSLVELMARVRAQLRRTRP 128 Query: 122 SNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + I + ++ + L E R+L M G+ ++ Q+ ++G Sbjct: 129 ATVGERLEYLDIVLDAETHRVTRCEKPLKLGPTEFRLLSTFMEKPGRVWSREQLLDRVWG 188 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D V+ V+ HI +LRK L G DP+ + R GY++ Sbjct: 189 R-DIYVDTRTVDVHIGRLRKALCQHGGDDPLRTVRGAGYAL 228 >gi|91794040|ref|YP_563691.1| phosphate regulon transcriptional regulatory protein phoB [Shewanella denitrificans OS217] gi|91716042|gb|ABE55968.1| two component transcriptional regulator, winged helix family [Shewanella denitrificans OS217] Length = 229 Score = 150 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 35/224 (15%), Positives = 86/224 (38%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +++ I + G + + L D+ ++ G + Sbjct: 5 ILIVEDESAIREMLIFVMEQHGFTTVAAEDFDSAIGLLQEPYPDLILLDWM--FPGGSGI 62 Query: 62 ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIY 116 +L + ++ +P+I ++ + + + G DD + KP +E+ + Sbjct: 63 QLAKRLKQDKFTRQIPIIMLTARGEEEDKVKGLEVGADDYITKPFSPKELVARIKAVLRR 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + +++ V V + E R+L + M + + ++ Q+ Sbjct: 123 SAPTRLEETIDVQGLQLDPVSHRVCVGDSVLDMGPTEFRLLHFFMTHPERVYSREQLLDN 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + VE+ V+ HI +LRK + N + + R GY Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKAVENTGHDRLIQTVRGAGYRF 225 >gi|226307885|ref|YP_002767845.1| two-component response regulator MprA [Rhodococcus erythropolis PR4] gi|229495087|ref|ZP_04388833.1| response regulator [Rhodococcus erythropolis SK121] gi|226187002|dbj|BAH35106.1| two-component response regulator MprA [Rhodococcus erythropolis PR4] gi|229318018|gb|EEN83893.1| response regulator [Rhodococcus erythropolis SK121] Length = 228 Score = 150 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 93/224 (41%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V++ +G ++E + R D ++ L Sbjct: 3 ILVVDDDRAVRESLRRSLSFNGYTVELAVDGLDALEKILANRPDAVVLDVM--MPRLDGL 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +R+ P++ ++ S+ + D+G DD + KP E+LAR+ A+ RR Sbjct: 61 EVCRRLRSAGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARLRALLRRTA 120 Query: 121 V----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + + R+ + L R E +LE LMAN + + + +I Sbjct: 121 PDLDADSEMMAFEDLTLDPVTREVKRGERSISLTRTEFSLLEMLMANPRRVLTRGRILEE 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G +D N +E ++ LR+K + + R +GY + Sbjct: 181 VWG-YDFPTSGNALEVYVGYLRRKTEADGEPRLIHTVRGVGYVL 223 >gi|225028064|ref|ZP_03717256.1| hypothetical protein EUBHAL_02333 [Eubacterium hallii DSM 3353] gi|224954612|gb|EEG35821.1| hypothetical protein EUBHAL_02333 [Eubacterium hallii DSM 3353] Length = 236 Score = 150 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 46/231 (19%), Positives = 87/231 (37%), Gaps = 13/231 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +DG + + E +V + ++ G L Sbjct: 7 ILVVDDDKEIADLVEIYLVNDGYQVLKASDGEQCLQTLK-EHPEVRMLILDIMMPGIDGL 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH----------HREILAR 111 E+ R IR S +P++ +S + F +G DD + KP H + Sbjct: 66 EVCREIRKTSNIPILILSAKAEDMDKIVGFGTGADDYLTKPFHPLELLARVKSQMKRYTT 125 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + + S + E + + + G+ L E IL L +NR + + Sbjct: 126 IQLGEEQQPASKDEIEIQDLTINKAAHVVKKNGKEVALTPIEFDILYLLASNRDRVFSTD 185 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 +IF ++ V N V HI +LR+K+ + + + +GY I+ Sbjct: 186 EIFEKVWNEKVYEVN-NTVMVHIRRLREKIEDNSRSPKILKTVWGVGYKIE 235 >gi|330885633|gb|EGH19782.1| sensor histidine kinase BaeS [Pseudomonas syringae pv. glycinea str. race 4] Length = 690 Score = 150 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 45/221 (20%), Positives = 83/221 (37%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + G S ++ + + ++ L G + Sbjct: 473 ILIVEDEPKLASLMRDYLIAAGYSTHCLSNGLEVVPAVRAQPPQLILLDIML--PGRDGM 530 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R +R+ S VP++ I+ L D G DD + KP RE + R Sbjct: 531 DICRELRSFSAVPIVMITARVEEIDRLLGLDLGADDYICKPFSPRE-MVARVKAILRRTS 589 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 S + ++V G L E R+L + G+ ++ + +Y Sbjct: 590 STDPHTPKVLQVDEAHYQASFNGVSLDLTPVELRLLATFARSPGRVFSRDHLLDRLYSDH 649 Query: 182 DEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221 V + V+SHI LR+KL G DP+ S +GY ++ Sbjct: 650 -RVVTDRTVDSHIRNLRRKLEQACPGQDPIQSLYGVGYKLE 689 >gi|299821102|ref|ZP_07052990.1| response regulator [Listeria grayi DSM 20601] gi|299816767|gb|EFI84003.1| response regulator [Listeria grayi DSM 20601] Length = 237 Score = 150 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 47/229 (20%), Positives = 97/229 (42%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + + L + D+ ++ L G + Sbjct: 6 ILVVDDEKPIADIVKFNLNKEGFDVYCAYDGDEALQLVEEVQPDLILLDIML--PGRDGV 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R +P+I ++ S + + G DD V KP +RE++ARV A RR Sbjct: 64 EVCREVRKKYDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELIARVKANLRRHSQ 123 Query: 122 SNNRAETGPIR---------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 +++A + D +G+ L RE +L YL + G+ + + Sbjct: 124 VSSQAAEDQENSELEVGSLTIHPDAYVVSKRGDTIELTHREFELLHYLAKHIGQVMTREH 183 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + ++G +D + V+ + +LR+K+ + + ++R +GY + Sbjct: 184 LLQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPAWLVTRRGVGYYL 231 >gi|229087092|ref|ZP_04219243.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus Rock3-44] gi|228696236|gb|EEL49070.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus Rock3-44] Length = 230 Score = 150 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 42/228 (18%), Positives = 89/228 (39%), Gaps = 10/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D +++ +G + + E D+ ++ L Sbjct: 5 ILLVEDDISIQEMVETYLSKEGFQITIASDGEEGVLAFLKGSFDLIILDIM--MPKLDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115 E+ RIIR S VP++ +S + G DD + KP E+ R + Sbjct: 63 EVVRIIREKSAVPILMMSAKDTDVDKAIGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 Y + R G +++ + L +E IL+ + N+ + K QI++ Sbjct: 123 YSATEQKEERIAIGDLKIDPINFTVHKNEKQLKLTLKEFEILKLFVKNQNRVFTKAQIYN 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 I+ + ++NV+ H+ +LR+K+ + + + +GY ++ Sbjct: 183 LIWSE-EYYGDDNVINVHMRRLREKIEDDPSSPKYIKTLWGIGYKLEV 229 >gi|225023059|ref|ZP_03712251.1| hypothetical protein CORMATOL_03107 [Corynebacterium matruchotii ATCC 33806] gi|305682004|ref|ZP_07404808.1| response regulator MprA [Corynebacterium matruchotii ATCC 14266] gi|224944282|gb|EEG25491.1| hypothetical protein CORMATOL_03107 [Corynebacterium matruchotii ATCC 33806] gi|305658477|gb|EFM47980.1| response regulator MprA [Corynebacterium matruchotii ATCC 14266] Length = 230 Score = 150 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 48/226 (21%), Positives = 92/226 (40%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 V++DD V+D +G + E + + D+ ++ L Sbjct: 3 IVVVDDEQAVRDSLRRSLSFNGYDIAIAEDGEQALDVIEKEQPDLVILDVM--MPKMDGL 60 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA------ 114 E+ R +R+H P++ ++ + + D+G DD + KP E+LARV + Sbjct: 61 EVCRHLRSHGDDRPILVLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLLRRAA 120 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 S +++ D RD L R E +L+ LM N + ++++ I Sbjct: 121 AEASGPSSQAEITFEDLKLNPDTRDVVRGNRTISLTRTEFALLQLLMTNPRRVLSRSTIL 180 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G +D N +E +I LR+K + + + R +GY + Sbjct: 181 EEVWG-YDFPTSGNALEVYIGYLRRKTEQEGEPRLIHTVRGVGYVL 225 >gi|308397855|ref|ZP_07492623.2| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu012] gi|308366785|gb|EFP55636.1| mycobacterial persistence regulator mprA [Mycobacterium tuberculosis SUMu012] Length = 228 Score = 150 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 50/224 (22%), Positives = 96/224 (42%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V++ +G S+E + + +S R D ++ L Sbjct: 3 ILVVDDDRAVRESLRRSLSFNGYSVELAHDGVEALDMIASDRPDALVLDVM--MPRLDGL 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +R P++ ++ S+ + D+G DD + KP E+LAR+ A+ RR K Sbjct: 61 EVCRQLRGTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTK 120 Query: 121 VSN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + + R+ L R E +LE L+AN + + +++I Sbjct: 121 PEDAAESMAMRFSDLTLDPVTREVNRGQRRISLTRTEFALLEMLIANPRRVLTRSRILEE 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G FD N +E ++ LR+K + + R +GY + Sbjct: 181 VWG-FDFPTSGNALEVYVGYLRRKTEADGEPRLIHTVRGVGYVL 223 >gi|284991262|ref|YP_003409816.1| winged helix family two component transcriptional regulator [Geodermatophilus obscurus DSM 43160] gi|284064507|gb|ADB75445.1| two component transcriptional regulator, winged helix family [Geodermatophilus obscurus DSM 43160] Length = 238 Score = 150 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 50/232 (21%), Positives = 88/232 (37%), Gaps = 15/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++ D+G + S E D+ ++ L Sbjct: 8 LLVVEDDDPIRTALRWALEDEGYDVGEAASGEEALAAVGVTPPDLMVVDLMLG--SMDGF 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R +R +P+I +S + ++G DD V KP +EI AR+ A+ RR Sbjct: 66 TVIREVRREHDLPIIVVSARADTDDIVAALEAGADDYVTKPFQVKEITARLRALRRRATS 125 Query: 122 SNNRAETGPIRVFSDGR-----------DPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 P V D GE PL E R+L L + G+ ++ Sbjct: 126 GTPANHPVPEEVVLDSTLPALVLREAAGTVHRGGEQVPLTLTEFRLLCELASAPGRVFSR 185 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 + ++ +E +V+ HI +LR K+ + V + R LGY +D Sbjct: 186 QVLLERVW-EHGFFGDERIVDVHIRRLRTKVERDPGAPRVVVTVRGLGYRLD 236 >gi|258513815|ref|YP_003190037.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] gi|257777520|gb|ACV61414.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] Length = 235 Score = 150 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 45/230 (19%), Positives = 86/230 (37%), Gaps = 11/230 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD + D ++ + F + + + R D++ ++ L Sbjct: 8 ILIADDEQAIADLVAVYLENENYHVFKFYNGKDTLNCVENERLDLAILDVML--PDMDGF 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + IR P+I ++ + G DD + KP E++ARV A RR Sbjct: 66 SICQQIREKHNFPVIMLTAKEEEIDKITGLTLGADDYITKPFRPLELIARVKAQLRRFTK 125 Query: 122 SNNRAETGPIRV--------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 N+ + + + + L E IL L +NRG+ V+ ++ Sbjct: 126 YNSAEPNQEEHLIAFSGLVLDKKTHECTLNEKRLSLTPTEFSILWVLCSNRGRVVSSEEL 185 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDW 222 F ++G N V HI LR+K+ + + + +GY I+ Sbjct: 186 FHEVWGDKYFTNSNNTVMVHIRHLREKMHDSAEHPKYIKTVWGVGYKIEK 235 >gi|170758276|ref|YP_001787361.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] gi|169405265|gb|ACA53676.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] Length = 221 Score = 150 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 46/224 (20%), Positives = 95/224 (42%), Gaps = 10/224 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + + G +E + D+ ++ L Sbjct: 5 ILVVEDDFDIHTIISEVLKESGYLVEVATDGLIAVEMFRRGEFDLIILDVML--PKIDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 + IIR S +P+I ++ + + F+ VDD + KP ++ RV Sbjct: 63 VVCEIIRKESSMPIIMLTALGEEEDEMKGFELKVDDYIIKPFSINLLIKRVEAVLRRANG 122 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 L+ +N+ I ++ V + L +E +ILE L++N G+ ++ + + I+ Sbjct: 123 LEENNSTLTFEEITIYPSNYKTLVNNKEIELTYKEFQILEILISNVGRVFSRESLLNQIW 182 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 G +D + V+++HI LR+KL D + + R +GY I+ Sbjct: 183 G-YDYFGDTRVIDTHIKNLRQKL----NIDYIKTIRGVGYKIEK 221 >gi|328954650|ref|YP_004371983.1| two component transcriptional regulator, winged helix family [Coriobacterium glomerans PW2] gi|328454974|gb|AEB06168.1| two component transcriptional regulator, winged helix family [Coriobacterium glomerans PW2] Length = 242 Score = 150 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 42/225 (18%), Positives = 87/225 (38%), Gaps = 8/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D ++D A +G + G + + D+ ++ L Sbjct: 8 ILLVEDEKAIRDAVAAYLEREGYWVVGVGDGQSAVEEFEKHQFDLIVLDLML--PKLSGE 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117 + R IR S VP+I ++ ++ + + G DD + KP R + A + Sbjct: 66 RVCRAIRDTSDVPIIMLTAKGEVEDRIIGLELGADDYIIKPFSPRELVARVRALFRRTHL 125 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + G + + G V+G L E ++L L + G+ + ++ + Sbjct: 126 ADEPQVEVLDFGDLVIDISGHKILVEGNEVDLTASEFKLLTTLARHPGRVYNRMELVEKV 185 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 G +D E ++SH+ LR KL + + + +GY + Sbjct: 186 LG-YDFEGYERTIDSHVKNLRAKLGDDPKKPKWLYTVHGVGYRFE 229 >gi|229013739|ref|ZP_04170867.1| Uncharacterized sensory transduction protein ycbL [Bacillus mycoides DSM 2048] gi|229135371|ref|ZP_04264160.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus BDRD-ST196] gi|228648067|gb|EEL04113.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus BDRD-ST196] gi|228747408|gb|EEL97283.1| Uncharacterized sensory transduction protein ycbL [Bacillus mycoides DSM 2048] Length = 239 Score = 150 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 42/228 (18%), Positives = 93/228 (40%), Gaps = 10/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D +++ +G + + E D+ ++ L Sbjct: 14 ILLVEDDISIQEMVETYLVKEGFQVTIASDGEEGVNAFLKGSFDLIILDIM--MPKLDGL 71 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115 E+ RIIR S VP++ +S + G DD + KP E+ R + Sbjct: 72 EVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 131 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 Y ++ + + G + + E +G L +E IL+ + N+ + K QI++ Sbjct: 132 YSAVESKDEAIQIGDLIIDPINFTVEKKGRQLKLTLKEFEILKLFVKNQNRVFTKAQIYT 191 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 ++ + ++NV+ H+ +LR+K+ + + + + +GY ++ Sbjct: 192 LVWNE-EYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLEV 238 >gi|227529845|ref|ZP_03959894.1| DNA-binding response regulator [Lactobacillus vaginalis ATCC 49540] gi|227350329|gb|EEJ40620.1| DNA-binding response regulator [Lactobacillus vaginalis ATCC 49540] Length = 241 Score = 150 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 48/228 (21%), Positives = 97/228 (42%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + E + D+ ++ L L Sbjct: 11 ILVVDDEKPISDIIKFNLEKEGYEVVVAFDGEEALEKVEGEKPDLIILDLML--PKIDGL 68 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 E+ + +RA P+I ++ S + + G DD V KP +RE++ARV A RR Sbjct: 69 EVAKRVRAKHTTPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQAA 128 Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + +N + G + + + +GE L RE +L YL + G+ + + + Sbjct: 129 VKAPAEEDNNTDIQVGDLVIHPEAYTVSKRGENINLTHREFELLHYLAEHIGQVINREHL 188 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++G +D + V+ + +LR+K+ + + ++R +GY + Sbjct: 189 LQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPQWLITRRGVGYYL 235 >gi|160940480|ref|ZP_02087825.1| hypothetical protein CLOBOL_05370 [Clostridium bolteae ATCC BAA-613] gi|158437060|gb|EDP14827.1| hypothetical protein CLOBOL_05370 [Clostridium bolteae ATCC BAA-613] Length = 226 Score = 150 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 48/222 (21%), Positives = 103/222 (46%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++ + G ++ E + + + D++ + ++ Sbjct: 6 ILVVDDEARMRKLVKDFLTNKGFAVIEAGDGEEAVDVFFAQK-DIALVLLDVMMPKMDGW 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120 E+ R IR +SQVP+I ++ + L F GVD+ ++KP + ++ARV AI R Sbjct: 65 EVLRTIRKYSQVPVIMLTARSEERDELQGFSLGVDEYISKPFSPKILVARVEAILRRTNV 124 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 S + G I + + G+ L +E +L Y + N+G +++ +I + ++ Sbjct: 125 ASTDSVNVGGICIDKAAHQVTIDGQEIDLSFKEFELLTYFVENQGIALSREKILNNVW-N 183 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D + +++H+ KLR K+ K + + + +GY + Sbjct: 184 YDYFGDARTIDTHVKKLRSKMGEKG--EYIKTIWGMGYKFEV 223 >gi|23099620|ref|NP_693086.1| two-component response regulator [Oceanobacillus iheyensis HTE831] gi|22777850|dbj|BAC14121.1| two-component response regulator involved in phosphate regulation [Oceanobacillus iheyensis HTE831] Length = 231 Score = 150 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 46/227 (20%), Positives = 102/227 (44%), Gaps = 9/227 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + G + + + ++ D+ ++ L + Sbjct: 5 ILIVDDEKSIVTLLKYNMENSGFETDVAYNGQEAINKAEASMYDLIVLDLML--PEVDGM 62 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +R + P++ ++ + + G DD + KP +E++ARV AI RR + Sbjct: 63 EVCRTLRMNQVNTPILMLTAKDEEFDKVLGLEMGADDYLTKPFSPKEVIARVKAILRRSQ 122 Query: 121 VSNNRAETGPIR----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 +SNN ++ + + E+ + R+E +L +L ++GK +++ Q+ S+ Sbjct: 123 LSNNHGFHVLKIGELSIYPERYEAEMSNNIITFTRKEFELLYHLAKHKGKVISRDQLLSS 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 ++ +D + +V+ HIS LR K+ + + R LGY ++ Sbjct: 183 VWD-YDFIGDTRIVDVHISHLRDKIEPNSKKPVYIKTVRGLGYKMEE 228 >gi|296133811|ref|YP_003641058.1| two component transcriptional regulator, winged helix family [Thermincola sp. JR] gi|296032389|gb|ADG83157.1| two component transcriptional regulator, winged helix family [Thermincola potens JR] Length = 235 Score = 150 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 48/231 (20%), Positives = 90/231 (38%), Gaps = 15/231 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + +G ++ + R D+ ++ L G L Sbjct: 4 ILIVDDEHHIIELVRFVLQKEGFDVKVAQDGLTAIKETENYRPDLILLDLML--PGIDGL 61 Query: 62 ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR--------EILA 110 E+ R +R +P+I ++ + + G DD V KP R + Sbjct: 62 EVCRTLRKKPETADIPVIMVTAKSDEMDKIIGLELGADDYVTKPFSPRELVARVKARLRR 121 Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 R I + GP+ V + + GE L +E +L L+ N GK ++ Sbjct: 122 RTGLIKHADRKVEEEIAYGPLVVRPARYEVFLNGEKLDLTLKEYELLVLLINNPGKVFSR 181 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + S I+G FD + V+ HI LR+K+ + +++ R +GY Sbjct: 182 DFLLSTIWG-FDYTSDTRTVDVHIYHLRQKIERDPSQPGFIETVRGVGYRF 231 >gi|283458744|ref|YP_003363383.1| response regulator [Rothia mucilaginosa DY-18] gi|283134798|dbj|BAI65563.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Rothia mucilaginosa DY-18] Length = 228 Score = 150 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 53/226 (23%), Positives = 98/226 (43%), Gaps = 9/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + D L G +G ++ + D+ ++ L G + Sbjct: 5 ILIVEDEEALSDPLAFLLGREGFQTIVVDNGLDALPVFDREGADLVLLDVML--PGMSGM 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116 E+ R +R S VP+I ++ S + + G DD V KP RE++AR Sbjct: 63 EVCRKLREVSSVPIIMLTAKDSELDKVLGLELGADDYVTKPYSARELIARIRAVLRRRSA 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + + GP+R+ D V GE +P +E +LE L+ N G+ + + Q+ Sbjct: 123 ETDSATESVLQGGPVRMDIDRHVVTVNGEEISMPLKEFELLEILLRNVGRVMTRGQLIER 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 ++G D + ++ HI +LR K+ + V + R LGY + Sbjct: 183 VWGA-DYVGDTKTLDVHIKRLRSKIEPDSSAPQYVVTVRGLGYKFE 227 >gi|148980999|ref|ZP_01816248.1| DNA-binding response regulator PhoB [Vibrionales bacterium SWAT-3] gi|145961039|gb|EDK26361.1| DNA-binding response regulator PhoB [Vibrionales bacterium SWAT-3] Length = 229 Score = 150 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 36/222 (16%), Positives = 89/222 (40%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D A +++ + G + D+ ++ L G G Sbjct: 5 ILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDTAVNKLCEPFPDLVLLDWMLPGGSGVNF 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ + +P++ ++ + + + G DD + KP +E++AR+ A+ RR+ Sbjct: 65 IKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIRRVT 124 Query: 121 VSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + ++ + E ++L + M ++ + ++ Q+ + ++ Sbjct: 125 PTALEDVIDVQGLKLDPVSHRVTASEGPVDMGPTEFKMLHFFMTHQERVYSREQLLNNVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G + VE+ V+ HI +LRK L + + + R GY Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALESAGHDKLIQTVRGAGYRF 225 >gi|89096800|ref|ZP_01169692.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911] gi|89088815|gb|EAR67924.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911] Length = 236 Score = 150 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 47/229 (20%), Positives = 96/229 (41%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + + D+ ++ L + + Sbjct: 5 ILVVDDEKPIADILQFNLKKEGYEVHCAYDGNEALEKVEEVKPDLILLDIMLPQR--DGM 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R ++P+I ++ S + + G DD V KP +RE++ARV A RR + Sbjct: 63 EVCREVRKKYEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSNRELIARVKANLRRHQQ 122 Query: 122 ---------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 N G + + D +GE L RE +L YL + G+ + + Sbjct: 123 IAAKAGEEEETNEIAIGSLVIHPDAYVVSKRGETIELTHREFELLHYLAKHIGQVMTREH 182 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + ++G +D + V+ + +LR+K+ + + ++R +GY + Sbjct: 183 LLQTVWG-YDYYGDVRTVDVTVRRLREKIEDNPSHPTWIVTRRGVGYYL 230 >gi|149927072|ref|ZP_01915330.1| phosphate regulon transcriptional regulatory protein [Limnobacter sp. MED105] gi|149824293|gb|EDM83513.1| phosphate regulon transcriptional regulatory protein [Limnobacter sp. MED105] Length = 235 Score = 150 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 41/222 (18%), Positives = 92/222 (41%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKV 60 ++++D + + G + + + L ++ D+ ++ L GK G + Sbjct: 5 ILVVEDEPAIAELIAVNLSFAGHKVLRAADADQAKTLITAELPDLVLLDWMLPGKTGIQF 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118 R VP+I ++ Q +D ++G DD + KP +E+ + R Sbjct: 65 AHELRGHERTRHVPVIMLTARTEEQDKVDGLEAGADDYITKPFSPKELLARIKAVLRRRA 124 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 +++++ E +++ ++ + E R+L + M + + ++TQ+ ++ Sbjct: 125 PQLTDDIVEVHGLKLDPVTHRIMGHDKIIDMGPTEFRLLHFFMTHPERVHSRTQLLDQVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G VEE V+ HI +LR+ L +++ R GY Sbjct: 185 GDH-VFVEERTVDVHIRRLRQALTISGHDRLIETVRGAGYRF 225 >gi|172058697|ref|YP_001815157.1| two component transcriptional regulator [Exiguobacterium sibiricum 255-15] gi|171991218|gb|ACB62140.1| two component transcriptional regulator, winged helix family [Exiguobacterium sibiricum 255-15] Length = 222 Score = 150 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 41/222 (18%), Positives = 95/222 (42%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++ DG + + + ++ + G Sbjct: 3 ILVVEDDLHIQRLIRETLEADGHRVTATADGNEAAAWIDGHLFEAAVLDVMV--PGRTGF 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL ++R++ ++P++ ++ L D F +G DD + KP E++ R+ A+ RR + Sbjct: 61 ELCALLRSNQEIPILMLTALGELTDKRDGFSAGADDYITKPFDPEELVFRLHAVARRYQK 120 Query: 122 SNNRAETG-PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + + + + +PRRE +L L + G+ ++ ++ ++GL Sbjct: 121 AAVPTMQFGEVTIDKRSQQLTIGTTRLTIPRREFELLHQLASFPGRVFSREELIEHVWGL 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 D ++ V+ HI +LR +L +++ R LGY ++ Sbjct: 181 -DFMGDDRTVDVHIKRLRTRLHQ-TEAITIETVRGLGYRLEV 220 >gi|16802333|ref|NP_463818.1| hypothetical protein lmo0287 [Listeria monocytogenes EGD-e] gi|47096376|ref|ZP_00233971.1| DNA-binding response regulator [Listeria monocytogenes str. 1/2a F6854] gi|224498864|ref|ZP_03667213.1| hypothetical protein LmonF1_03833 [Listeria monocytogenes Finland 1988] gi|224502419|ref|ZP_03670726.1| hypothetical protein LmonFR_07849 [Listeria monocytogenes FSL R2-561] gi|254828747|ref|ZP_05233434.1| DNA-binding response regulator [Listeria monocytogenes FSL N3-165] gi|254900524|ref|ZP_05260448.1| hypothetical protein LmonJ_11939 [Listeria monocytogenes J0161] gi|254913525|ref|ZP_05263537.1| DNA-binding response regulator [Listeria monocytogenes J2818] gi|254937894|ref|ZP_05269591.1| DNA-binding response regulator [Listeria monocytogenes F6900] gi|255026056|ref|ZP_05298042.1| hypothetical protein LmonocytFSL_06315 [Listeria monocytogenes FSL J2-003] gi|255029993|ref|ZP_05301944.1| hypothetical protein LmonL_14634 [Listeria monocytogenes LO28] gi|284800586|ref|YP_003412451.1| hypothetical protein LM5578_0333 [Listeria monocytogenes 08-5578] gi|284993772|ref|YP_003415540.1| hypothetical protein LM5923_0332 [Listeria monocytogenes 08-5923] gi|16409652|emb|CAD00814.1| lmo0287 [Listeria monocytogenes EGD-e] gi|47015250|gb|EAL06188.1| DNA-binding response regulator [Listeria monocytogenes str. 1/2a F6854] gi|258601154|gb|EEW14479.1| DNA-binding response regulator [Listeria monocytogenes FSL N3-165] gi|258610502|gb|EEW23110.1| DNA-binding response regulator [Listeria monocytogenes F6900] gi|284056148|gb|ADB67089.1| hypothetical protein LM5578_0333 [Listeria monocytogenes 08-5578] gi|284059239|gb|ADB70178.1| hypothetical protein LM5923_0332 [Listeria monocytogenes 08-5923] gi|293591535|gb|EFF99869.1| DNA-binding response regulator [Listeria monocytogenes J2818] Length = 237 Score = 150 bits (378), Expect = 1e-34, Method: Composition-based stats. Identities = 44/229 (19%), Positives = 92/229 (40%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + + L + D+ ++ L G + Sbjct: 6 ILVVDDEKPIADIVKFNLNKEGFDVYCAYDGDEALELVEEVQPDLILLDIML--PGRDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112 E+ R +R +P+I ++ S + + G DD V KP +RE Sbjct: 64 EVCREVRKKYDMPIIMVTAKDSEIDKVIGLELGADDYVTKPFSNRELIARVKANLRRHSQ 123 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + N+ E G + + D +GE L RE +L YL + G+ + + Sbjct: 124 VSSSTAEEEENSELEIGSLIIHPDAYVASKRGETIELTHREFELLHYLAKHMGQVMTREH 183 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + ++G +D + V+ + +LR+K+ + + ++R +GY + Sbjct: 184 LLQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPAWLVTRRGVGYYL 231 >gi|282866555|ref|ZP_06275598.1| two component transcriptional regulator, winged helix family [Streptomyces sp. ACTE] gi|282558602|gb|EFB64161.1| two component transcriptional regulator, winged helix family [Streptomyces sp. ACTE] Length = 239 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 40/225 (17%), Positives = 86/225 (38%), Gaps = 11/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D ++ + G + R D+ ++ L Sbjct: 11 LVVEDDPSIRTLLTSALHAAGYRVAPAADGREALAETDRCRPDLIVLDVML--PDTDGFA 68 Query: 63 LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115 + R +RA P++ ++ ++ + SG DD V KP H +EI + R Sbjct: 69 VTRELRARGVYTPVLFLTARTEVEDRIIGLSSGGDDYVTKPFHIQEILLRVRAILRRTGG 128 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + V + G L E R+L L+++ K + K +I Sbjct: 129 PAPVPAERPPLRYADLGVDRERHTVHRGGRPVRLSPTEFRLLVCLVSHPEKVLEKREILQ 188 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ + A + +V+++I LR+K+ + G + + R +GY + Sbjct: 189 EVW-QYGFAGDTRIVDTYIKNLRRKIDQE-GPPLIHTVRGVGYCL 231 >gi|269796463|ref|YP_003315918.1| CheY-like receiver domain/winged-helix DNA-binding domain-containing response regulator [Sanguibacter keddieii DSM 10542] gi|269098648|gb|ACZ23084.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Sanguibacter keddieii DSM 10542] Length = 231 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 51/228 (22%), Positives = 99/228 (43%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++ +G + D+ ++ L G Sbjct: 4 ILVVEDEESYREPLTYQLTREGYDVVAVADGAAGLAAYDEGGADLVLLDLML--PGLSGT 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R VP+I ++ + + G DD V KP RE+LARV A+ RR + Sbjct: 62 EVCRELRQRGDVPVIMLTAKDGEIDKVVGLELGADDYVTKPYSFRELLARVRAVLRRRQP 121 Query: 122 SNNRAETG--------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + E P+++ D V+GE+ LP +E +LE+L+ N G+ + + Q+ Sbjct: 122 AAAVDEDEADELVGSGPVQMDVDRHVVTVRGELVSLPLKEFDLLEFLLRNAGRVLTRGQL 181 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++G D + ++ H+ +LR K+ + + + + R LGY + Sbjct: 182 IDRVWG-SDYVGDTKTLDVHVKRLRAKIETDPASPELLLTVRGLGYKL 228 >gi|240169348|ref|ZP_04748007.1| mycobacterial persistence regulator [Mycobacterium kansasii ATCC 12478] Length = 228 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 50/224 (22%), Positives = 97/224 (43%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V++ +G S+E + + +S R D ++ L Sbjct: 3 ILVVDDDRAVRESLRRSLSFNGYSVELAHDGLEALDMIASDRPDALVLDVM--MPRLDGL 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +R+ P++ ++ S+ + D+G DD + KP E+LAR+ A+ RR K Sbjct: 61 EVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTK 120 Query: 121 VSNN----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + + R+ L R E +LE L+AN + + +++I Sbjct: 121 PDDTAESVAMRFSDLSLDPVTREVTRGQRRISLTRTEFALLEMLIANPRRVLTRSRILEE 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G FD N +E ++ LR+K + + R +GY + Sbjct: 181 VWG-FDFPTSGNALEVYVGYLRRKTEADGEPRLIHTVRGVGYVL 223 >gi|239930478|ref|ZP_04687431.1| response regulator [Streptomyces ghanaensis ATCC 14672] gi|291438839|ref|ZP_06578229.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291341734|gb|EFE68690.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 223 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 49/224 (21%), Positives = 91/224 (40%), Gaps = 8/224 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D D + +G + + D+ ++ L G E Sbjct: 2 LVVEDEESFSDALSYMLRKEGFEVAVATTGPDGLDEFERNGADLVLLDLML--PGLPGTE 59 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYRR 118 + R +R S VP+I ++ S + + G DD V KP R I A + Sbjct: 60 VCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGEP 119 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + E GP+R+ D V G LP +E +LE L+ N G+ + + Q+ ++ Sbjct: 120 EEAAPAALEAGPVRMDVDRHVVTVGGTKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRVW 179 Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 G D + ++ H+ +LR K+ + + + R LGY + Sbjct: 180 GA-DYVGDTKTLDVHVKRLRAKIEPDPGAPRYLVTVRGLGYKFE 222 >gi|56696826|ref|YP_167188.1| phosphate regulon transcriptional regulatory protein PhoB [Ruegeria pomeroyi DSS-3] gi|56678563|gb|AAV95229.1| phosphate regulon transcriptional regulatory protein PhoB [Ruegeria pomeroyi DSS-3] Length = 229 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 50/221 (22%), Positives = 93/221 (42%), Gaps = 4/221 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61 ++++D ++ +G + + E L D+ ++ + G +V Sbjct: 9 LVVEDEMAQREVLAYNLEAEGFRVIRAENGEEAMLLVDEDTPDIIVLDWMMPNLSGIEVC 68 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + +P+I +S + ++G DD V KP E++ARV + RR++ Sbjct: 69 RRLKTRPETRSIPVIMLSARSEEVDKVRGLETGADDYVVKPYSVVELMARVRSQLRRVRP 128 Query: 122 SNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S R E I + ++ + L E R+L M G+ ++ Q+ ++G Sbjct: 129 STVGLRLEYEDIVLDAETHKVSRSEKPLKLGPTEFRLLSTFMEKPGRVWSREQLLDRVWG 188 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D V+ V+ HI +LRK L G DPV + R GY++ Sbjct: 189 R-DIYVDTRTVDVHIGRLRKALTQHGGDDPVRTVRGAGYAL 228 >gi|119774211|ref|YP_926951.1| response regulator receiver protein [Shewanella amazonensis SB2B] gi|119766711|gb|ABL99281.1| two component transcriptional regulator, winged helix family [Shewanella amazonensis SB2B] Length = 229 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 32/224 (14%), Positives = 81/224 (36%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D +++ + G + + D+ ++ G + Sbjct: 5 ILIVEDELAIREMLTFVMEQHGFTTSVAEDFDSALGQLQEPYPDLILLDWM--FPGGSGI 62 Query: 62 ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIY 116 +L + ++ Q+P+I ++ + + + G DD + KP +E+ + Sbjct: 63 QLAKRLKQDEFTRQIPVIMLTARGEEEDKVKGLEVGADDYITKPFSPKELVARIKAVLRR 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + + V + E R+L + M + + ++ Q+ Sbjct: 123 AAPTRLEETIDVQGLTLDPVSHRVTAGDTVLDMGPTEFRLLHFFMTHPERVYSREQLLDN 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + VE+ V+ HI +LRK + + + R GY Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKAVEPSGHDRLIQTVRGAGYRF 225 >gi|332074558|gb|EGI85032.1| response regulator [Streptococcus pneumoniae GA17545] Length = 234 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 43/233 (18%), Positives = 94/233 (40%), Gaps = 14/233 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + + + + D+ ++ L L Sbjct: 4 ILIVDDEKPISDIIKFNMTKEGYEVVTAFNSREALEQFEAEQPDIIILDLML--PEIDGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL----------AR 111 E+ + IR S VP++ +S S + + G DD V KP +RE+ Sbjct: 62 EVAKTIRKTSSVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRSQP 121 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + + + G + + D + GE L RE +L +L ++ G+ + + Sbjct: 122 MPVDGQEADSKPQPIQIGDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHTGQVITRE 181 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223 + ++G +D + V+ + +LR+K+ + + + ++R +GY + N Sbjct: 182 HLLETVWG-YDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYMRNN 233 >gi|328886560|emb|CCA59799.1| putative response regulator [Streptomyces venezuelae ATCC 10712] Length = 269 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 44/231 (19%), Positives = 88/231 (38%), Gaps = 15/231 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D V + G ++E + D+ ++ L G L Sbjct: 13 ILVVEDDPTVAEVVTGYLERAGCAVEHAADGPEALRRAAERWADLIVLDLML--PGLDGL 70 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +RA VP+I ++ + + + G DD V KP RE++ RV ++ RR + Sbjct: 71 EVCRRLRATGPVPVIMLTARGDQEDRITGLEVGADDYVTKPFSPRELVLRVESVLRRTRT 130 Query: 122 SNNRAETGPIRV----------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + RA + R G L RE +L Y + + ++ Sbjct: 131 TAARATPAVAPRPVLRAGDLTVDTATRRATRAGAELGLTLREFDLLAYFLEHPRTAHSRE 190 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221 + ++G + + V H+ +LR K+ +++ +GY + Sbjct: 191 ALMRRVWGWD--FGDLSTVTVHVRRLRAKIEQDPARPRLIETVWGVGYRFE 239 >gi|319779028|ref|YP_004129941.1| Phosphate regulon transcriptional regulatory protein PhoB (SphR) [Taylorella equigenitalis MCE9] gi|317109052|gb|ADU91798.1| Phosphate regulon transcriptional regulatory protein PhoB (SphR) [Taylorella equigenitalis MCE9] Length = 233 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 36/222 (16%), Positives = 86/222 (38%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D +++ G + + + L + D+ ++ L G + Sbjct: 5 ILVVEDEPAIQELISVNLTFAGHKVLRALDAQQAKILIDAELPDLILLDWMLPTTSGLSL 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118 R +P+I ++ S ++ ++G DD + KP +E+ + R Sbjct: 65 ARSLRSDERTQDIPIIMLTAKNSEHDKVEGLENGADDYITKPFSPKELLARIKAVLRRRA 124 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 +++++ + + + L E R+L + M + + ++ Q+ ++ Sbjct: 125 PQLTDDEISIAGLHLDPGSHRVTGNNTLLSLGPTEFRMLHFFMTHAERVFSRGQLLDHVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G +EE V+ HI +LRK L +++ R GY Sbjct: 185 GDH-VFLEERTVDVHIRRLRKALEPSGHDQLIETVRGSGYRF 225 >gi|257057097|ref|YP_003134929.1| response regulator with CheY-like receiver domain-containing protein and winged-helix DNA-binding domain-containing protein [Saccharomonospora viridis DSM 43017] gi|256586969|gb|ACU98102.1| response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein [Saccharomonospora viridis DSM 43017] Length = 221 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 49/223 (21%), Positives = 95/223 (42%), Gaps = 9/223 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ +D + +G ++ + + D+ ++ L G Sbjct: 4 ILVAEDEPRIAAFVNKGLTANGFTVTVVEDGQAAYEYALTGSFDLMVLDIGL--PGMDGF 61 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-AIYRRL 119 + R +RA P+I ++ S+Q T+ + G DD + KP E+LARV + Sbjct: 62 TVLRKLRAERCPIPVIILTARDSVQDTVAGLEGGADDYMPKPFRFEELLARVRLRLVSDR 121 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 G +++ R V GE L RE + E + + G+ +++ Q+ S ++G Sbjct: 122 SQEPTVLTYGGLQLDLRTRRAHVGGETVDLSAREFALAETFLRHPGQVLSREQLLSQVWG 181 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D NVV+ ++ LR+KL G D + + R +GY ++ Sbjct: 182 -YDFDPGSNVVDVYVRYLRRKL----GADRITTVRGMGYRLEE 219 >gi|319653605|ref|ZP_08007704.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2] gi|317394804|gb|EFV75543.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2] Length = 231 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 50/228 (21%), Positives = 83/228 (36%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD + D +G + + + + + D+ ++ Sbjct: 6 ILIADDEEEIADLIAIHLEKEGYHVIKASDGQEAVRIVETQSIDLLVLDIM--MPKMDGY 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR +P+I +S S + G DD + KP E++ARV A RR Sbjct: 64 EVTRRIREQHNMPIIFLSAKTSDFDKVQGLVIGADDYMTKPFTPIELVARVNAQLRRFMK 123 Query: 122 SNNRAETGPIRVFS-------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N + D R + G+ L +E IL L ++ K IF Sbjct: 124 LNQPKADIKTSLEYGGLVITPDQRTVTLYGKTIDLTPKEFDILYLLASHPKKVFNVENIF 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221 ++G N V HI LRKKL D + + +GY+ + Sbjct: 184 QQVWGEAYFEGG-NTVMVHIRTLRKKLEEDKRKDKWIKTVWGVGYTFN 230 >gi|315304718|ref|ZP_07874912.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Listeria ivanovii FSL F6-596] gi|313626910|gb|EFR95849.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Listeria ivanovii FSL F6-596] Length = 236 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 46/233 (19%), Positives = 95/233 (40%), Gaps = 16/233 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A + G + + L S + D+ ++ L + Sbjct: 4 ILVVDDEASIVTLLQFNIEKAGFEVVTAEDGKAGYELALSEKPDLIVLDLML--PEMDGI 61 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI----- 115 E+ + +R + VP++ ++ + + G DD + KP RE++AR+ AI Sbjct: 62 EVTKKLRQNKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTE 121 Query: 116 ------YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 G +++ + + +Q E+ L +E +L +L +RGK + Sbjct: 122 GKAEAVEENSDEMEAMILIGDLKILPESYEVYLQDELLDLTPKEFELLLFLANHRGKVFS 181 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221 + Q+ ++ +D E +V+ H+S LR KL + + R GY ++ Sbjct: 182 RDQLLDTVW-NYDYVGETRIVDVHVSHLRDKLETDTKQPKYIKTIRGFGYKME 233 >gi|320008929|gb|ADW03779.1| two component transcriptional regulator, winged helix family [Streptomyces flavogriseus ATCC 33331] Length = 228 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 50/222 (22%), Positives = 94/222 (42%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D ++ G + + E L R D+ ++ L G Sbjct: 7 LLLIEDDDAIRTALELSLSRQGHRVATAATGEDGLELLREQRPDLVVLDVML--PGIDGF 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120 E+ R IR Q+P+I ++ + +SG DD V KP+ R + AR+ A+ R + Sbjct: 65 EVCRRIRRTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGER 124 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 S + A G + + GE L E R+L L G+ +++ Q+ ++ Sbjct: 125 ESTDSATFGSVVIDRSAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVW-E 183 Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 D + +V++ + +LR K+ + + + R +GY +D Sbjct: 184 HDYLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRLD 225 >gi|163942268|ref|YP_001647152.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163864465|gb|ABY45524.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] Length = 230 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 41/228 (17%), Positives = 93/228 (40%), Gaps = 10/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D +++ +G + + E D+ ++ L Sbjct: 5 ILLVEDDISIQEMVETYLVKEGFQVTIASDGEEGVNAFLKGSFDLIILDIM--MPKLDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115 E+ RIIR S +P++ +S + G DD + KP E+ R + Sbjct: 63 EVVRIIREKSAIPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 Y ++ + + G + + E +G L +E IL+ + N+ + K QI++ Sbjct: 123 YSAVESKDEAIQIGDLIIDPINFTVEKKGRQLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 ++ + ++NV+ H+ +LR+K+ + + + + +GY ++ Sbjct: 183 LVWNE-EYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLEV 229 >gi|15674628|ref|NP_268802.1| two-component response regulator [Streptococcus pyogenes M1 GAS] gi|19745650|ref|NP_606786.1| two-component response regulator [Streptococcus pyogenes MGAS8232] gi|21909908|ref|NP_664176.1| two-component response regulator [Streptococcus pyogenes MGAS315] gi|28896393|ref|NP_802743.1| two-component response regulator [Streptococcus pyogenes SSI-1] gi|50913815|ref|YP_059787.1| VicR [Streptococcus pyogenes MGAS10394] gi|56808928|ref|ZP_00366636.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Streptococcus pyogenes M49 591] gi|71903089|ref|YP_279892.1| two-component response regulator [Streptococcus pyogenes MGAS6180] gi|71910248|ref|YP_281798.1| two-component response regulator [Streptococcus pyogenes MGAS5005] gi|94988065|ref|YP_596166.1| two-component response regulator [Streptococcus pyogenes MGAS9429] gi|94989945|ref|YP_598045.1| two-component response regulator VicR [Streptococcus pyogenes MGAS10270] gi|94991951|ref|YP_600050.1| two-component response regulator VicR [Streptococcus pyogenes MGAS2096] gi|94993851|ref|YP_601949.1| two-component response regulator VicR [Streptococcus pyogenes MGAS10750] gi|139474240|ref|YP_001128956.1| response regulator protein [Streptococcus pyogenes str. Manfredo] gi|209558999|ref|YP_002285471.1| Two-component response regulator [Streptococcus pyogenes NZ131] gi|306827822|ref|ZP_07461092.1| response regulator [Streptococcus pyogenes ATCC 10782] gi|13621741|gb|AAK33523.1| two-component response regulator [Streptococcus pyogenes M1 GAS] gi|19747781|gb|AAL97285.1| two-component response regulator [Streptococcus pyogenes MGAS8232] gi|21904096|gb|AAM78979.1| two-component response regulator [Streptococcus pyogenes MGAS315] gi|28811644|dbj|BAC64576.1| putative two-component response regulator [Streptococcus pyogenes SSI-1] gi|50902889|gb|AAT86604.1| VicR [Streptococcus pyogenes MGAS10394] gi|71802184|gb|AAX71537.1| two-component response regulator [Streptococcus pyogenes MGAS6180] gi|71853030|gb|AAZ51053.1| two-component response regulator [Streptococcus pyogenes MGAS5005] gi|94541573|gb|ABF31622.1| two-component response regulator [Streptococcus pyogenes MGAS9429] gi|94543453|gb|ABF33501.1| Two-component response regulator VicR [Streptococcus pyogenes MGAS10270] gi|94545459|gb|ABF35506.1| Two-component response regulator VicR [Streptococcus pyogenes MGAS2096] gi|94547359|gb|ABF37405.1| Two-component response regulator VicR [Streptococcus pyogenes MGAS10750] gi|134272487|emb|CAM30750.1| response regulator protein [Streptococcus pyogenes str. Manfredo] gi|209540200|gb|ACI60776.1| Two-component response regulator [Streptococcus pyogenes NZ131] gi|304429992|gb|EFM33031.1| response regulator [Streptococcus pyogenes ATCC 10782] Length = 236 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 49/232 (21%), Positives = 97/232 (41%), Gaps = 16/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + + + D+ ++ L L Sbjct: 4 ILIVDDEKPISDIIKFNLTKEGYDIVTAFDGREAVTIFEEEKPDLIILDLML--PELDGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IR S VP+I +S S + + G DD V KP +RE+LARV A RR + Sbjct: 62 EVAKEIRKTSHVPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTET 121 Query: 122 SN------------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 G +++ D + G+ L RE +L +L + G+ + Sbjct: 122 IETAVAEENASSGTQELTIGNLQILPDAFVAKKHGQEVELTHREFELLHHLANHMGQVMT 181 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + + ++G +D + V+ + +LR+K+ + + + ++R +GY + Sbjct: 182 REHLLEIVWG-YDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYM 232 >gi|291563929|emb|CBL42745.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [butyrate-producing bacterium SS3/4] Length = 234 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 47/232 (20%), Positives = 85/232 (36%), Gaps = 14/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D DG + N+ + + + ++ G L Sbjct: 6 ILVVDDEKEIADLVEIYLVSDGYKVFKANNAKEGLEILDQEEIHLVLLDIM--MPGMDGL 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH----------HREILAR 111 E+ R IR + +P+I +S + + +G DD V KP + + Sbjct: 64 EMCRKIRETNNIPIIMLSAKSTDLDKILGLGTGADDYVVKPFNPLELTARVKSQLRRYTQ 123 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + K + N + + D V GE L E IL L +N G+ + Sbjct: 124 LNPNSSTGKAAKNEISIRGLSINKDNHKVVVYGEEIKLTPIEFDILYLLASNPGRVFSTD 183 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDW 222 +IF ++ N V HI +LR K++ D + + +GY I+ Sbjct: 184 EIFEKVWNEKVYEAN-NTVMVHIRRLRGKMKEDTRQDKIITTVWGVGYKIEK 234 >gi|229062220|ref|ZP_04199542.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus AH603] gi|228717048|gb|EEL68727.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus AH603] Length = 239 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 42/228 (18%), Positives = 93/228 (40%), Gaps = 10/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D +++ +G + + E D+ ++ L Sbjct: 14 ILLVEDDISIQEMVETYLVKEGFQVTIASDGEEGVNAFLKGSFDLIILDIM--MPKLDGL 71 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115 E+ RIIR S VP++ +S + G DD + KP E+ R + Sbjct: 72 EVVRIIREKSAVPILMMSAKDTDVDKAIGLGLGADDYICKPFSMIELAARVKAGIRRSTK 131 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 Y ++ + + G + + E +G L +E IL+ + N+ + K QI++ Sbjct: 132 YSAVESKDEAIQIGDLIIDPINFTVEKKGRQLKLTLKEFEILKLFVKNQNRVFTKAQIYT 191 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 ++ + ++NV+ H+ +LR+K+ + + + + +GY ++ Sbjct: 192 LVWNE-EYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLEV 238 >gi|118619772|ref|YP_908104.1| two component response transcriptional regulatory protein MprA [Mycobacterium ulcerans Agy99] gi|160012527|sp|A0PWB4|MPRA_MYCUA RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial persistence regulator A gi|118571882|gb|ABL06633.1| mycobacterial persistence regulator MprA [Mycobacterium ulcerans Agy99] Length = 232 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 43/226 (19%), Positives = 90/226 (39%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V++ +G ++E + + +S R D ++ L Sbjct: 5 ILVVDDDRAVRESLRRSLSFNGYTVELAHDGVEALEMIASDRPDALVLDVM--MPRLDGL 62 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPI------HHREILARVAA 114 E+ R +R+ P++ ++ S+ + D+G DD + KP L R Sbjct: 63 EVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTK 122 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + + + R+ L R E +LE L+AN + + +++I Sbjct: 123 LEDDEAADSVAMTFSDLSLDPVTREVTRGARRISLTRTEFALLEMLIANPRRVLTRSRIL 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G FD N +E ++ LR+K + + + R +GY + Sbjct: 183 EEVWG-FDFPTSGNALEVYVGYLRRKTEAEGEPRLIHTVRGVGYVL 227 >gi|133757060|ref|YP_001096296.1| hypothetical protein pLEW6932_p27 [Staphylococcus sp. 693-2] gi|110084108|gb|ABG49262.1| hypothetical protein [Staphylococcus sp. 693-2] gi|281336140|gb|ADA62689.1| DNA-binding response regulator [Staphylococcus sp. 693-7] Length = 236 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 43/228 (18%), Positives = 93/228 (40%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD +++ + ++ + E L + ++ ++ + Sbjct: 6 ILIADDEKEIRNLLKKYLERELYKVDVAVNGEEALRLFDKNQYNLLILDLM--MPKVDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R + +P++ ++ + G DD + KP E++ARV ++ RR + Sbjct: 64 EVCRRLRNKTNIPILMLTAKDQEVDKVLGLGIGADDYITKPFSINEVIARVKSLMRRFLI 123 Query: 122 --------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + + + GE PL +E +L++L A+ + KTQ+ Sbjct: 124 LGSDGESLEKTSIKYKDLTIDLKKYIIVIGGEEVPLTAKEFELLKFLAAHNEQVFTKTQL 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 F ++ D ++N V HI KLRKK+ + + + +GY Sbjct: 184 FRNVW-ESDYIEDDNTVMVHIRKLRKKIEVDPSNPQFIQTVWGIGYKF 230 >gi|89098508|ref|ZP_01171391.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911] gi|89086753|gb|EAR65871.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911] Length = 223 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 46/225 (20%), Positives = 89/225 (39%), Gaps = 9/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + ++G + + ++ D+ ++ L Sbjct: 1 MIVDDDQHITELIEVYLKNEGYEVSKAGNGVEALNSFGKSQPDLIILDIM--MPEMDGLS 58 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIYR 117 +R SQVP++ +S + +G DD ++KP + E+ AR A Y Sbjct: 59 FCTQVRKSSQVPILMVSAKVEDMDKIVGLMTGADDYMSKPFNPLELTARVKALLRRANYS 118 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + + + GP+ + +G L E IL L N+G+ + +IF ++ Sbjct: 119 QPEKGDAVLQIGPLAIDKQKHHVLAEGNSIKLTSIEFEILYLLARNQGRVFSSEEIFESV 178 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221 + E V HIS LR+KL G + + +GY I+ Sbjct: 179 WNEPGE-GSNKTVMVHISNLREKLEAALPGEKIIHTVWGVGYKIE 222 >gi|319653853|ref|ZP_08007947.1| DNA-binding response regulator [Bacillus sp. 2_A_57_CT2] gi|317394389|gb|EFV75133.1| DNA-binding response regulator [Bacillus sp. 2_A_57_CT2] Length = 227 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 47/227 (20%), Positives = 85/227 (37%), Gaps = 9/227 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +DG ++ D+ ++ L Sbjct: 4 ILIVDDDRQIADLIEVYLKNDGYIIDKAGDGMEALKKLEQDPPDLIVLDIM--MPKMDGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAIY 116 E + +R ++QVP++ +S + +G DD + KP + R A Y Sbjct: 62 EFCKYVRKNNQVPILMVSAKAEDMDKIMGLMTGADDYMIKPFNPLELAARVKALLRRANY 121 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + +++ G + + +G L RE IL L NRG+ A +IF Sbjct: 122 KTTGKADDVLYIGSVAIDKRSHGVTAEGSEIKLTAREFEILYLLAKNRGRVYASEEIFEK 181 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222 ++ E V HIS +R+KL G + + +GY I+ Sbjct: 182 VWNEPGE-GSNKTVMVHISNIREKLEAALPGESVIQTVWGVGYKIEK 227 >gi|300932570|ref|ZP_07147826.1| two-component system response regulator TcsR5 [Corynebacterium resistens DSM 45100] Length = 231 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 44/227 (19%), Positives = 90/227 (39%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD V++ +G ++ + + +S R D++ ++ L Sbjct: 3 ILVADDDQAVRESLRRSLIFNGYTVVLASDGAEALEIIASERPDLAILDVM--MPRRDGL 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARVA 113 E+ R +R+H P++ ++ ++ + D+G DD + KP R + R Sbjct: 61 EVCRELRSHGDDIPILLLTARDAVSERVAGLDAGADDYLPKPFALEELLARTRSLFRRAT 120 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 S+ + + + R+ L R E +LE L+ N K +++ I Sbjct: 121 RPAINEAQSHEPLRFEDLTLNPETREVRRDERQISLTRTEFALLELLIRNPRKVLSRNNI 180 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G +D N +E +I LRKK + + R +GY + Sbjct: 181 LEEVWG-YDFPTSGNALEVYIGYLRKKTEQDGESRLIHTVRGVGYVL 226 >gi|311068829|ref|YP_003973752.1| two-component response regulator [Bacillus atrophaeus 1942] gi|310869346|gb|ADP32821.1| two-component response regulator [Bacillus atrophaeus 1942] Length = 240 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 36/232 (15%), Positives = 83/232 (35%), Gaps = 14/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++ + +E + + D+ ++ G + Sbjct: 9 ILVVDDEARIRRLLKMYLEREEYEIEEAENGDEAIVKGLETDYDLILLDLM--MPGTDGI 66 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112 E+ R IR P+I ++ + F++G DD + KP RE A Sbjct: 67 EVCRQIREKKATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRASQ 126 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + + + + + D G L +E +L +L K + + Sbjct: 127 TSYFNANTTTKDVLVFSHLSIDHDAHRVTADGTEVSLTPKEYELLYFLAKTPDKVYDREK 186 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN--KLGFDPVDSKRFLGYSIDW 222 + ++ ++ + V++H+ +LR+KL + + +GY + Sbjct: 187 LLKEVW-QYEFFGDLRTVDTHVKRLREKLNKVSPGAAKKIVTVWGVGYKFEV 237 >gi|256544847|ref|ZP_05472219.1| DNA-binding response regulator [Anaerococcus vaginalis ATCC 51170] gi|256399736|gb|EEU13341.1| DNA-binding response regulator [Anaerococcus vaginalis ATCC 51170] Length = 226 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 42/225 (18%), Positives = 90/225 (40%), Gaps = 8/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + + +E + + + + ++ L G Sbjct: 4 ILIVEDELDLANLIKDYLEKELYEVEICTEGDKAIEIFDKFKPSLVILDLML--PGMNGY 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117 E+ + IR S +P++ +S + D G DD + KP R + A++ Sbjct: 62 EICQNIRIKSTIPILILSAKIDEFDKVKGLDLGADDYITKPFRPRELLARVNAQLRRSQV 121 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 K + + IR+++ E G L R E +L +L N + ++ Q++ I Sbjct: 122 FNKENLEIIDLENIRIYTKEYKVEKDGRDLDLSRNEFELLIFLSKNPRQVFSREQLYERI 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 +G FD + N V I++LR+K+ + + + +GY + Sbjct: 182 WG-FDSYGDLNTVTVTINRLRQKIEDNPKNPKYILTVWGVGYKFE 225 >gi|218899692|ref|YP_002448103.1| DNA-binding response regulator [Bacillus cereus G9842] gi|218541203|gb|ACK93597.1| DNA-binding response regulator [Bacillus cereus G9842] Length = 230 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 42/228 (18%), Positives = 92/228 (40%), Gaps = 10/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D +++ +G + + E + D+ ++ L Sbjct: 5 ILLVEDDISIQEMVEKYLLKEGFQVTMASDGEAGVQTFFKSSFDLVILDIM--MPKLDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115 E+ RIIR S VP++ +S + G DD + KP E+ R + Sbjct: 63 EVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 Y + + + G + + E G L +E IL+ + N+ + K QI++ Sbjct: 123 YSATETTEKMIQIGDLTIDPINFTVEKNGNPLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 ++ + ++NV+ H+ +LR+K+ + + + + +GY ++ Sbjct: 183 LVWNE-EYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLEV 229 >gi|320085312|emb|CBY95095.1| Transcriptional regulatory protein resD [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 248 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 47/219 (21%), Positives = 93/219 (42%), Gaps = 3/219 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D + + G ++ L + ++ L G Sbjct: 25 ILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIML--PGLDGW 82 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R +R Q P+I ++ S++ + ++G +D + KP E+LARV A R+ Sbjct: 83 QVLRALRTAHQSPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHVP 142 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 R + + + + G+ L R+E +L L + G+ V +T I S ++G+ Sbjct: 143 VFTRLTINGLDMDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWGI- 201 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + E N V+ I +LR K+ + + + R +GY + Sbjct: 202 NFDSETNTVDVAIRRLRAKVDDPFEKKLIMTVRGMGYRL 240 >gi|317506815|ref|ZP_07964589.1| response regulator receiver domain-containing protein [Segniliparus rugosus ATCC BAA-974] gi|316254889|gb|EFV14185.1| response regulator receiver domain-containing protein [Segniliparus rugosus ATCC BAA-974] Length = 228 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 50/224 (22%), Positives = 91/224 (40%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V+D +G S+ + R D ++ G L Sbjct: 3 ILVVDDDRAVRDSLRRSLSFNGYSVRTAENGIEALSQILEDRPDAMVLDVM--MPGLDGL 60 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +R + +P++ ++ ++ + D+G DD + KP E+LARV A+ RR Sbjct: 61 EVCRRLRGSGDDLPILVLTARDTVSERVAGLDAGADDYLPKPFALEELLARVRALLRRRT 120 Query: 121 VSNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 RD L R E +LE LM N + + +T++ Sbjct: 121 PQLEPGVEALTFQDLSLDPATRDVRRGEREISLTRTEFALLEMLMENPRRVLTRTRLLEE 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G +D N +E +I LR+K + + + R +GY + Sbjct: 181 VWG-YDFPTSGNALEVYIGYLRRKTEAEGENRLIHTVRGVGYVL 223 >gi|332653992|ref|ZP_08419736.1| DNA-binding response regulator ArlR [Ruminococcaceae bacterium D16] gi|332517078|gb|EGJ46683.1| DNA-binding response regulator ArlR [Ruminococcaceae bacterium D16] Length = 224 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 50/220 (22%), Positives = 98/220 (44%), Gaps = 4/220 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + +G + S + D+ ++ L + Sbjct: 5 ILLVEDEEKLARMVEMELRYEGYEVTKAFDGRSGLEQALSGKYDLVLLDIML--PQLSGM 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120 E+ R +R S +P+I ++ S+ + DSG DD + KP E+LAR+ A +R Sbjct: 63 EVLRRLRRESDLPVIMLTARDSVIDKVSGLDSGADDYITKPFAIEELLARIRAALRKRAV 122 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + G + + + V+G+ L ++E +L L+ N+G+ + + + +++G Sbjct: 123 HTGSILTAGELAMDVERHQVSVRGQSVELTKKEFDLLHQLLENKGRVLTREALLDSVWG- 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 FD E N V+ +I LR K+ G + + R +GY I Sbjct: 182 FDFVGETNSVDVYIRFLRSKIDEAFGIKLIHTVRGVGYVI 221 >gi|149922748|ref|ZP_01911173.1| two component transcriptional regulator, winged helix family protein [Plesiocystis pacifica SIR-1] gi|149816368|gb|EDM75869.1| two component transcriptional regulator, winged helix family protein [Plesiocystis pacifica SIR-1] Length = 256 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 47/226 (20%), Positives = 92/226 (40%), Gaps = 12/226 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-EDVSAIEAFLIGKGEKV 60 ++++D + D +G + S + D+ ++ L Sbjct: 5 ILIVEDEQDLLDTLEFNLQREGYATRRAASGRAGLEAAALEPAPDLVLLDLML--PDISG 62 Query: 61 LELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---A 114 E+ R +RA VP++ ++ + F+ G DD V KP RE++ RV Sbjct: 63 TEVCRQLRAAERTRSVPVVMLTARGEEVDRVVGFEVGADDYVTKPFSVRELMLRVRAILR 122 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + +R + G + V G V G L E R+L L++ G+ + + Sbjct: 123 RAGTKAEAPSRLQHGDLEVDVAGHRVWVGGNEIRLTALEFRLLATLLSRAGRVQTRDTLL 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 S ++G+ + V++H+++LRKKL + +++ R +GY Sbjct: 183 SDVWGMH-AGLTTRTVDTHVTRLRKKLGDAGS--YIETLRGVGYRF 225 >gi|49184828|ref|YP_028080.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|165870203|ref|ZP_02214859.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167638281|ref|ZP_02396558.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170705986|ref|ZP_02896448.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|177650778|ref|ZP_02933675.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190566316|ref|ZP_03019234.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|229604715|ref|YP_002866357.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|254684552|ref|ZP_05148412.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254721309|ref|ZP_05183099.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254734855|ref|ZP_05192567.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254741256|ref|ZP_05198944.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254755510|ref|ZP_05207544.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|254760046|ref|ZP_05212070.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|49178755|gb|AAT54131.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|164714091|gb|EDR19612.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167513582|gb|EDR88951.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170128988|gb|EDS97853.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|172083239|gb|EDT68300.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190562451|gb|EDV16418.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|229269123|gb|ACQ50760.1| DNA-binding response regulator [Bacillus anthracis str. A0248] Length = 254 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 36/222 (16%), Positives = 94/222 (42%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ +G + + D+ ++ Sbjct: 34 ILIVDDDPHIRELVSVFLECEGFQTYEAIDGLDALQKINQVKVDMVILDIM--MPNMDGF 91 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ +R + +P++ ++ + F G DD + KP E++ RV A+ +R ++ Sbjct: 92 DVCFELRKYYDIPILILTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 151 Query: 122 SNNRAETGPIR-VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + +++ + + + + LP +E +L L + G+ ++ Q+ ++G Sbjct: 152 TVSQSIQVGTVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG- 210 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D E ++ HI++LR+K + + + + R LGY ++ Sbjct: 211 YDFEGNERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLEV 252 >gi|73748816|ref|YP_308055.1| DNA-binding response regulator [Dehalococcoides sp. CBDB1] gi|73660532|emb|CAI83139.1| DNA-binding response regulator [Dehalococcoides sp. CBDB1] Length = 227 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 47/223 (21%), Positives = 87/223 (39%), Gaps = 8/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD + + A +G + + D+ ++ L Sbjct: 5 ILIADDEKRIAEILQAYLEREGFRVIATYDGKTALAKFHEENPDLIILDLML--PEISGW 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R IR S VP+I ++ L L + G DD + KP +E++ARV RR + Sbjct: 63 DVCREIRKESHVPIIMLTARDELTDKLIGLEIGADDYMTKPFESKELVARVKVQLRRSEY 122 Query: 122 SNNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + + + R ++ G+ L E IL L + G+ ++ QI + Sbjct: 123 PPSPDSALVIDQLEIDQERRLVKIDGKTVDLTATEFDILISLAVSPGRVFSRMQILDKL- 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 E ++SHI LRKK+ L + + +GY + Sbjct: 182 -GEAYEGYERTIDSHIKNLRKKIEPNLESPTYILTVHGVGYKM 223 >gi|22125280|ref|NP_668703.1| DNA-binding transcriptional regulator BaeR [Yersinia pestis KIM 10] gi|45442492|ref|NP_994031.1| DNA-binding transcriptional regulator BaeR [Yersinia pestis biovar Microtus str. 91001] gi|108808286|ref|YP_652202.1| DNA-binding transcriptional regulator BaeR [Yersinia pestis Antiqua] gi|108811448|ref|YP_647215.1| DNA-binding transcriptional regulator BaeR [Yersinia pestis Nepal516] gi|145599475|ref|YP_001163551.1| DNA-binding transcriptional regulator BaeR [Yersinia pestis Pestoides F] gi|162420800|ref|YP_001607462.1| DNA-binding transcriptional regulator BaeR [Yersinia pestis Angola] gi|165926055|ref|ZP_02221887.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar Orientalis str. F1991016] gi|165937134|ref|ZP_02225699.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar Orientalis str. IP275] gi|166008422|ref|ZP_02229320.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar Antiqua str. E1979001] gi|166212312|ref|ZP_02238347.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar Antiqua str. B42003004] gi|167398888|ref|ZP_02304412.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167421266|ref|ZP_02313019.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167424469|ref|ZP_02316222.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229838428|ref|ZP_04458587.1| DNA-binding response regulator in two-component regulatory system with BaeS [Yersinia pestis biovar Orientalis str. PEXU2] gi|229895415|ref|ZP_04510587.1| DNA-binding response regulator in two-component regulatory system with BaeS [Yersinia pestis Pestoides A] gi|229898995|ref|ZP_04514139.1| DNA-binding response regulator in two-component regulatory system with BaeS [Yersinia pestis biovar Orientalis str. India 195] gi|229901707|ref|ZP_04516829.1| DNA-binding response regulator in two-component regulatory system with BaeS [Yersinia pestis Nepal516] gi|270489901|ref|ZP_06206975.1| response regulator receiver domain protein [Yersinia pestis KIM D27] gi|294504581|ref|YP_003568643.1| transcriptional response regulatory protein (sensor BaeS) [Yersinia pestis Z176003] gi|21958154|gb|AAM84954.1|AE013741_1 transcriptional response regulatory protein (sensor BaeS) [Yersinia pestis KIM 10] gi|45437357|gb|AAS62908.1| transcriptional response regulatory protein (sensor BaeS) [Yersinia pestis biovar Microtus str. 91001] gi|108775096|gb|ABG17615.1| two-component system response regulator [Yersinia pestis Nepal516] gi|108780199|gb|ABG14257.1| two-component system response regulator [Yersinia pestis Antiqua] gi|145211171|gb|ABP40578.1| two-component system response regulator [Yersinia pestis Pestoides F] gi|162353615|gb|ABX87563.1| transcriptional regulatory protein BaeR [Yersinia pestis Angola] gi|165914997|gb|EDR33609.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar Orientalis str. IP275] gi|165922259|gb|EDR39436.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar Orientalis str. F1991016] gi|165992804|gb|EDR45105.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar Antiqua str. E1979001] gi|166206243|gb|EDR50723.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar Antiqua str. B42003004] gi|166960755|gb|EDR56776.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051392|gb|EDR62800.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167056351|gb|EDR66120.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229681636|gb|EEO77730.1| DNA-binding response regulator in two-component regulatory system with BaeS [Yersinia pestis Nepal516] gi|229687940|gb|EEO80012.1| DNA-binding response regulator in two-component regulatory system with BaeS [Yersinia pestis biovar Orientalis str. India 195] gi|229694794|gb|EEO84841.1| DNA-binding response regulator in two-component regulatory system with BaeS [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701570|gb|EEO89597.1| DNA-binding response regulator in two-component regulatory system with BaeS [Yersinia pestis Pestoides A] gi|262362424|gb|ACY59145.1| transcriptional response regulatory protein (sensor BaeS) [Yersinia pestis D106004] gi|262366567|gb|ACY63124.1| transcriptional response regulatory protein (sensor BaeS) [Yersinia pestis D182038] gi|270338405|gb|EFA49182.1| response regulator receiver domain protein [Yersinia pestis KIM D27] gi|294355040|gb|ADE65381.1| transcriptional response regulatory protein (sensor BaeS) [Yersinia pestis Z176003] gi|320014344|gb|ADV97915.1| DNA-binding response regulator in two-component regulatory system with BaeS [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 239 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 44/221 (19%), Positives = 86/221 (38%), Gaps = 5/221 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + + G + + + ++ L G + Sbjct: 15 LIVEDEPKLGQLLVDYLQAAGYRTQWLTNGAEVVATVRQTPPAIILLDLML--PGSDGIT 72 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R IR S +P++ ++ L + G DD + KP RE++ARV I RR Sbjct: 73 LCREIRRFSDIPIVMVTAKTEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCSQQ 132 Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 ++ + QG + L E R+L+ L + G ++ Q+ + +Y + Sbjct: 133 RHQPTDDAPLLINESRFQASYQGHMLELTPAEFRLLKILASQPGHVFSREQLLNNLYDDY 192 Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 V + ++SHI LR+KL + + +GY + Sbjct: 193 -RVVTDRTIDSHIKNLRRKLELLDGEKPFIRAVYGMGYRWE 232 >gi|311896418|dbj|BAJ28826.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 228 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 49/222 (22%), Positives = 96/222 (43%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D ++ G G + S E L R D+ ++ L G Sbjct: 7 LLLIEDDDAIRTGLELALTRQGHRVAAAASGEDGLRLFKEQRPDLIVLDVML--PGIDGF 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120 E+ R IR Q+P+I ++ + +SG DD V KP+ R + AR+ A+ R + Sbjct: 65 EVCRRIRRTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQPRVLDARIRAVLRRGER 124 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 +++ + G + + G+ L E R+L L G+ +++ Q+ ++ Sbjct: 125 ENSDSSAYGGLVIDRSAMTVTKDGQDLQLTPTELRLLLELSRRPGQALSRQQLLRLVW-E 183 Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 D + +V++ + +LR K+ + + + R +GY +D Sbjct: 184 HDYLGDSRLVDACVQRLRAKVEDVPSAPTLIRTVRGVGYRLD 225 >gi|229094974|ref|ZP_04225973.1| Two-component response regulator [Bacillus cereus Rock3-29] gi|229113927|ref|ZP_04243356.1| Two-component response regulator [Bacillus cereus Rock1-3] gi|228669527|gb|EEL24940.1| Two-component response regulator [Bacillus cereus Rock1-3] gi|228688444|gb|EEL42323.1| Two-component response regulator [Bacillus cereus Rock3-29] Length = 239 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 45/230 (19%), Positives = 86/230 (37%), Gaps = 11/230 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ ++G + E + + ++ + Sbjct: 12 ILVVDDEKEIRKLITIYLKNEGYKVLQAGDGEEGLRMLEENEVHLVVLDIM--MPKVDGI 69 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + +R ++P+I +S + +G DD V KP + E++AR+ + RR Sbjct: 70 HMCMKVREAKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMK 129 Query: 122 SNNRAETG-------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N +R+ V GE L RE ILE L N G + QI+ Sbjct: 130 MNGFVIQNEDELEIGEMRINISTHKVIVDGEEVKLTPREFSILELLARNPGMVFSAEQIY 189 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223 ++ +N V HI K+R+K+ + + +GY I+ + Sbjct: 190 EKVWNERSFQ-SDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGYKIEKD 238 >gi|229916394|ref|YP_002885040.1| two component transcriptional regulator, winged helix family [Exiguobacterium sp. AT1b] gi|229467823|gb|ACQ69595.1| two component transcriptional regulator, winged helix family [Exiguobacterium sp. AT1b] Length = 233 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 47/226 (20%), Positives = 95/226 (42%), Gaps = 10/226 (4%) Query: 4 LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63 ++DD + G +E + + L + ++ L LE+ Sbjct: 7 VVDDEVSIATLLKFNLEQAGFEVETAHDGKTGLELAEKKDAVLIVLDLML--PEMDGLEV 64 Query: 64 PRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIYR 117 + +R P++ ++ + + G DD + KP RE++AR + + Sbjct: 65 CKRLRQQKVNTPILMLTAKDDEFDKVLGLELGADDYLTKPFSPREVVARVKAILRRSAPQ 124 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 V + + G +++ + + QGE L +E +L YL N+G+ + + Q+ SAI Sbjct: 125 ESAVEEDIIQIGDVKIVASNYEVFKQGERLELTPKEFELLAYLAKNKGRVLTRDQLLSAI 184 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 + +D + +V+ HIS LR+K+ + + R LGY ++ Sbjct: 185 W-NYDFVGDTRIVDVHISHLREKIEPVTKKPTYIKTIRGLGYKMEE 229 >gi|56413910|ref|YP_150985.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197362833|ref|YP_002142470.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56128167|gb|AAV77673.1| response regulator [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197094310|emb|CAR59820.1| response regulator [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 226 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 47/219 (21%), Positives = 93/219 (42%), Gaps = 3/219 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D + + G ++ L + ++ L G Sbjct: 3 ILLIEDNQKTIEWVRQGLTEAGYMVDYACDGRDGLHLALQEHYSLIILDIML--PGLDGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R +R Q P+I ++ S++ + ++G +D + KP E+LARV A R+ Sbjct: 61 QVLRALRTAHQSPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHVP 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 R + + + + G+ L R+E +L L + G+ V +T I S ++G+ Sbjct: 121 VFTRLTINGLDMDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWGI- 179 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + E N V+ I +LR K+ + + + R +GY + Sbjct: 180 NFDSETNTVDVAIRRLRAKVDDPFEKKLIMTVRGMGYRL 218 >gi|322411348|gb|EFY02256.1| Two-component response regulator [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 236 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 49/232 (21%), Positives = 97/232 (41%), Gaps = 16/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + + + D+ ++ L L Sbjct: 4 ILIVDDEKPISDIIKFNLTKEGYDIVTAFDGREAVTVFEDEKPDLIILDLML--PELDGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IR S VP+I +S S + + G DD V KP +RE+LARV A RR + Sbjct: 62 EVAKEIRKTSHVPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTET 121 Query: 122 SN------------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 G +++ D + G+ L RE +L +L + G+ + Sbjct: 122 IETAVAEENASSGSQELTIGNLQILPDAFVAKKHGKEVELTHREFELLHHLANHMGQVMT 181 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + + ++G +D + V+ + +LR+K+ + + + ++R +GY + Sbjct: 182 REHLLETVWG-YDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYM 232 >gi|307265851|ref|ZP_07547401.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter wiegelii Rt8.B1] gi|306919126|gb|EFN49350.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter wiegelii Rt8.B1] Length = 229 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 49/221 (22%), Positives = 96/221 (43%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + F +G ++ D+ ++ L G Sbjct: 5 ILIIEDEKHIARFLQLEFEHEGYTVTVTYDGVSGLKEALEGDYDLVLLDIML--PGIDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IR HS +P+I ++ ++ ++ D G DD V KP E+ ARV A R+ K Sbjct: 63 EVLKKIREHSDIPVIMLTAKYEVKDKVEGLDIGADDYVTKPFSIEELFARVRAALRKKKP 122 Query: 122 SNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + I + + G L ++E +LEYL+ N + + +I ++G Sbjct: 123 HLKKDVLKYSDIIMDLTTHEVRRAGIKIELTKKEFDLLEYLIKNANIALTREKILEGVWG 182 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D + N+V+ +I LR K+ + + + R +GY++ Sbjct: 183 -YDYYGDTNIVDVYIRYLRSKIDDPFDRKLIHTIRGVGYTL 222 >gi|257785147|ref|YP_003180364.1| two component transcriptional regulator, winged helix family [Atopobium parvulum DSM 20469] gi|257473654|gb|ACV51773.1| two component transcriptional regulator, winged helix family [Atopobium parvulum DSM 20469] Length = 237 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 40/225 (17%), Positives = 86/225 (38%), Gaps = 8/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D +++D A + ++G + D+ ++ L Sbjct: 8 ILIVEDEKVIRDAVSAYLERENYVVKGVGDGQSAVEEFEKHAFDLVILDLML--PKLSGE 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117 + R IR S VP+I ++ ++ + + G DD + KP R + A Y Sbjct: 66 RVCRAIRDTSNVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARVRALFRRTYS 125 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + + G + + G + E L E ++L L G+ + ++ + Sbjct: 126 EPDTAVDVLDYGTLTIDISGHKILINNEEVDLTASEFKLLTTLARYPGRVYTRMELVEKV 185 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 G +D E ++SH+ LR KL + + + +GY + Sbjct: 186 LG-YDFEGYERTIDSHVKNLRAKLGDDPRNPRWLFTVHGVGYRFE 229 >gi|68537004|ref|YP_251709.1| two-component system response regulator TcsR8 [Corynebacterium jeikeium K411] gi|260579348|ref|ZP_05847230.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC 43734] gi|68264603|emb|CAI38091.1| two-component system response regulator TcsR8 [Corynebacterium jeikeium K411] gi|258602477|gb|EEW15772.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC 43734] Length = 230 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 49/228 (21%), Positives = 95/228 (41%), Gaps = 12/228 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + + L +G + ++ D+ ++ L G E Sbjct: 5 LIVEDEQSLAEPLAFLLKKEGFEVFMAPDGPTALDTFAAEDIDIILLDLML--PGMSGTE 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA--------A 114 + R +R S VP+I ++ S + + G DD V KP RE++AR+ Sbjct: 63 VCRQLRQTSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYFARELIARIRAVLRRGGEV 122 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + + + V G+ P+P +E +LEYLM N G+ + + Q+ Sbjct: 123 EVEAPDDDGLVLQEDRVMMDVERHIVTVDGQKVPMPLKEFDLLEYLMRNSGRVLTRGQLI 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 ++G D + ++ HI +LR K+ N + + + R LGY + Sbjct: 183 DRVWGA-DYVGDTKTLDVHIKRLRSKIERNPSRPEILVTVRGLGYKFE 229 >gi|300782393|ref|YP_003762684.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299791907|gb|ADJ42282.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 229 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 53/227 (23%), Positives = 99/227 (43%), Gaps = 11/227 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D D L +G + + + D+ ++ L G + Sbjct: 5 LIVEDEESFADPLAFLLRKEGFTAAVAGTGQAALEEFDRNGADIVLLDLML--PGMSGTD 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + +R S VP+I ++ S + + G DD V KP RE++ARV A+ RR Sbjct: 63 VCKQLRQRSAVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARVRAVLRRGGEP 122 Query: 123 NNRAE-------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + E GP+R+ + V G LP +E +LEYL+ N G+ + + Q+ Sbjct: 123 GSEGELAPLVLSAGPVRMDVERHVVTVDGADVSLPLKEFDLLEYLLRNVGRVLTRGQLID 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 ++G D + ++ H+ +LR K+ + + + R LGY + Sbjct: 183 RVWGA-DYVGDTKTLDVHVKRLRSKIEPDPGSPRHLVTVRGLGYKFE 228 >gi|239627534|ref|ZP_04670565.1| two component transcriptional regulator [Clostridiales bacterium 1_7_47_FAA] gi|239517680|gb|EEQ57546.1| two component transcriptional regulator [Clostridiales bacterium 1_7_47FAA] Length = 235 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 46/229 (20%), Positives = 92/229 (40%), Gaps = 13/229 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD L+ G DG+ ++ E L D+ ++ L E Sbjct: 5 LVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEAVELAKKTEYDIVLLDVML--PKLDGYE 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + IR S +P+I ++ + + G DD ++KP + E+ AR+ AI RR + Sbjct: 63 VCQAIREFSDMPIIMLTAKGGDMDKILGLEYGADDYISKPFNILEVKARIKAIIRRSSKN 122 Query: 123 NNRAETGPIR---------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + ++ R + L +E +LE L+ N K ++ + Sbjct: 123 KRLKKEEANNSVIGQGDLKMDTESRRVFIGEREINLTAKEFDLLELLVRNPNKVYSREAL 182 Query: 174 FSAIYGLFDEA-VEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + ++G + V+ H+ +LR+K+ V +K +GY Sbjct: 183 LTYVWGNKAMDSGDVRTVDVHVRRLREKIEPSPSDPKYVHTKWGVGYYF 231 >gi|319892740|ref|YP_004149615.1| Alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus pseudintermedius HKU10-03] gi|317162436|gb|ADV05979.1| Alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus pseudintermedius HKU10-03] gi|323464228|gb|ADX76381.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus pseudintermedius ED99] Length = 234 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 43/229 (18%), Positives = 93/229 (40%), Gaps = 13/229 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + G +E E + + D+ ++ L + +E Sbjct: 6 LVVDDEQSIVTLLKYNLEQSGYVVEVAQDGEEALQKEKETKPDLIVLDVML--PKKDGIE 63 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARVA 113 + + IR+ P++ ++ + + G DD + KP RE+ Sbjct: 64 VCKTIRSDKNQVPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRRSSL 123 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + R + + G IR+ D + E+ L +E +L YL+ +G+ + + + Sbjct: 124 VDHVRKEEEDEDIVIGSIRIRPDFFEVYRNDELLELTPKEFELLLYLVERQGRVITREHM 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221 ++++ ++ A + +V+ HIS LR KL + + R LGY ++ Sbjct: 184 LNSVW-NYEFAGDSRIVDVHISHLRDKLEENPKQPQFIKTVRGLGYKLE 231 >gi|326772270|ref|ZP_08231555.1| DNA-binding response regulator [Actinomyces viscosus C505] gi|326638403|gb|EGE39304.1| DNA-binding response regulator [Actinomyces viscosus C505] Length = 238 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 50/225 (22%), Positives = 95/225 (42%), Gaps = 10/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD ++ G+S + L + DV ++ L G +E Sbjct: 13 LVVDDEPVLSGTVKNYLERAGMSAQTCGDGLAALDLVRATAPDVVVLDLGL--PGMDGVE 70 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120 + R +R S ++ ++ L G DD + KP RE++AR+ + RR + Sbjct: 71 VCRQLRTFSDCYVLMLTARADEVDKLIGLSVGADDYMTKPFSPRELVARIQVLLRRPRAG 130 Query: 121 ----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + G + + R E+ L R E +L+ L + G + + Q+ A Sbjct: 131 STGATAAVVHRIGALTLDPSSRRVELDASPVELTRTEFDLLQALAEHPGWVLNRRQLTDA 190 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 ++G D ++++V+ HI+ LRKKL + V + R +GY + Sbjct: 191 VWGE-DWVGDDHLVDVHIAHLRKKLGDDPSQPRFVQTVRGVGYRM 234 >gi|255324243|ref|ZP_05365365.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Corynebacterium tuberculostearicum SK141] gi|255298759|gb|EET78054.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Corynebacterium tuberculostearicum SK141] Length = 235 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 52/234 (22%), Positives = 98/234 (41%), Gaps = 17/234 (7%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + D L +G + ++ D+ ++ L G Sbjct: 4 ILIVEDEESLADPLAFLLRKEGFEPIIAHDGPTALEKFAANDIDIVLLDLML--PGMSGT 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + +R S VP+I ++ S + + G DD V KP RE++AR+ A+ RR Sbjct: 62 EVCKQLRTTSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLRRGHD 121 Query: 122 S-------------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 S E G +++ + V E +P +E +LEYL+ N G+ + Sbjct: 122 SGAGADTEAEEEVAEQILEGGRVKMDVERHTVTVADEPVSMPLKEFDLLEYLLRNAGRVL 181 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + Q+ I+G D + ++ H+ +LR K+ + + R LGY + Sbjct: 182 TRGQLIDRIWGA-DYVGDTKTLDVHVKRLRSKIEEQPSRPKHLVTVRGLGYKFE 234 >gi|170759704|ref|YP_001785583.1| regulatory protein VanR [Clostridium botulinum A3 str. Loch Maree] gi|169406693|gb|ACA55104.1| regulatory protein VanR [Clostridium botulinum A3 str. Loch Maree] Length = 228 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 36/227 (15%), Positives = 82/227 (36%), Gaps = 10/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D ++D + + + D+ ++ L L Sbjct: 4 ILIIEDDEDIRDILKLYLEGQSYEILEAENGAEATKQL-VKQPDLVILDLML--PDIDGL 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH------REILARVAAI 115 + + IR P+I I+ + Q + G DD + KP + + R Sbjct: 61 SICKSIRKKYYYPIIMITAKNADQDKILGLSYGADDYITKPFNPLEVVARVKAQLRRYKQ 120 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 Y + + + + + L E +ILE L+ +G+ ++ ++F+ Sbjct: 121 YDENITDTESIYYKALTLNQKSKQVSINEKEIKLTPTEFKILEVLLKKKGEVLSGEELFN 180 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221 I+ + N + H+ LR+K+ + + + + +GY I+ Sbjct: 181 LIWEDEYYSKSTNTITVHVRNLREKMGDSFEKPEYIKTVWGVGYIIE 227 >gi|154688139|ref|YP_001423300.1| YycF [Bacillus amyloliquefaciens FZB42] gi|308175750|ref|YP_003922455.1| transcriptional regulatory protein WalR [Bacillus amyloliquefaciens DSM 7] gi|154353990|gb|ABS76069.1| YycF [Bacillus amyloliquefaciens FZB42] gi|307608614|emb|CBI44985.1| Transcriptional regulatory protein WalR [Bacillus amyloliquefaciens DSM 7] gi|328914110|gb|AEB65706.1| Transcriptional regulatory protein yycF [Bacillus amyloliquefaciens LL3] Length = 236 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 40/228 (17%), Positives = 92/228 (40%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + + + D+ ++ L + + Sbjct: 6 ILVVDDEKPIADILEFNLRKEGYDVHCAYDGNEAVEMVEELQPDLILLDIML--PNKDGV 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR--------EILARVA 113 E+ R +R +P+I ++ S + + G DD V KP R + ++ Sbjct: 64 EVCREVRKKYDMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLRRQLT 123 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + ++N G + +F D + E L RE +L YL + G+ + + + Sbjct: 124 VAPAEEESASNDIHIGSLVIFPDAYVVSKREETIELTHREFELLHYLAKHIGQVMTREHL 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++G +D + V+ + +LR+K+ + + + ++R +GY + Sbjct: 184 LQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPNWIVTRRGVGYYL 230 >gi|111024797|ref|YP_707217.1| response regulator, two-component system [Rhodococcus jostii RHA1] gi|110823776|gb|ABG99059.1| response regulator, two-component system [Rhodococcus jostii RHA1] Length = 225 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 47/221 (21%), Positives = 97/221 (43%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + G +G +++ ++ W+ D ++ L G Sbjct: 3 LLVVEDERRLAAGLRKGLEAEGFAVDVVHNGTDGLWMARENPFDAIVLDIML--PGANGY 60 Query: 62 ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ R + + P++ ++ + ++ D+G DD + KP + +LAR+ A+ RR Sbjct: 61 QVCRTLRNEGNWTPILMLTAKVGIWDEVEGLDTGADDYLAKPFSYAVLLARLRALLRRGA 120 Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 R+ R +GE L RE +LE+L+ + G+ + KT I ++ Sbjct: 121 RPRPTVLEVGDLRLDPSARRVWRRGEQIDLTTREFAVLEFLLRHPGEVLPKTDILGHVWD 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 FD + N+VE ++ +LR KL +++ R GY + Sbjct: 181 -FDFDGDPNIVEVYVRRLRTKLGRPTDPPVIETVRGAGYRL 220 >gi|322387744|ref|ZP_08061353.1| DNA-binding response regulator [Streptococcus infantis ATCC 700779] gi|321141611|gb|EFX37107.1| DNA-binding response regulator [Streptococcus infantis ATCC 700779] Length = 234 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 48/233 (20%), Positives = 96/233 (41%), Gaps = 14/233 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + + L + + D+ ++ L L Sbjct: 4 ILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREAIELFEAEKPDIIILDLML--PEIDGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-------- 113 E+ + IR S VP+I +S S + + G DD V KP +RE+ ARV Sbjct: 62 EVAKTIRKTSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTEL 121 Query: 114 --AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + + + + D + GE L RE +L +L ++ G+ + + Sbjct: 122 VAVDNQEEDTKLQSLQIRDLEILPDAYVAKKYGEELDLTHREFELLHHLASHLGQVITRE 181 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223 + ++G +D + V+ I +LR+K+ + + + ++R +GY + N Sbjct: 182 HLLETVWG-YDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 233 >gi|326777052|ref|ZP_08236317.1| two component transcriptional regulator, winged helix family [Streptomyces cf. griseus XylebKG-1] gi|326657385|gb|EGE42231.1| two component transcriptional regulator, winged helix family [Streptomyces cf. griseus XylebKG-1] Length = 228 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 50/222 (22%), Positives = 94/222 (42%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D ++ G + + E L R D+ ++ L G Sbjct: 7 LLLIEDDDAIRTALELSLSRQGHRVATAATGEDGLELLREQRPDLVVLDVML--PGIDGF 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120 E+ R IR Q+P+I ++ + +SG DD V KP+ R + AR+ A+ R + Sbjct: 65 EVCRRIRRTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGER 124 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 S + A G + + GE L E R+L L G+ +++ Q+ ++ Sbjct: 125 ESTDSATFGNVVIDRSAMTVTKDGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVW-E 183 Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 D + +V++ + +LR K+ + + + R +GY +D Sbjct: 184 HDYLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRLD 225 >gi|229011292|ref|ZP_04168484.1| DNA-binding response regulator [Bacillus mycoides DSM 2048] gi|228749948|gb|EEL99781.1| DNA-binding response regulator [Bacillus mycoides DSM 2048] Length = 225 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 40/222 (18%), Positives = 95/222 (42%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ +G R +++ I+ Sbjct: 5 ILIVDDDPHIRELVSVFLEREGFQTYEAVDGLDALRKIEEVRVEMAIIDIM--MPNMDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 +L +R + +P++ ++ + F G DD + KP E++ RV A+ +R ++ Sbjct: 63 DLCYELRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPLELVVRVKALLKRYQI 122 Query: 122 SNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + +++ + + V + LP +E +L L + G+ ++ Q+ ++G Sbjct: 123 TVSQSIQVGNVLLNRKTFEVNVGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG- 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D E ++ HI++LR+K + +L + + R LGY ++ Sbjct: 182 YDFEGNERTLDVHINRLREKFQEELSKFSIRTIRGLGYRLEV 223 >gi|116332709|ref|YP_794236.1| DNA-binding response regulator [Lactobacillus brevis ATCC 367] gi|116098056|gb|ABJ63205.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus brevis ATCC 367] Length = 238 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 47/229 (20%), Positives = 91/229 (39%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + E D+ ++ L L Sbjct: 5 ILVVDDEKPISDIMKFNLEKEGYEVAVAYDGEAAVQAVEEDVPDLVILDLML--PKIDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR +P+I ++ S + + G DD V KP +RE++ARV A RR Sbjct: 63 EVAREIRKKHDMPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQNT 122 Query: 122 SNNRAETGPIRVF---------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + P + +G L RE +L YL + G+ + + Sbjct: 123 AAHAQPEEPENQDIEIGDLTIHPEAYSVSKRGANIELTHREFELLHYLAQHIGQVMTREH 182 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + ++G +D + V+ + +LR+K+ + + ++R +GY + Sbjct: 183 LLQTVWG-YDYFGDVRTVDVTVRRLREKIEDSPSHPTWLVTRRGVGYYL 230 >gi|325002312|ref|ZP_08123424.1| two component response transcriptional regulatory protein MprA [Pseudonocardia sp. P1] Length = 232 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 48/228 (21%), Positives = 93/228 (40%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V+D +G ++ + + R D ++ L Sbjct: 3 ILVVDDDKAVRDSLRRSLAFNGYQVDLAEDGQAALDRMLTDRPDALVLDVM--MPRVDGL 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +R+ P++ ++ ++ + D+G DD + KP E+LAR+ A+ RR Sbjct: 61 EVCRRLRSAGDDLPILVLTARDAVSDRVAGLDAGADDYLPKPFALEELLARLRALLRRRV 120 Query: 121 VSNNRAETGPIRV--------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + P D R+ G L R E +LE L+A+ + + + Q Sbjct: 121 PDTDDGADPPSAALTFADLSLDPDTREVSRGGRSISLTRTEFSLLELLLAHPRRVLTRGQ 180 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I ++G +D N +E ++ LR+K + + R +GY + Sbjct: 181 ILEQVWG-YDFPTSGNALEVYVGYLRRKTEADGEPRLIHTVRGVGYVL 227 >gi|238923975|ref|YP_002937491.1| response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Eubacterium rectale ATCC 33656] gi|238875650|gb|ACR75357.1| response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Eubacterium rectale ATCC 33656] gi|291524721|emb|CBK90308.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium rectale DSM 17629] gi|291528957|emb|CBK94543.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium rectale M104/1] Length = 230 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 49/226 (21%), Positives = 91/226 (40%), Gaps = 10/226 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD L+ G DG+ ++ E + + D+ ++ L E Sbjct: 6 LVVDDEKLIVKGIRFSLLQDGMEVDCAYDGEEALNMAKANSYDMILLDVML--PKMDGFE 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + IR S VP++ ++ + + G DD + KP + E+ AR+ AI RR Sbjct: 64 VCQAIREFSDVPIVMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRTSPE 123 Query: 123 NNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + D R + L RE +LE L+ N K ++ + Sbjct: 124 RAPQVQSSVIEKGDIKLDCDSRRLFINDNEINLTAREFELLEILIKNENKVYSRESLLKI 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 ++G D + V+ H+ +LR+K+ N V +K +GY + Sbjct: 184 VWGE-DYPGDVRTVDVHVRRLREKIEANPSEPKYVHTKWGVGYYYN 228 >gi|85373907|ref|YP_457969.1| phosphate regulon response regulator [Erythrobacter litoralis HTCC2594] gi|84786990|gb|ABC63172.1| phosphate regulon response regulator [Erythrobacter litoralis HTCC2594] Length = 229 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 52/225 (23%), Positives = 103/225 (45%), Gaps = 4/225 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +L++D + + F ++G + + + + S D+ ++ + G G +V Sbjct: 6 LLLVEDDPALAELLEYRFTNEGYGVRTTSDGDEALLMASEDVPDLVILDWMIEGTSGIEV 65 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 R + + VP+I ++ + + D+G DD + KP RE+LARVAA+ RR++ Sbjct: 66 CRRLRREKETAHVPIIMLTAREAEDDRVRGLDTGADDYMVKPFSPRELLARVAAVMRRIR 125 Query: 121 VSNNRAETGPIRV--FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + +GE L E R+L++ M + G+ ++ Q+ ++ Sbjct: 126 PALAGETIQAGDIVLDPVAHKVSRRGETLQLGPTEYRLLKFFMESPGRVFSRGQLLDGVW 185 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 G +E V+ HI +LRK + DP+ + R GY+++ N Sbjct: 186 GTG-SDIELRTVDVHIRRLRKAIDVPGADDPIRTVRSAGYALETN 229 >gi|16419611|gb|AAL20028.1| Copper resistance transcriptional regulatory protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|261246309|emb|CBG24118.1| response regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|301157639|emb|CBW17131.1| response regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|332987989|gb|AEF06972.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 248 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 47/219 (21%), Positives = 94/219 (42%), Gaps = 3/219 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D + + G ++ L + ++ L G Sbjct: 25 ILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIML--PGLDGW 82 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R +R Q P+I ++ S++ + ++G +D + KP E+LARV A R+ Sbjct: 83 QVLRALRTAHQSPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHVP 142 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + R + + + + G+ L R+E +L L + G+ V +T I S ++G+ Sbjct: 143 AFTRLTINGLDMDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWGI- 201 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + E N V+ I +LR K+ + + + R +GY + Sbjct: 202 NFDSETNTVDVAIRRLRAKVDDPFEKKLIMTVRGMGYRL 240 >gi|164686841|ref|ZP_02210869.1| hypothetical protein CLOBAR_00437 [Clostridium bartlettii DSM 16795] gi|164604231|gb|EDQ97696.1| hypothetical protein CLOBAR_00437 [Clostridium bartlettii DSM 16795] Length = 227 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 44/222 (19%), Positives = 96/222 (43%), Gaps = 9/222 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D +++G + G + + L S D+ ++ L Sbjct: 11 ILIVEDEIDIREGISEYLSEVGYDVMVAEDGQEGIDLFKSNEFDLVLLDIML--PKINGF 68 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 + IR S VP++ ++ + + F+ DD + KP + R+ A+ RR++ Sbjct: 69 GVLSQIREISDVPVMMLTAMTDDYSQIMSFNEKADDYITKPFSVVVLHKRIEALQRRIQG 128 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 NN+ + V G + L +E ++LE L+ ++ + + + Q+ +++ Sbjct: 129 RQQNNKWIYKDVEVDFLGFCAKKDNNPVDLKPKEIKLLELLIKHKNQVLTRNQMLDSLW- 187 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 DEA + V++ +I LRKKL D + + + +GY + Sbjct: 188 EIDEAPADRVIDVYIKNLRKKLDL----DCITTVKGIGYKFE 225 >gi|62127249|gb|AAX64952.1| Copper resistance; transcriptional regulatory protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] Length = 248 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 47/219 (21%), Positives = 92/219 (42%), Gaps = 3/219 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D + + G ++ L + ++ L G Sbjct: 25 ILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIML--PGLDGW 82 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R +R Q P I ++ S++ + ++G +D + KP E+LARV A R+ Sbjct: 83 QVLRALRTAHQSPAICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHVP 142 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 R + + + + G+ L R+E +L L + G+ V +T I S ++G+ Sbjct: 143 VFTRLTINGLDMDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWGI- 201 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + E N V+ I +LR K+ + + + R +GY + Sbjct: 202 NFDSETNTVDVAIRRLRAKVDDPFEKKLIMTVRGMGYRL 240 >gi|229000526|ref|ZP_04160071.1| Two component transcriptional regulator, winged helix [Bacillus mycoides Rock3-17] gi|229007908|ref|ZP_04165478.1| Two component transcriptional regulator, winged helix [Bacillus mycoides Rock1-4] gi|228753336|gb|EEM02804.1| Two component transcriptional regulator, winged helix [Bacillus mycoides Rock1-4] gi|228759238|gb|EEM08239.1| Two component transcriptional regulator, winged helix [Bacillus mycoides Rock3-17] Length = 248 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 43/231 (18%), Positives = 90/231 (38%), Gaps = 12/231 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D +++ +G + + L + + D+ ++ + Sbjct: 13 ILIIEDEENIREVCKRYLEREGYEVYTAMNGMEGWDLFLTHQPDLILLDLM--MPKKDGW 70 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL IR S VP+I ++ + + G DD V KP RE++ RV I +R Sbjct: 71 ELCEEIRQQSNVPIIMLTAKGEERDRILGLTIGADDYVTKPFSPRELVLRVQIILKRGNQ 130 Query: 122 SNNR--------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + E ++++ R V L +E +L + + + +++Q+ Sbjct: 131 IPIQEEEFLSEVIEFPDLKIYPKTRCVLVCENKVELTVKEFEVLYVMAKHPKQVFSRSQL 190 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223 I+ F+ + V +S+LR+KL + + +GY + N Sbjct: 191 LELIWD-FEYDGVTHTVTVLVSRLREKLEKHTIKNRWIHTVWGIGYCFEPN 240 >gi|221195251|ref|ZP_03568307.1| transcriptional regulatory protein ResD [Atopobium rimae ATCC 49626] gi|221185154|gb|EEE17545.1| transcriptional regulatory protein ResD [Atopobium rimae ATCC 49626] Length = 241 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 45/225 (20%), Positives = 93/225 (41%), Gaps = 8/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D +++D A + ++ G + D+ ++ L Sbjct: 8 ILIVEDETVIRDAVSAYLERENYAVRGVGDGQSAVEEFQKHSFDLVILDLML--PKLSGE 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R IR S VP+I ++ ++ + + G DD + KP RE++ARV A++RR Sbjct: 66 RVCRAIRDVSNVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARVRALFRRAHK 125 Query: 122 SNNRAETGPIR----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + G ++GE L E ++L L G+ ++ ++ + Sbjct: 126 ESEPQPEVLEYGALTIDISGHKILIRGEEVDLTASEFKLLTTLARYPGRVYSRMELVEKV 185 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 G +D E ++SH+ LR KL + + + +GY + Sbjct: 186 LG-YDFEGYERTIDSHVKNLRAKLGDDPRNPHWLFTVHGVGYRFE 229 >gi|119492324|ref|ZP_01623671.1| Two component Transcriptional regulator, Winged helix family protein [Lyngbya sp. PCC 8106] gi|119453209|gb|EAW34376.1| Two component Transcriptional regulator, Winged helix family protein [Lyngbya sp. PCC 8106] Length = 233 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 42/225 (18%), Positives = 92/225 (40%), Gaps = 8/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ +E E D+ ++ L Sbjct: 6 ILVVDDDPAIRNLIARYLSQQDYEVESAKDGETALECFDQFSPDLVVLDVNL--PDTTGF 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L + +++ + V ++ ++ + FD G DD + KP E+ ARV AI +R + Sbjct: 64 ILCQEMQSRTSVFILLLTSLTGEADKIKGFDKGADDYITKPFGLAELGARVRAILKRQRS 123 Query: 122 SNNRAETGPIR----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + + R+ + ++ PL E +L L + G+ ++++ + Sbjct: 124 VADSEPRSLVYGDLLIDPSRREVYIDDKLIPLSALEFDLLYCLASKPGRAWRRSELLQEV 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221 + +D E+ VV+ HI ++RKK+ + + + R +GY D Sbjct: 184 WD-YDYEGEQRVVDVHIGQIRKKVEPDVNKPVLIKTIRGVGYMFD 227 >gi|320161667|ref|YP_004174892.1| OmpR family two-component response regulator [Anaerolinea thermophila UNI-1] gi|319995521|dbj|BAJ64292.1| OmpR family two-component response regulator [Anaerolinea thermophila UNI-1] Length = 226 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 45/225 (20%), Positives = 95/225 (42%), Gaps = 10/225 (4%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + +L+DD + +G ++ + + D+ ++ L Sbjct: 5 LILLVDDEPSIVSLCRMYLEREGFRVQSAGDGVTALEMLKKSPPDLMILDVML--PELDG 62 Query: 61 LELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 E+ + +RA + P++ ++ + + G DD + KP + RE++ARV AI RR Sbjct: 63 FEVCKQLRAQNDPLPILMLTARDEDYDKILGLELGADDYMTKPFNPRELVARVKAILRRT 122 Query: 120 KVSNNRAETGPIR----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + + V + + PL +E +L L N G+ +++ Q+ Sbjct: 123 RHQTHEDQNVIRIGNIVVDPARYEVRNGDYLIPLRAQEFEVLCVLARNAGRVLSREQLLE 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G FD + V+ HI++LR+KL + +++ +GY + Sbjct: 183 KAWG-FDFYGQTRTVDVHIAQLRRKLADSG--VTIETVTGVGYKL 224 >gi|311032627|ref|ZP_07710717.1| two-component response regulator [Bacillus sp. m3-13] Length = 227 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 46/220 (20%), Positives = 86/220 (39%), Gaps = 5/220 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD A +++ + + + E + D+ ++ Sbjct: 8 LVVDDEAEMREMLGMYLQKENYQVLHAENGEEALDMLYDHEVDLIILDVM--MPDMDGFT 65 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-ILARVAAIYRRLKV 121 + IR +P++ ++ + G DD V KP +E + A + R + Sbjct: 66 ACKKIREKYMMPILMLTAKSDELDKVRGLKLGADDYVMKPFSPKELLARVEALLRRSNQA 125 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + I V R V GE L RRE +L +LM + GK ++ Q+ I+GL Sbjct: 126 FFDVVSHSEITVQKSARQVLVGGERINLARREYDLLLFLMEHEGKVFSREQLHDVIWGLD 185 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E V++H+ LR KL++ + + +GY D Sbjct: 186 TEKGSYRTVDTHVKTLRFKLKDAGAK--IKTVWGIGYKFD 223 >gi|309790846|ref|ZP_07685390.1| response regulator receiver [Oscillochloris trichoides DG6] gi|308227133|gb|EFO80817.1| response regulator receiver [Oscillochloris trichoides DG6] Length = 225 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 44/221 (19%), Positives = 94/221 (42%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + + +G + + A D+ ++ L G + Sbjct: 5 ILIIEDELEIANYLRRGLILEGFQVSVAHDGPQGLEFAREAAHDLVVLDLML--PGIDGI 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119 E+ R +RA S VP+I ++ S+ + ++G DD + KP E+ RV R+ Sbjct: 63 EVARRLRAASDVPIIILTARDSVPDRVTGLEAGADDYLVKPFAFAELLARIRVQLRRRQS 122 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++ + + + R+ + L +E +L+ M + + + + I+ ++G Sbjct: 123 AQQSDILRFANLTLDTAARELRIGDRRIDLTAKEYDLLDLFMRHPNQVLTREVIYDRVWG 182 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D E N++E ++ LR+KL G + + R GY + Sbjct: 183 -YDFGGESNIIEVYVRYLRQKLEAGGGSRVIQTVRGAGYIL 222 >gi|269138436|ref|YP_003295136.1| phosphate regulon transcriptional regulatory protein [Edwardsiella tarda EIB202] gi|267984096|gb|ACY83925.1| phosphate regulon transcriptional regulatory protein [Edwardsiella tarda EIB202] gi|304558462|gb|ADM41126.1| Phosphate regulon transcriptional regulatory protein PhoB [Edwardsiella tarda FL6-60] Length = 229 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 40/222 (18%), Positives = 92/222 (41%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D ++D + +G S + D+ ++ L G G ++ Sbjct: 5 ILVVEDETPIRDMVSFVLEQNGYQPLEAESYDGALSQLCEPYPDLILLDWMLPGGSGIQL 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ + A ++P++ ++ + + + G DD + KP +E++AR+ A+ RR+ Sbjct: 65 IKQLKREPATREIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRRIS 124 Query: 121 VSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + Q + + E ++L + M + + ++ Q+ + ++ Sbjct: 125 PMALEETINLQGLSLDPVSHRVTAQDDAVEMGPTEFKLLHFFMTHPERVYSREQLLNHVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G + VE+ V+ HI +LRK L V + R GY Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALEGSGHDRMVQTVRGTGYRF 225 >gi|251799985|ref|YP_003014716.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247547611|gb|ACT04630.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 238 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 50/231 (21%), Positives = 86/231 (37%), Gaps = 14/231 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ +D + + G +G L L + D+ ++ Sbjct: 8 ILIAEDDPDIAELIALHLGKEGYQLLKAADGREAVRLVQTNTIDLVILDIM--MPHMDGY 65 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R+IR +P+I +S S + G DD + KP + E+LARV A RR + Sbjct: 66 EVVRVIREQQYRMPIIFLSAKTSDFDKISGLVMGADDYMTKPFNPMELLARVNAQLRRFR 125 Query: 121 VSNNRAETGPI----------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 N + + R+ + + L +E IL L ++ K + Sbjct: 126 QLNQPVAAPTHAASAIVAGGLTIDQEQRNVTLYNDRIDLTPKEFDILYLLASHPKKVFSA 185 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220 IF ++G N V HI LRKKL +K + + +GY+ Sbjct: 186 EHIFQQVWGEAYYESGGNTVMVHIRTLRKKLGEDKQHQQWIKTVWGVGYAF 236 >gi|323126805|gb|ADX24102.1| Two-component response regulator [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 236 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 49/232 (21%), Positives = 97/232 (41%), Gaps = 16/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + + + D+ ++ L L Sbjct: 4 ILIVDDEKPISDIIKFNLTKEGYGIVTAFDGREAVTIFEEEKPDLIILDLML--PELDGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IR S VP+I +S S + + G DD V KP +RE+LARV A RR + Sbjct: 62 EVAKEIRKTSHVPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTET 121 Query: 122 SN------------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 G +++ D + G+ L RE +L +L + G+ + Sbjct: 122 IETAVAEENASSGSQELTIGNLQILPDAFVAKKHGKEVELTHREFELLHHLANHMGQVMT 181 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + + ++G +D + V+ + +LR+K+ + + + ++R +GY + Sbjct: 182 REHLLETVWG-YDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGIGYYM 232 >gi|289548094|ref|YP_003473082.1| transcriptional regulator [Thermocrinis albus DSM 14484] gi|289181711|gb|ADC88955.1| two component transcriptional regulator, winged helix family [Thermocrinis albus DSM 14484] Length = 226 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 47/219 (21%), Positives = 98/219 (44%), Gaps = 4/219 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + + +G ++E D+ ++ L + Sbjct: 4 ILLVEDDLYLGQMMVEGLRHEGFTVEWVQDGFTALRRVVEENYDLVILDIML--PKFDGM 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R IR +P+I ++ ++ ++ +G DD + KP +E+ AR+ A+ RR + Sbjct: 62 KVCRKIRETKDIPVIMVTARSQIEDKVEGLSAGADDYITKPFSFKELSARIQAVLRRYRK 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 G +R+ + +G+ L RRE +L+ L N + V++ +I++ ++G Sbjct: 122 KEGVIMVGDLRIDPSAVEVTYRGQKIHLTRREFELLKLLAENANRVVSREEIYAKVWGYS 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 E N+V+ +I LR KL +K + + R GY + Sbjct: 182 HEEG-SNIVDVYIKNLRNKLGDKP-PRLIQTVRGYGYIL 218 >gi|270289944|ref|ZP_06196170.1| two-component system, OmpR family, response regulator VicR [Pediococcus acidilactici 7_4] gi|304385805|ref|ZP_07368149.1| response regulator [Pediococcus acidilactici DSM 20284] gi|270281481|gb|EFA27313.1| two-component system, OmpR family, response regulator VicR [Pediococcus acidilactici 7_4] gi|304328309|gb|EFL95531.1| response regulator [Pediococcus acidilactici DSM 20284] Length = 233 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 47/227 (20%), Positives = 90/227 (39%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + E S D+ ++ L L Sbjct: 4 ILVVDDEKPISDIVKFNLDKEGYDVVTAYDGEEALEKVESEEPDLILLDLML--PKIDGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-------ILARVAA 114 E+ R +RA +P+I ++ S + + G DD V KP +RE L R Sbjct: 62 EVARQVRAKHNIPIIMVTAKDSELDKVVGLELGADDYVTKPFSNRELVARVKANLRRQDQ 121 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + N + GP+ + SD G L RE +L YL + + + + + Sbjct: 122 FQQSNEEVKNNIKIGPLVINSDSYSVTRDGAQLDLTHREFELLHYLAQHTDQVMTREHLL 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++G +D + V+ + +LR+K+ + ++R +GY + Sbjct: 182 QTVWG-YDYFGDVRTVDVTVRRLREKIEETPSNPQILVTRRGVGYYL 227 >gi|170761766|ref|YP_001788740.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridium botulinum A3 str. Loch Maree] gi|169408755|gb|ACA57166.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridium botulinum A3 str. Loch Maree] Length = 226 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 43/224 (19%), Positives = 90/224 (40%), Gaps = 5/224 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + +G ++ + + ++ + G + Sbjct: 6 ILLVEDEEQMSMFIEMELTHEGYKVDVAYDGREALEKVENTEYQLILLDIMI--PGLNGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119 E+ R IR S VP+I ++ + + D G +D + KP E+ RV + + Sbjct: 64 EVCRRIRQFSCVPIIMLTAKSDVSDKVLGLDVGANDYLTKPFAIEELLARIRVYEREKLV 123 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 K + + I + + G L ++E +L+ L+ N+ + + ++ ++G Sbjct: 124 KSKFDEVKVKDIVMDNKTHQVWRSGREIELTKKEYDLLQKLLINKNIVLTRERLIEEVWG 183 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 +D + NVV+ I LR K+ N + + R +GY I N Sbjct: 184 -YDYVGDTNVVDVFIRYLRSKIDNGSKEKLITTIRGVGYVIKDN 226 >gi|308175221|ref|YP_003921926.1| hypothetical protein BAMF_3330 [Bacillus amyloliquefaciens DSM 7] gi|307608085|emb|CBI44456.1| Uncharacterized transcriptional regulatory protein RBAM_032050 [Bacillus amyloliquefaciens DSM 7] gi|328555193|gb|AEB25685.1| hypothetical protein BAMTA208_17665 [Bacillus amyloliquefaciens TA208] Length = 225 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 48/222 (21%), Positives = 89/222 (40%), Gaps = 5/222 (2%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + ++ DD +++ + G + E L S D+ ++ Sbjct: 3 VILVADDDRHIRELVRLMMEQSGFDVAEAEDGEAAVQLIESTHIDLIILDVM--MPKMDG 60 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ +R+ + +P++ ++ + F SG DD + KP E+ ARV A+ +R + Sbjct: 61 FEVSEAVRSFTDIPILMLTAKGETLDKVQGFTSGADDYLVKPFEPLELEARVKALLKRYR 120 Query: 121 VSNNRAETGPIRVF--SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++ + T G LPRRE +L L K ++ + I+ Sbjct: 121 ITAEKLLTIGTVTLDKQSRTVTRGGGSGMTLPRREFELLFKLAGYPNKTFSREHLIEDIW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G FD +E V+ HI +LR++ K + + R LGY Sbjct: 181 G-FDYEGDERTVDVHIKRLRERFPEKDYPFAIHTVRGLGYRF 221 >gi|158319979|ref|YP_001512486.1| two component transcriptional regulator [Alkaliphilus oremlandii OhILAs] gi|158140178|gb|ABW18490.1| two component transcriptional regulator, winged helix family [Alkaliphilus oremlandii OhILAs] Length = 227 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 43/222 (19%), Positives = 94/222 (42%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G +E + + D+ ++ L + Sbjct: 6 ILIVEDEIKIARFLELELTHEGYDVEQAHDGREGVQKAQNEPFDLIILDIML--PHINGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118 E+ R IR S +P+I ++ + + D G +D + KP E + R+ Sbjct: 64 EVLRKIRQTSTIPIIMLTAKDEVMDKVIGLDMGANDYMTKPFAIEELLARIRAALKAGRQ 123 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 L N + G +++ +D E+ L ++E +L Y + N+ + + +I A++ Sbjct: 124 LVSKENTLQLGNLKLDTDMYKVTYGTEIIELTKKEFDLLHYFLENKNIVLTRDKILQAVW 183 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G +D + N+V+ +I LR K+ +K + + R +GY + Sbjct: 184 G-YDYIGDTNIVDVYIRYLRSKIDDKYNIKLIHTVRGVGYIL 224 >gi|309811868|ref|ZP_07705641.1| sensory transduction protein RegX3 [Dermacoccus sp. Ellin185] gi|308434157|gb|EFP58016.1| sensory transduction protein RegX3 [Dermacoccus sp. Ellin185] Length = 237 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 51/224 (22%), Positives = 97/224 (43%), Gaps = 9/224 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD ++ G+S + L + DV ++ L G +E Sbjct: 13 LVVDDEPVLSGTVKNYLERAGMSAQTCGDGLVALDLVRATAPDVVVLDLGL--PGMDGVE 70 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120 + R +R S ++ ++ L G DD + KP RE++AR+ + RR + Sbjct: 71 VCRQLRTFSDCYVLMLTARADEVDKLIGLSVGADDYMTKPFSPRELVARIQVLLRRPRAG 130 Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + G + V R E+ L R E +L+ L + G+ + + Q+ A+ Sbjct: 131 GAGTTASVLRIGALTVDQSSRRVELDASPVELTRTEFDLLQALAEHPGRVLNRRQLTDAV 190 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 +G D ++++V+ HI+ LRKKL + V + R +GY + Sbjct: 191 WGE-DWVGDDHLVDVHIAHLRKKLGDDPSQPRFVQTVRGVGYRM 233 >gi|33864259|ref|NP_895819.1| two-component response regulator [Prochlorococcus marinus str. MIT 9313] gi|33641039|emb|CAE22168.1| two-component response regulator [Prochlorococcus marinus str. MIT 9313] Length = 248 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 92/228 (40%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++ G + + + D+ ++ Sbjct: 11 ILVVDDEASIRRILETRLSMIGYQVFTACDGNEALDIFHNCEPDLVVLDVM--MPKLDGY 68 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + +R S VP++ ++ + + + G DD V KP +E+ AR+ + RR++ Sbjct: 69 GVCQELRKESDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRVEK 128 Query: 122 SNNRAETGPI-------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + RV ++ R E L E +LE L++ G+ ++ +I Sbjct: 129 EHVAGIPNSGVIQVAELRVDTNKRQVFRGDERIRLTGMEFSLLELLVSRSGEPFSRGEIL 188 Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 ++G + V+ VV+ HIS+LR KL + + + + R GY Sbjct: 189 KEVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGYLF 236 >gi|21223281|ref|NP_629060.1| transcriptional regulatory protein [Streptomyces coelicolor A3(2)] gi|289769509|ref|ZP_06528887.1| transcriptional regulatory protein afsQ1 [Streptomyces lividans TK24] gi|19862536|sp|Q04942|AFSQ1_STRCO RecName: Full=Transcriptional regulatory protein AfsQ1 gi|13162096|emb|CAC33072.1| transcriptional regulatory protein [Streptomyces coelicolor A3(2)] gi|289699708|gb|EFD67137.1| transcriptional regulatory protein afsQ1 [Streptomyces lividans TK24] Length = 225 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 49/222 (22%), Positives = 93/222 (41%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D ++ G + S E L R D+ ++ L G Sbjct: 4 LLLIEDDDAIRTALELSLTRQGHRVATAASGEDGLKLLREQRPDLIVLDVML--PGIDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR Q+P+I ++ + +SG DD V KP+ R + AR+ A+ RR + Sbjct: 62 EVCRRIRRTDQLPIILLTARNDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGER 121 Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + + + GE L E R+L L G+ +++ Q+ ++ Sbjct: 122 ESTDSASFGSLVIDRSAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVW-E 180 Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 D + +V++ + +LR K+ + + + R +GY +D Sbjct: 181 HDYLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRLD 222 >gi|291437627|ref|ZP_06577017.1| transcriptional regulatory protein [Streptomyces ghanaensis ATCC 14672] gi|291340522|gb|EFE67478.1| transcriptional regulatory protein [Streptomyces ghanaensis ATCC 14672] Length = 225 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 51/222 (22%), Positives = 95/222 (42%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D ++ G + S E L R D+ ++ L G Sbjct: 4 LLLIEDDDAIRTALELSLTRQGHRVATAASGEDGLKLLREQRPDLIVLDVML--PGIDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120 E+ R IR Q+P+I ++ + +SG DD V KP+ R + AR+ A+ R + Sbjct: 62 EVCRRIRRTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGER 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 S++ A G + + GE L E R+L L G+ +++ Q+ ++ Sbjct: 122 ESSDSASFGSLVIDRAAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVW-E 180 Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 D + +V++ + +LR K+ + + + R +GY +D Sbjct: 181 HDYLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRLD 222 >gi|194015722|ref|ZP_03054338.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Bacillus pumilus ATCC 7061] gi|194013126|gb|EDW22692.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Bacillus pumilus ATCC 7061] Length = 228 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 45/224 (20%), Positives = 92/224 (41%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + G + ++ D+ ++ Sbjct: 7 ILIVDDEFDMLELIGSFLKRQGFHIITASNGMDALRQLEKEPVDLVVLDIM--MPDMDGF 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118 E+ + IR SQ+P++ ++ + + + G DD + KP RE + R Sbjct: 65 EVCQRIRQTSQIPILFLTARSYEEDRIRGLEIGADDYIMKPFSLRELAARIETTLRRIRG 124 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 L + +R + G I + DGR + E L RRE +L +L+ N+G+ ++ Q++ ++ Sbjct: 125 LSLKRSRIQFGDIEIDQDGRQVYIHQEPINLTRREFDLLMFLLLNQGQVFSREQLYQKLW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + V++HI LR KL K + + +GY + Sbjct: 185 ESHSTSGSLRTVDTHIKTLRLKL--KGAERHIKTVWGVGYKFEE 226 >gi|154505270|ref|ZP_02042008.1| hypothetical protein RUMGNA_02784 [Ruminococcus gnavus ATCC 29149] gi|153794468|gb|EDN76888.1| hypothetical protein RUMGNA_02784 [Ruminococcus gnavus ATCC 29149] Length = 230 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 46/227 (20%), Positives = 88/227 (38%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + D G +E N E D+ ++ L G Sbjct: 5 ILIVEDEESIADLERDYLELSGFQVEVANDGETGLNKAMKEEFDLIILDLML--PGVDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R+ P+I +S + G DD + KP E++ARV A R + Sbjct: 63 EICREVRSQKNTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLSRYER 122 Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N+ E +++ + R V GE +E +L +L + K ++F Sbjct: 123 LIGSNVEENDVIEIRGLKIDTTARRVWVNGEERSFTTKEFDLLTFLAGHPNHVYTKEELF 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 I+ + + + V HI K+R+K+ + +++ +GY Sbjct: 183 REIWDM-ESVGDIATVTVHIKKIREKIEYDTSHPQYIETIWGVGYRF 228 >gi|324324273|gb|ADY19533.1| DNA-binding response regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 233 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 45/230 (19%), Positives = 89/230 (38%), Gaps = 11/230 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ ++G + E L + ++ + Sbjct: 6 ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIM--MPKVDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + +R ++P+I +S + +G DD V KP + E++AR+ + RR Sbjct: 64 HMCMKVREEKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMK 123 Query: 122 SNNRAETG-------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N + +++ V+GE L RE ILE L N G + QI+ Sbjct: 124 MNGFSIQNEDELEIGEMKINISTHKVIVEGEEVKLTPREFSILELLARNPGMVFSAEQIY 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDWN 223 ++ +N V HI K+R+K+ + + +GY I+ + Sbjct: 184 EKVWNERSFQ-SDNTVMVHIRKVREKIEENPRKPIYIKTVWGVGYKIEKD 232 >gi|227872060|ref|ZP_03990437.1| response regulator [Oribacterium sinus F0268] gi|227842091|gb|EEJ52344.1| response regulator [Oribacterium sinus F0268] Length = 233 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 45/231 (19%), Positives = 80/231 (34%), Gaps = 13/231 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + DG + + E + S + ++ G L Sbjct: 6 ILVVDDEKEIAELVEIYLVSDGYKVFKAYNAEEGLQILSQEEIHLVLLDVM--MPGMNGL 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH---------REILARV 112 E+ R IR S +P+I +S + G DD V KP + + Sbjct: 64 EMCRKIRESSNIPVIMLSAKSEDLDKIVGLTGGADDYVTKPFNPLELTARVKSQLRRYTQ 123 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 NN + + D + E L E IL L ++ GK + + Sbjct: 124 LNPNAGPNYVNNEIHIRNMLINKDNHKVLIDDEDIKLTPIEFDILFLLASHPGKVFSTDE 183 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDW 222 IF ++ N V HI +LR K+ ++ + + +GY I+ Sbjct: 184 IFEKVWNEKVYEAN-NTVMVHIRRLRGKMKEDQREDKIITTVWGVGYKIEK 233 >gi|239916951|ref|YP_002956509.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Micrococcus luteus NCTC 2665] gi|281414591|ref|ZP_06246333.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Micrococcus luteus NCTC 2665] gi|239838158|gb|ACS29955.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Micrococcus luteus NCTC 2665] Length = 236 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 48/224 (21%), Positives = 96/224 (42%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ G + + + D++ ++ L Sbjct: 10 LLVVDDEPNIRELLSTSLRYAGFEVTAAANGREALDAAEEFQPDLAVLDVML--PDMDGF 67 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R +R A P++ ++ + + G DD V KP E++AR+ A+ RR Sbjct: 68 TVTRRLRSAGRHFPVVFLTARDGTEDKITGLTVGGDDYVTKPFSLDEVVARIRAVLRRTA 127 Query: 121 VSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 ++ + + D + GEV L E ++L YLM N + ++K QI Sbjct: 128 SLDDDDAAVLRVDDLELDDDAHEVRRGGEVVELSPTEFKLLRYLMMNPNRVLSKAQILDH 187 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +D + ++VES+IS LR+K+ + +KR +GY + Sbjct: 188 VW-EYDFNGDASIVESYISYLRRKIDVGGHEKMIHTKRGVGYML 230 >gi|315658044|ref|ZP_07910917.1| response regulator [Staphylococcus lugdunensis M23590] gi|315496934|gb|EFU85256.1| response regulator [Staphylococcus lugdunensis M23590] Length = 249 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 48/231 (20%), Positives = 97/231 (41%), Gaps = 14/231 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + G +E E + D+ ++ L + + Sbjct: 18 ILVVDDEQSIVTLLKYNLETAGYIVEVAYDGEEALEKVEKVQPDLIVLDVML--PKKDGI 75 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ + IR+ VP++ ++ + + G DD + KP RE++ARV AI RR + Sbjct: 76 EVCKTIRSDKNLVPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRRSQ 135 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPL---------PRRERRILEYLMANRGKRVAKT 171 N A + ++ E F + +E +L YL+ +G+ + + Sbjct: 136 FVNEAANDAANEEDILIENIRIRPEFFEVYKDDELLELTPKEFELLLYLIERQGRVITRE 195 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + ++++ ++ A + +V+ HIS LR KL + + R LGY ++ Sbjct: 196 HMLNSVW-NYEFAGDSRIVDVHISHLRDKLEENPKQPKLIKTVRGLGYKLE 245 >gi|119715669|ref|YP_922634.1| response regulator receiver [Nocardioides sp. JS614] gi|119536330|gb|ABL80947.1| response regulator receiver [Nocardioides sp. JS614] Length = 248 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 46/220 (20%), Positives = 89/220 (40%), Gaps = 5/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A + + + +G + R D+ ++ L G+ + Sbjct: 28 ILVVDDDASLAEMLTIVLRQEGFESHMVARGDLAMEAFREYRPDLVLLDLML--PGKDGI 85 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + IRA S VP++ ++ + +SG DD V KP +E++AR+ A RR Sbjct: 86 DVCKEIRAESGVPIVMLTAKGDTVDVVVGLESGADDYVVKPFKPKELVARIRARVRRFDA 145 Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 T + G GE L E +L L + + + ++G Sbjct: 146 PAQETLTIGDLTIDVAGHAVTRAGERISLTPLEFDLLVCLARKPWQVFTREVLLEQVWG- 204 Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219 + A + +V H+ +LR K+ + + V + R +GY Sbjct: 205 YRHAADTRLVNVHVQRLRSKVEHDPENPEIVVTVRGVGYK 244 >gi|226315382|ref|YP_002775278.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226098332|dbj|BAH46774.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 233 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 54/229 (23%), Positives = 86/229 (37%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD A + + +G + + D++ ++ G Sbjct: 6 ILIADDEAEIAELVALHVKKEGYHTIIAADGKAALQAVQTHSIDLAILDIM--MPGLDGY 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R+IR +P+I +S S + G DD + KP + E++ARV A RR K Sbjct: 64 EVTRLIREQHNMPIIFLSAKTSDLDKISGLVMGADDYMTKPFNPMELVARVNAQLRRFKQ 123 Query: 122 SNNRAETGPIR---------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 N A ++ + R + GE L +E IL L K + Sbjct: 124 LNQPAVAVASNKVLEAGGLVIYPEERTVSLYGETIELTPKEFDILYLLARYPKKVFSADN 183 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220 IF ++G N V HI LRKKL K + + +GYS Sbjct: 184 IFEMVWGEAYYEG-SNTVMVHIRTLRKKLGEEKTKNKWIKTVWGVGYSF 231 >gi|205352249|ref|YP_002226050.1| transcriptional regulator YedW [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205272030|emb|CAR36874.1| response regulator [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326627294|gb|EGE33637.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 248 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 47/219 (21%), Positives = 93/219 (42%), Gaps = 3/219 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D + + G ++ L + ++ L G Sbjct: 25 ILLIEDNQKTIEWVRRGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIML--PGLDGW 82 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R +R Q P+I ++ S++ + ++G +D + KP E+LARV A R+ Sbjct: 83 QVLRALRTAHQSPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHVP 142 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 R + + + + G+ L R+E +L L + G+ V +T I S ++G+ Sbjct: 143 VFTRLTINGLDMDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWGI- 201 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + E N V+ I +LR K+ + + + R +GY + Sbjct: 202 NFDSETNTVDVAIRRLRAKVDDPFEKKLIMTVRGMGYRL 240 >gi|18202894|sp|Q9F868|REGX3_MYCS2 RecName: Full=Sensory transduction protein regX3 gi|9964001|gb|AAG09797.1|AF258346_2 response regulator RegX3 [Mycobacterium smegmatis str. MC2 155] Length = 228 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 53/226 (23%), Positives = 101/226 (44%), Gaps = 10/226 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + D L +G + D+ ++ L G + Sbjct: 5 LIVEDEESLADPLAFLLRKEGFEATVVGDGPSALAEFERSGADIVLLDLML--PGMSGTD 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + +RA S VP+I ++ S + + G DD V KP RE++AR+ A+ RR + Sbjct: 63 VCKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGADN 122 Query: 123 NNRAETG------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 ++ P+R+ + V GE LP +E +LEYLM N G+ + + Q+ Sbjct: 123 DDAGADDGVLEAGPVRMDVERHVVSVNGEPITLPLKEFDLLEYLMRNSGRVLTRGQLIDR 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221 ++G D + ++ H+ +LR K+ + + + R LGY ++ Sbjct: 183 VWGA-DYVGDTKTLDVHVKRLRSKIEEDPANPVHLVTVRGLGYKLE 227 >gi|121996908|ref|YP_001001695.1| two component transcriptional regulator [Halorhodospira halophila SL1] gi|121588313|gb|ABM60893.1| two component transcriptional regulator, winged helix family [Halorhodospira halophila SL1] Length = 229 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 54/222 (24%), Positives = 88/222 (39%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++++D V++ I G + D+ ++ L G + Sbjct: 5 ILVVEDDPAVREMLITSLERQGFEVIPAVDAMQGSEQLRQRPPDLILLDWMLPQVSGVEW 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + Q+P+I ++ + + FDSGVDD V KP RE+ ARV A+ RR Sbjct: 65 ARELKEDDQTRQIPIILLTARGEEEDKVRGFDSGVDDYVTKPFSPRELAARVKAVLRRTA 124 Query: 121 VSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 S R+ G+ L E R+L + MA+ + +TQ+ ++ Sbjct: 125 PSTADTPLEAAGLRLDPVSHRVTGHGQSLELGPTEYRLLRFFMAHPDRVFTRTQLLDQVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G + VEE V+ HI +LRK L V + R GY Sbjct: 185 GT-NVYVEERTVDVHIRRLRKILATTGHDGLVQTVRGAGYRF 225 >gi|329928026|ref|ZP_08282030.1| heme response regulator HssR [Paenibacillus sp. HGF5] gi|328938130|gb|EGG34527.1| heme response regulator HssR [Paenibacillus sp. HGF5] Length = 226 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 43/222 (19%), Positives = 101/222 (45%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +++DD +++ + G+ + + + D+ ++ Sbjct: 4 ILVVDDDPNIRELIKVFLEEAGMEEVMEASDGVEALSVMEQVSVDLVVMDIM--MPNMDG 61 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL R IR ++ +P++ ++ + + F+ G DD + KP E++ RV A+ +R + Sbjct: 62 WELCREIRRNTGIPVLMLTAKGETRQIVKGFELGTDDYLVKPFEPAELVVRVKALLKRYQ 121 Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 V+ ++ T ++ + + EVF LP +E +L L + G + + ++ I+G Sbjct: 122 VAASQTVTIGKLQMNRRTYEVKAGEEVFTLPLKEFELLFKLASYPGSTLPRDRLIEEIWG 181 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +D E ++ H+++LR++ + + + R LGY ++ Sbjct: 182 -YDFEGNERTLDVHVNRLRERFPEEKYRFRIRTVRGLGYRLE 222 >gi|290957456|ref|YP_003488638.1| two-component system response regulator [Streptomyces scabiei 87.22] gi|260646982|emb|CBG70081.1| putative two-component system response regulator [Streptomyces scabiei 87.22] Length = 245 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 47/227 (20%), Positives = 94/227 (41%), Gaps = 15/227 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + D A +G ++ + + D+ ++ L G LE Sbjct: 22 LVVEDDPTIVDAIAARLRAEGFVVQTATDGPAAVDTAEAWQPDLLILDIML--PGFDGLE 79 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R ++A VP++ ++ L G DD + KP RE+ ARV + RR++ + Sbjct: 80 VCRRVQAQRPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRVERA 139 Query: 123 NNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 A T + R V+ E L E +L L +++ Q+ Sbjct: 140 ALAATTPRSGILRLGELEIDHAQRRVRVRSEDVHLTPTEFDLLVCLANTPRAVLSREQLL 199 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + ++ D + V+SHI LR+K+ G + + + +GY+++ Sbjct: 200 AEVWDWADASG-TRTVDSHIKALRRKI----GAERIRTVHGVGYALE 241 >gi|21225507|ref|NP_631286.1| two-component system response regulator [Streptomyces coelicolor A3(2)] gi|256783473|ref|ZP_05521904.1| two-component system response regulator [Streptomyces lividans TK24] gi|289767351|ref|ZP_06526729.1| two-component system response regulator [Streptomyces lividans TK24] gi|8546941|emb|CAB94653.1| putative two-component system response regulator [Streptomyces coelicolor A3(2)] gi|289697550|gb|EFD64979.1| two-component system response regulator [Streptomyces lividans TK24] Length = 229 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 54/225 (24%), Positives = 94/225 (41%), Gaps = 10/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++I+D V+DG G + + E S R D ++ L G LE Sbjct: 5 LIIEDDRAVRDGVRLALRRQGHEVAAAATGEDGLEQLRSFRPDAVVLDLML--PGMSGLE 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI------Y 116 + R IRAH QVP+I + + ++G DD V KP+ R + AR+ A+ Sbjct: 63 VCRRIRAHDQVPIIMATARGDDTDIVVGLEAGADDYVVKPVRARILDARIRAVLRRVGGT 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + G + + G QG L E R+L L A+ G+ ++ Q+ A Sbjct: 123 ADDQGTPRTEHHGDLVIDRAGLTVTHQGRPVALGPSELRLLLTLSASAGQVFSRQQLLEA 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220 ++ + + +V++ + +LR K+ + V + R GY Sbjct: 183 VW-EHNYHGDARLVDACVKRLRSKIGESPGSPRYVHTVRGFGYRF 226 >gi|20808060|ref|NP_623231.1| response regulator [Thermoanaerobacter tengcongensis MB4] gi|254478788|ref|ZP_05092156.1| response regulator receiver domain protein [Carboxydibrachium pacificum DSM 12653] gi|20516641|gb|AAM24835.1| Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Thermoanaerobacter tengcongensis MB4] gi|214035300|gb|EEB76006.1| response regulator receiver domain protein [Carboxydibrachium pacificum DSM 12653] Length = 240 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 39/224 (17%), Positives = 90/224 (40%), Gaps = 7/224 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61 ++I+D + + G + + + + D+ ++ L G ++ Sbjct: 6 LVIEDEIHILELLRYNLEAAGYKVMASENGKEGLEKALEEKPDLLILDLMLPDMDGLEIC 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117 ++ + +P+I ++ + + G DD + KP R I A + + Sbjct: 66 KVLKKNEDTKNIPIIMLTARSEEFDKVLGLELGADDYITKPFSVRELLARIKAVLRRTQQ 125 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + G I + + +G+ L +E +L+ L N+GK + + + + Sbjct: 126 VEEEKEEIIKFGDIVIDTGKHVVYKKGKALDLTLKEFELLKLLSQNKGKVLTRDYLLDKV 185 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 +G ++ A E V+ HI LRKK+ + +++ R +GY + Sbjct: 186 WG-YEYAGETRTVDVHIRHLRKKIEDDDKAPVYIETVRGIGYKL 228 >gi|294627534|ref|ZP_06706117.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292598165|gb|EFF42319.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 227 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 54/219 (24%), Positives = 95/219 (43%), Gaps = 3/219 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + G S + + + D+ ++ L +G L+ Sbjct: 11 LIVEDEPRLAAVLGEYLHAAGYSHDWIADGAQALGAFRAQQPDLVLLDLMLPNRG--GLD 68 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +R S VP+I ++ L + G DD + KP RE++ARV A+ RR + Sbjct: 69 ICRDLRKESAVPVIMVTARVEEIDRLLGLEIGADDYICKPFSPREVVARVQAVLRRHRHD 128 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 + A +++ D V G L + E R+L L A G+ ++ Q+ +Y Sbjct: 129 PHGAPAPGLQIDEDTCRASVDGRTLDLTQVEFRLLRTLAAAPGRVYSREQLMGRLY-ADH 187 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 V + V+SH+ LR+KL + G D V S GY + Sbjct: 188 RIVTDRTVDSHVKNLRRKLADAGGEDWVRSVYGAGYRFE 226 >gi|28210522|ref|NP_781466.1| two-component response regulator [Clostridium tetani E88] gi|28202959|gb|AAO35403.1| two-component response regulator [Clostridium tetani E88] Length = 233 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 40/230 (17%), Positives = 88/230 (38%), Gaps = 12/230 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++D ++G + + L + D+ ++ + Sbjct: 6 IIVVDDEKEIRDLICIYLENEGYRVIKAENGIKALELLEKEKVDLIILDIM--MPNMDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH--------REILARVA 113 E IR +P+I +S + +G DD + KP + ++ Sbjct: 64 EACTKIREEKNMPIIMLSAKTEDMDKIWGLTAGADDYMTKPFNPLELIARVKSQLRRYKK 123 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + ++++ E + + + + +V + L RE ILE L N+G + +I Sbjct: 124 FNVQNGYINDDIIEIDELTINTATHEVQVGEKKVRLTPREFDILELLARNKGIVFSIEKI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 + ++ + +N V HI KLR+K+ V + +GY ++ Sbjct: 184 YERVW-KEEFFKSDNTVMVHIRKLREKIEENPRKPKYVKTVWGVGYKVEK 232 >gi|255283546|ref|ZP_05348101.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Bryantella formatexigens DSM 14469] gi|255265808|gb|EET59013.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Bryantella formatexigens DSM 14469] Length = 223 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 45/224 (20%), Positives = 87/224 (38%), Gaps = 9/224 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++ + G S+ S D+ ++ L Sbjct: 4 ILIVEDDISIQALLHDFIQEAGHSVVLAADGVEALAKYSEQTFDLVLLDIML--PKIDGY 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR---EILARVAAIYRR 118 + +IR S VP+I ++ + + + D DD + KP +A V R Sbjct: 62 GVCEVIRQKSNVPIIMLTALDNEENQIKGLDLQADDYITKPFSMPVLLRKIAAVLRRSSR 121 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + DG E L RE IL L+ ++G+ + + + ++ Sbjct: 122 QDDVPQTINYKDLTLDLDGYKVYNGQESVDLTPREFEILRELLTHKGRILTRQNLLQTLW 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 ++ EE ++++HI LRKKL D +++ R +GY ID Sbjct: 182 -KYEFFGEERIIDTHIKNLRKKLGTA---DYIETIRGVGYRIDK 221 >gi|160938310|ref|ZP_02085665.1| hypothetical protein CLOBOL_03206 [Clostridium bolteae ATCC BAA-613] gi|158438683|gb|EDP16440.1| hypothetical protein CLOBOL_03206 [Clostridium bolteae ATCC BAA-613] Length = 235 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 47/229 (20%), Positives = 93/229 (40%), Gaps = 13/229 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD L+ G DG+ ++ E L D+ ++ L E Sbjct: 5 LVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEAIELAKKTEYDIVLLDVML--PKYDGYE 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + IR S +P+I ++ + + G DD ++KP + E+ AR+ AI RR S Sbjct: 63 VCQAIREFSDMPIIMLTAKGGDMDKILGLEYGADDYISKPFNILEVKARIKAIIRRSGKS 122 Query: 123 NNRAETGPI---------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + ++ ++ R + L +E +LE L+ N K ++ + Sbjct: 123 KRQKREEAESGVIGAGDLKMDTESRRVFIGEREINLTAKEFDLLELLVRNPNKVYSREAL 182 Query: 174 FSAIYGLFDEA-VEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + ++G + V+ H+ +LR+K+ V +K +GY Sbjct: 183 LTYVWGNKAMDSGDVRTVDVHVRRLREKIEPSPSDPRYVHTKWGVGYYF 231 >gi|78183890|ref|YP_376324.1| two component transcriptional regulator [Synechococcus sp. CC9902] gi|116071497|ref|ZP_01468765.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. BL107] gi|78168184|gb|ABB25281.1| two component transcriptional regulator, winged helix family [Synechococcus sp. CC9902] gi|116065120|gb|EAU70878.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. BL107] Length = 248 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 95/228 (41%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++ G ++ L + D+ ++ Sbjct: 11 ILVVDDEASIRRILETRLSMIGYNVVTACDGTEALELFPNCMPDLVVLDVM--MPKLDGY 68 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 + + +R S VP++ ++ + + + G DD V KP +E+ AR+ + RR++ Sbjct: 69 GVCQELRKESDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRVEK 128 Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 ++ + +R+ ++ R E L E +LE L++ G+ + +I Sbjct: 129 EAIAGIPNSGVIQVSDLRIDTNKRQVFRNDERIRLTGMEFSLLELLVSRSGEPFNRGEIL 188 Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 ++G + V+ VV+ HIS+LR KL + + + + R GY Sbjct: 189 KEVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGYLF 236 >gi|238799012|ref|ZP_04642473.1| Transcriptional regulatory protein baeR [Yersinia mollaretii ATCC 43969] gi|238717153|gb|EEQ09008.1| Transcriptional regulatory protein baeR [Yersinia mollaretii ATCC 43969] Length = 241 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 45/221 (20%), Positives = 86/221 (38%), Gaps = 5/221 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + + G + + A + ++ L G + Sbjct: 17 LIVEDEPKLGQLLVDYLQAAGYRTQWITNGVEVVAAVRQAPPAIILLDLML--PGSDGIT 74 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR S VP++ ++ L + G DD + KP RE++ARV I RR Sbjct: 75 ICREIRRFSDVPIMMVTAKTEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCHQQ 134 Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + QG + L E R+L+ L G ++ Q+ + +Y + Sbjct: 135 REQPSESAPLLIDESRFQASYQGHLLELTPAEFRLLKILATQPGHVFSREQLLNNLYDDY 194 Query: 182 DEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 V + ++SHI LR+KL + + + +GY + Sbjct: 195 -RVVTDRTIDSHIKNLRRKLESLDGEKPFIRAVYGMGYRWE 234 >gi|94972307|ref|YP_594347.1| two component transcriptional regulator [Deinococcus geothermalis DSM 11300] gi|94554358|gb|ABF44273.1| two component transcriptional regulator, winged helix family [Deinococcus geothermalis DSM 11300] Length = 248 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 42/222 (18%), Positives = 84/222 (37%), Gaps = 7/222 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D A V+D + G + ++ + R D+ ++ G LE Sbjct: 26 LIVEDNAGVRDMIREYLEEHGYRVRVASNGQEGLLEARHHRPDLVLLDVM--MPGMDGLE 83 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRLK 120 R RA QVP+I ++ + + + G DD V KP E+ R Sbjct: 84 FLRRFRATEQVPVIFLTARDTELDKVLGLELGADDYVTKPFSMAELLARVRANLRRSSEP 143 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + N G + + R V+GE L R E ++ + G+ + ++ Sbjct: 144 LPNAVLRAGELELDPTTRTFLVRGERVDLTRSEFELMSAFLRAPGRVFTRLELLEQ--LQ 201 Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 + E ++ H+ LR K+ +++ +GY ++ Sbjct: 202 EEALGSERTIDVHVRNLRAKIEAEPGKPRLIETVFGVGYRLN 243 >gi|294139921|ref|YP_003555899.1| phosphate regulon response regulator PhoB [Shewanella violacea DSS12] gi|293326390|dbj|BAJ01121.1| phosphate regulon response regulator PhoB [Shewanella violacea DSS12] Length = 229 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 35/224 (15%), Positives = 86/224 (38%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +++ + G + + + S D+ ++ G + Sbjct: 5 ILIVEDESAIREMLAFVLDQHGFNTTSAEDFDSAINMISEPYPDLILLDWM--FPGGSGI 62 Query: 62 ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIY 116 +L + +R Q+P+I ++ + + + G DD + KP +E+ + Sbjct: 63 QLAKRLRQDEFTRQIPIIMLTARGEEEDKVRGLEVGADDYMTKPFSPKELVARIKAVLRR 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + + V +V + E R+L + M + + ++ Q+ Sbjct: 123 SSPTSLEEPIDVQGLMLDPVSHRVTVGDQVLEMGPTEFRLLHFFMTHPERVYSREQLLDN 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + VE+ V+ HI +LRK + + + R GY Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKAIEPSEHDRLIQTVRGAGYRF 225 >gi|289578661|ref|YP_003477288.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter italicus Ab9] gi|297544881|ref|YP_003677183.1| winged helix family two component transcriptional regulator [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|289528374|gb|ADD02726.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter italicus Ab9] gi|296842656|gb|ADH61172.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 234 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 40/224 (17%), Positives = 89/224 (39%), Gaps = 7/224 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVL 61 ++I+D + + G + + + + D+ ++ L G ++ Sbjct: 6 LVIEDEVHILELLRYNLEAAGYKVITSENGKEGLDKALEEKPDLVILDLMLPDVDGLEIC 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117 ++ + +P+I ++ + + G DD + KP R I A + + Sbjct: 66 KILKKNDETKNIPIIMLTAKSEEFDKVLGLELGADDYITKPFSVRELLARIKAVLRRTQQ 125 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + G I + + +G+V L +E +L+ L N GK + + + + Sbjct: 126 PEEEKEEIIRFGDIVIDTGKHLVYKKGKVLDLTLKEFELLKLLSQNMGKVLTRDYLLDKV 185 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 +G ++ A E V+ HI LRKK+ + +++ R +GY + Sbjct: 186 WG-YEYAGETRTVDVHIRHLRKKIEDDDKSPVYIETVRGIGYKL 228 >gi|183601907|ref|ZP_02963276.1| response regulator of two-component system [Bifidobacterium animalis subsp. lactis HN019] gi|219682821|ref|YP_002469204.1| response regulator of two-component system [Bifidobacterium animalis subsp. lactis AD011] gi|241190397|ref|YP_002967791.1| two-component system response regulator [Bifidobacterium animalis subsp. lactis Bl-04] gi|241195803|ref|YP_002969358.1| two-component system response regulator [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183218792|gb|EDT89434.1| response regulator of two-component system [Bifidobacterium animalis subsp. lactis HN019] gi|219620471|gb|ACL28628.1| response regulator of two-component system [Bifidobacterium animalis subsp. lactis AD011] gi|240248789|gb|ACS45729.1| response regulator of two-component system [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250357|gb|ACS47296.1| response regulator of two-component system [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295793384|gb|ADG32919.1| response regulator of two-component system [Bifidobacterium animalis subsp. lactis V9] Length = 235 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 50/229 (21%), Positives = 95/229 (41%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D D + +G G + E L D+ ++ L G Sbjct: 4 ILVVEDEPSYLDPLLYQLTREGYEAHGAATGEEAWELYEEMEFDLVLLDLML--PGISGT 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-------- 113 L R + +VP+I ++ + + + G DD V KP RE+LAR+ Sbjct: 62 TLCRRMHELRRVPIIMVTAKSTENDVIVGLEIGADDYVTKPYSFRELLARIHAVLRRSLE 121 Query: 114 -AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 ++ GPI + + + GE+ P +E +LEYLM N+G+ + + Q Sbjct: 122 PRASGTPGGNDETLTCGPIEMSVASHEVRIHGELTQFPLKEFEVLEYLMRNKGRVLTRQQ 181 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + ++G D + ++ H+ ++R K+ + + + R LGY I Sbjct: 182 LIGRVWG-SDYVGDTKTLDVHVKRIRAKIEADPSNPALLTTVRGLGYRI 229 >gi|90023478|ref|YP_529305.1| response regulator receiver domain-containing protein [Saccharophagus degradans 2-40] gi|89953078|gb|ABD83093.1| Phosphate regulon transcriptional regulatory protein phoB [Saccharophagus degradans 2-40] Length = 234 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 42/222 (18%), Positives = 88/222 (39%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +++DD ++D ++ + L + D+ ++ L G G ++ Sbjct: 6 ILVVDDEPPIRDMLRVALEMAEYAVLEAGDAQQAHSLIVDKKPDLILLDWMLPGTSGIEL 65 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + S++P+I ++ + + G DD + KP RE++AR+ A+ RR Sbjct: 66 ARRLKRDEVTSEIPIIMLTAKGEEDNKVQGLEVGADDYITKPFSPRELVARLKAVLRRTD 125 Query: 121 VSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + + E R+LE+ + ++ + + Q+ ++ Sbjct: 126 SMGISEPIQVEGLCLDPISHRVTISDMPVQMGPTEYRLLEFFLTHQERVYTRNQLLDHVW 185 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G + VEE V+ HI +LRK L + + + R GY Sbjct: 186 G-GNVYVEERTVDVHIRRLRKALSLEGHDRFIQTVRGAGYRF 226 >gi|6689352|emb|CAB65451.1| VicR protein [Streptococcus pyogenes] Length = 239 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 49/232 (21%), Positives = 97/232 (41%), Gaps = 16/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + + + D+ ++ L L Sbjct: 7 ILIVDDEKPISDIIKFNLTKEGYDIVTAFDGREAVTIFEEEKPDLIILDLML--PELDGL 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IR S VP+I +S S + + G DD V KP +RE+LARV A RR + Sbjct: 65 EVAKEIRKTSHVPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTET 124 Query: 122 SN------------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 G +++ D + G+ L RE +L +L + G+ + Sbjct: 125 IETAVAEENASSGTQELTIGNLQILPDAFVAKKHGQEVELTHREFELLHHLANHMGQVMT 184 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + + ++G +D + V+ + +LR+K+ + + + ++R +GY + Sbjct: 185 REHLLEIVWG-YDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYM 235 >gi|311032226|ref|ZP_07710316.1| two-component response regulator WalR [Bacillus sp. m3-13] Length = 233 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 47/226 (20%), Positives = 95/226 (42%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + E R D+ ++ L + + Sbjct: 5 ILVVDDEKPIADILKFNLQKEGYEVYCAYDGEEAVNKVEEVRPDLILLDIMLPQR--DGM 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R ++P+I ++ S + + G DD V KP RE++ARV A RR + Sbjct: 63 EVCREVRKKYEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHQQ 122 Query: 122 SNNRAETGPIR------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 E + D +G++ L RE +L YL + G+ + + + Sbjct: 123 KAADTEEPSEIAIGSLVIHPDAYMVTKRGDMIELTHREFELLHYLAKHIGQVMTREHLLQ 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++G +D + V+ + +LR+K+ + + ++R +GY + Sbjct: 183 TVWG-YDYYGDVRTVDVTVRRLREKIEDNPSHPTWIVTRRGVGYYL 227 >gi|261406531|ref|YP_003242772.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|329926951|ref|ZP_08281351.1| putative transcriptional regulatory protein ResD [Paenibacillus sp. HGF5] gi|261282994|gb|ACX64965.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] gi|328938781|gb|EGG35157.1| putative transcriptional regulatory protein ResD [Paenibacillus sp. HGF5] Length = 231 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 41/228 (17%), Positives = 93/228 (40%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + F +G +++ ++ + L + + ++ L G Sbjct: 5 ILIIEDETTIAQLERDYFELNGFAVDLCHTGDEGLKLALNEDYSLIIVDLQL--PGMNGY 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR--------EILARVA 113 EL IR + +VP++ +S + F+ G DD + KP ++ V Sbjct: 63 ELCSHIRKNKEVPILIVSAKNEEIDKIRAFNLGADDYITKPFSPSELVARAKAHLMRYVR 122 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + ++ ++ + + R V+ + RE +LE+L ++ + K ++ Sbjct: 123 LLGKQSPSPSSEIHIRGLVIDKTARRVFVRNQEVAFTTREFNLLEFLASHPNRVFNKHEL 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 F I+G+ D + + V H+ KLR+K+ + +++ GY Sbjct: 183 FERIWGM-DSSGDIATVTVHVRKLREKMELDPSNPQYIETVWGAGYRF 229 >gi|52082613|ref|YP_081404.1| putative two-component response regulator YycF [Bacillus licheniformis ATCC 14580] gi|52788011|ref|YP_093840.1| YycF [Bacillus licheniformis ATCC 14580] gi|319648478|ref|ZP_08002694.1| transcriptional regulatory protein yycF [Bacillus sp. BT1B_CT2] gi|52005824|gb|AAU25766.1| putative two-component response regulator YycF [Bacillus licheniformis ATCC 14580] gi|52350513|gb|AAU43147.1| YycF [Bacillus licheniformis ATCC 14580] gi|317389557|gb|EFV70368.1| transcriptional regulatory protein yycF [Bacillus sp. BT1B_CT2] Length = 235 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 49/228 (21%), Positives = 96/228 (42%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + + D+ ++ L + + Sbjct: 5 ILVVDDEKPIADILEFNLKKEGYEVHCAYDGNEALQMVEDLNPDMILLDIML--PNKDGV 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R +P+I ++ S + + G DD V KP RE+LARV A RR Sbjct: 63 EVCREVRKKYDMPIIMLTAKDSEIDKVIGLELGADDYVTKPFSTRELLARVKANLRRQNT 122 Query: 122 --------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 S+N + G + +F D + E L RE +L YL + G+ + + + Sbjct: 123 AAPAEEESSSNEIQIGSLVIFPDAYVVSKRDETIELTHREFELLHYLAKHIGQVMTREHL 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++G +D + V+ + +LR+K+ + + ++R +GY + Sbjct: 183 LQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPSWIVTRRGVGYYL 229 >gi|309390021|gb|ADO77901.1| two component transcriptional regulator, winged helix family [Halanaerobium praevalens DSM 2228] Length = 229 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 99/228 (43%), Gaps = 15/228 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++++D +++ + G + + + + D+ ++ L G +V Sbjct: 4 ILVVEDEKNIRELIKFNLENAGYEVLTAENGKIALNSLEAE-IDLVVLDLMLPEVDGMEV 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 R + Q+P+I ++ + + G DD + KP RE++AR+ AI+RR+K Sbjct: 63 CRQMRANKKLRQIPIIMLTAKGEEIERILGLEMGADDYMTKPFSPRELVARIKAIFRRIK 122 Query: 121 VSNNRAETGPIRV--------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 E ++ + + E L +E +L YL+ N+G+ +++ Sbjct: 123 ELKVDQEKIKDKIISAGKLKLDIPRHEVFLGTEKIILTPKEFELLRYLVINQGRVLSRDL 182 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + I+G ++ A + V+ HI +LR+K++ + + R +GY Sbjct: 183 LLEKIWG-YEYAGDTRTVDVHIRRLRQKIKADQ----IVTVRGVGYKF 225 >gi|297192480|ref|ZP_06909878.1| transcriptional regulatory protein afsQ1 [Streptomyces pristinaespiralis ATCC 25486] gi|297151373|gb|EFH31120.1| transcriptional regulatory protein afsQ1 [Streptomyces pristinaespiralis ATCC 25486] Length = 228 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 49/223 (21%), Positives = 93/223 (41%), Gaps = 5/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D ++ G + + E L R D+ ++ L G Sbjct: 7 LLLIEDDDAIRTALELSLSRQGHRVATAATGEDGLKLLREQRPDLIVLDVML--PGIDGF 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR Q+P+I ++ + +SG DD V KP+ R + AR+ A+ RR + Sbjct: 65 EVCRRIRRTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGER 124 Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + T + GE L E R+L L G+ +++ Q+ ++ Sbjct: 125 ESTDSATFGSLVIDRSAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVW-E 183 Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDW 222 D + +V++ + +LR K+ + + + R +GY +D Sbjct: 184 HDYLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRLDV 226 >gi|289705441|ref|ZP_06501835.1| response regulator receiver domain protein [Micrococcus luteus SK58] gi|289557826|gb|EFD51123.1| response regulator receiver domain protein [Micrococcus luteus SK58] Length = 235 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 49/223 (21%), Positives = 96/223 (43%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ G + + + D++ ++ L Sbjct: 10 LLVVDDEPNIRELLSTSLRYAGFEVTAAANGREALDAAEEFQPDLAVLDVML--PDMDGF 67 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R +R A P++ ++ + + G DD V KP E++AR+ A+ RR Sbjct: 68 TVTRRLRAAGRHFPVVFLTARDGTEDKITGLTVGGDDYVTKPFSLDEVVARIRAVLRRTA 127 Query: 121 VSNNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 ++ A + D + GEV L E ++L YLM N + ++K QI + Sbjct: 128 SLDDDAAVLRVDDLELDDDAHEVRRGGEVVELSPTEFKLLRYLMMNPNRVLSKAQILDHV 187 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + +D + ++VES+IS LR+K+ + +KR +GY + Sbjct: 188 W-EYDFNGDASIVESYISYLRRKIDVGGREKMIHTKRGVGYML 229 >gi|86739186|ref|YP_479586.1| two component transcriptional regulator [Frankia sp. CcI3] gi|86566048|gb|ABD09857.1| two component transcriptional regulator, winged helix family [Frankia sp. CcI3] Length = 226 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 49/225 (21%), Positives = 93/225 (41%), Gaps = 8/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D D + +G + D+ ++ L G Sbjct: 4 LLVVEDEESFSDALSFMLEREGFEVGVVADGPSALAEFDRRGADLVLLDLML--PGLSGT 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R S VP+I ++ S + + G DD V KP RE++AR+ A+ RR Sbjct: 62 EVCRTLRTRSTVPIIMLTARDSEIDKVLGLELGADDYVTKPFSARELVARIRAVLRRRSE 121 Query: 122 SNNRAETG----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + P+R+ + V G LP +E +LE + N G+ + + Q+ + Sbjct: 122 NEEVGDATLEAGPVRMDVERHVVTVDGTTVTLPLKEFELLEMFLRNAGRVLTRGQLIDRV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 +G D + ++ H+ +LR K+ + + R LGY + Sbjct: 182 WG-SDYVGDTKTLDVHVKRLRTKIEHEPGNPRHLVTVRGLGYKFE 225 >gi|163943242|ref|YP_001642472.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163865439|gb|ABY46497.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] Length = 236 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 41/231 (17%), Positives = 89/231 (38%), Gaps = 12/231 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D +++ + + + + + + D+ ++ + Sbjct: 4 ILIVEDEENIREVCKRYLEREEYEVYTAVNGTEGWDVFLTHQPDLIILDLM--MPKKDGW 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL IR S VP+I ++ + + G DD + KP RE++ RV I RR Sbjct: 62 ELCGEIRQQSNVPIIMLTAKGEERDRILGLTMGADDYLTKPFSPRELVLRVQIILRRGNQ 121 Query: 122 SNNR--------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + E ++++ R V L +E +L + + + +++Q+ Sbjct: 122 VAIQAKESLSEVIEFPDLKIYPKTRCVLVCENEVELTVKEFEVLYVMAKHPKQVFSRSQL 181 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDWN 223 I+ F N V +S+LR+KL + + + +GY + N Sbjct: 182 LELIWD-FGHEGASNTVTVLVSRLREKLEKHTIKNHWIHTVWGIGYRFEPN 231 >gi|85711170|ref|ZP_01042230.1| Positive response regulator for pho regulon (CheY-wHTH) [Idiomarina baltica OS145] gi|85695083|gb|EAQ33021.1| Positive response regulator for pho regulon (CheY-wHTH) [Idiomarina baltica OS145] Length = 228 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 36/224 (16%), Positives = 87/224 (38%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A +++ + G + + D+ ++ L G + Sbjct: 5 ILIVEDEAPIREMLSFVMEQHGYQAVEAKDYDSGLAKIAEPYPDMVLLDWML--PGGSGI 62 Query: 62 ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL--ARVAAIY 116 +L + I++ +P+I ++ + + + G DD + KP +E++ R Sbjct: 63 QLAKKIKSDDFTRNIPIIMLTARGEEEDKVRGLEVGADDYITKPFSPKELMARMRAVFRR 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 V + E +++ + E ++L + M + + ++ Q+ Sbjct: 123 VAPTVLDEPLEIEGLKLDPVSHRISTHDRSIDMGPTEFKLLHFFMTHPERVYSREQLLDQ 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + VE+ V+ HI +LRK L + + R +GY Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALHEHGYDRLIQTVRGVGYRF 225 >gi|219668265|ref|YP_002458700.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219538525|gb|ACL20264.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 226 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 52/221 (23%), Positives = 98/221 (44%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + G +G ++ L + R D+ ++ L Sbjct: 5 ILIIEDEEKIARFVELELGYEGYTVTKAFDGRTGLELAETGRFDLILLDVML--PKLNGT 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR S VP+I ++ S+ + DSG +D + KP E+LAR+ R Sbjct: 63 EVLRRIRRTSAVPIIMLTARDSVMDKVSGLDSGANDYITKPFAIEELLARIRNALRNTAP 122 Query: 122 SNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++ + +D R ++G+ L +RE +L +L+ N+G +++ + ++G Sbjct: 123 LSSTEVLSASGLELDADRRTVTMRGKPVDLTKREFDLLHFLLKNKGIVLSRESLLENVWG 182 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 FD A + N V+ +I LR K+ + + R +GY I Sbjct: 183 -FDFAGDTNAVDVYIRFLRGKIDEVFNVKFIHTVRGVGYVI 222 >gi|331090913|ref|ZP_08339756.1| regulatory protein vanR [Lachnospiraceae bacterium 2_1_46FAA] gi|330405467|gb|EGG85000.1| regulatory protein vanR [Lachnospiraceae bacterium 2_1_46FAA] Length = 231 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 43/230 (18%), Positives = 84/230 (36%), Gaps = 13/230 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +DG + + + + + R D++ ++ L Sbjct: 5 ILIVDDEKEIADLLEVYLQNDGFEVHKYYTGKEAMDCIRTTRLDLAILDIML--PDIDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH---------REILARV 112 + + IR P+I ++ + G DD + KP + + Sbjct: 63 TICQKIREKYFYPVIMLTAKVEDADKILGLTLGADDYILKPFNPLEVLARVKTQLRRYTK 122 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + + + + + GE L E IL YL NRGK V+ + Sbjct: 123 YNQVETVVEEKEEHDIKGLVINKTTHECTLFGEKIELTPIEFSILWYLCENRGKVVSSEE 182 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 +F ++G N V +HI +LR+KL V + +GY ++ Sbjct: 183 LFEQVWGEKYYD-SNNTVMAHIGRLREKLHEPPRKPKFVKTVWGVGYKVE 231 >gi|291519643|emb|CBK74864.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Butyrivibrio fibrisolvens 16/4] Length = 232 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 46/227 (20%), Positives = 91/227 (40%), Gaps = 14/227 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD L+ G DG+ ++ + L ++ D+ ++ L E Sbjct: 6 LVVDDEKLIVKGIRFSLEQDGMEVDCAYDGQEALDLATANHYDMILLDVML--PKLDGFE 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH----------HREILARV 112 + + IR S VP++ ++ + + G DD + KP + + Sbjct: 64 VCQSIREFSTVPIVMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRASIG 123 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 A + + N E G + + R + G + L +E +L L+ N K ++ Sbjct: 124 MAAAQERREEENIIENGDLVLDKSNRRLTILGVEYNLTSKEFDMLLLLVTNPRKVFSRED 183 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218 + I+G D +E V+ H+ +LR+K+ N V +K +GY Sbjct: 184 LLHTIWGT-DYPGDERTVDVHVRRLREKIEPNPKEPKYVRTKWGVGY 229 >gi|204930785|ref|ZP_03221658.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204320244|gb|EDZ05448.1| transcriptional activator protein IrlR [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 226 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 47/219 (21%), Positives = 93/219 (42%), Gaps = 3/219 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D + + G ++ L + ++ L G Sbjct: 3 ILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIML--PGLDGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R +R Q P+I ++ S++ + ++G +D + KP E+LARV A R+ Sbjct: 61 QVLRALRTAYQPPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHVP 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 R + + + + G+ L R+E +L L + G+ V +T I S ++G+ Sbjct: 121 VFTRLTINGLDMDATKQSVLRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWGI- 179 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + E N V+ I +LR K+ + + + R +GY + Sbjct: 180 NFDSETNTVDVAIRRLRAKVDDPFENKLIMTVRGMGYRL 218 >gi|16125434|ref|NP_419998.1| DNA-binding response regulator [Caulobacter crescentus CB15] gi|221234177|ref|YP_002516613.1| two-component response regulator [Caulobacter crescentus NA1000] gi|13422504|gb|AAK23166.1| DNA-binding response regulator [Caulobacter crescentus CB15] gi|220963349|gb|ACL94705.1| two-component response regulator [Caulobacter crescentus NA1000] Length = 254 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 49/228 (21%), Positives = 87/228 (38%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++D G +E E + + D+ ++ L GE L Sbjct: 22 ILIVDDDPGIRDVVSDFLAKHGYVVETAQDGRTMEQVLARGPIDLIVLDVML--PGEDGL 79 Query: 62 ELPRIIRAHSQVPLIGI-SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R + A + P I + S + + G DD + KP + RE+LARV A+ RR + Sbjct: 80 AICRRLSATPEAPAIIMLSAMGEETDRIVGLELGADDYLPKPCNPRELLARVRAVLRRRQ 139 Query: 121 VSNNRAETGPIRVFSDGRD--------PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + G Q V L E +L + + + + Q Sbjct: 140 EPRAVDDAMGAACEFAGWRLDLVRRELRSPQSIVVNLSSGEFSLLRAFVERPQRVLTRDQ 199 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + G D + ++ IS+LR+KL + G + + + R GY Sbjct: 200 LLDLARGR-DSDAYDRAIDVQISRLRRKLDDGGGSELIRTIRSEGYMF 246 >gi|163939801|ref|YP_001644685.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|229132829|ref|ZP_04261674.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196] gi|163861998|gb|ABY43057.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] gi|228650656|gb|EEL06646.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196] Length = 225 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 39/222 (17%), Positives = 95/222 (42%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ +G + +++ I+ Sbjct: 5 ILIVDDDPHIRELVSVFLEREGFQTYEAVDGLDALRKIEEVKVEMAIIDIM--MPNMDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 +L +R + +P++ ++ + F G DD + KP E++ RV A+ +R ++ Sbjct: 63 DLCYELRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPLELVVRVKALLKRYQI 122 Query: 122 SNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + +++ + + V + LP +E +L L + G+ ++ Q+ ++G Sbjct: 123 TVSQSIQVGNVLLNRKTFEVNVGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG- 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D E ++ HI++LR+K + +L + + R LGY ++ Sbjct: 182 YDFEGNERTLDVHINRLREKFQEELSKFSIRTIRGLGYRLEV 223 >gi|291551175|emb|CBL27437.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus torques L2-14] Length = 230 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 47/227 (20%), Positives = 87/227 (38%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + D G +E N E D+ ++ L G Sbjct: 5 ILIVEDEESIADLEKDYLELSGFEVEVANDGEIGLKKGLEGEFDLIILDLML--PGVDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR+ P+I +S + G DD + KP E++ARV A R + Sbjct: 63 EICRQIRSQKNTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARYER 122 Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N E +++ R V GE +E +L +L + +K ++F Sbjct: 123 LIGSNVEQNEVIEIRGLKIDKTARRVWVNGEEKSFTTKEFDLLTFLAGHPNHVYSKEELF 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 I+ + + + V HI K+R+K+ + +++ +GY Sbjct: 183 REIWDM-ESIGDIATVTVHIKKIREKIEYDTSHPQYIETIWGVGYRF 228 >gi|307730121|ref|YP_003907345.1| winged helix family two component transcriptional regulator [Burkholderia sp. CCGE1003] gi|307584656|gb|ADN58054.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1003] Length = 225 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 41/221 (18%), Positives = 88/221 (39%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + G S++ + L DV ++ L Sbjct: 3 ILIVEDEPKTSAYLKKGLEESGFSVDLASDGAEGLLLAQEQDYDVIVLDVML--PTMDGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-HHREILARVAAIYRRLK 120 + +++RA P++ ++ + + + G DD + KP + R Sbjct: 61 AVLKVLRATHATPVLFLTARDDVNDRVRGLELGGDDYLVKPFAFVEFLARVRTLARRGPP 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + R G + + R + L RE +L+ L+ +G+ +++TQI S ++ + Sbjct: 121 RESERLAVGDLEMDIQRRRVKRGATRIDLTPREFSLLQLLVRRQGEVLSRTQIASYVWDM 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + NVVE I +LR K+ + + + R +GY I+ Sbjct: 181 -NFDSDTNVVEVAIRRLRAKIDDAFPVKLIQTVRGVGYVIE 220 >gi|227494982|ref|ZP_03925298.1| DNA-binding response regulator [Actinomyces coleocanis DSM 15436] gi|226831434|gb|EEH63817.1| DNA-binding response regulator [Actinomyces coleocanis DSM 15436] Length = 227 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 44/219 (20%), Positives = 96/219 (43%), Gaps = 5/219 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + + +G +++ +S + ++ + D+ ++ L G +E Sbjct: 6 LVVDDDTALAEMIGIVLETEGYNVDYCHSGDAALETFAATQPDLVLLDVML--PGMDGIE 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + +IR S VP++ ++ + ++G DD V KP +E++ARV A R + + Sbjct: 64 ICSLIRQKSDVPIVMLTARSDTADVVAGLEAGADDYVPKPFKPKELIARVKARLRGREET 123 Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 V G G+ L E +L L + K ++ ++ ++G + Sbjct: 124 TEEHVRLGDLVVDVSGHHVTRAGQPIQLTPLEFDLLVALGRSPWKVFSREELLETVWG-Y 182 Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219 A + +V H+ +LR K+ + + V + R +GY Sbjct: 183 RHAADTRLVNVHVQRLRAKIERDPEHPEIVITVRGVGYR 221 >gi|294631083|ref|ZP_06709643.1| DNA-binding response regulator MtrA [Streptomyces sp. e14] gi|292834416|gb|EFF92765.1| DNA-binding response regulator MtrA [Streptomyces sp. e14] Length = 225 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 50/222 (22%), Positives = 92/222 (41%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D ++ G + S E L R D+ ++ L G Sbjct: 4 LLLIEDDDAIRTALELSLTRQGHRVATAASGEDGLKLLREQRPDLIVLDVML--PGIDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR Q+P+I ++ + +SG DD V KP+ R + AR+ A+ RR + Sbjct: 62 EVCRRIRRTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGER 121 Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + T + GE L E R+L L G+ +++ Q+ ++ Sbjct: 122 EATDSATFGSLVIDRSAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVW-E 180 Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 D + +V++ + +LR K+ + + + R +GY +D Sbjct: 181 HDYLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRLD 222 >gi|332709119|ref|ZP_08429087.1| two-component response regulator, CheY subfamily [Lyngbya majuscula 3L] gi|332352125|gb|EGJ31697.1| two-component response regulator, CheY subfamily [Lyngbya majuscula 3L] Length = 248 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 43/227 (18%), Positives = 95/227 (41%), Gaps = 10/227 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR---EDVSAIEAFLIGKGEK 59 ++++D L+++ + ++G + + + + V + L+ Sbjct: 22 LVVEDEELIREMIVLALQEEGYEVLTASDGATALTMLQDSDHTGYSVDLLILDLMLPQVN 81 Query: 60 VLELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AA 114 L+L R++ + +P++ +S S + + G DD + KP RE++AR Sbjct: 82 GLDLCRLLRYRGNPIPIMILSAKASETDRVLGLEVGADDYLTKPFSMRELIARCRALIRR 141 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + I+++ V+GE L +E R+LE + N + ++ Q+ Sbjct: 142 QHLNGITPTPVQQFREIKLYPQECRVTVRGEDVNLSPKEFRLLELFINNPRRVWSRDQLI 201 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220 ++G+ D + V+ HI LR+KL + + + + R GY Sbjct: 202 DQVWGM-DFVGDTKTVDVHIRWLREKLEEDPSKPEYLITVRGFGYRF 247 >gi|15896754|ref|NP_350103.1| response regulator [Clostridium acetobutylicum ATCC 824] gi|15026610|gb|AAK81443.1|AE007848_7 Response regulator (CheY-like receiver domain and HTH-type DNA-binding domain) [Clostridium acetobutylicum ATCC 824] gi|325510923|gb|ADZ22559.1| Response regulator (CheY-like receiver domain and HTH-type DNA-binding domain) [Clostridium acetobutylicum EA 2018] Length = 230 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 42/227 (18%), Positives = 76/227 (33%), Gaps = 15/227 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +G + S + D ++ G L Sbjct: 5 ILVVDDDRDIVKLITKSLSYEGFEMISAYSGKEALCALKENHIDFIILDIM--MPGMDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV---------NKPIHHREILARV 112 ++ R IR VP++ +S + + G DD + I Sbjct: 63 DVCRSIRKSYNVPILFLSARDKDIDKIVGLEIGADDYMAKPFSIQELTSRIRANFRKIDR 122 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 N P+ + + + L +E +IL L+ N + + Q Sbjct: 123 LFKEWNELSPNRERNDSPLILNDKTFEAFLNNRKLNLSTKEFQILSMLVHNPNNVLTREQ 182 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 I+ ++G DE E N V HI +RKKL +D + + +GY Sbjct: 183 IYEHVWG--DEYGELNTVTVHIKNIRKKLG--PEYDFIKTIWGIGYK 225 >gi|67924495|ref|ZP_00517917.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Crocosphaera watsonii WH 8501] gi|67853668|gb|EAM49005.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Crocosphaera watsonii WH 8501] Length = 236 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 34/231 (14%), Positives = 77/231 (33%), Gaps = 12/231 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D + + L + D+ ++ L G +V Sbjct: 3 ILIVEDEMEIAKIIQTTLERESFDCLVAYDGLTALDLFQNQEPDLIILDLMLPKLDGLEV 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILAR 111 R ++ ++ + +G DD + KP E + Sbjct: 63 CTRIRQKTTTKDPYILMLTAKGEEIDRVIGLSTGADDYLVKPFSPIELLARVRALLRRSL 122 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + + + + + E+ L E +L M+ G+ ++T Sbjct: 123 RHGGTQNNVYETSHFMVDLDKHSAIKKADNNTEEILELTTLEFNLLSTFMSYPGRVWSRT 182 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 Q+ ++G D +E VV++H+ +LRKK+ K + + +GY + Sbjct: 183 QLIDKLWGN-DFFGDERVVDTHVRRLRKKIEPKTANPTFIKTVVGVGYKFE 232 >gi|326693100|ref|ZP_08230105.1| two-component response regulator [Leuconostoc argentinum KCTC 3773] Length = 235 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 46/230 (20%), Positives = 98/230 (42%), Gaps = 14/230 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + + + S + D+ ++ L + Sbjct: 4 ILVVDDEKPISDIIKFNLTKEGYDVVTAADGQEALTMFSDEKPDLVLLDQML--PEIDGV 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR+ S++P+I ++ S + + G DD V KP +RE++ARV A R K Sbjct: 62 EVLRQIRSKSEIPVIMVTAKDSEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRSRKA 121 Query: 122 SNNRAETGPIR----------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 ++ + + G+ L RE +L YL + G+ + + Sbjct: 122 VAQHSDDTVVNTEDIELGDLTIHPQAYMVSKAGQDIELTHREFELLYYLAQHIGQVMTRE 181 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + ++G +D + V+ + +LR+K+ + + + ++R +GY + Sbjct: 182 HLLQQVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPNWLATRRGVGYYL 230 >gi|326204759|ref|ZP_08194614.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] gi|325985130|gb|EGD45971.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] Length = 232 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 45/227 (19%), Positives = 93/227 (40%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD ++D + +G ++ + +S R D+ ++ L Sbjct: 4 ILVIDDELAIRDLTELVLKREGFQVKTAENGRRGIIELNSFRPDLVLLDLML--PDCSGY 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 +L + I S +P+I +S + + G +D + KP +RE++AR+ + RR + Sbjct: 62 DLCKEIVKQSNIPVIMVSAKDETIDKVLGLELGAEDYITKPFDNRELIARIKVVLRRYEH 121 Query: 122 SNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 ++ + + D + + G L +E ILE L K + ++ Sbjct: 122 NDEAKYEYTTKLVCGELEINPDTKVVQKNGTQILLTAKEYGILETLFKRPKKIFTRDELL 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 ++G +D + + V+ I +LRKK+ V + GY + Sbjct: 182 EIVWG-YDYSGDSRSVDMTIMRLRKKIEEDSETPKYVKTIYGFGYQL 227 >gi|323487712|ref|ZP_08092970.1| response regulator [Planococcus donghaensis MPA1U2] gi|323398446|gb|EGA91234.1| response regulator [Planococcus donghaensis MPA1U2] Length = 235 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 48/228 (21%), Positives = 96/228 (42%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G ++ + + S + D+ ++ L + Sbjct: 5 ILVVDDEKPIADILQFNLKKEGFNVVCAYDGDEAIKIASEIQPDLMLLDIML--PNRDGM 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 E+ R IR P+I ++ S + + G DD V KP RE++ARV A RR Sbjct: 63 EVCREIRKKYDFPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRQNI 122 Query: 121 -------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 +N + G + + D + E L RE +L YL + G+ + + + Sbjct: 123 APAEEEGQHSNDIQVGVLTIQPDAYLVLKREETIELTHREFELLHYLGKHIGQVMTREHL 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++G +D + V+ + +LR+K+ + + ++R +GY + Sbjct: 183 LQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPAWIVTRRGVGYYL 229 >gi|218283223|ref|ZP_03489293.1| hypothetical protein EUBIFOR_01881 [Eubacterium biforme DSM 3989] gi|218216041|gb|EEC89579.1| hypothetical protein EUBIFOR_01881 [Eubacterium biforme DSM 3989] Length = 233 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 48/232 (20%), Positives = 86/232 (37%), Gaps = 15/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD A +++ L +G + L S D+ ++ Sbjct: 5 ILVADDNAEIREILRILLTGEGYEVIEAKDGNEVLQLFDS-SIDLIVLDIM--MPNMNGY 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + +R S VP++ ++ F SG DD + KP + E+ ARV A+ RR +V Sbjct: 62 QTCLKLRETSNVPILFLTAKGLDSDKTLGFSSGADDYLAKPFSYSELTARVKALLRRYQV 121 Query: 122 SNNRAE-----------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + E + + ++ EV G+ L E IL LM N + + Sbjct: 122 YKGKKEETLLDTEKDLSMDGLTLRYAQQNAEVNGKEVELTDIEFNILSTLMKNPKQIFSA 181 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 Q++ + N + HI LRKK+ + + + GY + Sbjct: 182 EQLYEKAWNEPYYYSANNTIMVHIRNLRKKIEKDPANPVYIKTIWGKGYRFE 233 >gi|326389795|ref|ZP_08211359.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus JW 200] gi|325994063|gb|EGD52491.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus JW 200] Length = 230 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 48/221 (21%), Positives = 95/221 (42%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + F +G ++ D+ ++ L G Sbjct: 6 ILIIEDEKHIARFLQLEFEHEGYTVTVTYDGLSGLKEALEGDYDLVLLDIML--PGIDGF 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IR HS +P+I ++ ++ ++ D G DD V KP E+ ARV A R+ K Sbjct: 64 EVLKKIREHSDIPVIMLTAKYEVKDKVEGLDIGADDYVTKPFSIEELFARVRAALRKKKP 123 Query: 122 SNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + I + + G L ++E +LE+L+ N + + +I ++G Sbjct: 124 HLKKDVLRYSDITMDLTTHEVRRAGIKIELTKKEFDLLEFLIKNANIALTREKILECVWG 183 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D + N+V+ +I LR K+ + + + R +GY++ Sbjct: 184 -YDYYGDTNIVDVYIRYLRSKIDDPFDRKLIHTIRGVGYTL 223 >gi|311070908|ref|YP_003975831.1| two-component response regulator [Bacillus atrophaeus 1942] gi|310871425|gb|ADP34900.1| two-component response regulator [Bacillus atrophaeus 1942] Length = 258 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 42/227 (18%), Positives = 87/227 (38%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + + +G + E L D+ ++ L + Sbjct: 32 ILLVEDDRSISEVVDHYLTKEGFHVVHAFDGEEGIQLFRQNAFDLILLDLML--PKLNGM 89 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI-------LARVAA 114 +L +IIR S++P++ IS G DD + KP E+ + R Sbjct: 90 DLLKIIREQSKIPVLIISAKDGDVEKALGLGFGADDYIAKPFSMIELSARVKAAIRRATQ 149 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N + + + + EV L +E +I++ L N K + QI+ Sbjct: 150 YAVNEPAETNIIRVHELTLDIENVLITKKDEVIQLTSKEWQIIKLLFTNPKKVFTREQIY 209 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 +++ D +EN++ H+ +LR+K+ + + + +GY + Sbjct: 210 RSVWNE-DYYGDENIINVHMRRLREKIEDDPSSPQYIKTLWGIGYKL 255 >gi|322389965|ref|ZP_08063505.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC 903] gi|321143401|gb|EFX38839.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC 903] Length = 233 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 44/232 (18%), Positives = 94/232 (40%), Gaps = 13/232 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + + ++ D+ ++ L L Sbjct: 4 ILVVDDEKPISDIIKFNMAKEGYEVLTAFDGREALEVFAAENPDIIILDLML--PEIDGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112 E+ R IR S VP+I +S + + + G DD V KP +RE + Sbjct: 62 EVARTIRKTSNVPIIVLSAKDTEFDKVIGLEIGADDYVTKPFSNRELQARVKALLRRSEF 121 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 AA + ++ G + + D + + L RE +L +L + G+ + + Sbjct: 122 AADPQLENEADTEIVIGDLHILPDAFLVQKGNKELDLTHREFELLYHLATHVGQVMTREH 181 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223 + ++G +D + V+ + +LR+K+ + + + ++R +GY + N Sbjct: 182 LLETVWG-YDYFGDVRTVDVTVRRLREKIEDTPGRPEYILTRRGVGYYMRNN 232 >gi|291548407|emb|CBL21515.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus sp. SR1/5] Length = 246 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 55/223 (24%), Positives = 99/223 (44%), Gaps = 6/223 (2%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEK 59 M ++D +++ + G EGF + + ++ ++ L G G Sbjct: 23 MIYCVEDERNIRELLVYTLETTGFEAEGFETGAELDTAMKKNMPELILLDIMLPGEDGYN 82 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +L+ + +P+I ++ + + + G DD + KP E +ARV A+ RR Sbjct: 83 ILKRLKSDTRTRDIPVIMVTAKEAEFDKVKGLEGGADDYITKPFGMMEFVARVKAVLRRC 142 Query: 120 KVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + +RV + QGEV L R+E +LEYLM N+G +++ QI + Sbjct: 143 ARQSEERELHCKGLRVNVSRHEVSYQGEVKELTRKEFELLEYLMENKGLVMSRNQILCHV 202 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G +D E V+ H+ LR+KL +++ R +GY I Sbjct: 203 WG-YDFDGETRTVDVHVRTLRQKLGEAGN--LIETVRGVGYRI 242 >gi|302553755|ref|ZP_07306097.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces viridochromogenes DSM 40736] gi|302471373|gb|EFL34466.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces viridochromogenes DSM 40736] Length = 225 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 51/222 (22%), Positives = 94/222 (42%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D ++ G + S E L R D+ ++ L G Sbjct: 4 LLLIEDDDAIRTALELSLTRQGHRVATAASGEDGLKLLREQRPDLIVLDVML--PGIDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR Q+P+I ++ + +SG DD V KP+ R + AR+ A+ RR + Sbjct: 62 EVCRRIRRTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGER 121 Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 +N A + + GE L E R+L L G+ +++ Q+ ++ Sbjct: 122 ESNDAASFGSLVIDRSAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVW-E 180 Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 D + +V++ + +LR K+ + + + R +GY +D Sbjct: 181 HDYLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRLD 222 >gi|3511129|gb|AAC33719.1| regulatory protein CopR [Salmonella enterica subsp. enterica serovar Dublin] Length = 248 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 46/219 (21%), Positives = 90/219 (41%), Gaps = 3/219 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D + + G ++ L + ++ L G Sbjct: 25 ILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIML--PGLDGW 82 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R +R Q P I ++ S++ + ++G +D + KP E+L RV A R+ Sbjct: 83 QVLRALRTAHQSPFICLTARDSVEDRVKGLEAGANDYLVKPFSFGELLGRVRAQLRQHVP 142 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 R + + + + G+ L R+E +L L + G+ V +T I S ++G+ Sbjct: 143 VFTRLTINGLDMDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWGI- 201 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + E N V+ I +LR K+ + + R +GY + Sbjct: 202 NFDSETNTVDVAIRRLRAKVDEPFEKKLIMTVRGMGYRL 240 >gi|332530601|ref|ZP_08406535.1| DNA-binding transcriptional regulator BaeR [Hylemonella gracilis ATCC 19624] gi|332039938|gb|EGI76330.1| DNA-binding transcriptional regulator BaeR [Hylemonella gracilis ATCC 19624] Length = 235 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 49/223 (21%), Positives = 94/223 (42%), Gaps = 5/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + +G + ++ E + DV ++ L G + Sbjct: 7 ILIVEDEPKLAQVLMVYLRAEGFATTHVDNGLAVEAAVRAHAPDVILLDLML--PGLDGI 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R +RA PLI ++ L + G DD + KP + RE++ARV A RR Sbjct: 65 SVCRQLRAFCHAPLIMLTARVDELDRLLGLEVGADDYLCKPYNPREVVARVKAQLRRAAW 124 Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + ++ G+ L E R+L L A G+ +++ Q+ ++ Sbjct: 125 GPPASAQPGTLQLDDATLRASYAGQALDLTPAEFRLLSSLAAQAGRILSRAQLLDHLHD- 183 Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 A+ + ++SH+ LR+KL G DP+ S +GY+ + Sbjct: 184 DGRAITDRAIDSHVRNLRRKLDAAAPGRDPIRSVYGVGYAWEE 226 >gi|294667833|ref|ZP_06733043.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292602459|gb|EFF45900.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 227 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 54/219 (24%), Positives = 95/219 (43%), Gaps = 3/219 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + G S + + + D+ ++ L +G L+ Sbjct: 11 LIVEDEPRLAAVLGEYLHAAGYSHDWIADGAQALGAFRAQQPDLVLLDLMLPNRG--GLD 68 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +R S VP+I ++ L + G DD + KP RE++ARV A+ RR + Sbjct: 69 ICRDLRKESAVPVIMVTARVEEIDRLLGLEIGADDYICKPFSPREVVARVQAVLRRHRHD 128 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 + A +++ D V G L + E R+L L A G+ ++ Q+ +Y Sbjct: 129 PHGAPAPGLQIDEDACRASVDGRTLDLTQVEFRLLRTLAAAPGRVYSREQLMGRLY-ADH 187 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 V + V+SH+ LR+KL + G D V S GY + Sbjct: 188 RIVTDRTVDSHVKNLRRKLADAGGEDWVRSVYGAGYRFE 226 >gi|4455703|emb|CAB36688.1| putative two-component response regulator [Mycobacterium leprae] Length = 253 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 50/224 (22%), Positives = 95/224 (42%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 + +DD V++ +G S+E N + + R D ++ L Sbjct: 28 ILAVDDDRAVRESLRRSLSFNGYSVELANDGVEALEMVARDRPDALVLDVM--MPRLDGL 85 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +R+ P++ ++ S+ + D+G DD + KP E+LAR+ A+ RR K Sbjct: 86 EVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARIRALLRRTK 145 Query: 121 VSN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + + R+ L R E +LE L+AN + + +++I Sbjct: 146 PDDAAESVAMSFSDLTLDPVTREVARGQRWISLTRTEFALLEMLIANPRRVLTRSRILEE 205 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G FD N +E ++ LR+K + + R +GY + Sbjct: 206 VWG-FDFPTSGNALEVYVGYLRRKTEADGESRLIHTVRGVGYVL 248 >gi|322383919|ref|ZP_08057649.1| two-component response regulator YclK-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321151396|gb|EFX44583.1| two-component response regulator YclK-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 244 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 50/227 (22%), Positives = 92/227 (40%), Gaps = 10/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++++ ++G + + + L + ++ Sbjct: 22 ILVVEDEHILREIIKDYLLNEGYQVLEAINGKEALTLFEENEVHLVILDIM--MPELDGW 79 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R IR S +P+I ++ TL F+ G DD V KP +LAR + Sbjct: 80 SVCRRIRKTSNIPVIMLTARADEDDTLLGFELGADDYVTKPFSPPILLARAKRLLESRYA 139 Query: 122 SNNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + I V R +V G+ L E IL YLM N+G + + Q+ + Sbjct: 140 IEEETNGNSLSSCGIHVDFPSRTVKVDGKDINLTYTEFEILTYLMHNQGIVITREQLITK 199 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 I+G ++ + ++ V SHI LR KL +K + + GY + N Sbjct: 200 IWG-YEFSGDDRTVNSHIRNLRTKLGDKS--KCIITVVRAGYKFEGN 243 >gi|167761025|ref|ZP_02433152.1| hypothetical protein CLOSCI_03423 [Clostridium scindens ATCC 35704] gi|167661404|gb|EDS05534.1| hypothetical protein CLOSCI_03423 [Clostridium scindens ATCC 35704] Length = 228 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 40/220 (18%), Positives = 85/220 (38%), Gaps = 3/220 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 L++D + L +G ++ +S + R D++ ++ L Sbjct: 4 IFLVEDDKEIAKNLALLLRTEGFNVTHASSQSEAISVLDGNRFDLALVDISL--PDGNGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + I+ +P+I ++ + + + G DD + KP RE+ AR+ R+ Sbjct: 62 TVCTEIKQAQNIPVIFLTASGDEASVVTGLNMGADDYIIKPFRPRELTARIRTALRKYGH 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 S E + V + + G L E R+L + N + + ++ ++ Sbjct: 122 SPAAFEMCDLHVDTASGVVKKGGREVFLSALEYRLLLIFINNPNVIITRDRLLDELWDAA 181 Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 E V N + +I +LR+K+ + + + R GY + Sbjct: 182 GEFVNNNTLTVYIKRLREKIENDPGNPQIILTVRGTGYRL 221 >gi|107023057|ref|YP_621384.1| two component heavy metal response transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116686702|ref|YP_839949.1| two component heavy metal response transcriptional regulator [Burkholderia cenocepacia HI2424] gi|170735469|ref|YP_001774583.1| two component heavy metal response transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|105893246|gb|ABF76411.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia cenocepacia AU 1054] gi|116652417|gb|ABK13056.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia cenocepacia HI2424] gi|169821507|gb|ACA96088.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia cenocepacia MC0-3] Length = 225 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 44/221 (19%), Positives = 89/221 (40%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + G S++ L R DV ++ L Sbjct: 3 ILIVEDEPKTGAYLKKGLEESGFSVDLAKDGGEGLTLAQEERYDVIVLDVML--PVLDGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120 + + +R P++ ++ +Q + + G DD + KP E+LAR+ R Sbjct: 61 AVLKRLRDTHTTPVLFLTARDDVQDRVHGLELGADDYLVKPFAFVELLARIRTLARRGPP 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 G + + R + L RE +L+ L +G+ +++TQI S ++ + Sbjct: 121 RETEHLAVGDLEIDVVRRRVKRGATRIDLTPREFSLLQLLARRQGEVLSRTQIASYVWDM 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + NVVE I +LR K+ + + + R +GY ++ Sbjct: 181 -NFDSDTNVVEVAIRRLRAKIDDAFPVKLIHTVRGVGYVLE 220 >gi|239943794|ref|ZP_04695731.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239990247|ref|ZP_04710911.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] Length = 228 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 50/222 (22%), Positives = 94/222 (42%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D ++ G + + E L R D+ ++ L G Sbjct: 7 LLLIEDDDAIRTALELSLSRQGHRVATAATGEDGLELLREQRPDLVVLDVML--PGIDGF 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120 E+ R IR Q+P+I ++ + +SG DD V KP+ R + AR+ A+ R + Sbjct: 65 EVCRRIRRTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGER 124 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 S + A G + + GE L E R+L L G+ +++ Q+ ++ Sbjct: 125 ESTDSATFGNVVIDRSAMTVTKDGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVW-E 183 Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 D + +V++ + +LR K+ + + + R +GY +D Sbjct: 184 HDYLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRLD 225 >gi|166032765|ref|ZP_02235594.1| hypothetical protein DORFOR_02480 [Dorea formicigenerans ATCC 27755] gi|166027122|gb|EDR45879.1| hypothetical protein DORFOR_02480 [Dorea formicigenerans ATCC 27755] Length = 229 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 41/225 (18%), Positives = 92/225 (40%), Gaps = 10/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD L+ G DG+ ++ E L + ++ ++ L + Sbjct: 6 LVVDDEKLIVKGIRFSLEQDGMDVDCAYDGEEALKLIRENKYNIILLDVML--PKLDGFQ 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH------HREILARVAAIY 116 + + +R S VP++ ++ + + G DD + KP + + + R Sbjct: 64 VCQQVREFSDVPIVMLTAKGEDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRTERQ 123 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + G +++ +GR + L +E +LE L N+ K ++ + + Sbjct: 124 TEERPKGRQIVKGDMKIDCEGRRVVIGEREVNLTAKEFDLLELLAMNQDKVYSRENLLNI 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++G ++ + V+ HI +LR+K+ N V +K +GY Sbjct: 184 VWG-YEYPGDARTVDVHIRRLREKIEKNPSDPKYVHTKWGVGYYF 227 >gi|296876105|ref|ZP_06900159.1| response regulator [Streptococcus parasanguinis ATCC 15912] gi|296432816|gb|EFH18609.1| response regulator [Streptococcus parasanguinis ATCC 15912] Length = 233 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 45/232 (19%), Positives = 94/232 (40%), Gaps = 13/232 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + + ++ DV ++ L L Sbjct: 4 ILVVDDEKPISDIIKFNMAKEGYEVLTAFDGREALEVFAAENPDVIILDLML--PEIDGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112 E+ R IR S VP+I +S + + + G DD V KP +RE + Sbjct: 62 EVARTIRKTSNVPIIVLSAKDTEFDKVIGLEIGADDYVTKPFSNRELQARVKALLRRSEF 121 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 AA + ++ G + + D + + L RE +L +L + G+ + + Sbjct: 122 AADPQLENDADTEIVIGDLHILPDAFLVQKGNKELDLTHREFELLYHLATHVGQVMTREH 181 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223 + ++G +D + V+ + +LR+K+ + + + ++R +GY + N Sbjct: 182 LLETVWG-YDYFGDVRTVDVTVRRLREKIEDTPGRPEYILTRRGVGYYMRNN 232 >gi|171780121|ref|ZP_02921025.1| hypothetical protein STRINF_01909 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171281469|gb|EDT46904.1| hypothetical protein STRINF_01909 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 236 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 51/232 (21%), Positives = 98/232 (42%), Gaps = 16/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G D+ ++ L L Sbjct: 4 ILIVDDEKPISDIIKFNLTKEGYETVTAFDGREAITKFEEENPDLIILDLML--PELDGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + +R S +P+I +S S + + G DD V KP +RE+LARV A RR + Sbjct: 62 EVAKEVRKTSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTEN 121 Query: 122 ------------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 SN+ G +++ D + +GE L RE +L +L + G+ + Sbjct: 122 IESAVAEENASSSNSEITIGDLKILPDAFVAQKRGEDIELTHREFELLHHLATHMGQVMT 181 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + + ++G +D + V+ I +LR+K+ + + + ++R +GY + Sbjct: 182 REYLLETVWG-YDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYM 232 >gi|73662569|ref|YP_301350.1| respiratory response protein SrrA [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72495084|dbj|BAE18405.1| staphylococcal respiratory response protein SrrA [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 241 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 36/231 (15%), Positives = 85/231 (36%), Gaps = 14/231 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ + + N + ++ L + Sbjct: 5 ILIVDDEDRIRRLLKLYLERESFEIHEANDGNEAYRMAMEHDYACILLDLML--PEMDGI 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112 + +R H + P+I ++ ++ F+SG DD + KP RE +V Sbjct: 63 TVASKLREHKETPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQV 122 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 A + + + E + + +D G L +E +L +L K + Q Sbjct: 123 ATAEQSEPHARDLIEFDHLVIDNDAHRVLADGSQVNLTPKEYELLIFLAKTPNKVFDREQ 182 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSID 221 + ++ ++ + V++H+ +LR+KL ++ + + +GY + Sbjct: 183 LLKEVW-HYEFYGDLRTVDTHVKRLREKLNRVSEDAAHMIQTVWGVGYKFE 232 >gi|51597134|ref|YP_071325.1| DNA-binding transcriptional regulator BaeR [Yersinia pseudotuberculosis IP 32953] gi|153949110|ref|YP_001400191.1| BaeR family transcriptional regulator [Yersinia pseudotuberculosis IP 31758] gi|170023569|ref|YP_001720074.1| DNA-binding transcriptional regulator BaeR [Yersinia pseudotuberculosis YPIII] gi|186896226|ref|YP_001873338.1| DNA-binding transcriptional regulator BaeR [Yersinia pseudotuberculosis PB1/+] gi|51590416|emb|CAH22056.1| two-component system response regulator [Yersinia pseudotuberculosis IP 32953] gi|152960605|gb|ABS48066.1| transcriptional regulatory protein BaeR [Yersinia pseudotuberculosis IP 31758] gi|169750103|gb|ACA67621.1| two component transcriptional regulator, winged helix family [Yersinia pseudotuberculosis YPIII] gi|186699252|gb|ACC89881.1| two component transcriptional regulator, winged helix family [Yersinia pseudotuberculosis PB1/+] Length = 239 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 44/221 (19%), Positives = 86/221 (38%), Gaps = 5/221 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + + G + + + ++ L G + Sbjct: 15 LIVEDEPKLGQLLVDYLQAAGYRTQWLTNGAEVVATVRQTPPAIILLDLML--PGSDGIT 72 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R IR S +P++ ++ L + G DD + KP RE++ARV I RR Sbjct: 73 LCREIRRFSDIPIVMVTAKTEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCSQQ 132 Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 ++ + QG + L E R+L+ L + G ++ Q+ + +Y + Sbjct: 133 RHQPTDDAPLLINESRFQASYQGHMLELTPAEFRLLKILASQPGHVFSREQLLNNLYDDY 192 Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 V + ++SHI LR+KL + + +GY + Sbjct: 193 -RVVTDRTIDSHIKNLRRKLELLDGEKPFIRAVYGMGYRWE 232 >gi|269125708|ref|YP_003299078.1| winged helix family two component transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268310666|gb|ACY97040.1| two component transcriptional regulator, winged helix family [Thermomonospora curvata DSM 43183] Length = 225 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 43/224 (19%), Positives = 91/224 (40%), Gaps = 11/224 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + +G + + D+ ++ L G L Sbjct: 6 ILVVEDEPAIAEAVAERLRAEGFTAVIARDGLDAVERFRRSAPDLVVLDLML--PGLDGL 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R ++A VP++ ++ L G DD + KP R ++ARV A+ RR++ Sbjct: 64 EVCRRLQAERPVPVLMLTARGEETDQLIGLGVGADDYLTKPFSMRVLVARVRALLRRIER 123 Query: 122 SNNRAETGPI----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + V R ++G L E +L +L G ++ ++ + Sbjct: 124 ARSGTHPVVRLGGLEVDRAARRVRLRGAQVHLTPTEFELLAFLAGAPGTVFSRAELLERV 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +G A V+SH+ LR+KL + + + + +GY+++ Sbjct: 184 WGWTAGAG-TRTVDSHVRALRRKLGD----EIIRTAHGVGYALE 222 >gi|262202521|ref|YP_003273729.1| response regulator receiver [Gordonia bronchialis DSM 43247] gi|262204066|ref|YP_003275274.1| response regulator receiver [Gordonia bronchialis DSM 43247] gi|262085868|gb|ACY21836.1| response regulator receiver [Gordonia bronchialis DSM 43247] gi|262087413|gb|ACY23381.1| response regulator receiver [Gordonia bronchialis DSM 43247] Length = 244 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 47/223 (21%), Positives = 94/223 (42%), Gaps = 8/223 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++I+D + + G ++ + +A V ++ L +E Sbjct: 13 LVIEDEPDIAEVVADYLQRSGFTVTVAPDGQEGVAAARTASPAVVILDLGL--PSLDGVE 70 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +R + ++ ++ T+ G DD + KP RE++AR+ A+ RR + + Sbjct: 71 VCRQLRTFTNAYIVMVTARADEVDTVVGLSVGADDYLTKPFRPRELMARIDAMLRRPRPT 130 Query: 123 NNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 GR+ +V+ L R E +LE L G ++ Q+ + I+ Sbjct: 131 PTGESHPRTIGELTLDPQGREVQVESTPVELTRTEFDVLEALTRRPGVVFSREQLLTEIW 190 Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 G D + +VVE H++ LR+KL + + + + R +GY + Sbjct: 191 G-PDWVGDAHVVEVHVASLRRKLGDSAVAGRFIRTVRGVGYRM 232 >gi|217967623|ref|YP_002353129.1| two component transcriptional regulator, winged helix family [Dictyoglomus turgidum DSM 6724] gi|217336722|gb|ACK42515.1| two component transcriptional regulator, winged helix family [Dictyoglomus turgidum DSM 6724] Length = 232 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 47/227 (20%), Positives = 90/227 (39%), Gaps = 8/227 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + + L +G +E D+ ++ L + Sbjct: 4 ILLVEDDKGIVNSLTLLLNKEGYEVEVAYDGVEALNKFKLFNPDLVLLDIML--PEKDGW 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118 E+ + IR S VP+I ++ + G DD + KP +E + V Y+ Sbjct: 62 EVCKEIRKISNVPIIMLTAKDEEVDKVLGLKMGADDYITKPFGAKELLARIEAVLRRYQS 121 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + P + R +V+G+ L RE IL+ L+++ G+ + I I+ Sbjct: 122 DLSKSQKIVAPPFEMDLVKRTVKVKGKEVNLSYREFEILKLLLSSPGRVWTRDMIIKHIW 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI-DWN 223 G + E V+ +I LR+K+ + + + R LGY + N Sbjct: 182 GE-NFWGEPRAVDVYIRWLREKVEDDPSHPKYIITVRNLGYKFQEGN 227 >gi|27468287|ref|NP_764924.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus epidermidis ATCC 12228] gi|57867182|ref|YP_188829.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus epidermidis RP62A] gi|242242958|ref|ZP_04797403.1| response regulator [Staphylococcus epidermidis W23144] gi|251811087|ref|ZP_04825560.1| response regulator [Staphylococcus epidermidis BCM-HMP0060] gi|282875886|ref|ZP_06284753.1| response regulator receiver domain protein [Staphylococcus epidermidis SK135] gi|293366360|ref|ZP_06613039.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus epidermidis M23864:W2(grey)] gi|27315833|gb|AAO04968.1|AE016748_202 alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus epidermidis ATCC 12228] gi|57637840|gb|AAW54628.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus epidermidis RP62A] gi|242233559|gb|EES35871.1| response regulator [Staphylococcus epidermidis W23144] gi|251805384|gb|EES58041.1| response regulator [Staphylococcus epidermidis BCM-HMP0060] gi|281294911|gb|EFA87438.1| response regulator receiver domain protein [Staphylococcus epidermidis SK135] gi|291319485|gb|EFE59852.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus epidermidis M23864:W2(grey)] gi|319401007|gb|EFV89226.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Staphylococcus epidermidis FRI909] gi|329724661|gb|EGG61167.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus epidermidis VCU144] gi|329733744|gb|EGG70070.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus epidermidis VCU045] gi|329737321|gb|EGG73575.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus epidermidis VCU028] Length = 236 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 46/231 (19%), Positives = 97/231 (41%), Gaps = 14/231 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + G +E E + + ++ ++ L + + Sbjct: 5 ILVVDDEQSIVTLLKYNLETAGYIVEVAYDGEEALKKVETEQPELIVLDVML--PKKDGI 62 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ + IR+ VP++ ++ + + G DD + KP RE++ARV AI RR + Sbjct: 63 EVCKTIRSDKNLVPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRRSQ 122 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPL---------PRRERRILEYLMANRGKRVAKT 171 N + ++ E F + +E +L YL+ +G+ + + Sbjct: 123 FVNEIEKEDVDDEDIIIGSIRIRPEFFEVYKEDELLELTPKEFELLLYLIERQGRVITRE 182 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + ++++ ++ A + +V+ HIS LR KL + + R LGY ++ Sbjct: 183 HMLNSVW-NYEFAGDSRIVDVHISHLRDKLEENPKQPKLIKTVRGLGYKLE 232 >gi|52080824|ref|YP_079615.1| two-component response regulator YclJ [Bacillus licheniformis ATCC 14580] gi|52786195|ref|YP_092024.1| hypothetical protein BLi02455 [Bacillus licheniformis ATCC 14580] gi|319645218|ref|ZP_07999451.1| hypothetical protein HMPREF1012_00484 [Bacillus sp. BT1B_CT2] gi|52004035|gb|AAU23977.1| two-component response regulator YclJ [Bacillus licheniformis ATCC 14580] gi|52348697|gb|AAU41331.1| putative protein [Bacillus licheniformis ATCC 14580] gi|317393027|gb|EFV73821.1| hypothetical protein HMPREF1012_00484 [Bacillus sp. BT1B_CT2] Length = 233 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 47/231 (20%), Positives = 95/231 (41%), Gaps = 16/231 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + D +G N+ + D+ ++ L L Sbjct: 6 ILIIEDDEAIADLLSYGLTSEGFETCTVNNGSSGMRKLDQFKPDLLLLDWML--PDCSGL 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + + +P++ I+ + + + G DD + KP RE++AR+ I RRL+ Sbjct: 64 DICKKVTESCNIPILMITAKSDITDKILGLEFGADDYITKPFDLREVVARIRTILRRLEQ 123 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF----------PLPRRERRILEYLMANRGKRVAKT 171 +++ E +V V L +E +L L+ +RGK ++ Sbjct: 124 AHHVNERETEKVDEIRFKNIVIVPGERLVKKDGAAVELTPKEYDLLMTLVDHRGKVFTRS 183 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 ++ I+G +D + V++HI +LRKKL D + + +GY + Sbjct: 184 ELLEFIWG-YDFFGDTRTVDTHIQRLRKKLD---ASDLIKTVFGIGYKFEK 230 >gi|206900113|ref|YP_002250961.1| response regulator DrrA [Dictyoglomus thermophilum H-6-12] gi|206739216|gb|ACI18274.1| response regulator DrrA [Dictyoglomus thermophilum H-6-12] Length = 232 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 47/227 (20%), Positives = 90/227 (39%), Gaps = 8/227 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + + L +G +E D+ ++ L + Sbjct: 4 ILLVEDDKGIVNSLSLLLNKEGYEVEVAYDGVEALNKFKLFNPDLVLLDIML--PEKDGW 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118 E+ + IR S VP+I ++ + G DD + KP +E + V Y+ Sbjct: 62 EVCKEIRKISNVPIIMLTAKDEEVDKVLGLKMGADDYITKPFGAKELLARIEAVLRRYQS 121 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + P + R +V+G+ L RE IL+ L+++ G+ + I I+ Sbjct: 122 DLSKSQKIVAPPFEMDLVKRTVKVKGKEVNLSYREFEILKLLLSSPGRVWTRDMIIKHIW 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI-DWN 223 G + E V+ +I LR+K+ + + + R LGY + N Sbjct: 182 GE-NFWGEPRAVDVYIRWLREKVEDDPSHPKYIITVRNLGYKFQEGN 227 >gi|116750317|ref|YP_847004.1| two component transcriptional regulator [Syntrophobacter fumaroxidans MPOB] gi|116699381|gb|ABK18569.1| two component transcriptional regulator, winged helix family [Syntrophobacter fumaroxidans MPOB] Length = 227 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 37/225 (16%), Positives = 81/225 (36%), Gaps = 11/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G + + D+ ++ + G Sbjct: 6 ILIVEDDSDILHLLAYNIEAAGFDVVKAMDGNTALEMVRRHPPDLVVLDLMI--PGIDGF 63 Query: 62 ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAI 115 E+ + ++ +P+I ++ + + G DD V KP RE + + Sbjct: 64 EVCKELKRGAETRGIPVIMLTARGEEVDRIVGLELGADDYVVKPFSPRELILRIRAILRR 123 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + V +G V G PL E ++L + GK + + Q+ Sbjct: 124 SATDATEERIWRSEGLSVDFEGHKLTVDGAETPLTATEFKLLAEFVRTPGKVLTRDQLLD 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ + V++H+ +LR+KL D V++ R +GY Sbjct: 184 RVW-AYQFEGYARTVDTHVRRLRRKLG--PHADRVETVRGVGYRF 225 >gi|303240403|ref|ZP_07326921.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] gi|302592130|gb|EFL61860.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] Length = 230 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 41/223 (18%), Positives = 90/223 (40%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD + + + +G +E S R D+ ++ L Sbjct: 6 ILIIDDELSILNLVSMVLKREGYEVEQARDGNTGLRFFESFRPDLIILDIML--PDINGN 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 E+ +++R++S +P++ ++ + + + G DD + KP +RE+L RV Sbjct: 64 EVCKMVRSNSSIPIMMLTAKSDIVDKIVGLELGADDYLTKPFDNRELLVRVKALLRRTGL 123 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 V+ + I + + + L E ++LE M N + + + + ++ Sbjct: 124 KDVNPDILSYSDIVINLKEKVLLKNNKRISLTPIEYQLLELFMKNPSRVFTREDLLTRVW 183 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 G +D + V+ I++LRKK+ + + + GY Sbjct: 184 G-YDYYGDSRTVDISITRLRKKIEDDSKNPKYIVTAYGFGYCF 225 >gi|300119508|ref|ZP_07057060.1| DNA-binding response regulator [Bacillus cereus SJ1] gi|298723098|gb|EFI63988.1| DNA-binding response regulator [Bacillus cereus SJ1] Length = 233 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 46/230 (20%), Positives = 89/230 (38%), Gaps = 11/230 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ ++G + E L + ++ + Sbjct: 6 ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIM--MPKVDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + +R ++P+I +S + +G DD V KP + E++AR+ + RR Sbjct: 64 HMCMKVREEKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMK 123 Query: 122 SNNRAETG-------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N A +++ V+GE L RE ILE L N G + QI+ Sbjct: 124 MNGFAIQNEDELEIGEMKINISTHKVIVEGEEVKLTPREFSILELLARNSGMVFSAEQIY 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223 ++ +N V HI K+R+K+ + + +GY I+ + Sbjct: 184 EKVWNERSFQ-SDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGYKIEKD 232 >gi|288554581|ref|YP_003426516.1| two-component response regulator yycF [Bacillus pseudofirmus OF4] gi|288545741|gb|ADC49624.1| two-component response regulator yycF [Bacillus pseudofirmus OF4] Length = 236 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 49/226 (21%), Positives = 95/226 (42%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + D+ ++ L K + Sbjct: 5 ILVVDDEKPIADILKFNLEKEGFEVFCAYDGNEAVEQVKKEEPDLILLDIMLPHK--DGM 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R +P+I ++ S + + G DD V KP RE+LARV A RR K Sbjct: 63 EVCREVRKSYDIPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRRKS 122 Query: 122 SNNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 T ++ D + +GE L RE ++ YL + G+ + + + Sbjct: 123 GAEEVSTQKELTVGDLTIYPDAYQVKRRGETIELTHREFELIHYLAKHLGQVMTREHLLQ 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 A++G +D + V+ + +LR+K+ + + + ++R +GY + Sbjct: 183 AVWG-YDYFGDVRTVDVTVRRLREKVEDNPSYPNWIITRRGVGYYL 227 >gi|283788536|ref|YP_003368401.1| two-component response regulator [Citrobacter rodentium ICC168] gi|282951990|emb|CBG91717.1| two-component response regulator [Citrobacter rodentium ICC168] Length = 226 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 44/219 (20%), Positives = 94/219 (42%), Gaps = 3/219 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D +D + G ++ + + + ++ L G Sbjct: 3 ILLIEDNQKTRDWVSQGLSEAGYVVDQASDGKEGLRFALQESYALIILDIML--PGLDGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + +R +Q P+I ++ +++ + +S +D + KP E+LARV A R Sbjct: 61 QVLKALRTANQTPVICLTARDAVEDRVKGLESSANDYLVKPFSFAELLARVRAQLRNHSP 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + + + S + G+ L R+E +L L + G+ + +T I S ++G+ Sbjct: 121 HHTYLKISGLEMDSVRQSVSRDGKAIVLTRKEFLLLWLLASRAGEIIPRTVIASEVWGI- 179 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + E N V+ I +LR K+ + + + R +GY Sbjct: 180 NFDSETNTVDVAIRRLRSKVDDPFDVKLIGTVRGMGYRF 218 >gi|226305111|ref|YP_002765069.1| two-component response regulator RegX3 [Rhodococcus erythropolis PR4] gi|229490687|ref|ZP_04384525.1| response regulator, two-component system [Rhodococcus erythropolis SK121] gi|226184226|dbj|BAH32330.1| two-component response regulator RegX3 [Rhodococcus erythropolis PR4] gi|229322507|gb|EEN88290.1| response regulator, two-component system [Rhodococcus erythropolis SK121] Length = 229 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 51/227 (22%), Positives = 97/227 (42%), Gaps = 11/227 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + D L +G N + D+ ++ L G + Sbjct: 5 LIVEDEESLADPLAFLLRKEGFETTIVNDGPSALAEFDRSGADIVLLDLML--PGMSGTD 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARVAAI 115 + + +R+ S VP+I ++ S + + G DD V KP R +L R Sbjct: 63 VCKALRSRSGVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGVEN 122 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 L N E GP+R+ + +V G LP +E +LEYL+ N G+ + + Q+ Sbjct: 123 EADLASDNGVLEAGPVRMDVERHVVQVAGNPVTLPLKEFDLLEYLLRNSGRVLTRGQLID 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 ++G D + ++ H+ +LR K+ + + + + R LGY ++ Sbjct: 183 RVWGA-DYVGDTKTLDVHVKRLRSKIESDPAKPEHLVTVRGLGYKLE 228 >gi|257068117|ref|YP_003154372.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Brachybacterium faecium DSM 4810] gi|256558935|gb|ACU84782.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Brachybacterium faecium DSM 4810] Length = 229 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 43/226 (19%), Positives = 88/226 (38%), Gaps = 9/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D D +G + ++ + S+ D+ ++ L G Sbjct: 4 ILIVEDEESFSDPLSYSLRKEGYEVAVADNGIDGLRIFSAHGADLVLLDLML--PGMSGT 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-----ILARVAAIY 116 E+ R IR S VP+I ++ + + G DD V KP RE Sbjct: 62 EVCREIRRTSSVPVIMLTAKDDEFDKVLGLELGADDYVTKPYSSRELLARIKAVLRRRHD 121 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + + + EV+G+ LP +E +LE L+ N + + + Q+ Sbjct: 122 SGEAEDDAPLRAAHLMMDVERHVVEVRGQEVALPLKEFELLEMLLRNVDRVLTRGQLIDR 181 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 ++G + + ++ H+ +LR K+ + + + R LGY + Sbjct: 182 VWGA-NYVGDTKTLDVHVKRLRAKIEDDPRNPVHLVTVRGLGYKFE 226 >gi|116624116|ref|YP_826272.1| two component transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116227278|gb|ABJ85987.1| two component transcriptional regulator, winged helix family [Candidatus Solibacter usitatus Ellin6076] Length = 224 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 43/219 (19%), Positives = 80/219 (36%), Gaps = 5/219 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + DG L + D+ ++ L Sbjct: 4 ILVVEDDQRTAESIKLYLEHDGFEARLAADGLSALELCRTTAPDLVILDRMLPL--VDGA 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +RA +P+I ++ + L+ G DD V KP RE+ R Sbjct: 62 EICRRLRAAGNIPIIMLTARTTEADKLEGLRLGADDYVTKPFSPREL-VARVHAVLRRAA 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 I + + GE L E ++LE L G+ +++++ I+G + Sbjct: 121 PAPAPRFAAIAIDFERGTLHRHGEPIALTTTEFKLLETLCRAPGRIFSRSELLERIFG-W 179 Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219 D E V+ HI+ LR+K+ + + + GY Sbjct: 180 DYEGTERTVDVHIANLRRKIDDNPAQPALIATIFGAGYK 218 >gi|289432837|ref|YP_003462710.1| transcriptional regulator [Dehalococcoides sp. GT] gi|288946557|gb|ADC74254.1| two component transcriptional regulator, winged helix family [Dehalococcoides sp. GT] Length = 227 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 47/223 (21%), Positives = 88/223 (39%), Gaps = 8/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD + + A +G + + D+ ++ L Sbjct: 5 ILIADDEKRIAEILQAYLEREGFRVIATYDGKTALAKFHEENPDLIILDLML--PEISGW 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R IR S+VP+I ++ L L + G DD + KP +E++ARV RR + Sbjct: 63 DVCREIRKESRVPIIMLTARDELTDKLIGLEIGADDYMTKPFESKELVARVKVQLRRSEY 122 Query: 122 SNNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + + + R ++ G+ L E IL L + G+ ++ QI + Sbjct: 123 PPSPDSALVIDQLEIDQERRLVKIDGKTVDLTATEFDILISLAVSPGRVFSRMQILDKL- 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 E ++SHI LRKK+ L + + +GY + Sbjct: 182 -GEAYEGYERTIDSHIKNLRKKIEPNLESPTYILTVHGVGYKM 223 >gi|229119190|ref|ZP_04248509.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock1-3] gi|228664279|gb|EEL19801.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock1-3] Length = 256 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 43/230 (18%), Positives = 89/230 (38%), Gaps = 12/230 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D +++ + + + L + + D+ ++ + E Sbjct: 25 LIVEDEENIREVCKRYLEREEYEVYTAVNGTEGWDLFLTHQPDLIILDLM--MPKKDGWE 82 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L IR S VP+I ++ + + G DD V KP RE++ RV I RR Sbjct: 83 LCEEIRQQSNVPIIMLTAKGEERDRILGLTMGADDYVTKPFSPRELVLRVQIILRRGSQV 142 Query: 123 NNR--------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + E ++++ R V L +E +L + + + +++Q+ Sbjct: 143 PIQAKESLTEVIEFPDLKIYPKTRCVLVCENKVELTAKEFEVLYLMAKHPKQVFSRSQLL 202 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223 I+ + V N+V +S+LR KL + + +GY + N Sbjct: 203 ELIWDT-EHEVATNIVTVLVSRLRDKLEKHTIKSRWIHTVWGIGYRFEPN 251 >gi|226324464|ref|ZP_03799982.1| hypothetical protein COPCOM_02245 [Coprococcus comes ATCC 27758] gi|225206912|gb|EEG89266.1| hypothetical protein COPCOM_02245 [Coprococcus comes ATCC 27758] Length = 229 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 45/225 (20%), Positives = 88/225 (39%), Gaps = 10/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD L+ G D + ++ E + D+ ++ L E Sbjct: 6 LVVDDEKLIVKGLRFSLEQDDMEVDCAYDGEEALEMVKRKEYDMILLDVML--PKYDGFE 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH------HREILARVAAIY 116 + R IR S VP+I ++ + + G DD + KP + + + R A Sbjct: 64 VCRQIRDFSDVPVIMLTAKGEDMDKILGLEYGADDYITKPFNILEVKARMKAIMRRVAKK 123 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + S G +++ + R L +E +LE L N K ++ + + Sbjct: 124 DGMSASGKVVVKGDLKIDCESRRVFSGDRELNLTAKEFDLLELLAMNPNKVYSRESLLNI 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++G ++ + V+ HI +LR+K+ N V +K +GY Sbjct: 184 VWG-YEYPGDARTVDVHIRRLREKIEVNPSDPKYVYTKWGVGYYF 227 >gi|319939370|ref|ZP_08013730.1| DNA-binding response regulator [Streptococcus anginosus 1_2_62CV] gi|319811356|gb|EFW07651.1| DNA-binding response regulator [Streptococcus anginosus 1_2_62CV] Length = 233 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 46/232 (19%), Positives = 95/232 (40%), Gaps = 13/232 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + + + R D+ ++ L L Sbjct: 4 ILVVDDEKPISDIIKFNMVKEGYEVVTAFDGREALEMFEAERPDILILDLML--PEMDGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112 E+ R IR S VP+I +S S + + G DD + KP +RE + Sbjct: 62 EVARTIRKTSNVPIIVLSAKDSEFDKVIGLEIGADDYMTKPFSNRELQARVKAILRRTDL 121 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + + G +++ +D + GE L RE +L +L + G+ + + Sbjct: 122 TIENQEAEAAPTEIVIGDLQILTDAFVVKKHGEELDLTHREFELLHHLATHIGQVMTREH 181 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223 + ++G +D + V+ I +LR+K+ + + + ++R +GY + N Sbjct: 182 LLETVWG-YDYFGDVRTVDVTIRRLREKIEDIPSRPEYILTRRGVGYYMRNN 232 >gi|218294955|ref|ZP_03495809.1| two component transcriptional regulator, winged helix family [Thermus aquaticus Y51MC23] gi|218244863|gb|EED11387.1| two component transcriptional regulator, winged helix family [Thermus aquaticus Y51MC23] Length = 225 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 46/219 (21%), Positives = 91/219 (41%), Gaps = 4/219 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D V + G ++E S R D+ ++ L Sbjct: 4 ILLIEDDPEVARLLELELKEAGFAVEWAKSGVEGLIRHREKRPDLVVLDLGL--PDLDGG 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IRA P++ ++ +++ + G DD + KP H E+ + R + Sbjct: 62 EVARRIRATDDTPILVLTAQDAVERKVSLLSEGADDYLVKPFHPAEL-LARIQVQLRHRE 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + G + ++ R + + L +E +L LM G+ ++ +I ++G Sbjct: 121 GSEVLSVGELTLYPKRRQVFFREQEVRLSPKEFDLLALLMGRPGRVFSRQEIEEKVWGRP 180 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + NV++ H++ LR KLR + + + R LGY++ Sbjct: 181 -LGRDSNVLDVHVANLRAKLREAGAYGYLRTVRGLGYAL 218 >gi|326939521|gb|AEA15417.1| two-component response regulator vanR [Bacillus thuringiensis serovar chinensis CT-43] Length = 232 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 40/229 (17%), Positives = 83/229 (36%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +G + ++ E + ++ ++ ++ + Sbjct: 6 ILIVDDDKDIIQFINVNLKQEGFKVFSAHNGEEALEIINNNSIQLAILDIM--MPQMDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARVA 113 EL R IR +P++ +S S + F +G DD + KP E Sbjct: 64 ELCRRIREKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 123 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 +V + + + R + GE L + E IL + A R + +I Sbjct: 124 FNQNAPQVMEKKINIRGLEIDEVSRTVMLYGETMNLTKTEYDILHLMAAARNRVFTIEEI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + +++ N V HI++LR K+ + + +GY I+ Sbjct: 184 YESVWNERAYE-SNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIE 231 >gi|294339915|emb|CAZ88278.1| Transcriptional activator protein czcR [Thiomonas sp. 3As] Length = 242 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 47/222 (21%), Positives = 91/222 (40%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A G++G + L + D+ ++A L G Sbjct: 20 ILIVEDEAKTAAYLKRGLGENGFIADVAVDGTDGLHLALTQPYDLIVLDAML--PGRDGW 77 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + +RA P++ ++ + + + G DD + KP E+LARV ++ RR Sbjct: 78 SVLSELRARQTTPVLMLTARDGVADRVRGLELGADDYLVKPFAFSELLARVRSVLRRGVT 137 Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 RV + E G+ L +E +L L G+ +++T I ++ + Sbjct: 138 RLPEVMEVADLRVDMHRQRAERGGQRLALTPKEFALLALLSRRAGEVLSRTLIAEQVWDM 197 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + + NVV+ HI +LR KL + + R +GY ++ Sbjct: 198 -NFDSDTNVVDVHIRRLRSKLDEPFPAPLLHTVRGVGYVLEV 238 >gi|259046372|ref|ZP_05736773.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175] gi|259037009|gb|EEW38264.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175] Length = 220 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 38/220 (17%), Positives = 96/220 (43%), Gaps = 6/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D +++G + G ++ + + D+ ++ + Sbjct: 5 LLIVEDEEAIREGVREFLSEQGFTVFEACDGVEALEVFNRESVDLILLDIM--MPRKNGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ +R S VP++ ++ +T + F+ VD + KP + R+ A+ +R Sbjct: 63 EVLEEVRQKSNVPILMLTALQDEETQVKSFELLVDGYIQKPFSLMVLYKRIEALLKRHYG 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 V + V ++ + +E IL+ L+ + G+ ++++QI ++ Sbjct: 123 EVETWSYQDTSVNFTRFEAYVNNQLVEVTAKELSILKLLVKHEGQALSRSQILDHVWSNH 182 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ + VV+ +I +LRKKL+ D + + + +GY ++ Sbjct: 183 EDPPFDRVVDVYIKQLRKKLKL----DCIVTIKNVGYKLE 218 >gi|296135753|ref|YP_003642995.1| two component transcriptional regulator, winged helix family [Thiomonas intermedia K12] gi|295795875|gb|ADG30665.1| two component transcriptional regulator, winged helix family [Thiomonas intermedia K12] Length = 242 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 47/222 (21%), Positives = 94/222 (42%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A G++G + L + D+ ++A L G Sbjct: 20 ILIVEDEAKTAAYLKRGLGENGFIADVAVDGTDGLHLALTQPYDLIVLDAML--PGRDGW 77 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120 + +RA P++ ++ + + + G DD + KP E+LARV ++ R + Sbjct: 78 SVLSELRARQTTPVLMLTARDGVADRVRGLELGADDYLVKPFAFSELLARVRSVLRRGVT 137 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + E +RV + E G+ L +E +L L G+ +++T I ++ + Sbjct: 138 RMPDVMEVADLRVDMHRQRAERSGQRLALTPKEFALLALLSRRAGEVLSRTLIAEQVWDM 197 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + + NVV+ HI +LR KL + + R +GY ++ Sbjct: 198 -NFDSDTNVVDVHIRRLRSKLDEPFPAPLLHTVRGVGYVLEV 238 >gi|229105162|ref|ZP_04235813.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus Rock3-28] gi|228678343|gb|EEL32569.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus Rock3-28] Length = 230 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 42/228 (18%), Positives = 91/228 (39%), Gaps = 10/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D +++ +G + + E D+ ++ L Sbjct: 5 ILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIM--MPKLDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115 E+ RIIR S VP++ +S + G DD + KP E+ R + Sbjct: 63 EVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKASIRRSTK 122 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 Y + + + G + + E G L +E IL+ + N+ + K QI++ Sbjct: 123 YSTTETTEKMIQIGDLTIDPINFTVEKNGNPLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 ++ + ++NV+ H+ +LR+K+ + + + + +GY ++ Sbjct: 183 LVWNE-EYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLEV 229 >gi|207856439|ref|YP_002243090.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224584398|ref|YP_002638196.1| transcriptional regulator YedW [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|206708242|emb|CAR32542.1| response regulator [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224468925|gb|ACN46755.1| copper resistance protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 248 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 47/219 (21%), Positives = 93/219 (42%), Gaps = 3/219 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D + + G ++ L + ++ L G Sbjct: 25 ILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIML--PGLDGW 82 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R +R Q P+I ++ S++ + ++G +D + KP E+LARV A R+ Sbjct: 83 QVLRALRTAHQSPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHVP 142 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 R + + + + G+ L R+E +L L + G+ V +T I S ++G+ Sbjct: 143 VFTRLTINGLDMDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWGI- 201 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + E N V+ I +LR K+ + + + R +GY + Sbjct: 202 NFDSETNTVDVAIRRLRAKVDDPFEKKLIMTVRGMGYRL 240 >gi|163849376|ref|YP_001637420.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222527373|ref|YP_002571844.1| winged helix family two component transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163670665|gb|ABY37031.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222451252|gb|ACM55518.1| two component transcriptional regulator, winged helix family [Chloroflexus sp. Y-400-fl] Length = 230 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 86/224 (38%), Gaps = 9/224 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD V+ + G + + + R D+ ++ Sbjct: 5 ILIIDDHLNVRTMIADYLQEIGYRVVTASDGAEGLIIARRVRPDLVLLDIM--MPKLDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R Q P+I ++ + + G DD V KP +E++AR+ A+ RR Sbjct: 63 GFLQAYRREHQAPVILLTARIDETDKVVGLELGADDYVTKPFSLKELVARIRAVLRRTAA 122 Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + E P+R+ R V L E +L LMA+ G+ + Q+ Sbjct: 123 ARQPNEEQPLRIGNLELNRATRMVTVDERPIYLTPSEFALLALLMASPGRVYTREQLLEH 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219 + G E VE ++ HI LR+K+ + +++ +GY Sbjct: 183 LQGNSYEGVE-RTIDVHIRNLRRKIEPDPTNPTYIETVFGIGYR 225 >gi|328884621|emb|CCA57860.1| putative two-component system response regulator [Streptomyces venezuelae ATCC 10712] Length = 228 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 49/223 (21%), Positives = 93/223 (41%), Gaps = 5/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D ++ G + + E L R D+ ++ L G Sbjct: 7 LLLIEDDDAIRTALELSLSRQGHRVATAATGEDGLQLLREQRPDLVVLDVML--PGIDGF 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR Q+P+I ++ + +SG DD V KP+ R + AR+ A+ RR + Sbjct: 65 EVCRRIRRTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGER 124 Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + T + GE L E R+L L G+ +++ Q+ ++ Sbjct: 125 ESTDSATYGSLVIDRSAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVW-E 183 Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDW 222 D + +V++ + +LR K+ + + + R +GY +D Sbjct: 184 HDYLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRLDV 226 >gi|306833967|ref|ZP_07467091.1| response regulator [Streptococcus bovis ATCC 700338] gi|304423968|gb|EFM27110.1| response regulator [Streptococcus bovis ATCC 700338] Length = 236 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 51/232 (21%), Positives = 98/232 (42%), Gaps = 16/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G D+ ++ L L Sbjct: 4 ILIVDDEKPISDIIKFNLAKEGYETVTAFDGREAITKFEEENPDLIILDLML--PELDGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + +R S +P+I +S S + + G DD V KP +RE+LARV A RR + Sbjct: 62 EVAKEVRKTSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTEN 121 Query: 122 ------------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 SN+ G +++ D + +GE L RE +L +L + G+ + Sbjct: 122 IETAVAEENASASNSEITIGDLKILPDAFVAQKRGEDIELTHREFELLHHLATHMGQVMT 181 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + + ++G +D + V+ I +LR+K+ + + + ++R +GY + Sbjct: 182 REYLLETVWG-YDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYM 232 >gi|302671163|ref|YP_003831123.1| two component system response regulator [Butyrivibrio proteoclasticus B316] gi|302395636|gb|ADL34541.1| two component system response regulator [Butyrivibrio proteoclasticus B316] Length = 226 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 47/222 (21%), Positives = 91/222 (40%), Gaps = 7/222 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD ++ G D + ++ + + D+ ++ L E Sbjct: 6 LVVDDEKVIVKGIKFSLEQDDIIVDCAYDGQEALDKARANEYDIILLDVMLPI--MTGFE 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + IR S VP+I ++ + + G DD + KP + E+ AR+ AI RR + Sbjct: 64 VCQQIREFSNVPIIMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRASKN 123 Query: 123 NNRAETGPIRVFSDGRDPEVQG---EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + + + + RE +LE L +N GK ++ ++ + I+G Sbjct: 124 ADSKDVISYGDLKLNEEYRRVFVGSKEINVTSREYELLELLASNPGKVYSREELLTTIWG 183 Query: 180 LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + + V+ HI +LR+KL N V +K GY Sbjct: 184 T-EYPGDVRTVDVHIRRLREKLESNPSEPRYVRTKWGSGYYF 224 >gi|167624972|ref|YP_001675266.1| two component transcriptional regulator [Shewanella halifaxensis HAW-EB4] gi|167354994|gb|ABZ77607.1| two component transcriptional regulator, winged helix family [Shewanella halifaxensis HAW-EB4] Length = 229 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 33/224 (14%), Positives = 86/224 (38%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D +++ + G + + + + D+ ++ G + Sbjct: 5 ILIVEDELAIREMLTFVLEQHGFTTAAAEDYDSALAMLTEPYPDLVLLDWM--FPGGNGI 62 Query: 62 ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIY 116 +L + +R +P+I ++ + + + G DD + KP +E+ + Sbjct: 63 QLAKRLRQDEFTRHIPIIMLTARGEEEDKVRGLEVGADDFMTKPFSPKELVARIKAVMRR 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + +++ V +V + E R+L + M ++ + ++ Q+ Sbjct: 123 SAPTCLEEIIDVQGLQLDPVSHRVTVNDQVLDMGPTEFRLLHFFMTHQERVYSREQLLDN 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + VE+ V+ HI +LRK + + + R GY Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKAVTPSGHDRLIQTVRGAGYRF 225 >gi|78045890|ref|YP_362065.1| two-component system response regulator [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325927350|ref|ZP_08188603.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Xanthomonas perforans 91-118] gi|325928590|ref|ZP_08189775.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Xanthomonas perforans 91-118] gi|78034320|emb|CAJ21965.1| two-component system response regulator [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325541023|gb|EGD12580.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Xanthomonas perforans 91-118] gi|325542273|gb|EGD13762.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Xanthomonas perforans 91-118] Length = 227 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 54/219 (24%), Positives = 94/219 (42%), Gaps = 3/219 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + G S + + + D+ ++ L +G L+ Sbjct: 11 LIVEDEPRLAAVLGEYLHAAGYSHDWIADGAQALGAFRAQQPDLVLLDLMLPNRG--GLD 68 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +R S VP+I ++ L + G DD + KP RE++ARV A+ RR + Sbjct: 69 ICRDLRKESAVPVIMVTARVEEIDRLLGLEIGADDYICKPFSPREVVARVQAVLRRHRHD 128 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 + A + + D V G L + E R+L L A G+ ++ Q+ +Y Sbjct: 129 PHGAPAPGLHIDEDACRASVDGRALDLTQVEFRLLRTLAAAPGRVYSREQLMGRLY-ADH 187 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 V + V+SH+ LR+KL + G D V S GY + Sbjct: 188 RIVTDRTVDSHVKNLRRKLADAGGEDWVRSVYGAGYRFE 226 >gi|297158051|gb|ADI07763.1| two-component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 225 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 48/222 (21%), Positives = 93/222 (41%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D ++ G + + E L R D+ ++ L G Sbjct: 4 LLLIEDDDAIRTALELSLSRQGHRVATAATGEDGLKLLREQRPDLIVLDVML--PGIDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR Q+P+I ++ + +SG DD V KP+ R + AR+ A+ RR + Sbjct: 62 EVCRRIRRTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGER 121 Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 N + + + G+ L E R+L L G+ +++ Q+ ++ Sbjct: 122 EANDSASFGSLVIDRAAMTVTKNGQDLQLTPTELRLLLELSRRPGQALSRQQLLRLVW-E 180 Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 D + +V++ + +LR K+ + + + R +GY +D Sbjct: 181 HDYLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRLD 222 >gi|255526457|ref|ZP_05393368.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296184830|ref|ZP_06853241.1| regulatory protein VanR [Clostridium carboxidivorans P7] gi|255509839|gb|EET86168.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296050612|gb|EFG90035.1| regulatory protein VanR [Clostridium carboxidivorans P7] Length = 229 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 41/227 (18%), Positives = 89/227 (39%), Gaps = 9/227 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++D + + + + + + D+ ++ L L Sbjct: 4 ILIVEDDEDIRDILKIYLKAESFEIWEAENGKQAFEILEDKKPDLVILDLML--PDINGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILA------RVAAI 115 + + IR + P+I I+ + Q + G DD + KP + E++A R Sbjct: 62 NICKSIRTKYKYPIIMITAKTADQDKIIGLTYGADDYITKPFNPLEVMARVKAQLRRYKE 121 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 Y ++ + + R + G+ L E +LE L+ NRG+ ++ ++F Sbjct: 122 YGENTKEDSTIYYKGLILDRKSRQANLNGKELKLTPTEFNLLEILLLNRGQVLSGEKLFH 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221 + + N V HI LR+K+ + + + +GY I+ Sbjct: 182 LLREDEYYSKSTNTVTVHIRNLREKMEESFEHPEYIKTVWGVGYIIE 228 >gi|257790033|ref|YP_003180639.1| two component transcriptional regulator, winged helix family [Eggerthella lenta DSM 2243] gi|317489476|ref|ZP_07947986.1| response regulator receiver domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|325830166|ref|ZP_08163623.1| transcriptional regulatory protein ResD [Eggerthella sp. HGA1] gi|257473930|gb|ACV54250.1| two component transcriptional regulator, winged helix family [Eggerthella lenta DSM 2243] gi|316911405|gb|EFV33004.1| response regulator receiver domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|325487633|gb|EGC90071.1| transcriptional regulatory protein ResD [Eggerthella sp. HGA1] Length = 236 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 43/225 (19%), Positives = 89/225 (39%), Gaps = 8/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D ++D A + + + S D+ ++ L Sbjct: 8 ILLVEDEKAIRDAVTAYLERENYWVTAVGDGQEALEEFSKHHFDLVILDLML--PRVPGE 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYR 117 + R IR +S VP+I ++ ++ + + G DD + KP RE++AR ++ Sbjct: 66 RVCRAIRDNSDVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARARALLRRVHA 125 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + E G + + G V E L E ++L L G+ ++ ++ + Sbjct: 126 DSEPQREVLEFGELTIDVSGHKVLVNNEEIDLTASEFKLLTTLSRYPGRVYSRMELVEKV 185 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 G +D E ++SH+ LR K+ + + + +GY + Sbjct: 186 LG-YDFEGYERTIDSHVKNLRAKIGDNPRSPKWLHTVHGVGYRFE 229 >gi|187776697|ref|ZP_02993170.1| hypothetical protein CLOSPO_00212 [Clostridium sporogenes ATCC 15579] gi|187775356|gb|EDU39158.1| hypothetical protein CLOSPO_00212 [Clostridium sporogenes ATCC 15579] Length = 228 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 41/220 (18%), Positives = 88/220 (40%), Gaps = 3/220 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 L++D + I L +G ++ + + + D++ I+ L Sbjct: 4 IFLVEDDKAIGKNLILLLRSEGFTVTHAPTRSEALAALAGNKFDLALIDISL--PDGNGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + I+ +P+I ++ + + + G DD + KP RE++AR+ R+ Sbjct: 62 TVCTEIKETQDLPVIFLTASSDEASVVTGLNMGADDYITKPFRPRELIARIRTALRKSGR 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 S + E + V + G L E R+L + N + ++++ ++ Sbjct: 122 SPSAFEICGLHVDMASGIVKKDGSEVFLSALEYRLLLVFINNPKNIITRSRLLDELWDAA 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 E V +N + +I +LR+K+ N + + R GY + Sbjct: 182 GEFVNDNTLTVYIKRLREKIENNPASPQIILTVRGTGYRL 221 >gi|154687900|ref|YP_001423061.1| two-component response regulator [Bacillus amyloliquefaciens FZB42] gi|154353751|gb|ABS75830.1| two-component response regulator [Bacillus amyloliquefaciens FZB42] Length = 232 Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats. Identities = 41/228 (17%), Positives = 89/228 (39%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + D +G + + E + ++ + +V ++ L + Sbjct: 5 ILIVEDDQFISDMVSESLTKEGFEVTAAFNGEEALDILNTQKFEVILLDLML--PKIDGM 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH--------REILARVA 113 E R+IR+ S VP++ +S G DD ++KP I Sbjct: 63 ECLRMIRSKSMVPVLIMSAKDEDVDKALGLGLGADDYISKPFSMLEVIARIKATIRRERH 122 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + G + V G + E L +E IL+ ++N + K+Q+ Sbjct: 123 YKSSLSSKEEKIIKIGDLSVDLHGFSVKKFNEKINLTAKEFNILKLFISNPSQVYTKSQL 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220 + +++ + +ENV+ HI +LR+K+ + + + +GY + Sbjct: 183 YKSVW-EDEYHGDENVINVHIRRLREKIEDDPSHPMYIKTLWGIGYKL 229 >gi|315643933|ref|ZP_07897103.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] gi|315280308|gb|EFU43597.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] Length = 231 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 42/226 (18%), Positives = 81/226 (35%), Gaps = 9/226 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + ++G + + E ++ V + ++ ++ Sbjct: 5 LIVDDDKEISGLISIYLENEGYRVIQAHDGEEALLAMATNEGTVDLVILDVMMPRLNGID 64 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH--------REILARVAA 114 R IR S +P++ +S + +G DD + KP + + Sbjct: 65 TCRRIRETSSIPILMLSAKSEDMDKILGLMTGADDYMIKPFNPLELTTRVKTLLRRSTQY 124 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + +R + + + + G L RE IL L G+ + IF Sbjct: 125 NTELQQGHTDRIQIDGLDINRTTHEVTANGRSVSLTAREFEILYLLARQPGRIFSAEDIF 184 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ V N V HIS LR KL +LG+ + + +GY I Sbjct: 185 QQVWKEK-YYVSNNTVMVHISNLRDKLEKELGYKLIQTVWGVGYKI 229 >gi|222151606|ref|YP_002560762.1| alkaline phosphatase synthesis transcriptional regulatory protein [Macrococcus caseolyticus JCSC5402] gi|222120731|dbj|BAH18066.1| alkaline phosphatase synthesis transcriptional regulatory protein [Macrococcus caseolyticus JCSC5402] Length = 237 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 43/230 (18%), Positives = 94/230 (40%), Gaps = 13/230 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + G + E S D+ ++ L +E Sbjct: 6 LVVDDEQSIVTLLQYNLEQSGFEVITAFDGEEGLSKIFSEDPDIVVLDLML--PKMDGVE 63 Query: 63 LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARVA 113 + + +R +QVP++ ++ + + G DD + KP RE+ A Sbjct: 64 VCKAVRSEKNQVPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVTARLKAILRRSQA 123 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + N G +++ + + GE+ L +E +L YL+ +G+ + + + Sbjct: 124 LRQHESEKENKEIIIGKLKILPEHFEAYRNGELIDLTPKEFELLIYLIERQGRVITREHM 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDW 222 ++++ ++ A + +V+ HIS LR+K+ + + R LGY +D+ Sbjct: 184 LNSVW-NYEFAGDSRIVDVHISHLREKIEENPKQPQYIKTVRGLGYKLDY 232 >gi|28377004|ref|NP_783896.1| response regulator [Lactobacillus plantarum WCFS1] gi|28269835|emb|CAD62732.1| response regulator [Lactobacillus plantarum WCFS1] Length = 235 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 46/229 (20%), Positives = 92/229 (40%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + E D+ ++ L L Sbjct: 4 ILVVDDEKPISDIMKFNLTKEGYEVHVAADGEEALQKVDEVHPDLILLDLML--PKMDGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R + +P+I ++ S + + G DD V KP +RE++ARV A RR Sbjct: 62 EVARQVRKNYDMPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQGT 121 Query: 122 SNNRAETGPIRVF---------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + + +GE L RE +L YL + G+ + + Sbjct: 122 PSAQPAEVEENSDIEIGDLVIHPEAYMVSKRGENIELTHREFELLHYLAQHIGQVMTREH 181 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + ++G +D + V+ + +LR+K+ + + ++R +GY + Sbjct: 182 LLQTVWG-YDYFGDVRTVDVTVRRLREKVEDNPSHPKWLVTRRGVGYYL 229 >gi|307151820|ref|YP_003887204.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 7822] gi|306982048|gb|ADN13929.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7822] Length = 250 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 47/232 (20%), Positives = 94/232 (40%), Gaps = 16/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQS-------SAREDVSAIEAFLI 54 ++++D +++D + ++G ++ + L D+ ++ L Sbjct: 21 ILVVEDEDVIRDMVVLALEEEGYEVKSASDGRSALELLQGSDAVESEKLFDLLVLDLML- 79 Query: 55 GKGEKVLELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113 L++ R+I + +P++ +S S + + G DD + KP RE++AR Sbjct: 80 -PSVNGLDICRLIRYQGNTIPILILSAKVSETDRVLGLEVGADDYLTKPFSMRELVARCR 138 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQG----EVFPLPRRERRILEYLMANRGKRVA 169 A+ RR S A E + E L +E R+LE M+ + + Sbjct: 139 ALLRRQSFSTISANPVRKFRDIMLYTQECRVLVRGEEINLSPKEFRLLELFMSYPRRVWS 198 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + Q+ ++G D + V+ HI LR+KL + + + + R GY Sbjct: 199 REQLIEQVWG-PDFLGDTKTVDVHIRWLREKLERDPSQPEYLITVRGFGYRF 249 >gi|332971320|gb|EGK10283.1| DNA-binding response regulator [Desmospora sp. 8437] Length = 229 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 47/225 (20%), Positives = 92/225 (40%), Gaps = 8/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ + G + + D+ ++ L Sbjct: 4 ILIVDDEKKIREVLSSYLSHAGYRTLEAGTGRKALDIHREVAVDLIILDLML--PDLSGE 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR S VP++ ++ + L+ G DD V KP RE++ARV AI RR Sbjct: 62 EVCREIRRQSAVPILMLTAKVEERHRLEGLAIGADDYVIKPFSPREVVARVQAILRRSAD 121 Query: 122 S----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + G + V + + G+ L E R+++ L N G+ ++ ++ + Sbjct: 122 DLLAERVSFQHGDLIVDTRTKTVCKAGQPVHLTPIEYRLIQILARNPGRPFSREELVEKL 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 +G FD + +E ++ H+ LR K+ + + GY + Sbjct: 182 FG-FDYSGDERTIDQHVKNLRNKVEPDPKNPTYFKTVFGFGYRFE 225 >gi|154504864|ref|ZP_02041602.1| hypothetical protein RUMGNA_02374 [Ruminococcus gnavus ATCC 29149] gi|153794747|gb|EDN77167.1| hypothetical protein RUMGNA_02374 [Ruminococcus gnavus ATCC 29149] Length = 223 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 40/221 (18%), Positives = 84/221 (38%), Gaps = 10/221 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD L+ G D + ++ E + D+ ++ L Sbjct: 6 ILVVDDEKLIVKGIRFSLEQDDMEVDCAYDGEEALQYAKNCEYDLVLLDVML--PKMDGF 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH------HREILARVAAI 115 ++ + IR S +P++ ++ + + G DD + KP + + + R A Sbjct: 64 QVCQAIREFSDMPIVMLTAKSEDMDKILGLEYGADDYITKPFNILEVKARIKAIMRRTAR 123 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + G +R+ + R + L +E +LE L N K ++ + Sbjct: 124 KEESAQTAKILVKGNMRIDCESRRVFIGEREINLTAKEYDVLELLAMNPNKVYSRENLLD 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRF 215 ++G+ D + V+ HI +LR+K+ N V +K Sbjct: 184 LVWGV-DYPGDARTVDVHIRRLREKIELNPSEPKYVHTKWG 223 >gi|83859329|ref|ZP_00952850.1| phosphate regulon response regulator PhoB [Oceanicaulis alexandrii HTCC2633] gi|83852776|gb|EAP90629.1| phosphate regulon response regulator PhoB [Oceanicaulis alexandrii HTCC2633] Length = 228 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 53/222 (23%), Positives = 96/222 (43%), Gaps = 4/222 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61 ++++D + + +G + E L + DV ++ L G +V Sbjct: 6 LVVEDEDALSELLSYNLKKEGFRVSLAADGEEAMMLVEERQPDVVVLDWMLPKISGIEVC 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 R +P+I ++ + D+G DD + KP +E+ ARV A+ RR++ Sbjct: 66 RRLRSRHETRNLPIIMLTARGEEADRIRGLDTGADDYIVKPFLMKELFARVRAVLRRIRP 125 Query: 122 --SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + G I + L E R+L+YLM + G+ ++ Q+ A++G Sbjct: 126 GLAEDSVTVGDITIDRVAHRVVRSDLEIHLGPTEFRLLDYLMQHPGRVFSREQLLDAVWG 185 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D VE V+ HI +LRK L DP+ + R GY+++ Sbjct: 186 -SDVYVEARTVDVHIGRLRKALSAGGEHDPIRTVRSAGYALN 226 >gi|194397670|ref|YP_002037262.1| VncR response regulator TCS10 [Streptococcus pneumoniae G54] gi|194357337|gb|ACF55785.1| VncR response regulator TCS10 [Streptococcus pneumoniae G54] Length = 218 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 51/220 (23%), Positives = 102/220 (46%), Gaps = 6/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++++G D G + L+ + +V+ + + L Sbjct: 3 ILIVEDEEMIREGVSDYLTDCGYETIEAADGQEA--LEQFSSYEVALVLLDIQMPKLNGL 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ IR SQVP++ ++ + + + F S D + KP + RV AI++R Sbjct: 61 EVLAEIRKTSQVPVLMLTAFQDEEYKMSAFASLADGYLEKPFSLSLLKVRVDAIFKRYYD 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + +V + + G+ P+ +E IL+YL+ N G+ + ++QI A++ Sbjct: 121 TGRIFSYKDTKVDFESYSASLAGQEVPINAKELEILDYLVKNEGRALTRSQIIDAVWKAT 180 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 DE + V++ +I KLRKKL D + + R +GY ++ Sbjct: 181 DEVPFDRVIDVYIQKLRKKLDL----DCILTVRNVGYKLE 216 >gi|158336368|ref|YP_001517542.1| two component transcriptional regulator [Acaryochloris marina MBIC11017] gi|158306609|gb|ABW28226.1| two component transcriptional regulator, winged helix family [Acaryochloris marina MBIC11017] Length = 237 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 46/228 (20%), Positives = 96/228 (42%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD A ++ G + E + D+ ++ Sbjct: 8 ILVADDEASIRRILETRLSMMGFVVITAADGEEALQVFQHQEPDLIILDVM--MPKLNGY 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + +R S VP+I ++ + + + G DD + KP +E+ +R+ I RR+ Sbjct: 66 QVCQSLRQESDVPIIMLTALSDVADRITGLEMGADDYMVKPFSPKELESRIRCILRRITK 125 Query: 122 SNNRAETG-------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 S++ + + ++ R E L E +LE L++ G+ +++ + Sbjct: 126 SHSSHHKSAGVIQVGHLEIDTNKRQVYKDKERIQLTHLEFNLLELLVSRPGEPISRVEFL 185 Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 ++G D ++ VV+ H+S+LR KL+ D + S R +GY+I Sbjct: 186 QKVWGYSPDGKIDTRVVDVHMSRLRNKLKEDTEEPDLILSVRGVGYAI 233 >gi|147669577|ref|YP_001214395.1| two component transcriptional regulator [Dehalococcoides sp. BAV1] gi|146270525|gb|ABQ17517.1| two component transcriptional regulator, winged helix family [Dehalococcoides sp. BAV1] Length = 227 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 47/223 (21%), Positives = 88/223 (39%), Gaps = 8/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD + + A +G + + D+ ++ L Sbjct: 5 ILIADDEKRIAEILQAYLEREGFRVIATYDGKTALAKFHEENPDLIILDLML--PEISGW 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R IR S+VP+I ++ L L + G DD + KP +E++ARV RR + Sbjct: 63 DVCREIRKESRVPIIMLTARDELTDKLIGLEIGADDYMTKPFESKELVARVKVQLRRSEY 122 Query: 122 SNNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + + + R ++ G+ L E IL L + G+ ++ QI + Sbjct: 123 PPSPDSALVIDQLEIDQERRLVKIDGKTVDLTATEFDILISLAVSPGRVFSRMQILDKL- 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 E ++SHI LRKK+ L + + +GY + Sbjct: 182 -GEAYEGYERTIDSHIKNLRKKIEPNLESPTYILTVHGVGYKM 223 >gi|182436428|ref|YP_001824147.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|291447257|ref|ZP_06586647.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|178464944|dbj|BAG19464.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|291350204|gb|EFE77108.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 225 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 50/222 (22%), Positives = 94/222 (42%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D ++ G + + E L R D+ ++ L G Sbjct: 4 LLLIEDDDAIRTALELSLSRQGHRVATAATGEDGLELLREQRPDLVVLDVML--PGIDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120 E+ R IR Q+P+I ++ + +SG DD V KP+ R + AR+ A+ R + Sbjct: 62 EVCRRIRRTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGER 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 S + A G + + GE L E R+L L G+ +++ Q+ ++ Sbjct: 122 ESTDSATFGNVVIDRSAMTVTKDGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVW-E 180 Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 D + +V++ + +LR K+ + + + R +GY +D Sbjct: 181 HDYLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRLD 222 >gi|291451644|ref|ZP_06591034.1| two-component system response regulator [Streptomyces albus J1074] gi|291354593|gb|EFE81495.1| two-component system response regulator [Streptomyces albus J1074] Length = 225 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 50/222 (22%), Positives = 93/222 (41%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D ++ G + + E L R D+ ++ L G Sbjct: 4 LLLIEDDDAIRTALELSLTRQGHRVATAATGEEGLTLLREQRPDLIVLDVML--PGIDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR Q+P+I ++ + +SG DD V KP+ R + AR+ A+ RR + Sbjct: 62 EVCRRIRRTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGER 121 Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 +N A + GE L E R+L L G+ +++ Q+ ++ Sbjct: 122 ESNDAAVFGSLVIDRAAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVW-E 180 Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 D + +V++ + +LR K+ + + + R +GY +D Sbjct: 181 HDYLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRLD 222 >gi|257867536|ref|ZP_05647189.1| transcriptional regulator [Enterococcus casseliflavus EC30] gi|257873865|ref|ZP_05653518.1| transcriptional regulator [Enterococcus casseliflavus EC10] gi|257877616|ref|ZP_05657269.1| transcriptional regulator [Enterococcus casseliflavus EC20] gi|257801592|gb|EEV30522.1| transcriptional regulator [Enterococcus casseliflavus EC30] gi|257808029|gb|EEV36851.1| transcriptional regulator [Enterococcus casseliflavus EC10] gi|257811782|gb|EEV40602.1| transcriptional regulator [Enterococcus casseliflavus EC20] Length = 235 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 49/230 (21%), Positives = 92/230 (40%), Gaps = 14/230 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +G + + + L S D ++ L + Sbjct: 4 ILVVDDEPSIVTLLTFNLEKEGYQVVSASDGQKAFDLALSKPFDFIILDVML--PNLDGI 61 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ + +R P++ ++ + + G DD + KP RE+LAR+ AI+RRL+ Sbjct: 62 EITKKLRQEKIETPILVLTAKDDPIDRILGLEIGADDYLTKPFSPREVLARMKAIFRRLE 121 Query: 121 VSNNRAETGPI---------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 E + V GE L +E +L Y M +G+ + + Sbjct: 122 PRQQAREEDQPAEILQIGGIQADLTNFQVSVDGEKIFLTPKEFELLVYFMKRKGRVIDRD 181 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + + I+ FD + +V+ HIS LR+KL + + + + R GY Sbjct: 182 TLLNRIW-NFDFDGQSRIVDVHISHLREKLEADPKRPEYLVTVRGFGYKF 230 >gi|254479525|ref|ZP_05092845.1| response regulator receiver domain protein [Carboxydibrachium pacificum DSM 12653] gi|214034545|gb|EEB75299.1| response regulator receiver domain protein [Carboxydibrachium pacificum DSM 12653] Length = 223 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 49/221 (22%), Positives = 100/221 (45%), Gaps = 6/221 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++I+D ++D ++G + + + L + + D+ I ++ Sbjct: 5 LVIEDEEGMRDILKTYLENNGYQVLTAKNGKEGLDLFNENK-DIKIILLDIMLPDISGWS 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRLK 120 L + IR S+VP++ I+ L F+ G DD V KP RE+ + Sbjct: 64 LLKTIRETSKVPVMMITARGEEYDKLLGFELGADDYVVKPFSPREVVARVKAILSRTYGS 123 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + E I + R+ V G+ L +E +L+ L+ N+GK V++ + + ++G Sbjct: 124 QEDGKTEYQGIVMDVHSREVTVDGKKIELTPKEFDLLKLLLDNKGKVVSREKCLNEVWG- 182 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +D + V++HI +LR+KL K + + + +GY ++ Sbjct: 183 YDFYGDLRTVDTHIKQLREKLGEK--RNLIKTVWGIGYKLE 221 >gi|220913188|ref|YP_002488497.1| two component transcriptional regulator, winged helix family [Arthrobacter chlorophenolicus A6] gi|219860066|gb|ACL40408.1| two component transcriptional regulator, winged helix family [Arthrobacter chlorophenolicus A6] Length = 224 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 47/220 (21%), Positives = 86/220 (39%), Gaps = 5/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + +DG + S+R D+ ++ L G + Sbjct: 5 ILVVDDDEALAEMIGIVLRNDGFEPVFCADGAQALDIFRSSRPDLVLLDLML--PGVDGI 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +RA S VP++ ++ + +SG DD V KP E++ARV A R Sbjct: 63 EVCRQVRAESDVPIVMLTAKADTSDVVRGLESGADDYVPKPFKPAELVARVRARLRPGDQ 122 Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 I + G E L E +L L + + + ++G Sbjct: 123 KAPETLRIADITIDVAGHTVSRGSERISLTPLEFDLLVALARKPWQVFTRELLLEQVWG- 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219 + A + +V H+ +LR K+ + V + R +GY Sbjct: 182 YRHAADTRLVNVHVQRLRSKIEQDPEAPEVVLTVRGVGYK 221 >gi|318061516|ref|ZP_07980237.1| two-component system response regulator [Streptomyces sp. SA3_actG] gi|333024459|ref|ZP_08452523.1| putative phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. Tu6071] gi|332744311|gb|EGJ74752.1| putative phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. Tu6071] Length = 263 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 50/227 (22%), Positives = 96/227 (42%), Gaps = 15/227 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + D A +G ++ + + D+ ++ L G LE Sbjct: 40 LVVEDDPTIVDAVAARLRAEGFLVQTAQDGPSAVETAEAWQPDLLVLDVML--PGFDGLE 97 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R ++AH VP++ ++ L G DD + KP RE+ ARV + RR++ + Sbjct: 98 VCRRVQAHRPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMREVAARVHVLLRRVERA 157 Query: 123 NNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 A T V R V+GE L E +L L +++ Q+ Sbjct: 158 ALAASTPRSGVLRLGELEVDHAQRRVRVRGEDVHLTPTEFDLLVCLAGTPRAVLSREQLL 217 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + ++ D + V+SHI LR+K+ G + + + +GY+++ Sbjct: 218 AEVWDWADASG-TRTVDSHIKALRRKI----GAERIRTVHGVGYALE 259 >gi|315455530|emb|CAY26034.2| PhoP protein [Streptomyces sp. ATCC 55098] Length = 226 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 52/224 (23%), Positives = 95/224 (42%), Gaps = 8/224 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D D + +G + + D+ ++ L G E Sbjct: 5 LVVEDEESFSDALSYMLRKEGFEVAIAATGPDGLDEFERNGADLVLLDLML--PGLPGTE 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +R S VP+I ++ S + + G DD V KP RE++AR+ A+ RR Sbjct: 63 VCRQLRGRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRRGEP 122 Query: 123 NNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 GP+R+ D V G LP +E +LE L+ N G+ + + Q+ ++ Sbjct: 123 EEVTPAALEAGPVRMDVDRHVVTVGGGKVDLPLKEFDLLEMLLRNAGRVLTRMQLIDRVW 182 Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 G D + ++ H+ +LR K+ + + + R LGY + Sbjct: 183 GA-DYVGDTKTLDVHVKRLRAKIEPDPGAPRHLVTVRGLGYKFE 225 >gi|159038626|ref|YP_001537879.1| two component transcriptional regulator [Salinispora arenicola CNS-205] gi|157917461|gb|ABV98888.1| two component transcriptional regulator, winged helix family [Salinispora arenicola CNS-205] Length = 230 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 54/224 (24%), Positives = 94/224 (41%), Gaps = 9/224 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + DG + DV ++ L G +E Sbjct: 6 LVVDDERSLAKVVASYLARDGYQVRCVFDGPAALDAAREDEPDVVVLDLML--PGLDGVE 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +R S +I ++ L G DD + KP RE++ARVAA+ RR + Sbjct: 64 VCRRLRTFSDCYVIMLTARTEEADKLTGLGVGADDYLTKPFSPRELVARVAAMQRRPRQP 123 Query: 123 NNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 R E P R R+ + G PL R E +L L A +++ ++ +A+ Sbjct: 124 RGRPEPAPRRFGPLEVDVPAREARLDGAPVPLTRTEFDLLAVLSARPNVVLSRAELITAV 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 +G +E++V+ HI LR+KL + + + R +GY + Sbjct: 184 WGEG-WVGDEHLVDVHIGHLRRKLGDAPARPRFILTVRGIGYRM 226 >gi|307706668|ref|ZP_07643474.1| response regulator [Streptococcus mitis SK321] gi|307617912|gb|EFN97073.1| response regulator [Streptococcus mitis SK321] Length = 235 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 48/234 (20%), Positives = 96/234 (41%), Gaps = 15/234 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + + + + D+ ++ L L Sbjct: 4 ILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQYEAEQPDIIILDLML--PEIDGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-------- 113 E+ + IR S VP+I +S S + + G DD V KP +RE+ ARV Sbjct: 62 EVAKTIRKTSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRTDL 121 Query: 114 ---AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + + G + + D + GE L RE +L +L ++ G+ + + Sbjct: 122 VSVDNQESDEKKTQPLQIGDLEIVPDAYVAKKYGEELDLTHREFELLYHLASHIGQVITR 181 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223 + ++G +D + V+ I +LR+K+ + + + ++R +GY + N Sbjct: 182 EHLLETVWG-YDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMRNN 234 >gi|46579496|ref|YP_010304.1| phosphate regulon transcriptional regulator PhoB [Desulfovibrio vulgaris str. Hildenborough] gi|120602954|ref|YP_967354.1| two component transcriptional regulator [Desulfovibrio vulgaris DP4] gi|46448910|gb|AAS95563.1| phosphate regulon transcriptional regulator PhoB [Desulfovibrio vulgaris str. Hildenborough] gi|120563183|gb|ABM28927.1| two component transcriptional regulator, winged helix family [Desulfovibrio vulgaris DP4] gi|311233311|gb|ADP86165.1| two component transcriptional regulator, winged helix family [Desulfovibrio vulgaris RCH1] Length = 229 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 38/227 (16%), Positives = 82/227 (36%), Gaps = 13/227 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + G + + + ++ L G Sbjct: 6 ILVVEDDEDILQLLRFTLEAAGFEVVTAATGRDGLESAQRHVPGLVLLDLML--PGMSGF 63 Query: 62 ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-----ILARVA 113 ++ R ++ VP+I ++ + + G DD V KP RE Sbjct: 64 DVCRELKRTPATEHVPVIMLTARGEEVDRIVGLELGADDYVIKPFSPRELVLRIRAVLKR 123 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + + + + EV GE L E R+L L+ NRG+ + Q+ Sbjct: 124 VTGAQEPAPRGQWNVDGLFLDEEAHRVEVDGEEALLTATEFRLLAELVRNRGRVRTRDQL 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + ++G ++ V++H+ +LR+K+ +++ R +GY Sbjct: 184 LNTVWG-YEFEGYARTVDTHVRRLRQKIGRFAA--MIETIRGVGYRF 227 >gi|30264605|ref|NP_846982.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47530074|ref|YP_021423.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49187428|ref|YP_030680.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|65321903|ref|ZP_00394862.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bacillus anthracis str. A2012] gi|165871505|ref|ZP_02216152.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167635564|ref|ZP_02393876.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|167641577|ref|ZP_02399824.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170688250|ref|ZP_02879460.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|170708682|ref|ZP_02899120.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|177653111|ref|ZP_02935398.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190566979|ref|ZP_03019895.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|227817319|ref|YP_002817328.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|229602420|ref|YP_002868816.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|254686972|ref|ZP_05150830.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254724536|ref|ZP_05186319.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254736642|ref|ZP_05194348.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254741680|ref|ZP_05199367.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254754723|ref|ZP_05206758.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|254757555|ref|ZP_05209582.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|30259263|gb|AAP28468.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47505222|gb|AAT33898.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49181355|gb|AAT56731.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|164712802|gb|EDR18332.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167510462|gb|EDR85861.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|167528984|gb|EDR91739.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170126362|gb|EDS95251.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|170667756|gb|EDT18509.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|172081635|gb|EDT66706.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190561970|gb|EDV15939.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|227007249|gb|ACP16992.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|229266828|gb|ACQ48465.1| DNA-binding response regulator [Bacillus anthracis str. A0248] Length = 230 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 43/228 (18%), Positives = 92/228 (40%), Gaps = 10/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D +++ +G + + E D+ ++ L Sbjct: 5 ILLVEDDLSIQEMVEKYLVKEGFQVTIASDGEEGVDTYLKGSFDLIILDIM--MPKLDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115 E+ RIIR S VP++ +S + G DD + KP E+ R + Sbjct: 63 EVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 Y + + + G + + E G+ L +E IL+ + N+ + K QI++ Sbjct: 123 YSATETTEKMIQIGDLTIDPINFTVEKNGKPLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 I+ + ++NV+ H+ +LR+K+ + + + + +GY ++ Sbjct: 183 LIWNE-EYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLEV 229 >gi|11467627|ref|NP_050679.1| Ycf27 [Guillardia theta] gi|6136611|sp|O78428|YCF27_GUITH RecName: Full=Probable transcriptional regulator ycf27; AltName: Full=OmpR-like protein gi|3602952|gb|AAC35613.1| ompR homolog [Guillardia theta] Length = 254 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 48/228 (21%), Positives = 90/228 (39%), Gaps = 12/228 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD A ++ G + + E L DV ++ Sbjct: 18 LIVDDEASIRKILETRLSMIGYFVVTASDGEEALNLFHQEMPDVVILDIM--MPKLDGYG 75 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI------- 115 + + IR S VP+I ++ + + + G DD V KP +E+ AR+ A+ Sbjct: 76 VCQEIRKDSDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRAVLRRTNKA 135 Query: 116 -YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + ++ + + + R E L E +LE L++ G+ ++ I Sbjct: 136 AFSSHLTTSGIINFNFLTIDLNKRQIYKDNERIRLTGMEFSLLELLISRSGQPFSRADIL 195 Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++G + V+ VV+ HIS+LR KL + D + + R GY Sbjct: 196 QEVWGYTPERHVDTRVVDVHISRLRAKLETDPSNPDLILTARGTGYLF 243 >gi|148263635|ref|YP_001230341.1| two component transcriptional regulator [Geobacter uraniireducens Rf4] gi|146397135|gb|ABQ25768.1| two component transcriptional regulator, winged helix family [Geobacter uraniireducens Rf4] Length = 225 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 40/225 (17%), Positives = 87/225 (38%), Gaps = 7/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++I+D + + +G S D+ ++ L G G ++ Sbjct: 4 ILVIEDERDLAELIAFNLEKEGYRPLIALDGVSGLEAARSNPPDLILLDLMLPGLMGTEI 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYR 117 +L + + +P+I ++ + F+ G DD + KP RE + V Sbjct: 64 CKLLKKNEKTAAIPIIMLTAKGEEIDRVVGFEVGADDYMVKPFSTRELLLRVKAVLRRTM 123 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 K G + + ++ V GE L E ++L L G+ ++ + + Sbjct: 124 PEKAQGKCITIGLVTIDTERHMVSVAGEEIVLTTTEFKLLLNLAERLGRVQSRDLLLQNV 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +G ++ + V++H+++LR KL + + + R GY ++ Sbjct: 184 WG-YNYVGDTRTVDTHVTRLRTKLGEAG--EMIKTVRGFGYKMEE 225 >gi|229828450|ref|ZP_04454519.1| hypothetical protein GCWU000342_00511 [Shuttleworthia satelles DSM 14600] gi|229793044|gb|EEP29158.1| hypothetical protein GCWU000342_00511 [Shuttleworthia satelles DSM 14600] Length = 229 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 45/225 (20%), Positives = 90/225 (40%), Gaps = 10/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD L+ G D + ++ + D+ ++ L E Sbjct: 6 LVVDDEKLIVKGIRFSLEQDEMKVDCAYDGQEALDKAREGDYDLILLDVML--PRMDGFE 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH------HREILARVAAIY 116 + R +R S VP++ ++ + + G DD + KP + + + R Sbjct: 64 VCRAVREFSNVPIVMLTAKGDDMDKIMGLEYGADDYITKPFNILEVKARIKAILRRVRSR 123 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + S N ++G + + +D R + GE L +E +L L+ + GK ++ + Sbjct: 124 EAEEDSGNVIKSGDVSMDTDRRSLRIAGEDINLTSKEFDMLLLLVNHPGKVYSRDSLLHT 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 I+G D + V+ HI +LR+K+ V +K +GY Sbjct: 184 IWG-SDYPGDARTVDVHIRRLREKIEPSPSEPRYVHTKWGVGYYF 227 >gi|229048244|ref|ZP_04193812.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus AH676] gi|228722969|gb|EEL74346.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus AH676] Length = 230 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 42/228 (18%), Positives = 92/228 (40%), Gaps = 10/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D +++ +G + + E D+ ++ L Sbjct: 5 ILLVEDDLSIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIM--MPKLDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115 E+ RIIR S VP++ +S + G DD + KP E+ R + Sbjct: 63 EVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 Y + + + G + + E G+ L +E IL+ + N+ + K QI++ Sbjct: 123 YSATETTEKMIQIGDLTIDPINFTVEKNGKPLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 ++ + ++NV+ H+ +LR+K+ + + + + +GY ++ Sbjct: 183 LVWNE-EYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLEV 229 >gi|229816268|ref|ZP_04446577.1| hypothetical protein COLINT_03319 [Collinsella intestinalis DSM 13280] gi|229808119|gb|EEP43912.1| hypothetical protein COLINT_03319 [Collinsella intestinalis DSM 13280] Length = 250 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 47/225 (20%), Positives = 94/225 (41%), Gaps = 8/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D ++D A +G + G + + D+ ++ L Sbjct: 19 ILLVEDEKAIRDAVAAYLEREGYWVVGVGDGQSAVEEFEKHQFDLIVLDLML--PKLSGE 76 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R IR S VP+I ++ ++ + + G DD + KP RE++ARV A++RR Sbjct: 77 RVCRAIRDTSDVPIIMLTAKGEVEDRIIGLELGADDYLIKPFSPRELVARVRALFRRAHQ 136 Query: 122 SNNRAETGPIR----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 ++ + G V+G+ L E ++L L + G+ + ++ + Sbjct: 137 ADEPQVEVLDFGDLVIDISGHKILVEGKEVDLTASEFKLLTTLARHPGRVYNRMELVEKV 196 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 G +D E ++SH+ LR KL + + + +GY + Sbjct: 197 LG-YDFEGYERTIDSHVKNLRAKLGDDPKKPKWLYTVHGVGYRFE 240 >gi|20807256|ref|NP_622427.1| response regulator [Thermoanaerobacter tengcongensis MB4] gi|20515763|gb|AAM24031.1| Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Thermoanaerobacter tengcongensis MB4] Length = 224 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 54/221 (24%), Positives = 105/221 (47%), Gaps = 6/221 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++I+D ++D ++G + + + L + + D+ I ++ Sbjct: 6 LVIEDEEGMRDILKTYLENNGYQVLTAENGKEGLDLFNENK-DIKIILLDIMLPDISGWS 64 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI--YRRLK 120 L + IR S+VP++ I+ L F+ G DD V KP RE++ARV AI Sbjct: 65 LLKTIRETSKVPVMMITARGEEYDKLLGFELGADDYVVKPFSPREVVARVKAILSRTYGS 124 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + E I + R+ V G+ L +E +L+ L+ N+GK V++ + + ++G Sbjct: 125 QDDGKTEYQGIVMDVHSREVTVDGKKIELTPKEFDLLKLLLDNKGKVVSREKCLNEVWG- 183 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +D + V++HI +LR+KL K + + + +GY ++ Sbjct: 184 YDFYGDLRTVDTHIKQLREKLGEK--RNLIKTVWGIGYKLE 222 >gi|313902445|ref|ZP_07835847.1| two component transcriptional regulator, winged helix family [Thermaerobacter subterraneus DSM 13965] gi|313467243|gb|EFR62755.1| two component transcriptional regulator, winged helix family [Thermaerobacter subterraneus DSM 13965] Length = 232 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 42/225 (18%), Positives = 86/225 (38%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ +G ++ SL + ++ L L Sbjct: 6 ILVVDDEPGIREVCRLYLEREGFAVREAASLAGARAALRGEAPALVVLDLML--PDGSGL 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 +L R + P++ ++ + + G DD V KP RE++ARV A+ RR + Sbjct: 64 DLCRELVEAG-TPVVCLTARADETDRVLGLELGADDYVTKPFSPRELVARVRAVLRRARA 122 Query: 122 SNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + G V R V G +E +L + + + + Q+ + Sbjct: 123 AKEPAPVTVRFGRCAVDLAARRLWVGGREVACTPKEFDLLALFVTHPHRVFTRQQLLERV 182 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 + F A + V+ H+ +LR+K+ + + + +GY D Sbjct: 183 WD-FSYAGDTRTVDVHVQRLRRKIEPDPQHPRYLKTVWSVGYRFD 226 >gi|239626272|ref|ZP_04669303.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239520502|gb|EEQ60368.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 226 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 49/222 (22%), Positives = 101/222 (45%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++ + G ++ E + + D++ + ++ Sbjct: 6 ILVVDDEARMRKLVRDFLTNKGFTVIEAGDGEEAVDTFFAQK-DIALVLLDVMMPKMDGW 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120 E+ + IR +SQVP+I ++ + L F GVD+ ++KP + ++ARV AI R Sbjct: 65 EVLKTIRKYSQVPVIMLTARSEERDELQGFSLGVDEYISKPFSPKILVARVDAILRRSNV 124 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 VS G I + + G L +E +L Y + N+G +++ +I + ++ Sbjct: 125 VSTENMNVGGICIDKAAHQVTIDGREIELSYKEFELLSYFVENQGIALSREKILNNVW-N 183 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D + +++H+ KLR K+ K D + + +GY + Sbjct: 184 YDYFGDARTIDTHVKKLRSKMGEKG--DYIKTIWGMGYKFEV 223 >gi|222150338|ref|YP_002559491.1| hypothetical protein MCCL_0088 [Macrococcus caseolyticus JCSC5402] gi|222119460|dbj|BAH16795.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402] Length = 223 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 50/218 (22%), Positives = 100/218 (45%), Gaps = 3/218 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++ F + ++ + L + D+ ++ G Sbjct: 5 ILVVDDEAAIRCEVKEGFLRHSFQVYVASNGDEAINLLDNESIDLCIVDIM--MPGIDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 +L I+ Q+P+I ++ +L F +G DD V KP E++ R AI +R + Sbjct: 63 QLCEQIKQDYQLPVIMLTARDALGDKRIAFQAGSDDYVTKPFEIEEVIFRAQAILKRYEK 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + E G + + +D + ++ E LPR+E +L YL+ + K + Q+ I+G + Sbjct: 123 AVEKVEFGKLIIDADSYEVTMEDESLYLPRKEFELLYYLVRHYPKVATREQLIEEIWG-Y 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 D +E V+ H+ ++RK+L + + R +GY Sbjct: 182 DFDGDERTVDVHVKRIRKRLDAFDSGVEIQTVRGVGYK 219 >gi|154498537|ref|ZP_02036915.1| hypothetical protein BACCAP_02527 [Bacteroides capillosus ATCC 29799] gi|150272605|gb|EDM99790.1| hypothetical protein BACCAP_02527 [Bacteroides capillosus ATCC 29799] Length = 234 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 46/231 (19%), Positives = 89/231 (38%), Gaps = 13/231 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + D G +G + L D+ ++ L Sbjct: 5 ILIVEDEKNIVDILSFNLGREGYETLEAYDGQSGLQLALEQDPDLVLLDLML--PKMNGF 62 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ R IR P+I ++ + + G DD + KP RE+LARV A RR + Sbjct: 63 DVCRSIRAEGKNTPVIMLTAREEENDKVMGLELGADDYITKPFSMRELLARVKANIRRRE 122 Query: 121 VSNNRAETG---------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 ++ N I V D G+ L +RE +L +L A GK ++ Sbjct: 123 MAGNAPAAPVGSNRLEAGRISVDQDLMVAYKDGKALDLTQREYELLRFLAARPGKVFSRE 182 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221 + ++ + V+ + +LR+K+ + + ++R GY ++ Sbjct: 183 ALMENVWNYEGYVGDVRAVDVAVRRLREKVEDDPAQPQIIVTRRGQGYLLN 233 >gi|319949856|ref|ZP_08023868.1| DNA-binding response regulator MtrA [Dietzia cinnamea P4] gi|319436481|gb|EFV91589.1| DNA-binding response regulator MtrA [Dietzia cinnamea P4] Length = 226 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 43/220 (19%), Positives = 91/220 (41%), Gaps = 5/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A + + + +G E + + D+ ++ L G+ + Sbjct: 5 ILVVDDDAALAEMLTIVLRGEGFETEIVGDGVQAIETFRAVQPDLVLLDLML--PGKSGI 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120 ++ R IRA S+VP++ ++ + +SG DD + KP +E++AR+ A R Sbjct: 63 DVCREIRAESRVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARIRARLRRGED 122 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + G + + G PL E +L L + + + ++G Sbjct: 123 EPSETLHIGDVTIDVPAHTVTRDGTPIPLTPLEFDLLVELARKPRQVFTREVLLEHVWG- 181 Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219 + + + +V H+ +LR K+ + + V + R +GY Sbjct: 182 YRHSADTRLVNVHVQRLRAKIEKDPENPEVVLTVRGVGYK 221 >gi|302521900|ref|ZP_07274242.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. SPB78] gi|302430795|gb|EFL02611.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. SPB78] Length = 267 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 50/227 (22%), Positives = 96/227 (42%), Gaps = 15/227 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + D A +G ++ + + D+ ++ L G LE Sbjct: 44 LVVEDDPTIVDAVAARLRAEGFLVQTAQDGPSAVETAEAWQPDLLVLDVML--PGFDGLE 101 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R ++AH VP++ ++ L G DD + KP RE+ ARV + RR++ + Sbjct: 102 VCRRVQAHRPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMREVAARVHVLLRRVERA 161 Query: 123 NNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 A T V R V+GE L E +L L +++ Q+ Sbjct: 162 ALAASTPRSGVLRLGELEVDHAQRRVRVRGEDVHLTPTEFDLLVCLAGTPRAVLSREQLL 221 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + ++ D + V+SHI LR+K+ G + + + +GY+++ Sbjct: 222 AEVWDWADASG-TRTVDSHIKALRRKI----GAERIRTVHGVGYALE 263 >gi|255527025|ref|ZP_05393916.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296186975|ref|ZP_06855375.1| regulatory protein VanR [Clostridium carboxidivorans P7] gi|255509281|gb|EET85630.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296048413|gb|EFG87847.1| regulatory protein VanR [Clostridium carboxidivorans P7] Length = 232 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 40/229 (17%), Positives = 89/229 (38%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ ++G + + + S + + ++ + Sbjct: 6 ILVVDDEKEIRNLIGIYLENEGYKVIKASDGCEALKVLKSQQVHLIILDIM--MPNMDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH--------REILARVA 113 E IR H +P+I +S + +G DD + KP + ++ Sbjct: 64 EACIKIREHKNMPIIMLSAKGEDMDKIMGLTTGADDYITKPFNPLELLARVKSQLRRYTK 123 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 ++++ E + + + +V ++ L RRE ILE L NRG + +I Sbjct: 124 LNNAMQNINSDIIEIDDLTINVSTHEVKVGEKLINLTRREFDILELLAKNRGIVFSTEKI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 + ++ + +N V HI K+R+K+ + + +GY I+ Sbjct: 184 YERVWNE-EFYQSDNTVMVHIRKIREKIEENSRKPKYIKTVWGVGYKIE 231 >gi|15616589|ref|NP_244895.1| two-component response regulator [Bacillus halodurans C-125] gi|10176652|dbj|BAB07746.1| two-component response regulator [Bacillus halodurans C-125] Length = 236 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 46/226 (20%), Positives = 99/226 (43%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G ++ + + D+ ++ L + + Sbjct: 6 ILVVDDEKPIADILKFNLEKEGFTVICAYDGAEAVEQVNQEKPDLILLDIML--PNKDGM 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R ++P+I ++ S + + G DD V KP RE+LARV A RR + Sbjct: 64 EVCREVRKQFEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQT 123 Query: 122 SNNRAETGPIR------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 S + + + + + +GE L RE ++ YL + G+ + + + Sbjct: 124 SGDDQLSYKEISVGDLSIHPEAYLVKKRGESIELTHREFELIHYLAKHLGQVMTREHLLQ 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 A++G +D + V+ + +LR+K+ + + ++R +GY + Sbjct: 184 AVWG-YDYFGDVRTVDVTVRRLREKVEDNPSYPTWIITRRGVGYYL 228 >gi|319949621|ref|ZP_08023661.1| two-component response regulator RegX3 [Dietzia cinnamea P4] gi|319436708|gb|EFV91788.1| two-component response regulator RegX3 [Dietzia cinnamea P4] Length = 229 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 51/227 (22%), Positives = 98/227 (43%), Gaps = 11/227 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + D L +G + S D+ ++ L G + Sbjct: 5 LIVEDEDSLADPLAFLLRKEGFEVGVAGDGPSALESFESEGADIVLLDLML--PGMSGTD 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + +R S VP+I ++ S + + G DD V KP RE++AR+ A+ RR + Sbjct: 63 VCKRLRMTSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGAEA 122 Query: 123 NNRAETG-------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 P+R+ + V+G LP +E +LEYL+ N G+ + + Q+ Sbjct: 123 EAEPVEEIGVLESGPVRMDIERHTVMVRGAAVTLPLKEFDLLEYLLRNSGRVLTRGQLID 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 ++G D + ++ H+ +LR K+ + + + R LGY + Sbjct: 183 RVWG-SDYVGDTKTLDVHVKRLRSKIETDPGKPVHLVTVRGLGYKFE 228 >gi|229155571|ref|ZP_04283679.1| DNA-binding response regulator [Bacillus cereus ATCC 4342] gi|228627889|gb|EEK84608.1| DNA-binding response regulator [Bacillus cereus ATCC 4342] Length = 225 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 35/222 (15%), Positives = 93/222 (41%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ +G + D+ ++ Sbjct: 5 ILIVDDDPHIRELVSVFLEREGFQTYDAIDGLDALQKIDEVKVDMVILDIM--MPNMDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ +R + +P++ ++ + F G DD + KP E++ RV A+ +R ++ Sbjct: 63 DVCFELRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 122 Query: 122 SNNRAETGPIR-VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + +++ + + + + LP +E +L L + G+ ++ Q+ ++G Sbjct: 123 TVSQSIQVGNVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG- 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D E ++ H+++LR+K + + + + R LGY ++ Sbjct: 182 YDFEGNERTLDVHMNRLREKFQEEKSRFSIKTIRGLGYRLEV 223 >gi|222150271|ref|YP_002559424.1| DNA-binding response regulator [Macrococcus caseolyticus JCSC5402] gi|222119393|dbj|BAH16728.1| DNA-binding response regulator [Macrococcus caseolyticus JCSC5402] Length = 233 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 48/226 (21%), Positives = 93/226 (41%), Gaps = 12/226 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 V++DD + D +G + + L + D+ ++ L G + Sbjct: 5 IVVVDDEKPIADILEFNLKKEGYEVHVAYDGDDAVELIYDIQPDIVLLDIML--PGRDGM 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R +P+I ++ S + + G DD V KP RE++ARV A RR Sbjct: 63 EVCREVRKKYDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYS 122 Query: 122 SNN--------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 I V+ + + +G L RE + YL + G+ + + + Sbjct: 123 QTQSEEKEESTNIVIKDIVVYPEAYSIKKRGIDIELTHREFELFHYLAKHIGQVMTREHL 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGY 218 ++G +D + V+ I +LR+K+ + + + ++R +GY Sbjct: 183 LQTVWG-YDYFGDVRTVDVTIRRLREKIEDDASHPEYIVTRRGVGY 227 >gi|148556479|ref|YP_001264061.1| two component transcriptional regulator [Sphingomonas wittichii RW1] gi|148501669|gb|ABQ69923.1| two component transcriptional regulator, winged helix family [Sphingomonas wittichii RW1] Length = 232 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 50/222 (22%), Positives = 100/222 (45%), Gaps = 4/222 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVL 61 +L++D A + + + +E E L D+ ++ + G G +V Sbjct: 7 LLVEDDAALAELVSWHLEREDFEVERTADGEEAILLARETPPDLVLLDWMIEGVSGIEVC 66 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 R + + VP+I ++ + + ++G DD V KP RE++ARV A+ RR++ Sbjct: 67 RRLRRLADTANVPIIMLTARGEEEDRVRGLETGADDYVTKPFSPRELVARVGAVLRRVRP 126 Query: 122 --SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + R I + + G L E R+L++ + + G+ ++ ++ +++G Sbjct: 127 ALAGERLSYADIEMDTASHRVRRGGSPISLGPTEFRLLKHFLEHPGRVFSRERLLDSVWG 186 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D +E V+ HI +LRK + D + + R GY++D Sbjct: 187 R-DSDIEPRTVDVHIRRLRKAINLADAPDLIRTVRSAGYALD 227 >gi|118479688|ref|YP_896839.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|196044910|ref|ZP_03112144.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|225866511|ref|YP_002751889.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|118418913|gb|ABK87332.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|196024398|gb|EDX63071.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|225790658|gb|ACO30875.1| DNA-binding response regulator [Bacillus cereus 03BB102] Length = 230 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 42/228 (18%), Positives = 91/228 (39%), Gaps = 10/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D +++ +G + + E D+ ++ L Sbjct: 5 ILLVEDDLSIQEMVEKYLVKEGFQVTIASDGEEGVNTYLKGSFDLIILDIM--MPKLDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115 E+ RIIR S VP++ +S + G DD + KP E+ R + Sbjct: 63 EVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 Y + + + G + + G+ L +E IL+ + N+ + K QI++ Sbjct: 123 YSATETTEKMIQIGDLTIDPINFTVGKNGKPLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 I+ + ++NV+ H+ +LR+K+ + + + + +GY ++ Sbjct: 183 LIWNE-EYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLEV 229 >gi|327404293|ref|YP_004345131.1| winged helix family two component transcriptional regulator [Fluviicola taffensis DSM 16823] gi|327319801|gb|AEA44293.1| two component transcriptional regulator, winged helix family [Fluviicola taffensis DSM 16823] Length = 229 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 42/223 (18%), Positives = 90/223 (40%), Gaps = 9/223 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 +L+DD + + +G + + + D+ ++ + G + Sbjct: 9 ILLVDDEKDILEFLQYNLEREGYKVFVASDGLEGVEMAQKVSPDLILMDVMMPRMDGIEA 68 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117 + R + ++ + + F++G DD + KPI R ++++V Sbjct: 69 CQTIRQDLQLKSPLIAFLTSRAEDYSQVAGFEAGADDYITKPIRPRLLVSKVEALLRRAG 128 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 R+ +T I V + + E LP++E ++E L + GK + QI + + Sbjct: 129 RMNGGEPEIKTSSITVNREKFLVYMNEEEIQLPKKEFELIELLASRPGKVFTREQILTTV 188 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G + V E ++ HI KLR+KL + + + +GY+ Sbjct: 189 WG-DETIVGERTIDVHIRKLREKLGES----YIRTIKGVGYTF 226 >gi|309812580|ref|ZP_07706325.1| sensory transduction protein RegX3 [Dermacoccus sp. Ellin185] gi|308433431|gb|EFP57318.1| sensory transduction protein RegX3 [Dermacoccus sp. Ellin185] Length = 226 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 45/225 (20%), Positives = 91/225 (40%), Gaps = 8/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + +G + D+ ++ L G + Sbjct: 4 ILIVEDEESYSEPLAYMLKKEGYEAFVAATGPEGIDTFERGGADLVLLDVML--PGMSGV 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117 ++ R +R+ S VP+I ++ S + + G DD V KP R I A + Sbjct: 62 DVCRELRSRSSVPIIMLTAKDSEIDKVVGLEMGADDYVTKPYSGRELLARIKAVLRRRGE 121 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 ++ G + + + V G+ +P +E +LE LM N G+ + + Q+ + Sbjct: 122 AEAGESDELVVGRVAMDVERHVVTVGGKGVAMPLKEFELLEMLMRNEGRVLTRMQLIDRV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221 +G D + ++ HI +LR K+ G + + R LGY ++ Sbjct: 182 WG-SDYVGDTKTLDVHIKRLRAKIEPDPGLPQHILTVRGLGYKLE 225 >gi|315221424|ref|ZP_07863345.1| response regulator receiver domain protein [Streptococcus anginosus F0211] gi|315189543|gb|EFU23237.1| response regulator receiver domain protein [Streptococcus anginosus F0211] Length = 233 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 46/232 (19%), Positives = 94/232 (40%), Gaps = 13/232 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + + + R D+ ++ L L Sbjct: 4 ILVVDDEKPISDIIKFNMVKEGYEVVTAFDGREALEMFEAERPDILILDLML--PEMDGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112 E+ R IR S VP+I +S S + + G DD + KP +RE + Sbjct: 62 EVARTIRKTSNVPIIVLSAKDSEFDKVIGLEIGADDYMTKPFSNRELQARVKAILRRTDL 121 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + G +++ +D + GE L RE +L +L + G+ + + Sbjct: 122 TIENQEAEAEPKEIVIGDLQILTDAFVVKKHGEELDLTHREFELLHHLATHIGQVMTREH 181 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223 + ++G +D + V+ I +LR+K+ + + + ++R +GY + N Sbjct: 182 LLETVWG-YDYFGDVRTVDVTIRRLREKIEDIPSRPEYILTRRGVGYYMRNN 232 >gi|295106285|emb|CBL03828.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Gordonibacter pamelaeae 7-10-1-b] Length = 236 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 44/225 (19%), Positives = 90/225 (40%), Gaps = 8/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D ++D A + + + S D+ ++ L Sbjct: 8 ILLVEDEKAIRDAVTAYLERENYWVTAVGDGQEALEEFSKHHFDLVILDLML--PRVPGE 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYR 117 + R IR +S VP+I ++ ++ + + G DD + KP RE++AR ++ Sbjct: 66 RVCRAIRDNSDVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARARALLRRVHA 125 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + E G + + G V GE L E ++L L G+ ++ ++ + Sbjct: 126 DSEPQREVLEFGELTIDVSGHKVLVNGEEIDLTASEFKLLTTLSRYPGRVYSRMELVEKV 185 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 G +D E ++SH+ LR K+ + + + +GY + Sbjct: 186 LG-YDFEGYERTIDSHVKNLRAKIGDNPRSPKWLHTVHGVGYRFE 229 >gi|229118027|ref|ZP_04247387.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus Rock1-3] gi|228665476|gb|EEL20958.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus Rock1-3] Length = 230 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 42/228 (18%), Positives = 91/228 (39%), Gaps = 10/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D +++ +G + + E D+ ++ L Sbjct: 5 ILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIM--MPKLDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115 E+ RIIR S VP++ +S + G DD + KP E+ R + Sbjct: 63 EVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 Y + + + G + + E G L +E IL+ + N+ + K QI++ Sbjct: 123 YSTTETTEKMIQIGDLTIDPINFTVEKNGNPLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 ++ + ++NV+ H+ +LR+K+ + + + + +GY ++ Sbjct: 183 LVWNE-EYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLEV 229 >gi|254555220|ref|YP_003061637.1| response regulator [Lactobacillus plantarum JDM1] gi|300769135|ref|ZP_07079024.1| response regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308179221|ref|YP_003923349.1| response regulator [Lactobacillus plantarum subsp. plantarum ST-III] gi|254044147|gb|ACT60940.1| response regulator [Lactobacillus plantarum JDM1] gi|300493375|gb|EFK28554.1| response regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308044712|gb|ADN97255.1| response regulator [Lactobacillus plantarum subsp. plantarum ST-III] Length = 235 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 46/229 (20%), Positives = 92/229 (40%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + E D+ ++ L L Sbjct: 4 ILVVDDEKPISDIMKFNLTKEGYEVHVAADGEEALQKVDEVHPDLILLDLML--PKMDGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R + +P+I ++ S + + G DD V KP +RE++ARV A RR Sbjct: 62 EVARQVRKNYDMPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQGA 121 Query: 122 SNNRAETGPIRVF---------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + + +GE L RE +L YL + G+ + + Sbjct: 122 PSAQPAEVEENSDIEIGDLVIHPEAYMVSKRGENIELTHREFELLHYLAQHIGQVMTREH 181 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + ++G +D + V+ + +LR+K+ + + ++R +GY + Sbjct: 182 LLQTVWG-YDYFGDVRTVDVTVRRLREKVEDNPSHPKWLVTRRGVGYYL 229 >gi|297201979|ref|ZP_06919376.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] gi|197712640|gb|EDY56674.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] Length = 225 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 50/222 (22%), Positives = 93/222 (41%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D ++ G + + E L R D+ ++ L G Sbjct: 4 LLLIEDDDAIRTALELSLTRQGHRVSTAATGEDGLKLLREQRPDLIVLDVML--PGIDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR Q+P+I ++ + +SG DD V KPI R + AR+ A+ RR + Sbjct: 62 EVCRRIRRTDQLPIILLTARNDDIDVVVGLESGADDYVVKPIQGRVLDARIRAVLRRGER 121 Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + A + + GE L E R+L L G+ +++ Q+ ++ Sbjct: 122 ESTDAASFGSLVIDRAAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVW-E 180 Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 D + +V++ + +LR K+ + + + R +GY +D Sbjct: 181 HDYLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRLD 222 >gi|258512232|ref|YP_003185666.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478958|gb|ACV59277.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 221 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 52/220 (23%), Positives = 98/220 (44%), Gaps = 5/220 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + + GV ++ E S D+ ++ L G ++ Sbjct: 4 LIVEDEPGLVEFLRLELELSGVEVDVAMDGETALERARSEPYDLLLVDIVL--PGMSGVD 61 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R +R S VP++ ++ ++ + D+G DD + KP E+ AR+ AI RR +V+ Sbjct: 62 LCREVRRFSNVPIMMLTARGAVADRVGGLDAGADDYLVKPFAIEELWARIRAIRRRYEVN 121 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 G V D +G+ L RE +L YL+ N + ++ ++ ++G F Sbjct: 122 GAPFRFGEATVHLDAHRVVYRGQEVDLTAREYDLLLYLLRNVNRTCSRQELLERVWG-FQ 180 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + NVV+ +I LR+KL + + R GY ++ Sbjct: 181 APGDTNVVDVYIGYLRQKL--DPERRYIKTVRGQGYRLEV 218 >gi|212634120|ref|YP_002310645.1| transcriptional regulatory protein [Shewanella piezotolerans WP3] gi|212555604|gb|ACJ28058.1| Response regulator receiver:Transcriptional regulatory protein [Shewanella piezotolerans WP3] Length = 229 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 33/224 (14%), Positives = 86/224 (38%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D +++ + G + + + + D+ ++ G + Sbjct: 5 ILIVEDELAIREMLTFVLEQHGFTTTAAEDYDSALDMLTEPYPDLVLLDWM--FPGGSGI 62 Query: 62 ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIY 116 +L + +R +P+I ++ + + + G DD + KP +E+ + Sbjct: 63 QLAKRLRQDEFTRHIPIIMLTARGEEEDKVRGLEVGADDFITKPFSPKELVARIKAVMRR 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + +++ V +V + E R+L + M + + ++ Q+ Sbjct: 123 AAPTCLEDPIDVQGLQLDPVSHRVTVGEQVLDMGPTEFRLLHFFMTHPERVYSREQLLDN 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + VE+ V+ HI +LRK + + + R GY Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKAVTLSGHDRLIQTVRGAGYRF 225 >gi|167040839|ref|YP_001663824.1| two component transcriptional regulator [Thermoanaerobacter sp. X514] gi|300914874|ref|ZP_07132190.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter sp. X561] gi|307723892|ref|YP_003903643.1| winged helix family two component transcriptional regulator [Thermoanaerobacter sp. X513] gi|166855079|gb|ABY93488.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter sp. X514] gi|300889809|gb|EFK84955.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter sp. X561] gi|307580953|gb|ADN54352.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter sp. X513] Length = 224 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 53/222 (23%), Positives = 103/222 (46%), Gaps = 7/222 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++I+D ++D ++G + + + ++ + D+S I ++ Sbjct: 5 LVIEDEEGMRDILKTYLENNGYEVLVAENGKIGLEYFNNNK-DISIILLDIMLPDISGWS 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRRL 119 L + IR S+VP++ I+ L F+ G DD V KP +E++ARV + Sbjct: 64 LLKTIREKSKVPVMMITARGEEYDKLLGFELGADDYVVKPFSPKEVIARVKAILSRTYGA 123 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + E I + R+ V GE L +E +L+ L+ N+GK V++ + + ++G Sbjct: 124 SEEEGKTEYEGISINVSSREVTVDGEKIDLTPKEFDLLKLLIDNKGKVVSREKCLNEVWG 183 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +D + V++HI +LR+KL K + + +GY +D Sbjct: 184 -YDFYGDLRTVDTHIKQLREKLGEK--RKLIKTVWGIGYKLD 222 >gi|89054785|ref|YP_510236.1| two component transcriptional regulator [Jannaschia sp. CCS1] gi|88864334|gb|ABD55211.1| two component transcriptional regulator, winged helix family [Jannaschia sp. CCS1] Length = 228 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 43/221 (19%), Positives = 85/221 (38%), Gaps = 4/221 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVL 61 ++++D ++ +G + + + DV ++ L G +V Sbjct: 8 LVVEDEPAQREVLAYNIRAEGFDVVTAAAGDEALVAVRETPPDVIVLDWMLPHVSGIEVC 67 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119 ++ ++P+I +S + ++G DD + KP E+ R R Sbjct: 68 RQLKMGSETKKIPVIMLSARSEDTDKVRGLETGADDYITKPYSVAELLARLRTQLRRVRP 127 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 R E I + G+ L E R+L M G+ ++ Q+ ++G Sbjct: 128 STVAERLEYEDIAIDLTEHRVYRGGDTLSLGPTEFRLLSAFMERPGRVWSREQLLDRVWG 187 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D V+ V+ H+ +LRK L+ DP+ + R GY++ Sbjct: 188 R-DIYVDSRTVDVHVGRLRKALKVGEAGDPIRTVRGAGYAL 227 >gi|116669349|ref|YP_830282.1| two component transcriptional regulator [Arthrobacter sp. FB24] gi|116609458|gb|ABK02182.1| two component transcriptional regulator, winged helix family [Arthrobacter sp. FB24] Length = 239 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 95/224 (42%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ G + + D++ ++ L Sbjct: 13 LLVVDDEPNIRELLSTSLRFAGFEVVSAGNGRDALAAAELHAPDLAVLDVML--PDMDGF 70 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R +RA P++ ++ + + G DD V KP E++AR+ A+ RR + Sbjct: 71 TVTRRLRASGKHFPVLFLTAKDDTEDKVTGLTVGGDDYVTKPFSLDEVVARIRAVLRRTQ 130 Query: 121 VSNNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + D + G V L E ++L YLM N + ++K+QI + Sbjct: 131 PLIDDDAVIRVDDLELDDDAHEVRRGGTVIELSPTEFKLLRYLMLNPNRVLSKSQILDHV 190 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + +D + ++VES+IS LR+K+ + + +KR +GY + Sbjct: 191 W-EYDFNGDASIVESYISYLRRKVDIDPDAPALIQTKRGVGYVL 233 >gi|229032183|ref|ZP_04188158.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus AH1271] gi|228729140|gb|EEL80141.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus AH1271] Length = 230 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 43/228 (18%), Positives = 92/228 (40%), Gaps = 10/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D +++ +G + + E D+ ++ L Sbjct: 5 ILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIM--MPKLDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115 E+ RIIR S VP++ +S + G DD + KP E+ R + Sbjct: 63 EVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 Y + + + G + + E G+ L +E IL+ + N+ + K QI+S Sbjct: 123 YSATEETEKMIQIGDLTIDPINFTVEKNGKSLKLTLKEFEILKLFVKNQNRVFTKAQIYS 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 ++ + ++NV+ H+ +LR+K+ + + + + +GY ++ Sbjct: 183 LVWNE-EYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLEV 229 >gi|229028114|ref|ZP_04184260.1| Two-component response regulator [Bacillus cereus AH1271] gi|228733205|gb|EEL84041.1| Two-component response regulator [Bacillus cereus AH1271] Length = 233 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 46/230 (20%), Positives = 88/230 (38%), Gaps = 11/230 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ ++G + E L + ++ + Sbjct: 6 ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEKNEVHLVVLDIM--MPKVDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + +R ++P+I +S + +G DD V KP + E++AR+ + RR Sbjct: 64 HMCMKVRESKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMK 123 Query: 122 SNNRAETG-------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N A +++ V GE L RE ILE L N G + QI+ Sbjct: 124 MNGFAIQNEDELEIGEMKINISTHKVIVDGEEVKLTPREFSILELLARNPGMVFSAEQIY 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDWN 223 ++ +N V HI K+R+K+ + + +GY I+ + Sbjct: 184 EKVWNERSFQ-SDNTVMVHIRKVREKIEENPRKPIYIKTVWGVGYKIEKD 232 >gi|229178308|ref|ZP_04305678.1| Two-component response regulator vanR [Bacillus cereus 172560W] gi|228605187|gb|EEK62638.1| Two-component response regulator vanR [Bacillus cereus 172560W] Length = 242 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 40/229 (17%), Positives = 83/229 (36%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +G + ++ E + ++ ++ ++ + Sbjct: 16 ILIVDDDQDIVQFIKVNLMQEGFKVFSAHNGEEALEIINNNSIQLAILDIM--MPQMDGI 73 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARVA 113 EL R IR +P+ +S S + F +G DD + KP E Sbjct: 74 ELCRRIREKHSLPITFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 133 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 ++V + + + R + GE L + E IL + A R + +I Sbjct: 134 FNQNAVQVMEKKINIRGLEIDEASRTVMLYGETMNLTKTEYDILHLMAAARNRVFTIEEI 193 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + +++ N V HI++LR K+ + + +GY I+ Sbjct: 194 YESVWNERAYE-SNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIE 241 >gi|210634653|ref|ZP_03298205.1| hypothetical protein COLSTE_02129 [Collinsella stercoris DSM 13279] gi|210158725|gb|EEA89696.1| hypothetical protein COLSTE_02129 [Collinsella stercoris DSM 13279] Length = 239 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 42/225 (18%), Positives = 88/225 (39%), Gaps = 8/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D ++D A +G + G + + D+ ++ L Sbjct: 8 ILLVEDEKAIRDAVAAYLEREGYWVVGVGDGQSAVEEFEKHQFDLIVLDLML--PKLSGE 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117 + R IR S VP+I ++ ++ + + G DD + KP R + A + Sbjct: 66 RVCRAIRDTSDVPIIMLTAKGEVEDRIIGLELGADDYLIKPFSPRELVARVRALFRRTHL 125 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + G + + G V+G+ L E ++L L + G+ + ++ + Sbjct: 126 ADEPQVEVLDFGDLVIDISGHKILVEGKEVDLTASEFKLLTTLARHPGRVYNRMELVEKV 185 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 G +D E ++SH+ LR KL + + + +GY + Sbjct: 186 LG-YDFEGYERTIDSHVKNLRAKLGDDPKKPKWLYTVHGVGYRFE 229 >gi|167464300|ref|ZP_02329389.1| two component transcriptional regulator, winged helix family protein [Paenibacillus larvae subsp. larvae BRL-230010] Length = 227 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 50/227 (22%), Positives = 92/227 (40%), Gaps = 10/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++++ ++G + + + L + ++ Sbjct: 5 ILVVEDEHILREIIKDYLLNEGYQVLEAINGKEALTLFEENEVHLVILDIM--MPELDGW 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R IR S +P+I ++ TL F+ G DD V KP +LAR + Sbjct: 63 SVCRRIRKTSNIPVIMLTARADEDDTLLGFELGADDYVTKPFSPPILLARAKRLLESRYA 122 Query: 122 SNNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + I V R +V G+ L E IL YLM N+G + + Q+ + Sbjct: 123 IEEETNGNSLSSCGIHVDFPSRTVKVDGKDINLTYTEFEILTYLMHNQGIVITREQLITK 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 I+G ++ + ++ V SHI LR KL +K + + GY + N Sbjct: 183 IWG-YEFSGDDRTVNSHIRNLRTKLGDKS--KCIITVVRAGYKFEGN 226 >gi|313636362|gb|EFS02144.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Listeria seeligeri FSL S4-171] Length = 240 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 45/233 (19%), Positives = 96/233 (41%), Gaps = 16/233 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A + G + L S + D+ ++ L + Sbjct: 8 ILVVDDEASIVTLLQFNIEKAGFEVVTAEDGSAGYELALSEKPDLIVLDLML--PEMDGI 65 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ + +R + VP++ ++ + + G DD + KP RE++AR+ AI RR + Sbjct: 66 EVTKKLRQNKVDVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTE 125 Query: 121 VSNNRAETGPI-----------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 E ++ + + + ++ L +E +L +L +RGK + Sbjct: 126 GKAEVIEENTEEVEATILIGDLKILPESYEVYLHDDLLDLTPKEFELLLFLANHRGKVFS 185 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 + Q+ ++ +D E +V+ H+S LR K+ + + + R GY ++ Sbjct: 186 RDQLLDTVW-NYDYVGETRIVDVHVSHLRDKIEIDTKQPKYIKTIRGFGYKME 237 >gi|307332098|ref|ZP_07611186.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] gi|306882240|gb|EFN13338.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] Length = 246 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 47/227 (20%), Positives = 94/227 (41%), Gaps = 15/227 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + D A +G ++ + + D+ ++ L G LE Sbjct: 23 LVVEDDPTIVDAIAARLRAEGFQVQTAGDGPAAVDTAEAWQPDLLVLDVML--PGFDGLE 80 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R ++A VP++ ++ L G DD + KP RE+ ARV + RR++ + Sbjct: 81 VCRRVQARRPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRVERA 140 Query: 123 NNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 A T + R V+G L E +L L +++ Q+ Sbjct: 141 ALAAHTPRSGILRLGELEIDHAQRRVRVRGSDVHLTPTEFDLLVCLANTPRAVLSREQLL 200 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + ++ D + V+SHI LR+K+ G + + + +GY+++ Sbjct: 201 AEVWDWADASG-TRTVDSHIKALRRKI----GAERIRTVHGVGYALE 242 >gi|291165916|gb|EFE27963.1| DNA-binding response regulator YycF [Filifactor alocis ATCC 35896] Length = 230 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 46/226 (20%), Positives = 89/226 (39%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + D +G + D+ ++ L Sbjct: 5 ILIIEDEKPISDIVKFNLKREGYDIITAFDGLDGYQKGIQENVDLILLDIML--PSMNGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R IR S VP+I ++ + + G DD + KP RE++ARV A RR + Sbjct: 63 DVCRHIREKSSVPIIMVTAKEEEVDKILGLELGADDYITKPFSLRELIARVKANIRRTSM 122 Query: 122 SNNR------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 NN + + + + V L RE +L++L + ++ Q+ Sbjct: 123 PNNNSAESDLIQHKNLVIDTSKYSVTKNDTVLELTVREYELLKFLAVQPNQVFSREQLLK 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220 ++G ++ + V+ I +LR+KL + + +KR +GY Sbjct: 183 QVWG-YEYYGDIRTVDVTIRRLREKLEDDASNPTYILTKRGVGYFF 227 >gi|229159425|ref|ZP_04287444.1| Two-component response regulator [Bacillus cereus R309803] gi|228624055|gb|EEK80862.1| Two-component response regulator [Bacillus cereus R309803] Length = 233 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 46/230 (20%), Positives = 88/230 (38%), Gaps = 11/230 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ ++G + E L + ++ + Sbjct: 6 ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIM--MPKVDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + +R ++P+I +S + +G DD V KP + E++AR+ + RR Sbjct: 64 HMCMKVRESKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMK 123 Query: 122 SNNRAETG-------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N A +++ V GE L RE ILE L N G + QI+ Sbjct: 124 MNGFAIQNEDELEIGEMKINISTHKVIVDGEEVKLTPREFSILELLARNPGMVFSAEQIY 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDWN 223 ++ +N V HI K+R+K+ + + +GY I+ + Sbjct: 184 EKVWNERSFQ-SDNTVMVHIRKVREKIEENPRKPIYIKTVWGVGYKIEKD 232 >gi|242281151|ref|YP_002993280.1| transcriptional regulator [Desulfovibrio salexigens DSM 2638] gi|242124045|gb|ACS81741.1| two component transcriptional regulator, winged helix family [Desulfovibrio salexigens DSM 2638] Length = 230 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 38/227 (16%), Positives = 82/227 (36%), Gaps = 13/227 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + G + D+ ++ L G L Sbjct: 6 ILVVEDHNDTIELLKYNLTSSGYEVVTAMDGHKALDQARKENPDLILLDLML--PGIDGL 63 Query: 62 ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VA 113 E+ R ++ +P+I ++ + + GVDD + KP RE++ R Sbjct: 64 EVCRRLKQEVATQHIPVIMLTAKGEEVDRVVGLELGVDDYIVKPFSPRELVLRVKAVLRR 123 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + + + V + E G++ L E ++ L+ + GK + + Sbjct: 124 STEQPEPRRPGKWSREGLSVDFEAHTVECDGDLVALTATEFKLFSELLQHEGKVRTRDHL 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ V++HI +LR+KL D +++ R +GY Sbjct: 184 LDTVWDTH-FEGYSRTVDTHIRRLRQKLGPY--ADYIETVRGVGYRF 227 >gi|227538398|ref|ZP_03968447.1| DNA-binding response regulator [Sphingobacterium spiritivorum ATCC 33300] gi|227241745|gb|EEI91760.1| DNA-binding response regulator [Sphingobacterium spiritivorum ATCC 33300] Length = 230 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 40/226 (17%), Positives = 87/226 (38%), Gaps = 11/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 +++DD + + +G + ++ + D+ ++ + G + Sbjct: 8 ILVVDDEQDIVELIAYNLKREGYQVFTASNGKEAIAQAKEVNPDLIILDVMMPQMDGIEA 67 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L R + ++ ++ + + F G DD + KPI R +++R+ AI RR Sbjct: 68 CRLMRAMPEFKHTFMVFLTARSEEYSEIAGFHVGADDYIAKPIKPRALMSRINAILRRNT 127 Query: 121 VSNNRAETGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + E + + D + L ++E +L L + K + QI Sbjct: 128 AEDEIHEGNRLEVSDLVIDRDSFLAYRGTDKITLAKKEFELLYLLASKPNKVFTREQILK 187 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +I+ V ++ HI KLR+K+ + V + + +GY + Sbjct: 188 SIW-EDSVVVTNRTIDVHIRKLREKIGE----NYVATVKGVGYKFE 228 >gi|196034428|ref|ZP_03101837.1| DNA-binding response regulator [Bacillus cereus W] gi|196042110|ref|ZP_03109394.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|218905762|ref|YP_002453596.1| DNA-binding response regulator [Bacillus cereus AH820] gi|228917175|ref|ZP_04080732.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|301056045|ref|YP_003794256.1| response regulator [Bacillus anthracis CI] gi|195992970|gb|EDX56929.1| DNA-binding response regulator [Bacillus cereus W] gi|196027046|gb|EDX65669.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|218539918|gb|ACK92316.1| DNA-binding response regulator [Bacillus cereus AH820] gi|228842376|gb|EEM87467.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|300378214|gb|ADK07118.1| response regulator [Bacillus cereus biovar anthracis str. CI] Length = 230 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 43/228 (18%), Positives = 92/228 (40%), Gaps = 10/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D +++ +G + + E D+ ++ L Sbjct: 5 ILLVEDDLSIQEMVEKYLVKEGFQVTIASDGEEGVNTYLKGSFDLIILDIM--MPKLDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115 E+ RIIR S VP++ +S + G DD + KP E+ R + Sbjct: 63 EVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 Y + + + G + + E G+ L +E IL+ + N+ + K QI++ Sbjct: 123 YSATETTEKTIQIGDLTIDPINFTVEKNGKPLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 I+ + ++NV+ H+ +LR+K+ + + + + +GY ++ Sbjct: 183 LIWNE-EYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLEV 229 >gi|332523446|ref|ZP_08399698.1| transcriptional regulatory protein WalR [Streptococcus porcinus str. Jelinkova 176] gi|332314710|gb|EGJ27695.1| transcriptional regulatory protein WalR [Streptococcus porcinus str. Jelinkova 176] Length = 236 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 49/232 (21%), Positives = 98/232 (42%), Gaps = 16/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + + + D+ ++ L L Sbjct: 4 ILIVDDEKPISDIIKFNLTKEGYDIMTAFDGREAITIFEEDKPDLVILDLML--PEMDGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IR S +P+I +S S + + G DD V KP +RE+LARV A RR + Sbjct: 62 EVAKEIRKTSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTET 121 Query: 122 S------------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 N G +++ D + G+ L RE +L +L + G+ + Sbjct: 122 IETAVAEENASSGNQELTIGNLQILPDAFLAKKYGKEVELTHREFELLHHLANHIGQVMT 181 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + + ++G +D + V+ + +LR+K+ + + + ++R +GY + Sbjct: 182 REHLLETVWG-YDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYM 232 >gi|261407147|ref|YP_003243388.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261283610|gb|ACX65581.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] Length = 228 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 43/223 (19%), Positives = 86/223 (38%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + +G + + + + S R D+ ++ L K + Sbjct: 5 LLIVEDEPGMLEEMQTYLQREGFKVLTACTGKEALMIARSERPDLVVLDWMLPEK--SGI 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R IR S +I ++ + + G DD + KP RE+ +R+ A+ RRL+ Sbjct: 63 DVCREIRQTSHCGIIMVTARSDESDKIVGLEIGADDYLTKPFSLRELASRIRALLRRLRG 122 Query: 122 SNNRAETGPIRVFSDG---RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 +++ G+ L E +IL L G ++ Q+ A Sbjct: 123 PEDKSIFLERDNLIISEAKCQVFKDGQELQLTPTEFKILFTLAGRPGIVFSRLQLLKAAL 182 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 + E ++SHI LR+KL + + + GY Sbjct: 183 -EDEYMGYERTMDSHIRNLRRKLGDDPANPRYIQTVYGFGYRF 224 >gi|158317067|ref|YP_001509575.1| two component transcriptional regulator [Frankia sp. EAN1pec] gi|158112472|gb|ABW14669.1| two component transcriptional regulator, winged helix family [Frankia sp. EAN1pec] Length = 246 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 44/238 (18%), Positives = 88/238 (36%), Gaps = 23/238 (9%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD A V++ +G + + + + D+ ++ LE Sbjct: 4 LVVDDDAAVRESLERSLRFEGYEVRTAPDGVAALEVVARDQPDIVVLDVM--MPRMDGLE 61 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 R +RA P++ ++ L + D G DD + KP E+ AR+ A+ RR + Sbjct: 62 TCRRLRARGDDVPVLMLTARDGLADRVSGLDVGADDYLVKPFALEELFARLRALIRRSTL 121 Query: 122 SNNRAETGPIRV-------------------FSDGRDPEVQGEVFPLPRRERRILEYLMA 162 R +G L + E +LE + Sbjct: 122 VTRAGVGHGPAHGAEPGHGVPAALSYAGVALDPASRQVLREGRELTLTKTEFELLELFLT 181 Query: 163 NRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + ++++ I ++G +D N +E +S LR+KL + + R +GY + Sbjct: 182 HPRQVLSRSMIMEKVWG-YDFGPSSNSLEVFVSYLRRKLEAGGEPRLLHTVRGVGYVL 238 >gi|312878480|ref|ZP_07738370.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor lactoaceticus 6A] gi|311794740|gb|EFR11179.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor lactoaceticus 6A] Length = 231 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 49/224 (21%), Positives = 93/224 (41%), Gaps = 6/224 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + +G + + D+ ++ L G + Sbjct: 6 ILIIEDEKQIARFIELELKHEGYDVYVCYDGKEGLKKVEEIHPDLILLDIML--PGINGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118 E+ R IR HS VPLI ++ + + DSG DD V KP E + ++ Sbjct: 64 EICRKIRQHSNVPLIMVTAKDDIPDRVMGLDSGADDYVTKPFAIEELLARIRAALRKSKQ 123 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 L + + + + R + ++ L +RE +LEYL+ N+G + + QI ++ Sbjct: 124 LNIIREILTIADLTIDTSKRIVKRADKIIELTKREYDLLEYLVRNKGIVLTREQILENVW 183 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 G + + NVV+ +I LR K+ + + + R +GY + Sbjct: 184 G-YSYMGDTNVVDVYIRYLRSKVDDGFKTKLIHTVRGVGYKCEE 226 >gi|309790007|ref|ZP_07684582.1| two component transcriptional regulator [Oscillochloris trichoides DG6] gi|308227950|gb|EFO81603.1| two component transcriptional regulator [Oscillochloris trichoides DG6] Length = 228 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 55/223 (24%), Positives = 89/223 (39%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + G A F G L R D+ ++ L Sbjct: 5 ILIVDDVREIVQGLAAYFRQAGFETLAAYDGRSALDLARRERPDLIILDWM--MPELDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 E+ R +R S VP+I ++ TL + G DD + KP RE++AR AI RR Sbjct: 63 EVCRQLRRESSVPIIMLTARVEETDTLIGLELGADDYIAKPFRAREVVARARAILRRASG 122 Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + G + + D EV G L E +L LM N G+ +++ Q+ A Sbjct: 123 ALAPPSMVRGGGVSLDLDRHTTEVAGHTVELTPTEFALLLALMRNPGRPLSRAQLLDAAQ 182 Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 G E +++HI LR+K+ + + + +GY Sbjct: 183 G-DAFEGYERTIDAHIKNLRRKIEADPANPRRILTVFGVGYKF 224 >gi|288941366|ref|YP_003443606.1| two component transcriptional regulator PhoB, winged helix family [Allochromatium vinosum DSM 180] gi|288896738|gb|ADC62574.1| two component transcriptional regulator PhoB, winged helix family [Allochromatium vinosum DSM 180] Length = 228 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 40/222 (18%), Positives = 85/222 (38%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++IDD +++ + + L S+ D+ ++ L G G ++ Sbjct: 4 ILVIDDEPDIREVMRFALESSDFRVMEAGHADEARKLLSNETPDLILLDWMLPGRSGLEL 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV--NKPIHHREILARVAAIYRR 118 + + +P+I IS + + D+G DD + + + Sbjct: 64 AQQLKQNPKTKSIPIIMISARGEEEDRVKGLDTGADDYIAKPFSPREMVARVKAVLRRAK 123 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + E G + + + G G + E R+L + MA+ + +++Q+ ++ Sbjct: 124 PDEATDEIEIGGLVMDNLGHRVTAGGRPIEVAPTEYRLLHFFMAHADRAFSRSQLLDQVW 183 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G VEE V+ H+ +LRK L + + R +GY Sbjct: 184 G-DQVYVEERTVDVHVRRLRKALEPTGHDRLLQTVRGVGYRF 224 >gi|260906859|ref|ZP_05915181.1| putative two-component system response regulator [Brevibacterium linens BL2] Length = 226 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 47/220 (21%), Positives = 88/220 (40%), Gaps = 5/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + +G + + D+ ++ L G+ L Sbjct: 5 ILVVDDDTALAEMIGIVLKSEGFEPFFCATGDQAFDEFQKVNPDLVLLDLML--PGKDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR S VP+I ++ + +SG DD V KP +E++ARV A R + Sbjct: 63 EVCREIREISSVPIIMLTAKSDTVDVVLGLESGADDYVPKPFKPKELIARVRARLRISEP 122 Query: 122 SNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 G + V G G L E +L L + ++ + ++G Sbjct: 123 QAPELLTVGDVVVDVAGHTVTKGGSPISLTPLEFDLLVALARKPWQVFSRETLLEEVWG- 181 Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219 + A + +V H+ +LR K+ + D + + R +GY Sbjct: 182 YRHAADTRLVNVHVQRLRSKIERDPEKPDIIVTVRGVGYK 221 >gi|255037759|ref|YP_003088380.1| two component transcriptional regulator, winged helix family [Dyadobacter fermentans DSM 18053] gi|254950515|gb|ACT95215.1| two component transcriptional regulator, winged helix family [Dyadobacter fermentans DSM 18053] Length = 236 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 44/223 (19%), Positives = 95/223 (42%), Gaps = 10/223 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61 +++DD + + + +G S+ ++ + + + D+ ++ + G + Sbjct: 14 LVVDDDSDIVELLEYNLTKEGYSVLTASNGKKAIDIAKAFVPDLILLDIMMPQLDGIETG 73 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R ++ ++ + + F+ G DD + KPI R +++R+ A++RR Sbjct: 74 RILRQNPDIKNTYILFLTARSEEYSEVAAFEVGADDYITKPIKPRALMSRINALFRREAQ 133 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFP----LPRRERRILEYLMANRGKRVAKTQIFSAI 177 +T I S R + LP++E +L +L K ++ ++ I Sbjct: 134 KAESGDTIEILDLSINRKNYTVTQGGEKSTVLPKKEFELLFFLAQTPNKVFSRDELLQKI 193 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G D V E V+ HI KLR+KL + + + + +GY Sbjct: 194 WGA-DIYVLERTVDVHIRKLREKLGDT----YIKTLKGVGYMF 231 >gi|323702183|ref|ZP_08113850.1| two component transcriptional regulator, winged helix family [Desulfotomaculum nigrificans DSM 574] gi|323532870|gb|EGB22742.1| two component transcriptional regulator, winged helix family [Desulfotomaculum nigrificans DSM 574] Length = 224 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 46/219 (21%), Positives = 95/219 (43%), Gaps = 3/219 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD + + +G +E N + ++ ++ G Sbjct: 5 ILVIDDDPKITAMLQRVLTYEGYRVEVANDGYTGLKMAQKNPPELLILDIM--MPGLDGW 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R R + +P++ +S +++ + + G DD + KP E+LARV A+ RR Sbjct: 63 EICRRFRRENFIPILILSARDEVESRVKGLNLGADDYLVKPFALEELLARVQALLRRKTN 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 S + +++ R+ G + L +E +L+ + + + + K I I+G+ Sbjct: 123 SAKVIQFADLKMDLSTREVHRAGVLLSLTSKEFDLLQLFLQHPNQVLTKDTIIDHIWGI- 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D NV+E +++ LR+KL + + R +GY + Sbjct: 182 DYTGGSNVLEVYVNMLRQKLEEGNRSRLIHTVRGVGYVL 220 >gi|299536046|ref|ZP_07049363.1| two-component response regulator YcbL [Lysinibacillus fusiformis ZC1] gi|298728470|gb|EFI69028.1| two-component response regulator YcbL [Lysinibacillus fusiformis ZC1] Length = 230 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 41/228 (17%), Positives = 88/228 (38%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D +++ +G ++ + E D+ ++ + L Sbjct: 5 ILLVEDDEAIREMVDNYLTMEGFNVTTATNGEEALHNCLQNTFDLVILDIMI--PKLNGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-------REILARVAA 114 E+ +IIR + +P+I +S S G DD + KP + ++ R Sbjct: 63 EVLKIIREQAALPIIIMSAKDSDVDKALGLGLGADDYIAKPFSMLEFSARVKAVIRRATK 122 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + E +++ G+ L +E IL+ + NR + K QI+ Sbjct: 123 YSSQAEQKQEVLEIDNLKIDIVNFSIAKSGQEIKLTSKEFSILKLFVTNRQRVFTKEQIY 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 I+ +EN++ HI +LR+K+ + + + +GY + Sbjct: 183 QMIW-KDAYYGDENIINVHIRRLREKIEDDPSNPQYIKTLWGIGYKFE 229 >gi|253573665|ref|ZP_04851008.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251847193|gb|EES75198.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 226 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 45/223 (20%), Positives = 97/223 (43%), Gaps = 5/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +++DD +++ + G+ + + L S + D+ ++ Sbjct: 4 ILVVDDDQHIRELVRLFLEEAGIDQVMEAENGRKALALVESEKVDMVILDIM--MPEMDG 61 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119 +L R +R + +PL+ ++ + + F+ G DD + KP E++ARV A+ R Sbjct: 62 WDLCRELRRYYDMPLLMLTAKGETRQVVKGFELGTDDYLVKPFEPAELVARVKALLKRYQ 121 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + G +R+ + E LP +E +L L + G+ + + Q+ I+G Sbjct: 122 VSISQTVTIGALRMNRKTFEVESGESSITLPLKEFELLFKLGSYAGRTLTREQLIEEIWG 181 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D E ++ HI++LR++ + + + R LGY ++ Sbjct: 182 -YDFEGNERTLDVHINRLRERFPEETFGFKIRTIRGLGYRLEV 223 >gi|229093633|ref|ZP_04224733.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus Rock3-42] gi|228689720|gb|EEL43527.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus Rock3-42] Length = 230 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 43/228 (18%), Positives = 93/228 (40%), Gaps = 10/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D +++ +G + + E D+ ++ L Sbjct: 5 ILLVEDDLSIQEMVEKYLVKEGFQVTIASDGEEGVNTYLKGSFDLIILDIM--MPKLDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115 E+ RIIR S VP++ +S + G DD + KP E+ R + Sbjct: 63 EVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 Y + + + G + + E +G+ L +E IL+ + N+ + K QI++ Sbjct: 123 YSATETTEKTIQIGDLTIDPINFTVEKKGKPLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 I+ + ++NV+ H+ +LR+K+ + + + + +GY ++ Sbjct: 183 LIWNE-EYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLEV 229 >gi|160933446|ref|ZP_02080834.1| hypothetical protein CLOLEP_02292 [Clostridium leptum DSM 753] gi|156867323|gb|EDO60695.1| hypothetical protein CLOLEP_02292 [Clostridium leptum DSM 753] Length = 234 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 51/225 (22%), Positives = 95/225 (42%), Gaps = 11/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D ++ A D+G ++ + D+ ++ L Sbjct: 15 ILIIEDEEAIQGVVKAFLEDEGYNVVLASDGLEGMEKFREYHPDLILLDLML--PKMNGF 72 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + IR SQVP+I ++ + + FD+ DD + KP ++ + A+ RR + Sbjct: 73 SVCEAIRKESQVPIIMLTALDDDASQMKGFDALADDYITKPFSMPLVVKHIEAVLRRAEQ 132 Query: 122 SNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 +D V+ E L RE IL+ L+ N+G+ + + +I Sbjct: 133 GAGVETNILRYKDLTLDTDSFTVLVKDESVSLTIREFEILKLLVENQGRVFTRESLLDSI 192 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +G +D +E +V +HI +RKKL G D +++ R GY I+ Sbjct: 193 WG-YDYFGDEKIVNTHIKNIRKKL----GVDYIETIRGAGYKIEK 232 >gi|229009103|ref|ZP_04166437.1| Two component transcriptional regulator, winged helix [Bacillus mycoides Rock1-4] gi|228752157|gb|EEM01850.1| Two component transcriptional regulator, winged helix [Bacillus mycoides Rock1-4] Length = 237 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 44/229 (19%), Positives = 86/229 (37%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +I+D +++ +G + + E L + D+ ++ + Sbjct: 5 IAIIEDEDNIREICKRYLESEGYEVYTAENGEEGWNLFQQYQPDLIVLDLM--MPKKDGW 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA------- 114 EL IR HS VP+I ++ + + G DD V KP RE++ RV Sbjct: 63 ELCEEIRQHSNVPIIILTARAEERDRILGLTIGADDYVTKPFSPRELVLRVQILLRRGNQ 122 Query: 115 -IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + + + + R V G L +E +L + + + +++Q+ Sbjct: 123 ATIQMQEPVSEIIRFHDLDIHPAKRRVFVCGHEIELTVKEFEVLHIMAKHPRQVFSRSQL 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221 I+ F+ N V +S+LR+KL + + +GY D Sbjct: 183 LEQIWD-FEYEGCTNTVTVLVSRLREKLEKHTTKNRWIHTVWGIGYRFD 230 >gi|226324180|ref|ZP_03799698.1| hypothetical protein COPCOM_01959 [Coprococcus comes ATCC 27758] gi|225207729|gb|EEG90083.1| hypothetical protein COPCOM_01959 [Coprococcus comes ATCC 27758] Length = 229 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 46/227 (20%), Positives = 88/227 (38%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + D G +E N + D+ ++ L G Sbjct: 4 ILIVEDEESIADLEKDYLELSGFEVEVANDGQTGLDKALFGDFDLVILDLML--PGVDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +RA P+I +S + G DD + KP E++ARV A R + Sbjct: 62 EICRKVRAEKNTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARYER 121 Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N E +++ + R V G +E +L +L ++ K ++F Sbjct: 122 LIGSAVEENKVIEIRGLKIDTTARRVWVNGVEKNFTTKEFDLLTFLASHPNHVYTKDELF 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 S I+ + + + V HI K+R+K+ + +++ +GY Sbjct: 182 SEIWDM-ESIGDIATVTVHIKKIREKIEYDTSNPQYIETIWGVGYRF 227 >gi|118470709|ref|YP_885340.1| DNA-binding response regulator RegX3 [Mycobacterium smegmatis str. MC2 155] gi|118171996|gb|ABK72892.1| DNA-binding response regulator RegX3 [Mycobacterium smegmatis str. MC2 155] Length = 225 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 53/226 (23%), Positives = 101/226 (44%), Gaps = 10/226 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + D L +G + D+ ++ L G + Sbjct: 2 LIVEDEESLADPLAFLLRKEGFEATVVGDGPSALAEFERSGADIVLLDLML--PGMSGTD 59 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + +RA S VP+I ++ S + + G DD V KP RE++AR+ A+ RR + Sbjct: 60 VCKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGADN 119 Query: 123 NNRAETG------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 ++ P+R+ + V GE LP +E +LEYLM N G+ + + Q+ Sbjct: 120 DDAGADDGVLEAGPVRMDVERHVVSVNGEPITLPLKEFDLLEYLMRNSGRVLTRGQLIDR 179 Query: 177 IYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221 ++G D + ++ H+ +LR K+ + + + R LGY ++ Sbjct: 180 VWGA-DYVGDTKTLDVHVKRLRSKIEEDPANPVHLVTVRGLGYKLE 224 >gi|113954022|ref|YP_731785.1| DNA-binding response regulator [Synechococcus sp. CC9311] gi|113881373|gb|ABI46331.1| DNA-binding response regulator [Synechococcus sp. CC9311] Length = 248 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 44/228 (19%), Positives = 89/228 (39%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++ G ++ D+ ++ Sbjct: 11 ILVVDDEASIRRILETRLSMIGYNVVTACDGTEALESFEQCNPDLVVLDVM--MPKLDGY 68 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + +R S VP++ ++ + + + G DD V KP +E+ AR+ + RR++ Sbjct: 69 GVCQELRKESDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRVEK 128 Query: 122 SNNRAETGPI-------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 R+ ++ R E L E +LE L+ G+ ++ +I Sbjct: 129 EQVAGIPNSGVIQVADLRIDTNKRQVFRADERIRLTGMEFSLLELLVGRSGEPFSRGEIL 188 Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 ++G + V+ VV+ HIS+LR KL + + + + R GY Sbjct: 189 KDVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGYLF 236 >gi|300770785|ref|ZP_07080663.1| response regulator [Sphingobacterium spiritivorum ATCC 33861] gi|300762342|gb|EFK59160.1| response regulator [Sphingobacterium spiritivorum ATCC 33861] Length = 230 Score = 149 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 40/226 (17%), Positives = 87/226 (38%), Gaps = 11/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 +++DD + + +G + ++ + D+ ++ + G + Sbjct: 8 ILVVDDEQDIVELIAYNLKREGYQVFTASNGKEAIAQAKEVNPDLIILDVMMPQMDGIEA 67 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L R + ++ ++ + + F G DD + KPI R +++R+ AI RR Sbjct: 68 CRLMRAMPEFKHTFMVFLTARSEEYSEIAGFHVGADDYIAKPIKPRALMSRINAILRRNT 127 Query: 121 VSNNRAETGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + E + + D + L ++E +L L + K + QI Sbjct: 128 AEDEIHEGNRLEVSDLVIDRDSFLAYRGADKITLAKKEFELLYLLASKPNKVFTREQILK 187 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +I+ V ++ HI KLR+K+ + V + + +GY + Sbjct: 188 SIW-EDSVVVTNRTIDVHIRKLREKIGE----NYVATVKGVGYKFE 228 >gi|153813960|ref|ZP_01966628.1| hypothetical protein RUMTOR_00167 [Ruminococcus torques ATCC 27756] gi|317501488|ref|ZP_07959686.1| winged helix family Two component transcriptional regulator [Lachnospiraceae bacterium 8_1_57FAA] gi|331088040|ref|ZP_08336961.1| hypothetical protein HMPREF1025_00544 [Lachnospiraceae bacterium 3_1_46FAA] gi|145848356|gb|EDK25274.1| hypothetical protein RUMTOR_00167 [Ruminococcus torques ATCC 27756] gi|316897117|gb|EFV19190.1| winged helix family Two component transcriptional regulator [Lachnospiraceae bacterium 8_1_57FAA] gi|330408996|gb|EGG88455.1| hypothetical protein HMPREF1025_00544 [Lachnospiraceae bacterium 3_1_46FAA] Length = 224 Score = 149 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 53/225 (23%), Positives = 94/225 (41%), Gaps = 10/225 (4%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 M ++D +++ I G+ GF + ++ ++ L GE Sbjct: 1 MIYCVEDDDNIRELVIYTLETTGLKARGFADGSAFTEALAFETPELILLDIML--PGEDG 58 Query: 61 LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAI 115 LE+ + ++ S+ +P+I ++ S + DSG DD V KP E+ + Sbjct: 59 LEILKKLKCSSKTKSIPVIMVTAKGSEYDKVIGLDSGADDYVTKPFGMMELVSRIKAVLR 118 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + E + + + V G PL +E +LE LM N G + + Q+ + Sbjct: 119 RSKGSQERENPEIQGVHIDVKKHEVTVDGRTVPLTLKEFELLEKLMRNEGIVLTRDQLLT 178 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I+G +D E V+ HI LR+KL K + + + R +GY I Sbjct: 179 EIWG-YDFDGETRTVDVHIRTLRQKLGEKG--EIIQTVRGVGYRI 220 >gi|71842271|ref|YP_277359.1| Ycf27 [Emiliania huxleyi] gi|60101514|gb|AAX13858.1| ompR [Emiliania huxleyi] Length = 239 Score = 149 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 45/227 (19%), Positives = 92/227 (40%), Gaps = 10/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + ++ G ++ + E L + ++ ++ L Sbjct: 10 ILVVDDESNIRKILETRLTIRGYNVISASDGEEAIRLFHQEQPNLVILDIML--PKLDGY 67 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------AI 115 + +R S VP+I ++ + + + G DD V KP + +E+ ARV Sbjct: 68 TVCSELRKKSNVPIIMLTARGDISDRVMGLEFGADDYVIKPFYPKELEARVRSLLRRSEK 127 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + G + + + + L E +LE L+ N G+R+++ I Sbjct: 128 TSNYSSNKYLFQIGNLTINTQKQQVFRDNARVRLTGIEFSLLELLITNAGERLSRAYILD 187 Query: 176 AIYG-LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++G + ++ VV+ HIS+LR KL + D + + R GY Sbjct: 188 TVWGYTPERYLDTRVVDVHISRLRSKLEIDPGKPDLILTARGTGYMF 234 >gi|312138612|ref|YP_004005948.1| two component system response regulator [Rhodococcus equi 103S] gi|325676321|ref|ZP_08156000.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707] gi|311887951|emb|CBH47263.1| two component system response regulator [Rhodococcus equi 103S] gi|325552882|gb|EGD22565.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707] Length = 228 Score = 149 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 97/224 (43%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V++ +G +++ +++R D ++ L Sbjct: 3 ILVVDDDRAVRESLRRSLSFNGYTVDLAVDGMDALEKVAASRPDALVLDVM--MPRLDGL 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +R+ P++ ++ S+ + D+G DD + KP E+LAR+ A+ RR Sbjct: 61 EVCRRLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARLRALLRRAA 120 Query: 121 ----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + + R+ G L R E +LE LMAN + +++++I Sbjct: 121 PAAGDDSEAMTFEDLTLDPVTREVTRGGRSISLTRTEFALLEMLMANPRRVLSRSRILEE 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G +D N +E ++ LR+K + + R +GY + Sbjct: 181 VWG-YDFPTSGNALEVYVGYLRRKTEADGEPRLIHTVRGVGYVL 223 >gi|294102665|ref|YP_003554523.1| two component transcriptional regulator, winged helix family [Aminobacterium colombiense DSM 12261] gi|293617645|gb|ADE57799.1| two component transcriptional regulator, winged helix family [Aminobacterium colombiense DSM 12261] Length = 232 Score = 149 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 48/225 (21%), Positives = 94/225 (41%), Gaps = 6/225 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 +++DD ++D G + + L +A D+ ++ L G +V Sbjct: 6 ILIVDDEKGIQDIVSQALKRRGYETICASDGDSALDLAFAAHPDLIILDLMLPRMDGWEV 65 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118 + + + +P+I ++ ++ + G DD + KP E++ARV R Sbjct: 66 CRRLKSNKETALIPIIMLTARRDEMDVVEGLELGADDYMKKPFSLAELVARVGVLLRRTR 125 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + G + + + + ++G L E R+LE L G+ V++ ++ I+ Sbjct: 126 MTEETRQITNGDLVMDIENQWVMLRGNSLDLSPTEFRLLELLAHRFGRTVSRDELLGRIW 185 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDW 222 L + V+ HIS+LRKKL + + + R GY I W Sbjct: 186 NL--YGGDTRTVDVHISRLRKKLDDNKHPALLIQTLRGRGYRITW 228 >gi|257884144|ref|ZP_05663797.1| transcriptional regulator [Enterococcus faecium 1,231,501] gi|257819982|gb|EEV47130.1| transcriptional regulator [Enterococcus faecium 1,231,501] Length = 234 Score = 149 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 42/229 (18%), Positives = 86/229 (37%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 +++DD + +G + L D ++ L G ++ Sbjct: 4 ILVVDDEPSIVTLLTFNLEKEGYKVTSATDGGEGLELALEQSFDFIILDVMLPTMDGMEI 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R ++ P++ ++ + + G DD + KP RE+LAR+ AI+RR++ Sbjct: 64 TQRLRQ--EKNETPILMLTAKDDQVDRIIGLEIGADDYLTKPFSPREVLARMKAIFRRIE 121 Query: 121 VSNNRAETGPIRV--------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + V + L +E +L Y M + + + + Sbjct: 122 PRKQSKDEAEPEYLSIGQITADLTNYQVTVDDHLIELTPKEFELLVYFMKRKDRVIDRDT 181 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + I+ FD A + +V+ H+S LR+K+ + + + R GY Sbjct: 182 LLDRIW-NFDFAGQSRIVDVHVSHLREKIERDPKHPKYLVTVRGFGYKF 229 >gi|261404059|ref|YP_003240300.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261280522|gb|ACX62493.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] Length = 226 Score = 149 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 43/222 (19%), Positives = 101/222 (45%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +++DD +++ + G+ + + + D+ ++ Sbjct: 4 ILVVDDDPNIRELIKVFLEEAGMEGVMEASDGVEALSVMEQVSVDLVVMDIM--MPNMDG 61 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL R IR ++ +P++ ++ + + F+ G DD + KP E++ RV A+ +R + Sbjct: 62 WELCREIRRNTGIPVLMLTAKGETRQIVKGFELGTDDYLVKPFEPAELVVRVKALLKRYQ 121 Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 V+ ++ T ++ + + EVF LP +E +L L + G + + ++ I+G Sbjct: 122 VAASQTVTIGNLQMNRKTYEAKAGDEVFTLPLKEFELLFKLASYPGSTLTRDRLIEDIWG 181 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +D E ++ H+++LR++ + + + R LGY ++ Sbjct: 182 -YDFEGNERTLDVHVNRLRERFPEEKYRFRIRTVRGLGYRLE 222 >gi|206977756|ref|ZP_03238647.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217962018|ref|YP_002340588.1| DNA-binding response regulator [Bacillus cereus AH187] gi|229141265|ref|ZP_04269803.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus BDRD-ST26] gi|206744057|gb|EDZ55473.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217065662|gb|ACJ79912.1| DNA-binding response regulator [Bacillus cereus AH187] gi|228642046|gb|EEK98339.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus BDRD-ST26] Length = 230 Score = 149 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 43/228 (18%), Positives = 92/228 (40%), Gaps = 10/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D +++ +G + + E D+ ++ L Sbjct: 5 ILLVEDDISIQEMVQKYLIKEGFQVTIASDGEEGVNTYLQGSFDLIILDIM--MPKLDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115 E+ RIIR S VP++ +S + G DD + KP E+ R + Sbjct: 63 EVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 Y + + + G + + E G+ L +E IL+ + N+ + K QI++ Sbjct: 123 YSATETTEKMIQIGDLTIDPINFTVEKNGKPLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 I+ + ++NV+ H+ +LR+K+ + + + + +GY ++ Sbjct: 183 LIWNE-EYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLEV 229 >gi|89069576|ref|ZP_01156920.1| phosphate regulon transcriptional regulatory protein PhoB [Oceanicola granulosus HTCC2516] gi|89044911|gb|EAR51001.1| phosphate regulon transcriptional regulatory protein PhoB [Oceanicola granulosus HTCC2516] Length = 230 Score = 149 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 50/221 (22%), Positives = 87/221 (39%), Gaps = 4/221 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61 ++++D ++ +G E L R DV ++ L G +V Sbjct: 10 LIVEDEPAQREVLGYNLEAEGFRTSRAEDGEQALMLVQEDRPDVMVLDWMLPNLSGIEVC 69 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + V +I +S + ++G DD V KP E++ARV RR++ Sbjct: 70 RQLKSRPDTRDVAIIMLSARSEEVDKVRGLETGADDYVVKPYSVSELMARVRTQLRRVRP 129 Query: 122 SNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S + ++ + L E R+L M G+ ++ Q+ ++G Sbjct: 130 STVGQVLTFEDFVLDAETHRVTRADKPLKLGPTEFRLLSTFMEKPGRVWSRDQLLDRVWG 189 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D V+ V+ HI +LRK L G DPV + R GY++ Sbjct: 190 R-DIYVDTRTVDVHIGRLRKALTAHGGSDPVRTVRGAGYAL 229 >gi|269216894|ref|ZP_06160748.1| DNA-binding response regulator VicR [Slackia exigua ATCC 700122] gi|269129701|gb|EEZ60785.1| DNA-binding response regulator VicR [Slackia exigua ATCC 700122] Length = 244 Score = 149 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 51/237 (21%), Positives = 84/237 (35%), Gaps = 21/237 (8%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD +++ +G + + D+ ++ Sbjct: 11 ILIADDDQDIRELLRLYLESEGYRVREAVDGAEALGAVKAGGIDLVLLDIM--MPRIDGY 68 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R +R S +P+I +S + D G DD + KP + E LARV + RR Sbjct: 69 QVLRRVRETSALPVIMVSAKGQDPDKIIGLDLGADDYLTKPFNPLEALARVRSCLRRAYG 128 Query: 122 SNNRAETGPI-----------------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANR 164 A + D E L E R+L M++ Sbjct: 129 MPAGASPDDPSAKAPLRVARVLSVRDLTLDLDACVLHRGDEPLDLTPVEFRMLSLFMSHP 188 Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 G+ K QIF +G + N V ISKLR KL + G + + R LGY ++ Sbjct: 189 GRVFTKQQIFEEGWGE-EYVASGNNVMVGISKLRAKLSDDPGA-YIATVRGLGYRME 243 >gi|168179677|ref|ZP_02614341.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|182669403|gb|EDT81379.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] Length = 221 Score = 149 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 95/224 (42%), Gaps = 10/224 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + + G +E + D+ ++ L Sbjct: 5 ILVVEDDFDIHTIISEVLKESGYLVEVATDGLIAVEMFRRGNFDLIVLDVML--PKIDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 + IIR S VP+I ++ + + F+ VDD + KP ++ RV Sbjct: 63 VVCEIIRKESSVPIIMLTALGEEEDEMKGFELKVDDYITKPFSINLLIKRVEAVLRRANG 122 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 L+ +N+ I ++ V + L +E +ILE L++N G+ ++ + + I+ Sbjct: 123 LEENNSTLTFEEIIIYPSNYKTLVNNKEIELTYKEFQILEILISNVGRVFSRESLLNQIW 182 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 G +D + V+++HI LR+KL D + + R +GY I+ Sbjct: 183 G-YDYFGDTRVIDTHIKNLRQKL----NIDYIRTIRGVGYKIEK 221 >gi|320160341|ref|YP_004173565.1| OmpR family two-component response regulator [Anaerolinea thermophila UNI-1] gi|319994194|dbj|BAJ62965.1| OmpR family two-component response regulator [Anaerolinea thermophila UNI-1] Length = 234 Score = 149 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 52/227 (22%), Positives = 86/227 (37%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LIDD AL++ G + S E L D+ ++ L G L Sbjct: 5 ILLIDDDALMRRSLGFNLEQAGFQVFTAASAEDGLVLAKRTPPDLVLLDINL--PGMDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R R P+I ++ + + G DD + KP +LAR+ A+ RR+ Sbjct: 63 DALRRFREEVGAPVIFVTARRRELDQVLGLELGADDYITKPFDFNILLARIKAVLRRVSG 122 Query: 122 SNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 R P + G+ L RE +L L GK V ++ Sbjct: 123 GEERKPAEPQPLLIGELRIDPLAHTVHRAGKPVDLSPREFDLLYTLALEAGKVVPADELL 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 + ++G + E V+ HI LR+KL + + + R +GY + Sbjct: 183 ARVWGA-EFVGEPQVLYVHIRWLREKLEDDPQNPHYILTVRGVGYKL 228 >gi|228941716|ref|ZP_04104263.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228974641|ref|ZP_04135207.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981236|ref|ZP_04141536.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis Bt407] gi|228778436|gb|EEM26703.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis Bt407] gi|228785044|gb|EEM33057.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228817928|gb|EEM64006.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326942322|gb|AEA18218.1| two-component response regulator ycbL [Bacillus thuringiensis serovar chinensis CT-43] Length = 230 Score = 149 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 41/228 (17%), Positives = 91/228 (39%), Gaps = 10/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D +++ +G + + E D+ ++ L Sbjct: 5 ILLVEDDLSIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIM--MPKLDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115 E+ RIIR S VP++ +S + G DD + KP E+ R + Sbjct: 63 EVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 Y + + + G + + E + L +E IL+ + N+ + K QI++ Sbjct: 123 YSATETTEKMIQIGDLTIDPINFTVEKNRKPLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 ++ + ++NV+ H+ +LR+K+ + + + + +GY ++ Sbjct: 183 LVWNE-EYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLEV 229 >gi|302387812|ref|YP_003823634.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] gi|302198440|gb|ADL06011.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] Length = 223 Score = 149 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 53/222 (23%), Positives = 104/222 (46%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++ G S+ ++ E L + D+ I ++ Sbjct: 6 ILVVDDEARMRKLVKDFLSVKGFSVVEASNGEEAVDLFFEQK-DIVLIILDVMMPKMDGW 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120 E + IR +SQVP+I ++ + L FD GVD+ ++KP + ++ARV AI R Sbjct: 65 ETCKTIRKYSQVPIIMLTARSEERDELQGFDLGVDEYISKPFSPKILVARVEAILRRSNA 124 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 V+ + E G I + + G+ L +E +L Y + N+G +++ +I + ++ Sbjct: 125 VTADAVEIGGICIDKAAHQVTIDGKDIDLSYKEFELLAYFLENQGIALSREKILNNVW-N 183 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D + +++H+ KLR K+ K D + + +GY + Sbjct: 184 YDYFGDARTIDTHVKKLRNKMGEKG--DYIKTIWGMGYKFEV 223 >gi|239980465|ref|ZP_04702989.1| two-component systen response regulator [Streptomyces albus J1074] gi|291452324|ref|ZP_06591714.1| two-component system response regulator [Streptomyces albus J1074] gi|291355273|gb|EFE82175.1| two-component system response regulator [Streptomyces albus J1074] Length = 246 Score = 149 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 52/229 (22%), Positives = 93/229 (40%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V+D +G E +S R D+ ++ L Sbjct: 15 ILIVDDEPAVRDALRRSLAFEGYGTEVAVDGLDALEKAASYRPDLIVLDI--QMPRMDGL 72 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 R +R A VP++ ++ ++ + D+G DD + KP E+ ARV A+ RR Sbjct: 73 TAARRVRAAQDTVPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARVRALLRRSS 132 Query: 121 VSNNRAETGPI---------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + +A R+ R+ L R E +LE L+A+ + + + Sbjct: 133 YAVEQAAPDDDGDVLAFADLRMDLSTREVLRGNRPVELTRTEFTLLEMLLAHPRQVLTRE 192 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 QI A++G FD N ++ ++ LR+K V + R +GY + Sbjct: 193 QILKAVWG-FDFEPTSNSLDVYVMYLRRKTEAGGEPRLVHTVRGVGYVL 240 >gi|257062785|ref|YP_003142457.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Slackia heliotrinireducens DSM 20476] gi|256790438|gb|ACV21108.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Slackia heliotrinireducens DSM 20476] Length = 240 Score = 149 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 44/225 (19%), Positives = 91/225 (40%), Gaps = 8/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D ++D A + + + S D+ ++ L Sbjct: 11 ILLVEDEKAIRDAVAAYLERENYWVTAVGDGQDALEEFSKHHFDLVILDLML--PRVPGE 68 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYR 117 + R IR +S VP+I ++ ++ + + G DD + KP RE++ARV ++ Sbjct: 69 RVCRAIRDNSDVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARVRALLRRVHA 128 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + E G + + G V G+ L E ++L L G+ ++ ++ + Sbjct: 129 DSEPQREVLEFGELTIDVSGHKVLVGGKEVDLTASEFKLLTTLSRYPGRVYSRMELVEKV 188 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 G +D E ++SH+ LR K+ + + + +GY + Sbjct: 189 LG-YDFEGYERTIDSHVKNLRAKIGDNPRNPKWLHTVHGVGYRFE 232 >gi|172036640|ref|YP_001803141.1| two-component transcriptional regulatory protein [Cyanothece sp. ATCC 51142] gi|171698094|gb|ACB51075.1| two-component transcriptional regulatory protein [Cyanothece sp. ATCC 51142] Length = 237 Score = 149 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 32/231 (13%), Positives = 74/231 (32%), Gaps = 12/231 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D + + L D+ ++ L G +V Sbjct: 3 ILIVEDEMEIAKIIQTTLERESFDCMVAYDGLTALDLFQQQAPDLIILDLMLPKLDGLEV 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILAR 111 R ++ ++ + +G DD + KP E + Sbjct: 63 CTRIRQKVNTKDPYILMLTAKGEEIDRVIGLSTGADDYLVKPFSPIELVARVRALLRRSL 122 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + + + + + + L E +L M+ G+ ++T Sbjct: 123 RHGGSQNNVYETPHFMVDLDKHSAVKKLEDNTEDTLELTTLEFNLLSTFMSYPGRVWSRT 182 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 Q+ ++G D +E VV++H+ +LRKK+ + + +GY + Sbjct: 183 QLIDKLWGN-DFFGDERVVDTHVRRLRKKIEPDTANPTFIKTVVGVGYKFE 232 >gi|29829894|ref|NP_824528.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29607003|dbj|BAC71063.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 225 Score = 149 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 50/222 (22%), Positives = 93/222 (41%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D ++ G + + E L R D+ ++ L G Sbjct: 4 LLLIEDDDAIRTALELSLTRQGHRVATAATGEDGLKLLREQRPDLIVLDVML--PGIDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR Q+P+I ++ + +SG DD V KP+ R + AR+ A+ RR + Sbjct: 62 EVCRRIRRTDQLPIILLTARNDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGER 121 Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 N + T + GE L E R+L L G+ +++ Q+ ++ Sbjct: 122 EANDSATFGSLVIDRAAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVW-E 180 Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 D + +V++ + +LR K+ + + + R +GY +D Sbjct: 181 HDYLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRLD 222 >gi|228941849|ref|ZP_04104396.1| hypothetical protein bthur0008_44850 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228974774|ref|ZP_04135340.1| hypothetical protein bthur0003_45270 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981369|ref|ZP_04141669.1| hypothetical protein bthur0002_45300 [Bacillus thuringiensis Bt407] gi|228778569|gb|EEM26836.1| hypothetical protein bthur0002_45300 [Bacillus thuringiensis Bt407] gi|228785177|gb|EEM33190.1| hypothetical protein bthur0003_45270 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228818061|gb|EEM64139.1| hypothetical protein bthur0008_44850 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326942455|gb|AEA18351.1| two-component response regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 229 Score = 149 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 46/229 (20%), Positives = 89/229 (38%), Gaps = 11/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D + + + ++ +S E + D+ ++ L Sbjct: 4 ILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQIALQEEYDLIILDIML--PKMNGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IRA +P++ +S + G DD + KP E++ARV A R + Sbjct: 62 EICKQIRAVKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIARYER 121 Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + I + R + E +E +L + + + + + K Q+F Sbjct: 122 LSGNVSKQRDTLYIHGISIDQRARKVFINNEEVAFTTKEFDLLTFFVTHPNQVLNKEQLF 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 I+GL D A + V HI KLR+K+ + +++ GY + Sbjct: 182 ERIWGL-DSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRFNV 229 >gi|119387030|ref|YP_918085.1| two component transcriptional regulator [Paracoccus denitrificans PD1222] gi|119377625|gb|ABL72389.1| two component transcriptional regulator, winged helix family [Paracoccus denitrificans PD1222] Length = 229 Score = 149 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 48/223 (21%), Positives = 96/223 (43%), Gaps = 8/223 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D ++ +G + + + L + + D+ ++ L +E Sbjct: 9 LVVEDEGAQREVLKYNLEAEGFDVVLAENGDEAMLLVAEEQPDLIVLDWML--PNVSGIE 66 Query: 63 LPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 + R ++A Q+P+I +S + ++G DD V KP E++AR+ RR Sbjct: 67 ICRRVKADPSTRQIPIIMLSARSEEVDRVRGLETGADDYVVKPYSVVELMARLRTQLRRT 126 Query: 120 KVSNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + ++ I + + G+ L E R+L LM G+ + Q+ + Sbjct: 127 RPASMGERLSFADIILDAGEHRVFRAGQPVHLGPTEFRLLSTLMEKPGRVWTREQLLDRV 186 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G D V+ ++ H+ +LRK L G +PV + R GYS+ Sbjct: 187 WGR-DIYVDTRTIDVHVGRLRKALMANGGNNPVRTVRGTGYSL 228 >gi|333003432|gb|EGK22976.1| transcriptional regulatory protein baeR [Shigella flexneri K-272] gi|333017262|gb|EGK36582.1| transcriptional regulatory protein baeR [Shigella flexneri K-227] Length = 240 Score = 149 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 42/224 (18%), Positives = 86/224 (38%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + I + + + D+ ++ L G L Sbjct: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLAYVRQTPPDLILLDLML--PGTDGL 70 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118 L R IR S VP++ ++ L + G DD + KP RE + + + Sbjct: 71 TLCREIRRFSDVPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + P+ + +G++ L E R+L+ L GK ++ Q+ + +Y Sbjct: 131 QRELQQQDAESPLIIDEGRFQASWRGKMLNLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190 Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + V + ++SHI LR+KL + + + +GY + Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 >gi|332296828|ref|YP_004438750.1| two component transcriptional regulator, winged helix family [Treponema brennaborense DSM 12168] gi|332179931|gb|AEE15619.1| two component transcriptional regulator, winged helix family [Treponema brennaborense DSM 12168] Length = 248 Score = 149 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 44/236 (18%), Positives = 85/236 (36%), Gaps = 18/236 (7%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 +++DD + + +G S+ + + S D+ ++ L G + Sbjct: 3 ILVVDDEMPILELVSYNLQKEGFSVVTAENGTKALQIARSEHPDLIILDLMLPDMSGFDI 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R + + +P++ + + + G DD V KP + ++ARV I RR + Sbjct: 63 CRILRNDKTTAVIPIVMATAKTEDTDVVSGLELGADDYVTKPFSPKVLVARVKNILRRAQ 122 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFP------------LPRRERRILEYLMANRGKRV 168 + E IL +L N G+ Sbjct: 123 EAKPADTAASPFDRLQTVSRHFLVIKPEKFEVTVSGKQVQFSATEFAILLHLAQNPGRVF 182 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKL----RNKLGFDPVDSKRFLGYSI 220 ++ QI +AI G V E ++ I +RKKL N + +++ R +GY + Sbjct: 183 SRQQIINAIKGDS-YPVTERSIDVQILSIRKKLSEAAGNDSAQNIIETVRGVGYRM 237 >gi|227551905|ref|ZP_03981954.1| response regulator [Enterococcus faecium TX1330] gi|257886932|ref|ZP_05666585.1| transcriptional regulator [Enterococcus faecium 1,141,733] gi|257895504|ref|ZP_05675157.1| transcriptional regulator [Enterococcus faecium Com12] gi|257898119|ref|ZP_05677772.1| transcriptional regulator [Enterococcus faecium Com15] gi|293378369|ref|ZP_06624538.1| response regulator receiver domain protein [Enterococcus faecium PC4.1] gi|293571527|ref|ZP_06682550.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E980] gi|227178977|gb|EEI59949.1| response regulator [Enterococcus faecium TX1330] gi|257822986|gb|EEV49918.1| transcriptional regulator [Enterococcus faecium 1,141,733] gi|257832069|gb|EEV58490.1| transcriptional regulator [Enterococcus faecium Com12] gi|257836031|gb|EEV61105.1| transcriptional regulator [Enterococcus faecium Com15] gi|291608393|gb|EFF37692.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E980] gi|292643233|gb|EFF61374.1| response regulator receiver domain protein [Enterococcus faecium PC4.1] Length = 234 Score = 149 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 42/229 (18%), Positives = 86/229 (37%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 +++DD + +G + L D ++ L G ++ Sbjct: 4 ILVVDDEPSIVTLLTFNLEKEGYKVTSAADGGEGLELALEQSFDFIILDVMLPTMDGMEI 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R ++ P++ ++ + + G DD + KP RE+LAR+ AI+RR++ Sbjct: 64 TQRLRQ--EKNETPILMLTAKDDQVDRIIGLEIGADDYLTKPFSPREVLARMKAIFRRIE 121 Query: 121 VSNNRAETGPIRV--------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + V + L +E +L Y M + + + + Sbjct: 122 PRKQSKDEAEPEYLSIGQITADLTNYQVTVDDHLIELTPKEFELLVYFMKRKDRVIDRDT 181 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + I+ FD A + +V+ H+S LR+K+ + + + R GY Sbjct: 182 LLDRIW-NFDFAGQSRIVDVHVSHLREKIERDPKHPKYLVTVRGFGYKF 229 >gi|254389912|ref|ZP_05005135.1| transcriptional regulatory protein afsQ1 [Streptomyces clavuligerus ATCC 27064] gi|326443028|ref|ZP_08217762.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|197703622|gb|EDY49434.1| transcriptional regulatory protein afsQ1 [Streptomyces clavuligerus ATCC 27064] Length = 225 Score = 149 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 49/222 (22%), Positives = 92/222 (41%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D ++ G + + E L R D+ ++ L G Sbjct: 4 LLLIEDDDAIRTALELSLSRQGHRVATAATGEDGLKLLREQRPDLIVLDVML--PGIDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR Q+P+I ++ + +SG DD V KP+ R + AR+ A+ RR + Sbjct: 62 EVCRRIRRTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGER 121 Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + T + GE L E R+L L G+ +++ Q+ ++ Sbjct: 122 EATDSATFGSLVIDRSAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVW-E 180 Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 D + +V++ + +LR K+ + + + R +GY +D Sbjct: 181 HDYLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRLD 222 >gi|30022615|ref|NP_834246.1| two-component response regulator ycbL [Bacillus cereus ATCC 14579] gi|229112000|ref|ZP_04241543.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus Rock1-15] gi|229129822|ref|ZP_04258788.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus BDRD-Cer4] gi|296505012|ref|YP_003666712.1| two-component response regulator ycbL [Bacillus thuringiensis BMB171] gi|29898173|gb|AAP11447.1| Two-component response regulator ycbL [Bacillus cereus ATCC 14579] gi|228653513|gb|EEL09385.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus BDRD-Cer4] gi|228671323|gb|EEL26624.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus Rock1-15] gi|296326064|gb|ADH08992.1| two-component response regulator ycbL [Bacillus thuringiensis BMB171] Length = 230 Score = 149 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 42/228 (18%), Positives = 92/228 (40%), Gaps = 10/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D +++ +G + + E D+ ++ L Sbjct: 5 ILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIM--MPKLDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115 E+ RIIR S VP++ +S + G DD + KP E+ R + Sbjct: 63 EVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 Y + + + G + + E G+ L +E IL+ + N+ + K QI++ Sbjct: 123 YSATETTEKMIQIGDLTIDPINFTVEKNGKSLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 ++ + ++NV+ H+ +LR+K+ + + + + +GY ++ Sbjct: 183 LVWNE-EYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLEV 229 >gi|21241099|ref|NP_640681.1| two-component system regulatory protein [Xanthomonas axonopodis pv. citri str. 306] gi|21106398|gb|AAM35217.1| two-component system regulatory protein [Xanthomonas axonopodis pv. citri str. 306] Length = 227 Score = 149 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 54/219 (24%), Positives = 95/219 (43%), Gaps = 3/219 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + G S + + + D+ ++ L +G L+ Sbjct: 11 LIVEDEPRLAAVLGEYLHAAGYSHDWIADGAQALGAFRAQQPDLVLLDLMLPNRG--GLD 68 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +R S VP+I ++ L + G DD + KP RE++ARV A+ RR + Sbjct: 69 ICRDLRNESAVPVIMVTARVEEIDRLLGLEIGADDYICKPFSPREVVARVQAVLRRHRHD 128 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 + A +++ D V G L + E R+L L A G+ ++ Q+ +Y Sbjct: 129 PHGAPAPGLQIDEDACRASVDGRALDLTQVEFRLLRTLAAAPGRVYSREQLMGRLY-ADH 187 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 V + V+SH+ LR+KL + G D V S GY + Sbjct: 188 RIVTDRTVDSHVKNLRRKLADAGGEDWVRSVYGAGYRFE 226 >gi|116621283|ref|YP_823439.1| two component heavy metal response transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116224445|gb|ABJ83154.1| two component heavy metal response transcriptional regulator, winged helix family [Candidatus Solibacter usitatus Ellin6076] Length = 238 Score = 149 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 49/221 (22%), Positives = 99/221 (44%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + D G +++ + L D+ ++ L L Sbjct: 3 ILVVEDEKRIADFLCRGLEGAGYAVDAALTGGAALDLIHDTDYDLVVLDRML--PDMDGL 60 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ +R+ P++ +S +L + + G DD + KP E+LARV A+ RR + Sbjct: 61 QVLEKMRSRKAGPPVLILSARGALDDRVKGLEQGADDYLVKPFAFVELLARVRALLRRGQ 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + R + + + R E L +E ILEY+M N+G+ +++T I ++ + Sbjct: 121 PTPERLQVSDLALDCIRRKVTRGAETIDLAPKEFGILEYMMRNKGRPLSRTMIVEHVWDM 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D N+V+ +I LR K+ ++ + + R +GY I+ Sbjct: 181 -DYDGLTNIVDVYIRHLRSKIDDRFQQKLIQTVRGIGYMIE 220 >gi|332669166|ref|YP_004452174.1| winged helix family transcriptional regulator [Cellulomonas fimi ATCC 484] gi|332338204|gb|AEE44787.1| two component transcriptional regulator, winged helix family [Cellulomonas fimi ATCC 484] Length = 242 Score = 149 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 50/230 (21%), Positives = 93/230 (40%), Gaps = 14/230 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ G + L D+ ++ L Sbjct: 12 LLVVDDEPNIRELLATSLRFAGFEVHAAADGGAALRLARDVEPDLVVLDVML--PDMDGF 69 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119 + R +R Q P++ ++ + G DD V KP E++AR+ AI RR Sbjct: 70 TVTRRLREKGQHVPVLFLTARDDTADKVQGLTVGGDDYVTKPFSLEEVVARIRAILRRTS 129 Query: 120 ---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 S++ + + D + G L E ++L YL+ N G+ ++K QI Sbjct: 130 AGLDDSSSVLRYADLELDEDSHEVTRAGHAVELSPTEFKLLRYLILNPGRVLSKAQILDH 189 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG------FDPVDSKRFLGYSI 220 ++ +D + N+VES+IS LR+K+ + +KR +GY + Sbjct: 190 VW-QYDWGGDANIVESYISYLRRKIDQLADADGNRLPPLIHTKRGVGYLL 238 >gi|312868262|ref|ZP_07728462.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Streptococcus parasanguinis F0405] gi|311096007|gb|EFQ54251.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Streptococcus parasanguinis F0405] Length = 233 Score = 149 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 49/232 (21%), Positives = 96/232 (41%), Gaps = 13/232 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + + S+ DV ++ L L Sbjct: 4 ILVVDDEKPISDIIKFNMAKEGYEVLTAFDGREALEVFSAENPDVIILDLML--PEIDGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR S VP+I +S + + + G DD V KP +RE+ ARV A+ RR + Sbjct: 62 EVARTIRKTSNVPIIVLSAKDTEFDKVIGLEIGADDYVTKPFSNRELQARVKALLRRSEF 121 Query: 122 SNNRAETGPI---------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + + D + L RE +L +L + G+ + + Sbjct: 122 AADPQFEKDADTEIVIGDLHILPDAFLVRKGNKELDLTHREFELLYHLATHVGQVMTREH 181 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223 + ++G +D + V+ + +LR+K+ + + + ++R +GY + N Sbjct: 182 LLETVWG-YDYFGDVRTVDVTVRRLREKIEDTPGRPEYILTRRGVGYYMRNN 232 >gi|220901854|gb|ACL82957.1| VanRM [Enterococcus faecium] Length = 232 Score = 149 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 45/229 (19%), Positives = 82/229 (35%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ +D + D +G + + + + + D+ ++ Sbjct: 6 ILIAEDEEEIADLLAIHLEKEGYDVIKVHDGQEALHVIQAQSIDLIILDIM--MPKMDGY 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +RA +P+I +S S + G DD + KP E++ARV A RR Sbjct: 64 EVTRQVRAQYNMPIIFLSAKTSDFDKVHGLVIGGDDYITKPFTPIELVARVNAQLRRSMK 123 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPL--------PRRERRILEYLMANRGKRVAKTQI 173 N+ + G + +E IL L ++ K + I Sbjct: 124 LNHPQADDKKSILEFGEIVISPDQRTVFLYGENIGLTPKEFDILYLLASHPKKVYSVENI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221 F ++ N V HI LRKKL +K + + +GY+ + Sbjct: 184 FQQVW-NDAYFGGGNTVMVHIRTLRKKLGEDKRKNKLIKTVWGVGYTFN 231 >gi|308071608|ref|YP_003873213.1| transcriptional regulatory protein yycF [Paenibacillus polymyxa E681] gi|305860887|gb|ADM72675.1| Transcriptional regulatory protein yycF [Paenibacillus polymyxa E681] Length = 243 Score = 149 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 51/231 (22%), Positives = 92/231 (39%), Gaps = 17/231 (7%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + + + D+ ++ L G + Sbjct: 5 ILVVDDEQPIADILKFNLEKEGYQVICAFDGITAVDIAVKQQPDLILLDLML--PGMDGM 62 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ R +R H Q P+I ++ + + G DD V KP RE+LARV A RR + Sbjct: 63 DVCREVRGHQLQTPIIMLTAKDGEIDKVLGLELGADDYVTKPFSTRELLARVKAQMRRQQ 122 Query: 121 V------------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 G + +D G L RE +L Y+ N GK + Sbjct: 123 RGGASASESRPQEDKQGLRVGDLFFDTDMYTAYKNGTPLDLTHREYELLHYMAKNAGKVM 182 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGY 218 + + A++G F+ + V+ I +LR+K+ + + ++R LGY Sbjct: 183 TREHLLQAVWG-FEYYGDVRTVDVTIRRLREKIEENPSKPETILTRRGLGY 232 >gi|114706443|ref|ZP_01439345.1| two-component phosphate transcriptional regulator PhoB [Fulvimarina pelagi HTCC2506] gi|114538304|gb|EAU41426.1| two-component phosphate transcriptional regulator PhoB [Fulvimarina pelagi HTCC2506] Length = 246 Score = 149 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 49/224 (21%), Positives = 87/224 (38%), Gaps = 8/224 (3%) Query: 4 LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63 +++D + +G +E + + D+ ++ L G +E+ Sbjct: 7 VVEDEEALGVLLRYNLEAEGYEVEVIARGDEADLRLKEDTPDLLVLDWML--PGLSGVEI 64 Query: 64 PRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 R +R P+I ++ + G DD V KP RE ARV A+ RR Sbjct: 65 CRRLRQRPDTAQLPVIMLTARGEESERVQGLSVGADDYVVKPFSMREFTARVKAMMRRAS 124 Query: 121 VSNNRAETGPIRV--FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + G L E ++LE+LM G+ + Q+ ++ Sbjct: 125 PEKVASVLSAGDLELDRSAHRVRRAGRELRLGPTEFKLLEFLMQAPGRVFTREQLLDGVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 G D V+E V+ H+ +LRK + DP+ + R GY++D Sbjct: 185 GR-DIYVDERTVDVHVGRLRKAINRARDRDPIRTVRGAGYALDE 227 >gi|262201364|ref|YP_003272572.1| response regulator receiver [Gordonia bronchialis DSM 43247] gi|262084711|gb|ACY20679.1| response regulator receiver [Gordonia bronchialis DSM 43247] Length = 228 Score = 149 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 48/224 (21%), Positives = 93/224 (41%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V++ +G +++ S R DV+ ++ L Sbjct: 3 ILVVDDDRAVRESLRRSLTFNGYAVDTAGDGIEALEKIVSDRPDVAIMDVM--MPRLDGL 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +R+ P++ ++ ++ + D+G DD + KP E+LAR+ A+ RR Sbjct: 61 EVCRRLRSAGDDLPILVLTARDTVSERVSGLDAGADDYLPKPFALEELLARLRALLRRAV 120 Query: 121 VSNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 RD L R E +LE LMAN + +++++I Sbjct: 121 PDEEADSETLRFADLSLDPVTRDVSRGDRHISLTRTEFALLEMLMANPRRVLSRSRILEE 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G +D N +E ++ LR+K + + R +GY + Sbjct: 181 VWG-YDFPTSGNALEVYVGYLRRKTEADGEDRLIHTVRGVGYVL 223 >gi|271961841|ref|YP_003336037.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270505016|gb|ACZ83294.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 224 Score = 149 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 51/220 (23%), Positives = 90/220 (40%), Gaps = 5/220 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +LI+D V++ +E S E + DV ++ L G E Sbjct: 5 LLIEDDPSVRNALTLALKGRDHEVESAASGEDGLERLARFAADVVVLDLML--PGIDGFE 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLKV 121 + R IRA S ++ +S + ++G DD V KP+ + + AR+ A+ R V Sbjct: 63 VCRRIRAASSTSIVMLSARGDDFDVVGGLEAGADDYVVKPVRPQVLEARIRAVLRRTDGV 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + G + V G LP E R+L YL A G+ ++ Q+ +++ Sbjct: 123 PSPVETYGALCVDRASLTVSRGGRQIALPPIELRLLLYLSAAPGQVFSRQQLLESVW-EH 181 Query: 182 DEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 D + +V++ + +LR K+ + V + R GY Sbjct: 182 DYLGDSRLVDACVQRLRAKIEDVPAEPKYVQTVRGFGYRF 221 >gi|157692516|ref|YP_001486978.1| response regulator [Bacillus pumilus SAFR-032] gi|157681274|gb|ABV62418.1| response regulator [Bacillus pumilus SAFR-032] Length = 235 Score = 149 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 42/225 (18%), Positives = 91/225 (40%), Gaps = 10/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD + + + +G+ + ++ + D+ ++ L + Sbjct: 9 LIIDDEKEILELIHTVLTREGIDRVITASTARDGLSQFHQEQPDLVILDIML--PDGEGY 66 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-----Y 116 ++ + IR S VP+I +S + G DD + KP +E+ RV A Y Sbjct: 67 DICKQIRDVSHVPIIFLSAKGEESDKIVGLAIGGDDYITKPFSPKEVAYRVKAQLRRSSY 126 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + GP + + G L +E ++ Y + + + ++K ++ Sbjct: 127 LQPSQEEPVIKKGPFELNEQQAELTKNGAAIELTPKELMLMTYFLQHPNRVISKETLYQT 186 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 ++G D +N V HI +LR+K+ + + + + + LGY Sbjct: 187 VWGE-DFFGSDNTVMVHIRRLREKIEHSPSTPEFLVTVKGLGYKF 230 >gi|289577955|ref|YP_003476582.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter italicus Ab9] gi|289527668|gb|ADD02020.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter italicus Ab9] Length = 223 Score = 149 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 55/221 (24%), Positives = 103/221 (46%), Gaps = 6/221 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++I+D ++D ++G + + + ++ D+S I ++ Sbjct: 5 LVIEDEEGMRDILKTYLENNGYEVLVAENGKIGLEYFNNNN-DISIILLDIMLPDISGWS 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI--YRRLK 120 L + IR S+VP++ I+ L F+ G DD V KP +E++ARV AI + Sbjct: 64 LLKTIREKSKVPVMMITARGEEYDKLLGFELGADDYVVKPFSPKEVVARVKAILARTSGE 123 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + E I + R V GE L +E +L+ L+ N+GK V++ + + ++G Sbjct: 124 SEVEKTEYEGISINVSSRQVTVDGEKIDLTPKEFDLLKLLIDNKGKVVSREKCLNEVWG- 182 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +D + V++HI +LR+KL K + + +GY +D Sbjct: 183 YDFYGDLRTVDTHIKQLREKLGEK--RKLIKTVWGIGYKLD 221 >gi|240171667|ref|ZP_04750326.1| two-component system response phosphate regulon transcriptional regulator, PhoP [Mycobacterium kansasii ATCC 12478] Length = 240 Score = 149 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 52/225 (23%), Positives = 95/225 (42%), Gaps = 10/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A + + G + ++ AR D ++ G Sbjct: 16 ILVVDDEANIVELLSVSLKFQGFEVHTASNGAQALDRAREARPDAVILDVM--MPGMDGF 73 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118 + R +RA P + ++ SLQ + G DD V KP E++AR+ I RR Sbjct: 74 GVLRRLRADGVDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAG 133 Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + N+R I + + + G+ L E +L Y + N G ++K +I Sbjct: 134 KGSAEPRNSRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILD 193 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +D + NVVES++S LR+K+ + + + R +GY + Sbjct: 194 HVW-RYDFGGDVNVVESYVSYLRRKI-DTGEKRLLHTLRGVGYVL 236 >gi|49481473|ref|YP_038587.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|228929584|ref|ZP_04092602.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228935846|ref|ZP_04098658.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228948260|ref|ZP_04110543.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229124101|ref|ZP_04253293.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus 95/8201] gi|49333029|gb|AAT63675.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|228659403|gb|EEL15051.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus 95/8201] gi|228811247|gb|EEM57585.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228823903|gb|EEM69723.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228829971|gb|EEM75590.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 230 Score = 149 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 43/228 (18%), Positives = 92/228 (40%), Gaps = 10/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D +++ +G + + E D+ ++ L Sbjct: 5 ILLVEDDLSIQEMVEKYLVKEGFQVTIASDGEEGVNTYLKGSFDLIILDIM--MPKLDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115 E+ RIIR S VP++ +S + G DD + KP E+ R + Sbjct: 63 EVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 Y + + + G + + E G+ L +E IL+ + N+ + K QI++ Sbjct: 123 YSATETTEKMIQIGDLTIDPINFTVEKNGKPLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 I+ + ++NV+ H+ +LR+K+ + + + + +GY ++ Sbjct: 183 LIWNE-EYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLEV 229 >gi|325982918|ref|YP_004295320.1| two component transcriptional regulator PhoB, winged helix family [Nitrosomonas sp. AL212] gi|325532437|gb|ADZ27158.1| two component transcriptional regulator PhoB, winged helix family [Nitrosomonas sp. AL212] Length = 240 Score = 149 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 46/222 (20%), Positives = 87/222 (39%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D A +++ G E + A D+ ++ L G Sbjct: 5 ILIVEDEAAIRELIAYNLQQAGYESICAEDAEKAMTIIHDALPDLILLDWMLPNMTGIDF 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118 L R +P+I ++ + + G DD V KP RE++AR+ A Sbjct: 65 ARLLRRNERTRIIPIIMLTARTQEADKVAGLEIGADDYVTKPFSPRELIARINAVLRRLI 124 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + S E +R+ + L E R+L ++M++ + +++Q+ ++ Sbjct: 125 PEASAQVVEIHGLRLDPVNHRVTDGNKEIELGPTEYRLLHFMMSHTERTYSRSQLLDRVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G VEE V+ HI +LRK L+ + + R GY Sbjct: 185 GDH-VFVEERTVDVHIRRLRKALQWSGKDSWIQTVRGAGYRF 225 >gi|228993268|ref|ZP_04153184.1| Uncharacterized sensory transduction protein ycbL [Bacillus pseudomycoides DSM 12442] gi|228999318|ref|ZP_04158898.1| Uncharacterized sensory transduction protein ycbL [Bacillus mycoides Rock3-17] gi|229006873|ref|ZP_04164505.1| Uncharacterized sensory transduction protein ycbL [Bacillus mycoides Rock1-4] gi|228754366|gb|EEM03779.1| Uncharacterized sensory transduction protein ycbL [Bacillus mycoides Rock1-4] gi|228760515|gb|EEM09481.1| Uncharacterized sensory transduction protein ycbL [Bacillus mycoides Rock3-17] gi|228766336|gb|EEM14979.1| Uncharacterized sensory transduction protein ycbL [Bacillus pseudomycoides DSM 12442] Length = 230 Score = 149 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 42/228 (18%), Positives = 93/228 (40%), Gaps = 10/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + +++ +G + + E D+ ++ L Sbjct: 5 ILLVEDDSSIQEMVEKYLTKEGFQITIASDGEEGVLTFLKGSFDLIILDIM--MPKLDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115 E+ RIIR S VP++ +S + G DD + KP E+ R + Sbjct: 63 EVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKASIRRSTK 122 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 Y + E G +++ + + + L +E IL+ + N+ + K QI++ Sbjct: 123 YSATEQKEETIEIGDLKIDLINFTVQKKEKQLKLTLKEFEILKLFVKNQNRVFTKAQIYN 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 I+ + ++NV+ H+ +LR+K+ + + + + +GY ++ Sbjct: 183 LIWNE-EYYGDDNVINVHMRRLREKIEDDPSNPEYIKTLWGIGYKLEV 229 >gi|22536883|ref|NP_687734.1| DNA-binding response regulator [Streptococcus agalactiae 2603V/R] gi|25010796|ref|NP_735191.1| DNA-binding response regulator [Streptococcus agalactiae NEM316] gi|76786877|ref|YP_329467.1| DNA-binding response regulator [Streptococcus agalactiae A909] gi|76798183|ref|ZP_00780434.1| VicR protein [Streptococcus agalactiae 18RS21] gi|77406409|ref|ZP_00783468.1| DNA-binding response regulator [Streptococcus agalactiae H36B] gi|77408360|ref|ZP_00785101.1| DNA-binding response regulator [Streptococcus agalactiae COH1] gi|77410786|ref|ZP_00787144.1| DNA-binding response regulator [Streptococcus agalactiae CJB111] gi|77413081|ref|ZP_00789282.1| DNA-binding response regulator [Streptococcus agalactiae 515] gi|22533733|gb|AAM99606.1|AE014224_9 DNA-binding response regulator [Streptococcus agalactiae 2603V/R] gi|23095150|emb|CAD46385.1| Unknown [Streptococcus agalactiae NEM316] gi|76561934|gb|ABA44518.1| DNA-binding response regulator [Streptococcus agalactiae A909] gi|76586446|gb|EAO62953.1| VicR protein [Streptococcus agalactiae 18RS21] gi|77160874|gb|EAO71984.1| DNA-binding response regulator [Streptococcus agalactiae 515] gi|77163165|gb|EAO74118.1| DNA-binding response regulator [Streptococcus agalactiae CJB111] gi|77173041|gb|EAO76169.1| DNA-binding response regulator [Streptococcus agalactiae COH1] gi|77174973|gb|EAO77783.1| DNA-binding response regulator [Streptococcus agalactiae H36B] gi|319744748|gb|EFV97090.1| DNA-binding response regulator [Streptococcus agalactiae ATCC 13813] Length = 236 Score = 149 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 48/232 (20%), Positives = 97/232 (41%), Gaps = 16/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + + D+ ++ L L Sbjct: 4 ILIVDDEKPISDIIKFNLTKEGYETATAFDGREALVQYAEFQPDLIILDLML--PELDGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + +R S +P+I +S S + + G DD V KP +RE+LARV A RR + Sbjct: 62 EVAKEVRKTSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTEN 121 Query: 122 SNN------------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 G +++ D + +GE L RE +L +L + G+ + Sbjct: 122 IETAVAEESAQNASSDITIGELQILPDAFIAKKRGEEIELTHREFELLHHLATHIGQVMT 181 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + + ++G +D + V+ + +LR+K+ + + + ++R +GY + Sbjct: 182 REHLLETVWG-YDYFGDVRTVDVTVRRLREKIEDTPGRPEYILTRRGVGYYM 232 >gi|254414285|ref|ZP_05028052.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] gi|196178960|gb|EDX73957.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] Length = 250 Score = 149 bits (375), Expect = 4e-34, Method: Composition-based stats. Identities = 47/230 (20%), Positives = 92/230 (40%), Gaps = 12/230 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS-----AREDVSAIEAFLIGK 56 ++++D L+++ + ++G + L S S + L+ Sbjct: 21 ILVVEDETLIREMLMLSLQEEGYDVVTAADGRTALTLLSEGDANDEECQFSLLILDLMLP 80 Query: 57 GEKVLELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 L+L R+I + +P++ +S S + + G DD + KP RE++AR A+ Sbjct: 81 QVNGLDLCRLIRYKGNSIPILILSAKASETDRVLGLEVGADDYLTKPFSMRELIARCRAL 140 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVF----PLPRRERRILEYLMANRGKRVAKT 171 RR + ++ E + V L +E R+LE M + ++ Sbjct: 141 LRRHRYNSIPQTPTLQLRDITLYPEECRVTVRGEEVNLSPKEFRLLELFMGYPRRVWSRE 200 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 Q+ ++G D + V+ HI LR+KL + + + + R GY Sbjct: 201 QLIDQVWGA-DFLGDTKTVDVHIRWLREKLEKDPSQPEYLITVRGFGYRF 249 >gi|161075795|gb|ABX56645.1| DNA binding copper response regulator [Methylacidiphilum infernorum V4] Length = 223 Score = 149 bits (375), Expect = 4e-34, Method: Composition-based stats. Identities = 44/221 (19%), Positives = 94/221 (42%), Gaps = 5/221 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + ++G +++ + + + + D + ++ L G + Sbjct: 4 LVVEDELKIARFISRALEEEGFTVDCCSRGDEALLMMLATPYDAAVLDIMLPGP--DGIS 61 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R +R P++ +S + ++ +SG DD + KP E++AR+ A+ RR Sbjct: 62 VLRSLRERGISLPILLLSARSETRDKIEGLNSGADDYLPKPFSMDELVARLRALIRRTAG 121 Query: 122 SNNRAETGPIRVFS-DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + R+ + L +E ILE LM G+ +TQ+ ++ Sbjct: 122 IGLSVYKVGNLTLNLLTREVFRGQKKIELTAKEFSILELLMRTPGRVFTRTQVCERVW-N 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + N+V+ +I KLRKK+ + + R +GY I+ Sbjct: 181 YHFDPGTNLVDVYIQKLRKKIDEGEEQKLIQTVRGVGYKIE 221 >gi|222524928|ref|YP_002569399.1| winged helix family two component transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|222448807|gb|ACM53073.1| two component transcriptional regulator, winged helix family [Chloroflexus sp. Y-400-fl] Length = 245 Score = 149 bits (375), Expect = 4e-34, Method: Composition-based stats. Identities = 39/226 (17%), Positives = 84/226 (37%), Gaps = 9/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD + + D+ ++ Sbjct: 21 ILVADDDPSIGRLIQTALPTQQYETTVVANGLEALEAFERETYDLIFLDVM--MPFVDGF 78 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116 + IRA S VP++ I+ + F G D+ + KP E +AR Sbjct: 79 DACERIRAKSDVPIVIITAREGTDDIVQGFRRGADEYITKPFKVAEFVARVEAILRRVDM 138 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 ++ + + + G + + + V+G+ L E +L +L AN G+ + +F Sbjct: 139 QKARTAPTFVQVGELVIDAAAHKVAVRGKEVKLTPMEFELLYFLAANAGQVFTREVLFRE 198 Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 ++G ++ E N+V+ + +LR+K+ + + R +GY ++ Sbjct: 199 VWG-YEYVGETNLVDVCVRRLREKVEVEPSKPKIITTVRGVGYKLE 243 >gi|71909179|ref|YP_286766.1| phosphate regulon transcriptional regulatory protein phoB [Dechloromonas aromatica RCB] gi|71848800|gb|AAZ48296.1| Phosphate regulon transcriptional regulatory protein phoB [Dechloromonas aromatica RCB] Length = 228 Score = 149 bits (375), Expect = 4e-34, Method: Composition-based stats. Identities = 50/224 (22%), Positives = 95/224 (42%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D +++ G + S E E +A D+ ++ L G+ + Sbjct: 5 ILVVEDEPAIQELVTINLKHAGFLVVRAGSAEEAESAIRAALPDLVILDWML--PGQSGV 62 Query: 62 ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 L + IRA + P+I ++ + + ++G DD + KP +E++ARV A+ RR Sbjct: 63 ALAKKIRADERTRELPIIMLTARVHEEDKVQGLEAGADDYITKPFSPKEMVARVRAVLRR 122 Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 E G + + G+ L E R+L + M + + + Q+ Sbjct: 123 RAPHLAGEAVEIGTLALNPATHRVLASGQPIELGPTEFRLLFFFMTHAERVYTRAQLLDE 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G +EE V+ HI +LR L N + V++ R GY Sbjct: 183 VWGDH-VFIEERTVDVHIRRLRAALENSGNHERVETVRGTGYRF 225 >gi|315612769|ref|ZP_07887680.1| DNA-binding response regulator [Streptococcus sanguinis ATCC 49296] gi|315314879|gb|EFU62920.1| DNA-binding response regulator [Streptococcus sanguinis ATCC 49296] Length = 218 Score = 149 bits (375), Expect = 4e-34, Method: Composition-based stats. Identities = 49/220 (22%), Positives = 98/220 (44%), Gaps = 6/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++++G D G + SS + ++ L Sbjct: 3 ILIVEDEEMIREGISDYLTDCGYETIEAADGQEALEKFSSHEVALVLLDI--QMPKLNGL 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ IR SQVP++ ++ + + + F S D + KP + RV AI++R Sbjct: 61 EVLAEIRKTSQVPVLMLTAFQDEEYKMSAFASLADGYLEKPFSLSLLKVRVDAIFKRYYD 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + +V + + G+ + +E IL+YL+ N G+ + ++QI A++ Sbjct: 121 TGRVFSYKDTKVDFESYSASLAGQEVAINAKELEILDYLVKNEGRALTRSQIIDAVWKAT 180 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 DE + V++ +I +LRKKL D + + R +GY ++ Sbjct: 181 DEVPFDRVIDVYIKELRKKLDL----DCILTVRNVGYKLE 216 >gi|332653383|ref|ZP_08419128.1| DNA-binding response regulator [Ruminococcaceae bacterium D16] gi|332518529|gb|EGJ48132.1| DNA-binding response regulator [Ruminococcaceae bacterium D16] Length = 230 Score = 149 bits (375), Expect = 4e-34, Method: Composition-based stats. Identities = 44/225 (19%), Positives = 83/225 (36%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + D G + S D+ ++ L G Sbjct: 6 ILVVEDDQDINRLLCTILNDAGYFSQSAFSGSEAMLWAEKEGFDLVLLDLML--PGLTGE 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115 E +R H +P+I +S ++ + G DD + KP ++E+ R Sbjct: 64 EFIAKVRQHGTMPIIVLSAKAGVEDRVKVLRLGADDFIPKPFDNQEVLARVEAQLRRVKK 123 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + R G + + + +G L RE IL LM + + QI+ Sbjct: 124 FSAPPEKKQRFVCGDLCLDREEFTVTAEGNPVTLTAREFEILALLMEYPKRVFTREQIYQ 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G D ++N V HIS LR KL + + + +G+ + Sbjct: 184 HVWGE-DYFGDDNTVNVHISNLRSKLGKVSKQEFIKTVWGIGFKM 227 >gi|255524870|ref|ZP_05391819.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|255511440|gb|EET87731.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] Length = 228 Score = 149 bits (375), Expect = 4e-34, Method: Composition-based stats. Identities = 42/223 (18%), Positives = 88/223 (39%), Gaps = 3/223 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 L++D + I L +G ++ + + + D++ I+ L Sbjct: 4 IFLVEDDKAIAKNLILLLRSEGFTVTHAPTRSEALAALAGNKFDLALIDISL--PDGNGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + +P+I ++ + + + G DD V KP RE++AR+ R+ Sbjct: 62 TVCTETKETQDIPVIFLTASGDESSVVTGLNMGADDYVTKPFRPRELIARIRTALRKSGC 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 S + +E + V + G L E R+L + N + + ++ ++ Sbjct: 122 SPSASEICGLHVDMASGVVKKDGSEVFLSALEYRLLLVFINNPKSIITRARLLDELWDAA 181 Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223 E V +N + +I +LR+K+ N + + R GY + N Sbjct: 182 GEFVNDNTLTVYIKRLREKIENNPTSPQIILTVRGTGYRLGDN 224 >gi|229055102|ref|ZP_04195532.1| Two-component response regulator [Bacillus cereus AH603] gi|228721250|gb|EEL72776.1| Two-component response regulator [Bacillus cereus AH603] Length = 233 Score = 149 bits (375), Expect = 4e-34, Method: Composition-based stats. Identities = 45/230 (19%), Positives = 89/230 (38%), Gaps = 11/230 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ ++G + E + + ++ + Sbjct: 6 ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRILEENEVHLVVLDIM--MPKVDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + +R ++P+I +S + +G DD V KP + E++AR+ + RR Sbjct: 64 HMCMKVREAKEMPIIMLSAKTQDMDKILGLTTGADDYVAKPFNPLELIARIKSQLRRYMK 123 Query: 122 SNNRAETG-------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N A +++ V+GE L RE ILE L N G + QI+ Sbjct: 124 MNGFAIQNEDELEIGDMKINISTHKVIVEGEEVKLTPREFSILELLARNPGVVFSAEQIY 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223 ++ +N V HI K+R+K+ + + +GY I+ + Sbjct: 184 EKVWNERSFQ-SDNTVMVHIRKVREKIEENPRKPRYIKTVWGVGYKIEKD 232 >gi|87301695|ref|ZP_01084535.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. WH 5701] gi|87283912|gb|EAQ75866.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. WH 5701] Length = 268 Score = 149 bits (375), Expect = 4e-34, Method: Composition-based stats. Identities = 55/230 (23%), Positives = 100/230 (43%), Gaps = 16/230 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD A V+ + G + E L + D+ ++ L Sbjct: 27 LVVDDEATVRRVLVMRLQLAGYRVVCAEDGEQALSLFHDEQPDLVVLDVML--PKLDGFA 84 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +RA S VP+I +S ++ + D G DD + KP +E+ AR+A I RR+ Sbjct: 85 VCRRLRAESCVPIIFLSALDAIAERVAGLDLGADDYLPKPFSPKELEARIATILRRVGRG 144 Query: 123 NNRAETGPIR------------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + AE+ + V ++ R +GE L E +LE L + G+ V + Sbjct: 145 SAAAESRDVPAGQGVLRVGDLVVDTNRRQVTREGERIGLTYTEFSLLELLFRDPGRVVPR 204 Query: 171 TQIFSAIYG-LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218 +I ++G A + VV+ ++++LR KL + + + + R GY Sbjct: 205 AEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGTGY 254 >gi|302544744|ref|ZP_07297086.1| DNA-binding response regulator MtrA [Streptomyces hygroscopicus ATCC 53653] gi|302462362|gb|EFL25455.1| DNA-binding response regulator MtrA [Streptomyces himastatinicus ATCC 53653] Length = 225 Score = 149 bits (375), Expect = 4e-34, Method: Composition-based stats. Identities = 50/222 (22%), Positives = 93/222 (41%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D ++ G + + E L R D+ ++ L G Sbjct: 4 LLLIEDDDAIRTALELSLSRQGHRVATAATGEDGLKLLREQRPDLIVLDVML--PGIDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR Q+P+I ++ + +SG DD V KP+ R + AR+ A+ RR + Sbjct: 62 EVCRRIRRTDQLPIILLTARNDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGER 121 Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 N A + + GE L E R+L L G+ +++ Q+ ++ Sbjct: 122 EANDAASFGSLVIDRAAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVW-E 180 Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 D + +V++ + +LR K+ + + + R +GY +D Sbjct: 181 HDYLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRLD 222 >gi|209544812|ref|YP_002277041.1| two component transcriptional regulator PhoB, winged helix family [Gluconacetobacter diazotrophicus PAl 5] gi|209532489|gb|ACI52426.1| two component transcriptional regulator PhoB, winged helix family [Gluconacetobacter diazotrophicus PAl 5] Length = 243 Score = 149 bits (375), Expect = 4e-34, Method: Composition-based stats. Identities = 47/221 (21%), Positives = 83/221 (37%), Gaps = 2/221 (0%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++++D + G + E + R D+ ++ L G G V Sbjct: 20 ILVVEDDEALLMMLRYNLEKLGYEVGVAEDGEQALARVAVRRPDLMVLDWMLPGLSGLDV 79 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 R A +P+I ++ + D G DD V KP + AR+ A+ RR Sbjct: 80 CRRLRDQEATRTLPIIMLTARAGEADHIRGLDIGADDYVTKPCSIEALQARIRALMRRAP 139 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + + + E G L E RILE+ + + + ++ + ++ Sbjct: 140 PAEQMLSFADVTLDTVAHRAERNGRQLTLGPTEYRILEFFLRHPRQVFSREDLLQRVW-E 198 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 VE V+ HI +LR L D V + R GY++D Sbjct: 199 RGVHVEPRTVDVHIRRLRLILNGPGEADIVRTVRAAGYALD 239 >gi|85703117|ref|ZP_01034221.1| phosphate regulon transcriptional regulatory protein PhoB [Roseovarius sp. 217] gi|85672045|gb|EAQ26902.1| phosphate regulon transcriptional regulatory protein PhoB [Roseovarius sp. 217] Length = 229 Score = 149 bits (375), Expect = 4e-34, Method: Composition-based stats. Identities = 49/221 (22%), Positives = 92/221 (41%), Gaps = 4/221 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVL 61 +L++D ++ DG + ++ E + S D+ ++ + G +V Sbjct: 9 LLVEDEPAQREVLGYNLQADGFHVLTASNGEEALLMVSEMPPDIIVLDWMMPNVSGIEVC 68 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + +P+I +S + ++G DD V KP E++ARV A RR + Sbjct: 69 RQLKTRSETRGIPIIMLSARSEEVDRVRGLETGADDYVIKPYSLVELMARVRAQLRRTRP 128 Query: 122 SNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + I + ++ + L E R+L M G+ ++ Q+ ++G Sbjct: 129 ATVGERLEYLDIVLDAETHRVTRSEKPLKLGPTEFRLLSTFMEKPGRVWSREQLLDRVWG 188 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D V+ V+ HI +LRK L G DP+ + R GY++ Sbjct: 189 R-DIYVDTRTVDVHIGRLRKALCQYGGEDPLRTVRGAGYAL 228 >gi|302672185|ref|YP_003832145.1| two component system response regulator [Butyrivibrio proteoclasticus B316] gi|302396658|gb|ADL35563.1| two component system response regulator [Butyrivibrio proteoclasticus B316] Length = 233 Score = 149 bits (375), Expect = 4e-34, Method: Composition-based stats. Identities = 40/229 (17%), Positives = 86/229 (37%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + N E + ++ ++ L G Sbjct: 7 ILIVDDDNNIAELISLYLIKECFETRICNDGESAINTFDTFEPNLVLLDLML--PGIDGY 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARVA 113 ++ R IR SQVP+I +S + + + G DD + KP +E + Sbjct: 65 QVCREIRTKSQVPIIMLSAKGEVFDKVLGLEMGADDYMEKPFDSKELVARVKAVLRRYKP 124 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + + + + + GE +P +E +L +L A+ + Q+ Sbjct: 125 QVQEIQESDDKVVRYPDLEINMTNYSVKYMGERVDMPPKELELLYFLAASPNHVFTREQL 184 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 I+G ++ + V+ HI +LR+KL + + + +GY + Sbjct: 185 LDQIWG-YEYIGDTRTVDVHIKRLREKLSDH-EKWRLATIWGIGYKFEV 231 >gi|225387787|ref|ZP_03757551.1| hypothetical protein CLOSTASPAR_01557 [Clostridium asparagiforme DSM 15981] gi|225046121|gb|EEG56367.1| hypothetical protein CLOSTASPAR_01557 [Clostridium asparagiforme DSM 15981] Length = 229 Score = 149 bits (375), Expect = 4e-34, Method: Composition-based stats. Identities = 48/227 (21%), Positives = 88/227 (38%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G +E N+ + D+ ++ L G Sbjct: 4 ILIVEDEESIAELEKDYLELSGFEVEIENNGSSGLERALNEEFDLFILDLML--PGTDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 E+ + IR P+I +S + G DD + KP E++ARV A R Sbjct: 62 EICKKIREVKNTPIIMVSAKKEDIDKIRGLGLGADDYITKPFSPSEMVARVKAHMARYER 121 Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + SN E +++ R V GE +E +L +L N K ++F Sbjct: 122 LIGSGQPSNEIVEIRGLKIDKTARRVWVNGEEKTFTTKEFDLLSFLAQNPNHVFTKEELF 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 S I+ + + + V HI K+R+K+ N +++ +GY Sbjct: 182 SKIWDM-ESIGDIATVTVHIKKIREKIEFNTAKPQYIETIWGVGYRF 227 >gi|37548744|gb|AAN07017.1| putative response regulator [Bacillus subtilis] Length = 245 Score = 149 bits (375), Expect = 4e-34, Method: Composition-based stats. Identities = 45/225 (20%), Positives = 92/225 (40%), Gaps = 10/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD + + + +G+ + ++ D+ ++ L + Sbjct: 19 LIIDDEKEILELIKTVLIREGIDRVITASTARDGLAQFHQENSDLVILDIML--PDGEGY 76 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-----Y 116 ++ + IR S VP+I +S + G DD + KP +E+ RV A Y Sbjct: 77 DICKQIRDISHVPIIFLSAKGEETDKIVGLAIGGDDYITKPFSPKEVAYRVKAQLRRVSY 136 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + + GP + + G L +E ++ Y + + + ++K ++ A Sbjct: 137 LQPSQTGTVIKKGPFELNQQQAELTKNGAAIELTPKELMLMTYFLQHPNRVISKETLYQA 196 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++G D +N V HI +LR+K+ N D + + + LGY Sbjct: 197 VWGE-DFFGSDNTVMVHIRRLREKIENTPSKPDFLVTVKGLGYKF 240 >gi|83814442|ref|YP_446396.1| response regulator DrrA [Salinibacter ruber DSM 13855] gi|294508333|ref|YP_003572391.1| response regulator DrrA [Salinibacter ruber M8] gi|83755836|gb|ABC43949.1| response regulator DrrA [Salinibacter ruber DSM 13855] gi|294344661|emb|CBH25439.1| response regulator DrrA [Salinibacter ruber M8] Length = 236 Score = 149 bits (375), Expect = 4e-34, Method: Composition-based stats. Identities = 30/227 (13%), Positives = 76/227 (33%), Gaps = 13/227 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 +++DD + +G + D+ ++ + G +V Sbjct: 13 ILVVDDEEDLLSLVEYNLEQEGFGVLLARDGVEALEQAREHDPDLIILDIMMPKMDGIEV 72 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDV-------VNKPIHHREILARVA 113 + R +P++ ++ + D G D + +L Sbjct: 73 CQKLRKDAHLRTIPIMMLTARNEEDDKVQGLDVGADIYLGKPVSVSVIVSQTKALLRSAH 132 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + ++ PR+E +L +L ++ G+ ++ +I Sbjct: 133 RYEDPPDQIEVHNLRVDRDRYLVYQENGDGETEMRFPRKEFELLYFLASHPGRVFSRQEI 192 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G V+ V+ HI K+R+K+ G + +++ + +GY + Sbjct: 193 LDEVWGRDVYVVD-RTVDVHIRKIREKI----GSEYIETVKGVGYRM 234 >gi|226329135|ref|ZP_03804653.1| hypothetical protein PROPEN_03038 [Proteus penneri ATCC 35198] gi|225202321|gb|EEG84675.1| hypothetical protein PROPEN_03038 [Proteus penneri ATCC 35198] Length = 229 Score = 149 bits (375), Expect = 4e-34, Method: Composition-based stats. Identities = 33/224 (14%), Positives = 87/224 (38%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D +++ + +G + D+ ++ + G L Sbjct: 5 ILVVEDETAIREMICFVLEQNGFQPIEAEDYDSALSFLIDPYPDLVLLDWMI--PGGSGL 62 Query: 62 ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIY 116 ++ + ++ S +P+I ++ + + ++G DD V KP +E+ + Sbjct: 63 QIIKQMKRESNTRDIPIIMLTAKGEEEDKVQGLETGADDYVIKPFSPKELVARVKAILRR 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + E + + Q + + E ++L + M + + ++ Q+ + Sbjct: 123 LSPMSAEDVIEFNGLSLDPVSHRVTSQDKPIDMGPTEFKLLHFFMTHPERVYSREQLLNY 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + VE+ V+ HI +LRK + + + R GY Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKAIEEDGHDRMIQTVRGTGYRF 225 >gi|75760731|ref|ZP_00740754.1| Two-component response regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74491786|gb|EAO54979.1| Two-component response regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 233 Score = 149 bits (375), Expect = 4e-34, Method: Composition-based stats. Identities = 46/229 (20%), Positives = 89/229 (38%), Gaps = 11/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D + + + ++ +S E + D+ ++ L Sbjct: 8 ILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQIALQEDYDLIILDIML--PKMNGF 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IRA +P++ +S + G DD + KP E++ARV A R + Sbjct: 66 EICKQIRAVKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIARYER 125 Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + I + R + E +E +L + + + + + K Q+F Sbjct: 126 LSGNVSKQRDTLYIHGISIDQRARKVFINNEEVAFTTKEFDLLTFFVTHPNQVLNKEQLF 185 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 I+GL D A + V HI KLR+K+ + +++ GY + Sbjct: 186 ERIWGL-DSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRFNV 233 >gi|295109722|emb|CBL23675.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus obeum A2-162] Length = 227 Score = 149 bits (375), Expect = 4e-34, Method: Composition-based stats. Identities = 45/224 (20%), Positives = 100/224 (44%), Gaps = 6/224 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + ++ + E + + D++ + ++ Sbjct: 6 ILVVDDESRMRKLVKDFLEKKNFHVLEAGDGEEAMDIFYEEK-DIALLILDVMMPKMDGW 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR +S+VP+I ++ + L F+ GVD+ ++KP + ++ARV AI RR Sbjct: 65 EVCREIRKNSKVPIIMLTARGDERDELLGFELGVDEYISKPFSPKILVARVEAILRRTGQ 124 Query: 122 SNNRAETGP--IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 I + V G L +E +L Y + N+G +++ +I ++++ Sbjct: 125 DAGNDVLSAGGIVIDKSAHQATVDGRQMELSFKEFELLTYFLENQGIALSREKILNSVW- 183 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 +D + +++H+ KLR K+ +K + + + +GY + + Sbjct: 184 NYDYFGDARTIDTHVKKLRSKMGDKG--EYIKTVWGMGYKFEVD 225 >gi|212640658|ref|YP_002317178.1| OmpR family DNA-binding response regulator [Anoxybacillus flavithermus WK1] gi|212562138|gb|ACJ35193.1| DNA-binding response regulator, OmpR family (REC-wHTH domains) [Anoxybacillus flavithermus WK1] Length = 236 Score = 149 bits (375), Expect = 4e-34, Method: Composition-based stats. Identities = 45/227 (19%), Positives = 90/227 (39%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + + D+ ++ L K + Sbjct: 7 ILVVDDEKPIADILQFNLRKEGYDVHCAYDGVEALQKVEDIQPDLILLDIMLPQK--DGM 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-------ILARVAA 114 E+ R IR +P+I ++ S + + G DD V KP RE L R Sbjct: 65 EVCREIRKKYDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQ 124 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + + GP+ + D +GE L RE +L YL + G+ + + + Sbjct: 125 RQEQDVKEMSEIKIGPLTIHPDAYTVSKRGEHIELTHREFELLHYLAKHIGQVMTREHLL 184 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++G +D + V+ + +LR+K+ + + ++R +GY + Sbjct: 185 QTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPTWIVTRRGVGYYL 230 >gi|126658592|ref|ZP_01729739.1| OmpR subfamily protein [Cyanothece sp. CCY0110] gi|126620179|gb|EAZ90901.1| OmpR subfamily protein [Cyanothece sp. CCY0110] Length = 235 Score = 149 bits (375), Expect = 4e-34, Method: Composition-based stats. Identities = 33/231 (14%), Positives = 73/231 (31%), Gaps = 12/231 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D + + L D+ ++ L G +V Sbjct: 3 ILIVEDEMEISKLIQTTLERESFECISAYDGLTALDLFQQQAPDLIVLDLMLPKLDGLEV 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILAR 111 R ++ ++ + +G DD + KP E + Sbjct: 63 CTRIRQKLTEKDPYILMLTAKGEEIDRVIGLSTGADDYLVKPFSPIELVARVRALLRRSL 122 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + + + + E L E +L M+ G+ ++T Sbjct: 123 RHGGTQNNVYETPHFIVDLDKYSAIQKTDNNTEEPLELTTLEFNLLSTFMSYPGRVWSRT 182 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 Q+ ++G D +E VV++H+ +LRKK+ + + +GY + Sbjct: 183 QLIDKLWGN-DFFGDERVVDTHVRRLRKKIEPDTANPTYIKTVVGVGYKFE 232 >gi|75760587|ref|ZP_00740619.1| Two-component response regulator ycbL [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228903054|ref|ZP_04067192.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis IBL 4222] gi|228967633|ref|ZP_04128655.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis serovar sotto str. T04001] gi|74491922|gb|EAO55106.1| Two-component response regulator ycbL [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228792069|gb|EEM39649.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis serovar sotto str. T04001] gi|228856589|gb|EEN01111.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis IBL 4222] Length = 241 Score = 149 bits (375), Expect = 4e-34, Method: Composition-based stats. Identities = 42/228 (18%), Positives = 92/228 (40%), Gaps = 10/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D +++ +G + + E + D+ ++ L Sbjct: 16 ILLVEDDISIQEMVEKYLLKEGFQVTMASDGEAGVQTFFKSSFDLVILDIM--MPKLDGL 73 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115 E+ RIIR S VP++ +S + G DD + KP E+ R + Sbjct: 74 EVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 133 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 Y + + + G + + E G L +E IL+ + N+ + K QI++ Sbjct: 134 YSATETTEKMIQIGDLTIDPINFTVEKNGNPLKLTLKEFEILKLFVKNQNRVFTKAQIYT 193 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 ++ + ++NV+ H+ +LR+K+ + + + + +GY ++ Sbjct: 194 LVWNE-EYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLEV 240 >gi|296111034|ref|YP_003621415.1| response regulator [Leuconostoc kimchii IMSNU 11154] gi|295832565|gb|ADG40446.1| response regulator [Leuconostoc kimchii IMSNU 11154] Length = 237 Score = 149 bits (375), Expect = 4e-34, Method: Composition-based stats. Identities = 44/232 (18%), Positives = 93/232 (40%), Gaps = 16/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + + + + + D+ ++ L + Sbjct: 4 ILVVDDEKPISDIIKFNLTKEGYEVITAADGQEALTIFNEEKPDLVLLDQML--PEIDGV 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR+ S+ P+I ++ S + + G DD V KP +RE++ARV A R K Sbjct: 62 EVLRQIRSKSETPVIMVTAKDSEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRSRKA 121 Query: 122 SNNRAETGPI------------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 + G+ L RE +L YL + + + Sbjct: 122 VAQAQNADDSVANTEDIELGDLTIHPQAYMVSKSGQDIELTHREFELLYYLAQHISQVMT 181 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + + ++G +D + V+ + +LR+K+ + + + ++R +GY + Sbjct: 182 REHLLQQVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPNWLATRRGVGYYL 232 >gi|291459772|ref|ZP_06599162.1| regulatory protein VanR [Oribacterium sp. oral taxon 078 str. F0262] gi|291417562|gb|EFE91281.1| regulatory protein VanR [Oribacterium sp. oral taxon 078 str. F0262] Length = 233 Score = 149 bits (375), Expect = 4e-34, Method: Composition-based stats. Identities = 43/230 (18%), Positives = 83/230 (36%), Gaps = 13/230 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + DG + + + + + ++ G LE Sbjct: 7 LVVDDEKEIAELVEIYLVSDGYKVFKAYNADEALLIMKQEEIHLVLLDVM--MPGMNGLE 64 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH---------REILARVA 113 L R IR S +P+I +S + + G DD V KP + + Sbjct: 65 LCRKIRESSNIPIIMLSAKSADLDKIVGLTGGADDYVTKPFNPLELTARVKSQLRRYTQL 124 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + + + + D ++GE L E IL L ++ GK + +I Sbjct: 125 NPNSTNEFAGSEINIRNMTINRDNHKVVIEGEDVRLTPIEFEILYLLASHPGKVFSTDEI 184 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDW 222 F ++ N V HI +LR K+ ++ + + +GY I+ Sbjct: 185 FEKVWNEKVYEAN-NTVMVHIRRLRGKMKEDQRENKIITTVWGVGYKIEK 233 >gi|116625337|ref|YP_827493.1| two component transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116228499|gb|ABJ87208.1| two component transcriptional regulator, winged helix family [Candidatus Solibacter usitatus Ellin6076] Length = 230 Score = 149 bits (375), Expect = 4e-34, Method: Composition-based stats. Identities = 49/227 (21%), Positives = 90/227 (39%), Gaps = 9/227 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++D A + G + A+ D+ ++ L Sbjct: 5 IAIVEDEAELASLIEYNLTRHGYETQILGGGTGTMRALEQAKPDLILLDVML--PDADGF 62 Query: 62 ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 EL R IR A S+ P++ ++ + + G DD + KP RE++ARV A RR Sbjct: 63 ELCRQIRHSSALSRTPVLFLTARSDEVDRVLGLEIGGDDYMTKPFSPRELIARVKAHLRR 122 Query: 119 LKVSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 ++ GP R+ R + G L E +LEY + + G+ ++ Q+ A Sbjct: 123 EEMDAEPGAVGIGPFRLDRTARRVYLNGREISLTSTEFNLLEYFLTHPGRAYSRDQLLEA 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDW 222 ++G V V+ H+ +LR+++ + + R GY + Sbjct: 183 VWGEQRY-VTPRTVDVHVRRLREQIEEQPDAPRYLTTVRGFGYRFEE 228 >gi|69247564|ref|ZP_00604398.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Enterococcus faecium DO] gi|227552548|ref|ZP_03982597.1| VicR family response regulator [Enterococcus faecium TX1330] gi|258614681|ref|ZP_05712451.1| DNA-binding response regulator VicR [Enterococcus faecium DO] gi|293378479|ref|ZP_06624642.1| response regulator receiver domain protein [Enterococcus faecium PC4.1] gi|293553004|ref|ZP_06673649.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1039] gi|293559841|ref|ZP_06676356.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1162] gi|293567713|ref|ZP_06679056.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1071] gi|294616677|ref|ZP_06696447.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1636] gi|294619190|ref|ZP_06698676.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecium E1679] gi|294623110|ref|ZP_06701996.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium U0317] gi|68194788|gb|EAN09265.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Enterococcus faecium DO] gi|227178297|gb|EEI59269.1| VicR family response regulator [Enterococcus faecium TX1330] gi|291589648|gb|EFF21453.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1071] gi|291590431|gb|EFF22170.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1636] gi|291594572|gb|EFF25963.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecium E1679] gi|291597479|gb|EFF28644.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium U0317] gi|291602810|gb|EFF33017.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1039] gi|291606205|gb|EFF35624.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1162] gi|292642808|gb|EFF60955.1| response regulator receiver domain protein [Enterococcus faecium PC4.1] Length = 234 Score = 149 bits (375), Expect = 4e-34, Method: Composition-based stats. Identities = 47/227 (20%), Positives = 94/227 (41%), Gaps = 12/227 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + D +G + E + D+ ++ L LE Sbjct: 5 LVVDDEKPISDIVKFNLAKEGYDVYTAYDGEEALEKVAEVEPDLILLDLML--PKMDGLE 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +R +P+I ++ S + + G DD V KP +RE++ARV A RR + Sbjct: 63 VAREVRKTYDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRGATA 122 Query: 123 NNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 E + + +GE L RE +L YL + G+ + + + Sbjct: 123 AKEPEEAAPAELTIGDLTIHPEAYMVTKRGETIELTHREFELLFYLAKHLGQVMTREHLL 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++G +D + V+ + +LR+K+ + + + ++R +GY + Sbjct: 183 QTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPNYLVTRRGVGYYL 228 >gi|302669412|ref|YP_003829372.1| two component system response regulator [Butyrivibrio proteoclasticus B316] gi|302393885|gb|ADL32790.1| two component system response regulator [Butyrivibrio proteoclasticus B316] Length = 229 Score = 149 bits (375), Expect = 4e-34, Method: Composition-based stats. Identities = 42/227 (18%), Positives = 81/227 (35%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + D ++ N+ + + D+ ++ L G Sbjct: 4 ILIVEDEEAIADLEKDYLELSDFEVKIENTGDAGLETALAEEFDLIILDLML--PGMDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IR VP++ +S + G DD + KP E++ARV A R Sbjct: 62 EVCKHIREKKDVPILMVSAKKDDIDKIRGLGLGADDYITKPFSPSELVARVKAHMARYSR 121 Query: 122 SNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + R V E +E +L +L N K ++F Sbjct: 122 LVGSGHENNDFVEIRGLKIDKTARRVYVDDEEKSFTTKEFDLLTFLAENPNHVFTKEELF 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 I+ + D + V HI K+R+K+ + +++ +GY Sbjct: 182 RKIWNM-DSIGDIATVTVHIKKIREKIEYDTSNPQYIETIWGVGYRF 227 >gi|17351926|gb|AAL38199.1|AF319443_1 putative response regulator RR23 [Listeria monocytogenes] Length = 225 Score = 149 bits (375), Expect = 4e-34, Method: Composition-based stats. Identities = 37/223 (16%), Positives = 81/223 (36%), Gaps = 5/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +G + + E + + + ++ I+ Sbjct: 4 ILVVDDDRHILKLVGHYLRAEGFHVLEASDGVEAEKIVETEQVHLAVIDVM--MPNMDGF 61 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL + +RA + +P+I ++ +L F+ G DD V KP E++ + Y Sbjct: 62 ELCQKMRASYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELIFQFVRCYGVPI 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPR-RERRILEYLMANRGKRVAKTQIFSAIYG 179 T + G + +E +L L + G+ + ++ I+ Sbjct: 122 KQAKSKSTSETLLSIKKATALKIGNQERMIPVKEFELLYQLASYPGRIFTREELIERIW- 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 D + V+ HI +LR + + + R +GY ++ Sbjct: 181 QRDYDGSDRTVDVHIKRLRDHFDEEKDGIRIVTVRGVGYKLEE 223 >gi|89893889|ref|YP_517376.1| hypothetical protein DSY1143 [Desulfitobacterium hafniense Y51] gi|89333337|dbj|BAE82932.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 230 Score = 149 bits (375), Expect = 4e-34, Method: Composition-based stats. Identities = 52/221 (23%), Positives = 98/221 (44%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + G +G ++ L + R D+ ++ L Sbjct: 9 ILIIEDEEKIARFVELELGYEGYNVTKAFDGRTGLELAETGRFDLILLDVML--PKLNGT 66 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR S VP+I ++ S+ + DSG +D + KP E+LAR+ R Sbjct: 67 EVLRRIRRTSAVPIIMLTARDSVMDKVSGLDSGANDYITKPFAIEELLARIRNALRNTAP 126 Query: 122 SNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++ + +D R ++G+ L +RE +L +L+ N+G +++ + ++G Sbjct: 127 LSSTEVLSASGLELDADRRTVTMRGKPVDLTKREFDLLHFLLKNKGIVLSRESLLENVWG 186 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 FD A + N V+ +I LR K+ + + R +GY I Sbjct: 187 -FDFAGDTNAVDVYIRFLRGKIDEVFNLKFIHTVRGVGYVI 226 >gi|317130982|ref|YP_004097264.1| two component transcriptional regulator, winged helix family [Bacillus cellulosilyticus DSM 2522] gi|315475930|gb|ADU32533.1| two component transcriptional regulator, winged helix family [Bacillus cellulosilyticus DSM 2522] Length = 235 Score = 149 bits (375), Expect = 4e-34, Method: Composition-based stats. Identities = 47/226 (20%), Positives = 93/226 (41%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D DG + + + D+ ++ L + + Sbjct: 6 ILVVDDEQPIADILKFGLEKDGYEVICAYDGNEAIEMTNKHEPDLILLDIML--PYQDGM 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R +P+I ++ S + + G DD V KP RE++ARV A RR + Sbjct: 64 EVCREVRKKFDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELVARVKANLRRNQK 123 Query: 122 SNNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 S D +GE L RE ++ YL + G+ + + + Sbjct: 124 SKEPDTEKKNIQIGALLIQPDAYLVSKRGEPIELTHREFELVYYLAKHIGQVMTREHLLQ 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 A++G +D + V+ + +LR+K+ + + ++R +GY + Sbjct: 184 AVWG-YDYFGDVRTVDVTVRRLREKVEDDPSNPTWIITRRGVGYYL 228 >gi|239988860|ref|ZP_04709524.1| putative two-component systen response regulator [Streptomyces roseosporus NRRL 11379] Length = 246 Score = 149 bits (375), Expect = 4e-34, Method: Composition-based stats. Identities = 43/231 (18%), Positives = 89/231 (38%), Gaps = 15/231 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V++ +G + + + D+ ++ L Sbjct: 11 ILIVDDEPAVREALRRSLAFEGYGTQVAVDGYDALAMAEAYAPDLIVLDI--QMPRMDGL 68 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------- 113 R IRA S P++ ++ ++ + D+G DD + KP E+ AR+ Sbjct: 69 TAARRIRATGSTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSS 128 Query: 114 ----AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 A ++ +R+ R+ L R E +LE +++ + + Sbjct: 129 YASAAAAGAEAPDDDVLSFADLRMDLATREVTRGERRVELTRTEFTLLEMFLSHPRQVLT 188 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + QI A++G FD N ++ ++ LR+K V + R +GY++ Sbjct: 189 REQILKAVWG-FDFEPSSNSLDVYVMYLRRKTEAGGEPRLVHTVRGVGYAL 238 >gi|271967658|ref|YP_003341854.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270510833|gb|ACZ89111.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 237 Score = 149 bits (375), Expect = 4e-34, Method: Composition-based stats. Identities = 40/227 (17%), Positives = 86/227 (37%), Gaps = 12/227 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD +++ + +G + + + ++ ++ L Sbjct: 10 LVVDDEPALREALQSSLEYEGYRVGLASDGLAALEILEREPYELVLLDVM--MPRLDGLT 67 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARVA 113 R +RA P++ ++ ++ + D+G DD + KP E + Sbjct: 68 ACRRLRAAGNHVPVLMLTARDAVGDRVSGLDAGADDYLVKPFELDELLARVRALLRRSAL 127 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 G +R+ + R+ GE L R E +LE LM + + + + QI Sbjct: 128 TAPAAADDDGGVLLHGDLRMDTASREVTRAGEPLELTRTEYLLLELLMVHPRQVLTREQI 187 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 S ++G FD N ++ ++ LR+K + + R +GY + Sbjct: 188 LSEVWG-FDFEPSSNSLDVYVMYLRRKTEAAGRSRLIHTVRGVGYVL 233 >gi|159027076|emb|CAO89261.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 250 Score = 149 bits (375), Expect = 4e-34, Method: Composition-based stats. Identities = 50/232 (21%), Positives = 95/232 (40%), Gaps = 16/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA-------REDVSAIEAFLI 54 ++++D +++D I ++G G + L S R D+ ++ L Sbjct: 21 ILIVEDEEVIRDMIILALEEEGYEALGVSDGRAALELLQSQESNHGESRFDLVVLDLMLP 80 Query: 55 -GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113 G + L R + +P++ +S S + + G DD + KP RE++AR Sbjct: 81 QISGLDICRLLR--YHGNIIPILILSAKASETDRVLGLEVGADDYLTKPFSMRELVARCR 138 Query: 114 AIYRRLKVSNNRAETGPIRVF----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 A+ RR ++ A + V+ E L +E R+L+ M+ + + Sbjct: 139 ALIRRQGFTSLAAAPVRKFRDVLLYTQECRVTVRHEEINLSPKEFRLLDLFMSYPRRVWS 198 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + Q+ I+G D + V+ HI LR+KL + + + + R GY Sbjct: 199 REQLIEQIWG-PDFLGDTKTVDVHIRWLREKLEIDPSQPEYLITVRGFGYRF 249 >gi|149021563|ref|ZP_01835618.1| DNA-binding response regulator VncR [Streptococcus pneumoniae SP23-BS72] gi|147930259|gb|EDK81244.1| DNA-binding response regulator VncR [Streptococcus pneumoniae SP23-BS72] Length = 218 Score = 149 bits (375), Expect = 4e-34, Method: Composition-based stats. Identities = 50/220 (22%), Positives = 102/220 (46%), Gaps = 6/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++++G D G + L+ + +V+ + + L Sbjct: 3 ILIVEDEEMIREGVSDYLTDCGYETIEAADGQEA--LEQFSSYEVALVLLDIQMPKLNGL 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ IR SQVP++ ++ + + + F S D + KP + RV AI++R Sbjct: 61 EVLAEIRKTSQVPVLMLTAFQDEEYKMSAFASLADGYLEKPFSLSLLKVRVDAIFKRYYD 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + +V + + G+ P+ +E IL+YL+ N G+ + ++QI A++ Sbjct: 121 TGRIFSYKATKVDFESYSASLAGQEVPINAKELEILDYLVKNEGRALTRSQIIDAVWKAT 180 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 DE + V++ +I +LRKKL D + + R +GY ++ Sbjct: 181 DEVPFDRVIDVYIKELRKKLDL----DCILTVRNVGYKLE 216 >gi|317507256|ref|ZP_07965002.1| response regulator receiver domain-containing protein [Segniliparus rugosus ATCC BAA-974] gi|316254450|gb|EFV13774.1| response regulator receiver domain-containing protein [Segniliparus rugosus ATCC BAA-974] Length = 228 Score = 149 bits (375), Expect = 4e-34, Method: Composition-based stats. Identities = 54/226 (23%), Positives = 101/226 (44%), Gaps = 10/226 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + D L +G D+ ++ L G + Sbjct: 5 LIVEDEESLADPLAFLLRKEGFETVIAGDGPTALTEFDRTGADIVLLDLML--PGMGGND 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + +RA S VP+I ++ S + + G DD V KP RE+ AR+ A+ RR + + Sbjct: 63 VCKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELTARIRAVLRRGQEA 122 Query: 123 NNRAETG------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + PI++ D V G+ LP +E +LEYLM NRG+ + + Q+ Sbjct: 123 ESETSLDGALEAGPIKLDVDRHLVSVHGKQVTLPLKEFDLLEYLMRNRGRVLTRGQLIDR 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221 ++G D + ++ H+ +LR K+ + + + + R LGY ++ Sbjct: 183 VWGA-DYVGDTKTLDVHVKRLRSKIEDDPAKPERLVTVRGLGYKLE 227 >gi|33860694|ref|NP_892255.1| two-component response regulator [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|123965397|ref|YP_001010478.1| two-component response regulator [Prochlorococcus marinus str. MIT 9515] gi|33633636|emb|CAE18593.1| two-component response regulator [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|123199763|gb|ABM71371.1| two-component response regulator [Prochlorococcus marinus str. MIT 9515] Length = 248 Score = 149 bits (375), Expect = 4e-34, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 90/228 (39%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD A ++ G + + L D+ ++ Sbjct: 11 ILVADDEASIRRILETRLSMIGYKVVTACDGKEALKLFKDYDPDLVVLDVM--MPKLDGY 68 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + +R S VP++ ++ + + + G DD V KP +E+ AR+ + RR+ Sbjct: 69 GVCQELRKDSDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRIDK 128 Query: 122 SNNRAETG-------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 I++ ++ R E L E +LE L++ G+ ++ +I Sbjct: 129 EQLPGMPNSGLILVTDIKIDTNRRQVFKSDERIRLTGMEFSLLELLVSRSGEPFSRGEIL 188 Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++G + V+ VV+ HIS+LR KL + + + + R GY Sbjct: 189 KEVWGYTPERHVDTRVVDVHISRLRSKLEADPANPELILTARGTGYLF 236 >gi|152968913|ref|YP_001334022.1| transcriptional regulator PhoB [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206576178|ref|YP_002240146.1| phosphate regulon transcriptional regulatory protein PhoB [Klebsiella pneumoniae 342] gi|238893323|ref|YP_002918057.1| transcriptional regulator PhoB [Klebsiella pneumoniae NTUH-K2044] gi|262042405|ref|ZP_06015566.1| phosphate regulon response regulator [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|288936893|ref|YP_003440952.1| two component transcriptional regulator, winged helix family [Klebsiella variicola At-22] gi|290510051|ref|ZP_06549421.1| phosphate regulon transcriptional regulatory protein PhoB [Klebsiella sp. 1_1_55] gi|330006877|ref|ZP_08305751.1| phosphate regulon transcriptional regulatory protein PhoB [Klebsiella sp. MS 92-3] gi|1172481|sp|P45605|PHOB_KLEPN RecName: Full=Phosphate regulon transcriptional regulatory protein phoB gi|149295|gb|AAA25122.1| phosphate regulatory protein phoB [Klebsiella pneumoniae] gi|150953762|gb|ABR75792.1| positive response regulator for pho regulon, sensor is PhoR (or CreC) [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206565236|gb|ACI07012.1| phosphate regulon transcriptional regulatory protein PhoB [Klebsiella pneumoniae 342] gi|238545639|dbj|BAH61990.1| positive response regulator for pho regulon [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259040237|gb|EEW41347.1| phosphate regulon response regulator [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|288891602|gb|ADC59920.1| two component transcriptional regulator, winged helix family [Klebsiella variicola At-22] gi|289776767|gb|EFD84765.1| phosphate regulon transcriptional regulatory protein PhoB [Klebsiella sp. 1_1_55] gi|328535683|gb|EGF62130.1| phosphate regulon transcriptional regulatory protein PhoB [Klebsiella sp. MS 92-3] Length = 229 Score = 149 bits (375), Expect = 4e-34, Method: Composition-based stats. Identities = 39/222 (17%), Positives = 93/222 (41%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D A +++ + +G + + D+ ++ L G G + Sbjct: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGLQF 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++L + +P++ ++ + + ++G DD + KP +E++AR+ A+ RR+ Sbjct: 65 IKLLKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS 124 Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 E + + + E ++L + M + + ++ Q+ + ++ Sbjct: 125 PMAVEEVIEMQGLSLDPSSHRVMTGDSPLDMGPTEFKLLHFFMTHPERVYSREQLLNHVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G + VE+ V+ HI +LRK L + V + R GY Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALEHSGHDRMVQTVRGTGYRF 225 >gi|299143988|ref|ZP_07037068.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518473|gb|EFI42212.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 230 Score = 149 bits (375), Expect = 4e-34, Method: Composition-based stats. Identities = 41/224 (18%), Positives = 92/224 (41%), Gaps = 9/224 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D ++ +G + + E + ++ ++ L G Sbjct: 5 ILLVEDEDAIRKFVKINLEREGYDVYEAPTGEDGVAIAREVHPEIVVLDVML--PGIDGF 62 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ RI+R ++ ++ ++ + G DD + KP + E+ R+ ++ RRL+ Sbjct: 63 EVCRILRGEFPELGIVMLTAKTEDYDKIMGLQYGTDDYLTKPFNPTELTLRIKSLERRLE 122 Query: 121 VSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + P ++ + R E L E +I++ M N GK + + +I + Sbjct: 123 PEEHTNKNLIIFPPFKLDTYSRKFYKGDEELELTPTEYQIMKNFMQNPGKALNRDEILNL 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219 ++G D + +V+ +I +LR K+ +++ LGY Sbjct: 183 VWGE-DFVGDSKIVDVNIRRLRSKIEENAAKPKFIETVWGLGYR 225 >gi|229190002|ref|ZP_04317010.1| Two-component response regulator vanR [Bacillus cereus ATCC 10876] gi|228593494|gb|EEK51305.1| Two-component response regulator vanR [Bacillus cereus ATCC 10876] Length = 242 Score = 149 bits (375), Expect = 4e-34, Method: Composition-based stats. Identities = 40/229 (17%), Positives = 85/229 (37%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +G + ++ E + ++ ++ ++ + Sbjct: 16 ILIVDDDQDIVQFIKVNLMQEGFKVFSAHNGEEALEIINNNSIQLAILDIM--MPQMDGI 73 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARVA 113 EL R IR +P++ +S S + F +G DD + KP E Sbjct: 74 ELCRRIREKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 133 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 ++V N+ + + R + GE L + E IL + A + + +I Sbjct: 134 FNQNAIQVMENKINIRGLEIDEVSRTVMLYGETMNLTKTEYDILHLMAAAKNRVFTIEEI 193 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + +++ N V HI++LR K+ + + +GY I+ Sbjct: 194 YESVWNERAYE-SNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIE 241 >gi|150388383|ref|YP_001318432.1| two component transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149948245|gb|ABR46773.1| two component transcriptional regulator, winged helix family [Alkaliphilus metalliredigens QYMF] Length = 236 Score = 149 bits (375), Expect = 4e-34, Method: Composition-based stats. Identities = 47/230 (20%), Positives = 97/230 (42%), Gaps = 12/230 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + +G + + D+ ++ L G Sbjct: 6 ILLVEDDENISKIIKLYLEKEGFVVSCCYDGIVACETFLKNKYDLVLLDLML--PGLDGY 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + IR S P+I ++ L+ + G DD V KP E+LAR+ A+ RR++ Sbjct: 64 QVCQKIRETSYTPIIMLTAKGDLEEKVKGLHIGADDYVTKPFEIHELLARIHAMLRRIEQ 123 Query: 122 SNNRAE--------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + D + ++ +PRRE ++L+YLM + + ++ Sbjct: 124 DHEEVNRKEGNRLEYDNLIFDIDAFIIYLNEDIINVPRREAQLLKYLMMYPNQVFKREEL 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSIDW 222 I+G +D E+ V++ +I +LRK+L++K + + +GY + Sbjct: 184 IEGIWG-WDFEGEDRVIDLYIKRLRKRLKSKTKQSWSIKTVWGIGYKFEV 232 >gi|126740199|ref|ZP_01755888.1| two-component response regulator [Roseobacter sp. SK209-2-6] gi|126718654|gb|EBA15367.1| two-component response regulator [Roseobacter sp. SK209-2-6] Length = 227 Score = 149 bits (375), Expect = 4e-34, Method: Composition-based stats. Identities = 42/220 (19%), Positives = 84/220 (38%), Gaps = 4/220 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L+DD +++ + + + D+ ++ L Sbjct: 3 ILLVDDDPRLRELVRIALERADWQVITAADGQEALLHAAREAPDLIVLDIGL--PELDGF 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-AIYRRLK 120 E+ R IR S+VP++ ++ + + G DD V KP RE++AR+ R Sbjct: 61 EVCRRIRQRSEVPILFLTARDDEVDCILGLELGADDYVTKPFSPRELVARIKAIAKRSRA 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 G + + + G+ L RE+ IL+ L G+ +K ++ I+G Sbjct: 121 NGTVPVNHGALTLDPQAHRCWLNGQEIALTAREQSILQLLTKAPGRLCSKPELIHHIWGA 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 V + ++SH+ LR K + +++ G + Sbjct: 181 G-SQVSDRTLDSHLRNLRGKFSEAGNPELIETVHGAGIRL 219 >gi|126651967|ref|ZP_01724159.1| two-component response regulator [Bacillus sp. B14905] gi|126591236|gb|EAZ85345.1| two-component response regulator [Bacillus sp. B14905] Length = 237 Score = 149 bits (375), Expect = 4e-34, Method: Composition-based stats. Identities = 50/230 (21%), Positives = 94/230 (40%), Gaps = 14/230 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + + + D+ ++ L + Sbjct: 5 ILVVDDEKPIADILQFNLIKEGYKVICAYDGDEALKKVEEEQPDLMLLDIML--PKRDGM 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR P+I ++ S + + G DD V KP RE++ARV A RRL+V Sbjct: 63 EVCREIRKKYDFPIIMLTAKGSEIDKVLGLEMGADDYVTKPFSTRELIARVKANMRRLQV 122 Query: 122 SNNRAETGPIR----------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + AE + D + E L RE +L YL + G+ + + Sbjct: 123 AAPAAEEAEEESNEIVVGSLVIQPDAYLVMKRDEAIELTHREFELLHYLGKHIGQVMTRE 182 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + ++G +D + V+ I +LR+K+ + + ++R +GY + Sbjct: 183 HLLQTVWG-YDYFGDVRTVDVTIRRLREKIEDNPSHPAWIVTRRGVGYYL 231 >gi|330465920|ref|YP_004403663.1| response regulator receiver [Verrucosispora maris AB-18-032] gi|328808891|gb|AEB43063.1| response regulator receiver [Verrucosispora maris AB-18-032] Length = 229 Score = 149 bits (375), Expect = 4e-34, Method: Composition-based stats. Identities = 45/223 (20%), Positives = 87/223 (39%), Gaps = 9/223 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + + +G E R D+ ++ L G ++ Sbjct: 6 LVVDDDPALAEMLGIVLRSEGFMPSFVADGERALAAFRDNRPDIVLLDLML--PGMSGID 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IRA S VP++ ++ + +SG DD V KP +E++AR+ A RR + + Sbjct: 64 VARAIRAESGVPIVMLTAKSDTVDVVLGLESGADDYVVKPFKPKELVARMRARLRRGEDA 123 Query: 123 NNR-----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 I + GE L E +L L + + + + Sbjct: 124 APELLTIGPPGNQIAIDVPAHTVSRNGEEVKLTPLEFDLLVALARKPRQVFTREVLLEQV 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219 +G + A + +V H+ +LR K+ + + + R +GY Sbjct: 184 WG-YRHAADTRLVNVHVQRLRAKIEPDPERPEIILTVRGVGYK 225 >gi|315651221|ref|ZP_07904251.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986] gi|315486517|gb|EFU76869.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986] Length = 229 Score = 149 bits (375), Expect = 4e-34, Method: Composition-based stats. Identities = 47/226 (20%), Positives = 92/226 (40%), Gaps = 11/226 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++I+D + + G ++ + S D+ ++ L G E Sbjct: 5 LIIEDEVSIAELERDYLEISGFEVDISTDGKEGLEKALSEDYDLVLLDLML--PGLDGYE 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121 + R IRA ++P++ +S + + G DD + KP E++ARV A R Sbjct: 63 ICRRIRATKEIPIVMVSAKKNDIDKIRGLGLGADDYMTKPFSPSELVARVKAHINRYDRL 122 Query: 122 ------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + E +++ S R G+ L +E IL +L + K AK +F Sbjct: 123 AGVSAANRDIIEVRELKIDSSSRRVWSYGKERTLTAKEFDILRFLAEHPNKVYAKEDLFK 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++GL + + + V HI +R+K+ + +++ +GY Sbjct: 183 EVWGL-ESMGDISTVTVHIKNIREKIELDSSKPQFIETIWGVGYRF 227 >gi|288905747|ref|YP_003430969.1| essential two-component response regulator [Streptococcus gallolyticus UCN34] gi|306831845|ref|ZP_07465001.1| response regulator [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325978780|ref|YP_004288496.1| two-component response regulator [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288732473|emb|CBI14045.1| conserved essential two-component response regulator [Streptococcus gallolyticus UCN34] gi|304426043|gb|EFM29159.1| response regulator [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325178708|emb|CBZ48752.1| two-component response regulator [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 236 Score = 149 bits (375), Expect = 4e-34, Method: Composition-based stats. Identities = 51/232 (21%), Positives = 98/232 (42%), Gaps = 16/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G D+ ++ L L Sbjct: 4 ILIVDDEKPISDIIKFNLTKEGYETVTAFDGREAITKFEEEDPDLIILDLML--PELDGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + +R S +P+I +S S + + G DD V KP +RE+LARV A RR + Sbjct: 62 EVAKEVRKTSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTEN 121 Query: 122 ------------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 SN+ G +++ D + +GE L RE +L +L + G+ + Sbjct: 122 IETAVAEENASASNSEITIGDLKILPDAFVAQKRGEDIELTHREFELLHHLATHMGQVMT 181 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + + ++G +D + V+ I +LR+K+ + + + ++R +GY + Sbjct: 182 REYLLETVWG-YDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYM 232 >gi|129159|sp|P28835|YCF27_PORAE RecName: Full=Probable transcriptional regulator ycf27; AltName: Full=OmpR-like protein gi|14153|emb|CAA44464.1| regulatory protein [Porphyridium aerugineum] Length = 240 Score = 149 bits (375), Expect = 4e-34, Method: Composition-based stats. Identities = 43/229 (18%), Positives = 89/229 (38%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD A ++ G + E + ++ ++ Sbjct: 6 ILVIDDEASIRRILETRLSIIGYDVISAADGEEALSIFKREHPNLVVLDLM--MPKLDGY 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI------ 115 + + +R S VP+I ++ + + + G DD + KP +E+ AR+ ++ Sbjct: 64 GVCQELRKESDVPIIMLTALSDVSDRITGLELGADDYIVKPFSPKELEARIRSVLRRVDK 123 Query: 116 --YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 ++ G +++ + E L E +LE L++ G+ ++ I Sbjct: 124 ASSNNNLPNSGIINIGFLKIDVNKHQVYKNNERVRLTGMEFSLLELLISKAGQPFSRATI 183 Query: 174 FSAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 ++G + V+ VV+ HIS+LR KL + D + + R GY Sbjct: 184 LQEVWGYTAERQVDTRVVDVHISRLRAKLEDDPSNPDLILTARGTGYLF 232 >gi|255526422|ref|ZP_05393334.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296186394|ref|ZP_06854797.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] gi|255509866|gb|EET86194.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296048841|gb|EFG88272.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] Length = 223 Score = 149 bits (375), Expect = 4e-34, Method: Composition-based stats. Identities = 48/227 (21%), Positives = 95/227 (41%), Gaps = 12/227 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D +++ A D ++ N + D+ ++ L Sbjct: 4 ILVVEDEIDIQNIIKAFLEDACYEVDTSNDGIEGFEKFKLSTYDLIILDIML--PKISGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116 + +IR S VP+I ++ Q + FD DD ++KP + +L R Sbjct: 62 AVCEMIRKESHVPIIILTALDDDQNQIKGFDLMADDYISKPFSPQILLKRVEAVLRRFNE 121 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + N I++ + V + L +E +L L+ N+G + + I + Sbjct: 122 SFANLDNTVVAYKDIKLDKNAAKAFVASKELELTAKEFELLNMLIENKGIVLTREVILNK 181 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 ++G +D +E VV++HI LR+KL G D + + R +GY ++ N Sbjct: 182 LWG-YDFYGDERVVDTHIKNLRRKL----GVDYIQTIRKVGYKLEGN 223 >gi|226311053|ref|YP_002770947.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226094001|dbj|BAH42443.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 240 Score = 149 bits (375), Expect = 4e-34, Method: Composition-based stats. Identities = 46/229 (20%), Positives = 94/229 (41%), Gaps = 11/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD A +++ + G + + + S+ + D+ + + Sbjct: 14 ILIIDDEAQIRELLSIYLKNYGFATYEAGNGVDALAVFSNVQIDLVIADIMMPM--MDGY 71 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-------REILARVAA 114 EL + IR S+VP + +S + G DD V KP + + + R+ Sbjct: 72 ELLKKIRHISEVPFLFLSAKSDDMDKIIGLQLGADDYVGKPFNPIEVVSRVQALFRRMDV 131 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + K ++ + G + + G+ + E +IL LM + G+ K I+ Sbjct: 132 FSKGEKQNHEIIQIGDVMLDLVSCKLYKNGQQKEVTSYEFKILSLLMKHAGRVFTKASIY 191 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 ++G + +EN++ +ISKLR+K+ + + + R LGY + Sbjct: 192 EHVWGQ-EYIGDENLIMVYISKLREKIEDNPRKPVYLITIRGLGYRFEK 239 >gi|163839245|ref|YP_001623650.1| two-component response regulator [Renibacterium salmoninarum ATCC 33209] gi|162952721|gb|ABY22236.1| two-component response regulator [Renibacterium salmoninarum ATCC 33209] Length = 239 Score = 149 bits (375), Expect = 4e-34, Method: Composition-based stats. Identities = 43/224 (19%), Positives = 91/224 (40%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ G + + D++ ++ L Sbjct: 13 LLVVDDEPNIRELLSTSLRFAGFDVVAAGNGREALTAAEEHNPDLAVLDVML--PDMDGF 70 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117 + R +R A P++ ++ + + G DD V KP E++AR+ + Sbjct: 71 TVTRRLRAAGRHFPVLFLTARDDTKDKVTGLTVGGDDYVTKPFSLDEVVARIRAVLRRTQ 130 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + + + D + G L E ++L YLM N + ++K QI + Sbjct: 131 PMDDDDAVIRVDDLELDDDAHEVRRSGTSIELSPTEFKLLRYLMLNPNRVLSKAQILDHV 190 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + +D + ++VES+IS LR+K+ + + +KR +GY + Sbjct: 191 W-EYDFNGDASIVESYISYLRRKVDTDPDAPALIQTKRGVGYVL 233 >gi|153954968|ref|YP_001395733.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|219855413|ref|YP_002472535.1| hypothetical protein CKR_2070 [Clostridium kluyveri NBRC 12016] gi|146347826|gb|EDK34362.1| Predicted transcriptional regulator [Clostridium kluyveri DSM 555] gi|219569137|dbj|BAH07121.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 227 Score = 149 bits (375), Expect = 4e-34, Method: Composition-based stats. Identities = 46/224 (20%), Positives = 94/224 (41%), Gaps = 9/224 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD ++ A +G+ + + E D+ ++ + Sbjct: 6 LMVDDEERMRLLIEAYLKREGLKVLLAENGEEALRKFKENHVDLVVLDIMMPL--MDGWT 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYRR 118 + R +R S VP+I ++ + L F G D V KP+ + +I A + Y Sbjct: 64 VCRELRKISNVPIIMLTARGEDEDQLLGFQLGTDSYVTKPVSPKILVAKIKALLRRTYYD 123 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + +G + ++ GE L +E L YL+ N+ +++ +I AI+ Sbjct: 124 EINQVKDNTYDGLFINEEGHEVKIDGENIYLSPKEFEFLCYLIKNKDIVLSREKILDAIW 183 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 G+ D + V++H+ +LR+KL K + + R +GY + Sbjct: 184 GI-DYYGDLRTVDTHVKRLREKLGVKSY--LITTVRGVGYKFEV 224 >gi|56963624|ref|YP_175355.1| two-component response regulator [Bacillus clausii KSM-K16] gi|56909867|dbj|BAD64394.1| two-component response regulator [Bacillus clausii KSM-K16] Length = 228 Score = 149 bits (375), Expect = 4e-34, Method: Composition-based stats. Identities = 43/224 (19%), Positives = 83/224 (37%), Gaps = 9/224 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D + + + E + I+ L Sbjct: 3 ILLIEDDRSIATIVKEYLERESFKVVWQADGESGYHAFCEGAYQLVLIDLML--PKMDGF 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH----REILARVAAIYR 117 L IRA S+VP+I +S + + F G DD V KP + A++ R Sbjct: 61 ALCEKIRASSEVPIIVVSAKQTDFDKVQSFGLGADDYVTKPFSPLELTARVKAQIRRYER 120 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 +R + + + GR +GE L +E +L +L + G+ K ++++A+ Sbjct: 121 SYPQQEDRLQFIDVEIDIKGRRVFARGEQISLTAKEFELLLFLANHPGRVFTKEELYAAV 180 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 + + V H+ +R KL++ +++ +GY Sbjct: 181 WNGDGF--DSRTVTVHVKNVRHKLKDGTKHPKYIETVWGVGYKF 222 >gi|238063010|ref|ZP_04607719.1| two-component system response regulator receiver [Micromonospora sp. ATCC 39149] gi|237884821|gb|EEP73649.1| two-component system response regulator receiver [Micromonospora sp. ATCC 39149] Length = 229 Score = 149 bits (375), Expect = 4e-34, Method: Composition-based stats. Identities = 44/223 (19%), Positives = 85/223 (38%), Gaps = 9/223 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + + +G E R D+ ++ L G ++ Sbjct: 6 LVVDDDPALAEMLGIVLRSEGFLPSFVADGERALAAFRENRPDIVLLDLML--PGMSGID 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR S VP++ ++ + +SG DD V KP +E++AR+ A RR + Sbjct: 64 VARAIRGESGVPIVMLTAKSDTVDVVLGLESGADDYVVKPFKPKELVARMRARLRRGEDV 123 Query: 123 NNR-----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 I + GE L E +L L + + + + Sbjct: 124 APELLTVGPPGNQISIDVPAHTVSRNGEEVKLTPLEFDLLVALARKPRQVFTREVLLEQV 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219 +G + A + +V H+ +LR K+ + + + R +GY Sbjct: 184 WG-YRHAADTRLVNVHVQRLRAKIEPDPERPEIILTVRGVGYK 225 >gi|221633806|ref|YP_002523032.1| phosphate regulatory protein [Thermomicrobium roseum DSM 5159] gi|221156904|gb|ACM06031.1| phosphate regulatory protein [Thermomicrobium roseum DSM 5159] Length = 253 Score = 149 bits (375), Expect = 4e-34, Method: Composition-based stats. Identities = 47/222 (21%), Positives = 88/222 (39%), Gaps = 7/222 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + G S+ L + R D+ ++ L G Sbjct: 21 ILIVEDDPTLAQILSYSLEQRGYSVWTAQEGRHAIMLARTIRPDLIILDLML--PGIDGR 78 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119 ++ R+IR S P++ ++ S + F G DD V KP RE+ AR+ A Sbjct: 79 DVCRLIRKWSSAPILVLTARDSEDDIVALFQEGADDYVVKPFRTRELFARIDALLRRSAE 138 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + N G + +F D +G L RE +L L+ G+ + ++ ++G Sbjct: 139 TTAGNVLTAGTLVIFRDEHRVVYRGREVHLAPREFALLTALVERAGRVCTRQELLDLVWG 198 Query: 180 LFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220 V+ V+ HI ++R+ L G + + + +GY Sbjct: 199 QD--VVDLRNVDVHIHRIREALGGEPDGSNLIRTVHGIGYRF 238 >gi|229101075|ref|ZP_04231844.1| Two-component response regulator [Bacillus cereus Rock3-28] gi|228682343|gb|EEL36451.1| Two-component response regulator [Bacillus cereus Rock3-28] Length = 233 Score = 149 bits (375), Expect = 4e-34, Method: Composition-based stats. Identities = 46/230 (20%), Positives = 89/230 (38%), Gaps = 11/230 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ ++G + E L + ++ + Sbjct: 6 ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIM--MPKVDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + +R ++P+I +S + +G DD V KP + E++AR+ + RR Sbjct: 64 HMCMKVRESKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMK 123 Query: 122 SNNRAETG-------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N A +++ V GE L RE ILE L+ N G + QI+ Sbjct: 124 MNGFAIQNEDELEIGEMKINISTHTVIVDGEEVKLTPREFSILELLVRNPGMVFSAEQIY 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDWN 223 ++ +N V HI K+R+K+ + + +GY I+ + Sbjct: 184 EKVWNERSFQ-SDNTVMVHIRKVREKIEENPRKPIYIKTVWGVGYKIEKD 232 >gi|300172610|ref|YP_003771775.1| two-component response regulator [Leuconostoc gasicomitatum LMG 18811] gi|299886988|emb|CBL90956.1| Two-component response regulator yycF [Leuconostoc gasicomitatum LMG 18811] Length = 235 Score = 149 bits (375), Expect = 4e-34, Method: Composition-based stats. Identities = 44/230 (19%), Positives = 94/230 (40%), Gaps = 14/230 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + + + + + D+ ++ L + Sbjct: 4 ILVVDDEKPISDIIKFNLTKEGYEVVTAADGQEALTVFNEEKPDLVLLDQML--PEIDGV 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR+ S+ P+I ++ S + + G DD V KP +RE++ARV A R K Sbjct: 62 EVLRQIRSKSETPVIMVTAKDSEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRSRKA 121 Query: 122 SNNRAETGPIRVF----------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + + G+ L RE +L YL + + + + Sbjct: 122 VAQHIDESVVNTDDIELGDLTIHPQAYMVSKAGQDIELTHREFELLYYLAQHISQVMTRE 181 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + ++G +D + V+ + +LR+K+ + + + ++R +GY + Sbjct: 182 HLLQQVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPNWLATRRGVGYYL 230 >gi|197295429|ref|YP_002153970.1| two-component regulatory system, response regulator protein [Burkholderia cenocepacia J2315] gi|195944908|emb|CAR57517.1| two-component regulatory system, response regulator protein [Burkholderia cenocepacia J2315] Length = 225 Score = 149 bits (375), Expect = 4e-34, Method: Composition-based stats. Identities = 44/221 (19%), Positives = 89/221 (40%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + G S++ L R DV ++ L Sbjct: 3 ILIVEDEPKTGAYLKKGLEESGFSVDLAKDGGEGLMLAQEERYDVIVLDVML--PVLDGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120 + + +R P++ ++ +Q + + G DD + KP E+LAR+ R Sbjct: 61 GVLKRLRDTHTTPVLFLTARDDVQDRVHGLELGADDYLVKPFAFVELLARIRTLARRGPP 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 G + + R + L RE +L+ L +G+ +++TQI S ++ + Sbjct: 121 RETEHLAVGDLDIDVVRRRVKRGATRIDLTPREFSLLQLLARRQGEVLSRTQIASYVWDM 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + NVVE I +LR K+ + + + R +GY ++ Sbjct: 181 -NFDSDTNVVEVAIRRLRAKIDDAFPVKLIHTVRGVGYVLE 220 >gi|329935641|ref|ZP_08285448.1| transcriptional regulatory protein [Streptomyces griseoaurantiacus M045] gi|329304902|gb|EGG48773.1| transcriptional regulatory protein [Streptomyces griseoaurantiacus M045] Length = 228 Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 49/222 (22%), Positives = 95/222 (42%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D ++ G + + E L R D+ ++ L G Sbjct: 7 LLLIEDDDAIRTALELSLTRQGHRVATAATGEDGLKLLREQRPDLIVLDVML--PGIDGF 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120 E+ R +R Q+P+I ++ + +SG DD V KP+ R + AR+ A+ R + Sbjct: 65 EVCRRVRRTDQLPIILLTARNDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGER 124 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 S++ A G + + GE L E R+L L G+ +++ Q+ ++ Sbjct: 125 ESSDSATFGSVVIDRSAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVW-E 183 Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 D + +V++ + +LR K+ + + + R +GY +D Sbjct: 184 HDYLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRLD 225 >gi|269103311|ref|ZP_06156008.1| phosphate regulon transcriptional regulatory protein PhoB [Photobacterium damselae subsp. damselae CIP 102761] gi|268163209|gb|EEZ41705.1| phosphate regulon transcriptional regulatory protein PhoB [Photobacterium damselae subsp. damselae CIP 102761] Length = 229 Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 38/222 (17%), Positives = 91/222 (40%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++++D A +++ + G + ++ ++ L G G + Sbjct: 5 ILVVEDEAPIREMLCFVLEQKGYQPIEAEDYDSALEKICEPYPELILMDWMLPGGSGINL 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ + Q+P++ ++ + + + G DD + KP +E++AR+ A+ RR+ Sbjct: 65 IKHLKRDELTRQIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELMARLKAVMRRVS 124 Query: 121 VSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + ++ E + E ++L + M ++ + ++ Q+ + I+ Sbjct: 125 PTALDDTIDVQGLKLDPVSHRVTSNDEPLDMGPTEFKMLHFFMTHQERVYSREQLLNNIW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G + VE+ V+ HI +LRK L + + R GY Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALEASGHEKLIQTVRGAGYRF 225 >gi|256751773|ref|ZP_05492646.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus CCSD1] gi|326391351|ref|ZP_08212890.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus JW 200] gi|256749301|gb|EEU62332.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus CCSD1] gi|325992614|gb|EGD51067.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus JW 200] Length = 224 Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 53/222 (23%), Positives = 104/222 (46%), Gaps = 7/222 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++I+D ++D ++G + + + ++ + D+S I ++ Sbjct: 5 LVIEDEEGMRDILKTYLENNGYEVLVAENGKIGLEYFNNNK-DISIILLDIMLPDISGWS 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRRL 119 L + IR S+VP++ I+ L F+ G DD V KP +E++ARV + Sbjct: 64 LLKTIREKSKVPVMMITARGEEYDKLLGFELGADDYVVKPFSPKEVIARVKAILSRTYGA 123 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + E I + R+ V GE L +E +L+ L+ N+GK V++ + + ++G Sbjct: 124 SEEDGKTEYEGISINVSSREVTVDGEKIDLTPKEFDLLKLLIDNKGKVVSREKCLNEVWG 183 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +D + V++HI +LR+KL K + + +GY +D Sbjct: 184 -YDFYGDLRTVDTHIKQLREKLGEK--RKLIKTVWGIGYKLD 222 >gi|323340909|ref|ZP_08081158.1| DNA-binding response regulator [Lactobacillus ruminis ATCC 25644] gi|323091571|gb|EFZ34194.1| DNA-binding response regulator [Lactobacillus ruminis ATCC 25644] Length = 235 Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 46/229 (20%), Positives = 89/229 (38%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + E D+ ++ L L Sbjct: 4 ILVVDDEKPISDIIKFNLTKEGYDVHTAYDGEEALKQVEEVSPDLIILDLML--PKIDGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R +P+I ++ + + + G DD V KP +RE++ARV A RR Sbjct: 62 EVAREVRKTHDMPIIMVTAKDAEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRQAA 121 Query: 122 SNNRAETGPIRVF---------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 N + GE L RE +L YL + G+ + + Sbjct: 122 VANATPEEEKSSDIEIGSLTIHPEAYVVSKNGEKIELTHREFELLYYLAKHIGQVMTREH 181 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 + ++G +D + V+ + +LR+K+ + + ++R +GY + Sbjct: 182 LLQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSRPTWLVTRRGVGYYL 229 >gi|210608616|ref|ZP_03287933.1| hypothetical protein CLONEX_00112 [Clostridium nexile DSM 1787] gi|210152971|gb|EEA83977.1| hypothetical protein CLONEX_00112 [Clostridium nexile DSM 1787] Length = 232 Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 40/229 (17%), Positives = 83/229 (36%), Gaps = 11/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D + ++ + + D++ ++ L Sbjct: 5 ILVVDDEEAIADLVEVYLKSENYNVLKCYNGKDALKCVEKEDIDLAILDVML--PDIDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH--------REILARVA 113 ++ + IR + P+I ++ + G DD + KP ++ Sbjct: 63 DICQKIRENHHFPVIMLTARDENIDKITGLTIGADDYITKPFQMLELVARVKAQLRRVTK 122 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + +K++ N G + V + + + E L E IL L NRGK V ++ Sbjct: 123 YNQQDVKMNENVIIIGGLVVDKENHECTINDEPLSLTPTEFSILWVLCKNRGKVVDSEKL 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 F ++G N + HI LR K+ + + + +GY I+ Sbjct: 183 FEEVWGEKYFVNSTNTIMVHIRHLRDKMNDSAENPKYIKTVWGVGYKIE 231 >gi|254421333|ref|ZP_05035051.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] gi|196188822|gb|EDX83786.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] Length = 257 Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 49/237 (20%), Positives = 97/237 (40%), Gaps = 20/237 (8%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA------------REDVSAIE 50 +L++D L+++ D+G + ++ + + D+S I Sbjct: 21 LLVEDEELIRETVALSLADEGFEVCVADNGQRALEMILGGIERSGAEKPQPVAPDISLII 80 Query: 51 AFLIGKGEKVLELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL 109 L+ G L+L R++ +P++ +S + + + G DD + KP RE++ Sbjct: 81 LDLMLPGMNGLDLCRLVRHQGIDIPILILSAKGTETDRVLGLEVGADDYLTKPFGIRELI 140 Query: 110 ARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLP-----RRERRILEYLMANR 164 AR A+ RR + + E +R + +E +ILE L++ Sbjct: 141 ARCRALLRRCQSQDKPNEKSILRFADIALHTDECRVFLGSTEVSLSPKEFKILELLLSQP 200 Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 + ++ QI ++G +D + V+ HI LR+KL G + + R GY + Sbjct: 201 KRVWSRNQIIDQVWG-YDFMGDNKTVDVHIRWLREKLEENPGQPKYLKTVRGFGYRL 256 >gi|290957941|ref|YP_003489123.1| two component system response regulator [Streptomyces scabiei 87.22] gi|260647467|emb|CBG70572.1| two component system response regulator [Streptomyces scabiei 87.22] Length = 225 Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 51/222 (22%), Positives = 93/222 (41%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D ++ G + + E L R D+ ++ L G Sbjct: 4 LLLIEDDDAIRTALELSLTRQGHRVATAATGEDGLKLLREQRPDLIVLDVML--PGIDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR Q+P+I ++ + +SG DD V KP+ R + AR+ A+ RR + Sbjct: 62 EVCRRIRRTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGER 121 Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 N A T + GE L E R+L L G+ +++ Q+ ++ Sbjct: 122 EANDAATFGSLVIDRAAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVW-E 180 Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 D + +V++ + +LR K+ + + + R +GY +D Sbjct: 181 HDYLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRLD 222 >gi|229163529|ref|ZP_04291479.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus R309803] gi|228619911|gb|EEK76787.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus R309803] gi|324328428|gb|ADY23688.1| two-component response regulator ycbL [Bacillus thuringiensis serovar finitimus YBT-020] Length = 230 Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 42/228 (18%), Positives = 92/228 (40%), Gaps = 10/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D +++ +G + + E D+ ++ L Sbjct: 5 ILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIM--MPKLDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115 E+ RIIR S VP++ +S + G DD + KP E+ R + Sbjct: 63 EVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 Y + + + G + + E G+ L +E IL+ + N+ + K QI++ Sbjct: 123 YSATEETEKMIQIGDLTIDPINFTVEKNGKSLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 ++ + ++NV+ H+ +LR+K+ + + + + +GY ++ Sbjct: 183 LVWNE-EYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLEV 229 >gi|225374627|ref|ZP_03751848.1| hypothetical protein ROSEINA2194_00243 [Roseburia inulinivorans DSM 16841] gi|225213520|gb|EEG95874.1| hypothetical protein ROSEINA2194_00243 [Roseburia inulinivorans DSM 16841] Length = 227 Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 48/227 (21%), Positives = 90/227 (39%), Gaps = 10/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD +++ ++ + + L + + + ++ Sbjct: 5 ILIADDEPEIRNLLRLYLENENYHVIEAEDGQRALDLLRAEQPALCILDIM--MPKIDGY 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + IR S +P+I +S + + + G DD + KP + E +ARV + RR Sbjct: 63 HVLQQIRKESNIPVIILSAKDADSEKILGLNLGADDYLAKPFNPLEAVARVNSNIRRFYS 122 Query: 122 SNNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + D + ++ L E RI+E LM + GK K QI+ Sbjct: 123 LGTKVVQEGNLAVRDLVLNQDACTLKKGDKIIQLTSVEYRIMELLMKHPGKVFTKQQIYE 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +G D V +N + ISKLR KL + + + R LGY ++ Sbjct: 183 HGWGE-DYIVADNNIMVCISKLRAKLDDNPSA-YIQTIRGLGYRLEK 227 >gi|111019061|ref|YP_702033.1| response regulator, two-component system [Rhodococcus jostii RHA1] gi|226361154|ref|YP_002778932.1| two-component response regulator RegX3 [Rhodococcus opacus B4] gi|110818591|gb|ABG93875.1| response regulator, two-component system [Rhodococcus jostii RHA1] gi|226239639|dbj|BAH49987.1| two-component response regulator RegX3 [Rhodococcus opacus B4] Length = 229 Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 53/227 (23%), Positives = 101/227 (44%), Gaps = 11/227 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + D L +G A D+ ++ L G + Sbjct: 5 LIVEDEESLADPLAFLLRKEGFETTIVGDGPSALAEFDRAGADIVLLDLML--PGMSGTD 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + +R+ S VP+I ++ S + + G DD V KP RE++AR+ A+ RR S Sbjct: 63 VCKQLRSRSGVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGVDS 122 Query: 123 NNRAETG-------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 P+R+ + +V GE LP +E +LEYL+ N G+ + + Q+ Sbjct: 123 ELDVAQDSAVLEAGPVRMDVERHVVQVNGEAVTLPLKEFDLLEYLLRNSGRVLTRGQLID 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 ++G D + ++ H+ +LR K+ + + + + R LGY ++ Sbjct: 183 RVWGA-DYVGDTKTLDVHVKRLRSKIETDPAKPEHLVTVRGLGYKLE 228 >gi|308176349|ref|YP_003915755.1| two-component system response regulator [Arthrobacter arilaitensis Re117] gi|307743812|emb|CBT74784.1| two-component system response regulator [Arthrobacter arilaitensis Re117] Length = 235 Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 48/221 (21%), Positives = 94/221 (42%), Gaps = 7/221 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ G + + + D++ ++ L Sbjct: 10 LLVVDDEPNIRELLSTSLRFAGFEVVAAANGREALAAVEADEPDLAVLDVML--PDMDGF 67 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R +R A P++ ++ + G DD V KP E++AR+ A+ RR Sbjct: 68 TITRKLRAAGRHFPVLFLTARDDTSDKVTGLTVGGDDYVTKPFSLDEVVARIRAVLRRTA 127 Query: 121 VSNNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + T + D + GE+ L E ++L YLM N + ++K+QI + Sbjct: 128 SGEDENATISVADLELDDDAHEVRRAGEIIDLSPTEFKLLRYLMMNPNRVLSKSQILDHV 187 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + +D + ++VES+IS LR+K+ + +KR +GY Sbjct: 188 W-EYDFNGDASIVESYISYLRRKVDRPEWPALIQTKRGVGY 227 >gi|145294917|ref|YP_001137738.1| hypothetical protein cgR_0863 [Corynebacterium glutamicum R] gi|140844837|dbj|BAF53836.1| hypothetical protein [Corynebacterium glutamicum R] Length = 226 Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 43/220 (19%), Positives = 86/220 (39%), Gaps = 5/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + +G S + D+ ++ L G + Sbjct: 5 ILVVDDDPAISEMLTIVLSAEGFDTVAVTDGALAVETASREQPDLILLDLML--PGMNGI 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R+IR S VP+I ++ + +SG DD VNKP +E++AR+ A R Sbjct: 63 DICRLIRQESSVPIIMLTAKTDTVDVVLGLESGADDYVNKPFKAKELVARIRARLRATVD 122 Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + + G L E +L L + + ++ ++G Sbjct: 123 EPSEILEVGDLSIDVPAHTVKRNGAEISLTPLEFDLLLELARKPQQVFTREELLGKVWG- 181 Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219 + A + +V H+ +LR K+ + V + R +GY Sbjct: 182 YRHASDTRLVNVHVQRLRAKIEKDPENPQIVLTVRGVGYK 221 >gi|115360729|ref|YP_777866.1| two component heavy metal response transcriptional regulator [Burkholderia ambifaria AMMD] gi|115286057|gb|ABI91532.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia ambifaria AMMD] Length = 225 Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 44/221 (19%), Positives = 89/221 (40%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + G S++ L DV ++ L Sbjct: 3 ILIVEDEPKTAAYLKKGLEESGFSIDLAKDGAEGLMLAQEENYDVIVLDVML--PVLDGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120 + + +R P++ ++ +Q + + G DD + KP E+LAR+ R Sbjct: 61 GVLKRLRDTHTTPVLFLTARDDVQDRVHGLELGADDYLVKPFAFVELLARIRTLARRGPP 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 R G + + R + L RE +L+ L +G+ +++TQI S ++ + Sbjct: 121 RETERIVIGDLEIDVVRRRVKRGTVRIDLTPREFSLLQLLARRQGEVLSRTQIASYVWDM 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + NVVE I +LR K+ + + + R +GY ++ Sbjct: 181 -NFDSDTNVVEVAIRRLRAKIDDAFSVKLIHTVRGVGYVLE 220 >gi|228939020|ref|ZP_04101619.1| Two-component response regulator vanR [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228971901|ref|ZP_04132522.1| Two-component response regulator vanR [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978508|ref|ZP_04138885.1| Two-component response regulator vanR [Bacillus thuringiensis Bt407] gi|228781525|gb|EEM29726.1| Two-component response regulator vanR [Bacillus thuringiensis Bt407] gi|228787991|gb|EEM35949.1| Two-component response regulator vanR [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228820639|gb|EEM66665.1| Two-component response regulator vanR [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 243 Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 40/229 (17%), Positives = 83/229 (36%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +G + ++ E + ++ ++ ++ + Sbjct: 17 ILIVDDDKDIIQFINVNLKQEGFKVFSAHNGEEALEIINNNSIQLAILDIM--MPQMDGI 74 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARVA 113 EL R IR +P++ +S S + F +G DD + KP E Sbjct: 75 ELCRRIREKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 134 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 +V + + + R + GE L + E IL + A R + +I Sbjct: 135 FNQNAPQVMEKKINIRGLEIDEVSRTVMLYGETMNLTKTEYDILHLMAAARNRVFTIEEI 194 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + +++ N V HI++LR K+ + + +GY I+ Sbjct: 195 YESVWNERAYE-SNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIE 242 >gi|254385162|ref|ZP_05000494.1| transcriptional regulatory protein afsQ1 [Streptomyces sp. Mg1] gi|194344039|gb|EDX25005.1| transcriptional regulatory protein afsQ1 [Streptomyces sp. Mg1] Length = 225 Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 49/222 (22%), Positives = 94/222 (42%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D ++ G + + E L R D+ ++ L G Sbjct: 4 LLLIEDDDAIRTALELSLSRQGHRVATAATGEDGLKLLREQRPDLIVLDVML--PGIDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120 E+ R IR Q+P+I ++ + +SG DD V KP+ R + AR+ A+ R + Sbjct: 62 EVCRRIRRTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGER 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 +++ A G + + GE L E R+L L G+ +++ Q+ ++ Sbjct: 122 EASDSATFGSLVIDRSAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVW-E 180 Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 D + +V++ + +LR K+ + + R +GY +D Sbjct: 181 HDYLGDSRLVDACVQRLRAKVEEIPSSPTLIRTVRGVGYRLD 222 >gi|318056507|ref|ZP_07975230.1| putative two-component system response regulator [Streptomyces sp. SA3_actG] gi|318075902|ref|ZP_07983234.1| putative two-component system response regulator [Streptomyces sp. SA3_actF] gi|333026723|ref|ZP_08454787.1| putative phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. Tu6071] gi|332746575|gb|EGJ77016.1| putative phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. Tu6071] Length = 225 Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 46/222 (20%), Positives = 91/222 (40%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D ++ G + + E R D+ ++ L G Sbjct: 4 LLLIEDDDAIRTALELSLSRQGHRVATAATGEDGLTKLREERPDLIVLDVML--PGIDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR Q+P+I ++ + +SG DD V KP+ R + AR+ A+ RR + Sbjct: 62 EVCRRIRRTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGER 121 Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 ++ + + G L E R+L L G+ +++ Q+ ++ Sbjct: 122 ESSDSAVFGNLVIDRSAMTVSKDGTELQLTPTELRLLLELSRRPGQALSRQQLLRLVW-E 180 Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 D + +V++ + +LR K+ + + + R +GY +D Sbjct: 181 HDYLGDSRLVDACVQRLRAKVEDVPSSPKLIRTVRGVGYRLD 222 >gi|312144339|ref|YP_003995785.1| two component transcriptional regulator, winged helix family [Halanaerobium sp. 'sapolanicus'] gi|311904990|gb|ADQ15431.1| two component transcriptional regulator, winged helix family [Halanaerobium sp. 'sapolanicus'] Length = 235 Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 44/228 (19%), Positives = 100/228 (43%), Gaps = 15/228 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++++D +++ G + ++ + S+ D+ ++ L G +V Sbjct: 4 ILIVEDEKNIRELVKFNLEGAGFKVLTASNGKEALEKISTN-IDLVVLDLMLPEIDGMEV 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 R ++ +I ++ + + G DD + KP RE++AR+ AI+RR++ Sbjct: 63 CRRLRADEKLKKIAIIMLTAKGEELERILGLEMGADDYMTKPFSPRELIARIKAIFRRME 122 Query: 121 --------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + G ++ + + + E L +E +L YL+ N+G+ +++ Sbjct: 123 ELKLDKDTIKDEIIIAGDFKIDISRHEVKFKDENISLTLKEFELLRYLILNQGRVLSRNL 182 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + I+G ++ A + V+ HI +LRKK + + + R +GY Sbjct: 183 LLEKIWG-YEYAGDTRTVDVHIRRLRKK----SSSEYIKTVRGVGYKF 225 >gi|253575382|ref|ZP_04852720.1| multi-component transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251845379|gb|EES73389.1| multi-component transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 248 Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 38/226 (16%), Positives = 95/226 (42%), Gaps = 10/226 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD +++ +G ++ + + ++ D+ ++ L + Sbjct: 17 LVVDDEWNMRNLLRIYLTREGFEVKEATNGNEALEMAANHHFDIILLDLML--PDMDGWQ 74 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + IR V ++ ++ + + G DD + KP E+LARV ++ RR ++ Sbjct: 75 VCKKIREKDHVAILMLTARSETKDKVYGLGIGADDYLTKPFEPEELLARVYSLIRRSAIT 134 Query: 123 NNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + F GR+ + ++E + L + + ++ ++ + Sbjct: 135 QSIRRQEAALEFPHLRILPEGREVIIHDHSVEFTQKEFDLFISLAKSEQRAFSREELVNL 194 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 I+G + E VV++HI +R+K + G++P+ + +GY + Sbjct: 195 IWG-DEYEGEVRVVDTHIKNIREKTQKAGLGYNPIQTVWGVGYKFN 239 >gi|225572481|ref|ZP_03781345.1| hypothetical protein RUMHYD_00778 [Blautia hydrogenotrophica DSM 10507] gi|225040053|gb|EEG50299.1| hypothetical protein RUMHYD_00778 [Blautia hydrogenotrophica DSM 10507] Length = 295 Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 45/224 (20%), Positives = 90/224 (40%), Gaps = 6/224 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G +G + SL L + D ++ L + Sbjct: 69 ILIVEDDRGLAEGIKFYLEKEGYRVVMAGSLGGGRVLYRQEKPDAVLLDLNL--PDGDGM 126 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA---IYRR 118 R IR +SQVP++ ++ + ++G DD + KP + R+ ++ Sbjct: 127 SFCREIRKNSQVPILMVTARDMETDEVMGLETGADDYLTKPFSLTVLRTRLRKLLERQQK 186 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 V N+ ++G I + E L E R+L + N + + K QI + I+ Sbjct: 187 GGVENHILKSGEIFLDESRTSVRKGAESLNLSMTEYRLLRLFLKNPNQVLLKEQILAVIW 246 Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 V+EN + +I +LRKK+ + + + +GY + Sbjct: 247 DSESNFVDENTLAVNIRRLRKKIESDPSNPMYLKTIHGMGYLWE 290 >gi|217965616|ref|YP_002351294.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Listeria monocytogenes HCC23] gi|289433637|ref|YP_003463509.1| two-component response regulator [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|290892561|ref|ZP_06555554.1| DNA-binding two-component system response regulator [Listeria monocytogenes FSL J2-071] gi|315280741|ref|ZP_07869554.1| transcriptional regulatory protein WalR [Listeria marthii FSL S4-120] gi|217334886|gb|ACK40680.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Listeria monocytogenes HCC23] gi|289169881|emb|CBH26421.1| two-component response regulator [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|290557870|gb|EFD91391.1| DNA-binding two-component system response regulator [Listeria monocytogenes FSL J2-071] gi|307569835|emb|CAR83014.1| DNA-binding response regulator [Listeria monocytogenes L99] gi|313611043|gb|EFR85929.1| transcriptional regulatory protein WalR [Listeria monocytogenes FSL F2-208] gi|313615609|gb|EFR88941.1| transcriptional regulatory protein WalR [Listeria marthii FSL S4-120] gi|313634987|gb|EFS01371.1| transcriptional regulatory protein WalR [Listeria seeligeri FSL N1-067] gi|313639665|gb|EFS04456.1| transcriptional regulatory protein WalR [Listeria seeligeri FSL S4-171] Length = 237 Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 44/229 (19%), Positives = 92/229 (40%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + + L + D+ ++ L G + Sbjct: 6 ILVVDDEKPIADIVKFNLNKEGFDVYCAYDGDEALELVEEVQPDLILLDIML--PGRDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112 E+ R +R +P+I ++ S + + G DD V KP +RE Sbjct: 64 EVCREVRKKYDMPIIMVTAKDSEIDKVIGLELGADDYVTKPFSNRELIARVKANLRRHSQ 123 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + N+ E G + + D +GE L RE +L YL + G+ + + Sbjct: 124 VSSSAAEEEENSELEIGSLIIHPDAYVASKRGETIELTHREFELLHYLAKHMGQVMTREH 183 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + ++G +D + V+ + +LR+K+ + + ++R +GY + Sbjct: 184 LLQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPAWLVTRRGVGYYL 231 >gi|326772505|ref|ZP_08231789.1| DNA-binding response regulator RegX3 [Actinomyces viscosus C505] gi|326637137|gb|EGE38039.1| DNA-binding response regulator RegX3 [Actinomyces viscosus C505] Length = 243 Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 47/232 (20%), Positives = 93/232 (40%), Gaps = 15/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-------EDVSAIEAFLI 54 +L++D +D DG + + + ++R D+ ++ L Sbjct: 10 ILLVEDEENFRDPLAYGLRRDGFEVVEAEDGQRAVEIFEASRRPGGVGPIDLVLLDLML- 68 Query: 55 GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILA 110 + IR S VP+I ++ + + + G DD V KP +R + A Sbjct: 69 -PRLDGTGVCTRIRRSSSVPVIMLTAKDTELDKIVGLEIGADDYVTKPYSYRELLARLKA 127 Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + G +R+ + + V GEV +P RE +LE + + G+ + + Sbjct: 128 VLRRSRAAAPEPEPVLVAGGVRMDVERHEVRVDGEVVAMPLREFELLELFLRHPGRVLTR 187 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 +QI ++G D + ++ HI +LR ++ + + + R LGY +D Sbjct: 188 SQILERLWG-PDYEGDTKTLDVHIKRLRGRIEVDASKPVLITTVRGLGYRLD 238 >gi|319651063|ref|ZP_08005197.1| DNA-binding response regulator [Bacillus sp. 2_A_57_CT2] gi|317397233|gb|EFV77937.1| DNA-binding response regulator [Bacillus sp. 2_A_57_CT2] Length = 236 Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 46/229 (20%), Positives = 93/229 (40%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + + D+ ++ L + + Sbjct: 5 ILVVDDEKPIADILQFNLKKEGYEVVCAYDGNDALDKVEEIKPDLILLDIMLPQR--DGI 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R +P+I ++ S + + G DD V KP RE++ARV A RR + Sbjct: 63 EVCREVRKKYDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANMRRHQQ 122 Query: 122 SNNRAETGPIRV---------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 ++ E D +GE L RE +L YL + G+ + + Sbjct: 123 IASKTEEEDESNEIEVGSLIIHPDAYVVSKRGETIELTHREFELLHYLAKHIGQVMTREH 182 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + ++G +D + V+ + +LR+K+ + + ++R +GY + Sbjct: 183 LLQTVWG-YDYYGDVRTVDVTVRRLREKIEDNPSHPTWIVTRRGVGYYL 230 >gi|307331969|ref|ZP_07611063.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] gi|306882402|gb|EFN13494.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] Length = 227 Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 49/222 (22%), Positives = 92/222 (41%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D ++ G + + E L R D+ ++ L G Sbjct: 7 LLLIEDDDAIRTALELSLSRQGHRVATAATGEDGLKLLREQRPDLIVLDVML--PGIDGF 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR Q+P+I ++ + +SG DD V KP+ R + AR+ A+ RR + Sbjct: 65 EVCRRIRRTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGER 124 Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 N + + GE L E R+L L G+ +++ Q+ ++ Sbjct: 125 EANDSAAFGSLLIDRAAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVW-E 183 Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 D + +V++ + +LR K+ + + + R +GY +D Sbjct: 184 HDYLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRLD 225 >gi|295402148|ref|ZP_06812107.1| two component transcriptional regulator, winged helix family [Geobacillus thermoglucosidasius C56-YS93] gi|312112732|ref|YP_003991048.1| transcriptional regulator [Geobacillus sp. Y4.1MC1] gi|294975831|gb|EFG51450.1| two component transcriptional regulator, winged helix family [Geobacillus thermoglucosidasius C56-YS93] gi|311217833|gb|ADP76437.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y4.1MC1] Length = 235 Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 49/228 (21%), Positives = 93/228 (40%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + E D+ ++ L K + Sbjct: 5 ILVVDDEKPIADILQFNLQKEGYEVICAYDGEEALQKVEEVMPDLILLDIMLPQK--DGM 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R +P+I ++ S + + G DD V KP RE+LARV A RR Sbjct: 63 EVCREVRKKYDMPIIILTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVRANLRRHSQ 122 Query: 122 SNNRAETGPIR--------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + T + D +GE L RE +L YL + G+ + + + Sbjct: 123 TVAQEGTNDTNEIIIGSLVIRPDAYIVSKRGETIELTHREFELLHYLAKHIGQVMTREHL 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++G +D + V+ + +LR+K+ + + ++R +GY + Sbjct: 183 LQTVWG-YDYYGDVRTVDVTVRRLREKIEDNPSHPSWIVTRRGVGYYL 229 >gi|169828806|ref|YP_001698964.1| sensory transduction protein [Lysinibacillus sphaericus C3-41] gi|168993294|gb|ACA40834.1| Sensory transduction protein [Lysinibacillus sphaericus C3-41] Length = 224 Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 43/224 (19%), Positives = 95/224 (42%), Gaps = 6/224 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD +++ +G + + + S D+ ++ Sbjct: 4 ILVADDDPNIRELVCLFLRKEGFATVEAEDGKEALSIYHSTPVDLVVLDIM--MPTMDGW 61 Query: 62 ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L + + RA++++PL+ ++ + F+ G DD + KP E+ RV A+ +R + Sbjct: 62 TLCKELRRANAEIPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVKALLKRYR 121 Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + + G I + + LP +E +L L G+ + Q+ I+G Sbjct: 122 IGYSQTIQLGAITLDRQTFKIMTGTDAITLPLKEFELLYKLAETPGQVYTREQLIDQIWG 181 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 + D A + ++ HI +LR++ F +++ R LGY ++ + Sbjct: 182 I-DYAGDNRTIDVHIKRLRERFALIADF-HIETIRGLGYRLEVD 223 >gi|303234314|ref|ZP_07320954.1| putative DNA-binding response regulator MtrA [Finegoldia magna BVS033A4] gi|302494567|gb|EFL54333.1| putative DNA-binding response regulator MtrA [Finegoldia magna BVS033A4] Length = 226 Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 41/225 (18%), Positives = 90/225 (40%), Gaps = 8/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + + +E + + + + ++ L G Sbjct: 4 ILIVEDELDLANIIKDYLVKELYEVEICTEGDKAIEIFDKFKPSLVILDLML--PGMNGY 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117 E+ + IR S +P++ +S + + G DD + KP R + A++ Sbjct: 62 EICQNIRIKSTIPILILSAKIDEFDKVKGLNLGADDYITKPFRPRELLARVNAQLRRSQV 121 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 K + + IR+++ E G L R E +L +L N + ++ Q++ I Sbjct: 122 FNKENLEIIDIENIRIYTKEYKVEKNGRDLDLSRNEFELLVFLSKNPKQVFSREQLYERI 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 +G FD + N V I++LR+K+ + + + +GY + Sbjct: 182 WG-FDSYGDLNTVTVTINRLRQKIEDNPKNPKYILTVWGVGYKFE 225 >gi|296140967|ref|YP_003648210.1| two component transcriptional regulator, winged helix family [Tsukamurella paurometabola DSM 20162] gi|296029101|gb|ADG79871.1| two component transcriptional regulator, winged helix family [Tsukamurella paurometabola DSM 20162] Length = 228 Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 45/224 (20%), Positives = 89/224 (39%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V++ +G ++ + +S R D ++ L Sbjct: 3 ILVVDDDRAVRESLRRSLTFNGYQVDTAVDGQDALDHIASNRPDALVLDLN--MPRLDGL 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +R+ P++ ++ + + D+G DD + KP E+LAR+ A+ RR Sbjct: 61 EVCRRLRSAGDDLPILVLTARDGVSDRVSGLDAGADDYLPKPFALEELLARMRALLRRAV 120 Query: 121 VSNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 R+ L R E +LE LM N + + +++I Sbjct: 121 PDTASDNEVLRFEDLTLDPATREVSRGDRSISLTRTEFSLLEMLMGNPRRVLTRSRILEE 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G +D N +E ++ LR+K + + R +GY + Sbjct: 181 VWG-YDFPTSGNALEVYVGYLRRKTEADGEPRLIHTVRGVGYVL 223 >gi|186686341|ref|YP_001869537.1| two component transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186468793|gb|ACC84594.1| two component transcriptional regulator, winged helix family [Nostoc punctiforme PCC 73102] Length = 241 Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 45/229 (19%), Positives = 94/229 (41%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++ G + + E + D+ ++ Sbjct: 8 ILVVDDEASIRRILETRLSMIGYDVVTASDGEEALSTFRVSTPDLIVLDVM--MPKLDGY 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + +R S VP+I ++ ++ + + G DD + KP +E+ AR+A I RR Sbjct: 66 GVCQELRKESDVPIIMLTALGNVADRITGLELGADDYMTKPFSPKELEARIACILRRCFH 125 Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + T ++ ++ R + L E +LE L+ N GK ++ ++ Sbjct: 126 KTSVNTTPNSTIIRVGNLKIDTNKRQVYKNEQRIRLTGVEFSLLELLVNNSGKVFSRLEM 185 Query: 174 FSAIYG-LFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 ++G + ++ VV+ HIS+LR K+ + + + + R GY Sbjct: 186 LQLLWGCVPGLHLDTRVVDVHISRLRTKVEDDPNLPELIITARGSGYFF 234 >gi|325264428|ref|ZP_08131159.1| DNA-binding response regulator [Clostridium sp. D5] gi|324030499|gb|EGB91783.1| DNA-binding response regulator [Clostridium sp. D5] Length = 245 Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 38/240 (15%), Positives = 76/240 (31%), Gaps = 24/240 (10%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ L +G +E + + D+ ++ G Sbjct: 6 IIIVDDNPEIREIIRILLQGEGYDIEEARNGMEALEMLEQGMFDLIILDIM--MPGMNGY 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------------- 108 + IR S P++ +S F SG DD + KP + E+ Sbjct: 64 QTCLEIRKQSNAPILFLSAKGQESDKTLGFSSGGDDYLVKPFSYNELVSRAKALIRRYQI 123 Query: 109 --------LARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYL 160 I R + + + +G L E +L L Sbjct: 124 YKGKENSETVSEQVICTGNTQEKQRLHFHDLEIDEEQEAVYAEGRQIELTDTEYAMLHLL 183 Query: 161 MANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219 + R + + +++ A++ N + HI LRKK+ + + + GY Sbjct: 184 IKYRHQIFSAERLYEAVWDEPYYYGANNTIMVHIRNLRKKIEKDAKNPVLIKTIWGKGYR 243 >gi|295696527|ref|YP_003589765.1| two component transcriptional regulator, winged helix family [Bacillus tusciae DSM 2912] gi|295412129|gb|ADG06621.1| two component transcriptional regulator, winged helix family [Bacillus tusciae DSM 2912] Length = 228 Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 41/224 (18%), Positives = 80/224 (35%), Gaps = 7/224 (3%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 M +L+DD V D +G + + + + D+ ++ L Sbjct: 4 MLLLVDDEPRVLDVMATFLQGEGFRIVTAQTGREALEVFQKHQPDLVVLDWML--PEMSG 61 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYR 117 L++ R +R V +I ++ + + G DD + KP RE + V + Sbjct: 62 LDVCRELRRMGSVGIIMVTARTEEADKIVGLEVGADDYITKPFSLRELAARIRSVLRRTQ 121 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + G + + + L E +IL L + G ++ Q+ + Sbjct: 122 GGGDEPSVLRRGDLTIDETKFRVWKGDQEIVLTPTEFKILVTLASRPGTVYSRLQLLQSA 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 G E V++H+S LRKK+ + + + +GY Sbjct: 182 LGET-YLNYERTVDTHVSHLRKKIEDDPAEPRYIQTVYGVGYRF 224 >gi|290954998|ref|YP_003486180.1| response regulator [Streptomyces scabiei 87.22] gi|260644524|emb|CBG67609.1| putative response regulator [Streptomyces scabiei 87.22] Length = 239 Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 42/222 (18%), Positives = 84/222 (37%), Gaps = 7/222 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD V + G +++ ++ R D+ ++ L G LE Sbjct: 2 LVVDDDPTVAEVVTGYLDRAGYTVDRAGDGPAALARAAAHRPDLVVLDLML--PGMDGLE 59 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--ILARVAAIYRRLK 120 + R +RA VP+I ++ + + G DD V KP RE + R Sbjct: 60 VCRRLRARGPVPVIMLTARGDEDDRILGLEVGADDYVTKPFSPRELVLRVESVLRRARPA 119 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + +R+ R G L RE +L + + N G+ ++ + ++G Sbjct: 120 SDARQLTAAGLRLDPAARHATRDGAELALTLREFDLLAFFLRNPGRAHSREDLMREVWGW 179 Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 + + V H+ +LR K+ + + + +GY + Sbjct: 180 D--FGDLSTVTVHVRRLRGKIEHDPAQPRLIRTVWGVGYRFE 219 >gi|255022542|ref|ZP_05294528.1| two-component response regulator [Listeria monocytogenes FSL J1-208] Length = 225 Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 41/223 (18%), Positives = 88/223 (39%), Gaps = 5/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +G + + E + + ++ I+ Sbjct: 4 ILVVDDDRHILKLVGHYLRAEGFRVLEASDGVEAEKIVELEQVHLAVIDVM--MPNMDGF 61 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119 EL + +RA +P+I ++ +L F+ G DD V KP E++ R+ A + R Sbjct: 62 ELCQKMRASFPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELVFRIRALLRRSN 121 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + S + G I + ++ + +P +E +L L + G+ + ++ I+ Sbjct: 122 QASEVKINIGNITIDQKSYGIKIGNQERMIPVKEFELLYQLASYPGRIFTREELIERIW- 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 D + V+ HI +LR + + R +GY ++ Sbjct: 181 QRDYDGSDRTVDVHIKRLRDHFDEDKDGIRIVTVRGVGYKLEE 223 >gi|126699228|ref|YP_001088125.1| two-component response regulator [Clostridium difficile 630] gi|255100752|ref|ZP_05329729.1| two-component response regulator [Clostridium difficile QCD-63q42] gi|255306636|ref|ZP_05350807.1| two-component response regulator [Clostridium difficile ATCC 43255] gi|115250665|emb|CAJ68489.1| Two-component response regulator [Clostridium difficile] Length = 233 Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 51/232 (21%), Positives = 92/232 (39%), Gaps = 14/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D ++G ++ F + + S D++ ++ L Sbjct: 5 ILIVDDEKEIADLIEVYLKNEGFTVYKFYTGKEALECIESKNLDMAILDIML--PDIDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + IR P+I ++ + G DD + KP + E++ARV RR Sbjct: 63 HICQKIREKYYYPIIMLTAKIEDIDKIMGLTIGADDYITKPFNPLEVVARVKTQLRRYMR 122 Query: 122 SNNRAETGPIRVFSD----------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 NN E I V + G+ L E IL YL ++GK V Sbjct: 123 YNNSYEQQSIIVNEYDIKGLIINKETHKCSLFGKEVALTPIEFSILWYLCEHQGKVVPSE 182 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 ++F A++G N V +HI +LR+K+ + + +GY+I+ Sbjct: 183 ELFEAVWGEKYLD-NNNTVMAHIGRLREKIHEPSKNPKFIKTVWGVGYTIEK 233 >gi|317125629|ref|YP_004099741.1| transcriptional regulator [Intrasporangium calvum DSM 43043] gi|315589717|gb|ADU49014.1| two component transcriptional regulator, winged helix family [Intrasporangium calvum DSM 43043] Length = 225 Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 47/219 (21%), Positives = 94/219 (42%), Gaps = 5/219 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + + ++G+ + AR D+ ++ L G +E Sbjct: 6 LVVDDDLALAEMLGIVLRNEGLEVSHVADGTDAVAAFREARPDLVLLDVML--PGLDGME 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLKV 121 + R IRA S VP++ ++ + +SG DD V KP +E++ARV A R + Sbjct: 64 VCRRIRAESGVPIVMLTARTDTVDVVVGLESGADDYVVKPFKPQELIARVRARLRRGDEP 123 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + G + + G + G+ L E +L L + + + ++G + Sbjct: 124 APEKLSIGDLDIDVAGHSVKRDGQPLSLTPLEFDLLVALARKPWQVFTREVLLEQVWG-Y 182 Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219 A + +V H+ +LR K+ + + V + R +GY Sbjct: 183 RHAGDTRLVNVHVQRLRSKIEHDPEHPEIVVTVRGVGYK 221 >gi|259503210|ref|ZP_05746112.1| phosphate regulon transcriptional regulator PhoB [Lactobacillus antri DSM 16041] gi|259168802|gb|EEW53297.1| phosphate regulon transcriptional regulator PhoB [Lactobacillus antri DSM 16041] Length = 226 Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 47/222 (21%), Positives = 84/222 (37%), Gaps = 8/222 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + I +G + L + ++ L G L Sbjct: 6 ILLVEDEESLASFMITELELEGYEVIWAKDGREALTLFEKTHVTLILLDWML--PGYDGL 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118 + R IR S VP+I I+ D G+DD + KP E + + R Sbjct: 64 TVLRRIRQTSDVPVIMITARSQTADIRLALDQGLDDYITKPFEIEELLARIRVILRRINR 123 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + GP + V G L +E ++ LM + G ++ + + I+ Sbjct: 124 EQTLPGGYAFGPFNLDLLRHRFSVAGREIHLTPKEFALMAALMKDPGIVKSRDDLLNQIW 183 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G +D A + N V+ +I LR KL + + + + R +GY + Sbjct: 184 G-YDFAGQTNTVDVYIRALRNKLGDY--RNLIRTVRGVGYVL 222 >gi|255505806|ref|ZP_05348241.3| DNA-binding response regulator MtrA [Bryantella formatexigens DSM 14469] gi|255265751|gb|EET58956.1| DNA-binding response regulator MtrA [Bryantella formatexigens DSM 14469] Length = 236 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 51/230 (22%), Positives = 91/230 (39%), Gaps = 12/230 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD ++ D A G + + + ++ L G E Sbjct: 10 LIVDDETMICDSVSAYITKQGYHVFTAGDGKEALEIFRKYPIMFVILDLML--PGMTGEE 67 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + IR S+VP+I ++ + L+ D G DD V KP +++ AR+ AI RR Sbjct: 68 ICQAIRRQSRVPVIMLTAKTQEEDVLNGLDIGADDYVTKPFSVKQLYARMEAILRRTGND 127 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFP------LPRRERRILEYLMANRGKRVAKTQIFSA 176 +D + EV L E +IL ++ + K ++ + Sbjct: 128 LKPLAEKFSWNDNDLQIDFGHSEVRKQGEALSLTPSEWKILSAMIKHPKKVFSRENLIEL 187 Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI--DWN 223 ++G D + V+++HI LRKKL N + + LGY + N Sbjct: 188 VFG-PDFDSYDRVIDTHIKNLRKKLETNPKNPVYIKTVYGLGYKFGGEEN 236 >gi|145593524|ref|YP_001157821.1| response regulator receiver [Salinispora tropica CNB-440] gi|145302861|gb|ABP53443.1| response regulator receiver [Salinispora tropica CNB-440] Length = 229 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 44/223 (19%), Positives = 86/223 (38%), Gaps = 9/223 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + + +G E R D+ ++ L G ++ Sbjct: 6 LVVDDDPALAEMLGIVLRSEGFLPSFVADGERALAAFRENRPDIVLLDLML--PGMSGID 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR S VP++ ++ + +SG DD V KP +E++AR+ A RR + + Sbjct: 64 VARSIRGESGVPIVMLTAKSDTVDVVLGLESGADDYVVKPFKPKELVARMRARLRRGEDA 123 Query: 123 NNR-----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 I + GE L E +L L + + + + Sbjct: 124 APELLTIGPPGNQITIDVPAHTVSRNGEEVKLTPLEFDLLVALARKPRQVFTREVLLEQV 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219 +G + A + +V H+ +LR K+ + + + R +GY Sbjct: 184 WG-YRHAADTRLVNVHVQRLRAKIEPDPERPEIILTVRGVGYK 225 >gi|145593184|ref|YP_001157481.1| two component transcriptional regulator [Salinispora tropica CNB-440] gi|145302521|gb|ABP53103.1| two component transcriptional regulator, winged helix family [Salinispora tropica CNB-440] Length = 240 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 53/224 (23%), Positives = 91/224 (40%), Gaps = 9/224 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + DG + DV ++ L G +E Sbjct: 16 LVVDDEQSLAKVVASYLERDGYQVRCVFDGPAALDAAREDEPDVVVLDLML--PGLDGVE 73 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +RA S +I ++ L G DD + KP RE++ARVAA+ RR + Sbjct: 74 VCRRLRAFSDCYVIMLTARTEETDKLTGLGVGADDYLTKPFSPRELVARVAAMRRRPRQP 133 Query: 123 NNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 R E R R+ + PL R E +L L +++ Q+ +A+ Sbjct: 134 RIRPEPALRRFGPLEVDVPAREARLDEVPVPLTRTEFDLLAVLSGRPNVALSRAQLITAV 193 Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 +G +E +V+ HI LR+KL + + + R +GY + Sbjct: 194 WG-DGWVGDERLVDVHIGHLRRKLGDGPARPRFILTVRGIGYRM 236 >gi|18310175|ref|NP_562109.1| two-component response regulator [Clostridium perfringens str. 13] gi|110800369|ref|YP_695848.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124] gi|168205438|ref|ZP_02631443.1| DNA-binding response regulator [Clostridium perfringens E str. JGS1987] gi|168209683|ref|ZP_02635308.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC 3626] gi|168213127|ref|ZP_02638752.1| DNA-binding response regulator [Clostridium perfringens CPE str. F4969] gi|168217845|ref|ZP_02643470.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239] gi|169346754|ref|ZP_02865707.1| DNA-binding response regulator [Clostridium perfringens C str. JGS1495] gi|18144854|dbj|BAB80899.1| two-component response regulator [Clostridium perfringens str. 13] gi|110675016|gb|ABG84003.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124] gi|169297106|gb|EDS79227.1| DNA-binding response regulator [Clostridium perfringens C str. JGS1495] gi|170663026|gb|EDT15709.1| DNA-binding response regulator [Clostridium perfringens E str. JGS1987] gi|170712265|gb|EDT24447.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC 3626] gi|170715454|gb|EDT27636.1| DNA-binding response regulator [Clostridium perfringens CPE str. F4969] gi|182380100|gb|EDT77579.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239] Length = 225 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 43/225 (19%), Positives = 91/225 (40%), Gaps = 7/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ +D +++ +G ++ + + ++ ++ G Sbjct: 3 ILIAEDEQDIRNLLELHLLKEGYTVFKAVNGLEALDILKKEHIHLALLDVM--MDGIDGF 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L +++R SQ+P+I ++ + G DD V KP E++AR+ + RR Sbjct: 61 NLLKMLREWSQIPVIFLTAKIEDDDKILGLGLGADDYVIKPFKPVELMARIKSNLRRCYK 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPL---PRRERRILEYLMANRGKRVAKTQIFSAIY 178 + E I ++ + + +E +ILE LM+N G+ K QI+ ++ Sbjct: 121 YSGENELIKIGNLELSKEGCTVKKDGEIVTLNAKEFKILEMLMSNIGRVFTKKQIYENVW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSIDW 222 + ++N + HIS LR K+ + + R +GY + Sbjct: 181 -QEEYLGDDNTIMVHISHLRDKIEEDPKNPCKIKTIRGIGYRFEK 224 >gi|302519444|ref|ZP_07271786.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. SPB78] gi|302428339|gb|EFL00155.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. SPB78] Length = 231 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 46/222 (20%), Positives = 91/222 (40%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D ++ G + + E R D+ ++ L G Sbjct: 10 LLLIEDDDAIRTALELSLSRQGHRVATAATGEDGLTKLREERPDLIVLDVML--PGIDGF 67 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR Q+P+I ++ + +SG DD V KP+ R + AR+ A+ RR + Sbjct: 68 EVCRRIRRTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGER 127 Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 ++ + + G L E R+L L G+ +++ Q+ ++ Sbjct: 128 ESSDSAVFGNLVIDRSAMTVSKDGTELQLTPTELRLLLELSRRPGQALSRQQLLRLVW-E 186 Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 D + +V++ + +LR K+ + + + R +GY +D Sbjct: 187 HDYLGDSRLVDACVQRLRAKVEDVPSSPKLIRTVRGVGYRLD 228 >gi|238919113|ref|YP_002932627.1| phosphate regulon transcriptional regulatory protein PhoB, [Edwardsiella ictaluri 93-146] gi|238868681|gb|ACR68392.1| phosphate regulon transcriptional regulatory protein PhoB, putative [Edwardsiella ictaluri 93-146] Length = 229 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 40/222 (18%), Positives = 90/222 (40%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D ++D + +G S + D+ ++ L G G ++ Sbjct: 5 ILVVEDETPIRDMVSFVLEQNGYQPLEAESYDGALSQLCEPYPDLILLDWMLPGGSGIQL 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ + A +P++ ++ + + + G DD + KP +E++AR+ A+ RR+ Sbjct: 65 IKQLKREPATRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRRIS 124 Query: 121 VSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + V + E ++L + M + + ++ Q+ + ++ Sbjct: 125 PMALEESISLQGLSLDPISHRVTVHDSAVDMGPTEFKLLHFFMTHPERVYSREQLLNHVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G + VE+ V+ HI +LRK L V + R GY Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALEGSGHDRMVQTVRGTGYRF 225 >gi|226227765|ref|YP_002761871.1| phosphate regulon transcriptional regulatory protein PhoB [Gemmatimonas aurantiaca T-27] gi|226090956|dbj|BAH39401.1| phosphate regulon transcriptional regulatory protein PhoB [Gemmatimonas aurantiaca T-27] Length = 239 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 41/224 (18%), Positives = 81/224 (36%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 +++DD + G + S + R + ++ L G V Sbjct: 11 ILVVDDEPEIVALVAYHLAKAGYRVATAASGSDALEVARRERPSLIVLDLMLPGMSGFDV 70 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIY 116 LE R + +V ++ ++ + G DD + KP E++ RV Sbjct: 71 LEQLRADESTREVAVLMLTARREEPDRIRGLSLGADDYLTKPFSPAELVLRVGAILRRTG 130 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 VS + GP+ + V G+ L E ++L L RG+ + + Sbjct: 131 SATPVSADTLVIGPLHIDRAAMTVRVDGQDVELTPTEFKLLLTLAERRGRVQGRGHLLET 190 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ ++ V+ H+ +LR KL + +++ R GY + Sbjct: 191 VW-EAAPDIQTRTVDMHVQRLRSKLGAAG--ELIETVRGFGYRL 231 >gi|188533449|ref|YP_001907246.1| DNA-binding transcriptional regulator BaeR [Erwinia tasmaniensis Et1/99] gi|188028491|emb|CAO96353.1| Two-component system response regulator [Erwinia tasmaniensis Et1/99] Length = 235 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 44/223 (19%), Positives = 89/223 (39%), Gaps = 5/223 (2%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + ++++D + I + D+ ++ L G Sbjct: 9 LILIVEDEPKLGQLMIDYLQAANYHTHHLLRGDEVVDWVKLHAPDLVLLDLML--PGMDG 66 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L + R +R+ S++P++ ++ L + G DD + KP RE++ARV AI +R + Sbjct: 67 LSVCRELRSFSELPVVMVTAKIEEIDRLLGLEIGADDYICKPFSPREMVARVKAILKRCQ 126 Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + +V + L E R+L+ L GK ++ Q+ + +Y Sbjct: 127 RGSQKTLPVSPLQVDEQRFQASWDDKPLDLTPAEFRLLKTLSQQPGKVFSREQLLNHLYD 186 Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + V + ++SHI LR+KL + + +GY + Sbjct: 187 DY-RVVTDRTIDSHIKNLRRKLEALDAEQPFIRAVYGIGYRWE 228 >gi|86607675|ref|YP_476437.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)] gi|86556217|gb|ABD01174.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)] Length = 230 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 44/221 (19%), Positives = 90/221 (40%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D A + +G + + D+ ++ L G L Sbjct: 11 ILVIEDEAKLARFVETELTCEGYRVSVASDGMAGLRAACDQNPDLVLLDWML--PGISGL 68 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +R+ P++ ++ + D+G DD V KP +E+L+R+ R+ + Sbjct: 69 EICRRLRSTGNRVPVVLMTARDEVSDRAAGLDAGADDYVVKPFSIQELLSRIRIYLRQPR 128 Query: 121 VSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S + + + R+ L +E +L YLM + + + + QI ++G Sbjct: 129 RSRDGQLVFMDLILDPVTREVTRGERQVELTAKEYDLLRYLMEHPRQVLTRQQILEHVWG 188 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D + N++E +I LR K+ + + R +GY + Sbjct: 189 C-DFTGDSNIIEVYIRYLRLKIEGPGEKRLIQTVRGVGYVL 228 >gi|303248202|ref|ZP_07334466.1| two component transcriptional regulator, winged helix family [Desulfovibrio fructosovorans JJ] gi|302490466|gb|EFL50375.1| two component transcriptional regulator, winged helix family [Desulfovibrio fructosovorans JJ] Length = 227 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 40/225 (17%), Positives = 87/225 (38%), Gaps = 11/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G + E ++ L G Sbjct: 6 ILIVEDDDDIVELLAFNLQSAGFATETAKDGYDALTKARRTPPAGIILDLML--PGLDGF 63 Query: 62 ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 E+ + ++ + P+I ++ + + G DD V KP RE++ R+ A+ +R Sbjct: 64 EVCKELKRDPKTAAAPIIMLTARGEEVDRIVGLELGADDYVVKPFSPRELILRLRAVLKR 123 Query: 119 LKVSNNRAETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 R + V + GE L E R+L L + G+ + + ++ + Sbjct: 124 HAPEQERRQVLSRDGLSVDLGAHRVTLDGEEVALTATEFRLLAELFQSTGRVLTRDRLLN 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +++G ++ V++HI +LR+KL +++ R +GY Sbjct: 184 SVWG-YEFEGYARTVDTHIRRLRQKLG--SCARMIETVRGVGYRF 225 >gi|218778734|ref|YP_002430052.1| two component transcriptional regulator, winged helix family [Desulfatibacillum alkenivorans AK-01] gi|218760118|gb|ACL02584.1| two component transcriptional regulator, winged helix family [Desulfatibacillum alkenivorans AK-01] Length = 229 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 48/224 (21%), Positives = 94/224 (41%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G A + G + + D+ ++ L G+ + Sbjct: 7 ILIVEDEPKIAEGLAAYLENAGFRTHCLDRGDRAARFVRQEAPDLVLLDIML--PGKDGM 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 E+ + +R+ SQ+P+I ++ L + G DD + KP RE++ARV Sbjct: 65 EVCKELRSFSQIPIIMLTARVEEIDRLLGLELGADDYICKPFSPREVVARVKAVLRRSNT 124 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + R GPI + D R+ V G L E IL+ +M+ + ++ ++ Sbjct: 125 PQEESKRITEGPIILDEDSREVSVGGNSLKLTPSEFMILKVMMSRPNRVFSRNELLDLAI 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221 G + ++SHI LRKK++ + + S GY + Sbjct: 185 G-SQFEGYDRTIDSHIRNLRKKIKKALPDLECIHSIYGAGYKFN 227 >gi|16799392|ref|NP_469660.1| hypothetical protein lin0315 [Listeria innocua Clip11262] gi|46906528|ref|YP_012917.1| DNA-binding response regulator [Listeria monocytogenes serotype 4b str. F2365] gi|47091424|ref|ZP_00229221.1| DNA-binding response regulator [Listeria monocytogenes str. 4b H7858] gi|116871681|ref|YP_848462.1| DNA-binding two-component response regulator [Listeria welshimeri serovar 6b str. SLCC5334] gi|226222923|ref|YP_002757030.1| two-component response regulator [Listeria monocytogenes Clip81459] gi|254825660|ref|ZP_05230661.1| DNA-binding response regulator [Listeria monocytogenes FSL J1-194] gi|254853439|ref|ZP_05242787.1| DNA-binding response regulator [Listeria monocytogenes FSL R2-503] gi|254932515|ref|ZP_05265874.1| DNA-binding two-component system response regulator [Listeria monocytogenes HPB2262] gi|254992491|ref|ZP_05274681.1| hypothetical protein LmonocytoFSL_05021 [Listeria monocytogenes FSL J2-064] gi|255022387|ref|ZP_05294373.1| hypothetical protein LmonocyFSL_00585 [Listeria monocytogenes FSL J1-208] gi|300764580|ref|ZP_07074572.1| DNA-binding response regulator [Listeria monocytogenes FSL N1-017] gi|16412744|emb|CAC95548.1| lin0315 [Listeria innocua Clip11262] gi|46879793|gb|AAT03094.1| DNA-binding response regulator [Listeria monocytogenes serotype 4b str. F2365] gi|47020101|gb|EAL10837.1| DNA-binding response regulator [Listeria monocytogenes str. 4b H7858] gi|116740559|emb|CAK19679.1| DNA-binding two-component response regulator [Listeria welshimeri serovar 6b str. SLCC5334] gi|225875385|emb|CAS04082.1| Putative two-component response regulator [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258606809|gb|EEW19417.1| DNA-binding response regulator [Listeria monocytogenes FSL R2-503] gi|293584070|gb|EFF96102.1| DNA-binding two-component system response regulator [Listeria monocytogenes HPB2262] gi|293594905|gb|EFG02666.1| DNA-binding response regulator [Listeria monocytogenes FSL J1-194] gi|300514687|gb|EFK41742.1| DNA-binding response regulator [Listeria monocytogenes FSL N1-017] gi|328467897|gb|EGF38937.1| hypothetical protein LM1816_09180 [Listeria monocytogenes 1816] gi|328476127|gb|EGF46836.1| hypothetical protein LM220_01767 [Listeria monocytogenes 220] gi|332310705|gb|EGJ23800.1| Transcriptional regulatory protein walR [Listeria monocytogenes str. Scott A] Length = 237 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 48/229 (20%), Positives = 95/229 (41%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + + L + D+ ++ L G + Sbjct: 6 ILVVDDEKPIADIVKFNLNKEGFDVYCAYDGDEALELVEEVQPDLILLDIML--PGRDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R +P+I ++ S + + G DD V KP +RE++ARV A RR Sbjct: 64 EVCREVRKKYDMPIIMVTAKDSEIDKVIGLELGADDYVTKPFSNRELIARVKANLRRHSQ 123 Query: 122 SNNRAETGPIRV---------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 ++ A D +GE L RE +L YL + G+ + + Sbjct: 124 VSSNAAEEEENSELEIGSLIIHPDAYVASKRGETIELTHREFELLHYLAKHMGQVMTREH 183 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + ++G +D + V+ + +LR+K+ + + ++R +GY + Sbjct: 184 LLQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPAWLVTRRGVGYYL 231 >gi|238752450|ref|ZP_04613926.1| Transcriptional regulatory protein baeR [Yersinia rohdei ATCC 43380] gi|238709299|gb|EEQ01541.1| Transcriptional regulatory protein baeR [Yersinia rohdei ATCC 43380] Length = 241 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 46/221 (20%), Positives = 86/221 (38%), Gaps = 5/221 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + + G + A + ++ L G + Sbjct: 17 LIVEDEPKLGQLLVDYLQAAGYRTQWLTKGTEVIDAVRQAPPSIILLDLML--PGLDGIS 74 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR S VP++ ++ L + G DD + KP RE++ARV I RR + Sbjct: 75 ICREIRRFSNVPIMMVTAKTEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCQQQ 134 Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 +A + QG + L E R+L+ L G ++ Q+ + +Y + Sbjct: 135 PEQAGDTATLIIDESRFQASYQGHMLELTPAEFRLLKILATQPGHVFSREQLLNNLYDDY 194 Query: 182 DEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 V + ++SHI LR+KL + + +GY + Sbjct: 195 -RVVTDRTIDSHIKNLRRKLEALDGEKPFIRAVYGMGYRWE 234 >gi|228910361|ref|ZP_04074177.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis IBL 200] gi|228849313|gb|EEM94151.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis IBL 200] Length = 241 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 42/228 (18%), Positives = 93/228 (40%), Gaps = 10/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D +++ +G + + E + D+ ++ L Sbjct: 16 ILLVEDDISIQEMVEKYLLKEGFQVTMASDGEAGVQTFFKSSFDLVILDIM--MPKLDGL 73 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL------ARVAAI 115 E+ RIIR S VP++ +S + G DD + KP E++ R + Sbjct: 74 EVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELVARVKAGIRRSTK 133 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 Y + + + G + + E G L +E IL+ + N+ + K QI++ Sbjct: 134 YSATETTEKMIQIGDLTIDPINFTVEKNGNPLKLTLKEFEILKLFVKNQNRVFTKAQIYT 193 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 ++ + ++NV+ H+ +LR+K+ + + + + +GY ++ Sbjct: 194 LVWNE-EYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLEV 240 >gi|223043539|ref|ZP_03613584.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Staphylococcus capitis SK14] gi|314933846|ref|ZP_07841211.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus caprae C87] gi|222443027|gb|EEE49127.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Staphylococcus capitis SK14] gi|313653996|gb|EFS17753.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus caprae C87] Length = 236 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 40/230 (17%), Positives = 90/230 (39%), Gaps = 14/230 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + G +E E + ++ ++ L + +E Sbjct: 6 LVVDDEQSIVTLLKYNLETAGYIVEVAYDGEEALKKVEEEQPELIVLDVML--PKKDGIE 63 Query: 63 LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112 + + IR+ VP++ ++ + + G DD + KP RE ++ Sbjct: 64 VCKSIRSDKNLVPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRRSKF 123 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + IR+ + + E+ L +E +L YL+ +G+ + + Sbjct: 124 VNEIEKEDTDEEDIIIDSIRIRPEFFEVYKDEELLELTPKEFELLLYLIERQGRVITREH 183 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221 + ++++ ++ A + +V+ HIS LR KL + + R LGY ++ Sbjct: 184 MLNSVW-NYEFAGDSRIVDVHISHLRDKLEENPKQPKLIKTVRGLGYKLE 232 >gi|134291789|ref|YP_001115558.1| two component heavy metal response transcriptional regulator [Burkholderia vietnamiensis G4] gi|134134978|gb|ABO59303.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia vietnamiensis G4] Length = 225 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 44/221 (19%), Positives = 89/221 (40%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + G S++ L R DV ++ L Sbjct: 3 ILIVEDEPKTGAYLKKGLEESGFSVDLAKDGGEGLMLAQEERYDVIVLDVML--PVLDGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120 + + +R P++ ++ +Q + + G DD + KP E+LAR+ R Sbjct: 61 GVLKRLRDTHTTPVLFLTARDDVQDRVHGLELGADDYLVKPFAFVELLARIRTLARRGPP 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 G + + R + L RE +L+ L +G+ +++TQI S ++ + Sbjct: 121 RETEHLAVGDLEIDVVRRRVKRGAVRIDLTPREFSLLQLLARRQGEVLSRTQIASYVWDM 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + NVVE I +LR K+ + + + R +GY ++ Sbjct: 181 -NFDSDTNVVEVAIRRLRAKIDDAFPVKLIHTVRGVGYVLE 220 >gi|331266799|ref|YP_004326429.1| DNA-binding response regulator [Streptococcus oralis Uo5] gi|326683471|emb|CBZ01089.1| DNA-binding response regulator [Streptococcus oralis Uo5] Length = 218 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 49/220 (22%), Positives = 101/220 (45%), Gaps = 6/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++++G D G + L+ + +V+ + + L Sbjct: 3 ILIVEDEEMIREGISDYLTDCGYETIEAADGQEA--LEKFSSYEVALVLLDIQMPKFNGL 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ IR SQVP++ ++ + + + F S D + KP + RV AI++R Sbjct: 61 EVLAEIRKSSQVPVLMLTAFQDEEYKMSAFASLADGYLEKPFSLSLLKVRVDAIFKRYYD 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + +V + + G+ + +E IL+YL+ N G+ + ++QI A++ Sbjct: 121 TGRVFSYKDTKVDFESYSASLAGQEVAINAKELEILDYLVKNEGRALTRSQIIDAVWKAT 180 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 DE + V++ +I +LRKKL D + + R +GY ++ Sbjct: 181 DEVPFDRVIDVYIKELRKKLDL----DCILTVRNVGYKLE 216 >gi|310644837|ref|YP_003949596.1| alkaline phosphatase synthesis transcriptional regulatory protein phop [Paenibacillus polymyxa SC2] gi|309249788|gb|ADO59355.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Paenibacillus polymyxa SC2] Length = 243 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 44/231 (19%), Positives = 85/231 (36%), Gaps = 17/231 (7%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + + + D+ ++ L G + Sbjct: 5 ILVVDDEQPIADILKFNLEKEGYEVICAFDGISAVDIAVKQQPDLILLDLML--PGMDGM 62 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI------------HHREI 108 ++ R +R H Q P+I ++ + + G DD V KP R+ Sbjct: 63 DVCREVRGHQLQTPIIMLTAKDGEIDKVLGLELGADDYVTKPFSTRELLARVKAQMRRQQ 122 Query: 109 LARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 R + G + +D G L RE +L Y+ N GK + Sbjct: 123 RGVAGTPESRPQEDKQGLRVGDLFFDADMYTAYKNGTPLDLTHREYELLYYMAKNAGKVM 182 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGY 218 + + A++G F+ + V+ I +LR+K+ + + ++R LGY Sbjct: 183 TREHLLQAVWG-FEYYGDVRTVDVTIRRLREKIEENPSKPETILTRRGLGY 232 >gi|296329647|ref|ZP_06872132.1| two-component response regulator (YkoH) [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674044|ref|YP_003865716.1| two-component response regulator [Bacillus subtilis subsp. spizizenii str. W23] gi|296153145|gb|EFG94009.1| two-component response regulator (YkoH) [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412288|gb|ADM37407.1| two-component response regulator (paired with YkoH) [Bacillus subtilis subsp. spizizenii str. W23] Length = 228 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 48/224 (21%), Positives = 94/224 (41%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G ++ + + R + ++ L G L Sbjct: 6 ILIVEDEEKIARVLQLELEYEGYNVTIKYNGTEGLNAAAEGRYSLVLLDVML--PGLSGL 63 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +R Q P+I ++ S+ + D G +D V KP E+LAR+ R+ Sbjct: 64 EVLRRLRKTDQQTPVILLTARDSIPDKVTGLDIGANDYVTKPFEIEELLARIRVALRQNG 123 Query: 121 VSNNRAETGPIRVF----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 +T R+ + L RE +L Y++ + + + + QI ++ Sbjct: 124 TKTEDIDTFLTYDDLRVNEKTREVRRGDKEVELTPREFDLLVYMLKHPQQVLTREQILNS 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G FD + NVV+ +I +RKKL + + R +GY+I Sbjct: 184 VWG-FDYIGDTNVVDVYIRYIRKKLDYPYEKQLIHTVRGVGYAI 226 >gi|254511481|ref|ZP_05123548.1| phosphate regulon transcriptional regulatory protein PhoB [Rhodobacteraceae bacterium KLH11] gi|221535192|gb|EEE38180.1| phosphate regulon transcriptional regulatory protein PhoB [Rhodobacteraceae bacterium KLH11] Length = 229 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 49/221 (22%), Positives = 91/221 (41%), Gaps = 4/221 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61 ++++D ++ +G + S + L R D+ ++ + G +V Sbjct: 9 LVVEDELAQREVLAYNLDAEGFRVSRAASGDEALLLVEEDRPDIIVLDWMMPNLSGIEVC 68 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + +P+I +S + ++G DD V KP E++ARV RR++ Sbjct: 69 RRLKTRPDTRSIPIIMLSARSEEVDKVRGLETGADDYVVKPYSVVELMARVRTQLRRVRP 128 Query: 122 SNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + I + S+ + L E R+L M G+ ++ Q+ ++G Sbjct: 129 ATVGIRLEFDDIILDSETHKVSRDDKPLKLGPTEFRLLSTFMEKPGRVWSREQLLDRVWG 188 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D V+ V+ HI +LRK L G DPV + R GY++ Sbjct: 189 R-DIYVDTRTVDVHIGRLRKALTQHGGEDPVRTVRGAGYAL 228 >gi|222098001|ref|YP_002532058.1| response regulator [Bacillus cereus Q1] gi|228960804|ref|ZP_04122441.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis serovar pakistani str. T13001] gi|229147097|ref|ZP_04275456.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus BDRD-ST24] gi|229186790|ref|ZP_04313946.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus BGSC 6E1] gi|229198686|ref|ZP_04325386.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus m1293] gi|221242059|gb|ACM14769.1| response regulator [Bacillus cereus Q1] gi|228584795|gb|EEK42913.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus m1293] gi|228596683|gb|EEK54347.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus BGSC 6E1] gi|228636346|gb|EEK92817.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus BDRD-ST24] gi|228798889|gb|EEM45866.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis serovar pakistani str. T13001] Length = 230 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 43/228 (18%), Positives = 92/228 (40%), Gaps = 10/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D +++ +G + + E D+ ++ L Sbjct: 5 ILLVEDDLSIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIM--MPKLDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115 E+ RIIR S VP++ +S + G DD + KP E+ R + Sbjct: 63 EVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 Y + + + G + + E G+ L +E IL+ + N+ + K QI++ Sbjct: 123 YSATETTEKMIQIGDLTIDPINFTVEKNGKPLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 I+ + ++NV+ H+ +LR+K+ + + + + +GY ++ Sbjct: 183 LIWNE-EYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLEV 229 >gi|184201520|ref|YP_001855727.1| two-component response regulator RegX3 [Kocuria rhizophila DC2201] gi|183581750|dbj|BAG30221.1| two-component response regulator RegX3 [Kocuria rhizophila DC2201] Length = 226 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 52/225 (23%), Positives = 99/225 (44%), Gaps = 8/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + D L G +G + A D+ ++ L G+ Sbjct: 4 ILMVEDEESLSDPLAYLLGREGFDVTVVADGIRAVAEFDRAGADLVLLDLML--PGQSGT 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IR S VP+I ++ + + + G DD V KP RE++AR+ A+ RR Sbjct: 62 EVCKQIRQRSNVPIIMLTAKDAEIDKVLGLELGADDYVTKPYSSRELVARIRAVLRRRAE 121 Query: 122 SNNRAETG----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + P+R+ + V GE +P +E +LE L+ N G+ + + Q+ + Sbjct: 122 PEELITSTVAAGPVRMDVERHVVHVDGEAVAMPLKEFELLEMLLRNAGRVLTRGQLIDRV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 +G D + ++ H+ +LR K+ + + + R LGY + Sbjct: 182 WG-SDYVGDTKTLDVHVKRLRSKVEPDPSAPQHIVTVRGLGYKFE 225 >gi|251794486|ref|YP_003009217.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247542112|gb|ACS99130.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 240 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 45/229 (19%), Positives = 92/229 (40%), Gaps = 15/229 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++I+D +++D ++G S+ + E + DV ++ L + Sbjct: 5 LVIEDDVMMRDMLSMYLSEEGYSVRQAGTGEEGLRIVQEFAPDVVLLDLML--PDMDGMG 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI-----------LAR 111 + IR S VP++ +S + + +G DD + KP E+ Sbjct: 63 VCASIRERSHVPIMILSMKSEVSERVQALKAGADDYMCKPFSMHEMTARVEALIRRSQFS 122 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 A+ PI++ S+ R V+G++ E +++ +++ GK ++ Sbjct: 123 ATEAEAASASEAEEADLAPIQLDSERRMLLVRGKLIETTFSEFEMMKLFLSHPGKVFSRE 182 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219 ++ + I G FD V + ++ HI LRKK+ N + + GY Sbjct: 183 ELINTIRG-FDSFVTDRAIDVHIVNLRKKIEQNPKEPRLIRTVWGFGYK 230 >gi|159044087|ref|YP_001532881.1| phosphate regulon transcriptional regulatory protein [Dinoroseobacter shibae DFL 12] gi|157911847|gb|ABV93280.1| phosphate regulon transcriptional regulatory protein [Dinoroseobacter shibae DFL 12] Length = 228 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 47/221 (21%), Positives = 91/221 (41%), Gaps = 4/221 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61 ++++D +D +G + + + + D+ ++ L G +V Sbjct: 8 LVVEDEPAQRDVLCYNLEAEGFRVVQAENGDEAMVMVEEETPDIIVLDWMLPAVSGIEVC 67 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + +P+I +S + ++G DD V KP E++ARV A RR++ Sbjct: 68 RRLKSRPDTRAIPIIMLSARSEEVDRVRGLETGADDYVVKPYSVVELMARVRAQLRRVRP 127 Query: 122 SNNRAETGPIRV--FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + + ++ + L E R+L M G+ ++ Q+ ++G Sbjct: 128 ATVGQQLRYDDILLDAESHRVFRDDQALKLGPTEFRLLATFMEKPGRVWSREQLLDRVWG 187 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D V+ V+ HI +LRK L G DPV + R GY++ Sbjct: 188 R-DIYVDTRTVDVHIGRLRKALCQHGGTDPVRTVRGAGYAL 227 >gi|24113461|ref|NP_707971.1| DNA-binding transcriptional regulator BaeR [Shigella flexneri 2a str. 301] gi|30063524|ref|NP_837695.1| DNA-binding transcriptional regulator BaeR [Shigella flexneri 2a str. 2457T] gi|110806049|ref|YP_689569.1| DNA-binding transcriptional regulator BaeR [Shigella flexneri 5 str. 8401] gi|24052492|gb|AAN43678.1| transcriptional response regulatory protein (sensor BaeS) [Shigella flexneri 2a str. 301] gi|30041777|gb|AAP17504.1| transcriptional response regulatory protein (sensor BaeS) [Shigella flexneri 2a str. 2457T] gi|110615597|gb|ABF04264.1| transcriptional response regulatory protein [Shigella flexneri 5 str. 8401] gi|281601525|gb|ADA74509.1| Transcriptional response regulatory protein [Shigella flexneri 2002017] gi|313649874|gb|EFS14294.1| transcriptional regulatory protein baeR [Shigella flexneri 2a str. 2457T] gi|332755913|gb|EGJ86267.1| transcriptional regulatory protein baeR [Shigella flexneri K-671] gi|332756855|gb|EGJ87200.1| transcriptional regulatory protein baeR [Shigella flexneri 2747-71] gi|332766432|gb|EGJ96641.1| response regulator [Shigella flexneri 2930-71] gi|333002115|gb|EGK21680.1| transcriptional regulatory protein baeR [Shigella flexneri VA-6] gi|333002508|gb|EGK22070.1| transcriptional regulatory protein baeR [Shigella flexneri K-218] gi|333017079|gb|EGK36400.1| transcriptional regulatory protein baeR [Shigella flexneri K-304] Length = 240 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 42/224 (18%), Positives = 86/224 (38%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + I + + + D+ ++ L G L Sbjct: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLAYVRQTPPDLILLDLML--PGTDGL 70 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118 L R IR S VP++ ++ L + G DD + KP RE + + + Sbjct: 71 TLCREIRRFSDVPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + P+ + +G++ L E R+L+ L GK ++ Q+ + +Y Sbjct: 131 QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190 Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + V + ++SHI LR+KL + + + +GY + Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 >gi|311896323|dbj|BAJ28731.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 225 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 45/219 (20%), Positives = 89/219 (40%), Gaps = 5/219 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + + +G + + D+ ++ L G ++ Sbjct: 6 LVVDDDTALAEMLGIVLRGEGFEPFFVADGDKALAAFRETKPDLVLLDLML--PGRDGID 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IRA S +P++ ++ + +SG DD V KP +E++ARV A RR + Sbjct: 64 VCRQIRAESGIPIVMLTAKTDTVDIVVGLESGADDYVTKPFKPKELVARVRARLRRAEEP 123 Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 T + G + +G PL E +L L + + + ++G + Sbjct: 124 TPEQLTIGDLVIDVAGHSVKREGRGIPLTPLEFDLLVALARKPWQVFTREVLLEQVWG-Y 182 Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219 A + +V H+ +LR K+ + V + R +GY Sbjct: 183 RHAADTRLVNVHVQRLRSKIEKDPERPEIVVTVRGVGYK 221 >gi|302523820|ref|ZP_07276162.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. AA4] gi|302432715|gb|EFL04531.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. AA4] Length = 229 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 53/227 (23%), Positives = 99/227 (43%), Gaps = 11/227 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D D L +G + + + D+ ++ L G + Sbjct: 5 LIVEDEESFADPLAFLLRKEGFTAAVAVTGQQALEEFDRNGADIVLLDLML--PGMSGTD 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + +R S VP+I ++ S + + G DD V KP RE++ARV A+ RR Sbjct: 63 VCKQLRQRSAVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARVRAVLRRGGEP 122 Query: 123 NNRAE-------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + E GP+R+ + V G LP +E +LEYL+ N G+ + + Q+ Sbjct: 123 GSDGELAPLVLSAGPVRMDVERHVVTVDGGEVSLPLKEFDLLEYLLRNVGRVLTRGQLID 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 ++G D + ++ H+ +LR K+ + + + R LGY + Sbjct: 183 RVWGA-DYVGDTKTLDVHVKRLRSKIEPDPGSPRHLVTVRGLGYKFE 228 >gi|119963548|ref|YP_946794.1| response regulator of two-component system [Arthrobacter aurescens TC1] gi|119950407|gb|ABM09318.1| response regulator of two-component system [Arthrobacter aurescens TC1] Length = 239 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 94/224 (41%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ G + + D++ ++ L Sbjct: 13 LLVVDDEPNIRELLSTSLRFAGFEVVAAANGREALAAADLHSPDLAVLDVML--PDMDGF 70 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R +R A P++ ++ + + G DD V KP E++AR+ A+ RR + Sbjct: 71 TVTRRLRAAGKHFPVLFLTAKDDTEDKVTGLTVGGDDYVTKPFSLDEVVARIRAVLRRTQ 130 Query: 121 VSNNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + D + G V L E ++L YLM N + ++K QI + Sbjct: 131 PLEDDDAVIRVDDLELDDDAHEVRRGGTVIELSPTEFKLLRYLMLNPNRVLSKAQILDHV 190 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + +D + ++VES+IS LR+K+ + + +KR +GY + Sbjct: 191 W-EYDFNGDASIVESYISYLRRKVDIDPDAAALIQTKRGVGYVL 233 >gi|327438192|dbj|BAK14557.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Solibacillus silvestris StLB046] Length = 237 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 48/229 (20%), Positives = 90/229 (39%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + + + D+ ++ L + Sbjct: 6 ILVVDDEKPIADILQFNLIKEGYRVICAYDGDEALQRVEEEQPDLMLLDIML--PKRDGM 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R P+I ++ S + + G DD V KP RE++ARV A RRL V Sbjct: 64 EVCREVRKKYDFPIIMLTAKGSEIDKVLGLEMGADDYVTKPFSTRELIARVKANMRRLNV 123 Query: 122 SNNRAETGPIRVF---------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 E D + E L RE +L YL + G+ + + Sbjct: 124 PAQIEEAQAETNDIVVGSLTIQPDAYLVLKRDESIELTHREFELLHYLAKHIGQVMTREH 183 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220 + ++G +D + V+ I +LR+K+ + + ++R +GY + Sbjct: 184 LLQTVWG-YDYFGDVRTVDVTIRRLREKIEDNPSHPLWIVTRRGVGYYL 231 >gi|326387442|ref|ZP_08209051.1| two component transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] gi|326208098|gb|EGD58906.1| two component transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] Length = 229 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 49/223 (21%), Positives = 100/223 (44%), Gaps = 4/223 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +L++D + + F +G + + L + D+ ++ + G G +V Sbjct: 6 LLLVEDDTALAELVEYRFRGEGYDVRTTADGDEALLLAAEDTPDLVLLDWMIGGTSGIEV 65 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 R +A + VP+I ++ + ++G DD V KP RE++ARV A+ RR++ Sbjct: 66 CRRLRRQKATAHVPIIMLTARSDEDDRVRGLETGADDYVTKPFSPRELIARVGAVLRRVR 125 Query: 121 V--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + G + + + + + E R+L + M + G+ ++ Q+ A++ Sbjct: 126 PALAGETITVGDLSLDPTAHRVTRKAQSIKIGPTEFRLLRHFMEHPGRVFSRGQLLDAVW 185 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 G +E V+ HI +LR+ + DPV + R GY+++ Sbjct: 186 GSG-SDIELRTVDVHIRRLRQAIAIPGAPDPVRTVRSAGYALE 227 >gi|295838626|ref|ZP_06825559.1| DNA-binding response regulator MtrA [Streptomyces sp. SPB74] gi|295827102|gb|EFG65240.1| DNA-binding response regulator MtrA [Streptomyces sp. SPB74] Length = 231 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 46/222 (20%), Positives = 91/222 (40%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D ++ G + + E R D+ ++ L G Sbjct: 10 LLLIEDDDAIRTALELSLTRQGHRVATAATGEDGLTKLREERPDLIVLDVML--PGIDGF 67 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR Q+P+I ++ + +SG DD V KP+ R + AR+ A+ RR + Sbjct: 68 EVCRRIRRTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGER 127 Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 ++ + + G L E R+L L G+ +++ Q+ ++ Sbjct: 128 ESSDSAAFGNLVIDRSAMTVAKDGTELQLTPTELRLLLELSRRPGQALSRQQLLRLVW-E 186 Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 D + +V++ + +LR K+ + + + R +GY +D Sbjct: 187 HDYLGDSRLVDACVQRLRAKVEDVPSSPKLIRTVRGVGYRLD 228 >gi|291550471|emb|CBL26733.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus torques L2-14] Length = 229 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 45/223 (20%), Positives = 100/223 (44%), Gaps = 6/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + ++ +G + L + D++ I ++ Sbjct: 6 ILVVDDESRMRKLVKDFLTREGYMVLEAGDGMEAMDLFYEDK-DIALIILDVMMPKMDGW 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R +R S+VP+I ++ + L F+ GVD+ ++KP + ++ARV AI RR Sbjct: 65 QVCREVRETSKVPIIMLTARSEERDELQGFELGVDEYISKPFSPKILVARVNAILRRTLG 124 Query: 122 SNNRAETGP--IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + I + ++ G L +E +L Y + N+G +++ +I + ++ Sbjct: 125 AVGNDSLEAGGITIDKSAHIVKIDGTPVELSYKEFELLTYFIENQGIALSREKILNNVW- 183 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D + +++H+ KLR KL +K + + + +GY + Sbjct: 184 NYDYFGDARTIDTHVKKLRSKLGDKG--EYIKTIWGMGYKFEV 224 >gi|126702215|gb|ABO26811.1| CpxR [Tatlockia micdadei] Length = 223 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 48/221 (21%), Positives = 89/221 (40%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D + +G + + E + D ++ L Sbjct: 5 ILIVDDDTELTDLLVQYLEPEGFEVVCVHDGENAVKKALNQPFDAIILDVML--PKLNGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IR H + P++ ++ + + G DD + KP + RE++AR+ AI RR + Sbjct: 63 EVLKAIREHLETPVLMLTARGDDIDRIVGLEIGADDYLPKPCNPRELVARLRAILRRTQK 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + GEV L E ILE L+ + G+ +K ++ G Sbjct: 123 IPAQRPIIEHQGILVDESLPNHGEVLELTNAEFNILEMLIKSPGQAFSKEELTEYALGRK 182 Query: 182 DEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221 + ++ HIS LR KL + G + + R GY + Sbjct: 183 -YTAYDRSIDVHISNLRNKLGDNEEGEPIIKTVRGFGYMFN 222 >gi|163847093|ref|YP_001635137.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|163668382|gb|ABY34748.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] Length = 245 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 39/226 (17%), Positives = 84/226 (37%), Gaps = 9/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD + + D+ ++ Sbjct: 21 ILVADDDPSIGRLIQTALPTQQYETTVVANGLEALEAFERETYDLIFLDVM--MPFVDGF 78 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116 + IRA S VP++ I+ + F G D+ + KP E +AR Sbjct: 79 DACERIRAKSDVPIVIITAREGTDDIVQDFRRGADEYITKPFKVAEFVARVEAILRRVDM 138 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 ++ + + + G + + + V+G+ L E +L +L AN G+ + +F Sbjct: 139 QKARTAPTFVQVGELVIDAAAHKVAVRGKEVKLTPMEFELLYFLAANAGQVFTREVLFRE 198 Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 ++G ++ E N+V+ + +LR+K+ + + R +GY ++ Sbjct: 199 VWG-YEYVGETNLVDVCVRRLREKVEVEPSKPKIITTVRGVGYKLE 243 >gi|261346399|ref|ZP_05974043.1| phosphate regulon transcriptional regulatory protein PhoB [Providencia rustigianii DSM 4541] gi|282565717|gb|EFB71252.1| phosphate regulon transcriptional regulatory protein PhoB [Providencia rustigianii DSM 4541] Length = 229 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 41/222 (18%), Positives = 94/222 (42%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++++D A +++ + +G + + D+ ++ + G G +V Sbjct: 5 ILVVEDEAPIREMVCFVLEQNGFQPTEADDYDSAIAQLVDPLPDLVLLDWMIPGGSGIQV 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ + A VP++ ++ + + + G DD + KP +E++ARV AI RR+ Sbjct: 65 IKHMKRDSATRDVPVMMLTARGEEEDRVKGLEVGADDYLIKPFSPKELIARVKAILRRIS 124 Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + E + + + E ++L + M + + ++ Q+ + ++ Sbjct: 125 PMATEDIIEMNGLVLDPTSHRVTSNETPIDMGPTEYKLLHFFMTHPERVYSREQLLNNVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G + VE+ V+ HI +LRK L + + + R GY Sbjct: 185 GA-NVYVEDRTVDVHIRRLRKALEQEGHDKMIQTVRGTGYRF 225 >gi|210610307|ref|ZP_03288336.1| hypothetical protein CLONEX_00526 [Clostridium nexile DSM 1787] gi|210152537|gb|EEA83543.1| hypothetical protein CLONEX_00526 [Clostridium nexile DSM 1787] Length = 229 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 48/227 (21%), Positives = 88/227 (38%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + D G +E N E D+ ++ L G Sbjct: 4 ILIVEDEEAIADLEKDYLELSGFEVEVANDGETGLKKALENDYDLFILDLML--PGVDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R P+I +S + G DD + KP E++ARV A R Sbjct: 62 EICRQVRDEKNTPIIMVSAKKDDIDKIRGLGLGADDYITKPFSPSELVARVKAHMARYDR 121 Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N E +++ + R V GE P +E +L +L ++ K ++F Sbjct: 122 LIGSAAEENKVIEIRGLKIDTTARRVWVNGEEKPFTTKEFDLLTFLASHPNHVYTKDELF 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 S I+ + + + V HI K+R+K+ + +++ +GY Sbjct: 182 SEIWDM-ESIGDIATVTVHIKKIREKIEFDTSKPQYIETIWGVGYRF 227 >gi|254385529|ref|ZP_05000855.1| two-component system response regulator [Streptomyces sp. Mg1] gi|194344400|gb|EDX25366.1| two-component system response regulator [Streptomyces sp. Mg1] Length = 243 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 48/229 (20%), Positives = 90/229 (39%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V++ +G + +S D+ ++ L Sbjct: 10 ILVVDDEPAVREALRRSLAFEGYGAQTAVDGLDALDKAASYAPDLIVLDI--QMPRMDGL 67 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 R +R A S P++ ++ ++ + D+G DD + KP E+ ARV A+ RR Sbjct: 68 TAARRLRSAGSTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARVRALLRRSA 127 Query: 121 VSNNRAETGPI---------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + A R+ R+ G L R E +LE +A+ + + + Sbjct: 128 YAAPAAGGAEPEDALTFGDLRMDLATREVTRAGRPVELTRTEFTLLEMFLAHPRQVLTRE 187 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 QI ++G FD N ++ ++ LR+K V + R +GY + Sbjct: 188 QILKTVWG-FDFEPSSNSLDVYVMYLRRKTEAGGESRLVHTVRGVGYVL 235 >gi|218234694|ref|YP_002369334.1| DNA-binding response regulator [Bacillus cereus B4264] gi|228923280|ref|ZP_04086569.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228954807|ref|ZP_04116827.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229072041|ref|ZP_04205250.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus F65185] gi|229180856|ref|ZP_04308192.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus 172560W] gi|229192737|ref|ZP_04319696.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus ATCC 10876] gi|218162651|gb|ACK62643.1| DNA-binding response regulator [Bacillus cereus B4264] gi|228590827|gb|EEK48687.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus ATCC 10876] gi|228602619|gb|EEK60104.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus 172560W] gi|228710975|gb|EEL62941.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus F65185] gi|228804796|gb|EEM51395.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228836374|gb|EEM81726.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 230 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 42/228 (18%), Positives = 91/228 (39%), Gaps = 10/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D +++ +G + + E D+ ++ L Sbjct: 5 ILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIM--MPKLDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115 E+ RIIR S VP++ +S + G DD + KP E+ R + Sbjct: 63 EVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 Y + + G + + E G+ L +E IL+ + N+ + K QI++ Sbjct: 123 YSATETIEKMIQIGDLTIDPINFTVEKNGKPLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 ++ + ++NV+ H+ +LR+K+ + + + + +GY ++ Sbjct: 183 LVWNE-EYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLEV 229 >gi|116496230|ref|YP_807964.1| DNA-binding response regulator [Lactobacillus casei ATCC 334] gi|191639755|ref|YP_001988921.1| Putative response regulator [Lactobacillus casei BL23] gi|239630681|ref|ZP_04673712.1| DNA-binding response regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301067832|ref|YP_003789855.1| OmpR family DNA-binding response regulator [Lactobacillus casei str. Zhang] gi|116106380|gb|ABJ71522.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus casei ATCC 334] gi|190714057|emb|CAQ68063.1| Putative response regulator [Lactobacillus casei BL23] gi|239526964|gb|EEQ65965.1| DNA-binding response regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300440239|gb|ADK20005.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus casei str. Zhang] Length = 237 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 50/230 (21%), Positives = 94/230 (40%), Gaps = 14/230 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + E + D+ ++ L L Sbjct: 5 ILVVDDEKPISDIVKFNLDKEGYDVVTAYDGEEALKKVEAESPDLILLDLML--PKIDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR P+I ++ S + + G DD V KP +RE++ARV A RR Sbjct: 63 EVARQIRKEHDTPIIMLTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRTAS 122 Query: 122 SNNRAETGPI----------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 SN + + D +GE L RE +L YL + G+ + + Sbjct: 123 SNAASNEEDEANKELEVGDLTIHPDAYTVSKRGENIELTHREFELLHYLARHLGQVMTRE 182 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + ++G +D + V+ + +LR+K+ + + + ++R +GY + Sbjct: 183 HLLQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPEWLVTRRGVGYYL 231 >gi|291549838|emb|CBL26100.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus torques L2-14] Length = 228 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 89/224 (39%), Gaps = 6/224 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + +G S E S + L + + + L+ G Sbjct: 4 ILIVEDDTNINNLLQEALSKEGYSCEQAFSGTEAKLLLNMQEHGYALVLLDLMLPGIPGE 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + IR +P+I ++ SL ++ SG DD + KP RE+LARV R + Sbjct: 64 AVLEEIRKKGNLPVIVLTAKDSLDEKVEVLTSGADDYITKPFEIREVLARVQVQLRHKEE 123 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEV-----FPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + Q E+ + ++E ILE L+ N + +K IF Sbjct: 124 KEAEEQHTLSFKDMLLNRDTFQVEIDGKILPKITKQEFAILELLLRNPKQVFSKEDIFEY 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + E ++ HIS +RKK++ + +++ +GY + Sbjct: 184 AWDEP-YMGETKTLDVHISNIRKKIKQVTSEEYIETVWGIGYRL 226 >gi|302537791|ref|ZP_07290133.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. C] gi|302446686|gb|EFL18502.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. C] Length = 226 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 43/222 (19%), Positives = 88/222 (39%), Gaps = 7/222 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +LI+D +++G G + + E L R ++ ++ L G ++ Sbjct: 5 LLIEDDPSIREGVGLGLRRRGHEVSAAATGEEGLALIGGFRPELVLLDLML--PGINGVQ 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRRL 119 + R IR SQVP+I ++ + ++G DD + KP I AR+ + Sbjct: 63 VCRRIRETSQVPIIMLTARGDDFDIVVGLEAGADDYIVKPARTEIIEARIKAVLRRLKGP 122 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 G + + G GE L E ++L +L A+ + ++ Q+ ++ Sbjct: 123 GGLPGVEHHGELAIDRAGLTVAKNGERVALAPSEIKLLLHLSASPEQVFSRQQLLEYVW- 181 Query: 180 LFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220 + +V++ + +LR K+ + + + R GY Sbjct: 182 EHSYHADARLVDACVRRLRNKVEDPDGHPRYIQTVRGFGYRF 223 >gi|253995872|ref|YP_003047936.1| two component transcriptional regulator PhoB [Methylotenera mobilis JLW8] gi|253982551|gb|ACT47409.1| two component transcriptional regulator PhoB, winged helix family [Methylotenera mobilis JLW8] Length = 235 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 49/224 (21%), Positives = 92/224 (41%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D +++ G + S E L D+ ++ L G L Sbjct: 5 ILVIEDEPAIQELLALNITQAGHNAIRALSGEIALDLMRETVPDLILLDWML--PGMNGL 62 Query: 62 ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IY 116 EL R +++ +P+I ++ + + G DD V KP RE+ AR+ A Sbjct: 63 ELARKLKSDTYTKNIPIIMLTARGEEYDKVRGLEVGADDYVTKPFSPRELNARIKAVLRR 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 R +++++ E +R+ + L E R+L + M N + ++Q+ Sbjct: 123 RAPQMTDDPIELNGLRLDPTTHRVTGNQKTIDLGPTEFRLLHFFMTNSERVHTRSQLLDK 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G VE+ V+ HI +LR L D + + R GY + Sbjct: 183 VWGDR-VFVEDRTVDVHIRRLRNALSASGHEDLIQTVRGAGYRL 225 >gi|148998276|ref|ZP_01825745.1| DNA-binding response regulator VncR [Streptococcus pneumoniae SP11-BS70] gi|149010780|ref|ZP_01832151.1| DNA-binding response regulator VncR [Streptococcus pneumoniae SP19-BS75] gi|168485715|ref|ZP_02710223.1| VncR, response regulator [Streptococcus pneumoniae CDC1087-00] gi|168576498|ref|ZP_02722372.1| VncR, response regulator [Streptococcus pneumoniae MLV-016] gi|307067219|ref|YP_003876185.1| CheY-like receiver/winged-helix DNA-binding domain-containing response regulator [Streptococcus pneumoniae AP200] gi|307126802|ref|YP_003878833.1| VncR, response regulator [Streptococcus pneumoniae 670-6B] gi|147755919|gb|EDK62963.1| DNA-binding response regulator VncR [Streptococcus pneumoniae SP11-BS70] gi|147765261|gb|EDK72190.1| DNA-binding response regulator VncR [Streptococcus pneumoniae SP19-BS75] gi|183571082|gb|EDT91610.1| VncR, response regulator [Streptococcus pneumoniae CDC1087-00] gi|183577727|gb|EDT98255.1| VncR, response regulator [Streptococcus pneumoniae MLV-016] gi|301793794|emb|CBW36185.1| two-component system, response regulator [Streptococcus pneumoniae INV104] gi|306408756|gb|ADM84183.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Streptococcus pneumoniae AP200] gi|306483864|gb|ADM90733.1| VncR, response regulator [Streptococcus pneumoniae 670-6B] Length = 218 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 50/220 (22%), Positives = 102/220 (46%), Gaps = 6/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++++G D G + L+ + +V+ + + L Sbjct: 3 ILIVEDEEMIREGVSDYLTDCGYETIEAADGQEA--LEQFSSYEVALVLLDIQMPKLNGL 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ IR SQVP++ ++ + + + F S D + KP + RV AI++R Sbjct: 61 EVLAEIRKTSQVPVLMLTAFQDEEYKMSAFASLADGYLEKPFSLSLLKVRVDAIFKRYYD 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + +V + + G+ P+ +E IL+YL+ N G+ + ++QI A++ Sbjct: 121 TGRIFSYKDTKVDFESYSASIAGQEVPINAKELEILDYLVKNEGRALTRSQIIDAVWKAT 180 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 DE + V++ +I +LRKKL D + + R +GY ++ Sbjct: 181 DEVPFDRVIDVYIKELRKKLDL----DCILTVRNVGYKLE 216 >gi|56130694|ref|YP_145597.1| response regulator [Ralstonia metallidurans CH34] gi|94152380|ref|YP_581787.1| regulatory protein CzcR [Cupriavidus metallidurans CH34] gi|2500741|sp|Q44006|CZCR_RALME RecName: Full=Transcriptional activator protein CzcR gi|1403127|emb|CAA67086.1| czcR [Cupriavidus metallidurans CH34] gi|56068684|emb|CAI11246.1| response regulator [Cupriavidus metallidurans CH34] gi|93358750|gb|ABF12837.1| regulator , CzcR ,two components regulatory system involved in Cd(II), Zn(II), Co(II) resistance [Cupriavidus metallidurans CH34] Length = 225 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 46/220 (20%), Positives = 95/220 (43%), Gaps = 4/220 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + + G ++ N+ + DV ++ L G Sbjct: 4 LVVEDEPRTAEYLQKGLSESGFVVDIANNGGDGLHMAEETDYDVIILDVML--PGMDGWT 61 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLKV 121 + + IR+ S+ P++ ++ + + F+ G DD + KP E+LAR+ + Sbjct: 62 VIKSIRSKSETPVLFLTALDDVADRVRGFELGADDYLVKPFAFAELLARIRRCLRQSTSK 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + R + + GR L +E +L LM RG+ +++T I S ++G+ Sbjct: 122 ESERLRIADLDIDVLGRRVFRGTTRIELTNQEFSLLHLLMRRRGEVLSRTTIASQVWGV- 180 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + NVV+ I +LR K+ + + + R +GY +D Sbjct: 181 NFDTDTNVVDVAIRRLRSKVDDPFDQKLIHTVRGMGYVLD 220 >gi|312878605|ref|ZP_07738465.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor lactoaceticus 6A] gi|311794618|gb|EFR11087.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor lactoaceticus 6A] Length = 231 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 49/224 (21%), Positives = 93/224 (41%), Gaps = 6/224 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + +G + + D+ ++ L G + Sbjct: 6 ILIIEDEKQIARFIELELKHEGYDVYVCYDGKEGLKKVEEIHPDLILLDIML--PGINGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118 E+ R IR HS VPLI ++ + + DSG DD V KP E + ++ Sbjct: 64 EICRKIRQHSNVPLIMVTAKDDIPDRVMGLDSGADDYVTKPFAIEELLARIRAALRKSKQ 123 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 L + + + + R + ++ L +RE +LEYL+ N+G + + QI ++ Sbjct: 124 LNIIREILTIADLTIDTSKRIVKRADKIIELTKREYDLLEYLVRNKGIVLTRDQILENVW 183 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 G + + NVV+ +I LR K+ + + + R +GY + Sbjct: 184 G-YSYMGDTNVVDVYIRYLRSKVDDGFKTKLIHTVRGVGYKCEE 226 >gi|312792508|ref|YP_004025431.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor kristjanssonii 177R1B] gi|312179648|gb|ADQ39818.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor kristjanssonii 177R1B] Length = 231 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 48/224 (21%), Positives = 93/224 (41%), Gaps = 6/224 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + +G + + D+ ++ L G + Sbjct: 6 ILIIEDEKQIARFIELELKHEGYDVYVCYDGKEGLKKVEEIHPDLILLDIML--PGINGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118 E+ R IR HS VP+I ++ + + DSG DD V KP E + ++ Sbjct: 64 EICRKIRQHSNVPIIMVTAKDDIPDRVMGLDSGADDYVTKPFAIEELLARIRAALRKSKQ 123 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 L + + + + R + ++ L +RE +LEYL+ N+G + + QI ++ Sbjct: 124 LNIIREILTIADLTIDTSKRIVKRADKIIELTKREYDLLEYLVRNKGIVLTRDQILENVW 183 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 G + + NVV+ +I LR K+ + + + R +GY + Sbjct: 184 G-YSYMGDTNVVDVYIRYLRSKVDDGFKTKLIHTVRGVGYKCEE 226 >gi|206969728|ref|ZP_03230682.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|206735416|gb|EDZ52584.1| DNA-binding response regulator [Bacillus cereus AH1134] Length = 230 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 42/228 (18%), Positives = 91/228 (39%), Gaps = 10/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D +++ +G + + E D+ ++ L Sbjct: 5 ILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIM--MPKLDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115 E+ RIIR S VP++ +S + G DD + KP E+ R + Sbjct: 63 EVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 Y + + G + + E G+ L +E IL+ + N+ + K QI++ Sbjct: 123 YSATETIEKMIQIGDLTIDPINFTVEKNGKSLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 ++ + ++NV+ H+ +LR+K+ + + + + +GY ++ Sbjct: 183 LVWNE-EYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLEV 229 >gi|162149578|ref|YP_001604039.1| phosphate regulon transcriptional regulatory protein phoB [Gluconacetobacter diazotrophicus PAl 5] gi|161788155|emb|CAP57760.1| putative phosphate regulon transcriptional regulatory protein phoB [Gluconacetobacter diazotrophicus PAl 5] Length = 239 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 47/221 (21%), Positives = 83/221 (37%), Gaps = 2/221 (0%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++++D + G + E + R D+ ++ L G G V Sbjct: 16 ILVVEDDEALLMMLRYNLEKLGYEVGVAEDGEQALARVAVRRPDLMVLDWMLPGLSGLDV 75 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 R A +P+I ++ + D G DD V KP + AR+ A+ RR Sbjct: 76 CRRLRDQEATRTLPIIMLTARAGEADHIRGLDIGADDYVTKPCSIEALQARIRALMRRAP 135 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + + + E G L E RILE+ + + + ++ + ++ Sbjct: 136 PAEQMLSFADVTLDTVAHRAERNGRQLTLGPTEYRILEFFLRHPRQVFSREDLLQRVW-E 194 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 VE V+ HI +LR L D V + R GY++D Sbjct: 195 RGVHVEPRTVDVHIRRLRLILNGPGEADIVRTVRAAGYALD 235 >gi|28210565|ref|NP_781509.1| transcriptional regulatory protein [Clostridium tetani E88] gi|28203002|gb|AAO35446.1| transcriptional regulatory protein [Clostridium tetani E88] Length = 230 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 43/229 (18%), Positives = 94/229 (41%), Gaps = 11/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ +D +++ + ++ + + + D++ ++ G Sbjct: 3 ILIAEDEQDIRELLGLHLIKEDYNVYEACNGIEALDVFNKNDIDLAILDIM--MPGLDGF 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI-------LARVAA 114 ++ + IR S +P+I I+ + + G DD + KP E+ RV Sbjct: 61 KVLKKIREKSNIPVIFITARGEDENKILGLGLGADDYIVKPFSPMEVVARVKALFRRVGT 120 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + N+ E G + + D G L +E +I+E+LM N+G+ K QI+ Sbjct: 121 YSQNSSKDINKIENGELSLNKDSCTFYKNGNPIELNAKEYKIMEFLMENKGRVHTKKQIY 180 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDW 222 ++G ++ + N + HIS +R K+ + + + R +GY ++ Sbjct: 181 EKVWG-YEYYGDANTIMVHISHIRDKIEDNPKEPIYLKTIRGIGYKLEK 228 >gi|16078390|ref|NP_389208.1| two-component response regulator YkoH [Bacillus subtilis subsp. subtilis str. 168] gi|221309187|ref|ZP_03591034.1| hypothetical protein Bsubs1_07341 [Bacillus subtilis subsp. subtilis str. 168] gi|221313513|ref|ZP_03595318.1| hypothetical protein BsubsN3_07282 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318435|ref|ZP_03599729.1| hypothetical protein BsubsJ_07216 [Bacillus subtilis subsp. subtilis str. JH642] gi|221322709|ref|ZP_03604003.1| hypothetical protein BsubsS_07327 [Bacillus subtilis subsp. subtilis str. SMY] gi|23396975|sp|O34903|YKOG_BACSU RecName: Full=Uncharacterized transcriptional regulatory protein ykoG gi|2632045|emb|CAA05604.1| YkoG [Bacillus subtilis] gi|2633679|emb|CAB13182.1| two-component response regulator [YkoH] [Bacillus subtilis subsp. subtilis str. 168] gi|291483853|dbj|BAI84928.1| hypothetical protein BSNT_02229 [Bacillus subtilis subsp. natto BEST195] Length = 228 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 51/224 (22%), Positives = 95/224 (42%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G S+ ++ + + ++ L G L Sbjct: 6 ILIVEDEEKIARVLQLELEYEGYSVTIKHNGTEGLDAAAEGGYSLVLLDVML--PGLSGL 63 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +R SQ P+I ++ S+ + D G +D V KP E+LAR+ A R+ Sbjct: 64 EVLRRLRKTDSQTPVILLTARDSIPDKVTGLDIGANDYVTKPFEIEELLARIRAALRQNG 123 Query: 121 VSNNRAETGPIRVF----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 T R+ + L RE +L Y++ + + + + QI S+ Sbjct: 124 TKTEDIGTFLTYDDLRVNEKTREVRRGDKEVELTPREFDLLVYMLKHPQQVLTREQILSS 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G FD + NVV+ +I +RKKL + + R +GY+I Sbjct: 184 VWG-FDYIGDTNVVDVYIRYIRKKLDYPYEKQLIHTIRGVGYAI 226 >gi|116625339|ref|YP_827495.1| two component transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116228501|gb|ABJ87210.1| two component transcriptional regulator, winged helix family [Candidatus Solibacter usitatus Ellin6076] Length = 237 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 51/222 (22%), Positives = 98/222 (44%), Gaps = 3/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +LI+D A + +G SL G ++ + L R D+ ++ L G + Sbjct: 9 ILLIEDDADLFSLLKYNLEKEGFSLSGQHTGKGAIELCRQVRPDLILLDIMLPDSDGLDI 68 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R + +P+I ++ S + + G +D V KP RE++AR+ +R Sbjct: 69 CKGIRKDPDLAAIPVIFLTARASETDRIVGLELGANDYVVKPFFVRELIARIKLQFRNQA 128 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 E G + + + G L E R+LE+LM G ++ Q+ +A++G Sbjct: 129 TPARLLEAGGVELDRTSCQVRLNGVPLALTATEFRLLEFLMNRPGVVFSREQLLNAVWGQ 188 Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 D A+ + V+ ++ +LR+K+ + + S R GY+ + Sbjct: 189 -DRAITDRAVDVYVLRLRQKVEKDPASPILIHSVRGFGYTFE 229 >gi|222152735|ref|YP_002561912.1| alkaline phosphatase synthesis transcriptional regulatory protein [Streptococcus uberis 0140J] gi|222113548|emb|CAR41347.1| alkaline phosphatase synthesis transcriptional regulatory protein [Streptococcus uberis 0140J] Length = 240 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 39/230 (16%), Positives = 81/230 (35%), Gaps = 14/230 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L+DD + +G + L S D ++ L + Sbjct: 5 ILLVDDEEHILRLLDYHLKKEGYETDLAEDGRTALKLAESEHYDFILLDIML--PQLDGI 62 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILAR 111 E+ + IR+ P++ +S + + G DD + KP RE Sbjct: 63 EVCKRIRSKGNKTPIMMVSAKGEEFDKVLALELGADDYMTKPFSPRELIARLKAILRRTE 122 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + + ++ + + ++ L +E +L YL+ + + + Sbjct: 123 KTEEEDTTGLPEEYWTINHLVIYPERHEVYKNQKLLNLTPKEFELLLYLVKHPNMTLTRE 182 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 ++ I+G +D E +V+ HI KLR+K+ + + + R GY Sbjct: 183 RLLERIWG-YDFGQETRLVDVHIGKLREKIEDDPKKPVFIKTIRGYGYKF 231 >gi|210613371|ref|ZP_03289691.1| hypothetical protein CLONEX_01898 [Clostridium nexile DSM 1787] gi|210151213|gb|EEA82221.1| hypothetical protein CLONEX_01898 [Clostridium nexile DSM 1787] Length = 233 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 41/230 (17%), Positives = 91/230 (39%), Gaps = 13/230 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + + E + ++ ++ L G Sbjct: 7 ILIVDDDENIAELISLYLTKECFDTMMVHDGEDALSAFDTYAPNLILLDLML--PGIDGY 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R IR+ S P+I +S + + + G DD + KP +E++ARV A+ RR + Sbjct: 65 QVCRDIRSRSNTPIIMLSAKGEVFDKVLGLELGADDYIIKPFDAKELIARVKAVLRRYQP 124 Query: 122 ---------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 I + V +P +E +L +L ++ + + Q Sbjct: 125 GKSDSASDDKGKCVSYPGITINLTNYSVVVDNIQVEMPPKELELLYFLASSPNQVFTREQ 184 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + I+G ++ + V+ HI ++R+K++N + + +GY + Sbjct: 185 LLDQIWG-YEYIGDTRTVDVHIKRIREKIKNHDTWGL-ATVWGIGYKFEV 232 >gi|218236009|ref|YP_002366587.1| DNA-binding response regulator [Bacillus cereus B4264] gi|218163966|gb|ACK63958.1| DNA-binding response regulator [Bacillus cereus B4264] Length = 232 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 40/229 (17%), Positives = 84/229 (36%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +G + ++ E + ++ ++ ++ + Sbjct: 6 ILIVDDDKDIIQFINVNLKQEGFKVFSAHNGEEALEIINNNSIQLAILDIM--MPQMDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARVA 113 EL R IR +P++ +S S + F +G DD + KP E Sbjct: 64 ELCRRIREKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 123 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 +V + + + R + GE L + E IL + A R + +I Sbjct: 124 FNQNAPQVMEKKINIRGLEIDEVSRTVMLYGERINLTKTEYDILHLMAAARNRVFTIEEI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + +++ + N V HI++LR K+ + + +GY I+ Sbjct: 184 YESVWNERAYEIN-NTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIE 231 >gi|325979111|ref|YP_004288827.1| phosphate regulon response regulator PhoB [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|325179039|emb|CBZ49083.1| phosphate regulon response regulator PhoB [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 225 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 43/225 (19%), Positives = 93/225 (41%), Gaps = 6/225 (2%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEK 59 M ++D +++ + G +GF++ E S + D+ ++ L G G Sbjct: 1 MIYCVEDDDDIRELMLYTLKTTGFVAQGFSNAELFWQAIESQKPDLILLDIMLPGSDGLS 60 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYR 117 +LE + + + +P+I + + + D G DD + KP E+++R+ A Sbjct: 61 ILEELKGKMSTADIPVIMATAKGTEFDKVKGLDMGSDDYLVKPFGMMEMISRIKAVLRRS 120 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + G + + + G+ L +E +L LM + + ++ + + Sbjct: 121 QKSQRKQILQVGNLSLDIQNYTVKKDGKDISLTLKEFELLGLLMKYPNRVFTRQELLNQV 180 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +G + E V+ HI LR KL + + + R +GY ++ Sbjct: 181 WGEY-FVGETRTVDVHIGTLRTKLGDASH--LIKTIRGVGYRLEE 222 >gi|293570841|ref|ZP_06681888.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E980] gi|291609109|gb|EFF38384.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E980] Length = 234 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 47/227 (20%), Positives = 94/227 (41%), Gaps = 12/227 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + D +G + E + D+ ++ L LE Sbjct: 5 LVVDDEKPISDIVKFNLAKEGYDVYTAYDGEEALEKVAEVEPDLILLDLML--PKMDGLE 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +R +P+I ++ S + + G DD V KP +RE++ARV A RR + Sbjct: 63 VAREVRKTYDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRGATA 122 Query: 123 NNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 E + + +GE L RE +L YL + G+ + + + Sbjct: 123 TREPEDAAPAELTIGDLTIHPEAYMVTKRGETIELTHREFELLFYLAKHLGQVMTREHLL 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++G +D + V+ + +LR+K+ + + + ++R +GY + Sbjct: 183 QTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPNYLVTRRGVGYYL 228 >gi|291562138|emb|CBL40954.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [butyrate-producing bacterium SS3/4] Length = 229 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 49/227 (21%), Positives = 87/227 (38%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G +E N E S D+ ++ L G Sbjct: 4 ILIVEDEESIAELEKDYLELSGFEVEIENDGEAGLKRAISEEFDLFILDLML--PGVDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 E+ + IR P+I IS + G DD + KP E++ARV A R + Sbjct: 62 EICKKIRETKNTPVIMISAKKDDIDKIRGLGLGADDYITKPFSPSEMVARVKAHLSRYER 121 Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N+ E +++ R V GE +E +L +L N K ++F Sbjct: 122 LIGSGTPVNDIIEIRGLKIDKTARRVYVNGEEKNFTTKEFDLLAFLAQNPNHVFTKEELF 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 S I+ + + + V HI K+R+K+ +++ +GY Sbjct: 182 SKIWDM-ESIGDIATVTVHIKKIREKIEMNTAKPQYIETIWGVGYRF 227 >gi|291295489|ref|YP_003506887.1| two component transcriptional regulator, winged helix family [Meiothermus ruber DSM 1279] gi|290470448|gb|ADD27867.1| two component transcriptional regulator, winged helix family [Meiothermus ruber DSM 1279] Length = 227 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 47/221 (21%), Positives = 90/221 (40%), Gaps = 5/221 (2%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + ++++D + +G E ++ ++ L Sbjct: 8 LILIVEDEKDIARFIELELQAEGYRTEVAYDGITGLSRFRETNPNLVVMDLML--PVMDG 65 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R IR S VP++ ++ ++ ++ D+G DD + KP E+LAR+ A RR+ Sbjct: 66 LEVARRIRKTSNVPIVILTAKDRVEDKVEGLDAGADDYLVKPFSIEELLARIRAHLRRVT 125 Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + +GR+ G +E +LE L + GK ++ +I ++ Sbjct: 126 PAITGEIRVSDLIINLEGREVYRSGRRIEFSNKEFELLELLAKSPGKVFSRFEIEEKVW- 184 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 NVV+ +I LRKKL + + R +GY + Sbjct: 185 -PGYQGGSNVVDVYIGYLRKKLEGAGERRLIHTVRGVGYVL 224 >gi|225388781|ref|ZP_03758505.1| hypothetical protein CLOSTASPAR_02517 [Clostridium asparagiforme DSM 15981] gi|225045163|gb|EEG55409.1| hypothetical protein CLOSTASPAR_02517 [Clostridium asparagiforme DSM 15981] Length = 225 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 47/222 (21%), Positives = 102/222 (45%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++ + G + E + + + D++ + ++ Sbjct: 6 ILVVDDEARMRKLVKDFLTNKGFQVIEAGDGEEAVDIFFADK-DIALVLLDVMMPKMDGW 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IR +SQVP+I ++ + L F GVD+ ++KP + ++ARV AI RR + Sbjct: 65 EVLKTIRKYSQVPVIMLTARSEERDELQGFSLGVDEYISKPFSPKILVARVDAILRRSNM 124 Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + G I + + G L +E +L Y + N+G +++ +I + ++ Sbjct: 125 VSTDTLNVGGICIDKAAHQVTIDGSEIELSYKEFELLTYFVENQGLALSREKILNNVW-N 183 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D + +++H+ KLR K+ K + + + +GY + Sbjct: 184 YDYFGDARTIDTHVKKLRSKMGEKG--EYIKTIWGMGYKFEV 223 >gi|19551981|ref|NP_599983.1| two-component system response regulator [Corynebacterium glutamicum ATCC 13032] gi|62389642|ref|YP_225044.1| response regulator [Corynebacterium glutamicum ATCC 13032] gi|21323520|dbj|BAB98147.1| Two-component system, response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Corynebacterium glutamicum ATCC 13032] gi|41324977|emb|CAF19458.1| Response regulator [Corynebacterium glutamicum ATCC 13032] Length = 226 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 43/220 (19%), Positives = 86/220 (39%), Gaps = 5/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + +G S + D+ ++ L G + Sbjct: 5 ILVVDDDPAISEMLTIVLSAEGFDTVAVTDGALAVETASREQPDLILLDLML--PGMNGI 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R+IR S VP+I ++ + +SG DD VNKP +E++AR+ A R Sbjct: 63 DICRLIRQESSVPIIMLTAKTDTVDVVLGLESGADDYVNKPFKAKELVARIRARLRATVD 122 Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + + G L E +L L + + ++ ++G Sbjct: 123 EPSEIIEVGDLSIDVPAHTVKRNGAEISLTPLEFDLLLELARKPQQVFTREELLGKVWG- 181 Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219 + A + +V H+ +LR K+ + V + R +GY Sbjct: 182 YRHASDTRLVNVHVQRLRAKIEKDPENPQIVLTVRGVGYK 221 >gi|296128578|ref|YP_003635828.1| two component transcriptional regulator, winged helix family [Cellulomonas flavigena DSM 20109] gi|296020393|gb|ADG73629.1| two component transcriptional regulator, winged helix family [Cellulomonas flavigena DSM 20109] Length = 242 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 47/230 (20%), Positives = 89/230 (38%), Gaps = 14/230 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ G + L D+ ++ L Sbjct: 12 LLVVDDEPNIRELLATSLRFAGFEVHAAADGTSALRLARDTHPDLVVLDVML--PDMDGF 69 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R +R + P++ ++ + G DD V KP E++AR+ AI RR Sbjct: 70 SVTRRLREKGEHVPVLFLTARDDTADKVQGLTVGGDDYVTKPFSLEEVVARIRAILRRTA 129 Query: 121 VSNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + D + G L E ++L YLM N + ++K+QI Sbjct: 130 PDEGADSSVLRYADLELDDDTHEVRRAGHPVELSPTEFKLLRYLMLNPQRVLSKSQILDH 189 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG------FDPVDSKRFLGYSI 220 ++ +D + N+VES+IS LR+K+ + ++R +GY + Sbjct: 190 VW-QYDWGGDANIVESYISYLRRKIDQLTDADGRRLPPLIHTRRGVGYLL 238 >gi|154496426|ref|ZP_02035122.1| hypothetical protein BACCAP_00718 [Bacteroides capillosus ATCC 29799] gi|150274509|gb|EDN01586.1| hypothetical protein BACCAP_00718 [Bacteroides capillosus ATCC 29799] Length = 229 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 86/228 (37%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G ++ + + R D++ ++ L Sbjct: 5 ILVVDDEPEIADLVEVYLKSEGFTVFKCGTGADALQWVNRERLDLAILDVML--PDISGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L IR P++ ++ + G DD + KP + E++ARV A RR Sbjct: 63 TLCGEIRREHHFPVLMLTARTEDMDKITGLTIGADDYMTKPFNPLELVARVKAQLRRYTH 122 Query: 122 SNNRAETGPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N + + + + + L E IL L NRG+ ++ ++F Sbjct: 123 YNENDRPVGDIIDFNGLVINRSTHECTLYDKPLNLTPLEFDILWMLCENRGQVISAEKLF 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 +++G N V HI +LR+K+ + + +GY ID Sbjct: 183 ESVWGEKYLDRN-NTVMVHIRRLREKMGEPGRNPRFIKTVWGVGYKID 229 >gi|325066495|ref|ZP_08125168.1| PhoP-like protein [Actinomyces oris K20] Length = 238 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 48/232 (20%), Positives = 94/232 (40%), Gaps = 15/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-------EDVSAIEAFLI 54 +L++D +D DG + + + ++R D+ ++ L Sbjct: 7 ILLVEDEENFRDPLAYGLRRDGFEVVEAEDGQRAVEIFEASRRPGGVGPIDLVLLDLML- 65 Query: 55 GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILA 110 E+ IR S VP+I ++ + + + G DD V KP +R + A Sbjct: 66 -PRLDGTEVCTRIRRSSSVPVIMLTAKDTELDKIVGLEIGADDYVTKPYSYRELLARLKA 124 Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + G +R+ + + V GEV +P RE +LE + + G+ + + Sbjct: 125 VLRRSRAAAPEPEPVLVAGGVRMDVERHEVRVDGEVVAMPLREFELLELFLRHPGRVLTR 184 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 +QI ++G D + ++ HI +LR ++ + + + R LGY +D Sbjct: 185 SQILERLWG-PDYEGDTKTLDVHIKRLRGRIEVDASKPVLITTVRGLGYRLD 235 >gi|293401928|ref|ZP_06646068.1| regulatory protein VanR [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304586|gb|EFE45835.1| regulatory protein VanR [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 229 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 47/228 (20%), Positives = 86/228 (37%), Gaps = 10/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D ++G + F E D++ ++ Sbjct: 5 ILVLDDEKEIADLVTLYLKNEGYQVHEFYDSEDALRFIKDNPVDLAMLDIM--MPKINGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115 E+ +IIR P+I ++ + G DD + KP + E+ R Sbjct: 63 EICKIIREKYTFPVIMLTAKIEDMDKIQGLSLGADDYITKPFNPLEMVARVKAQLRRYKK 122 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 Y K + N + + + +D + +V L E IL YL NRG+ V ++F Sbjct: 123 YNTTKDNVNVIDFKGLIIDNDSHQCTLYDKVLNLTPIEFSILWYLCKNRGRVVPSEELFE 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKK-LRNKLGFDPVDSKRFLGYSIDW 222 A++ N V HI +LR+K + + + +GY I+ Sbjct: 183 AVWKEKYFD-SNNTVMVHIRRLREKMMEPPRNPKFIKTVWGVGYKIEE 229 >gi|225181123|ref|ZP_03734569.1| two component transcriptional regulator, winged helix family [Dethiobacter alkaliphilus AHT 1] gi|225168092|gb|EEG76897.1| two component transcriptional regulator, winged helix family [Dethiobacter alkaliphilus AHT 1] Length = 229 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 37/211 (17%), Positives = 82/211 (38%), Gaps = 9/211 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + G +G + E + + D+ ++ L E Sbjct: 5 LVVDDEKTIVKGLKFNLEKEGYEVLVAFDGEEALRVFNEESPDLIVLDLML--PKLDGFE 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAIY 116 + R IR S VP++ ++ + + G DD V KP + RE+ + R + Sbjct: 63 VCRNIRKTSDVPIVMLTARGEDIDKILGLELGADDYVTKPFNPRELAARVKAIMRRSQSS 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + +++ V+ + L +E +L + ++ G+ ++ ++ Sbjct: 123 SGDSGNLQVIRLQDLQIDLFQHKVRVRDKEVDLTSKEFALLSLMASHPGRVFSREKLLEH 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGF 207 ++G +D + V+ HI LR+K+ G Sbjct: 183 VWG-YDYYGDARTVDVHIRHLREKIEPDPGH 212 >gi|89893100|ref|YP_516587.1| hypothetical protein DSY0354 [Desulfitobacterium hafniense Y51] gi|219666356|ref|YP_002456791.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|89332548|dbj|BAE82143.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219536616|gb|ACL18355.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 229 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 46/227 (20%), Positives = 89/227 (39%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L+DD ++ + ++G ++ + + D+ ++ L G Sbjct: 3 IMLVDDERSIQKAVEYIVRENGYQFCYVDNGLEALEVFAGEAPDLLILDVML--PGLDGF 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + IR+ S VP+I +S + F G DD + KP E+ R+ A+ RR Sbjct: 61 AVCEKIRSFSDVPIIFLSAKGDIVDKGIGFKMGGDDYLVKPFSSMELDFRIKALLRRPHR 120 Query: 122 SNNRAETGPIRVFS-------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + + + GE L +E +L +L NRG+ + Q+ Sbjct: 121 LEDEPNNSDEVLKIGDLELRLNEYEVYSGGEKVELTAKEFEVLAFLAKNRGQVFTREQLL 180 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 I+GL D + N V I ++R+K+ + + + +GY Sbjct: 181 DRIWGL-DFEGDTNTVTVFIRRIREKIEADPAKPQYILTVWGVGYKF 226 >gi|332760677|gb|EGJ90965.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella flexneri 4343-70] Length = 229 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 38/224 (16%), Positives = 93/224 (41%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A +++ + +G + + D+ ++ L G + Sbjct: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWML--PGGSGI 62 Query: 62 ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 + + ++ S +P++ ++ + + ++G DD + KP +E++AR+ A+ RR Sbjct: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + + + E + E ++L + M + + ++ Q+ + Sbjct: 123 ISPMAVEEVIKMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNH 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + VE+ V+ HI +LRK L V + R GY Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225 >gi|238060857|ref|ZP_04605566.1| winged helix family two-component system transcriptional regulator [Micromonospora sp. ATCC 39149] gi|237882668|gb|EEP71496.1| winged helix family two-component system transcriptional regulator [Micromonospora sp. ATCC 39149] Length = 233 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 47/223 (21%), Positives = 93/223 (41%), Gaps = 8/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + A G + S R D+ ++ L Sbjct: 10 LLVVEDDPNILELLSASLRFAGFDVATATSGSAALNAAKDHRPDLVVLDVML--PDLDGF 67 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R++R + P++ ++ + + G DD V KP E+ AR+ A+ RR Sbjct: 68 EVIRMLREGGTRTPVVFLTARDATDDKIRGLTLGGDDYVTKPFSLEELTARIRAVLRRTA 127 Query: 121 VSNNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + + G+ L E ++L YLM N + ++K QI + Sbjct: 128 NGDQAPSRLTFADLELDEETHEVHRAGQRVQLSPTEFKLLRYLMLNANRVLSKAQILDHV 187 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + +D ++N+VES+IS LR+K+ + + + R +GY + Sbjct: 188 W-NYDFRGDDNIVESYISYLRRKV-DNTQPRLIHTLRGVGYVL 228 >gi|153952685|ref|YP_001393450.1| VanR [Clostridium kluyveri DSM 555] gi|146345566|gb|EDK32102.1| VanR [Clostridium kluyveri DSM 555] Length = 232 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 38/230 (16%), Positives = 84/230 (36%), Gaps = 11/230 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D ++G ++ + + S + +++ ++ L Sbjct: 5 ILVVDDEQPIADLIEVYLKNEGFTIYKSYNGQDAFRCVESEQLELAILDVML--PDIDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH--------REILARVA 113 L + IR + P+I ++ + G DD + KP ++ Sbjct: 63 TLCQRIRENHNFPVIMLTAKEEEIDKITGLTLGADDYITKPFRPLELVARVKAQLRRFTK 122 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + + D + + + L +E IL L +NRG+ V+ ++ Sbjct: 123 YNSVEPNQEEHLIAFSGLILDMDTHECTLNEKKISLTPKEFSILWVLCSNRGRVVSSEEL 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDW 222 F ++G N V HI LR+K+ + + + +GY I+ Sbjct: 183 FHEVWGDKYFTNSNNTVMVHIRHLREKMHGSAEHPKYIKTVWGVGYKIEK 232 >gi|329769297|ref|ZP_08260713.1| transcriptional regulatory protein walR [Gemella sanguinis M325] gi|328839100|gb|EGF88685.1| transcriptional regulatory protein walR [Gemella sanguinis M325] Length = 233 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 45/226 (19%), Positives = 93/226 (41%), Gaps = 12/226 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +G + N E L S D+ ++ L K + Sbjct: 6 ILVVDDEEPIAKILDFNLRKEGYDVIVANDGEKAVKLAFSEDPDLILLDLMLPEK--DGM 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL--------ARVA 113 E+ R +RA +P+I ++ S + + G DD V KP RE++ Sbjct: 64 EVCREVRAQKNIPIIMLTAKNSEIDKVLGLEFGADDYVTKPFSTRELMARVKVNLRRVAK 123 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + + I ++ + + GE L RRE + YL +RG+ + + + Sbjct: 124 QTEVVEEKNTSEVVIKDIVIYPEAYIIKKNGEEVDLTRREFDLFYYLAQHRGQVLTRENL 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218 ++G +D + V+ + +LR+K+ + + + ++R +GY Sbjct: 184 LQTVWG-YDYFGDVRTVDVTVRRLREKVETDSSQPEYIMTRRGVGY 228 >gi|302536438|ref|ZP_07288780.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. C] gi|302445333|gb|EFL17149.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. C] Length = 225 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 49/222 (22%), Positives = 92/222 (41%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D ++ G + + E L R D+ ++ L G Sbjct: 4 LLLIEDDDAIRTALELSLTRQGHRVATAATGEDGLKLLREQRPDLIVLDVML--PGIDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR Q+P+I ++ + +SG DD V KP+ R + AR+ A+ RR + Sbjct: 62 EVCRRIRRTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGER 121 Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + T + GE L E R+L L G+ +++ Q+ ++ Sbjct: 122 EASDSATFGTLVIDRAAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVW-E 180 Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 D + +V++ + +LR K+ + + R +GY +D Sbjct: 181 HDYLGDSRLVDACVQRLRAKVEEVPSSPTLIRTVRGVGYRLD 222 >gi|21283366|ref|NP_646454.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus MW2] gi|49486519|ref|YP_043740.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus MSSA476] gi|297207594|ref|ZP_06924029.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300911675|ref|ZP_07129119.1| response regulator [Staphylococcus aureus subsp. aureus TCH70] gi|21204806|dbj|BAB95502.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus MW2] gi|49244962|emb|CAG43423.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus MSSA476] gi|296887611|gb|EFH26509.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300887096|gb|EFK82297.1| response regulator [Staphylococcus aureus subsp. aureus TCH70] Length = 234 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 41/227 (18%), Positives = 97/227 (42%), Gaps = 11/227 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + G + + S + D+ ++ L + ++ Sbjct: 6 LVVDDEHSIVTLLKYNLETAGYEVVVAFDGDEALEKVESEQPDLIILDVML--PKKDGID 63 Query: 63 LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115 + + +R + VP++ ++ + + G DD + KP RE+ + R + Sbjct: 64 VCKTVRTNKNLVPILMLTAKNDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRRSQF 123 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + ++ ++ G IR+ D + E+ L +E +L YL+ +G+ + + + + Sbjct: 124 VKEVEEVDDDITIGSIRIRPDYFEVYKHNELLELTPKEFELLLYLIERQGRVITREHMLN 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 ++ ++ A + +V+ HIS LR KL + + + R LGY ++ Sbjct: 184 TVW-NYEFAGDSRIVDVHISHLRDKLEDNPKKPQLIKTVRGLGYKLE 229 >gi|300790141|ref|YP_003770432.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299799655|gb|ADJ50030.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 230 Score = 148 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 42/226 (18%), Positives = 91/226 (40%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V++ +G ++ + + R D ++ L Sbjct: 3 ILVVDDDRAVRESLRRSLEFNGYQVQLASDGAQALEAIIADRPDAMVLDVM--MPRLDGL 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +R+ P++ ++ ++ + D+G DD + KP E+LAR+ A+ RR Sbjct: 61 EVARRLRSTGDDLPILVLTARDTVSDRVSGLDAGADDYLPKPFALEELLARLRALLRRAI 120 Query: 121 VSNNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + + R+ G L R E +LE ++ + + +I Sbjct: 121 PEGQNGQASEALAFADLTLDPGTREVRRGGREISLTRTEFALLELFLSYPKHVLTRGRIL 180 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G +D N +E ++ LR+K + + + R +GY + Sbjct: 181 EEVWG-YDFPTSGNALEVYVGYLRRKTEAEGEPRLIHTVRGVGYVL 225 >gi|296187359|ref|ZP_06855754.1| putative regulatory protein VanR [Clostridium carboxidivorans P7] gi|296047881|gb|EFG87320.1| putative regulatory protein VanR [Clostridium carboxidivorans P7] Length = 229 Score = 148 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 43/227 (18%), Positives = 92/227 (40%), Gaps = 8/227 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ + F +G ++E + + + + + ++ Sbjct: 5 ILIVDDDRDIREMLVNYFSKEGYAVEQACNGDEGLKVLKAKSFSLILLDVM--MPKMDGY 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + +R S +P+I ++ + F +G DD + KP E+ RV AI +R K Sbjct: 63 TMLCKLRESSNIPVILLTAKDQQMDKIKGFINGCDDYIVKPFDFTELSLRVMAILKRTKS 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFP----LPRRERRILEYLMANRGKRVAKTQIFSAI 177 +NN + + E + L +E IL L N+G+ + ++ + Sbjct: 123 NNNPCQDIIKIKDIEINTSEYTVKKDNLEIILTPKEYEILYTLAINKGRVYSTKMLYELL 182 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSIDWN 223 + +N V HI LR+KL + + + + +GY I+ + Sbjct: 183 W-KDTFMQNDNTVTMHIKNLREKLGDSVKQGKYIKTIWGVGYKIEKD 228 >gi|167761616|ref|ZP_02433743.1| hypothetical protein CLOSCI_04028 [Clostridium scindens ATCC 35704] gi|167660759|gb|EDS04889.1| hypothetical protein CLOSCI_04028 [Clostridium scindens ATCC 35704] Length = 226 Score = 148 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 38/223 (17%), Positives = 87/223 (39%), Gaps = 6/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + ++ G +G + + + D++ I ++ Sbjct: 6 ILIVDDESRMRKLVKDFLGREGYLVREAGDGMEALEIFYEEK-DIALIILDVMMPRMDGW 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV--NKPIHHREILARVAAIYRRL 119 + R IR SQVP+I ++ L F+ GVD+ + Sbjct: 65 QTCREIRQSSQVPIIMLTARSEEHDELQGFELGVDEYISKPFSPKILVARVEAILRRSHA 124 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + + G I + ++ L +E +L Y + N+G +++ +I + ++ Sbjct: 125 IGTGDVIDAGGIIIDKAAHQVKIDDTEIDLSFKEFELLAYFVENQGIALSREKILNNVW- 183 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D + +++H+ KLR KL +K + + +GY + Sbjct: 184 NYDYFGDARTIDTHVKKLRSKLGDKGN--YIKTIWGMGYKFEV 224 >gi|311898335|dbj|BAJ30743.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 244 Score = 148 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 41/227 (18%), Positives = 85/227 (37%), Gaps = 15/227 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + + A G +G + + + + D+ ++ L G LE Sbjct: 21 LVVEDEPTIAESIAARLGAEGFKVAVAHDGPGAVDGFHTWQPDLVVLDIML--PGFDGLE 78 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARVAA 114 + R I+A VP++ ++ L G DD + KP RE + A Sbjct: 79 VCRRIQAQRPVPVLMLTARDDETDLLVGLGVGADDYMTKPFSMRELAARVNVLLRRVERA 138 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + G + + R + L E +L L A + + Q+ Sbjct: 139 QQAARTPALGSLRFGELEIDHVQRRVRLGSGDVHLTPTEFDLLACLAAQPRAVLTREQLL 198 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + ++ D + V+SH+ LR+K+ G + + +GY+++ Sbjct: 199 AEVWDWTDASG-TRTVDSHVKALRRKI----GASWIRTVHGVGYALE 240 >gi|159036559|ref|YP_001535812.1| two component transcriptional regulator [Salinispora arenicola CNS-205] gi|157915394|gb|ABV96821.1| two component transcriptional regulator, winged helix family [Salinispora arenicola CNS-205] Length = 229 Score = 148 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 44/223 (19%), Positives = 87/223 (39%), Gaps = 9/223 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + + +G E +R D+ ++ L G ++ Sbjct: 6 LVVDDDPALAEMLGIVLRSEGFLPSFVADGERALAAFRESRPDIVLLDLML--PGMSGID 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR S VP++ ++ + +SG DD V KP +E++AR+ A RR + + Sbjct: 64 VARSIRGESGVPIVMLTAKSDTVDVVLGLESGADDYVVKPFKPKELVARMRARLRRGEDA 123 Query: 123 NNR-----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 I + GE L E +L L + + + + Sbjct: 124 APELLTIGPTGNQITIDVPAHTVSRNGEEVKLTPLEFDLLVALARKPRQVFTREVLLEQV 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219 +G + A + +V H+ +LR K+ + + + R +GY Sbjct: 184 WG-YRHAADTRLVNVHVQRLRAKIEPDPERPEIILTVRGVGYK 225 >gi|82775697|ref|YP_402044.1| transcriptional regulator PhoB [Shigella dysenteriae Sd197] gi|309786981|ref|ZP_07681593.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella dysenteriae 1617] gi|1172482|sp|P45606|PHOB_SHIDY RecName: Full=Phosphate regulon transcriptional regulatory protein phoB gi|152773|gb|AAA26535.1| phosphate regulatory protein phoB [Shigella dysenteriae] gi|81239845|gb|ABB60555.1| positive response regulator for pho regulon [Shigella dysenteriae Sd197] gi|308924559|gb|EFP70054.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella dysenteriae 1617] Length = 229 Score = 148 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 39/224 (17%), Positives = 93/224 (41%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A +++ + +G + + D+ ++ L G + Sbjct: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWML--PGGSGI 62 Query: 62 ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 + + ++ S +P++ ++ + + ++G DD + KP +E++AR+ A+ RR Sbjct: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + E + + E + E ++L + M + + ++ Q+ + Sbjct: 123 ISPMAVEEVIEMQGLSLDPTSHRVMTGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNH 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + VE+ V+ HI +LRK L V + R GY Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225 >gi|229165243|ref|ZP_04293033.1| Two-component response regulator [Bacillus cereus AH621] gi|228618238|gb|EEK75273.1| Two-component response regulator [Bacillus cereus AH621] Length = 233 Score = 148 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 45/230 (19%), Positives = 89/230 (38%), Gaps = 11/230 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ ++G + E + + ++ + Sbjct: 6 ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRILEENEVHLVVLDIM--MPKVDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + +R ++P+I +S + +G DD V KP + E++AR+ + RR Sbjct: 64 HMCMKVREAKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMK 123 Query: 122 SNNRAETG-------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N A +++ V GE L RE ILE L+ N G + QI+ Sbjct: 124 MNGFAIQNEDELEIGEMKINISTHTVIVDGEEVKLTPREFSILELLVRNPGMVFSAEQIY 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDWN 223 ++ +N V HI K+R+K+ + + +GY I+ + Sbjct: 184 EKVWNERSFQ-SDNTVMVHIRKVREKIEENPRKPIYIKTVWGVGYKIEKD 232 >gi|154500201|ref|ZP_02038239.1| hypothetical protein BACCAP_03865 [Bacteroides capillosus ATCC 29799] gi|150270933|gb|EDM98207.1| hypothetical protein BACCAP_03865 [Bacteroides capillosus ATCC 29799] Length = 233 Score = 148 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 41/227 (18%), Positives = 84/227 (37%), Gaps = 9/227 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + D G S D+ ++ L G Sbjct: 6 ILVVEDDQDINRLLCKILEDGGYCCRPAFSGSEAMLWAGQYDYDLILLDLML--PGLTGE 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115 E +R +P+I +S L++ ++ G DD + KP + E+ R Sbjct: 64 EFIAELRKSRTMPIIVLSAKAGLESRVNVLKLGADDFIPKPFDNAEVLARVEAQLRRYRQ 123 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + G + + + G+ + RE IL LM+ K + Q++ Sbjct: 124 FSSPAGEKHVLTWGDLILDKESVSVTAAGKDVTVTAREFEILALLMSYPKKVFTREQLYE 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 ++G + ++N V HIS LR KL + + + +G+ ++ Sbjct: 184 QVWG-GEYFGDDNTVNVHISNLRSKLAKVSSAEYIKTVWGIGFKMNE 229 >gi|126650762|ref|ZP_01722978.1| sensor histidine kinase [Bacillus sp. B14905] gi|126592427|gb|EAZ86445.1| sensor histidine kinase [Bacillus sp. B14905] Length = 713 Score = 148 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 41/228 (17%), Positives = 90/228 (39%), Gaps = 10/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D + + + ++ ++ + D+ ++ L G Sbjct: 489 ILLIEDEVSIAELQRDYLEINDFMVDIQHNGDEGLKQALHGDYDLIILDIML--PGMNGF 546 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115 E+ + IRA + +P++ +S + G DD + KP E+ Sbjct: 547 EICKQIRAVNNIPILFVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHLSRYER 606 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 K +NN I + + R V GE +E +L + + + + ++K Q++ Sbjct: 607 LASNKPTNNMLSIHGITIDTSARKVFVNGEEVAFTTKEFDLLVFFVKHPNQVLSKEQLYE 666 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 +G ++ A + + V HI KLR+K+ + +++ GY ++ Sbjct: 667 RNWG-YESAADVSTVTVHIRKLREKIERDPAQPKFLETVWGAGYRLNV 713 >gi|91778717|ref|YP_553925.1| two component heavy metal response transcriptional regulator [Burkholderia xenovorans LB400] gi|91691377|gb|ABE34575.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia xenovorans LB400] Length = 225 Score = 148 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 46/221 (20%), Positives = 93/221 (42%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + G +++ N L DV ++ L G Sbjct: 3 ILVIEDELKTAAYLKKGLEESGYAVDVANDGPQGLILALEEEYDVIVLDVML--PGMDGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120 + + +R P++ ++ + + + G DD + KP E+LARV R Sbjct: 61 GVVKTLRTTRTTPVLFLTARDDVDDRVRGLELGADDYLVKPFAFVELLARVRTLARRGPP 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + G + + + R + G L RE +L+ L +G+ +++TQI S ++ + Sbjct: 121 RESELIKVGDLEMDVNRRRVKRGGTRIDLTPREFSLLQLLARRQGEVLSRTQIASYVWDM 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + NVVE I +LR K+ + + + R +GY ++ Sbjct: 181 -NFDSDTNVVEVAIRRLRTKIDDNFSVKLIHTVRGVGYVLE 220 >gi|47569985|ref|ZP_00240648.1| DNA-binding response regulator [Bacillus cereus G9241] gi|47553333|gb|EAL11721.1| DNA-binding response regulator [Bacillus cereus G9241] Length = 254 Score = 148 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 35/222 (15%), Positives = 93/222 (41%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ +G + D+ ++ Sbjct: 34 ILIVDDDPHIRELVSVFLEREGFQTYDAIDGLDALQKIDEVKVDMVILDIM--MPNMDGF 91 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ +R + +P++ ++ + F G DD + KP E++ RV A+ +R ++ Sbjct: 92 DVCFELRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 151 Query: 122 SNNRAETGPIR-VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + +++ + + + + LP +E +L L + G+ ++ Q+ ++G Sbjct: 152 TVSQSIQVGNVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG- 210 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D E ++ H+++LR+K + + + + R LGY ++ Sbjct: 211 YDFEGNERTLDVHMNRLREKFQEEKSRFSIKTIRGLGYRLEV 252 >gi|295705558|ref|YP_003598633.1| two-component response regulator [Bacillus megaterium DSM 319] gi|294803217|gb|ADF40283.1| two-component response regulator [Bacillus megaterium DSM 319] Length = 225 Score = 148 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 44/222 (19%), Positives = 85/222 (38%), Gaps = 8/222 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L+DD + D+G + + D+ ++ G Sbjct: 5 ILLVDDEKDIISFMKDALQDEGYEVVFAYEGQEALTKLKIN-PDLIVLDVM--MPGMDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L +IR P+I +S + Q + G DD + KP +E+ AR+ A RR + Sbjct: 62 ALCELIRKSISCPIIFLSAKQTEQDRVKGLLVGGDDYLVKPFSMKELKARIYAHLRREQR 121 Query: 122 SNNRAETGPIR----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 N+ + + +G E P RE I+ +L + G+ + Q++ + Sbjct: 122 INSNSYNRLHFGELTIDLNGYQILHNNEAIPFTSREFEIVHFLALHPGQVFTREQLYEKV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 +G +D + + + H+ K+R KL + + +GY Sbjct: 182 WG-YDAEGDSSTITEHVKKIRAKLLKYDETPYISTVWGIGYK 222 >gi|239626813|ref|ZP_04669844.1| two-component response regulator [Clostridiales bacterium 1_7_47_FAA] gi|239516959|gb|EEQ56825.1| two-component response regulator [Clostridiales bacterium 1_7_47FAA] Length = 243 Score = 148 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 50/228 (21%), Positives = 84/228 (36%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 + DD +++ L +G + + E + D+ ++ G Sbjct: 19 ILFADDDPEIREVVRILLESEGYQVVEAENGEQA-ASMADDTFDLIILDVM--MPGRNGF 75 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 IR P++ ++ F +G DD ++KP + E+ ARV A+ RR + Sbjct: 76 SACAEIRRRLNTPILFLTARTQDSDKTMGFGAGGDDYLSKPFSYAELAARVKAMIRRYHI 135 Query: 122 SNNRAETGPI-------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + E G + + G L E RIL L +NRGK I+ Sbjct: 136 YKGKEEDGEESIAVKDLVIQKSFNEVMKNGGEILLTDLEYRILLLLASNRGKLFTIENIY 195 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 +++G N V HI LRKKL + + + GY I+ Sbjct: 196 ESVWGEAYYYSANNTVMVHIRNLRKKLEADPKNPKYIVNVWGKGYRIE 243 >gi|229152733|ref|ZP_04280917.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus m1550] gi|228630711|gb|EEK87356.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus m1550] Length = 230 Score = 148 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 43/228 (18%), Positives = 92/228 (40%), Gaps = 10/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D +++ +G + + E D+ ++ L Sbjct: 5 ILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIM--MPKLDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115 E+ RIIR S VP++ +S + G DD + KP E+ R + Sbjct: 63 EVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 Y + + + G + + E G+ L +E IL+ + N+ + K QI++ Sbjct: 123 YSATETTEKMIQIGDLTIDPINFTVEKNGKPLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 I+ + ++NV+ H+ +LR+K+ + + + + +GY ++ Sbjct: 183 LIWNE-EYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLEV 229 >gi|226325419|ref|ZP_03800937.1| hypothetical protein COPCOM_03224 [Coprococcus comes ATCC 27758] gi|225206162|gb|EEG88516.1| hypothetical protein COPCOM_03224 [Coprococcus comes ATCC 27758] Length = 235 Score = 148 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 46/223 (20%), Positives = 101/223 (45%), Gaps = 6/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + ++ +G ++ + + D++ I ++ Sbjct: 15 ILVVDDESRMRKLVRDFLEREGYAVLEAGDGMEAMDIFYEEK-DIALIILDVMMPHMDGW 73 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R IR S+VP+I ++ + L F+ GVD+ ++KP + ++ARV AI RR Sbjct: 74 QTCREIRKESKVPIIMLTARSEERDELQGFELGVDEYISKPFSPKILVARVTAILRRTNA 133 Query: 122 SNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + I + ++ G+ L +E +L Y + N+G +++ +I + ++ Sbjct: 134 LASDDLLHADGIEIDKAAHMVKIDGKPIELSYKEFELLTYFVENQGIALSREKILNNVW- 192 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D + +++H+ KLR KL +K D + + +GY + Sbjct: 193 NYDYFGDARTIDTHVKKLRSKLGDKG--DYIKTIWGMGYKFEV 233 >gi|88858377|ref|ZP_01133019.1| phosphate regulon transcriptional regulatory protein phoB [Pseudoalteromonas tunicata D2] gi|88819994|gb|EAR29807.1| phosphate regulon transcriptional regulatory protein phoB [Pseudoalteromonas tunicata D2] Length = 229 Score = 148 bits (373), Expect = 5e-34, Method: Composition-based stats. Identities = 42/224 (18%), Positives = 92/224 (41%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A +++ + + +G + D+ ++ L G + Sbjct: 5 ILVVDDEAPIREMLVFVLEQNGFQAIEAEDYDSAIASLMEPYPDMILLDWML--PGGSGI 62 Query: 62 ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 ++ + I+ +P+I ++ + + + G DD V KP +E++AR+ A+ RR Sbjct: 63 QIAKKIKQSEYTRHIPIIMLTARGEEEDKVKGLEVGADDYVTKPFSPKELMARIKAVIRR 122 Query: 119 LKVSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + ++ R+ G + E R+L + M + + ++ Q+ Sbjct: 123 VSPTSLEEAIEVHGLRLDPISHRVTSAGSELDMGPTEFRLLHFFMTHPERVYSREQLLDH 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + VE+ V+ HI +LRK + V + R GY Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKAIAPMGHDKLVQTVRGSGYRF 225 >gi|328885015|emb|CCA58254.1| putative two-component system response regulator [Streptomyces venezuelae ATCC 10712] Length = 245 Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats. Identities = 47/227 (20%), Positives = 95/227 (41%), Gaps = 15/227 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D A + + A +G ++ + + D+ ++ L G LE Sbjct: 22 LVVEDDATIVEAISARLRAEGFLVQTATDGPAAVDAAEAWQPDLMVLDVML--PGFDGLE 79 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R ++A VP++ ++ L G DD + KP RE+ ARV + RR++ + Sbjct: 80 VCRRVQAQRPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRVERA 139 Query: 123 NNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 A T + R V+ E L E +L L +++ Q+ Sbjct: 140 ALAAVTPRSGILRLGELEIDHAQRRVRVRSEDVHLTPTEFDLLVCLAGTPRAVLSREQLL 199 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + ++ D + V+SHI LR+K+ G + + + +GY+++ Sbjct: 200 AEVWDWADASG-TRTVDSHIKALRRKI----GAERIRTVHGVGYALE 241 >gi|322374704|ref|ZP_08049218.1| DNA-binding response regulator VncR [Streptococcus sp. C300] gi|321280204|gb|EFX57243.1| DNA-binding response regulator VncR [Streptococcus sp. C300] Length = 218 Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats. Identities = 49/220 (22%), Positives = 101/220 (45%), Gaps = 6/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++++G D G + L+ + +V+ + + L Sbjct: 3 ILIVEDEEMIREGISDYLTDCGYETIEAADGQEA--LEKFSSYEVALVLLDIQMPKLNGL 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ IR SQVP++ ++ + + + F S D + KP + RV AI++R Sbjct: 61 EVLAEIRKTSQVPVLMLTAFQDEEYKMSAFASLADGYLEKPFSLSLLKVRVDAIFKRYYD 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + +V + + G+ + +E IL+YL+ N G+ + ++QI A++ Sbjct: 121 TGRVFSYKDTKVDFESYSASLAGQEVAINAKELEILDYLVKNEGRALTRSQIIDAVWKAT 180 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 DE + V++ +I +LRKKL D + + R +GY ++ Sbjct: 181 DEVPFDRVIDVYIKELRKKLDL----DCILTVRNVGYKLE 216 >gi|49478722|ref|YP_038715.1| DNA-binding response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52140835|ref|YP_085995.1| DNA-binding response regulator [Bacillus cereus E33L] gi|49330278|gb|AAT60924.1| DNA-binding response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51974304|gb|AAU15854.1| DNA-binding response regulator [Bacillus cereus E33L] Length = 233 Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats. Identities = 47/229 (20%), Positives = 89/229 (38%), Gaps = 11/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D + + + ++ +S E + D+ ++ L Sbjct: 8 ILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDYDLIILDIML--PKMNGF 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IRA +P++ +S + G DD + KP E++ARV A R + Sbjct: 66 EICKQIRAIKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 125 Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + I + R + E +E +L + + N + + K Q+F Sbjct: 126 LLGNVSKQRDTLYIHGISIDQRARKVFINNEEVAFTTKEFDLLTFFVTNPNQVLNKEQLF 185 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 I+GL D A + V HI KLR+K+ + +++ GY + Sbjct: 186 ERIWGL-DSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRFNV 233 >gi|83952004|ref|ZP_00960736.1| phosphate regulon transcriptional regulatory protein PhoB [Roseovarius nubinhibens ISM] gi|83837010|gb|EAP76307.1| phosphate regulon transcriptional regulatory protein PhoB [Roseovarius nubinhibens ISM] Length = 221 Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats. Identities = 54/223 (24%), Positives = 95/223 (42%), Gaps = 8/223 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L++D +D DG + + E L D+ ++ L +E Sbjct: 1 MLVEDEPAQRDILTYNLEADGFEVAAAENGEEALLLVDEVSPDIIVLDWML--PNVSGIE 58 Query: 63 LPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 + R +++ S P+I +S + ++G DD V KP E++ARV A RR Sbjct: 59 VCRQLKSRSDTRGVPIIMLSARSEEVDRVRGLETGADDYVVKPYSVAELMARVRAQLRRT 118 Query: 120 KVSNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + R E I + ++ + L E R+L M G+ ++ Q+ + Sbjct: 119 RPAAMGARLEFDDIVLDAETHRVTRADQSLKLGPTEFRLLSTFMEKPGRVWSREQLLDRV 178 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G D V+ V+ HI +LRK L G DP+ + R GY++ Sbjct: 179 WGR-DIYVDTRTVDVHIGRLRKALCQYGGDDPLRTVRGAGYAL 220 >gi|315647246|ref|ZP_07900359.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] gi|315277448|gb|EFU40777.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] Length = 232 Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats. Identities = 50/229 (21%), Positives = 87/229 (37%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + + D ++ + E L S + D+ ++ L + Sbjct: 5 ILLVEDDHDIHQLIESQLQQDHYHVDSAHDGEEAVALFHSGKFDLILLDLML--PKINGM 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112 +L R R S+VP++ IS S G DD ++KP E A + Sbjct: 63 DLLRHFRESSKVPVLIISAKGSDLDKAMGLGFGADDYISKPFSMIELTARVQAAIRRATL 122 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 A + + +V+G PL +E IL+ LM N + K Q Sbjct: 123 YAETDSKSAEPPVISFKDLILDLHSFSVKVRGHHVPLTSKEFHILKLLMTNHSRVFTKEQ 182 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 I+ I+ D ENV+ HI +LR+K+ + + +GY + Sbjct: 183 IYQFIW-EDDYYGNENVINVHIRRLREKIEEDPSTPQYIRTIWGIGYKM 230 >gi|238758863|ref|ZP_04620036.1| Transcriptional regulatory protein baeR [Yersinia aldovae ATCC 35236] gi|238702971|gb|EEP95515.1| Transcriptional regulatory protein baeR [Yersinia aldovae ATCC 35236] Length = 239 Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats. Identities = 45/221 (20%), Positives = 87/221 (39%), Gaps = 5/221 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + + G + + + ++ L G + Sbjct: 15 LIVEDEPKLGQLLVDYLQAAGYRTQWLTNGLEAVATVRHTPPAIILLDLML--PGSDGIT 72 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR S VP++ ++ L + G DD + KP RE++ARV I RR + Sbjct: 73 ICREIRRFSDVPIMMVTAKTEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCHQA 132 Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 +A + QG + L E R+L+ L G ++ Q+ + +Y + Sbjct: 133 REQATDSAPLIIDESRFQASYQGHLLELTPAEFRLLKILATQPGHVFSREQLLNNLYDDY 192 Query: 182 DEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 V + ++SHI LR+KL + + + +GY + Sbjct: 193 -RVVTDRTIDSHIKNLRRKLESLDGDKPFIRAVYGMGYRWE 232 >gi|11465824|ref|NP_053968.1| Ycf27 [Porphyra purpurea] gi|1723330|sp|P51358|YCF27_PORPU RecName: Full=Probable transcriptional regulator ycf27; AltName: Full=OmpR-like protein gi|1276824|gb|AAC08244.1| hypothetical chloroplast ORF 27 [Porphyra purpurea] Length = 243 Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats. Identities = 44/229 (19%), Positives = 90/229 (39%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++ G + ++ E + + ++ Sbjct: 8 ILVVDDEASIRRILETRLTIIGYEVITASNGEEALIIFRKEYPSLVVLDVM--MPKLDGY 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-------- 113 + + +R S VP+I ++ + + + G DD V KP +E+ AR+ Sbjct: 66 GVCQELRKESDVPIIMLTALGEVCDRITGLEIGADDYVVKPFSPKELEARIRSVLRRADK 125 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 ++ G +++ ++ R E L E +LE L++ G+ ++ I Sbjct: 126 ITTNLGVPNSGIISIGFLKIDTNKRQVYKNNERVRLTGMEFSLLELLVSKAGEPFSRASI 185 Query: 174 FSAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 ++G + V+ VV+ HIS+LR KL + D + + R GY Sbjct: 186 LQEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPDLILTARGTGYLF 234 >gi|330470318|ref|YP_004408061.1| two component transcriptional regulator [Verrucosispora maris AB-18-032] gi|328813289|gb|AEB47461.1| two component transcriptional regulator [Verrucosispora maris AB-18-032] Length = 227 Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats. Identities = 52/225 (23%), Positives = 96/225 (42%), Gaps = 9/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D D + +G + + A D+ ++ L E Sbjct: 5 LVVEDEESFSDALSYMLRKEGFEVSVAATGTSALTEFDRAGADIVLLDLML--PEMSGTE 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +R S VP+I ++ S + + G DD V KP RE++AR+ A+ RR Sbjct: 63 VCRQLRQRSHVPIIMVTARDSEIDKVVGLEIGADDYVTKPYSPRELVARIRAVLRRQSPE 122 Query: 123 NNRAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + T GP+R+ + V G LP +E +LE L+ N G+ + + Q+ + Sbjct: 123 TVESGTATLAAGPVRMDIERHVVTVDGSTVQLPLKEFELLELLLRNAGRVLTRGQLIDRV 182 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 +G D + ++ H+ +LR K+ + + R LGY + Sbjct: 183 WGA-DYVGDTKTLDVHVKRLRSKIEPEPSSPRHIVTVRGLGYKFE 226 >gi|219853357|ref|YP_002470479.1| hypothetical protein CKR_0014 [Clostridium kluyveri NBRC 12016] gi|219567081|dbj|BAH05065.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 242 Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats. Identities = 38/230 (16%), Positives = 84/230 (36%), Gaps = 11/230 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D ++G ++ + + S + +++ ++ L Sbjct: 15 ILVVDDEQPIADLIEVYLKNEGFTIYKSYNGQDAFRCVESEQLELAILDVML--PDIDGF 72 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH--------REILARVA 113 L + IR + P+I ++ + G DD + KP ++ Sbjct: 73 TLCQRIRENHNFPVIMLTAKEEEIDKITGLTLGADDYITKPFRPLELVARVKAQLRRFTK 132 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + + D + + + L +E IL L +NRG+ V+ ++ Sbjct: 133 YNSVEPNQEEHLIAFSGLILDMDTHECTLNEKKISLTPKEFSILWVLCSNRGRVVSSEEL 192 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDW 222 F ++G N V HI LR+K+ + + + +GY I+ Sbjct: 193 FHEVWGDKYFTNSNNTVMVHIRHLREKMHGSAEHPKYIKTVWGVGYKIEK 242 >gi|156936234|ref|YP_001440151.1| transcriptional regulatory protein YedW [Cronobacter sakazakii ATCC BAA-894] gi|156534488|gb|ABU79314.1| hypothetical protein ESA_04133 [Cronobacter sakazakii ATCC BAA-894] Length = 226 Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats. Identities = 47/220 (21%), Positives = 95/220 (43%), Gaps = 3/220 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D + + G+ ++ L + ++ L G Sbjct: 3 LLLIEDNDKTRAWLEKGLREAGLVVDTVADGRDGLHLALEQDYALIILDIML--PGLDGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R +R P++ ++ ++ + + G DD + KP E+LARV A RR Sbjct: 61 QVLRALRTAKATPVLCLTARDAVSDRVKGLELGADDYLVKPFSFAELLARVRAQLRRHAP 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + + + + GE L R+E +L L + G+ + +T I S ++G+ Sbjct: 121 AAATLQVADLTLDTARHAASRGGERIALTRQEFTLLWLLASRVGEILPRTLIASEVWGI- 179 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + E NVV+ I +LRKK+ + +++ R +GY ++ Sbjct: 180 NFDSETNVVDVAIRRLRKKIDDPFPLKLIETVRGMGYRLN 219 >gi|15900511|ref|NP_345115.1| DNA-binding response regulator VncR [Streptococcus pneumoniae TIGR4] gi|15902572|ref|NP_358122.1| VncR, response regulator [Streptococcus pneumoniae R6] gi|111657296|ref|ZP_01408060.1| hypothetical protein SpneT_02001494 [Streptococcus pneumoniae TIGR4] gi|116516514|ref|YP_816026.1| DNA-binding response regulator VncR [Streptococcus pneumoniae D39] gi|148983983|ref|ZP_01817302.1| DNA-binding response regulator VncR [Streptococcus pneumoniae SP3-BS71] gi|148988968|ref|ZP_01820368.1| DNA-binding response regulator VncR [Streptococcus pneumoniae SP6-BS73] gi|148992289|ref|ZP_01822012.1| DNA-binding response regulator VncR [Streptococcus pneumoniae SP9-BS68] gi|149002281|ref|ZP_01827223.1| DNA-binding response regulator VncR [Streptococcus pneumoniae SP14-BS69] gi|149005712|ref|ZP_01829451.1| DNA-binding response regulator VncR [Streptococcus pneumoniae SP18-BS74] gi|168482836|ref|ZP_02707788.1| VncR, response regulator [Streptococcus pneumoniae CDC1873-00] gi|168488288|ref|ZP_02712487.1| VncR, response regulator [Streptococcus pneumoniae SP195] gi|168490511|ref|ZP_02714654.1| VncR, response regulator [Streptococcus pneumoniae CDC0288-04] gi|168492763|ref|ZP_02716906.1| VncR, response regulator [Streptococcus pneumoniae CDC3059-06] gi|169833674|ref|YP_001694082.1| VncR, response regulator [Streptococcus pneumoniae Hungary19A-6] gi|182683534|ref|YP_001835281.1| DNA-binding response regulator VncR [Streptococcus pneumoniae CGSP14] gi|221231426|ref|YP_002510578.1| two-component system, response regulator [Streptococcus pneumoniae ATCC 700669] gi|225854136|ref|YP_002735648.1| VncR, response regulator [Streptococcus pneumoniae JJA] gi|225856303|ref|YP_002737814.1| VncR, response regulator [Streptococcus pneumoniae P1031] gi|225858438|ref|YP_002739948.1| VncR, response regulator [Streptococcus pneumoniae 70585] gi|237650128|ref|ZP_04524380.1| VncR, response regulator [Streptococcus pneumoniae CCRI 1974] gi|237821659|ref|ZP_04597504.1| VncR, response regulator [Streptococcus pneumoniae CCRI 1974M2] gi|303253928|ref|ZP_07340049.1| two-component system, response regulator [Streptococcus pneumoniae BS455] gi|303260094|ref|ZP_07346067.1| DNA-binding response regulator VncR [Streptococcus pneumoniae SP-BS293] gi|303261278|ref|ZP_07347226.1| DNA-binding response regulator VncR [Streptococcus pneumoniae SP14-BS292] gi|303263943|ref|ZP_07349864.1| DNA-binding response regulator VncR [Streptococcus pneumoniae BS397] gi|303265934|ref|ZP_07351830.1| DNA-binding response regulator VncR [Streptococcus pneumoniae BS457] gi|303268316|ref|ZP_07354113.1| DNA-binding response regulator VncR [Streptococcus pneumoniae BS458] gi|4583523|gb|AAD25108.1|AF140356_1 VncR [Streptococcus pneumoniae] gi|5830544|emb|CAB54582.1| response regulator [Streptococcus pneumoniae] gi|14972078|gb|AAK74755.1| DNA-binding response regulator VncR [Streptococcus pneumoniae TIGR4] gi|15458102|gb|AAK99332.1| VncR, response regulator [Streptococcus pneumoniae R6] gi|116077090|gb|ABJ54810.1| DNA-binding response regulator VncR [Streptococcus pneumoniae D39] gi|147759596|gb|EDK66587.1| DNA-binding response regulator VncR [Streptococcus pneumoniae SP14-BS69] gi|147762652|gb|EDK69612.1| DNA-binding response regulator VncR [Streptococcus pneumoniae SP18-BS74] gi|147924130|gb|EDK75242.1| DNA-binding response regulator VncR [Streptococcus pneumoniae SP3-BS71] gi|147925465|gb|EDK76542.1| DNA-binding response regulator VncR [Streptococcus pneumoniae SP6-BS73] gi|147928915|gb|EDK79927.1| DNA-binding response regulator VncR [Streptococcus pneumoniae SP9-BS68] gi|168996176|gb|ACA36788.1| VncR, response regulator [Streptococcus pneumoniae Hungary19A-6] gi|172043603|gb|EDT51649.1| VncR, response regulator [Streptococcus pneumoniae CDC1873-00] gi|182628868|gb|ACB89816.1| DNA-binding response regulator VncR [Streptococcus pneumoniae CGSP14] gi|183572926|gb|EDT93454.1| VncR, response regulator [Streptococcus pneumoniae SP195] gi|183574934|gb|EDT95462.1| VncR, response regulator [Streptococcus pneumoniae CDC0288-04] gi|183577048|gb|EDT97576.1| VncR, response regulator [Streptococcus pneumoniae CDC3059-06] gi|220673886|emb|CAR68392.1| two-component system, response regulator [Streptococcus pneumoniae ATCC 700669] gi|225720424|gb|ACO16278.1| VncR, response regulator [Streptococcus pneumoniae 70585] gi|225723575|gb|ACO19428.1| VncR, response regulator [Streptococcus pneumoniae JJA] gi|225725840|gb|ACO21692.1| VncR, response regulator [Streptococcus pneumoniae P1031] gi|301799650|emb|CBW32209.1| two-component system, response regulator [Streptococcus pneumoniae OXC141] gi|301801472|emb|CBW34164.1| two-component system, response regulator [Streptococcus pneumoniae INV200] gi|302599104|gb|EFL66129.1| two-component system, response regulator [Streptococcus pneumoniae BS455] gi|302637412|gb|EFL67899.1| DNA-binding response regulator VncR [Streptococcus pneumoniae SP14-BS292] gi|302638789|gb|EFL69251.1| DNA-binding response regulator VncR [Streptococcus pneumoniae SP-BS293] gi|302642154|gb|EFL72504.1| DNA-binding response regulator VncR [Streptococcus pneumoniae BS458] gi|302644518|gb|EFL74769.1| DNA-binding response regulator VncR [Streptococcus pneumoniae BS457] gi|302646348|gb|EFL76574.1| DNA-binding response regulator VncR [Streptococcus pneumoniae BS397] gi|332074410|gb|EGI84886.1| response regulator [Streptococcus pneumoniae GA17570] gi|332076436|gb|EGI86899.1| response regulator [Streptococcus pneumoniae GA41301] gi|332077033|gb|EGI87495.1| response regulator [Streptococcus pneumoniae GA17545] gi|332202480|gb|EGJ16549.1| response regulator [Streptococcus pneumoniae GA41317] gi|332203763|gb|EGJ17830.1| response regulator [Streptococcus pneumoniae GA47368] Length = 218 Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats. Identities = 50/220 (22%), Positives = 102/220 (46%), Gaps = 6/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++++G D G + L+ + +V+ + + L Sbjct: 3 ILIVEDEEMIREGVSDYLTDCGYETIEAADGQEA--LEQFSSYEVALVLLDIQMPKLNGL 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ IR SQVP++ ++ + + + F S D + KP + RV AI++R Sbjct: 61 EVLAEIRKTSQVPVLMLTAFQDEEYKMSAFASLADGYLEKPFSLSLLKVRVDAIFKRYYD 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + +V + + G+ P+ +E IL+YL+ N G+ + ++QI A++ Sbjct: 121 TGRIFSYKDTKVDFESYSASLAGQEVPINAKELEILDYLVKNEGRALTRSQIIDAVWKAT 180 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 DE + V++ +I +LRKKL D + + R +GY ++ Sbjct: 181 DEVPFDRVIDVYIKELRKKLDL----DCILTVRNVGYKLE 216 >gi|306825660|ref|ZP_07458999.1| DNA-binding response regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432021|gb|EFM34998.1| DNA-binding response regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 218 Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats. Identities = 50/220 (22%), Positives = 102/220 (46%), Gaps = 6/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++++G D G E L+ + +V+ + + L Sbjct: 3 ILIVEDEEMIREGISDYLADCGYETIQAADGEEA--LEQFSSYEVALVLLDIQMPKLNGL 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ IR SQVP++ ++ + + + F S D + KP + RV AI++R Sbjct: 61 EVLAEIRKTSQVPVLMLTAFQDEEYKMSAFASLADGYLEKPFSLSLLKVRVDAIFKRYYD 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + +V + + G+ + +E IL+YL+ N G+ + ++QI A++ + Sbjct: 121 TGRIFSYKDTKVDFESYSASIAGQEIAINAKELEILDYLVKNEGRALTRSQIIDAVWKVT 180 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 DE + V++ +I +LRKKL D + + R +GY ++ Sbjct: 181 DEVPFDRVIDVYIKELRKKLDL----DCILTVRNVGYKLE 216 >gi|313680468|ref|YP_004058207.1| two component transcriptional regulator, winged helix family [Oceanithermus profundus DSM 14977] gi|313153183|gb|ADR37034.1| two component transcriptional regulator, winged helix family [Oceanithermus profundus DSM 14977] Length = 235 Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats. Identities = 48/221 (21%), Positives = 92/221 (41%), Gaps = 5/221 (2%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + ++++D + +G E ++ ++ L Sbjct: 16 LILIVEDEKDIARFIELELQAEGYRTEVAYDGITGLSKFRETSPNLVILDLML--PVMDG 73 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R IR S +P++ ++ ++ ++ D+G DD + KP E+LARV A RR+ Sbjct: 74 LEVARRIRKTSNIPILILTAKDAVTDKVEGLDAGADDYLVKPFSIEELLARVRAHLRRVT 133 Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + +GR+ G L +E +LE L + GK ++ +I ++ Sbjct: 134 PAITGEIRVADLIINLEGREVFRGGRRIELSNKEFELLELLARSPGKVFSRFEIEEKVW- 192 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 NVV+ +I LRKKL + + + R +GY + Sbjct: 193 -PGYQGGSNVVDVYIGYLRKKLEAEGERRLIHTVRGVGYVL 232 >gi|304408131|ref|ZP_07389780.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] gi|304342819|gb|EFM08664.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] Length = 229 Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats. Identities = 40/223 (17%), Positives = 86/223 (38%), Gaps = 9/223 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD + +G ++ + E ++ + V ++ Sbjct: 5 ILVADDEPGIASAIAYALQREGFEVQVASDGEEALAAVAAFQPHVLLLDVM--MPKLNGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R + + +I ++ + + + G DD + KP RE+LAR A+ RRL+ Sbjct: 63 DVCRRLPTSGRPGVILLTVKNDIVDKVLGLELGADDYMTKPFDIRELLARTNALLRRLEA 122 Query: 122 SNNRAETGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 I + +D R G L +E +L L+ + ++ ++ Sbjct: 123 GKAVEPAAGIEIGGLLIRTDSRTVTADGSAIELTPKEFDLLALLLGKPDRVFSRDELLEL 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 ++G+ D V+ H+ +LRKKL + + + +GY Sbjct: 183 VWGI-DYEGGTRTVDIHVQRLRKKLGAQHAA-LLQTVFGVGYK 223 >gi|238755122|ref|ZP_04616469.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia ruckeri ATCC 29473] gi|238706682|gb|EEP99052.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia ruckeri ATCC 29473] Length = 234 Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats. Identities = 39/222 (17%), Positives = 93/222 (41%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D A +++ + +G + S D+ ++ L G G + Sbjct: 10 ILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVARLSEPFPDLVLLDWMLPGGSGIQF 69 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ + +P++ ++ + + + G DD + KP +E++AR+ A+ RR+ Sbjct: 70 IKHMKREAMTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRRIS 129 Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 E + + + + + E ++L + M + + ++ Q+ + ++ Sbjct: 130 PMAVEEVIEMQGLSLDPSSHRVMAKEKALDMGPTEFKLLHFFMTHPERVYSREQLLNYVW 189 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G + VE+ V+ HI +LRK L + V + R GY Sbjct: 190 GT-NVYVEDRTVDVHIRRLRKALEPEGHDKMVQTVRGTGYRF 230 >gi|170700827|ref|ZP_02891817.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia ambifaria IOP40-10] gi|170134275|gb|EDT02613.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia ambifaria IOP40-10] Length = 225 Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats. Identities = 44/221 (19%), Positives = 89/221 (40%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + G S++ L DV ++ L Sbjct: 3 ILIVEDEPKTAAYLKKGLEESGFSIDLAKDGAEGLMLAQEENYDVIVLDVML--PVLDGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120 + + +R P++ ++ +Q + + G DD + KP E+LAR+ R Sbjct: 61 GVLKRLRDTHTTPVLFLTARDDVQDRVHGLELGADDYLVKPFAFVELLARIRTLARRGPP 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 R G + + R + L RE +L+ L +G+ +++TQI S ++ + Sbjct: 121 RETERIVVGDLEIDVVRRRVKRGTVRIDLTPREFSLLQLLARRQGEVLSRTQIASYVWDM 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + NVVE I +LR K+ + + + R +GY ++ Sbjct: 181 -NFDSDTNVVEVAIRRLRAKIDDAFPVKLIHTVRGVGYVLE 220 >gi|318040122|ref|ZP_07972078.1| two-component response regulator [Synechococcus sp. CB0101] Length = 254 Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats. Identities = 51/231 (22%), Positives = 91/231 (39%), Gaps = 14/231 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD A ++ G + L S DV ++ Sbjct: 11 ILIADDEANIRRILETRLAMQGHQVAAAQDGTEALELFRSVEPDVVVLDVM--MPELDGF 68 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + IRA S+VP+I ++ + + + G DD + KP +E+ AR+ + RR Sbjct: 69 AVLERIRAQSEVPVIMLTALGDVADRITGLELGADDYMVKPFSPKELEARIQCVMRRASQ 128 Query: 122 SNNRAETGPIRV----------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + G + R GE L E +LE L++ G+ + + Sbjct: 129 GQGGSSVGSASSNVIAVGDLSVDFNRRQAFRCGERIRLTGMEFHLLELLISRNGEPINRL 188 Query: 172 QIFSAIYG-LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + A++G + A + VV+ HIS+LR KL + L + + + R +GY Sbjct: 189 DMLEAVWGYKPERASDSRVVDVHISRLRGKLEPDPLNPELILTARGMGYMF 239 >gi|262200993|ref|YP_003272201.1| response regulator receiver [Gordonia bronchialis DSM 43247] gi|262084340|gb|ACY20308.1| response regulator receiver [Gordonia bronchialis DSM 43247] Length = 228 Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats. Identities = 53/226 (23%), Positives = 97/226 (42%), Gaps = 10/226 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + D L +G N D+ ++ L G E Sbjct: 5 LIVEDEESLADPLAFLLRKEGFEASVVNDGAQALSTFDRVSPDIVLLDLML--PGMSGTE 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + +R S VP+I ++ S + + G DD V KP RE++AR+ A+ RR Sbjct: 63 ICKALRTRSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDL 122 Query: 123 NNRAETG------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 P+R+ + V GE LP +E +LEYL+ N G+ + + Q+ Sbjct: 123 AEEDLDIGILEAGPVRMDVERHIVAVNGEQITLPLKEFDLLEYLLRNAGRVLTRGQLIDR 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 ++G D + ++ H+ +LR K+ + + + R LGY ++ Sbjct: 183 VWGA-DYVGDTKTLDVHVKRLRSKIEPDPANPKHLITVRGLGYKLE 227 >gi|148657836|ref|YP_001278041.1| two component transcriptional regulator [Roseiflexus sp. RS-1] gi|148569946|gb|ABQ92091.1| two component transcriptional regulator, winged helix family [Roseiflexus sp. RS-1] Length = 231 Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats. Identities = 45/224 (20%), Positives = 85/224 (37%), Gaps = 6/224 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +++DD + A G L + R D+ ++ L G + Sbjct: 5 ILVVDDDRQIVRLVSAYLEHAGFQTLTAYDGAAALRLARTERPDLMVLDLMLPDVDGADL 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 R + +P+I ++ + + G DD + KP + RE++ARV A+ RR Sbjct: 65 TRTIRADPHLASMPIIMLTARVDDTDRIVGLELGADDYITKPFNPREVVARVRAVLRRTG 124 Query: 121 VSNNRAETGPI----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + R+ D + V L E +L L+++ G + ++ Sbjct: 125 GGSPVPPVILEAGRLRLDLDRHEARVADRTINLTPTEFELLRILLSHPGHAFTRRELIEQ 184 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G +D E ++SHI LR+KL +++ +GY + Sbjct: 185 GPG-YDYEGMERTIDSHIKNLRRKLDAAGAGVRIETVYGVGYRL 227 >gi|318041885|ref|ZP_07973841.1| two-component response regulator [Synechococcus sp. CB0101] Length = 254 Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats. Identities = 46/232 (19%), Positives = 91/232 (39%), Gaps = 15/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD A ++ G + ++ L + D+ ++ Sbjct: 15 ILVADDEANIRRILETRLTMQGHEVLMASNGAEALELFRGSEPDLVVLDVM--MPELDGF 72 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + IRA S+VP+I ++ + + G DD + KP +E+ AR+ + RR Sbjct: 73 AVVERIRAQSEVPIILLTALGDVADRITGLQLGADDYMVKPFSPKELEARIRCVMRRANT 132 Query: 122 SNNRAETGPIRV-----------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 S +G + R E L E +LE L++ G+ +++ Sbjct: 133 SQAGGGSGGGAAANVVVVGDLSVDFNRRQAFRAEERIRLTGMEFNLLELLISRSGEPISR 192 Query: 171 TQIFSAIYG-LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + ++G + + + VV+ HIS+LR KL + + + + R +GY Sbjct: 193 LDMLEKVWGYKPERSSDSRVVDVHISRLRAKLEHDPENPELILTARGMGYMF 244 >gi|299541796|ref|ZP_07052119.1| transcriptional regulatory protein [Lysinibacillus fusiformis ZC1] gi|298725534|gb|EFI66175.1| transcriptional regulatory protein [Lysinibacillus fusiformis ZC1] Length = 237 Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats. Identities = 49/230 (21%), Positives = 93/230 (40%), Gaps = 14/230 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + + + D+ ++ L + Sbjct: 5 ILVVDDEKPIADILQFNLIKEGYKVICAYDGDEALKKVEEEQPDLMLLDIML--PKRDGM 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R P+I ++ S + + G DD V KP RE++ARV A RRL+V Sbjct: 63 EVCREVRKKYDFPIIMLTAKGSEIDKVLGLEMGADDYVTKPFSTRELIARVKANMRRLQV 122 Query: 122 SNNRAETGPIR----------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 AE + D + E L RE +L YL + G+ + + Sbjct: 123 VTPAAEEAEEESNEIVVGSLVIQPDAYLVMKRDEAIELTHREFELLHYLGKHIGQVMTRE 182 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + ++G +D + V+ I +LR+K+ + + ++R +GY + Sbjct: 183 HLLQTVWG-YDYFGDVRTVDVTIRRLREKIEDNPSHPAWIVTRRGVGYYL 231 >gi|229163664|ref|ZP_04291612.1| hypothetical protein bcere0009_44300 [Bacillus cereus R309803] gi|228619801|gb|EEK76679.1| hypothetical protein bcere0009_44300 [Bacillus cereus R309803] Length = 229 Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats. Identities = 45/229 (19%), Positives = 87/229 (37%), Gaps = 11/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + + ++ +S E D+ ++ L Sbjct: 4 ILLVEDEISIAELQRDYLEISDFQVDVEHSGETGLQRALQEDYDLIILDIML--PKMNGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IRA +P++ +S + G DD + KP E++ARV A R + Sbjct: 62 EICKQIRAIKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121 Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + I + R + E +E +L + + + + + K Q+F Sbjct: 122 LSGNVSKQRDTLYIHGISIDQRARKVFINNEEIAFTTKEFDLLTFFVTHPNQVLNKEQLF 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 I+GL D A + V HI KLR+K+ + +++ GY + Sbjct: 182 ERIWGL-DSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRFNV 229 >gi|310642107|ref|YP_003946865.1| response regulator (chey-like receiver domain and hth-type DNA-binding domain) [Paenibacillus polymyxa SC2] gi|309247057|gb|ADO56624.1| Response regulator (CheY-like receiver domain and HTH-type DNA-binding domain) [Paenibacillus polymyxa SC2] Length = 230 Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats. Identities = 44/227 (19%), Positives = 82/227 (36%), Gaps = 15/227 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +G S + D ++ G L Sbjct: 5 ILVVDDDKDIVKLITKSLSYEGFETIPAYSGKEALCALKENHIDFIILDIM--MPGMNGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R IR P++ +S + + G DD + KP +E+ +R+ A +R++ Sbjct: 63 DVCRSIRNSYNAPILFLSARDKDIDKIVGLEIGADDYMTKPFSIQELTSRIRANFRKVDR 122 Query: 122 SNNRAETGPIRV---------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + L +E +IL LM N + + + Sbjct: 123 LLKEWNELSPNRERTDSPLILNDKTFEAFLNNRKLNLSTKEFQILSMLMHNPNNVLTRER 182 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 I+ ++G DE E N V HI +RKKL +D + + +GY Sbjct: 183 IYEYVWG--DEYGELNTVTVHIKNIRKKLG--PEYDFIKTIWGIGYK 225 >gi|225866652|ref|YP_002752030.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|225790714|gb|ACO30931.1| DNA-binding response regulator [Bacillus cereus 03BB102] Length = 229 Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats. Identities = 45/229 (19%), Positives = 88/229 (38%), Gaps = 11/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + + ++ +S E + D+ ++ L Sbjct: 4 ILLVEDEISIAELQRDYLEISDFQVDVEHSGEMGLQMALQEDYDLIILDIML--PKMNGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IRA +P++ +S + G DD + KP E++ARV A R + Sbjct: 62 EICKQIRAIKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121 Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + I + R + E +E +L + + + + + K Q+F Sbjct: 122 LSGNVSKQRDTLYIHGISIDQRSRKVFINNEEIAFTTKEFDLLTFFVTHPNQVLNKEQLF 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 I+GL D A + V HI KLR+K+ + +++ GY + Sbjct: 182 ERIWGL-DSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRFNV 229 >gi|218549942|ref|YP_002383733.1| transcriptional regulator PhoB [Escherichia fergusonii ATCC 35469] gi|218357483|emb|CAQ90122.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Escherichia fergusonii ATCC 35469] gi|324114618|gb|EGC08586.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia fergusonii B253] gi|325498318|gb|EGC96177.1| transcriptional regulator PhoB [Escherichia fergusonii ECD227] Length = 229 Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats. Identities = 38/224 (16%), Positives = 91/224 (40%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A +++ + +G + + D+ ++ L G L Sbjct: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWML--PGGSGL 62 Query: 62 ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 + + ++ +P++ ++ + + ++G DD + KP +E++AR+ A+ RR Sbjct: 63 QFIKHLKREALTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + E + + + E ++L + M + + ++ Q+ + Sbjct: 123 ISPMAVEEVIEMQGLSLDPTSHRVMTGETPLDMGPTEFKLLHFFMTHPERVYSREQLLNH 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + VE+ V+ HI +LRK L V + R GY Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALEPSGHDRMVQTVRGTGYRF 225 >gi|3236110|emb|CAA04532.1| arcA [Lactococcus lactis] Length = 233 Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats. Identities = 48/228 (21%), Positives = 91/228 (39%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + E + D+ ++ L L Sbjct: 4 ILVVDDEKPISDIVKFNLTKEGFEVFTAFDGEEALEAFKEVQPDLILLDLML--PKLDGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R IR S P+I +S S + + G DD V KP +RE+LAR+ A RR+ V Sbjct: 62 DVAREIRKTSDTPIIMVSAKDSEFDKVIGLELGADDYVTKPFSNRELLARIKANLRRINV 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPL--------PRRERRILEYLMANRGKRVAKTQI 173 + + + G RE +L YL + G+ + + + Sbjct: 122 APAESTDNVKKELIIGNLRINPAHYAAYKNGKQLDLTHREFELLYYLAQHLGEVITRENL 181 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++G +D + V+ + +LR+K+ + V ++R +GY + Sbjct: 182 LETVWG-YDYFGDVRTVDVTVRRLREKVEDTPSRPQYVSTRRGVGYYM 228 >gi|167037940|ref|YP_001665518.1| two component transcriptional regulator [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320116355|ref|YP_004186514.1| response regulator receiver [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166856774|gb|ABY95182.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319929446|gb|ADV80131.1| response regulator receiver [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 224 Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats. Identities = 53/222 (23%), Positives = 103/222 (46%), Gaps = 7/222 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++I+D ++D ++G + + + ++ + D+S I ++ Sbjct: 5 LVIEDEEGMRDILKTYLENNGYEVLVAENGKIGLEYFNNNK-DISIILLDIMLPDISGWS 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRRL 119 L + IR S+VP++ I+ L F+ G DD V KP +E++ARV + Sbjct: 64 LLKTIREKSKVPVMMITARGEEYDKLLGFELGADDYVVKPFSPKEVIARVKAILSRTYGA 123 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + E I + R+ V GE L +E +L+ L+ N+GK V++ + + ++G Sbjct: 124 SEEEGKTEYEGISINVSFREVTVDGEKIDLTPKEFDLLKLLIDNKGKVVSREKCLNEVWG 183 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +D + V++HI +LR+KL K + + +GY +D Sbjct: 184 -YDFYGDLRTVDTHIKQLREKLGEK--RKLIKTVWGIGYKLD 222 >gi|253578135|ref|ZP_04855407.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251850453|gb|EES78411.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 234 Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats. Identities = 39/224 (17%), Positives = 91/224 (40%), Gaps = 6/224 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + ++ + + E + + D++ I ++ Sbjct: 14 ILVVDDESRMRKLVKDFLTKKNFQVLEAGNGEEAMDIFYEEK-DIALIILDVMMPKMDGW 72 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV--NKPIHHREILARVAAIYRRL 119 E+ R IR +S+VP+I ++ + L FD GVD+ + Sbjct: 73 EVCREIRKNSKVPIIMLTARSDERDELLGFDLGVDEYISKPFSPKILVARVEAILRRTGQ 132 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + G I + V G+ L +E +L Y + N+G +++ +I ++++ Sbjct: 133 NNPEDVISAGGIVIDKAAHLATVDGKPMELSFKEFELLTYFLENQGIALSREKILNSVW- 191 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 +D + +++H+ KLR K+ +K + + + +GY + + Sbjct: 192 NYDYFGDARTIDTHVKKLRSKMGDKG--EYIKTVWGMGYKFEVD 233 >gi|225420051|ref|ZP_03762354.1| hypothetical protein CLOSTASPAR_06394 [Clostridium asparagiforme DSM 15981] gi|225041307|gb|EEG51553.1| hypothetical protein CLOSTASPAR_06394 [Clostridium asparagiforme DSM 15981] Length = 234 Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats. Identities = 44/232 (18%), Positives = 83/232 (35%), Gaps = 14/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D DG + + + + ++ G L Sbjct: 6 ILVVDDEKEIADLIEIYLVSDGYKVFKAENAARGLEILEKEEIHLVLLDIM--MPGMNGL 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH----------HREILAR 111 E+ + IR ++ +P+I +S + + +G DD V KP + + Sbjct: 64 EMCKKIRENNNIPIIMLSAKSTDLDKILGLGTGADDYVVKPFNPLELTARVKSQLRRYTQ 123 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + + +NN + + D V E L E IL L +N G+ + Sbjct: 124 LNPNSGSREQANNEITIKGMVINKDNHKVIVDDEEIKLTPIEFDILYLLASNPGRVFSTD 183 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 +IF ++ N V HI +LR KL+ + + +GY I+ Sbjct: 184 EIFEKVWNEKVYEAN-NTVMVHIRRLRGKLKEDTRQSKIITTVWGVGYKIEK 234 >gi|154482555|ref|ZP_02025003.1| hypothetical protein EUBVEN_00222 [Eubacterium ventriosum ATCC 27560] gi|149736580|gb|EDM52466.1| hypothetical protein EUBVEN_00222 [Eubacterium ventriosum ATCC 27560] Length = 228 Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats. Identities = 45/226 (19%), Positives = 90/226 (39%), Gaps = 11/226 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD L+ G +G ++ + D+ ++ L E Sbjct: 4 LVVDDEKLIVKGLKFSLEQEGYEVDCAYDGQEAVDKAKETEYDIVLLDLMLPI--LTGYE 61 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + IR S +P+I ++ + + G DD + KP + E+ AR+ AI RR K Sbjct: 62 VCQQIREFSDMPIIMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIIRRNKRK 121 Query: 123 NNRAETGPIRV-------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 P + + + ++ L +E IL+ L N GK + Q+ + Sbjct: 122 APAKPEEPKVITSGKLKLDIEAKRLYIEDREIRLTVKEFDILKLLAENPGKIYGREQLLT 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 I+G + V+ ++ +LR+K+ + + +K +GY Sbjct: 182 LIWGSK-YPGDARTVDVNVRRLREKVEENPAKPEYIHTKWGMGYYF 226 >gi|91201265|emb|CAJ74325.1| strongly similar to two-component response regulator OmpR/PhoB family [Candidatus Kuenenia stuttgartiensis] Length = 224 Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats. Identities = 50/223 (22%), Positives = 91/223 (40%), Gaps = 5/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + ++ +++ ++ L + D+ ++ L G Sbjct: 3 ILIIEDEKKIAKYLKQGLEENSYTVDIAHNGIDGLHLATHENYDLIVVDIML--PGINGK 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ + IR P I ++ S+ ++ D G DD + KP E+LAR+ A RR Sbjct: 61 EVLKQIRNTGIHTPAIFLTAIDSVNDKVNGLDIGADDYIVKPFSFSELLARIRACMRRRT 120 Query: 121 VSNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + R + L E ILEY M N G+ + +T I I+ Sbjct: 121 DNYVSNLKTGNVTLDPKTRKVFRDKQKIELTPIEFSILEYFMRNPGQILTRTMISEHIWD 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 ++ NV++ HIS+LR KL + + R +GY ++ Sbjct: 181 -YNYESFSNVIDVHISRLRNKLEKDFDKGIIHTVRRVGYVLEE 222 >gi|218294843|ref|ZP_03495697.1| two component transcriptional regulator, winged helix family [Thermus aquaticus Y51MC23] gi|218244751|gb|EED11275.1| two component transcriptional regulator, winged helix family [Thermus aquaticus Y51MC23] Length = 224 Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats. Identities = 49/221 (22%), Positives = 90/221 (40%), Gaps = 5/221 (2%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + ++++D + +G E + ++ ++ L Sbjct: 5 LILIVEDEKDIARFIELELQAEGYRTEVAHDGITGLSKFREVNPNLVILDLML--PVMDG 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ R IR S VP++ ++ ++ + D+G DD + KP E+LARV A RR+ Sbjct: 63 IEVARRIRKTSNVPILILTAKDRIEDKVQGLDAGADDYLVKPFSIEELLARVRAHLRRVT 122 Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + +GR+ G L +E +LE L N GK + +I ++ Sbjct: 123 PAITGEIRVADLVINLEGREVFRAGRRIELSNKEFELLELLAKNPGKVFTRYEIEEKVW- 181 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 NVV+ +I LRKKL + + R +GY + Sbjct: 182 -PGYQGGSNVVDVYIGYLRKKLEAGGERRLIHTVRGVGYVL 221 >gi|15800125|ref|NP_286137.1| transcriptional regulator PhoB [Escherichia coli O157:H7 EDL933] gi|15829703|ref|NP_308476.1| transcriptional regulator PhoB [Escherichia coli O157:H7 str. Sakai] gi|16128384|ref|NP_414933.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Escherichia coli str. K-12 substr. MG1655] gi|82542888|ref|YP_406835.1| transcriptional regulator PhoB [Shigella boydii Sb227] gi|89107269|ref|AP_001049.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Escherichia coli str. K-12 substr. W3110] gi|91209466|ref|YP_539452.1| transcriptional regulator PhoB [Escherichia coli UTI89] gi|117622660|ref|YP_851573.1| transcriptional regulator PhoB [Escherichia coli APEC O1] gi|157154834|ref|YP_001461578.1| transcriptional regulator PhoB [Escherichia coli E24377A] gi|157159917|ref|YP_001457235.1| transcriptional regulator PhoB [Escherichia coli HS] gi|168749852|ref|ZP_02774874.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli O157:H7 str. EC4113] gi|168756932|ref|ZP_02781939.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli O157:H7 str. EC4401] gi|168761596|ref|ZP_02786603.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli O157:H7 str. EC4501] gi|168768341|ref|ZP_02793348.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli O157:H7 str. EC4486] gi|168776304|ref|ZP_02801311.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli O157:H7 str. EC4196] gi|168783256|ref|ZP_02808263.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli O157:H7 str. EC4076] gi|168786237|ref|ZP_02811244.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli O157:H7 str. EC869] gi|168800273|ref|ZP_02825280.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli O157:H7 str. EC508] gi|170021229|ref|YP_001726183.1| transcriptional regulator PhoB [Escherichia coli ATCC 8739] gi|170079985|ref|YP_001729305.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Escherichia coli str. K-12 substr. DH10B] gi|170684203|ref|YP_001742532.1| transcriptional regulator PhoB [Escherichia coli SMS-3-5] gi|170768000|ref|ZP_02902453.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia albertii TW07627] gi|187733926|ref|YP_001879107.1| transcriptional regulator PhoB [Shigella boydii CDC 3083-94] gi|188493884|ref|ZP_03001154.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli 53638] gi|191166743|ref|ZP_03028570.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli B7A] gi|191173531|ref|ZP_03035058.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli F11] gi|193065166|ref|ZP_03046239.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli E22] gi|193068711|ref|ZP_03049672.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli E110019] gi|194428827|ref|ZP_03061362.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli B171] gi|194432677|ref|ZP_03064963.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella dysenteriae 1012] gi|194438843|ref|ZP_03070928.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli 101-1] gi|195938540|ref|ZP_03083922.1| transcriptional regulator PhoB [Escherichia coli O157:H7 str. EC4024] gi|208807385|ref|ZP_03249722.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli O157:H7 str. EC4206] gi|208815127|ref|ZP_03256306.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli O157:H7 str. EC4045] gi|208823163|ref|ZP_03263481.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli O157:H7 str. EC4042] gi|209398675|ref|YP_002269037.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli O157:H7 str. EC4115] gi|209917610|ref|YP_002291694.1| transcriptional regulator PhoB [Escherichia coli SE11] gi|215485480|ref|YP_002327911.1| transcriptional regulator PhoB [Escherichia coli O127:H6 str. E2348/69] gi|217326124|ref|ZP_03442208.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli O157:H7 str. TW14588] gi|218552961|ref|YP_002385874.1| transcriptional regulator PhoB [Escherichia coli IAI1] gi|218557308|ref|YP_002390221.1| transcriptional regulator PhoB [Escherichia coli S88] gi|218688261|ref|YP_002396473.1| transcriptional regulator PhoB [Escherichia coli ED1a] gi|218693859|ref|YP_002401526.1| transcriptional regulator PhoB [Escherichia coli 55989] gi|218698697|ref|YP_002406326.1| transcriptional regulator PhoB [Escherichia coli IAI39] gi|218703680|ref|YP_002411199.1| transcriptional regulator PhoB [Escherichia coli UMN026] gi|227884595|ref|ZP_04002400.1| transcriptional regulator PhoB [Escherichia coli 83972] gi|238899687|ref|YP_002925483.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Escherichia coli BW2952] gi|253774616|ref|YP_003037447.1| transcriptional regulator PhoB [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254160466|ref|YP_003043574.1| transcriptional regulator PhoB [Escherichia coli B str. REL606] gi|254791577|ref|YP_003076414.1| transcriptional regulator PhoB [Escherichia coli O157:H7 str. TW14359] gi|256020366|ref|ZP_05434231.1| transcriptional regulator PhoB [Shigella sp. D9] gi|256023984|ref|ZP_05437849.1| transcriptional regulator PhoB [Escherichia sp. 4_1_40B] gi|260842597|ref|YP_003220375.1| DNA-binding response regulator PhoB [Escherichia coli O103:H2 str. 12009] gi|260853619|ref|YP_003227510.1| DNA-binding response regulator PhoB [Escherichia coli O26:H11 str. 11368] gi|260866558|ref|YP_003232960.1| DNA-binding response regulator PhoB [Escherichia coli O111:H- str. 11128] gi|261223875|ref|ZP_05938156.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Escherichia coli O157:H7 str. FRIK2000] gi|261256411|ref|ZP_05948944.1| DNA-binding response regulator PhoB [Escherichia coli O157:H7 str. FRIK966] gi|291281302|ref|YP_003498120.1| Positive response regulator for pho regulon [Escherichia coli O55:H7 str. CB9615] gi|293403516|ref|ZP_06647607.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli FVEC1412] gi|293408543|ref|ZP_06652382.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli B354] gi|293413651|ref|ZP_06656300.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli B185] gi|293418465|ref|ZP_06660900.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli B088] gi|298379128|ref|ZP_06989009.1| transcriptional regulator PhoB [Escherichia coli FVEC1302] gi|300820364|ref|ZP_07100516.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 119-7] gi|300900462|ref|ZP_07118630.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 198-1] gi|300903338|ref|ZP_07121266.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 84-1] gi|300918223|ref|ZP_07134829.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 115-1] gi|300924116|ref|ZP_07140109.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 182-1] gi|300930309|ref|ZP_07145721.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 187-1] gi|300936383|ref|ZP_07151311.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 21-1] gi|300947953|ref|ZP_07162099.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 116-1] gi|300957961|ref|ZP_07170127.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 175-1] gi|300988101|ref|ZP_07178538.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 45-1] gi|300997414|ref|ZP_07181754.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 200-1] gi|301025440|ref|ZP_07188990.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 69-1] gi|301025776|ref|ZP_07189288.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 196-1] gi|301049597|ref|ZP_07196549.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 185-1] gi|301301545|ref|ZP_07207680.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 124-1] gi|301330743|ref|ZP_07223344.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 78-1] gi|301647317|ref|ZP_07247131.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 146-1] gi|306813135|ref|ZP_07447328.1| transcriptional regulator PhoB [Escherichia coli NC101] gi|307137041|ref|ZP_07496397.1| transcriptional regulator PhoB [Escherichia coli H736] gi|307312226|ref|ZP_07591862.1| two component transcriptional regulator, winged helix family [Escherichia coli W] gi|309794878|ref|ZP_07689299.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 145-7] gi|312964580|ref|ZP_07778836.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli 2362-75] gi|312970492|ref|ZP_07784673.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli 1827-70] gi|331640913|ref|ZP_08342048.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli H736] gi|331645570|ref|ZP_08346674.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli M605] gi|331651327|ref|ZP_08352352.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli M718] gi|331661771|ref|ZP_08362694.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli TA143] gi|331666746|ref|ZP_08367620.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli TA271] gi|331671945|ref|ZP_08372741.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli TA280] gi|331676064|ref|ZP_08376776.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli H591] gi|331681792|ref|ZP_08382425.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli H299] gi|332281544|ref|ZP_08393957.1| transcriptional regulator PhoB [Shigella sp. D9] gi|84029275|sp|P0AFJ6|PHOB_ECO57 RecName: Full=Phosphate regulon transcriptional regulatory protein phoB gi|84029276|sp|P0AFJ5|PHOB_ECOLI RecName: Full=Phosphate regulon transcriptional regulatory protein phoB gi|12513245|gb|AAG54745.1|AE005219_1 positive response regulator for pho regulon, sensor is PhoR (or CreC) [Escherichia coli O157:H7 str. EDL933] gi|42388|emb|CAA27659.1| unnamed protein product [Escherichia coli] gi|1657595|gb|AAB18123.1| phosphate regulon transcriptional regulatory protein phoB [Escherichia coli str. K-12 substr. MG1655] gi|1786599|gb|AAC73502.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Escherichia coli str. K-12 substr. MG1655] gi|13359906|dbj|BAB33872.1| positive response regulator for pho regulon PhoB [Escherichia coli O157:H7 str. Sakai] gi|16209152|gb|AAL09901.1| PhoB [CRIM plasmid pAH150] gi|81244299|gb|ABB65007.1| positive response regulator for pho regulon [Shigella boydii Sb227] gi|85674539|dbj|BAE76179.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Escherichia coli str. K12 substr. W3110] gi|91071040|gb|ABE05921.1| positive response regulator for pho regulon [Escherichia coli UTI89] gi|115511784|gb|ABI99858.1| positive response regulator for pho regulon [Escherichia coli APEC O1] gi|157065597|gb|ABV04852.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli HS] gi|157076864|gb|ABV16572.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli E24377A] gi|169756157|gb|ACA78856.1| two component transcriptional regulator, winged helix family [Escherichia coli ATCC 8739] gi|169887820|gb|ACB01527.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Escherichia coli str. K-12 substr. DH10B] gi|170123488|gb|EDS92419.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia albertii TW07627] gi|170521921|gb|ACB20099.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli SMS-3-5] gi|187430918|gb|ACD10192.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella boydii CDC 3083-94] gi|187768306|gb|EDU32150.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli O157:H7 str. EC4196] gi|188015917|gb|EDU54039.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli O157:H7 str. EC4113] gi|188489083|gb|EDU64186.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli 53638] gi|188999370|gb|EDU68356.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli O157:H7 str. EC4076] gi|189356009|gb|EDU74428.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli O157:H7 str. EC4401] gi|189362392|gb|EDU80811.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli O157:H7 str. EC4486] gi|189368045|gb|EDU86461.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli O157:H7 str. EC4501] gi|189373726|gb|EDU92142.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli O157:H7 str. EC869] gi|189377396|gb|EDU95812.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli O157:H7 str. EC508] gi|190903254|gb|EDV62976.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli B7A] gi|190906240|gb|EDV65852.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli F11] gi|192927140|gb|EDV81761.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli E22] gi|192958074|gb|EDV88516.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli E110019] gi|194413130|gb|EDX29417.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli B171] gi|194419238|gb|EDX35321.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella dysenteriae 1012] gi|194422137|gb|EDX38139.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli 101-1] gi|208727186|gb|EDZ76787.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli O157:H7 str. EC4206] gi|208731775|gb|EDZ80463.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli O157:H7 str. EC4045] gi|208737356|gb|EDZ85040.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli O157:H7 str. EC4042] gi|209160075|gb|ACI37508.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli O157:H7 str. EC4115] gi|209744234|gb|ACI70424.1| positive response regulator for pho regulon PhoB [Escherichia coli] gi|209744236|gb|ACI70425.1| positive response regulator for pho regulon PhoB [Escherichia coli] gi|209744238|gb|ACI70426.1| positive response regulator for pho regulon PhoB [Escherichia coli] gi|209744240|gb|ACI70427.1| positive response regulator for pho regulon PhoB [Escherichia coli] gi|209744242|gb|ACI70428.1| positive response regulator for pho regulon PhoB [Escherichia coli] gi|209910869|dbj|BAG75943.1| two-component response regulator [Escherichia coli SE11] gi|213521171|gb|ACJ50526.1| PhoB [Escherichia coli] gi|215263552|emb|CAS07882.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Escherichia coli O127:H6 str. E2348/69] gi|217322345|gb|EEC30769.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli O157:H7 str. TW14588] gi|218350591|emb|CAU96281.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Escherichia coli 55989] gi|218359729|emb|CAQ97270.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Escherichia coli IAI1] gi|218364077|emb|CAR01742.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Escherichia coli S88] gi|218368683|emb|CAR16423.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Escherichia coli IAI39] gi|218425825|emb|CAR06631.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Escherichia coli ED1a] gi|218430777|emb|CAR11651.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Escherichia coli UMN026] gi|222032194|emb|CAP74933.1| Phosphate regulon transcriptional regulatory protein [Escherichia coli LF82] gi|227838681|gb|EEJ49147.1| transcriptional regulator PhoB [Escherichia coli 83972] gi|238860869|gb|ACR62867.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Escherichia coli BW2952] gi|242376177|emb|CAQ30868.1| PhoB transcriptional dual regulator [Escherichia coli BL21(DE3)] gi|253325660|gb|ACT30262.1| two component transcriptional regulator PhoB, winged helix family [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253972367|gb|ACT38038.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Escherichia coli B str. REL606] gi|253976576|gb|ACT42246.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Escherichia coli BL21(DE3)] gi|254590977|gb|ACT70338.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Escherichia coli O157:H7 str. TW14359] gi|257752268|dbj|BAI23770.1| DNA-binding response regulator PhoB [Escherichia coli O26:H11 str. 11368] gi|257757744|dbj|BAI29241.1| DNA-binding response regulator PhoB [Escherichia coli O103:H2 str. 12009] gi|257762914|dbj|BAI34409.1| DNA-binding response regulator PhoB [Escherichia coli O111:H- str. 11128] gi|260450414|gb|ACX40836.1| two component transcriptional regulator PhoB, winged helix family [Escherichia coli DH1] gi|281177569|dbj|BAI53899.1| two-component response regulator [Escherichia coli SE15] gi|284920205|emb|CBG33264.1| phosphate regulon two-component system, response regulator [Escherichia coli 042] gi|290761175|gb|ADD55136.1| Positive response regulator for pho regulon [Escherichia coli O55:H7 str. CB9615] gi|291324993|gb|EFE64408.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli B088] gi|291429369|gb|EFF02389.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli FVEC1412] gi|291433709|gb|EFF06682.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli B185] gi|291471721|gb|EFF14204.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli B354] gi|294490411|gb|ADE89167.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli IHE3034] gi|298280241|gb|EFI21745.1| transcriptional regulator PhoB [Escherichia coli FVEC1302] gi|299879979|gb|EFI88190.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 196-1] gi|300298642|gb|EFJ55027.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 185-1] gi|300304233|gb|EFJ58753.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 200-1] gi|300315335|gb|EFJ65119.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 175-1] gi|300356031|gb|EFJ71901.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 198-1] gi|300396025|gb|EFJ79563.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 69-1] gi|300404633|gb|EFJ88171.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 84-1] gi|300407515|gb|EFJ91053.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 45-1] gi|300414608|gb|EFJ97918.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 115-1] gi|300419669|gb|EFK02980.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 182-1] gi|300452489|gb|EFK16109.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 116-1] gi|300458489|gb|EFK21982.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 21-1] gi|300461769|gb|EFK25262.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 187-1] gi|300527149|gb|EFK48218.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 119-7] gi|300843042|gb|EFK70802.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 124-1] gi|300843315|gb|EFK71075.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 78-1] gi|301074542|gb|EFK89348.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 146-1] gi|305853898|gb|EFM54337.1| transcriptional regulator PhoB [Escherichia coli NC101] gi|306907728|gb|EFN38230.1| two component transcriptional regulator, winged helix family [Escherichia coli W] gi|307552303|gb|ADN45078.1| positive response regulator for pho regulon [Escherichia coli ABU 83972] gi|307628132|gb|ADN72436.1| transcriptional regulator PhoB [Escherichia coli UM146] gi|308121531|gb|EFO58793.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 145-7] gi|309700660|emb|CBI99956.1| phosphate regulon two-component system, response regulator [Escherichia coli ETEC H10407] gi|310337141|gb|EFQ02279.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli 1827-70] gi|312290814|gb|EFR18691.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli 2362-75] gi|312944976|gb|ADR25803.1| transcriptional regulator PhoB [Escherichia coli O83:H1 str. NRG 857C] gi|315059676|gb|ADT74003.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Escherichia coli W] gi|315135081|dbj|BAJ42240.1| positive response regulator for pho regulon [Escherichia coli DH1] gi|315256222|gb|EFU36190.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 85-1] gi|315294171|gb|EFU53522.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 153-1] gi|315616662|gb|EFU97279.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli 3431] gi|320173784|gb|EFW48967.1| transcriptional regulator PhoB [Shigella dysenteriae CDC 74-1112] gi|320186028|gb|EFW60773.1| transcriptional regulator PhoB [Shigella flexneri CDC 796-83] gi|320192810|gb|EFW67450.1| transcriptional regulator PhoB [Escherichia coli O157:H7 str. EC1212] gi|320197165|gb|EFW71782.1| transcriptional regulator PhoB [Escherichia coli WV_060327] gi|320201640|gb|EFW76216.1| transcriptional regulator PhoB [Escherichia coli EC4100B] gi|320638387|gb|EFX08101.1| transcriptional regulator PhoB [Escherichia coli O157:H7 str. G5101] gi|320643767|gb|EFX12890.1| transcriptional regulator PhoB [Escherichia coli O157:H- str. 493-89] gi|320649118|gb|EFX17696.1| transcriptional regulator PhoB [Escherichia coli O157:H- str. H 2687] gi|320656011|gb|EFX23927.1| transcriptional regulator PhoB [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320662568|gb|EFX29957.1| transcriptional regulator PhoB [Escherichia coli O55:H7 str. USDA 5905] gi|320665138|gb|EFX32231.1| transcriptional regulator PhoB [Escherichia coli O157:H7 str. LSU-61] gi|323152134|gb|EFZ38427.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli EPECa14] gi|323160495|gb|EFZ46443.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli E128010] gi|323164189|gb|EFZ49996.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella sonnei 53G] gi|323170479|gb|EFZ56129.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli LT-68] gi|323178339|gb|EFZ63917.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli 1180] gi|323191316|gb|EFZ76579.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli RN587/1] gi|323379758|gb|ADX52026.1| two component transcriptional regulator PhoB, winged helix family [Escherichia coli KO11] gi|323938583|gb|EGB34832.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli E1520] gi|323943204|gb|EGB39360.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli E482] gi|323945298|gb|EGB41354.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli H120] gi|323952990|gb|EGB48858.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli H252] gi|323963384|gb|EGB58946.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli H489] gi|323965348|gb|EGB60806.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli M863] gi|323972248|gb|EGB67458.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli TA007] gi|323976121|gb|EGB71214.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli TW10509] gi|324010107|gb|EGB79326.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 57-2] gi|324010710|gb|EGB79929.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 60-1] gi|324016661|gb|EGB85880.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 117-3] gi|324116882|gb|EGC10795.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli E1167] gi|326341157|gb|EGD64949.1| transcriptional regulator PhoB [Escherichia coli O157:H7 str. 1044] gi|326346067|gb|EGD69806.1| transcriptional regulator PhoB [Escherichia coli O157:H7 str. 1125] gi|327254715|gb|EGE66331.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli STEC_7v] gi|330910192|gb|EGH38702.1| phosphate regulon transcriptional regulatory protein PhoB (SphR) [Escherichia coli AA86] gi|331037711|gb|EGI09931.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli H736] gi|331045732|gb|EGI17858.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli M605] gi|331051068|gb|EGI23120.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli M718] gi|331060193|gb|EGI32157.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli TA143] gi|331065970|gb|EGI37854.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli TA271] gi|331070934|gb|EGI42293.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli TA280] gi|331076122|gb|EGI47404.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli H591] gi|331080994|gb|EGI52159.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli H299] gi|332085836|gb|EGI91000.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella dysenteriae 155-74] gi|332094547|gb|EGI99593.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella boydii 5216-82] gi|332098617|gb|EGJ03583.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella boydii 3594-74] gi|332103896|gb|EGJ07242.1| transcriptional regulator PhoB [Shigella sp. D9] gi|332341761|gb|AEE55095.1| transcriptional regulator protein PhoB [Escherichia coli UMNK88] Length = 229 Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats. Identities = 39/224 (17%), Positives = 93/224 (41%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A +++ + +G + + D+ ++ L G + Sbjct: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWML--PGGSGI 62 Query: 62 ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 + + ++ S +P++ ++ + + ++G DD + KP +E++AR+ A+ RR Sbjct: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + E + + E + E ++L + M + + ++ Q+ + Sbjct: 123 ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNH 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + VE+ V+ HI +LRK L V + R GY Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225 >gi|299538494|ref|ZP_07051777.1| hypothetical protein BFZC1_20888 [Lysinibacillus fusiformis ZC1] gi|298726081|gb|EFI66673.1| hypothetical protein BFZC1_20888 [Lysinibacillus fusiformis ZC1] Length = 228 Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats. Identities = 49/229 (21%), Positives = 92/229 (40%), Gaps = 11/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D ++ + F + + + D++ ++ + Sbjct: 3 ILVVDDEKEIADLIELYLKNENYHVFKFYTAQEALACIEHEKVDLAVLDIMI--PDIDGF 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R IR P+I ++ ++ F G DD + KP E++ARV A RR + Sbjct: 61 TILRKIRETLNFPVIMLTAKEEEIDKINGFSLGADDYITKPFRPLELVARVKAQIRRFTL 120 Query: 122 SNNRAETGPIRVFS-------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N ++ + + R + L E IL YL ANRG ++ Q+F Sbjct: 121 YNLSSKQQEDIIDFAGLVINKNTRQVFLNERPISLTPTEFAILWYLCANRGTVISSEQLF 180 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 I+G N V HI LR+K+++ + + +GY+I+ Sbjct: 181 QEIWGEK-YFSSNNTVMVHIRHLREKMKDAAENPKYIKTVWGVGYTIEK 228 >gi|302530375|ref|ZP_07282717.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. AA4] gi|302439270|gb|EFL11086.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. AA4] Length = 230 Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats. Identities = 44/226 (19%), Positives = 93/226 (41%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V++ +G ++E + + R D ++ L Sbjct: 3 ILVVDDDRAVRESLRRSLEFNGYTVELASDGAQALETILANRPDAMVLDVM--MPRLDGL 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +R+ P++ ++ ++ + D+G DD + KP E+LAR+ A+ RR Sbjct: 61 EVARRLRSTGDDLPILVLTARDTVSDRVSGLDAGADDYLPKPFALEELLARLRALLRRAA 120 Query: 121 VSNNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + E + + R+ G L R E +LE ++ + + +I Sbjct: 121 PDAQQGETSEVLSFADLTLDPGTREVRRGGREISLTRTEFALLELFLSYPKHVLTRGRIL 180 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G +D N +E ++ LR+K + + + R +GY + Sbjct: 181 EEVWG-YDFPTSGNALEVYVGYLRRKTEAEGEPRLIHTVRGVGYVL 225 >gi|254975257|ref|ZP_05271729.1| two-component response regulator [Clostridium difficile QCD-66c26] gi|255092647|ref|ZP_05322125.1| two-component response regulator [Clostridium difficile CIP 107932] gi|255314384|ref|ZP_05355967.1| two-component response regulator [Clostridium difficile QCD-76w55] gi|255517062|ref|ZP_05384738.1| two-component response regulator [Clostridium difficile QCD-97b34] gi|255650166|ref|ZP_05397068.1| two-component response regulator [Clostridium difficile QCD-37x79] gi|260683289|ref|YP_003214574.1| two-component response regulator [Clostridium difficile CD196] gi|260686885|ref|YP_003218018.1| two-component response regulator [Clostridium difficile R20291] gi|306520160|ref|ZP_07406507.1| two-component response regulator [Clostridium difficile QCD-32g58] gi|260209452|emb|CBA62960.1| two-component response regulator [Clostridium difficile CD196] gi|260212901|emb|CBE04143.1| two-component response regulator [Clostridium difficile R20291] Length = 233 Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats. Identities = 51/232 (21%), Positives = 92/232 (39%), Gaps = 14/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D ++G ++ F + + S D++ ++ L Sbjct: 5 ILIVDDEKEIADLIEVYLKNEGFTVYKFYTGKEALECIESKDLDMAILDIML--PDIDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + IR P+I ++ + G DD + KP + E++ARV RR Sbjct: 63 HICQKIREKYYYPIIMLTAKIEDIDKIMGLTIGADDYITKPFNPLEVVARVKTQLRRYMR 122 Query: 122 SNNRAETGPIRVFSD----------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 NN E I V + G+ L E IL YL ++GK V Sbjct: 123 YNNSYEQQSIIVNEYDIKGLIINKETHKCSLFGKEVALTPIEFSILWYLCEHQGKVVPSE 182 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 ++F A++G N V +HI +LR+K+ + + +GY+I+ Sbjct: 183 ELFEAVWGEKYLD-NNNTVMAHIGRLREKIHEPSKNPKFIKTVWGVGYTIEK 233 >gi|308070352|ref|YP_003871957.1| sensory transduction protein [Paenibacillus polymyxa E681] gi|305859631|gb|ADM71419.1| Hypothetical sensory transduction protein [Paenibacillus polymyxa E681] Length = 232 Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats. Identities = 35/226 (15%), Positives = 81/226 (35%), Gaps = 12/226 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD V+ + DG+ + + + S D+ ++ + + Sbjct: 7 LVVDDERTVRKLIKTVLEADGMVVLQAENGTEAMRMISEGPFDLVLLDIM--MEDIDGYD 64 Query: 63 LP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + P+I +S + F G D + KP + A+V +R + Sbjct: 65 VLGQSRNMGIHTPIIFLSGKKEDTDQIIGFGLGADAYITKPFSPPVLCAQVKNQIKRYRQ 124 Query: 122 SNNRAET------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + GP + + L +E +++++ M + + +K Q++ Sbjct: 125 LQESKQQASRIALGPFLFNHHTFTFQKNNQEIALSSKEIQLMKFFMEHPNQVFSKEQLYQ 184 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 I+ D V+ N + +I LR K+ + + +GY Sbjct: 185 NIW--KDTVVDNNTIMVYIRHLRTKIEENPTNPKYIKTVWGIGYRF 228 >gi|255262515|ref|ZP_05341857.1| phosphate regulon transcriptional regulatory protein PhoB [Thalassiobium sp. R2A62] gi|255104850|gb|EET47524.1| phosphate regulon transcriptional regulatory protein PhoB [Thalassiobium sp. R2A62] Length = 229 Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats. Identities = 47/221 (21%), Positives = 89/221 (40%), Gaps = 4/221 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVL 61 ++++D ++ +G + E L DV ++ L G +V Sbjct: 9 LVVEDEPAQREVLAYNLEAEGFIVRIAEDGEEALMLIDEVAPDVIVLDWMLPNVSGIEVC 68 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + A +P+I +S + ++G DD V KP E++ARV RR++ Sbjct: 69 RQTKTKAATRNIPIIMLSARSEEVDRVRGLETGADDYVIKPYSVVELMARVRTHLRRVRP 128 Query: 122 SNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + G I + S+ L E ++L M G+ ++ + ++G Sbjct: 129 TTMGQVLVYGDITLDSETHRVTRGEHPIKLGPTEFKLLASFMEKPGRVWSRDLLLDRVWG 188 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + V+ V+ H+ +LRK L G DP+ + R GY++ Sbjct: 189 R-EIYVDTRTVDVHVGRLRKALNQFGGDDPLRTIRGAGYAL 228 >gi|228987786|ref|ZP_04147896.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228771944|gb|EEM20400.1| Uncharacterized sensory transduction protein ycbL [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 230 Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats. Identities = 43/228 (18%), Positives = 92/228 (40%), Gaps = 10/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D +++ +G + + E D+ ++ L Sbjct: 5 ILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIM--MPKLDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115 E+ RIIR S VP++ +S + G DD + KP E+ R + Sbjct: 63 EVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 Y + + + G + + E G+ L +E IL+ + N+ + K QI++ Sbjct: 123 YSATETTEKMIQIGDLMIDPINFTVEKNGKPLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 I+ + ++NV+ H+ +LR+K+ + + + + +GY ++ Sbjct: 183 LIWNE-EYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLEV 229 >gi|15924683|ref|NP_372217.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus Mu50] gi|15927271|ref|NP_374804.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus N315] gi|57650564|ref|YP_186577.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus COL] gi|87162022|ref|YP_494334.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88195500|ref|YP_500304.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148268173|ref|YP_001247116.1| two component transcriptional regulator [Staphylococcus aureus subsp. aureus JH9] gi|150394240|ref|YP_001316915.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus JH1] gi|151221798|ref|YP_001332620.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus str. Newman] gi|156980010|ref|YP_001442269.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus Mu3] gi|161509907|ref|YP_001575566.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221142557|ref|ZP_03567050.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253317163|ref|ZP_04840376.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253732344|ref|ZP_04866509.1| response regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253734523|ref|ZP_04868688.1| response regulator [Staphylococcus aureus subsp. aureus TCH130] gi|255006477|ref|ZP_05145078.2| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257794078|ref|ZP_05643057.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus aureus A9781] gi|258415782|ref|ZP_05682053.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus aureus A9763] gi|258421981|ref|ZP_05684901.1| response regulator receiver [Staphylococcus aureus A9719] gi|258438261|ref|ZP_05689545.1| response regulator receiver [Staphylococcus aureus A9299] gi|258443719|ref|ZP_05692058.1| response regulator receiver [Staphylococcus aureus A8115] gi|258445930|ref|ZP_05694106.1| response regulator [Staphylococcus aureus A6300] gi|258448389|ref|ZP_05696506.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus aureus A6224] gi|258451793|ref|ZP_05699815.1| two component transcriptional regulator [Staphylococcus aureus A5948] gi|258454130|ref|ZP_05702101.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus aureus A5937] gi|262048663|ref|ZP_06021546.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus D30] gi|262052264|ref|ZP_06024469.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus 930918-3] gi|269203311|ref|YP_003282580.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus ED98] gi|282893188|ref|ZP_06301422.1| two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP [Staphylococcus aureus A8117] gi|282920233|ref|ZP_06327958.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Staphylococcus aureus A9765] gi|282927823|ref|ZP_06335434.1| two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP [Staphylococcus aureus A10102] gi|284024741|ref|ZP_06379139.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus 132] gi|294848714|ref|ZP_06789460.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Staphylococcus aureus A9754] gi|295406003|ref|ZP_06815811.1| two-component system [Staphylococcus aureus A8819] gi|296274880|ref|ZP_06857387.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus MR1] gi|297245071|ref|ZP_06928948.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Staphylococcus aureus A8796] gi|304380716|ref|ZP_07363385.1| response regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|13701489|dbj|BAB42783.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus N315] gi|14247465|dbj|BAB57855.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus Mu50] gi|57284750|gb|AAW36844.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus aureus subsp. aureus COL] gi|87127996|gb|ABD22510.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87203058|gb|ABD30868.1| two-component response regulator, putative [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147741242|gb|ABQ49540.1| two component transcriptional regulator, winged helix family [Staphylococcus aureus subsp. aureus JH9] gi|149946692|gb|ABR52628.1| response regulator receiver [Staphylococcus aureus subsp. aureus JH1] gi|150374598|dbj|BAF67858.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus str. Newman] gi|156722145|dbj|BAF78562.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus Mu3] gi|160368716|gb|ABX29687.1| response regulator [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253723866|gb|EES92595.1| response regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253727464|gb|EES96193.1| response regulator [Staphylococcus aureus subsp. aureus TCH130] gi|257788050|gb|EEV26390.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus aureus A9781] gi|257839375|gb|EEV63848.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus aureus A9763] gi|257842025|gb|EEV66454.1| response regulator receiver [Staphylococcus aureus A9719] gi|257848305|gb|EEV72296.1| response regulator receiver [Staphylococcus aureus A9299] gi|257851125|gb|EEV75068.1| response regulator receiver [Staphylococcus aureus A8115] gi|257855172|gb|EEV78111.1| response regulator [Staphylococcus aureus A6300] gi|257858357|gb|EEV81242.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus aureus A6224] gi|257860505|gb|EEV83331.1| two component transcriptional regulator [Staphylococcus aureus A5948] gi|257863582|gb|EEV86339.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus aureus A5937] gi|259159865|gb|EEW44904.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus 930918-3] gi|259163310|gb|EEW47869.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus D30] gi|262075601|gb|ACY11574.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus ED98] gi|269941173|emb|CBI49560.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus aureus subsp. aureus TW20] gi|282590333|gb|EFB95412.1| two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP [Staphylococcus aureus A10102] gi|282594581|gb|EFB99566.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Staphylococcus aureus A9765] gi|282764506|gb|EFC04632.1| two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP [Staphylococcus aureus A8117] gi|285817376|gb|ADC37863.1| Alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus 04-02981] gi|294824740|gb|EFG41163.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Staphylococcus aureus A9754] gi|294969000|gb|EFG45021.1| two-component system [Staphylococcus aureus A8819] gi|297178151|gb|EFH37399.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Staphylococcus aureus A8796] gi|302751519|gb|ADL65696.1| response regulator OmpR [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340715|gb|EFM06646.1| response regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312830071|emb|CBX34913.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315130673|gb|EFT86659.1| response regulator [Staphylococcus aureus subsp. aureus CGS03] gi|315198610|gb|EFU28938.1| response regulator [Staphylococcus aureus subsp. aureus CGS01] gi|320140428|gb|EFW32282.1| response regulator receiver domain protein [Staphylococcus aureus subsp. aureus MRSA131] gi|320143967|gb|EFW35736.1| response regulator receiver domain protein [Staphylococcus aureus subsp. aureus MRSA177] gi|329314365|gb|AEB88778.1| Two component transcriptional regulator, winged helix family [Staphylococcus aureus subsp. aureus T0131] gi|329727125|gb|EGG63581.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus aureus subsp. aureus 21172] gi|329728426|gb|EGG64863.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus aureus subsp. aureus 21189] gi|329733213|gb|EGG69550.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus aureus subsp. aureus 21193] Length = 234 Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats. Identities = 41/227 (18%), Positives = 97/227 (42%), Gaps = 11/227 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + G + + S + D+ ++ L + ++ Sbjct: 6 LVVDDEHSIVTLLKYNLETAGYEVVVAFDGDEALEKVESEQPDLIILDVML--PKKDGID 63 Query: 63 LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115 + + +R + VP++ ++ + + G DD + KP RE+ + R + Sbjct: 64 VCKTVRTNKNLVPILMLTAKNDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRRSQF 123 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + ++ ++ G IR+ D + E+ L +E +L YL+ +G+ + + + + Sbjct: 124 VKEVEEIDDDITIGSIRIRPDYFEVYKHNELLELTPKEFELLLYLIERQGRVITREHMLN 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 ++ ++ A + +V+ HIS LR KL + + + R LGY ++ Sbjct: 184 TVW-NYEFAGDSRIVDVHISHLRDKLEDNPKKPQLIKTVRGLGYKLE 229 >gi|300790130|ref|YP_003770421.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299799644|gb|ADJ50019.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 233 Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats. Identities = 46/225 (20%), Positives = 95/225 (42%), Gaps = 10/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD V+D G +++ + + D+ ++ G LE Sbjct: 9 LVVDDDETVRDVVRRYLEVAGFTVDVAGNGAEGLAKFGAHEPDLVVLDVM--MPGINGLE 66 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + +R SQVP++ ++ + + G DD V KP +E+ RVA++ RR ++ Sbjct: 67 VCKRLRQVSQVPIVMLTALGEEENRIAGLQLGADDYVTKPFSPKELALRVASVLRRARMP 126 Query: 123 NNRA-----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 G +R+ R + G PL RE +L + +A+ G ++ + + Sbjct: 127 RPEPAAAVLVDGDLRLQMKARTATLSGRELPLTTREFDLLAFFLAHPGVAYSRADLLEKV 186 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 + +++ V H+ +LR+K+ + V + +GY D Sbjct: 187 WSWD--FGDQSTVTVHVRRLREKIERDPAKPTRVATVWGVGYRYD 229 >gi|331092175|ref|ZP_08341005.1| hypothetical protein HMPREF9477_01648 [Lachnospiraceae bacterium 2_1_46FAA] gi|330401947|gb|EGG81521.1| hypothetical protein HMPREF9477_01648 [Lachnospiraceae bacterium 2_1_46FAA] Length = 225 Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats. Identities = 39/223 (17%), Positives = 90/223 (40%), Gaps = 6/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + ++ DG ++ + + D++ + ++ Sbjct: 6 ILIVDDESRMRKLVKDFLERDGFTVLEAGDGLEAMDVFYDNK-DIALLILDVMMPKMDGW 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV--NKPIHHREILARVAAIYRRL 119 ++ R +R SQVP+I ++ + L FD GVD+ + + Sbjct: 65 QVCREVRQVSQVPIIMLTARADEKDELQGFDLGVDEYIAKPFSPKILVARVEAILRRTNV 124 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S + G I + + + L +E +L Y + N+G +++ +I + ++ Sbjct: 125 LFSEESIDAGGIVIDKTAHLVTIDNQPIELSYKEFELLSYFVENQGIALSREKILNNVW- 183 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D + +++H+ KLR KL +K D + + +GY + Sbjct: 184 NYDYFGDARTIDTHVKKLRSKLGDKG--DYIKTIWGMGYKFEV 224 >gi|315283776|ref|ZP_07871856.1| heme response regulator HssR [Listeria marthii FSL S4-120] gi|313612577|gb|EFR86639.1| heme response regulator HssR [Listeria marthii FSL S4-120] Length = 225 Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats. Identities = 42/223 (18%), Positives = 92/223 (41%), Gaps = 5/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +G + N E + + + ++ I+ Sbjct: 4 ILVVDDDRHILKLVGHYLRAEGFRVLEANDGVEAERIVETEQVHLAVIDVM--MPNMDGF 61 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119 EL + +RA + +P+I ++ +L F+ G DD V KP +E++ R+ A + R Sbjct: 62 ELCQKMRASYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPQELVFRIRALLRRSN 121 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + S + G I + ++ + +P +E +L L + G+ + ++ I+ Sbjct: 122 QASEVKINIGNITIDQKSYGIKIGNQERMIPVKEFELLYQLASYPGRIFTREELIERIW- 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 D + V+ HI +LR + + + R +GY ++ Sbjct: 181 QRDYDGSDRTVDVHIKRLRDHFDEEKDGIRIVTVRGVGYKLEE 223 >gi|255519927|ref|ZP_05387164.1| two-component response regulator [Listeria monocytogenes FSL J1-175] Length = 225 Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats. Identities = 41/223 (18%), Positives = 91/223 (40%), Gaps = 5/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +G + N E + + + ++ I+ Sbjct: 4 ILVVDDDRHILKLVGHYLRAEGFRVLEANDGVEAEKIVETEQVHLAVIDVM--MPNMDGF 61 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119 EL + +R ++ +P+I ++ +L F+ G DD V KP E++ R+ A + R Sbjct: 62 ELCKKMRTSYPDIPVIMLTAKDTLADKSRGFEVGTDDYVTKPFEPEELIFRIRALLRRSN 121 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + S + G I + ++ + +P +E +L L + G+ + ++ I+ Sbjct: 122 QASEVKINIGNITIDQKSYGIKIGNQERMIPVKEFELLYQLASYPGRIFTREELIERIW- 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 D + V+ HI +LR + + + R +GY ++ Sbjct: 181 QRDYDGSDRTVDVHIKRLRDHFDEEKDGIRIVTVRGVGYKLEE 223 >gi|223936068|ref|ZP_03627982.1| two component transcriptional regulator, winged helix family [bacterium Ellin514] gi|223895290|gb|EEF61737.1| two component transcriptional regulator, winged helix family [bacterium Ellin514] Length = 226 Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats. Identities = 37/225 (16%), Positives = 87/225 (38%), Gaps = 8/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D ++ +G + E + + D+ ++ Sbjct: 4 ILIIEDEVPMRTALKDCLEGEGYRVITAADGEEGLKRVMAEKPDLVLLDVM--MPKLDGF 61 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L +R + VP++ ++ ++ + D+G DD + KP E+LARV A+ RR + Sbjct: 62 ALCAELRRLANPVPILMLTAKGQIEDRVTGLDAGADDYLVKPFSTDELLARVRAMLRRHQ 121 Query: 121 VSNNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 G + + + + +E +L L G+ +++ + + Sbjct: 122 REKRAVATLRFGEVEIDMVKQTARRGRKDLHFTAKEYAMLRLLSEAPGEPISRERFLDVV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221 +G + V++HI+ LR K+ + + + +GY ++ Sbjct: 182 WG-YAAFPTTRTVDNHIASLRAKIESDPEKPRWIKTVHGVGYRLE 225 >gi|49187888|ref|YP_031141.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|49181815|gb|AAT57191.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] Length = 221 Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats. Identities = 44/224 (19%), Positives = 99/224 (44%), Gaps = 11/224 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D +++ +++ + L D+ ++ L Sbjct: 4 ILVIEDNPDIQELIREFLMAQNFTVDVVGAGTEGILLFQKNSYDLVLLDVML--PDIDGY 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYR 117 + +I+R S VP+I ++ + ++ + F+ G+DD + KP H+ + RV Sbjct: 62 SICKIMRGQSDVPIIMLTGSHNEESEIKGFELGIDDYITKPFHYTVFIKRVEAVLRRAAT 121 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + + + + S V G L +E I+ L+ NRGK ++++ + + + Sbjct: 122 KEAEAATILQFHELMLNSTAYAAYVHGNQIELTTKEFEIIYTLLQNRGKVLSRSDLLNKV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +G ++ + V+++HI LRKKL G + + + +GY I+ Sbjct: 182 WG-YEHYGDVRVIDTHIKNLRKKL----GIPYIKTVKGIGYKIE 220 >gi|65322038|ref|ZP_00394997.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bacillus anthracis str. A2012] Length = 232 Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats. Identities = 47/229 (20%), Positives = 89/229 (38%), Gaps = 11/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D + + + ++ +S E + D+ ++ L Sbjct: 7 ILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDYDLIILDIML--PKMNGF 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IRA +P++ +S + G DD + KP E++ARV A R + Sbjct: 65 EICKQIRAIKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 124 Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + I + R + E +E +L + + N + + K Q+F Sbjct: 125 LLGNVSKQRDTLYIHGISIDQRARKVFINNEEIAFTTKEFDLLTFFVTNPNQVLNKEQLF 184 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 I+GL D A + V HI KLR+K+ + +++ GY + Sbjct: 185 ERIWGL-DSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRFNV 232 >gi|242372585|ref|ZP_04818159.1| response regulator [Staphylococcus epidermidis M23864:W1] gi|242349802|gb|EES41403.1| response regulator [Staphylococcus epidermidis M23864:W1] Length = 280 Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats. Identities = 49/224 (21%), Positives = 93/224 (41%), Gaps = 12/224 (5%) Query: 4 LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63 ++DD + D +G + L D+ ++ L G +E+ Sbjct: 54 VVDDEKPIADILEFNLKKEGYEVFCAYDGNDAVDLIYEEEPDIVLLDIML--PGRDGMEV 111 Query: 64 PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123 R +R ++P+I ++ S + + G DD V KP RE++ARV A RR Sbjct: 112 CREVRKKFEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYSQP 171 Query: 124 --------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 N I ++ D + +GE L RE + YL + G+ + + + Sbjct: 172 AQEVSGATNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHLLQ 231 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218 ++G +D + V+ I +LR+K+ + + + ++R +GY Sbjct: 232 TVWG-YDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGY 274 >gi|254252356|ref|ZP_04945674.1| Response regulator [Burkholderia dolosa AUO158] gi|124894965|gb|EAY68845.1| Response regulator [Burkholderia dolosa AUO158] Length = 225 Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats. Identities = 45/221 (20%), Positives = 88/221 (39%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + G S++ L DV ++ L Sbjct: 3 ILIVEDEPKTGAYLKKGLEESGFSVDLAKDGAEGLMLAQEESYDVIVLDVML--PVLDGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120 + + +R P++ ++ +Q + + G DD + KP E+LARV R Sbjct: 61 GVLKRLRDTHTTPVLFLTARDDVQDRVHGLELGADDYLVKPFAFVELLARVRTLARRGPP 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 R G + + R + L RE +L+ L G+ +++TQI S ++ + Sbjct: 121 RETERITVGDLEIDVVRRRVKRGTVRIDLTPREFSLLQLLARRHGEVLSRTQIASYVWDM 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + NVVE I +LR K+ + + + R +GY ++ Sbjct: 181 -NFDSDTNVVEVAIRRLRAKVDDDFPIKLIHTVRGVGYVLE 220 >gi|46199440|ref|YP_005107.1| two-component response regulator [Thermus thermophilus HB27] gi|55981471|ref|YP_144768.1| response regulator [Thermus thermophilus HB8] gi|46197066|gb|AAS81480.1| two-component response regulator [Thermus thermophilus HB27] gi|55772884|dbj|BAD71325.1| response regulator [Thermus thermophilus HB8] Length = 227 Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats. Identities = 47/221 (21%), Positives = 90/221 (40%), Gaps = 5/221 (2%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + ++++D + +G E + ++ ++ L Sbjct: 8 LILIVEDEKDIARFIELELQAEGYRTEVAHDGITGLSKFREVSPNLVILDLML--PVMDG 65 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ + IR S VP++ ++ ++ + D+G DD + KP E+LARV A RR+ Sbjct: 66 IEVAKRIRKTSNVPILILTAKDRVEDKVAGLDAGADDYLVKPFSIEELLARVRAHLRRVT 125 Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + +GR+ L +E +LE L N GK ++ +I ++ Sbjct: 126 PAITGEIRVADLIINLEGREVFRGNRRIELSNKEFELLELLAKNPGKVFSRYEIEEKVW- 184 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 NVV+ +I LRKKL + + R +GY + Sbjct: 185 -PGYQGGSNVVDVYIGYLRKKLEAGGERRLIHTVRGVGYVL 224 >gi|302869659|ref|YP_003838296.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|315503859|ref|YP_004082746.1| two component transcriptional regulator, winged helix family [Micromonospora sp. L5] gi|302572518|gb|ADL48720.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|315410478|gb|ADU08595.1| two component transcriptional regulator, winged helix family [Micromonospora sp. L5] Length = 237 Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats. Identities = 47/223 (21%), Positives = 92/223 (41%), Gaps = 8/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + A G + S R D+ ++ L Sbjct: 14 LLVVEDDPNILELLSASLRFAGFDVATATSGSAALNAAKDHRPDLVVLDVML--PDLDGF 71 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R++R + P++ ++ + + G DD V KP E+ AR+ A+ RR Sbjct: 72 EVIRMLREGGTRTPVVFLTARDATDDKIRGLTLGGDDYVTKPFSLEELTARIRAVLRRTA 131 Query: 121 VSNNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + G+ L E ++L YLM N + ++K QI + Sbjct: 132 TGEQAPSRLTFADLELDEETHEVHRAGQRVQLSPTEFKLLRYLMLNANRVLSKAQILDHV 191 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + +D ++N+VES+IS LR+K+ + + + R +GY + Sbjct: 192 W-NYDFRGDDNIVESYISYLRRKV-DNTQPRLIHTLRGVGYVL 232 >gi|297544230|ref|YP_003676532.1| winged helix family two component transcriptional regulator [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842005|gb|ADH60521.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 223 Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats. Identities = 54/221 (24%), Positives = 104/221 (47%), Gaps = 6/221 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++I+D ++D ++G + + + ++ + D+ I ++ Sbjct: 5 LVIEDEEGMRDILKTYLENNGYEVLVAENGKIGLEYFNNNK-DIGIILLDIMLPDISGWS 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI--YRRLK 120 L + IR S+VP++ I+ L F+ G DD V KP +E++ARV AI + Sbjct: 64 LLKTIREKSKVPVMMITARGEEYDKLLGFELGADDYVVKPFSPKEVVARVKAILARTSGE 123 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + E I + R+ V GE L +E +L+ L+ N+GK V++ + + ++G Sbjct: 124 SEVEKTEYEGISINVSSREVTVDGEKIDLTPKEFDLLKLLIDNKGKVVSREKCLNEVWG- 182 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +D + V++HI +LR+KL K + + +GY +D Sbjct: 183 YDFYGDLRTVDTHIKQLREKLGEK--RKLIKTVWGIGYKLD 221 >gi|229015664|ref|ZP_04172650.1| Two-component response regulator [Bacillus cereus AH1273] gi|229021856|ref|ZP_04178428.1| Two-component response regulator [Bacillus cereus AH1272] gi|228739444|gb|EEL89868.1| Two-component response regulator [Bacillus cereus AH1272] gi|228745636|gb|EEL95652.1| Two-component response regulator [Bacillus cereus AH1273] Length = 233 Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats. Identities = 46/230 (20%), Positives = 88/230 (38%), Gaps = 11/230 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ ++G + E L + ++ + Sbjct: 6 ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIM--MPKIDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + +R ++P+I +S + +G DD V KP + E++AR+ + RR Sbjct: 64 HMCMKVRESKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMK 123 Query: 122 SNNRAETG-------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N A +++ V GE L RE ILE L N G + QI+ Sbjct: 124 MNGFAIQNEDELEIGEMKINISTHKVIVDGEEVKLTPREFSILELLARNPGMVFSAEQIY 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDWN 223 ++ +N V HI K+R+K+ + + +GY I+ + Sbjct: 184 EKVWNERSFQ-SDNTVMVHIRKVREKVEENPRKPIYIKTVWGVGYKIEKD 232 >gi|171319327|ref|ZP_02908439.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia ambifaria MEX-5] gi|172065027|ref|YP_001815739.1| two component heavy metal response transcriptional regulator [Burkholderia ambifaria MC40-6] gi|171095472|gb|EDT40440.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia ambifaria MEX-5] gi|171997269|gb|ACB68186.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia ambifaria MC40-6] Length = 225 Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats. Identities = 44/221 (19%), Positives = 89/221 (40%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + G S++ L DV ++ L Sbjct: 3 ILIVEDEPKTAAYLKKGLEESGFSIDLAKDGAEGLMLAQEENYDVIVLDVML--PVLDGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120 + + +R P++ ++ +Q + + G DD + KP E+LAR+ R Sbjct: 61 GVLKRLRDTHTTPVLFLTARDDVQDRVHGLELGADDYLVKPFAFVELLARIRTLARRGPP 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 R G + + R + L RE +L+ L +G+ +++TQI S ++ + Sbjct: 121 RETERIVVGDLEIDVVRRRVKRGTVRIDLTPREFSLLQLLARRQGEVLSRTQIASYVWDM 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + NVVE I +LR K+ + + + R +GY ++ Sbjct: 181 -NFDSDTNVVEVAIRRLRAKIDDAFPVKLIHTVRGVGYVLE 220 >gi|49187559|ref|YP_030812.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|118479811|ref|YP_896962.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|49181486|gb|AAT56862.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|118419036|gb|ABK87455.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] Length = 233 Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats. Identities = 47/229 (20%), Positives = 89/229 (38%), Gaps = 11/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D + + + ++ +S E + D+ ++ L Sbjct: 8 ILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDYDLIILDIML--PKMNGF 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IRA +P++ +S + G DD + KP E++ARV A R + Sbjct: 66 EICKQIRAIKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 125 Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + I + R + E +E +L + + N + + K Q+F Sbjct: 126 LLGNVSKQRDTLYIHGISIDQRARKVFINNEEIAFTTKEFDLLTFFVTNPNQVLNKEQLF 185 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 I+GL D A + V HI KLR+K+ + +++ GY + Sbjct: 186 ERIWGL-DSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRFNV 233 >gi|255525004|ref|ZP_05391950.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|255511260|gb|EET87554.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] Length = 232 Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats. Identities = 43/227 (18%), Positives = 92/227 (40%), Gaps = 8/227 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ + F +G ++E + + + + + ++ Sbjct: 8 ILIVDDDRDIREMLVNYFSKEGYAVEQACNGDEGLKVLKAKSFSLILLDVM--MPKMDGY 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + +R S +P+I ++ + F +G DD + KP E+ RV AI +R K Sbjct: 66 TMLCKLRESSNIPVILLTAKDQQMDKIKGFINGCDDYIVKPFDFTELSLRVMAILKRTKS 125 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFP----LPRRERRILEYLMANRGKRVAKTQIFSAI 177 +NN + + E + L +E IL L N+G+ + ++ + Sbjct: 126 NNNPCQDIIKIKDIEINTSEYTVKKDNLEIILTPKEYEILYTLAINKGRVYSTKMLYELL 185 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSIDWN 223 + +N V HI LR+KL + + + + +GY I+ + Sbjct: 186 W-KDTFMQNDNTVTMHIKNLREKLGDSVKQGKYIKTIWGVGYKIEKD 231 >gi|254386776|ref|ZP_05002067.1| two-component system response regulator [Streptomyces sp. Mg1] gi|194345612|gb|EDX26578.1| two-component system response regulator [Streptomyces sp. Mg1] Length = 246 Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats. Identities = 45/227 (19%), Positives = 91/227 (40%), Gaps = 15/227 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + D A +G ++ + ++ ++ L G LE Sbjct: 22 LVVEDDHTIADAISARLRAEGFQVQTAYDGPAAVAAAETWLPELLVLDVML--PGFDGLE 79 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R ++A VP++ ++ L G DD + KP RE+ ARV + RR++ + Sbjct: 80 VCRRVQAQRPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRVERA 139 Query: 123 NNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 A + R V E L E +L L +++ Q+ Sbjct: 140 TIAATAPRGATLRLGDLEIDHAQRRVRVHNEDVHLTPTEFDLLVCLAGTPRAVLSREQLL 199 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + ++ D + V+SHI LR+K+ G + + + +GY+++ Sbjct: 200 AEVWDWADASG-TRTVDSHIKALRRKI----GAERIRTVHGVGYALE 241 >gi|293365004|ref|ZP_06611721.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037] gi|306829124|ref|ZP_07462314.1| DNA-binding response regulator [Streptococcus mitis ATCC 6249] gi|307703252|ref|ZP_07640198.1| response regulator [Streptococcus oralis ATCC 35037] gi|291316454|gb|EFE56890.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037] gi|304428210|gb|EFM31300.1| DNA-binding response regulator [Streptococcus mitis ATCC 6249] gi|307623327|gb|EFO02318.1| response regulator [Streptococcus oralis ATCC 35037] Length = 218 Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats. Identities = 51/220 (23%), Positives = 102/220 (46%), Gaps = 6/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++++G D G E L+ + +V+ + + L Sbjct: 3 ILIVEDEEMIREGISDYLTDCGYETIQAADGEEA--LEQFSSYEVALVLLDIQMPKLNGL 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ IR SQVP++ ++ + + + F S D + KP + RV AI++R Sbjct: 61 EVLAEIRKTSQVPVLMLTAFQDEEYKMSAFASLADGYLEKPFSLSLLKVRVDAIFKRYYD 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + +V + + GE + +E IL+YL+ N G+ + ++QI A++ + Sbjct: 121 TGRIFSYKNTKVDFESYSASLAGEEVAINAKELEILDYLVKNEGRALTRSQIIDAVWKVT 180 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 DE + V++ +I +LRKKL D + + R +GY ++ Sbjct: 181 DEVPFDRVIDVYIKELRKKLDL----DCILTVRNVGYKLE 216 >gi|227873346|ref|ZP_03991607.1| response regulator [Oribacterium sinus F0268] gi|227840824|gb|EEJ51193.1| response regulator [Oribacterium sinus F0268] Length = 244 Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats. Identities = 44/239 (18%), Positives = 90/239 (37%), Gaps = 24/239 (10%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + + E + ++ L G Sbjct: 7 ILIVDDDSSIAELVSLYLEKECYDTRICEDGEEALKSLEKEPVALIILDLML--PGIDGY 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR S VP+I +S + + G DD + KP +E++ARV A+ RR + Sbjct: 65 EVCRRIRTSSNVPIIMLSAKGETFDKVLGLELGADDYMLKPFDTKELVARVKAVLRRSQH 124 Query: 122 SN--------------------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLM 161 + + +G+ +P +E +L +L Sbjct: 125 VFSPPLEEDKEKEGGEDLLRKGKYIAYEDLVINLSNYAVHYKGKAIDMPPKELELLYFLA 184 Query: 162 ANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ + + Q+ I+G ++ A + V+ HI +LR+KL ++ + + +GY Sbjct: 185 SSPNQVFTREQLLDHIWG-YEFAGDSRTVDVHIKRLREKLPQVEEWE-ISTVWGIGYKF 241 >gi|283784214|ref|YP_003364079.1| phosphate regulon two-component system, response regulator [Citrobacter rodentium ICC168] gi|212380327|gb|ACJ24903.1| PhoB [Citrobacter rodentium] gi|282947668|emb|CBG87223.1| phosphate regulon two-component system, response regulator [Citrobacter rodentium ICC168] Length = 229 Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats. Identities = 38/222 (17%), Positives = 91/222 (40%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D A +++ + +G + + D+ ++ L G G + Sbjct: 5 ILVVEDEAAIREMVCFVLEQNGFQPVEAEDYDTAVNQLNEPWPDLILLDWMLPGGSGLQF 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ + +P++ ++ + + ++G DD + KP +E++AR+ A+ RR+ Sbjct: 65 IKHLKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS 124 Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 E + + + E ++L + M + + ++ Q+ + ++ Sbjct: 125 PMAVEEVIEMQGLSLDPTSHRVMTGDNPLDMGPTEFKLLHFFMTHPERVYSREQLLNHVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G + VE+ V+ HI +LRK L V + R GY Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALETSGHDRMVQTVRGTGYRF 225 >gi|154250165|ref|YP_001410990.1| two component transcriptional regulator [Fervidobacterium nodosum Rt17-B1] gi|154154101|gb|ABS61333.1| two component transcriptional regulator, winged helix family [Fervidobacterium nodosum Rt17-B1] Length = 239 Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats. Identities = 48/228 (21%), Positives = 91/228 (39%), Gaps = 10/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++IDD+ + + +G + E D+ ++ L G + Sbjct: 6 IMIIDDQPEILELVSFTLQKEGYDVIPAEDAEKALQELKEKDVDMFIVDIMLPNMDGFEF 65 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R H P+I +S + + G DD + KP RE+LAR+ A++RR++ Sbjct: 66 VRTIRAKDKHKLTPVIFLSAKGEEFDKVLGLELGADDYIVKPFSVRELLARIRAVFRRMQ 125 Query: 121 -------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + + D + V+G+ L E +L +L N GK ++ + Sbjct: 126 LGTVVKEEKPKKIVAKDLEIDIDKYEVRVKGKKVSLTPLEFDLLRFLAENEGKVFSRDVL 185 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 ++G +D + V+ HI +LR K+ + V + R GY Sbjct: 186 LDKLWG-YDYFGDTRTVDVHIRRLRTKIEDDPSNPRYVVTVRGKGYKF 232 >gi|323482861|ref|ZP_08088262.1| hypothetical protein HMPREF9474_00011 [Clostridium symbiosum WAL-14163] gi|323691647|ref|ZP_08105909.1| two component transcriptional regulator [Clostridium symbiosum WAL-14673] gi|323403786|gb|EGA96083.1| hypothetical protein HMPREF9474_00011 [Clostridium symbiosum WAL-14163] gi|323504281|gb|EGB20081.1| two component transcriptional regulator [Clostridium symbiosum WAL-14673] Length = 234 Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats. Identities = 42/232 (18%), Positives = 83/232 (35%), Gaps = 14/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + DG + ++ + + + ++ G L Sbjct: 6 ILVVDDEKEIAELVEIYLVSDGYKVYKADNAQAGLDILEKETIHLVLLDIM--MPGMDGL 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH----------HREILAR 111 E+ + IR + +P+I +S + + +G DD V KP + + Sbjct: 64 EMCKKIRETNNIPIIMLSARSTDLDKILGLGTGADDYVVKPFNPLELTARVKSQLRRYTQ 123 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + + N + + D V GE L E IL L +N G+ + Sbjct: 124 LNPQSNVSSSAKNEISIKGLIINKDNHKVIVYGEEIKLTPIEFDILYLLASNPGRVFSTD 183 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 +IF ++ N V HI +LR K++ + + +GY I+ Sbjct: 184 EIFEKVWNEKVYEAN-NTVMVHIRRLRGKMKEDTRQNKIITTVWGVGYKIEK 234 >gi|296502499|ref|YP_003664199.1| two-component response regulator vanR [Bacillus thuringiensis BMB171] gi|296323551|gb|ADH06479.1| two-component response regulator vanR [Bacillus thuringiensis BMB171] Length = 232 Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats. Identities = 39/229 (17%), Positives = 82/229 (35%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +G + ++ E + ++ ++ ++ + Sbjct: 6 ILIVDDDKDIIQFINVNLKQEGFKVFSAHNGEEALEIINNNSIQLAILDIM--MPQMDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARVA 113 EL R IR +P++ +S S + F +G DD + KP E Sbjct: 64 ELCRRIREKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 123 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 +V + + + R + GE L + E I + A R + +I Sbjct: 124 FNQNAPQVMEKKINIRGLEIDEVSRTVMLYGERINLTKTEYDIFHLMAAARNRVFTIEEI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + +++ N V HI++LR K+ + + +GY I+ Sbjct: 184 YESVWNERAYE-SNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIE 231 >gi|323706108|ref|ZP_08117677.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium xylanolyticum LX-11] gi|323534552|gb|EGB24334.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium xylanolyticum LX-11] Length = 235 Score = 148 bits (373), Expect = 7e-34, Method: Composition-based stats. Identities = 43/224 (19%), Positives = 90/224 (40%), Gaps = 6/224 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++I+D A + + G ++ ++ + D+ ++ L G V Sbjct: 5 ILVIEDEAHILELLRYNLEAQGYNVVLTDNGKGGLEKCKETNPDLVLLDLMLPDIDGIDV 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYR 117 + + +P+I ++ + + G DD + KP RE + V + Sbjct: 65 CKKLKSDEHLKNIPIIMLTAKSEEVDKILGLELGADDYITKPFSIRELLARIKVVLRRSK 124 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 N + G I + ++ E+ L +E +L+ L NRGK + + + + Sbjct: 125 NESEDNEIIKFGDITIDTEKHLVYKGNELLDLTLKEFELLKLLSKNRGKVLTRDYLLDKV 184 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 +G ++ A E V+ HI LRKK+ + +++ R +GY + Sbjct: 185 WG-YEYAGETRTVDVHIRHLRKKIEDDDKLPVYIETVRGIGYKL 227 >gi|218899823|ref|YP_002448234.1| DNA-binding response regulator [Bacillus cereus G9842] gi|228903185|ref|ZP_04067319.1| hypothetical protein bthur0014_43500 [Bacillus thuringiensis IBL 4222] gi|228910522|ref|ZP_04074336.1| hypothetical protein bthur0013_46680 [Bacillus thuringiensis IBL 200] gi|228967768|ref|ZP_04128784.1| hypothetical protein bthur0004_45570 [Bacillus thuringiensis serovar sotto str. T04001] gi|218545601|gb|ACK97995.1| DNA-binding response regulator [Bacillus cereus G9842] gi|228791922|gb|EEM39508.1| hypothetical protein bthur0004_45570 [Bacillus thuringiensis serovar sotto str. T04001] gi|228849086|gb|EEM93926.1| hypothetical protein bthur0013_46680 [Bacillus thuringiensis IBL 200] gi|228856467|gb|EEN00993.1| hypothetical protein bthur0014_43500 [Bacillus thuringiensis IBL 4222] Length = 229 Score = 148 bits (373), Expect = 7e-34, Method: Composition-based stats. Identities = 46/229 (20%), Positives = 89/229 (38%), Gaps = 11/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D + + + ++ +S E + D+ ++ L Sbjct: 4 ILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQIALQEDYDLIILDIML--PKMNGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IRA +P++ +S + G DD + KP E++ARV A R + Sbjct: 62 EICKQIRAVKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIARYER 121 Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + I + R + E +E +L + + + + + K Q+F Sbjct: 122 LSGNVSKQRDTLYIHGISIDQRARKVFINNEEVAFTTKEFDLLTFFVTHPNQVLNKEQLF 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 I+GL D A + V HI KLR+K+ + +++ GY + Sbjct: 182 ERIWGL-DSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRFNV 229 >gi|308173799|ref|YP_003920504.1| yvrH [Bacillus amyloliquefaciens DSM 7] gi|307606663|emb|CBI43034.1| yvrH [Bacillus amyloliquefaciens DSM 7] Length = 235 Score = 148 bits (373), Expect = 7e-34, Method: Composition-based stats. Identities = 42/225 (18%), Positives = 89/225 (39%), Gaps = 10/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD + + + +G+ + ++ D+ ++ ++ + Sbjct: 9 LIIDDEREILELIKTVLIREGIDRVITASTARDGLAQFHQENPDLVILD--IMLPDGEGY 66 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + IR S VP+I +S + G DD + KP +++ RV A RR Sbjct: 67 DICKQIRDISHVPIIFLSAKGEETDKIVGLAIGGDDYITKPFSPKKVAYRVKAQLRRSSY 126 Query: 122 SNNRAETG-----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 P + + G L +E ++ Y + + + ++K ++ A Sbjct: 127 LQPSQTDTLIKAGPFELHQQQAELTKNGAAIELTPKELMLMTYFLQHPNRVISKETLYQA 186 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 ++G D +N V HI +LR+K+ D + + + LGY Sbjct: 187 VWGE-DFFGSDNTVMVHIRRLREKIETIPSTPDFLVTVKGLGYKF 230 >gi|302865510|ref|YP_003834147.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|315502058|ref|YP_004080945.1| two component transcriptional regulator, winged helix family [Micromonospora sp. L5] gi|302568369|gb|ADL44571.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|315408677|gb|ADU06794.1| two component transcriptional regulator, winged helix family [Micromonospora sp. L5] Length = 229 Score = 148 bits (373), Expect = 7e-34, Method: Composition-based stats. Identities = 44/223 (19%), Positives = 86/223 (38%), Gaps = 9/223 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + + +G E R D+ ++ L G ++ Sbjct: 6 LVVDDDPALAEMLGIVLRSEGFVPSFVADGERALAAFRDNRPDIVLLDLML--PGMSGID 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118 + R IR S VP++ ++ + +SG DD V KP +E++AR+ A RR Sbjct: 64 VARAIRGESGVPIVMLTAKSDTVDVVLGLESGADDYVVKPFKPKELVARMRARLRRGEDV 123 Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 ++ I + GE L E +L L + + + + Sbjct: 124 APEMLTIGPPGNQITIDVPAHTVSRDGEEVKLTPLEFDLLVALARKPRQVFTREVLLEQV 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219 +G + A + +V H+ +LR K+ + + + R +GY Sbjct: 184 WG-YRHAADTRLVNVHVQRLRAKIEPDPERPEIILTVRGVGYK 225 >gi|256827579|ref|YP_003151538.1| response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein [Cryptobacterium curtum DSM 15641] gi|256583722|gb|ACU94856.1| response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein [Cryptobacterium curtum DSM 15641] Length = 236 Score = 148 bits (373), Expect = 7e-34, Method: Composition-based stats. Identities = 44/225 (19%), Positives = 92/225 (40%), Gaps = 8/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D ++D A + + + S D+ ++ L Sbjct: 8 ILLVEDEKAIRDAVAAYLERENYWVTAVGDGQEALEEFSKHHFDLVILDLML--PRVPGE 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYR 117 + R IR +S VP+I ++ ++ + + G DD + KP RE++ARV ++ Sbjct: 66 RVCRAIRDNSDVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARVRALLRRVHS 125 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 ++ E G + + G V G+ L E ++L L G+ ++ ++ + Sbjct: 126 DVEPQREVLEFGELTIDVSGHKVLVSGKEVDLTASEFKLLTTLSRYPGRVYSRMELVEKV 185 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 G +D E ++SH+ LR K+ + + + +GY + Sbjct: 186 LG-YDFEGYERTIDSHVKNLRAKIGDNPRNPTWLHTVHGVGYRFE 229 >gi|260587254|ref|ZP_05853167.1| phosphate regulon response regulator PhoB [Blautia hansenii DSM 20583] gi|331083571|ref|ZP_08332682.1| hypothetical protein HMPREF0992_01606 [Lachnospiraceae bacterium 6_1_63FAA] gi|260542449|gb|EEX23018.1| phosphate regulon response regulator PhoB [Blautia hansenii DSM 20583] gi|330403782|gb|EGG83334.1| hypothetical protein HMPREF0992_01606 [Lachnospiraceae bacterium 6_1_63FAA] Length = 224 Score = 148 bits (373), Expect = 7e-34, Method: Composition-based stats. Identities = 44/225 (19%), Positives = 90/225 (40%), Gaps = 10/225 (4%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 M ++D +++ + G G +GF + + ++ ++ L GE Sbjct: 1 MIYCVEDERNIRELLVYTLGTTGFEAKGFGDGKEFKKALKEELPELILLDIML--PGEDG 58 Query: 61 LELPRII---RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAI 115 L + + S++P+I ++ + + + G DD + KP E + Sbjct: 59 YTLLEELKKEPSTSEIPVIMVTAKEAEYDKVRGLEGGADDYITKPFGMMEFLARVKAVLR 118 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + S + V + L +E +L YL+ N+G +++ +I Sbjct: 119 RSKKHSSKKEYHYKTLTVNVERHQVFDNDRAVELTLKEFELLRYLVENKGIVLSRDEILE 178 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I+G ++ A E V+ HI LR+KL + +++ R +GY I Sbjct: 179 KIWG-YECAGETRTVDVHIRTLRQKLGDSGF--LIETVRGVGYRI 220 >gi|311029649|ref|ZP_07707739.1| two component transcriptional regulator, winged helix family protein [Bacillus sp. m3-13] Length = 225 Score = 148 bits (373), Expect = 7e-34, Method: Composition-based stats. Identities = 50/222 (22%), Positives = 100/222 (45%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD +++ +G ++ N + S + I+ + Sbjct: 4 ILVADDDLFIRELIAIYLKKEGYTVFEANDGVEATNILSQRTVHLCIIDVM--MPNKNGW 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL + IR +P++ ++ + + F G DD + KP E++ RV A+ RR K+ Sbjct: 62 ELCKEIRELYDLPILMVTAKGESEDKVKGFQQGTDDYIVKPFDTHELIMRVKALLRRYKI 121 Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + T + ++ + + E P +E ++L L ++ G+ ++ Q+ I+G Sbjct: 122 NTTNKVTIGNVVIDANSMEVTINHEPIIFPLKEFQLLFKLASHPGQVFSRDQLIEEIWG- 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 D + V+SHI K+RKKL ++ FD + + R LGY ++ Sbjct: 181 SDFEGFDRTVDSHIKKIRKKLNQQMAFD-ILTIRGLGYRLEV 221 >gi|270264670|ref|ZP_06192935.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270041353|gb|EFA14452.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 238 Score = 148 bits (373), Expect = 7e-34, Method: Composition-based stats. Identities = 44/222 (19%), Positives = 86/222 (38%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G + + + ++ L G L Sbjct: 10 IMIVEDEPKLGQLLVDYLQAAGYATRWLTNGSEVVPAVHEHSPALILLDLML--PGSDGL 67 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R +R + VP++ ++ L + G DD + KP RE++ARV I RR Sbjct: 68 TVCRELRRFTDVPVVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCYR 127 Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + QG++ L E R+L+ L + G ++ Q+ + +Y Sbjct: 128 PLENQQEETQLHIDEPRFQASYQGQMLDLTPAEFRLLKTLASQPGNVFSREQLLNNLYDD 187 Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + V + ++SHI LR+KL + S +GY + Sbjct: 188 Y-RVVTDRTIDSHIKNLRRKLELIDGEKSFIRSVYGVGYRWE 228 >gi|295691207|ref|YP_003594900.1| winged helix family two component transcriptional regulator [Caulobacter segnis ATCC 21756] gi|295433110|gb|ADG12282.1| two component transcriptional regulator, winged helix family [Caulobacter segnis ATCC 21756] Length = 230 Score = 148 bits (373), Expect = 7e-34, Method: Composition-based stats. Identities = 59/222 (26%), Positives = 99/222 (44%), Gaps = 4/222 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVL 61 ++++D + +G + E L S D+ ++ L G +V Sbjct: 6 LVVEDEDALATLLHYNLDKEGYRVAVAGDGEEALTLASERAPDLVILDWMLPKVSGIEVC 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 R VP+I ++ + D+G DD V KP E+ ARV A+ RR++ Sbjct: 66 RRLRGRAETRNVPIIMLTARGEESDRIRGLDTGADDYVVKPFSMVELTARVRAVMRRIRP 125 Query: 122 --SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +++R G I + + G+ L E R+L+YLM + G+ ++ Q+ A++G Sbjct: 126 GLADDRITVGDIVIDRVAHRVKRNGKEIHLGPTEFRLLDYLMQHPGRVFSREQLLDAVWG 185 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D VE V+ HI +LRK L DP+ + R GYS+D Sbjct: 186 -SDVYVEARTVDVHIGRLRKALNGSSDGDPIRTVRSAGYSLD 226 >gi|72160661|ref|YP_288318.1| response regulator receiver [Thermobifida fusca YX] gi|71914393|gb|AAZ54295.1| response regulator receiver [Thermobifida fusca YX] Length = 241 Score = 148 bits (373), Expect = 7e-34, Method: Composition-based stats. Identities = 52/226 (23%), Positives = 97/226 (42%), Gaps = 12/226 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++IDD ++D A G + S E L S R D+ ++ L + Sbjct: 13 LVIDDEPNIRDLVQAALRFHGFEVSTAGSGEEGLALARSERPDLILLDVLL--PDISGFD 70 Query: 63 LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAA 114 + R +R VP+I ++ + T+ G DD V KP ++ RV Sbjct: 71 VCRRLRDEDDDVPVIYLTARDTPSDTVTGLSLGGDDYVTKPFSVEALIARVRALLRRVKR 130 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + S+ + + G L E R+L Y+M N G+ + + Q+ Sbjct: 131 DPNSAQSSDGVLRVADLELDEKTWTVRRGGVPIDLSPTEFRLLAYMMHNAGRVLTRAQLL 190 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G +D A + +VE+++S LR+KL + G + + ++R +GY++ Sbjct: 191 ENVWG-WDYAGQSQIVETYVSYLRRKL-DPFGPNLIHTQRGVGYAL 234 >gi|47094036|ref|ZP_00231766.1| DNA-binding response regulator [Listeria monocytogenes str. 4b H7858] gi|226225129|ref|YP_002759236.1| two-component response regulator [Listeria monocytogenes Clip81459] gi|254826316|ref|ZP_05231317.1| DNA-binding response regulator [Listeria monocytogenes FSL J1-194] gi|254932174|ref|ZP_05265533.1| DNA-binding response regulator [Listeria monocytogenes HPB2262] gi|47017586|gb|EAL08389.1| DNA-binding response regulator [Listeria monocytogenes str. 4b H7858] gi|225877591|emb|CAS06305.1| Putative two-component response regulator [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|293583731|gb|EFF95763.1| DNA-binding response regulator [Listeria monocytogenes HPB2262] gi|293595557|gb|EFG03318.1| DNA-binding response regulator [Listeria monocytogenes FSL J1-194] gi|328465186|gb|EGF36454.1| two-component response regulator [Listeria monocytogenes 1816] gi|332313013|gb|EGJ26108.1| Alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Listeria monocytogenes str. Scott A] Length = 225 Score = 148 bits (373), Expect = 7e-34, Method: Composition-based stats. Identities = 40/223 (17%), Positives = 91/223 (40%), Gaps = 5/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +G + + E + + + ++ I+ Sbjct: 4 ILVVDDDRHILKLVGHYLRAEGFRVLEASDGVEAEKIVETEQVHLAVIDVM--MPNMDGF 61 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119 EL + +R ++ +P+I ++ +L F+ G DD V KP E++ R+ A + R Sbjct: 62 ELCKKMRTSYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELIFRIRALLRRSN 121 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + S + G I + ++ + +P +E +L L + G+ + ++ I+ Sbjct: 122 QASEVKINIGNITIDQKSYGIKIGNQERMIPVKEFELLYQLASYPGRIFTREELIERIW- 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 D + V+ HI +LR + + + R +GY ++ Sbjct: 181 QRDYDGSDRTVDVHIKRLRDHFDEEKDGIRIVTVRGVGYKLEE 223 >gi|188585611|ref|YP_001917156.1| two component transcriptional regulator, winged helix family [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350298|gb|ACB84568.1| two component transcriptional regulator, winged helix family [Natranaerobius thermophilus JW/NM-WN-LF] Length = 246 Score = 148 bits (373), Expect = 7e-34, Method: Composition-based stats. Identities = 47/242 (19%), Positives = 95/242 (39%), Gaps = 26/242 (10%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + +G +E + D+ ++ L G L Sbjct: 4 ILLVEDEHHIAKLVNHNLIKEGYEVEHVTHGDEAFNKYFENDYDLIILDLML--PGLDGL 61 Query: 62 ELPRIIRAHS--QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI----------- 108 E+ R IR +S +P+I ++ + + G DD V KP RE+ Sbjct: 62 EVCRKIRGNSSLHIPVIMLTAKSDEIEKIVGLEMGADDYVTKPFSPRELLARVKAQLRGR 121 Query: 109 ---------LARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEY 159 I+ + S + + GP+ + + ++ + L +E +L Sbjct: 122 TKELTDEKSQDNSNKIFDQRDKSEDVKKNGPLSIKPEKYRAYIENQELQLTPKEFELLNI 181 Query: 160 LMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218 ++ N G+ + + ++ I+G +D + V+ HI LR+K+ G D V++ R +GY Sbjct: 182 MVTNSGQVLTREKLLEKIWG-YDFLGDTRTVDVHIRHLRQKISEAGGPPDLVETVRGIGY 240 Query: 219 SI 220 + Sbjct: 241 RL 242 >gi|320181620|gb|EFW56535.1| transcriptional regulator PhoB [Shigella boydii ATCC 9905] Length = 229 Score = 148 bits (373), Expect = 7e-34, Method: Composition-based stats. Identities = 39/224 (17%), Positives = 93/224 (41%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A +++ + +G + + D+ ++ L G + Sbjct: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWML--PGGSGI 62 Query: 62 ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 + + ++ S +P++ ++ + + ++G DD + KP +E++AR+ A+ RR Sbjct: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + E + + E + E ++L + M + + ++ Q+ + Sbjct: 123 ISSMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNH 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + VE+ V+ HI +LRK L V + R GY Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225 >gi|318078413|ref|ZP_07985745.1| two-component system response regulator [Streptomyces sp. SA3_actF] Length = 245 Score = 148 bits (373), Expect = 7e-34, Method: Composition-based stats. Identities = 50/227 (22%), Positives = 96/227 (42%), Gaps = 15/227 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + D A +G ++ + + D+ ++ L G LE Sbjct: 22 LVVEDDPTIVDAVAARLRAEGFLVQTAQDGPSAVETAEAWQPDLLVLDVML--PGFDGLE 79 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R ++AH VP++ ++ L G DD + KP RE+ ARV + RR++ + Sbjct: 80 VCRRVQAHRPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMREVAARVHVLLRRVERA 139 Query: 123 NNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 A T V R V+GE L E +L L +++ Q+ Sbjct: 140 ALAASTPRSGVLRLGELEVDHAQRRVRVRGEDVHLTPTEFDLLVCLAGTPRAVLSREQLL 199 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + ++ D + V+SHI LR+K+ G + + + +GY+++ Sbjct: 200 AEVWDWADASG-TRTVDSHIKALRRKI----GAERIRTVHGVGYALE 241 >gi|291454109|ref|ZP_06593499.1| two-component system response regulator [Streptomyces albus J1074] gi|291357058|gb|EFE83960.1| two-component system response regulator [Streptomyces albus J1074] Length = 246 Score = 148 bits (373), Expect = 7e-34, Method: Composition-based stats. Identities = 45/227 (19%), Positives = 93/227 (40%), Gaps = 15/227 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + + A +G ++ + + D+ ++ L G LE Sbjct: 23 LVVEDDTTIVEAISARLRAEGFLVQTATDGPAAVDTAEAWQPDLLILDIML--PGFDGLE 80 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120 + R ++A VP++ ++ L G DD + KP RE+ ARV + RR++ Sbjct: 81 VCRRVQAQRPVPVMMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRVERA 140 Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + G + + R V E L E +L L +++ Q+ Sbjct: 141 ALAAATPRSGILRLGELEIDHAQRRVRVHAEDVHLTPTEFDLLVCLANTPRAVLSREQLL 200 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + ++ D + V+SHI LR+K+ G + + + +GY+++ Sbjct: 201 AEVWDWADASG-TRTVDSHIKALRRKI----GAERIRTVHGVGYALE 242 >gi|270308315|ref|YP_003330373.1| two-component system, OmpR family, response regulator [Dehalococcoides sp. VS] gi|270154207|gb|ACZ62045.1| two-component system, OmpR family, response regulator [Dehalococcoides sp. VS] Length = 227 Score = 148 bits (373), Expect = 7e-34, Method: Composition-based stats. Identities = 48/223 (21%), Positives = 89/223 (39%), Gaps = 8/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD + + A +G + + D+ ++ L Sbjct: 5 ILIADDEKRIAEILQAYLEREGFMVVVTYDGKTALAKFHEENPDLIILDLML--PEISGW 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R IR S+VP+I ++ L L + G DD + KP +E++ARV A RR + Sbjct: 63 DVCREIRKESRVPIIMLTARDELTDKLIGLEIGADDYMTKPFEAKELVARVKAQLRRSEY 122 Query: 122 SNNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + + + R ++ G+ L E IL L A+ G+ ++ QI + Sbjct: 123 TPSLDSVLIIDQLEIDKARRLVKIGGKAVDLTATEFDILINLAASPGRVFSRMQILDKL- 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 E ++SHI LRKK+ + + +GY + Sbjct: 182 -GEAYEGYERTIDSHIKNLRKKIEPDPESPAYILTIHGVGYKM 223 >gi|220932165|ref|YP_002509073.1| two component transcriptional regulator, winged helix family [Halothermothrix orenii H 168] gi|219993475|gb|ACL70078.1| two component transcriptional regulator, winged helix family [Halothermothrix orenii H 168] Length = 227 Score = 148 bits (373), Expect = 7e-34, Method: Composition-based stats. Identities = 43/225 (19%), Positives = 88/225 (39%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ A S+E + + + D+ ++ L Sbjct: 5 ILVVDDEKKIRKVLKAFLEKHDFSIEMASDGKEALSKVNEFNPDLIILDLML--PEISGE 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-----HREILARVAAIY 116 E+ + IR Q P++ ++ + + ++ F G DD + KP R + Sbjct: 63 EVCQKIRQDKQTPILMLTAKGTEEDKVNGFAYGADDYLVKPFSLRELLARIKAILRRSNQ 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + K + G +++ + V G L R E IL L+ N G+ + Q+ Sbjct: 123 KAEKAEIFVYQDGRLKIHPNRMKVLVNGRDADLTRTEFNILVTLIRNPGQVFTREQLAKK 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + GL + + +++HI +RKKL N + + +GY + Sbjct: 183 VMGL-EYKGYDRTIDAHIKNIRKKL-NLEKNQLIITVYGVGYKFE 225 >gi|315186290|gb|EFU20051.1| two component transcriptional regulator, winged helix family [Spirochaeta thermophila DSM 6578] Length = 226 Score = 148 bits (373), Expect = 7e-34, Method: Composition-based stats. Identities = 49/224 (21%), Positives = 88/224 (39%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 +++DD + + +G + + D ++ L G +V Sbjct: 3 ILVVDDEPDIVELVRFHLEREGYEVVSTGEGRDALEKARNLLPDAIILDLMLPGMSGLEV 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L R S +P++ ++ + + G DD + KP R +LAR+ A+ +R Sbjct: 63 CRLLRQQDRTSHIPILMLTAKSEETDVVVGLELGADDYITKPFSPRILLARLKAVLKRTH 122 Query: 121 VSNNRAETGPI----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 R++ + + V+G L E IL +L N G ++ QI A Sbjct: 123 PPEGRSDEPIVVGELVIDPHRYSVRVRGREVILSATEFAILSFLARNPGWVFSRQQIIDA 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + G D V E V+ I +RKKL + D + + R +GY + Sbjct: 183 VKGE-DYPVTERAVDVQILSIRKKLGD--ARDYIQTVRGVGYRL 223 >gi|158340539|ref|YP_001521533.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] gi|158310780|gb|ABW32394.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] Length = 248 Score = 148 bits (373), Expect = 7e-34, Method: Composition-based stats. Identities = 44/228 (19%), Positives = 94/228 (41%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD ++ G + + D+ ++ Sbjct: 15 ILVADDEVPIRRILGTRLSKIGYQVYTAADGVEALDVFYDQCPDLIILDVM--MPKLDGY 72 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + +R S+VP+I ++ ++ + + G DD + KP +E+ +RV I RRL Sbjct: 73 GVCQAVRKTSRVPIIMLTALSEVKDRITGLEMGADDYMVKPFSPKELESRVRCILRRLSP 132 Query: 122 SNNRAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 +++ +D R E L +E +L L + G+ V++ ++ Sbjct: 133 LKAFNHQMTGVIEIGSVQIDTDKRQVFRDHERVFLTYKEFNLLALLASRPGETVSRQELL 192 Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220 ++ D V+ V+ H+S+LR+KL+ KLG + + R +G+++ Sbjct: 193 QKVWEYNKDSIVDTRTVDVHMSRLRQKLKEKLGETILIHTVRGVGFTL 240 >gi|75906838|ref|YP_321134.1| two component transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75700563|gb|ABA20239.1| two component transcriptional regulator, winged helix family [Anabaena variabilis ATCC 29413] Length = 228 Score = 148 bits (373), Expect = 7e-34, Method: Composition-based stats. Identities = 48/221 (21%), Positives = 96/221 (43%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + +G + + L + D++ ++ L G L Sbjct: 5 ILLVEDEVKLARFVELELSSEGYKVSVAHDGITGLTLARESTPDLAVLDWML--PGLSGL 62 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119 E+ R +RA +P+I ++ + + D+G DD V KP E+LAR+ A R Sbjct: 63 EICRRLRATGNSIPVILLTARDEVSDRVAGLDAGADDYVVKPFSIEELLARIRAHLRRTQ 122 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + + + + R+ L +E +LEYL+++ + + QI ++G Sbjct: 123 ETDEDLLQFEDLSLNRRTREVFRGNRAIELTAKEFDLLEYLLSHPRQVFTRDQILEKVWG 182 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D + N++E +I LR KL + + R +GY++ Sbjct: 183 -YDFMGDSNIIEVYIRYLRLKLEEHNEKRLIHTVRGVGYAL 222 >gi|298244434|ref|ZP_06968240.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297551915|gb|EFH85780.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 235 Score = 148 bits (373), Expect = 7e-34, Method: Composition-based stats. Identities = 50/219 (22%), Positives = 98/219 (44%), Gaps = 5/219 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD V+D F +G + + + + DV ++ L G LE Sbjct: 19 LIVDDEPQVRDLLQMGFSYEGFQVFLATNGPDATQVAQEQQPDVVILDLML--PGYDGLE 76 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLKV 121 + R +R +P+I ++ + + D+G DD + KP RE++AR A+ RR Sbjct: 77 VTRRLRRSRDLPIIMLTARDEIDDRVTGLDAGADDYLTKPFAFRELMARTRAVLRRRGNN 136 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + I + + RE +LE+ + N + +++ I S ++G + Sbjct: 137 IADILTFQGITLNRGTHQVTFHDQPIDFTPREFDLLEFFLMNPRQALSRDMIMSRVWG-Y 195 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D ++N+VE +I LR+KL + + + R +GY++ Sbjct: 196 DYMGDDNIVEVYIRHLREKLHDTP-PRLLQTVRGVGYTL 233 >gi|253575388|ref|ZP_04852726.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251845385|gb|EES73395.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 235 Score = 148 bits (373), Expect = 7e-34, Method: Composition-based stats. Identities = 37/227 (16%), Positives = 87/227 (38%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + A + +S + L + + D+ ++ L Sbjct: 6 ILIVDDEPSLLHVIKAYLEKQDYLVYETDSGQGALRLFENLQPDLIILDLML--PDLSGE 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAA 114 ++ + IR S +P++ ++ + G DD + KP RE++ R + Sbjct: 64 DVCKTIRKKSDIPILMLTAKSGEDDLVHGLLIGADDYLVKPFSPRELMARVISLLRRSKS 123 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + + + + V+GE+ L E ++LE L + + ++ ++ Sbjct: 124 AGYTTQEKKISFGGNRLSIDPERHEVTVRGEIVQLTPIEFKLLETLAKHPKRAFSRFELV 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 + I G D E ++ HI +R+K+ + + + +GY Sbjct: 184 NLIQG-DDFEGMERTIDVHIKNIRQKIGDDPKNPSFIITVYGVGYKF 229 >gi|229032321|ref|ZP_04188294.1| hypothetical protein bcere0028_43630 [Bacillus cereus AH1271] gi|228729101|gb|EEL80104.1| hypothetical protein bcere0028_43630 [Bacillus cereus AH1271] Length = 229 Score = 148 bits (373), Expect = 7e-34, Method: Composition-based stats. Identities = 45/229 (19%), Positives = 88/229 (38%), Gaps = 11/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + + ++ +S E + D+ ++ L Sbjct: 4 ILLVEDEISIAELQRDYLEISDFQVDVEHSGEVGLQMALQEDYDLIILDIML--PKMNGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IRA +P++ +S + G DD + KP E++ARV A R + Sbjct: 62 EICKQIRAIKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121 Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + I + R + E +E +L + + + + + K Q+F Sbjct: 122 LSGNVSKQRDTLYIHGISIDQRARKVFINNEEIAFTTKEFDLLTFFVTHPNQVLNKEQLF 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 I+GL D A + V HI KLR+K+ + +++ GY + Sbjct: 182 ERIWGL-DSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRFNV 229 >gi|227498819|ref|ZP_03928959.1| DNA-binding response regulator [Acidaminococcus sp. D21] gi|226904271|gb|EEH90189.1| DNA-binding response regulator [Acidaminococcus sp. D21] Length = 229 Score = 148 bits (373), Expect = 7e-34, Method: Composition-based stats. Identities = 44/226 (19%), Positives = 91/226 (40%), Gaps = 11/226 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++I+D + + +G ++ + + S+ D+ ++ L GE + Sbjct: 5 LIIEDDKGIAELERDYLEANGFEVQMAFTGLSGKKAALSSPVDLILLDIML--PGEDGFQ 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121 + R IRA +P++ +S + G DD + KP E++ARV + R + Sbjct: 63 VCREIRAEKDIPILMVSARQEDIDKIRGLGLGADDYIVKPFSPTELVARVKSHISRYEQL 122 Query: 122 ------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 G + + +Q + LP +E +L +L N G +K +F Sbjct: 123 TNRESSRPQVLRCGNLVIDLSSHQVFLQDKEILLPNKEFELLAFLAKNPGIVFSKDTLFE 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220 ++G D + + V HI+++R+K+ +++ GY Sbjct: 183 RVWGE-DSLGDTSTVSVHINRIREKIEEDSSKPYYIETVWGAGYRF 227 >gi|42783708|ref|NP_980955.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|42739637|gb|AAS43563.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] Length = 230 Score = 148 bits (373), Expect = 7e-34, Method: Composition-based stats. Identities = 44/228 (19%), Positives = 92/228 (40%), Gaps = 10/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D +++ +G + + E D+ ++ L Sbjct: 5 ILLVEDDISIQEMVQKYLIKEGFQVTIASDGEEGVNTYLQGSFDLIILDIM--MPKLDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115 E+ RIIR S VP++ +S + G DD + KP E+ R + Sbjct: 63 EVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 Y + + + G + + E G+ L +E IL+ + N+ + K QI++ Sbjct: 123 YSATETTEKMIQIGDLTLDPINFTVEKNGKPLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 I+ + ++NV+ H+ +LR+K+ + + + + +GY +D Sbjct: 183 LIWNE-EYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLDV 229 >gi|75764446|ref|ZP_00743942.1| Two-component response regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74488065|gb|EAO51785.1| Two-component response regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 229 Score = 148 bits (373), Expect = 7e-34, Method: Composition-based stats. Identities = 37/219 (16%), Positives = 90/219 (41%), Gaps = 4/219 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ +G + D+ ++ Sbjct: 14 ILIVDDDPHIRELVSVFLEREGFQTYEAIDGVDALRKMDDVKVDMVILDIM--MPNMDGF 71 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ +R + +P++ ++ + F G DD + KP E++ RV A+ +R ++ Sbjct: 72 DVCFELRKYYDIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQI 131 Query: 122 SNNRAETGPIR-VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + +++ + + + LP +E +L L + G+ ++ Q+ I+G Sbjct: 132 TVSQSIQVGNVLLNRKTFEVTSGEQTVTLPLKEFELLFTLGSKSGRTCSREQLIEEIWG- 190 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 +D E ++ HI++LR+K + + + + R LGY Sbjct: 191 YDFEGNERTLDVHINRLREKFQEEQSKFSIKTIRGLGYR 229 >gi|312877424|ref|ZP_07737388.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor lactoaceticus 6A] gi|311795813|gb|EFR12178.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor lactoaceticus 6A] Length = 217 Score = 147 bits (372), Expect = 7e-34, Method: Composition-based stats. Identities = 52/221 (23%), Positives = 99/221 (44%), Gaps = 8/221 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D ++ +G +E + + V ++ L K Sbjct: 3 ILLIEDEEKLRKIIKLYLEKEGFEVEEASDGNEAIEKFQPSMYSVVILDVMLPQK--DGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R IR P+I ++ + F+ G DD V KP+ +EI+ARV AI +R K Sbjct: 61 SVLREIRKKDDTPVIMLTARGEDDDKIFGFELGADDYVVKPVSPKEIVARVKAILKRTKK 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 N+ + + R+ V+G+ L ++E +L YL + +++ QI ++++G + Sbjct: 121 PNSNDI---LFIDKAAREVYVKGQKINLTQKEYELLLYLYERQNIALSREQILNSVWG-Y 176 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + + V++HI LR+KL + D + + R GY + Sbjct: 177 EYYGDLRTVDTHIKNLREKLGDL--RDYIKTVRGYGYKFEV 215 >gi|227832653|ref|YP_002834360.1| two-component system response regulator [Corynebacterium aurimucosum ATCC 700975] gi|262182862|ref|ZP_06042283.1| two-component system response regulator [Corynebacterium aurimucosum ATCC 700975] gi|227453669|gb|ACP32422.1| two-component system response regulator [Corynebacterium aurimucosum ATCC 700975] Length = 232 Score = 147 bits (372), Expect = 7e-34, Method: Composition-based stats. Identities = 40/228 (17%), Positives = 85/228 (37%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V++ +G + + S ++ ++ L Sbjct: 3 ILVVDDEQAVRESLRRSLKFNGYEVILAADGVQAVEMVHSEHPELLILDVM--MPNMDGL 60 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPI--------HHREILARV 112 E+ R +R+ P++ ++ + + D+G DD + KP + Sbjct: 61 EVCRTLRSEGWDRPILVLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLVRRAA 120 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 A + + + +++ +D R+ L R E +L LM N K +++ Sbjct: 121 AESIAKKQPVETQLSFEDLKLDADTREVTRGERQISLTRTEFALLRLLMENPRKVLSRNT 180 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I ++G +D N +E +I LRKK + + R +GY + Sbjct: 181 ILEEVWG-YDFPTSGNALEVYIGYLRKKTEESGEPRLIHTVRGVGYVM 227 >gi|152977294|ref|YP_001376811.1| two component transcriptional regulator [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152026046|gb|ABS23816.1| two component transcriptional regulator, winged helix family [Bacillus cytotoxicus NVH 391-98] Length = 221 Score = 147 bits (372), Expect = 7e-34, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 97/224 (43%), Gaps = 11/224 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D +++ ++ + L D+ ++ L Sbjct: 4 ILVIEDNPDIQELIREFLTAQNYKVDVAGTGTEGILLFQKNLYDLVLLDVML--PDIDGY 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYR 117 + +IIR S VP+I ++ + + + F+ GVDD + KP H+ + RV Sbjct: 62 SICKIIRGQSDVPIIMLTGLQNEENEIKGFELGVDDYITKPFHYAIFIKRVEAVLRRAAS 121 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + N + + + S V G+ L +E I+ L+ NRGK ++++ + + + Sbjct: 122 TEVENANILQFHELMLNSTAYAAYVNGDQVELTTKEFEIIYTLLQNRGKVLSRSDLLNKV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +G ++ + V+++HI LRKKL + + + +GY ID Sbjct: 182 WG-YEHYGDVRVIDTHIKNLRKKL----CIPYIKTVKGIGYKID 220 >gi|262276591|ref|ZP_06054400.1| phosphate regulon transcriptional regulatory protein PhoB [Grimontia hollisae CIP 101886] gi|262220399|gb|EEY71715.1| phosphate regulon transcriptional regulatory protein PhoB [Grimontia hollisae CIP 101886] Length = 229 Score = 147 bits (372), Expect = 7e-34, Method: Composition-based stats. Identities = 37/222 (16%), Positives = 92/222 (41%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D A +++ + G + ++ ++ L G G + Sbjct: 5 ILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSALEKICEPYPELILMDWMLPGGSGINL 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ + Q+P++ ++ + + + G DD + KP +E++AR+ A+ RR+ Sbjct: 65 IKHLKRDELTRQIPIVMLTARGEEEDKVRGLEVGADDYITKPFSPKELMARLKAVMRRVS 124 Query: 121 VSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++ ++ + + E ++L + M ++ + ++ Q+ + ++ Sbjct: 125 PTSLDDVIDVQGLKLDPVSHRVTSNDKPLEMGPTEFKMLHFFMTHQERVYSREQLLNNVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G + VE+ V+ HI +LRK L V + R GY Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALEEHGHDKLVQTVRGAGYRF 225 >gi|242373983|ref|ZP_04819557.1| response regulator [Staphylococcus epidermidis M23864:W1] gi|242348337|gb|EES39939.1| response regulator [Staphylococcus epidermidis M23864:W1] Length = 236 Score = 147 bits (372), Expect = 7e-34, Method: Composition-based stats. Identities = 46/230 (20%), Positives = 96/230 (41%), Gaps = 14/230 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + G +E E + ++ ++ L + +E Sbjct: 6 LVVDDEQSIVTLLKYNLETAGYIVEVAYDGEEALQKVEDEQPELIVLDVML--PKKDGIE 63 Query: 63 LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + IR+ VP++ ++ + + G DD + KP RE++ARV AI RR K Sbjct: 64 VCKSIRSDKNLVPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRRSKF 123 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPL---------PRRERRILEYLMANRGKRVAKTQ 172 + + ++ E F + +E +L YL+ +G+ + + Sbjct: 124 VSEIEKEDTDEEDIIIDSIRIRPEFFEVYKDEELLELTPKEFELLLYLIERQGRVITREH 183 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221 + ++++ ++ A + +V+ HIS LR KL + + R LGY ++ Sbjct: 184 MLNSVW-NYEFAGDSRIVDVHISHLRDKLEENPKQPKLIKTVRGLGYKLE 232 >gi|134276940|ref|YP_537039.2| Ycf27 [Porphyra yezoensis] gi|125991250|sp|Q1XDC9|YCF27_PORYE RecName: Full=Probable transcriptional regulator ycf27; AltName: Full=OmpR-like protein Length = 243 Score = 147 bits (372), Expect = 7e-34, Method: Composition-based stats. Identities = 44/229 (19%), Positives = 90/229 (39%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++ G + ++ E + + ++ Sbjct: 8 ILVVDDEASIRRILETRLTIIGYEVITASNGEEALLVFRKEYPSLVVLDVM--MPKLDGY 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-------- 113 + + +R S VP+I ++ + + + G DD V KP +E+ AR+ Sbjct: 66 GVCQELRKESDVPIIMLTALGEVCDRITGLEIGADDYVVKPFSPKELEARIRSVLRRADK 125 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 ++ G +++ ++ R E L E +LE L++ G+ ++ I Sbjct: 126 ITTSLGVPNSGIISIGFLKIDTNKRQVYKNNERVRLTGMEFSLLELLVSKAGEPFSRASI 185 Query: 174 FSAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 ++G + V+ VV+ HIS+LR KL + D + + R GY Sbjct: 186 LQEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPDLILTARGTGYLF 234 >gi|320451218|ref|YP_004203314.1| response regulator [Thermus scotoductus SA-01] gi|320151387|gb|ADW22765.1| response regulator [Thermus scotoductus SA-01] Length = 224 Score = 147 bits (372), Expect = 7e-34, Method: Composition-based stats. Identities = 48/221 (21%), Positives = 91/221 (41%), Gaps = 5/221 (2%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + ++++D + +G E ++ ++ L Sbjct: 5 LILIVEDEKDIARFIELELQAEGYRTEVAYDGITGLSRFREVNPNLVILDLML--PVMDG 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ + IR S VP++ ++ ++ ++ D+G DD + KP E+LARV A RR+ Sbjct: 63 IEVAKRIRKTSNVPILILTAKDRIEDKVEGLDAGADDYLVKPFSIEELLARVRAHLRRVS 122 Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + +GR+ G L +E +LE L N GK ++ +I ++ Sbjct: 123 PAITGEIRVADLIINLEGREVFRSGRRIELSNKEFELLELLAKNPGKVFSRYEIEEKVW- 181 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 NVV+ +I LRKKL + + R +GY + Sbjct: 182 -PGYQGGSNVVDVYIGYLRKKLEAAGERRLIHTVRGVGYVL 221 >gi|309774945|ref|ZP_07669963.1| DNA-binding response regulator [Erysipelotrichaceae bacterium 3_1_53] gi|308917271|gb|EFP62993.1| DNA-binding response regulator [Erysipelotrichaceae bacterium 3_1_53] Length = 233 Score = 147 bits (372), Expect = 7e-34, Method: Composition-based stats. Identities = 42/227 (18%), Positives = 87/227 (38%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + + +E E + ++ L E Sbjct: 4 ILIVEDDRAIAELERDYLEANDYEVEICEDGESGLKRALQEDFALILLDVML--PKEDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R +RA VP+I +S + G +D + KP + E++ARV + + Sbjct: 62 QVCRNLRAVKNVPIILVSAKREDMDKIRGLGLGANDYIVKPFNPSELIARVKSQIANYER 121 Query: 122 SNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + + + + + G LP +E +L +L N +K Q+F Sbjct: 122 LTQGTQRKENQLQIENLTIDLNSHEVFLDGNSLVLPNKEFELLVFLAKNPNIVFSKDQLF 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 I+GL D E + V HI+++R+K+ +++ GY Sbjct: 182 EKIWGL-DAIGEISTVTVHINRIREKIEKDSANPKFIETVWGSGYRF 227 >gi|238061271|ref|ZP_04605980.1| winged helix family two-component system transcriptional regulator [Micromonospora sp. ATCC 39149] gi|237883082|gb|EEP71910.1| winged helix family two-component system transcriptional regulator [Micromonospora sp. ATCC 39149] Length = 227 Score = 147 bits (372), Expect = 7e-34, Method: Composition-based stats. Identities = 49/225 (21%), Positives = 93/225 (41%), Gaps = 9/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D D + +G + + D+ ++ L E Sbjct: 5 LVVEDEESFSDALSYMLRKEGFEVSVAATGPSALTEFDRTGADIVLLDLML--PEMSGTE 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +R S VP+I ++ S + + G DD V KP RE++AR+ A+ RR Sbjct: 63 VCRQLRQRSHVPIIMVTARDSEIDKVVGLEIGADDYVTKPYSPRELVARIRAVLRRQSPD 122 Query: 123 NNRAETG-----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + P+R+ + V G LP +E +LE L+ N G+ + + Q+ + Sbjct: 123 VAESGAPTLAAGPVRMDIERHVVTVDGGTVQLPLKEFELLELLLRNAGRVLTRGQLIDRV 182 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 +G D + ++ H+ +LR K+ + + R LGY + Sbjct: 183 WGA-DYVGDTKTLDVHVKRLRSKIEPEPSAPRFIVTVRGLGYKFE 226 >gi|229043663|ref|ZP_04191369.1| Two-component response regulator vanR [Bacillus cereus AH676] gi|228725650|gb|EEL76901.1| Two-component response regulator vanR [Bacillus cereus AH676] Length = 243 Score = 147 bits (372), Expect = 7e-34, Method: Composition-based stats. Identities = 40/229 (17%), Positives = 83/229 (36%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +G + ++ E + ++ ++ ++ + Sbjct: 17 ILIVDDDKDIIQFINVNLKQEGFKVFSAHNGEEALEIINNNSIQLAILDIM--MPQMDGI 74 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARVA 113 EL R IR +P++ +S S + F +G DD + KP E Sbjct: 75 ELCRRIREKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 134 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 +V + + + R + GE L + E IL + A R + +I Sbjct: 135 FNQNAPQVMEKKINIRGLEIDEVSRTVMLYGERINLTKTEYDILHLMAAARNRVFTIEEI 194 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + +++ N V HI++LR K+ + + +GY I+ Sbjct: 195 YESVWNERAYE-SNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIE 242 >gi|227532778|ref|ZP_03962827.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227189612|gb|EEI69679.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|327383868|gb|AEA55344.1| VicR protein [Lactobacillus casei LC2W] gi|327387049|gb|AEA58523.1| VicR protein [Lactobacillus casei BD-II] Length = 238 Score = 147 bits (372), Expect = 7e-34, Method: Composition-based stats. Identities = 50/230 (21%), Positives = 94/230 (40%), Gaps = 14/230 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + E + D+ ++ L L Sbjct: 6 ILVVDDEKPISDIVKFNLDKEGYDVVTAYDGEEALKKVEAESPDLILLDLML--PKIDGL 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR P+I ++ S + + G DD V KP +RE++ARV A RR Sbjct: 64 EVARQIRKEHDTPIIMLTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRTAS 123 Query: 122 SNNRAETGPI----------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 SN + + D +GE L RE +L YL + G+ + + Sbjct: 124 SNAASNEEDEANKELEVGDLTIHPDAYTVSKRGENIELTHREFELLHYLARHLGQVMTRE 183 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + ++G +D + V+ + +LR+K+ + + + ++R +GY + Sbjct: 184 HLLQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPEWLVTRRGVGYYL 232 >gi|24111777|ref|NP_706287.1| transcriptional regulator PhoB [Shigella flexneri 2a str. 301] gi|30061895|ref|NP_836066.1| transcriptional regulator PhoB [Shigella flexneri 2a str. 2457T] gi|110804422|ref|YP_687942.1| transcriptional regulator PhoB [Shigella flexneri 5 str. 8401] gi|27735236|sp|P45607|PHOB_SHIFL RecName: Full=Phosphate regulon transcriptional regulatory protein phoB gi|24050564|gb|AAN41994.1| positive response regulator for pho regulon [Shigella flexneri 2a str. 301] gi|30040139|gb|AAP15872.1| positive response regulator for pho regulon [Shigella flexneri 2a str. 2457T] gi|110613970|gb|ABF02637.1| positive response regulator for pho regulon [Shigella flexneri 5 str. 8401] gi|281599731|gb|ADA72715.1| Phosphate regulon transcriptional regulatory protein phoB [Shigella flexneri 2002017] gi|313646986|gb|EFS11443.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella flexneri 2a str. 2457T] gi|332761723|gb|EGJ92002.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella flexneri 2747-71] gi|332764273|gb|EGJ94509.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella flexneri K-671] gi|332768503|gb|EGJ98686.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella flexneri 2930-71] gi|333022012|gb|EGK41257.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella flexneri K-304] Length = 229 Score = 147 bits (372), Expect = 7e-34, Method: Composition-based stats. Identities = 38/224 (16%), Positives = 93/224 (41%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A +++ + +G + + D+ ++ L G + Sbjct: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWML--PGGSGI 62 Query: 62 ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 + + ++ S +P++ ++ + + ++G DD + KP +E++AR+ A+ RR Sbjct: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + + + E + E ++L + M + + ++ Q+ + Sbjct: 123 ISPMAVEEVIKMQGLSLNPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNH 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + VE+ V+ HI +LRK L V + R GY Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225 >gi|51595267|ref|YP_069458.1| two-component regulatory system response regulator [Yersinia pseudotuberculosis IP 32953] gi|108808689|ref|YP_652605.1| phosphate regulon transcriptional regulator [Yersinia pestis Antiqua] gi|108811049|ref|YP_646816.1| phosphate regulon transcriptional regulatory protein [Yersinia pestis Nepal516] gi|149364950|ref|ZP_01886985.1| phosphate regulon transcriptional regulatory protein [Yersinia pestis CA88-4125] gi|153946834|ref|YP_001402096.1| PhoB family transcriptional regulator [Yersinia pseudotuberculosis IP 31758] gi|165935944|ref|ZP_02224514.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia pestis biovar Orientalis str. IP275] gi|167468099|ref|ZP_02332803.1| phosphate regulon transcriptional regulatory protein [Yersinia pestis FV-1] gi|170025493|ref|YP_001721998.1| two component transcriptional regulator [Yersinia pseudotuberculosis YPIII] gi|186894284|ref|YP_001871396.1| two component transcriptional regulator [Yersinia pseudotuberculosis PB1/+] gi|218930234|ref|YP_002348109.1| phosphate regulon transcriptional regulator [Yersinia pestis CO92] gi|229838810|ref|ZP_04458969.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Yersinia pestis biovar Orientalis str. PEXU2] gi|229896037|ref|ZP_04511207.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Yersinia pestis Pestoides A] gi|229899378|ref|ZP_04514521.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Yersinia pestis biovar Orientalis str. India 195] gi|229901275|ref|ZP_04516397.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Yersinia pestis Nepal516] gi|51588549|emb|CAH20157.1| response regulator in two-component regulatory system with PhoR (or CreC), regulates Pi uptake (OmpR family) [Yersinia pseudotuberculosis IP 32953] gi|108774697|gb|ABG17216.1| phosphate regulon transcriptional regulatory protein [Yersinia pestis Nepal516] gi|108780602|gb|ABG14660.1| phosphate regulon transcriptional regulatory protein [Yersinia pestis Antiqua] gi|115348845|emb|CAL21800.1| phosphate regulon transcriptional regulatory protein [Yersinia pestis CO92] gi|149291363|gb|EDM41437.1| phosphate regulon transcriptional regulatory protein [Yersinia pestis CA88-4125] gi|152958329|gb|ABS45790.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia pseudotuberculosis IP 31758] gi|165916089|gb|EDR34696.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia pestis biovar Orientalis str. IP275] gi|169752027|gb|ACA69545.1| two component transcriptional regulator, winged helix family [Yersinia pseudotuberculosis YPIII] gi|186697310|gb|ACC87939.1| two component transcriptional regulator, winged helix family [Yersinia pseudotuberculosis PB1/+] gi|229681204|gb|EEO77298.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Yersinia pestis Nepal516] gi|229687780|gb|EEO79853.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Yersinia pestis biovar Orientalis str. India 195] gi|229695176|gb|EEO85223.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Yersinia pestis biovar Orientalis str. PEXU2] gi|229700960|gb|EEO88989.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Yersinia pestis Pestoides A] gi|320016389|gb|ADV99960.1| osmolarity response regulator [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 229 Score = 147 bits (372), Expect = 7e-34, Method: Composition-based stats. Identities = 38/224 (16%), Positives = 91/224 (40%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A +++ + +G + S D+ ++ L G + Sbjct: 5 ILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVARLSEPFPDLVLLDWML--PGGSGI 62 Query: 62 ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 + + ++ +P++ ++ + + + G DD + KP +E++AR+ A+ RR Sbjct: 63 QFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRR 122 Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + E + + + + E ++L + M + + ++ Q+ + Sbjct: 123 ISPMAVEEVIEMQGLSLDPSSHRVMANDQALDMGPTEFKLLHFFMTHPERVYSREQLLNY 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + VE+ V+ HI +LRK L V + R GY Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALETDGHDKMVQTVRGTGYRF 225 >gi|313631991|gb|EFR99109.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Listeria seeligeri FSL N1-067] Length = 236 Score = 147 bits (372), Expect = 7e-34, Method: Composition-based stats. Identities = 45/233 (19%), Positives = 96/233 (41%), Gaps = 16/233 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A + G + L S + D+ ++ L + Sbjct: 4 ILVVDDEASIVTLLQFNIEKAGFEVVTAEDGSAGYELALSEKPDLIVLDLML--PEMDGI 61 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ + +R + VP++ ++ + + G DD + KP RE++AR+ AI RR + Sbjct: 62 EVTKKLRQNKVDVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTE 121 Query: 121 VSNNRAETGPI-----------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 E ++ + + + ++ L +E +L +L +RGK + Sbjct: 122 GKAEVIEENTDEVEATILIGDLKILPESYEVYLHDDLLDLTPKEFELLLFLANHRGKVFS 181 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 + Q+ ++ +D E +V+ H+S LR K+ + + + R GY ++ Sbjct: 182 RDQLLDTVW-NYDYVGETRIVDVHVSHLRDKIEIDTKQPKYIKTIRGFGYKME 233 >gi|257877591|ref|ZP_05657244.1| transcriptional regulator [Enterococcus casseliflavus EC20] gi|257811757|gb|EEV40577.1| transcriptional regulator [Enterococcus casseliflavus EC20] Length = 231 Score = 147 bits (372), Expect = 7e-34, Method: Composition-based stats. Identities = 50/230 (21%), Positives = 90/230 (39%), Gaps = 12/230 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + ++G +E F DV+ ++ L Sbjct: 5 IIVVDDEKEIAELVTTFLRNEGFQVESFYDGTSALAYLEKETVDVAVLDVML--PDIDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 +L + IR P++ ++ + G DD V KP + E++ARV RR + Sbjct: 63 QLLQQIRKTHFFPVLMLTAKGEDLDKITGLSLGADDYVTKPFNPLEVVARVKTQLRRYQR 122 Query: 122 SNNRAETGPIRVF--------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 N A I + + + G+ L E +IL YL ++G VA + Sbjct: 123 YNQSANPQKIEEYEKEGLLLKINSHQCFLYGKEVFLTPIEFKILLYLFEHQGSVVASETL 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDW 222 F A++ N V +HI++LR+KL + + +GY I+ Sbjct: 183 FEAVWKEKYLD-NNNTVMAHIARLREKLNEQPRKPKLIKTVWGVGYIIEK 231 >gi|153812201|ref|ZP_01964869.1| hypothetical protein RUMOBE_02599 [Ruminococcus obeum ATCC 29174] gi|149831608|gb|EDM86695.1| hypothetical protein RUMOBE_02599 [Ruminococcus obeum ATCC 29174] Length = 227 Score = 147 bits (372), Expect = 7e-34, Method: Composition-based stats. Identities = 39/224 (17%), Positives = 91/224 (40%), Gaps = 6/224 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + ++ + E + + D++ + ++ Sbjct: 6 ILVVDDESRMRKLVKDFLEKKNFHVLEAGDGEEAMDIFYEEK-DIALLILDVMMPKMDGW 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV--NKPIHHREILARVAAIYRRL 119 E+ R IR +S+VP+I ++ + L FD GVD+ + Sbjct: 65 EVCREIRKNSKVPIIMLTARGDERDELLGFDLGVDEYISKPFSPKILVARVEAILRRTGQ 124 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 N+ G I + V G+ L +E +L Y + N+G +++ +I ++++ Sbjct: 125 DAGNDVLSAGGIVIDKSAHQASVDGKPMELSFKEFELLTYFLENQGIALSREKILNSVW- 183 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 +D + +++H+ KLR K+ +K + + + +GY + + Sbjct: 184 NYDYFGDARTIDTHVKKLRSKMGDKG--EYIRTVWGMGYKFEVD 225 >gi|134099882|ref|YP_001105543.1| two-component response regulator [Saccharopolyspora erythraea NRRL 2338] gi|133912505|emb|CAM02618.1| two-component response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 234 Score = 147 bits (372), Expect = 7e-34, Method: Composition-based stats. Identities = 44/224 (19%), Positives = 91/224 (40%), Gaps = 9/224 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD V+D G ++E E L + + D+ ++ L G LE Sbjct: 12 LVVDDDTSVRDVVRRYLQRAGYAVELAGDGETALRLHAERKPDLVVLDLML--PGVGGLE 69 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYRR 118 + R +R +VP++ ++ + + G DD V KP R + + + Sbjct: 70 VCRRLRERGEVPVVMLTALGEESDRVVGLEQGADDYVVKPFSPRELVLRVASILRRARTS 129 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 G +R+ D R + G L RE +L +L+ + G+ ++ ++ ++ Sbjct: 130 QPAEGEVLTDGALRLDLDARRGTLDGGELALTGREFDLLVFLLRHPGRAFSRAELLEQVW 189 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221 G + + V H+ +LR+K+ +++ +GY D Sbjct: 190 GW--SFGDHSTVTVHMRRLREKVEPDPARPVRINTVWGVGYRYD 231 >gi|317123887|ref|YP_004097999.1| transcriptional regulator [Intrasporangium calvum DSM 43043] gi|315587975|gb|ADU47272.1| two component transcriptional regulator, winged helix family [Intrasporangium calvum DSM 43043] Length = 240 Score = 147 bits (372), Expect = 7e-34, Method: Composition-based stats. Identities = 44/223 (19%), Positives = 87/223 (39%), Gaps = 8/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D +++ G + + E L D+ ++ L Sbjct: 13 LLVVEDEPNIRELLSTSLRFAGFDVRTADDGETALRLAEEYHPDLVVLDVML--PDVDGF 70 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPI---HHREILARVAAIYR 117 E+ R +R + ++ ++ ++ + G DD V KP + V Sbjct: 71 EVTRRLRERGREQAVLFLTARDEVRDKVHGLTVGGDDYVTKPFSLEEVVARIRAVLRRTG 130 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + + D + G V L E ++L YL+ N + V+K QI + Sbjct: 131 STVDESATLRFHDLELNEDSHEVRRAGRVVELSPTEFKLLRYLLLNPNRVVSKLQILDHV 190 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + +D E +VES+IS LR+K+ G + +KR +GY + Sbjct: 191 WD-YDFRGESGIVESYISYLRRKIDAD-GPPLIHTKRGVGYVL 231 >gi|237786072|ref|YP_002906777.1| two-component system response regulator [Corynebacterium kroppenstedtii DSM 44385] gi|237758984|gb|ACR18234.1| two-component system, response regulator [Corynebacterium kroppenstedtii DSM 44385] Length = 248 Score = 147 bits (372), Expect = 7e-34, Method: Composition-based stats. Identities = 45/221 (20%), Positives = 94/221 (42%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + + +G S+ D+ ++ L + Sbjct: 29 ILVVDDDPAIAEMLMIVLQGEGFDTVVVGDGAEAVTAASNEDPDLILLDVML--PSMNGV 86 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R IR S VP++ +S + +SG DD +NKP +E++ARV A RR + Sbjct: 87 DVCRAIRKTSGVPIVMLSARTDTVDVVLGLESGADDYINKPFKPKELVARVRAQLRRREQ 146 Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + G + G+ PL E +L L + + + + ++ ++G Sbjct: 147 ATGDTIHVGDLVIDVPGHIVKRDGKEIPLTPIEFDLLTQLASRPKQVLTREELLREVWG- 205 Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + + + V+ HI++LR K+ + + + R +GY I Sbjct: 206 YKQPTDTRVLNVHINRLRIKVEKDHKNPKLIQAVRGVGYKI 246 >gi|184154491|ref|YP_001842831.1| two-component response regulator [Lactobacillus fermentum IFO 3956] gi|260662552|ref|ZP_05863447.1| two-component system response regulator [Lactobacillus fermentum 28-3-CHN] gi|183225835|dbj|BAG26351.1| two-component response regulator [Lactobacillus fermentum IFO 3956] gi|260553243|gb|EEX26186.1| two-component system response regulator [Lactobacillus fermentum 28-3-CHN] Length = 235 Score = 147 bits (372), Expect = 7e-34, Method: Composition-based stats. Identities = 49/227 (21%), Positives = 94/227 (41%), Gaps = 12/227 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + D +G + E S D+ ++ L LE Sbjct: 6 LVVDDEKPISDIIKFNLEKEGYEVVVAYDGEEALQKVESESPDLIVLDLML--PKIDGLE 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + +RA P+I ++ S + + G DD V KP +RE++ARV A RR + Sbjct: 64 VAKQVRAKRSTPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQDAT 123 Query: 123 NNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + A + D +GE L RE +L YL + G+ + + + Sbjct: 124 VSPANDDRTADIKVGDLTIHPDAYTVTKRGENINLTHREFELLHYLAQHIGQVINREHLL 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++G +D + V+ + +LR+K+ + + ++R +GY + Sbjct: 184 QTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPQWLITRRGVGYYL 229 >gi|69248477|ref|ZP_00604751.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Enterococcus faecium DO] gi|257878623|ref|ZP_05658276.1| transcriptional regulator [Enterococcus faecium 1,230,933] gi|257883117|ref|ZP_05662770.1| transcriptional regulator [Enterococcus faecium 1,231,502] gi|257891864|ref|ZP_05671517.1| transcriptional regulator [Enterococcus faecium 1,231,410] gi|257894434|ref|ZP_05674087.1| transcriptional regulator [Enterococcus faecium 1,231,408] gi|258616852|ref|ZP_05714622.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecium DO] gi|260559336|ref|ZP_05831518.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecium C68] gi|261208012|ref|ZP_05922690.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecium TC 6] gi|289566892|ref|ZP_06447299.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium D344SRF] gi|293556475|ref|ZP_06675049.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1039] gi|293563844|ref|ZP_06678277.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1162] gi|293567266|ref|ZP_06678620.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1071] gi|294615582|ref|ZP_06695438.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1636] gi|294619807|ref|ZP_06699197.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1679] gi|294622907|ref|ZP_06701820.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium U0317] gi|314938083|ref|ZP_07845391.1| response regulator receiver domain protein [Enterococcus faecium TX0133a04] gi|314943605|ref|ZP_07850362.1| response regulator receiver domain protein [Enterococcus faecium TX0133C] gi|314949242|ref|ZP_07852591.1| response regulator receiver domain protein [Enterococcus faecium TX0082] gi|314952608|ref|ZP_07855600.1| response regulator receiver domain protein [Enterococcus faecium TX0133A] gi|314992456|ref|ZP_07857878.1| response regulator receiver domain protein [Enterococcus faecium TX0133B] gi|314997382|ref|ZP_07862337.1| response regulator receiver domain protein [Enterococcus faecium TX0133a01] gi|68194414|gb|EAN08919.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Enterococcus faecium DO] gi|257812851|gb|EEV41609.1| transcriptional regulator [Enterococcus faecium 1,230,933] gi|257818775|gb|EEV46103.1| transcriptional regulator [Enterococcus faecium 1,231,502] gi|257828224|gb|EEV54850.1| transcriptional regulator [Enterococcus faecium 1,231,410] gi|257830813|gb|EEV57420.1| transcriptional regulator [Enterococcus faecium 1,231,408] gi|260074696|gb|EEW63016.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecium C68] gi|260077770|gb|EEW65483.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecium TC 6] gi|289161298|gb|EFD09191.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium D344SRF] gi|291590015|gb|EFF21809.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1071] gi|291591525|gb|EFF23178.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1636] gi|291593940|gb|EFF25424.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1679] gi|291597679|gb|EFF28832.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium U0317] gi|291601354|gb|EFF31632.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1039] gi|291604214|gb|EFF33715.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Enterococcus faecium E1162] gi|313588550|gb|EFR67395.1| response regulator receiver domain protein [Enterococcus faecium TX0133a01] gi|313592998|gb|EFR71843.1| response regulator receiver domain protein [Enterococcus faecium TX0133B] gi|313595276|gb|EFR74121.1| response regulator receiver domain protein [Enterococcus faecium TX0133A] gi|313597723|gb|EFR76568.1| response regulator receiver domain protein [Enterococcus faecium TX0133C] gi|313642572|gb|EFS07152.1| response regulator receiver domain protein [Enterococcus faecium TX0133a04] gi|313644383|gb|EFS08963.1| response regulator receiver domain protein [Enterococcus faecium TX0082] Length = 234 Score = 147 bits (372), Expect = 7e-34, Method: Composition-based stats. Identities = 42/229 (18%), Positives = 86/229 (37%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 +++DD + +G + L D ++ L G ++ Sbjct: 4 ILVVDDEPSIVTLLTFNLEKEGYKVTSATDGGEGLELALEQSFDFIILDVMLPTMDGMEI 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R ++ P++ ++ + + G DD + KP RE+LAR+ AI+RR++ Sbjct: 64 TQRLRQ--EKNETPILMLTAKDDQVDRIIGLEIGADDYLTKPFSPREVLARMKAIFRRIE 121 Query: 121 VSNNRAETGPIRV--------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + V + L +E +L Y M + + + + Sbjct: 122 PRKQSKDEAEPEYLSIGQITADLTNYQVTVDDHLIELTPKEFELLVYFMKRKDRVIDRDT 181 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + I+ FD A + +V+ H+S LR+K+ + + + R GY Sbjct: 182 LLDRIW-NFDFAGQSRIVDVHVSHLREKIERDPKHPKYLVTIRGFGYKF 229 >gi|310828176|ref|YP_003960533.1| hypothetical protein ELI_2588 [Eubacterium limosum KIST612] gi|308739910|gb|ADO37570.1| hypothetical protein ELI_2588 [Eubacterium limosum KIST612] Length = 231 Score = 147 bits (372), Expect = 7e-34, Method: Composition-based stats. Identities = 57/226 (25%), Positives = 89/226 (39%), Gaps = 8/226 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++ DD + A +G E V ++ E Sbjct: 5 LIADDNRQITAVLTAYARKEGFEPVVAYDGEEALAAYRREAPAVILLDVM--MPKLDGFE 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121 + R IR S VP+I I+ + D G DD + KP E++ARV AI RRL Sbjct: 63 VCRQIREESAVPIIMITARGEDFEKIMGLDIGADDYIVKPFSGGEVMARVRAILRRLSRD 122 Query: 122 ---SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + D V GE PL ++E +L L ANR K ++ + A++ Sbjct: 123 GGARLQFFSYRGLTIDLDTYTTTVDGEAIPLTKKETELLWTLAANRQKVFSRDNLLDAVW 182 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSIDWN 223 G +D + V+SHI +LR KL + + + +GY + N Sbjct: 183 G-YDYYGDNRTVDSHIRRLRAKLDKRDHPGWSIATIWGVGYRFEVN 227 >gi|199597665|ref|ZP_03211093.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus rhamnosus HN001] gi|258509808|ref|YP_003172559.1| two-component response regulator [Lactobacillus rhamnosus GG] gi|258540993|ref|YP_003175492.1| two-component response regulator [Lactobacillus rhamnosus Lc 705] gi|199591472|gb|EDY99550.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus rhamnosus HN001] gi|257149735|emb|CAR88708.1| Two-component response regulator [Lactobacillus rhamnosus GG] gi|257152669|emb|CAR91641.1| Two-component response regulator [Lactobacillus rhamnosus Lc 705] Length = 237 Score = 147 bits (372), Expect = 7e-34, Method: Composition-based stats. Identities = 52/230 (22%), Positives = 96/230 (41%), Gaps = 14/230 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + E S D+ ++ L L Sbjct: 5 ILVVDDEKPISDIVKFNLDKEGYDVVTAYDGEEALKKVESESPDLILLDLML--PKIDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 E+ R IR P+I ++ S + + G DD V KP +RE++ARV A RR Sbjct: 63 EVARQIRKEHDTPIIMLTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRTSS 122 Query: 120 --------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 +N E G + + D +GE L RE +L YL + G+ + + Sbjct: 123 ANAAGSEEDEANRELEVGDLTIHPDAYTVSKRGENIELTHREFELLHYLARHLGQVMTRE 182 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + ++G +D + V+ + +LR+K+ + + + ++R +GY + Sbjct: 183 HLLQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPEWLVTRRGVGYYL 231 >gi|261409756|ref|YP_003245997.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261286219|gb|ACX68190.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] Length = 231 Score = 147 bits (372), Expect = 7e-34, Method: Composition-based stats. Identities = 42/226 (18%), Positives = 82/226 (36%), Gaps = 9/226 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + ++G + + E +S + + ++ ++ Sbjct: 5 LIVDDDKEISGLISIYLENEGYRVIQAHDGEEALQAMTSNNGMIDLVILDVMMPKLNGID 64 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH--------REILARVAA 114 R IR +S +P++ +S + +G DD + KP + + Sbjct: 65 TCRRIRENSSIPILMLSAKSEDMDKILGLMTGADDYMIKPFNPLELTTRVKTLLRRSTQY 124 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + ++R + + + G L RE IL L G+ + IF Sbjct: 125 NVDLHQGDSDRIRIDGLDINRTTHEVTANGHAISLTAREFEILYLLARQPGRIFSAEDIF 184 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ V N V HIS LR KL +LG+ + + +GY I Sbjct: 185 QQVWKEK-YYVSNNTVMVHISNLRDKLEKELGYKLIQTVWGVGYKI 229 >gi|159900669|ref|YP_001546916.1| two component transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159893708|gb|ABX06788.1| two component transcriptional regulator, winged helix family [Herpetosiphon aurantiacus ATCC 23779] Length = 232 Score = 147 bits (372), Expect = 7e-34, Method: Composition-based stats. Identities = 50/229 (21%), Positives = 96/229 (41%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V D + F +G ++ S E + D+ ++ L G Sbjct: 4 ILIVDDEPSVVDVVRSRFEREGFAVGETGSGEDALVRLRNETYDLLILDIGL--PGIDGF 61 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R +RA P+I ++ + + G DD V KP RE++ARV A+ RR Sbjct: 62 GVLRQMRAEGFEQPVIMLTARADEVDRVVGLELGADDYVVKPFSPRELVARVRALLRRTA 121 Query: 121 VSNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 ++ + ++ + R + L +E +L YL ++ G+ + Sbjct: 122 EASRLRQQIGDAAPTSSGLQLDNARRRATFRDVQLTLRPKEFDLLAYLASHPGQVFTREV 181 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220 + ++G +DE V+ V+ HI +LR KL + + ++ +GY Sbjct: 182 LLGQVWG-YDEYVDARTVDVHIRRLRSKLSEIDAESNLIQTEWGIGYRF 229 >gi|302529718|ref|ZP_07282060.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. AA4] gi|302438613|gb|EFL10429.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. AA4] Length = 238 Score = 147 bits (372), Expect = 7e-34, Method: Composition-based stats. Identities = 50/221 (22%), Positives = 91/221 (41%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 VL +D + + ++ + E +A D+ ++ L G L Sbjct: 14 IVLAEDDPKQAELVRRYLEHEQHTVTVAPTGEAALAEIRAAEPDLLILDVML--PGMNGL 71 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120 + R IRA S +P++ ++ + L D G DD V KP RE++ARV + R Sbjct: 72 TVCRTIRASSDLPILMLTARSTEDDLLQGLDLGADDYVTKPYSPRELMARVRTLLRRTNA 131 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + G + V + + V G E RILE + + + + Q+ ++G Sbjct: 132 AKDGPLTVGALTVDKEKHEVAVGGNRIETTPGEFRILEVMASRPDQVFTRAQLLEHLHG- 190 Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 FD + + ++ H+ LRKK+ N + + +GY + Sbjct: 191 FDRYITQRAIDVHVMNLRKKIETNPRKPAKLLTVYGVGYKL 231 >gi|266623649|ref|ZP_06116584.1| DNA-binding response regulator ResD [Clostridium hathewayi DSM 13479] gi|288864541|gb|EFC96839.1| DNA-binding response regulator ResD [Clostridium hathewayi DSM 13479] Length = 233 Score = 147 bits (372), Expect = 7e-34, Method: Composition-based stats. Identities = 55/222 (24%), Positives = 107/222 (48%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++ G S+ ++ E L + D++ I ++ Sbjct: 14 ILVVDDEARMRKLVKDFLSVKGFSVLEASNGEEAVDLFFEQK-DIALIILDVMMPKMDGW 72 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120 E R IR +SQVP+I ++ + L F+ GVD+ ++KP + ++ARV AI R Sbjct: 73 ETCRTIRKYSQVPIIMLTARSEERDELQGFNLGVDEYISKPFSPKILVARVEAILRRSNA 132 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 VS++ E G IR+ + G+ L +E +L Y + N+G +++ +I + ++ Sbjct: 133 VSSDLIEIGGIRIDKAAHQVTIDGQNIDLSYKEFELLTYFVENQGIALSREKILNNVW-N 191 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D + +++H+ KLR K+ K D + + +GY + Sbjct: 192 YDYFGDARTIDTHVKKLRSKMGEKG--DYIRTIWGMGYKFEV 231 >gi|326201098|ref|ZP_08190970.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] gi|325988666|gb|EGD49490.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] Length = 233 Score = 147 bits (372), Expect = 7e-34, Method: Composition-based stats. Identities = 44/227 (19%), Positives = 86/227 (37%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G + + + + ++ L Sbjct: 7 ILIVEDDRDINRLIADNLVKEGYCVTSTYDGAAAIEYFEADKFQLVILDIML--PKIGGY 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IR P++ +S + G DD + KP E+ ARV A RR Sbjct: 65 EVLQKIREKGNTPVLILSAKCEETDKIIGLGLGADDYLAKPFGIGELTARVKAQLRRFLK 124 Query: 122 SNNRAE-------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + I + + + +V G L +E IL+ + N K K Q+F Sbjct: 125 FSCEPQLQTQIVRHMDIEMDINTYEVKVGGNSVTLTAKEFEILKLFLKNPKKVFTKNQMF 184 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 +I+G + +EN V HI +LR+K+ + + + +GY + Sbjct: 185 KSIWGE-NYINDENTVMVHIRRLREKIEKDPSNPRYIQTIWGIGYKL 230 >gi|218132752|ref|ZP_03461556.1| hypothetical protein BACPEC_00613 [Bacteroides pectinophilus ATCC 43243] gi|217992478|gb|EEC58481.1| hypothetical protein BACPEC_00613 [Bacteroides pectinophilus ATCC 43243] Length = 238 Score = 147 bits (372), Expect = 7e-34, Method: Composition-based stats. Identities = 46/226 (20%), Positives = 86/226 (38%), Gaps = 11/226 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + + G + E L S ++ ++ L G E Sbjct: 14 LIVEDEESIAELEKDYLELSGFEVTVAKDGESGLNLALSQNFNMIILDLML--PGVDGFE 71 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120 + R +R P+I +S + G DD + KP E++ARV A R + Sbjct: 72 ICRQVREQKNTPIIIVSARKEDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARYQSL 131 Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 +N+ E I++ R V GE +E +L +L N K ++F Sbjct: 132 TSGARSNNDIIEIRGIKIDKTARRVFVNGEEKAFTTKEFDLLTFLAQNPNHVYTKDELFK 191 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220 I+ + + + V HI K+R+K+ +++ +GY Sbjct: 192 EIWDM-ESIGDIATVTVHIKKIREKIEADTSNPQYIETIWGVGYRF 236 >gi|218440527|ref|YP_002378856.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] gi|218173255|gb|ACK71988.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] Length = 250 Score = 147 bits (372), Expect = 7e-34, Method: Composition-based stats. Identities = 46/230 (20%), Positives = 93/230 (40%), Gaps = 12/230 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQS-----SAREDVSAIEAFLIGK 56 ++++D +++D + ++G L+ L + E + L+ Sbjct: 21 ILVVEDEDVIRDMVVLALEEEGYELQSAADGRTALELLQGSDSTESEESFDLLVLDLMLP 80 Query: 57 GEKVLELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 L++ R++ + +P++ +S S + + G DD + KP RE++AR A+ Sbjct: 81 QVNGLDICRLLRYQGNTIPILILSAKVSETDRVLGLEVGADDYLTKPFSMRELVARCRAL 140 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQG----EVFPLPRRERRILEYLMANRGKRVAKT 171 RR S + E + + L +E R+LE M+ + ++ Sbjct: 141 LRRQSFSTISSNPVRKFKDISLYTQECRVLVRGDEINLSPKEFRLLELFMSYPRRVWSRE 200 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 Q+ I+G D + V+ HI LR+KL + + + + R GY Sbjct: 201 QLIEQIWG-PDFLGDTKTVDVHIRWLREKLERDPSQPEYLITVRGFGYRF 249 >gi|152980825|ref|YP_001354044.1| heavy metal response regulator [Janthinobacterium sp. Marseille] gi|151280902|gb|ABR89312.1| heavy metal response regulator [Janthinobacterium sp. Marseille] Length = 223 Score = 147 bits (372), Expect = 7e-34, Method: Composition-based stats. Identities = 42/222 (18%), Positives = 92/222 (41%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + + G ++ L ++ ++ L Sbjct: 3 ILLVEDEVKSGEYLRKGLREAGFVVDWARDGAEGLQLALQESYELVILDVMLPL--LDGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120 +L R +R P++ ++ ++ + + G DD + KP E++ARV + R Sbjct: 61 QLLRELRKVRDTPVLFLTARDEVEDRVKGLELGADDYLVKPFSFMELIARVRTLLRRGPV 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 ++ E +++ R GE L +E +L L RG+ ++++ I S ++ + Sbjct: 121 RESSLIEIADMQIDVMKRRVTRNGERLDLTAKEFSLLHLLAQRRGEVLSRSLIASQVWDM 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + + NVV+ I +LR KL + + + R +GY ++ Sbjct: 181 -NFDSDTNVVDVAIRRLRAKLDDPHPRKLIQTVRGIGYVLEE 221 >gi|148657917|ref|YP_001278122.1| two component transcriptional regulator [Roseiflexus sp. RS-1] gi|148570027|gb|ABQ92172.1| two component transcriptional regulator, winged helix family [Roseiflexus sp. RS-1] Length = 230 Score = 147 bits (372), Expect = 7e-34, Method: Composition-based stats. Identities = 49/225 (21%), Positives = 94/225 (41%), Gaps = 8/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D ++ + +G ++ + D+ ++ L Sbjct: 6 ILLVEDDPILSETLRYNLEREGYAVINAPDGVVGLERARRDQPDMVILDVML--PRLDGF 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + RI+R S+VP++ ++ + + G DD V KP E+LARV AI RR Sbjct: 64 SVCRILRQESEVPILILTARQDEIDRIAGLELGADDYVAKPFSLGELLARVRAIMRRSDR 123 Query: 122 S----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + G IR+ + R L ++E +L LM NRG +++ + + Sbjct: 124 RISALREVLDAGAIRLDTGSRRAWRDDVELNLSQKEFDLLACLMRNRGIALSRDVLLERV 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 +G +D + V+ HI LR+K+ + + + R +GY + Sbjct: 184 WG-YDFLGDSRTVDVHIRWLREKVEPDPGKPTYIQTVRGIGYRFE 227 >gi|15613383|ref|NP_241686.1| two-component response regulator [Bacillus halodurans C-125] gi|10173434|dbj|BAB04539.1| two-component response regulator [Bacillus halodurans C-125] Length = 234 Score = 147 bits (372), Expect = 7e-34, Method: Composition-based stats. Identities = 46/228 (20%), Positives = 86/228 (37%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D + + +G + E L D+ ++ L + Sbjct: 6 ILLIEDDVSISEMVKEHLQLEGYHVCCAFDGEEATRLFEQNTYDLVLLDLML--PRRNGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARVA 113 + + IR S VP++ +S S G DD + KP E I V Sbjct: 64 DCLQWIRTKSVVPVLIMSAKDSDVDKALGLGFGADDYITKPFSMIELTARVKAAIRRTVN 123 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 N R + + V + +GE L +E +IL+ + + K K Q+ Sbjct: 124 YAQASQSAENERIKIHELVVELSSFTVKKKGEEIKLTAKEFQILKLFVTHPKKVFTKEQL 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + +++ D +ENV+ HI +LR+K+ + + + +GY + Sbjct: 184 YRSVW-NDDYYSDENVINVHIRRLREKIEDTPSKPQYIKTIWGIGYRM 230 >gi|307702057|ref|ZP_07639064.1| VncR, response regulator [Streptococcus mitis NCTC 12261] gi|307616544|gb|EFN95734.1| VncR, response regulator [Streptococcus mitis NCTC 12261] Length = 218 Score = 147 bits (372), Expect = 8e-34, Method: Composition-based stats. Identities = 50/220 (22%), Positives = 101/220 (45%), Gaps = 6/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++++G D G + L+ + +V+ + + L Sbjct: 3 ILIVEDEEMIREGISDYLTDCGYETIEAADGQEA--LEKFSSYEVALVLLDIQMPKLNGL 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ IR SQVP++ ++ + + + F S D + KP + RV AI++R Sbjct: 61 EVLAEIRKTSQVPVLMLTAFQDEEYKMSAFASLADGYLEKPFSLSLLKVRVDAIFKRYYD 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + +V + + GE + +E IL+YL+ N G+ + ++QI A++ Sbjct: 121 TGRIFSYKDTKVDFESYSASLAGEEVAVNAKELEILDYLVKNEGRALTRSQIIDAVWKAT 180 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 DE + V++ +I +LRKKL D + + R +GY ++ Sbjct: 181 DEVPFDRVIDVYIKELRKKLDL----DCILTVRNVGYKLE 216 >gi|300855893|ref|YP_003780877.1| putative response regulator [Clostridium ljungdahlii DSM 13528] gi|300436008|gb|ADK15775.1| predicted response regulator [Clostridium ljungdahlii DSM 13528] Length = 228 Score = 147 bits (372), Expect = 8e-34, Method: Composition-based stats. Identities = 39/220 (17%), Positives = 87/220 (39%), Gaps = 3/220 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 L++D + + L +G ++ + + + + D++ I+ L Sbjct: 4 IFLVEDDKEIAKNLVLLLRSEGFTVTHAPTRSDALAMLAGNKFDLALIDISL--PDGNGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + I+ VP+I ++ + + + G DD + KP RE++AR+ R+ Sbjct: 62 TVCTEIKEIQDVPVIFLTASGDEASVVTGLNMGADDYITKPFRPRELIARIRTALRKSGR 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 S + E + + + L E R+L + N + + ++ ++ Sbjct: 122 SPSAFEVCGLHIDMASGVVKKDDSEVFLSALEYRLLLVFINNPKSIITRGRLLDELWDAA 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 E V +N + +I +LR+K+ N + + R GY + Sbjct: 182 GEFVNDNTLTVYIKRLREKIENNPASPQIILTVRGTGYRL 221 >gi|282896029|ref|ZP_06304060.1| Two component Transcriptional regulator, Winged helix family [Raphidiopsis brookii D9] gi|281199139|gb|EFA74009.1| Two component Transcriptional regulator, Winged helix family [Raphidiopsis brookii D9] Length = 250 Score = 147 bits (372), Expect = 8e-34, Method: Composition-based stats. Identities = 45/229 (19%), Positives = 91/229 (39%), Gaps = 12/229 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQS-----SAREDVSAIEAFLIGKG 57 ++++D L+++ + +G + L S + L+ Sbjct: 22 LIVEDEELIREMLVVALEGEGYEVVTAKDGRCAVELMRNLETQSGELSFDLLVLDLMLPQ 81 Query: 58 EKVLELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 L++ R++ + +P++ +S S + + G DD + KP RE++AR A+ Sbjct: 82 INGLDICRLLRHQGNSIPILILSAKGSETDRVLGLEVGADDYLTKPFSMREMVARCRALL 141 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQG----EVFPLPRRERRILEYLMANRGKRVAKTQ 172 RR + SN + E + L +E R+LE M+ + ++ Q Sbjct: 142 RRQRFSNLPLIPTLKYKDINLNPQECRVLVRGREVSLSPKEFRLLELFMSYARRVWSREQ 201 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + ++G D + V+ HI LR+KL + + + + R GY Sbjct: 202 LLDQVWG-PDFVGDSKTVDVHIRWLREKLELDPSHPEYIVTVRGFGYRF 249 >gi|227832502|ref|YP_002834209.1| two-component system response regulator [Corynebacterium aurimucosum ATCC 700975] gi|262183632|ref|ZP_06043053.1| two-component system response regulator [Corynebacterium aurimucosum ATCC 700975] gi|227453518|gb|ACP32271.1| two-component system response regulator [Corynebacterium aurimucosum ATCC 700975] Length = 228 Score = 147 bits (372), Expect = 8e-34, Method: Composition-based stats. Identities = 41/221 (18%), Positives = 86/221 (38%), Gaps = 6/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + +G+ N D+ ++ L G + Sbjct: 5 ILVVDDDPAIAEMLTIVLEAEGLEPIAVNDGNEAIPAFREHDPDLILLDLML--PGMNGV 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R IR S VP++ ++ + +SG DD + KP +E++AR+ A RR+ Sbjct: 63 DICRAIRTESSVPIVMLTAKTDTVDVVLGLESGADDYITKPFKPKELIARIRARLRRIDG 122 Query: 122 SNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + GE L E +L + G+ + + +++G Sbjct: 123 GTGEIIEVGDLLIDVPEHTVTRKGGEEISLTPLEFDLLLEMARKPGQVHTREALLESVWG 182 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVD-SKRFLGYS 219 + A + +V H+ +LR K+ + + + R +GY Sbjct: 183 -YRHASDTRLVNVHVQRLRAKIEHDPEDPHIVLTVRGVGYK 222 >gi|218291330|ref|ZP_03495290.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius LAA1] gi|218238776|gb|EED05990.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius LAA1] Length = 221 Score = 147 bits (372), Expect = 8e-34, Method: Composition-based stats. Identities = 51/220 (23%), Positives = 97/220 (44%), Gaps = 5/220 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + + GV ++ E S D+ ++ L G ++ Sbjct: 4 LIVEDEPGLVEFLRLELELSGVEVDVAMDAETALERARSQAYDLLLVDIVL--PGMSGVD 61 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R +R S VP++ ++ ++ + D+G DD + KP E+ AR+ AI RR + + Sbjct: 62 LCREVRRFSNVPIMMLTARGAVADRVGGLDAGADDYLVKPFAIEELWARIRAIRRRYEAN 121 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 G V D +G+ L RE +L YL+ N + ++ ++ ++G F Sbjct: 122 GAPFRFGEATVHLDAHRVVYRGQEVDLTAREYDLLLYLLRNVNRTCSRQELLERVWG-FQ 180 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + NVV+ +I LR+KL + + R GY ++ Sbjct: 181 APGDTNVVDVYIGYLRQKL--DPERRYIKTVRGQGYRLEV 218 >gi|27376207|ref|NP_767736.1| phosphate regulon, two-component response regulator [Bradyrhizobium japonicum USDA 110] gi|2769532|emb|CAA11074.1| phosphate regulatory protein [Bradyrhizobium japonicum] gi|27349347|dbj|BAC46361.1| phosphate regulon, two-component response regulator [Bradyrhizobium japonicum USDA 110] Length = 235 Score = 147 bits (372), Expect = 8e-34, Method: Composition-based stats. Identities = 51/225 (22%), Positives = 94/225 (41%), Gaps = 8/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + DG +E + + D+ ++ L G + Sbjct: 5 IMVVEDEEALTELLRYNLEGDGYDVETVMRGDDADTRLKEHIPDLIVLDWML--PGLSGI 62 Query: 62 ELPRII---RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IY 116 EL R + Q+P+I ++ + +G DD + KP E+LARV Sbjct: 63 ELCRRLRTRPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLLRR 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + G I + D R G L E R+LE+ + + G+ ++ Q+ + Sbjct: 123 ASPERLATVLAYGDIELDRDKRRVARSGRPIDLGPTEYRLLEFFLEHPGRVFSREQLLDS 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G D ++E V+ HI +LRK L DP+ + R GY++D Sbjct: 183 VWGR-DIYIDERTVDVHIGRLRKLLNLGREQDPIRTVRGAGYALD 226 >gi|119718738|ref|YP_925703.1| response regulator receiver [Nocardioides sp. JS614] gi|119539399|gb|ABL84016.1| response regulator receiver [Nocardioides sp. JS614] Length = 234 Score = 147 bits (372), Expect = 8e-34, Method: Composition-based stats. Identities = 45/223 (20%), Positives = 95/223 (42%), Gaps = 8/223 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD V++ +G + S+A DV ++ LE Sbjct: 12 LVVDDDKAVRESLRRSLEFNGYEVVLAADGAEALAGISAAAPDVVVMDVM--MPRLDGLE 69 Query: 63 LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 R +R A + +P++ ++ ++ ++ D+G DD + KP +E+LAR+ A+ RR+ Sbjct: 70 TTRALRTAGNDLPILVLTARDAVGDRVEGLDAGADDYLTKPFALQELLARLRALLRRVVP 129 Query: 122 SNNRAETGPIR----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + + R+ V L R E +LE + + + ++ I + Sbjct: 130 HEDATDEMLSFSDLSMDVGTREVRRGERVIELTRTEFALLEMFLRRPRRVLERSFILEEV 189 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G +D N +E ++ LR+K + + + R +GY + Sbjct: 190 WG-YDFPTTANSLEVYVGYLRRKTEAEGEARLIHTVRGVGYVL 231 >gi|299536837|ref|ZP_07050144.1| DNA-binding response regulator [Lysinibacillus fusiformis ZC1] gi|298727661|gb|EFI68229.1| DNA-binding response regulator [Lysinibacillus fusiformis ZC1] Length = 228 Score = 147 bits (372), Expect = 8e-34, Method: Composition-based stats. Identities = 40/228 (17%), Positives = 88/228 (38%), Gaps = 10/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D + + +G +++ + E D+ ++ L G Sbjct: 4 ILLIEDEVSIAELQRDYLEINGFTVDIQHHGEDGLQQALKGNYDLIILDIML--PGISGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115 ++ + IRA +P++ +S + G DD + KP E+ Sbjct: 62 DICKQIRAVHNMPILFVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHLSRYER 121 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + +N+ I + + R V GE +E +L + + + + ++K Q++ Sbjct: 122 LATHQQTNHMMSIHGITIDTSARKVFVNGEEIAFTTKEFDLLVFFVRHPNQVLSKEQLYE 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 +G ++ A + + V HI KLR+K+ +++ GY + Sbjct: 182 RNWG-YESAADVSTVTVHIRKLREKIEREPAHPKFLETVWGAGYRFNV 228 >gi|194333603|ref|YP_002015463.1| winged helix family two component transcriptional regulator [Prosthecochloris aestuarii DSM 271] gi|194311421|gb|ACF45816.1| two component transcriptional regulator, winged helix family [Prosthecochloris aestuarii DSM 271] Length = 236 Score = 147 bits (372), Expect = 8e-34, Method: Composition-based stats. Identities = 46/227 (20%), Positives = 92/227 (40%), Gaps = 12/227 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + G + S E L S D+ ++ L G Sbjct: 6 ILVVEDDHNLAKLLKYNLEKAGYKCQHALSGEEALDLLKSKSYDIMLLDIML--PGMDGF 63 Query: 62 ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA----A 114 E+ R +R H P+I ++ + F+ G+DD V KP RE+ R+ Sbjct: 64 EVCRKVRQHQLYKDLPIIMLTAKGEEIDKVLGFELGIDDYVVKPFSPRELNLRIRAILKR 123 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 R + + V ++G L E ++L L+ RG+ ++ + Sbjct: 124 DRRGKREIQEVMTCDGLEVDISRHRVSLEGRELTLTLMEFKLLVVLLKRRGQAQSRETLL 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 S ++ + D+++ +++HI++LR+KL + + R LGY ++ Sbjct: 184 SDVWDV-DKSINTRTIDTHITRLREKLGQTG--RLIKTVRGLGYKLE 227 >gi|294679014|ref|YP_003579629.1| phosphate regulon transcriptional regulatory protein PhoB [Rhodobacter capsulatus SB 1003] gi|294477834|gb|ADE87222.1| phosphate regulon transcriptional regulatory protein PhoB [Rhodobacter capsulatus SB 1003] Length = 230 Score = 147 bits (372), Expect = 8e-34, Method: Composition-based stats. Identities = 45/221 (20%), Positives = 90/221 (40%), Gaps = 4/221 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVL 61 ++++D + ++ +G + + + + D+ ++ L G ++ Sbjct: 10 LVVEDESAQREVLQYNLEAEGFRVVMAVNGDEALLFLREEKPDLVVLDWMLPNVSGIEIC 69 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + +P+I +S + ++G DD V KP E++AR+ RR + Sbjct: 70 RRVKANPETRSIPIIMLSARSEESDRVRGLETGADDYVVKPYSVVELMARLRTQLRRTRP 129 Query: 122 SNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + I + + G+ L E R+L LM G+ + Q+ ++G Sbjct: 130 ATMGERLVFDDIILDAAEHRVFRDGQPLKLGPTEFRLLSTLMEKPGRVWTRDQLLDRVWG 189 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D V+ ++ H+ +LRK L G DPV + R GYS+ Sbjct: 190 R-DIYVDTRTIDVHVGRLRKALMVNGGADPVRTVRGTGYSL 229 >gi|206891042|ref|YP_002248007.1| DNA-binding response regulator [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742980|gb|ACI22037.1| DNA-binding response regulator [Thermodesulfovibrio yellowstonii DSM 11347] Length = 229 Score = 147 bits (372), Expect = 8e-34, Method: Composition-based stats. Identities = 48/227 (21%), Positives = 98/227 (43%), Gaps = 10/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + + + E D+ ++ L G + L Sbjct: 5 ILIVEDEKEIAELIAYSLKKEKYDISIALDGETALKKLRETVYDLVILDLML--PGIQGL 62 Query: 62 ELPRIIRAHSQVP---LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 E+ +IIR +S + +I ++ + ++G DD + KP RE++ARV A+ RR Sbjct: 63 EICKIIRNNSNMQKTGIIIVTAKSEEFDKITGLETGADDYITKPFSPRELIARVKAVMRR 122 Query: 119 LKV---SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 +N + + + + V+G+ L E ++L YL K ++ + Sbjct: 123 TLPAVSNNQIIKIKDLIIDKEKYLVTVKGQPKRLSATEFKLLLYLAERPNKIFSRDHLLD 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 A++G D V+ V+ HI +LR K+ + + + + R +GY I+ Sbjct: 183 AVWGQ-DIYVDPRTVDVHIRRLRLKIEDYPDNPEYIKTLRGIGYYIE 228 >gi|254430407|ref|ZP_05044110.1| two-component response regulator, phosphate [Cyanobium sp. PCC 7001] gi|197624860|gb|EDY37419.1| two-component response regulator, phosphate [Cyanobium sp. PCC 7001] Length = 238 Score = 147 bits (372), Expect = 8e-34, Method: Composition-based stats. Identities = 45/234 (19%), Positives = 90/234 (38%), Gaps = 16/234 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEE-WLQSSAREDV---------SAIEA 51 ++++D +++ +G S+ + LQ SAR + + Sbjct: 5 LLVVEDDETIRETLQEALELEGFSVTACANGRDALNALQRSARPQPGRDDPGEGFALVVL 64 Query: 52 FLIGKGEKVLELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--- 107 L+ G L++ R +RA S P++ +S S + + G DD + KP RE Sbjct: 65 DLMLPGLGGLDVCRALRAASNFTPILVVSARDSETDRVLGLEVGADDYLVKPFGMRELVA 124 Query: 108 ILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167 + + E I+++ + G L +E R+LE M + + Sbjct: 125 RCRALLRRSASQGAAEKVLEHANIKLYQEECRVTRDGLPVNLSPKEYRLLELFMQHPRRV 184 Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220 ++ ++ ++G+ D + V+ HI LR+K+ + + R GY Sbjct: 185 WSRDKLLEHVWGV-DYFGDSKTVDVHIRWLREKIEEEPSAPCHLVTVRGFGYRF 237 >gi|121535017|ref|ZP_01666835.1| two component transcriptional regulator, winged helix family [Thermosinus carboxydivorans Nor1] gi|121306430|gb|EAX47354.1| two component transcriptional regulator, winged helix family [Thermosinus carboxydivorans Nor1] Length = 231 Score = 147 bits (372), Expect = 8e-34, Method: Composition-based stats. Identities = 43/222 (19%), Positives = 87/222 (39%), Gaps = 7/222 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + A F DG + + D+ ++ L G E Sbjct: 7 LIVDDDVKIAALLKAYFEKDGFITYIAHDGYQALDKIREQKPDIVVLDLML--PGIDGWE 64 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRRL 119 + R R +P++ ++ L + G DD V KP RE++ARV ++ Sbjct: 65 VCRRARKIGDIPILMLTARDEEADRLIGLEMGADDYVTKPFSAREVVARVRAILRRSHKI 124 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + G + + ++ E+ + E +IL+ L N+G+ ++ Q+ + G Sbjct: 125 AAQPEPIKVGNLLIDAERHVIIKDDEILDMTPTEFKILQLLATNKGRVFSRLQLIEQVQG 184 Query: 180 LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + E ++ HI +R+K+ N + + +GY Sbjct: 185 -YASEGYERTIDVHIKNIRRKIENNPKEPKYIITVYGVGYKF 225 >gi|25027325|ref|NP_737379.1| putative sensor kinase [Corynebacterium efficiens YS-314] gi|259506537|ref|ZP_05749439.1| DNA-binding response regulator [Corynebacterium efficiens YS-314] gi|23492606|dbj|BAC17579.1| putative sensor kinase [Corynebacterium efficiens YS-314] gi|259165957|gb|EEW50511.1| DNA-binding response regulator [Corynebacterium efficiens YS-314] Length = 226 Score = 147 bits (372), Expect = 8e-34, Method: Composition-based stats. Identities = 44/220 (20%), Positives = 85/220 (38%), Gaps = 5/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + +G + D+ ++ L G + Sbjct: 5 ILVVDDDPAISEMLTIVLSAEGFDTVAVTDGALAVETAEREQPDLILLDLML--PGMNGI 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R IR S VP+I ++ + +SG DD VNKP +E++AR+ A RR Sbjct: 63 DICRAIRQDSAVPIIMLTAKTDTVDVVLGLESGADDYVNKPFKAKELVARIRARLRRTDD 122 Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + G + E L E +L L + + ++ ++G Sbjct: 123 EPAETLEVGDLTIDVPGHTVKRGDEEISLTPLEFDLLLELARKPQQVFTREELLGKVWG- 181 Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219 + A + +V H+ +LR K+ + V + R +GY Sbjct: 182 YRHASDTRLVNVHVQRLRAKIEKDPENPQIVLTVRGVGYK 221 >gi|323359211|ref|YP_004225607.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Microbacterium testaceum StLB037] gi|323275582|dbj|BAJ75727.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Microbacterium testaceum StLB037] Length = 230 Score = 147 bits (372), Expect = 8e-34, Method: Composition-based stats. Identities = 44/222 (19%), Positives = 85/222 (38%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++D I G + + D+ ++ L Sbjct: 6 ILVVDDEPNIRDLLITSLRFAGFQVRAVANGAQTISAVLEEEPDLIVLDVML--PDMNGF 63 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI--HHREILARVAAIYRR 118 + + +R A P++ ++ + + ++G DD V KP + Sbjct: 64 SVTKRLRGAGYTAPILFLTAKDETEDKIMGLNAGGDDYVTKPFSLDEIVARIQAILRRTM 123 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + TG + + D D V L E ++L YLM N + ++K QI ++ Sbjct: 124 QADEESIIRTGELTMDQDTHDVSVGDVSIDLSPTEFKLLRYLMLNPNRVLSKAQILDHVW 183 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D + +VES+IS LR+K+ + +KR GY + Sbjct: 184 -EYDFNGDAGIVESYISYLRRKIDPHSSEPLIQTKRGFGYML 224 >gi|294635418|ref|ZP_06713908.1| phosphate regulon transcriptional regulatory protein PhoB [Edwardsiella tarda ATCC 23685] gi|291091207|gb|EFE23768.1| phosphate regulon transcriptional regulatory protein PhoB [Edwardsiella tarda ATCC 23685] Length = 237 Score = 147 bits (372), Expect = 8e-34, Method: Composition-based stats. Identities = 38/222 (17%), Positives = 90/222 (40%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D +++ + +G S + D+ ++ L G G ++ Sbjct: 13 ILVVEDETPIREMVSFVLEQNGYQPLEAESYDGALSRLCEPYPDLILLDWMLPGGSGIQL 72 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ + A +P++ ++ + + + G DD + KP +E++AR+ A+ RR+ Sbjct: 73 IKHLKREPATRDIPVMMLTARGEEEDRVRGLEVGADDYIIKPFSPKELVARIKAVMRRIS 132 Query: 121 VSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + E ++L + M + + ++ Q+ + ++ Sbjct: 133 PMALEETITLQGLSLDPVSHRVMADEAPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVW 192 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G + VE+ V+ HI +LRK L + V + R GY Sbjct: 193 GT-NVYVEDRTVDVHIRRLRKALESSGHDRMVQTVRGTGYRF 233 >gi|251788826|ref|YP_003003547.1| DNA-binding transcriptional regulator BaeR [Dickeya zeae Ech1591] gi|247537447|gb|ACT06068.1| two component transcriptional regulator, winged helix family [Dickeya zeae Ech1591] Length = 243 Score = 147 bits (372), Expect = 8e-34, Method: Composition-based stats. Identities = 48/223 (21%), Positives = 86/223 (38%), Gaps = 7/223 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + + G E E + ++ L G L Sbjct: 17 LIVEDEPKLAQLLVDYLQASGYRTHWLTQGEEVEPWVREHPCQLILLDLML--PGRDGLT 74 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R IR S VP+I ++ L + G DD + KP RE++ARV + RR + Sbjct: 75 LCRAIRGFSNVPIIMVTARSDEIDRLLGLEIGADDYICKPYSPREVVARVKTLLRRCRWQ 134 Query: 123 NNRAETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + + + G L E R+L+ L A G+ ++ Q+ +Y Sbjct: 135 HEPLPNDALPALLIDQNRYQASYLGRHLELTPAEFRLLKTLSAEPGRVFSREQLLDHLYD 194 Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + V + ++SHI LR+KL + + +GY + Sbjct: 195 DY-RVVTDRTIDSHIKNLRRKLEMFDRETSFIRTVYGIGYRWE 236 >gi|257057242|ref|YP_003135074.1| response regulator with CheY-like receiver domain-containing protein and winged-helix DNA-binding domain-containing protein [Saccharomonospora viridis DSM 43017] gi|256587114|gb|ACU98247.1| response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein [Saccharomonospora viridis DSM 43017] Length = 229 Score = 147 bits (372), Expect = 8e-34, Method: Composition-based stats. Identities = 44/225 (19%), Positives = 92/225 (40%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V++ +G ++ + ++ R D ++ L Sbjct: 3 ILVVDDDRAVRESLRRSLQFNGYQVDLASDGAQALEKVATDRPDAMVLDVM--MPRLDGL 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +R+ P++ ++ ++ + D+G DD + KP E+LAR+ A+ RR Sbjct: 61 EVARRLRSVGDDLPILVLTARDAVSDRVAGLDAGADDYLPKPFALEELLARLRALLRRAG 120 Query: 121 VSNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 +T + + R+ L R E +LE M +A+++I Sbjct: 121 QEGASGDTDVLTFADLTLNPNTREVTRGDRSISLTRTEFSLLELFMTYPKHVLARSRILE 180 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G +D N +E ++ LR+K + + R +GY + Sbjct: 181 EVWG-YDFPTSGNALEVYVGYLRRKTEAGGEPRLIHTVRGVGYVL 224 >gi|229551746|ref|ZP_04440471.1| response regulator [Lactobacillus rhamnosus LMS2-1] gi|258507899|ref|YP_003170650.1| two-component response regulator [Lactobacillus rhamnosus GG] gi|258539145|ref|YP_003173644.1| two-component response regulator [Lactobacillus rhamnosus Lc 705] gi|229314877|gb|EEN80850.1| response regulator [Lactobacillus rhamnosus LMS2-1] gi|257147826|emb|CAR86799.1| Two-component response regulator [Lactobacillus rhamnosus GG] gi|257150821|emb|CAR89793.1| Two-component response regulator [Lactobacillus rhamnosus Lc 705] gi|259649226|dbj|BAI41388.1| two-component response regulator [Lactobacillus rhamnosus GG] Length = 234 Score = 147 bits (372), Expect = 8e-34, Method: Composition-based stats. Identities = 44/230 (19%), Positives = 85/230 (36%), Gaps = 13/230 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + +E + S D ++ L L Sbjct: 4 ILIVDDEPAILTLLQYNLEAEHYQVETATDGQEALDKVRSEPFDFIILDLML--PSLSGL 61 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARV 112 ++ R IR P++ ++ + + + G DD V KP REI Sbjct: 62 DVTRKIREEKIQTPIMILTAKDNETDKIVGLELGADDYVTKPFSPREIIARIKAIERRSQ 121 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + L + N+ G I + + G L +E +L Y GK +++ Sbjct: 122 SQPQAPLPGNANQITVGQITIDPENYKASKAGHRLQLTPKEFELLVYFAQRVGKTLSRDA 181 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 + + ++G FD E +V+ +S LR K+ + D + + R GY ++ Sbjct: 182 LLNGVWG-FDYPAETRMVDIQVSHLRDKIETDPKHPDYLKTVRGFGYQME 230 >gi|266619604|ref|ZP_06112539.1| DNA-binding response regulator ResD [Clostridium hathewayi DSM 13479] gi|288868826|gb|EFD01125.1| DNA-binding response regulator ResD [Clostridium hathewayi DSM 13479] Length = 229 Score = 147 bits (372), Expect = 8e-34, Method: Composition-based stats. Identities = 49/227 (21%), Positives = 86/227 (37%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + + G +E N E D+ ++ L G Sbjct: 4 ILIIEDEESIAELEKDYLELSGFEVEIENDGEAGLAKALHEDFDLLILDLML--PGVDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 E+ R +R P+I +S + G DD + KP E++ARV A R + Sbjct: 62 EICRKVREVKNTPIIMVSAKKEDIDKIRGLGLGADDYITKPFSPSEMVARVKAHLARYER 121 Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N E +++ R V GE +E +L +L N K ++F Sbjct: 122 LIGSGTPDNEIVEIRGLKIDKTARRVWVNGEEKSFTTKEFDLLTFLAQNPNHVFTKEELF 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 S I+ + + + V HI K+R+K+ N +++ +GY Sbjct: 182 SKIWDM-ESIGDIATVTVHIKKIREKIEFNTAKPQYIETIWGVGYRF 227 >gi|315646922|ref|ZP_07900037.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] gi|315277852|gb|EFU41176.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] Length = 231 Score = 147 bits (372), Expect = 8e-34, Method: Composition-based stats. Identities = 44/228 (19%), Positives = 91/228 (39%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + F +G + ++ L + + ++ L G Sbjct: 5 ILIIEDETTIAQLERDYFELNGFFADLCHTGNEGLHLALNEDYSLIVVDLQL--PGMNGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR--------EILARVA 113 EL R IR + +VP++ +S + F+ G DD + KP ++ Sbjct: 63 ELCRQIRKNKEVPILIVSAKNEEIDKIRAFNLGADDYITKPFSPSELVARAKAHLMRYKR 122 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + ++ V N + + R V+ + RE +LE+L ++ + +K ++ Sbjct: 123 LMGKQETVQNAEIHIRGLVIDKSARRVYVRNQEVVFTTREFNLLEFLASHPNRVFSKNEL 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 F I+G+ D + + V H+ KLR+KL + +++ GY Sbjct: 183 FERIWGM-DSSGDIATVTVHVRKLREKLELDSSNPQYIETVWGAGYRF 229 >gi|229085934|ref|ZP_04218158.1| DNA-binding response regulator [Bacillus cereus Rock3-44] gi|228697370|gb|EEL50131.1| DNA-binding response regulator [Bacillus cereus Rock3-44] Length = 223 Score = 147 bits (372), Expect = 8e-34, Method: Composition-based stats. Identities = 41/221 (18%), Positives = 90/221 (40%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L DD +++ +G + + + + ++ ++ Sbjct: 4 ILLADDDKHIRELLHYHLQKEGYKVFEAEDGKVAQSILEKENIHLALVDIM--MPFVDGY 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L IR + +P+I ++ L F SG DD + KP E++ R+ A+ RR ++ Sbjct: 62 TLCEEIRKYHDIPVILLTAKDQLVDKEKGFVSGTDDYIVKPFEPAEVIFRMKALLRRYQM 121 Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + T + + + + LP +E +L L G+ ++ ++ ++G+ Sbjct: 122 LSADVITLHGTTIDRKSFEVKCNDQTILLPLKEFELLSQLAGYPGRTFSREELIELVWGI 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D +E V+ HI +LR + + + + R LGY ++ Sbjct: 182 -DFEGDERTVDVHIKRLRDRFSKRTDDFQIKTVRGLGYKLE 221 >gi|86138909|ref|ZP_01057481.1| phosphate regulon transcriptional regulatory protein PhoB [Roseobacter sp. MED193] gi|85824556|gb|EAQ44759.1| phosphate regulon transcriptional regulatory protein PhoB [Roseobacter sp. MED193] Length = 229 Score = 147 bits (372), Expect = 8e-34, Method: Composition-based stats. Identities = 50/221 (22%), Positives = 89/221 (40%), Gaps = 4/221 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61 ++I+D ++ DG + + E L D+ ++ + G +V Sbjct: 9 LIIEDELAQREVLAYNLEADGFRVIRAENGEEGLLLVEEDMPDIIVLDWMMPNLSGIEVC 68 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + +P+I +S + ++G DD V KP E++ARV RR++ Sbjct: 69 RRLKTRPETRGIPIIMLSARSEEVDKVRGLETGADDYVVKPYSVIELMARVRTQLRRVRP 128 Query: 122 SNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S I + ++ L E R+L M G+ ++ Q+ ++G Sbjct: 129 STVGMRLEFDDIILDAETHKVSRSDNSLKLGPTEFRLLSTFMEKPGRVWSREQLLDRVWG 188 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D V+ V+ HI +LRK L G DPV + R GY++ Sbjct: 189 R-DIYVDTRTVDVHIGRLRKALTQFGGADPVRTVRGAGYAL 228 >gi|319653806|ref|ZP_08007901.1| hypothetical protein HMPREF1013_04520 [Bacillus sp. 2_A_57_CT2] gi|317394532|gb|EFV75275.1| hypothetical protein HMPREF1013_04520 [Bacillus sp. 2_A_57_CT2] Length = 228 Score = 147 bits (372), Expect = 8e-34, Method: Composition-based stats. Identities = 48/228 (21%), Positives = 93/228 (40%), Gaps = 10/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D + + + ++ +S E D+ ++ L G Sbjct: 4 ILLIEDDISIAELQRDYLEINKFRVDIQHSGEEGLQKALQEHYDLIILDIML--PGVNGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 E+ + IRA +P++ +S + G DD + KP E++ARV A R Sbjct: 62 EICKQIRAVKNIPILFVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHLERYER 121 Query: 120 ----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + N I + R + GE P +E +L +L+ + + ++K Q++ Sbjct: 122 LAGKQTQTNTIFVHGITIDKSARKVYIDGEETPFTTKEFDLLVFLLMHPNQVLSKEQLYE 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 I+GL + A + + V HI K+R K+ + +++ GY + Sbjct: 182 KIWGL-ESAADVSTVTVHIRKIRGKIEGDPAQPKFLETVWGAGYRFNV 228 >gi|227820734|ref|YP_002824704.1| phosphate regulon transcriptional regulatory protein PhoB [Sinorhizobium fredii NGR234] gi|227339733|gb|ACP23951.1| phosphate regulon transcriptional regulatory protein PhoB [Sinorhizobium fredii NGR234] Length = 227 Score = 147 bits (372), Expect = 8e-34, Method: Composition-based stats. Identities = 46/225 (20%), Positives = 93/225 (41%), Gaps = 8/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++D + +G ++ + E D+ ++ L G + Sbjct: 5 IAVVEDEEALSVLLRYNLEAEGFEVDTILRGDEAEIRLQERLPDLLILDWML--PGVSGI 62 Query: 62 ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL--ARVAAIY 116 EL R +R + P+I ++ + +G DD V KP E++ + Sbjct: 63 ELCRRLRQRPETERLPIIMLTARGEESERVRGLATGADDYVVKPFSTPELMARVKAMLRR 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + +V + G I + + + L E R+LE+LM++ G+ +++Q+ Sbjct: 123 AKPEVLSTVLRCGDIELDRETHRVHRRSREVRLGPTEFRLLEFLMSSPGRVFSRSQLLDG 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G D V+E V+ H+ +LRK L D + + R GYS++ Sbjct: 183 VWG-HDIYVDERTVDVHVGRLRKALNFSNMPDVIRTVRGAGYSLE 226 >gi|83642976|ref|YP_431411.1| response regulator [Hahella chejuensis KCTC 2396] gi|83631019|gb|ABC26986.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Hahella chejuensis KCTC 2396] Length = 222 Score = 147 bits (372), Expect = 8e-34, Method: Composition-based stats. Identities = 51/221 (23%), Positives = 92/221 (41%), Gaps = 6/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G + + + D+ ++ L G L Sbjct: 6 ILIVEDEPKLASLLKDYLQQEGYQCDIIGDGQQALERIRAEAPDLILLDLML--PGLDGL 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R R + P+I ++ L + G DD V KP RE++ARV AI RR++ Sbjct: 64 SVCREARRFTDAPIIMVTARVEEIDRLLGLELGADDYVCKPFSPREVVARVKAILRRVRG 123 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + E + + ++G+ L E ++L+ L G+ +++Q+ IY Sbjct: 124 AP--VEERALMLDPSRYRAVLRGKPLELTAIEFQLLKILADEPGRIFSRSQLMDGIY-QD 180 Query: 182 DEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221 V + V+SHI KLRKK+ D + S LGY + Sbjct: 181 HRIVSDRTVDSHIKKLRKKMTELFPDQDYIHSVYGLGYKYE 221 >gi|226309596|ref|YP_002769490.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226092544|dbj|BAH40986.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 229 Score = 147 bits (372), Expect = 8e-34, Method: Composition-based stats. Identities = 54/222 (24%), Positives = 93/222 (41%), Gaps = 10/222 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++DD ++ A +G S E L+ D+ ++ L G Sbjct: 6 IAIVDDDINIRQIVEAYLQKEGYVTTAIESAEEAITLEQENPPDLWVLDIML--PGMNGY 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E R IRA S+ P+I +S + + G DD + KP RE++ARV +R K Sbjct: 64 EFCRRIRAGSETPIIMVSARDEEVDKILGLELGSDDYLTKPFSPRELVARVNRALQRWKQ 123 Query: 122 SNNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + AE I + R GE + +E ++L L + + ++ ++ S I+ Sbjct: 124 MKSHAEQTAISALVLDKEKRLVYSFGEEVEVTSKEFQVLSLLSEHPNRAFSRDELLSLIW 183 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G FD + VV+ I ++RKKL +++ GY + Sbjct: 184 G-FDYFGSDRVVDDLIRRIRKKLDKIP----LETVWGFGYRL 220 >gi|194014361|ref|ZP_03052978.1| two-component response regulator [Bacillus pumilus ATCC 7061] gi|194013387|gb|EDW22952.1| two-component response regulator [Bacillus pumilus ATCC 7061] Length = 228 Score = 147 bits (372), Expect = 8e-34, Method: Composition-based stats. Identities = 49/224 (21%), Positives = 95/224 (42%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G + + D+ ++ L L Sbjct: 6 ILVVEDEKKIARVLSLELEYEGYEVTVKETGMDGLQALEEESFDLVLLDVML--PELSGL 63 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +R + P+I I+ S+ + D G +D + KP E+LAR+ A R Sbjct: 64 EVLRRVRKTNTATPIILITARGSVPDKVSGLDLGANDYITKPFDIEELLARIRAQLRLNI 123 Query: 121 VSNNRAETGPIRVF----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + ET RD + G++ L RE +L +L+ ++ + + + Q+ +A Sbjct: 124 HAQEEKETELSIADLTVNEKTRDIQRAGQMLELTPREFDLLVHLLKHQQQVLTRDQLLTA 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G FD + NVV+ +I LRKK+ + + R +GY + Sbjct: 184 VWG-FDYFGDTNVVDVYIRYLRKKVDYPFEKQLIHTVRGVGYVM 226 >gi|251798742|ref|YP_003013473.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247546368|gb|ACT03387.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 238 Score = 147 bits (372), Expect = 8e-34, Method: Composition-based stats. Identities = 45/226 (19%), Positives = 99/226 (43%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + G + + E + R D+ ++ L + Sbjct: 5 ILVVDDEPSISMLIEFNLKLAGYDVRCVSDGEAVFEMLKPFRPDLIVLDLML--PKMDGI 62 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ R +R S VP++ ++ + + D+G DD + KP +E+++R+ AI+RR++ Sbjct: 63 QVCRELRKQSNAVPIVMLTALQDVTDKIAGLDNGADDYMTKPFSPQELISRIQAIFRRIQ 122 Query: 121 VSNNRAETGPIRVFSDGRDPEVQG-----EVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 +AE+ + E + L +E +L +L +RGK +++ Q+ Sbjct: 123 TLPGQAESTTFDIGRLTVRAEQREVLIDGRTIELTPKEFELLLFLCKHRGKVLSRQQLLH 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 ++ + + +V+ HIS LR K+ + + + R +GY + Sbjct: 183 GVWD-YHFLGDTRIVDVHISHLRDKIEQNARTPEYIMTVRNVGYKL 227 >gi|139439877|ref|ZP_01773242.1| Hypothetical protein COLAER_02277 [Collinsella aerofaciens ATCC 25986] gi|133774805|gb|EBA38625.1| Hypothetical protein COLAER_02277 [Collinsella aerofaciens ATCC 25986] Length = 240 Score = 147 bits (372), Expect = 8e-34, Method: Composition-based stats. Identities = 42/225 (18%), Positives = 90/225 (40%), Gaps = 8/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D ++D A +G + G + + D+ ++ L Sbjct: 8 ILLVEDEKAIRDAVAAYLEREGYWVVGVGDGQSAIEEFEKHQFDLVVLDLML--PKIPGE 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117 + R IR S VP+I ++ ++ + + G DD + KP R + A ++ Sbjct: 66 RVCRTIRDTSDVPIIMLTAKGEIEDRIIGLELGADDYLIKPFSPRELVARVRALFRRAHQ 125 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + + G + + G V+G+ L E ++L L + G+ + ++ + Sbjct: 126 ADEPAVEVLDFGDLVIDISGHKILVEGKEVDLTASEFKLLTTLARHPGRVYNRMELVEKV 185 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 G +D E ++SH+ LR KL + + + +GY + Sbjct: 186 LG-YDFEGYERTIDSHVKNLRAKLGDDPKKPKWLYTVHGVGYRFE 229 >gi|145596198|ref|YP_001160495.1| response regulator receiver [Salinispora tropica CNB-440] gi|145305535|gb|ABP56117.1| response regulator receiver [Salinispora tropica CNB-440] Length = 233 Score = 147 bits (372), Expect = 8e-34, Method: Composition-based stats. Identities = 45/223 (20%), Positives = 93/223 (41%), Gaps = 8/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + A G + S R D+ ++ L Sbjct: 10 LLVVEDDPNILELLSASLRFAGFDVATAISGSAALSAAKEHRPDLVVLDIML--PDLDGF 67 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117 E+ R++R + P++ ++ + + G DD V KP E+ AR+ Sbjct: 68 EVIRLLREGGTRTPVVFLTARDATDDKIRGLTLGGDDYVTKPFSLEELTARIRAVLRRST 127 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + R + + + + G+ L E ++L YLM N + ++K QI + Sbjct: 128 SGEQAPARLTFADLELDEEAHEVHRAGQRVQLSPTEFKLLRYLMLNANRVLSKAQILDHV 187 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + +D ++N+VES+IS LR+K+ + + + R +GY + Sbjct: 188 W-NYDFRGDDNIVESYISYLRRKV-DNTQPRLIHTLRGVGYVL 228 >gi|317492809|ref|ZP_07951233.1| response regulator receiver domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918931|gb|EFV40266.1| response regulator receiver domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 241 Score = 147 bits (372), Expect = 8e-34, Method: Composition-based stats. Identities = 50/220 (22%), Positives = 88/220 (40%), Gaps = 4/220 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + I G D+ ++ L+ G L Sbjct: 18 LIVEDEPKLGQLLIDYLTAGGYQPHLLADGNAVLPYVHQTPPDLILLD--LMLPGTDGLT 75 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R IR S VP++ ++ L + G DD + KP RE++ARV I RR Sbjct: 76 LCREIRRFSDVPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCVRR 135 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 + + + Q ++ L E R+L+ L G +++ Q+ + +Y + Sbjct: 136 TESNAEPMLIIDENRYQASFQDQLLDLTPAEFRLLKTLATQPGTVLSREQLLNHLYDDY- 194 Query: 183 EAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 V + V+SHI LR+KL + G + S +GY + Sbjct: 195 RVVTDRTVDSHIKNLRRKLEQLENGEPFIRSVYGIGYRWE 234 >gi|303242284|ref|ZP_07328771.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] gi|302590194|gb|EFL59955.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] Length = 228 Score = 147 bits (372), Expect = 8e-34, Method: Composition-based stats. Identities = 33/221 (14%), Positives = 82/221 (37%), Gaps = 7/221 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ I + + + L + D+ ++ L Sbjct: 5 ILVVDDEKSIRSFIITNLKRNNFEVLEAGTGHEALRLVKFEKPDLVLLDIML--PDMDGF 62 Query: 62 ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118 ++ + I + + +I ++ + + G DD + KP E+ + Sbjct: 63 QVCKEISCDYPSLSVIMLTARGQDLDKVRGLELGADDYIIKPFSPMELVARIKAILRRAG 122 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + S+ GP RV + + + RE +++ + N K + +I + ++ Sbjct: 123 KQNSSVEIHIGPFRVDMEAQSIYKNDVLLDFTPREFSLMKVFINNINKAFTRDEILNIVW 182 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGY 218 G D + V+ HI ++R+K+ + +++ GY Sbjct: 183 GE-DFVGDPKTVDVHIRRIREKIEDDPSNPKYIETLWGRGY 222 >gi|271501522|ref|YP_003334548.1| winged helix family two component transcriptional regulator [Dickeya dadantii Ech586] gi|270345077|gb|ACZ77842.1| two component transcriptional regulator, winged helix family [Dickeya dadantii Ech586] Length = 243 Score = 147 bits (372), Expect = 8e-34, Method: Composition-based stats. Identities = 48/223 (21%), Positives = 86/223 (38%), Gaps = 7/223 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + + G E E + ++ L G L Sbjct: 17 LIVEDEPKLAQLLVDYLQASGYRTHWLTQGEEVEPWVREHPCQLILLDLML--PGRDGLT 74 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R IR S VP+I ++ L + G DD + KP RE++ARV + RR + Sbjct: 75 LCRAIRGFSNVPIIMVTARTEEIDRLLGLEIGADDYICKPYSPREVVARVKTLLRRCRWQ 134 Query: 123 NNRAETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + + + G L E R+L+ L A G+ ++ Q+ +Y Sbjct: 135 HEPLPNDVLPALLIDQNRYQASYLGRHLELTPAEFRLLKTLSAEPGRVFSREQLLDHLYD 194 Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + V + ++SHI LR+KL + + +GY + Sbjct: 195 DY-RVVTDRTIDSHIKNLRRKLEVFDRETSFIRTVYGIGYRWE 236 >gi|229012628|ref|ZP_04169801.1| DNA-binding response regulator [Bacillus mycoides DSM 2048] gi|228748651|gb|EEL98503.1| DNA-binding response regulator [Bacillus mycoides DSM 2048] Length = 233 Score = 147 bits (372), Expect = 8e-34, Method: Composition-based stats. Identities = 46/223 (20%), Positives = 93/223 (41%), Gaps = 6/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD A +++ +DG + + + S D+ ++ Sbjct: 13 ILVADDDANIRELVCLFLRNDGFATAEAADGKEALAVYISTNVDLVVLDIM--MPIMDGW 70 Query: 62 ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L + + RA+ +PL+ ++ + F+ G DD + KP E+ RV A+ +R K Sbjct: 71 TLSKELRRANPDLPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVRALLKRYK 130 Query: 121 VSNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + + + E LP +E +L L G+ + Q+ I+G Sbjct: 131 IGSTQKIHFGNVILDRQTYKVMNGTESLTLPLKEFELLYKLAGTPGQVYTRVQLIDQIWG 190 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + D A ++ V+ HI +LR++ F +++ R LGY ++ Sbjct: 191 I-DYAGDDRTVDVHIKRLRERFATTPDFR-IETVRGLGYRLEV 231 >gi|158338752|ref|YP_001519929.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] gi|158308993|gb|ABW30610.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] Length = 243 Score = 147 bits (372), Expect = 8e-34, Method: Composition-based stats. Identities = 47/228 (20%), Positives = 94/228 (41%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++ G + E A D+ ++ Sbjct: 8 ILVVDDEASIRRILETRLSMIGYDVVTAADGEEAIDTFHHAIPDLVVLDVM--MPKLDGY 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + +R S VP+I ++ + + + G DD V KP +E+ AR+ ++ RR+ Sbjct: 66 GVCQELRKESDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVSK 125 Query: 122 SNNRAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + N +++ ++ R E L E +LE L++ G+ +++ I Sbjct: 126 NGNSGIPSSGVISVHTLKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEAFSRSDIL 185 Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220 ++G + V+ VV+ HIS+LR KL + + + + R GY Sbjct: 186 QEVWGYTPERHVDTRVVDVHISRLRAKLEEDPSNPELILTARGTGYLF 233 >gi|307705285|ref|ZP_07642149.1| response regulator [Streptococcus mitis SK597] gi|307621167|gb|EFO00240.1| response regulator [Streptococcus mitis SK597] Length = 218 Score = 147 bits (372), Expect = 8e-34, Method: Composition-based stats. Identities = 50/220 (22%), Positives = 101/220 (45%), Gaps = 6/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++++G D G + L+ + +V+ + + L Sbjct: 3 ILIVEDEEMIREGISDYLTDCGYETIEAADGQEA--LEKFSSYEVALVLLDIQMPKLNGL 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ IR SQVP++ ++ + + + F S D + KP + RV AI++R Sbjct: 61 EVLAEIRKTSQVPVLMLTAFQDEEYKMTAFASLADGYLEKPFSLSLLKVRVDAIFKRYYD 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + +V + + GE + +E IL+YL+ N G+ + ++QI A++ Sbjct: 121 TGRIFSYKDTKVDFESYSASLAGEEVAINAKELEILDYLVKNEGRALTRSQIIDAVWKAT 180 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 DE + V++ +I +LRKKL D + + R +GY ++ Sbjct: 181 DEVPFDRVIDVYIKELRKKLDL----DCILTVRNVGYKLE 216 >gi|304407935|ref|ZP_07389585.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] gi|304342954|gb|EFM08798.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] Length = 235 Score = 147 bits (372), Expect = 8e-34, Method: Composition-based stats. Identities = 41/229 (17%), Positives = 77/229 (33%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD + + +G + + L D++ ++ + Sbjct: 5 ILITDDEIEIAELLQLFLEKEGYQVVVAYNGTEAWELLQHRTIDLAILDINMPL--MDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH---------REILARV 112 L + IR P+I IS S + G DD + KP + + A Sbjct: 63 ALLKHIRTIHTFPVIVISARNSDYDKILGLGLGADDFIAKPFNPLEVVARVQAQLRRANE 122 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + G + + E PL E R+L+ M + GK K Sbjct: 123 FNKPSVPEQPADTTTLGRLVLDHSSCTLLRGDEPIPLTALEYRLLKTFMLSPGKIFTKRH 182 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 +F ++ ++N + IS+LR+K+ + + R LGY Sbjct: 183 LFELVWSDL-YLGDDNAIMVQISRLREKIEEQPKQPRYIQTVRGLGYKF 230 >gi|159039592|ref|YP_001538845.1| two component transcriptional regulator [Salinispora arenicola CNS-205] gi|157918427|gb|ABV99854.1| two component transcriptional regulator, winged helix family [Salinispora arenicola CNS-205] Length = 233 Score = 147 bits (372), Expect = 8e-34, Method: Composition-based stats. Identities = 45/223 (20%), Positives = 93/223 (41%), Gaps = 8/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + A G + S R D+ ++ L Sbjct: 10 LLVVEDDPNILELLSASLRFAGFDVATATSGSAALTAAKDHRPDLVVLDVML--PDLDGF 67 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117 E+ R++R + P++ ++ + + G DD V KP E+ AR+ Sbjct: 68 EVIRMMREGGARTPVVFLTARDATDDKIRGLTLGGDDYVTKPFSLEELTARIRAVLRRSA 127 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + R + + + + G+ L E ++L YLM N + ++K QI + Sbjct: 128 SGEQAPARLTFADLELDEEAHEVHRAGQRVQLSPTEFKLLRYLMLNANRVLSKAQILDHV 187 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + +D ++N+VES+IS LR+K+ + + + R +GY + Sbjct: 188 W-NYDFRGDDNIVESYISYLRRKV-DNTQPRLIHTLRGVGYVL 228 >gi|30022740|ref|NP_834371.1| two-component response regulator [Bacillus cereus ATCC 14579] gi|229129950|ref|ZP_04258916.1| hypothetical protein bcere0015_43900 [Bacillus cereus BDRD-Cer4] gi|29898299|gb|AAP11572.1| Two-component response regulator [Bacillus cereus ATCC 14579] gi|228653641|gb|EEL09513.1| hypothetical protein bcere0015_43900 [Bacillus cereus BDRD-Cer4] Length = 229 Score = 147 bits (372), Expect = 8e-34, Method: Composition-based stats. Identities = 47/229 (20%), Positives = 89/229 (38%), Gaps = 11/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D + + + ++ +S E + D+ ++ L Sbjct: 4 ILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQIALQEDYDLIILDIML--PKMNGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IRA +P++ +S + G DD + KP E++ARV A R + Sbjct: 62 EICKQIRAVKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121 Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + I + R + E +E +L + + N + + K Q+F Sbjct: 122 LLGNVSKQRDTLYIHGISIDQRARKVFINNEEVAFTTKEFDLLTFFVTNPNQVLNKEQLF 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 I+GL D A + V HI KLR+K+ + +++ GY + Sbjct: 182 ERIWGL-DSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRFNV 229 >gi|114563933|ref|YP_751447.1| two component transcriptional regulator, winged helix family protein [Shewanella frigidimarina NCIMB 400] gi|114335226|gb|ABI72608.1| two component transcriptional regulator, winged helix family [Shewanella frigidimarina NCIMB 400] Length = 229 Score = 147 bits (372), Expect = 8e-34, Method: Composition-based stats. Identities = 34/224 (15%), Positives = 85/224 (37%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +++ + G + + L D+ ++ G + Sbjct: 5 ILIVEDESAIREMLTFVMDQHGFTTAAAEDFDSAIELLKEPYPDLILLDWM--FPGGSGI 62 Query: 62 ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIY 116 +L + ++ Q+P+I ++ + + + G DD + KP +E+ + Sbjct: 63 QLAKRLKQDEFTRQIPIIMLTARGEEEDKVKGLEVGADDYITKPFSPKELVARIKAVLRR 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + +++ V V + E R+L + M + + ++ Q+ Sbjct: 123 SAPTRLEETIDVQGLQLDPVSHRVTVGDAVLDMGPTEFRLLHFFMTHPERVYSREQLLDN 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + VE+ V+ HI +LRK + + + R GY Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKAVEEGGHDKLIQTVRGAGYRF 225 >gi|22124885|ref|NP_668308.1| phosphate regulon transcriptional regulatory protein [Yersinia pestis KIM 10] gi|45440577|ref|NP_992116.1| phosphate regulon transcriptional regulator [Yersinia pestis biovar Microtus str. 91001] gi|165926563|ref|ZP_02222395.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia pestis biovar Orientalis str. F1991016] gi|166011007|ref|ZP_02231905.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia pestis biovar Antiqua str. E1979001] gi|166212953|ref|ZP_02238988.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia pestis biovar Antiqua str. B42003004] gi|167399213|ref|ZP_02304737.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167421696|ref|ZP_02313449.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167423518|ref|ZP_02315271.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia pestis biovar Mediaevalis str. K1973002] gi|270489463|ref|ZP_06206537.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia pestis KIM D27] gi|294504931|ref|YP_003568993.1| positive response regulator for pho regulon [Yersinia pestis Z176003] gi|21957719|gb|AAM84559.1|AE013701_4 positive response regulator for pho regulon [Yersinia pestis KIM 10] gi|45435434|gb|AAS60993.1| phosphate regulon transcriptional regulatory protein [Yersinia pestis biovar Microtus str. 91001] gi|165921491|gb|EDR38688.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia pestis biovar Orientalis str. F1991016] gi|165990007|gb|EDR42308.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia pestis biovar Antiqua str. E1979001] gi|166205740|gb|EDR50220.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia pestis biovar Antiqua str. B42003004] gi|166960615|gb|EDR56636.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051717|gb|EDR63125.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167057688|gb|EDR67434.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia pestis biovar Mediaevalis str. K1973002] gi|262362995|gb|ACY59716.1| positive response regulator for pho regulon [Yersinia pestis D106004] gi|262366919|gb|ACY63476.1| positive response regulator for pho regulon [Yersinia pestis D182038] gi|270337967|gb|EFA48744.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia pestis KIM D27] gi|294355390|gb|ADE65731.1| positive response regulator for pho regulon [Yersinia pestis Z176003] Length = 239 Score = 147 bits (372), Expect = 8e-34, Method: Composition-based stats. Identities = 38/224 (16%), Positives = 91/224 (40%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A +++ + +G + S D+ ++ L G + Sbjct: 15 ILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVARLSEPFPDLVLLDWML--PGGSGI 72 Query: 62 ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 + + ++ +P++ ++ + + + G DD + KP +E++AR+ A+ RR Sbjct: 73 QFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRR 132 Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + E + + + + E ++L + M + + ++ Q+ + Sbjct: 133 ISPMAVEEVIEMQGLSLDPSSHRVMANDQALDMGPTEFKLLHFFMTHPERVYSREQLLNY 192 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + VE+ V+ HI +LRK L V + R GY Sbjct: 193 VWGT-NVYVEDRTVDVHIRRLRKALETDGHDKMVQTVRGTGYRF 235 >gi|90415561|ref|ZP_01223495.1| DNA-binding response regulator PhoB [marine gamma proteobacterium HTCC2207] gi|90332884|gb|EAS48054.1| DNA-binding response regulator PhoB [marine gamma proteobacterium HTCC2207] Length = 240 Score = 147 bits (372), Expect = 8e-34, Method: Composition-based stats. Identities = 49/224 (21%), Positives = 99/224 (44%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++D G ++ ++ + + D+ ++ G L Sbjct: 13 ILIVDDEAAIRDMLSIALEAAGFNVLQADNAQQAHASIIDNQPDLVLLDWM--MPGTTGL 70 Query: 62 ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 EL R ++ ++ P+I ++ + + DSG DD + KP RE+++RV A+ RR Sbjct: 71 ELLRRLKRDELTAKTPIIMLTAKAEEDSKIAGLDSGADDYIPKPFSPRELISRVNAVLRR 130 Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + G + G + GE L E R+L++ + ++ + ++ QI Sbjct: 131 IGREALKEPISIGELIFDPLGHRVSIAGEPINLGPTEYRLLQFFLTHQERVYSRGQILDY 190 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + ++E V+ HI +LRK + + V + R GY Sbjct: 191 VWG-GNVYLDERTVDVHIRRLRKAISVAGHENYVQTVRGAGYRF 233 >gi|229061003|ref|ZP_04198357.1| DNA-binding response regulator [Bacillus cereus AH603] gi|228718372|gb|EEL70006.1| DNA-binding response regulator [Bacillus cereus AH603] Length = 236 Score = 147 bits (372), Expect = 8e-34, Method: Composition-based stats. Identities = 46/223 (20%), Positives = 93/223 (41%), Gaps = 6/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD A +++ +DG + + + S D+ ++ Sbjct: 16 ILVADDDANIRELVCLFLRNDGFATAEAADGKEALAVYISTNVDLVVLDIM--MPIMDGW 73 Query: 62 ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L + + RA+ +PL+ ++ + F+ G DD + KP E+ RV A+ +R K Sbjct: 74 TLSKELRRANPDLPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVRALLKRYK 133 Query: 121 VSNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + + + E LP +E +L L G+ + Q+ I+G Sbjct: 134 IGSTQKIHFGNVILDRQTYKVMNGTESLTLPLKEFELLYKLAGTPGQVYTRVQLIDQIWG 193 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + D A ++ V+ HI +LR++ F +++ R LGY ++ Sbjct: 194 I-DYAGDDRTVDVHIKRLRERFATTPDFR-IETVRGLGYRLEV 234 >gi|50122111|ref|YP_051278.1| DNA-binding transcriptional regulator BaeR [Pectobacterium atrosepticum SCRI1043] gi|49612637|emb|CAG76087.1| two-component system response regulator [Pectobacterium atrosepticum SCRI1043] Length = 242 Score = 147 bits (372), Expect = 8e-34, Method: Composition-based stats. Identities = 45/226 (19%), Positives = 84/226 (37%), Gaps = 9/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + + + + + ++ L G L Sbjct: 13 ILIVEDEPKLGQLLVDYLQAADYATQWLPNGNDVVEWVRQHSPSLILLDLML--PGCDGL 70 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R IR S VP+I ++ L + G DD + KP RE++ RV + RR Sbjct: 71 TLCRTIRQFSNVPIIMVTARIEEIDRLLGLEIGADDYICKPFSPREVVVRVRTLLRRCGW 130 Query: 122 SNNRAETGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 N+ + + G G+ L E R+L+ L GK ++ + Sbjct: 131 QNDGVKAAEKSETALLIDKSGFQASYLGQNLDLTPAEFRLLKTLSTEPGKVFSREALLDK 190 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 +Y + V + ++SHI LR+KL + + +GY + Sbjct: 191 LYDDY-RVVTDRTIDSHIKNLRRKLEQLDEETSFIRTVYGIGYRWE 235 >gi|15964268|ref|NP_384621.1| phosphate regulon transcriptional regulatory protein [Sinorhizobium meliloti 1021] gi|150395352|ref|YP_001325819.1| two component transcriptional regulator [Sinorhizobium medicae WSM419] gi|307307005|ref|ZP_07586744.1| two component transcriptional regulator, winged helix family [Sinorhizobium meliloti BL225C] gi|307320659|ref|ZP_07600072.1| two component transcriptional regulator, winged helix family [Sinorhizobium meliloti AK83] gi|6685724|sp|Q52990|PHOB_RHIME RecName: Full=Phosphate regulon transcriptional regulatory protein phoB gi|152404|gb|AAB42026.1| phosphate regulatory protein [Sinorhizobium meliloti] gi|15073445|emb|CAC45087.1| Phosphate regulon transcriptional regulatory protein [Sinorhizobium meliloti 1021] gi|150026867|gb|ABR58984.1| two component transcriptional regulator, winged helix family [Sinorhizobium medicae WSM419] gi|306893694|gb|EFN24467.1| two component transcriptional regulator, winged helix family [Sinorhizobium meliloti AK83] gi|306901945|gb|EFN32544.1| two component transcriptional regulator, winged helix family [Sinorhizobium meliloti BL225C] Length = 227 Score = 147 bits (372), Expect = 8e-34, Method: Composition-based stats. Identities = 52/225 (23%), Positives = 96/225 (42%), Gaps = 8/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++D + +G ++ + E D+ ++ L G + Sbjct: 5 IAVVEDEEALSVLLRYNLEAEGFEVDTILRGDEAEIRLQERLPDLLILDWML--PGVSGI 62 Query: 62 ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 EL R +R + P+I ++ + +G DD V KP E++ARV A+ RR Sbjct: 63 ELCRRLRQRPETERLPIIMLTARGEESERVRGLATGADDYVVKPFSTPELMARVKAMLRR 122 Query: 119 LKVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 K G I + + + L E R+LE+LM++ G+ +++Q+ Sbjct: 123 AKPEVLSTLLRCGDIELDRETHRVHRRSREVRLGPTEFRLLEFLMSSPGRVFSRSQLLDG 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G D V+E V+ H+ +LRK L D + + R GYS++ Sbjct: 183 VWG-HDIYVDERTVDVHVGRLRKALNFSNMPDVIRTVRGAGYSLE 226 >gi|328553275|gb|AEB23767.1| yvrH [Bacillus amyloliquefaciens TA208] gi|328911939|gb|AEB63535.1| Transcriptional regulatory protein yvrH [Bacillus amyloliquefaciens LL3] Length = 235 Score = 147 bits (372), Expect = 8e-34, Method: Composition-based stats. Identities = 43/225 (19%), Positives = 89/225 (39%), Gaps = 10/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD + + + +G+ + ++ D+ ++ ++ + Sbjct: 9 LIIDDEREILELIKTVLIREGIDRVITASTARDGLAQFHQENPDLVILD--IMLPDGEGY 66 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + IR S VP+I +S + G DD + KP +E+ RV A RR Sbjct: 67 DICKQIRDISHVPIIFLSAKGEETDKIVGLAIGGDDYITKPFSPKEVAYRVKAQLRRSSY 126 Query: 122 SNNRAETG-----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 P + + G L +E ++ Y + + + ++K ++ A Sbjct: 127 LQPSQTDTLIKAGPFELHQQQAELTKNGAAIELTPKELMLMTYFLQHPNRVISKETLYQA 186 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 ++G D +N V HI +LR+K+ D + + + LGY Sbjct: 187 VWGE-DFFGSDNTVMVHIRRLREKIETIPSTPDFLVTVKGLGYKF 230 >gi|317969839|ref|ZP_07971229.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. CB0205] Length = 253 Score = 147 bits (372), Expect = 8e-34, Method: Composition-based stats. Identities = 45/232 (19%), Positives = 92/232 (39%), Gaps = 15/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD ++ G + + ++ DV ++ Sbjct: 12 ILVADDEENIRRILETRLVMLGHEVTLAENGAQALEHFRASEPDVVVLDVM--MPELDGF 69 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118 + IRA S+VP+I ++ + + G DD + KP +E+ AR+ + RR Sbjct: 70 AVTERIRAQSEVPIILLTALGDVADRITGLQLGADDYMVKPFSPKELEARIRCVMRRVSS 129 Query: 119 --------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 +++ G + + + R E L E +LE L++ G+ +++ Sbjct: 130 VQANGVAGPGRTSHVVVVGDLSIDFNKRQAHRGDERIRLTGMEFNLLELLLSRSGEPISR 189 Query: 171 TQIFSAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 + ++G + + + VV+ HIS+LR KL + + + + R LGY Sbjct: 190 LDMLEKVWGYKPERSSDSRVVDVHISRLRAKLEDDPENPELILTARGLGYMF 241 >gi|229019899|ref|ZP_04176696.1| hypothetical protein bcere0030_43990 [Bacillus cereus AH1273] gi|228741389|gb|EEL91592.1| hypothetical protein bcere0030_43990 [Bacillus cereus AH1273] Length = 229 Score = 147 bits (372), Expect = 8e-34, Method: Composition-based stats. Identities = 45/229 (19%), Positives = 88/229 (38%), Gaps = 11/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + + ++ +S E + D+ ++ L Sbjct: 4 ILLVEDEISIAELQRDYLEISDFQVDVEHSGEIGLQMALQEDYDLIILDIML--PKMNGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IRA +P++ +S + G DD + KP E++ARV A R + Sbjct: 62 EICKQIRAIKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121 Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + I + R + E +E +L + + + + + K Q+F Sbjct: 122 LSGNVSKQRDTLYIHGISIDQRARKVFINNEEIAFTTKEFDLLTFFVTHPNQVLNKEQLF 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 I+GL D A + V HI KLR+K+ + +++ GY + Sbjct: 182 ERIWGL-DSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRFNV 229 >gi|221211979|ref|ZP_03584957.1| transcriptional activator protein IrlR [Burkholderia multivorans CGD1] gi|221168064|gb|EEE00533.1| transcriptional activator protein IrlR [Burkholderia multivorans CGD1] Length = 225 Score = 147 bits (372), Expect = 8e-34, Method: Composition-based stats. Identities = 45/221 (20%), Positives = 88/221 (39%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + G S++ L DV ++ L Sbjct: 3 ILIVEDEPKTGAYLKKGLEESGFSVDLATDGAQGLLLAQEESYDVIVLDVML--PVLDGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120 + + +R P++ ++ +Q + + G DD + KP E+LARV R Sbjct: 61 GVLKRLRDTHTTPVLFLTARDDVQDRVHGLELGADDYLVKPFAFVELLARVRTLARRGPP 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 R G + + R + L RE +L+ L G+ +++TQI S ++ + Sbjct: 121 RETERITVGDLDIDVVRRRVKRGAVRIDLTPREFSLLQLLARRHGEVLSRTQIASYVWDM 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + NVVE I +LR K+ + + + R +GY ++ Sbjct: 181 -NFDSDTNVVEVAIRRLRAKVDDDFPIKLIHTVRGVGYVLE 220 >gi|170755164|ref|YP_001779900.1| regulatory protein VanR [Clostridium botulinum B1 str. Okra] gi|169120376|gb|ACA44212.1| regulatory protein VanR [Clostridium botulinum B1 str. Okra] Length = 228 Score = 147 bits (372), Expect = 8e-34, Method: Composition-based stats. Identities = 36/227 (15%), Positives = 82/227 (36%), Gaps = 10/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D ++D + + + D+ ++ L L Sbjct: 4 ILIIEDDEDIRDILKLYLEGQSYEILEAENGAKAMKQL-VKQPDLVILDLML--PDIDGL 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH------REILARVAAI 115 + + IR P+I I+ + Q + G DD + KP + + R Sbjct: 61 SICKSIRKKYYYPIIMITAKNADQDKILGLSYGADDYITKPFNPLEVVARVKAQLRRYKQ 120 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 Y + + + + + L E +ILE L+ +G+ ++ ++F+ Sbjct: 121 YDENITDTESIYYKALTLNQKSKQVSINEKEIKLTPTEFKILEALLKRKGEVLSGEELFN 180 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221 I+ + N + H+ LR+K+ + + + + +GY I+ Sbjct: 181 LIWEDEYYSKSTNTITVHVRNLREKMDDSFEKPEYIKTVWGVGYIIE 227 >gi|158334650|ref|YP_001515822.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] gi|158304891|gb|ABW26508.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] Length = 224 Score = 147 bits (372), Expect = 8e-34, Method: Composition-based stats. Identities = 46/221 (20%), Positives = 91/221 (41%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + +G + N ++ D+ ++ L G + Sbjct: 5 ILLVEDETKLAQFVEMELTHEGYQVTVANDGIGGLTAARESQPDLILLDWML--PGFSGV 62 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +RA P+I ++ + ++ D+G DD + KP E+LARV A RR + Sbjct: 63 EVCRRLRATGDKVPVILLTAKDEISDRVEGLDAGADDYMVKPFSIEELLARVRAHLRRTQ 122 Query: 121 VSNNRAETGPIRVFSDGRDPEVQ-GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + + L +E +L YLM + + + + +I ++G Sbjct: 123 EEDPDVLEFSNLTLNQRTREIFRGERSIELTAKEFDLLVYLMMHPRQVLTRDRILEQVWG 182 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D + N++E +I LR KL + + R +GY + Sbjct: 183 -YDFMGDSNIIEVYIRYLRLKLEENQEKRLIQTVRGVGYVM 222 >gi|126737842|ref|ZP_01753572.1| phosphate regulon transcriptional regulatory protein PhoB [Roseobacter sp. SK209-2-6] gi|126721235|gb|EBA17939.1| phosphate regulon transcriptional regulatory protein PhoB [Roseobacter sp. SK209-2-6] Length = 229 Score = 147 bits (372), Expect = 8e-34, Method: Composition-based stats. Identities = 52/221 (23%), Positives = 93/221 (42%), Gaps = 4/221 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61 ++++D ++ DG + + E + DV ++ + G +V Sbjct: 9 LIVEDELAQREVLAYNLEADGFRVLKAENGEEGLLVVDEQMPDVIVLDWMMPNLSGIEVC 68 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + +P+I +S + ++G DD V KP E++ARV RR + Sbjct: 69 RRLKSRTETRSIPIIMLSARSEEVDKVRGLETGADDYVVKPYSVIELVARVRTQLRRSRP 128 Query: 122 SNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S R E G I + ++ ++ L E R+L M G+ ++ Q+ ++G Sbjct: 129 SAVGLRLEYGDIVLDAETHRVSRSDQMLKLGPTEFRLLSTFMEKPGRVWSREQLLDRVWG 188 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D V+ V+ HI +LRK L G DPV + R GY++ Sbjct: 189 R-DIYVDTRTVDVHIGRLRKALTQFGGDDPVRTVRGAGYAL 228 >gi|296118440|ref|ZP_06837019.1| DNA-binding response regulator RegX3 [Corynebacterium ammoniagenes DSM 20306] gi|295968581|gb|EFG81827.1| DNA-binding response regulator RegX3 [Corynebacterium ammoniagenes DSM 20306] Length = 230 Score = 147 bits (372), Expect = 8e-34, Method: Composition-based stats. Identities = 53/230 (23%), Positives = 100/230 (43%), Gaps = 12/230 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + D L +G + + D+ ++ L G Sbjct: 4 ILIVEDEESLADPLAFLLRKEGFEPIVAHDGKTALAEFERHDVDIVLLDLML--PGMSGT 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118 ++ + +RA S VP+I ++ S + + G DD V KP RE++AR+ A+ RR Sbjct: 62 DVCKQLRATSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLRRGGE 121 Query: 119 -----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + E G +R+ + V GE +P +E +LEYL+ N G+ + + Q+ Sbjct: 122 AAEVDEEFEDQILEGGRVRMDVERHTVSVDGEPVSMPLKEFDLLEYLLRNTGRVLTRGQL 181 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 I+G D + ++ H+ +LR K+ + + R LGY + Sbjct: 182 IDRIWGA-DYVGDTKTLDVHVKRLRSKIEAEPSRPQHLVTVRGLGYKYEV 230 >gi|228990825|ref|ZP_04150790.1| Two-component response regulator [Bacillus pseudomycoides DSM 12442] gi|228769351|gb|EEM17949.1| Two-component response regulator [Bacillus pseudomycoides DSM 12442] Length = 250 Score = 147 bits (372), Expect = 8e-34, Method: Composition-based stats. Identities = 44/228 (19%), Positives = 86/228 (37%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +L+DD + D + + + + L + D+ ++ L Sbjct: 17 ILLVDDEQGILDMLVLTLKKENFIHVTTALNGSETLNLVKNHPFDIILLDVML--PDIDG 74 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL R IR ++ P++ ++ S L G DD + KP + E+ AR+ R Sbjct: 75 FELCRQIRNYTNTPILFVTARSSDLDKLTGLGIGGDDYITKPFNPLEVAARINVQLRGQS 134 Query: 121 VSNNRAETGPIRVFSDGRDPEV-------QGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + N + + + G+ +E +L +L + + Q+ Sbjct: 135 MLLNNRQAEHSNLHFESFSLYPSEGLITVNGKSVHCTAKELELLTFLCTHPNRIFTAEQL 194 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220 + ++GL ++ V HISKLRKK+ + + + R +GY Sbjct: 195 YEQVWGLT-SMGDDKTVVMHISKLRKKIEEDPKSPTYIVNLRGIGYKF 241 >gi|297585393|ref|YP_003701173.1| winged helix family two component transcriptional regulator [Bacillus selenitireducens MLS10] gi|297143850|gb|ADI00608.1| two component transcriptional regulator, winged helix family [Bacillus selenitireducens MLS10] Length = 229 Score = 147 bits (372), Expect = 8e-34, Method: Composition-based stats. Identities = 49/224 (21%), Positives = 90/224 (40%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ G E L D+ ++ G L Sbjct: 4 IMIVDDEQGLREMTDLYLKSKGYGTILAEDGERALSLIQDTVPDLILLDI--EMPGMDGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR+ +P+I +S S + F+ G DD + KP E+ AR+ A R + Sbjct: 62 EVCREIRSQLSIPVIFLSVRRSTMDKVACFELGADDYMTKPFDFEELEARIKANIRMYAM 121 Query: 122 SN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + G + + + EV+GE L +E ++L + + + Q++ I Sbjct: 122 NPSSEGPKLRYGHLVIDPEACKCEVEGESISLTAKEMKLLLHFAKHPNQVWTHEQLYDRI 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 + L D V+ HIS LR+K+ + + + R GY Sbjct: 182 WNL-DATGYVETVKVHISHLRRKIERTPNRPEYIQTVRGFGYRF 224 >gi|228994533|ref|ZP_04154374.1| Two component transcriptional regulator, winged helix [Bacillus pseudomycoides DSM 12442] gi|228765212|gb|EEM13925.1| Two component transcriptional regulator, winged helix [Bacillus pseudomycoides DSM 12442] Length = 248 Score = 147 bits (372), Expect = 9e-34, Method: Composition-based stats. Identities = 43/231 (18%), Positives = 90/231 (38%), Gaps = 12/231 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D +++ +G + + L + + D+ ++ + Sbjct: 13 ILIIEDEENIREVCKRYLEREGYEVYTAMNGMEGWDLFLTHQPDLILLDLM--MSKKDGW 70 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL IR S VP+I ++ + + G DD V KP RE++ RV I +R Sbjct: 71 ELCEEIRQQSNVPIIMLTAKGEERDRILGLTIGADDYVTKPFSPRELVLRVQIILKRGNQ 130 Query: 122 SNNR--------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + E ++++ R V L +E +L + + + +++Q+ Sbjct: 131 IPIQEEEFLSEVIEFPDLKIYPKTRCVLVCENKVELTVKEFEVLYVMAKHPKQVFSRSQL 190 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223 I+ F+ + V +S+LR+KL + + +GY + N Sbjct: 191 LELIWD-FEYDGVTHTVTVLVSRLREKLEKHTIKNRWIHTVWGIGYCFEPN 240 >gi|227514133|ref|ZP_03944182.1| DNA-binding response regulator [Lactobacillus fermentum ATCC 14931] gi|227087504|gb|EEI22816.1| DNA-binding response regulator [Lactobacillus fermentum ATCC 14931] Length = 245 Score = 147 bits (372), Expect = 9e-34, Method: Composition-based stats. Identities = 49/227 (21%), Positives = 94/227 (41%), Gaps = 12/227 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + D +G + E S D+ ++ L LE Sbjct: 16 LVVDDEKPISDIIKFNLEKEGYEVVVAYDGEEALQKVESESPDLIVLDLML--PKIDGLE 73 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + +RA P+I ++ S + + G DD V KP +RE++ARV A RR + Sbjct: 74 VAKQVRAKRSTPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQDAT 133 Query: 123 NNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + A + D +GE L RE +L YL + G+ + + + Sbjct: 134 VSPANDDRTADIKVGDLTIHPDAYTVTKRGENINLTHREFELLHYLAQHIGQVINREHLL 193 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++G +D + V+ + +LR+K+ + + ++R +GY + Sbjct: 194 QTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPQWLITRRGVGYYL 239 >gi|197283966|ref|YP_002149838.1| phosphate regulon transcriptional regulator [Proteus mirabilis HI4320] gi|194681453|emb|CAR40291.1| phosphate regulon transcriptional regulator (two-component response regulator) [Proteus mirabilis HI4320] Length = 229 Score = 147 bits (372), Expect = 9e-34, Method: Composition-based stats. Identities = 33/222 (14%), Positives = 86/222 (38%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++++D +++ + +G + D+ ++ + G G +V Sbjct: 5 ILVVEDETAIREMICFVLEQNGFQPIEAEDYDTALSFLIDPYPDLVLLDWMIPGGSGIQV 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118 ++ + +P+I ++ + + ++G DD V KP +E+ + Sbjct: 65 IKQMKRENNTRDIPIIMLTAKGEEEDKVKGLETGADDYVIKPFSPKELVARVKAILRRLS 124 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + E + + Q + + E ++L + M + + ++ Q+ + ++ Sbjct: 125 PMSAEDVIEFNGLSLDPVSHRVTSQDKPIDMGPTEFKLLHFFMTHPERVYSREQLLNYVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G + VE+ V+ HI +LRK + + + R GY Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKAIEQDGHDRMIQTVRGTGYRF 225 >gi|139438317|ref|ZP_01771870.1| Hypothetical protein COLAER_00859 [Collinsella aerofaciens ATCC 25986] gi|133776514|gb|EBA40334.1| Hypothetical protein COLAER_00859 [Collinsella aerofaciens ATCC 25986] Length = 231 Score = 147 bits (372), Expect = 9e-34, Method: Composition-based stats. Identities = 49/229 (21%), Positives = 85/229 (37%), Gaps = 11/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G ++ S D++ ++ L Sbjct: 5 ILVVDDEKAIADLVGIYLTKEGFDVQIAYSGADAAKAILEQEFDLALLDVML--PDIDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH--------HREILARVA 113 EL R IR+ P+I ++ + Q + G DD V KP H ++ + Sbjct: 63 ELLRTIRSSHTYPVIMLTARDAQQDKIGGLSLGADDYVVKPFRPLELIARVHAQLRRYTS 122 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 R + + + + D R V G L E IL YL+ +RG VA + Sbjct: 123 YGSRAQAAESPTIQLDGLEINRDARSVTVDGSPVRLTPTEYSILLYLVEHRGSVVAVEDL 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 F A++ N V HI LR+K+ + + + +GY I+ Sbjct: 183 FRAVWNEDFMPGSNNTVMVHIRHLREKIGDDAQKPRFIKNVWGVGYIIE 231 >gi|50954325|ref|YP_061613.1| two-component system, regulatory protein [Leifsonia xyli subsp. xyli str. CTCB07] gi|50950807|gb|AAT88508.1| two-component system, regulatory protein [Leifsonia xyli subsp. xyli str. CTCB07] Length = 227 Score = 147 bits (372), Expect = 9e-34, Method: Composition-based stats. Identities = 39/221 (17%), Positives = 82/221 (37%), Gaps = 6/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + +G + ++ D+ ++ L G + Sbjct: 5 ILVVDDDTALAEMIGIVLRTEGFDPVFCEDGSEAVGIFRESKPDLVLLDLML--PGLDGI 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119 E+ IRA S P+I ++ + +SG DD + KP + +E+ R + Sbjct: 63 EVCSSIRAESGTPIIMLTAKSDTADVVKGLESGADDYMVKPFNPKELVARIRTRLRPAPV 122 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + G + V G + L E +L L A + + + ++G Sbjct: 123 APPAEQLCIGDLLVDVAGHEVRRGEARIALTPLEFDLLLALAAKPQQVFTREMLLEQVWG 182 Query: 180 LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219 + + +V H+ +LR K+ + V + R +GY Sbjct: 183 -YHYKADTRLVNVHVQRLRAKVERDPDNPKIVMTVRGVGYR 222 >gi|260599895|ref|YP_003212466.1| transcriptional regulatory protein YedW [Cronobacter turicensis z3032] gi|260219072|emb|CBA34427.1| Probable transcriptional regulatory protein yedW [Cronobacter turicensis z3032] Length = 226 Score = 147 bits (372), Expect = 9e-34, Method: Composition-based stats. Identities = 47/220 (21%), Positives = 95/220 (43%), Gaps = 3/220 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D + + G+ ++ L + ++ L G Sbjct: 3 LLLIEDNDKTRAWLEKGLREAGLVVDAVADGRDGLHLALEHDYALIILDIML--PGLDGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R +R P++ ++ ++ + + G DD + KP E+LARV A RR Sbjct: 61 QVLRALRTAKATPVLCLTARDAVSDRVKGLELGADDYLVKPFSFAELLARVRAQLRRHTP 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + + + + GE L R+E +L L + G+ + +T I S ++G+ Sbjct: 121 AAATLQVADLTLDTARHAASRGGERIALTRQEFTLLWLLASRVGEILPRTLIASEVWGI- 179 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + E NVV+ I +LRKK+ + +++ R +GY ++ Sbjct: 180 NFDSETNVVDVAIRRLRKKIDDPFPLKLIETVRGMGYRLN 219 >gi|187919922|ref|YP_001888953.1| two component heavy metal response winged helix family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187718360|gb|ACD19583.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia phytofirmans PsJN] Length = 225 Score = 147 bits (372), Expect = 9e-34, Method: Composition-based stats. Identities = 47/221 (21%), Positives = 94/221 (42%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + G +++ N L DV ++ L G Sbjct: 3 ILVIEDELKTAAYLKKGLEESGYAVDVANDGPQGLILALEEEYDVIVLDVML--PGIDGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120 + + +RA P++ ++ + + + G DD + KP E+LARV R Sbjct: 61 TVVKTLRAKRTTPVLFLTARDDVDDRVRGLELGADDYLVKPFAFVELLARVRTLARRGPP 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + G + + + R + G L RE +L+ L +G+ +++TQI S ++ + Sbjct: 121 RESELIKVGDLEMDVNRRRVKRGGTRIDLTPREFSLLQLLARRQGEVLSRTQIASYVWDM 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + NVVE I +LR K+ + + + R +GY ++ Sbjct: 181 -NFDSDTNVVEVAIRRLRTKIDDDFPVKLIHTVRGVGYVLE 220 >gi|329923464|ref|ZP_08278946.1| putative transcriptional regulatory protein ResD [Paenibacillus sp. HGF5] gi|328941356|gb|EGG37650.1| putative transcriptional regulatory protein ResD [Paenibacillus sp. HGF5] Length = 231 Score = 147 bits (372), Expect = 9e-34, Method: Composition-based stats. Identities = 42/226 (18%), Positives = 81/226 (35%), Gaps = 9/226 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + ++G + + E +S + + ++ ++ Sbjct: 5 LIVDDDKEISGLISIYLENEGYRVIQAHDGEEALQAMTSNNGMIDLVILDVMMPKLNGID 64 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH--------REILARVAA 114 R IR S +P++ +S + +G DD + KP + + Sbjct: 65 TCRRIRETSAIPILMLSAKSEDMDKILGLMTGADDYMIKPFNPLELTTRVKTLLRRSTQY 124 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + ++R + + + G L RE IL L G+ + IF Sbjct: 125 NVDLHQGDSDRIRIDGLDINRTTHEVTANGHAISLTAREFEILYLLARQPGRIFSAEDIF 184 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ V N V HIS LR KL +LG+ + + +GY I Sbjct: 185 QQVWKEK-YYVSNNTVMVHISNLRDKLEKELGYKLIQTVWGVGYKI 229 >gi|218896838|ref|YP_002445249.1| DNA-binding response regulator [Bacillus cereus G9842] gi|218543555|gb|ACK95949.1| DNA-binding response regulator [Bacillus cereus G9842] Length = 232 Score = 147 bits (372), Expect = 9e-34, Method: Composition-based stats. Identities = 38/229 (16%), Positives = 84/229 (36%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +G + ++ E + ++ ++ ++ + Sbjct: 6 ILIVDDDQDIVQFIKVNLMQEGFKVFSAHNGEEALEIINNNSIQLAILDIM--MPQMDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARVA 113 EL R +R +P++ +S S + F +G DD + KP E Sbjct: 64 ELCRRVREKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 123 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 ++V + + + R + GE L + E IL + A + + +I Sbjct: 124 FNQNAVQVMEKKINIRGLEIDEVSRTVMLYGETMNLTKTEYDILYLMAAAKNRVFTIEEI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + +++ N V HI++LR K+ + + +GY I+ Sbjct: 184 YESVWKERAYE-SNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIE 231 >gi|206978118|ref|ZP_03239001.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217962156|ref|YP_002340726.1| DNA-binding response regulator [Bacillus cereus AH187] gi|229141404|ref|ZP_04269942.1| hypothetical protein bcere0013_44970 [Bacillus cereus BDRD-ST26] gi|229198829|ref|ZP_04325523.1| hypothetical protein bcere0001_43500 [Bacillus cereus m1293] gi|206743654|gb|EDZ55078.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217068304|gb|ACJ82554.1| DNA-binding response regulator [Bacillus cereus AH187] gi|228584665|gb|EEK42789.1| hypothetical protein bcere0001_43500 [Bacillus cereus m1293] gi|228642185|gb|EEK98478.1| hypothetical protein bcere0013_44970 [Bacillus cereus BDRD-ST26] gi|324328564|gb|ADY23824.1| DNA-binding response regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 229 Score = 147 bits (372), Expect = 9e-34, Method: Composition-based stats. Identities = 47/229 (20%), Positives = 89/229 (38%), Gaps = 11/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D + + + ++ +S E + D+ ++ L Sbjct: 4 ILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDYDLIILDIML--PKMNGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IRA +P++ +S + G DD + KP E++ARV A R + Sbjct: 62 EICKQIRAIKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121 Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + I + R + E +E +L + + N + + K Q+F Sbjct: 122 LLGNVSKQRDTLYIHGISIDQRARKVFINNEEVAFTTKEFDLLTFFVTNPNQVLNKEQLF 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 I+GL D A + V HI KLR+K+ + +++ GY + Sbjct: 182 ERIWGL-DSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRFNV 229 >gi|307132025|ref|YP_003884041.1| DNA-binding response regulator in two-component regulatory system with BaeS [Dickeya dadantii 3937] gi|306529554|gb|ADM99484.1| DNA-binding response regulator in two-component regulatory system with BaeS [Dickeya dadantii 3937] Length = 273 Score = 147 bits (372), Expect = 9e-34, Method: Composition-based stats. Identities = 48/223 (21%), Positives = 86/223 (38%), Gaps = 7/223 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + + G E E + ++ L G L Sbjct: 47 LIVEDEPKLAQLLVDYLQASGYHTHWLTQGEEVEPWVREHPCQLILLDLML--PGRDGLT 104 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R IR S VP+I ++ L + G DD + KP RE++ARV + RR + Sbjct: 105 LCRAIRGFSNVPIIMVTARTDEIDRLLGLEIGADDYICKPYSPREVVARVKTLLRRCRWQ 164 Query: 123 NNRAETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + + + G L E R+L+ L A G+ ++ Q+ +Y Sbjct: 165 HEPLPGDALPALLIDQNRYQASYLGRHLELTPAEFRLLKTLSAEPGRVFSREQLLDHLYD 224 Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + V + ++SHI LR+KL + + +GY + Sbjct: 225 DY-RVVTDRTIDSHIKNLRRKLEMFDRETSFIRTVYGIGYRWE 266 >gi|269140696|ref|YP_003297397.1| two-component response regulator [Edwardsiella tarda EIB202] gi|267986357|gb|ACY86186.1| two-component response regulator [Edwardsiella tarda EIB202] gi|304560480|gb|ADM43144.1| Two-component response regulator [Edwardsiella tarda FL6-60] Length = 242 Score = 147 bits (372), Expect = 9e-34, Method: Composition-based stats. Identities = 48/228 (21%), Positives = 91/228 (39%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D L+ + D+G + + L D ++ L G L Sbjct: 11 ILVVEDDTLIAELLTLHLCDEGYQVTHAADGDRGMALVEQGGWDALILDLML--PGVDGL 68 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ R +RA P+I S S + + G DD + KP E++ARV A++RR + Sbjct: 69 DICRRVRAMTRYTPIIITSARSSEVHRVLGLELGADDYLAKPFSMIELVARVKALFRRQE 128 Query: 121 VSNNRAE-------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 GP+ + R V L RE +L + + G+ ++ Q+ Sbjct: 129 AMGRNLMLEGGRLSYGPLTIDPMARVVWVGERPIELTPREFDLLYFFARHPGQVFSRLQL 188 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++G + E+ V +HI++LR K+ + + + GY Sbjct: 189 LDKVWG-YQHDGYEHTVNTHINRLRTKIEADPAEPALILTVWGAGYKF 235 >gi|161504418|ref|YP_001571530.1| transcriptional regulator PhoB [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160865765|gb|ABX22388.1| hypothetical protein SARI_02529 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 229 Score = 147 bits (372), Expect = 9e-34, Method: Composition-based stats. Identities = 39/224 (17%), Positives = 93/224 (41%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A +++ + +G + + D+ ++ L G L Sbjct: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNKLNEPWPDLILLDWML--PGGSGL 62 Query: 62 ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 + + ++ S +P++ ++ + + ++G DD + KP +E++AR+ A+ RR Sbjct: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + E + + + E ++L + M + + ++ Q+ + Sbjct: 123 ISPMAVEEVIEMQGLSLDPGSHRVMTGDNPLDMGPTEFKLLHFFMTHPERVYSREQLLNH 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + VE+ V+ HI +LRK L + V + R GY Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALEHSGHDRMVQTVRGTGYRF 225 >gi|145294521|ref|YP_001137342.1| hypothetical protein cgR_0476 [Corynebacterium glutamicum R] gi|140844441|dbj|BAF53440.1| hypothetical protein [Corynebacterium glutamicum R] Length = 232 Score = 147 bits (372), Expect = 9e-34, Method: Composition-based stats. Identities = 54/231 (23%), Positives = 99/231 (42%), Gaps = 14/231 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + D L +G S D+ ++ L G Sbjct: 4 ILIVEDEESLADPLAFLLRKEGFDTIIAGDGPTALVEFSRNEIDIVLLDLML--PGMSGT 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 ++ + +R+ S VP+I ++ S + + G DD V KP RE++AR+ A+ RR Sbjct: 62 DVCKELRSVSTVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLRRRGV 121 Query: 120 --------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + + E G +R+ D V GE +P +E +LEYL+ N G+ + + Sbjct: 122 TETEAEELPLDDQILEGGRVRMDVDSHTVTVDGEPVSMPLKEFDLLEYLLRNAGRVLTRG 181 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221 Q+ I+G D + ++ H+ +LR K+ + + R LGY + Sbjct: 182 QLIDRIWGA-DYVGDTKTLDVHVKRLRSKIEEEPSRPRYLVTVRGLGYKFE 231 >gi|296505136|ref|YP_003666836.1| two-component response regulator [Bacillus thuringiensis BMB171] gi|296326188|gb|ADH09116.1| two-component response regulator [Bacillus thuringiensis BMB171] Length = 229 Score = 147 bits (372), Expect = 9e-34, Method: Composition-based stats. Identities = 46/229 (20%), Positives = 89/229 (38%), Gaps = 11/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D + + + ++ +S E + D+ ++ L Sbjct: 4 ILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQIALQEDYDLIILDIML--PKMNGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IRA +P++ +S + G DD + KP E++ARV A R + Sbjct: 62 EICKQIRAVKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIARYER 121 Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + I + R + E +E +L + + + + + K Q+F Sbjct: 122 LLGNVSKQRDTLYIHGISIDQRARKVFINNEEVAFTTKEFDLLTFFVTHPNQVLNKEQLF 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 I+GL D A + V HI KLR+K+ + +++ GY + Sbjct: 182 ERIWGL-DSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRFNV 229 >gi|296156101|ref|ZP_06838940.1| two component transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] gi|295893607|gb|EFG73386.1| two component transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] Length = 225 Score = 147 bits (372), Expect = 9e-34, Method: Composition-based stats. Identities = 46/221 (20%), Positives = 93/221 (42%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + G +++ N L DV ++ L G Sbjct: 3 ILVIEDELKTAAYLKKGLEESGYAVDVANDGPQGLILALEEEYDVIVLDVML--PGMDGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120 + + +R P++ ++ + + + G DD + KP E+LARV R Sbjct: 61 GVVKTLRTTRTTPVLFLTARDDVDDRVRGLELGADDYLVKPFAFVELLARVRTLARRGPP 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + G + + + R + G L RE +L+ L +G+ +++TQI S ++ + Sbjct: 121 RESELIKVGDLEMDVNRRRVKRGGTRIDLTPREFSLLQLLARRQGEVLSRTQIASYVWDM 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + NVVE I +LR K+ + + + R +GY ++ Sbjct: 181 -NFDSDTNVVEVAIRRLRTKIDDNFPVKLIHTVRGVGYVLE 220 >gi|304317311|ref|YP_003852456.1| transcriptional regulator [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778813|gb|ADL69372.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 231 Score = 147 bits (372), Expect = 9e-34, Method: Composition-based stats. Identities = 46/230 (20%), Positives = 83/230 (36%), Gaps = 13/230 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD + D G ++ + + D+ ++ Sbjct: 4 ILIIDDEKEIADLLKDSLERKGNTVLTAYNGKEGIEKAKEM-PDLIVLDIM--MPDIDGY 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI--------HHREILARVA 113 E+ R IR P++ +S S + F G DD V KP + Sbjct: 61 EVCRKIRDTVICPIVFLSAKQSEMDRIKGFALGGDDYVVKPFSLKELLARIDAHLRREKR 120 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 AI + I + R+ V+G L ++E +LE L + G+ +K QI Sbjct: 121 AILLNEEGKRALLNFKNITIDLKSREVMVKGNPIGLTKKEFDVLELLSLHPGQVFSKEQI 180 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDW 222 + ++G FD + V HI +R K+ N + + + +GY + Sbjct: 181 YEKVWG-FDAEGDTTTVTEHIKNIRAKIENLDPDTEYIKTVWGIGYKWEK 229 >gi|15672379|ref|NP_266553.1| two-component system regulator [Lactococcus lactis subsp. lactis Il1403] gi|116511254|ref|YP_808470.1| DNA-binding response regulator [Lactococcus lactis subsp. cremoris SK11] gi|125623281|ref|YP_001031764.1| two-component system regulator [Lactococcus lactis subsp. cremoris MG1363] gi|281490939|ref|YP_003352919.1| Two-component response regulator [Lactococcus lactis subsp. lactis KF147] gi|12483717|gb|AAG53732.1|AF178425_2 RrC [Lactococcus lactis subsp. cremoris MG1363] gi|12723270|gb|AAK04495.1|AE006276_10 two-component system regulator [Lactococcus lactis subsp. lactis Il1403] gi|116106908|gb|ABJ72048.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactococcus lactis subsp. cremoris SK11] gi|124492089|emb|CAL97018.1| two-component system regulator [Lactococcus lactis subsp. cremoris MG1363] gi|281374697|gb|ADA64217.1| Two-component response regulator [Lactococcus lactis subsp. lactis KF147] gi|300070032|gb|ADJ59432.1| Two-component response regulator [Lactococcus lactis subsp. cremoris NZ9000] gi|326405973|gb|ADZ63044.1| Two-component response regulator [Lactococcus lactis subsp. lactis CV56] Length = 233 Score = 147 bits (372), Expect = 9e-34, Method: Composition-based stats. Identities = 48/228 (21%), Positives = 91/228 (39%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + E + D+ ++ L L Sbjct: 4 ILVVDDEKPISDIVKFNLTKEGFEVFTAFDGEEALEAFKEVQPDLILLDLML--PKLDGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R IR S P+I +S S + + G DD V KP +RE+LAR+ A RR+ V Sbjct: 62 DVAREIRKTSDTPIIMVSAKDSEFDKVIGLELGADDYVTKPFSNRELLARIKANLRRINV 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPL--------PRRERRILEYLMANRGKRVAKTQI 173 + + + G RE +L YL + G+ + + + Sbjct: 122 APAESTDNVKKELIIGNLRINPAHYAAYKNDKQLDLTHREFELLYYLAQHLGEVITRENL 181 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++G +D + V+ + +LR+K+ + V ++R +GY + Sbjct: 182 LETVWG-YDYFGDVRTVDVTVRRLREKVEDTPSRPQYVSTRRGVGYYM 228 >gi|304405183|ref|ZP_07386843.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] gi|304346062|gb|EFM11896.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] Length = 228 Score = 147 bits (372), Expect = 9e-34, Method: Composition-based stats. Identities = 50/223 (22%), Positives = 95/223 (42%), Gaps = 6/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD + +++ + +G E + DV+ ++ + L Sbjct: 5 ILIADDDSNIRELLRFILQREGFRALEAADGEEASRVMRQE--DVALAIVDVMMPEKDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L IR +P++ ++ L F SG DD + KP E+L RV A+ RR ++ Sbjct: 63 MLCEEIRRDYDIPVMLLTARGELDDKARGFRSGTDDYMVKPFEPDELLYRVRALLRRYRI 122 Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 ++ + G V + V GE PLP +E +L L + G+ + Q+ I+G Sbjct: 123 VSSEKLQLGGTTVDRHSYEVNVHGENVPLPLKEFELLAQLASQPGRIFTREQLLRPIWGA 182 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFD--PVDSKRFLGYSID 221 D ++ ++ HI +LR++ + + R LGY ++ Sbjct: 183 -DYEGDDRTIDVHIKRLRERFAPFGLSAGFAITTVRGLGYKLE 224 >gi|171779215|ref|ZP_02920186.1| hypothetical protein STRINF_01063 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282271|gb|EDT47698.1| hypothetical protein STRINF_01063 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 225 Score = 147 bits (372), Expect = 9e-34, Method: Composition-based stats. Identities = 41/226 (18%), Positives = 86/226 (38%), Gaps = 10/226 (4%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 M ++D +++ + G +GF + S + D+ ++ L G Sbjct: 1 MIYCVEDDDDIRELMLYTLKTAGFEAQGFPDGDDFWQAISIQQPDLILLDIML--PGSDG 58 Query: 61 LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--I 115 L + + +P+I + + + D G DD + KP E+++R+ A Sbjct: 59 LAILEKLEQTPTTAGIPVIMATAKGTEYDKVKGLDMGADDYLVKPFGMMEMISRIKAVLR 118 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + G + + + +V L +E +L L+ N + + + Sbjct: 119 RSEKGHVSKILKLGNLSLDVQNYVVKKDNQVIHLTLKEFELLALLLKNPNRVFTRQDLLK 178 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G D E V+ HI LR KL + + + R +GY ++ Sbjct: 179 QVWG-DDFLGETRTVDVHIGTLRTKLGDAGH--YIQTIRGVGYRLE 221 >gi|18310907|ref|NP_562841.1| DNA-binding response regulator [Clostridium perfringens str. 13] gi|18145589|dbj|BAB81631.1| two-component response regulator [Clostridium perfringens str. 13] Length = 265 Score = 147 bits (372), Expect = 9e-34, Method: Composition-based stats. Identities = 45/222 (20%), Positives = 98/222 (44%), Gaps = 7/222 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D ++ F +G ++ + E + S D++ ++ L Sbjct: 48 LIVEDEIRIRFLVRDYFKKEGFNVLEASDGEEALRIFSENIVDLAILDIM--MPKLDGLA 105 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRLK 120 + R IR S P+I ++ + L ++ G DD + KP + +LA+ A Sbjct: 106 VCRNIREVSNTPIILLTAKSQEEDKLLGYELGADDYMTKPFSPKVLLAKAKALLRRTGTL 165 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 N + + + + ++ GE L +E +L YL +N G +++ +I ++G Sbjct: 166 NDKNILDFNGLTINKLSHEVKLNGEELLLSPKEYDLLIYLSSNEGIALSRDRILDNVWG- 224 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D + V+++I +LR+KL +K + + + R GY + Sbjct: 225 YDYFGDIRTVDTNIKRLREKLLDK--ANYIATVRGSGYKFEV 264 >gi|329115847|ref|ZP_08244564.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Streptococcus parauberis NCFD 2020] gi|326906252|gb|EGE53166.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Streptococcus parauberis NCFD 2020] Length = 236 Score = 147 bits (372), Expect = 9e-34, Method: Composition-based stats. Identities = 48/231 (20%), Positives = 94/231 (40%), Gaps = 16/231 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + D +G + D+ ++ L LE Sbjct: 5 LIVDDEKPISDIIKFNLTKEGYDTITAFDGREAVTAFEEEKPDLVILDLML--PELDGLE 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + IR S +P+I +S S + + G DD V KP +RE+LARV A RR + Sbjct: 63 VAKEIRKTSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTETI 122 Query: 123 N------------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 G +++ D + G L RE +L +L + G+ + + Sbjct: 123 ETAVAEENAISGTQELTIGNLQILPDAFVAKKYGNEVELTHREFELLHHLANHIGQVMTR 182 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + ++G +D + V+ + +LR+K+ + + + ++R +GY + Sbjct: 183 EHLLETVWG-YDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYM 232 >gi|320160939|ref|YP_004174163.1| OmpR family two-component response regulator [Anaerolinea thermophila UNI-1] gi|319994792|dbj|BAJ63563.1| OmpR family two-component response regulator [Anaerolinea thermophila UNI-1] Length = 228 Score = 147 bits (372), Expect = 9e-34, Method: Composition-based stats. Identities = 48/219 (21%), Positives = 96/219 (43%), Gaps = 6/219 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + + + L + D+ ++ L + Sbjct: 11 ILLVEDDPAIIQLVALGLRMEKFEVITAIDGREGFQLFLEKKPDLLIVDWML--PKMDGI 68 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R IR S +P+I I+ ++Q ++ D+G DD + KP H E+LARV A RR Sbjct: 69 TLCRKIRELSDLPIIIITAKDAVQDRVEGLDTGADDYLVKPFHLDELLARVRARLRRRLP 128 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 +++ + + + + E+++LE + + + ++K I ++G + Sbjct: 129 ISHQLIFSDLSFDLETHEFFRGKRLLHFTATEQKVLELFLRHPRQVLSKETILEKVWG-Y 187 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D + N+VE +I +R+KL + + + R LGYS+ Sbjct: 188 DFGGDANIVEQYIRSIRQKL---GEPNLIQTIRGLGYSL 223 >gi|304317190|ref|YP_003852335.1| transcriptional regulator [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778692|gb|ADL69251.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 235 Score = 147 bits (372), Expect = 9e-34, Method: Composition-based stats. Identities = 42/226 (18%), Positives = 93/226 (41%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D A + + G ++ ++ + D+ ++ L + Sbjct: 5 ILVIEDEAHILELLRYNLEAQGYNVILTDNGKEGLEKCRELSPDLVLLDLML--PDIDGI 62 Query: 62 ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAI 115 ++ + I++ +P+I ++ + + G DD + KP RE + V Sbjct: 63 DVCKKIKSDEHLKNIPIIMLTAKSEEFDKILGLELGADDYITKPFSIRELLARIKVVLRR 122 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + N + G I + ++ E+ L +E +L+ L NRGK + + + Sbjct: 123 SKNETEENEIIKFGDITIDTEKHIVYKGNEILDLTLKEFELLKLLSKNRGKVLTRDYLLD 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 ++G ++ A E V+ HI LRKK+ + +++ R +GY + Sbjct: 183 KVWG-YEYAGETRTVDVHIRHLRKKIEDDDKLPVYIETVRGIGYKL 227 >gi|229081791|ref|ZP_04214283.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus Rock4-2] gi|228701379|gb|EEL53873.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus Rock4-2] Length = 230 Score = 147 bits (372), Expect = 9e-34, Method: Composition-based stats. Identities = 42/228 (18%), Positives = 92/228 (40%), Gaps = 10/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D +++ +G + + E D+ ++ L Sbjct: 5 ILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIM--MPKLDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115 E+ RIIR S VP++ +S + G DD + KP E+ R + Sbjct: 63 EVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 Y + + G + + E G++ L +E IL+ + N+ + K QI++ Sbjct: 123 YSATETIEKMIQIGDLTIDPINFTVEKNGKLLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 ++ + ++NV+ H+ +LR+K+ + + + + +GY ++ Sbjct: 183 LVWNE-EYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLEV 229 >gi|239627744|ref|ZP_04670775.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239517890|gb|EEQ57756.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 229 Score = 147 bits (372), Expect = 9e-34, Method: Composition-based stats. Identities = 46/227 (20%), Positives = 86/227 (37%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G +E N D+ ++ L G Sbjct: 4 ILIVEDEESIAELEKDYLELSGFEVEIENDGTEGLDKALKEDYDLLILDLML--PGTDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 E+ + +R P+I +S + G DD + KP E++ARV A R Sbjct: 62 EICKKVREVKNTPIIMVSAKKEDIDKIRGLGLGADDYITKPFSPSEMVARVKAHMARYER 121 Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + SN E +++ R + GE +E +L +L N K ++F Sbjct: 122 LIGSGQPSNEIIEIRGLKIDKTARRVWINGEEKTFTTKEFDLLTFLAQNPNHVFTKEELF 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 S I+ + + + V HI K+R+K+ N +++ +GY Sbjct: 182 SKIWDM-ESIGDIATVTVHIKKIREKIEFNTAKPQYIETIWGVGYRF 227 >gi|239616953|ref|YP_002940275.1| two component transcriptional regulator, winged helix family [Kosmotoga olearia TBF 19.5.1] gi|239505784|gb|ACR79271.1| two component transcriptional regulator, winged helix family [Kosmotoga olearia TBF 19.5.1] Length = 233 Score = 147 bits (372), Expect = 9e-34, Method: Composition-based stats. Identities = 50/221 (22%), Positives = 100/221 (45%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + + ++G ++ ++ E D+ ++ L + L Sbjct: 3 ILLVEDEEAITEFVKKGLSEEGYIVDTVDNGEDALNKIFDVDYDLIILDIML--PVKDGL 60 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ R +R + P++ ++ S + + ++G DD + KP E+LAR+ AI RR Sbjct: 61 KVCREVRENGISTPILMLTALDSTEDKVTGLNAGADDYLVKPFSFSELLARIRAILRRPP 120 Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 N + + E G+ L RE +LE+LM + + +++T+I ++ Sbjct: 121 TILNLKLQVGDLVLDTVTHHVERSGKRIDLTPREYALLEFLMRHPNQVLSRTRIVEHVWN 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 L D E N+V+ +I LRKK+ N + + +GY I Sbjct: 181 L-DFYTESNIVDVYIRYLRKKIDNGFENKLIHTVHGVGYMI 220 >gi|332974230|gb|EGK11163.1| DNA-binding response regulator [Kingella kingae ATCC 23330] Length = 231 Score = 147 bits (371), Expect = 9e-34, Method: Composition-based stats. Identities = 44/223 (19%), Positives = 91/223 (40%), Gaps = 5/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D ++ G ++ + ++ L + R D+ ++ L G G Sbjct: 6 ILVVEDEMPIQTLIAFSLQQAGFDVQCASHVQAARELIAQQRHDLLLLDWMLPDGDGVSW 65 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R A + +P+I ++ F G DD + KP RE++AR+ A R Sbjct: 66 IAELRAQPATAALPIILLTARSEDADKEHGFAQGADDYLTKPFSPRELIARIHARLRHRV 125 Query: 121 V---SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + G +++ D + E ++L +LM + + ++ Q+ + Sbjct: 126 QAALPVSLIQMGNLQLNPDTQRVNAGSLHLECSSSEFKLLHFLMQHPERVFSRRQLLDHV 185 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G D VEE V++ I +LR+ L + + R GY Sbjct: 186 WGE-DAFVEERTVDTQIGRLRRLLETANIGHYIQTVRGSGYRF 227 >gi|307709530|ref|ZP_07645985.1| response regulator [Streptococcus mitis SK564] gi|307619723|gb|EFN98844.1| response regulator [Streptococcus mitis SK564] Length = 218 Score = 147 bits (371), Expect = 9e-34, Method: Composition-based stats. Identities = 51/220 (23%), Positives = 102/220 (46%), Gaps = 6/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++++G D G + L+ + +V+ + + L Sbjct: 3 ILIVEDEEMIREGVSDYLTDCGYETIEAADGQEA--LEKFSSYEVALVLLDIQMPKLNGL 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ IR SQVP++ ++ + + + F S D + KP + RV AI++R Sbjct: 61 EVLAEIRKTSQVPVLMLTAFQDEEYKMSAFASLADGYLEKPFSLSLLKVRVDAIFKRYYD 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + +V + + GE P+ +E IL+YL+ N G+ + ++QI A++ Sbjct: 121 TGRIFSYKDAKVDFESYSASLAGEEVPINAKELEILDYLVKNEGRALTRSQIIDAVWKAT 180 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 DE + V++ +I +LRKKL D + + R +GY ++ Sbjct: 181 DEVPFDRVIDVYIKELRKKLDL----DCILTVRNVGYKLE 216 >gi|160894855|ref|ZP_02075629.1| hypothetical protein CLOL250_02405 [Clostridium sp. L2-50] gi|156863286|gb|EDO56717.1| hypothetical protein CLOL250_02405 [Clostridium sp. L2-50] Length = 239 Score = 147 bits (371), Expect = 9e-34, Method: Composition-based stats. Identities = 46/223 (20%), Positives = 86/223 (38%), Gaps = 5/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G S E S + L + + + L+ G Sbjct: 16 ILIVEDDTNINNLLQEALSKAGYSCEQAFSGTEAKLLLNMQEHSYALVLLDLMLPGITGE 75 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + IR +P+I ++ SL + SG DD + KP RE+LAR+ R + Sbjct: 76 AVLEEIRKKGNLPVIVLTAKDSLDEKVKVLTSGADDYITKPFEIREVLARIQVQLRHTEE 135 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEV----FPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + R + + R+E ILE L+ N + +K IF Sbjct: 136 KEIKESNLSFREMVLNKATFQVSIGGKILPKITRQEFAILELLLRNPKQVFSKEDIFEYA 195 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + E ++ HIS +RKK++ + +++ +GY + Sbjct: 196 WDEP-YMGETKTLDVHISNIRKKIKTVTSEEYIETVWGIGYRL 237 >gi|30264741|ref|NP_847118.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47778345|ref|YP_021563.2| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|167633821|ref|ZP_02392144.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|167638012|ref|ZP_02396290.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170685925|ref|ZP_02877148.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|170705358|ref|ZP_02895822.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|177651324|ref|ZP_02934155.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190568258|ref|ZP_03021166.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|196033267|ref|ZP_03100680.1| DNA-binding response regulator [Bacillus cereus W] gi|196040860|ref|ZP_03108158.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|196044024|ref|ZP_03111261.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|227817460|ref|YP_002817469.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228917319|ref|ZP_04080873.1| hypothetical protein bthur0012_45300 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228948416|ref|ZP_04110699.1| hypothetical protein bthur0007_45420 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229093770|ref|ZP_04224869.1| hypothetical protein bcere0021_44940 [Bacillus cereus Rock3-42] gi|229124237|ref|ZP_04253429.1| hypothetical protein bcere0016_45220 [Bacillus cereus 95/8201] gi|229186929|ref|ZP_04314084.1| hypothetical protein bcere0004_44700 [Bacillus cereus BGSC 6E1] gi|229603997|ref|YP_002868949.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|254687479|ref|ZP_05151335.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254725042|ref|ZP_05186825.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254736780|ref|ZP_05194486.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254741817|ref|ZP_05199504.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254757417|ref|ZP_05209444.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|30259416|gb|AAP28604.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47552050|gb|AAT34038.2| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|167513829|gb|EDR89197.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|167530622|gb|EDR93324.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170129483|gb|EDS98346.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|170670389|gb|EDT21129.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|172083150|gb|EDT68212.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190560514|gb|EDV14491.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|195994696|gb|EDX58651.1| DNA-binding response regulator [Bacillus cereus W] gi|196025360|gb|EDX64030.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|196028314|gb|EDX66923.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|227005140|gb|ACP14883.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228596666|gb|EEK54331.1| hypothetical protein bcere0004_44700 [Bacillus cereus BGSC 6E1] gi|228659539|gb|EEL15187.1| hypothetical protein bcere0016_45220 [Bacillus cereus 95/8201] gi|228689655|gb|EEL43463.1| hypothetical protein bcere0021_44940 [Bacillus cereus Rock3-42] gi|228811403|gb|EEM57741.1| hypothetical protein bthur0007_45420 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228842309|gb|EEM87403.1| hypothetical protein bthur0012_45300 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229268405|gb|ACQ50042.1| DNA-binding response regulator [Bacillus anthracis str. A0248] Length = 229 Score = 147 bits (371), Expect = 9e-34, Method: Composition-based stats. Identities = 47/229 (20%), Positives = 89/229 (38%), Gaps = 11/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D + + + ++ +S E + D+ ++ L Sbjct: 4 ILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDYDLIILDIML--PKMNGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IRA +P++ +S + G DD + KP E++ARV A R + Sbjct: 62 EICKQIRAIKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121 Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + I + R + E +E +L + + N + + K Q+F Sbjct: 122 LLGNVSKQRDTLYIHGISIDQRARKVFINNEEIAFTTKEFDLLTFFVTNPNQVLNKEQLF 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 I+GL D A + V HI KLR+K+ + +++ GY + Sbjct: 182 ERIWGL-DSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRFNV 229 >gi|19551649|ref|NP_599651.1| two-component system, response regulators [Corynebacterium glutamicum ATCC 13032] gi|62389304|ref|YP_224706.1| two component response regulator [Corynebacterium glutamicum ATCC 13032] gi|21323169|dbj|BAB97797.1| Two-component system, response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Corynebacterium glutamicum ATCC 13032] gi|41324638|emb|CAF19120.1| putative two component response regulator [Corynebacterium glutamicum ATCC 13032] Length = 232 Score = 147 bits (371), Expect = 9e-34, Method: Composition-based stats. Identities = 54/231 (23%), Positives = 99/231 (42%), Gaps = 14/231 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + D L +G S D+ ++ L G Sbjct: 4 ILIVEDEESLADPLAFLLRKEGFDTIIAGDGPTALVEFSRNEIDIVLLDLML--PGMSGT 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 ++ + +R+ S VP+I ++ S + + G DD V KP RE++AR+ A+ RR Sbjct: 62 DVCKELRSVSTVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLRRRGV 121 Query: 120 --------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + + E G +R+ D V GE +P +E +LEYL+ N G+ + + Sbjct: 122 TETEAEELPLDDQILEGGRVRMDVDSHTVTVGGEPVSMPLKEFDLLEYLLRNAGRVLTRG 181 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221 Q+ I+G D + ++ H+ +LR K+ + + R LGY + Sbjct: 182 QLIDRIWGA-DYVGDTKTLDVHVKRLRSKIEEEPSRPRYLVTVRGLGYKFE 231 >gi|291006081|ref|ZP_06564054.1| two-component response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 237 Score = 147 bits (371), Expect = 9e-34, Method: Composition-based stats. Identities = 44/224 (19%), Positives = 91/224 (40%), Gaps = 9/224 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD V+D G ++E E L + + D+ ++ L G LE Sbjct: 15 LVVDDDTSVRDVVRRYLQRAGYAVELAGDGETALRLHAERKPDLVVLDLML--PGVGGLE 72 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYRR 118 + R +R +VP++ ++ + + G DD V KP R + + + Sbjct: 73 VCRRLRERGEVPVVMLTALGEESDRVVGLEQGADDYVVKPFSPRELVLRVASILRRARTS 132 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 G +R+ D R + G L RE +L +L+ + G+ ++ ++ ++ Sbjct: 133 QPAEGEVLTDGALRLDLDARRGTLDGGELALTGREFDLLVFLLRHPGRAFSRAELLEQVW 192 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221 G + + V H+ +LR+K+ +++ +GY D Sbjct: 193 GW--SFGDHSTVTVHMRRLREKVEPDPARPVRINTVWGVGYRYD 234 >gi|300781686|ref|ZP_07091540.1| response regulator [Corynebacterium genitalium ATCC 33030] gi|300533393|gb|EFK54454.1| response regulator [Corynebacterium genitalium ATCC 33030] Length = 232 Score = 147 bits (371), Expect = 9e-34, Method: Composition-based stats. Identities = 36/228 (15%), Positives = 81/228 (35%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V++ +G + + + D++ ++ L Sbjct: 3 ILVVDDEQAVRESLRRSLQFNGYDVALAKDGQEALASIEQEQPDLTVLDVM--MPQLDGL 60 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPI--------HHREILARV 112 + R +R+ P++ ++ + + D+G DD + KP + Sbjct: 61 GVCRELRSSGYDRPILMLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLLRRAR 120 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 A ++ + + + RD L R E +L L+ N K + + + Sbjct: 121 ADAIQQDAEGGSELSFEDLHLDISSRDVRRGDRHISLTRTEFSLLHLLLRNPRKVLTRQK 180 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I ++G + N +E +I LR+K + + R +GY + Sbjct: 181 ILEEVWG-HEFPSSGNALEVYIGYLRRKTEADGEPRLIHTVRGVGYVM 227 >gi|322419045|ref|YP_004198268.1| winged helix family two component transcriptional regulator [Geobacter sp. M18] gi|320125432|gb|ADW12992.1| two component transcriptional regulator, winged helix family [Geobacter sp. M18] Length = 227 Score = 147 bits (371), Expect = 9e-34, Method: Composition-based stats. Identities = 37/228 (16%), Positives = 87/228 (38%), Gaps = 9/228 (3%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEK 59 + ++I+D + + +G + + + D+ ++ L G Sbjct: 3 VILIIEDEKDLAELISFNLQQEGYKTVISHDGAEGLEAANRLQPDLILLDLMLPGMLGTD 62 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-----ARVAA 114 V + R S +P++ ++ + F+ G DD V KP RE++ Sbjct: 63 VCKSIRKSEKTSHIPVMMLTARGEEIDKVVGFEVGADDYVVKPFSTRELMLRIKAILRRN 122 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + G I + ++ V G+ E ++L L+ G+ ++ + Sbjct: 123 ANANSPAESAIINVGCISIDTERHLVTVDGKEVSFTTTEFKLLYTLVMRFGRVQSRDVLL 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 ++G ++ + V++H+++LR K+ D + + R GY ++ Sbjct: 183 RDVWG-YNFVEDTRTVDTHVTRLRTKMGEAG--DMIKTVRGFGYKLEV 227 >gi|326204220|ref|ZP_08194080.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] gi|325985731|gb|EGD46567.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] Length = 238 Score = 147 bits (371), Expect = 9e-34, Method: Composition-based stats. Identities = 45/227 (19%), Positives = 87/227 (38%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 ++IDD + + +G + + + + S D+ ++ L Sbjct: 6 ILIIDDEPGIVKMLETILRKEGYTSISSAFTGQEAMEKISRNLYDLIVLDVML--PDTDG 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH------REILARVAA 114 L + IR H+ VP++ ++ L G DD + KP + + R Sbjct: 64 FRLCQEIRRHTAVPILFLTARSGDLDKLTGLGIGGDDYITKPFNPLEVAARINVQFRRLE 123 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 Y+ + GP+ + V G+ P P +E +L +L + + Q++ Sbjct: 124 QYQNAGQTTEINRFGPVAIDRKAAQLLVDGQEVPCPAKEFELLLFLTDHPNQVFTSGQLY 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 I+G +D +E V HI +LRKK+ + + + R +GY Sbjct: 184 EHIWG-YDSIGDEKTVSIHIMRLRKKIERDAKNPSLIVNIRGIGYKF 229 >gi|255025903|ref|ZP_05297889.1| hypothetical protein LmonocytFSL_05350 [Listeria monocytogenes FSL J2-003] Length = 225 Score = 147 bits (371), Expect = 9e-34, Method: Composition-based stats. Identities = 41/223 (18%), Positives = 91/223 (40%), Gaps = 5/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +G + + E + + + ++ I+ Sbjct: 4 ILVVDDDRHILKLVGHYLRAEGFRVLEASDGVEAEKIIETEQVHLAVIDVM--MPNMDGF 61 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119 EL + +RA + +P+I ++ +L F+ G DD V KP E++ R+ A + R Sbjct: 62 ELCQKMRASYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELIFRIRALLRRSN 121 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + S + G I + ++ + +P +E +L L + G+ + ++ I+ Sbjct: 122 QASEVKINIGNITIDQKSYGIKIGNQERMIPVKEFELLYQLASYPGRIFTREELIERIW- 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 D + V+ HI +LR + + + R +GY ++ Sbjct: 181 QRDYDGSDRTVDVHIKRLRDHFDEEKDGIRIVTVRGVGYKLEE 223 >gi|229098996|ref|ZP_04229931.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus Rock3-29] gi|228684494|gb|EEL38437.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus Rock3-29] Length = 230 Score = 147 bits (371), Expect = 9e-34, Method: Composition-based stats. Identities = 42/228 (18%), Positives = 91/228 (39%), Gaps = 10/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D +++ +G + + E D+ ++ L Sbjct: 5 ILLVEDDISIQEMVEKYLIKEGFQVTIASDGEKGVNTYLKGSFDLIILDIM--MPKLDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115 E+ RIIR S VP++ +S + G DD + KP E+ R + Sbjct: 63 EVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 Y + + + G + + E G L +E IL+ + N+ + K QI++ Sbjct: 123 YSTTETTEKMIQIGDLTIDPINFTVEKNGNPLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 ++ + ++NV+ H+ +LR+K+ + + + + +GY ++ Sbjct: 183 LVWNE-EYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLEV 229 >gi|149277746|ref|ZP_01883886.1| two-component response regulator [Pedobacter sp. BAL39] gi|149231434|gb|EDM36813.1| two-component response regulator [Pedobacter sp. BAL39] Length = 229 Score = 147 bits (371), Expect = 9e-34, Method: Composition-based stats. Identities = 45/225 (20%), Positives = 88/225 (39%), Gaps = 10/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 +++DD + + +G + N+ + + D+ ++ + G + Sbjct: 8 ILIVDDEPDILELIEYNLKKEGYQVFVANNGQEGITVAKKVHPDLIILDIMMPKMDGIEA 67 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIY 116 L R I ++ ++ + + F+ G DD + KPI R I A + Sbjct: 68 CRLMRAIPEFKNTFMVFLTARSEEYSEIAGFNVGADDYIAKPIKPRALVSRINAILRRNS 127 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 +VS+N+ E G + + + GE L ++E +L L + GK + I Sbjct: 128 SSDEVSDNKVEIGDLVIDREAYLVFQNGEKVVLAKKEFELLYLLASKPGKVYTRESILKN 187 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 I+ V ++ HI KLR+KL V + + +GY + Sbjct: 188 IW-EDSVVVTNRTIDVHIRKLREKLGE----RYVATVKGVGYKFE 227 >gi|88855714|ref|ZP_01130377.1| two-component system, regulatory protein [marine actinobacterium PHSC20C1] gi|88815038|gb|EAR24897.1| two-component system, regulatory protein [marine actinobacterium PHSC20C1] Length = 230 Score = 147 bits (371), Expect = 9e-34, Method: Composition-based stats. Identities = 43/222 (19%), Positives = 82/222 (36%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++D G ++ S D+ ++ L Sbjct: 7 ILIVDDEPNIRDLLTTSLRFAGFAVRAVGSGAQTISAVLEEEPDLIILDVML--PDMNGF 64 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPI--HHREILARVAAIYRR 118 + + +RA P++ ++ + + G DD V KP + Sbjct: 65 GVTKRLRASGYTSPILFLTAKDDTEDKIMGLTVGGDDYVTKPFSLDEIVARIKAILRRTM 124 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 G + + D + + E L E ++L YLM N + ++K QI ++ Sbjct: 125 QDDEETIIRAGDLTMDQDTHEVSIGSEQIELSPTEFKLLRYLMLNPNRVLSKAQILDHVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D + +VES+IS LR+KL + +KR GY + Sbjct: 185 -EYDFNGDAGIVESYISYLRRKLDIHTEEPLIQTKRGFGYML 225 >gi|256830427|ref|YP_003159155.1| winged helix family two component transcriptional regulator [Desulfomicrobium baculatum DSM 4028] gi|256579603|gb|ACU90739.1| two component transcriptional regulator, winged helix family [Desulfomicrobium baculatum DSM 4028] Length = 231 Score = 147 bits (371), Expect = 9e-34, Method: Composition-based stats. Identities = 46/223 (20%), Positives = 87/223 (39%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 V+I+D + + G + L S R D+ ++ L G V Sbjct: 5 IVVIEDEPDIANLLAFHLKSGGYDCFVARDGKKGLQLVQSERPDLVLLDLMLPGMSGTDV 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + + + +P+I ++ + F+ G DD V KP RE++ R+ + RR Sbjct: 65 CKAVKGSPECAHIPIIMLTARGDEVDRILGFELGADDYVIKPFSPRELMLRIKTVLRRNV 124 Query: 121 VSNNRAETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + V G L E + + N GK +++ Q+ S Sbjct: 125 NILPKVAHWQRDGLAADFEAYTLLVDGVDAHLTPTEFNLFGEFVRNEGKVLSREQLLSNA 184 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G ++ V++H+ +LRKKL D +++ R +GY + Sbjct: 185 WG-YEFEGYSRTVDTHVRRLRKKLGPY--ADWLETVRGIGYRM 224 >gi|269794287|ref|YP_003313742.1| CheY-like receiver domain/winged-helix DNA-binding domain-containing response regulator [Sanguibacter keddieii DSM 10542] gi|269096472|gb|ACZ20908.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Sanguibacter keddieii DSM 10542] Length = 244 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 42/230 (18%), Positives = 80/230 (34%), Gaps = 17/230 (7%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + G +G E + D ++ L G L Sbjct: 17 ILIVEDEPAIATAIAQRLGAEGWRTEVARDGLSGVEAAARMLPDAVVLDVML--PGIDGL 74 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILAR 111 E+ R I+A VP++ ++ L G DD + KP R + R Sbjct: 75 EVCRRIQAERPVPILMLTARDDETDMLIGLGVGADDYMTKPFSMRELVARLKALLRRVDR 134 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 A + G + + R + L E +L L ++ + Sbjct: 135 AAQASSAPDGAEPPMVIGDVVIDRAQRRVHRAEQEIHLTPTEFELLVMLASSPKTVQTRE 194 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ + ++ D + V+SHI LR+KL G D + + +GY+ + Sbjct: 195 RLLAEVWDWADASG-TRTVDSHIKALRRKL----GADLIRTVHGVGYAFE 239 >gi|289167540|ref|YP_003445809.1| response regulator [Streptococcus mitis B6] gi|288907107|emb|CBJ21941.1| response regulator [Streptococcus mitis B6] Length = 218 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 50/220 (22%), Positives = 101/220 (45%), Gaps = 6/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++++G D G + L+ + +V+ + + L Sbjct: 3 ILIVEDEEMIREGVSDYLTDCGYETIEAADGQEA--LEKFSSYEVALVLLDIQMPKLNGL 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ IR SQVP++ ++ + + + F S D + KP + RV AI++R Sbjct: 61 EVLAEIRKTSQVPVLMLTAFQDEEYKMSAFASLADGYLEKPFSLSLLKVRVDAIFKRYYD 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + +V + + GE + +E IL+YL+ N G+ + ++QI A++ Sbjct: 121 TGRVFSYKDTKVDFESYSASLSGEEVAINAKELEILDYLVKNEGRALTRSQIIDAVWKAT 180 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 DE + V++ +I +LRKKL D + + R +GY ++ Sbjct: 181 DEVPFDRVIDVYIKELRKKLDL----DCILTVRNVGYKLE 216 >gi|302873565|ref|YP_003842198.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] gi|307688255|ref|ZP_07630701.1| two component transcriptional regulator, winged helix family protein [Clostridium cellulovorans 743B] gi|302576422|gb|ADL50434.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] Length = 231 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 38/229 (16%), Positives = 83/229 (36%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + G ++ + D+ ++ L Sbjct: 4 ILIVEDDLTIAKLQRDYLEVKGFEVDIATDGVEGLDKIKNNSYDLVILDIML--PKLHGY 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + I+ P++ +S + G DD + KP E++ARV A + + Sbjct: 62 NVMKSIQDEKDFPVLMVSAKKEEIDKIKGLSLGADDYITKPFSPGELVARVEAHIKNYER 121 Query: 122 SNNRAETGPIRVFS---------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 N+ + P R + G+ L ++E +L YL+ N + + + Sbjct: 122 LKNKFGSKPQDNDIIIRGLQVKKPSRQVFINGKEVNLTQKEFDLLLYLVENPNRVFGREE 181 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 +F I+GL + + + HI ++R K+ N +++ GY Sbjct: 182 LFERIWGL-EALGDNATITVHIGRIRDKIESNPSEPQYIETVWGAGYRF 229 >gi|126658415|ref|ZP_01729564.1| two-component response regulator [Cyanothece sp. CCY0110] gi|126620347|gb|EAZ91067.1| two-component response regulator [Cyanothece sp. CCY0110] Length = 252 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 46/232 (19%), Positives = 97/232 (41%), Gaps = 14/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA-------REDVSAIEAFLI 54 ++++D +++D + D+G + N+ L + + L+ Sbjct: 21 ILVVEDEDVIRDMIVLALEDEGYDITAVNNGRSALNLLQEENKNAKVTETEFDLLILDLM 80 Query: 55 GKGEKVLELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113 L++ R++ + +P++ +S S + + G DD + KP RE++AR Sbjct: 81 LPQVNGLDICRLLRYQGNIIPILILSAKASETDRVLGLEVGADDYLTKPFSMRELVARCR 140 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQ----GEVFPLPRRERRILEYLMANRGKRVA 169 A+ RR ++N+ + + E + + L +E R+LE M+ + + Sbjct: 141 ALIRRQNLTNSSSSSVKQFRDIILYTQECRVTVGEQEIALSPKEYRLLELFMSYPRRVWS 200 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + Q+ I+G D + V+ HI LR+KL + + + + R GY Sbjct: 201 REQLIEQIWG-PDFLGDTKTVDVHIRWLREKLEQDPSQPEYLITVRGFGYRF 251 >gi|327441682|dbj|BAK18047.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Solibacillus silvestris StLB046] Length = 222 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 43/222 (19%), Positives = 90/222 (40%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++ +G + L D++ ++ + Sbjct: 3 ILVVDDDAFIRKLIGIHLKKEGFEALFASDGMEALNLLQQEPVDLAIVDVM--MPKMDGV 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L + + VP++ ++ +L F +G DD + KP +E+L RV AI RR + Sbjct: 61 TLTKNLVEIG-VPVLMLTAKTTLDDKEKGFLAGADDYMVKPFEPKELLFRVRAILRRFQK 119 Query: 122 SNNRAETGPIR-VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + + +V +V LP +E +L L + + Q+ ++G Sbjct: 120 TERSQIKIANMLIDRQTYEVKVGEQVSLLPLKEFELLSILCSRPEVVFTRDQLMEQVWG- 178 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D ++ + +HI +LR +L + + R +GY I+ Sbjct: 179 YDYDGDDFTLTTHIKRLRSRLEEVNAQVKIQTVRGIGYKIEE 220 >gi|229017208|ref|ZP_04174118.1| Two-component response regulator vanR [Bacillus cereus AH1273] gi|229023385|ref|ZP_04179889.1| Two-component response regulator vanR [Bacillus cereus AH1272] gi|228737946|gb|EEL88438.1| Two-component response regulator vanR [Bacillus cereus AH1272] gi|228744088|gb|EEL94180.1| Two-component response regulator vanR [Bacillus cereus AH1273] Length = 247 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 39/229 (17%), Positives = 84/229 (36%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +G ++ ++ E + ++ ++ ++ + Sbjct: 21 ILIVDDDRDIIRFINVNLEQEGFTVFSADNGEEALEVLNNNDVQLAILDVM--MPQMDGI 78 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARVA 113 EL R IR +P++ +S S + F +G DD + KP E Sbjct: 79 ELCRRIREKYSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 138 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 ++V + + + R + GE L + E IL + R + +I Sbjct: 139 FNQNTVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYDILCLMAVTRNRVFTMEEI 198 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + +++ N V HI++LR K+ + + +GY I+ Sbjct: 199 YESVWKERAYE-SNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIE 246 >gi|293400081|ref|ZP_06644227.1| DNA-binding response regulator [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306481|gb|EFE47724.1| DNA-binding response regulator [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 229 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 53/228 (23%), Positives = 97/228 (42%), Gaps = 13/228 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD +++ L ++G + ++ E + +D+ ++ G + Sbjct: 6 LIVDDNKEIREVVNVLLSNEGYIVNEADNG--AEAITKCEAQDLIILDIM--MPGMDGFK 61 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 R IR + VP++ ++ Q D F+SG DD + KP + E+L+RV A+ RR V Sbjct: 62 TCRRIRELTNVPILFLTSKTLDQDKEDGFNSGGDDYLIKPFSYSELLSRVNALIRRFYVY 121 Query: 123 N--------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N E ++V + V E L E RIL+ L+ N + + +++ Sbjct: 122 RGKSNIEESNIIERNDLKVDQNSNRVWVGDEEVNLTEIEYRILQLLITNPKRVFSNKELY 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKK-LRNKLGFDPVDSKRFLGYSID 221 +I+ N + HI LRKK L + + + GY D Sbjct: 182 ESIWDESYLYTANNTIMVHIRNLRKKLLVDPSNPKYIRTIWGKGYRFD 229 >gi|197304013|ref|ZP_03169045.1| hypothetical protein RUMLAC_02750 [Ruminococcus lactaris ATCC 29176] gi|197296981|gb|EDY31549.1| hypothetical protein RUMLAC_02750 [Ruminococcus lactaris ATCC 29176] Length = 230 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 47/227 (20%), Positives = 88/227 (38%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + D G +E N E + D+ ++ L G Sbjct: 5 ILIVEDEESIADLEKDYLELSGFEVEVANDGETGLRRGLAVEFDLIILDLML--PGVDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR P+I +S + G DD + KP E++ARV A R + Sbjct: 63 EICRQIRGQKNTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARYER 122 Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N+ E +++ R V GE +E +L +L + +K ++F Sbjct: 123 LIGSVVEQNDVIEIRGLKIDRTARRVWVNGEERSFTTKEFDLLSFLAGHPNHVYSKEELF 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 I+ + + + V HI K+R+K+ + +++ +GY Sbjct: 183 REIWDM-ESIGDIATVTVHIKKIREKIEYDTSHPQYIETIWGVGYRF 228 >gi|148264043|ref|YP_001230749.1| two component heavy metal response transcriptional regulator [Geobacter uraniireducens Rf4] gi|146397543|gb|ABQ26176.1| two component heavy metal response transcriptional regulator, winged helix family [Geobacter uraniireducens Rf4] Length = 223 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 45/223 (20%), Positives = 93/223 (41%), Gaps = 5/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + G +++ N E L S D+ ++ L G Sbjct: 3 ILVVEDEIKTSAFLRKGLRESGFTVDVANDGEEGLDLALSREYDLIILDVML--PGVDGW 60 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119 ++ + IR P++ ++ ++Q + + G DD + KP E+LAR+ I R Sbjct: 61 QIIKRIRGTKRDTPVLFLTARDAVQDRIKGLELGADDYLVKPFAFSELLARIRTILRRGP 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + + G G+ L +E +L L G+ + +T+I I+ Sbjct: 121 VRTLELIRIADLEIDLMGHRVMRGGKRLDLTPKEFALLSLLARRTGEVLTRTRIAERIWD 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + D + NVV+ H+ +LR K+ + + + R +GY ++ Sbjct: 181 I-DFESDTNVVDVHMRRLRAKVDDPFEHKLIHTVRGVGYVLEE 222 >gi|228475679|ref|ZP_04060397.1| transcriptional regulatory protein [Staphylococcus hominis SK119] gi|228270461|gb|EEK11896.1| transcriptional regulatory protein [Staphylococcus hominis SK119] Length = 233 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 48/224 (21%), Positives = 92/224 (41%), Gaps = 12/224 (5%) Query: 4 LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63 ++DD + D +G + L D+ ++ L G +E+ Sbjct: 7 VVDDEKPIADILEFNLKKEGYEVHCAYDGNDAVDLIYEEEPDIVLLDIML--PGRDGMEV 64 Query: 64 PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123 R +R +P+I ++ S + + G DD V KP RE++ARV A RR Sbjct: 65 CREVRKKYDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYAQP 124 Query: 124 --------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 N I ++ + + +GE L RE + YL + G+ + + + Sbjct: 125 AQESEGTTNEIAIKDIVIYPEAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHLLQ 184 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218 ++G +D + V+ I +LR+K+ + + + ++R +GY Sbjct: 185 TVWG-YDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGY 227 >gi|194015744|ref|ZP_03054360.1| regulatory protein VanR [Bacillus pumilus ATCC 7061] gi|194013148|gb|EDW22714.1| regulatory protein VanR [Bacillus pumilus ATCC 7061] Length = 231 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 47/227 (20%), Positives = 88/227 (38%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + D G ++ + E + + + ++ G + Sbjct: 5 ILIVEDDQDIGDLLQESLTRAGYEVQRAMNGEQALKFVDDS---LDLVILDVMMPGISGI 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E + +RA S VP++ ++ S + +G DD + KP E+ ARV A RR V Sbjct: 62 ETCQQMRASSNVPILFLTAKSSTFDKTEGLLAGGDDYMTKPFSQEELHARVIAQLRRYTV 121 Query: 122 SNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + E V + + + L E R+L+ LM+ R K + I+ Sbjct: 122 YQEKKEQEETFLVGGKLRVSEEFNEVWKGNQQLKLSDLEYRMLKLLMSRRNKIFSAQNIY 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 +++G N V HI KLR K+ + + ++ GY Sbjct: 182 ESVWGQPYFYCSNNTVMVHIRKLRAKIEDDPARPVYIKTEWGRGYRF 228 >gi|218248212|ref|YP_002373583.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 8801] gi|218168690|gb|ACK67427.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8801] Length = 250 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 46/232 (19%), Positives = 94/232 (40%), Gaps = 16/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQS-------SAREDVSAIEAFLI 54 ++++D +++D + G + + L + D+ ++ L Sbjct: 21 ILVVEDEDVIRDMITIALEEQGYEVITASDGRTALSLLQDVATLGTESGFDLVVLDLML- 79 Query: 55 GKGEKVLELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113 L++ R++ ++ VP++ +S S + + G DD + KP RE++AR Sbjct: 80 -PQVNGLDICRLLRYNNNIVPILILSAKASETDRVLGLEVGADDYLTKPFSMRELVARCR 138 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQG----EVFPLPRRERRILEYLMANRGKRVA 169 A+ RR +N + E + E L +E R+LE M+ + + Sbjct: 139 ALIRRQDFNNVSSAPVRKFKDISLYPEECRVVVRGEEINLSPKEYRLLELFMSYPRRVWS 198 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + Q+ ++G D + V+ HI LR+KL + + + + R GY Sbjct: 199 REQLIDQVWGA-DFLGDTKTVDVHIRWLREKLETDPSQPEYLITVRGFGYRF 249 >gi|54026584|ref|YP_120826.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] gi|54018092|dbj|BAD59462.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] Length = 225 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 43/220 (19%), Positives = 87/220 (39%), Gaps = 5/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + +G R D+ ++ L G + Sbjct: 5 ILVVDDDMALAEMLTIVLRGEGFDPHVVGDGTQALAAVREIRPDLVLLDLML--PGMNGI 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R++RA S VP++ ++ + +SG DD + KP +E++ARV A RR + Sbjct: 63 DVCRVLRADSGVPIVMLTAKTDTVDVVLGLESGADDYIVKPFKPKELVARVRARLRRTEE 122 Query: 122 SNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 I + G+ L E +L L + + + ++G Sbjct: 123 EPAELLSIADIVIDVPAHKVTRGGQQISLTPLEFDLLVALARKPRQVFTREVLLEQVWG- 181 Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219 + A + +V H+ +LR K+ + + V + R +GY Sbjct: 182 YRHAADTRLVNVHVQRLRAKVEKDPENPEIVLTVRGVGYK 221 >gi|332204624|gb|EGJ18689.1| response regulator [Streptococcus pneumoniae GA47901] Length = 218 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 51/220 (23%), Positives = 101/220 (45%), Gaps = 6/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++++G D G + SS +V+ + + L Sbjct: 3 ILIVEDEEMIREGVSDYLTDCGYETIEAADGQEALDQFSS--YEVALVLLDIQMPKLNGL 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ IR SQVP++ ++ + + + F S D + KP + RV AI++R Sbjct: 61 EVLAEIRKTSQVPVLMLTAFQDEEYKMSAFASLADGYLEKPFSLSLLKVRVDAIFKRYYD 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + +V + + G+ P+ +E IL+YL+ N G+ + ++QI A++ Sbjct: 121 TGRIFSYKDTKVDFESYSASIAGQEVPINAKELEILDYLVKNEGRALTRSQIIDAVWKAT 180 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 DE + V++ +I +LRKKL D + + R +GY ++ Sbjct: 181 DEVPFDRVIDVYIKELRKKLDL----DCILTVRNVGYKLE 216 >gi|78223889|ref|YP_385636.1| two component transcriptional regulator [Geobacter metallireducens GS-15] gi|78195144|gb|ABB32911.1| two component transcriptional regulator, winged helix family [Geobacter metallireducens GS-15] Length = 226 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 44/224 (19%), Positives = 87/224 (38%), Gaps = 7/224 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61 ++I+D + + +G D+ ++ L G +V Sbjct: 5 LIIEDEKDLAELVSFNLEKEGYRTIAAPDGISGLDEAQRQVPDLILLDLMLPGMMGTEVC 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118 ++ + +++P+I ++ + F+ G DD V KP RE + V Sbjct: 65 KILKKSEKTAKIPVIMLTARGEEIDRVVGFEVGADDYVVKPFSTRELLLRIKAVLRRSLP 124 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + S GPI + D V GE L E ++L L G+ ++ + ++ Sbjct: 125 DEPSGKTMRIGPIAIDPDRHTVAVAGEEIVLTTTEFKLLLNLAERLGRVQSRDLLLKNVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 G ++ + V++HI++LR KL D + + R GY ++ Sbjct: 185 G-YNYVGDTRTVDTHITRLRTKLGPAG--DLIKTVRGFGYKMEE 225 >gi|47096766|ref|ZP_00234349.1| DNA-binding response regulator [Listeria monocytogenes str. 1/2a F6854] gi|254829514|ref|ZP_05234201.1| DNA-binding response regulator [Listeria monocytogenes FSL N3-165] gi|254900963|ref|ZP_05260887.1| hypothetical protein LmonJ_14151 [Listeria monocytogenes J0161] gi|254913823|ref|ZP_05263835.1| DNA-binding response regulator [Listeria monocytogenes J2818] gi|254938212|ref|ZP_05269909.1| DNA-binding response regulator [Listeria monocytogenes F6900] gi|47014852|gb|EAL05802.1| DNA-binding response regulator [Listeria monocytogenes str. 1/2a F6854] gi|258601929|gb|EEW15254.1| DNA-binding response regulator [Listeria monocytogenes FSL N3-165] gi|258610824|gb|EEW23432.1| DNA-binding response regulator [Listeria monocytogenes F6900] gi|293591840|gb|EFG00175.1| DNA-binding response regulator [Listeria monocytogenes J2818] Length = 225 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 41/223 (18%), Positives = 91/223 (40%), Gaps = 5/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +G + + E + + + ++ I+ Sbjct: 4 ILVVDDDRHILKLVGHYLRAEGFRVLEASDGVEAEKIVETEQVHLAVIDVM--MPNMDGF 61 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119 EL + +RA + +P+I ++ +L F+ G DD V KP E++ R+ A + R Sbjct: 62 ELCQKMRASYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELVFRIRALLRRSN 121 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + S + G I + ++ + +P +E +L L + G+ + ++ I+ Sbjct: 122 QASEVKINIGNITIDQKSYGIKIGNQERMIPVKEFELLYQLASYPGRIFTREELIERIW- 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 D + V+ HI +LR + + + R +GY ++ Sbjct: 181 QRDYDGSDRTVDVHIKRLRDHFDEEKDGIRIVTVRGVGYKLEE 223 >gi|291299613|ref|YP_003510891.1| winged helix family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290568833|gb|ADD41798.1| two component transcriptional regulator, winged helix family [Stackebrandtia nassauensis DSM 44728] Length = 225 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 49/221 (22%), Positives = 93/221 (42%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + D A +G ++ N + DV ++ L G Sbjct: 3 LLIVEDEKRLADVVAAGLTAEGYGVDVANDGTTGFSMARQNPYDVIILDIML--PGMNGY 60 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119 ++ R +R + P++ ++ D D G DD + KP + AR+ A + R + Sbjct: 61 QVCRKLREAEVRTPILMLTAKDGEHDEADGLDLGADDYLTKPFSFVVLQARIRALLRRSV 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + E G + + + L +E +LEYL + G+ V+KT++ ++ Sbjct: 121 STAPTVWEFGDLVIDPAAKTVRRGEADISLTAKEFAVLEYLASRAGEVVSKTEVLEHVWD 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 F + N+VE +IS LR+KL G + + R GY + Sbjct: 181 -FAYDGDVNIVEVYISYLRRKLDAPFGRQAITTLRGAGYRL 220 >gi|322377335|ref|ZP_08051826.1| DNA-binding response regulator VncR [Streptococcus sp. M334] gi|321281535|gb|EFX58544.1| DNA-binding response regulator VncR [Streptococcus sp. M334] Length = 218 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 49/220 (22%), Positives = 99/220 (45%), Gaps = 6/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++++G D G + + SS + ++ L Sbjct: 3 ILIVEDEEMIREGISDYLTDCGYEIIEAADGQEALEKFSSYEVTLVLLDI--QMPKLNGL 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ IR SQVP++ ++ + + + F S D + KP + RV AI++R Sbjct: 61 EVLAEIRKTSQVPVLMLTAFQDEEYKMSAFASLADGYLEKPFSLSLLKVRVDAIFKRYYD 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + +V + + G+ + +E IL+YL+ N G+ + ++QI A++ Sbjct: 121 TGRIFSYKDAKVDFESYSASLAGQEVAINAKELEILDYLVKNEGRALTRSQIIDAVWKAT 180 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 DE + V++ +I +LRKKL D + + R +GY ++ Sbjct: 181 DEVPFDRVIDVYIKELRKKLDL----DCILTVRNVGYKLE 216 >gi|319893721|ref|YP_004150596.1| Two-component response regulator SA14-24 [Staphylococcus pseudintermedius HKU10-03] gi|317163417|gb|ADV06960.1| Two-component response regulator SA14-24 [Staphylococcus pseudintermedius HKU10-03] gi|323463221|gb|ADX75374.1| two-component response regulator VicR [Staphylococcus pseudintermedius ED99] Length = 233 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 48/224 (21%), Positives = 94/224 (41%), Gaps = 12/224 (5%) Query: 4 LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63 ++DD + D +G + L D+ ++ L G+ +E+ Sbjct: 7 VVDDEKPIADILEFNLKKEGYEVFVAYDGNDAVDLIYEKEPDIVLLDIML--PGQDGMEV 64 Query: 64 PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123 R +R ++P+I ++ S + + G DD V KP RE++ARV A RR Sbjct: 65 CREVRKKFEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYTQP 124 Query: 124 NRAETGPIR--------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 ++ ++ D + +GE L RE + YL + G+ + + + Sbjct: 125 SQENHMQTNEITIKDIVIYPDAYSIKKRGEDIDLTHREFELFHYLSKHMGQVMTREHLLQ 184 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218 ++G +D + V+ I +LR+K+ + D + ++R +GY Sbjct: 185 TVWG-YDYFGDVRTVDVTIRRLREKIEDDPSHPDYIVTRRGVGY 227 >gi|229112135|ref|ZP_04241678.1| hypothetical protein bcere0018_43780 [Bacillus cereus Rock1-15] gi|228671458|gb|EEL26759.1| hypothetical protein bcere0018_43780 [Bacillus cereus Rock1-15] Length = 229 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 47/229 (20%), Positives = 89/229 (38%), Gaps = 11/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D + + + ++ +S E + D+ ++ L Sbjct: 4 ILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQIALQEDYDLIILDIML--PKMNGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IRA +P++ +S + G DD + KP E++ARV A R + Sbjct: 62 EICKQIRAVKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIARYER 121 Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + I + R + E +E +L + + N + + K Q+F Sbjct: 122 LLGNVSKQRDTLYIHGISIDQRARKVFINNEEVAFTTKEFDLLTFFVTNPNQVLNKEQLF 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 I+GL D A + V HI KLR+K+ + +++ GY + Sbjct: 182 ERIWGL-DSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRFNV 229 >gi|166031592|ref|ZP_02234421.1| hypothetical protein DORFOR_01292 [Dorea formicigenerans ATCC 27755] gi|166028569|gb|EDR47326.1| hypothetical protein DORFOR_01292 [Dorea formicigenerans ATCC 27755] Length = 224 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 44/225 (19%), Positives = 93/225 (41%), Gaps = 8/225 (3%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEK 59 M ++D + +++ I G GF + + ++ ++ L G + Sbjct: 1 MIFCVEDDSNIRELVIYTLETTGFKARGFEDGKEFLEALALETPELILLDIMLPGMDGLE 60 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAI 115 +L + + +P+I ++ + + D+G DD V KP E+++R+ Sbjct: 61 LLSKLKASPKNRDIPVIMLTAKGAEYDKVKALDAGADDYVTKPFGMMELVSRIKAVLRRT 120 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + + G I + + + GEV L +E +L+ LM N + + + Sbjct: 121 QKDTQDPQDVIVLGDIEMNTKKHEVTADGEVVTLTLKEYELLKRLMKNPNIVMTRDCLLE 180 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I+G +D E V+ H+ LR+KL +++ R +GY + Sbjct: 181 DIWG-YDFDGETRTVDVHVRTLRQKLGKSGEK--IETVRGVGYRM 222 >gi|307706889|ref|ZP_07643691.1| response regulator [Streptococcus mitis SK321] gi|307617762|gb|EFN96927.1| response regulator [Streptococcus mitis SK321] Length = 218 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 48/220 (21%), Positives = 99/220 (45%), Gaps = 6/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++++G D G + L+ + +V+ + + L Sbjct: 3 ILIVEDEEMIREGVSDYLTDCGYETIEAADGQEA--LEKFSSYEVALVLLDIQMPKLNGL 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ IR SQVP++ ++ + + + F D + KP + RV AI++R Sbjct: 61 EVLAEIRKTSQVPVLMLTAFQDEEYKMSAFAFLADGYLEKPFSLSLLKVRVDAIFKRYYD 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 +V + + G+ + +E IL+YL+ N G+ + ++QI A++ Sbjct: 121 MGRVFSYKDAKVDFESYSASLAGQEVAINAKELEILDYLVKNEGRALTRSQIIDAVWKAT 180 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 DE + V++ +I +LRKKL D + + R +GY ++ Sbjct: 181 DEVPFDRVIDVYIKELRKKLDL----DCILTVRNVGYKLE 216 >gi|300813426|ref|ZP_07093772.1| putative alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300512463|gb|EFK39617.1| putative alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 229 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 37/224 (16%), Positives = 84/224 (37%), Gaps = 9/224 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D ++ +G ++ S E + S + + ++ L G Sbjct: 5 ILLVEDEEPIRKFVKINLEREGYTVFEAGSGEEGIDIARSKQPQIVVLDIML--PGVDGF 62 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIY 116 + +++R + +I ++ + G DD + KP + I + + Sbjct: 63 AVCKVLRKEFPNLGIIMLTAKAEDYDKIMGLQYGTDDYLTKPFNPTELTLRIKSLERRLE 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + N P ++ R E L E +I++ M N K + + +I Sbjct: 123 PEEENDENYIIQEPFKLDYYQRKFYKNDEEIELTPTEYQIMKIFMENPKKAMNRDEILKI 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219 ++G D + +V+ +I +LR K+ + +++ LGY Sbjct: 183 VWGN-DFIGDSKIVDVNIRRLRAKIEENPAKPEYIETVWGLGYR 225 >gi|229828178|ref|ZP_04454247.1| hypothetical protein GCWU000342_00235 [Shuttleworthia satelles DSM 14600] gi|229792772|gb|EEP28886.1| hypothetical protein GCWU000342_00235 [Shuttleworthia satelles DSM 14600] Length = 250 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 42/224 (18%), Positives = 91/224 (40%), Gaps = 5/224 (2%) Query: 1 MF--VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE 58 M ++++D + + + E D+ ++ L Sbjct: 20 MIHVLIVEDDPAIVKSLEDFLRGQEMQVTSAGGQEEALQKLQERPYDLVLLDITL--PDG 77 Query: 59 KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 + ++ Q P+I ++ + + FD G +D + KP RE+++R+ + R Sbjct: 78 SGYSVCNAVKRDYQTPVIFLTASGDENSVVTGFDLGAEDYIAKPFRPRELVSRIRNVLRH 137 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 K +N +RV D + L E R+L + NRG+ ++++Q+ A + Sbjct: 138 TKRQSNIERVQDLRVDLDSGRVFKGEQELSLSAMEYRLLGIFLENRGRILSRSQLLEAAW 197 Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 + V +N + +I +LR+K+ + + + R LGY ++ Sbjct: 198 DFAGDYVNDNTLSVYIKRLREKIESDPQNPTMIRTVRGLGYRME 241 >gi|218905898|ref|YP_002453732.1| DNA-binding response regulator [Bacillus cereus AH820] gi|228929721|ref|ZP_04092738.1| hypothetical protein bthur0010_44050 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|218536884|gb|ACK89282.1| DNA-binding response regulator [Bacillus cereus AH820] gi|228829900|gb|EEM75520.1| hypothetical protein bthur0010_44050 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 229 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 46/229 (20%), Positives = 89/229 (38%), Gaps = 11/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D + + + ++ +S E + D+ ++ L Sbjct: 4 ILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDYDLIILDIML--PKMNGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IRA +P++ +S + G DD + KP E++ARV A R + Sbjct: 62 EICKQIRAIKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIARYER 121 Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + I + R + E +E +L + + + + + K Q+F Sbjct: 122 LLGNVSKQRDTLYIHGISIDQRARKVFINNEEIAFTTKEFDLLTFFVTHPNQVLNKEQLF 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 I+GL D A + V HI KLR+K+ + +++ GY + Sbjct: 182 ERIWGL-DSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRFNV 229 >gi|254424776|ref|ZP_05038494.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] gi|196192265|gb|EDX87229.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] Length = 262 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 43/261 (16%), Positives = 89/261 (34%), Gaps = 44/261 (16%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A + + +G + + D+ ++ + G L Sbjct: 3 ILIVEDEADIAELIQLYLSKEGFRCHICRDGKTALDRFRLIQPDLIILDLMI--PGLDGL 60 Query: 62 ELP---RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 E+ R ++ ++ + +G DD + KP RE++ARV A+ RR Sbjct: 61 EVCARVRQQNEIKDPYIMMLTARGEEMDRIIGLSTGADDYIVKPFSPRELVARVRAVLRR 120 Query: 119 LKVSNNRAETGPIRVFSD-------------------------------------GRDPE 141 +++ T E Sbjct: 121 SLRGSHQPRTTYQTAHFTVDLDQRTASQKVVESVSREEGLEVEDSAEGNTSGQNAQNQLE 180 Query: 142 VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL 201 + L E +L M+ G+ ++Q+ ++G D +E VV++HI++LRKK+ Sbjct: 181 IAQIPLELTPLEFDLLATFMSYPGRVWNRSQLIDKLWGE-DFFGDERVVDTHIARLRKKI 239 Query: 202 R-NKLGFDPVDSKRFLGYSID 221 + V + +GY + Sbjct: 240 EPDPSAPTFVKTVVGVGYRFE 260 >gi|239828688|ref|YP_002951312.1| two component transcriptional regulator, winged helix family [Geobacillus sp. WCH70] gi|239808981|gb|ACS26046.1| two component transcriptional regulator, winged helix family [Geobacillus sp. WCH70] Length = 236 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 42/228 (18%), Positives = 87/228 (38%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + E D+ ++ L K + Sbjct: 6 ILVVDDEKPIADILQFNLQKEGYEVICAYDGEEALQKVEEVMPDLILLDIMLPQK--DGM 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR--------EILARVA 113 E+ R +R +P+I ++ S + + G DD V KP R + Sbjct: 64 EVCREVRKKYDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVRANLRRHTQ 123 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + N G + + D +GE L RE +L YL + G+ + + + Sbjct: 124 IVAQEETNDTNEIIIGSLVIRPDAYIVSKRGETIELTHREFELLHYLAKHIGQVMTREHL 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++G +D + V+ + +LR+K+ + + ++R +GY + Sbjct: 184 LQTVWG-YDYYGDVRTVDVTVRRLREKIEDNPSHPSWIVTRRGVGYYL 230 >gi|163816389|ref|ZP_02207755.1| hypothetical protein COPEUT_02578 [Coprococcus eutactus ATCC 27759] gi|158448386|gb|EDP25381.1| hypothetical protein COPEUT_02578 [Coprococcus eutactus ATCC 27759] Length = 239 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 46/223 (20%), Positives = 86/223 (38%), Gaps = 5/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G S E S + L + + + L+ G Sbjct: 16 ILIVEDDTNINNLLQEALSKAGYSCEQAFSGTEAKLLLNMQEHSYALMLLDLMLPGITGE 75 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + IR +P+I ++ SL + SG DD + KP RE+LAR+ R + Sbjct: 76 AVLEEIRKKGNLPVIVLTAKDSLDEKVKVLTSGADDYITKPFEIREVLARIQVQLRHTEE 135 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEV----FPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + R + + R+E ILE L+ N + +K IF Sbjct: 136 KEIKESNLSFREMVLNKATFQVSIGGKILPKITRQEFAILELLLRNPKQVFSKEDIFEYA 195 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + E ++ HIS +RKK++ + +++ +GY + Sbjct: 196 WDEP-YMGETKTLDVHISNIRKKIKTVTSEEYIETVWGIGYRL 237 >gi|163942751|ref|YP_001647635.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163864948|gb|ABY46007.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] Length = 221 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 43/224 (19%), Positives = 98/224 (43%), Gaps = 11/224 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D +++ +++ + L D+ ++ L Sbjct: 4 ILVIEDNPDIQELIREFLMAQNFTVDVVGAGTEGILLFQKNSYDLVLLDVML--PDIDGY 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYR 117 + +I+R S VP+I ++ + ++ + F+ G+DD + KP H+ + RV Sbjct: 62 SICKIMRGQSDVPIIMLTGLHNEESEIKGFELGIDDYITKPFHYTVFIKRVEAVLRRAAT 121 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + + + + S V G L +E I+ L+ NRGK ++++ + + + Sbjct: 122 KEAEAATILQFHELMLNSTAYAAYVHGNQIELTTKEFEIIYTLLQNRGKVLSRSDLLNKV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +G ++ + V+++HI LRKKL + + + +GY I+ Sbjct: 182 WG-YEHYGDVRVIDTHIKNLRKKLEIP----YIKTVKGIGYKIE 220 >gi|314934943|ref|ZP_07842302.1| DNA-binding response regulator YycF [Staphylococcus caprae C87] gi|313652873|gb|EFS16636.1| DNA-binding response regulator YycF [Staphylococcus caprae C87] Length = 233 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 49/224 (21%), Positives = 93/224 (41%), Gaps = 12/224 (5%) Query: 4 LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63 ++DD + D +G + L D+ ++ L G +E+ Sbjct: 7 VVDDEKPIADILEFNLKKEGYEVFCAYDGNDAVDLIYEEEPDIVLLDIML--PGNDGMEV 64 Query: 64 PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123 R +R ++P+I ++ S + + G DD V KP RE++ARV A RR Sbjct: 65 CREVRKKFEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYSQP 124 Query: 124 --------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 N I ++ D + +GE L RE + YL + G+ + + + Sbjct: 125 AQEVSGATNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHLLQ 184 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218 ++G +D + V+ I +LR+K+ + + + ++R +GY Sbjct: 185 TVWG-YDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGY 227 >gi|153955231|ref|YP_001395996.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|219855657|ref|YP_002472779.1| hypothetical protein CKR_2314 [Clostridium kluyveri NBRC 12016] gi|146348089|gb|EDK34625.1| Predicted transcriptional regulator [Clostridium kluyveri DSM 555] gi|219569381|dbj|BAH07365.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 228 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 41/220 (18%), Positives = 87/220 (39%), Gaps = 3/220 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 L++D + + L +G ++ + + + D++ I+ L Sbjct: 4 IFLVEDDKAIARNLVLLLRSEGFTVTHAPTRSDAFTALAGNKFDLALIDISL--PDGNGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + I+ +P+I ++ + + + G DD + KP RE++AR+ R+ Sbjct: 62 TVCTEIKEMQDLPVIFLTASGDEASVVTGLNMGADDYITKPFRPRELMARIRTALRKSGR 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 S E + V + G L E R+L + N V ++++ ++ Sbjct: 122 SPRAFEICGVHVDMASGVVKKNGSEVFLSALEYRLLLVFINNPKSIVTRSRLLDELWDAA 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 E V +N + +I +LR+K+ N + + R GY + Sbjct: 182 GEFVNDNTLTVYIKRLREKIENNPASPQIILTVRGTGYRL 221 >gi|82751281|ref|YP_417022.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus RF122] gi|258424109|ref|ZP_05686991.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus A9635] gi|282916953|ref|ZP_06324711.1| two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP [Staphylococcus aureus subsp. aureus D139] gi|283770757|ref|ZP_06343649.1| two-component system OmpR family alkaline phosphatase synthesis response regulator PhoP [Staphylococcus aureus subsp. aureus H19] gi|82656812|emb|CAI81241.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus RF122] gi|257845730|gb|EEV69762.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus A9635] gi|282319440|gb|EFB49792.1| two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP [Staphylococcus aureus subsp. aureus D139] gi|283460904|gb|EFC07994.1| two-component system OmpR family alkaline phosphatase synthesis response regulator PhoP [Staphylococcus aureus subsp. aureus H19] gi|298694963|gb|ADI98185.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus ED133] gi|302333358|gb|ADL23551.1| response regulator OmpR [Staphylococcus aureus subsp. aureus JKD6159] gi|323440763|gb|EGA98472.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus O11] gi|323442918|gb|EGB00541.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus O46] Length = 234 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 40/227 (17%), Positives = 97/227 (42%), Gaps = 11/227 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + G + + + + D+ ++ L + ++ Sbjct: 6 LVVDDEHSIVTLLKYNLETAGYEVVVAFDGDEALEKVENEQPDLIILDVML--PKKDGID 63 Query: 63 LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115 + + +R + VP++ ++ + + G DD + KP RE+ + R + Sbjct: 64 VCKTVRTNKNLVPILMLTAKNDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRRSQF 123 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + ++ ++ G IR+ D + E+ L +E +L YL+ +G+ + + + + Sbjct: 124 VKEVEEIDDDITIGSIRIRPDYFEVYKHNELLELTPKEFELLLYLIERQGRVITREHMLN 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 ++ ++ A + +V+ HIS LR KL + + + R LGY ++ Sbjct: 184 TVW-NYEFAGDSRIVDVHISHLRDKLEDNPKKPQLIKTVRGLGYKLE 229 >gi|300853701|ref|YP_003778685.1| putative transcriptional regulator [Clostridium ljungdahlii DSM 13528] gi|300433816|gb|ADK13583.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM 13528] Length = 231 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 36/228 (15%), Positives = 78/228 (34%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + + + + + D+ ++ L Sbjct: 5 ILIIEDDLSIAELIRDYLELENFEVVICTDGIEGLNNFKENKFDLLILDIML--PQIDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + I+ +P++ +S + G DD + KP E++ARV + + + Sbjct: 63 SILHSIQEEKDIPVLLVSAKKEEIDKIKGLTLGADDYITKPFSPSELVARVKSHIKNYEK 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPR--------RERRILEYLMANRGKRVAKTQI 173 + P Q +E IL +L N + +K + Sbjct: 123 IKGKFVKPPKNNIIIRGLEINQDCRQVFVNGREVNLAQKEFEILSFLAQNPNRVFSKEDL 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 F I+GL D + + V HI ++R+K+ + +++ GY + Sbjct: 183 FEKIWGL-DAIGDTSTVTVHIGRIREKIESSPSNPQYIETVWGAGYRL 229 >gi|228990093|ref|ZP_04150065.1| Two component transcriptional regulator, winged helix [Bacillus pseudomycoides DSM 12442] gi|228769621|gb|EEM18212.1| Two component transcriptional regulator, winged helix [Bacillus pseudomycoides DSM 12442] Length = 232 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 53/229 (23%), Positives = 86/229 (37%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD A V D +G + + + S D+ ++ Sbjct: 6 ILIADDEAEVADLIAIHLEKEGYHVIKVADGKEAIRVIHSQPIDLVILDIM--MPKMDGY 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IRA +P+I +S S + G DD + KP E++ARV A RR + Sbjct: 64 EVTRQIRAQYHMPIIFLSAKTSDFDKVTGLVIGADDYMTKPFTPIELVARVNAQLRRFLM 123 Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 N ++ + R V E L +E IL L ++ K + I Sbjct: 124 LNQPKAEDNKSVLEIGGVVIYPEQRTVSVYEEQIELTPKEFDILYLLASHPKKVYSVENI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221 F ++ N V HI LRKKL +K + + +GY+ + Sbjct: 184 FQQVWAEDYYEG-RNTVMVHIRTLRKKLGEDKRKNKLIKTVWGVGYTFN 231 >gi|118595246|ref|ZP_01552593.1| phosphate regulon transcriptional regulatory protein phoB [Methylophilales bacterium HTCC2181] gi|118441024|gb|EAV47651.1| phosphate regulon transcriptional regulatory protein phoB [Methylophilales bacterium HTCC2181] Length = 231 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 46/226 (20%), Positives = 94/226 (41%), Gaps = 8/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G + S EF E + D+ ++ L G + Sbjct: 5 ILIVEDEESILELIAINLHQAGFNPIRSLSAEFAEKIIQKNLPDLIILDWML--PGMDGV 62 Query: 62 ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 E + IR S ++P+I ++ L + G DD + KP +E++AR+ AI RR Sbjct: 63 EFAKRIRGSSTTRKIPIIMLTAKSEEDNKLKGLNIGADDYMTKPFSPKELIARIKAILRR 122 Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 N + + ++ + E ++L + M+N ++ QI Sbjct: 123 NAPELVNEPINMNGLELDPIKYVLTNNDKIISIGPTEFKLLNFFMSNPNIAFSRNQILDK 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 ++G +++ V+ HI +LR L++ + + R LGY ++ Sbjct: 183 VWGNK-SDIDDRTVDVHIKRLRDTLKHTGQHSLIKTVRGLGYRLEK 227 >gi|49478884|ref|YP_039110.1| response regulator protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49330440|gb|AAT61086.1| response regulator protein [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 234 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 40/231 (17%), Positives = 88/231 (38%), Gaps = 12/231 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ ++G + + E L + ++ + Sbjct: 6 IMVVDDEKEIRELIAIYLKNEGYRVLQAENGEEGLELLKKNEVHLIVLDIM--MPKIDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH--------REILARVA 113 + +R +++P+I +S + +G DD V KP + ++ + Sbjct: 64 HMCMKVREIAEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMK 123 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + N E G +++ + + L RE ILE L N+G ++ QI Sbjct: 124 MNGGISAQNENEVEIGDMKINVTTHKVTIADQEVKLTPREFAILELLARNQGMVMSAEQI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223 + ++ + +N V HI K+R+K+ V + +GY I+ + Sbjct: 184 YERVW-KEEAFQSDNTVMVHIRKIREKIEENPRKPRYVKTVWGVGYKIEKD 233 >gi|33239608|ref|NP_874550.1| two-component response regulator [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33237133|gb|AAP99202.1| Two-component response regulator [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 247 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 44/229 (19%), Positives = 92/229 (40%), Gaps = 11/229 (4%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + ++ DD A ++ G + + + D+ ++ Sbjct: 10 IILVADDEASIRRILETRLSMIGYQVVTACNGNEALQQFHNCEPDLVVLDVM--MPKLDG 67 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + + +R S VP++ ++ + + + G DD V KP +E+ AR+ + RR++ Sbjct: 68 YGVIQELRKESDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRVE 127 Query: 121 VSNN-------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + R+ ++ R E L E +LE L++ G+ ++ +I Sbjct: 128 KEQIAGLPNSGVIQVAAFRIDTNRRKVYRGDERIRLTGMEFSLLELLVSRSGEPFSRGEI 187 Query: 174 FSAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 ++G + V+ VV+ HIS+LR KL + + + + R GY Sbjct: 188 LKEVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGYLF 236 >gi|310830024|ref|YP_003962381.1| two-component system protein response regulator [Eubacterium limosum KIST612] gi|308741758|gb|ADO39418.1| two-component system protein response regulator [Eubacterium limosum KIST612] Length = 239 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 55/228 (24%), Positives = 95/228 (41%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +L+DD + +G ++ + + DV ++ L Sbjct: 9 ILLVDDEPDITSLVETALRKEGFRCVDMAFTGKEALAACKENAPDVVILDIML--PDMDG 66 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ R IR S P++ +S + SG DD + KP +E++ RV A RRL+ Sbjct: 67 IEVCRAIREFSYCPVLFLSARNDDVDKILGLSSGGDDYITKPFSPKELVFRVKAQLRRLE 126 Query: 121 VSN-------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + R G + + DG G L RE IL YL N GK ++K ++ Sbjct: 127 YNKTAEAAAGRRIRVGGLEIDVDGSRVYQDGRELGLTAREFGILLYLAENAGKIISKDRL 186 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + ++G AV +N + HI LR+K+ + + + + LGY + Sbjct: 187 YEQVWGEL-SAVCDNTIMVHIRHLREKIEKDPSRPALILTVKGLGYRM 233 >gi|299538456|ref|ZP_07051739.1| response regulator protein [Lysinibacillus fusiformis ZC1] gi|298726043|gb|EFI66635.1| response regulator protein [Lysinibacillus fusiformis ZC1] Length = 233 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 42/229 (18%), Positives = 93/229 (40%), Gaps = 11/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ ++G + E L + + ++ + Sbjct: 6 ILIVDDEKEIRNLISIYLKNEGFQVLEACDGEEGLQLVKKHKVHLIVLDLM--MPKVDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ +R +++P+I ++ + G DD V KP + E++AR+ + RR Sbjct: 64 KMCMKVREVAEMPIIMLTAKSQDMDKIGGLTIGADDYVTKPFNPLELIARIKSQLRRYLK 123 Query: 122 SNNRAETGPI-------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + R+ + + V E L RE ILE L++N G ++ QI+ Sbjct: 124 MSGLHSSNKEELEVGDLRINTATHEVFVNNERVKLTPREFAILELLVSNPGIVMSAEQIY 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 ++ + EN V HI K+R+++ + + +GY ++ Sbjct: 184 EKVW-KEEAFQSENTVMVHIRKIRERIETNSRNPQYIKTVWGVGYKVEK 231 >gi|224500461|ref|ZP_03668810.1| hypothetical protein LmonF1_12649 [Listeria monocytogenes Finland 1988] gi|254830991|ref|ZP_05235646.1| hypothetical protein Lmon1_06513 [Listeria monocytogenes 10403S] gi|284803023|ref|YP_003414888.1| hypothetical protein LM5578_2780 [Listeria monocytogenes 08-5578] gi|284996164|ref|YP_003417932.1| hypothetical protein LM5923_2729 [Listeria monocytogenes 08-5923] gi|284058585|gb|ADB69526.1| hypothetical protein LM5578_2780 [Listeria monocytogenes 08-5578] gi|284061631|gb|ADB72570.1| hypothetical protein LM5923_2729 [Listeria monocytogenes 08-5923] Length = 225 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 41/223 (18%), Positives = 91/223 (40%), Gaps = 5/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +G + + E + + + ++ I+ Sbjct: 4 ILVVDDDRHILKLVGHYLRAEGFRVLEASDGVEAEKIVETEQVHLAVIDVM--MPNMDGF 61 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119 EL + +RA + +P+I ++ +L F+ G DD V KP E++ R+ A + R Sbjct: 62 ELCQKMRASYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELIFRIRALLRRSN 121 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + S + G I + ++ + +P +E +L L + G+ + ++ I+ Sbjct: 122 QASEVKINIGNITIDQKSYGIKIGNQERMIPVKEFELLYQLASYPGRIFTREELIERIW- 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 D + V+ HI +LR + + + R +GY ++ Sbjct: 181 QRDYDGSDRTVDVHIKRLRDHFDEEKDGIRIVTVRGVGYKLEE 223 >gi|110803691|ref|YP_699201.1| DNA-binding response regulator [Clostridium perfringens SM101] gi|110684192|gb|ABG87562.1| DNA-binding response regulator [Clostridium perfringens SM101] Length = 223 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 45/222 (20%), Positives = 98/222 (44%), Gaps = 7/222 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D ++ F +G ++ + E + S D++ ++ L Sbjct: 6 LIVEDEIRIRFLVRDYFKKEGFNVLEASDGEEALRIFSENIVDLAILDIM--MPKLDGLA 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRLK 120 + R IR S P+I ++ + L ++ G DD + KP + +LA+ A Sbjct: 64 VCRNIREVSNTPIILLTAKSQEEDKLLGYELGADDYMTKPFSPKVLLAKSKALLRRTGTL 123 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 N + + + + ++ GE L +E +L YL +N G +++ +I ++G Sbjct: 124 NDKNILDFNGLTINKLSHEVKLNGEELLLSPKEYDLLIYLSSNEGIALSRDRILDNVWG- 182 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D + V+++I +LR+KL +K + + + R GY + Sbjct: 183 YDYFGDIRTVDTNIKRLREKLLDK--ANYIATVRGSGYKFEV 222 >gi|52140967|ref|YP_085862.1| response regulator [Bacillus cereus E33L] gi|51974436|gb|AAU15986.1| response regulator [Bacillus cereus E33L] Length = 230 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 43/228 (18%), Positives = 93/228 (40%), Gaps = 10/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D +++ +G + + E D+ ++ L Sbjct: 5 ILLVEDDFSIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIM--MPKLDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115 E+ RIIR S VP++ +S + G DD + KP E+ R + Sbjct: 63 EVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 Y + + + G + + E G++ L +E IL+ + N+ + K QI++ Sbjct: 123 YSATETTEKTIQIGDLTIDPINFTVEKNGKLLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 I+ + ++NV+ H+ +LR+K+ + + + + +GY ++ Sbjct: 183 LIWNE-EYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLEV 229 >gi|24216802|ref|NP_714283.1| response regulator [Leptospira interrogans serovar Lai str. 56601] gi|45659090|ref|YP_003176.1| response regulator [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|24198167|gb|AAN51301.1| response regulator [Leptospira interrogans serovar Lai str. 56601] gi|45602336|gb|AAS71813.1| response regulator [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 233 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 36/225 (16%), Positives = 80/225 (35%), Gaps = 10/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + ++G ++ + D+ ++ L G ++ Sbjct: 13 LVVDDEEDIAELIRFHLEENGYQVDTCQNGLEVLPKLEKNTPDLIILDLML--PGIGGMD 70 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV-----NKPIHHREILARVAAIYR 117 L + I+ +P+I ++ + + G DD V + + R Sbjct: 71 LCKKIKEKYSMPIIMVTAKSGETEAVLGLELGADDYVRKPFSTRELIARVRSVLRRIKDE 130 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 G I + + L E +IL M N G + ++ + Sbjct: 131 EEDEFEGNITIGNIFLNLKAHKAFINNSEVDLTLIEYKILNLFMTNPGVAFTRDKLLDRV 190 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +G D V + V+ +I +LR KL + + +++ R +GY + Sbjct: 191 WGK-DIYVTDRAVDVNIKRLRDKLGD--EKERLETIRGIGYRFNE 232 >gi|333010839|gb|EGK30265.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella flexneri K-272] gi|333021338|gb|EGK40591.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella flexneri K-227] Length = 229 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 40/224 (17%), Positives = 93/224 (41%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A +++ + +G + + D+ ++ L G + Sbjct: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWML--PGGSGI 62 Query: 62 ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 + + ++ S +P++ ++ + + ++G DD + KP +E++AR+ A+ RR Sbjct: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + E + + E + E ++L + M + + ++ Q+ + Sbjct: 123 ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNH 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I+G + VE+ V+ HI +LRK L V + R GY Sbjct: 183 IWGT-NVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225 >gi|319650237|ref|ZP_08004383.1| response regulator receiver [Bacillus sp. 2_A_57_CT2] gi|317398068|gb|EFV78760.1| response regulator receiver [Bacillus sp. 2_A_57_CT2] Length = 231 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 51/226 (22%), Positives = 94/226 (41%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ +D A + +G + L + R D+ ++ L G + Sbjct: 5 ILVAEDEAKIARLLEIELEFEGYQVTKAMDGYQAMELYRTGRWDLIILDIML--PGFSGI 62 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R IR Q P++ ++ S++ + D G +D + KP E+LAR+ A R Sbjct: 63 EILRRIRSKDKQTPILLLTAKSSVEDKVSGLDLGANDYITKPFQIEELLARIRAALRIKS 122 Query: 121 VSNNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 ++ R+ + L RE +L YLM N+ + + + QI Sbjct: 123 AGTEEPAVHDCLEVSDLKLNEKTREVSRGDKAIELTPREFDLLVYLMTNKRQVLNREQIL 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 A++G +D + NVV+ +I LRKK+ + + R +GY + Sbjct: 183 EAVWG-YDFLGDTNVVDVYIRYLRKKIDMPERPALIHTIRGVGYVL 227 >gi|320009468|gb|ADW04318.1| two component transcriptional regulator, winged helix family [Streptomyces flavogriseus ATCC 33331] Length = 243 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 48/228 (21%), Positives = 92/228 (40%), Gaps = 13/228 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD V++ +G E S D+ ++ L Sbjct: 12 LIVDDEPAVREALQRSLAFEGYGTEVAVDGYDALAKAESYAPDLIVLDI--QMPRMDGLT 69 Query: 63 LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 R IR+ S P++ ++ ++ + D+G DD + KP E+ AR+ A+ RR Sbjct: 70 AARRIRSTGSTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSSY 129 Query: 122 SNNRAETGPI---------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + P R+ + R+ L R E +LE +A+ + + + Q Sbjct: 130 AAAQGGDVPDDDVLSFADLRMDLNTREVTRGARRVELTRTEFTLLEMFLAHPRQVLTREQ 189 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I A++G FD N ++ ++ LR+K V + R +GY++ Sbjct: 190 ILKAVWG-FDFEPSSNSLDVYVMYLRRKTEAGGEPRLVHTVRGVGYAL 236 >gi|254292716|ref|YP_003058739.1| two component transcriptional regulator PhoB, winged helix family [Hirschia baltica ATCC 49814] gi|254041247|gb|ACT58042.1| two component transcriptional regulator PhoB, winged helix family [Hirschia baltica ATCC 49814] Length = 248 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 48/222 (21%), Positives = 99/222 (44%), Gaps = 4/222 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61 ++++D + +G + E + + D+ ++ L G +V Sbjct: 24 LIVEDEEALVQLLQYNLQSEGYEVGVAMDGEMALLMVEERQPDIVLLDWMLPKLSGIEVC 83 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 R +P+I ++ + D+G DD + KP E+ AR+ A+ RR++ Sbjct: 84 RRLRSRDTTGNLPIIMLTARTEEADRIRGLDTGADDYIVKPFSMTELKARIRAVMRRIRP 143 Query: 122 --SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + ++ G + V G+ L E R+L+YL+ + G+ ++ ++ A++G Sbjct: 144 GLTEDKVVVGDLEVDRTAHKVARAGQQVHLGPTEFRLLDYLIQHPGRVFSRERLLDAVWG 203 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D VE V+ H+ +LRK L+ + DP+ + R GY+++ Sbjct: 204 -SDIYVEARTVDVHVGRLRKALKMEGLVDPIRTVRSAGYALN 244 >gi|158339404|ref|YP_001520581.1| two component transcriptional regulator [Acaryochloris marina MBIC11017] gi|158309645|gb|ABW31262.1| two component transcriptional regulator, winged helix family [Acaryochloris marina MBIC11017] Length = 238 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 40/233 (17%), Positives = 92/233 (39%), Gaps = 16/233 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + +G E ++ + + + D+ ++ L G L Sbjct: 5 ILIVEDEKEIAQLVRNMLETEGFICETLSNGADALRVVTVLQPDLVILDLML--PGLDGL 62 Query: 62 ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA----- 113 E+ IR S ++ ++ + +G DD + KP RE++ARV Sbjct: 63 EVCTRIRQQSLAKDPYILMLTARAEELDRIIGLTTGADDYLTKPFSPRELIARVRALLRR 122 Query: 114 ----AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 L + + E+ L E ++L+ ++ G+ + Sbjct: 123 SLRGEQSDHLLYRTESFTVDVEHHIAQRHLSGQEAEMLDLTSLEFKLLQTFLSYPGRAWS 182 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 +TQ+ ++G D ++ VV++ +++LRKK+ N + + + +GY + Sbjct: 183 RTQLIDNLWGN-DFFGDDRVVDTQVARLRKKIEVNPTQPQFIKTIQGVGYKFE 234 >gi|313898822|ref|ZP_07832356.1| response regulator receiver domain protein [Clostridium sp. HGF2] gi|312956404|gb|EFR38038.1| response regulator receiver domain protein [Clostridium sp. HGF2] Length = 230 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 44/227 (19%), Positives = 88/227 (38%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + + +E E + ++ L E Sbjct: 4 ILIVEDDRAIAELERDYLEANDYEVEICEDGESGLKRALQEDFALILLDVML--PKEDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R +RA VP+I +S + G +D + KP + E++ARV + + Sbjct: 62 QVCRNLRASKNVPIILVSAKREDMDKIRGLGLGANDYIVKPFNPSELIARVKSQIANYER 121 Query: 122 SNNRAETGPI-------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 A+ + + + + GE LP +E +L +L N +K Q+F Sbjct: 122 LTQGAQKKENLLQIENLMIDLNSHEVFLDGESLVLPNKEFELLVFLAKNPNIVFSKDQLF 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 I+GL D E + V HI+++R+K+ +++ GY Sbjct: 182 EKIWGL-DAIGEISTVTVHINRIREKIEKDSANPKFIETVWGSGYRF 227 >gi|89896827|ref|YP_520314.1| hypothetical protein DSY4081 [Desulfitobacterium hafniense Y51] gi|89336275|dbj|BAE85870.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 234 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 38/228 (16%), Positives = 85/228 (37%), Gaps = 13/228 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L+DD + + + L ++ E D+ ++ L E Sbjct: 8 LLVDDEESIYRVVEQVLKREAYELLYADNGEGALESFQKESPDLVILDVMLPL--IDGYE 65 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARVA 113 + R IR S+VP++ +S + F+ G DD + KP E + Sbjct: 66 VCRTIRETSKVPILMLSAKGEIIDKSVGFNLGADDYLVKPFSPVELGLRVKALLRRSFDK 125 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + G + + + + V+G+ L +E +L ++ + + + Q+ Sbjct: 126 EQSAPKARKTTKISKGELEINCESHEVFVRGKPVYLTPKEFELLTFMAEHPDQVFTREQL 185 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 F+ ++G + + + + I KLR+K+ + + + +GY Sbjct: 186 FAHMWG-DEYVNDTSTITVFIRKLREKIERDPAKPQYIQTVWGIGYKF 232 >gi|294631359|ref|ZP_06709919.1| transcriptional regulatory protein CseB [Streptomyces sp. e14] gi|292834692|gb|EFF93041.1| transcriptional regulatory protein CseB [Streptomyces sp. e14] Length = 245 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 46/227 (20%), Positives = 93/227 (40%), Gaps = 15/227 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + D +G ++ + + D+ ++ L G LE Sbjct: 22 LVVEDDQTILDAIATRLRAEGFLVQTAGDGPAAVDTAEAWQPDLLILDIML--PGFDGLE 79 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R ++A VP++ ++ L G DD + KP RE+ ARV + RR++ + Sbjct: 80 VCRRVQAQRPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRMERA 139 Query: 123 NNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 A T + R V+ E L E +L L +++ Q+ Sbjct: 140 ALAAATPRSGILRLGELEIDHAQRRVRVRSEDVHLTPTEFDLLVCLANTPRAVLSREQLL 199 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + ++ D + V+SHI LR+K+ G + + + +GY+++ Sbjct: 200 AEVWDWADASG-TRTVDSHIKALRRKI----GAERIRTVHGVGYALE 241 >gi|162419398|ref|YP_001607632.1| phosphate regulon transcriptional regulatory protein [Yersinia pestis Angola] gi|162352213|gb|ABX86161.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia pestis Angola] Length = 230 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 38/224 (16%), Positives = 91/224 (40%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A +++ + +G + S D+ ++ L G + Sbjct: 6 ILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVARLSEPFPDLVLLDWML--PGGSGI 63 Query: 62 ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 + + ++ +P++ ++ + + + G DD + KP +E++AR+ A+ RR Sbjct: 64 QFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRR 123 Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + E + + + + E ++L + M + + ++ Q+ + Sbjct: 124 ISPMAVEEVIEMQGLSLDPSSHRVMANDQALDMGPTEFKLLHFFMTHPERVYSREQLLNY 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + VE+ V+ HI +LRK L V + R GY Sbjct: 184 VWGT-NVYVEDRTVDVHIRRLRKALETDGHDKMVQTVRGTGYRF 226 >gi|160878177|ref|YP_001557145.1| two component transcriptional regulator [Clostridium phytofermentans ISDg] gi|160426843|gb|ABX40406.1| two component transcriptional regulator, winged helix family [Clostridium phytofermentans ISDg] Length = 228 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 51/224 (22%), Positives = 98/224 (43%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G +++ N + D+ ++ L G + Sbjct: 4 ILIVEDEVKIARFVELELKYEGYTVDIANDGRSGLEKALKSDIDLVLLDVML--PGLSGI 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR SQVP+I ++ + + D G DD + KP E+LAR+ R Sbjct: 62 EVCRRIRMESQVPIIMLTAKDDVTDKVAGLDMGADDYMTKPFAIEELLARIRVALSRHSK 121 Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 S+ A+ + E L ++E +LEYLM N+ + + Q+ + Sbjct: 122 SSAEAKQDVLTHGELKLNLTSHSANYGEEDLTLTKKEYELLEYLMRNKNIALTREQLLNN 181 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ ++ + NVV+ +I LR+K+ +K G + + R +GY I Sbjct: 182 VWD-YEYFGDTNVVDVYIRYLRQKIDDKYGVHLISTVRGVGYII 224 >gi|24379907|ref|NP_721862.1| putative response regulator CovR; VicR-like protein [Streptococcus mutans UA159] gi|290580113|ref|YP_003484505.1| putative response regulator [Streptococcus mutans NN2025] gi|14600271|gb|AAK71319.1|AF393849_1 responder protein CovR [Streptococcus mutans] gi|24377886|gb|AAN59168.1|AE014984_3 putative response regulator CovR; VicR-like protein [Streptococcus mutans UA159] gi|254997012|dbj|BAH87613.1| putative response regulator [Streptococcus mutans NN2025] Length = 235 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 48/231 (20%), Positives = 95/231 (41%), Gaps = 15/231 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G D+ ++ L L Sbjct: 4 ILIVDDEKPISDIIKFNLAKEGYDTITAFDGREALSKYEEENPDLIILDLML--PELDGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + +R +S VP+I +S S + + G DD V KP +RE+LARV A RR + Sbjct: 62 EVAKEVRKNSHVPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTEN 121 Query: 122 SN-----------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 G +++ D + +G L RE +L +L + G+ + + Sbjct: 122 IESAVAEENASGIPEIIIGDLQILPDAFVAKKRGTEVELTHREFELLHHLATHTGQVMTR 181 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + ++G +D + V+ + +LR+K+ + + + ++R +GY + Sbjct: 182 EHLLETVWG-YDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYM 231 >gi|30023068|ref|NP_834699.1| two-component response regulator VanRB [Bacillus cereus ATCC 14579] gi|30265077|ref|NP_847454.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|42784219|ref|NP_981466.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|47530583|ref|YP_021932.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49480366|ref|YP_039053.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52140496|ref|YP_086334.1| response regulator [Bacillus cereus E33L] gi|65317022|ref|ZP_00389981.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bacillus anthracis str. A2012] gi|118480119|ref|YP_897270.1| response regulator [Bacillus thuringiensis str. Al Hakam] gi|165870904|ref|ZP_02215556.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167634910|ref|ZP_02393228.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|167639953|ref|ZP_02398221.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170685986|ref|ZP_02877209.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|170707061|ref|ZP_02897518.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|177652353|ref|ZP_02934856.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190567210|ref|ZP_03020125.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|196033021|ref|ZP_03100434.1| DNA-binding response regulator [Bacillus cereus W] gi|196040431|ref|ZP_03107731.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|196047515|ref|ZP_03114725.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|206970050|ref|ZP_03231003.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|206978207|ref|ZP_03239087.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|218234504|ref|YP_002369838.1| DNA-binding response regulator [Bacillus cereus B4264] gi|218906232|ref|YP_002454066.1| DNA-binding response regulator [Bacillus cereus AH820] gi|222098485|ref|YP_002532543.1| response regulator [Bacillus cereus Q1] gi|225867018|ref|YP_002752396.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|227817807|ref|YP_002817816.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|229601053|ref|YP_002869274.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|254687368|ref|ZP_05151225.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254725381|ref|ZP_05187164.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254733723|ref|ZP_05191439.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254740561|ref|ZP_05198252.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254753177|ref|ZP_05205213.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|254761520|ref|ZP_05213541.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|270000517|ref|YP_003329022.1| DNA-binding response regulator [Bacillus cereus AH187] gi|296505470|ref|YP_003667170.1| two-component response regulator VanRB [Bacillus thuringiensis BMB171] gi|301056524|ref|YP_003794735.1| response regulator [Bacillus anthracis CI] gi|29898628|gb|AAP11900.1| Two-component response regulator vanRB [Bacillus cereus ATCC 14579] gi|30259754|gb|AAP28940.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|42740150|gb|AAS44074.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|47505731|gb|AAT34407.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49331922|gb|AAT62568.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51973965|gb|AAU15515.1| response regulator [Bacillus cereus E33L] gi|118419344|gb|ABK87763.1| response regulator [Bacillus thuringiensis str. Al Hakam] gi|164713413|gb|EDR18938.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167512034|gb|EDR87412.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|167529660|gb|EDR92409.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170128164|gb|EDS97034.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|170670450|gb|EDT21190.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|172082359|gb|EDT67425.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190561714|gb|EDV15684.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|195994450|gb|EDX58405.1| DNA-binding response regulator [Bacillus cereus W] gi|196021629|gb|EDX60326.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|196028563|gb|EDX67170.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|206734627|gb|EDZ51796.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|206743566|gb|EDZ54993.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217067588|gb|ACJ81838.1| DNA-binding response regulator [Bacillus cereus AH187] gi|218162461|gb|ACK62453.1| DNA-binding response regulator [Bacillus cereus B4264] gi|218536647|gb|ACK89045.1| DNA-binding response regulator [Bacillus cereus AH820] gi|221242544|gb|ACM15254.1| response regulator [Bacillus cereus Q1] gi|225786171|gb|ACO26388.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|227003747|gb|ACP13490.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|229265461|gb|ACQ47098.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|296326522|gb|ADH09450.1| two-component response regulator VanRB [Bacillus thuringiensis BMB171] gi|300378693|gb|ADK07597.1| response regulator [Bacillus cereus biovar anthracis str. CI] gi|324328974|gb|ADY24234.1| response regulator [Bacillus thuringiensis serovar finitimus YBT-020] gi|326942852|gb|AEA18748.1| two-component response regulator VanRB [Bacillus thuringiensis serovar chinensis CT-43] Length = 221 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 44/224 (19%), Positives = 99/224 (44%), Gaps = 11/224 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D +++ +++ + L D+ ++ L Sbjct: 4 ILVIEDNPDIQELIREFLMAQNFTVDVVGAGTEGILLFQKNSYDLVLLDVML--PDIDGY 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYR 117 + +I+R S VP+I ++ + ++ + F+ G+DD + KP H+ + RV Sbjct: 62 SICKIMRGQSDVPIIMLTGLHNEESEIKGFELGIDDYITKPFHYTVFIKRVEAVLRRAAT 121 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + + + + S V G L +E I+ L+ NRGK ++++ + + + Sbjct: 122 KEAEAATILQFHELMLNSTAYAAYVHGNQIELTTKEFEIIYTLLQNRGKVLSRSDLLNKV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +G ++ + V+++HI LRKKL G + + + +GY I+ Sbjct: 182 WG-YEHYGDVRVIDTHIKNLRKKL----GIPYIKTVKGIGYKIE 220 >gi|313157188|gb|EFR56618.1| response regulator receiver domain protein [Alistipes sp. HGB5] Length = 226 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 42/222 (18%), Positives = 91/222 (40%), Gaps = 7/222 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 +L+DD + + +G + + + R + ++ + G + Sbjct: 9 ILLVDDEPDILEFVKYTLVKEGYEVFTAQNGAEALKAAAQHRPHLILLDMMMPVMDGAQT 68 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119 R ++ +S + L F G DD + KPI + +++RV AI R Sbjct: 69 CRAIREDPQLRDTMVVFLSALGEEEQQLAGFGVGADDYLTKPIKMKLLVSRVQAILKRID 128 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + + G LPR+E +L+ L ++ GK ++ +I++ I+G Sbjct: 129 AGKAPAPAEEGVAMDRERYTVTRDGREISLPRKEFALLDLLYSSPGKLFSREEIYARIWG 188 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + V + ++ HI KLR+K+ + + + + + +GY + Sbjct: 189 -SEVVVGDRTIDVHIRKLRQKIGD----EKIVTVKGVGYKYE 225 >gi|229551249|ref|ZP_04439974.1| response regulator [Lactobacillus rhamnosus LMS2-1] gi|229315412|gb|EEN81385.1| response regulator [Lactobacillus rhamnosus LMS2-1] gi|259651071|dbj|BAI43233.1| two-component response regulator [Lactobacillus rhamnosus GG] Length = 238 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 52/230 (22%), Positives = 96/230 (41%), Gaps = 14/230 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + E S D+ ++ L L Sbjct: 6 ILVVDDEKPISDIVKFNLDKEGYDVVTAYDGEEALKKVESESPDLILLDLML--PKIDGL 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 E+ R IR P+I ++ S + + G DD V KP +RE++ARV A RR Sbjct: 64 EVARQIRKEHDTPIIMLTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRTSS 123 Query: 120 --------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 +N E G + + D +GE L RE +L YL + G+ + + Sbjct: 124 ANAAGSEEDEANRELEVGDLTIHPDAYTVSKRGENIELTHREFELLHYLARHLGQVMTRE 183 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + ++G +D + V+ + +LR+K+ + + + ++R +GY + Sbjct: 184 HLLQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPEWLVTRRGVGYYL 232 >gi|256826677|ref|YP_003150636.1| response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein [Cryptobacterium curtum DSM 15641] gi|256582820|gb|ACU93954.1| response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein [Cryptobacterium curtum DSM 15641] Length = 229 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 44/223 (19%), Positives = 86/223 (38%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D + + ++ E D+ ++ L G Sbjct: 8 ILVVDDEQTITDFVSYALQKENFESDVVHNGEDALEAAKKTDYDLFILDIML--PGMDGY 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 EL R +R+ + P++ +S + + + G DD ++KP RE++ARV Sbjct: 66 ELCRRLRSFTSAPVLFLSARDTELDKVVGLEIGGDDYLSKPFGLRELIARVRALLRRGSG 125 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + I + D L RE ++ LM + G V++ + + Sbjct: 126 QMETGHAITASGITLDEDAHTATGDSGPIDLTPREFELMAALMKHAGNVVSREDLLRDAW 185 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 G ++ E V++HI +LR K+ V++ R GY Sbjct: 186 G-WEYLTETKTVDTHIKRLRDKIAAAGYDPSVVETVRGYGYRF 227 >gi|221636014|ref|YP_002523890.1| response regulator [Thermomicrobium roseum DSM 5159] gi|221157462|gb|ACM06580.1| response regulator [Thermomicrobium roseum DSM 5159] Length = 225 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 44/221 (19%), Positives = 90/221 (40%), Gaps = 6/221 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + +G ++ S + L + R D+ ++ L G L Sbjct: 5 LVVDDDTRLVEMLRRTLSYEGFTVSVAQSGDEALRLVAERRPDLIVLDWLL--PGMDGLA 62 Query: 63 LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119 + + +RA P++ ++ +++ + DSG DD + KP E+ R Sbjct: 63 VVQRLRAAGDGTPILMLTARDAVEDRVLGLDSGADDYLVKPFAPAELLARIRALLRRVEP 122 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + R+ F L RE +L Y M + + + + QI A++G Sbjct: 123 ASDEKPLVFADLVLDPVTRETRRGDRSFRLSPREFDLLSYFMRHPRRVLTRNQILLAVWG 182 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D ++V++ +I LR+KL + + R +GY + Sbjct: 183 -HDFDGYDSVLDVYIGYLRQKLEAGGEPRLIHTVRGVGYVL 222 >gi|116073933|ref|ZP_01471195.1| two-component response regulator [Synechococcus sp. RS9916] gi|116069238|gb|EAU74990.1| two-component response regulator [Synechococcus sp. RS9916] Length = 248 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 44/228 (19%), Positives = 89/228 (39%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A + G ++ + D+ ++ Sbjct: 11 ILVVDDEASSRRILETRLSMIGYNVITACDGNEALECFRNVEPDLVVLDVM--MPKLDGY 68 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + +R S VP++ ++ + + + G DD V KP +E+ AR+ + RR+ Sbjct: 69 GVCQELRKESDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRRVDK 128 Query: 122 SNNRAETGPI-------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 R+ ++ R E L E +LE L++ G+ ++ +I Sbjct: 129 EQVAGIPNSGVIQVSDLRIDTNKRQVFRGDERIRLTGMEFSLLELLVSRSGEPFSRGEIL 188 Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 ++G + V+ VV+ HIS+LR KL + + + + R GY Sbjct: 189 KEVWGYTPERHVDTRVVDVHISRLRSKLEDDPANPELILTARGTGYLF 236 >gi|262200820|ref|YP_003272028.1| response regulator receiver [Gordonia bronchialis DSM 43247] gi|262084167|gb|ACY20135.1| response regulator receiver [Gordonia bronchialis DSM 43247] Length = 241 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 50/225 (22%), Positives = 92/225 (40%), Gaps = 10/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ G +E S + + D ++ G Sbjct: 16 ILVVDDEENIRQLLSVSLKFQGYEVETAESGPAAIDRCRTFKPDALILDVM--MPGMDGF 73 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAI 115 L R +RA P + +S S++ ++ G DD V KP E++AR + Sbjct: 74 GLLRRLRADGIEAPALFLSARDSVEDKINGLTIGGDDYVTKPFSLEEVVARLQVLLRRSG 133 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + +R I + + + G + L E +L Y M N G ++K +I Sbjct: 134 FDATEKQASRITFADIELDDETHEVFKAGNLVSLSPTEFTLLRYFMVNAGTVLSKPRILD 193 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +D E NVVES++S LR+KL + + + R +GY + Sbjct: 194 HVW-NYDFGGEVNVVESYVSYLRRKL-DTGDKRLIHTLRGVGYVM 236 >gi|220906521|ref|YP_002481832.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 7425] gi|219863132|gb|ACL43471.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7425] Length = 235 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 37/234 (15%), Positives = 83/234 (35%), Gaps = 17/234 (7%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G + + D+ ++ L G L Sbjct: 3 ILIVEDDREIAQLIQTCLSKEGFTCHLRFDGLNAITAYQELQPDLIILDWML--PGLDGL 60 Query: 62 ELPRIIRAH----SQVPLI-GISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------I 108 EL IR S+ P I ++ + +G DD + KP RE + Sbjct: 61 ELCARIRQKASGGSKDPFILMLTAKGEELDRIIGLSTGADDYLTKPFSPRELVARVRALL 120 Query: 109 LARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 + + P + + + + L E +L ++ G+ Sbjct: 121 RRSLRQGGQTRIYQTASFTIDPDQRCARRHYADTPEQTLDLTALEFELLSTFVSYPGRVW 180 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 ++Q+ ++G D ++ VV++H+++LRKK+ + + + +GY + Sbjct: 181 NRSQLIDKLWG-SDFFGDDRVVDTHVARLRKKIEPDSSNPTFIKTVIGVGYKFE 233 >gi|169343589|ref|ZP_02864588.1| DNA-binding response regulator [Clostridium perfringens C str. JGS1495] gi|169298149|gb|EDS80239.1| DNA-binding response regulator [Clostridium perfringens C str. JGS1495] Length = 269 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 45/222 (20%), Positives = 98/222 (44%), Gaps = 7/222 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D ++ F +G ++ + E + S D++ ++ L Sbjct: 52 LIVEDEIRIRFLVRDYFKKEGFNVLEASDGEEALRIFSENIVDLAILDIM--MPKLDGLA 109 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRLK 120 + R IR S P+I ++ + L ++ G DD + KP + +LA+ A Sbjct: 110 VCRNIREVSNTPIILLTAKSQEEDKLLGYELGADDYMTKPFSPKVLLAKAKALLRRTGTL 169 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 N + + + + ++ GE L +E +L YL +N G +++ +I ++G Sbjct: 170 NDKNILDFNGLTINKLSHEVKLNGEELLLSPKEYDLLIYLSSNEGIALSRDRILDNVWG- 228 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D + V+++I +LR+KL +K + + + R GY + Sbjct: 229 YDYFGDIRTVDTNIKRLREKLLDK--ANYIATVRGSGYKFEV 268 >gi|163790938|ref|ZP_02185361.1| DNA-binding response regulator [Carnobacterium sp. AT7] gi|159873780|gb|EDP67861.1| DNA-binding response regulator [Carnobacterium sp. AT7] Length = 235 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 46/229 (20%), Positives = 91/229 (39%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + E D+ ++ L + L Sbjct: 4 ILVVDDEKPISDIVKFNLTKEGYEVFTAYDGEEALEKVEEVLPDLIILDLML--PKKDGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R + +P+I ++ S + + G DD V KP +RE+ ARV A RR Sbjct: 62 EVCREVRKNHDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELAARVKANLRRHDN 121 Query: 122 SNNRAETGPIRVF---------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + D +G L RE +L YL + G+ + + Sbjct: 122 AKTQVVEEVETNDIEVGALTVHPDAYIVSKRGATIELTHREFELLHYLAKHLGQVMTREH 181 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + ++G +D + V+ + +LR+K+ + + ++R +GY + Sbjct: 182 LLQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPTWLVTRRGVGYYL 229 >gi|95928481|ref|ZP_01311228.1| two component transcriptional regulator, winged helix family [Desulfuromonas acetoxidans DSM 684] gi|95135271|gb|EAT16923.1| two component transcriptional regulator, winged helix family [Desulfuromonas acetoxidans DSM 684] Length = 223 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 43/221 (19%), Positives = 94/221 (42%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D V ++ +++ + E ++ S D+ ++ L + L Sbjct: 3 ILVVEDEKKVASFIKRGLEEENFTVDIAANGEEGLYMAESNHYDLILMDIML--PKKDGL 60 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + + +R+ P++ ++ S++ + DSG DD + KP E+LARV A+ RR Sbjct: 61 TVIKELRSKEVTTPVLCLTAKDSVEDIVAGLDSGSDDYLTKPFAFAELLARVKALVRRGA 120 Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 R+ + L +E +LEY M N + + +T I ++ Sbjct: 121 KDRGAEIYFADLRLDPVTHKVWRADKEIDLTAKEYGLLEYFMRNPNQVLTRTMIAEHVWD 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + N+++ +++ LRKK+ + + R +GY + Sbjct: 181 -YTFDSFTNIIDVYVNYLRKKIDKDYSKKLIHTIRGVGYVL 220 >gi|99081098|ref|YP_613252.1| two component transcriptional regulator [Ruegeria sp. TM1040] gi|99037378|gb|ABF63990.1| two component transcriptional regulator, winged helix family [Ruegeria sp. TM1040] Length = 229 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 47/221 (21%), Positives = 89/221 (40%), Gaps = 4/221 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61 ++++D ++ DG + + E L D+ ++ + G ++ Sbjct: 9 LVVEDELAQREVLAYNLEADGFRVIKAENGEEALLLVEEDMPDIIVLDWMMPNLTGIEIC 68 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + +P+I +S + ++G DD V KP E++ARV RR++ Sbjct: 69 RRLKTRTDTRSIPIIMLSARSEEVDKVRGLETGADDYVVKPYSVIELMARVRTQLRRVRP 128 Query: 122 SNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + I + ++ L E R+L M G+ ++ Q+ ++G Sbjct: 129 ATVGMRLEFDDIILDAETHKVSRSEHPLKLGPTEFRLLSTFMEKPGRVWSREQLLDRVWG 188 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D V+ V+ HI +LRK L G DPV + R GY++ Sbjct: 189 R-DIYVDTRTVDVHIGRLRKALTQHGGDDPVRTVRGAGYAL 228 >gi|256376067|ref|YP_003099727.1| two component transcriptional regulator, winged helix family [Actinosynnema mirum DSM 43827] gi|255920370|gb|ACU35881.1| two component transcriptional regulator, winged helix family [Actinosynnema mirum DSM 43827] Length = 241 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 56/221 (25%), Positives = 97/221 (43%), Gaps = 5/221 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L++D ++ GD+G + S E L DV ++ L G LE Sbjct: 21 LLVEDDEHIRQALGLALGDEGFGVTDAVSGEEALRLLDRRVFDVVLLDLSL--PGVDGLE 78 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R++RA +P+I ++ + ++G DD V KP+ E+ AR+ A+ RR Sbjct: 79 VCRVLRARGDLPIIIVTARADTADVIAGLEAGADDYVTKPLVAGELAARIRALLRRRGGG 138 Query: 123 NNRAETGPIRVFSDGRDPE-VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 A G G+ L R E R+L L + G+ V + Q+ ++G + Sbjct: 139 GEEALRFGDLEVRAGEGVVLRAGDEVHLTRTEFRLLVELASAAGRVVTREQLLQRVWG-Y 197 Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 D + +++ HI +LR+K+ N V + R GY +D Sbjct: 198 DYFGDTRLLDVHIRRLRRKVEQNPDDPALVLTVRGAGYRLD 238 >gi|257060465|ref|YP_003138353.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8802] gi|256590631|gb|ACV01518.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8802] Length = 250 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 46/232 (19%), Positives = 94/232 (40%), Gaps = 16/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQS-------SAREDVSAIEAFLI 54 ++++D +++D + G + + L + D+ ++ L Sbjct: 21 ILVVEDEDVIRDMITIALEEQGYEVITASDGRTALNLLQDVATLGTESGFDLVVLDLML- 79 Query: 55 GKGEKVLELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113 L++ R++ ++ VP++ +S S + + G DD + KP RE++AR Sbjct: 80 -PQVNGLDICRLLRYNNNIVPILILSAKASETDRVLGLEVGADDYLTKPFSMRELVARCR 138 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQG----EVFPLPRRERRILEYLMANRGKRVA 169 A+ RR +N + E + E L +E R+LE M+ + + Sbjct: 139 ALIRRQDFNNVSSAPVRKFKDISLYPEECRVVVRGEEINLSPKEYRLLELFMSYPRRVWS 198 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + Q+ ++G D + V+ HI LR+KL + + + + R GY Sbjct: 199 REQLIDQVWGA-DFLGDTKTVDVHIRWLREKLETDPSQPEYLITVRGFGYRF 249 >gi|134097367|ref|YP_001103028.1| putative two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|291009075|ref|ZP_06567048.1| putative two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|133909990|emb|CAM00102.1| putative two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 231 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 48/227 (21%), Positives = 97/227 (42%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V++ +G +E + ++ R D ++ L Sbjct: 3 ILVVDDDRAVRESLRRSLQFNGYQVELAADGQQALDWLAAQRPDAMVLDVM--MPRVDGL 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +R+ P++ ++ ++ + D+G DD + KP E+LAR+ A+ RR Sbjct: 61 EVARRLRSTGDDLPILVLTARDAVSDRVAGLDAGADDYLPKPFALEELLARLRALLRRAA 120 Query: 121 VSNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 S+ E P + R+ L R E +LE LMA+ + + ++++ Sbjct: 121 PSDVDREDRPEPLRFSDLELDPGTREVRRGERPISLTRTEFALLELLMAHPKQVLTRSRL 180 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G +D N +E +I LR+K + + + R +GY + Sbjct: 181 LEDVWG-YDFPTSGNALEVYIGYLRRKTEAEGEPRLIHTVRGVGYVL 226 >gi|108798318|ref|YP_638515.1| two component transcriptional regulator [Mycobacterium sp. MCS] gi|119867415|ref|YP_937367.1| two component transcriptional regulator [Mycobacterium sp. KMS] gi|126433983|ref|YP_001069674.1| two component transcriptional regulator [Mycobacterium sp. JLS] gi|108768737|gb|ABG07459.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. MCS] gi|119693504|gb|ABL90577.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. KMS] gi|126233783|gb|ABN97183.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. JLS] Length = 228 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 45/220 (20%), Positives = 87/220 (39%), Gaps = 5/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + +G R D+ ++ L G + Sbjct: 8 ILVVDDDPSLAEMLTIVLRGEGFDTAVVGDGTQALSAVRELRPDLVLLDLML--PGMNGI 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R++RA S VP++ ++ + +SG DD V KP +E++ARV A RR + Sbjct: 66 DVCRVLRADSGVPIVMLTAKTDTVDVVLGLESGADDYVMKPFKPKELVARVRARLRRNED 125 Query: 122 SNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 G + + QGE L E +L L + + + ++G Sbjct: 126 EPAELLSIGDVEIDVPAHKVTRQGEQISLTPLEFDLLVALARKPRQVFTRDVLLEQVWG- 184 Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219 + + +V H+ +LR K+ + V + R +GY Sbjct: 185 YRHPADTRLVNVHVQRLRAKVEKDPENPQVVLTVRGVGYK 224 >gi|87200295|ref|YP_497552.1| two component transcriptional regulator [Novosphingobium aromaticivorans DSM 12444] gi|87135976|gb|ABD26718.1| two component transcriptional regulator, winged helix family [Novosphingobium aromaticivorans DSM 12444] Length = 229 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 48/223 (21%), Positives = 99/223 (44%), Gaps = 4/223 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +L++D + + F +G + + + L + D+ ++ + G G +V Sbjct: 6 LLLVEDDTALAELVEYRFRGEGYDVRTTDDGDEALLLAAEDTPDLVLLDWMIGGTSGIEV 65 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 R + + VP+I ++ + + G DD V KP RE++ARV A+ RR++ Sbjct: 66 CRRLRRNKETAHVPIIMLTARSDEDDRIRGLEIGADDYVTKPFSPRELIARVGAVLRRVR 125 Query: 121 VSNNRAETGPIR--VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + +G+ + E R+L++ M + G+ ++ Q+ A++ Sbjct: 126 PALAGETITVGDLSLDPTAHRVSRRGQPMKVGPTEFRLLKHFMEHPGRVFSRGQLLDAVW 185 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 G +E V+ HI +LR+ + DPV + R GY+++ Sbjct: 186 GSG-SDIELRTVDVHIRRLRQAIAVPGAADPVRTVRSAGYALE 227 >gi|187932476|ref|YP_001887260.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B] gi|187720629|gb|ACD21850.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B] Length = 236 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 39/233 (16%), Positives = 83/233 (35%), Gaps = 15/233 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++D +G + + E + D+ ++ + Sbjct: 7 ILIVDDEKEIRDLVEIYLKSEGYATVKACNGEEALNIIREQNIDLVILDVM--MPKLNGI 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----------REILA 110 + IR ++P+I +S + + G DD + KP + R Sbjct: 65 DTCLKIREEREMPIIMLSAKSEGIDKILGLNMGADDYITKPFNPLELVARVKSQLRRFYK 124 Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 K + E + + + + + + L E IL L NRGK + Sbjct: 125 FNTKHMEDEKEEESIIEIDELIINLETHEVILSNNLVKLTPTEFDILLLLSKNRGKVFSI 184 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDW 222 I+ +++ + +N V HI K+R+K+ + + + +GY I+ Sbjct: 185 ENIYESVWNQ-EFMSSDNTVMVHIRKIREKIESDPRTPKFIKTVWGVGYKIEK 236 >gi|156740994|ref|YP_001431123.1| two component transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156232322|gb|ABU57105.1| two component transcriptional regulator, winged helix family [Roseiflexus castenholzii DSM 13941] Length = 230 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 48/225 (21%), Positives = 91/225 (40%), Gaps = 8/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D ++ + +G S+ + D+ ++ L Sbjct: 6 ILLVEDDPILSETLRYNLEREGYSVINAVDGVAGLERARRDQPDMVILDVML--PRLDGF 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + RI+R S+VP++ ++ + + G DD V KP E+LARV AI RR + Sbjct: 64 SVCRILRQESEVPILILTARQDEIDRIAGLELGADDYVAKPFSLGELLARVRAIMRRSER 123 Query: 122 SNNRAETGPI----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 RV + R L ++E +L LM NR +++ + + Sbjct: 124 RIGMMREVLDAGSLRVDTGSRRAWRDNVELNLSQKEFDLLVCLMRNRSMALSRDMLLERV 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 +G +D + V+ HI LR+K+ + + + R +GY + Sbjct: 184 WG-YDFLGDSRTVDVHIRWLREKVEPDPSRPVYIHTVRGIGYRFE 227 >gi|221067401|ref|ZP_03543506.1| two component heavy metal response transcriptional regulator, winged helix family [Comamonas testosteroni KF-1] gi|220712424|gb|EED67792.1| two component heavy metal response transcriptional regulator, winged helix family [Comamonas testosteroni KF-1] Length = 224 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 50/221 (22%), Positives = 99/221 (44%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + G +E N ++ S+ D+ ++ L G Sbjct: 3 ILIIEDEIKSAEYLKKGLTSSGYQVEVSNDGVDGLFVAQSSEFDLLILDVML--PGIDGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 R R SQVP++ ++ S++ + + G DD + KP + E+LARV + RR + Sbjct: 61 SFIRRFRERSQVPVLFLTARDSVEDRVKGLELGADDYLIKPFSYAELLARVRTLLRRTPM 120 Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 V R G+ L +E +L+ L+ ++G+ ++++QI S ++ + Sbjct: 121 RQQDIFQLADLEVDMLKRRAIRGGQRIDLTNKEFALLQLLLQHKGEVMSRSQIASQVWDM 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + NVV+ I +LR K+ + + + R +GY I+ Sbjct: 181 -NFDSDTNVVDVAIRRLRAKIDDGFAVKLIQTVRGMGYRIE 220 >gi|311280718|ref|YP_003942949.1| two component transcriptional regulator PhoB, winged helix family [Enterobacter cloacae SCF1] gi|308749913|gb|ADO49665.1| two component transcriptional regulator PhoB, winged helix family [Enterobacter cloacae SCF1] Length = 229 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 38/222 (17%), Positives = 92/222 (41%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D A +++ + +G + + D+ ++ L G G + Sbjct: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVTQLNEPWPDLILLDWMLPGGSGIQF 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ + +P++ ++ + + ++G DD + KP +E++AR+ A+ RR+ Sbjct: 65 IKHLKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS 124 Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 E + + + E ++L + M + + ++ Q+ + ++ Sbjct: 125 PMAVEEVIEMQGLSLDPSSHRVMTGENPLDMGPTEFKLLHFFMTHPERVYSREQLLNHVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G + VE+ V+ HI +LRK L + V + R GY Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALEHSGHDRMVQTVRGTGYRF 225 >gi|307326291|ref|ZP_07605487.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] gi|306887954|gb|EFN18944.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] Length = 248 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 40/224 (17%), Positives = 83/224 (37%), Gaps = 11/224 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD V+ + +G + ++ D ++ L L Sbjct: 23 LVVDDDPEVRAALVDGLAVEGYEVRVAGDGLAALSAVAAGPPDAIVLD--LAMPVMDGLA 80 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARVAA 114 + R +R P++ ++ + + D+G DD + KP R +L R A Sbjct: 81 VCRRLRGLGDRTPVLVLTARDEISERVAGLDAGADDYLVKPFALDELLARLRALLRRAAP 140 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + + + V + R G R E +LE + + G+ + + I Sbjct: 141 VEALDENVSGVLSFADLTVDPESRTGMRGGRRMEFTRTEFALLEVFLRHPGQVLPRELIQ 200 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++G + A + N + +I LR+KL + V + +GY Sbjct: 201 ELVWGT-EFASDSNSLAVYIGYLRRKLEAEGAPRLVHTVHGIGY 243 >gi|229144519|ref|ZP_04272922.1| Two-component response regulator vanR [Bacillus cereus BDRD-ST24] gi|228638932|gb|EEK95359.1| Two-component response regulator vanR [Bacillus cereus BDRD-ST24] Length = 243 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 39/229 (17%), Positives = 82/229 (35%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +G + ++ E + ++ ++ ++ + Sbjct: 17 ILIVDDDKDIIQFINVNLKQEGFKVFSAHNGEEALEIINNNSIQLAILDIM--MPQMDGI 74 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARVA 113 EL R IR +P++ +S S + F +G DD + KP E Sbjct: 75 ELCRRIREKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 134 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 +V + + + R + GE L + E I + A R + +I Sbjct: 135 FNQNAPQVMEKKINIRGLEIDEVSRTVMLYGERINLTKTEYDIFHLMAAARNRVFTIEEI 194 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + +++ N V HI++LR K+ + + +GY I+ Sbjct: 195 YESVWNERAYE-SNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIE 242 >gi|116329429|ref|YP_799149.1| response regulator [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116329967|ref|YP_799685.1| response regulator [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116122173|gb|ABJ80216.1| Response regulator [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116123656|gb|ABJ74927.1| Response regulator [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 234 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 41/226 (18%), Positives = 86/226 (38%), Gaps = 11/226 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + ++G ++ + D+ ++ L G ++ Sbjct: 13 LVVDDEEDIAELIRFHLEENGYQVDTCQNGLEVLPKLEKNTPDLVILDLML--PGIGGMD 70 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILA------RVAAIY 116 L + I+ +P+I ++ + + G DD V KP RE++A R Sbjct: 71 LCKKIKEKYSMPIIMVTAKSGETEAVLGLELGADDYVRKPFSTRELIARVRSVLRRTKEG 130 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + G I + + L E +IL M N G + ++ Sbjct: 131 EEEEQFEGNITIGNIFLNLKAHKAFINNFEVDLTLIEYKILNLFMTNPGVAFTRDKLLDR 190 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 ++G D V + V+ +I +LR KL + + +++ R +GY + Sbjct: 191 VWGK-DIYVTDRAVDVNIKRLRDKLGD--EKERLETIRGIGYRFNE 233 >gi|332970747|gb|EGK09727.1| response regulator VanR [Desmospora sp. 8437] Length = 249 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 47/227 (20%), Positives = 94/227 (41%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D + + ++ + ++ L + Sbjct: 18 ILLIEDDPDISCLIAETLWSENYEVDVAENGLDGISYLKKKDYHAVILDLML--PDLDGI 75 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R IR VP+I ++ + +G DD + KP E+ AR+ A RR Sbjct: 76 DVLRHIRESRNVPVIILTAREEETDLIAGLSTGADDYMTKPFSIPELKARLQAHMRRYLY 135 Query: 122 SNNRAE-------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N + + G + + + + ++ EV L +E +ILE +M+ K +K+Q+F Sbjct: 136 LNAKPDQPEAILVHGELCLNRNSHELSIKSEVHKLTSKEFKILELMMSYPTKIFSKSQLF 195 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 +++G D +EN V HI +LR+K+ + + + +GY + Sbjct: 196 RSVWG-DDSMSDENTVMVHIRRLRRKIEPDPSKPRYLQTVWGIGYRL 241 >gi|331699682|ref|YP_004335921.1| winged helix family two component transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326954371|gb|AEA28068.1| two component transcriptional regulator, winged helix family [Pseudonocardia dioxanivorans CB1190] Length = 260 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 56/223 (25%), Positives = 95/223 (42%), Gaps = 8/223 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD A V+D G G +E + DV ++ L G LE Sbjct: 35 LVVDDDATVRDVVARYLGAAGHDVELALDGPGALRAARTTPPDVVVLDLML--PGLGGLE 92 Query: 63 LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R +RA + P+I ++ L + G DD V KP RE++ RV +I RR Sbjct: 93 VCRALRADGDRPPIIMLTALGEEDDRLLGLELGADDYVTKPFSPRELVLRVGSILRRTAA 152 Query: 122 SNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 E RV R + G+ L RE +L +L+A+ G+ + ++ S ++G Sbjct: 153 PATAPELVDGGLRVDPAARVASLDGQPLALTTREFDLLAFLLAHPGQAFTREELLSRVWG 212 Query: 180 LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 E + + V H+ +LR+K+ + + + GY D Sbjct: 213 W--EFGDRSTVTVHVRRLREKVEADPTAPRRIATIWGTGYRYD 253 >gi|313681083|ref|YP_004058822.1| two component transcriptional regulator, winged helix family [Oceanithermus profundus DSM 14977] gi|313153798|gb|ADR37649.1| two component transcriptional regulator, winged helix family [Oceanithermus profundus DSM 14977] Length = 235 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 49/219 (22%), Positives = 90/219 (41%), Gaps = 4/219 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + A G+ G ++ + ++ L Sbjct: 16 ILIIEDDPEIASLLQAELGEAGYRVDWAPGGMQGLVKLREDPPHLIVLDLGL--PDLDGS 73 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R + H VP+I ++ +++ + G DD + KP H E+LAR+ RR + Sbjct: 74 EIARRAKQHGDVPIIVLTATDAVERKVQLLLGGADDYLTKPFHPAELLARIQVQLRRGEG 133 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 R + R G L +E +LE L + G+ ++ +I I+G Sbjct: 134 GEVRRVGDLEIE-VETRRVRAGGREVALSPKEFALLELLSSRPGRVFSRDEIARHIWGKP 192 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 E NVV+ H++ LR KLR + + + R +GY++ Sbjct: 193 -LETESNVVDVHVANLRAKLREAGAYGYLRTVRGVGYAL 230 >gi|304406308|ref|ZP_07387965.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] gi|304344892|gb|EFM10729.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] Length = 228 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 48/226 (21%), Positives = 87/226 (38%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + + F G + E + E + D+ ++ L G L Sbjct: 4 ILIIEDEIPIAELERDYFELHGFTAELAHDGEEGTAKALAGGYDLIILDLNL--PGADGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115 E+ R IRA VP++ +S + F G DD V KP E+ Sbjct: 62 EVCRSIRAQLDVPILIVSARDEEIDKIRGFGLGADDFVTKPFSPNELIARAKAHLSRYER 121 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + + + R V G L RE +L ++ A+ + +KT++F Sbjct: 122 FANRTAEPEQIRIRELTIDKTARRVYVHGNEVVLTTREFDVLAFMAAHPNRVFSKTELFE 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++G FD A + V HI ++R+K+ +++ GY Sbjct: 182 RLWG-FDSAGDIATVAVHIRRVREKIEAVPSNPQFIETVWGAGYRF 226 >gi|116873949|ref|YP_850730.1| DNA-binding response regulator [Listeria welshimeri serovar 6b str. SLCC5334] gi|116742827|emb|CAK21951.1| DNA-binding response regulator [Listeria welshimeri serovar 6b str. SLCC5334] Length = 225 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 41/223 (18%), Positives = 91/223 (40%), Gaps = 5/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +G + + E + + + ++ I+ Sbjct: 4 ILVVDDDRHILKLVGHYLRAEGFHVLAASDGVEAEKIVENEQIHLAVIDVM--MPNMDGF 61 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119 EL + +RA + +P+I ++ +L F+ G DD V KP E++ R+ A + R Sbjct: 62 ELCQKMRASYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELVFRIRALLRRSN 121 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + S + G I + ++ + +P +E +L L + G+ + ++ I+ Sbjct: 122 QASEVKINIGKITIDQKSYGIKIGNQERMIPVKEFELLYQLASYPGRIFTREELIERIW- 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 D + V+ HI +LR + + + R +GY ++ Sbjct: 181 QRDYDGSDRTVDVHIKRLRDHFDEEKDGIRIVTVRGVGYKLEE 223 >gi|49483935|ref|YP_041159.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus MRSA252] gi|257425808|ref|ZP_05602232.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257428474|ref|ZP_05604872.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257431108|ref|ZP_05607485.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus 68-397] gi|257433791|ref|ZP_05610149.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus E1410] gi|257436707|ref|ZP_05612751.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus M876] gi|282904264|ref|ZP_06312152.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus aureus subsp. aureus C160] gi|282906089|ref|ZP_06313944.1| two-component system OmpR family alkaline phosphatase synthesis response regulator PhoP [Staphylococcus aureus subsp. aureus Btn1260] gi|282909004|ref|ZP_06316822.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WW2703/97] gi|282911320|ref|ZP_06319122.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WBG10049] gi|282914489|ref|ZP_06322275.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus aureus subsp. aureus M899] gi|282919458|ref|ZP_06327193.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Staphylococcus aureus subsp. aureus C427] gi|282924835|ref|ZP_06332501.1| two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP [Staphylococcus aureus subsp. aureus C101] gi|283958444|ref|ZP_06375895.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus aureus subsp. aureus A017934/97] gi|293503567|ref|ZP_06667414.1| two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP [Staphylococcus aureus subsp. aureus 58-424] gi|293510582|ref|ZP_06669287.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Staphylococcus aureus subsp. aureus M809] gi|293537124|ref|ZP_06671804.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus aureus subsp. aureus M1015] gi|295428264|ref|ZP_06820893.1| two-component system [Staphylococcus aureus subsp. aureus EMRSA16] gi|297590773|ref|ZP_06949411.1| response regulator [Staphylococcus aureus subsp. aureus MN8] gi|49242064|emb|CAG40763.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus MRSA252] gi|257271502|gb|EEV03648.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257275315|gb|EEV06802.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257278056|gb|EEV08704.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus 68-397] gi|257281884|gb|EEV12021.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus E1410] gi|257284058|gb|EEV14181.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus M876] gi|282313201|gb|EFB43597.1| two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP [Staphylococcus aureus subsp. aureus C101] gi|282317268|gb|EFB47642.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Staphylococcus aureus subsp. aureus C427] gi|282321670|gb|EFB51995.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus aureus subsp. aureus M899] gi|282325015|gb|EFB55325.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WBG10049] gi|282327268|gb|EFB57563.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331381|gb|EFB60895.1| two-component system OmpR family alkaline phosphatase synthesis response regulator PhoP [Staphylococcus aureus subsp. aureus Btn1260] gi|282595882|gb|EFC00846.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus aureus subsp. aureus C160] gi|283470960|emb|CAQ50171.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Staphylococcus aureus subsp. aureus ST398] gi|283790593|gb|EFC29410.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus aureus subsp. aureus A017934/97] gi|290919969|gb|EFD97037.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus aureus subsp. aureus M1015] gi|291095233|gb|EFE25498.1| two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP [Staphylococcus aureus subsp. aureus 58-424] gi|291466473|gb|EFF08994.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Staphylococcus aureus subsp. aureus M809] gi|295127664|gb|EFG57301.1| two-component system [Staphylococcus aureus subsp. aureus EMRSA16] gi|297575659|gb|EFH94375.1| response regulator [Staphylococcus aureus subsp. aureus MN8] gi|312437849|gb|ADQ76920.1| response regulator [Staphylococcus aureus subsp. aureus TCH60] gi|315195597|gb|EFU25984.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus aureus subsp. aureus CGS00] Length = 233 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 40/227 (17%), Positives = 97/227 (42%), Gaps = 11/227 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + G + + + + D+ ++ L + ++ Sbjct: 6 LVVDDEHSIVTLLKYNLETAGYEVVVAFDGDEALEKVENEQPDLIILDVML--PKKDGID 63 Query: 63 LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115 + + +R + VP++ ++ + + G DD + KP RE+ + R + Sbjct: 64 VCKTVRTNKNLVPILMLTAKNDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRRSQF 123 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + ++ ++ G IR+ D + E+ L +E +L YL+ +G+ + + + + Sbjct: 124 VKEVEEIDDDITIGSIRIRPDYFEVYKHNELLELTPKEFELLLYLIERQGRVITREHMLN 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 ++ ++ A + +V+ HIS LR KL + + + R LGY ++ Sbjct: 184 TVW-NYEFAGDSRIVDVHISHLRDKLEDNPKKPQLIKTVRGLGYKLE 229 >gi|86138139|ref|ZP_01056714.1| two-component response regulator [Roseobacter sp. MED193] gi|85825166|gb|EAQ45366.1| two-component response regulator [Roseobacter sp. MED193] Length = 224 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 45/221 (20%), Positives = 88/221 (39%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L+DD ++D G + + S D ++ L Sbjct: 3 ILLVDDDPRLRDLVRIALERAGWQVVTAADGQEALLHASREDPDFIVLDIGL--PELDGF 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119 E+ R IR S+VP++ ++ + + G DD V KP RE+ R + Sbjct: 61 EVCRRIRQRSEVPILFLTARDDEVDCILGLELGADDYVTKPFSPRELVARIRTIMKRSQK 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++ G + + ++ G+ L RE+ IL L+ + + ++ ++ S I+G Sbjct: 121 AQASTSLTHGELSLDPRAHRCQINGQEIALTAREQGILALLLQDPAQIRSRAELISQIWG 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 V + ++SH+ LR KL G D +++ +G + Sbjct: 181 AG-SQVSDRTLDSHLRNLRAKLEQAGGNDLIETVHAVGIRL 220 >gi|296130171|ref|YP_003637421.1| two component transcriptional regulator, winged helix family [Cellulomonas flavigena DSM 20109] gi|296021986|gb|ADG75222.1| two component transcriptional regulator, winged helix family [Cellulomonas flavigena DSM 20109] Length = 227 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 45/219 (20%), Positives = 89/219 (40%), Gaps = 5/219 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + + +G + + + + D+ ++ L G+ E Sbjct: 6 LVVDDDTALAEMIGIVLRSEGFDPVFCEDGDEALGVFRATQPDLVLLDLML--PGKDGNE 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR S VP++ ++ + +SG DD ++KP +E++ARV A RR Sbjct: 64 VCRQIRGESGVPIVMLTAKSDTIDVVLGLESGADDYISKPFKPKELVARVRARLRRSDEP 123 Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 T + G E G L E +L L + + + ++G + Sbjct: 124 APEHLTIGDLTIDVPGHRVERAGRTISLTPLEFDLLVALARKPWQVFTREVLLEKVWG-Y 182 Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219 A + +V H+ +LR K+ + + V + R +GY Sbjct: 183 RHAADTRLVNVHVQRLRSKIETDPARPEIVVTVRGVGYK 221 >gi|157146995|ref|YP_001454314.1| transcriptional regulator PhoB [Citrobacter koseri ATCC BAA-895] gi|157084200|gb|ABV13878.1| hypothetical protein CKO_02772 [Citrobacter koseri ATCC BAA-895] Length = 229 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 39/222 (17%), Positives = 92/222 (41%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D A +++ + +G + + D+ ++ L G G + Sbjct: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGLQF 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ + +P++ ++ + + ++G DD V KP +E++AR+ A+ RR+ Sbjct: 65 IKHLKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYVTKPFSPKELVARIKAVMRRIS 124 Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 E + + + E ++L + M + + ++ Q+ + ++ Sbjct: 125 PMAVEEVIEMQGLSLDPTSHRVMTGENPLDMGPTEFKLLHFFMTHPERVYSREQLLNHVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G + VE+ V+ HI +LRK L + V + R GY Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALEHSGHDRMVQTVRGTGYRF 225 >gi|328883961|emb|CCA57200.1| two-component system response regulator [Streptomyces venezuelae ATCC 10712] Length = 242 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 49/229 (21%), Positives = 93/229 (40%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V++ +G + S D+ ++ L Sbjct: 11 ILIVDDEPAVREALRRSLAFEGYGTQDAVDGVDALARMESYAPDLVVLDV--QMPRMDGL 68 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 R IRA S VP++ ++ ++ + D+G DD + KP E+ AR+ A+ RR Sbjct: 69 TAARRIRASGSTVPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSS 128 Query: 121 VSN---------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + + +R+ R+ G L R E +LE +A+ + + + Sbjct: 129 YARATAGAPDTGDVLSFEDLRMDLATREVTRGGRTVELTRTEFTLLEMFLAHPRQVLTRE 188 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 QI A++G FD N ++ ++ LR+K V + R +GY++ Sbjct: 189 QILKAVWG-FDFEPSSNSLDVYVMYLRRKTEAGGEPRLVHTVRGVGYAL 236 >gi|319936032|ref|ZP_08010455.1| vanr protein [Coprobacillus sp. 29_1] gi|319808982|gb|EFW05489.1| vanr protein [Coprobacillus sp. 29_1] Length = 226 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 45/224 (20%), Positives = 82/224 (36%), Gaps = 8/224 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + D +DG + F + D++ ++ L LE Sbjct: 4 LVVDDEKEIADLVELYLKNDGFEVYKFYTGNEALQCVDVQDIDLAILDIML--PDISGLE 61 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-----ARVAAIYR 117 + + IR + P+I ++ + + G DD V KP E++ Sbjct: 62 ICQTIRENYNFPIIMLTAKETEIDKITGLTIGADDYVTKPFRPLELMARVKAQLRRYKTM 121 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 K N G + + D + + L E IL L ++GK V QIF + Sbjct: 122 TPKEEKNMVTIGALTIDQDNHQCILNNQTLSLTPTEFSILWLLCKHKGKVVTVDQIFQEL 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 +G + + HI LR+K+ + + + +GY I Sbjct: 182 WGEKYYTNSSSSIMVHIRHLREKMDDSAENPKYIQTVWGVGYKI 225 >gi|314935217|ref|ZP_07842570.1| DNA-binding response regulator YycF [Staphylococcus hominis subsp. hominis C80] gi|313656552|gb|EFS20291.1| DNA-binding response regulator YycF [Staphylococcus hominis subsp. hominis C80] Length = 233 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 50/224 (22%), Positives = 92/224 (41%), Gaps = 12/224 (5%) Query: 4 LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63 ++DD + D +G + L D+ ++ L G +E+ Sbjct: 7 VVDDEKPIADILEFNLKKEGYEVHCAYDGNDAVDLIYEEEPDIVLLDIML--PGRDGMEV 64 Query: 64 PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123 R +R +P+I ++ S + + G DD V KP RE++ARV A RR Sbjct: 65 CREVRKKYDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYAQP 124 Query: 124 --------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 N I V+ D + +GE L RE + YL + G+ + + + Sbjct: 125 AQESEGTTNEIAIKDIVVYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHLLQ 184 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218 ++G +D + V+ I +LR+K+ + + + ++R +GY Sbjct: 185 TVWG-YDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGY 227 >gi|291523773|emb|CBK89360.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium rectale DSM 17629] gi|291528762|emb|CBK94348.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium rectale M104/1] Length = 229 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 48/227 (21%), Positives = 85/227 (37%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + D G +E N + D+ ++ L G Sbjct: 4 ILIVEDEVAIADLEKDYLELSGFEVEVENDGTSGLARALAEDFDLFILDLML--PGIDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 E+ + IR P++ +S + G DD V KP E++ARV A R + Sbjct: 62 EICKQIREKKNTPILMVSAKKDDIDKIRGLGLGADDYVTKPFSPSELVARVKAHLARYER 121 Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N+ E I++ R V GE +E +L +L N K ++F Sbjct: 122 LIGSATPENDIVEIRGIKIDKTARRVWVNGEEKQFTTKEFDLLTFLAENPNHVFTKEELF 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 I+ + D + V HI K+R+K+ +++ +GY Sbjct: 182 KEIWNM-DSVGDIATVTVHIKKIREKIEMNTAKPQYIETIWGVGYRF 227 >gi|270293142|ref|ZP_06199353.1| DNA-binding response regulator VncR [Streptococcus sp. M143] gi|270279121|gb|EFA24967.1| DNA-binding response regulator VncR [Streptococcus sp. M143] Length = 218 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 50/220 (22%), Positives = 102/220 (46%), Gaps = 6/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++++G D G + L+ + +V+ + + L Sbjct: 3 ILIVEDEEMIREGISDYLTDCGYETIEAADGQEA--LEKFSSYEVALVLLDIQMPKLNGL 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ IR SQVP++ ++ + + + F S D + KP + RV AI++R Sbjct: 61 EVLAEIRKTSQVPVLMLTAFQDEEYKMSAFASLADGYLEKPFSLSLLKVRVDAIFKRYYD 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + +V + + GE + +E IL+YL+ N G+ + ++QI A++ + Sbjct: 121 TGRVFSYKDTKVDFESYSASLAGEEVAINAKELEILDYLVKNEGRALTRSQIIDAVWKVT 180 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 DE + V++ +I +LRKKL D + + R +GY ++ Sbjct: 181 DEVPFDRVIDVYIKELRKKLDL----DCILTVRNVGYKLE 216 >gi|110800218|ref|YP_696604.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124] gi|168204892|ref|ZP_02630897.1| DNA-binding response regulator [Clostridium perfringens E str. JGS1987] gi|168208625|ref|ZP_02634250.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC 3626] gi|168214155|ref|ZP_02639780.1| DNA-binding response regulator [Clostridium perfringens CPE str. F4969] gi|168215550|ref|ZP_02641175.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239] gi|182624373|ref|ZP_02952157.1| DNA-binding response regulator [Clostridium perfringens D str. JGS1721] gi|110674865|gb|ABG83852.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124] gi|170663696|gb|EDT16379.1| DNA-binding response regulator [Clostridium perfringens E str. JGS1987] gi|170713053|gb|EDT25235.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC 3626] gi|170714338|gb|EDT26520.1| DNA-binding response regulator [Clostridium perfringens CPE str. F4969] gi|177910376|gb|EDT72753.1| DNA-binding response regulator [Clostridium perfringens D str. JGS1721] gi|182382004|gb|EDT79483.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239] Length = 223 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 45/222 (20%), Positives = 98/222 (44%), Gaps = 7/222 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D ++ F +G ++ + E + S D++ ++ L Sbjct: 6 LIVEDEIRIRFLVRDYFKKEGFNVLEASDGEEALRIFSENIVDLAILDIM--MPKLDGLA 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRLK 120 + R IR S P+I ++ + L ++ G DD + KP + +LA+ A Sbjct: 64 VCRNIREVSNTPIILLTAKSQEEDKLLGYELGADDYMTKPFSPKVLLAKAKALLRRTGTL 123 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 N + + + + ++ GE L +E +L YL +N G +++ +I ++G Sbjct: 124 NDKNILDFNGLTINKLSHEVKLNGEELLLSPKEYDLLIYLSSNEGIALSRDRILDNVWG- 182 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D + V+++I +LR+KL +K + + + R GY + Sbjct: 183 YDYFGDIRTVDTNIKRLREKLLDK--ANYIATVRGSGYKFEV 222 >gi|325067651|ref|ZP_08126324.1| two-component system response regulator [Actinomyces oris K20] gi|326772054|ref|ZP_08231339.1| DNA-binding response regulator [Actinomyces viscosus C505] gi|326638187|gb|EGE39088.1| DNA-binding response regulator [Actinomyces viscosus C505] Length = 226 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 41/220 (18%), Positives = 86/220 (39%), Gaps = 5/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A + + + + + + D+ ++ L G + Sbjct: 5 ILVVDDDASLAEMIGIMLESESYTPTLCHDGAKALDAFHEVNPDLVLLDLML--PGLDGV 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-ILARVAAIYRRLK 120 E+ R+IR+ S VP+I ++ Q + ++G DD V KP +E + + R Sbjct: 63 EICRLIRSESDVPIIMLTARTDTQDVVAGLEAGADDYVTKPFKSKELLARVSTRLRRTNP 122 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + G + + G + V L E +L L + K + ++ S ++G Sbjct: 123 GAAEHVRAGDLDIDVAGHQVKRGESVISLTPLEFELLVTLARSPWKVFTREELLSQVWG- 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYS 219 + + +V H+ +LR K+ + + R +GY Sbjct: 182 YQHPADTRLVNVHVQRLRAKIEKDPERPSIVVTVRGVGYR 221 >gi|256833021|ref|YP_003161748.1| two component transcriptional regulator, winged helix family [Jonesia denitrificans DSM 20603] gi|256686552|gb|ACV09445.1| two component transcriptional regulator, winged helix family [Jonesia denitrificans DSM 20603] Length = 232 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 44/229 (19%), Positives = 81/229 (35%), Gaps = 16/229 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G E + + D ++ L G L Sbjct: 4 ILIVEDEPAIATAIAQRLTAEGWRTEVARDGLAAVDAAARLQPDAVVLDVML--PGIDGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112 E+ R I+A VP++ ++ L G DD + KP RE Sbjct: 62 EVCRRIQADRPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELVARLKALLRRVDR 121 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 AA ++ G + V R E L E +L L + + + + Sbjct: 122 AAQASVSPAEESKITVGDVVVDRQQRRVYRGVEEIHLTPTEFDLLVMLASAPKTVLTRER 181 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + ++ D + V+SHI LR+KL G D + + +GY+ + Sbjct: 182 LLAEVWDWVDASG-TRTVDSHIKALRRKL----GADLIRTVHGVGYAFE 225 >gi|262203510|ref|YP_003274718.1| response regulator receiver [Gordonia bronchialis DSM 43247] gi|262086857|gb|ACY22825.1| response regulator receiver [Gordonia bronchialis DSM 43247] Length = 225 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 44/220 (20%), Positives = 87/220 (39%), Gaps = 5/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A + + + +G R D+ ++ L G + Sbjct: 5 ILVVDDDAALAEMLTIVLRGEGFEPFVVGDGTQALTAVREIRPDLVLLDLML--PGMNGI 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R++RA S VP++ ++ + +SG DD + KP +E++ARV A RR Sbjct: 63 DVCRVLRADSGVPIVMLTAKSDTVDVVLGLESGADDYMVKPFKPKELVARVRARLRRTDE 122 Query: 122 SNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 GP+ + G L E +L L + + + ++G Sbjct: 123 EPAELLSIGPVEIDVPAHKVTRDGVPISLTPLEFDLLVALARKPRQVFTRDVLLEQVWG- 181 Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219 + + +V H+ +LR K+ + + V + R +GY Sbjct: 182 YRHPADTRLVNVHVQRLRAKVETDPENPEVVLTVRGVGYK 221 >gi|156935054|ref|YP_001438970.1| transcriptional regulator PhoB [Cronobacter sakazakii ATCC BAA-894] gi|156533308|gb|ABU78134.1| hypothetical protein ESA_02905 [Cronobacter sakazakii ATCC BAA-894] Length = 229 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 38/224 (16%), Positives = 93/224 (41%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A +++ + +G + + D+ ++ L G + Sbjct: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWML--PGGSGI 62 Query: 62 ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 + + I+ ++P++ ++ + + ++G DD + KP +E++AR+ A+ RR Sbjct: 63 QFIKHIKREALTREIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + E + + + E ++L + M + + ++ Q+ + Sbjct: 123 ISPMAVDEVIEMQGLSLDPSSHRVMTGENPLDMGPTEFKLLHFFMTHPERVYSREQLLNN 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + VE+ V+ HI +LRK L V + R GY Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALEQSGHDRMVQTVRGTGYRF 225 >gi|228477753|ref|ZP_04062382.1| DNA-binding response regulator VncR [Streptococcus salivarius SK126] gi|228250642|gb|EEK09853.1| DNA-binding response regulator VncR [Streptococcus salivarius SK126] Length = 217 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 45/220 (20%), Positives = 92/220 (41%), Gaps = 7/220 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D L+++G + G + + L D+ ++ L L Sbjct: 3 ILIVEDEVLIREGMSDYLMECGYEVFEAGDGQEALDLFHREAPDLVLLDIQLPI--LNGL 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IR S VP++ ++ + + L F D + +L + Sbjct: 61 EVLKEIRKTSSVPVLMLTAFHDEEYKLTAFGELADGY-LEKPFSLSLLKVRIEAIFKKLQ 119 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + G RV + + G+ + +E ILEYL+ + GK ++QI A++ Sbjct: 120 PSRVFTYGEARVDFESYTASLAGQAISMNAKELEILEYLLQHEGKARTRSQILDAVWKET 179 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +E + V++ +I +LRKKL D + + R +GY ++ Sbjct: 180 EEIPFDRVIDVYIKELRKKLEL----DCIVTVRNVGYKLE 215 >gi|157371792|ref|YP_001479781.1| DNA-binding transcriptional regulator BaeR [Serratia proteamaculans 568] gi|157323556|gb|ABV42653.1| two component transcriptional regulator, winged helix family [Serratia proteamaculans 568] Length = 239 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 43/222 (19%), Positives = 88/222 (39%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G + + + + ++ L G L Sbjct: 11 IMIVEDEPKLGQLLVDYLQAAGYATHWLTNGSEVVPAVHAHSPALILLDLML--PGSDGL 68 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R +R + +P++ ++ L + G DD + KP RE++ARV I RR Sbjct: 69 TVCRELRRFTDIPVVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCYR 128 Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + + QG++ L E R+L+ L + G ++ Q+ + +Y Sbjct: 129 PLDNTQEETQLHIDEPRFQASYQGQMLDLTPAEFRLLKTLASQPGNVFSREQLLNNLYDD 188 Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + V + ++SHI LR+KL + S +GY + Sbjct: 189 Y-RVVTDRTIDSHIKNLRRKLELIDGEKSFIRSVYGVGYRWE 229 >gi|154686246|ref|YP_001421407.1| YvrH [Bacillus amyloliquefaciens FZB42] gi|42491108|emb|CAE11245.1| YvrH protein [Bacillus amyloliquefaciens FZB42] gi|154352097|gb|ABS74176.1| YvrH [Bacillus amyloliquefaciens FZB42] Length = 267 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 43/225 (19%), Positives = 92/225 (40%), Gaps = 10/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD + + + +G+ + ++ D+ ++ ++ + Sbjct: 41 LIIDDEKEILELIKTVLIREGIDRVVTASTARDGLAQFHQENPDLVILD--IMLPDGEGY 98 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-----Y 116 ++ + IR S VP+I +S + G DD + KP +E+ RV A Y Sbjct: 99 DICKQIRDISHVPIIFLSAKGEETDKIVGLAIGGDDYITKPFSPKEVAYRVKAQLRRVSY 158 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + + GP + + L +E ++ Y + + + ++K ++ A Sbjct: 159 LQPSQTGTIIKKGPFELNQQQAELTKNEAAIELTPKELMLMTYFLQHPNRVISKETLYQA 218 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++G D +N V HI +LR+K+ N D + + + LGY Sbjct: 219 VWGE-DFFGSDNTVMVHIRRLREKIENTPSKPDFLVTVKGLGYKF 262 >gi|331091977|ref|ZP_08340809.1| hypothetical protein HMPREF9477_01452 [Lachnospiraceae bacterium 2_1_46FAA] gi|330402876|gb|EGG82443.1| hypothetical protein HMPREF9477_01452 [Lachnospiraceae bacterium 2_1_46FAA] Length = 250 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 44/233 (18%), Positives = 85/233 (36%), Gaps = 14/233 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++ L + + ++ E L V + ++ + L Sbjct: 15 IMVVDDDADIRQALRVLLETENYEVSEADNGEMALELLDET---VDLMILDIMMPEKDGL 71 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 R +R P++ ++ + F SG DD + KP E+L RV+A+ RR V Sbjct: 72 STCREVREKYTFPILFLTAKTTENDKYVGFLSGGDDYLTKPFSKMEVLTRVSAMLRRYHV 131 Query: 122 SN--------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 +++ + + L E IL ++ N + ++ Sbjct: 132 YQGKGSESKEKYICIKDLKIDRNVSRVFQGDKEIVLTNTEYDILVFMAKNPNRVFTLEEL 191 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI--DWN 223 + I+G V HI LR+KL + + + GY+I + N Sbjct: 192 YEKIWGEPYHFSVNATVMVHIRNLRRKLNDTSQASRYIKNVWGKGYAIVDETN 244 >gi|261820614|ref|YP_003258720.1| BaeR family transcriptional regulator [Pectobacterium wasabiae WPP163] gi|261604627|gb|ACX87113.1| two component transcriptional regulator, winged helix family [Pectobacterium wasabiae WPP163] Length = 242 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 44/226 (19%), Positives = 83/226 (36%), Gaps = 9/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + + + + ++ L G L Sbjct: 13 ILIVEDEPKLGQLLVDYLQAADYATHWLPNGNDVIEWVRQHSPSLILLDLML--PGCDGL 70 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R IR S VP+I ++ L + G DD + KP RE++ RV + RR Sbjct: 71 TICRTIRQFSNVPIIMVTARSEEIDRLLGLEIGADDYICKPFSPREVVVRVRTLLRRCGW 130 Query: 122 SNNRAETGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 N+ + + G G+ L E R+L+ L GK ++ + Sbjct: 131 QNDGMKAAEKSETALLIDKSGFQASYLGQNLDLTPAEFRLLKTLSTEPGKVFSREALLDK 190 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 +Y + V + ++SHI LR+KL + + +GY + Sbjct: 191 LYDDY-RVVTDRTIDSHIKNLRRKLEQLDEETSFIRTVYGIGYRWE 235 >gi|253999965|ref|YP_003052028.1| two component transcriptional regulator PhoB [Methylovorus sp. SIP3-4] gi|313201938|ref|YP_004040596.1| two component transcriptional regulator PhoB [Methylovorus sp. MP688] gi|253986644|gb|ACT51501.1| two component transcriptional regulator PhoB, winged helix family [Methylovorus sp. SIP3-4] gi|312441254|gb|ADQ85360.1| two component transcriptional regulator PhoB, winged helix family [Methylovorus sp. MP688] Length = 228 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 51/224 (22%), Positives = 99/224 (44%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D +++ G + S+E + L A D+ ++ L G + Sbjct: 5 ILIVEDEPAIQELLALNLTQAGHNPIRALSVEQAQMLIREALPDLIILDWML--PGMSGI 62 Query: 62 ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IY 116 E R +++ +P+I ++ + + G DD V KP RE+ AR+ A Sbjct: 63 EFARKLKSDEFTKAIPIIMLTARGEEADKVKGLEVGADDYVTKPFSPRELNARIKAVLRR 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 R +++++ E G +R+ G L E R+L YLM+N + +++Q+ Sbjct: 123 RAPQMTDDPIEVGGLRLDPVTHRVTGNGTTLDLGPTEFRLLHYLMSNPERVHSRSQVLDR 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G VE+ V+ HI +LR L + D + + R +GY Sbjct: 183 VWGDR-VFVEDRTVDVHIRRLRLALADSGHEDLIQTVRGVGYRF 225 >gi|228996926|ref|ZP_04156559.1| Two-component response regulator [Bacillus mycoides Rock3-17] gi|229004602|ref|ZP_04162340.1| Two-component response regulator [Bacillus mycoides Rock1-4] gi|228756643|gb|EEM05950.1| Two-component response regulator [Bacillus mycoides Rock1-4] gi|228762805|gb|EEM11719.1| Two-component response regulator [Bacillus mycoides Rock3-17] Length = 250 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 44/228 (19%), Positives = 87/228 (38%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +L+DD + D + + + + L + D+ ++ L Sbjct: 17 ILLVDDEQGILDMLVLTLKKENFIHVTTALNGSETLNLVKNHPFDIILLDVML--PDIDG 74 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL R IR ++ P++ ++ S L G DD + KP + E+ AR+ RR + Sbjct: 75 FELCRQIRNYTNTPILFVTARSSDLDKLTGLGIGGDDYITKPFNPLEVAARINVQLRRQQ 134 Query: 121 VSNNRAETGPIRVFSDGRDPEV-------QGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + + + G+ +E +L +L + + Q+ Sbjct: 135 MLIRHHKEEHSNLHFESFSLYPSEGLITVNGKSVHCTAKELELLTFLCTHPNRIFTAEQL 194 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220 + ++GL ++ V HISKLRKK+ + + + R +GY Sbjct: 195 YEQVWGLT-SMGDDKTVVMHISKLRKKIEEDPKSPTYIVNLRGIGYKF 241 >gi|225860601|ref|YP_002742110.1| VncR, response regulator [Streptococcus pneumoniae Taiwan19F-14] gi|298230065|ref|ZP_06963746.1| VncR, response regulator [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255464|ref|ZP_06979050.1| VncR, response regulator [Streptococcus pneumoniae str. Canada MDR_19A] gi|298502394|ref|YP_003724334.1| response regulator [Streptococcus pneumoniae TCH8431/19A] gi|225728327|gb|ACO24178.1| VncR, response regulator [Streptococcus pneumoniae Taiwan19F-14] gi|298237989|gb|ADI69120.1| response regulator [Streptococcus pneumoniae TCH8431/19A] gi|327390338|gb|EGE88679.1| response regulator [Streptococcus pneumoniae GA04375] Length = 218 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 50/220 (22%), Positives = 102/220 (46%), Gaps = 6/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++++G D G + L+ + +V+ + + L Sbjct: 3 ILIVEDEEMIREGVSDYLTDCGYETIEAADGQEA--LEQFSSYEVALVLLDIQMPKLNGL 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ IR SQVP++ ++ + + + F S D + KP + RV AI++R Sbjct: 61 EVLAEIRKTSQVPVLMLTAFQDEEYKMSAFASLADGYLEKPFSLSLLKVRVDAIFKRYYD 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + +V + + G+ P+ +E IL+YL+ N G+ + ++QI A++ Sbjct: 121 TGRIFSYKDTKVDFESYSASLAGQEVPINAKELEILDYLVKNEGRALTRSQIIDAVWKAT 180 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 DE + V++ +I +LRKKL D + + R +GY ++ Sbjct: 181 DEVPFDRVIDVYIKELRKKLDL----DCIFTVRNVGYKLE 216 >gi|157692001|ref|YP_001486463.1| response regulator [Bacillus pumilus SAFR-032] gi|157680759|gb|ABV61903.1| possible response regulator [Bacillus pumilus SAFR-032] Length = 228 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 48/224 (21%), Positives = 94/224 (41%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G + + D+ ++ L L Sbjct: 6 ILVVEDEKKIARVLSLELQYEGYEVTVKETGIDGLQALEEESFDLVLLDVML--PELSGL 63 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +R + P++ I+ S+ + D G +D + KP E+LAR+ A R Sbjct: 64 EVLRRVRKTNTATPIMLITARDSVPDKVSGLDLGANDYITKPFDIEELLARIRAQLRLNI 123 Query: 121 VSNNRAETGPIRVF----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 ET RD + G++ L RE +L +L+ ++ + + + Q+ +A Sbjct: 124 NEQQEKETELSIADLTVNEKTRDIQRAGQMLELTPREYDLLVHLLKHQQQVLTRDQLLTA 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G FD + NVV+ +I LRKK+ + + R +GY + Sbjct: 184 VWG-FDYFGDTNVVDVYIRYLRKKVDYPFEKQLIHTVRGVGYVM 226 >gi|118616306|ref|YP_904638.1| two component system response phosphate regulon transcriptional regulator, PhoP [Mycobacterium ulcerans Agy99] gi|118568416|gb|ABL03167.1| two component system response phosphate regulon transcriptional regulator, PhoP [Mycobacterium ulcerans Agy99] Length = 240 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 49/225 (21%), Positives = 92/225 (40%), Gaps = 10/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + G + + R D ++ G Sbjct: 16 ILVVDDEDNIVELLSVSLKFQGFEVHTATNGAQALDRARETRPDAVILDVM--MPGMDGF 73 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118 + R ++A P + ++ SLQ + G DD V KP E++AR+ I RR Sbjct: 74 GVLRRLQADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAG 133 Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + N+R I + + + G+ L E +L Y + N G ++K +I Sbjct: 134 KGSAEPRNSRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILD 193 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +D + NVVES++S LR+K+ + + + R +GY + Sbjct: 194 HVW-RYDFGGDVNVVESYVSYLRRKI-DTGDKRLLHTLRGVGYVL 236 >gi|146340889|ref|YP_001205937.1| OmpR family two-component transcriptional regulator [Bradyrhizobium sp. ORS278] gi|146193695|emb|CAL77712.1| two-component transcriptional regulator (OmpR family), BaeR/ChvL/OmpR-like [Bradyrhizobium sp. ORS278] Length = 231 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 48/224 (21%), Positives = 87/224 (38%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ G+++ + R D+ ++ L Sbjct: 5 ILIVDDDPHIREVVRVALSKAGMAVTEAADGRAALARFADDRPDLIVLDVG--MPEFDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR SQVP++ +S + + G DD V KP RE++ARV I RR+ Sbjct: 63 EVCRRIRRTSQVPILFLSARDEEIDRILGLEIGGDDYVTKPFSPRELVARVNVILRRVAT 122 Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + E + L E I+ L+ ++ QI SA Sbjct: 123 GHRSDEAEELVHGRLRLDPQQHLARFGDTPLTLTALEFSIVRTLLTRPAVVFSREQIMSA 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 Y + V + ++SHI +R KL D +++ +G+ + Sbjct: 183 AY-QLNIQVSDRTIDSHIRNIRAKLATAGCDDAIETVHGVGFRL 225 >gi|89097843|ref|ZP_01170730.1| two-component response regulator [Bacillus sp. NRRL B-14911] gi|89087345|gb|EAR66459.1| two-component response regulator [Bacillus sp. NRRL B-14911] Length = 230 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 44/225 (19%), Positives = 85/225 (37%), Gaps = 10/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ + G S + D+ ++ GE Sbjct: 9 ILIVDDEEDMRHLIGMYLENAGFSCRYAAGGKETLEEIQKNLPDLILLDIM--MPGEDGF 66 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA----AIYR 117 + +RA +VP+I +S + G DD + KP E+ AR+ Sbjct: 67 SVCERVRAQYEVPVIFLSAKGEEWDKVKGLQIGGDDYIVKPFSPGELTARIHAVLRRSGS 126 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 +N G I + R +V+G L +E +L + + ++ +++ Q+ I Sbjct: 127 ISGADSNITSAGKITIDKKARSVKVEGSYIMLTLKEYELLMFFIGHQSHALSREQLLEQI 186 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +G+ D V++HI LR KL D + + +GY + Sbjct: 187 WGM-DYLGSLRTVDTHIKTLRMKL---GAGDYIKTVWGIGYKFEV 227 >gi|227502538|ref|ZP_03932587.1| response regulator [Corynebacterium accolens ATCC 49725] gi|306835103|ref|ZP_07468144.1| response regulator [Corynebacterium accolens ATCC 49726] gi|227076700|gb|EEI14663.1| response regulator [Corynebacterium accolens ATCC 49725] gi|304569018|gb|EFM44542.1| response regulator [Corynebacterium accolens ATCC 49726] Length = 236 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 51/235 (21%), Positives = 97/235 (41%), Gaps = 18/235 (7%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + D L +G + D+ ++ L G Sbjct: 4 ILIVEDEESLADPLAFLLRKEGFEPIIALDGPSALEKFADNDIDIVLLDLML--PGMSGT 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + +RA S VP+I ++ + + + G DD V KP RE++AR+ A+ RR Sbjct: 62 DVCKQLRATSSVPVIMVTARDAEIDKVVGLELGADDYVTKPYSSRELIARIRAVLRRGND 121 Query: 122 SNNRAETGPI--------------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167 + A+ ++ + V GE +P +E +LEYL+ N G+ Sbjct: 122 QASNADAAEGAEAEDEQILSGGRVKMDVERHIVTVAGEPVAMPLKEFDLLEYLLRNAGRV 181 Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221 + + Q+ I+G D + ++ HI +LR K+ + + R LGY + Sbjct: 182 LTRGQLIDRIWGA-DYVGDTKTLDVHIKRLRTKIEEHPSRPKHLVTVRGLGYKFE 235 >gi|269119755|ref|YP_003307932.1| two component transcriptional regulator, winged helix family [Sebaldella termitidis ATCC 33386] gi|268613633|gb|ACZ08001.1| two component transcriptional regulator, winged helix family [Sebaldella termitidis ATCC 33386] Length = 217 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 39/221 (17%), Positives = 92/221 (41%), Gaps = 12/221 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++ + +G + E L D+ ++ + Sbjct: 3 ILIVEDEERIRKVVRSFLVKNGYIVREAADGEEGLDLFYEWNPDLVLLDVM--MPKKDGY 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R I++ P++ ++ + + + G DD + KP + + R+ + + Sbjct: 61 EVCRAIKSEKTTPVLMLTAKTQEEDEIRGLEIGADDYIRKPFSLKILELRL-----KNLL 115 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + G R + ++ + ++ LP +E +L YL N K ++ QI + ++ L Sbjct: 116 GDEIYTIGNFRFLKNEKNVYLNEKIVDLPPKEYDLLFYLAKNHSKIFSREQILNNVWDLL 175 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 E+ + V++HI LRKK+ G + + + + GY + Sbjct: 176 CES-DPRTVDTHIKNLRKKI----GHEYITTVKGFGYKFEV 211 >gi|46908754|ref|YP_015143.1| DNA-binding response regulator [Listeria monocytogenes serotype 4b str. F2365] gi|254854409|ref|ZP_05243757.1| DNA-binding response regulator [Listeria monocytogenes FSL R2-503] gi|300766082|ref|ZP_07076050.1| DNA-binding response regulator [Listeria monocytogenes FSL N1-017] gi|46882026|gb|AAT05320.1| DNA-binding response regulator [Listeria monocytogenes serotype 4b str. F2365] gi|258607809|gb|EEW20417.1| DNA-binding response regulator [Listeria monocytogenes FSL R2-503] gi|300513228|gb|EFK40307.1| DNA-binding response regulator [Listeria monocytogenes FSL N1-017] Length = 225 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 41/223 (18%), Positives = 92/223 (41%), Gaps = 5/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +G + N E + + + ++ I+ Sbjct: 4 ILVVDDDRHILKLVGHYLRAEGFRVLEANDGVEAEKIVETEQVHLAVIDVM--MPNMDGF 61 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119 EL + +R +++ +P+I ++ +L F+ G DD V KP E++ R+ A + R Sbjct: 62 ELCKKMRTSYTDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELIFRIRALLRRSN 121 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + S + G I + ++ + +P +E +L L + G+ + ++ I+ Sbjct: 122 QASEVKINIGNITIDQKSYGIKIGNQERMIPVKEFELLYQLASYPGRIFTREELIERIW- 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 D + V+ HI +LR + + + R +GY ++ Sbjct: 181 QRDYDGSDRTVDVHIKRLRDHFDEEKDGIRIVTVRGVGYKLEE 223 >gi|288906147|ref|YP_003431369.1| phosphate regulon response regulator PhoB [Streptococcus gallolyticus UCN34] gi|306832192|ref|ZP_07465346.1| response regulator [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|288732873|emb|CBI14452.1| phosphate regulon response regulator PhoB [Streptococcus gallolyticus UCN34] gi|304425631|gb|EFM28749.1| response regulator [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 225 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 43/225 (19%), Positives = 92/225 (40%), Gaps = 6/225 (2%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEK 59 M ++D +++ + G +GF + E S + D+ ++ L G G Sbjct: 1 MIYCVEDDDDIRELMLYTLKTTGFVAQGFPNAELFWQAIESQKPDLILLDIMLPGSDGLS 60 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYR 117 +LE + + + +P+I + + + D G DD + KP E+++R+ A Sbjct: 61 ILEELKGKMSTADIPVIMATAKGTEFDKVKGLDMGSDDYLVKPFGMMEMISRIKAVLRRS 120 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + G + + + G+ L +E +L LM + + ++ + + Sbjct: 121 QKSQRKQILQVGNLSLDIQNYTVKKDGKDISLTLKEFELLGLLMKYPNRVFTRQELLNQV 180 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +G + E V+ HI LR KL + + + R +GY ++ Sbjct: 181 WGEY-FVGETRTVDVHIGTLRTKLGDASH--LIKTIRGVGYRLEE 222 >gi|182436017|ref|YP_001823736.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326776641|ref|ZP_08235906.1| two component transcriptional regulator, winged helix family [Streptomyces cf. griseus XylebKG-1] gi|178464533|dbj|BAG19053.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326656974|gb|EGE41820.1| two component transcriptional regulator, winged helix family [Streptomyces cf. griseus XylebKG-1] Length = 245 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 47/227 (20%), Positives = 94/227 (41%), Gaps = 15/227 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + D A +G ++ + + D+ ++ L G LE Sbjct: 22 LVVEDDPTIVDAISARLRAEGFLVQTALDGPAAVDAAEAWQPDLMVLDIML--PGFDGLE 79 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R ++A VP++ ++ L G DD + KP RE+ ARV + RR++ + Sbjct: 80 VCRRVQAQRPVPVMMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRVERA 139 Query: 123 NNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 A T + R V+ E L E +L L +++ Q+ Sbjct: 140 ALAAVTPRSGILRLGELEIDHAQRRVRVRAEDVHLTPTEFDLLVCLANTPRAVLSREQLL 199 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + ++ D + V+SHI LR+K+ G + + + +GY+++ Sbjct: 200 AEVWDWADASG-TRTVDSHIKALRRKI----GAERIRTVHGVGYALE 241 >gi|328956718|ref|YP_004374104.1| two-component response regulator [Carnobacterium sp. 17-4] gi|328673042|gb|AEB29088.1| two-component response regulator [Carnobacterium sp. 17-4] Length = 241 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 46/237 (19%), Positives = 96/237 (40%), Gaps = 21/237 (8%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61 +++DD + +G ++ + + D ++ L G + Sbjct: 5 LIVDDEQSILTLLAFNLEKEGYQVDTALDGLEGYEMAVAHPYDFIILDLMLPSMGGMDIC 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 + R + P++ ++ + + G DD + KP RE+LAR+ AI RR+ Sbjct: 65 KKLRQ--EKIEAPIMMLTAKDDELEKIIGLELGADDYMTKPFSPREVLARMKAIMRRMSS 122 Query: 121 ---------------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRG 165 + + G I++ + V+G+ + +E +L Y++ Sbjct: 123 KSKAEEALKESNSTAEQDELIKVGDIQIDPSQYEVIVRGKKIDVTPKEFELLMYMIKRIN 182 Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 + +++ Q+ AI+ FD A E +V+ HIS LR+K+ + + + R GY + Sbjct: 183 RILSREQLLDAIW-NFDYAGETRIVDVHISHLREKIEVDTKNPTYIRTVRGFGYKFE 238 >gi|329944314|ref|ZP_08292573.1| DNA-binding response regulator MtrA [Actinomyces sp. oral taxon 170 str. F0386] gi|328531044|gb|EGF57900.1| DNA-binding response regulator MtrA [Actinomyces sp. oral taxon 170 str. F0386] Length = 226 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 41/220 (18%), Positives = 86/220 (39%), Gaps = 5/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A + + + + + + D+ ++ L G + Sbjct: 5 ILVVDDDASLAEMIGIMLESESYTPTLCHDGAKALDAFHEVSPDLVLLDLML--PGLDGV 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-ILARVAAIYRRLK 120 E+ R+IR+ S VP+I ++ Q + ++G DD V KP +E + + R Sbjct: 63 EICRLIRSESDVPIIMLTARTDTQDVVAGLEAGADDYVTKPFKSKELLARVSTRLRRTNP 122 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + G + + G + V L E +L L + K + ++ S ++G Sbjct: 123 GAAEHVRAGDLDIDVAGHQVKRGETVIALTPLEFELLVTLARSPWKVFTREELLSQVWG- 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYS 219 + + +V H+ +LR K+ + + R +GY Sbjct: 182 YQHPADTRLVNVHVQRLRAKIEKDPERPSIVVTVRGVGYR 221 >gi|260433981|ref|ZP_05787952.1| DNA-binding response regulator [Silicibacter lacuscaerulensis ITI-1157] gi|260417809|gb|EEX11068.1| DNA-binding response regulator [Silicibacter lacuscaerulensis ITI-1157] Length = 226 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 50/221 (22%), Positives = 100/221 (45%), Gaps = 6/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D +D FG++G +E + + + D ++ L G L Sbjct: 5 LLIVEDDEDTRDFIAKGFGEEGYVVETASDGREGLYHATDGGFDAVVLDRML--PGLDGL 62 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + + +RA + P++ ++ ++ + +G DD + KP +E+ AR+ A+ RR + Sbjct: 63 AVIKSMRAAGVKTPVLMLTAMSAVDERVKGLRAGADDYLVKPFSFQELHARIEALLRRPQ 122 Query: 121 VSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 S + + + R G L RE +ILE+ + + + V++T + ++ Sbjct: 123 ESEETPTLKCRDLEMDLLTRKVTRNGREITLTPREFQILEFFLRRKNRVVSRTMLLEGVW 182 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 + NVV+ HISKLRK+L G +++ R GY Sbjct: 183 D-YHFDPNTNVVDVHISKLRKQLDEAGGPPLIETVRGAGYM 222 >gi|227358160|ref|ZP_03842501.1| phosphate regulon transcriptional regulator (two-component response regulator) [Proteus mirabilis ATCC 29906] gi|227161496|gb|EEI46533.1| phosphate regulon transcriptional regulator (two-component response regulator) [Proteus mirabilis ATCC 29906] Length = 229 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 33/222 (14%), Positives = 86/222 (38%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++++D +++ + +G + D+ ++ + G G +V Sbjct: 5 ILVVEDETAIREMICFVLEQNGFQPIEAEDYDTALSFLIDPYPDLVLLDWMIPGGSGIQV 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118 ++ + +P+I ++ + + ++G DD V KP +E+ + Sbjct: 65 IKQMKREINTRDIPIIMLTAKGEEEDKVKGLETGADDYVIKPFSPKELVARVKAILRRLS 124 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + E + + Q + + E ++L + M + + ++ Q+ + ++ Sbjct: 125 PMSAEDVIEFNGLSLDPVSHRVTSQDKPIDMGPTEFKLLHFFMTHPERVYSREQLLNYVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G + VE+ V+ HI +LRK + + + R GY Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKAIEQDGHDRMIQTVRGTGYRF 225 >gi|225572449|ref|ZP_03781313.1| hypothetical protein RUMHYD_00746 [Blautia hydrogenotrophica DSM 10507] gi|225040086|gb|EEG50332.1| hypothetical protein RUMHYD_00746 [Blautia hydrogenotrophica DSM 10507] Length = 226 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 42/223 (18%), Positives = 90/223 (40%), Gaps = 6/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + ++ D + E L S + +++ I ++ Sbjct: 6 ILVVDDESRMRKLVKDFLVRDNFEVIEAADGEEAVDLFYSDK-NIALIILDVMMPKMDGW 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV--NKPIHHREILARVAAIYRRL 119 E+ R IR +S+VP+I ++ + L F+ GVD+ + Sbjct: 65 EVCREIRKNSKVPIIMLTARGDERDELLGFELGVDEYISKPFSPKILVARVEAILRRTGQ 124 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + G I V V+G L +E +L Y + N+G +++ +I ++++ Sbjct: 125 TNKEDVLSLGGIVVDKAAHQVTVEGSPIELSFKEFELLSYFIENQGIALSREKILNSVW- 183 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D + +++H+ KLR KL K + + + +GY + Sbjct: 184 NYDYFGDARTIDTHVKKLRSKLGEKG--EYIKTVWGMGYKFEV 224 >gi|157369284|ref|YP_001477273.1| two component transcriptional regulator [Serratia proteamaculans 568] gi|157321048|gb|ABV40145.1| two component transcriptional regulator, winged helix family [Serratia proteamaculans 568] Length = 229 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 39/222 (17%), Positives = 91/222 (40%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D A +++ + +G + S D+ ++ L G G + Sbjct: 5 ILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRLSEPFPDLVLLDWMLPGGSGIQF 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ + +P++ ++ + + + G DD + KP +E++AR+ A+ RR+ Sbjct: 65 IKHMKREAMTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRRIS 124 Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 E + + + + E ++L + M + + ++ Q+ + ++ Sbjct: 125 PMAVEEVIEMQGLSLDPSSHRVMANEQALDMGPTEFKLLHFFMTHPERVYSREQLLNHVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G + VE+ V+ HI +LRK L V + R GY Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALETSGHDKMVQTVRGTGYRF 225 >gi|12002210|gb|AAG43239.1|AF123314_2 putative response regulator rr [Corynebacterium glutamicum] Length = 232 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 56/231 (24%), Positives = 100/231 (43%), Gaps = 14/231 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + D L +G S D+ ++ L G Sbjct: 4 ILIVEDEESLADPLAFLLRKEGFDTIIAGDGPTALVEFSRNEIDIVLLDLML--PGMSGT 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + +R+ S VP+I ++ S + + G DD V KP RE++AR+ A+ RR V Sbjct: 62 DVCKELRSVSTVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLRRRGV 121 Query: 122 SNNRAET----------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + AE G +R+ D V GE +P +E +LEYL+ N G+ + + Sbjct: 122 TETEAEELPLDDEILEGGRVRMDVDSHTVTVGGEPVSMPLKEFDLLEYLLRNAGRVLTRG 181 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221 Q+ I+G D + ++ H+ +LR K+ + + R LGY + Sbjct: 182 QLIDRIWGA-DYVGDTKTLDVHVKRLRSKIEEEPSRPRYLVTVRGLGYKFE 231 >gi|257057064|ref|YP_003134896.1| response regulator with CheY-like receiver domain-containing protein and winged-helix DNA-binding domain-containing protein [Saccharomonospora viridis DSM 43017] gi|256586936|gb|ACU98069.1| response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein [Saccharomonospora viridis DSM 43017] Length = 225 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 45/219 (20%), Positives = 89/219 (40%), Gaps = 5/219 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + + +G + + D+ ++ L G ++ Sbjct: 6 LVVDDDPALAEMLTIVLRGEGFDTAVVSDGSRALPALRELKPDLVLLDLML--PGMNGID 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + IRA S VP++ ++ + +SG DD V KP +E++ARV A RR + Sbjct: 64 VCKAIRAESGVPIVMLTAKSDTVDIVLGLESGADDYVVKPFKPKELVARVRARLRRTESE 123 Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 T + G + G+ PL E +L L + + + ++G + Sbjct: 124 PAETLTIGDLTIDVPGHEVTRDGKAIPLTPLEFDLLVALARKPRQVFTREVLLEQVWG-Y 182 Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219 A + +V H+ +LR K+ + V + R +GY Sbjct: 183 RHAADTRLVNVHVQRLRSKVEKDPEHPEVVLTVRGVGYK 221 >gi|197250808|ref|YP_002145379.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197214511|gb|ACH51908.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 229 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 39/224 (17%), Positives = 93/224 (41%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A +++ + +G + + D+ ++ L G L Sbjct: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNKLNEPWPDLILLDWML--PGGSGL 62 Query: 62 ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 + + ++ +P++ ++ + + ++G DD + KP +E++AR+ A+ RR Sbjct: 63 QFIKHLKREALTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + E + + G + E ++L + M + + ++ Q+ + Sbjct: 123 ISPMAVEEVIEMQGLSLDPGSHRVMTGGSPLDMGPTEFKLLHFFMTHPERVYSREQLLNH 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + VE+ V+ HI +LRK L + V + R GY Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALEHSGHDRMVQTVRGTGYRF 225 >gi|163815699|ref|ZP_02207071.1| hypothetical protein COPEUT_01880 [Coprococcus eutactus ATCC 27759] gi|238925901|ref|YP_002939419.1| DNA-binding response regulator [Eubacterium rectale ATCC 33656] gi|253578345|ref|ZP_04855617.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|158449004|gb|EDP25999.1| hypothetical protein COPEUT_01880 [Coprococcus eutactus ATCC 27759] gi|238877578|gb|ACR77285.1| DNA-binding response regulator [Eubacterium rectale ATCC 33656] gi|251850663|gb|EES78621.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] gi|291522656|emb|CBK80949.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Coprococcus catus GD/7] Length = 233 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 49/231 (21%), Positives = 89/231 (38%), Gaps = 13/231 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +DG S+ + ++ D++ ++ L Sbjct: 5 ILIVDDEKEIVDLLEVYLSNDGYSVYKCYNGLEAMKCIKQSQIDLAILDIML--PDIDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L + IR P+I ++ + G DD + KP + E++ARV RR + Sbjct: 63 RLCQKIREKFYFPIIMLTAKIEDSDKIMGLTIGADDYITKPFNPLEVVARVKTQLRRYQS 122 Query: 122 SNNRAETGPIRVFSD----------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 N+ + + G+ L E IL YL ++GK VA Sbjct: 123 YNSPNLSQSEEKDEYDIRGLLINRVSHKCYLYGKEIALTPLEFSILWYLCEHQGKVVASE 182 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 ++F A++ N V +HI +LR+KL + + +GY I+ Sbjct: 183 ELFEAVWKEKYLRNSNNTVMAHIGRLREKLNEPSKNPKFIKTVWGVGYEIE 233 >gi|326789171|ref|YP_004306992.1| transcriptional regulator [Clostridium lentocellum DSM 5427] gi|326539935|gb|ADZ81794.1| two component transcriptional regulator, winged helix family [Clostridium lentocellum DSM 5427] Length = 230 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 46/226 (20%), Positives = 82/226 (36%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++D ++G +E + L + D+ ++ + Sbjct: 6 ILIVDDEKEIRDLIEIYLKNEGYIVEKAGTGLEALQLVEERQIDLIILDVM--MPVVNGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + IR P+I +S + G DD + KP + E++ARV A RR Sbjct: 64 DACIKIREQYNTPIIMLSAKVEDIDKILGLSVGADDYLAKPFNPLELIARVKAQLRRFTK 123 Query: 122 SNNRAETGPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 N + + + G+ L E IL+ L N+G I+ Sbjct: 124 LNTAHTSSKVLEQDGLTLNLETGKVHKNGDEINLTPTELSILKLLWMNKGMVFKIETIYE 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 ++G N V HI KLR+K+ D + + +GY Sbjct: 184 RVWGQEYFD-NNNTVMVHIRKLREKIEENPRTPDYIYTVWGVGYKF 228 >gi|199597241|ref|ZP_03210672.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus rhamnosus HN001] gi|199591757|gb|EDY99832.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus rhamnosus HN001] Length = 234 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 44/230 (19%), Positives = 84/230 (36%), Gaps = 13/230 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 +++DD + + +E + S D ++ L G V Sbjct: 4 ILIVDDEPAILTLLQYNLEAEHYQVETATDGQEALDKVRSEPFDFIILDLMLPSLSGLDV 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARV 112 +I Q P++ ++ + + + G DD V KP REI Sbjct: 64 --TCKIREEKIQTPIMILTAKDNETDKIVGLELGADDYVTKPFSPREIIARIKAIERRSQ 121 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + L + N+ G I + + G L +E +L Y GK +++ Sbjct: 122 SQPQAPLPGNANQITVGQITIDPENYKASKAGHRLQLTPKEFELLVYFAQRVGKTLSRDA 181 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 + + ++G FD E +V+ +S LR K+ + D + + R GY ++ Sbjct: 182 LLNGVWG-FDYPAETRMVDIQVSHLRDKIETDPKHPDYLKTVRGFGYQME 230 >gi|163840387|ref|YP_001624792.1| two-component response regulator [Renibacterium salmoninarum ATCC 33209] gi|162953863|gb|ABY23378.1| two-component response regulator [Renibacterium salmoninarum ATCC 33209] Length = 242 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 45/220 (20%), Positives = 87/220 (39%), Gaps = 5/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + +DG + + + D+ ++ L G + Sbjct: 23 ILVVDDDEALAEMIGIVLRNDGFEPFFCADGSQALEVFRAGKPDLVLLDLML--PGIDGI 80 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R+IRA S VP++ ++ + +SG DD V KP E++ARV A R Sbjct: 81 EVCRLIRAESDVPVVMLTAKADTSDVVRGLESGGDDYVPKPFKPAELVARVRARLRPGDQ 140 Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + I + G L E +L L + + + ++G Sbjct: 141 KTPETLKIADITIDVAGHVVARGETRISLTPLEFDLLVALARKPWQVFTRELLLEQVWG- 199 Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219 + A + +V H+ +LR K+ + + V + R +GY Sbjct: 200 YRHAADTRLVNVHVQRLRSKIEIDPEAPEVVLTVRGVGYK 239 >gi|228900485|ref|ZP_04064711.1| Two-component response regulator vanR [Bacillus thuringiensis IBL 4222] gi|228964897|ref|ZP_04126002.1| Two-component response regulator vanR [Bacillus thuringiensis serovar sotto str. T04001] gi|228794835|gb|EEM42336.1| Two-component response regulator vanR [Bacillus thuringiensis serovar sotto str. T04001] gi|228859162|gb|EEN03596.1| Two-component response regulator vanR [Bacillus thuringiensis IBL 4222] Length = 242 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 38/229 (16%), Positives = 84/229 (36%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +G + ++ E + ++ ++ ++ + Sbjct: 16 ILIVDDDQDIVQFIKVNLMQEGFKVFSAHNGEEALEIINNNSIQLAILDIM--MPQMDGI 73 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARVA 113 EL R +R +P++ +S S + F +G DD + KP E Sbjct: 74 ELCRRVREKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 133 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 ++V + + + R + GE L + E IL + A + + +I Sbjct: 134 FNQNAVQVMEKKINIRGLEIDEVSRTVMLYGETMNLTKTEYDILYLMAAAKNRVFTIEEI 193 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + +++ N V HI++LR K+ + + +GY I+ Sbjct: 194 YESVWKERAYE-SNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIE 241 >gi|313622401|gb|EFR92865.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Listeria innocua FSL J1-023] Length = 240 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 47/233 (20%), Positives = 95/233 (40%), Gaps = 16/233 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A + G + L S + D+ ++ L + Sbjct: 8 ILVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLML--PEMDGI 65 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ + +R VP++ ++ + + G DD + KP RE++AR+ AI RR + Sbjct: 66 EVTKKLRQDKVGVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTE 125 Query: 121 VSNNRAETGPIR-----------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 E + D + +Q ++ L +E +L +L +RGK + Sbjct: 126 GKAEVTEEKTEDTEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFS 185 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 + Q+ ++ +D E +V+ H+S LR K+ + + + R GY ++ Sbjct: 186 RDQLLDTVW-NYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKME 237 >gi|225018521|ref|ZP_03707713.1| hypothetical protein CLOSTMETH_02468 [Clostridium methylpentosum DSM 5476] gi|224948722|gb|EEG29931.1| hypothetical protein CLOSTMETH_02468 [Clostridium methylpentosum DSM 5476] Length = 244 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 46/221 (20%), Positives = 92/221 (41%), Gaps = 6/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ +D A ++ +G + E S + ++ L Sbjct: 26 ILIAEDEAKLRYVVSGYLKSEGYHVVEAEDGEDALDKFYSDNFSLVLLDIM--MPKRDGL 83 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ IR S VP+I ++ + L+ F G D+ ++KP + ++ RV +I +R + Sbjct: 84 EVCAEIRKLSDVPIIMLTARNTEFDELNGFQHGADEYISKPFSPKILVTRVKSILKRAGL 143 Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + ++ V + L RE +L YL+AN+ + + QI A++G+ Sbjct: 144 LQDSEFNMGNLKISYREHSVYVDDQRISLTPREYDLLCYLVANKNIVLNREQILQAVWGM 203 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D + V++HI LR K+ + + + R +GY + Sbjct: 204 -DYEGDIRTVDTHIKCLRIKI--PGAQEYIKTIRKIGYKFE 241 >gi|288555257|ref|YP_003427192.1| DNA-binding response regulator [Bacillus pseudofirmus OF4] gi|288546417|gb|ADC50300.1| DNA-binding response regulator [Bacillus pseudofirmus OF4] Length = 233 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 46/226 (20%), Positives = 88/226 (38%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A + +G E + ++ L + Sbjct: 6 ILIVEDEANIARVIELELEHEGYETEIAADGLSALEQIEQGGWSLILLDVML--PRLSGM 63 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R IR + P+I ++ ++ + D G +D V KP E+LAR+ A R Sbjct: 64 EVLRRIRKEGNTTPVIMLTARDTIVDKVMGLDQGANDYVTKPFEIEELLARIRACLRTQL 123 Query: 121 VSNNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 ++ V R+ + L RE +L YL+ + + + + QI Sbjct: 124 STSGTHLDEGELTLADLYVNERTREIKRGETTIELTPREFDLLVYLLRHPEQVMTREQIL 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G FD + NVV+ +I +R+KL + + R +GY + Sbjct: 184 EHVWG-FDYFGDTNVVDVYIRYMRQKLDKPFDAPLIHTVRGVGYVM 228 >gi|259415942|ref|ZP_05739862.1| phosphate regulon transcriptional regulatory protein PhoB [Silicibacter sp. TrichCH4B] gi|259347381|gb|EEW59158.1| phosphate regulon transcriptional regulatory protein PhoB [Silicibacter sp. TrichCH4B] Length = 229 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 47/221 (21%), Positives = 90/221 (40%), Gaps = 4/221 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61 ++++D ++ DG + + E L D+ ++ + G ++ Sbjct: 9 LVVEDELAQREVLAYNLEADGFRVIKAENGEEALLLVEEDMPDIIVLDWMMPNLTGIEIC 68 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + +P+I +S + ++G DD V KP E++ARV RR++ Sbjct: 69 RRLKTRTDTRGIPIIMLSARSEEVDKVRGLETGADDYVVKPYSVIELMARVRTQLRRVRP 128 Query: 122 SNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + I + ++ + L E R+L M G+ ++ Q+ ++G Sbjct: 129 ATVGMRLEFDDIILDAETHKVSRSEQPLKLGPTEFRLLSTFMEKPGRVWSREQLLDRVWG 188 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D V+ V+ HI +LRK L G DPV + R GY++ Sbjct: 189 R-DIYVDTRTVDVHIGRLRKALTQHGGDDPVRTVRGAGYAL 228 >gi|242243834|ref|ZP_04798278.1| hemin DNA-binding response regulator [Staphylococcus epidermidis W23144] gi|242232732|gb|EES35044.1| hemin DNA-binding response regulator [Staphylococcus epidermidis W23144] gi|319401656|gb|EFV89865.1| response regulator [Staphylococcus epidermidis FRI909] Length = 224 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 49/226 (21%), Positives = 95/226 (42%), Gaps = 6/226 (2%) Query: 1 MF--VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE 58 M +++DD + + + + F S E + D++ ++ G Sbjct: 1 MINCLIVDDDEKLLQYVSSHLERESIQTHTFTSGEASLDFLENKNVDIAIVDIM--MSGM 58 Query: 59 KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 EL + ++ +P+I ++ +L F SG DD V KP +E+L R+ A+ RR Sbjct: 59 DGFELCQTLKDDYHIPVIMLTARDALSDKERAFLSGTDDYVTKPFEVKELLFRIKAVLRR 118 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQ-GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 +++ + + + + LP +E ++L L +N + I I Sbjct: 119 YQINADNELQLGNLILNQSYMEITVGSKTMNLPNKEFQLLFLLASNPKHIFTRDDIIEKI 178 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 +G FD ++ V+ HI +LR++L + + R GY +D N Sbjct: 179 WG-FDYEGDDRTVDVHIKRLRQRLSKLKSSVSIQTVRGQGYRVDQN 223 >gi|172038873|ref|YP_001805374.1| two-component response regulator [Cyanothece sp. ATCC 51142] gi|171700327|gb|ACB53308.1| two-component response regulator [Cyanothece sp. ATCC 51142] Length = 252 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 46/232 (19%), Positives = 96/232 (41%), Gaps = 14/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA-------REDVSAIEAFLI 54 ++++D +++D + D+G + N L + + L+ Sbjct: 21 ILVVEDEDVIRDMIVLALEDEGYEITAVNDGRSALNLLQQEDKNSQATETEFDLLVLDLM 80 Query: 55 GKGEKVLELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113 L++ R++ + +P++ +S S + + G DD + KP RE++AR Sbjct: 81 LPQVNGLDICRLLRYQGNIIPILILSAKASETDRVLGLEVGADDYLTKPFSMRELVARCR 140 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQ----GEVFPLPRRERRILEYLMANRGKRVA 169 A+ RR ++N+ + + E + + L +E R+LE M+ + + Sbjct: 141 ALIRRQNLTNSSSSSVKQFRDITLYTQECRVTVGEQEISLSPKEYRLLELFMSYPRRVWS 200 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + Q+ I+G D + V+ HI LR+KL + + + + R GY Sbjct: 201 RDQLIEQIWG-PDFLGDTKTVDVHIRWLREKLEKDPSQPEYLITVRGFGYRF 251 >gi|120611665|ref|YP_971343.1| two component transcriptional regulator [Acidovorax citrulli AAC00-1] gi|120590129|gb|ABM33569.1| two component transcriptional regulator, winged helix family [Acidovorax citrulli AAC00-1] Length = 230 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 43/224 (19%), Positives = 91/224 (40%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D V D +G ++ + L + + ++ L G L Sbjct: 6 ILVVEDDPRVADFLQRGLRAEGYGVQMARTGPEGLALARAGEAALVILDVML--PGMTGL 63 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYR 117 +L + +R QVP++ ++ S++ + G DD + KP E + + R Sbjct: 64 DLCQSLRAEGGQVPVLMLTALSSIEDKVAGLKLGADDYLTKPFAFEELLARIEALLRRGR 123 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + + + + G L +E LE LM+ G+ ++ +I S + Sbjct: 124 EQRPRATTLQVADLVLDLERMQASRAGRPIALTAKELAFLELLMSAPGRLCSRERILSNV 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +G+ + NVV+ ++ +LR K+ + + R LGY +D Sbjct: 184 WGMHE-DPLTNVVDVYVRRLRSKIDEGHPLALLKTVRGLGYRLD 226 >gi|111220170|ref|YP_710964.1| putative two-component system response regulator [Frankia alni ACN14a] gi|111147702|emb|CAJ59359.1| Putative two-component system response regulator (partial match) [Frankia alni ACN14a] Length = 358 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 49/224 (21%), Positives = 95/224 (42%), Gaps = 10/224 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + +G + L R D ++ L LE Sbjct: 22 LVVDDETTLAELLSMALRYEGWEVRSAGDGRGALRLAREFRPDAVVLDIML--PDMDGLE 79 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R +RA S P++ ++ +++ + +G DD V KP E++AR+ + RR Sbjct: 80 VLRRLRAESPDVPVLFLTARDAVEDRVAGLTAGGDDYVTKPFSLEELVARLRGLMRRAAR 139 Query: 122 SNNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + G + + + R+ G L E +L + M N + ++K QI Sbjct: 140 TTEALQGARLVVGDLTMDEESREVARGGVPVHLTATEFELLRFFMRNPRRVLSKAQILDR 199 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +D + NVVE ++S LRKK+ + + + R GY + Sbjct: 200 VW-NYDFGGQANVVELYVSYLRKKI-DAGRPPMIHTMRGAGYVL 241 >gi|94266053|ref|ZP_01289772.1| Response regulator receiver [delta proteobacterium MLMS-1] gi|93453375|gb|EAT03803.1| Response regulator receiver [delta proteobacterium MLMS-1] Length = 240 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 49/229 (21%), Positives = 85/229 (37%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++++D ++ G + + E L D+ ++ L G G +V Sbjct: 13 ILVVEDDENIQQLVGYNLVKAGFQVVYADHGEQALALVFRENPDLVLLDLMLPGLDGGEV 72 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R +P++ ++ D G DD + KP + ++ARV A RR + Sbjct: 73 CKALRRDPRSRHLPIVMLTARGDEDEISAGLDLGADDYITKPFSPKILVARVKAALRRGR 132 Query: 121 VSNNRAETGPIR---------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + V GE L E ILE L G ++ Sbjct: 133 EVAGEEGGAGGVLRLEAAGLVIDPGRYQVLVAGEPVFLTLSEFGILELLARRPGWVFSRQ 192 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 QI A+ G +D A+ V+ + LRKKL G +++ R +GY + Sbjct: 193 QIIDAVRG-YDYAITPRAVDVQVFGLRKKLGAAGG--CIETVRGVGYRL 238 >gi|56750542|ref|YP_171243.1| phosphate sensor two-component response regulator [Synechococcus elongatus PCC 6301] gi|81299821|ref|YP_400029.1| two component transcriptional regulator [Synechococcus elongatus PCC 7942] gi|730805|sp|P39663|SPHR_SYNE7 RecName: Full=Alkaline phosphatase synthesis transcriptional regulatory protein sphR gi|391921|dbj|BAA02453.1| SphR [Synechococcus elongatus PCC 7942] gi|56685501|dbj|BAD78723.1| phosphate sensor two-component response regulator [Synechococcus elongatus PCC 6301] gi|81168702|gb|ABB57042.1| two component transcriptional regulator, winged helix family [Synechococcus elongatus PCC 7942] Length = 257 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 45/234 (19%), Positives = 90/234 (38%), Gaps = 18/234 (7%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS---------AREDVSAIEAF 52 ++++D A+++D + +G +++ S D+ ++ Sbjct: 26 ILVVEDEAVIRDMVALVLQQEGFTVDVAADGRTALNYFRSDSPEAGSVTENPDLVVLDLM 85 Query: 53 LI-GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111 L G L R VP++ +S + + + G DD + KP RE++AR Sbjct: 86 LPAVNGLDFCRLLRR--QGVTVPILMLSAKDTETDRVVGLEIGADDYLTKPFGTRELVAR 143 Query: 112 VAAIYRRLKVSNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167 A+ RR + F + + L +E R+LE M + + Sbjct: 144 CRALLRRSQNQPAETPAVLRYEGLKLFPEECRVLLDDRELTLSPKEFRLLELFMRHPRRV 203 Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++ Q+ I+G+ D + ++ HI LR+K+ N + + R GY + Sbjct: 204 WSRDQLLEKIWGI-DFMGDSKTIDVHIRWLREKIEANPSNPSYLLTVRGFGYRL 256 >gi|283797300|ref|ZP_06346453.1| regulatory protein VanR [Clostridium sp. M62/1] gi|291074970|gb|EFE12334.1| regulatory protein VanR [Clostridium sp. M62/1] gi|295090459|emb|CBK76566.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Clostridium cf. saccharolyticum K10] Length = 234 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 44/232 (18%), Positives = 83/232 (35%), Gaps = 14/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D DG + + + + + ++ G L Sbjct: 6 ILVVDDEKEIADLVEIYLVSDGYRVFKAENAKEGLDILDRENIHLVLLDIM--MPGMDGL 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH----------HREILAR 111 E+ R IR + +P+I +S + + +G DD V KP + + Sbjct: 64 EMCRKIRETNNIPIIMLSARSTDLDKILGLGTGADDYVVKPFNPLELTARVKSQLRRYTQ 123 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + L+ + N + + D V E L E IL L +N G+ + Sbjct: 124 LNPQSSALQGAKNEISIRGLVINKDNHKVTVYDEEIKLTPIEFDILYLLASNPGRVFSTD 183 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 +IF ++ N V HI +LR K++ + + +GY I+ Sbjct: 184 EIFEKVWNEKVYEAN-NTVMVHIRRLRGKMKEDTRQNKIITTVWGVGYKIEK 234 >gi|332711034|ref|ZP_08430969.1| two component transcriptional regulator, winged helix family [Lyngbya majuscula 3L] gi|332350160|gb|EGJ29765.1| two component transcriptional regulator, winged helix family [Lyngbya majuscula 3L] Length = 224 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 48/221 (21%), Positives = 90/221 (40%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G + + D+ ++ L G Sbjct: 5 ILVVEDETKLAQFIELELKYEGYEVSVAYDGLAGLGAARESNPDLVILDWML--PGISGP 62 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +R P+I ++ + + D+G DD V KP E+LARV A RR + Sbjct: 63 EICRRLRTTGNQVPIILLTAKDEVSDRVSGLDAGADDYVVKPFSVEELLARVRAHLRRNQ 122 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEV-FPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + +G+ L +E +LEYL+A+ + + + QI ++G Sbjct: 123 TEDPNILQFADLSLNHSTREVYRGQRLIELTVKEFDLLEYLLAHPRQVLTREQILERVWG 182 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D + N++E +I LR KL V + R +GY + Sbjct: 183 -YDFMGDSNIIEVYIRYLRLKLEANNESRLVQTVRGVGYVL 222 >gi|312142756|ref|YP_003994202.1| two component transcriptional regulator, winged helix family [Halanaerobium sp. 'sapolanicus'] gi|311903407|gb|ADQ13848.1| two component transcriptional regulator, winged helix family [Halanaerobium sp. 'sapolanicus'] Length = 231 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 53/222 (23%), Positives = 95/222 (42%), Gaps = 7/222 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++IDD +++ +G E + + D+ ++ L E E Sbjct: 7 LIIDDDPHIREILDDYLNFEGFDAFLAEDTEKGLKILQEEKVDILILDIML--PDEDGWE 64 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + IR +P+I +S + + G DD + KP RE++AR+ A+ RR + Sbjct: 65 FCQKIRPEYDLPIIFLSAKDKSVDKITGLELGADDYITKPFSPREVVARIKAVLRRYNKA 124 Query: 123 NNRAETGPIRVFSDGRDPE---VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 A+ R+ QGE L +E +L +L N K + ++ A++G Sbjct: 125 AENAKIIKYGELIINREQHLVSFQGEKIELTPKEFSLLWHLAENPKKVFRRERLLKAVWG 184 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +D + V++HI LRKKL +K + V++ +GY D Sbjct: 185 -YDYYGDVRTVDTHIKSLRKKLGDK-AAEAVETVWGVGYKFD 224 >gi|304413082|ref|ZP_07394555.1| Response regulator with a CheY-like receiver domain and a winged-helix DNA-binding domain [Candidatus Regiella insecticola LSR1] gi|304283925|gb|EFL92318.1| Response regulator with a CheY-like receiver domain and a winged-helix DNA-binding domain [Candidatus Regiella insecticola LSR1] Length = 229 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 41/222 (18%), Positives = 90/222 (40%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++++D +++ L +G + + D+ ++ L G G + Sbjct: 5 ILVVEDEVAIREMLCLLLQQNGYQPLAAENYGNAVASLTGLLPDLVLLDWMLPGGSGIQF 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ R +P+I ++ + + + G DD + KP +E++ARV A+ RR+ Sbjct: 65 IQHIRREMLTRSIPVIMLTARGEEEDRVCGLELGADDYITKPFSPKEVVARVRAMIRRIV 124 Query: 121 VSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + + +V + E ++L + MA + + Q+ + ++ Sbjct: 125 PTTTKEIIEIQGLILDPSSHRVIANEQVLAMGPTEFKLLHFFMARPERVYNREQLLNYVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G + VE+ V+ HI +LRK L + + R GY Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKVLEKNGHDKMIQTVRGAGYRF 225 >gi|297567022|ref|YP_003685994.1| winged helix family two component transcriptional regulator [Meiothermus silvanus DSM 9946] gi|296851471|gb|ADH64486.1| two component transcriptional regulator, winged helix family [Meiothermus silvanus DSM 9946] Length = 227 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 47/221 (21%), Positives = 91/221 (41%), Gaps = 5/221 (2%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + ++++D + +G E ++ ++ L Sbjct: 8 LILIVEDEKDIARFIELELQAEGYRTEVAYDGITGLSRFRETNPNLVVLDLML--PVMDG 65 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ R IR S VP++ ++ ++ ++ D+G DD + KP E+LAR+ A RR+ Sbjct: 66 IEVARRIRKTSNVPILILTAKDRVEDKVEGLDAGADDYLVKPFSIEELLARIRAHLRRVT 125 Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + +GR+ G L +E +LE L + GK ++ +I ++ Sbjct: 126 PAITGEIRVADLIINLEGREVYRSGRRIELSNKEFELLELLAKSPGKVFSRFEIEEKVW- 184 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 NVV+ +I LRKKL + + R +GY + Sbjct: 185 -PGYQGGSNVVDVYIGYLRKKLEGIGERRLIHTVRGVGYVL 224 >gi|251794279|ref|YP_003009010.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247541905|gb|ACS98923.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 232 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 41/230 (17%), Positives = 79/230 (34%), Gaps = 12/230 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D ++ + ++ + ++ D+ ++ L Sbjct: 4 ILIIEDDPVIAEVQKDYLLAHSFEVDIAERGDSGLEMELRGEYDLILLDLML--PSMDGY 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI---------HHREILARV 112 E+ R IR S VP++ +S + F G DD + KP Sbjct: 62 EVCRRIREASNVPILIVSAKKEEIDKIRGFGLGADDYILKPFGLGELVARVKAHLSRYER 121 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + IR+ R V +E +L YL+ + + K Sbjct: 122 LVGQGHNGQHRDELRLNGIRIEKQSRRVFVNEREVSFTAKEYDLLFYLVTHPNRVFRKED 181 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 +F I+G+ + V HISKLR+K+ + V++ +GY + Sbjct: 182 LFEQIWGMDAIGSDHATVTVHISKLREKIERDPSKPQYVETIWGVGYRFN 231 >gi|330469914|ref|YP_004407657.1| winged helix family two component transcriptional regulator [Verrucosispora maris AB-18-032] gi|328812885|gb|AEB47057.1| two component transcriptional regulator, winged helix family protein [Verrucosispora maris AB-18-032] Length = 236 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 45/223 (20%), Positives = 94/223 (42%), Gaps = 8/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + A G + S R D+ ++ L Sbjct: 13 LLVVEDDPNILELLSASLRFAGFDVATATSGSAALNAARDHRPDLVVLDVML--PDLDGF 70 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117 E+ R++R + P++ ++ + + G DD V KP E+ AR+ Sbjct: 71 EVIRMMREGGTRTPVVFLTARDATDDKIRGLTLGGDDYVTKPFSLEELTARIRAVLRRTS 130 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + R + + + + G+ L E ++L YLM N + ++K QI + Sbjct: 131 TGEQAPARLTFADLELDEETHEVYRAGQRVQLSPTEFKLLRYLMLNANRVLSKAQILDHV 190 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + +D ++N+VES+IS LR+K+ + + + + R +GY + Sbjct: 191 W-NYDFRGDDNIVESYISYLRRKV-DNVEPRLIHTLRGVGYVL 231 >gi|313617204|gb|EFR89697.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Listeria innocua FSL S4-378] Length = 240 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 47/233 (20%), Positives = 95/233 (40%), Gaps = 16/233 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A + G + L S + D+ ++ L + Sbjct: 8 ILVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLML--PEMDGI 65 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ + +R VP++ ++ + + G DD + KP RE++AR+ AI RR + Sbjct: 66 EVTKKLRQDKVGVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTE 125 Query: 121 VSNNRAETGPIR-----------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 E + D + +Q ++ L +E +L +L +RGK + Sbjct: 126 GKAEVTEEKTEDTEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFS 185 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 + Q+ ++ +D E +V+ H+S LR K+ + + + R GY ++ Sbjct: 186 RDQLLDTVW-NYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKME 237 >gi|311897734|dbj|BAJ30142.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 256 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 40/230 (17%), Positives = 84/230 (36%), Gaps = 17/230 (7%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD ++D + +G + R D+ ++ L Sbjct: 20 LVVDDEPALRDALESSLAFEGYQVATATDGYEALAAVERDRPDLVLLDIM--MPRMDGLT 77 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------------HHREI 108 R +R+ P++ ++ ++ + D G DD + KP + Sbjct: 78 AVRRMRSRGDTVPVLMLTARDAVGDRVTGLDVGADDYLAKPFELDELLARVRALLRRNAL 137 Query: 109 LARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 A AA + +R+ + R+ G L R E +LE +++ + + Sbjct: 138 AAEAAARTAADEDGGEVLSFADLRMNTATREVTRGGHTIELTRTEFMLLEMFLSHPRQVL 197 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + QI A++G FD N ++ ++ LR+K + + R +GY Sbjct: 198 TREQILKAVWG-FDFEPSSNSLDVYVMYLRRKTEQHGMPRIIQTVRGVGY 246 >gi|312128528|ref|YP_003993402.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor hydrothermalis 108] gi|311778547|gb|ADQ08033.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor hydrothermalis 108] Length = 217 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 49/221 (22%), Positives = 98/221 (44%), Gaps = 8/221 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D ++ +G +E + + V ++ L K Sbjct: 3 ILLVEDEEKLRKVIKLYLEKEGFEVEEASDGNEAIEKFQPSMYSVVILDVMLPQK--DGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R IR P+I ++ + F+ G DD V KP+ +EI+ARV AI +R K Sbjct: 61 SVLREIRKKDDTPVIMLTARGEDDDKIFGFELGADDYVVKPVSPKEIVARVKAILKRTKK 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 ++ + + R+ V+G+ L ++E +L YL + +++ I ++++G + Sbjct: 121 PSSNDI---LFIDKAAREVYVKGQKINLTQKEYELLLYLYERQNIALSRELILNSVWG-Y 176 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + + V++HI LR+KL + D + + R GY + Sbjct: 177 EYYGDLRTVDTHIKNLREKLGDL--RDYIKTVRGYGYKFEV 215 >gi|170781102|ref|YP_001709434.1| putative two-component system response regulator [Clavibacter michiganensis subsp. sepedonicus] gi|169155670|emb|CAQ00790.1| putative two-component system response regulator [Clavibacter michiganensis subsp. sepedonicus] Length = 226 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 38/220 (17%), Positives = 87/220 (39%), Gaps = 5/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + +G A+ D+ ++ L G + Sbjct: 5 ILVVDDDTALAEMIGIVLRTEGFEPSFCADGGQALAAFHEAKPDLVLLDLML--PGLDGI 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ +IRA S +P+I ++ + +SG DD + KP + +E++AR+ R Sbjct: 63 QVCDLIRAESGIPIIMLTAKSDTADVVKGLESGADDYIVKPFNPKELVARIRTRLRPAAA 122 Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 ++ V +G + + L E +L L + + + + ++G Sbjct: 123 ASPGLLQVGDLVVDVEGHEVRRGEDRINLTPLEFDLLHALASRPQQVFTREMLLEQVWG- 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVD-SKRFLGYS 219 + + +V H+ +LR K+ + + + R +GY Sbjct: 182 YQYKADTRLVNVHVQRLRAKVEDDPDNPRIVMTVRGVGYR 221 >gi|50955358|ref|YP_062646.1| two-component system, regulatory protein [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951840|gb|AAT89541.1| two-component system, regulatory protein [Leifsonia xyli subsp. xyli str. CTCB07] Length = 233 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 41/222 (18%), Positives = 82/222 (36%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++D G ++ + D+ ++ L Sbjct: 10 ILIVDDEPNIRDLLTTSLRFAGFAVRAVGNGAQAISAVLEEEPDIIVLDVML--PDMNGF 67 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI--HHREILARVAAIYRR 118 + + +R A P++ ++ + + G DD V KP + Sbjct: 68 GVTKRLRGAGYTAPILFLTAKDDTEDKITGLTVGGDDYVTKPFSLDEIVARIKAILRRTM 127 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + G + + D + V L E ++L YLM N + ++K QI ++ Sbjct: 128 QADEDAVIRAGELTMDQDTHEVFVGDTPIELSPTEFKLLRYLMLNPNRVLSKAQILDHVW 187 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D + +VES+IS LR+K+ + +KR GY + Sbjct: 188 -EYDFNGDAGIVESYISYLRRKVDAHSSEALIQTKRGFGYML 228 >gi|257880368|ref|ZP_05660021.1| transcriptional regulator [Enterococcus faecium 1,230,933] gi|257882229|ref|ZP_05661882.1| transcriptional regulator [Enterococcus faecium 1,231,502] gi|257885424|ref|ZP_05665077.1| transcriptional regulator [Enterococcus faecium 1,231,501] gi|257888221|ref|ZP_05667874.1| transcriptional regulator [Enterococcus faecium 1,141,733] gi|257891026|ref|ZP_05670679.1| transcriptional regulator [Enterococcus faecium 1,231,410] gi|257894279|ref|ZP_05673932.1| transcriptional regulator [Enterococcus faecium 1,231,408] gi|257896891|ref|ZP_05676544.1| transcriptional regulator [Enterococcus faecium Com12] gi|260562331|ref|ZP_05832845.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecium C68] gi|261208378|ref|ZP_05923028.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecium TC 6] gi|289566829|ref|ZP_06447239.1| transcriptional regulatory protein yycF [Enterococcus faecium D344SRF] gi|314939997|ref|ZP_07847192.1| response regulator receiver domain protein [Enterococcus faecium TX0133a04] gi|314943532|ref|ZP_07850297.1| response regulator receiver domain protein [Enterococcus faecium TX0133C] gi|314948950|ref|ZP_07852317.1| response regulator receiver domain protein [Enterococcus faecium TX0082] gi|314950769|ref|ZP_07853845.1| response regulator receiver domain protein [Enterococcus faecium TX0133A] gi|314994105|ref|ZP_07859422.1| response regulator receiver domain protein [Enterococcus faecium TX0133B] gi|314998036|ref|ZP_07862928.1| response regulator receiver domain protein [Enterococcus faecium TX0133a01] gi|257814596|gb|EEV43354.1| transcriptional regulator [Enterococcus faecium 1,230,933] gi|257817887|gb|EEV45215.1| transcriptional regulator [Enterococcus faecium 1,231,502] gi|257821280|gb|EEV48410.1| transcriptional regulator [Enterococcus faecium 1,231,501] gi|257824275|gb|EEV51207.1| transcriptional regulator [Enterococcus faecium 1,141,733] gi|257827386|gb|EEV54012.1| transcriptional regulator [Enterococcus faecium 1,231,410] gi|257830658|gb|EEV57265.1| transcriptional regulator [Enterococcus faecium 1,231,408] gi|257833456|gb|EEV59877.1| transcriptional regulator [Enterococcus faecium Com12] gi|260073255|gb|EEW61596.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecium C68] gi|260077439|gb|EEW65158.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecium TC 6] gi|289161360|gb|EFD09250.1| transcriptional regulatory protein yycF [Enterococcus faecium D344SRF] gi|313587966|gb|EFR66811.1| response regulator receiver domain protein [Enterococcus faecium TX0133a01] gi|313591472|gb|EFR70317.1| response regulator receiver domain protein [Enterococcus faecium TX0133B] gi|313597049|gb|EFR75894.1| response regulator receiver domain protein [Enterococcus faecium TX0133A] gi|313597770|gb|EFR76615.1| response regulator receiver domain protein [Enterococcus faecium TX0133C] gi|313640767|gb|EFS05347.1| response regulator receiver domain protein [Enterococcus faecium TX0133a04] gi|313644649|gb|EFS09229.1| response regulator receiver domain protein [Enterococcus faecium TX0082] Length = 244 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 47/227 (20%), Positives = 94/227 (41%), Gaps = 12/227 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + D +G + E + D+ ++ L LE Sbjct: 15 LVVDDEKPISDIVKFNLAKEGYDVYTAYDGEEALEKVAEVEPDLILLDLML--PKMDGLE 72 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +R +P+I ++ S + + G DD V KP +RE++ARV A RR + Sbjct: 73 VAREVRKTYDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRGATA 132 Query: 123 NNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 E + + +GE L RE +L YL + G+ + + + Sbjct: 133 AKEPEEAAPAELTIGDLTIHPEAYMVTKRGETIELTHREFELLFYLAKHLGQVMTREHLL 192 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++G +D + V+ + +LR+K+ + + + ++R +GY + Sbjct: 193 QTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPNYLVTRRGVGYYL 238 >gi|289577696|ref|YP_003476323.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter italicus Ab9] gi|297544009|ref|YP_003676311.1| winged helix family two component transcriptional regulator [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|289527409|gb|ADD01761.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter italicus Ab9] gi|296841784|gb|ADH60300.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 225 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 48/224 (21%), Positives = 90/224 (40%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD + G ++G ++ E D+ ++ L Sbjct: 4 LLIIDDEEMFVKGLKLSLEEEGFEVDTAYDGEEGLDKVRLGNYDLVILDIML--PKLDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYR 117 + R IR S +P+I ++ + + G DD + KP + RE++AR+ Sbjct: 62 SVCREIRTFSNIPIIMLTARGEDVDRIVGIEIGADDYLAKPFNTRELIARIRALLRRATN 121 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + G + + R +G+ L +E IL L +N GK K ++ + Sbjct: 122 PYTKKKDEIKRGELYISIPERAVYKRGKRIELTNKEFEILVLLASNPGKVYTKDKLLDLV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 +G FD + N V H+ KLR+K+ + + +K GY + Sbjct: 182 WG-FDFYGDTNTVTVHVRKLREKIEDDPANPQYIFTKWGAGYYM 224 >gi|238922876|ref|YP_002936389.1| two-component system response regulator [Eubacterium rectale ATCC 33656] gi|238874548|gb|ACR74255.1| two-component system response regulator [Eubacterium rectale ATCC 33656] Length = 229 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 48/227 (21%), Positives = 85/227 (37%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + D G +E N + D+ ++ L G Sbjct: 4 ILIVEDEVAIADLEKDYLELSGFEVEVENDGTSGLARALAEDFDLFILDLML--PGIDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 E+ + IR P++ +S + G DD V KP E++ARV A R + Sbjct: 62 EICKRIREKKNTPILMVSAKKDDIDKIRGLGLGADDYVTKPFSPSELVARVKAHLARYER 121 Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N+ E I++ R V GE +E +L +L N K ++F Sbjct: 122 LIGSATPENDIVEIRGIKIDKTARRVWVNGEEKQFTTKEFDLLTFLAENPNHVFTKEELF 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 I+ + D + V HI K+R+K+ +++ +GY Sbjct: 182 KEIWNM-DSVGDIATVTVHIKKIREKIEMNTAKPQYIETIWGVGYRF 227 >gi|256824251|ref|YP_003148211.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Kytococcus sedentarius DSM 20547] gi|256687644|gb|ACV05446.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Kytococcus sedentarius DSM 20547] Length = 226 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 49/225 (21%), Positives = 92/225 (40%), Gaps = 8/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A D L +G + + D+ ++ L G + Sbjct: 4 ILIVEDEASFSDPLSWLLEREGHEVVVREDGRSGLEEFTRNPADLVLLDVML--PGMSGV 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117 E+ R +R S VP+I ++ S + + G DD V KP R I A + Sbjct: 62 EVCRELRRESSVPIIMLTAKDSEVDKVVGLEIGADDYVTKPYSARELLARINAVLRRRIA 121 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 ++ G + + +D V+GE +P +E +LE LM N G+ + + Q+ + Sbjct: 122 PPAQEDHIVRVGDVELDADSHVVVVRGEPVSMPLKEFELLEMLMRNHGRVLTRAQLIDRV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 +G D + ++ HI ++R K+ + + R LGY + Sbjct: 182 WGA-DYVGDTKTLDVHIKRVRGKVEENPSSPRMITTIRGLGYKFE 225 >gi|114330073|ref|YP_746295.1| two component heavy metal response transcriptional regulator, winged helix family protein [Nitrosomonas eutropha C91] gi|114307087|gb|ABI58330.1| two component heavy metal response transcriptional regulator, winged helix family protein [Nitrosomonas eutropha C91] Length = 231 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 44/225 (19%), Positives = 92/225 (40%), Gaps = 9/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + D + G ++ + D+ ++ L G + Sbjct: 4 LVVEDEKKLADYLRRALTEHGYVVDVAGDGREGLYFAQETPYDLILLDVML--PGMDGFQ 61 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R +R S+VP+I +S ++ + + G DD + KP E++AR+ A+ RR + Sbjct: 62 LLRELRKKSRVPVIMLSARDRVEDRVRGLEDGADDYLPKPFSLTELMARIFALARRNDPA 121 Query: 123 NNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 N I R + L +E +L+ M G+ +++ + Sbjct: 122 NLAEAHTNIVRVADLELDLQRRRVYRNEQPISLTLKEFALLQLFMRKCGQVLSRQTLAEQ 181 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ + + NVVE+ + +LR K+ + + R +GY I+ Sbjct: 182 VWDI-NFNNNTNVVEAAVRRLRAKVDGPFESKLIHTVRGMGYVIE 225 >gi|289208144|ref|YP_003460210.1| PhoB family transcriptional regulator [Thioalkalivibrio sp. K90mix] gi|288943775|gb|ADC71474.1| two component transcriptional regulator PhoB, winged helix family [Thioalkalivibrio sp. K90mix] Length = 229 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 42/222 (18%), Positives = 80/222 (36%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +L++D +++ G ++ + + L D+ ++ L G Sbjct: 5 ILLVEDDTAIREMLQLPLHKAGYAVREAGDVRAAKGLLLEDPPDLILLDWMLPDTSGLDW 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118 + +P+I ++ + + D G DD V KP RE+ + Sbjct: 65 ARTLKASPITKDIPIIMLTARGEEEDRVRGLDVGTDDYVTKPFSPRELVARIKAVLRRTA 124 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 S E +R+ GE + E +L + M ++ + + Q+ ++ Sbjct: 125 PITSEEPVEVEGLRLDPVSHRVSGHGEALSMGPTEYNLLHFFMTHQDRVFTRGQLLDQVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G + VEE V+ HI +LRK L V + R GY Sbjct: 185 GT-NVYVEERTVDVHIRRLRKALALTGHDHLVQTVRGSGYRF 225 >gi|38233005|ref|NP_938772.1| putative two component system response regulator [Corynebacterium diphtheriae NCTC 13129] gi|38199264|emb|CAE48895.1| Putative two component system response regulator [Corynebacterium diphtheriae] Length = 226 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 54/225 (24%), Positives = 97/225 (43%), Gaps = 8/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + D L +G + D+ ++ L G Sbjct: 4 ILLVEDEESLADPLAFLLRKEGFDVVIAGDGPSALVEFDRNAIDIVLLDLML--PGMSGT 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + +RA S VP+I ++ S + + G DD V KP RE++AR+ A+ RR Sbjct: 62 DVCKRLRAVSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLRRGGE 121 Query: 122 SNNRAETG----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + ++ I + + V GE +P +E +LEYLM N G+ + + Q+ + Sbjct: 122 TIEESDEILGSGRIHMDVERHTVTVDGEEISMPLKEFDLLEYLMRNSGRVLTRGQLIDRV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 +G D + ++ HI +LR K+ V + R LGY + Sbjct: 182 WGA-DYVGDTKTLDVHIKRLRSKIEPEPSAPCHVITVRGLGYKYE 225 >gi|304404378|ref|ZP_07386039.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] gi|304346185|gb|EFM12018.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] Length = 243 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 41/230 (17%), Positives = 89/230 (38%), Gaps = 12/230 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + +G ++ ++ L R D+ ++ L L Sbjct: 6 ILVVDDEPEIIELMTLYLQREGYAVYAADNGTDALRLVDEVRPDLIVLDVLLKQ--LNGL 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + IR + VP++ +S + G DD + KP +++ARV A RR + Sbjct: 64 DVCQQIREITAVPVLFVSAKSDDNDIIHGLSVGGDDYMTKPFSPGQLVARVKAHLRRQSL 123 Query: 122 SNNRAETGPIRV--------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + + R V + L +E +L L + + Sbjct: 124 QSEQRDKPVRDQLVFDGLIIDLTARTVRVGDQYVSLSVKEFELLALLATQPNRAFQLANL 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 + A++G+ + + + H+S LRKK+ + + + R +GY + Sbjct: 184 YEAVWGV-NSIGDTRTLMVHMSNLRKKIEPDPTNPRWIVTLRGVGYKFNV 232 >gi|294341311|emb|CAZ89725.1| Transcriptional regulatory protein ompR [Thiomonas sp. 3As] Length = 240 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 42/229 (18%), Positives = 91/229 (39%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++ A +G+ + + E ++ D+ ++ L G+ L Sbjct: 7 ILIVDDDAEIRRLLSAYLQKNGLRVTAVGDGKAMERALLASGVDLIVLDLML--PGDDGL 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R +RA S +P++ ++ + + G DD + KP RE+LAR+ I RR + Sbjct: 65 TLCRNLRAKSDIPILMLTARGEETDRIVGLEMGADDYLPKPFSARELLARIKVILRRARS 124 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPR---------RERRILEYLMANRGKRVAKTQ 172 + R + E R+L +++ + + + Q Sbjct: 125 LPRNLQPEEARQVRFAGWTLDTAHRHLVSPAGVVVALSGAEYRLLRVFLSHPNRVLNRDQ 184 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 + G + + ++ +S+LR++L + + + R GY + Sbjct: 185 LVDLTQGR-EADPLDRSIDVQVSRLRQRLGDDPRDPALIKTVRGAGYVL 232 >gi|269791708|ref|YP_003316612.1| two component transcriptional regulator, winged helix family [Thermanaerovibrio acidaminovorans DSM 6589] gi|269099343|gb|ACZ18330.1| two component transcriptional regulator, winged helix family [Thermanaerovibrio acidaminovorans DSM 6589] Length = 228 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 51/223 (22%), Positives = 93/223 (41%), Gaps = 9/223 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D +++ F G ++ + L +A D+ ++ L Sbjct: 5 ILVVEDEEGIREILSEAFRRQGYTVMCAADGDQAVDLALTAVPDLIILDLML--PKMDGW 62 Query: 62 ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 E+ R IR VP+I ++ + + ++G DD V KP E++ARV A RR Sbjct: 63 EVCRRIREEQELRHVPVIMLTARRDERDAVAGLEAGADDYVRKPFSIPELMARVRAHLRR 122 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFP--LPRRERRILEYLMANRGKRVAKTQIFSA 176 + + +V + P L E R+LE LM+ RG+ V+K +I Sbjct: 123 SDSPQGGEVQISMGNLTLEPQGDVLVDGRPLDLSPTEHRLLEVLMSGRGRLVSKEEILGK 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 I+G + V+ ++ +LR+KL + + R GY Sbjct: 183 IWGHVGS--DSRTVDVNVFRLRRKLEEAGARVTIKTVRGRGYR 223 >gi|229158143|ref|ZP_04286211.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus ATCC 4342] gi|228625305|gb|EEK82064.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus ATCC 4342] Length = 230 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 43/228 (18%), Positives = 91/228 (39%), Gaps = 10/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D +++ +G + + E D+ ++ L Sbjct: 5 ILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIM--MPKLDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115 E+ RIIR S VP++ +S + G DD + KP E+ R + Sbjct: 63 EVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 122 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 Y + + G + + E G+ L +E IL+ + N+ + K QI++ Sbjct: 123 YSATEEIGKVIQIGDLTIDPINFTVEKNGKSLKLTLKEFEILKLFVKNQNRVFTKAQIYT 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 I+ + ++NV+ H+ +LR+K+ + + + + +GY ++ Sbjct: 183 LIWNE-EYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLEV 229 >gi|226357509|ref|YP_002787249.1| response regulator, CheY [Deinococcus deserti VCD115] gi|226319500|gb|ACO47495.1| putative response regulator, CheY [Deinococcus deserti VCD115] Length = 227 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 37/223 (16%), Positives = 82/223 (36%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D V+D + G + ++ R D+ ++ ++ G L Sbjct: 4 ILIVEDNPGVRDMVREYLQEHGYRVRVASNGHEGLLEVRHHRPDLVLLD--MMMPGMDGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119 E R RA P++ ++ + + + G DD V KP E+ R Sbjct: 62 EFLRRFRAAEHAPVVFLTARDAELDKVLGLELGADDYVTKPFSMAELLARVRAHLRRGNE 121 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + G + + + R VQG L R E ++ + G+ ++ ++ Sbjct: 122 APPSAFVRAGELEMDAASRTFLVQGSRVDLTRSEFELMAAFLRAPGRVFSRLELLEQ--L 179 Query: 180 LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 + E ++ H+ LR K+ +++ +GY ++ Sbjct: 180 QEEALGAERTIDVHVRNLRAKIEPEPGKPRFIETVFGMGYRLN 222 >gi|167462051|ref|ZP_02327140.1| two component transcriptional regulator, winged helix family protein [Paenibacillus larvae subsp. larvae BRL-230010] gi|322381463|ref|ZP_08055454.1| two-component response regulator-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154570|gb|EFX46853.1| two-component response regulator-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 225 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 43/221 (19%), Positives = 92/221 (41%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD + + +G + E L D++ ++ + Sbjct: 3 ILIADDDIHIYELIRYYLQKEGFKVLEAKDGEEASALLEQETVDLAIVDVM--MPNKDGY 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120 EL R IR + +P+I ++ + + +G DD + KP +E++ R+ A + R Sbjct: 61 ELCREIRRYYDIPVIMLTAKGEIPDKEKGYQAGTDDYLVKPFEPKELVFRIKALLRRFGL 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 VS++ + + + + + LP +E +L L + + + Q+ S ++G Sbjct: 121 VSSDTIQLNNTVIDRKSYEIRCKDKTLILPLKEFELLSQLASCPDRIFTREQLISLVWGQ 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D + V+ HI +LR++ F + + R LGY ++ Sbjct: 181 -DFTGDARTVDVHIKRLRERFSQTDDF-IITTVRGLGYKLE 219 >gi|126736258|ref|ZP_01752000.1| phosphate regulon transcriptional regulatory protein PhoB [Roseobacter sp. CCS2] gi|126714079|gb|EBA10948.1| phosphate regulon transcriptional regulatory protein PhoB [Roseobacter sp. CCS2] Length = 228 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 46/221 (20%), Positives = 89/221 (40%), Gaps = 4/221 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61 ++++D A ++ +G + + + DV ++ + G +V Sbjct: 8 LIVEDEAAQREVLAYNLEAEGFRVTRAENGDEGLLCVEENAPDVIVLDWMMPNLSGIEVC 67 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 +I +P+I +S + ++G DD V KP E++ARV RR++ Sbjct: 68 RRLKIKPETRSIPIIMLSARSEEVDKVRGLETGADDYVVKPYSVSELMARVRTQLRRVRP 127 Query: 122 SNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + I + ++ L E R+L M G+ ++ + ++G Sbjct: 128 ATVGQVLTYEDIVLDAETYRVTRDDNPLKLGPTEFRLLSTFMEKPGRVWSRDMLLDRVWG 187 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D V+ V+ H+ +LRK L G DPV + R GY++ Sbjct: 188 R-DIYVDTRTVDVHVGRLRKVLTQHGGSDPVRTVRGAGYAL 227 >gi|328956405|ref|YP_004373791.1| two-component response regulator [Carnobacterium sp. 17-4] gi|328672729|gb|AEB28775.1| two-component response regulator [Carnobacterium sp. 17-4] Length = 235 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 46/229 (20%), Positives = 90/229 (39%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + E D+ ++ L + L Sbjct: 4 ILVVDDEKPISDIVKFNLTKEGYEVFTAYDGEEALEKVEEVLPDLIILDLML--PKKDGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R + +P+I ++ S + + G DD V KP +RE+ ARV A RR Sbjct: 62 EVCREVRKNHDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELTARVKANLRRHDN 121 Query: 122 SNNRAETGPIRVF---------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + D +G L RE +L YL + G+ + + Sbjct: 122 AKTPVVEEIETNDIEVGALTIHPDAYIVSKRGATIELTHREFELLHYLAKHLGQVMTREH 181 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + ++G +D + V+ + +LR+K+ + + ++R +GY + Sbjct: 182 LLQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPTWLVTRRGVGYYL 229 >gi|302388283|ref|YP_003824105.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] gi|302198911|gb|ADL06482.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] Length = 229 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 46/227 (20%), Positives = 87/227 (38%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G +E N E + D+ ++ L G Sbjct: 4 ILIVEDEESIAELEKDYLELSGFEVEIENDGEQGLHMALHEDFDLVILDLML--PGVDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 E+ R +R P+I +S + G DD + KP E++ARV A R + Sbjct: 62 EICRKVREVKNTPIIMVSAKKEDIDKIRGLGLGADDYITKPFSPSEMVARVKAHLARYER 121 Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N E +++ R V GE +E ++ +L N K ++F Sbjct: 122 LIGSGVPDNEIIEIRGLKIDKTARRVWVNGEEKNFTTKEFDLVTFLAQNPNHVFTKEELF 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + I+ + + + V HI K+R+K+ N +++ +GY Sbjct: 182 NKIWDM-ESIGDIATVTVHIKKIREKIEFNTAKPQYIETIWGVGYRF 227 >gi|291548048|emb|CBL21156.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus sp. SR1/5] Length = 226 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 36/223 (16%), Positives = 87/223 (39%), Gaps = 6/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + ++ + E + + D++ + ++ Sbjct: 6 ILVVDDESRMRKLVKDFLTKKNFQVLEAGDGEEAMDIFYKEK-DIALLILDVMMPKMDGW 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV--NKPIHHREILARVAAIYRRL 119 E+ R IR +S+VP+I ++ + L F+ GVD+ + Sbjct: 65 EVCREIRKNSKVPIIMLTARGDERDELLGFELGVDEYISKPFSPKILVARVEAILRRTGQ 124 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + G I + V + L +E +L Y + N G +++ +I ++++ Sbjct: 125 SNPDEILSAGGIVIDKAAHQATVDDKPMDLSFKEFELLTYFLENEGIALSREKILNSVW- 183 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D + +++H+ KLR K+ +K + + + +GY + Sbjct: 184 NYDYFGDARTIDTHVKKLRSKMGDKG--EYIKTVWGMGYKFEV 224 >gi|228943430|ref|ZP_04105874.1| DNA-binding response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228976315|ref|ZP_04136786.1| DNA-binding response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228783419|gb|EEM31527.1| DNA-binding response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228816210|gb|EEM62391.1| DNA-binding response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 233 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 46/223 (20%), Positives = 93/223 (41%), Gaps = 6/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD A +++ +DG + + + S D+ ++ Sbjct: 13 ILVADDDANIRELVCLFLRNDGFATAEAADGKEALAVYISKNIDLVVLDIM--MPIMDGW 70 Query: 62 ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L + + RA+ +PL+ ++ + F+ G DD + KP E+ RV A+ +R K Sbjct: 71 TLSKELRRANPDLPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVRALLKRYK 130 Query: 121 VSNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + + + E LP +E +L L G+ + Q+ I+G Sbjct: 131 IGSTQTIHLGNVILDRQTYKVMKGTESLTLPLKEFELLYKLAGTPGQVYTRVQLIDQIWG 190 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + D A ++ V+ HI +LR++ F +++ R LGY ++ Sbjct: 191 I-DYAGDDRTVDVHIKRLRERFATTPDFR-IETVRGLGYRLEV 231 >gi|57865389|ref|YP_189511.1| DNA-binding response regulator [Staphylococcus epidermidis RP62A] gi|251811932|ref|ZP_04826405.1| hemin DNA-binding response regulator [Staphylococcus epidermidis BCM-HMP0060] gi|282875223|ref|ZP_06284096.1| response regulator receiver domain protein [Staphylococcus epidermidis SK135] gi|293367070|ref|ZP_06613742.1| DNA-binding response regulator [Staphylococcus epidermidis M23864:W2(grey)] gi|81673433|sp|Q5HLN2|HSSR_STAEQ RecName: Full=Heme response regulator hssR gi|57636047|gb|AAW52835.1| DNA-binding response regulator [Staphylococcus epidermidis RP62A] gi|251804531|gb|EES57188.1| hemin DNA-binding response regulator [Staphylococcus epidermidis BCM-HMP0060] gi|281295988|gb|EFA88509.1| response regulator receiver domain protein [Staphylococcus epidermidis SK135] gi|291318800|gb|EFE59174.1| DNA-binding response regulator [Staphylococcus epidermidis M23864:W2(grey)] gi|329733807|gb|EGG70131.1| heme response regulator HssR [Staphylococcus epidermidis VCU028] gi|329735102|gb|EGG71398.1| heme response regulator HssR [Staphylococcus epidermidis VCU045] Length = 224 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 49/226 (21%), Positives = 95/226 (42%), Gaps = 6/226 (2%) Query: 1 MF--VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE 58 M +++DD + + + + F S E + D++ ++ G Sbjct: 1 MINCLIVDDDKKLLQYVSSHLERESIQTHTFTSGEASLDFLENKNVDIAIVDIM--MSGM 58 Query: 59 KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 EL + ++ +P+I ++ +L F SG DD V KP +E+L R+ A+ RR Sbjct: 59 DGFELCQTLKDDYHIPVIMLTARDALSDKERAFLSGTDDYVTKPFEVKELLFRIKAVLRR 118 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQ-GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 +++ + + + + LP +E ++L L +N + I I Sbjct: 119 YQINADNELQLGNLILNQSYMEITVGSKTMNLPNKEFQLLFLLASNPKHIFTRDDIIEKI 178 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 +G FD ++ V+ HI +LR++L + + R GY +D N Sbjct: 179 WG-FDYEGDDRTVDVHIKRLRQRLSKLKSSVSIQTVRGQGYRVDQN 223 >gi|300854912|ref|YP_003779896.1| putative transcriptional regulator [Clostridium ljungdahlii DSM 13528] gi|300435027|gb|ADK14794.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM 13528] Length = 227 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 43/222 (19%), Positives = 91/222 (40%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G ++ + D+ ++ L + Sbjct: 6 ILIVEDEVKIARFVELELQHEGYIVDKAVDGRDGLEKALNENFDLIILDVML--PSLNGM 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118 E+ R +R +S+VP+I ++ + + D G DD + KP E + R Sbjct: 64 EVLRRLRQNSEVPVIMLTAKDEIMDKVMGLDIGADDYITKPFAIEELLARIRVTFKHKRV 123 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + E G +++ EV L + E +L+YLM N+ +++ I ++ Sbjct: 124 TPDKSGIIEIGKLKLNVSKYLTTYDDEVVELTKTEFDLLKYLMVNKNIVLSRENILEKVW 183 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G +D + NVV+ +I LR K+ ++ + + R +GY + Sbjct: 184 G-YDYTGDTNVVDVYIRYLRSKIDDRFNHKFIYTVRGVGYQL 224 >gi|228907600|ref|ZP_04071457.1| Two-component response regulator vanR [Bacillus thuringiensis IBL 200] gi|228852092|gb|EEM96889.1| Two-component response regulator vanR [Bacillus thuringiensis IBL 200] Length = 242 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 37/229 (16%), Positives = 84/229 (36%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +G + ++ E + ++ ++ ++ + Sbjct: 16 ILIVDDDQDIVQFIKVNLMQEGFKVFSAHNGEEALEIINNNSIQLAILDIM--MPQMDGI 73 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARVA 113 EL R +R +P++ +S S + F +G DD + KP E Sbjct: 74 ELCRRVREKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 133 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 ++V + + + R + G+ L + E IL + A + + +I Sbjct: 134 FNQNAVQVMEKKINIRGLEIDEVSRTVMLYGDTMNLTKTEYDILYLMAAAKNRVFTIEEI 193 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + +++ N V HI++LR K+ + + +GY I+ Sbjct: 194 YESVWKERAYE-SNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIE 241 >gi|255530281|ref|YP_003090653.1| response regulator receiver [Pedobacter heparinus DSM 2366] gi|255343265|gb|ACU02591.1| response regulator receiver [Pedobacter heparinus DSM 2366] Length = 233 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 40/224 (17%), Positives = 92/224 (41%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++ + +G + E E + + + D+ ++ L G++ Sbjct: 11 ILIVEDDENLRFLVVHRLKAEGYEVSEVGDGEAAERMILAEKPDIVLLDWML--PGKQGA 68 Query: 62 ELPRIIRAHSQVP-LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118 E+ +R +I ++ +D ++ GV D V KP + ++A + + + Sbjct: 69 EVCEEVRKQGFDNLIIMMTAKAQDVDKIDAYNFGVSDYVTKPFNMDVLVAMLDSKVKFIL 128 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + G + + G+ L E RIL Y + N K + + ++ ++ Sbjct: 129 NNDRSEVHRFGNMEHHPNIHTLFRDGKKIELTILENRILLYFLRNPNKVINRDELMLVVW 188 Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 G ++ V ++ HI +LRKK+ N + + R +GY + Sbjct: 189 G-YNSDVNTRTLDMHIVRLRKKIELNPDNPQLLQTVRGVGYRFN 231 >gi|74310968|ref|YP_309387.1| transcriptional regulator PhoB [Shigella sonnei Ss046] gi|73854445|gb|AAZ87152.1| positive response regulator for pho regulon [Shigella sonnei Ss046] Length = 229 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 39/224 (17%), Positives = 93/224 (41%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A +++ + +G + + D+ ++ L G + Sbjct: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDCAVNQLNEPWPDLILLDWML--PGGSGI 62 Query: 62 ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 + + ++ S +P++ ++ + + ++G DD + KP +E++AR+ A+ RR Sbjct: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + E + + E + E ++L + M + + ++ Q+ + Sbjct: 123 ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNH 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + VE+ V+ HI +LRK L V + R GY Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225 >gi|223043432|ref|ZP_03613478.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Staphylococcus capitis SK14] gi|222443221|gb|EEE49320.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Staphylococcus capitis SK14] Length = 233 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 49/224 (21%), Positives = 93/224 (41%), Gaps = 12/224 (5%) Query: 4 LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63 ++DD + D +G + L D+ ++ L G +E+ Sbjct: 7 VVDDEKPIADILEFNLKKEGYEVFCAYDGNDAVDLIYEEEPDIVLLDIML--PGRDGMEV 64 Query: 64 PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123 R +R ++P+I ++ S + + G DD V KP RE++ARV A RR Sbjct: 65 CREVRKKFEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYSQP 124 Query: 124 --------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 N I ++ D + +GE L RE + YL + G+ + + + Sbjct: 125 AQEVSGATNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHLLQ 184 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218 ++G +D + V+ I +LR+K+ + + + ++R +GY Sbjct: 185 TVWG-YDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGY 227 >gi|126702211|gb|ABO26809.1| CpxR [Legionella feeleii] Length = 226 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 48/224 (21%), Positives = 87/224 (38%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D + +G + + E + D ++ L Sbjct: 5 ILIVDDDTELTDLLVQYLEPEGFHVVCVHDGESAVKKALNQAFDAIILDVML--PKLNGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 E+ + IR H Q P++ ++ + + G DD + KP + RE++AR+ ++ Sbjct: 63 EVLKAIREHLQTPVLMLTARGDDIDRIVGLEIGADDYLPKPCNPRELVARLRAILRRTQK 122 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + E I V R E L E ILE L+ + G+ +K ++ Sbjct: 123 IPTQRPIIEHQGILVDCSKRLATHNNEPMDLTNAEFNILEMLIKSPGQAFSKEELTEYAL 182 Query: 179 GLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221 G + ++ HIS LR KL + G V + R GY + Sbjct: 183 GRK-YTAYDRSIDVHISNLRNKLGDNQAGEPLVKTVRGFGYMFN 225 >gi|330988874|gb|EGH86977.1| DNA-binding response regulator BaeS [Pseudomonas syringae pv. lachrymans str. M301315] Length = 227 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 45/221 (20%), Positives = 83/221 (37%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + G S ++ + + ++ L G + Sbjct: 10 ILIVEDEPKLASLMRDYLIAAGYSTHCLSNGLEVVPAVRAQPPQLILLDIML--PGRDGM 67 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R +R+ S VP++ I+ L D G DD + KP RE + R Sbjct: 68 DICRELRSFSAVPIVMITARVEEIDRLLGLDLGADDYICKPFSPRE-MVARVKAILRRTS 126 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 S + ++V G L E R+L + G+ ++ + +Y Sbjct: 127 STDPHTPKGLQVDEAQYQASFNGVSLDLTPVELRLLATFARSPGRVFSRDHLLDRLYSDH 186 Query: 182 DEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221 V + V+SHI LR+KL G DP+ S +GY ++ Sbjct: 187 -RVVTDRTVDSHIRNLRRKLEQACPGQDPIQSLYGVGYKLE 226 >gi|226315263|ref|YP_002775159.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226098213|dbj|BAH46655.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 229 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 43/227 (18%), Positives = 84/227 (37%), Gaps = 10/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + ++G +E D+ ++ L Sbjct: 5 ILIVDDDKEIVELMAIYLSNEGYEIEKAFDGLEAMEKLEQKSIDLVILDVM--MPNLDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILA------RVAAI 115 E+ + IR +S +P++ S + + +G DD V KP + E++A R + Sbjct: 63 EVTKRIRKNSTIPILMASAKTNDMDKILGLMTGADDYVAKPFNPLEVIARVKSLLRRSNY 122 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + K + I +G L E +L L ++ + + +IF Sbjct: 123 TQASKQDHVIEAGPLIIDKQSHFVQTKEGTPIKLTALEFSVLHLLASHPNRVFSSEEIFD 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 + + + V V HIS LR+KL G + + +GY I+ Sbjct: 183 RCWKMENF-VSYKTVMVHISNLREKLEKATNGEKVIQTVWGVGYKIE 228 >gi|124025854|ref|YP_001014970.1| two-component response regulator, phosphate [Prochlorococcus marinus str. NATL1A] gi|112818640|gb|ABI23443.1| two-component response regulator [Prochlorococcus marinus str. NATL1A] gi|123960922|gb|ABM75705.1| two-component response regulator, phosphate [Prochlorococcus marinus str. NATL1A] Length = 245 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 41/233 (17%), Positives = 92/233 (39%), Gaps = 17/233 (7%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQ-----SSAREDVSAIEAFLIGK 56 ++++D +++ +G +E + + E + + D+ ++ L Sbjct: 15 LLIVEDDKSIRETLREALVAEGYQVEVCKTGDEAEARVFSQFDTRKKIDLIVLDLML--P 72 Query: 57 GEKVLELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREI 108 +EL R +R ++ P++ +S S + + G DD + KP R I Sbjct: 73 NLNGIELCRRVRKNNIKTPILIVSAKDSESDRVLGLEVGADDYLIKPFGLNELIARCRAI 132 Query: 109 LARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 L R + + + + I ++ + L +E +I+E + N + Sbjct: 133 LRRSETNHEKTQDLSQVLSYKNISLYRQEYRVTKNSKEINLAPKEYKIMELFLQNPKRVW 192 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220 ++ Q+ I+G+ D + V+ HI +R+K+ + D + + R GY Sbjct: 193 SRDQLLEQIWGI-DYVGDSKTVDVHIRWIREKIEDDASDPDYIRTVRGFGYKF 244 >gi|111022588|ref|YP_705560.1| response regulator (protein-glutamate methylesterase) [Rhodococcus jostii RHA1] gi|110822118|gb|ABG97402.1| response regulator (protein-glutamate methylesterase) [Rhodococcus jostii RHA1] Length = 228 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 49/224 (21%), Positives = 94/224 (41%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V++ +G S+E ++AR D ++ L Sbjct: 3 ILVVDDDRAVRESLRRSLSFNGYSVELAVDGIDALEKVANARPDAIVLDVM--MPRLDGL 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +R+ P++ ++ S+ + D+G DD + KP E+LAR+ A+ RR Sbjct: 61 EVCRRLRSTGDDLPILVLTARDSVSERVSGLDAGADDYLPKPFALEELLARLRALLRRAA 120 Query: 121 VSN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + + R+ L R E +LE LMAN + + + +I Sbjct: 121 PEPGIDSEKMTFEDLTLDPVTREVTRGERSISLTRTEFSLLEMLMANPRRVLTRGRILEE 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G +D N +E ++ LR+K + + R +GY + Sbjct: 181 VWG-YDFPTSGNALEVYVGYLRRKTEADGETRLLHTVRGVGYVL 223 >gi|254788364|ref|YP_003075793.1| phosphate regulon transcriptional regulator PhoB [Teredinibacter turnerae T7901] gi|237687065|gb|ACR14329.1| phosphate regulon transcriptional regulatory protein PhoB [Teredinibacter turnerae T7901] Length = 235 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 43/224 (19%), Positives = 91/224 (40%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++D ++ + + R D+ ++ G + Sbjct: 6 ILVVDDERAIRDMLRVALEMADYAVLEAADAQEAHQIVVDTRPDLILLDWM--MPGVSGI 63 Query: 62 ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IY 116 E R +++ ++P+I ++ + + G DD + KP RE++AR+ A Sbjct: 64 EFARRLKSQEVTREIPIIMLTAKGEEDNKIQGLEIGADDYITKPFSPRELVARLKAVLRR 123 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 S + + + + G L E R+LE+ + ++ + ++ Q+ Sbjct: 124 SDSLSSGDPITVENLCLDPTSHRVTIAGMPVQLGPTEYRLLEFFLTHQERVYSRNQLLDY 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + VEE V+ HI +LRK L+ + V + R GY Sbjct: 184 VWG-GNVYVEERTVDVHIRRLRKALKLENHDRLVQTVRGAGYRF 226 >gi|228917725|ref|ZP_04081266.1| Two-component response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228841962|gb|EEM87068.1| Two-component response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 234 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 43/231 (18%), Positives = 89/231 (38%), Gaps = 12/231 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ ++G + + E L + ++ + Sbjct: 6 IMVVDDEKEIRELIAIYLKNEGYRVLQAENGEEGLELLKKNEVHLIVLDIM--MPKIDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH--------REILARVA 113 + +R +++P+I +S + +G DD V KP + ++ + Sbjct: 64 HMCMKVREIAEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMK 123 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 R + N E G +++ V E L RE ILE L N+G ++ QI Sbjct: 124 MNGRISAQNENEVEIGDMKINVTTHKVTVADEEVKLTPREFAILELLARNKGMVMSAEQI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223 + ++ + +N V HI K+R+K+ V + +GY I+ + Sbjct: 184 YERVW-KEEAFQSDNTVMVHIRKIREKIEENPRKPRYVKTVWGVGYKIEKD 233 >gi|120434488|ref|YP_860186.1| two-component system response regulator [Gramella forsetii KT0803] gi|117576638|emb|CAL65107.1| two-component system response regulator [Gramella forsetii KT0803] Length = 227 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 44/223 (19%), Positives = 91/223 (40%), Gaps = 9/223 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 +L+DD + + +G S+ ++ + + + ++ + G + Sbjct: 8 ILLVDDEPDILEIVGYNLSSEGYSVITADNGADAVKIAKKKKPHLIILDVMMPEMDGIEA 67 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117 E R + + ++ + + FD+G DD + KPI + ++++V YR Sbjct: 68 CEQIRKMPDMEGTIITFLTARGEDYSQMAGFDAGADDYITKPIKPKVLVSKVKALLRRYR 127 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 S+N + G I + + G LPR+E +L L + GK + I + Sbjct: 128 EEDTSSNIVKLGDITINREEYKIVQNGNEMALPRKEFELLSLLASKPGKVFKREDILDNV 187 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G D V ++ HI KLR+K+ + + + + +GY Sbjct: 188 WGN-DIVVGGRTIDVHIRKLREKIGDDK----IKTIKGVGYKF 225 >gi|29829512|ref|NP_824146.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29606620|dbj|BAC70681.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 245 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 47/227 (20%), Positives = 94/227 (41%), Gaps = 15/227 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + D A +G ++ + + D+ ++ L G LE Sbjct: 22 LVVEDDPTIVDAIAARLRAEGFLVQTAGDGPSAVDTAEAWQPDLLILDIML--PGFDGLE 79 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R ++A VP++ ++ L G DD + KP RE+ ARV + RR++ + Sbjct: 80 VCRRVQAQRPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRVERA 139 Query: 123 NNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 A T + R V+ E L E +L L +++ Q+ Sbjct: 140 VVAATTPRTGILRLGELEIDHAQRRVRVRSEDVHLTPTEFDLLVCLANTPRAVLSREQLL 199 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + ++ D + V+SHI LR+K+ G + + + +GY+++ Sbjct: 200 AEVWDWADASG-TRTVDSHIKALRRKI----GAERIRTVHGVGYALE 241 >gi|163938261|ref|YP_001643145.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|229009761|ref|ZP_04166983.1| Two-component response regulator [Bacillus mycoides DSM 2048] gi|229131266|ref|ZP_04260170.1| Two-component response regulator [Bacillus cereus BDRD-ST196] gi|163860458|gb|ABY41517.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] gi|228652204|gb|EEL08137.1| Two-component response regulator [Bacillus cereus BDRD-ST196] gi|228751521|gb|EEM01325.1| Two-component response regulator [Bacillus mycoides DSM 2048] Length = 233 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 45/230 (19%), Positives = 89/230 (38%), Gaps = 11/230 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ ++G + E + + ++ + Sbjct: 6 ILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRILEENEVHLVVLDIM--MPKVDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + +R ++P+I +S + +G DD V KP + E++AR+ + RR Sbjct: 64 HMCMKVREAKEMPIIMLSAKTQDMDKILGLTTGADDYVAKPFNPLELIARIKSQLRRYMK 123 Query: 122 SNNRAETG-------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N A +++ V GE L RE ILE L+ N G + QI+ Sbjct: 124 MNGFAIQNEDELEIGEMKINISTHTVIVDGEEVKLTPREFSILELLVRNPGMVFSAEQIY 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDWN 223 ++ +N V HI K+R+K+ + + +GY I+ + Sbjct: 184 EKVWNERSFQ-SDNTVMVHIRKVREKIEENPRKPIYIKTVWGVGYKIEKD 232 >gi|229135507|ref|ZP_04264293.1| hypothetical protein bcere0014_44010 [Bacillus cereus BDRD-ST196] gi|228647972|gb|EEL04021.1| hypothetical protein bcere0014_44010 [Bacillus cereus BDRD-ST196] Length = 229 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 44/229 (19%), Positives = 88/229 (38%), Gaps = 11/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + + ++ +S E + D+ ++ L Sbjct: 4 ILLVEDEISIAELQRDYLEISDFQVDVEHSGEIGLQMALQEDYDLIILDIML--PKMNGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IRA +P++ +S + G DD + KP E++ARV A R + Sbjct: 62 EICKQIRAIKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121 Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + I + R + E +E +L + + + + + K Q+F Sbjct: 122 LSGNVSKQRDTLYIHGISIDQRARKVFINNEEIAFTTKEFDLLTFFVTHPNQVLNKEQLF 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 I+GL + A + V HI KLR+K+ + +++ GY + Sbjct: 182 ERIWGL-ESAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRFNV 229 >gi|125973909|ref|YP_001037819.1| two component transcriptional regulator [Clostridium thermocellum ATCC 27405] gi|125714134|gb|ABN52626.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum ATCC 27405] Length = 236 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 43/228 (18%), Positives = 95/228 (41%), Gaps = 11/228 (4%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + +++D +++ ++G +E F E + + D+ ++ L G Sbjct: 5 LIYIVEDEKHIQELLRFNLEENGYEVECFEDGETMFEVVERKKPDLFVLDIML--PGVDG 62 Query: 61 LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPI----HHREILARVA 113 E+ + I+ + +P+I ++ + + G DD ++KP + Sbjct: 63 FEICKKIKENYDLKKIPIIMLTAKNDELDRVLGLELGADDYISKPFSVREFVARVKVAFR 122 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + S R G I + + R+ ++ + +E +L+ L+ NRGK +++ + Sbjct: 123 RQADSFENSPKRVNVGRITIDFERREVYKDNQIIEMTFKEFELLKLLIMNRGKVLSRDML 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 I+G FD E V+ HI LR+K+ + +++ R +GY Sbjct: 183 LQKIWG-FDFFGETRTVDVHIRYLRQKIEDDDNNPVYIETVRCIGYRF 229 >gi|329939866|ref|ZP_08289167.1| two-component system response regulator [Streptomyces griseoaurantiacus M045] gi|329301436|gb|EGG45331.1| two-component system response regulator [Streptomyces griseoaurantiacus M045] Length = 220 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 47/223 (21%), Positives = 94/223 (42%), Gaps = 10/223 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G +++ + + D+ ++ L G Sbjct: 3 LLIVEDEKRLALSLAKGLTAEGYAVDVVHDGREGLHRATEGPYDLVILDIML--PGMNGY 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118 + +RA P++ ++ + D+G DD + KP + ++ARV A R Sbjct: 61 RVCAALRAAGHEVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARVKALLRRRA 120 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + G + V + R +G L +E +LE+L+ G+ VAK +I ++ Sbjct: 121 RPGPSPVHVHGGLTVDTAARRVLREGVEVALTAKEFAVLEHLVLRPGEVVAKAEILDHVW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 F + N+VE +IS LR+KL G + + + R GY ++ Sbjct: 181 D-FAYDGDPNIVEVYISALRRKL----GAERIRTVRGAGYRLE 218 >gi|302554102|ref|ZP_07306444.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces viridochromogenes DSM 40736] gi|302471720|gb|EFL34813.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces viridochromogenes DSM 40736] Length = 246 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 46/227 (20%), Positives = 94/227 (41%), Gaps = 15/227 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D A + D +G ++ + + D+ ++ L G LE Sbjct: 23 LVVEDDATIVDAIATRLRAEGFLVQTAGDGPAAVDTAEAWQPDLLILDIML--PGFDGLE 80 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120 + R ++A VP++ ++ L G DD + KP RE+ ARV + RR++ Sbjct: 81 VCRRVQAARPVPVMMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRVERA 140 Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + G + + R V+ E L E +L L +++ Q+ Sbjct: 141 ALAAATPRSGILRLGELEIDHAQRRVRVRSEDVHLTPTEFDLLVCLANTPRAVLSREQLL 200 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + ++ D + V+SHI LR+K+ G + + + +GY+++ Sbjct: 201 AEVWDWADASG-TRTVDSHIKALRRKI----GAERIRTVHGVGYALE 242 >gi|229545685|ref|ZP_04434410.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecalis TX1322] gi|256619196|ref|ZP_05476042.1| transcriptional regulatory protein [Enterococcus faecalis ATCC 4200] gi|256853258|ref|ZP_05558628.1| response regulator [Enterococcus faecalis T8] gi|257422480|ref|ZP_05599470.1| two component system response regulator [Enterococcus faecalis X98] gi|300861021|ref|ZP_07107108.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecalis TUSoD Ef11] gi|307275837|ref|ZP_07556976.1| response regulator receiver domain protein [Enterococcus faecalis TX2134] gi|307291860|ref|ZP_07571731.1| response regulator receiver domain protein [Enterococcus faecalis TX0411] gi|229309135|gb|EEN75122.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecalis TX1322] gi|256598723|gb|EEU17899.1| transcriptional regulatory protein [Enterococcus faecalis ATCC 4200] gi|256711717|gb|EEU26755.1| response regulator [Enterococcus faecalis T8] gi|257164304|gb|EEU94264.1| two component system response regulator [Enterococcus faecalis X98] gi|300850060|gb|EFK77810.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecalis TUSoD Ef11] gi|306497126|gb|EFM66672.1| response regulator receiver domain protein [Enterococcus faecalis TX0411] gi|306507529|gb|EFM76660.1| response regulator receiver domain protein [Enterococcus faecalis TX2134] gi|315029565|gb|EFT41497.1| response regulator receiver domain protein [Enterococcus faecalis TX4000] gi|315032037|gb|EFT43969.1| response regulator receiver domain protein [Enterococcus faecalis TX0017] gi|315156147|gb|EFU00164.1| response regulator receiver domain protein [Enterococcus faecalis TX0043] Length = 236 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 47/230 (20%), Positives = 91/230 (39%), Gaps = 15/230 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + +G + + + L S + D ++ L G LE Sbjct: 5 LVVDDEPSILTLLTFNLEKEGYQVTTSENGKNGFELALSNQYDFIILDVML--PGMDGLE 62 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + +R P++ ++ + + G DD + KP RE+LAR+ AI+RRLK Sbjct: 63 ITKALRREKIDTPILILTAKDEQVDKIIGLEIGADDYLTKPFSPREVLARMKAIFRRLKP 122 Query: 122 SNNRAETGPIRV----------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + + V+ + L +E +L Y M + + + + Sbjct: 123 TTTETLQEDTPKAPLVIGEIRVDEQNYEVFVRNQPIELTPKEFELLVYFMKRKDRVINRE 182 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + I+ +D A + +V+ HIS LR K+ + + + R GY Sbjct: 183 TLLERIW-QYDFAGQSRIVDVHISHLRDKIEPDPKRPVYLVTVRGFGYRF 231 >gi|331656451|ref|ZP_08357413.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli TA206] gi|315299630|gb|EFU58878.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 16-3] gi|331054699|gb|EGI26708.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli TA206] Length = 229 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 39/224 (17%), Positives = 93/224 (41%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A +++ + +G + + D+ ++ L G + Sbjct: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWML--PGGSGI 62 Query: 62 ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 + + ++ S +P++ ++ + + ++G DD + KP +E++AR+ A+ RR Sbjct: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYIIKPFSPKELVARIKAVMRR 122 Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + E + + E + E ++L + M + + ++ Q+ + Sbjct: 123 ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNH 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + VE+ V+ HI +LRK L V + R GY Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225 >gi|88798651|ref|ZP_01114235.1| Two component Transcriptional regulator, Winged helix family protein [Reinekea sp. MED297] gi|88778751|gb|EAR09942.1| Two component Transcriptional regulator, Winged helix family protein [Reinekea sp. MED297] Length = 224 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 48/224 (21%), Positives = 98/224 (43%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + D + + G + + + ++ D+ ++ L + Sbjct: 3 ILVVEDDRTLADYIVRGLTEAGYRADSCTDGKDALYRAAAEDYDLIILDRML--PSVDGM 60 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYR 117 + R +RA + +P++ +S + ++ +G DD + KP E + + Sbjct: 61 TILRTLRASNKTLPVLILSALSDVDQRVEGLSAGADDYLTKPFAFAELLARVQVLLRRPG 120 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + ETG IR+ + VQG RE R+LEYLM + G+ V++T + + Sbjct: 121 ADSRQSTVLETGAIRLDLSRQKVWVQGREIAFQPREFRLLEYLMRHAGQVVSRTMLLENV 180 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + + NVV+ HIS+LR+KL + + + R GY + Sbjct: 181 WD-YHFDPQTNVVDVHISRLRQKLDHGQETSVIRTVRGAGYVFE 223 >gi|229168168|ref|ZP_04295895.1| DNA-binding response regulator [Bacillus cereus AH621] gi|228615263|gb|EEK72361.1| DNA-binding response regulator [Bacillus cereus AH621] Length = 233 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 46/223 (20%), Positives = 93/223 (41%), Gaps = 6/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD A +++ +DG + + + S D+ ++ Sbjct: 13 ILVADDDANIRELVCLFLRNDGFATAEAADGKEALAVYISTNVDLVVLDIM--MPIMDGW 70 Query: 62 ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L + + RA+ +PL+ ++ + F+ G DD + KP E+ RV A+ +R K Sbjct: 71 TLSKELRRANPDLPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVRALLKRYK 130 Query: 121 VSNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + + + E LP +E +L L G+ + Q+ I+G Sbjct: 131 IGSTQTIHLGNVILDRQTYKVMKGTESLTLPLKEFELLYKLAGTPGQVYTRVQLIDQIWG 190 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + D A ++ V+ HI +LR++ F +++ R LGY ++ Sbjct: 191 I-DYAGDDRTVDVHIKRLRERFATTPDFR-IETVRGLGYRLEV 231 >gi|254438411|ref|ZP_05051905.1| phosphate regulon transcriptional regulatory protein PhoB [Octadecabacter antarcticus 307] gi|198253857|gb|EDY78171.1| phosphate regulon transcriptional regulatory protein PhoB [Octadecabacter antarcticus 307] Length = 227 Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 50/221 (22%), Positives = 89/221 (40%), Gaps = 4/221 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVL 61 ++I+D ++ +G + E + DV ++ L G +V Sbjct: 7 LVIEDEPAQREVLSYNLKAEGYRVTVAQDGEQGLLMVEEDAPDVIVLDWMLPHVSGIEVC 66 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + +P+I +S + ++G DD V KP E++ARV RR++ Sbjct: 67 RQLKSRSNTRAIPIIMLSARSEELDKVRGLETGADDYVVKPYAVAELMARVRTQLRRVRP 126 Query: 122 SNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S I + +D L E R+L M G+ +++ Q+ ++G Sbjct: 127 SKVGQVLTFDDIALDADTHRVTRGDVELKLGPTEFRLLATFMEKAGRVLSREQLLDQVWG 186 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D V+ V+ H+ +LRK L G DPV + R GY++ Sbjct: 187 R-DVYVDTRTVDVHVGRLRKVLTQHGGDDPVRTVRGAGYAL 226 >gi|206890620|ref|YP_002248594.1| DNA-binding response regulator [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742558|gb|ACI21615.1| DNA-binding response regulator [Thermodesulfovibrio yellowstonii DSM 11347] Length = 222 Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 45/221 (20%), Positives = 98/221 (44%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + D ++G +++ E ++ + D+ ++ L + Sbjct: 3 ILIVEDEKSLADIIKKGLEEEGYAVDVAYDGEEGLFMAENQPSDLIILDIMLPI--VDGM 60 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R IR + P++ ++ ++ + DSG DD + KP E+LAR+ A+ RR Sbjct: 61 TILRKIRKAGLKTPVLMLTAKDTVMDKVSGLDSGADDYLTKPFSFEELLARIRALLRRRS 120 Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + G+ L +E +LEY+ N+ K +++T++ IY Sbjct: 121 DIKASIIEIDDLVINMATHEVMRGGKQISLSPKEYALLEYMAINKNKVLSRTELIEHIYD 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + NV++ I++LR K+ + G + + R GY + Sbjct: 181 E-NSDFDSNVIDVFINRLRNKIDREFGKKLIHTVRGAGYIL 220 >gi|297192126|ref|ZP_06909524.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|297151222|gb|EDY67354.2| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 257 Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 48/227 (21%), Positives = 95/227 (41%), Gaps = 15/227 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D A + D A +G ++ + + D+ ++ L G LE Sbjct: 34 LVVEDDATIVDAIAARLRAEGFLVQTALDGPAAVDAADAWQPDLMVLDVML--PGFDGLE 91 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R ++A VP++ ++ L G DD + KP RE+ ARV + RR++ + Sbjct: 92 VCRRVQAQRPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRVERA 151 Query: 123 NNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 A T + R V+ E L E +L L +++ Q+ Sbjct: 152 ALAAVTPRSGILRLGELEIDHAQRRVRVRAEDVHLTPTEFDLLVCLANTPRAVLSREQLL 211 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + ++ D + V+SHI LR+K+ G + + + +GY+++ Sbjct: 212 AEVWDWADASG-TRTVDSHIKALRRKI----GAERIRTVHGVGYALE 253 >gi|83589678|ref|YP_429687.1| two component transcriptional regulator [Moorella thermoacetica ATCC 39073] gi|83572592|gb|ABC19144.1| two component transcriptional regulator, winged helix family [Moorella thermoacetica ATCC 39073] Length = 256 Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 40/224 (17%), Positives = 83/224 (37%), Gaps = 9/224 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++ DD A ++ +G+ + + + D+ ++ Sbjct: 36 LVADDEAGLRQLVRLYLEKEGMIVGEAATGRQTLERLHQDKYDLLILDLM--MPDGDGWT 93 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYRR 118 + R +R +P+I ++ L F+ G DD V KP RE++ARV Sbjct: 94 VCREVRREMDLPIIMLTARGEEMDRLLGFELGADDYVTKPFSPRELVARVKALLRRARNE 153 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 G + + L +E +L +L + G+ +++ +I ++ Sbjct: 154 RARGERLQFPGLVIDIPAREVKVDGRTIGNLTPKEFDLLLFLARHPGQVMSREKILEKVW 213 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 G +D + V++HI LR+KL + + +GY + Sbjct: 214 G-YDFYGDLRTVDTHIKNLREKLGR--EHAWIATVWGVGYKFEV 254 >gi|293375785|ref|ZP_06622055.1| putative regulatory protein VanR [Turicibacter sanguinis PC909] gi|325840791|ref|ZP_08167155.1| response regulator receiver domain protein [Turicibacter sp. HGF1] gi|292645562|gb|EFF63602.1| putative regulatory protein VanR [Turicibacter sanguinis PC909] gi|325490161|gb|EGC92498.1| response regulator receiver domain protein [Turicibacter sp. HGF1] Length = 232 Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 37/230 (16%), Positives = 85/230 (36%), Gaps = 13/230 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + A + G + + + + D++ ++ + Sbjct: 6 ILIVEDEKDIALAIEAYLTNQGYKVSIAGNGIEALEIVEATPIDLAIVDVM--MPKMDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH--------HREILARVA 113 +R H P+I +S + + G DD V KP + ++ Sbjct: 64 TFTMKLREHHHFPVIMLSAKSEEVDQIMGLNMGADDYVTKPFRPLELLARVNSQLRRYKR 123 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + S+N G + + ++ ++ V G L E +IL LM + G+ +I Sbjct: 124 FSNLLNEESSNVITIGGLELNTETKEFTVDGNAVKLTPIEYKILNLLMKHPGRVFPTEEI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 + I+ + A+ + + HI +R+K+ N + +GY ++ Sbjct: 184 YERIWN--ETAINTDTIMVHIRNIREKIEINPKNPKYLKVVWGVGYKLEK 231 >gi|227876270|ref|ZP_03994386.1| response regulator [Mobiluncus mulieris ATCC 35243] gi|269977977|ref|ZP_06184930.1| DNA-binding response regulator MtrA [Mobiluncus mulieris 28-1] gi|306819545|ref|ZP_07453252.1| response regulator [Mobiluncus mulieris ATCC 35239] gi|307701179|ref|ZP_07638201.1| DNA-binding response regulator MtrA [Mobiluncus mulieris FB024-16] gi|227843231|gb|EEJ53424.1| response regulator [Mobiluncus mulieris ATCC 35243] gi|269933824|gb|EEZ90405.1| DNA-binding response regulator MtrA [Mobiluncus mulieris 28-1] gi|304647837|gb|EFM45155.1| response regulator [Mobiluncus mulieris ATCC 35239] gi|307613573|gb|EFN92820.1| DNA-binding response regulator MtrA [Mobiluncus mulieris FB024-16] Length = 227 Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 40/221 (18%), Positives = 84/221 (38%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + G + + D+ ++ L G + Sbjct: 5 ILVVDDDTALSEMIGIILESSGYTPSFCADGAKALGEFNRINPDLVLLDLML--PGMDGI 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-ILARVAAIYRRLK 120 E+ R IR S VP+I ++ + ++G DD V KP +E + A + Sbjct: 63 EICRRIRQTSVVPIIMLTAKTDTTDVVAGLEAGADDYVPKPFKPKELLARVAARLRHLET 122 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + + + G L E +L L + G+ +++ ++ ++GL Sbjct: 123 QAEEVLKAADLEINLASHQVTRGGRDLGLTPLEYDLLVALASKPGRVLSREELLEQVWGL 182 Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + +V H+ +LR K+ + V + R +GY I Sbjct: 183 RH-GADTRLVNVHVQRLRAKVEVDPDNPQVVLTVRGVGYRI 222 >gi|260905794|ref|ZP_05914116.1| two component transcriptional regulator [Brevibacterium linens BL2] Length = 227 Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 57/226 (25%), Positives = 98/226 (43%), Gaps = 9/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D D L G +G + + D+ ++ L G Sbjct: 4 ILLVEDEDSFSDPLSYLLGKEGYEVTVADDGLKALAEFDRNGADLVLLDLML--PGVSGT 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R S VP+I ++ S + + G DD V KP RE+LARV A+ RR Sbjct: 62 EVCRELRVKSSVPIIMLTAKDSEIDKVVGLELGADDYVTKPYSSRELLARVRAVLRRNVE 121 Query: 122 SNNRAETGP-----IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 S + +R+ + V+GE +P +E +LE L+ N G+ + + Q+ Sbjct: 122 SEGFDDESVLEAGGVRIDVERHVVSVRGEELSMPLKEFELLEILIRNSGRVMTRGQLIDR 181 Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 I+G D + ++ H+ +LR K+ N + + R LGY + Sbjct: 182 IWGE-DYVGDTKTLDVHVKRLRAKVEQNPSEPRLLTTVRGLGYKFE 226 >gi|326693642|ref|ZP_08230647.1| response regulator [Leuconostoc argentinum KCTC 3773] Length = 229 Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 41/225 (18%), Positives = 91/225 (40%), Gaps = 11/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A + ++ + + L S + D ++ L G + Sbjct: 4 ILVVDDEAAISTLLQYNLEENNYDVTVAEDGQTAYQLASQQQFDAILLDLML--PGMDGM 61 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILA------RVAA 114 + + +R P+I ++ + + G DD + KP RE++A R + Sbjct: 62 TVLKTLRQDKISTPVILVTAKGDEFDRVFGLELGADDYITKPFSPREVIARLKAVLRRSQ 121 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + ++ + + + + + + ++ L RE +L Y G+ + + I Sbjct: 122 VDHQVSEEADIIKIQDLVIDDNKKVVTKADKILTLTPREYELLLYFAQRIGRVIDRETIL 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218 +A++G ++ E +V+ HIS LR+K+ N + + R GY Sbjct: 182 TAVWG-YEYTGESRMVDMHISNLREKIETNPKSPVLLKTVRGFGY 225 >gi|326792833|ref|YP_004310654.1| transcriptional regulator [Clostridium lentocellum DSM 5427] gi|326543597|gb|ADZ85456.1| two component transcriptional regulator, winged helix family [Clostridium lentocellum DSM 5427] Length = 229 Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 45/225 (20%), Positives = 90/225 (40%), Gaps = 11/225 (4%) Query: 4 LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63 +I+D + D DG + E L + D+ ++ L + LE+ Sbjct: 6 IIEDEKAISDIIKYNLEKDGYEVYTAYDGEEGLNLIKTKDLDLVLLDIML--PKKDGLEI 63 Query: 64 PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAAIY 116 + IR +VP+I IS + + G DD V KP RE++ R Sbjct: 64 CKEIRQTKEVPIIIISAKADEIDKVLALELGADDYVTKPFGMREVMARVKARLRRKMTEG 123 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + + + + + + E L RE +L++L +G+ ++ ++ Sbjct: 124 NKAEANEDNLVEDNLCMDLKKYEVSKNNEAIDLTLREFELLKFLWQAKGQVFSREELLEK 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220 ++G ++ + V+ I +LR+K+ + V +KR +GY Sbjct: 184 VWG-YEYYGDVRTVDVTIRRLREKIEDDASKAAYVLTKRGVGYYF 227 >gi|319440749|ref|ZP_07989905.1| two-component system response regulator [Corynebacterium variabile DSM 44702] Length = 240 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 53/233 (22%), Positives = 101/233 (43%), Gaps = 18/233 (7%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR--------EDVSAIEAFLI 54 ++++D + + L +G ++ ++A D+ ++ L Sbjct: 10 LIVEDEESLSEPLAFLLEREGFTVTTAADGPSALDRFAAAESGASPTGPVDIVLLDLML- 68 Query: 55 GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114 G E+ R +R+ S VP+I ++ S + + G DD V KP RE++AR+ A Sbjct: 69 -PGMSGTEVCRQLRSTSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRA 127 Query: 115 IYRRLKVSNNRAETG------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 + RR + N + + + + V GE LP +E +LEYL+ N G+ + Sbjct: 128 VLRRGGEAENAEDATSVISGGRVTMDIERHVVTVAGEEVALPLKEFDLLEYLLRNAGRVL 187 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220 + Q+ I+G D + ++ H+ +LR K+ + + + R LGY Sbjct: 188 TRAQLIDRIWG-SDYVGDTKTLDVHVKRLRGKIEEDPSSPVQLLTVRGLGYKF 239 >gi|302386530|ref|YP_003822352.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] gi|302197158|gb|ADL04729.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] Length = 229 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 48/226 (21%), Positives = 88/226 (38%), Gaps = 10/226 (4%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + +I+D ++D G + F E S + ++ + L G Sbjct: 3 LIYVIEDDDNIRDLIKIALEGFGYEVSAFEMAEDALRHIESDQPALAVFDLML--PGMDG 60 Query: 61 LELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAA 114 L R IR + +P++ ++ + D G DD + KP E + + Sbjct: 61 LTAIRRIRKNESLKDIPILILTAKDREFDKVAGLDGGADDYMTKPFGVMELAARIRSLLR 120 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 R + +N + + R+ G L +E +L+YLM N K V + ++ Sbjct: 121 RSTRDQAESNELNQYCLNLNKKTREVHCDGMKVELTLKEFELLQYLMENHNKVVTRDELL 180 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + I+G +D E ++ HI LR+KL G + + R +GY Sbjct: 181 NHIWG-YDYDGETRTLDMHIRTLRQKLGENGGS-CIKTVRGVGYRF 224 >gi|269128240|ref|YP_003301610.1| winged helix family two component transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268313198|gb|ACY99572.1| two component transcriptional regulator, winged helix family [Thermomonospora curvata DSM 43183] Length = 225 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 45/219 (20%), Positives = 91/219 (41%), Gaps = 5/219 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + + +G + + R D+ ++ L G ++ Sbjct: 6 LVVDDDLALAEMLGIVLRGEGFEPSFVHDGDKALEAFRETRPDLVLLDLML--PGADGID 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IRA S VP++ ++ + +SG DD + KP +E++AR+ A RR + Sbjct: 64 VCRQIRAESGVPIVMLTAKSDTVDVVLGLESGADDYIVKPFKPKELVARMRARLRRTEEP 123 Query: 123 NNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + G I + G + + PL E +L L + + + ++G + Sbjct: 124 APETLQIGDITIDVAGHSVKRGDKTIPLTPLEFDLLVALARKPRQVFTREVLLEQVWG-Y 182 Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219 A + +V H+ +LR K+ + V + R +GY Sbjct: 183 RHAADTRLVNVHVQRLRAKIEKDPEHPEIVVTVRGVGYK 221 >gi|225571191|ref|ZP_03780189.1| hypothetical protein CLOHYLEM_07279 [Clostridium hylemonae DSM 15053] gi|225160022|gb|EEG72641.1| hypothetical protein CLOHYLEM_07279 [Clostridium hylemonae DSM 15053] Length = 229 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 45/229 (19%), Positives = 85/229 (37%), Gaps = 10/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D D + + + S + D++ ++ L Sbjct: 3 ILVVDDEKEIADVIELYLQSDQYDVHKCYTGQEALDYIGSMKIDLAILDIML--PDIDGF 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + IR P+I ++ + G DD + KP + E++ARV A RR Sbjct: 61 QILKQIRGKYTFPVIMLTAKTEYMDKITGLTMGADDYIPKPFNPLELVARVKAQLRRCTQ 120 Query: 122 SNNRAETGPIRVFS-------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N+ + + + L E IL L NRGK ++ ++F Sbjct: 121 YNDGSREEGDIIDFGGLFLNRTSHECVYNEVPLTLTPIEFDILWLLCENRGKVISSEELF 180 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSIDW 222 ++ N V HI LR+K+ G D + + +GY ++ Sbjct: 181 EKVWNEQYYKNSNNTVMVHIRHLREKMSAPTGKSDFIKTVWGVGYKVEE 229 >gi|187928843|ref|YP_001899330.1| winged helix family two component heavy metal response transcriptional regulator [Ralstonia pickettii 12J] gi|187725733|gb|ACD26898.1| two component heavy metal response transcriptional regulator, winged helix family [Ralstonia pickettii 12J] Length = 225 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 45/220 (20%), Positives = 94/220 (42%), Gaps = 4/220 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + + G ++ N+ + DV ++ L G Sbjct: 4 LVVEDEPRTAEYLQKGLSESGFVVDIANNGGDGLHMAEETDYDVIILDVML--PGMDGWT 61 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLKV 121 + + IR+ S+ P++ ++ + + F+ G DD + KP E+LAR+ + Sbjct: 62 VIKSIRSKSETPVLFLTALDDVADRVRGFELGADDYLVKPFAFAELLARIRRCLRQSTSK 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + R + + GR L +E +L LM RG+ +++T I S ++ + Sbjct: 122 ESERLRIADLDIDVLGRRVFRGTTRIELTNQEFSMLHLLMRRRGEVLSRTTIASQVWDV- 180 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + NVV+ I +LR K+ + + + R +GY +D Sbjct: 181 NFDTDTNVVDVAIRRLRSKVDDPFDQKLIHTVRGMGYVLD 220 >gi|322419001|ref|YP_004198224.1| winged helix family two component transcriptional regulator [Geobacter sp. M18] gi|320125388|gb|ADW12948.1| two component transcriptional regulator, winged helix family [Geobacter sp. M18] Length = 226 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 41/224 (18%), Positives = 88/224 (39%), Gaps = 7/224 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61 ++I+D + + +G + A+ D+ ++ L G +V Sbjct: 5 LIIEDETDLAELIAYHLEKEGFRILVAGDGSAGLQEARKAKPDLILLDLMLPGMMGTEVC 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 + + + +P+I ++ + F+ G DD V KP RE++ RV Sbjct: 65 RILKGSDQTASIPIIMLTAKGEEIDRVVGFEVGADDYVVKPFSTRELMLRVRAVLRRSSE 124 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 G + + ++ V GE L E ++L L G+ ++ + ++ Sbjct: 125 QTPKAATITIGELVIDTERHLVSVCGEEVLLTSTEYKLLMNLAERTGRVQSRELLLQNVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 G + + V++H+++LR KL + + + + R GY I+ Sbjct: 185 G-YSYVGDTRTVDTHLTRLRTKLGSAG--ELIKTVRGFGYKIEE 225 >gi|75762247|ref|ZP_00742136.1| Two-component response regulator vanR [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74490270|gb|EAO53597.1| Two-component response regulator vanR [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 247 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 38/229 (16%), Positives = 84/229 (36%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +G + ++ E + ++ ++ ++ + Sbjct: 21 ILIVDDDQDIVQFIKVNLMQEGFKVFSAHNGEEALEIINNNSIQLAILDIM--MPQMDGI 78 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARVA 113 EL R +R +P++ +S S + F +G DD + KP E Sbjct: 79 ELCRRVREKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 138 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 ++V + + + R + GE L + E IL + A + + +I Sbjct: 139 FNQNAVQVMEKKINIRGLEIDEVSRTVMLYGETMNLTKTEYDILYLMAAAKNRVFTIEEI 198 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + +++ N V HI++LR K+ + + +GY I+ Sbjct: 199 YESVWKERAYE-SNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIE 246 >gi|315644524|ref|ZP_07897656.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] gi|315280031|gb|EFU43328.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] Length = 226 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 41/223 (18%), Positives = 101/223 (45%), Gaps = 5/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +++DD +++ + G+ + + + A D+ ++ Sbjct: 4 ILVVDDDPNIRELVKVFLEEAGMEEILEASDGVEALSVMDQASVDLVVMDIM--MPNMDG 61 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL R IR ++ +P++ ++ + + F+ G DD + KP E++ RV A+ +R + Sbjct: 62 WELCREIRRNTGIPVLMLTAKGETRQIVKGFELGTDDYLVKPFEPAELVVRVKALLKRYQ 121 Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 V+ ++ ++ + + ++F LP +E +L L + G + + ++ I+G Sbjct: 122 VAASQTVNVGKLQMNRRTYEVKTADDIFALPLKEFELLFKLGSYPGSTLTRDRLIEDIWG 181 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D E ++ H+++LR++ + + + R LGY ++ Sbjct: 182 -YDFEGNERTLDVHVNRLRERFPEEKYRFRIRTVRGLGYRLEV 223 >gi|282882097|ref|ZP_06290738.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Peptoniphilus lacrimalis 315-B] gi|281298127|gb|EFA90582.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Peptoniphilus lacrimalis 315-B] Length = 229 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 37/224 (16%), Positives = 85/224 (37%), Gaps = 9/224 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D ++ +G ++ S E + S + + ++ L G Sbjct: 5 ILLVEDEEPIRKFVKINLEREGYTVFEAGSGEEGIDIARSKQPQIVVLDIML--PGVDGF 62 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIY 116 + +++R + +I ++ + G DD + KP + I + + Sbjct: 63 AVCKVLRKEFPNLGIIMLTAKAEDYDKIMGLQYGTDDYLTKPFNPTELTLRIKSLERRLE 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 ++ N P ++ R E L E +I++ M N K + + +I Sbjct: 123 PEEEIDENYIIQEPFKLDYYQRKFYKNDEEIELTPTEYQIMKIFMENPKKAMNRDEILKI 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219 ++G D + +V+ +I +LR K+ + +++ LGY Sbjct: 183 VWGN-DFIGDSKIVDVNIRRLRAKIEENPAKPEYIETVWGLGYR 225 >gi|260888658|ref|ZP_05899921.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Selenomonas sputigena ATCC 35185] gi|330839931|ref|YP_004414511.1| two component transcriptional regulator, winged helix family [Selenomonas sputigena ATCC 35185] gi|260861590|gb|EEX76090.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Selenomonas sputigena ATCC 35185] gi|329747695|gb|AEC01052.1| two component transcriptional regulator, winged helix family [Selenomonas sputigena ATCC 35185] Length = 234 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 45/227 (19%), Positives = 87/227 (38%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + + + S+E + + E + D+ ++ L Sbjct: 4 ILIIEDDKAIAELERDYLEANDFSVEIISDGKNGEEKALAEDFDLILLDLML--PSADGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R IR P++ +S + G DD + KP E+ ARV A R + Sbjct: 62 AVCRAIRQKKDTPILMVSARQEEIDKVRGLGLGADDYIVKPFSPNELTARVKAHIARYER 121 Query: 122 SNNRAETGPIRVF-------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + +F + R G+ L RRE +L + N G +K ++F Sbjct: 122 LTQKTVQKSDSIFTGGLEICPEARRVFTDGKEVSLTRREFDLLLFFAENPGIAFSKDKLF 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 I+G+ D + V HI+++R+K+ +++ +GY Sbjct: 182 DRIWGM-DALGDTATVMVHINRIREKIEPNPATPVYIETVWGVGYRF 227 >gi|238753858|ref|ZP_04615218.1| Transcriptional regulatory protein baeR [Yersinia ruckeri ATCC 29473] gi|238707846|gb|EEQ00204.1| Transcriptional regulatory protein baeR [Yersinia ruckeri ATCC 29473] Length = 239 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 44/221 (19%), Positives = 86/221 (38%), Gaps = 5/221 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + + G + + L + + ++ L G + Sbjct: 15 LIVEDEPKLGQLLVDYLQAAGYQTQWLVNGAEVVALVRQSPPAIILLDLML--PGSNGIS 72 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR S VP++ ++ L + G DD + KP RE++ARV I RR Sbjct: 73 ICREIRQFSDVPIVMVTAKTEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCYRP 132 Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + ++ G L E R+L+ L G+ + Q+ + +Y + Sbjct: 133 RDVPTDRAPLQIDESRFHASYHGNTLDLTPAEFRLLKTLAMQPGQVFTREQLLNNLYDDY 192 Query: 182 DEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 V + ++SHI LR+KL + + + +GY + Sbjct: 193 -RVVTDRTIDSHIKNLRRKLESLDEEKAFIRAVYGIGYRWE 232 >gi|156933326|ref|YP_001437242.1| DNA-binding transcriptional regulator BaeR [Cronobacter sakazakii ATCC BAA-894] gi|156531580|gb|ABU76406.1| hypothetical protein ESA_01139 [Cronobacter sakazakii ATCC BAA-894] Length = 240 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 41/224 (18%), Positives = 84/224 (37%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + + N + D+ ++ L G L Sbjct: 13 ILVVEDEPKLGALLVDYLRAASYAPTLINHGDQVLPYVRQTPPDLILLDLML--PGTDGL 70 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118 L R IR S+VP++ ++ L + G DD + KP RE + + + Sbjct: 71 TLCREIRRFSEVPIVMVTARIEEIDRLLGLEIGADDYICKPFSPREVVARVKTILRRCKP 130 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + P+ + + + L E R+L+ L GK ++ Q+ + +Y Sbjct: 131 QRDLQAQDAQSPLIIDEGRFQASWRQKPLDLTPAEFRLLKTLSGEPGKVFSREQLLNHLY 190 Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + V + ++SHI LR+KL + + +GY + Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLEALDDEQPFIRAVYGVGYRWE 233 >gi|329922499|ref|ZP_08278103.1| transcriptional regulatory protein ResD [Paenibacillus sp. HGF5] gi|328942137|gb|EGG38417.1| transcriptional regulatory protein ResD [Paenibacillus sp. HGF5] Length = 235 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 42/230 (18%), Positives = 84/230 (36%), Gaps = 14/230 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD A ++D + + ++ + + L + D+ ++ L Sbjct: 4 ILVIDDEAAIRDLIELVLRRENYVVQTAENGKIALQLLDAFGPDLVVLDLML--PDCSGY 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILAR 111 +L + I VP+I +S + + + G +D + KP +R Sbjct: 62 DLCKEITGKRAVPVIMLSAKNEVIDKVLGLELGAEDYMTKPFDNRELLARIKVILRRNES 121 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 +V + R + + R G L +E +ILE L+ K + Sbjct: 122 KEESSEGTEVKSTRIIHEELTFDLESRRVLKNGVPVSLTAKEFKILETLLKRPDKIFTRD 181 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++ +G +D + V+ I +LRKKL + V + GY + Sbjct: 182 ELLQIGWG-YDFMGDSRSVDMTIMRLRKKLEDNADEPKYVRTIYGFGYQL 230 >gi|302558457|ref|ZP_07310799.1| transcriptional regulatory protein CseB [Streptomyces griseoflavus Tu4000] gi|302476075|gb|EFL39168.1| transcriptional regulatory protein CseB [Streptomyces griseoflavus Tu4000] Length = 246 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 46/227 (20%), Positives = 94/227 (41%), Gaps = 15/227 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D A + D +G ++ + + D+ ++ L G LE Sbjct: 23 LVVEDDATIVDAIATRLRAEGFLVQTAGDGPSAVDTAEAWQPDLLILDIML--PGFDGLE 80 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R ++A +P++ ++ L G DD + KP RE+ ARV + RR++ + Sbjct: 81 VCRRVQAQRPLPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRMERA 140 Query: 123 NNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 A T + R V+ E L E +L L +++ Q+ Sbjct: 141 ALAATTPRSGILRLGELEIDHAQRRVRVRSEDVHLTPTEFDLLVCLANTPRAVLSREQLL 200 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + ++ D + V+SHI LR+K+ G + + + +GY+++ Sbjct: 201 AEVWDWADASG-TRTVDSHIKALRRKI----GAERIRTVHGVGYALE 242 >gi|229019758|ref|ZP_04176562.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus AH1273] gi|229025985|ref|ZP_04182372.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus AH1272] gi|228735316|gb|EEL85924.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus AH1272] gi|228741540|gb|EEL91736.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus AH1273] Length = 241 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 42/228 (18%), Positives = 93/228 (40%), Gaps = 10/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D +++ +G + + E D+ ++ L Sbjct: 16 ILLVEDDISIQEMVETYLVKEGFQVTIASDGEEGVNTYLKGSFDLIILDIM--MPKLDGL 73 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115 E+ RIIR S VP++ +S + G DD + KP E+ R + Sbjct: 74 EVVRIIREKSAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRRSTK 133 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 Y ++ + + G + + E +G L +E IL+ + N+ + K QI++ Sbjct: 134 YSAVESKDEAIQIGDLIIDPINFTVEKKGRQLKLTLKEFEILKLFVKNQNRVFTKAQIYT 193 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 ++ + ++NV+ H+ +LR+K+ + + + + +GY ++ Sbjct: 194 LVWNE-EYYGDDNVINVHMRRLREKIESDPSNPEYIKTLWGIGYKLEV 240 >gi|229076178|ref|ZP_04209146.1| hypothetical protein bcere0024_43750 [Bacillus cereus Rock4-18] gi|229099149|ref|ZP_04230083.1| hypothetical protein bcere0020_43720 [Bacillus cereus Rock3-29] gi|229105297|ref|ZP_04235946.1| hypothetical protein bcere0019_44310 [Bacillus cereus Rock3-28] gi|229118159|ref|ZP_04247518.1| hypothetical protein bcere0017_44280 [Bacillus cereus Rock1-3] gi|228665382|gb|EEL20865.1| hypothetical protein bcere0017_44280 [Bacillus cereus Rock1-3] gi|228678223|gb|EEL32451.1| hypothetical protein bcere0019_44310 [Bacillus cereus Rock3-28] gi|228684377|gb|EEL38321.1| hypothetical protein bcere0020_43720 [Bacillus cereus Rock3-29] gi|228707041|gb|EEL59246.1| hypothetical protein bcere0024_43750 [Bacillus cereus Rock4-18] Length = 229 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 46/229 (20%), Positives = 88/229 (38%), Gaps = 11/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D + + ++ +S E + D+ ++ L Sbjct: 4 ILLIEDEVSIAELQRDYLEISDFQVDVEHSGEIGLQMALQEDYDLIILDIML--PKMNGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IRA +P++ +S + G DD + KP E++ARV A R + Sbjct: 62 EICKQIRAIKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121 Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + I + R + E +E +L + + + + + K Q+F Sbjct: 122 LSGNVSKQRDTLYIHGISIDQRARKVFINNEEIAFTTKEFDLLTFFVTHPNQVLNKEQLF 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 I+GL D A + V HI KLR+K+ + +++ GY + Sbjct: 182 ERIWGL-DSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRFNV 229 >gi|311740874|ref|ZP_07714701.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035] gi|311304394|gb|EFQ80470.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035] Length = 232 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 42/232 (18%), Positives = 90/232 (38%), Gaps = 13/232 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V++ +G + N + ++ ++ L Sbjct: 3 ILVVDDEQAVRESLRRSLRFNGYEVLTANDGLEAVETVRAENPELLILDVM--MPNMDGL 60 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPI--------HHREILARV 112 E+ R +R+ P++ ++ + + D+G DD + KP + Sbjct: 61 EVCRTLRSEGWDRPILVLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLVRRAS 120 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 A ++ + + +D R+ G L R E +L+ LM N K +++++ Sbjct: 121 ADSIAAEAPVESKLSFEDLELDADTREVSRGGRAISLTRTEFALLQLLMENPRKVLSRSK 180 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI-DWN 223 I ++G +D N +E +I LRKK + + + R +GY + + N Sbjct: 181 ILEEVWG-YDFPTSGNALEVYIGYLRKKTEGEGDARLIHTVRGVGYVLRESN 231 >gi|168232366|ref|ZP_02657424.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194471011|ref|ZP_03076995.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|204927311|ref|ZP_03218513.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|238911469|ref|ZP_04655306.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|194457375|gb|EDX46214.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|204323976|gb|EDZ09171.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205333497|gb|EDZ20261.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 229 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 38/224 (16%), Positives = 92/224 (41%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A +++ + +G + + D+ ++ L G L Sbjct: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNKLNEPWPDLILLDWML--PGGSGL 62 Query: 62 ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 + + ++ +P++ ++ + + ++G DD + KP +E++AR+ A+ RR Sbjct: 63 QFIKHLKREALTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + E + + + E ++L + M + + ++ Q+ + Sbjct: 123 ISPMAVEEVIEMQGLSLDPGSHRVMTGDSPLDMGPTEFKLLHFFMTHPERVYSREQLLNH 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + VE+ V+ HI +LRK L + V + R GY Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALEHSGHDRMVQTVRGTGYRF 225 >gi|153813306|ref|ZP_01965974.1| hypothetical protein RUMOBE_03723 [Ruminococcus obeum ATCC 29174] gi|149830596|gb|EDM85687.1| hypothetical protein RUMOBE_03723 [Ruminococcus obeum ATCC 29174] Length = 222 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 52/223 (23%), Positives = 96/223 (43%), Gaps = 6/223 (2%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEK 59 M ++D +++ I G S G + + + D+ ++ L G G Sbjct: 1 MIYCVEDEKNIRELLIYTLETTGFSARGMANSKELKDALKEELPDLILLDIMLPGEDGYS 60 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +LE + +P+I ++ + + ++G DD + KP E +ARV A+ RR Sbjct: 61 ILERLKASSETQNIPVIMVTAKEAEYDKVRGLEAGADDYITKPFGMMEFVARVKAVLRRC 120 Query: 120 KVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + +R+ + E L R+E +L+YLM N+G + + QI + Sbjct: 121 SRQEEDKELKCDDLRLSVGRHKVYWKEEKVELTRKEFELLQYLMENKGLVMTRNQILCHV 180 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G +D E V+ H+ LR+KL +++ R +GY I Sbjct: 181 WG-YDFDGETRTVDVHVRTLRQKLGEAGN--LIETVRGVGYRI 220 >gi|118467592|ref|YP_886240.1| DNA-binding response regulator MtrA [Mycobacterium smegmatis str. MC2 155] gi|118168879|gb|ABK69775.1| DNA-binding response regulator MtrA [Mycobacterium smegmatis str. MC2 155] Length = 228 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 45/220 (20%), Positives = 87/220 (39%), Gaps = 5/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + +G R D+ ++ L G + Sbjct: 8 ILVVDDDPSLAEMLTIVLRGEGFDTAVIGDGSQALTAVRELRPDLVLLDLML--PGMNGI 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R++RA S VP++ ++ + +SG DD V KP +E++ARV A RR + Sbjct: 66 DVCRVLRADSGVPIVMLTAKTDTVDVVLGLESGADDYVMKPFKPKELVARVRARLRRNED 125 Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 G + + QGE L E +L L + + + ++G Sbjct: 126 EPAEMLSIGDVEIDVPAHKVTRQGEQISLTPLEFDLLVALARKPRQVFTRDVLLEQVWG- 184 Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219 + + +V H+ +LR K+ + V + R +GY Sbjct: 185 YRHPADTRLVNVHVQRLRAKVEKDPENPQVVLTVRGVGYK 224 >gi|170691760|ref|ZP_02882924.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia graminis C4D1M] gi|170143044|gb|EDT11208.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia graminis C4D1M] Length = 225 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 47/221 (21%), Positives = 92/221 (41%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + G S++ N L DV ++ L Sbjct: 3 ILIIEDEPKTGAYLKKGLEESGYSVDVANDGADGLLLAQEQDYDVIVLDVML--PTMDGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120 + +++RA P++ ++ + + + G DD + KP E+LARV R Sbjct: 61 AVLKVLRATRTTPVLFLTARDDVSDRVRGLELGGDDYLVKPFAFVELLARVRTLARRGPP 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + G + + + R L RE +L+ L +G+ +++TQI S ++ + Sbjct: 121 RESELLKVGDLEIDVNRRRVRRGNTRIDLTPREFSLLQLLARRQGEVLSRTQIASYVWDM 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + NVVE I +LR K+ + + + R +GY I+ Sbjct: 181 -NFDSDTNVVEVAIRRLRAKIDDDFPVKLIQTVRGVGYVIE 220 >gi|154685042|ref|YP_001420203.1| two-component response regulator [Bacillus amyloliquefaciens FZB42] gi|154350893|gb|ABS72972.1| two-component response regulator [Bacillus amyloliquefaciens FZB42] Length = 228 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 50/227 (22%), Positives = 92/227 (40%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ ++G+ + L D+ ++ + Sbjct: 5 ILIVDDDKDIRNLISVYLENEGIDTQKAEDAAEALKLLEQKEFDLIILDIM--MPNMDGI 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E IR +P+I +S + SG DD + KP + E++ARV + RR K Sbjct: 63 EACMKIREERNLPIIMLSAKSEDMDKIQGLASGADDYLTKPFNPLELIARVKSQLRRYKK 122 Query: 122 SNNRAETGPIRV-------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N + + +D R V+G+ L +E ILE L N+G ++ +I+ Sbjct: 123 YNTDTISTANVIEIGDLTVNTDTRQVWVRGKEVRLTPKEFDILELLSRNKGIVMSVEKIY 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220 A++ D +N V HI+K+R K+ + + GY I Sbjct: 183 EAVW-KEDFFKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGTGYKI 228 >gi|313606643|gb|EFR83406.1| heme response regulator HssR [Listeria monocytogenes FSL F2-208] Length = 222 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 42/223 (18%), Positives = 89/223 (39%), Gaps = 5/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +G + E + + + ++ I+ Sbjct: 1 ILVVDDDRHILKLVGHYLRAEGFRVLEAIDGIEAEKIVETEQVHLAVIDVM--MPNMDGF 58 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119 EL + IRA +P+I ++ +L F+ G DD V KP E++ R+ A+ R Sbjct: 59 ELCQKIRASFPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELVFRIRALLRRSN 118 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + S + G I + ++ + +P +E +L L + G+ + ++ I+ Sbjct: 119 QASEVKINIGNITIDQKSYGIKIGNQERMIPVKEFELLYQLASYPGRIFTREELIERIW- 177 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 D + V+ HI +LR + + + R +GY ++ Sbjct: 178 QRDYDGSDRTVDVHIKRLRDHFDEEKDGIRIVTVRGVGYKLEE 220 >gi|311748341|ref|ZP_07722126.1| DNA-binding response regulator YycF [Algoriphagus sp. PR1] gi|311302774|gb|EAZ81098.2| DNA-binding response regulator YycF [Algoriphagus sp. PR1] Length = 229 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 42/223 (18%), Positives = 90/223 (40%), Gaps = 9/223 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVL 61 +++DD + + +G + + S DV ++ + G G + Sbjct: 10 LVVDDEPDIVEILKYNLQKEGYEVSTAEDGVKAVKVASKFHPDVILLDIMMPGQDGVETC 69 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV---AAIYRR 118 R I +I ++ + + FD G DD + KPI R +++R+ + Sbjct: 70 LQIRQIPELKNAFIIFLTARMEEYSEVAAFDVGADDYITKPIKPRALMSRIAALFRRELK 129 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + + + + + G+ LP++E +L +L N ++ ++ I+ Sbjct: 130 KEQEQVQIKIKDLTIDRGSYTIDKSGKTITLPKKEFELLYFLAKNPNMVFSRDELLQNIW 189 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 G D V V+ HI K+R+K+ + D + + + +GY D Sbjct: 190 GA-DVFVLARTVDVHIRKVREKIGD----DYITTVKGVGYKFD 227 >gi|296132714|ref|YP_003639961.1| two component transcriptional regulator, winged helix family [Thermincola sp. JR] gi|296031292|gb|ADG82060.1| two component transcriptional regulator, winged helix family [Thermincola potens JR] Length = 232 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 34/225 (15%), Positives = 79/225 (35%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD + +G ++ + + + D+ ++ Sbjct: 6 ILIADDEPKILKFLAGFLQREGFAVATAANGFDALAEFNRWQPDLLVLDVM--MPKMDGY 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAIY 116 E+ R IR S VP+I ++ + G DD + KP R Sbjct: 64 EVCRKIREQSNVPIIFLTAKNETFDKIMGLTLGSDDYLTKPFDSAELLLRIRAILRRVAD 123 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + + + + R E +G+ L +E +L L ++ + + Q+ Sbjct: 124 NSSVENKDVIKVPGLVINRATRTVEFEGKEIELTPKEFDLLWLLASHPNQVFTRDQLIYQ 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 I+ + + +V + + +LR+K+ + + + R +GY Sbjct: 184 IWDT-EYCEDTGIVTTLVKRLREKIELDTANPRYIKTIRGVGYKF 227 >gi|196231912|ref|ZP_03130768.1| two component transcriptional regulator, winged helix family [Chthoniobacter flavus Ellin428] gi|196224034|gb|EDY18548.1| two component transcriptional regulator, winged helix family [Chthoniobacter flavus Ellin428] Length = 234 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 41/222 (18%), Positives = 93/222 (41%), Gaps = 7/222 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++ DD V + G ++ + ++ L G +V Sbjct: 10 ILVADDEPDVLQLVSTNLKNAGYNVLKAEDGLSALEQARQTSPALIVLDLMLPEMSGLEV 69 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ + A +++P+I ++ + + G DD + KP RE++ RV ++ RR Sbjct: 70 CKVLKRETATNRIPVIMLTAKAEEVDRIVGLELGADDYMTKPFSPRELVLRVKSVLRRAS 129 Query: 121 VSNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 ++ G I++ + + G+V E ++L L+ RG+ + + + + Sbjct: 130 NGAEVSDRLVLGDIQIDRTRHEVTIGGKVVDFTATEFKLLALLIERRGRVQDRETLLNDV 189 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 +G ++ ++ V++HI +LR+KL +++ R GY Sbjct: 190 WG-YETVIDTRTVDTHIRRLREKLGKSGS--YIETIRGFGYR 228 >gi|326804105|ref|YP_004321923.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Aerococcus urinae ACS-120-V-Col10a] gi|326651015|gb|AEA01198.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Aerococcus urinae ACS-120-V-Col10a] Length = 247 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 45/243 (18%), Positives = 94/243 (38%), Gaps = 26/243 (10%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD ++ +G + + L S D ++ L ++ Sbjct: 5 LVVDDEESIRKLLEYNLSKEGYEVTSSADGKAAYDLASEKNFDFIILDLML--PSMDGMD 62 Query: 63 LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + +R P++ ++ + + G DD + KP RE++AR+ AI RR + Sbjct: 63 VCKQLRQDKVNTPILMLTAKDDELEKIIGLELGADDYMTKPFSPREVVARMKAILRRSRD 122 Query: 122 S---------------------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYL 160 + + G I + G+ + ++E +L YL Sbjct: 123 YGKVASDQEDKKEADQDPAGEEESVIQVGDITINKSDFSVTAHGQAVDMTKKEFELLTYL 182 Query: 161 MANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219 + V++ + S I+ FD +V +V+ HIS LR+K+ + + + + R GY Sbjct: 183 AERVDRIVSREILLSKIWD-FDYSVGSRLVDVHISHLREKIEKDPKNPEYIITVRGFGYK 241 Query: 220 IDW 222 + Sbjct: 242 FEV 244 >gi|26246403|ref|NP_752442.1| transcriptional regulator PhoB [Escherichia coli CFT073] gi|26106801|gb|AAN78986.1|AE016756_169 Phosphate regulon transcriptional Regulatory protein phoB [Escherichia coli CFT073] Length = 229 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 38/224 (16%), Positives = 92/224 (41%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D +++ + +G + + D+ ++ L G + Sbjct: 5 ILVVEDEVPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWML--PGGSGI 62 Query: 62 ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 + + ++ S +P++ ++ + + ++G DD + KP +E++AR+ A+ RR Sbjct: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + E + + E + E ++L + M + + ++ Q+ + Sbjct: 123 ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNH 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + VE+ V+ HI +LRK L V + R GY Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225 >gi|47567077|ref|ZP_00237794.1| two-component response regulator vanRB [Bacillus cereus G9241] gi|47556395|gb|EAL14729.1| two-component response regulator vanRB [Bacillus cereus G9241] Length = 221 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 45/224 (20%), Positives = 99/224 (44%), Gaps = 11/224 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D +++ +++ + L D+ ++ L Sbjct: 4 ILVIEDNPDIQELIREFLMAQNFTVDVVGAGTEGILLFQKNSYDLVLLDVML--PDIDGY 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYR 117 + +I+R S VP+I ++ + ++ + F+ G+DD + KP H+ + RV Sbjct: 62 SICKIMRGQSDVPIIMLTGLHNEESEIKGFELGIDDYITKPFHYTVFIKRVEAVLRRAAT 121 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + + + + S V G L +E I+ L+ NRGK ++++ + + I Sbjct: 122 KEAEAATILQFHELMLNSTAYAAYVHGNQIELTTKEFEIIHTLLQNRGKVLSRSDLLNKI 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +G ++ + V+++HI LRKKL G + + + +GY I+ Sbjct: 182 WG-YEHYGDVRVIDTHIKNLRKKL----GIPYIKTVKGIGYKIE 220 >gi|219849054|ref|YP_002463487.1| winged helix family two component transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219543313|gb|ACL25051.1| two component transcriptional regulator, winged helix family [Chloroflexus aggregans DSM 9485] Length = 247 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 44/226 (19%), Positives = 86/226 (38%), Gaps = 9/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD + + + D+ ++ Sbjct: 23 ILVADDDPSIGRLIQTALPAQQYETVVVANGMEALEAFDRGQFDLVFLDVM--MPFVDGF 80 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + IRA S VP++ I+ + F G D+ + KP E +ARV AI RR+ + Sbjct: 81 DACERIRAKSDVPIVIITARDGTDDIVQGFRRGADEYITKPFRVAEFVARVEAILRRVDM 140 Query: 122 SNNRAETGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 R + + + V+G L E +L +L AN G+ + +F Sbjct: 141 QKARTAPPLVHVGDLVIDATAHKVSVRGAEVKLTPMEFELLYFLAANAGQVFTREVLFRE 200 Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 ++G ++ E N+V+ + +LR+K+ + + R +GY ++ Sbjct: 201 VWG-YEYIGETNLVDVCVRRLREKVEVEPSKPKIIVTVRGVGYKLE 245 >gi|16801789|ref|NP_472057.1| hypothetical protein lin2728 [Listeria innocua Clip11262] gi|16415264|emb|CAC97954.1| lin2728 [Listeria innocua Clip11262] gi|313622297|gb|EFR92796.1| heme response regulator HssR [Listeria innocua FSL J1-023] Length = 225 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 40/223 (17%), Positives = 91/223 (40%), Gaps = 5/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +G + + E + + + ++ I+ Sbjct: 4 ILVVDDDRHILKLVGHYLRAEGFHVLEASDGVEGEKIVETEQVHLAVIDVM--MPNMDGF 61 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119 EL + +R ++ +P+I ++ +L F+ G DD V KP E++ R+ A + R Sbjct: 62 ELCKKLRISYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELIFRIRALLRRSN 121 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + S + G I + ++ + +P +E +L L + G+ + ++ I+ Sbjct: 122 QASEAKITIGNITIDQKSYGIKIGNQERMIPVKEFELLYQLASYPGRIFTREELIERIW- 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 D + V+ HI +LR + + + R +GY ++ Sbjct: 181 QRDYDGSDRTVDVHIKRLRDHFDEEKDGIRIVTVRGVGYKLEE 223 >gi|16804621|ref|NP_466106.1| hypothetical protein lmo2583 [Listeria monocytogenes EGD-e] gi|224503624|ref|ZP_03671931.1| hypothetical protein LmonFR_14158 [Listeria monocytogenes FSL R2-561] gi|16412071|emb|CAD00661.1| lmo2583 [Listeria monocytogenes EGD-e] Length = 225 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 41/223 (18%), Positives = 91/223 (40%), Gaps = 5/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +G + + E + + + ++ I+ Sbjct: 4 ILVVDDDRHILKLVGHYLRAEGFHVLEASDGVEAEKIVETEQVHLAVIDVM--MPNMDGF 61 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119 EL + +RA + +P+I ++ +L F+ G DD V KP E++ R+ A + R Sbjct: 62 ELCQKMRASYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELIFRIRALLRRSN 121 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + S + G I + ++ + +P +E +L L + G+ + ++ I+ Sbjct: 122 QASEVKINIGNITIDQKSYGIKIGNQERMIPVKEFELLYQLASYPGRIFTREELIERIW- 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 D + V+ HI +LR + + + R +GY ++ Sbjct: 181 QRDYDGSDRTVDVHIKRLRDHFDEEKDGIRIVTVRGVGYKLEE 223 >gi|255975713|ref|ZP_05426299.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis T2] gi|256762632|ref|ZP_05503212.1| DNA-binding response regulator [Enterococcus faecalis T3] gi|256959112|ref|ZP_05563283.1| transcriptional regulatory protein [Enterococcus faecalis DS5] gi|256964992|ref|ZP_05569163.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis HIP11704] gi|257079144|ref|ZP_05573505.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis JH1] gi|257082420|ref|ZP_05576781.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis E1Sol] gi|257085052|ref|ZP_05579413.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis Fly1] gi|257090017|ref|ZP_05584378.1| two component system response regulator [Enterococcus faecalis CH188] gi|257416223|ref|ZP_05593217.1| transcriptional regulatory protein [Enterococcus faecalis AR01/DG] gi|294781585|ref|ZP_06746921.1| response regulator receiver domain protein [Enterococcus faecalis PC1.1] gi|307269514|ref|ZP_07550853.1| response regulator receiver domain protein [Enterococcus faecalis TX4248] gi|307273088|ref|ZP_07554334.1| response regulator receiver domain protein [Enterococcus faecalis TX0855] gi|307277931|ref|ZP_07559015.1| response regulator receiver domain protein [Enterococcus faecalis TX0860] gi|307289241|ref|ZP_07569197.1| response regulator receiver domain protein [Enterococcus faecalis TX0109] gi|312901893|ref|ZP_07761158.1| response regulator receiver domain protein [Enterococcus faecalis TX0470] gi|312903451|ref|ZP_07762631.1| response regulator receiver domain protein [Enterococcus faecalis TX0635] gi|255968585|gb|EET99207.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis T2] gi|256683883|gb|EEU23578.1| DNA-binding response regulator [Enterococcus faecalis T3] gi|256949608|gb|EEU66240.1| transcriptional regulatory protein [Enterococcus faecalis DS5] gi|256955488|gb|EEU72120.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis HIP11704] gi|256987174|gb|EEU74476.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis JH1] gi|256990450|gb|EEU77752.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis E1Sol] gi|256993082|gb|EEU80384.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis Fly1] gi|256998829|gb|EEU85349.1| two component system response regulator [Enterococcus faecalis CH188] gi|257158051|gb|EEU88011.1| transcriptional regulatory protein [Enterococcus faecalis ARO1/DG] gi|294451281|gb|EFG19747.1| response regulator receiver domain protein [Enterococcus faecalis PC1.1] gi|306499950|gb|EFM69311.1| response regulator receiver domain protein [Enterococcus faecalis TX0109] gi|306505328|gb|EFM74514.1| response regulator receiver domain protein [Enterococcus faecalis TX0860] gi|306510073|gb|EFM79097.1| response regulator receiver domain protein [Enterococcus faecalis TX0855] gi|306514134|gb|EFM82710.1| response regulator receiver domain protein [Enterococcus faecalis TX4248] gi|310633327|gb|EFQ16610.1| response regulator receiver domain protein [Enterococcus faecalis TX0635] gi|311291086|gb|EFQ69642.1| response regulator receiver domain protein [Enterococcus faecalis TX0470] gi|315037115|gb|EFT49047.1| response regulator receiver domain protein [Enterococcus faecalis TX0027] gi|315150777|gb|EFT94793.1| response regulator receiver domain protein [Enterococcus faecalis TX0012] gi|315163855|gb|EFU07872.1| response regulator receiver domain protein [Enterococcus faecalis TX1302] gi|315169594|gb|EFU13611.1| response regulator receiver domain protein [Enterococcus faecalis TX1342] gi|315172458|gb|EFU16475.1| response regulator receiver domain protein [Enterococcus faecalis TX1346] gi|315577853|gb|EFU90044.1| response regulator receiver domain protein [Enterococcus faecalis TX0630] gi|327535267|gb|AEA94101.1| response regulator [Enterococcus faecalis OG1RF] Length = 236 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 47/230 (20%), Positives = 90/230 (39%), Gaps = 15/230 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + +G + + L S + D ++ L G LE Sbjct: 5 LVVDDEPSILTLLTFNLEKEGYQVTTSEDGKNGFELALSNQYDFIILDVML--PGMDGLE 62 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + +R P++ ++ + + G DD + KP RE+LAR+ AI+RRLK Sbjct: 63 ITKALRREKIDTPILILTAKDEQVDKIIGLEIGADDYLTKPFSPREVLARMKAIFRRLKP 122 Query: 122 SNNRAETGPIRV----------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + + V+ + L +E +L Y M + + + + Sbjct: 123 TTTEPLQEDTPKAPLVIGEIRVDEQNYEVFVRNQPIELTPKEFELLVYFMKRKDRVINRE 182 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + I+ +D A + +V+ HIS LR K+ + + + R GY Sbjct: 183 TLLERIW-QYDFAGQSRIVDVHISHLRDKIEPDPKRPVYLVTVRGFGYRF 231 >gi|254452863|ref|ZP_05066300.1| phosphate regulon transcriptional regulatory protein PhoB [Octadecabacter antarcticus 238] gi|198267269|gb|EDY91539.1| phosphate regulon transcriptional regulatory protein PhoB [Octadecabacter antarcticus 238] Length = 227 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 49/221 (22%), Positives = 92/221 (41%), Gaps = 4/221 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVL 61 ++I+D ++ +G + + E + + DV ++ L G ++ Sbjct: 7 LVIEDEPAQREVLSYNLNAEGYRVTTAENGEQGLLVVAEDAPDVIVLDWMLPHVSGIEIC 66 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + +P+I +S + ++G DD V KP E++ARV RR++ Sbjct: 67 RQLKTRNDTRTIPIIMLSARSEEVDKVRGLETGADDYVVKPYAVAELMARVRTQLRRVRP 126 Query: 122 SNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S G I + +D L E R+L M G+ +++ Q+ ++G Sbjct: 127 SKVGQVLTFGDIELDADTHRVTRSDVELKLGPTEFRLLATFMEKAGRVLSREQLLDRVWG 186 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D V+ V+ H+ +LRK L G DP+ + R GY++ Sbjct: 187 R-DIYVDTRTVDVHVGRLRKVLTQNGGDDPLRTVRGAGYAL 226 >gi|89893823|ref|YP_517310.1| hypothetical protein DSY1077 [Desulfitobacterium hafniense Y51] gi|89333271|dbj|BAE82866.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 228 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 43/226 (19%), Positives = 95/226 (42%), Gaps = 10/226 (4%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + ++++D ++ D+G L S R D+ ++ Sbjct: 5 IILIVEDEPRMQTIIADYLEDEGYQTLAAAHGIEALELFKSKRVDLILLDIM--MPKLDG 62 Query: 61 LELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAI 115 L + R IR S+V +I ++ + L ++ G DD + KP + +I A + Sbjct: 63 LSVCRTIRKQDSRVLIIMLTAKSAENDKLLGYEYGADDYITKPFSLKVLVAKINALLKRA 122 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + E G + + + GE L +E +L L+ N+ + + + + + Sbjct: 123 DAGAQETPEIYEIGRLAINQLSHTVTLAGEPIELTPKEFELLVCLVRNKQRVLTREMMMN 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G ++ + V+SHI +LR+KL+++ + + R GY ++ Sbjct: 183 LVWG-YEYYGDLRNVDSHIKRLRQKLKSEG--RLITTVRGSGYKLE 225 >gi|326790543|ref|YP_004308364.1| transcriptional regulator [Clostridium lentocellum DSM 5427] gi|326541307|gb|ADZ83166.1| two component transcriptional regulator, winged helix family [Clostridium lentocellum DSM 5427] Length = 228 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 48/225 (21%), Positives = 92/225 (40%), Gaps = 8/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D V D +G + + + D+ ++ L + Sbjct: 3 ILVIEDEERVADIMTKYLEKEGYKVFTCYTGRSGLDCFYKNKIDIVLLDLML--PDIQGE 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA----AIYR 117 E+ +R S V + I+ +L + +D FD G D+ + KPI RE++ARV R Sbjct: 61 EICAEMRQVSNVHIFMITAKGTLDSKIDGFDRGADEYLVKPISPREVVARVKALDTRKQR 120 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + G ++F R ++ E L E +L L + G+ ++ Q+ A+ Sbjct: 121 EENKEMLVFDKGHFKIFLQERIVQINNEEITLTPNEFDLLYELASAPGRVFSRDQLIEAV 180 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 G+ D + ++ HI LRKK+ + + + +GY + Sbjct: 181 MGI-DFDGFDRTIDVHIKNLRKKIETDTKNPRYIKTVTGVGYKFE 224 >gi|260596767|ref|YP_003209338.1| transcriptional regulator PhoB [Cronobacter turicensis z3032] gi|260215944|emb|CBA28550.1| Phosphate regulon transcriptional regulatory protein phoB [Cronobacter turicensis z3032] Length = 229 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 38/224 (16%), Positives = 94/224 (41%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A +++ + +G + + D+ ++ L G + Sbjct: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWML--PGGSGI 62 Query: 62 ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 + + I+ ++P++ ++ + + ++G DD + KP +E++AR+ A+ RR Sbjct: 63 QFIKHIKREALTREIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + E + + + E ++L + M + + ++ Q+ + Sbjct: 123 ISPMAVDEVIEMQGLSLDPSSHRVMTGENPLDMGPTEFKLLHFFMTHPERVYSREQLLNH 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + VE+ V+ HI +LRK L + V + R GY Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALEHSGHDRMVQTVRGTGYRF 225 >gi|269926540|ref|YP_003323163.1| two component transcriptional regulator, winged helix family [Thermobaculum terrenum ATCC BAA-798] gi|269790200|gb|ACZ42341.1| two component transcriptional regulator, winged helix family [Thermobaculum terrenum ATCC BAA-798] Length = 233 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 52/222 (23%), Positives = 94/222 (42%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + D G ++ S E D+ ++ L Sbjct: 8 ILVIEDEHQIADLLRRGLTFKGYLVDTAASGEEGLDKARDNPPDLVILDLML--PEMSGE 65 Query: 62 ELPRIIRA--HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRR 118 E+ R +R +P+I ++ + + + D+G DD + KP + E+LAR+ A RR Sbjct: 66 EVCRRLREGLDPDLPIIILTAKDATEDKIAGLDAGADDYITKPFNFEELLARIRASLRRR 125 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + G + + R+ L RE +LE+L N G V+K IF ++ Sbjct: 126 QPQEKSIIRVGDLTLNLASREAMRGERKLDLTTREFDLLEFLARNEGHVVSKEAIFERVW 185 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G + ++ + V+ +IS LR KL D + + R +GY + Sbjct: 186 G-YSFDIDSDAVKVYISYLRSKLTAGGEPDMIHTIRGIGYML 226 >gi|21673488|ref|NP_661553.1| DNA-binding response regulator [Chlorobium tepidum TLS] gi|21646594|gb|AAM71895.1| DNA-binding response regulator [Chlorobium tepidum TLS] Length = 236 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 45/229 (19%), Positives = 94/229 (41%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + G S E ++ ++ L G Sbjct: 6 ILIVEDDRNLAGLLKYNLEKAGYGCIHAASGEEALDELQRHAVNLVLLDIML--PGIDGF 63 Query: 62 ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 E+ R IR S +P++ ++ + F+ G+DD V KP RE+ R+ AI +R Sbjct: 64 EVCRRIRQNVQWSDLPIVMLTAKGEEIDKVFGFELGIDDYVVKPFSPRELNLRIRAILKR 123 Query: 119 LKVSNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + + + + + G L E ++L LM +G+ + + Sbjct: 124 DRRNRSNVQEVLRSGGIELDIGRHEATLDGRPLVLTLMEFKLLALLMKRKGQAQTREVLL 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 S ++ + D+++ +++H+++LR+KL + + + R LGY D N Sbjct: 184 SDVWDV-DKSINTRTIDTHVTRLREKLGDAG--RFIRTVRGLGYKFDEN 229 >gi|323704512|ref|ZP_08116090.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium xylanolyticum LX-11] gi|323535974|gb|EGB25747.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium xylanolyticum LX-11] Length = 231 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 45/230 (19%), Positives = 82/230 (35%), Gaps = 13/230 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD + D G ++ + + D+ ++ Sbjct: 4 ILIIDDEKEIADLLKDSLERKGNTVLTAYNGKEGIEKAKEM-PDLIVLDIM--MPDIDGY 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI--------HHREILARVA 113 E+ R IR P++ +S S + F G DD V KP + Sbjct: 61 EVCRKIRDTVICPIVFLSAKQSEMDRIKGFALGGDDYVVKPFSLKELLARIDAHLRREKR 120 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 AI + I + R+ V+G L ++E +LE L + G+ +K QI Sbjct: 121 AILLNEEKKRALLNFKNITIDLKSREVMVKGNPIGLTKKEFDVLELLSLHPGQVFSKEQI 180 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDW 222 + ++G FD + V HI +R K+ + + + +GY + Sbjct: 181 YEKVWG-FDAEGDTTTVTEHIKNIRAKIGGFDPDTEYIKTVWGIGYKWEK 229 >gi|16759374|ref|NP_454991.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16763777|ref|NP_459392.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29142855|ref|NP_806197.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|62179008|ref|YP_215425.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161615421|ref|YP_001589386.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167551797|ref|ZP_02345550.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167992242|ref|ZP_02573340.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168237507|ref|ZP_02662565.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168240215|ref|ZP_02665147.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168261175|ref|ZP_02683148.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168465482|ref|ZP_02699364.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168818997|ref|ZP_02830997.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194450960|ref|YP_002044430.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194736716|ref|YP_002113428.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197264166|ref|ZP_03164240.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|198244456|ref|YP_002214351.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200390991|ref|ZP_03217602.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|207855879|ref|YP_002242530.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213051513|ref|ZP_03344391.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213417376|ref|ZP_03350518.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213582091|ref|ZP_03363917.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213620466|ref|ZP_03373292.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213647670|ref|ZP_03377723.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213855581|ref|ZP_03383821.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|224582234|ref|YP_002636032.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|289828482|ref|ZP_06546340.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25300971|pir||AD0551 phosphate regulon transcription regulatory protein PhoB STY0432 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16418901|gb|AAL19351.1| response regulator in two-component regulatory system with PhoR (or CreC) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16501665|emb|CAD08852.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Typhi] gi|29138487|gb|AAO70057.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|62126641|gb|AAX64344.1| response regulator in two-component regulatory system with PhoR (or CreC), regulates pho regulon (OmpR family) [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161364785|gb|ABX68553.1| hypothetical protein SPAB_03192 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194409264|gb|ACF69483.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194712218|gb|ACF91439.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195631850|gb|EDX50370.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197242421|gb|EDY25041.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197289486|gb|EDY28849.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197938972|gb|ACH76305.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199603436|gb|EDZ01982.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205323482|gb|EDZ11321.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205329543|gb|EDZ16307.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205340400|gb|EDZ27164.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205344060|gb|EDZ30824.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205349830|gb|EDZ36461.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206707682|emb|CAR31966.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224466761|gb|ACN44591.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261245680|emb|CBG23476.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267992105|gb|ACY86990.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301157009|emb|CBW16492.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312911430|dbj|BAJ35404.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320084671|emb|CBY94462.1| Phosphate regulon transcriptional regulatory protein phoB [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321225121|gb|EFX50182.1| Phosphate regulon transcriptional regulatory protein PhoB SphR [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322614680|gb|EFY11609.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618786|gb|EFY15674.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322623493|gb|EFY20332.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629209|gb|EFY25988.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322631929|gb|EFY28683.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322637333|gb|EFY34035.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322642019|gb|EFY38629.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322646219|gb|EFY42733.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322652515|gb|EFY48869.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322653322|gb|EFY49655.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660529|gb|EFY56765.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664681|gb|EFY60874.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669266|gb|EFY65416.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322670812|gb|EFY66945.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322678950|gb|EFY75005.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681978|gb|EFY78003.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322685193|gb|EFY81190.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322713467|gb|EFZ05038.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323128714|gb|ADX16144.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323194459|gb|EFZ79654.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323197005|gb|EFZ82147.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323203989|gb|EFZ89006.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323206925|gb|EFZ91878.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211059|gb|EFZ95915.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323214547|gb|EFZ99298.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323223104|gb|EGA07447.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323227053|gb|EGA11234.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230129|gb|EGA14249.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233867|gb|EGA17956.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238439|gb|EGA22497.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244127|gb|EGA28136.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323246287|gb|EGA30270.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323251913|gb|EGA35776.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323257910|gb|EGA41589.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323261077|gb|EGA44669.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264993|gb|EGA48492.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323272556|gb|EGA55963.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326622099|gb|EGE28444.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|332987345|gb|AEF06328.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 229 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 38/222 (17%), Positives = 92/222 (41%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D A +++ + +G + + D+ ++ L G G + Sbjct: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNKLNEPWPDLILLDWMLPGGSGLQF 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ + +P++ ++ + + ++G DD + KP +E++AR+ A+ RR+ Sbjct: 65 IKHLKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS 124 Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 E + + + E ++L + M + + ++ Q+ + ++ Sbjct: 125 PMAVEEVIEMQGLSLDPGSHRVMTGDSPLDMGPTEFKLLHFFMTHPERVYSREQLLNHVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G + VE+ V+ HI +LRK L + V + R GY Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALEHSGHDRMVQTVRGTGYRF 225 >gi|219668194|ref|YP_002458629.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219538454|gb|ACL20193.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 227 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 42/225 (18%), Positives = 94/225 (41%), Gaps = 10/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++ D+G L S + D+ ++ L Sbjct: 5 ILIVEDEPRMQTIIADYLEDEGYQTLAAAHGVEALELFKSKQVDLILLDIM--MPKLDGL 62 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIY 116 + R IR S+V +I ++ + L ++ G DD + KP + +I A + Sbjct: 63 SVCRTIRKQDSRVLIIMLTAKSAENDKLLGYEYGADDYITKPFSLKVLVAKINALLKRAD 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + E G + + + GE L +E +L L+ N+ + + + + + Sbjct: 123 AGAQETPELYEVGRLAINQLSHTVTLAGEPIELTPKEFELLVCLVRNKQRVLTREMMMNL 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G ++ + V+SHI +LR+KL+++ + + R GY ++ Sbjct: 183 VWG-YEYYGDLRNVDSHIKRLRQKLKSEG--RLITTVRGSGYKLE 224 >gi|297565541|ref|YP_003684513.1| winged helix family two component transcriptional regulator [Meiothermus silvanus DSM 9946] gi|296849990|gb|ADH63005.1| two component transcriptional regulator, winged helix family [Meiothermus silvanus DSM 9946] Length = 224 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 51/219 (23%), Positives = 90/219 (41%), Gaps = 4/219 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D + GD G ++ A D+ ++ L Sbjct: 4 ILLIEDDPEIAHLLQLELGDAGFEVDWAPGGMSGLVRLREAPPDLVILDLGL--PDLDGG 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR ++VP+I ++ S++ + G DD + KP H E+LAR+ R + Sbjct: 62 EVARRIRVGAEVPIIVLTAADSVERKVTLLSGGADDYIVKPFHPAELLARIQVQLRHREG 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 S G+ L +E +L L GK ++T+I ++G Sbjct: 122 GEQVTIGELEVHLSKR-QVFYDGQEVRLSPKEFELLSLLCTRPGKVFSRTEIEEHLWGRS 180 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + NVV+ H++ LR KLR + + + R +GY++ Sbjct: 181 -LERDSNVVDVHVANLRSKLRESGAYGYLRTVRGVGYAL 218 >gi|167038191|ref|YP_001665769.1| two component transcriptional regulator [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167039100|ref|YP_001662085.1| two component transcriptional regulator [Thermoanaerobacter sp. X514] gi|256750939|ref|ZP_05491823.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus CCSD1] gi|300913310|ref|ZP_07130627.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter sp. X561] gi|307723676|ref|YP_003903427.1| winged helix family two component transcriptional regulator [Thermoanaerobacter sp. X513] gi|320116600|ref|YP_004186759.1| response regulator receiver [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166853340|gb|ABY91749.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter sp. X514] gi|166857025|gb|ABY95433.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256750274|gb|EEU63294.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus CCSD1] gi|300889995|gb|EFK85140.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter sp. X561] gi|307580737|gb|ADN54136.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter sp. X513] gi|319929691|gb|ADV80376.1| response regulator receiver [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 225 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 49/224 (21%), Positives = 88/224 (39%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD + G ++G ++ E D+ ++ L Sbjct: 4 LLIIDDEEMFVKGLKLSLEEEGFEVDAAYDGEEGLDKVRLGNYDLVILDIML--PKLDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYR 117 + R IR S +P+I ++ + + G DD + KP + RE+ AR+ Sbjct: 62 SVCREIRTFSNIPIIMLTARGDDIDKIVGIEIGADDYLAKPFNTRELTARIRALLRRATN 121 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + G + + R +G+ L +E IL L +N GK K ++ I Sbjct: 122 PYTKRKDEIRRGELYINIPERAVYKRGKRIELTNKEFEILVLLASNPGKVYTKDKLLDLI 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 +G FD + N V H+ KLR+K+ + + +K GY + Sbjct: 182 WG-FDFYGDTNTVTVHVRKLREKIEDDPANPQYIFTKWGAGYYM 224 >gi|15832141|ref|NP_310914.1| DNA-binding transcriptional regulator BaeR [Escherichia coli O157:H7 str. Sakai] gi|168750408|ref|ZP_02775430.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str. EC4113] gi|168757981|ref|ZP_02782988.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str. EC4401] gi|168761825|ref|ZP_02786832.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str. EC4501] gi|168769836|ref|ZP_02794843.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str. EC4486] gi|168775469|ref|ZP_02800476.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str. EC4196] gi|168782366|ref|ZP_02807373.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str. EC4076] gi|168788752|ref|ZP_02813759.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str. EC869] gi|168799035|ref|ZP_02824042.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str. EC508] gi|195938273|ref|ZP_03083655.1| DNA-binding transcriptional regulator BaeR [Escherichia coli O157:H7 str. EC4024] gi|208806650|ref|ZP_03248987.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str. EC4206] gi|208817189|ref|ZP_03258281.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str. EC4045] gi|208820121|ref|ZP_03260441.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str. EC4042] gi|209398758|ref|YP_002271322.1| transcriptional regulatory protein baeR [Escherichia coli O157:H7 str. EC4115] gi|217329588|ref|ZP_03445667.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str. TW14588] gi|254793864|ref|YP_003078701.1| DNA-binding transcriptional regulator BaeR [Escherichia coli O157:H7 str. TW14359] gi|261225071|ref|ZP_05939352.1| DNA-binding response regulator in two-component regulatory system with BaeS [Escherichia coli O157:H7 str. FRIK2000] gi|261257583|ref|ZP_05950116.1| DNA-binding response regulator in two-component regulatory system with BaeS [Escherichia coli O157:H7 str. FRIK966] gi|13362356|dbj|BAB36310.1| transcriptional response regulatory protein [Escherichia coli O157:H7 str. Sakai] gi|187768926|gb|EDU32770.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str. EC4196] gi|188015386|gb|EDU53508.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str. EC4113] gi|189000071|gb|EDU69057.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str. EC4076] gi|189355122|gb|EDU73541.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str. EC4401] gi|189361284|gb|EDU79703.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str. EC4486] gi|189367779|gb|EDU86195.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str. EC4501] gi|189371573|gb|EDU89989.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str. EC869] gi|189378506|gb|EDU96922.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str. EC508] gi|208726451|gb|EDZ76052.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str. EC4206] gi|208730808|gb|EDZ79498.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str. EC4045] gi|208740244|gb|EDZ87926.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str. EC4042] gi|209160158|gb|ACI37591.1| transcriptional regulatory protein baeR [Escherichia coli O157:H7 str. EC4115] gi|209747942|gb|ACI72278.1| transcriptional response regulatory protein [Escherichia coli] gi|209747944|gb|ACI72279.1| transcriptional response regulatory protein [Escherichia coli] gi|209747946|gb|ACI72280.1| transcriptional response regulatory protein [Escherichia coli] gi|217317356|gb|EEC25785.1| DNA-binding response regulator BaeR [Escherichia coli O157:H7 str. TW14588] gi|254593264|gb|ACT72625.1| DNA-binding response regulator in two-component regulatory system with BaeS [Escherichia coli O157:H7 str. TW14359] gi|320191754|gb|EFW66402.1| Response regulator BaeR [Escherichia coli O157:H7 str. EC1212] gi|320641378|gb|EFX10833.1| DNA-binding transcriptional regulator BaeR [Escherichia coli O157:H7 str. G5101] gi|320646748|gb|EFX15635.1| DNA-binding transcriptional regulator BaeR [Escherichia coli O157:H- str. 493-89] gi|320652025|gb|EFX20378.1| DNA-binding transcriptional regulator BaeR [Escherichia coli O157:H- str. H 2687] gi|320668107|gb|EFX34986.1| DNA-binding transcriptional regulator BaeR [Escherichia coli O157:H7 str. LSU-61] gi|326338436|gb|EGD62264.1| Response regulator BaeR [Escherichia coli O157:H7 str. 1044] gi|326347041|gb|EGD70774.1| Response regulator BaeR [Escherichia coli O157:H7 str. 1125] Length = 240 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 44/224 (19%), Positives = 89/224 (39%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + I + + + D+ ++ L G L Sbjct: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLSYVRQTPPDLILLDLML--PGTDGL 70 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 L R IR S +P++ ++ L + G DD + KP RE++ARV + Sbjct: 71 TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + P+ + +G++ L E R+L+ L GK ++ Q+ + +Y Sbjct: 131 QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190 Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + V + ++SHI LR+KL + + + +GY + Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 >gi|325263497|ref|ZP_08130231.1| DNA-binding response regulator SrrA [Clostridium sp. D5] gi|324031206|gb|EGB92487.1| DNA-binding response regulator SrrA [Clostridium sp. D5] Length = 226 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 40/223 (17%), Positives = 90/223 (40%), Gaps = 6/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + ++ +G + L + D++ + ++ Sbjct: 6 ILVVDDESRMRKLVKDFLTREGYLVLEAGDGMEAMDLFYEDK-DIALVILDVMMPKMDGW 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV--NKPIHHREILARVAAIYRRL 119 ++ R IR HS+VP+I ++ + L FD GVD+ + + Sbjct: 65 QVCREIREHSKVPIIMLTARSEERDELQGFDLGVDEYISKPFSPKILVARVEAILRRTQS 124 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S + + G I + ++ L +E +L Y + N+G +++ +I + ++ Sbjct: 125 TESGDVMDAGGIMIDRAAHIVKIGERTIDLSYKEFELLSYFVENQGIALSREKILNNVW- 183 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D + +++H+ KLR KL K D + + +GY + Sbjct: 184 NYDYFGDARTIDTHVKKLRSKLGEKG--DYIRTIWGMGYKFEV 224 >gi|183984910|ref|YP_001853201.1| two-component system response phosphate regulon transcriptional regulator, PhoP [Mycobacterium marinum M] gi|183178236|gb|ACC43346.1| two-component system response phosphate regulon transcriptional regulator, PhoP [Mycobacterium marinum M] Length = 240 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 46/225 (20%), Positives = 86/225 (38%), Gaps = 10/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + G + + R D ++ G Sbjct: 16 ILVVDDEDNIVELLSVSLKFQGFEVHTATNGAQALDRARETRPDAVILDVM--MPGMDGF 73 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPI-----HHREILARVAAI 115 + R +RA P + ++ SLQ + G DD V KP R + A Sbjct: 74 GVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAG 133 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + N+R I + + + G+ L E +L Y + N G ++K +I Sbjct: 134 KGSAEPRNSRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILD 193 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +D + NVVES++S LR+K+ + + + R +GY + Sbjct: 194 HVW-RYDFGGDVNVVESYVSYLRRKI-DTGDKRLLHTLRGVGYVL 236 >gi|257867512|ref|ZP_05647165.1| transcriptional regulator [Enterococcus casseliflavus EC30] gi|257873841|ref|ZP_05653494.1| transcriptional regulator [Enterococcus casseliflavus EC10] gi|18460982|gb|AAK53981.1| VanRc-2 [Enterococcus casseliflavus] gi|18476141|gb|AAK58492.1| response regulator VanRc3 [Enterococcus casseliflavus] gi|257801568|gb|EEV30498.1| transcriptional regulator [Enterococcus casseliflavus EC30] gi|257808005|gb|EEV36827.1| transcriptional regulator [Enterococcus casseliflavus EC10] Length = 231 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 50/230 (21%), Positives = 90/230 (39%), Gaps = 12/230 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + ++G +E F DV+ ++ L Sbjct: 5 IIVVDDEKEIAELVTTFLRNEGFQVEPFYDGTSALAYLEKETVDVAVLDVML--PDIDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 +L + IR P++ ++ + G DD V KP + E++ARV RR + Sbjct: 63 QLLQQIRKTHFFPVLMLTAKGEDLDKITGLSLGADDYVTKPFNPLEVVARVKTQLRRYQR 122 Query: 122 SNNRAETGPIRVF--------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 N A I + + + G+ L E +IL YL ++G VA + Sbjct: 123 YNQSANPQKIEEYEKEGLLLKINSHQCFLYGKEVFLTPIEFKILLYLFEHQGSVVASETL 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDW 222 F A++ N V +HI++LR+KL + + +GY I+ Sbjct: 183 FEAVWKEKYLD-NNNTVMAHIARLREKLNEQPRKPKLIKTVWGVGYIIEK 231 >gi|116494441|ref|YP_806175.1| DNA-binding response regulator [Lactobacillus casei ATCC 334] gi|191637826|ref|YP_001986992.1| Putative response regulator [Lactobacillus casei BL23] gi|227535595|ref|ZP_03965644.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239631190|ref|ZP_04674221.1| DNA-binding response regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301065951|ref|YP_003787974.1| OmpR family DNA-binding response regulator [Lactobacillus casei str. Zhang] gi|116104591|gb|ABJ69733.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus casei ATCC 334] gi|190712128|emb|CAQ66134.1| Putative response regulator [Lactobacillus casei BL23] gi|227186725|gb|EEI66792.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239525655|gb|EEQ64656.1| DNA-binding response regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300438358|gb|ADK18124.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus casei str. Zhang] gi|327381892|gb|AEA53368.1| VicR protein [Lactobacillus casei LC2W] gi|327385053|gb|AEA56527.1| VicR protein [Lactobacillus casei BD-II] Length = 235 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 40/231 (17%), Positives = 87/231 (37%), Gaps = 14/231 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + +E + + D ++ L L Sbjct: 4 ILIVDDEPAILTLLQYNLEAEHYQVETATDGQEALDKVRNEPFDFIILDLML--PSLSGL 61 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR---------EILAR 111 ++ R IR P++ ++ + + + G DD V KP R E ++ Sbjct: 62 DVTRKIREDKIQTPIMILTAKDNETDKIVGLELGADDYVTKPFSPREIIARIKAIERRSQ 121 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + ++++ G I + + G+ L +E +L Y GK +++ Sbjct: 122 SQPQTSQKPGNSDQITVGQIAIDPENYKASKGGKRLQLTPKEFELLVYFAQRVGKTLSRD 181 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 + + ++G FD E +V+ +S LR K+ + D + + R GY ++ Sbjct: 182 ALLNGVWG-FDYPAETRMVDIQVSHLRDKIETDPKHPDYLKTVRGFGYQME 231 >gi|312792501|ref|YP_004025424.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor kristjanssonii 177R1B] gi|312179641|gb|ADQ39811.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor kristjanssonii 177R1B] Length = 217 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 52/221 (23%), Positives = 99/221 (44%), Gaps = 8/221 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D ++ +G +E + + V ++ L K Sbjct: 3 ILLIEDEEKLRKIIKLYLEKEGFEVEEVSDGNEAIEKFQPSMYSVVILDVMLPQK--DGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R IR P+I ++ + F+ G DD V KP+ +EI+ARV AI +R K Sbjct: 61 SVLREIRKKDDTPVIMLTARGEDDDKIFGFELGADDYVVKPVSPKEIVARVKAILKRTKK 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 N+ + + R+ V+G+ L ++E +L YL + +++ QI ++++G + Sbjct: 121 PNSNDI---LFIDKAAREVYVKGQKINLTQKEYELLLYLYERQNIALSREQILNSVWG-Y 176 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + + V++HI LR+KL + D + + R GY + Sbjct: 177 EYYGDLRTVDTHIKNLREKLGDL--RDYIKTVRGYGYKFEV 215 >gi|299541675|ref|ZP_07052005.1| DNA-binding response regulator [Lysinibacillus fusiformis ZC1] gi|298725770|gb|EFI66404.1| DNA-binding response regulator [Lysinibacillus fusiformis ZC1] Length = 223 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 40/222 (18%), Positives = 88/222 (39%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +G + + + L D++ ++ G Sbjct: 3 ILVVDDDVHILQLVNIYLTKEGYQVLLAENAKQALALLEGNLPDLAVVDVM--MPGMDGF 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L + +P++ ++ L+ F +G DD V KP +E+L R+AAI RR Sbjct: 61 TLTEYLTQDYDIPVLLLTAKGELEDKERGFLAGSDDYVVKPFEPKELLFRIAAILRRFDK 120 Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 N + + + LP +E +L L + + ++ I ++G Sbjct: 121 KNQVTIQVGKLVIDRRSFEVVIGENTLILPLKEFELLALLASRPHQVFTRSYIMEQVWG- 179 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D +E + +H+ ++R++L + + R +GY ++ Sbjct: 180 YDYDGDEQTLNTHVKRIRERLNRYDTAVEITTVRGVGYKLEE 221 >gi|290958895|ref|YP_003490077.1| two-component response regulator [Streptomyces scabiei 87.22] gi|260648421|emb|CBG71532.1| putative two-component response regulator [Streptomyces scabiei 87.22] Length = 251 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 49/225 (21%), Positives = 89/225 (39%), Gaps = 11/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ G + + + D+ ++ L Sbjct: 29 LLVVDDEEGIRSMLTMALEFLGYQVTAAATGRQALQAVTRHDPDLILLDVNL--PDLGGF 86 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAI 115 E+ R +R VP++ ++ + + D G DD V KP +E+ AR + Sbjct: 87 EVCRTLRDRGNAVPVLFLTGLGGVDDRVRGLDMGGDDFVTKPFELKEVAARVRALLRRSG 146 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 R NR G I++ +D L E +L YLM N G+ +++ QI Sbjct: 147 GGRPAPDRNRLRAGAIQLDADAHQVWAADRPVDLTTTEFALLRYLMENPGRVLSRGQIQE 206 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ DE VV+++I LR+KL G + + R +GY + Sbjct: 207 RVWNHRDEGSG--VVDTYIYYLRRKLGEP-GQSLIRTVRGVGYQL 248 >gi|253689341|ref|YP_003018531.1| two component transcriptional regulator, winged helix family [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251755919|gb|ACT13995.1| two component transcriptional regulator, winged helix family [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 242 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 42/226 (18%), Positives = 80/226 (35%), Gaps = 9/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + + + + ++ L G L Sbjct: 13 ILIVEDEPKLGQLLVDYLQAADYATHWLPNGNDVVDWVRQHSPSLILLDLML--PGCDGL 70 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116 L R IR S VP+I ++ L + G DD + KP RE++ R + Sbjct: 71 TLCRTIRQFSNVPIIMVTARSEEIDRLLGLEIGADDYICKPFSPREVVVRVRTLLRRCGW 130 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + V + + G G+ L E R+L+ L GK ++ + Sbjct: 131 QNDGVKAIEKTETALVIDKGGFQASYLGQNLDLTPAEFRLLKTLSTEPGKVFSREALLDK 190 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 +Y + V + ++SHI LR+KL + + +GY + Sbjct: 191 LYDDY-RVVTDRTIDSHIKNLRRKLEQLDEETSFIRTVYGIGYRWE 235 >gi|22298132|ref|NP_681379.1| two-component response regulator [Thermosynechococcus elongatus BP-1] gi|22294310|dbj|BAC08141.1| two-component response regulator [Thermosynechococcus elongatus BP-1] Length = 256 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 48/233 (20%), Positives = 92/233 (39%), Gaps = 15/233 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS--------AREDVSAIEAFL 53 ++I+D L+++ + ++G + L + + +V I + Sbjct: 24 ILVIEDEDLIRETVVLALQEEGYHTLVASDGYEALNLIHTYLLRETSPEQGEVCLIILDV 83 Query: 54 IGKGEKVLELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 + G L+L R+IR P++ IS S + + G DD + KP RE+LAR Sbjct: 84 MLPGINGLDLCRLIRRQGCTVPILMISAKGSEIDRVVGLEIGADDYLAKPFGMREMLARC 143 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVF----PLPRRERRILEYLMANRGKRV 168 A+ RR ++ E + + L +E ++LE M + + Sbjct: 144 RALLRRTRIQQATLPPVLRFRDLCLYPQECRATLRGEELNLSPKEYKLLELFMRHPRRVW 203 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + Q+ ++G D + V+ HI LR+K+ + + + R GY Sbjct: 204 PREQLLDQVWG-PDFVGDSKTVDVHIRWLREKIETDPSHPQYILTVRGFGYRF 255 >gi|238760009|ref|ZP_04621161.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia aldovae ATCC 35236] gi|238701762|gb|EEP94327.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia aldovae ATCC 35236] Length = 260 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 38/224 (16%), Positives = 90/224 (40%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A +++ + +G + S D+ ++ L G + Sbjct: 36 ILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVMRLSEPFPDLVLLDWML--PGGSGI 93 Query: 62 ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 + + ++ +P++ ++ + + + G DD + KP +E++AR+ A+ RR Sbjct: 94 QFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRR 153 Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + E + + + E ++L + M + + ++ Q+ + Sbjct: 154 ISPMAVEEVIEMQGLSLDPSSHRVMSNEHALDMGPTEFKLLHFFMTHPERVYSREQLLNY 213 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + VE+ V+ HI +LRK L V + R GY Sbjct: 214 VWGT-NVYVEDRTVDVHIRRLRKALETDGHDKMVQTVRGTGYRF 256 >gi|228989436|ref|ZP_04149424.1| Two-component response regulator [Bacillus pseudomycoides DSM 12442] gi|228770307|gb|EEM18883.1| Two-component response regulator [Bacillus pseudomycoides DSM 12442] Length = 233 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 43/230 (18%), Positives = 87/230 (37%), Gaps = 11/230 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++D ++G + ++ + ++ + Sbjct: 6 ILVVDDEKEIRDLITIYLKNEGYKVLQAEDGAEGLYILEKNEVHLVVLDIM--MPKIDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-------AA 114 + IR ++P+I +S + +G DD V KP + E++AR+ Sbjct: 64 HMCMKIREAKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELMARIKSQLRRYMK 123 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + + N E G +++ V+ E L RE ILE L N + QI+ Sbjct: 124 MNGFVVQNENEIEIGNMKINVSTHKVVVENEEVKLTPREFSILELLARNPEMVFSAEQIY 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDWN 223 ++ +N V HI K+R+K + + +GY I+ + Sbjct: 184 EKVWNERSFQ-SDNTVMVHIRKIREKTEENPRKPIYIKTVWGVGYKIEKD 232 >gi|269926213|ref|YP_003322836.1| two component transcriptional regulator, winged helix family [Thermobaculum terrenum ATCC BAA-798] gi|269789873|gb|ACZ42014.1| two component transcriptional regulator, winged helix family [Thermobaculum terrenum ATCC BAA-798] Length = 228 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 44/221 (19%), Positives = 96/221 (43%), Gaps = 4/221 (1%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + ++IDD + G ++ ++ + + S D+ ++ + Sbjct: 5 LILVIDDDKNITSFLRRALSYAGYEVKTAHNGQEGLQVALSNAPDLVILDW--LMPDMDG 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ + +R+ +P++ ++ + + ++G DD + KP H E++ARV A+ RR Sbjct: 63 IEVCKRLRSADNIPILMLTAKDEVSDRVQGLEAGADDYLVKPFAHEELIARVKALLRRAS 122 Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + V R+ + V L +E +L M + + + + Q+ ++G Sbjct: 123 PDSRKVLRFADLSVDLGTREVKRGQRVIDLTAKEFDLLVTFMQHPRQVLTRDQLLQIVWG 182 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 FD VE +VV ++ LR KL + + R +GY + Sbjct: 183 -FDMEVESHVVAVYVGYLRDKLEAGGESRLIHTLRGVGYVL 222 >gi|254414181|ref|ZP_05027948.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] gi|196178856|gb|EDX73853.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] Length = 227 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 47/221 (21%), Positives = 94/221 (42%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A + +G + ++ D+ ++ L G L Sbjct: 5 ILVVEDEAKLAKFIELELQYEGYQVSVAPDGFAGLATARESQPDLLILDWML--PGVSGL 62 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +R+ P+I ++ + + D+G DD V KP E+LARV A RR + Sbjct: 63 EICRRLRSTGDKVPIILLTAKDEVSDRVAGLDAGADDYVVKPFSLEELLARVRAHLRRNQ 122 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEV-FPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + +G+ L +E +L+YL+++ + + + QI ++G Sbjct: 123 EEDPDTLQFADLSLNHSTREVYRGDRLIELTAKEFDLLDYLISHPRQVLTRDQILERVWG 182 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D + N++E ++ LR KL V + R +GY + Sbjct: 183 -YDFMGDSNIIEVYVRYLRLKLEANGEKRLVQTVRGVGYVL 222 >gi|169827423|ref|YP_001697581.1| hypothetical protein Bsph_1857 [Lysinibacillus sphaericus C3-41] gi|168991911|gb|ACA39451.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41] Length = 240 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 48/229 (20%), Positives = 91/229 (39%), Gaps = 11/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D ++ ++ + S + D++ ++ Sbjct: 15 ILVVDDEKEIADLIELYLKNENYNVFKYYSAQEALACIEREGLDLAILDIM--MPEIDGF 72 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + IR P+I ++ ++ F G DD + KP E++ARV A RR + Sbjct: 73 TILQKIRETYNFPVIMLTAKEEEIDKINGFSLGADDYITKPFRPLELVARVKAQLRRFTL 132 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF-------PLPRRERRILEYLMANRGKRVAKTQIF 174 N ++ + G L E IL YL +NRGK ++ ++F Sbjct: 133 YNQSSKPHEDTIDFAGLMINKNTRQVLLNERQLSLTPTEFSILWYLSSNRGKVISSEELF 192 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 I+G N V HI LR+K+R+ + + + +GY+I+ Sbjct: 193 QEIWGEK-YFNSNNTVMVHIRHLREKMRDSVENPKFIKTVWGVGYTIEK 240 >gi|194445785|ref|YP_002039637.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194404448|gb|ACF64670.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 229 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 39/222 (17%), Positives = 93/222 (41%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D A +++ + +G + + D+ ++ L G G + Sbjct: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNKLNEPWPDLILLDWMLPGGSGLQF 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ + +P++ ++ + + ++G DD + KP +E++AR+ A+ RR+ Sbjct: 65 IKHLKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS 124 Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 E + + + E ++L + MA+ + ++ Q+ + ++ Sbjct: 125 PMAVEEVIEMQGLSLDPGSHRVMTGDSPLDMGPTEFKLLHFFMAHPERVYSREQLLNHVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G + VE+ V+ HI +LRK L + V + R GY Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALEHSGHDRMVQTVRGTGYRF 225 >gi|322831802|ref|YP_004211829.1| transcriptional regulator [Rahnella sp. Y9602] gi|321167003|gb|ADW72702.1| two component transcriptional regulator, winged helix family [Rahnella sp. Y9602] Length = 239 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 46/222 (20%), Positives = 83/222 (37%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + I G + + L + + ++ L G L Sbjct: 14 ILIVEDEPKLAQLLIDYLEAAGYATQWLPDGHDVITLVKNQPPALILLDLML--PGSSGL 71 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R IR S VP++ ++ L + G DD + KP RE++ARV I RR Sbjct: 72 SICRDIRQFSDVPIMMVTAKTEEIDRLLGLEIGADDYICKPYSPREVVARVKVILRRCVR 131 Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + QG L E R+L+ L G + + + +Y Sbjct: 132 PGEHVAKETGLHIDEARFQATFQGHELELTPAEFRLLKTLSVKPGYVFTREVLLNNLYDD 191 Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + V + ++SHI LR+KL + + + +GY + Sbjct: 192 Y-RVVTDRTIDSHIKNLRRKLESLDGEKAFIRAVYGVGYRWE 232 >gi|300855686|ref|YP_003780670.1| putative two-component response regulator [Clostridium ljungdahlii DSM 13528] gi|300435801|gb|ADK15568.1| predicted two-component response regulator [Clostridium ljungdahlii DSM 13528] Length = 227 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 45/225 (20%), Positives = 97/225 (43%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ A +G+++ + + + D+ ++ Sbjct: 5 ILMVDDEERMRFLIEAYLKSEGLNMIPAGNGQEALEKFNENHVDLVVLDIM--MPVMDGW 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117 + +R S VP+I ++ + L F G D V KP+ + +I A + Y Sbjct: 63 TACKELRKISNVPIIMLTARAEDEEQLLGFQLGTDSYVTKPVSPKVLVAKIKALLKRTYS 122 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + N + + + +G + +V E L +E +L YL+ N+ +++ +I AI Sbjct: 123 EEENQNKQNSYDGLYINREGHEVKVDDENVYLSPKEFELLCYLIKNKDIVLSREKILDAI 182 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +G+ D + V++H+ +LR+KL K + + R +GY + Sbjct: 183 WGI-DYYGDLRTVDTHVKRLREKLGVKSY--LIATVRGVGYKFEV 224 >gi|282860432|ref|ZP_06269498.1| two component transcriptional regulator, winged helix family [Streptomyces sp. ACTE] gi|282564168|gb|EFB69704.1| two component transcriptional regulator, winged helix family [Streptomyces sp. ACTE] Length = 243 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 46/228 (20%), Positives = 92/228 (40%), Gaps = 13/228 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD V++ +G E + D+ ++ L Sbjct: 12 LIVDDEPAVREALQRSLAFEGYGTEVAVDGYDALAKVEAYAPDLIVLDI--QMPRMDGLT 69 Query: 63 LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 R IR+ S P++ ++ ++ + D+G DD + KP E+ AR+ A+ RR Sbjct: 70 AARRIRSTGSTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSSY 129 Query: 122 ---------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 ++ +R+ + R+ L R E +LE +A+ + + + Q Sbjct: 130 AVAAGGTDPDDDVLSFADLRMDLNTREVTRGSRRVELTRTEFTLLEMFLAHPRQVLTREQ 189 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I A++G FD N ++ ++ LR+K V + R +GY++ Sbjct: 190 ILKAVWG-FDFEPSSNSLDVYVMYLRRKTEAGGEPRLVHTVRGVGYAL 236 >gi|255284237|ref|ZP_05348792.1| regulatory protein VanR [Bryantella formatexigens DSM 14469] gi|255265190|gb|EET58395.1| regulatory protein VanR [Bryantella formatexigens DSM 14469] Length = 231 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 42/229 (18%), Positives = 86/229 (37%), Gaps = 10/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D ++ + + + + D++ ++ L Sbjct: 5 ILIVDDEREIADVIGLYLKNENFEAVKCYNGKDALAAVNEEKPDLAILDVML--PDIDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + IR P+I ++ ++ G DD + KP + E++ARV A RR Sbjct: 63 TILQKIRETYTFPVIMLTAKTEYMDKINGLTLGADDYIEKPFNPLELIARVKAQLRRYTK 122 Query: 122 SNNRAETGPIRVFS-------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N+ + + + L E IL L NRG+ ++ Q+F Sbjct: 123 YNDGGKPQEDIIDFGGLLMNRSTHECTFNERELTLTPIEFDILWILCENRGQVISSEQLF 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSIDW 222 ++ N V HI LR+K+ +G + + + +GY ++ Sbjct: 183 EQVWHEKYYKQSNNTVMVHIRHLREKMGGPMGKTEFIKTVWGVGYKVEK 231 >gi|213582579|ref|ZP_03364405.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 239 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 42/224 (18%), Positives = 84/224 (37%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + I + N + D+ ++ L G L Sbjct: 12 ILIVEDEPKLGQLLIDYLRAASYAPTLINHGDKVLPYVRQTPPDLILLDLML--PGIDGL 69 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118 L R IR S +P++ ++ L + G DD + KP RE + + + Sbjct: 70 TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 129 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + P+ + G+ L E R+L+ L GK ++ Q+ + +Y Sbjct: 130 QRELQQQDAESPLMIDESRFQASWCGKALDLTPAEFRLLKTLSLEPGKVFSREQLLNHLY 189 Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + V + ++SHI LR+KL + + + +GY + Sbjct: 190 DDY-RVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 232 >gi|229132743|ref|ZP_04261589.1| Two-component response regulator vanR [Bacillus cereus BDRD-ST196] gi|228650753|gb|EEL06742.1| Two-component response regulator vanR [Bacillus cereus BDRD-ST196] Length = 242 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 39/229 (17%), Positives = 84/229 (36%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +G ++ ++ E + ++ ++ ++ + Sbjct: 16 ILIVDDDRDIIRFINVNLEQEGFTVFSADNGEEALEVLNNNDVQLAILDVM--MPQMDGI 73 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARVA 113 EL R IR +P++ +S S + F +G DD + KP E Sbjct: 74 ELCRRIREKYSLPIMFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 133 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 ++V + + + R + GE L + E IL + A + +I Sbjct: 134 FNQNAVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYDILYLMAAAMNRVFTIEEI 193 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + +++ N V HI++LR K+ + + +GY I+ Sbjct: 194 YESVWKERAYE-SNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIE 241 >gi|157962787|ref|YP_001502821.1| two component transcriptional regulator [Shewanella pealeana ATCC 700345] gi|157847787|gb|ABV88286.1| two component transcriptional regulator, winged helix family [Shewanella pealeana ATCC 700345] Length = 229 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 34/224 (15%), Positives = 88/224 (39%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D +++ + G + + + + D+ ++ G + Sbjct: 5 ILIVEDELAIREMLTFVLEQHGYTTVAAEDYDSALDMLTEPYPDLVLLDWM--FPGGSGI 62 Query: 62 ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIY 116 +L + +R +P+I ++ + + + G DD + KP +E+ + Sbjct: 63 QLAKRLRQDEFTRHIPIIMLTARGEEEDKVRGLEVGADDFMTKPFSPKELVARIKAVMRR 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + +++ V EV + E R+L + M ++ + ++ Q+ Sbjct: 123 SAPTCLEDPIDVQGLQLDPVSHRVTVGDEVLDMGPTEFRLLHFFMTHQERVYSREQLLDN 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + VE+ V+ HI +LRK + + + + R GY Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKAVTHSGHDRLIQTVRGAGYRF 225 >gi|312126427|ref|YP_003991301.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor hydrothermalis 108] gi|311776446|gb|ADQ05932.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor hydrothermalis 108] Length = 224 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 47/223 (21%), Positives = 97/223 (43%), Gaps = 6/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ +G + + + + + + D+ ++ Sbjct: 4 ILIVDDDPHIRELVAHFLTLEGFDIYEAANGKDALNILDTVKVDLVILDIM--MPEIDGW 61 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +L IR + +P++ ++ + F+ G DD + KP E++ARV A+ RR + Sbjct: 62 QLCHNIRKYYGDIPILMLTVKGETNDKVKGFEVGADDYLVKPFDPIELVARVKALLRRYQ 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFP-LPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +S ++ + GE LP +E +L L + GK + Q+ I+G Sbjct: 122 ISTSQTIKIGELFLNKKTYECRVGEEEILLPPKEFELLFKLASYPGKTFTRDQLIEEIWG 181 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D +E V+ HI +LR+K +K + + R LGY ++ Sbjct: 182 -YDYEGDERTVDVHIKRLREKF-SKYCIFVIRTIRGLGYRLEV 222 >gi|301061392|ref|ZP_07202164.1| response regulator receiver domain protein [delta proteobacterium NaphS2] gi|300444516|gb|EFK08509.1| response regulator receiver domain protein [delta proteobacterium NaphS2] Length = 229 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 44/224 (19%), Positives = 86/224 (38%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 +++DD + + +G + + E + R D+ ++ L G +V Sbjct: 6 ILVVDDEEDILELVNFNLAKEGYRVISTTTGERAVEMSRVERPDLIVLDLMLPGMDGLEV 65 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIY 116 + + + +P++ ++ + + G DD V KP + I A + Sbjct: 66 AKFLKKNQETQNIPIVMLTAKGEESDVVTGLELGADDYVTKPFSPKILLARIRAVLRRKA 125 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 ++ + + + R+ V +V L E IL YL+ G ++QI A Sbjct: 126 TETPKPSDVIKVQNLIIHPGRREVRVDDKVIDLTYTEFGILRYLVQRPGWVFTRSQIVDA 185 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + G D V + V+ I LRKKL +++ R +GY Sbjct: 186 VRG-SDYFVTDRSVDVQIVGLRKKLG--FMGKYIETVRGVGYRF 226 >gi|295397798|ref|ZP_06807865.1| DNA-binding response regulator [Aerococcus viridans ATCC 11563] gi|294973967|gb|EFG49727.1| DNA-binding response regulator [Aerococcus viridans ATCC 11563] Length = 358 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 50/224 (22%), Positives = 96/224 (42%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A + D A G + S + D+ ++ L G L Sbjct: 134 ILIVDDEASILDIVEAYLSAKGYQVFRALSGNEALKKVDIVQPDLIVLDLML--PGLSGL 191 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IR S VP+I ++ + + L+ G DD + KP +E++ARV + RR++ Sbjct: 192 EVCKKIRDSSTVPIIMLTAKTAEKDILEGLSLGADDYITKPFSPKELVARVETVLRRVQP 251 Query: 122 SNNRAETGPIR----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + ++ D + QGE L E +L L ++ + ++ Q+ A+ Sbjct: 252 EYREEKWSFEEGLLVIYPDRKQVFKQGEEIILTPTEYALLALLASHPKRIFSREQLLDAV 311 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220 GL D + V+++HI +R+K+ + + + GY Sbjct: 312 KGL-DFDGTDRVIDTHIKNIRQKIEDDTRNPYFILTAYGTGYRF 354 >gi|291297174|ref|YP_003508572.1| two component transcriptional regulator, winged helix family [Meiothermus ruber DSM 1279] gi|290472133|gb|ADD29552.1| two component transcriptional regulator, winged helix family [Meiothermus ruber DSM 1279] Length = 224 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 50/219 (22%), Positives = 97/219 (44%), Gaps = 4/219 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D + G+ G +++ + A D+ ++ L Sbjct: 4 ILLIEDDPEIAHLLQLELGEAGYTVDWASGGMSGLVRLREATPDLVILDLGL--PDLDGG 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IRA +VP+I ++ +++ + G DD + KP H E+LAR+ R + Sbjct: 62 EVARRIRAGYEVPIIVLTAADAVERKVSLLSDGADDYIVKPFHPAELLARIQVQLRHREG 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + G + + +G+ L +E +L L++ GK ++ +I ++G Sbjct: 122 GEQISVGGLEVHLAKRQVL-FEGQELRLSPKEFELLSLLVSRAGKVFSRQEIEEHLWGR- 179 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + NVV+ HI+ LR KLR + + + R +GY++ Sbjct: 180 QLERDSNVVDVHIANLRAKLREAGAYGYLRTVRGVGYAL 218 >gi|15802560|ref|NP_288587.1| DNA-binding transcriptional regulator BaeR [Escherichia coli O157:H7 EDL933] gi|12516285|gb|AAG57142.1|AE005434_6 transcriptional response regulatory protein (sensor BaeS) [Escherichia coli O157:H7 str. EDL933] Length = 240 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 44/224 (19%), Positives = 89/224 (39%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + I + + + D+ ++ L G L Sbjct: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLSYVRQTPPDLILLDLML--PGTDGL 70 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 L R IR S +P++ ++ L + G DD + KP RE++ARV + Sbjct: 71 TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + P+ + +G++ L E R+L+ L GK ++ Q+ + +Y Sbjct: 131 QRELQQQDAESPLIIDEXRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190 Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + V + ++SHI LR+KL + + + +GY + Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 >gi|257069207|ref|YP_003155462.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Brachybacterium faecium DSM 4810] gi|256560025|gb|ACU85872.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Brachybacterium faecium DSM 4810] Length = 231 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 42/220 (19%), Positives = 87/220 (39%), Gaps = 5/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + G + R D+ ++ L G + Sbjct: 10 ILVVDDDQAIAEMVGIVLRGKGYEVATSPDGASALETFPRLRPDLVLLDLML--PGMDGI 67 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R S VP+I ++ ++ ++G DD + KP E++AR+ A RR + Sbjct: 68 EVCRRLRRESGVPIIMLTARTDTADVVEGLEAGADDYLTKPFEPEELVARIKARVRRSEE 127 Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 T + DG + ++ L E +L L + + + ++G Sbjct: 128 PTTEQLTIGDLTIDVDGHEVRRGDQLISLTPLEFDLLTQLARKPWQVFTRDVLLRDVWG- 186 Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219 + + + +V H+ +LR K+ + V + R +GY Sbjct: 187 YRHSADTRLVNVHVQRLRSKIEHDPENPSIVVTVRGVGYR 226 >gi|228913685|ref|ZP_04077312.1| Response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|301052645|ref|YP_003790856.1| transcriptional regulator [Bacillus anthracis CI] gi|228845973|gb|EEM90997.1| Response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|300374814|gb|ADK03718.1| transcriptional regulator [Bacillus cereus biovar anthracis str. CI] Length = 240 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 39/225 (17%), Positives = 89/225 (39%), Gaps = 8/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +++DD + + A+ +G + + + + R D+ ++ L Sbjct: 13 ILIVDDEKEILNLLEAVLKKEGFRHIYTCTTGKGGIHMCRQVRPDLILLDIML--PDLDG 70 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR---EILARVAAIYR 117 + IR + VP+ +S + G DD + KP + + + Sbjct: 71 YSVCEQIRQFTFVPIFFLSAKNEDLDKILGLSIGGDDYITKPFSPKEVAYKMKAFFRRNQ 130 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + N + G I + G + L +E IL +L+ N + +K +++ A+ Sbjct: 131 YKEKNPNMYQFGDITIDEAQGTVLRAGTLLNLTAKEFNILLFLIKNPNQIFSKARLYEAV 190 Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 +G +N++ H+ LR+K+ + + + + R LGY ++ Sbjct: 191 WGET-YLGNDNIMMVHMRHLREKIEDNPSKPNYLVTVRGLGYKLN 234 >gi|228987919|ref|ZP_04148027.1| hypothetical protein bthur0001_45860 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229158275|ref|ZP_04286342.1| hypothetical protein bcere0010_44530 [Bacillus cereus ATCC 4342] gi|228625233|gb|EEK81993.1| hypothetical protein bcere0010_44530 [Bacillus cereus ATCC 4342] gi|228771842|gb|EEM20300.1| hypothetical protein bthur0001_45860 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 229 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 47/229 (20%), Positives = 88/229 (38%), Gaps = 11/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D + + ++ +S E + D+ ++ L Sbjct: 4 ILLIEDEVSIAELQRDYLEISDFQVDVEHSGEIGLQMALQEDYDLIILDIML--PKMNGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IRA +P++ +S + G DD + KP E++ARV A R + Sbjct: 62 EICKQIRAIKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121 Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + I + R + E +E +L + + N + + K Q+F Sbjct: 122 LSGNVSKQRDTLYIHGISIDQRARKVFINNEEIAFTTKEFDLLTFFVTNPNQVLNKEQLF 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 I+GL D A + V HI KLR+K+ + +++ GY + Sbjct: 182 ERIWGL-DSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRFNV 229 >gi|87301909|ref|ZP_01084743.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. WH 5701] gi|87283477|gb|EAQ75432.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. WH 5701] Length = 234 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 45/233 (19%), Positives = 89/233 (38%), Gaps = 17/233 (7%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR------EDVSAIEAFLIG 55 +++DD ++ G +G + +++ D+ ++ L Sbjct: 4 LLIVDDDDGIRTTLEEALGQEGFEVACAADGRQAIQQIDASQRQGSASFDLVLLDLML-- 61 Query: 56 KGEKVLELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI------HHREI 108 G L++ R +R P++ +S + + + G DD + KP Sbjct: 62 PGVGGLDVCRHLRRSDPHTPILMVSARDTETDRVLGLELGADDYLVKPFGLRELVARCRA 121 Query: 109 LARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 L R + G + ++ D +GE L +E R++E+ M N G+ Sbjct: 122 LLRRSQQTIERFPVGQIIHHGDLSLYPDEFRVTREGERVNLSPKEYRLVEFFMQNPGRVW 181 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++ Q+ ++G D V+ V+ HI LR+KL N + + + R GY Sbjct: 182 SRNQLIDQVWGT-DYVVDTKTVDVHIRWLREKLEVNPSAPEHILTVRGFGYRF 233 >gi|307718247|ref|YP_003873779.1| transcriptional regulatory protein [Spirochaeta thermophila DSM 6192] gi|306531972|gb|ADN01506.1| transcriptional regulatory protein [Spirochaeta thermophila DSM 6192] Length = 226 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 49/224 (21%), Positives = 89/224 (39%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 +++DD + + +G + + D ++ L G +V Sbjct: 3 ILVVDDEPDIVELVRFHLEREGYDVVSTGEGRDALEKARNLLPDAIILDLMLPGMSGLEV 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L R S +P++ ++ + + G DD + KP R +LAR+ A+ +R + Sbjct: 63 CRLLRQQDRTSHIPILMLTAKSEETDVVVGLELGADDYITKPFSPRILLARLKAVLKRTR 122 Query: 121 VSNNRAETGPI----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 R++ + + V+G L E IL +L N G ++ QI A Sbjct: 123 PPEGRSDEPIVVGELVIDPHRYSVRVRGREIILSATEFAILSFLARNPGWVFSRQQIIDA 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + G D V E V+ I +RKKL + D + + R +GY + Sbjct: 183 VKGE-DYPVTERAVDVQILSIRKKLGD--ARDYIQTVRGVGYRL 223 >gi|56965856|ref|YP_177590.1| two-component response regulator [Bacillus clausii KSM-K16] gi|56912102|dbj|BAD66630.1| two-component response regulator [Bacillus clausii KSM-K16] Length = 236 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 42/225 (18%), Positives = 89/225 (39%), Gaps = 11/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + + D+ ++ L K + Sbjct: 5 ILVVDDEKSIADILKFNLEKEGFDVTCAYDGNEALERVKERKPDLMLLDIMLPYK--DGM 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-------ILARVAA 114 E+ R +R +P+I ++ S + + G DD V KP RE L R Sbjct: 63 EVCREVRKQYDLPIIMLTAKDSEIDKVLGLELGADDYVIKPFSTRELLARVKANLRRQQV 122 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + G + + + + +GE L RE ++ YL + G+ + + + Sbjct: 123 AADDAPTTQKEITIGELSILPEAYQVKKRGEPVDLTHREFELIHYLGKHLGQVMTREHLL 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218 A++G +D + V+ + +LR+K+ + + + ++R +GY Sbjct: 183 QAVWG-YDYFGDVRTVDVTVRRLREKVEDNPSYPNWIMTRRGVGY 226 >gi|15826987|ref|NP_301250.1| two-component response regulator [Mycobacterium leprae TN] gi|221229465|ref|YP_002502881.1| putative two-component response regulator [Mycobacterium leprae Br4923] gi|81856515|sp|Q9CD68|MPRA_MYCLE RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial persistence regulator A gi|13092534|emb|CAC29682.1| putative two-component response regulator [Mycobacterium leprae] gi|219932572|emb|CAR70267.1| putative two-component response regulator [Mycobacterium leprae Br4923] Length = 228 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 50/224 (22%), Positives = 95/224 (42%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 + +DD V++ +G S+E N + + R D ++ L Sbjct: 3 ILAVDDDRAVRESLRRSLSFNGYSVELANDGVEALEMVARDRPDALVLDVM--MPRLDGL 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +R+ P++ ++ S+ + D+G DD + KP E+LAR+ A+ RR K Sbjct: 61 EVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARIRALLRRTK 120 Query: 121 VSN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + + R+ L R E +LE L+AN + + +++I Sbjct: 121 PDDAAESVAMSFSDLTLDPVTREVARGQRWISLTRTEFALLEMLIANPRRVLTRSRILEE 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G FD N +E ++ LR+K + + R +GY + Sbjct: 181 VWG-FDFPTSGNALEVYVGYLRRKTEADGESRLIHTVRGVGYVL 223 >gi|270263528|ref|ZP_06191797.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270042412|gb|EFA15507.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 229 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 38/224 (16%), Positives = 91/224 (40%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A +++ + +G + S D+ ++ L G + Sbjct: 5 ILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRLSEPFPDLVLLDWML--PGGSGI 62 Query: 62 ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 + + ++ +P++ ++ + + + G DD + KP +E++AR+ A+ RR Sbjct: 63 QFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRR 122 Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + E + + + + E ++L + M + + ++ Q+ + Sbjct: 123 ISPMAVEEVIEMQGLSLDPSSHRVMANEQALDMGPTEFKLLHFFMTHPERVYSREQLLNH 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + VE+ V+ HI +LRK L V + R GY Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALETTGHDKMVQTVRGTGYRF 225 >gi|229012369|ref|ZP_04169546.1| Two component transcriptional regulator, winged helix [Bacillus mycoides DSM 2048] gi|229167829|ref|ZP_04295561.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH621] gi|228615645|gb|EEK72738.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH621] gi|228749005|gb|EEL98853.1| Two component transcriptional regulator, winged helix [Bacillus mycoides DSM 2048] Length = 232 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 47/229 (20%), Positives = 80/229 (34%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD + + +G + E + S D+ ++ Sbjct: 6 ILIADDEVEIAELIGIHLEKEGYHVVKATDGEEAVLIIQSQPIDLVILDIM--MPKMDGY 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR +P+I +S S + G DD + KP E++ARV A RR Sbjct: 64 EVTRQIRVKYNMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFAPIELVARVNAQLRRFLT 123 Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 N + + R V GE L +E IL L+++ K + I Sbjct: 124 LNQPKVEENKSVLEVGGVVINLEQRKLNVYGEQIELTPKEFDILYLLVSHPKKVYSVENI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSID 221 ++ V HI LRKK+ + + +GY+ + Sbjct: 184 LQQVWADDYYDGGS-TVAVHIRTLRKKIGEDTRKNKLIKTVWGVGYTFN 231 >gi|206976692|ref|ZP_03237597.1| regulatory protein VanR [Bacillus cereus H3081.97] gi|217962576|ref|YP_002341148.1| regulatory protein VanR [Bacillus cereus AH187] gi|222098545|ref|YP_002532603.1| response regulator protein [Bacillus cereus Q1] gi|229141828|ref|ZP_04270356.1| Two-component response regulator [Bacillus cereus BDRD-ST26] gi|206745178|gb|EDZ56580.1| regulatory protein VanR [Bacillus cereus H3081.97] gi|217062992|gb|ACJ77242.1| regulatory protein VanR [Bacillus cereus AH187] gi|221242604|gb|ACM15314.1| response regulator protein [Bacillus cereus Q1] gi|228641664|gb|EEK97967.1| Two-component response regulator [Bacillus cereus BDRD-ST26] Length = 234 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 41/231 (17%), Positives = 88/231 (38%), Gaps = 12/231 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ ++G + E L + ++ + Sbjct: 6 IMVVDDEKEIRELIAIYLKNEGYRVLQAEDGEEGLELLKKNEVHLIVLDIM--MPKIDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH--------REILARVA 113 + +R +++P+I +S + +G DD V KP + ++ + Sbjct: 64 HMCMKVREIAEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMK 123 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + N E G +++ + +V L RE ILE L N+G ++ QI Sbjct: 124 MNGGISVQNENEVEIGDMKINVTTHKVTIADQVVKLTPREFAILELLARNQGMVMSAEQI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223 + ++ + +N V HI K+R+K+ V + +GY I+ + Sbjct: 184 YERVW-KEEAFQSDNTVMVHIRKIREKIEENPRKPRYVKTVWGVGYKIEKD 233 >gi|138893859|ref|YP_001124312.1| response regulator [Geobacillus thermodenitrificans NG80-2] gi|196250567|ref|ZP_03149257.1| two component transcriptional regulator, winged helix family [Geobacillus sp. G11MC16] gi|134265372|gb|ABO65567.1| Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Geobacillus thermodenitrificans NG80-2] gi|196209916|gb|EDY04685.1| two component transcriptional regulator, winged helix family [Geobacillus sp. G11MC16] Length = 228 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 45/223 (20%), Positives = 90/223 (40%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L+DD V + +G + + + + ++ L + Sbjct: 5 LLLVDDEERVLEFMEPFLRQEGFEIVTAKTGKEALQKAKETNPSLVVLDWML--PEMSGI 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R +R S V +I ++ + + G DD + KP RE+ AR+ ++ RR++ Sbjct: 63 DVCRELRKTSHVGIIMVTAKTEETDKIIGLEVGADDYITKPFSLRELAARIRSVLRRIEG 122 Query: 122 SNNRAETGPIRVFSDG---RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 +N+ E + +G L E ++L L A G ++ Q+ +I+ Sbjct: 123 QDNQEELMKRGDLTISEAQCRVWKRGSEISLTPTEFKLLLTLAAKPGVVYSRLQLLQSIF 182 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 D +E V++HIS+LRKK+ + + + GY Sbjct: 183 -EDDLFNDERTVDAHISRLRKKIEDDPSRPVYIQTVYGFGYRF 224 >gi|81427690|ref|YP_394688.1| two-component system, response regulator [Lactobacillus sakei subsp. sakei 23K] gi|4104602|gb|AAD10263.1| putative response regulator [Lactobacillus sakei subsp. sakei 23K] gi|78609330|emb|CAI54376.1| Two-component system, response regulator [Lactobacillus sakei subsp. sakei 23K] Length = 237 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 40/230 (17%), Positives = 87/230 (37%), Gaps = 14/230 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + E D+ ++ L L Sbjct: 5 ILVVDDEKPISDIVKFNLTKEGYDVYTAYDGEEALQQVEEVVPDLILLDLML--PKVDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILAR 111 E+ R +R +P+I ++ S + + G DD V KP +R Sbjct: 63 EVARQVRKSHDMPIIMVTAKDSEIDKVIGLELGADDYVTKPFSNRELVARVKANLRRQGS 122 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + + N+ G + + + +G L RE +L YL + G+ + + Sbjct: 123 TSQSDKEANEENHEINIGDLTIHPEAYIVSKRGTKIELTHREFELLHYLAKHIGQVMTRE 182 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + ++G +D + V+ + +LR+K+ + + + ++R +GY + Sbjct: 183 HLLQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPEWLVTRRGVGYYL 231 >gi|257899652|ref|ZP_05679305.1| transcriptional regulator [Enterococcus faecium Com15] gi|257837564|gb|EEV62638.1| transcriptional regulator [Enterococcus faecium Com15] Length = 244 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 47/227 (20%), Positives = 94/227 (41%), Gaps = 12/227 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + D +G + E + D+ ++ L LE Sbjct: 15 LVVDDEKPISDIVKFNLAKEGYDVYTAYDGEEALEKVAEVEPDLILLDLML--PKMDGLE 72 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +R +P+I ++ S + + G DD V KP +RE++ARV A RR + Sbjct: 73 VAREVRKTYDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRGATA 132 Query: 123 NNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 E + + +GE L RE +L YL + G+ + + + Sbjct: 133 TREPEDAAPAELTIGDLTIHPEAYMVTKRGETIELTHREFELLFYLAKHLGQVMTREHLL 192 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++G +D + V+ + +LR+K+ + + + ++R +GY + Sbjct: 193 QTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPNYLVTRRGVGYYL 238 >gi|284992664|ref|YP_003411218.1| winged helix family two component transcriptional regulator [Geodermatophilus obscurus DSM 43160] gi|284065909|gb|ADB76847.1| two component transcriptional regulator, winged helix family [Geodermatophilus obscurus DSM 43160] Length = 238 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 42/219 (19%), Positives = 83/219 (37%), Gaps = 5/219 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD A + + + +G + R D+ ++ L G L+ Sbjct: 19 LVVDDDAALAEMLGIVLRREGYEPAFVSDGNRAVGAFQQTRPDIVLLDLML--PGRNGLQ 76 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLKV 121 + + IR S VP++ ++ + ++G DD V KP E++ARV A R Sbjct: 77 ICQDIRTQSTVPIVMLTAKGDTIDVVQGLEAGADDYVTKPFKPVELVARVRAQLRRGETG 136 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 G +++ G L E +L L + + + ++G + Sbjct: 137 QAENLSIGDVQIDVPAHQVTRDGVPIALTPLEFDLLVALARKPRQVFTRELLLEQVWG-Y 195 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVD-SKRFLGYS 219 A + +V H+ +LR K+ + + R +GY Sbjct: 196 RHAADTRLVNVHVQRLRAKIERDPEKPEIVLTVRGVGYK 234 >gi|154503112|ref|ZP_02040172.1| hypothetical protein RUMGNA_00936 [Ruminococcus gnavus ATCC 29149] gi|153796106|gb|EDN78526.1| hypothetical protein RUMGNA_00936 [Ruminococcus gnavus ATCC 29149] Length = 231 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 40/223 (17%), Positives = 88/223 (39%), Gaps = 6/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + ++ G ++ + D++ I ++ Sbjct: 12 ILVVDDESRMRKLVKDFLVRQGYTVLEAADGMEAMDYFYEDK-DIALIILDVMMPKMDGW 70 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV--NKPIHHREILARVAAIYRRL 119 ++ R IR HS+VP+I ++ + L FD GVD+ + + Sbjct: 71 QVCREIRMHSKVPIIMLTARSEERDELQGFDLGVDEYISKPFSPKILVARVEAILRRTQG 130 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + G I V G L +E +L Y + N+G +++ +I + ++ Sbjct: 131 SGNTDEISAGGIVVDKAAHTVMSDGSPVDLSFKEFELLTYFIENQGIALSREKILNNVW- 189 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D + +++H+ KLR KL +K + + + +GY + Sbjct: 190 NYDYFGDARTIDTHVKKLRSKLGDKG--EYIKTIWGMGYKFEV 230 >gi|291523393|emb|CBK81686.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Coprococcus catus GD/7] Length = 228 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 46/224 (20%), Positives = 87/224 (38%), Gaps = 6/224 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G S E S + L + + + L+ G Sbjct: 4 ILIVEDDTNINNLLQEALSKAGYSCEQAFSGTEAKLLLNMQEHSYALVLLDLMLPGITGE 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + IR +P+I ++ SL + SG DD + KP RE+LAR+ R + Sbjct: 64 AVLEEIRKKGNLPVIVLTAKDSLDEKVKVLTSGADDYITKPFEIREVLARIQVQLRHKEE 123 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF-----PLPRRERRILEYLMANRGKRVAKTQIFSA 176 E Q ++ + ++E ILE L+ N + +K IF Sbjct: 124 KETEEEHNLSFKKMVLNRDTFQVKIDGKILSKITKQEFAILELLLRNPKQVFSKEDIFEY 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + E ++ HIS +RKK++ + +++ +GY + Sbjct: 184 AWDEP-YMGETKTLDVHISNIRKKIKTVTSEEYIETVWGIGYRL 226 >gi|266619369|ref|ZP_06112304.1| regulatory protein VanR [Clostridium hathewayi DSM 13479] gi|288869086|gb|EFD01385.1| regulatory protein VanR [Clostridium hathewayi DSM 13479] Length = 235 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 43/232 (18%), Positives = 83/232 (35%), Gaps = 14/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + DG + N+ + + ++ G + Sbjct: 7 ILVVDDEKEIAELVEIYLVSDGYKVFKANNAMDGLDILDKNEIHLVLLDIM--MPGMDGM 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH----------HREILAR 111 E+ R IR + +P+I +S + + +G DD V KP + + Sbjct: 65 EMCRKIRETNNIPIIMLSAKSTDLDKIMGLGTGADDYVTKPFNPLELTARVKSQLRRYTQ 124 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + + + N + + D V GE L E IL L +N G+ + Sbjct: 125 LNPNSAVNEKAGNEITIRGLIINKDNHKVTVYGEEIKLTPIEFDILYLLASNPGRVFSTD 184 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 +IF ++ N V HI +LR K++ + + +GY I+ Sbjct: 185 EIFEKVWNEKVYEAN-NTVMVHIRRLRGKMKEDTRQNKIITTVWGVGYKIEK 235 >gi|295690072|ref|YP_003593765.1| winged helix family two component transcriptional regulator [Caulobacter segnis ATCC 21756] gi|295431975|gb|ADG11147.1| two component transcriptional regulator, winged helix family [Caulobacter segnis ATCC 21756] Length = 254 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 46/228 (20%), Positives = 89/228 (39%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++D G ++E E + + D+ ++ L GE L Sbjct: 22 ILIVDDDPGIRDVVSDFLSRHGYAVETAQDARTMEQVLARGPIDLIVLDVML--PGEDGL 79 Query: 62 ELPRIIRAHSQVPLIGI-SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R + + + P I + S + + G DD + KP + RE+LARV A+ RR + Sbjct: 80 AICRRLSSAADGPAIIMLSAMGEETDRIVGLELGADDYLPKPCNPRELLARVRAVLRRRQ 139 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRR--------ERRILEYLMANRGKRVAKTQ 172 + G ++ P+ E +L + + + + Q Sbjct: 140 EPRVADDAMGAACEFAGWRLDLVRRELRSPQSVVVNLSSGEFSLLRAFVERPQRVLTRDQ 199 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + G D + ++ IS+LR+KL + G + + + R GY Sbjct: 200 LLDLARGR-DSDAYDRAIDVQISRLRRKLDDGGGGELIRTIRSEGYMF 246 >gi|152965198|ref|YP_001360982.1| two component transcriptional regulator, winged helix family [Kineococcus radiotolerans SRS30216] gi|151359715|gb|ABS02718.1| two component transcriptional regulator, winged helix family [Kineococcus radiotolerans SRS30216] Length = 254 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 48/232 (20%), Positives = 88/232 (37%), Gaps = 21/232 (9%) Query: 4 LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63 +++D + D +G ++E L DV ++ L G LE+ Sbjct: 22 VVEDEPTIADAVARRLRAEGYTVETAGDGPSGVELCERVTPDVVVLDVML--PGFDGLEV 79 Query: 64 PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV-- 121 R ++A VP++ ++ L G DD + KP RE++ARV + RR++ Sbjct: 80 CRRVQAARPVPVLMLTARDDETDKLVGLGVGADDYMTKPFSMRELVARVNGLVRRVERAR 139 Query: 122 ------------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 G + + R G L E +L L + + Sbjct: 140 ALVGAPAPSAEAMRFPVSDGELEIDRAQRRVRRAGTEVHLTPTEFDLLVCLAESPRTVLT 199 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + ++ ++ D + V+SH+ LR+KL G D V + +GY+ + Sbjct: 200 REKLLEEVWDWADASG-TRTVDSHVKALRRKL----GADLVRTVHGVGYAFE 246 >gi|156742564|ref|YP_001432693.1| two component transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|219850344|ref|YP_002464777.1| winged helix family two component transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|156233892|gb|ABU58675.1| two component transcriptional regulator, winged helix family [Roseiflexus castenholzii DSM 13941] gi|219544603|gb|ACL26341.1| two component transcriptional regulator, winged helix family [Chloroflexus aggregans DSM 9485] Length = 232 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 47/221 (21%), Positives = 96/221 (43%), Gaps = 6/221 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + + G +++ +A D+ ++ L L Sbjct: 4 LIVEDERAIAGYIKRGLEEQGYAVDVAYDGREALDWLDAAPFDLVILDLML--PQIDGLT 61 Query: 63 LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R +RA +P++ ++ S+ + DSG DD + KP +E+LAR+ A+ RR Sbjct: 62 VCRELRARGFRMPVLMLTARDSIDDRVRGLDSGADDYLVKPFAIQELLARLRALARRSTD 121 Query: 122 SNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + + + R G+ L +E ILE LM G+ + +T I ++ Sbjct: 122 APKTPVLHIADLMLDTATRRVSRGGKYIELTAKEYAILECLMRASGRLLTRTMIAEHVW- 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D + NV++ +I LR+K+ + + + R GY + Sbjct: 181 NYDTFNQSNVIDVYIRNLRRKIDDPFPVKLIQTVRGAGYRL 221 >gi|29376255|ref|NP_815409.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecalis V583] gi|227518892|ref|ZP_03948941.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecalis TX0104] gi|227553507|ref|ZP_03983556.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecalis HH22] gi|229549877|ref|ZP_04438602.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecalis ATCC 29200] gi|255972661|ref|ZP_05423247.1| DNA-binding response regulator [Enterococcus faecalis T1] gi|256961795|ref|ZP_05565966.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis Merz96] gi|257086989|ref|ZP_05581350.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis D6] gi|257419428|ref|ZP_05596422.1| DNA-binding response regulator [Enterococcus faecalis T11] gi|293382858|ref|ZP_06628776.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecalis R712] gi|293389655|ref|ZP_06634110.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecalis S613] gi|312907671|ref|ZP_07766662.1| response regulator receiver domain protein [Enterococcus faecalis DAPTO 512] gi|312910288|ref|ZP_07769135.1| response regulator receiver domain protein [Enterococcus faecalis DAPTO 516] gi|312951633|ref|ZP_07770528.1| response regulator receiver domain protein [Enterococcus faecalis TX0102] gi|29343718|gb|AAO81479.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecalis V583] gi|44933850|gb|AAS49397.1| response regulator [Enterococcus faecalis] gi|227073683|gb|EEI11646.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecalis TX0104] gi|227177377|gb|EEI58349.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecalis HH22] gi|229304950|gb|EEN70946.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecalis ATCC 29200] gi|255963679|gb|EET96155.1| DNA-binding response regulator [Enterococcus faecalis T1] gi|256952291|gb|EEU68923.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis Merz96] gi|256995019|gb|EEU82321.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecalis D6] gi|257161256|gb|EEU91216.1| DNA-binding response regulator [Enterococcus faecalis T11] gi|291079523|gb|EFE16887.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecalis R712] gi|291081048|gb|EFE18011.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus faecalis S613] gi|310626699|gb|EFQ09982.1| response regulator receiver domain protein [Enterococcus faecalis DAPTO 512] gi|310630350|gb|EFQ13633.1| response regulator receiver domain protein [Enterococcus faecalis TX0102] gi|311289561|gb|EFQ68117.1| response regulator receiver domain protein [Enterococcus faecalis DAPTO 516] gi|315027859|gb|EFT39791.1| response regulator receiver domain protein [Enterococcus faecalis TX2137] gi|315144942|gb|EFT88958.1| response regulator receiver domain protein [Enterococcus faecalis TX2141] gi|315147397|gb|EFT91413.1| response regulator receiver domain protein [Enterococcus faecalis TX4244] gi|315152346|gb|EFT96362.1| response regulator receiver domain protein [Enterococcus faecalis TX0031] gi|315158211|gb|EFU02228.1| response regulator receiver domain protein [Enterococcus faecalis TX0312] gi|315162380|gb|EFU06397.1| response regulator receiver domain protein [Enterococcus faecalis TX0645] gi|315168899|gb|EFU12916.1| response regulator receiver domain protein [Enterococcus faecalis TX1341] gi|315576088|gb|EFU88279.1| response regulator receiver domain protein [Enterococcus faecalis TX0309B] gi|315580662|gb|EFU92853.1| response regulator receiver domain protein [Enterococcus faecalis TX0309A] gi|323480862|gb|ADX80301.1| two-component response regulator protein, PhoR [Enterococcus faecalis 62] Length = 236 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 47/230 (20%), Positives = 90/230 (39%), Gaps = 15/230 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + +G + + L S + D ++ L G LE Sbjct: 5 LVVDDEPSILTLLTFNLEKEGYQVTTSEDGKNGFELALSNQYDFIILDVML--PGMDGLE 62 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + +R P++ ++ + + G DD + KP RE+LAR+ AI+RRLK Sbjct: 63 ITKALRREKIDTPILILTAKDEQVDKIIGLEIGADDYLTKPFSPREVLARMKAIFRRLKP 122 Query: 122 SNNRAETGPIRV----------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + + V+ + L +E +L Y M + + + + Sbjct: 123 TTTETLQEDTPKAPLVIGEIRVDEQNYEVFVRNQPIELTPKEFELLVYFMKRKDRVINRE 182 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + I+ +D A + +V+ HIS LR K+ + + + R GY Sbjct: 183 TLLERIW-QYDFAGQSRIVDVHISHLRDKIEPDPKRPVYLVTVRGFGYRF 231 >gi|241895845|ref|ZP_04783141.1| response regulator [Weissella paramesenteroides ATCC 33313] gi|241870888|gb|EER74639.1| response regulator [Weissella paramesenteroides ATCC 33313] Length = 234 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 47/229 (20%), Positives = 92/229 (40%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + L S D+ ++ L + Sbjct: 4 ILVVDDEKPISDIIKFNLTKEGYDVAVAMDGREALDLFESEEPDLVLLDQML--PEVEGT 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR SQ P+I ++ S + + G DD V KP +RE+LAR+ A RR Sbjct: 62 EVLRQIRTKSQTPVIMVTAKDSEIDKVLGLEMGADDYVTKPFSNRELLARIKANLRRQSP 121 Query: 122 SNNRAETGPIRVF---------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + ++ D G+ L RE +L +L + G+ + + Sbjct: 122 VSGQSGQVDDSGDIKIGALTIHPDAYMVSKNGQDIELTHREFELLHHLSKHIGQVMTRDD 181 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + ++G +D + V+ + ++R+K+ + ++R +GY + Sbjct: 182 LLQTVWG-YDYFGDVRTVDVTVRRIREKIEETPSHPQILMTRRGVGYYL 229 >gi|89894512|ref|YP_517999.1| hypothetical protein DSY1766 [Desulfitobacterium hafniense Y51] gi|219668942|ref|YP_002459377.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|89333960|dbj|BAE83555.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219539202|gb|ACL20941.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 232 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 41/230 (17%), Positives = 86/230 (37%), Gaps = 14/230 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + + G + + D+ ++ L G L Sbjct: 4 ILIVEDDSSIAELERDYLEVAGFDVTLSTDGVEGLRAIQNNEFDLIILDIML--PGLDGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + ++ +P++ +S + G DD + KP E++ARV A + Sbjct: 62 EILKSMKEDKDIPVLLVSAKKEEIDKIKGLSLGADDYITKPFSPGELVARVKAHIENYER 121 Query: 122 SNNRAETGPIRVF----------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 R G + D R V + L ++E +L YL N + + Sbjct: 122 LKERFNAGIKKRQSITIRGLKIEKDSRRVFVNHQEVNLAQKEFDLLLYLAQNPNRVFGRE 181 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++F I+GL + + V HI+++R+K + +++ GY Sbjct: 182 ELFERIWGL-ESLGDSATVTVHIARIREKTEIDPSKPQYIETVWGAGYRF 230 >gi|325663722|ref|ZP_08152126.1| hypothetical protein HMPREF0490_02867 [Lachnospiraceae bacterium 4_1_37FAA] gi|331087242|ref|ZP_08336312.1| hypothetical protein HMPREF0987_02615 [Lachnospiraceae bacterium 9_1_43BFAA] gi|325470215|gb|EGC73448.1| hypothetical protein HMPREF0490_02867 [Lachnospiraceae bacterium 4_1_37FAA] gi|330408928|gb|EGG88389.1| hypothetical protein HMPREF0987_02615 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 230 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 40/230 (17%), Positives = 85/230 (36%), Gaps = 11/230 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D D ++ F + E + + D++ ++ L G Sbjct: 3 ILVVDDEKEIADVIALYLQSDQYTVYPFYTGEEALECMKTTKIDLAILDVML--PGIDGF 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH--------REILARVA 113 E+ + IR P+I ++ + G DD + KP + ++ Sbjct: 61 EILKKIRERYTFPVIMLTAKTEYIDKITGLTLGADDYILKPFNPLELIARVKAQLRRYTQ 120 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 S + + +++ + + + L E +L L NRGK ++ ++ Sbjct: 121 YNEGTRTDSGDIIDFAGLQLNRESHECVYNEKQLTLTPIEFDLLWMLCENRGKVISSEEL 180 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSIDW 222 F ++ N V HI LR+K+ G D + + +GY ++ Sbjct: 181 FENVWKEKYYKNSNNTVMVHIRHLREKMSGPTGKSDFIKTVWGVGYKVEE 230 >gi|320161443|ref|YP_004174667.1| OmpR family two-component response regulator [Anaerolinea thermophila UNI-1] gi|319995296|dbj|BAJ64067.1| OmpR family two-component response regulator [Anaerolinea thermophila UNI-1] Length = 226 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 53/222 (23%), Positives = 90/222 (40%), Gaps = 7/222 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +LI+D + + G + + + L + D+ ++ L G L+ Sbjct: 5 LLIEDETELARVAQSYLEKAGFQVILASRGDTGLSLFRQHKPDLVLLDLNL--PGMDGLD 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRRL 119 + R IR S VPLI ++ L + G DD + KP RE++ARV + R Sbjct: 63 VAREIRRQSDVPLIMVTARVEETDRLIGLELGADDYIVKPYSVRELVARVRAVLRRFNRS 122 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + G + V D + E L E ++L LMA G+ + Q+ AI G Sbjct: 123 SGGSQILREGNLEVDLDTHTVKRGDEEIFLTPTEFQLLSTLMAQPGRVFTRLQLLEAIQG 182 Query: 180 LFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220 + E +++HI LR K+ + V++ +GY Sbjct: 183 VA-YEGYERTIDAHIKNLRAKIEEDPHHPHYVETVFGVGYRF 223 >gi|310659192|ref|YP_003936913.1| DNA-binding response regulator in two-component regulatory system with phor (or crec) [Clostridium sticklandii DSM 519] gi|308825970|emb|CBH22008.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Clostridium sticklandii] Length = 230 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 47/225 (20%), Positives = 90/225 (40%), Gaps = 8/225 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61 +++DD + + G +E E + + ++ L G KV Sbjct: 6 LIVDDEENIVELLKFNMELKGYKVEYAYDGEEALKKAKDIKPGLILLDLMLPIMDGTKVC 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 R P+I ++ + + + G DD + KP +E++ARV A+ RR Sbjct: 66 SKIREDEELKDTPIIMLTAKNMEKDKIYGLELGADDYITKPFSIKELMARVKAVTRRYAA 125 Query: 122 SNNRAETG-----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + + + + + E L +E +L+ L NRGK + + + Sbjct: 126 PSQPIMDTSLEISELYIDMENYEVFKRNEKIDLTLKEFELLKLLALNRGKVLTRNYLLDK 185 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 I+G ++ E V+ HI LRKK+ + +++ R +GY I Sbjct: 186 IWG-YEYFGETRTVDVHIRHLRKKIEDNDKKPQYIETIRGVGYKI 229 >gi|229013874|ref|ZP_04171002.1| hypothetical protein bmyco0001_42830 [Bacillus mycoides DSM 2048] gi|228747543|gb|EEL97418.1| hypothetical protein bmyco0001_42830 [Bacillus mycoides DSM 2048] Length = 229 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 44/229 (19%), Positives = 87/229 (37%), Gaps = 11/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + + ++ +S E D+ ++ L Sbjct: 4 ILLVEDEISIAELQRDYLEISDFQVDVEHSGETGLQRALQEDYDLIILDIML--PKMNGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IRA +P++ +S + G DD + KP E++ARV A R + Sbjct: 62 EICKQIRAIKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121 Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + I + R + E +E +L + + + + + K Q+F Sbjct: 122 LSGNVSKQRDTLYIHGISIDQRARKVFINNEEIAFTMKEFDLLTFFVTHPNQVLNKEQLF 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 I+GL + A + V HI KLR+K+ + +++ GY + Sbjct: 182 ERIWGL-ESAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRFNV 229 >gi|229150108|ref|ZP_04278331.1| Two-component response regulator vanR [Bacillus cereus m1550] gi|228633407|gb|EEK90013.1| Two-component response regulator vanR [Bacillus cereus m1550] Length = 243 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 40/229 (17%), Positives = 82/229 (35%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +G + ++ E + ++ ++ ++ + Sbjct: 17 ILIVDDDKDIIQFINVNLKQEGFKVFSAHNGEEALEIINNNSIQLAILDIM--MPQMDGI 74 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARVA 113 EL R IR +P++ +S S + F +G DD + KP E Sbjct: 75 ELCRRIREKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 134 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 +V + + + R + GE L + E IL + A R +I Sbjct: 135 FNQNAPQVMEKKINIRGLEIDEVSRTVMLYGERINLTKTEYDILHLMAAARNCVFTIEEI 194 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + +++ N V HI++LR K+ + + +GY I+ Sbjct: 195 YESVWNERAYE-SNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIE 242 >gi|210634507|ref|ZP_03298134.1| hypothetical protein COLSTE_02056 [Collinsella stercoris DSM 13279] gi|210158808|gb|EEA89779.1| hypothetical protein COLSTE_02056 [Collinsella stercoris DSM 13279] Length = 237 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 52/234 (22%), Positives = 88/234 (37%), Gaps = 15/234 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D ++G + + L D++ ++ L Sbjct: 6 ILVVDDEKTITDLVGIYLRNEGYDVTLAYTGADAARLILEQEFDLAVLDIML--PDVDGF 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL R IR P+I ++ S ++ G DD + KP E++AR A RR Sbjct: 64 ELLRTIRTERTYPVIMLTARDSQADKIEGLSLGADDYMVKPFRPLELVARCKAQLRRYTS 123 Query: 122 SNNRAE------------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 R + + + D R V + E IL YL +RG V Sbjct: 124 YGTREQSVAAEDAGPIIAFNGLSINKDARTVTVDEKPVRCTPLEYSILLYLAEHRGCVVP 183 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 ++F A++ A N V HI LR+KL + + + +GY+I+ Sbjct: 184 VEELFRAVWDEEFMAGSNNTVMVHIRHLREKLGDDAQNPRFIKNIWGVGYTIEK 237 >gi|163736445|ref|ZP_02143864.1| two component transcriptional regulator, winged helix family protein [Phaeobacter gallaeciensis BS107] gi|163743309|ref|ZP_02150690.1| phosphate regulon transcriptional regulatory protein PhoB [Phaeobacter gallaeciensis 2.10] gi|161383497|gb|EDQ07885.1| phosphate regulon transcriptional regulatory protein PhoB [Phaeobacter gallaeciensis 2.10] gi|161390315|gb|EDQ14665.1| two component transcriptional regulator, winged helix family protein [Phaeobacter gallaeciensis BS107] Length = 229 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 48/221 (21%), Positives = 88/221 (39%), Gaps = 4/221 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61 ++++D ++ DG + E + D+ ++ + G +V Sbjct: 9 LVVEDELAQREVLAYNLEADGFRVLRAEHGEEALLIVEEDMPDIIVLDWMMPNLSGIEVC 68 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + +P+I +S + ++G DD V KP E++ARV RR++ Sbjct: 69 RRLKTRTETRNIPIIMLSARSEEVDKVRGLETGADDYVVKPYSVIELMARVRTQLRRVRP 128 Query: 122 SNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S I + ++ L E R+L M G+ ++ Q+ ++G Sbjct: 129 STVGVRLEFDDIILDAETHKVSRAEAPLKLGPTEFRLLSTFMEKPGRVWSREQLLDRVWG 188 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D V+ V+ HI +LRK L G DPV + R GY++ Sbjct: 189 R-DIYVDTRTVDVHIGRLRKALTQHGGSDPVRTVRGAGYAL 228 >gi|119896748|ref|YP_931961.1| two-component response regulator [Azoarcus sp. BH72] gi|119669161|emb|CAL93074.1| two-component response regulator [Azoarcus sp. BH72] Length = 228 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 44/224 (19%), Positives = 89/224 (39%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D A + G +++ +L ++A D ++ L L Sbjct: 3 ILLVEDDAQQAGYIRKGLQEAGHTVDVAADGRDGLFLATTASFDAIVLDRML--PRVDGL 60 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIY 116 + R +RA P++ +S + + +G DD + KP + A Sbjct: 61 TVLRTLRASRIATPVVVLSALGEVDDRVAGLRAGSDDYLVKPFALSELLARLDALQRRGN 120 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 R + R +T + + R L +E R+LE+L+ + G+ V ++ + A Sbjct: 121 GRAEAEQTRLQTADLEMDLLRRSVSRGATRIELKPKEFRLLEFLLRHSGQVVTRSMLLEA 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ + + NV++ HIS LR K+ + + R GY + Sbjct: 181 VWD-YHFDPQTNVIDVHISNLRAKIDLPGLPPLIHTVRGAGYRL 223 >gi|71736926|ref|YP_274577.1| DNA-binding response regulator BaeS [Pseudomonas syringae pv. phaseolicola 1448A] gi|71557479|gb|AAZ36690.1| DNA-binding response regulator BaeS [Pseudomonas syringae pv. phaseolicola 1448A] gi|330890080|gb|EGH22741.1| DNA-binding response regulator BaeS [Pseudomonas syringae pv. mori str. 301020] Length = 227 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 45/221 (20%), Positives = 83/221 (37%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + G S ++ + + ++ L G + Sbjct: 10 ILIVEDEPKLASLMRDYLIAAGYSTHCLSNGLEVVPAVRAQPPQLILLDIML--PGRDGM 67 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R +R+ S VP++ I+ L D G DD + KP RE + R Sbjct: 68 DICRELRSFSAVPIVMITARVEEIDRLLGLDLGADDYICKPFSPRE-MVARVKAILRRTS 126 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 S + ++V G L E R+L + G+ ++ + +Y Sbjct: 127 STDPHTPKGLQVDEAHYQASFNGVSLDLTPVELRLLATFARSPGRVFSRDHLLDRLYSDH 186 Query: 182 DEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221 V + V+SHI LR+KL G DP+ S +GY ++ Sbjct: 187 -RVVTDRTVDSHIRNLRRKLEQACPGQDPIQSLYGVGYKLE 226 >gi|313887875|ref|ZP_07821554.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Peptoniphilus harei ACS-146-V-Sch2b] gi|312846041|gb|EFR33423.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Peptoniphilus harei ACS-146-V-Sch2b] Length = 227 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 44/223 (19%), Positives = 90/223 (40%), Gaps = 9/223 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L++D ++ +G ++ S E + D+ ++ L G E Sbjct: 6 LLVEDEESIRKFVKINLEREGYTIFEAGSGEEGIEIARRELPDIVVLDIML--PGIDGFE 63 Query: 63 LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118 + + +R + +I ++ + G DD + KP + E+ R+ +I RR Sbjct: 64 VCKTLRGEFPSLGIIMLTAKAEDYDKIMGLQYGTDDYLTKPFNPTELTLRIKSIERRLEI 123 Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + +N P ++ S R L E +I++ M N GK + + +I + Sbjct: 124 GEENESNLITDPPFKIDSYSRKFYKDDVELELTPTEYQIIKIFMTNPGKAMTRNEILKLV 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219 +G D + +V+ +I +LR K+ N D +++ GY Sbjct: 184 WG-DDFLGDSKIVDVNIRRLRSKIETNPAKPDYIETVWGTGYR 225 >gi|256785613|ref|ZP_05524044.1| transcriptional regulatory protein [Streptomyces lividans TK24] Length = 221 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 49/221 (22%), Positives = 93/221 (42%), Gaps = 5/221 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +LI+D ++ G + S E L R D+ ++ L G E Sbjct: 1 MLIEDDDAIRTALELSLTRQGHRVATAASGEDGLKLLREQRPDLIVLDVML--PGIDGFE 58 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR Q+P+I ++ + +SG DD V KP+ R + AR+ A+ RR + Sbjct: 59 VCRRIRRTDQLPIILLTARNDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGERE 118 Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + + + GE L E R+L L G+ +++ Q+ ++ Sbjct: 119 STDSASFGSLVIDRSAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVW-EH 177 Query: 182 DEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 D + +V++ + +LR K+ + + + R +GY +D Sbjct: 178 DYLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRLD 218 >gi|126729385|ref|ZP_01745199.1| two-component response regulator [Sagittula stellata E-37] gi|126710375|gb|EBA09427.1| two-component response regulator [Sagittula stellata E-37] Length = 228 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 40/221 (18%), Positives = 86/221 (38%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++D G S+ D+ ++ L Sbjct: 3 ILIVDDDPSLRDLLRLALERAGHSVICAADGAMALTHAMRETPDLIVLDIGL--PEMDGF 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119 E+ R +RA S VP++ ++ + + G DD V KP RE+ Sbjct: 61 EVCRRLRARSDVPVLFLTARDDEVDRIVGLEMGADDYVTKPFSPREVVARVAAILRRSGT 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++ G + + + R G+ L E ++L+ L+ G+ + ++ +A++G Sbjct: 121 PARDDTRGHGALTLDREARLCRAAGQPVALTGTEFQMLDTLIGAPGRLFTRAELAAAVWG 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + ++SH+ LR+KL + D +++ G + Sbjct: 181 AGAQQ-SDRTMDSHLRNLRRKLADAGIPDAIETVHAQGMRL 220 >gi|312864518|ref|ZP_07724749.1| transcriptional regulatory protein WalR [Streptococcus downei F0415] gi|311099645|gb|EFQ57858.1| transcriptional regulatory protein WalR [Streptococcus downei F0415] Length = 235 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 49/230 (21%), Positives = 94/230 (40%), Gaps = 15/230 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + D +G + + D+ ++ L + LE Sbjct: 5 LVVDDEKPISDIIKFNLIKEGYEVVTAFDGKEALKQFEDENPDLIILDWML--PELEGLE 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + IR S VP+I +S S + + G DD V KP +RE+LAR+ A RR + Sbjct: 63 VAKEIRKSSHVPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARIKAHLRRTENI 122 Query: 123 NNRAETGPIRVF-----------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 D + +GE L RE +L +L + G+ + + Sbjct: 123 ETAVAEENDTSDSELTIGDLQIIPDAFVAKKRGEELELTHREFELLHHLATHIGQVMTRE 182 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + ++G +D + V+ I +LR+K+ + + + ++R +GY + Sbjct: 183 HLLETVWG-YDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYM 231 >gi|304406669|ref|ZP_07388324.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] gi|304344202|gb|EFM10041.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] Length = 242 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 46/226 (20%), Positives = 105/226 (46%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + G + + E R D+ ++ L + Sbjct: 6 ILIVDDEPSISMLIEFNLKLAGYEVRCVHDGEAVFEHLKPFRPDLIVLDLML--PKMDGI 63 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ R +R + VP++ ++ + + D+G DD + KP +E+++R+ AI+RR++ Sbjct: 64 QVCRELRRQNNAVPIVMLTALQDVTDKISGLDNGADDYMTKPFSPQELISRIQAIFRRVQ 123 Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 E G ++V+ + R+ ++G++ L +E +L +L +RGK +++ Q+ Sbjct: 124 ALPGSNDTVVYEYGRLKVYPEQREVRIEGKLIELTPKEFELLVFLCRHRGKVLSRQQLLH 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 ++ + + +V+ HIS LR K+ + + + R +GY + Sbjct: 184 GVWD-YHFLGDTRIVDVHISHLRDKIEKNARTPEYIITVRNVGYKL 228 >gi|229084804|ref|ZP_04217062.1| Two-component response regulator [Bacillus cereus Rock3-44] gi|228698487|gb|EEL51214.1| Two-component response regulator [Bacillus cereus Rock3-44] Length = 250 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 85/228 (37%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +L+DD + D + + S + + L + D+ ++ L Sbjct: 19 ILLVDDEQGILDMLVLTLKKENFSHITTAINGAETLHLIKNHPFDIILLDVML--PDIDG 76 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL R IR ++ P++ ++ S L G DD + KP + E+ AR+ RR Sbjct: 77 FELCRQIRNYTNTPILFVTARSSDLDKLTGLGIGGDDYITKPFNPLEVAARINVQLRRQH 136 Query: 121 VSNNRAETGPIRVFSDGRDPEV-------QGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 ++ + + E +E +L +L + + Q+ Sbjct: 137 MTQEPNNGEKLNLHFRSFSLYPSEGLITVNNEPVHCTAKELELLTFLCTHPNRIFTAEQL 196 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 + ++GL ++ V HISKLRKK+ + + R +GY Sbjct: 197 YEQVWGLT-SIGDDKTVVMHISKLRKKIEENPKLPTYIVNLRGIGYKF 243 >gi|320449570|ref|YP_004201666.1| two-component response regulator [Thermus scotoductus SA-01] gi|320149739|gb|ADW21117.1| two-component response regulator [Thermus scotoductus SA-01] Length = 227 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 48/217 (22%), Positives = 88/217 (40%), Gaps = 4/217 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D A V + G ++E S + D+ ++ L Sbjct: 4 ILLIEDDAEVARLVELELKEAGFTVEWAKSGMEGLVRHREKKPDLVVLDLGL--PDLDGA 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IRA P++ ++ +++ + G DD + KP H E+ + R K Sbjct: 62 EVARRIRATDDTPILVLTAQDAVERKVGLLSDGADDYLVKPFHPAEL-LARIQVQLRHKE 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + G + ++ R L +E +L LM+ G+ + +I I+G Sbjct: 121 GSEVLSVGKLELYPKRRQVFFGETEVRLSPKEFDLLHLLMSRPGRVFPREEIEEKIWGKP 180 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + NV++ H++ LR KLR + + + R LGY Sbjct: 181 -LGRDSNVLDVHVANLRAKLREAGAYGYLRTVRGLGY 216 >gi|302385604|ref|YP_003821426.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] gi|302196232|gb|ADL03803.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] Length = 233 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 37/230 (16%), Positives = 82/230 (35%), Gaps = 12/230 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D ++ S+ F + + + D++ ++ L Sbjct: 5 ILVVDDEQEISDLLELYLQNENYSVFKFYTAKEALACIETTEIDIAILDIML--PDMSGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH---------REILARV 112 L + IR + P+I ++ + G DD + KP + + Sbjct: 63 TLCQKIRVNHAYPIIMLTAKDQEIDKITGLTLGADDYITKPFRPLEVVARVKAQLRRYKK 122 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + + + S + + + L E IL L+ +GK V+ + Sbjct: 123 YNSVQAGTTEESIIVHSGLVLNSSTHECILNEKPLDLTPTEFYILRILLERKGKVVSAEE 182 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 +F I+ N + HI LR+K+ + + + + +GY I+ Sbjct: 183 LFREIWKDEYYTKSNNTITVHIRHLREKMGDTVENPQYIKTIWGVGYKIE 232 >gi|326790239|ref|YP_004308060.1| transcriptional regulator [Clostridium lentocellum DSM 5427] gi|326541003|gb|ADZ82862.1| two component transcriptional regulator, winged helix family [Clostridium lentocellum DSM 5427] Length = 236 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 46/229 (20%), Positives = 89/229 (38%), Gaps = 11/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 V+IDD + + +G + + S+E + + D+ ++ L G Sbjct: 6 IVVIDDEEHILELIKYNLEANGFIVSTYTSVEAMQKSIGESPIDLILLDIMLPGMDGITA 65 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILAR 111 L + R VP++ +S + + G DD + KP RE A Sbjct: 66 LNIFRNHEQLGCVPVLLVSAKAEEIDKILGLELGADDYITKPFSVRELVARVKAILRRAD 125 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + + ++ +++ + + E L +E IL+ LM+N+GK + + Sbjct: 126 RNEVPTKKTEEDHFLVHQDLKLDIESHLLTFKDEPIELTYKEFEILKLLMSNKGKVLTRE 185 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I ++G +D E V+ HI LR K + +++ R +GY Sbjct: 186 VILDKVWG-YDYYGETRTVDVHIRYLRAKFEAYGIGEYIETVRGVGYRF 233 >gi|295096819|emb|CBK85909.1| phosphate regulon transcriptional regulatory protein PhoB [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 229 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 39/224 (17%), Positives = 92/224 (41%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A +++ + +G + + D+ ++ L G L Sbjct: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWML--PGGSGL 62 Query: 62 ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 + + I+ + +P++ ++ + + ++G DD + KP +E++AR+ A+ RR Sbjct: 63 QFIKHIKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + E + + + E ++L + M + + ++ Q+ + Sbjct: 123 ISPMAVEEVIEMQGLSLDPTSHRVMTGENPLDMGPTEFKLLHFFMTHPERVYSREQLLNN 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + VE+ V+ HI +LRK L V + R GY Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALELSGHDRMVQTVRGTGYRF 225 >gi|90961025|ref|YP_534941.1| two-component response regulator [Lactobacillus salivarius UCC118] gi|227891713|ref|ZP_04009518.1| response regulator [Lactobacillus salivarius ATCC 11741] gi|301299933|ref|ZP_07206164.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus salivarius ACS-116-V-Col5a] gi|90820219|gb|ABD98858.1| Two-component response regulator [Lactobacillus salivarius UCC118] gi|227866516|gb|EEJ73937.1| response regulator [Lactobacillus salivarius ATCC 11741] gi|300213968|gb|ADJ78384.1| Two-component response regulator [Lactobacillus salivarius CECT 5713] gi|300852478|gb|EFK80131.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus salivarius ACS-116-V-Col5a] Length = 236 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 47/230 (20%), Positives = 93/230 (40%), Gaps = 14/230 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + E D+ ++ L L Sbjct: 4 ILVVDDEKPISDIVKFNLTKEGYDVYTAYDGEEALQQVKEVEPDLILLDLML--PKIDGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 E+ R +R +P+I ++ S + + G DD V KP +RE++ARV A RR Sbjct: 62 EVAREVRKTHDMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRQSA 121 Query: 120 --------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 N+ G + + + G+ L RE +L YL + G+ + + Sbjct: 122 VAAKSSAEDDKNSEITVGDLTIHPEAYTVSKNGQRIELTHREFELLHYLAQHLGQVMTRE 181 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 + ++G +D + V+ + +LR+K+ + + ++R +GY + Sbjct: 182 HLLQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSRPTWLVTRRGVGYYL 230 >gi|319938402|ref|ZP_08012797.1| signal transduction regulator [Coprobacillus sp. 29_1] gi|319806490|gb|EFW03154.1| signal transduction regulator [Coprobacillus sp. 29_1] Length = 228 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 47/220 (21%), Positives = 96/220 (43%), Gaps = 5/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +I+D +++ +G + F++ D++ + L + Sbjct: 5 IYVIEDDENIQEIVKLSLESNGYQVTLFDNAIDAIIAIHEDAPDLAIFDVML--PQMDGI 62 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + IR + Q+P++ +S S + DSG DD + KP E+ ARV + RR++ Sbjct: 63 TAVKKIRETNTQMPILILSAKDSEIDKIHGLDSGSDDYMTKPFGVLELCARVRTLLRRVQ 122 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + +T + + + + L +E ++L YL+ N+ + V + ++ + I+G Sbjct: 123 PKSKSIQTPTLSIDKSTHIVQQNNQGIDLTHKEYQLLLYLIENKERVVERDELLNNIWG- 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D E ++ HI LRKKL + + + R +GY Sbjct: 182 YDFIGESRALDVHIRSLRKKLDDNGE-KYIKTVRSVGYRF 220 >gi|312140675|ref|YP_004008011.1| two component system response regulator mtra [Rhodococcus equi 103S] gi|325675695|ref|ZP_08155379.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707] gi|311890014|emb|CBH49332.1| two component system response regulator MtrA [Rhodococcus equi 103S] gi|325553666|gb|EGD23344.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707] Length = 225 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 43/220 (19%), Positives = 87/220 (39%), Gaps = 5/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + +G R D+ ++ L G + Sbjct: 5 ILVVDDDTALAEMLTIVLRGEGFEPYVVGDGSQALTAVRETRPDLVLLDLML--PGMNGI 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R++RA S VP++ ++ + +SG DD + KP +E++ARV A RR + Sbjct: 63 DVCRVLRAESGVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRRTEE 122 Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 G I + + L E +L L + + + ++G Sbjct: 123 EPAEVLSIGDIMIDVPAHKVTRDNALISLTPLEFDLLVALARKPRQVFTREVLLEQVWG- 181 Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219 + A + +V H+ +LR K+ + + V + R +GY Sbjct: 182 YRHAADTRLVNVHVQRLRAKVEKDPENPEVVLTVRGVGYK 221 >gi|229169399|ref|ZP_04297109.1| hypothetical protein bcere0007_43490 [Bacillus cereus AH621] gi|228614162|gb|EEK71277.1| hypothetical protein bcere0007_43490 [Bacillus cereus AH621] Length = 229 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 44/229 (19%), Positives = 87/229 (37%), Gaps = 11/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + + ++ S E + D+ ++ L Sbjct: 4 ILLVEDEISIAELQRDYLEISDFQVDVEYSGEIGLQMALQEDYDLIILDIML--PKMNGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IRA +P++ +S + G DD + KP E++ARV A R + Sbjct: 62 EICKQIRAIKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121 Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + I + R + E +E +L + + + + + K Q+F Sbjct: 122 LSGNVSKQRDTLYIHGISIDQRARKVFINNEEIAFTTKEFDLLTFFVTHPNQVLNKEQLF 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 I+GL + A + V HI KLR+K+ + +++ GY + Sbjct: 182 ERIWGL-ESAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRFNV 229 >gi|227329104|ref|ZP_03833128.1| DNA-binding transcriptional regulator BaeR [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 242 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 45/226 (19%), Positives = 83/226 (36%), Gaps = 9/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + + + + ++ L G L Sbjct: 13 ILIVEDEPKLGQLLVDYLQAADYATYWLPNGNDVVEWVRQHSPSLILLDLML--PGCDGL 70 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R IR S VP+I ++ L + G DD + KP RE++ RV + RR Sbjct: 71 TLCRTIRQFSNVPIIMVTARSEEIDRLLGLEIGADDYICKPFSPREVVVRVRTLLRRCGW 130 Query: 122 SNN-----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 N+ + + G G+ L E R+L+ L GK ++ + Sbjct: 131 QNDGLKAAEKTETALLIDKSGFQASYLGQNLDLTPAEFRLLKTLSTEPGKVFSREALLDK 190 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 +Y + V + ++SHI LR+KL + + +GY + Sbjct: 191 LYDDY-RVVTDRTIDSHIKNLRRKLEQLDEETSFIRTVYGIGYRWE 235 >gi|284034895|ref|YP_003384826.1| winged helix family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283814188|gb|ADB36027.1| two component transcriptional regulator, winged helix family [Kribbella flavida DSM 17836] Length = 236 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 44/224 (19%), Positives = 89/224 (39%), Gaps = 6/224 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++ +D + +G + D+ ++ + G V Sbjct: 5 ILVAEDDVKQAELIRRYLEREGHLTVVVHDGRAAIDEARRRSPDLLVLDVMMPKVDGLDV 64 Query: 61 LELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 + R R A + VP+I ++ + L D G DD + KP + RE++ARV + RR Sbjct: 65 CRVLRADRGAGAGVPIIMLTARSTEDDLLLGLDLGADDYLTKPYNPRELVARVRTVLRRT 124 Query: 120 KVSNNRAETGPIR--VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + + + + G++ + E +IL L A+ G+ ++ Q+ Sbjct: 125 RSRAEGEVYRAGDLEIDPERHEVRLAGDLVEVTPAEFKILACLAASPGRAFSRQQLLEHA 184 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 +G FD V + ++ H+ LRKK+ + + +GY + Sbjct: 185 FG-FDHYVFDRTIDVHVMNLRKKIEPAPATPQYLRTVYGVGYKL 227 >gi|166033144|ref|ZP_02235973.1| hypothetical protein DORFOR_02866 [Dorea formicigenerans ATCC 27755] gi|166027501|gb|EDR46258.1| hypothetical protein DORFOR_02866 [Dorea formicigenerans ATCC 27755] Length = 260 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 46/229 (20%), Positives = 88/229 (38%), Gaps = 10/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +D ++ F + + +S + D++ ++ L Sbjct: 34 ILVVDDEKEIADVIELYLKNDQYNVLKFYTGQEALDCIASTKIDLAILDIML--PDVDGF 91 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + IR P+I ++ + G DD + KP + E++ARV A RR Sbjct: 92 QILKQIREKYTFPVIMLTAKTEYMDKITGLTLGADDYIPKPFNPLELVARVKAQIRRYTQ 151 Query: 122 SNNRAETGPIRVFS-------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N + + + L E IL L NRGK ++ ++F Sbjct: 152 YNEGTKDEGDVIDFGGLFLNRQSHECTYNEVPLTLTPIEFDILWLLCENRGKVISSEELF 211 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSIDW 222 ++ N V HI LR+K+ G D + + +GY ++ Sbjct: 212 HKVWKEECYKNSNNTVMVHIRHLREKMNGPTGKSDFIKTVWGVGYKVEE 260 >gi|197118229|ref|YP_002138656.1| winged-helix transcriptional response regulator [Geobacter bemidjiensis Bem] gi|197087589|gb|ACH38860.1| winged-helix transcriptional response regulator [Geobacter bemidjiensis Bem] Length = 226 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 45/225 (20%), Positives = 88/225 (39%), Gaps = 7/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++I+D + + +G D+ ++ L G +V Sbjct: 4 ILIIEDERDLAELLAFNLEREGYKTIIAADGIEGLANAGHCHPDLIILDLMLPGMLGTEV 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117 + + + +P+I ++ + F+ G DD V KP RE+ RV Sbjct: 64 CKNLKKSERTAGIPVIMLTAKGEEIDKVVGFEVGADDYVVKPFSSRELNLRVKAVLRRSN 123 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 VS+ E GPI + +D V GE E ++L L G+ ++ + + Sbjct: 124 TETVSSTMIELGPITIDTDRHQVMVNGEEIFFTSTEFKLLHVLAQRLGRVQSRDVLLRDV 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +G ++ + V++HI++LR K+ D + + R GY ++ Sbjct: 184 WG-YNFVDDSRTVDTHITRLRTKMGAAG--DLIKTVRGFGYKLEV 225 >gi|317122946|ref|YP_004102949.1| transcriptional regulator [Thermaerobacter marianensis DSM 12885] gi|315592926|gb|ADU52222.1| two component transcriptional regulator, winged helix family [Thermaerobacter marianensis DSM 12885] Length = 276 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 54/221 (24%), Positives = 93/221 (42%), Gaps = 7/221 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + + DG +++ + L S D ++ L G E Sbjct: 4 LVVEDEERLAEAVRRALERDGHTVDVAHDGLQGLDLARSGTFDALVLDVML--PGLDGFE 61 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA--AIYRRL 119 + R +RA P++ ++ ++ + DSG DD + KP E+ ARV Sbjct: 62 ICRRLRAEGNPVPILILTARDAVADRVRGLDSGADDYLVKPFALVELQARVRALGRRAPR 121 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 E GP+R V G L RER +LE L+ N G+ ++ +I ++G Sbjct: 122 PPDPPVVEVGPVRFHPATGTVTVAGRPVELRPRERALLELLLRNPGRLFSRDEILDRVWG 181 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 E NVV+ H+ +LR+KL ++S R GY + Sbjct: 182 FDREPPASNVVDVHVCQLRRKLG--PASRLIESVRGYGYRL 220 >gi|257453592|ref|ZP_05618882.1| phosphate regulon transcriptional regulatory protein PhoB [Enhydrobacter aerosaccus SK60] gi|257449050|gb|EEV24003.1| phosphate regulon transcriptional regulatory protein PhoB [Enhydrobacter aerosaccus SK60] Length = 232 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 41/224 (18%), Positives = 93/224 (41%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D +++ + G + + L R ++ ++ L G + Sbjct: 6 ILVVEDEPAIREMIVTTLEMAGFDCLQASEVSQAHHLVVDHRPNLILLDWMLP-NGLSGI 64 Query: 62 ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IY 116 +L R ++ S++P+I ++ + D+G DD + KP RE+++R+ A Sbjct: 65 DLCRRLKKDEMLSEIPIIMLTAKGEEDNKVQGLDAGADDYITKPFSTRELVSRIKAVLRR 124 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + G + + + + + E R+L + M++ + +TQ+ Sbjct: 125 SSALSGEKPIDVGGLSLDPASQRVSANNKAVDIGPTEYRLLAFFMSHPERAYTRTQLLDQ 184 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + VE+ ++ HI +LRK L D + + R GY Sbjct: 185 VWG-GNVYVEDRTIDVHIRRLRKVLEPFGFADYIQTVRGTGYRF 227 >gi|227112647|ref|ZP_03826303.1| DNA-binding transcriptional regulator BaeR [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 242 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 46/226 (20%), Positives = 84/226 (37%), Gaps = 9/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + + + + ++ L G L Sbjct: 13 ILIVEDEPKLGQLLVDYLQAADYATHWLPNGNDVVEWVRLHSPSLILLDLML--PGCDGL 70 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R IR S VP+I ++ L + G DD + KP RE++ RV + RR Sbjct: 71 TLCRTIRQFSNVPIIMVTARSEEIDRLLGLEIGADDYICKPFSPREVVVRVRTLLRRCGW 130 Query: 122 SNNRAETGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 N+ + + G G+ L E R+L+ L A GK ++ + Sbjct: 131 QNDGLKAVEKTETALLIDKSGFQASYLGQNLDLTPAEFRLLKTLSAEPGKVFSREALLDK 190 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 +Y + V + ++SHI LR+KL + + +GY + Sbjct: 191 LYDDY-RVVTDRTIDSHIKNLRRKLEQLDEETSFIRTVYGIGYRWE 235 >gi|166368005|ref|YP_001660278.1| OmpR family two-component response regulator [Microcystis aeruginosa NIES-843] gi|166090378|dbj|BAG05086.1| two-component response regulator OmpR subfamily [Microcystis aeruginosa NIES-843] Length = 250 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 51/232 (21%), Positives = 97/232 (41%), Gaps = 16/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA-------REDVSAIEAFLI 54 ++++D +++D I ++G G + L S R D+ ++ L Sbjct: 21 ILIVEDEEVIRDMIILALEEEGYEALGVSDGRVALELLQSQESNHGESRFDLVVLDLML- 79 Query: 55 GKGEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113 L++ R++R H +P++ +S S + + G DD + KP RE++AR Sbjct: 80 -PQINGLDICRLLRYHGNIIPILILSAKASETDRVLGLEVGADDYLTKPFSMRELVARCR 138 Query: 114 AIYRRLKVSNNRAETGPIRVF----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 A+ RR ++ A V+ E L +E R+L+ M+ + + Sbjct: 139 ALIRRQGFTSLAAAPVRKFRDVLLYPQECRVTVRDEEINLSPKEFRLLDLFMSYPRRVWS 198 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + Q+ I+G D + V+ HI LR+KL + + + + R GY Sbjct: 199 REQLIEQIWG-PDFLGDTKTVDVHIRWLREKLEIDPSQPEYLITVRGFGYRF 249 >gi|160941449|ref|ZP_02088785.1| hypothetical protein CLOBOL_06341 [Clostridium bolteae ATCC BAA-613] gi|158435659|gb|EDP13426.1| hypothetical protein CLOBOL_06341 [Clostridium bolteae ATCC BAA-613] Length = 229 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 46/227 (20%), Positives = 86/227 (37%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G +E N D+ ++ L G Sbjct: 4 ILIVEDEESIAELEKDYLELSGFEVEIENDGSSGLDKALKEDYDLLILDLML--PGTDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 E+ + +R P+I +S + G DD + KP E++ARV A R Sbjct: 62 EICKRVREVKNTPIIMVSAKKEDIDKIRGLGLGADDYITKPFSPSEMVARVKAHMARYER 121 Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + +N E +++ R V GE +E +L +L N K ++F Sbjct: 122 LIGSGQPANELIEIRGLKIDKTARRVWVNGEEKTFTTKEFDLLTFLAQNPNHVFTKEELF 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 S I+ + + + V HI K+R+K+ N +++ +GY Sbjct: 182 SKIWDM-ESIGDIATVTVHIKKIREKIEFNTAKPQYIETIWGVGYRF 227 >gi|7144547|gb|AAA62132.2| orf246; ompR homolog [Rhodella violacea] Length = 247 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 42/229 (18%), Positives = 90/229 (39%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++ G ++ + E + ++ ++ Sbjct: 13 ILIVDDEASMRRLLEYRLSIIGYNVISASDGEEALNIFRKEHPNLIVLDIM--MPKLDGF 70 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV--------A 113 + + IR S +P+I ++ + + + G DD + KP +E+ AR+ Sbjct: 71 GVCQEIRKESDIPIIMLTGLGDIVDRITGLELGADDYLVKPFSPKELEARIKSVLRRSDR 130 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 ++ + G + + ++ R E L E +LE L++ G ++ I Sbjct: 131 MTVNSNIPTSGINQIGFLTIDTNRRQVYKNNERVRLTGIEFCLLELLISRAGSPFSRAVI 190 Query: 174 FSAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 ++G + ++ VV+ HIS+LR KL + D + + R GY Sbjct: 191 LQKVWGYTPERHIDTRVVDVHISRLRAKLEDDPSNPDLILTARGTGYLF 239 >gi|300818279|ref|ZP_07098490.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 107-1] gi|300529170|gb|EFK50232.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 107-1] Length = 229 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 39/224 (17%), Positives = 93/224 (41%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A +++ + +G + + D+ ++ L G + Sbjct: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWML--PGGSGI 62 Query: 62 ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 + + ++ S +P++ ++ + + ++G DD + KP +E++AR+ A+ RR Sbjct: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + E + + E + E ++L + M + + ++ Q+ + Sbjct: 123 ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNH 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + VE+ V+ HI +LRK L V + R GY Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALEPGEHDRMVQTVRGTGYRF 225 >gi|294497140|ref|YP_003560840.1| two-component response regulator [Bacillus megaterium QM B1551] gi|294347077|gb|ADE67406.1| two-component response regulator [Bacillus megaterium QM B1551] Length = 230 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 43/226 (19%), Positives = 89/226 (39%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G + D+ ++ L L Sbjct: 6 ILIVEDERKIARLIQLELEHEGYETGMAYTGTEGLAEFQEHDWDLLLLDVML--PELSGL 63 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R IRA+ P+I ++ +L + D G +D + KP E+ AR+ R Sbjct: 64 EVLRRIRANDDQTPVILLTARDALPDKVSGLDLGANDYITKPFQIEELFARIRVWLRHPA 123 Query: 121 VSNNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 ++ + R+ + E L +E +L Y++ N+ + ++ Q+ Sbjct: 124 STSPAEQETATLQLGNLVVNEKTREVTRENEAIELTPKEYDLLVYMLQNKNQVLSFEQLL 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + ++G FD + N+V +I LRKK+ + + R +GY + Sbjct: 184 TNVWG-FDYYGDTNIVYVYIRYLRKKIDAPFSTPYIQTVRGVGYML 228 >gi|269839879|ref|YP_003324572.1| transcriptional regulator [Thermobaculum terrenum ATCC BAA-798] gi|269791609|gb|ACZ43749.1| two component transcriptional regulator, winged helix family [Thermobaculum terrenum ATCC BAA-798] Length = 233 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 45/231 (19%), Positives = 94/231 (40%), Gaps = 17/231 (7%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L++D + + +G + + + L D+ ++ L LE Sbjct: 5 LLVEDESTLLTTIAYNLRREGYKVLTAENGKRALELA-EENPDIVVLDILL--PEIDGLE 61 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------------LA 110 + R +R S VP+I ++ + + G DD + KP RE+ L Sbjct: 62 VCRRLRQRSSVPIIMLTAKTDEVDRIVGLELGADDYLTKPFSMRELLARIKALLRRRSLI 121 Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 ++ + + +G + + + G+V L RE +L +L+ N+G + Sbjct: 122 MAEISSQQQESRRQKLVSGDLEIDPAMHQVKRGGKVIQLTPREFDLLTFLVMNKGIVFSA 181 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 ++ ++G +DEA++ V HI LR+K+ + +++ R +GY Sbjct: 182 ERLLEEVWG-YDEALDVRTVPVHIRNLREKIEDDPSDPKRIETVRGVGYRF 231 >gi|78058361|gb|ABB17540.1| VanRG2 [Enterococcus faecalis] Length = 232 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 47/231 (20%), Positives = 89/231 (38%), Gaps = 14/231 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +DG ++ F + S D+ ++ L Sbjct: 5 ILIVDDEKEIADLIEVYLKNDGYTVHKFYNGTDALKCIESQNLDLVILDVML--PDVDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + IR P+I ++ + G DD + KP + E++ARV RR Sbjct: 63 RICQKIREQYFYPIIMLTAKVEDTDKIMGLTIGADDYITKPFNPLEVVARVKTQLRRYVR 122 Query: 122 SNNRAETGPIRV----------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 N + + + G+ L E IL YL ++GK V+ Sbjct: 123 YNQPINKQALENIEYDIRGLSINKNNHKCSLFGKELQLTPIEFSILWYLCDHQGKVVSSE 182 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 ++F A++ N V +HI +LR+K++ + + +GY+I+ Sbjct: 183 ELFEAVWKEKYLD-NNNTVMAHIGRLREKMKEPAKKPKFIKTVWGVGYTIE 232 >gi|154687043|ref|YP_001422204.1| PhoP [Bacillus amyloliquefaciens FZB42] gi|154352894|gb|ABS74973.1| PhoP [Bacillus amyloliquefaciens FZB42] Length = 239 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 45/233 (19%), Positives = 98/233 (42%), Gaps = 15/233 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + G + + E L + D+ ++ L + Sbjct: 5 ILVVDDEQSIVTLLQYNLERSGYDVITASDGEEALELAENENPDLIVLDVML--PKVDGI 62 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI----- 115 ++ + +R + P++ ++ + + G DD + KP RE+ ARV AI Sbjct: 63 DVCKQLRQQKMMVPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVTARVKAILRRAD 122 Query: 116 -----YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 R + + + G +++ + + + E L +E +L YL ++G+ + + Sbjct: 123 ISSLSQGREEEKDGQILIGELKILPEHYEAYFKSEQLELTPKEFELLLYLGKHKGRVLTR 182 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDW 222 + SA++ +D A + +V+ HIS LR K+ + + + R LGY ++ Sbjct: 183 DLLLSAVW-NYDFAGDTRIVDVHISHLRDKIESNTKKPIYIKTIRGLGYKLEE 234 >gi|28493014|ref|NP_787175.1| two-component system response regulator [Tropheryma whipplei str. Twist] gi|28476054|gb|AAO44144.1| two-component system response regulator [Tropheryma whipplei str. Twist] Length = 251 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 43/222 (19%), Positives = 88/222 (39%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++D A G + + + D+ ++ L Sbjct: 30 ILVVDDEANIRDLLAASLRFAGYGVVTAGNGAGAVSAVLAEEPDLIIMDVML--PDMSGF 87 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPI--HHREILARVAAIYRR 118 + +R P+I +S S + + G DD V KP + Sbjct: 88 AATKRLREAGFRCPVIFLSARDSTEDKITGLTVGGDDYVTKPFSLDEILARVAAILRRTK 147 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + G + + + + ++G + L E ++L Y M N + ++K+QI ++ Sbjct: 148 IDDVDATIRVGDLVIDQNSNEVFLKGNLIDLSPTEFKLLRYFMLNPNRVLSKSQILGHVW 207 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D + ++VES+IS +R+KL + +KR GY + Sbjct: 208 D-YDFDGDSSIVESYISYIRRKLAAYSSETIIHTKRGFGYIM 248 >gi|47096094|ref|ZP_00233695.1| DNA-binding response regulator PhoP [Listeria monocytogenes str. 1/2a F6854] gi|258611481|ref|ZP_05232763.2| DNA-binding response regulator PhoP [Listeria monocytogenes FSL N3-165] gi|258612273|ref|ZP_05269478.2| DNA-binding response regulator PhoP [Listeria monocytogenes F6900] gi|293596673|ref|ZP_05263412.2| DNA-binding response regulator PhoP [Listeria monocytogenes J2818] gi|17351932|gb|AAL38202.1|AF319446_1 putative response regulator RR62 [Listeria monocytogenes] gi|47015555|gb|EAL06487.1| DNA-binding response regulator PhoP [Listeria monocytogenes str. 1/2a F6854] gi|258600460|gb|EEW13785.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL N3-165] gi|258610384|gb|EEW22992.1| DNA-binding response regulator PhoP [Listeria monocytogenes F6900] gi|293591406|gb|EFF99740.1| DNA-binding response regulator PhoP [Listeria monocytogenes J2818] Length = 240 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 47/233 (20%), Positives = 95/233 (40%), Gaps = 16/233 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A + G + L S + D+ ++ L + Sbjct: 8 ILVVDDEASIVTLLQFNIEKAGFEVVTAEDGRTGYELALSEKPDLIVLDLML--PEMDGI 65 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ + +R VP++ ++ + + G DD + KP RE++AR+ AI RR + Sbjct: 66 EVTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTE 125 Query: 121 VSNNRAETGPIR-----------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 E + D + +Q ++ L +E +L +L +RGK + Sbjct: 126 GKAEIIEELTEDVEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFS 185 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 + Q+ ++ +D E +V+ H+S LR K+ + + + R GY ++ Sbjct: 186 RDQLLDTVW-NYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKME 237 >gi|239816532|ref|YP_002945442.1| two component heavy metal response transcriptional regulator, winged helix family [Variovorax paradoxus S110] gi|239803109|gb|ACS20176.1| two component heavy metal response transcriptional regulator, winged helix family [Variovorax paradoxus S110] Length = 225 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 41/221 (18%), Positives = 92/221 (41%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + D ++G ++ +L + + ++ L G Sbjct: 3 ILVIEDEPKLGDYLKKGLEENGYVVDIARDGIEGRYLATEGDYALILLDVML--PGIDGF 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120 + + IR S VP++ ++ ++ ++ G DD + KP E+LAR+ A + R Sbjct: 61 AVLQAIRRTSNVPVLVLTARDKVEDRVNGLQQGADDYLVKPFSFSELLARIQALLRRGKP 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + + R L +E +L L+ RG+ ++++ + ++ Sbjct: 121 QESTVLRLADLELDLASRKCFRNRTRLDLTAKEFTLLVVLLRRRGQILSRSTLAEQVW-E 179 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + NVVE I +LR K+ + + + R +GY ++ Sbjct: 180 MNFDSDTNVVEVAIRRLRSKIDDPFEVKLLHTVRGMGYVLE 220 >gi|223935938|ref|ZP_03627853.1| two component transcriptional regulator, winged helix family [bacterium Ellin514] gi|223895539|gb|EEF61985.1| two component transcriptional regulator, winged helix family [bacterium Ellin514] Length = 224 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 45/221 (20%), Positives = 95/221 (42%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +++ + L S+ D ++ L G L Sbjct: 3 ILVVEDEKKTASFIRKALQAESFAVDVSHDGTEALLLASNTPFDAIVLDIML--PGRDGL 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119 + R +R P++ +S + ++ ++G DD + KP E++ARV +I R Sbjct: 61 SVLRQLRQQKNQTPVLLLSARGEVNERVEGLNAGADDYLPKPFALAELIARVRSIGRRSN 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + + + + + R + G F L RE R+LE+LM G+ + I ++ Sbjct: 121 EPKSVLLQVADLTLDTITRQAQRGGTSFELTTREYRLLEFLMRTPGRICGRMAILEKVWD 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D N+V+ +I +LR+K+ + + R +GY + Sbjct: 181 -YDFDPGTNLVDVYIKRLREKVDEGFEPKLLHTVRNVGYVM 220 >gi|323485055|ref|ZP_08090408.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridium symbiosum WAL-14163] gi|323693570|ref|ZP_08107773.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridium symbiosum WAL-14673] gi|323401611|gb|EGA93956.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridium symbiosum WAL-14163] gi|323502378|gb|EGB18237.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridium symbiosum WAL-14673] Length = 230 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 45/225 (20%), Positives = 90/225 (40%), Gaps = 12/225 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D +++ D G + R D+ ++ L Sbjct: 4 ILIIEDERDIEEFLRFFLEDSGYEVAVARDGLEGITAFQKDRYDLILLDIML--PKIDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116 + +IR S +P+I I+ S + + D DD + KP ++ + + Sbjct: 62 AVCELIRKESNIPVIMITALSSEEEQVRGLDLLADDYITKPFSMPVLIRKIAAVLRRSGR 121 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 N + + + D V GE L +RE IL L+ ++GK + + + Sbjct: 122 GAKAGENQKLIYRDLCLDLDNYQTFVDGEPVALTKREFEILRELLNHQGKVMTREILLEK 181 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ ++ + VV++HI LR+KL D +++ + +GY ID Sbjct: 182 LW-KYEFYGNDRVVDNHIKNLRRKLE----RDYIETVKGIGYRID 221 >gi|268610638|ref|ZP_06144365.1| two component transcriptional regulator [Ruminococcus flavefaciens FD-1] Length = 224 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 43/219 (19%), Positives = 90/219 (41%), Gaps = 3/219 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + +G + + N L D ++ L Sbjct: 4 ILLVEDDEQLAKILTRFLNSEGYATDYANGQRDALRLFEENAYDCILLDISLK--DGNGY 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + ++ +S P+I I+ T+ F+ G DD + KP RE+LAR+ + RR + Sbjct: 62 SVCAAVKKNSDTPVIFITASADEACTVAGFEIGADDYIGKPFGTRELLARMKNVMRRAQK 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 ++ G + + G + E R+L +N+ + +++ ++ ++ L Sbjct: 122 TSPLINCGNVTIDPIKGIIYKNGHELSMSALEYRMLLVFFSNKNQLLSRDRLAEELWSLT 181 Query: 182 DEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYS 219 E V +N + +I +LR+K+ + + + R LGY Sbjct: 182 KEFVSDNTLSVYIRRLREKIEDDPQDPKIIITVRGLGYK 220 >gi|257484069|ref|ZP_05638110.1| DNA-binding response regulator BaeS [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331008186|gb|EGH88243.1| DNA-binding response regulator BaeS [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 227 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 45/221 (20%), Positives = 84/221 (38%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + G S ++ + + ++ L G + Sbjct: 10 ILIVEDEPKLASLMRDYLIAAGYSTHCLSNGLEVVPAVRAQPPQLILLDIML--PGRDGM 67 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R +R+ S VP++ I+ L D G DD + KP RE + R Sbjct: 68 DICRELRSFSAVPIVMITARVEEIDRLLGLDLGADDYICKPFSPRE-MVARVKAILRRTS 126 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 S + + ++V G L E R+L + G+ ++ + +Y Sbjct: 127 STDPHTSKGLQVDEAHYQASFNGVSLDLTPVELRLLATFARSPGRVFSRDHLLDRLYSDH 186 Query: 182 DEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221 V + V+SHI LR+KL G DP+ S +GY ++ Sbjct: 187 -RVVTDRTVDSHIRNLRRKLEQACPGQDPIQSLYGVGYKLE 226 >gi|302543578|ref|ZP_07295920.1| DNA-binding response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302461196|gb|EFL24289.1| DNA-binding response regulator [Streptomyces himastatinicus ATCC 53653] Length = 246 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 43/229 (18%), Positives = 89/229 (38%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V++ +G + E + ++ ++ + L Sbjct: 13 ILIVDDEPAVREALQRSLAFEGYATETAVDGLDALEKAGTYDPELIVLDV--LMPRMDGL 70 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILAR 111 R +RA VP++ ++ ++ + D+G DD + KP E + Sbjct: 71 TAARRLRATGVTVPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELLARIRALLRRSS 130 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 AA ++ G +R+ R+ G L R E +LE +A+ + + + Sbjct: 131 YAAAAGAPFADDDTMSFGDLRMDLTTREVTRGGRRVELTRTEFTLLEMFLAHPRQVLTRE 190 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 QI A++G F+ N ++ ++ LR+K V + R +GY + Sbjct: 191 QILKAVWG-FEFEPSSNSLDVYVMYLRRKTEAAGEPRLVHTVRGVGYVL 238 >gi|225569383|ref|ZP_03778408.1| hypothetical protein CLOHYLEM_05467 [Clostridium hylemonae DSM 15053] gi|225161591|gb|EEG74210.1| hypothetical protein CLOHYLEM_05467 [Clostridium hylemonae DSM 15053] Length = 224 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 48/225 (21%), Positives = 96/225 (42%), Gaps = 8/225 (3%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEK 59 M ++D + +++ + G+ GF + ++ ++ L G G + Sbjct: 1 MIFCVEDDSNIRELVVYTLESTGMKARGFEDGREFLEALALETPELILLDIMLPGEDGME 60 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +L+ + ++P+I ++ + + DSG DD V KP E+++RV A+ RR Sbjct: 61 LLKRLKSSVKTREIPVIMVTAKGAEYDKVMGLDSGADDYVTKPFGMMELVSRVKAVLRRT 120 Query: 120 KVSNNRAETG----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + E I + + G L +E +L+ LM N + + Q+ Sbjct: 121 AKDDYKREDKIALGNIEIDIRKHEVRASGSTVNLTLKEYELLKRLMRNPNIVLTRDQLLE 180 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I+G +D E V+ H+ LR+KL +++ R +GY + Sbjct: 181 DIWG-YDFDGETRTVDVHVRTLRQKLGACGEK--IETVRGVGYKM 222 >gi|162451220|ref|YP_001613587.1| phosphate regulon transcriptional regulatory protein phoB [Sorangium cellulosum 'So ce 56'] gi|161161802|emb|CAN93107.1| Phosphate regulon transcriptional regulatory protein phoB [Sorangium cellulosum 'So ce 56'] Length = 231 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 46/222 (20%), Positives = 88/222 (39%), Gaps = 7/222 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61 ++++D ++ F G + S E R D+ ++ L G ++ Sbjct: 6 LIVEDERDLQRVLTYNFRQAGFDVVSAGSGETALRAVKEERFDLVLLDLMLPDMSGTEIC 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 + S VP+I ++ + F+ G DD V KP RE++ R Sbjct: 66 RRLKQNPQTSAVPVIMVTAKGEEIDRIVGFELGADDYVVKPFSVRELILRARAILKRSES 125 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + + G +RV VQ L E R+L L RG+ +++ + ++ Sbjct: 126 PASAPEKFDFGILRVDRAAHRAWVQEAEIALTALEFRLLMMLYDRRGRVLSRDLLLDEVW 185 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G V V++H+ ++R+KL D +++ R +GY Sbjct: 186 GSH-VDVTARNVDTHVKRVREKLGAAG--DYIETVRGVGYRF 224 >gi|126649989|ref|ZP_01722222.1| hypothetical protein BB14905_01925 [Bacillus sp. B14905] gi|126593161|gb|EAZ87123.1| hypothetical protein BB14905_01925 [Bacillus sp. B14905] Length = 228 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 46/229 (20%), Positives = 91/229 (39%), Gaps = 11/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D ++ ++ + + + D++ ++ Sbjct: 3 ILVVDDEKEIADLIELYLKNENYNVFKYYTAQEALACMEREGLDLAILDIM--MPHIDGF 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + IR P+I ++ ++ F G DD + KP E++ARV A RR + Sbjct: 61 TVLQKIRETYNFPVIMLTAKEEEIDKINGFSLGADDYITKPFRPLELIARVKAQLRRFTL 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF-------PLPRRERRILEYLMANRGKRVAKTQIF 174 N ++ + G L E IL YL +NRGK ++ ++F Sbjct: 121 YNQSSKPHENTIDFAGLMMNKNTRQVLLNERQLSLTPTEFSILWYLCSNRGKVISSEELF 180 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 I+G N V HI LR+K+++ + + + +GY+I+ Sbjct: 181 QEIWGEK-YFNSNNTVMVHIRHLREKMKDSVENPKFIKTVWGVGYTIEK 228 >gi|295398639|ref|ZP_06808664.1| response regulator [Aerococcus viridans ATCC 11563] gi|294973127|gb|EFG48929.1| response regulator [Aerococcus viridans ATCC 11563] Length = 238 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 53/230 (23%), Positives = 98/230 (42%), Gaps = 16/230 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D ++G ++ + +S + D+ ++ L L Sbjct: 4 ILIVDDEKPISDIISFNLKNEGYEIDTAYDGQQALEKFASFQPDLVVLDLML--PKIDGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 E+ R IR SQVP+I ++ S + + G DD V KP +RE++ARV A RR Sbjct: 62 EVCRQIRKDSQVPIIMLTAKDSEIDKVLGLELGADDYVTKPFSNRELMARVKANIRRTAV 121 Query: 120 ----------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 +N E G + + D GE L RE +L YL + + + Sbjct: 122 VAEPVVADEVTEKDNIIEIGDLLIHEDEYIASKNGEDVELTHREFELLHYLSQHINQVMT 181 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGY 218 + + ++G +D + V+ + +LR+K+ + ++R +GY Sbjct: 182 REHLLQTVWG-YDYFGDVRTVDVTVRRLREKIEENPSHPKILITRRGVGY 230 >gi|294619272|ref|ZP_06698744.1| regulatory protein VanR [Enterococcus faecium E1679] gi|291594492|gb|EFF25897.1| regulatory protein VanR [Enterococcus faecium E1679] Length = 233 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 49/232 (21%), Positives = 92/232 (39%), Gaps = 15/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L+DD + D +DG ++ F + D++ ++ L Sbjct: 5 ILLVDDEQEIADLIEVYLKNDGYEVQKFYLGQEALDYIERESFDLAVLDVML--PDIDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + IR + P+I ++ + G DD + KP + E++ARV RR + Sbjct: 63 KIVQKIRENHFFPVIMLTAKIEDIDKITGLTLGADDYITKPFNPLEVVARVKTQLRRFQK 122 Query: 122 SNNRAET-----------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 N + + + + + GE L E IL YL +G+ V Sbjct: 123 YNIQVDYSTEESIKEIDIHGLIINQTLHTCTLYGETISLTPLEFAILWYLAERKGEVVPA 182 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 Q+F A++G N V +HI +LR+KL+ + + +GY ++ Sbjct: 183 EQLFEAVWGEKFLD-NNNTVMAHIGRLREKLKEPTRKPKFIKTVWGVGYKVE 233 >gi|237730369|ref|ZP_04560850.1| transcriptional regulator PhoB [Citrobacter sp. 30_2] gi|226905908|gb|EEH91826.1| transcriptional regulator PhoB [Citrobacter sp. 30_2] Length = 229 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 39/222 (17%), Positives = 93/222 (41%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D A +++ + +G + + D+ ++ L G G + Sbjct: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLVLLDWMLPGGSGLQF 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ + +P++ ++ + + ++G DD + KP +E++AR+ A+ RR+ Sbjct: 65 IKHLKREAMTRDIPVMMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVLRRIS 124 Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 E + + E + E ++L + M + + ++ Q+ + ++ Sbjct: 125 PMAVEEVIEMQGLSLDPTSHRVMTGEEPLDMGPTEFKLLHFFMTHPERVYSREQLLNHVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G + VE+ V+ HI +LRK L + V + R GY Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALEHSGHDRMVQTVRGTGYRF 225 >gi|126652337|ref|ZP_01724513.1| two-component response regulator [Bacillus sp. B14905] gi|126590912|gb|EAZ85025.1| two-component response regulator [Bacillus sp. B14905] Length = 224 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 44/224 (19%), Positives = 97/224 (43%), Gaps = 6/224 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD A +++ +G + + + + S D+ ++ Sbjct: 4 ILVADDDANIRELVCLFLRKEGFATVEADDGKEALSIYHSTPVDLVVLDIM--MPTMDGW 61 Query: 62 ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L + + RA++++PL+ ++ + F+ G DD + KP E+ RV A+ +R + Sbjct: 62 TLCKELRRANAEIPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVKALLKRYR 121 Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + + G I + + LP +E +L L G+ + Q+ I+G Sbjct: 122 IGYSQTIKLGAITLDRQTYKIMTGTDTITLPLKEFELLYKLAETPGQVYTREQLIDQIWG 181 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 + D A + ++ HI +LR++ F +++ R LGY ++ + Sbjct: 182 I-DYAGDNRTIDVHIKRLRERFAMIADF-HIETIRGLGYRLEVD 223 >gi|300118891|ref|ZP_07056604.1| DNA-binding response regulator [Bacillus cereus SJ1] gi|298723736|gb|EFI64465.1| DNA-binding response regulator [Bacillus cereus SJ1] Length = 229 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 45/229 (19%), Positives = 88/229 (38%), Gaps = 11/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D + + + ++ +S E + D+ ++ L Sbjct: 4 ILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDYDLIILDIML--PKMNGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IRA +P++ +S + G DD + KP E++ARV A R + Sbjct: 62 EICKQIRAIKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121 Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + I + R + E +E +L + + + + + K Q+F Sbjct: 122 LLGNVSKQRDTLYIHGISIDQRARKVFINNEEIAFTTKEFDLLTFFVTHPNQVLNKEQLF 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 I+GL A + V HI KLR+K+ + +++ GY + Sbjct: 182 ERIWGLG-SAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRFNV 229 >gi|271962953|ref|YP_003337149.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270506128|gb|ACZ84406.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 225 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 47/219 (21%), Positives = 90/219 (41%), Gaps = 5/219 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD A + + + +G + + R D+ ++ L G ++ Sbjct: 6 LVVDDDAALAEMLGIVLRGEGFEPSFVSDGDKALDAFRDTRPDLVLLDLML--PGADGID 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IRA S VP++ ++ + +SG DD + KP +E++ARV A RR Sbjct: 64 VCRRIRAESGVPIVMLTAKSDTIDVVLGLESGADDYIVKPFKPKELVARVRARLRRTDEP 123 Query: 123 NNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + G I + G + E L E +L L + + + ++G + Sbjct: 124 TPEILQIGDITIDVAGHSVKRDEETINLTPLEFDLLVALARKPRQVFTREVLLEQVWG-Y 182 Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219 A + +V H+ +LR K+ + V + R +GY Sbjct: 183 RHAADTRLVNVHVQRLRAKIEKDPEHPEIVVTVRGVGYK 221 >gi|197301269|ref|ZP_03166355.1| hypothetical protein RUMLAC_00001 [Ruminococcus lactaris ATCC 29176] gi|197299658|gb|EDY34172.1| hypothetical protein RUMLAC_00001 [Ruminococcus lactaris ATCC 29176] Length = 225 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 41/222 (18%), Positives = 92/222 (41%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + ++ +G ++ + + D+S + ++ Sbjct: 6 ILVVDDESRMRKLVRDFLVREGYNVLEAEDGVEAMDIFYEEK-DISLLILDVMMPRMDGW 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV--NKPIHHREILARVAAIYRRL 119 ++ R IR S+VP+I ++ + L FD GVD+ + Sbjct: 65 QVCREIRESSKVPIIMLTARSEERDELQGFDLGVDEYISKPFSPKILVARVNAILRRTLG 124 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + E G I + ++ G+ L +E +L Y + NRG +++ +I + ++ Sbjct: 125 SDAGDVMEAGGITIDKAAHIVKIDGKPIELSYKEFELLTYFVENRGIALSREKILNNVW- 183 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +D + +++H+ KLR KL +K + + + +GY D Sbjct: 184 NYDYFGDARTIDTHVKKLRSKLGDKG--EYIRTIWGMGYKFD 223 >gi|291542818|emb|CBL15928.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus bromii L2-63] Length = 235 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 50/234 (21%), Positives = 93/234 (39%), Gaps = 16/234 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +DG ++ F + + + D++ ++ L Sbjct: 5 ILIVDDEKEIADLIEVYLKNDGYTVHKFYNGLDALECIETQKMDLAILDVML--PDIDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + IR P+I ++ + G DD + KP + E++ARV RR Sbjct: 63 RICQKIREQYFYPIIILTAKVEDTDKIMGLTIGADDYITKPFNPLEVVARVKTQLRRYVR 122 Query: 122 SNN------------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 NN + + + + + G+ L E IL YL NRGK ++ Sbjct: 123 YNNAANTEEKDTPIAEHDVRGLIINKNTHKCTLYGKEVTLTPIEFSILWYLCENRGKVIS 182 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDW 222 ++F I+G N V +HI +LR+KL + + +GY+I+ Sbjct: 183 SEELFENIWGEKFLD-NNNTVMAHIGRLREKLNEPAKKPKFIKTVWGVGYTIEK 235 >gi|160936855|ref|ZP_02084220.1| hypothetical protein CLOBOL_01744 [Clostridium bolteae ATCC BAA-613] gi|158440236|gb|EDP17982.1| hypothetical protein CLOBOL_01744 [Clostridium bolteae ATCC BAA-613] Length = 234 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 45/232 (19%), Positives = 84/232 (36%), Gaps = 14/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D DG + + + S + ++ G L Sbjct: 6 ILVVDDEKEIADLIEIYLVSDGYKVFKAENAAKGLEIISKEEVHLVLLDIM--MPGMNGL 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH----------HREILAR 111 E+ + IR ++ +P+I +S + + +G DD V KP + + Sbjct: 64 EMCKKIRENNNIPIIMLSAKSTDLDKILGLGTGADDYVVKPFNPLELTARVKSQLRRYTQ 123 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + + +NN + + D V E L E IL L +N GK + Sbjct: 124 LNPNSASKEKANNEITIKGMTINKDNHKVIVDDEEIKLTPIEFDILYLLASNPGKVFSTD 183 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 +IF ++ N V HI +LR K++ + + +GY I+ Sbjct: 184 EIFEKVWNEKVYEAN-NTVMVHIRRLRGKMKEDTRQNKIITTVWGVGYKIEK 234 >gi|146310528|ref|YP_001175602.1| transcriptional regulator PhoB [Enterobacter sp. 638] gi|145317404|gb|ABP59551.1| two component transcriptional regulator, winged helix family [Enterobacter sp. 638] Length = 229 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 39/224 (17%), Positives = 93/224 (41%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A +++ + +G + + D+ ++ L G L Sbjct: 5 ILVVEDEAPIREMVCFVLEQNGFQPIEAEDYDSAVNQLNEPWPDLILLDWML--PGGSGL 62 Query: 62 ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 + + I+ + +P++ ++ + + ++G DD + KP +E++AR+ A+ RR Sbjct: 63 QFIKHIKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + E + + + E ++L + M + + ++ Q+ + Sbjct: 123 ISPMAVEEVIEMQGLSLDPTSHRVMTGENPLDMGPTEFKLLHFFMTHPERVYSREQLLNN 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + VE+ V+ HI +LRK L + V + R GY Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALEHSGHDRMVQTVRGTGYRF 225 >gi|296101518|ref|YP_003611664.1| transcriptional regulator PhoB [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295055977|gb|ADF60715.1| transcriptional regulator PhoB [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 229 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 38/222 (17%), Positives = 91/222 (40%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D A +++ + +G + + D+ ++ L G G + Sbjct: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGLQF 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ + +P++ ++ + + ++G DD + KP +E++AR+ A+ RR+ Sbjct: 65 IKHLKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS 124 Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 E + + + E ++L + M + + ++ Q+ + ++ Sbjct: 125 PMAVEEVIEMQGLSLDPTSHRVMTGENPLDMGPTEFKLLHFFMTHPERVYSREQLLNNVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G + VE+ V+ HI +LRK L V + R GY Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALELSGHDRMVQTVRGTGYRF 225 >gi|257868062|ref|ZP_05647715.1| conserved hypothetical protein [Enterococcus casseliflavus EC30] gi|257874392|ref|ZP_05654045.1| conserved hypothetical protein [Enterococcus casseliflavus EC10] gi|257876951|ref|ZP_05656604.1| DNA binding response regulator [Enterococcus casseliflavus EC20] gi|257802145|gb|EEV31048.1| conserved hypothetical protein [Enterococcus casseliflavus EC30] gi|257808556|gb|EEV37378.1| conserved hypothetical protein [Enterococcus casseliflavus EC10] gi|257811117|gb|EEV39937.1| DNA binding response regulator [Enterococcus casseliflavus EC20] Length = 222 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 44/222 (19%), Positives = 87/222 (39%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ +G + ++ D+ ++ G+ Sbjct: 4 ILIVDDDTHMRALVKTYAEIEGYLCFEAADGKETLEKLTNHSFDLILLDVM--MPGKDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + IR P+I I+ L F+ G DD + KP +E++AR+ A+ +R Sbjct: 62 QTLSEIRGSCNTPVIMITARKEEYDKLFGFNLGADDYIAKPFSPKELMARIKAVLKRSSQ 121 Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 V + G PL +E +L YL N +++ I ++G Sbjct: 122 FQFEKIVFGDLEVNVFSHTVTINGNPLPLTPKEFDLLVYLTKNNHIALSRESILEGVWG- 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 FD + V++HI LR++L + + + + +GY D+ Sbjct: 181 FDYFGDTRTVDTHIKSLRERLGDY--RELIQTVWGVGYKFDY 220 >gi|170017613|ref|YP_001728532.1| response regulator [Leuconostoc citreum KM20] gi|169804470|gb|ACA83088.1| Response regulator [Leuconostoc citreum KM20] Length = 229 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 40/227 (17%), Positives = 92/227 (40%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + ++G + + + L D ++ L + Sbjct: 4 ILVVDDEIAISTLLKYNLEENGYDVTVASDGQTAYDLAKQESFDAILLDLML--PVIDGM 61 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILA------RVAA 114 L + +R P+I ++ + + G DD + KP RE++A R + Sbjct: 62 TLLKNLRQDKVSTPVILVTAKGDEFDRVFGLELGADDYITKPFSPREVVARVKAVLRRSQ 121 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + ++ ++ + + + + + ++ L RE +L Y G+ + + I Sbjct: 122 VDHQVVAESDVIKVQNVVIDDNKKVVTRDNQILTLTPREYELLLYFAHRIGRVIDRETIL 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 +A++G ++ E +V+ HIS LR+K+ N + + R GY++ Sbjct: 182 TAVWG-YEFTGESRMVDMHISNLREKIETNPKSPQLLKTVRGFGYTL 227 >gi|149908364|ref|ZP_01897027.1| DNA-binding response regulator BaeS [Moritella sp. PE36] gi|149808527|gb|EDM68462.1| DNA-binding response regulator BaeS [Moritella sp. PE36] Length = 226 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 43/220 (19%), Positives = 82/220 (37%), Gaps = 4/220 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + G ++ D+ ++ L L Sbjct: 8 ILVVEDEPSLAIVLCEYLAQAGFQTHIIDNGLEVIDWVKQKHPDLLILDLML--PNRDGL 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R +R SQVP++ + L + G DD + KP RE++AR+ + RR Sbjct: 66 DIYRELRTFSQVPVVMATARVDEIDRLLGLELGADDYICKPYSPREVVARIKNVLRRTVE 125 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + + L E R+L + + G+ + Q+ IY Sbjct: 126 VAASSPQHGLTINDKQMKATFDSNELTLTPAEFRLLSFFNHHPGQVFNRDQLMQEIY-AD 184 Query: 182 DEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 V + ++SHI LRKKL++ + + S +GY Sbjct: 185 HRLVTDRTIDSHIKNLRKKLQDVAPDNEYIKSIYGVGYRF 224 >gi|186472789|ref|YP_001860131.1| two component heavy metal response transcriptional regulator [Burkholderia phymatum STM815] gi|184195121|gb|ACC73085.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia phymatum STM815] Length = 225 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 47/221 (21%), Positives = 90/221 (40%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + G S+E N L DV ++ L Sbjct: 3 ILVIEDEPKTAAYLKKGLEESGYSVEVANDGSHGLILAQEEDYDVIILDVML--PWMDGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120 + + +RA P++ ++ + + + G DD + KP E+LARV R Sbjct: 61 TVVKTLRATRATPVLFLTARDDVNDRVRGLELGADDYLVKPFAFVELLARVRTLARRGPP 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + G + + + R + L RE +L+ L G+ +++TQI S ++ + Sbjct: 121 RESELIRIGDLEMDINRRRVKRGTMRIDLTPREFSLLQLLARRHGEVLSRTQIASYVWDM 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + NVVE I +LR K+ + + + R +GY ++ Sbjct: 181 -NFDSDTNVVEVAIRRLRSKVDDNFPVKLIHTVRGVGYVLE 220 >gi|293392590|ref|ZP_06636910.1| phosphate regulon response regulator [Serratia odorifera DSM 4582] gi|291424992|gb|EFE98201.1| phosphate regulon response regulator [Serratia odorifera DSM 4582] Length = 229 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 38/224 (16%), Positives = 90/224 (40%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A +++ + +G + S D+ ++ L G + Sbjct: 5 ILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRLSEPFPDLVLLDWML--PGGSGI 62 Query: 62 ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 + + ++ +P++ ++ + + + G DD + KP +E++AR+ A+ RR Sbjct: 63 QFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRR 122 Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + E + + + E ++L + M + + ++ Q+ + Sbjct: 123 ISPMAVEEVIEMQGLSLDPSSHRVMANELALDMGPTEFKLLHFFMTHPERVYSREQLLNH 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + VE+ V+ HI +LRK L V + R GY Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALETSGHDKMVQTVRGTGYRF 225 >gi|258425096|ref|ZP_05687967.1| two component response regulator [Staphylococcus aureus A9635] gi|257844930|gb|EEV68973.1| two component response regulator [Staphylococcus aureus A9635] Length = 224 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 49/220 (22%), Positives = 98/220 (44%), Gaps = 4/220 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + + + + S E L R D+ ++ G + Sbjct: 5 LVVDDDPRILNYIASHLQTEHIDAYTQPSGEAALKLLEKQRVDIVVVDIM--MDGMDGFQ 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L ++ +P+I ++ +L F SG DD V KP +E++ R+ A+ RR ++ Sbjct: 63 LCNTLKNDYDIPVIMLTARDALSDKERAFISGTDDYVTKPFEVKELIFRIRAVLRRYNIN 122 Query: 123 NNRAETGPIRVFSDGR-DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 +N T + + +V + LP +E ++L L A + + QI I+G + Sbjct: 123 SNSEMTIGNLTLNQSYLELQVSNKTMTLPNKEFQLLFMLAARPKQIFTREQIIEKIWG-Y 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D +E V+ HI +LR++L+ +++ R GY ++ Sbjct: 182 DYEGDERTVDVHIKRLRQRLKKLNATLTIETVRGQGYKVE 221 >gi|164688214|ref|ZP_02212242.1| hypothetical protein CLOBAR_01859 [Clostridium bartlettii DSM 16795] gi|164602627|gb|EDQ96092.1| hypothetical protein CLOBAR_01859 [Clostridium bartlettii DSM 16795] Length = 237 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 48/230 (20%), Positives = 89/230 (38%), Gaps = 12/230 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD ++D ++G + + + EDV + ++ + Sbjct: 11 ILVADDEKEIRDLLEIYLLNEGYKVVKAKDGQEALDII--ENEDVDLLVLDIMMPKVNGI 68 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + +R + +P++ +S + +G DD + KP + E RV A+ RR Sbjct: 69 EVCKKVRQNKNMPILMLSAKSEDMDKIQGLMTGADDYMTKPFNPLEFTVRVKALLRRSYY 128 Query: 122 SNNRAETGPIR--------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 NN + + GE L RE IL + +N+G+ + +I Sbjct: 129 LNNNNSSEESDLINVGSLTIDKTRHRVVADGEEISLTAREFDILYLMASNKGRVFSSEEI 188 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222 F ++ N V HIS+LR KL G + + +GY I+ Sbjct: 189 FEKVWKEK-YFQSNNTVMVHISRLRDKLDKHLNGEKIIHTVWGVGYKIEK 237 >gi|326383061|ref|ZP_08204750.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395] gi|326198197|gb|EGD55382.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395] Length = 229 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 56/227 (24%), Positives = 100/227 (44%), Gaps = 11/227 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + D L +G N D+ ++ L G E Sbjct: 5 LIVEDEESLADPLAFLLRKEGFEASIVNDGSEAVSTFERVNPDIVLLDLML--PGVSGTE 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + IRA S VP+I ++ S + + G DD V KP RE++AR+ A+ RR V Sbjct: 63 ICKTIRAKSAVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGVV 122 Query: 123 NNRAE-------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + GP+R+ V G LP +E +LEYL+ N G+ + ++Q+ Sbjct: 123 ADDEDAAIGVVEVGPVRMDVQRHTVTVAGTEVTLPLKEFDLLEYLLRNSGRVLTRSQLID 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 ++G D + ++ H+ +LR K+ + + + R LGY + Sbjct: 183 RVWGA-DYVGDTKTLDVHVKRLRSKVEPDPSQPRHLITVRGLGYKFE 228 >gi|239929290|ref|ZP_04686243.1| transcriptional regulatory protein [Streptomyces ghanaensis ATCC 14672] Length = 221 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 51/221 (23%), Positives = 95/221 (42%), Gaps = 5/221 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +LI+D ++ G + S E L R D+ ++ L G E Sbjct: 1 MLIEDDDAIRTALELSLTRQGHRVATAASGEDGLKLLREQRPDLIVLDVML--PGIDGFE 58 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLKV 121 + R IR Q+P+I ++ + +SG DD V KP+ R + AR+ A+ R + Sbjct: 59 VCRRIRRTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGERE 118 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 S++ A G + + GE L E R+L L G+ +++ Q+ ++ Sbjct: 119 SSDSASFGSLVIDRAAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVW-EH 177 Query: 182 DEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 D + +V++ + +LR K+ + + + R +GY +D Sbjct: 178 DYLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRLD 218 >gi|332705648|ref|ZP_08425724.1| two-component response regulator, CheY subfamily [Lyngbya majuscula 3L] gi|332355440|gb|EGJ34904.1| two-component response regulator, CheY subfamily [Lyngbya majuscula 3L] Length = 656 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 40/222 (18%), Positives = 88/222 (39%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + A ++ + L + D+ ++ L + Sbjct: 3 ILLVEDDEGIAKVVTAALASQHYQVDLATDGDEGIALAEILKYDLILLDWML--PKLTGI 60 Query: 62 ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP-IHHREILARVAAIYRRL 119 +L + + A + P+I ++ + ++ D+G DD + KP + A + R Sbjct: 61 DLCKQLRNARDRTPIILLTAQDTSTNKVEALDAGADDYLVKPLDIPELLARIRAVLRRSS 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 E G + + E+ L +E ++E + N + +++ + ++ Sbjct: 121 TPLLPVLEWGLLHLDPSNCQVSYDQELLHLTPKEYGLVELFLRNPHRIFSQSFLLDNLWS 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220 F+E EN V +HI LR+KL+ D +++ LGY + Sbjct: 181 -FEEPPTENAVRAHIKSLRRKLKQAGAKNDLIETVYGLGYRL 221 Score = 66.6 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 19/102 (18%), Positives = 40/102 (39%), Gaps = 1/102 (0%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +++DD + D + G L N + D+ ++ + G + Sbjct: 525 LLIVDDDPQILDQLRTVLEPWGFQLTLLNDPQQFWETIEQCTPDLLILDVQMPEFSGIDL 584 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102 ++ R +++P++ +S +T F +G DD V KP Sbjct: 585 CQVVRNDPRWAELPVLFLSAAQDAETVQQVFMAGADDYVQKP 626 Score = 64.3 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 10/66 (15%), Positives = 22/66 (33%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + G + + +E + + R DV ++ L Sbjct: 400 LLIVDDDLTLAQGLASELAAWKMEVEVAADISQARKAIARNRPDVVLLDLCFPDSAGNGL 459 Query: 62 ELPRII 67 EL + Sbjct: 460 ELLAEL 465 >gi|317492787|ref|ZP_07951211.1| phosphate regulon transcriptional regulatory protein PhoB [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918909|gb|EFV40244.1| phosphate regulon transcriptional regulatory protein PhoB [Enterobacteriaceae bacterium 9_2_54FAA] Length = 229 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 37/224 (16%), Positives = 89/224 (39%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A +++ + +G + S D+ ++ L G + Sbjct: 5 ILVVEDEAPIREMVCFVLEQNGYQPVEAEDYDSAVNSLSEPYPDLVLLDWML--PGGSGI 62 Query: 62 ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 + + ++ ++P++ ++ + + + G DD + KP +E++AR+ A+ RR Sbjct: 63 QFIKHMKREALTREIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRR 122 Query: 119 LKVSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + + E ++L + M + + ++ Q+ + Sbjct: 123 ISPMAVEEVIEVQGLSLDPTSHRVMANEAPLDMGPTEFKLLHFFMTHPERVYSREQLLNH 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + VE+ V+ HI +LRK L V + R GY Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALELSGHDKMVQTVRGTGYRF 225 >gi|89896369|ref|YP_519856.1| hypothetical protein DSY3623 [Desulfitobacterium hafniense Y51] gi|219667803|ref|YP_002458238.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|89335817|dbj|BAE85412.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219538063|gb|ACL19802.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 230 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 43/225 (19%), Positives = 87/225 (38%), Gaps = 7/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD+ ++ + A +G + E D+ ++ + Sbjct: 7 ILICDDQLIIHETIAAYLKAEGFTYGSAYDGEEALQKAYETAPDLIILDLM--MPKLSGM 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R + VP+I ++ + + G DD + KP RE++ARV + RR Sbjct: 65 EVCRTLRKTTDVPIIMLTAKGEEIDKILGLELGADDYIVKPFSPREVVARVKTVLRRKLP 124 Query: 122 SNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + E + + G +E +L L A+ G+ + QI + Sbjct: 125 QSKDTEPILKYDGLEINISSYELRLNGTPVSCTPKEVEVLYLLAAHPGQVFNREQIIQNV 184 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +G D + V++ I ++R+KL + + S +GY + Sbjct: 185 WG-SDYFGDTRSVDTQIKRIRQKLAGEKMKWGIKSIYGVGYKFEV 228 >gi|308176319|ref|YP_003915725.1| two-component system response regulator [Arthrobacter arilaitensis Re117] gi|307743782|emb|CBT74754.1| two-component system response regulator [Arthrobacter arilaitensis Re117] Length = 226 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 49/224 (21%), Positives = 95/224 (42%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + D L +G + + D+ ++ L G+ Sbjct: 4 ILIVEDEESLSDPLSYLLEREGFEVRIADDGLKAVTEFERHGADLVLLDLML--PGQPGT 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117 E+ R IR +SQVP+I ++ S + + G DD V KP R I A + Sbjct: 62 EVIRQIRLNSQVPVIMLTAKDSEIDKVVGLELGADDYVTKPYSSRELLARIRAVLRRQGE 121 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 ++ +N GP+R+ + V+ +P +E +LE L+ N G+ + + Q+ + Sbjct: 122 GEELISNVVTAGPVRMDVERHVVSVENTEVSMPLKEFELLEMLLRNAGRVLTRGQLIDRV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 +G D + ++ H+ +LR K+ + + + R LGY Sbjct: 182 WG-SDYVGDTKTLDVHVKRLRSKIEADPAVPERLVTVRGLGYKF 224 >gi|307265495|ref|ZP_07547050.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter wiegelii Rt8.B1] gi|306919449|gb|EFN49668.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter wiegelii Rt8.B1] Length = 225 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 49/224 (21%), Positives = 89/224 (39%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD + G ++G ++ E D+ ++ L Sbjct: 4 LLIIDDEEMFVKGLKLSLEEEGFEVDTAYDGEEGLDKVRLGNYDLVILDIML--PKLDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYR 117 + R IR S +P+I ++ + + G DD + KP + RE++AR+ Sbjct: 62 SVCREIRTFSNIPIIMLTARGDDIDKIVGIEIGADDYLAKPFNTRELIARIRALLRRATN 121 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + G + + R +G+ L +E IL L +N GK K ++ I Sbjct: 122 PYTKRKDEIRRGELYINIPERAVYKRGKRIELTNKEFEILVLLASNPGKVYTKDKLLDLI 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 +G FD + N V H+ KLR+K+ + + +K GY + Sbjct: 182 WG-FDFYGDTNTVTVHVRKLREKIEDDPANPQYIFTKWGAGYYM 224 >gi|255325465|ref|ZP_05366569.1| transcriptional activator protein CopR [Corynebacterium tuberculostearicum SK141] gi|255297551|gb|EET76864.1| transcriptional activator protein CopR [Corynebacterium tuberculostearicum SK141] Length = 232 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 42/232 (18%), Positives = 90/232 (38%), Gaps = 13/232 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V++ +G + N + ++ ++ L Sbjct: 3 ILVVDDEQAVRESLRRSLRFNGYEVLTANDGLEAVETVRAENPELLILDVM--MPNMDGL 60 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPI--------HHREILARV 112 E+ R +R+ P++ ++ + + D+G DD + KP + Sbjct: 61 EVCRTLRSEGWDRPILVLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLVRRAS 120 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 A ++ + + +D R+ G L R E +L+ LM N K +++++ Sbjct: 121 ADSIAAEAPVESKLSFEDLELDADTREVSRGGRAISLTRTEFALLQLLMENPRKVLSRSK 180 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI-DWN 223 I ++G +D N +E +I LRKK + + + R +GY + + N Sbjct: 181 ILEEVWG-YDFPTSGNALEVYIGYLRKKTEGESDARLIHTVRGVGYVLRESN 231 >gi|145225290|ref|YP_001135968.1| two component transcriptional regulator [Mycobacterium gilvum PYR-GCK] gi|315445587|ref|YP_004078466.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Mycobacterium sp. Spyr1] gi|145217776|gb|ABP47180.1| two component transcriptional regulator, winged helix family [Mycobacterium gilvum PYR-GCK] gi|315263890|gb|ADU00632.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Mycobacterium sp. Spyr1] Length = 228 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 44/220 (20%), Positives = 86/220 (39%), Gaps = 5/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + +G R D+ ++ L G + Sbjct: 8 ILVVDDDPSLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDLML--PGMNGI 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R++RA S VP++ ++ + +SG DD V KP +E++ARV A RR + Sbjct: 66 DVCRVLRADSGVPIVMLTAKTDTVDVVLGLESGADDYVMKPFKPKELVARVRARLRRNED 125 Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + QGE L E +L L + + + ++G Sbjct: 126 EPAEMLSIADVDIDVPAHKVTRQGEQISLTPLEFDLLVALARKPRQVFTRDVLLEQVWG- 184 Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219 + + +V H+ +LR K+ + V + R +GY Sbjct: 185 YRHPADTRLVNVHVQRLRAKVEKDPENPQVVLTVRGVGYK 224 >gi|291541902|emb|CBL15012.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus bromii L2-63] Length = 227 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 44/227 (19%), Positives = 90/227 (39%), Gaps = 12/227 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++ +G +E + D+ ++ Sbjct: 4 ILVVDDEARIRQIIRKYAEFEGFEVEEAVDGMQAIEICRKEDFDLIIMDVM--MPELDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 R IR + P+I +S + F+ G DD V KP +E++ RV A+ +R + Sbjct: 62 SACREIRKFKKTPIIMLSARGEEYDKIHGFELGSDDYVVKPFSPKELMMRVNAVIKRSQG 121 Query: 122 SNNRAETGPIRV-------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + N R + G+ + +E + Y++ N+G + + ++ Sbjct: 122 AQNEENVKKDVFTYEGLSVDFSARIVTIDGKRIEMTPKEYELFFYMVKNKGLALTREKLI 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 S ++G +D +E +++HI LRK L + + R +GY + Sbjct: 182 SEVWG-YDFFGDERTLDTHIKLLRKSLGEYS--RCIVTLRGVGYRFE 225 >gi|322834089|ref|YP_004214116.1| two component transcriptional regulator PhoB, winged helix family [Rahnella sp. Y9602] gi|321169290|gb|ADW74989.1| two component transcriptional regulator PhoB, winged helix family [Rahnella sp. Y9602] Length = 229 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 35/222 (15%), Positives = 91/222 (40%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++++D A +++ + +G + ++ ++ L G G + Sbjct: 5 ILVVEDEAPIREMVCFVLEQNGYQAVEAEDFDSAIGQLVEPYPELILLDWMLPGGSGIQF 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ + ++P++ ++ + + + G DD + KP +E++AR+ A+ RR+ Sbjct: 65 IKHLKREALTREIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRRIS 124 Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + + + + E ++L + M + + ++ Q+ + ++ Sbjct: 125 PMAVEEVIDMQGLSLDPSSHRVMANEQALDMGPTEFKLLHFFMTHSERVYSREQLLNNVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G + VE+ V+ HI +LRK L + + R GY Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALETSGHDRMIQTVRGTGYRF 225 >gi|239928972|ref|ZP_04685925.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291437309|ref|ZP_06576699.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291340204|gb|EFE67160.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 246 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 47/227 (20%), Positives = 94/227 (41%), Gaps = 15/227 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D A + D +G ++ + + D+ ++ L G LE Sbjct: 23 LVVEDDATIVDAIATRLRAEGFLVQTAGDGPSAVDTAEAWQPDLLILDVML--PGFDGLE 80 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R ++A VP++ ++ L G DD + KP RE+ ARV + RR++ + Sbjct: 81 VCRRVQAQRPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRMERA 140 Query: 123 NNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 A T + R V+ E L E +L L +++ Q+ Sbjct: 141 ALAATTPRNGILRLGELEIDHAQRRVRVRSEDVHLTPTEFDLLVCLANTPRAVLSREQLL 200 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + ++ D + V+SHI LR+K+ G + + + +GY+++ Sbjct: 201 AEVWDWADASG-TRTVDSHIKALRRKI----GAERIRTVHGVGYALE 242 >gi|116873865|ref|YP_850646.1| DNA-binding response regulator [Listeria welshimeri serovar 6b str. SLCC5334] gi|116742743|emb|CAK21867.1| DNA-binding response regulator [Listeria welshimeri serovar 6b str. SLCC5334] Length = 236 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 47/233 (20%), Positives = 96/233 (41%), Gaps = 16/233 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A + G + + L S + D+ ++ L + Sbjct: 4 ILVVDDEASIVTLLQFNIEKAGFDVVTAEDGKTGYELALSEKPDLIVLDLML--PEMDGI 61 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ + +R VP++ ++ + + G DD + KP RE++AR+ AI RR + Sbjct: 62 EVTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTE 121 Query: 121 VSNNRAETGPIRV-----------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 E + D + +Q ++ L +E +L +L +RGK + Sbjct: 122 GKAESIEEKTEDMEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFS 181 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 + Q+ ++ +D E +V+ H+S LR K+ + + + R GY ++ Sbjct: 182 RDQLLDTVW-NYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKME 233 >gi|50120049|ref|YP_049216.1| phosphate regulon response regulator [Pectobacterium atrosepticum SCRI1043] gi|227113361|ref|ZP_03827017.1| phosphate regulon response regulator [Pectobacterium carotovorum subsp. brasiliensis PBR1692] gi|227327489|ref|ZP_03831513.1| phosphate regulon response regulator [Pectobacterium carotovorum subsp. carotovorum WPP14] gi|253687403|ref|YP_003016593.1| two component transcriptional regulator PhoB, winged helix family [Pectobacterium carotovorum subsp. carotovorum PC1] gi|261822544|ref|YP_003260650.1| two component transcriptional regulator PhoB, winged helix family [Pectobacterium wasabiae WPP163] gi|49610575|emb|CAG74020.1| phosphate regulon response regulator [Pectobacterium atrosepticum SCRI1043] gi|251753981|gb|ACT12057.1| two component transcriptional regulator PhoB, winged helix family [Pectobacterium carotovorum subsp. carotovorum PC1] gi|261606557|gb|ACX89043.1| two component transcriptional regulator PhoB, winged helix family [Pectobacterium wasabiae WPP163] Length = 229 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 38/224 (16%), Positives = 91/224 (40%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A +++ + +G + S ++ ++ L G L Sbjct: 5 ILVVEDEAPIREMVCFVLEQNGYQPVEAEDYDSAVTQLSEPFPELVLLDWML--PGGSGL 62 Query: 62 ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 + + ++ +P++ ++ + + + G DD + KP +E++AR+ A+ RR Sbjct: 63 QFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRR 122 Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + E + + + + E ++L + M + + ++ Q+ + Sbjct: 123 ISPMAVEEVIEMRGLSLDPSSHRVTTEEHALDMGPTEFKLLHFFMTHPERVYSREQLLNH 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + VE+ V+ HI +LRK L V + R GY Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALETSGHDKMVQTVRGTGYRF 225 >gi|325570561|ref|ZP_08146287.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC 12755] gi|325156407|gb|EGC68587.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC 12755] Length = 222 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 44/222 (19%), Positives = 89/222 (40%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ +G + + ++ D+ ++ G+ Sbjct: 4 ILIVDDDTHMRALVKTYAEIEGYLCFEASDGKETLEKLTNHSFDLILLDVM--MPGKDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + IR P+I I+ L F+ G DD + KP +E++AR+ A+ +R Sbjct: 62 QTLSEIRGSCNTPVIMITARKEEYDKLFGFNLGADDYIAKPFSPKELMARIKAVLKRSSQ 121 Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 V ++G PL +E +L YL N +++ I ++G Sbjct: 122 FQFEKIVYGDLEVNVFSHTVTIKGNPLPLTPKEFDLLVYLTKNNHIALSRESILEGVWG- 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 FD + V++HI LR++L + + + + +GY D+ Sbjct: 181 FDYFGDTRTVDTHIKSLRERLGDY--RELIQTVWGVGYKFDY 220 >gi|297625282|ref|YP_003687045.1| two-component response regulator [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296921047|emb|CBL55585.1| two-component response regulator [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 231 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 49/225 (21%), Positives = 97/225 (43%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA-REDVSAIEAFLIGKGEKV 60 +++DD V+D G +E S+ D ++ Sbjct: 5 ILVVDDDQAVRDSLARSLHYSGYEVETAEDGLEALAKLSTNLHPDAVVMDVM--MPRLDG 62 Query: 61 LELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LE +++RA+ P++ ++ ++ +D D+G DD + KP E+LAR+ A+ RR Sbjct: 63 LETTKMLRANGNDVPILVLTARDAVGDRVDGLDAGADDYMVKPFSLEELLARLRALTRRS 122 Query: 120 KVSNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + +A + + R+ G L R E +L+ M + GK + ++ + + Sbjct: 123 RPESQQANEVLSFADMTLDPQTREVTRGGRRISLTRTEFALLQTFMEHPGKVLDRSWLLN 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G FD N +E +I LR+K + + + R +GY + Sbjct: 183 EVWG-FDFPATANSLEVYIGYLRRKTEQEGEPRLIHTVRGVGYVL 226 >gi|295113087|emb|CBL31724.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Enterococcus sp. 7L76] Length = 236 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 47/230 (20%), Positives = 91/230 (39%), Gaps = 15/230 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + +G + + + L S + D ++ L G LE Sbjct: 5 LVVDDEPSILTLLTFNLEKEGYQVTTSENGKNGFELALSNQYDFIILDVML--PGMDGLE 62 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + +R P++ ++ + + G DD + KP RE+LAR+ AI+RRLK Sbjct: 63 ITKALRREKIDTPILILTAKDEQVDKIIGLEIGADDYLTKPFSPREVLARMKAIFRRLKP 122 Query: 122 SNNRAETGPIRV----------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + + V+ + L +E +L Y M + + + + Sbjct: 123 TTTETLQEDTPKAPLVIGEIRVDEQNYEVFVRNQPIELTPKEFELLVYFMKRKDRVINRE 182 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + I+ +D A + +V+ HIS LR K+ + + + R GY Sbjct: 183 NLLERIW-QYDFAGQSRIVDVHISHLRDKIEPDPKRPVYLVTVRGFGYRF 231 >gi|49477046|ref|YP_035262.1| two-component response regulator; MrsR2 protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52144318|ref|YP_082509.1| response regulator [Bacillus cereus E33L] gi|49328602|gb|AAT59248.1| probable two-component response regulator; probable MrsR2 protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51977787|gb|AAU19337.1| response regulator [Bacillus cereus E33L] Length = 240 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 38/225 (16%), Positives = 89/225 (39%), Gaps = 8/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +++DD + + A+ +G + + + + + D+ ++ L Sbjct: 13 ILIVDDEKEILNLLEAVLKKEGFRHIYTCTTGKGGIHMCRQVQPDLILLDIML--PDLDG 70 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR---EILARVAAIYR 117 + IR + VP+ +S + G DD + KP + + + Sbjct: 71 YSVCEQIRQFTFVPIFFLSAKNEDLDKILGLSIGGDDYITKPFSPKEVAYKMKAFFRRNQ 130 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + N + G I + G + L +E IL +L+ N + +K +++ A+ Sbjct: 131 YKEKNPNMYQFGDITIDEAQGTVLRAGTLLTLTAKEFNILLFLIKNPNQIFSKARLYEAV 190 Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 +G +N++ H+ LR+K+ + + + + R LGY ++ Sbjct: 191 WGET-YLGNDNIMMVHMRHLREKIEDNPSKPNYLITVRGLGYKLN 234 >gi|75760136|ref|ZP_00740196.1| Two-component response regulator vanRB [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218900181|ref|YP_002448592.1| DNA-binding response regulator [Bacillus cereus G9842] gi|74492373|gb|EAO55529.1| Two-component response regulator vanRB [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218540655|gb|ACK93049.1| DNA-binding response regulator [Bacillus cereus G9842] Length = 221 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 44/224 (19%), Positives = 99/224 (44%), Gaps = 11/224 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D +++ +++ + L D+ ++ L Sbjct: 4 ILVIEDNPDIQELIREFLMAQNFTVDVVGAGTEGILLFQKNSYDLVLLDVML--PDIDGY 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYR 117 + +I+R S VP+I ++ + ++ + F+ G+DD + KP H+ + RV Sbjct: 62 SICKIMRGQSDVPIIMLTGLHNEESEIKGFELGIDDYITKPFHYTVFIKRVEAVLRRAAT 121 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + + + + S V G L +E I+ L+ NRGK ++++ + + + Sbjct: 122 KEAEAATILQFHELMLNSTAYAAYVHGNQIELTTKEFEIIYTLLQNRGKVLSRSDLLNKV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +G ++ + V+++HI LRKKL G + + + +GY I+ Sbjct: 182 WG-YEHYGDVRVIDTHIKNLRKKL----GITYIKTVKGIGYKIE 220 >gi|320324367|gb|EFW80446.1| DNA-binding response regulator BaeS [Pseudomonas syringae pv. glycinea str. B076] gi|320328510|gb|EFW84512.1| DNA-binding response regulator BaeS [Pseudomonas syringae pv. glycinea str. race 4] Length = 227 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 45/221 (20%), Positives = 83/221 (37%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + G S ++ + + ++ L G + Sbjct: 10 ILIVEDEPKLASLMRDYLIAAGYSTHCLSNGLEVVPAVRAQPPQLILLDIML--PGRDGM 67 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R +R+ S VP++ I+ L D G DD + KP RE + R Sbjct: 68 DICRELRSFSAVPIVMITARVEEIDRLLGLDLGADDYICKPFSPRE-MVARVKAILRRTS 126 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 S + ++V G L E R+L + G+ ++ + +Y Sbjct: 127 STDPHTPKVLQVDEAHYQASFNGVSLDLTPVELRLLATFARSPGRVFSRDHLLDRLYSDH 186 Query: 182 DEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221 V + V+SHI LR+KL G DP+ S +GY ++ Sbjct: 187 -RVVTDRTVDSHIRNLRRKLEQACPGQDPIQSLYGVGYKLE 226 >gi|284993057|ref|YP_003411611.1| winged helix family two component transcriptional regulator [Geodermatophilus obscurus DSM 43160] gi|284066302|gb|ADB77240.1| two component transcriptional regulator, winged helix family [Geodermatophilus obscurus DSM 43160] Length = 220 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 49/220 (22%), Positives = 94/220 (42%), Gaps = 9/220 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++ +D A + +G + +S D+ ++ L G E Sbjct: 5 LIAEDEARIAAFVEKGLRANGFATAVVADGRTARAAAASGDFDLMILDIGL--PGMDGFE 62 Query: 63 LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R +RA +P++ ++ S+Q T+ + G DD + KP E+LARV + Sbjct: 63 VLRALRADRVTIPVVILTARDSVQDTVAALEGGADDYMPKPFRFEELLARVRLRLSGGRQ 122 Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + T + R + L RE + E + + G+ +A+ Q+ S ++G Sbjct: 123 TETTVLTCGDLSLDLRTRRAQAGSRTVALSAREFALAETFLRHPGQVLAREQLLSHVWG- 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D NVV+ ++ LR+KL G D +++ R +GY + Sbjct: 182 YDFDPGSNVVDVYVRYLRRKL----GADRIETVRGMGYRL 217 >gi|205375565|ref|ZP_03228353.1| YycF [Bacillus coahuilensis m4-4] Length = 236 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 46/229 (20%), Positives = 93/229 (40%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G ++ E + + D+ ++ L + Sbjct: 5 ILVVDDEKPIADILQFNLKKEGYTVYCAYDGEEAIKMAEEVQPDMILLDIML--PKRDGM 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R ++P+I ++ S + + G DD V KP RE++ARV A RR + Sbjct: 63 EVCRELRKKYEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELVARVKANLRRHQN 122 Query: 122 SNNRAETGPIRV---------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 E D + E L RE +L YL + G+ + + Sbjct: 123 VQIPLEDDQKGNEIVIGSLVIHPDAYVVSKREETIELTHREFELLHYLGKHIGQVMTREH 182 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + ++G +D + V+ + +LR+K+ + + ++R +GY + Sbjct: 183 LLQTVWG-YDYYGDVRTVDVTVRRLREKIEDNPSHPMWIVTRRGVGYYL 230 >gi|153854770|ref|ZP_01996004.1| hypothetical protein DORLON_02002 [Dorea longicatena DSM 13814] gi|149752677|gb|EDM62608.1| hypothetical protein DORLON_02002 [Dorea longicatena DSM 13814] Length = 233 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 46/229 (20%), Positives = 87/229 (37%), Gaps = 10/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +D + F + + +S + D++ ++ L Sbjct: 7 ILVVDDEKEIADVVELYLQNDQYKVFKFYNGQDALDCINSTKIDLAILDIML--PDIDGF 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + IR P+I ++ + G DD + KP + E++ARV A RR Sbjct: 65 QILKQIRQKYTFPVIMLTAKTEYMDKITGLTLGADDYIPKPFNPLELVARVKAQLRRCTQ 124 Query: 122 SNNRAETGPIRVFS-------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N + + + L E IL L NRGK ++ ++F Sbjct: 125 YNEGTKEEGDVLDFGGLLLNRTSHECVYNEVPLTLTPIEFDILWLLCENRGKVISSEELF 184 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSIDW 222 ++ N V HI LR+K+ G D + + +GY ++ Sbjct: 185 EKVWHEKYYKNSNNTVMVHIRHLREKMSAPTGKSDFIKTVWGVGYKVEE 233 >gi|84494860|ref|ZP_00993979.1| putative two-component system response regulator [Janibacter sp. HTCC2649] gi|84384353|gb|EAQ00233.1| putative two-component system response regulator [Janibacter sp. HTCC2649] Length = 225 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 47/226 (20%), Positives = 91/226 (40%), Gaps = 14/226 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D ++ +G ++ + + D+ ++ L G LE Sbjct: 5 LVVEDEPMINQAVTDRLRAEGYTVHQAHDGPAAVAAFTEHAPDLVVLDVML--PGFDGLE 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121 + R I+A VP++ ++ L G DD V KP RE++AR A+ RR++ Sbjct: 63 VCRRIQAIRPVPVLMLTARDEETDILVGLGVGADDYVTKPFRMREVVARTHALLRRVERA 122 Query: 122 ------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 G I + R V G+ L E +L L + G ++ Q+ Sbjct: 123 AELASTPAPTTHVGAIEIDGPARRVTVDGQDVHLTPLEFDLLAALASTPGAVRSREQLMG 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G D + ++SH+ LR K+ V + +GY+++ Sbjct: 183 EVWGWADASG-TRTLDSHVKSLRAKIGAA----RVRTVHGVGYALE 223 >gi|325000981|ref|ZP_08122093.1| two component transcriptional regulator, winged helix family protein [Pseudonocardia sp. P1] Length = 229 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 52/228 (22%), Positives = 98/228 (42%), Gaps = 11/228 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D D + +G + + D+ ++ L G + Sbjct: 5 LIVEDEESFADPLAFMLRKEGFTTAVAANGNDALSEFDRNGADIVLLDLML--PGMSGTD 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-------AI 115 + + +R+ S VP+I ++ S + + G DD V KP RE++ARV Sbjct: 63 VCKALRSRSAVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARVRAVLRRGGEA 122 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + N E GP+R+ + V G+ PLP +E +LEYL+ N G+ + + Q+ Sbjct: 123 TGETESGNGILEAGPVRMDVERHVVSVNGDDVPLPLKEFDLLEYLLRNVGRVLTRAQLID 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDW 222 ++G D + ++ H+ +LR K+ + + + R LGY D Sbjct: 183 RVWGA-DYVGDTKTLDVHVKRLRSKVEDDPSTPKHLVTVRGLGYKFDV 229 >gi|312134258|ref|YP_004001596.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor owensensis OL] gi|311774309|gb|ADQ03796.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor owensensis OL] Length = 217 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 51/221 (23%), Positives = 99/221 (44%), Gaps = 8/221 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D ++ +G ++ + + V ++ L K Sbjct: 3 ILLIEDEEKLRKIIKLYLEKEGFEVKEASDGNEAIEKFQPSMYSVVILDVMLPQK--DGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R IR P+I ++ + F+ G DD V KP+ +EI+ARV AI +R K Sbjct: 61 SVLREIRKKDDTPVIMLTARGEDDDKIFGFELGADDYVVKPVSPKEIVARVKAILKRSKK 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 S++ + + R+ V+G+ L ++E +L YL + +++ QI ++++G + Sbjct: 121 SSSDEI---LFIDKAAREVYVKGQKLNLTQKEYELLLYLYERQNIALSREQILNSVWG-Y 176 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + + V++HI LR+KL D + + R GY + Sbjct: 177 EYYGDLRTVDTHIKNLREKLGEL--RDYIKTVRGYGYKFEV 215 >gi|332981849|ref|YP_004463290.1| winged helix family two component transcriptional regulator [Mahella australiensis 50-1 BON] gi|332699527|gb|AEE96468.1| two component transcriptional regulator, winged helix family [Mahella australiensis 50-1 BON] Length = 229 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 34/225 (15%), Positives = 87/225 (38%), Gaps = 10/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D +++ F G S+ + E D+ ++ L G Sbjct: 4 ILIIEDEKPIREFIKIGFERSGYSIVEATTGEDGIRKAREQTPDMVILDIIL--PGIDGF 61 Query: 62 ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-----ARVAAI 115 + + + + ++ +I ++ + + G DD V KP + E++ Sbjct: 62 NVCKTLRQEFPRMGIIMLTARNLEMDRIMGLEYGADDYVIKPFNPLELILRAEAILKRLH 121 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 +GP ++ + + G L +E +LE L+++ ++K ++ Sbjct: 122 GNSQTSDRETLTSGPFKIATYAQKVYKHGMEIELTPKEYLLLETLISHPNVVMSKDKLLD 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219 ++G ++ + V+ + +LRKK+ + +++ +GY Sbjct: 182 IVWG-YEFDGDSKSVDVQVHRLRKKIEDDPAKPRYIETVWGIGYR 225 >gi|254394028|ref|ZP_05009112.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294814967|ref|ZP_06773610.1| Two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|326443338|ref|ZP_08218072.1| putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|197707599|gb|EDY53411.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294327566|gb|EFG09209.1| Two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 245 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 47/227 (20%), Positives = 96/227 (42%), Gaps = 15/227 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + + D A +G ++ + + D+ ++ L G LE Sbjct: 22 LVVEDDSTIVDAIAARLRAEGFLVQTAADGPAAVDAAEAWQPDLMVLDVML--PGFDGLE 79 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R ++A VP++ ++ L G DD + KP RE+ ARV + RR++ + Sbjct: 80 VCRRVQAQRPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRVERA 139 Query: 123 NNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 A T + R V+G+ L E +L L +++ Q+ Sbjct: 140 ALAAVTPRSGILRLGELEIDHAQRRVRVRGDDVHLTPTEFDLLVCLANTPRAVLSREQLL 199 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + ++ D + V+SHI LR+K+ G + + + +GY+++ Sbjct: 200 AEVWDWADASG-TRTVDSHIKALRRKI----GAERIRTVHGVGYALE 241 >gi|228995632|ref|ZP_04155297.1| Two-component response regulator [Bacillus mycoides Rock3-17] gi|229003260|ref|ZP_04161093.1| Two-component response regulator [Bacillus mycoides Rock1-4] gi|228757994|gb|EEM07206.1| Two-component response regulator [Bacillus mycoides Rock1-4] gi|228764128|gb|EEM13010.1| Two-component response regulator [Bacillus mycoides Rock3-17] Length = 233 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 43/230 (18%), Positives = 87/230 (37%), Gaps = 11/230 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++D ++G + ++ + ++ + Sbjct: 6 ILVVDDEKEIRDLITIYLKNEGYKVLQAEDGAEGLYILEKNEVHLVVLDIM--MPKIDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-------AA 114 + IR ++P+I +S + +G DD V KP + E++AR+ Sbjct: 64 HMCMKIREAKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRRYMK 123 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + + N E G +++ V+ E L RE ILE L N + QI+ Sbjct: 124 MNGFIVQNENEIEIGNMKINVSTHKVVVENEEVKLTPREFSILELLARNPEMVFSAEQIY 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDWN 223 ++ +N V HI K+R+K + + +GY I+ + Sbjct: 184 EKVWNERSFQ-SDNTVMVHIRKIREKTEENPRKPIYIKTVWGVGYKIEKD 232 >gi|256371502|ref|YP_003109326.1| two component transcriptional regulator, winged helix family [Acidimicrobium ferrooxidans DSM 10331] gi|256008086|gb|ACU53653.1| two component transcriptional regulator, winged helix family [Acidimicrobium ferrooxidans DSM 10331] Length = 236 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 45/224 (20%), Positives = 90/224 (40%), Gaps = 5/224 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +G +++ + + A D ++ L G Sbjct: 3 LLIVDDEENLLASLKRGLSAEGFAVDTASDGTTGLDMARHAPYDCIVLDIML--PGVNGF 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + +++R P++ ++ + D+G DDV+ KP ++AR+ A+ RR Sbjct: 61 KFTQLLREERNWTPILMLTAKDGEYDEAEALDTGADDVLKKPFSFTVLVARIRALLRRNV 120 Query: 121 VSNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S+ L RE LE L+ N+G + K I + ++ Sbjct: 121 ESHPPILQAGDLTLDPASHRVTRGNVTIDLTTREFSFLELLLRNKGHVLRKQDIIAHVWD 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 +D + N+VE +I LRKK+ G + + R +GY ++ + Sbjct: 181 -YDFEGDSNIVEVYIGYLRKKIDVPFGTKAITTIRGVGYRLEED 223 >gi|253699900|ref|YP_003021089.1| transcriptional regulator [Geobacter sp. M21] gi|251774750|gb|ACT17331.1| two component transcriptional regulator, winged helix family [Geobacter sp. M21] Length = 225 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 43/225 (19%), Positives = 90/225 (40%), Gaps = 10/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++I+D + + +G + + D+ ++ L G E Sbjct: 5 LVIEDEKDLAELVAFHLEQEGYCCLVAHDGAAGLAEARRCKPDLILLDLML--PGMMGTE 62 Query: 63 LPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 + R ++ + +P+I ++ + F+ G DD V KP RE++ RV A+ RR Sbjct: 63 VCRTLKGAELTAGIPVIMLTARGEEIDRVVGFEMGADDYVVKPFSTRELMLRVRAVLRRK 122 Query: 120 KVSNNRAETGPIR--VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + A + + V GE L E ++L L G+ ++ + + Sbjct: 123 LPAAEGATISLGTLLIDVERHLVRVAGEEVQLTSTEFKLLMNLAERIGRVQSRELLLQNV 182 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +G + + V++H+++LR KL + + + R GY ++ Sbjct: 183 WG-YSYLGDTRTVDTHMTRLRTKLGAAG--ELIKTVRGFGYKLEE 224 >gi|169830175|ref|YP_001700333.1| transcriptional regulatory protein [Lysinibacillus sphaericus C3-41] gi|168994663|gb|ACA42203.1| Transcriptional regulatory protein [Lysinibacillus sphaericus C3-41] Length = 237 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 49/230 (21%), Positives = 94/230 (40%), Gaps = 14/230 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + + + D+ ++ L + Sbjct: 5 ILVVDDEKPIADILQFNLIKEGYKVICAYDGDEALKRVEEEQPDLMLLDIML--PKRDGM 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R P+I ++ S + + G DD V KP RE++ARV A RRL+V Sbjct: 63 EVCREVRKKYDFPIIMLTAKGSEIDKVLGLEMGADDYVTKPFSTRELIARVKANMRRLQV 122 Query: 122 SNNRAETGPIR----------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + AE + D + E L RE +L YL + G+ + + Sbjct: 123 AAPVAEEAEEESNEIVVGSLVIQPDAYLVMKRDEAIELTHREFELLHYLGKHIGQVMTRE 182 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + ++G +D + V+ I +LR+K+ + + ++R +GY + Sbjct: 183 HLLQTVWG-YDYLGDVRTVDVTIRRLREKIEDNPSHPAWIVTRRGVGYYL 231 >gi|168466206|ref|ZP_02700076.1| response regulator [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195631460|gb|EDX50020.1| response regulator [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 240 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 41/224 (18%), Positives = 84/224 (37%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + + N + D+ ++ L G L Sbjct: 13 ILIVEDEPKLGQLLVDYLRAASYAPTLINHGDKVLPYVRQTPPDLILLDLML--PGTDGL 70 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118 L R IR S +P++ ++ L + G DD + KP RE + + + Sbjct: 71 TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + P+ + G+ L E R+L+ L GK ++ Q+ + +Y Sbjct: 131 QRELQQQDAESPLMIDESRFQASWCGKALDLTPAEFRLLKTLSLEPGKVFSREQLLNHLY 190 Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + V + ++SHI LR+KL + + + +GY + Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 >gi|160880125|ref|YP_001559093.1| two component transcriptional regulator [Clostridium phytofermentans ISDg] gi|160428791|gb|ABX42354.1| two component transcriptional regulator, winged helix family [Clostridium phytofermentans ISDg] Length = 240 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 47/227 (20%), Positives = 94/227 (41%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 ++IDD + + +G + E L D+ ++ L E+ Sbjct: 10 ILIIDDEEDILKLLSMVLKKEGFENIYTAEDGEGGFTLFKRISPDIILLDIML--PDEEG 67 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------A 114 E+ + IR S VP++ IS + F G DD + KP +E+ R+ + Sbjct: 68 YEVCKKIRKSSNVPILFISAKTEEIDRVLGFALGGDDYITKPFSPKEVAYRIKAILRRSS 127 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + + GP ++ + + GE+ L +E ++ YL + + ++K ++ Sbjct: 128 YHDEEENKSTILNLGPFQIDEEKIEVRKNGELIELKPKEYKMFLYLAKHPNQIMSKEKLC 187 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 S ++G D +N + HI KLR+K+ + + + + LGY Sbjct: 188 SEVWGE-DYIGFDNTIMVHIRKLREKIEKDPSNPKHILNIKGLGYKF 233 >gi|150016678|ref|YP_001308932.1| two component transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149903143|gb|ABR33976.1| two component transcriptional regulator, winged helix family [Clostridium beijerinckii NCIMB 8052] Length = 232 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 36/231 (15%), Positives = 85/231 (36%), Gaps = 14/231 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + + G E L + D+ ++ L G+ Sbjct: 4 ILIIEDDESIAELERDYLEITGFKTEIAQDGYKGLDLALNEEFDLILLDVML--PGKDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH----------HREILAR 111 ++ + IRA ++P++ ++ + G DD + KP H R Sbjct: 62 KVCQEIRAVKEIPILMVTAKKEDIYKIQGLGIGADDYIVKPFSPSELVARVNAHISRYER 121 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + I + + G I++ R + +E +L +L +N +K Sbjct: 122 LTTIEKNSDNEKSSIIIGRIKILLKARRVYIGENEVKFANKEFELLMFLASNPNIVFSKD 181 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 + I+G + + + + HI+++R+K+ + + +++ GY + Sbjct: 182 TLLDRIWGE-ESLGDSSTITVHINRIREKIELDSSNPEYIETVWGAGYRFN 231 >gi|120402752|ref|YP_952581.1| two component transcriptional regulator [Mycobacterium vanbaalenii PYR-1] gi|119955570|gb|ABM12575.1| two component transcriptional regulator, winged helix family [Mycobacterium vanbaalenii PYR-1] Length = 228 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 45/220 (20%), Positives = 86/220 (39%), Gaps = 5/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + +G R D+ ++ L G + Sbjct: 8 ILVVDDDPSLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDLML--PGMNGI 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R++RA S VP++ ++ + +SG DD V KP +E++ARV A RR + Sbjct: 66 DVCRVLRADSGVPIVMLTAKTDTVDVVLGLESGADDYVMKPFKPKELVARVRARLRRNED 125 Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 I + QGE L E +L L + + + ++G Sbjct: 126 EPAEMLSIADIDIDVPAHKVTRQGEQISLTPLEFDLLVALARKPRQVFTRDVLLEQVWG- 184 Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219 + + +V H+ +LR K+ + V + R +GY Sbjct: 185 YRHPADTRLVNVHVQRLRAKVEKDPENPQVVLTVRGVGYK 224 >gi|17351928|gb|AAL38200.1|AF319444_1 putative response regulator RR26 [Listeria monocytogenes] Length = 237 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 44/229 (19%), Positives = 92/229 (40%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + + L + D+ ++ L G + Sbjct: 6 ILVLDDEKPIADIVKFNLNKEGFDVYCAYDGDEALELVEEVQPDLILLDIML--PGRDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112 E+ R +R +P+I ++ S + + G DD V KP +RE Sbjct: 64 EVCREVRKKYDMPIIMVTAKDSEIDKVIGLELGADDYVTKPFSNRELIARVKANLRRHSQ 123 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + N+ E G + + D +GE L RE +L YL + G+ + + Sbjct: 124 VSSSTAEEEENSELEIGSLIIHPDAYVASKRGETIELTHREFELLHYLAKHMGQVMTREH 183 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + ++G +D + V+ + +LR+K+ + + ++R +GY + Sbjct: 184 LLQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPAWLVTRRGVGYYL 231 >gi|166031390|ref|ZP_02234219.1| hypothetical protein DORFOR_01079 [Dorea formicigenerans ATCC 27755] gi|166028795|gb|EDR47552.1| hypothetical protein DORFOR_01079 [Dorea formicigenerans ATCC 27755] Length = 229 Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 44/227 (19%), Positives = 83/227 (36%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + D G +E N E + ++ L G Sbjct: 4 ILIVEDEETIADLEKDYLELSGFEVEVANDGETGLEKALKDEYSLFILDLML--PGVDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IR P+I +S + G DD + KP E++ARV A R Sbjct: 62 EICKKIREEKNTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARYDR 121 Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N E +R+ + R V +E +L +L ++ K ++F Sbjct: 122 LTGSAVEKNKIIEIRGLRIDTTARRVWVNDVEKTFTTKEFDLLTFLASHPNHVYTKEELF 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 I+ + + + V HI K+R+K+ + +++ +GY Sbjct: 182 REIWDM-ESIGDIATVTVHIKKIREKVEVDTSNPQYIETIWGVGYRF 227 >gi|219847341|ref|YP_002461774.1| winged helix family two component transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219541600|gb|ACL23338.1| two component transcriptional regulator, winged helix family [Chloroflexus aggregans DSM 9485] Length = 227 Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 47/221 (21%), Positives = 85/221 (38%), Gaps = 4/221 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVL 61 +++DD + + G + L R D+ ++ L G + Sbjct: 5 LVVDDDPGIVRLVRSYLEQAGFRVASAFDGATARRLIRQERPDLVILDLMLPDEDGFDIA 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 R A + +P+I ++ + + G DD + KP + RE++ARV A+ RR+ Sbjct: 65 RSLRSDPATATLPIIMLTARIDDTDRIVGLELGADDYIVKPFNPREVVARVKAVLRRVSG 124 Query: 122 SNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 R G + + DG + G L E +L M G + ++ G Sbjct: 125 GTVRNRLEQGSLVLDLDGHQAWLGGNELELTPTEFALLSLFMRYPGHAFTRAELLEQGLG 184 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + E ++SHI LRKKL +++ +GY + Sbjct: 185 -YAATGLERTIDSHIKNLRKKLEYDPAAPVIETVYGIGYRL 224 >gi|302874388|ref|YP_003843021.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] gi|307691010|ref|ZP_07633456.1| two component transcriptional regulator, winged helix family protein [Clostridium cellulovorans 743B] gi|302577245|gb|ADL51257.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] Length = 234 Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 50/231 (21%), Positives = 88/231 (38%), Gaps = 13/231 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ +D + D ++ + + E + + ++ ++ Sbjct: 5 ILIAEDDKDIIDLLKLYLENEKFQVLSAINGEEALEIVENNEIHLAILDIM--MPKLNGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL + IR S +P++ +S + D G DD + KP + EI+ARV + RR Sbjct: 63 ELTKKIREISNMPILILSAKNLDSDKILGLDLGADDYLTKPFNPLEIIARVKSSIRRCYN 122 Query: 122 SNNRAETGPIRV---------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 ++ G + E RIL LM + G+ K Q Sbjct: 123 LKADEVASEKENILTVGELSLNTESFMLTKGGNEISITPTEYRILALLMKSPGRVYTKMQ 182 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 I+ I G + +EN + HISKLR K+ + + + R LGY I+ Sbjct: 183 IYELIKGEY-FESDENTIMVHISKLRDKIEDDSKNPLYIKTIRGLGYKIEK 232 >gi|237707608|ref|ZP_04538089.1| transcriptional regulator PhoB [Escherichia sp. 3_2_53FAA] gi|226898818|gb|EEH85077.1| transcriptional regulator PhoB [Escherichia sp. 3_2_53FAA] gi|315289887|gb|EFU49277.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli MS 110-3] gi|323958591|gb|EGB54294.1| phosphate regulon transcriptional regulatory protein PhoB [Escherichia coli H263] Length = 229 Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 39/224 (17%), Positives = 93/224 (41%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A +++ + +G + + D+ ++ L G + Sbjct: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWML--PGGSGI 62 Query: 62 ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 + + ++ S +P++ ++ + + ++G DD + KP +E++AR+ A+ RR Sbjct: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + E + + E + E ++L + M + + ++ Q+ + Sbjct: 123 ISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNH 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + VE+ V+ HI +LRK L V + R GY Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALEPGGHDCMVQTVRGTGYRF 225 >gi|226322434|ref|ZP_03797952.1| hypothetical protein COPCOM_00205 [Coprococcus comes ATCC 27758] gi|225209156|gb|EEG91510.1| hypothetical protein COPCOM_00205 [Coprococcus comes ATCC 27758] Length = 226 Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 49/223 (21%), Positives = 95/223 (42%), Gaps = 6/223 (2%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEK 59 M ++D A +++ + G GF + ++ ++ L G G + Sbjct: 1 MIFCVEDEANIRELVVYTLETTGFEARGFEEGTSFFEALAEELPELILLDIMLPGEDGME 60 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +L+ + +P+I ++ + + D+G DD V KP E+++R+ A+ RR Sbjct: 61 ILKKLKTSGRTKDIPVIMVTAKGAEYDKVMGLDAGADDYVTKPFGMMELVSRIRAVLRRT 120 Query: 120 KVSNNRAETG--PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 IR+ + V GE L +E +L LM N+ + + ++ I Sbjct: 121 SKKEEDDTYVLGEIRMDRKKHEVTVAGEPVALTLKEYELLRKLMENQNIVLTRDKLLEEI 180 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G +D E V+ H+ LR+KL + +++ R +GY I Sbjct: 181 WG-YDFDGETRTVDVHVRTLRQKLGQAG--EYIETVRGVGYRI 220 >gi|167750198|ref|ZP_02422325.1| hypothetical protein EUBSIR_01172 [Eubacterium siraeum DSM 15702] gi|167656760|gb|EDS00890.1| hypothetical protein EUBSIR_01172 [Eubacterium siraeum DSM 15702] Length = 235 Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 51/234 (21%), Positives = 92/234 (39%), Gaps = 16/234 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +DG ++ F + S D++ ++ L Sbjct: 5 ILIVDDEKEIADLIEVYLENDGYTVHKFYNGMDALKCIESQNLDLAILDVML--PDIDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + IR P+I ++ + G DD + KP + E++ARV RR Sbjct: 63 RICQKIREQYYYPIIMLTAKVEDTDKIMGLTIGADDYITKPFNPLEVVARVKTQLRRYVR 122 Query: 122 SNN------------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 NN + + + + + G+ L E IL YL NRGK ++ Sbjct: 123 YNNAANTEEKDAPIAEHDVRGLIINKNTHKCTLYGKEVTLTPIEFSILWYLCENRGKVIS 182 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDW 222 ++F I+G N V +HI +LR+KL + + +GY+I+ Sbjct: 183 SEELFENIWGEKFLD-NNNTVMAHIGRLREKLNEPAKKPKFIKTVWGVGYTIEK 235 >gi|170019594|ref|YP_001724548.1| DNA-binding transcriptional regulator BaeR [Escherichia coli ATCC 8739] gi|169754522|gb|ACA77221.1| two component transcriptional regulator, winged helix family [Escherichia coli ATCC 8739] Length = 240 Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 41/224 (18%), Positives = 86/224 (38%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + I + + + D+ ++ L G L Sbjct: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLML--PGTDGL 70 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118 L R IR S +P++ ++ L + G DD + KP RE + + + Sbjct: 71 TLCREIRRFSDIPIVMVTAKIEETDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + P+ + +G++ L E R+L+ L GK ++ Q+ + +Y Sbjct: 131 QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190 Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + V + ++SHI LR+KL + + + +GY + Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 >gi|319648966|ref|ZP_08003175.1| YcbL protein [Bacillus sp. BT1B_CT2] gi|317388960|gb|EFV69778.1| YcbL protein [Bacillus sp. BT1B_CT2] Length = 230 Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 41/227 (18%), Positives = 83/227 (36%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D + + +G + E L D ++ L + Sbjct: 4 ILLIEDDHSISEMVDHYLTKEGFEVVLAFDGEEGVRLFQQGNYDAILLDIML--PKLNGM 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI-------LARVAA 114 + ++IR S+VP++ IS G DD + KP E+ + R Sbjct: 62 DFLKMIREQSKVPVLMISAKDGDVDKALGLGFGADDYIAKPFSMIELTARIKAAIRRATQ 121 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + V + + GE L E ++L + N K K QI+ Sbjct: 122 YSVSEPANQKILRVHELTVDIENVSVQKNGEPLQLTSTEWKMLTLFVTNPKKVFTKEQIY 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 +++ D ++N++ H+ +LR+K+ + + + +GY + Sbjct: 182 RSVW-NDDYFGDQNIINVHMRRLREKIEDDPSSPQYIKTLWGIGYKL 227 >gi|313112755|ref|ZP_07798403.1| response regulator receiver domain protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310624954|gb|EFQ08261.1| response regulator receiver domain protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 331 Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 47/225 (20%), Positives = 88/225 (39%), Gaps = 10/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ G E S D+ ++ + Sbjct: 107 ILIVDDEPRIRELIREHLQYSGYICEEAADGTAALTQLSGGAFDLVILDLM--MPFMDGM 164 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 R +RA P+I ++ L +SG DD V KP RE++ARV A+ R Sbjct: 165 TCLREMRARHINTPVIILTARGEEYDKLAGLESGADDYVVKPFSPRELVARVKAVLNRTM 224 Query: 121 VSN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + G + + + V GE L +E +L +L +N+G +++ +I Sbjct: 225 PKPAAASDTMTFGELTIDTASHTVRVSGEEVALTPKEFDLLVFLASNKGIALSREKILQK 284 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ +D E+ V++H+ LR L + + +GY D Sbjct: 285 VW-NYDYFGEDRTVDTHVKMLRGHLGK--CRSYIATVWGIGYKFD 326 >gi|261207330|ref|ZP_05922017.1| response regulator VanRG [Enterococcus faecium TC 6] gi|289566529|ref|ZP_06446952.1| regulatory protein vanR [Enterococcus faecium D344SRF] gi|294616551|ref|ZP_06696329.1| regulatory protein VanR [Enterococcus faecium E1636] gi|260078390|gb|EEW66094.1| response regulator VanRG [Enterococcus faecium TC 6] gi|289161683|gb|EFD09560.1| regulatory protein vanR [Enterococcus faecium D344SRF] gi|291291671|gb|ADD91669.1| DdcR [Enterococcus faecium] gi|291590598|gb|EFF22329.1| regulatory protein VanR [Enterococcus faecium E1636] Length = 233 Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 48/232 (20%), Positives = 92/232 (39%), Gaps = 15/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L+DD + D +DG ++ F + D++ ++ L Sbjct: 5 ILLVDDEQEIADLIEVYLKNDGYEVQKFYLGQEALDYIERESFDLAVLDVML--PDIDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + IR + P+I ++ + G DD + KP + E++AR+ RR + Sbjct: 63 KIVQKIRENHFFPVIMLTAKIEDIDKITGLTLGADDYITKPFNPLEVVARIKTQLRRFQK 122 Query: 122 SNNRAET-----------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 N + + + + + GE L E IL YL +G+ V Sbjct: 123 YNIQVDYSTEESIKEIDIHGLIINQTLHTCTLYGETISLTPLEFAILWYLAERKGEVVPA 182 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 Q+F A++G N V +HI +LR+KL+ + + +GY ++ Sbjct: 183 EQLFEAVWGEKFLD-NNNTVMAHIGRLREKLKEPTRKPKFIKTVWGVGYKVE 233 >gi|58039171|ref|YP_191135.1| phosphate regulon response regulator PhoB [Gluconobacter oxydans 621H] gi|58001585|gb|AAW60479.1| Phosphate regulon response regulator PhoB [Gluconobacter oxydans 621H] Length = 240 Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 56/222 (25%), Positives = 99/222 (44%), Gaps = 6/222 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L++D + G +E E + +AR D ++ L G L+ Sbjct: 14 LLVEDDPALLLMTCYNLEQRGYRVETAEDGEAALLVLETARPDAVVLDWML--PGLSGLD 71 Query: 63 LPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 + R IRA+ VP++ ++ + Q + D+G DD + KP + AR+ A+ RR Sbjct: 72 VCRRIRANPALRDVPVLLLTARSAEQDAIRGLDTGADDYLMKPCSIDTLDARLRALLRRH 131 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + S +R I + + E G + L E R+L+ L+ N K ++ + I+G Sbjct: 132 QSSYDRLSFADITLDPETHRVERAGRMLSLGPTEYRLLDLLIRNPRKVFSRENLLRRIWG 191 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + VE ++ HI +LRK + D V + R GY++D Sbjct: 192 Q-NIHVEIRTIDVHIRRLRKAINGPGEVDLVRTVRAAGYALD 232 >gi|167758624|ref|ZP_02430751.1| hypothetical protein CLOSCI_00964 [Clostridium scindens ATCC 35704] gi|167663820|gb|EDS07950.1| hypothetical protein CLOSCI_00964 [Clostridium scindens ATCC 35704] Length = 229 Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 46/227 (20%), Positives = 86/227 (37%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + D G +E N E D+ ++ L G Sbjct: 4 ILIVEDEEAIADLEKDYLELSGFKVEVANDGETGLKKALGEEFDMFILDLML--PGIDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR P+I +S + G DD + KP E++ARV A R Sbjct: 62 EICRQIRDKKNTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARYDR 121 Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 +N E +++ + R V E +E +L +L ++ K ++F Sbjct: 122 LTGSAVEANKVIEIRGLKIDTTARRVWVNEEERTFTTKEFDLLTFLASHPNHVYTKEELF 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 I+ + + + V HI K+R+K+ + +++ +GY Sbjct: 182 REIWDM-ESIGDIATVTVHIKKIREKVEMDTSNPQYIETIWGVGYRF 227 >gi|161486796|ref|NP_805595.2| transcriptional regulator YedW [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|161501946|ref|NP_455593.2| transcriptional regulator YedW [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|213021734|ref|ZP_03336181.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] gi|213162819|ref|ZP_03348529.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213428532|ref|ZP_03361282.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213610054|ref|ZP_03369880.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213857941|ref|ZP_03384912.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|289811681|ref|ZP_06542310.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Typhi str. AG3] gi|289824356|ref|ZP_06543949.1| transcriptional regulatory protein YedW [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] Length = 226 Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 46/219 (21%), Positives = 93/219 (42%), Gaps = 3/219 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D + + G ++ L + ++ L G Sbjct: 3 ILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIML--PGLDGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R +R Q P+I ++ S++ + ++G +D + KP E+LARV A R+ Sbjct: 61 QVLRALRTAYQPPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHVP 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 R + + + + G+ L R+E +L L + G+ V +T I S ++G+ Sbjct: 121 VFTRLTINGLDMDATKQSVLRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWGI- 179 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + E N V+ I +LR K+ + + + + +GY + Sbjct: 180 NFDSETNTVDVAIRRLRAKVDDPFEKKLIMTVQGMGYRL 218 >gi|124112128|ref|YP_001019064.1| regulatory component of sensory transduction system [Chlorokybus atmophyticus] gi|124012235|gb|ABM87971.1| regulatory component of sensory transduction system [Chlorokybus atmophyticus] Length = 241 Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 44/230 (19%), Positives = 94/230 (40%), Gaps = 13/230 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A+V+ G ++ N E + + + ++ Sbjct: 10 IMVVDDEAIVRQIIQTRLSMIGYNVITANDGEEAIKMFFKEQPQLVVLDVM--MPKLDGY 67 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + +R S VP+I ++ + + + G DD + KP +E+ AR+ +++RR Sbjct: 68 SVCQQLRRESDVPIIMLTALEDVADRITGLELGADDYIMKPFSPKELEARIRSVFRRSNR 127 Query: 122 SNNRAETGPI---------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 ++ + + + + L E +LE L+ G+ V++ + Sbjct: 128 NSYVVKQNKDSSIINIGSLIIDKKRKQVFKDNKRLRLTGMEFSLLELLINRSGESVSRYE 187 Query: 173 IFSAIYGLF-DEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220 I ++ D ++ VV+ HIS+LR KL + D + + R +GY Sbjct: 188 ILKEVWEYGNDSYIDTRVVDVHISRLRSKLEEDPANPDLILTVRGIGYLF 237 >gi|73662382|ref|YP_301163.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72494897|dbj|BAE18218.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 236 Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 46/230 (20%), Positives = 97/230 (42%), Gaps = 14/230 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + G +E E ++ ++ ++ L + +E Sbjct: 6 LVVDDEQSIVTLLKYNLEQAGYIVEVAYDGEEALEKVNATNPELIVLDVML--PKKDGIE 63 Query: 63 LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + IR+ VP++ ++ + + G DD + KP RE++ARV AI RR + Sbjct: 64 VCKSIRSDKNLVPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRRSAI 123 Query: 122 SNNRAETGPIRVF---------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 N + + + E+ L +E +L YL+ +G+ + + Sbjct: 124 VNEAVPVENDEDDILIGSIRIRPEYFEVYREDELLELTPKEFELLLYLIERQGRVITREH 183 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221 + ++++ ++ A + +V+ HIS LR KL + + R LGY ++ Sbjct: 184 MLNSVW-NYEFAGDSRIVDVHISHLRDKLEENPKQPKLIKTVRGLGYKLE 232 >gi|16761060|ref|NP_456677.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29141243|ref|NP_804585.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213160755|ref|ZP_03346465.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213416998|ref|ZP_03350142.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213648513|ref|ZP_03378566.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|289805497|ref|ZP_06536126.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Typhi str. AG3] gi|25300978|pir||AH0771 probable two-component system response regulator STY2344 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16503358|emb|CAD02494.1| putative two-component system response regulator [Salmonella enterica subsp. enterica serovar Typhi] gi|29136869|gb|AAO68434.1| putative two-component system response regulator [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 240 Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 42/224 (18%), Positives = 84/224 (37%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + I + N + D+ ++ L G L Sbjct: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLINHGDKVLPYVRQTPPDLILLDLML--PGIDGL 70 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118 L R IR S +P++ ++ L + G DD + KP RE + + + Sbjct: 71 TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + P+ + G+ L E R+L+ L GK ++ Q+ + +Y Sbjct: 131 QRELQQQDAESPLMIDESRFQASWCGKALDLTPAEFRLLKTLSLEPGKVFSREQLLNHLY 190 Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + V + ++SHI LR+KL + + + +GY + Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 >gi|329923173|ref|ZP_08278661.1| transcriptional regulatory protein afsQ1 [Paenibacillus sp. HGF5] gi|328941559|gb|EGG37847.1| transcriptional regulatory protein afsQ1 [Paenibacillus sp. HGF5] Length = 228 Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 43/223 (19%), Positives = 86/223 (38%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + +G + + + + S R D+ ++ L K + Sbjct: 5 LLIVEDAPGMLEEMQTYLQREGFKVLTACTGKEALMIARSERPDLVVLDWMLPEK--SGI 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R IR S +I ++ + + G DD + KP RE+ +R+ A+ RRL+ Sbjct: 63 DVCREIRQTSHCGIIMVTARSDESDKIVGLEIGADDYLTKPFSLRELASRIRALLRRLRG 122 Query: 122 SNNRAETGPIRVFSDG---RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 +++ G+ L E +IL L G ++ Q+ A Sbjct: 123 PEDKSIFLERDNLIISEAKCQVFKDGQELQLTPTEFKILFTLAGRPGIVFSRLQLLKAAL 182 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 + E ++SHI LR+KL + + + GY Sbjct: 183 -EDEYMGYERTMDSHIRNLRRKLGDDPANPRYIQTVYGFGYRF 224 >gi|323485737|ref|ZP_08091073.1| hypothetical protein HMPREF9474_02824 [Clostridium symbiosum WAL-14163] gi|323693077|ref|ZP_08107296.1| DNA-binding response regulator ResD [Clostridium symbiosum WAL-14673] gi|323400917|gb|EGA93279.1| hypothetical protein HMPREF9474_02824 [Clostridium symbiosum WAL-14163] gi|323502831|gb|EGB18674.1| DNA-binding response regulator ResD [Clostridium symbiosum WAL-14673] Length = 225 Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 52/222 (23%), Positives = 102/222 (45%), Gaps = 5/222 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD A ++ G + E + + D++ I ++ E Sbjct: 7 LVVDDEARMRKLVRDFLTVKGFLVVEAGDGEEAIDIFFEQK-DIALILLDVMMPKMDGWE 65 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLKV 121 + R IR +SQVP+I ++ Q L F GVD+ ++KP + ++ARV AI R + Sbjct: 66 VCRTIRKYSQVPIIMLTARGEEQDELQGFSLGVDEYISKPFSPKILVARVEAILRRSSTM 125 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 S + G I + V G+ L +E ++ Y N+G +++ +I + ++ + Sbjct: 126 SQEVIDVGGIHIDKSAHQVLVDGKNVDLSYKEFELITYFAENQGIALSREKILNNVW-NY 184 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 D + +++H+ KLR KL +K D + + +GY + + Sbjct: 185 DYFGDARTIDTHVKKLRSKLGDKG--DYIKTIWGMGYKFEVD 224 >gi|227891876|ref|ZP_04009681.1| response regulator [Lactobacillus salivarius ATCC 11741] gi|301299823|ref|ZP_07206059.1| response regulator receiver domain protein [Lactobacillus salivarius ACS-116-V-Col5a] gi|227866339|gb|EEJ73760.1| response regulator [Lactobacillus salivarius ATCC 11741] gi|300852576|gb|EFK80224.1| response regulator receiver domain protein [Lactobacillus salivarius ACS-116-V-Col5a] Length = 229 Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 44/227 (19%), Positives = 93/227 (40%), Gaps = 9/227 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + ++G +E + + + D++ + ++ + Sbjct: 3 ILIVDDDKDIVELLSIYVENEGYEVEKAYNGKEALSKL-NMNPDIALMILDVMMPQMDGM 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R SQ+P++ +S + G DD V KP + E++ARV ++ RR + Sbjct: 62 EVIREVRKESQIPVLILSAKTDDLDKIQGLVQGADDYVTKPFNPLEVMARVKSLLRRAEH 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQG------EVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + E I + + + L E IL L ++ + + +IF Sbjct: 122 NVKNNEPDQIEIGPLIIKKDSHEVKTLEGKEIKLTALEFGILHLLASHPNRVFSADEIFE 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 ++ + V V H+S LR K+ + G + + +GY I+ Sbjct: 182 RVW-QQESVVSAKTVMVHVSHLRDKIEDATNGEQVIQTVWGVGYKIE 227 >gi|46908673|ref|YP_015062.1| DNA-binding response regulator PhoP [Listeria monocytogenes serotype 4b str. F2365] gi|47092787|ref|ZP_00230572.1| DNA-binding response regulator PhoP [Listeria monocytogenes str. 4b H7858] gi|290892664|ref|ZP_06555656.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL J2-071] gi|293596309|ref|ZP_05230378.2| DNA-binding response regulator PhoP [Listeria monocytogenes FSL J1-194] gi|293596921|ref|ZP_05265617.2| DNA-binding response regulator PhoP [Listeria monocytogenes HPB2262] gi|46881945|gb|AAT05239.1| DNA-binding response regulator PhoP [Listeria monocytogenes serotype 4b str. F2365] gi|47018875|gb|EAL09623.1| DNA-binding response regulator PhoP [Listeria monocytogenes str. 4b H7858] gi|290557724|gb|EFD91246.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL J2-071] gi|293583815|gb|EFF95847.1| DNA-binding response regulator PhoP [Listeria monocytogenes HPB2262] gi|293594620|gb|EFG02381.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL J1-194] Length = 240 Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 47/233 (20%), Positives = 95/233 (40%), Gaps = 16/233 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A + G + L S + D+ ++ L + Sbjct: 8 ILVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLML--PEMDGI 65 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ + +R VP++ ++ + + G DD + KP RE++AR+ AI RR + Sbjct: 66 EVTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTE 125 Query: 121 VSNNRAETGPIR-----------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 E + D + +Q ++ L +E +L +L +RGK + Sbjct: 126 GKAEIIEEITEDSEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFS 185 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 + Q+ ++ +D E +V+ H+S LR K+ + + + R GY ++ Sbjct: 186 RDQLLDTVW-NYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKME 237 >gi|302870116|ref|YP_003838753.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|315503607|ref|YP_004082494.1| two component transcriptional regulator, winged helix family [Micromonospora sp. L5] gi|302572975|gb|ADL49177.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|315410226|gb|ADU08343.1| two component transcriptional regulator, winged helix family [Micromonospora sp. L5] Length = 222 Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 50/223 (22%), Positives = 92/223 (41%), Gaps = 9/223 (4%) Query: 5 IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64 ++D D + +G + + D+ ++ L E+ Sbjct: 2 VEDEESFSDALSYMLRKEGFEVSVAATGPAALTEFDRTGADIVLLDLML--PEMSGTEVC 59 Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R +R S VP+I ++ S + + G DD V KP RE++AR+ A+ RR +N Sbjct: 60 RQLRQRSHVPIIMVTARDSEIDKVVGLEIGADDYVTKPYSPRELVARIRAVLRRQSAESN 119 Query: 125 RAETG-----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 P+R+ + V G LP +E +LE L+ N G+ + + Q+ ++G Sbjct: 120 ETGAPTLAAGPVRMDIERHVVTVGGAGVQLPLKEFELLELLLRNAGRVLTRGQLIDRVWG 179 Query: 180 LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 D + ++ H+ +LR K+ + + R LGY + Sbjct: 180 A-DYVGDTKTLDVHVKRLRSKIEPEPSAPRYIVTVRGLGYKFE 221 >gi|289435762|ref|YP_003465634.1| DNA-binding response regulator [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289172006|emb|CBH28552.1| DNA-binding response regulator [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 236 Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 45/233 (19%), Positives = 96/233 (41%), Gaps = 16/233 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A + G + L S + D+ ++ L + Sbjct: 4 ILVVDDEASIVTLLQFNIEKAGFGVVTAEDGRAGYELALSEKPDLIVLDLML--PEMDGI 61 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ + +R + VP++ ++ + + G DD + KP RE++AR+ AI RR + Sbjct: 62 EVTKKLRQNKVDVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTE 121 Query: 121 VSNNRAETGPI-----------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 E ++ + + + ++ L +E +L +L +RGK + Sbjct: 122 GKAEVIEENTEEVEATILIGDLKILPESYEVYLHDDLLDLTPKEFELLLFLANHRGKVFS 181 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 + Q+ ++ +D E +V+ H+S LR K+ + + + R GY ++ Sbjct: 182 RDQLLDTVW-NYDYVGETRIVDVHVSHLRDKIEIDTKQPKYIKTIRGFGYKME 233 >gi|268611080|ref|ZP_06144807.1| two component transcriptional regulator, winged helix family protein [Ruminococcus flavefaciens FD-1] Length = 224 Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 47/225 (20%), Positives = 90/225 (40%), Gaps = 10/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +G + + S DV ++ Sbjct: 4 ILIVDDEPNIVTLISRYAQREGYDIVTASDGREAIDKCRSEDFDVIIMDVM--MPDTDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-----AAIY 116 + I+ +P+I +S + L F+ GVDD V KP E++AR+ + Sbjct: 62 TACKKIKEFKDIPVIMLSARGTEFDKLFGFEVGVDDYVTKPFSPMELMARIKVILSHSRN 121 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 K + + I + + G V GE L +E +L L+ N+G +++ +I + Sbjct: 122 AEQKSDSGKLTVSGIEIDTLGLTVTVNGEKADLTAKEYALLLLLVKNKGIVLSRDRILNE 181 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G +D + V+ I LR KL + D + + R +GY + Sbjct: 182 VWG-YDSFGVDRTVDWQIKLLRSKLGDY--RDSIKTVRGVGYKFE 223 >gi|325288326|ref|YP_004264507.1| two component transcriptional regulator, winged helix family [Syntrophobotulus glycolicus DSM 8271] gi|324963727|gb|ADY54506.1| two component transcriptional regulator, winged helix family [Syntrophobotulus glycolicus DSM 8271] Length = 244 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 43/226 (19%), Positives = 94/226 (41%), Gaps = 7/226 (3%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEK 59 + +++D + ++ +G ++ F + E ++ ++ L G + Sbjct: 5 LIYVVEDESHIQQLVKYNLEKEGYRVKAFGNGESFLQETRLKVPELFLLDIMLPDIDGLE 64 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAI 115 + +L R A +VP+I ++ + + G DD + KP RE++ARV + Sbjct: 65 LCKLLRKNPATHKVPIILLTAKGEEFDKVLGLEIGADDYITKPFSIREMIARVKAVLRRV 124 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 G I + R+ L +E +L+ L+ N+G+ +++ + Sbjct: 125 TEIGAEEEEEIRQGDIVMNCSRREVYKGSRQLDLTLKEFELLKLLLLNKGRVLSRDMLLE 184 Query: 176 AIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220 I+G ++ E V+ HI LR+K+ + +++ R +GY Sbjct: 185 KIWG-YEYQGETRTVDVHIRYLRQKIEEDDNNPLYIETVRGIGYRF 229 >gi|313617011|gb|EFR89609.1| heme response regulator HssR [Listeria innocua FSL S4-378] Length = 225 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 40/223 (17%), Positives = 91/223 (40%), Gaps = 5/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +G + + E + + + ++ I+ Sbjct: 4 ILVVDDDRHILKLVGHYLRAEGFHVLEASDGLEGEKMVETEQVHLAVIDVM--MPNMDGF 61 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119 EL + +R ++ +P+I ++ +L F+ G DD V KP E++ R+ A + R Sbjct: 62 ELCKKLRISYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELIFRIRALLRRSN 121 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + S + G I + ++ + +P +E +L L + G+ + ++ I+ Sbjct: 122 QASEAKITIGNITIDQKSYGIKIGNQERMIPVKEFELLYQLASYPGRIFTREELIERIW- 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 D + V+ HI +LR + + + R +GY ++ Sbjct: 181 QRDYDGSDRTVDVHIKRLRDHFDEEKDGIRIVTVRGIGYKLEE 223 >gi|238765163|ref|ZP_04626095.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia kristensenii ATCC 33638] gi|238696597|gb|EEP89382.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia kristensenii ATCC 33638] Length = 279 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 38/224 (16%), Positives = 91/224 (40%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A +++ + +G + S D+ ++ L G + Sbjct: 55 ILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRLSEPYPDLVLLDWML--PGGSGI 112 Query: 62 ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 + + ++ +P++ ++ + + + G DD + KP +E++AR+ A+ RR Sbjct: 113 QFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRR 172 Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + E + + + + E ++L + M + + ++ Q+ + Sbjct: 173 ISPMAVEEVIEMQGLSLDPSSHRVMSNEQALDMGPTEFKLLHFFMTHPERVYSREQLLNY 232 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + VE+ V+ HI +LRK L V + R GY Sbjct: 233 VWGT-NVYVEDRTVDVHIRRLRKALETDGHDRMVQTVRGTGYRF 275 >gi|229194199|ref|ZP_04321055.1| hypothetical protein bcere0002_57910 [Bacillus cereus ATCC 10876] gi|228589290|gb|EEK47253.1| hypothetical protein bcere0002_57910 [Bacillus cereus ATCC 10876] Length = 229 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 46/229 (20%), Positives = 88/229 (38%), Gaps = 11/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D + + + ++ +S E D+ ++ L Sbjct: 4 ILLIEDEVSIAELQRDYLEINNFQVDVEHSGEIGLQTALQEDYDLIILDIML--PKMNGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IRA +P++ +S + G DD + KP E++ARV A R + Sbjct: 62 EICKQIRAVKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIARYER 121 Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + I + R + E +E +L + + + + + K Q+F Sbjct: 122 LLGNVSKQRDTLYIHGISIDQRARKVFINNEEVAFTTKEFDLLTFFVTHPNQVLNKEQLF 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 I+GL D A + V HI KLR+K+ + +++ GY + Sbjct: 182 ERIWGL-DSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRFNV 229 >gi|172035733|ref|YP_001802234.1| two component transcriptional regulator [Cyanothece sp. ATCC 51142] gi|171697187|gb|ACB50168.1| two component transcriptional regulator [Cyanothece sp. ATCC 51142] Length = 225 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 41/221 (18%), Positives = 97/221 (43%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G ++ N + D+ ++ L G L Sbjct: 6 ILVVEDEVKLAQFIELELKYEGYTVTVVNDGLSGLTTARESNPDLILLDWML--PGISGL 63 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-HREILARVAAIYRRL 119 ++ + +R S+VP+I ++ + + D+G DD + KP + + A + R Sbjct: 64 DICKRLRQTGSKVPIILLTAKDDISDRVAGLDAGADDYIVKPFNLEELLARVRANLRRNH 123 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + + + + + R+ + L +E +LEYLM++ + +++ QI ++G Sbjct: 124 EEDPDLLQFLDLSLNRNTREVFRGSRLIELTAKEFDLLEYLMSHPKQVLSRDQILERVWG 183 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D + N++E ++ LR KL + + + R +GY + Sbjct: 184 -YDFMGDSNIIEVYVRYLRLKLEAEQEKRLIQTVRGVGYVL 223 >gi|189500624|ref|YP_001960094.1| two component transcriptional regulator, winged helix family [Chlorobium phaeobacteroides BS1] gi|189496065|gb|ACE04613.1| two component transcriptional regulator, winged helix family [Chlorobium phaeobacteroides BS1] Length = 236 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 43/229 (18%), Positives = 90/229 (39%), Gaps = 12/229 (5%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + ++++D + S E L + D+ ++ L G Sbjct: 5 LILVVEDDRNLAKLLKYNLEKASYKCVLAESGEEALRLLADRAVDLVLLDVML--PGIDG 62 Query: 61 LELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 E+ R +R P++ ++ + F+ G+DD V KP RE+ R+ AI + Sbjct: 63 FEVCRKLRQQQLHRELPIVLLTAKGEEIDKVLGFELGIDDYVVKPFSPRELNLRIRAILK 122 Query: 118 RLKVSNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 R + + ++ G L E ++L L+ RG ++ + Sbjct: 123 RDRRGKQDVREVLVCDGLEVDIARHSVKLDGRDIVLTLMEFKLLAVLLKRRGHAQSRETL 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 S ++ + D+ + +++HI++LR+KL + + R LGY ++ Sbjct: 183 LSDVWDV-DKTINTRTIDTHITRLREKLGETG--KYIKTVRGLGYKLEE 228 >gi|332655153|ref|ZP_08420894.1| DNA-binding response regulator [Ruminococcaceae bacterium D16] gi|332516013|gb|EGJ45622.1| DNA-binding response regulator [Ruminococcaceae bacterium D16] Length = 222 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 42/223 (18%), Positives = 88/223 (39%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D +++ G+ + + L D ++ + Sbjct: 4 ILVVEDERAMREIIRDYLTAHGLECDLARDGQEALELLEEQDYDAVVLDV--LMPRLDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA--AIYRRL 119 + R +R S VP++ ++ + TL + G DD V KP +LA++ R Sbjct: 62 GVCRAVRRQSSVPILFLTALGGEEETLRGYALGADDYVTKPFSLAVLLAKLQALIRRSRG 121 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + G I+V + R G+ L RE +L L+ N+G+ +++ Q+ ++G Sbjct: 122 ERKTGVLSCGAIQVDTGARRCTAAGQEIKLSPREYELLLCLLRNQGQVLSRAQLLDKVWG 181 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 L D ++ V+ + LR L + + GY ++ Sbjct: 182 L-DFEGDDRAVDVRVRSLRAALGKAGKQ--IKTVFKAGYRLEE 221 >gi|296137486|ref|YP_003644728.1| two component transcriptional regulator, winged helix family [Thiomonas intermedia K12] gi|295797608|gb|ADG32398.1| two component transcriptional regulator, winged helix family [Thiomonas intermedia K12] Length = 240 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 43/229 (18%), Positives = 94/229 (41%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ A +G+ + + E +AR D+ ++ L G+ L Sbjct: 7 ILIVDDDGEIRNLLSAYLQKNGLRVTAVGDGKAMERALVAARIDLIVLDLML--PGDDGL 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R +RA S +P++ ++ + + G DD + KP RE+LAR+ I RR + Sbjct: 65 TLCRQLRAKSDIPVLMLTARSDETDRVVGLEMGADDYLTKPFSARELLARIKVILRRARS 124 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPR---------RERRILEYLMANRGKRVAKTQ 172 + +R + E R+L +++ + + + Q Sbjct: 125 LPVNFQPEDLREAHFAGWTLNTLHRHLISPAGVVVTLSGAEYRLLRIFLSHPNRVLNRDQ 184 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 + G + + ++ +S+LR++L + + + R +GY + Sbjct: 185 LVDLTQGR-EADPLDRSIDVQVSRLRQRLGDDPRDPVLIKTVRGMGYVL 232 >gi|229127229|ref|ZP_04256226.1| Two-component response regulator vanR [Bacillus cereus BDRD-Cer4] gi|228656345|gb|EEL12186.1| Two-component response regulator vanR [Bacillus cereus BDRD-Cer4] Length = 232 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 40/229 (17%), Positives = 86/229 (37%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + A +G + ++ E + ++ ++ ++ + Sbjct: 6 ILIVDDDQDIVRFVKANLMQEGFKVFSAHNGEESLEIINNNSIQLAILDIM--MPQMDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARVA 113 EL R IR +P++ +S S + F +G DD + KP E Sbjct: 64 ELCRRIREKHSLPIMFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 123 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 ++V + + + R + GE L + E IL + A + + +I Sbjct: 124 FNQHAVQVIEKKINIRGLEIDEASRTVMLYGETINLTKTEYDILFLMAAAKNRVFTIEEI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221 + +++ N V HI++LR K+ + + + +GY I+ Sbjct: 184 YESVWKERAYE-SNNTVMVHIARLRNKIEEDPKEPKFIQNVWGVGYKIE 231 >gi|167645552|ref|YP_001683215.1| two component transcriptional regulator [Caulobacter sp. K31] gi|167347982|gb|ABZ70717.1| two component transcriptional regulator, winged helix family [Caulobacter sp. K31] Length = 261 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 44/227 (19%), Positives = 88/227 (38%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++D G G ++ + E + D+ ++ L GE L Sbjct: 30 ILIVDDDPGIRDVVSDFLGRHGYVIDTASDSRTMEQALARGPVDLIVLDIML--PGEDGL 87 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R + A +I +S + + G DD + KP + RE+LAR+ A+ RR + Sbjct: 88 AICRRLSAADGPAIIMLSAMGEETDRIVGLELGADDYLPKPCNPRELLARIRAVLRRRQE 147 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRR--------ERRILEYLMANRGKRVAKTQI 173 + G ++ P+ E +L + + + + Q+ Sbjct: 148 PRTVDDGMGAACEFAGWRLDLVRRELRSPQSVVVNLSSGEFSLLRAFVERPQRVLTRDQL 207 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G + + ++ IS+LR+KL + G + + + R GY Sbjct: 208 LDLARGR-ESDAYDRAIDVQISRLRRKLDDGGGGELIRTIRSEGYMF 253 >gi|56962305|ref|YP_174030.1| two-component response regulator [Bacillus clausii KSM-K16] gi|56908542|dbj|BAD63069.1| two-component response regulator [Bacillus clausii KSM-K16] Length = 227 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 44/225 (19%), Positives = 87/225 (38%), Gaps = 10/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +D + ++ E + D ++ GE Sbjct: 6 ILVVDDDQSIADLLRDFLENDHFYVLTASNTEEAWEAFQQSAVDCLILDIM--MPGENGF 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYR 117 R IRA S VP++ +S + + G DD + K EI+ARV Sbjct: 64 AFCRRIRAKSDVPILFLSARSADVDKIRGLTLGGDDYIVKTASPGEIVARVKAVLRRSAS 123 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + E G + + R+ V G+ L +E +L+ + + + Q+ + Sbjct: 124 NQPPTETILEFGHLTLNLTTRELAVDGKNVMLTPKEYELLQLFLEHPRHVFSYDQLLDKL 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 + D +++ V H+S+LR+K+ N + + +GY + Sbjct: 184 W---DGVGDKHTVRVHLSRLREKIEANPNDPQYIVNVWGIGYRFE 225 >gi|229191197|ref|ZP_04318186.1| Two component transcriptional regulator, winged helix [Bacillus cereus ATCC 10876] gi|228592347|gb|EEK50177.1| Two component transcriptional regulator, winged helix [Bacillus cereus ATCC 10876] Length = 232 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 50/229 (21%), Positives = 81/229 (35%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD + + +G + E + S D+ ++ Sbjct: 6 ILIADDEVEIAELIGIHLEKEGYHVVKATDGEEAVLIIQSQPIDLVILDIM--MPKIDGY 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR +P+I +S S + G DD + KP E++ARV A RR Sbjct: 64 EVARQIRIKHNMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFSPIELVARVNAQLRRFLT 123 Query: 122 SNNRAETGPIR--------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 N + D R V GE L +E IL L ++ K + I Sbjct: 124 LNQPKVEEKKSVLETSGVAINLDQRKVNVYGEQIELTPKEFDILYLLASHPKKVYSVEHI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221 F ++ V HI LRKK+ D + + +GY+ + Sbjct: 184 FQQVWTGDYYDGGS-TVAVHIRTLRKKIGEDTRKDKLIKTVWGVGYTFN 231 >gi|157693669|ref|YP_001488131.1| response regulator [Bacillus pumilus SAFR-032] gi|157682427|gb|ABV63571.1| response regulator [Bacillus pumilus SAFR-032] Length = 231 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 47/227 (20%), Positives = 88/227 (38%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + D G + + E + + + ++ G + Sbjct: 5 ILVVEDDQDIGDLLQESLTRAGYEVLRAMNGEQALKFVDDS---LDLVILDVMMPGLSGI 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E + +RA S VP++ ++ S + +G DD + KP E+ ARV A RR V Sbjct: 62 ETCQQMRASSNVPILFLTAKSSTFDKTEGLLAGGDDYMTKPFSQEELHARVIAQLRRYTV 121 Query: 122 SNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + E V + + + + L E R+L+ LM+ R K + I+ Sbjct: 122 YQEKKEQEETFLVGGKLRVSEEFNEVWKENQQIKLSDLEYRMLKLLMSRRNKIFSAQNIY 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220 +++G N V HI KLR K+ + + ++ GY Sbjct: 182 ESVWGQPYFYCSNNTVMVHIRKLRAKIEDDPARPFYIKTEWGRGYRF 228 >gi|160880215|ref|YP_001559183.1| two component transcriptional regulator [Clostridium phytofermentans ISDg] gi|160428881|gb|ABX42444.1| two component transcriptional regulator, winged helix family [Clostridium phytofermentans ISDg] Length = 223 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 44/219 (20%), Positives = 96/219 (43%), Gaps = 3/219 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + + +G + N + L D+ ++ L Sbjct: 4 ILLVEDDPFIVNNLTEFLQSEGYIVSAVNGQKDALMLLKQEVYDIILLDISLK--DGNGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + I++ P+I ++ + + D G DD ++KP RE+L+R+ ++ RR Sbjct: 62 AVCKAIKSMGDTPVIFVTASGDEFSVVAGLDMGADDYISKPFRPRELLSRIKSVLRRCGK 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + E I+V ++ QG L E R+L ++NRG +++ ++ I+ + Sbjct: 122 VQSVIEIEGIQVDTEKGLVLKQGNEIFLSALEYRLLLVFLSNRGTVISRNKLLEEIWDIA 181 Query: 182 DEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYS 219 + V +N + ++ +LR+K+ + + + R LGY Sbjct: 182 GDFVNDNTLTVYVKRLREKIEDNPQEPTIIKTVRGLGYK 220 >gi|16801706|ref|NP_471974.1| two-component response phosphate regulator [Listeria innocua Clip11262] gi|16415181|emb|CAC97871.1| two-component response phosphate regulator [Listeria innocua Clip11262] Length = 236 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 47/233 (20%), Positives = 95/233 (40%), Gaps = 16/233 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A + G + L S + D+ ++ L + Sbjct: 4 ILVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLML--PEMDGI 61 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ + +R VP++ ++ + + G DD + KP RE++AR+ AI RR + Sbjct: 62 EVTKKLRQDKVGVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTE 121 Query: 121 VSNNRAETGPIR-----------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 E + D + +Q ++ L +E +L +L +RGK + Sbjct: 122 GKAEVTEEKTEDTEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFS 181 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 + Q+ ++ +D E +V+ H+S LR K+ + + + R GY ++ Sbjct: 182 RDQLLDTVW-NYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKME 233 >gi|260598567|ref|YP_003211138.1| DNA-binding transcriptional regulator BaeR [Cronobacter turicensis z3032] gi|260217744|emb|CBA32154.1| Transcriptional regulatory protein baeR [Cronobacter turicensis z3032] Length = 240 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 48/224 (21%), Positives = 90/224 (40%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + + N + D+ ++ L G L Sbjct: 13 ILVVEDEPKLGALLVDYLRAASYAPTLINHGDQVLPYVRQTPPDLILLDLML--PGTDGL 70 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R IR S+VP++ ++ L + G DD + KP RE++ARV I RR K Sbjct: 71 TLCREIRRFSEVPIVMVTARIEEIDRLLGLEIGADDYICKPFSPREVVARVKTILRRCKP 130 Query: 122 SNNRAE---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + P+ + + + L E R+L+ L + GK ++ Q+ + +Y Sbjct: 131 QRDLQTLDAQSPLVIDEGRFQASWRQKPLDLTPAEFRLLKTLSSEPGKVFSREQLLNHLY 190 Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + V + ++SHI LR+KL + + +GY + Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLEALDDDQPFIRAVYGVGYRWE 233 >gi|295402032|ref|ZP_06811993.1| two component transcriptional regulator, winged helix family [Geobacillus thermoglucosidasius C56-YS93] gi|312110946|ref|YP_003989262.1| transcriptional regulator [Geobacillus sp. Y4.1MC1] gi|294975923|gb|EFG51540.1| two component transcriptional regulator, winged helix family [Geobacillus thermoglucosidasius C56-YS93] gi|311216047|gb|ADP74651.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y4.1MC1] Length = 223 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 46/222 (20%), Positives = 88/222 (39%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L+DD + + G S + + D+ ++ Sbjct: 4 ILLVDDETRMLELLALYLSPKGYHCVKCESGLAAVQYLENHKADLVLLDIM--MPEMDGW 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E + IR S VP+I ++ + + G DD + KP E+LAR+ A+ RR Sbjct: 62 ETCKRIREFSDVPIIMVTARDQTLDIVKGLNIGADDYITKPFDEAELLARIEAVLRRSVG 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 ++ E + D Q E L +E IL + + + ++ QI +++G + Sbjct: 122 KRSKIEFQGLVWDEDEHKTHYQNEPIFLTPKEFAILGLFLKHPNRVFSREQIIVSLWG-Y 180 Query: 182 DEAVEENVVESHISKLRKKLRNKLGF--DPVDSKRFLGYSID 221 + EE ++SH+ +R+KLR + + +GY + Sbjct: 181 NANTEERTIDSHVKNIREKLRQVGFPIDQFLQTVWGVGYKWE 222 >gi|226358082|ref|YP_002787821.1| response regulator, CheY [Deinococcus deserti VCD115] gi|226319725|gb|ACO47719.1| putative response regulator, CheY [Deinococcus deserti VCD115] Length = 225 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 48/221 (21%), Positives = 85/221 (38%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD A V+ +G +E E D+ ++ L G L Sbjct: 5 ILVIDDDAGVRSLLQRGLSYEGFLVETAADGETGLAAVRDRPPDLVILDVML--PGLDGL 62 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ +R P++ ++ + + G DD V KP + ARV A RR + Sbjct: 63 EVLSRLRRVDANLPVVMLTARDRPDEQVRGLERGADDYVTKPFSFDVLAARVRAQLRRRE 122 Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + G G L +E R+L+ M + +K+ + +G Sbjct: 123 TDAPAVLRFGNLTLDPAGHSVSRDGREITLTAQEFRLLQAFMEQPERVQSKSVLLDRAWG 182 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 L + NVVE+++ +LR+KL + + R +GY + Sbjct: 183 LG-YLGDPNVVETYVKQLRQKLEGDGQTRLIHTIRGVGYVL 222 >gi|153853514|ref|ZP_01994894.1| hypothetical protein DORLON_00883 [Dorea longicatena DSM 13814] gi|149753669|gb|EDM63600.1| hypothetical protein DORLON_00883 [Dorea longicatena DSM 13814] Length = 229 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 43/227 (18%), Positives = 89/227 (39%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + D G ++E N + + D+ ++ L G Sbjct: 4 ILIVEDEEAIADLERDYLELSGFTVEVANDGDIGLQKALNEDYDLLILDLML--PGTDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R +R P++ +S + G DD + KP E++ARV A R Sbjct: 62 DICRQVRDVKNTPIVMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARYDR 121 Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N E +++ + R V GE +E +L +L ++ +K ++F Sbjct: 122 LTGSAAEKNKVIEIRGLKIDTTARRVWVNGEERTFTTKEFDLLTFLASHPNHVYSKEELF 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 I+ + + + V HI K+R+K+ + +++ +GY Sbjct: 182 REIWDM-ESIGDIATVTVHIKKIREKVEVDTSNPQYIETIWGVGYRF 227 >gi|134102532|ref|YP_001108193.1| two-component system, response regulator [Saccharopolyspora erythraea NRRL 2338] gi|133915155|emb|CAM05268.1| two-component system, response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 247 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 45/224 (20%), Positives = 91/224 (40%), Gaps = 10/224 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + A G + G + S D+ ++ L + Sbjct: 18 LVVDDEPNILELLTAALRLSGFEVRGAATGADALRAASEFGPDIVVLDVML--PDQDGFS 75 Query: 63 LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-----ILARVAAIY 116 + R +R VP++ ++ +++ + +G DD V KP E Sbjct: 76 VARRLREGGDLVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLDEVVLRLRAILRRVRP 135 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 L ++R + + + + G L E ++L YLM N K V+++QI Sbjct: 136 AHLDEPDSRLRYHDLELDEEAYEVRRGGRPVALSPTEFKLLRYLMVNAEKVVSRSQILDR 195 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ ++ + VVES+IS LR+K+ + + + R +GY + Sbjct: 196 VW-NYEFGGDSRVVESYISYLRRKI-DSTAPPLIHTIRGVGYVL 237 >gi|302339253|ref|YP_003804459.1| two component transcriptional regulator, winged helix family [Spirochaeta smaragdinae DSM 11293] gi|301636438|gb|ADK81865.1| two component transcriptional regulator, winged helix family [Spirochaeta smaragdinae DSM 11293] Length = 239 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 39/226 (17%), Positives = 83/226 (36%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + G + E + L D+ ++ G Sbjct: 8 ILVVDDEKELAKMICDYLSAMGFTSESASDGPRALRLIGEKEWDLLVLDVM--MPGLDGF 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R +RA +P+I ++ + F+ G DD V KP +E+ AR+ A+ RR Sbjct: 66 DVARKVRADRGLPIIFLTARAEESDRILGFEIGGDDYVTKPFSMKELAARIRAVLRRSAS 125 Query: 122 SNNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 E + + + L + IL+ L++ + + ++ Sbjct: 126 GEKEPEADTEIIRGALRLNPVSMKVRLGNDPVALTPGQFAILKQLVSYPDRVFTRNELLQ 185 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 + G + V E ++ HI +RK + + +++ +GY Sbjct: 186 EVSGDY-TGVYERTIDVHIKNIRKAIEDDPSHPRYIETIHGIGYRF 230 >gi|302527275|ref|ZP_07279617.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. AA4] gi|302436170|gb|EFL07986.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. AA4] Length = 226 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 54/219 (24%), Positives = 91/219 (41%), Gaps = 5/219 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L++D AL+ + D G ++ S E + S DV ++ L G L Sbjct: 6 LLVEDDALISEALSLALADQGCAVTQAASGEDALAMLESVSVDVVLLDLML--PGMDGLS 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + +R +P+I I+ Q + ++G DD V KP+ E+ AR+ A+ RR Sbjct: 64 VCHELRVRGDLPVIIITARADSQDVIAGLEAGADDYVTKPLVAGELAARIRALLRRAAPV 123 Query: 123 NNRAETGPIRVF-SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + G L R E R+L L A G+ V + Q+ I+G Sbjct: 124 RRCCLQVGDLLLSTHDETVSRHGVQILLTRTEFRLLAELAAAEGEVVTREQLLHRIWGR- 182 Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219 D +++ HI +LR+K+ V + R +GY Sbjct: 183 DYFGGTRLLDVHIRRLRRKVEPDPDCPRLVLTVRGIGYR 221 >gi|239979783|ref|ZP_04702307.1| two-component system response regulator [Streptomyces albus J1074] Length = 221 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 50/221 (22%), Positives = 93/221 (42%), Gaps = 5/221 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +LI+D ++ G + + E L R D+ ++ L G E Sbjct: 1 MLIEDDDAIRTALELSLTRQGHRVATAATGEEGLTLLREQRPDLIVLDVML--PGIDGFE 58 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR Q+P+I ++ + +SG DD V KP+ R + AR+ A+ RR + Sbjct: 59 VCRRIRRTDQLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGERE 118 Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 +N A + GE L E R+L L G+ +++ Q+ ++ Sbjct: 119 SNDAAVFGSLVIDRAAMTVTKNGEDLQLTPTELRLLLELSRRPGQALSRQQLLRLVW-EH 177 Query: 182 DEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 D + +V++ + +LR K+ + + + R +GY +D Sbjct: 178 DYLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRLD 218 >gi|229175383|ref|ZP_04302898.1| hypothetical protein bcere0006_44630 [Bacillus cereus MM3] gi|228608215|gb|EEK65522.1| hypothetical protein bcere0006_44630 [Bacillus cereus MM3] Length = 229 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 45/229 (19%), Positives = 89/229 (38%), Gaps = 11/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D + + + ++ +S E + ++ ++ L Sbjct: 4 ILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDYNLIILDIML--PKMNGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IRA +P++ +S + G DD + KP E++ARV A R + Sbjct: 62 EICKQIRAIKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121 Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + I + R + E +E +L + + + + + K Q+F Sbjct: 122 LSGNVSKQRDTLYIHGISIDQRARKVFINNEEISFTTKEFDLLTFFVTHPNQVLNKEQLF 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 I+GL D A + V HI KLR+K+ + +++ GY + Sbjct: 182 ERIWGL-DSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRFNV 229 >gi|282861073|ref|ZP_06270138.1| two component transcriptional regulator, winged helix family [Streptomyces sp. ACTE] gi|282563731|gb|EFB69268.1| two component transcriptional regulator, winged helix family [Streptomyces sp. ACTE] Length = 245 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 49/227 (21%), Positives = 95/227 (41%), Gaps = 15/227 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D A + D A +G ++ S + D+ ++ L G LE Sbjct: 22 LVVEDDATIVDAISARLRAEGFLVQTALDGPAAVDAAESWQPDLMVLDIML--PGFDGLE 79 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R ++A VP++ ++ L G DD + KP RE+ ARV + RR++ + Sbjct: 80 VCRRVQAQRPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRVERA 139 Query: 123 NNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 A T + R V+ E L E +L L +++ Q+ Sbjct: 140 ALAAVTPRSGILRLGELEIDHAQRRVRVRAEDVHLTPTEFDLLVCLANTPRAVLSREQLL 199 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + ++ D + V+SHI LR+K+ G + + + +GY+++ Sbjct: 200 AEVWDWADASG-TRTVDSHIKALRRKI----GAERIRTVHGVGYALE 241 >gi|229088212|ref|ZP_04220152.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock3-44] gi|228695108|gb|EEL48144.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock3-44] Length = 232 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 52/229 (22%), Positives = 85/229 (37%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD V D +G + + + S D+ ++ Sbjct: 6 ILIADDEVEVADLIAIHLEKEGYHVIKVADGKEAIRVIHSQPIDLVILDIM--MPKMDGY 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IRA +P+I +S S + G DD + KP E++ARV A RR + Sbjct: 64 EVTRQIRAQYHMPIIFLSAKTSDFDKVTGLVIGADDYMTKPFTPIELVARVNAQLRRFLM 123 Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 N ++ + R V E L +E IL L ++ K + I Sbjct: 124 LNQPKVEDNKSVLAIGGVVIYPEQRTVSVYEEQIELTPKEFDILYLLASHPKKVYSVENI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221 F ++ N V HI LRKKL +K + + +GY+ + Sbjct: 184 FQQVWAEDYYEG-RNTVMVHIRTLRKKLGEDKRKNKLIKTVWGVGYTFN 231 >gi|329934372|ref|ZP_08284451.1| two-component system response regulator [Streptomyces griseoaurantiacus M045] gi|329305968|gb|EGG49823.1| two-component system response regulator [Streptomyces griseoaurantiacus M045] Length = 230 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 48/226 (21%), Positives = 89/226 (39%), Gaps = 11/226 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +LI+D V+ G G E + E +++ D+ ++ L G LE Sbjct: 5 LLIEDDPAVRRGVTLGLRRRGHETEAVATGEDGLEALAASPPDLVLLDLML--PGMSGLE 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR SQVP++ +S + ++G DD + KP I AR+ A+ RRL S Sbjct: 63 VCRRIRETSQVPVVILSARGDDIDVVVGLEAGADDYIVKPSSDEVIEARMRAVMRRLAPS 122 Query: 123 NN-------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 G + + G L E ++L +L A + ++ Q+ Sbjct: 123 QPGPAAGAEPTVHGDLEIDRLALRVCRSGTEVTLAPSELKLLLFLSAWPERTFSRQQLLE 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 ++ + +V++ + ++R K+ + + R GY Sbjct: 183 QVW-EHSYYGDARLVDACVMRVRSKIEEDPRHPRHIQTVRGFGYRF 227 >gi|329890727|ref|ZP_08269070.1| response regulator [Brevundimonas diminuta ATCC 11568] gi|328846028|gb|EGF95592.1| response regulator [Brevundimonas diminuta ATCC 11568] Length = 231 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 46/224 (20%), Positives = 90/224 (40%), Gaps = 10/224 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++ G ++ +S + + A D+ ++ GE L Sbjct: 7 ILIVDDDASLRAALQDYLSGAGYAVRTADSGGAMDARLAEAAPDLVVLDVM--MPGEDGL 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R + + P++ +S + + G D + KP RE+LARV A+ RR + Sbjct: 65 SICRRL--QGRAPVLMLSAMGETTDRIVGLEVGAADYLPKPFEPRELLARVRAVLRRPAL 122 Query: 122 SNNRAETGPIRVFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + I R + G L E +L + + G+ +++ QI Sbjct: 123 LDEATDRPLIFEGWTLEVETRRLTDPAGAPVELTGGEFALLLTFLRSSGRILSRDQILEN 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G E + V+ +S+LR+KL +++ R GY Sbjct: 183 THGPLAENFD-RAVDLAVSRLRRKLDRPGQAPLIETVRGAGYRF 225 >gi|319788127|ref|YP_004147602.1| two component transcriptional regulator, winged helix family [Pseudoxanthomonas suwonensis 11-1] gi|317466639|gb|ADV28371.1| two component transcriptional regulator, winged helix family [Pseudoxanthomonas suwonensis 11-1] Length = 227 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 59/221 (26%), Positives = 103/221 (46%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 +L++D A +++ A +G +++ E ++ DV+ I+ L G ++ Sbjct: 3 ILLVEDEAPLRETLAARLKREGFAVDAAQDGEEGLYMGREVPFDVAIIDLGLPKMSGMEL 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119 ++ R P++ ++ S Q ++ G DD + KP H E+LAR+ A + R Sbjct: 63 IKALR--DEGKNFPVLILTARSSWQDKVEGLKQGADDYLVKPFHVEELLARLNALVRRAA 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S E GP+ + + V G L E ++LEYLM + G+ V+K + IY Sbjct: 121 GWSKPVLECGPVALDLAAQTVTVSGSNVDLTSYEYKVLEYLMMHAGELVSKADLTEHIY- 179 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D + NV+E I +LRKKL + P+++ R GY Sbjct: 180 QQDFDRDSNVLEVFIGRLRKKLDPEGELKPIETVRGRGYRF 220 >gi|282882277|ref|ZP_06290909.1| transcriptional regulatory protein WalR [Peptoniphilus lacrimalis 315-B] gi|281297871|gb|EFA90335.1| transcriptional regulatory protein WalR [Peptoniphilus lacrimalis 315-B] Length = 233 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 37/228 (16%), Positives = 86/228 (37%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D F +G ++ + ++ Sbjct: 5 ILVVDDEQAIADIIKFNFEREGYGVDIAKDGLEALNFVKDNTYSLILLDIM--MPKLNGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAA 114 + + IR + P+I ++ + + G DD V KP RE++ R Sbjct: 63 DTLKEIRKSHKTPVIMLTAREDEVDKVLGLELGADDYVVKPFSIRELIARVKAVLRRFGP 122 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + G + + + + + G++ L RE +L++L +N G ++ ++ Sbjct: 123 PTEEEGSEDEIITVGELEIDINKYEVKKNGKIIDLTLREFELLKFLSSNPGVVFSREELL 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSID 221 ++ ++ + V+ I +LR+K+ + + +KR +GY D Sbjct: 183 EKVW-EYEYYGDIRTVDVTIRRLREKVEDTSKDYKYILTKRGVGYYFD 229 >gi|224477938|ref|YP_002635544.1| putative response regulator [Staphylococcus carnosus subsp. carnosus TM300] gi|222422545|emb|CAL29359.1| putative response regulator [Staphylococcus carnosus subsp. carnosus TM300] Length = 233 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 46/224 (20%), Positives = 92/224 (41%), Gaps = 12/224 (5%) Query: 4 LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63 ++DD + D +G + L D+ ++ L G +E+ Sbjct: 7 VVDDEKPIADILEFNLKKEGYEVFCAYDGNDAIDLIYEEEPDIVLLDIML--PGRDGMEV 64 Query: 64 PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123 R +R ++P+I ++ S + + G DD V KP RE++ARV A RR Sbjct: 65 CREVRKKYEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRRYTQP 124 Query: 124 NRAETGPIR--------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + ++ D + +G+ L RE + YL + G+ + + + Sbjct: 125 AQEADNAPNEITIKDIVIYPDAYSIKKRGKDIELTHREFELFHYLANHMGQVMTREHLLQ 184 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218 ++G +D + V+ I +LR+K+ + + + ++R +GY Sbjct: 185 TVWG-YDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGY 227 >gi|165869483|ref|ZP_02214142.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|227815305|ref|YP_002815314.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|254755431|ref|ZP_05207465.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|164714923|gb|EDR20441.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|227006071|gb|ACP15814.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] Length = 232 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 40/229 (17%), Positives = 84/229 (36%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +G + + E + ++ ++ ++ + Sbjct: 6 ILIVDDDQDIVRFMNVNLMQEGFKVFSAYNGEEALEIINNNSIQLAILDIM--MPQMDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARVA 113 EL R IR +P+I +S S + F +G DD + KP E Sbjct: 64 ELCRRIREKHSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 123 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 ++V + + + R + GE L + E IL + A + + +I Sbjct: 124 FNQNAVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYEILYLMAAAKNRVFTTEEI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221 + +++ N V HI++LR K+ + + + +GY I+ Sbjct: 184 YESVWKERAYE-SNNTVMVHIARLRNKIEEDPKEPKFIQNVWGVGYKIE 231 >gi|153855183|ref|ZP_01996367.1| hypothetical protein DORLON_02381 [Dorea longicatena DSM 13814] gi|149752352|gb|EDM62283.1| hypothetical protein DORLON_02381 [Dorea longicatena DSM 13814] Length = 227 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 37/224 (16%), Positives = 90/224 (40%), Gaps = 6/224 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + ++ G +G + + + D++ I ++ Sbjct: 6 ILVVDDESRMRKLVKDFLGREGYQVLEAGDGMEAMEVFYDEK-DIALIILDVMMPRMDGW 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV--NKPIHHREILARVAAIYRRL 119 ++ R +R S+VP+I ++ + L F GVD+ + + Sbjct: 65 QVCREVRQSSKVPIIMLTARSEERDELQGFALGVDEYISKPFSPKILVARVNAILRRANV 124 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + G I + ++ G+ L +E +L Y + N+G +++ +I + ++ Sbjct: 125 LGGGDEIDAGGIVIDKAAHQVKIDGKEIELSFKEFELLSYFVENQGIALSREKILNNVWD 184 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 +D + +++H+ KLR KL K + + +GY + + Sbjct: 185 -YDYFGDARTIDTHVKKLRSKLGEKGN--YIKTIWGMGYKFEVD 225 >gi|330718004|ref|ZP_08312604.1| DNA-binding response regulator [Leuconostoc fallax KCTC 3537] Length = 235 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 48/230 (20%), Positives = 95/230 (41%), Gaps = 14/230 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + + L S D+ ++ L + Sbjct: 4 ILVVDDEKPISDIIKFNLTKEGYDVITAADGKEALSLYSDESPDLVLLDQML--PEVDGI 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR++ P+I ++ S + + G DD V KP +RE++ARV A RR KV Sbjct: 62 EVLRQIRSNDDTPVIMVTAKDSEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRQKV 121 Query: 122 SNNRAETGPI----------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + + + G L RE +L YL + G+ + + Sbjct: 122 TVQNTDAVVDSTEDIELGDLTIHPQAYMVSKNGVDIELTHREFELLYYLAQHIGQVMTRE 181 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + ++G +D + V+ + +LR+K+ + + + ++R +GY + Sbjct: 182 HLLQQVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPNWLATRRGVGYYL 230 >gi|157144972|ref|YP_001452291.1| DNA-binding transcriptional regulator BaeR [Citrobacter koseri ATCC BAA-895] gi|157082177|gb|ABV11855.1| hypothetical protein CKO_00702 [Citrobacter koseri ATCC BAA-895] Length = 240 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 50/224 (22%), Positives = 91/224 (40%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + I + + + D+ ++ L G L Sbjct: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLQYVHQTPPDLILLDLML--PGTDGL 70 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R IR S VP++ ++ L + G DD + KP RE++ARV I RR K Sbjct: 71 TLCREIRRFSDVPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 Query: 122 SNNRAE---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + P+ V +G++ L E R+L+ L GK ++ Q+ + +Y Sbjct: 131 QRELQQLDAQSPLIVDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190 Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + V + ++SHI LR+KL + + + +GY + Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 >gi|188588979|ref|YP_001921296.1| transcriptional regulatory protein ResD [Clostridium botulinum E3 str. Alaska E43] gi|188499260|gb|ACD52396.1| transcriptional regulatory protein ResD [Clostridium botulinum E3 str. Alaska E43] Length = 233 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 43/228 (18%), Positives = 95/228 (41%), Gaps = 10/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD V + +D ++ + ++ + D+ ++ Sbjct: 7 ILICDDNDTVNETIGTYLKNDEMTYISAYDGKEALEKFNAEKPDLVILDLM--MPKIFGT 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IR S VP+I ++ + + G DD + KP RE++ R+ I+RR+ Sbjct: 65 EVCKEIRKISNVPIIMLTAKGEEIDRIVGLEIGADDYIVKPFSPREVVTRIKTIFRRVGN 124 Query: 122 SNNRAE-------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 +N + D + + E + +E +IL L N G+ +++ +I Sbjct: 125 ANIDTNLNRKLVTFNNFNIDLDKYEIRLNKEKIDVTPKECQILYLLATNEGRVLSREEIL 184 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 ++G +D + VV++ I ++RKK+ + + + +GY + Sbjct: 185 DKVWG-YDYFGDTRVVDTQIKRIRKKIPEEGEKWSIKTVYGIGYKFEV 231 >gi|119468896|ref|ZP_01611921.1| phosphate regulon transcriptional regulatory protein phoB [Alteromonadales bacterium TW-7] gi|119447548|gb|EAW28815.1| phosphate regulon transcriptional regulatory protein phoB [Alteromonadales bacterium TW-7] Length = 229 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 41/223 (18%), Positives = 93/223 (41%), Gaps = 8/223 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD A +++ + + +G + D+ ++ L G ++ Sbjct: 6 LVVDDEAPIREMLVFVLEQNGFQAIEAEDYDSAIAAMVEPYPDMVLLDWML--PGGSGIQ 63 Query: 63 LPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 + + + + +P+I ++ + + + G DD V KP +E++AR+ A+ RR+ Sbjct: 64 IAKKFKQNEHTRQIPIIMLTARGEEEDKVRGLEVGADDYVTKPFSPKELMARIKAVIRRV 123 Query: 120 KVSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 ++ R+ +G + E R+L + M + + ++ Q+ + Sbjct: 124 SPTSLEEAIEVHGLRLDPISHRVTSEGNELDMGPTEFRLLHFFMTHPERVYSREQLLDHV 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G + VE+ V+ HI +LRK + V + R GY Sbjct: 184 WGT-NVYVEDRTVDVHIRRLRKAIGPLGHDRLVQTVRGAGYRF 225 >gi|325845344|ref|ZP_08168644.1| putative response regulator SaeR [Turicibacter sp. HGF1] gi|325488598|gb|EGC91007.1| putative response regulator SaeR [Turicibacter sp. HGF1] Length = 224 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 47/221 (21%), Positives = 85/221 (38%), Gaps = 10/221 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +++DD + + + +G S + + L + D+ ++ L Sbjct: 6 ILIVDDEIEIIELLETVLKHEGFSHIFHATTGTEALSLLKALNPDLVLLDVML--PDLSG 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +L + I H Q+P++ IS L F G DD + KP +E+ RV A + Sbjct: 64 HQLIKEIHQHRQIPVLFISAKTEEFDRLLGFALGADDYITKPFSAKEVAFRVKARLKTTT 123 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + E L +E ++L YL+ + K V+K QI ++G Sbjct: 124 KTIQFGNITITDG-----IVSKNNEPLDLTAKEYKLLMYLVRHANKIVSKEQICHEVWGE 178 Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + N + HI +LRKK+ + + + LGY Sbjct: 179 DYFEFD-NTISVHIRRLRKKIEVDPSKPKHITTIIGLGYKF 218 >gi|304404343|ref|ZP_07386005.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] gi|304347321|gb|EFM13153.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] Length = 229 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 43/227 (18%), Positives = 85/227 (37%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + + G + + + D+ ++ L Sbjct: 4 ILIIEDERTIAELQRDYLESHGYKADIEGRGDTGLRRALDGQYDLIILDLML--PNTDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR + +P+I IS + G DD + KP E++ARV A R Sbjct: 62 EICRRIRQEADIPIIMISAKKEEIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARYDR 121 Query: 122 SNNRAETGPI-------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + R ++ + L +E +L L + + K ++F Sbjct: 122 LTGDSREARESLTIRGLTINKLTRQVNIRDQDMLLTSKEFDLLLLLATHPNRVFTKEELF 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++GL + E + V HI +LR+K+ + +D+ +GY + Sbjct: 182 ERVWGL-ESVGESSTVTVHIRRLREKIELDPSNPQYIDTVWGVGYRL 227 >gi|148273519|ref|YP_001223080.1| putative two-component system response regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147831449|emb|CAN02409.1| putative two-component system response regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 283 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 46/226 (20%), Positives = 89/226 (39%), Gaps = 11/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D V + G +E + + D+ ++ L G L Sbjct: 33 ILVVEDDPTVNEVVCRYLKASGFQVETVADGLEAVRVATERMPDLVVLDRML--PGLDGL 90 Query: 62 ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAI 115 E+ R IRAH S VP++ ++ + ++ D+G DD + KP RE + V Sbjct: 91 EVCRRIRAHHPESPVPVVMLTALGQGEDRVNGLDAGADDYLAKPFSPRELVLRVRAVLRR 150 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 V GP + R+ G + L RE +L +L+ N + + + Sbjct: 151 TVPEAVPEPPFVAGPFVLDLGAREIHQAGVMLSLTSREFDLLAFLLRNPRRVFGRDDLLR 210 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++G E + + V H+ +LR+K+ + + + +GY Sbjct: 211 QVWGW--EIGDLSTVTVHVRRLREKIEADPAHPVLLGTVWGVGYRF 254 >gi|261340989|ref|ZP_05968847.1| phosphate regulon transcriptional regulatory protein PhoB [Enterobacter cancerogenus ATCC 35316] gi|288316853|gb|EFC55791.1| phosphate regulon transcriptional regulatory protein PhoB [Enterobacter cancerogenus ATCC 35316] Length = 229 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 39/224 (17%), Positives = 92/224 (41%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A +++ + +G + + D+ ++ L G L Sbjct: 5 ILVVEDEAPIREMVCFVLEQNGFQPIEAEDYDSAVNQLNEPWPDLILLDWML--PGGSGL 62 Query: 62 ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 + + I+ + +P++ ++ + + ++G DD + KP +E++AR+ A+ RR Sbjct: 63 QFIKHIKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + E + + + E ++L + M + + ++ Q+ + Sbjct: 123 ISPMAVEEVIEMQGLSLDPTSHRVMTGENPLDMGPTEFKLLHFFMTHPERVYSREQLLNN 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + VE+ V+ HI +LRK L V + R GY Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALELSGHDRMVQTVRGTGYRF 225 >gi|119486576|ref|ZP_01620626.1| Two component Transcriptional regulator, Winged helix family protein [Lyngbya sp. PCC 8106] gi|119456193|gb|EAW37325.1| Two component Transcriptional regulator, Winged helix family protein [Lyngbya sp. PCC 8106] Length = 253 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 42/226 (18%), Positives = 90/226 (39%), Gaps = 11/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD + ++ G + L + D+ ++ Sbjct: 16 ILIADDESAIRRILTTRLSMVGYEVVAAADGREALSLFETENPDLVVLDVM--MPKLNGY 73 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARVAA 114 + + IR S+VP+I ++ + + + G DD + KP + IL R+ Sbjct: 74 GVCQKIRTQSEVPIIMLTALGDVADRITGLELGADDYLTKPFSPKELEARIQAILRRLRE 133 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 VS + +R+ + R ++ PL E +LE L+ + G+ V++++I Sbjct: 134 TNANRDVSAETIQVDALRIDTIKRRVYKGEQLIPLTYIEFNLLELLLKHSGEAVSRSEIL 193 Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGY 218 ++G + VV+ H+++LR K+ + + + R +GY Sbjct: 194 QELWGYAPRRIADMRVVDVHVARLRAKIEEDQRNPEYILTVRGIGY 239 >gi|290474714|ref|YP_003467594.1| response regulator in two-component regulatory system with PhoR (or CreC), regulation of Pi uptake (OmpR family) [Xenorhabdus bovienii SS-2004] gi|289174027|emb|CBJ80814.1| response regulator in two-component regulatory system with PhoR (or CreC), regulation of Pi uptake (OmpR family) [Xenorhabdus bovienii SS-2004] Length = 229 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 38/224 (16%), Positives = 89/224 (39%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D +++ + +G + W S D+ ++ L G + Sbjct: 5 ILVVEDEVQIREMVCLVLEQNGYQTVEAEDYDVAVWRLSEPYPDLVLLDWML--PGGSGI 62 Query: 62 ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIY 116 +L + ++ S +P++ ++ + + D G DD + KP +E+ + Sbjct: 63 QLIKQMKRDSSTRDIPVMMVTARGEEEDRVRGLDVGADDYITKPFSPKELVARIKAVLRR 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + + + S QG+ + E ++L + M + + ++ Q+ + Sbjct: 123 VSPMSAEDIINMDGLILDSSSHRVSSQGQNVEMGPTEFKLLHFFMTHPERVYSREQLLNY 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + VE+ V+ HI +LRK L V + R GY Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALEVGGHDRMVQTVRGTGYRF 225 >gi|206970631|ref|ZP_03231583.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|206734267|gb|EDZ51437.1| DNA-binding response regulator [Bacillus cereus AH1134] Length = 232 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 41/229 (17%), Positives = 85/229 (37%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + A +G + ++ E + ++ ++ ++ + Sbjct: 6 ILIVDDDQDIVRFVKANLMQEGFKVFSAHNGEESLEIINNNSIQLAILDIM--MPQMDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARVA 113 EL R IR +P++ +S S + F +G DD + KP E Sbjct: 64 ELCRRIREKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 123 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 ++V + + + R + GE L + E IL + A R + +I Sbjct: 124 FNQNAVQVMEKKINIRGLEIDEVSRTVMLYGETMNLTKTEYDILHLMAAARNRVFTIEEI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + +++ N V HI++LR K+ + + +GY I+ Sbjct: 184 YESVWNERAYE-SNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIE 231 >gi|160881638|ref|YP_001560606.1| two component transcriptional regulator [Clostridium phytofermentans ISDg] gi|160430304|gb|ABX43867.1| two component transcriptional regulator, winged helix family [Clostridium phytofermentans ISDg] Length = 234 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 40/231 (17%), Positives = 81/231 (35%), Gaps = 13/231 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + DG + + + + ++ G L Sbjct: 7 ILVVDDDKEIAELVEIHLVSDGYPVFKAYNAMEGLEILQKENIKLVILDIM--MPGIDGL 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL---------ARV 112 + + IR S VP+I +S + + +G DD V KP + E++ Sbjct: 65 SMCKKIRETSTVPIIMLSAKSADIDKIIGLSTGADDYVIKPFNPLELMARVKSQLRRFTK 124 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + + + G+ L E IL L +N G+ + + Sbjct: 125 FNPSTYEDKNEKEITVTHLVINKETHVVMAYGKEVRLTPIEFDILYLLASNAGRVFSTDE 184 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 IF ++ N V HI +LR+K+ + + + + +GY I+ Sbjct: 185 IFERVWNEKMYEAN-NTVMVHIRRLREKIEMDSRNAEIIKTVWGVGYKIEK 234 >gi|138895267|ref|YP_001125720.1| two-component response regulator [Geobacillus thermodenitrificans NG80-2] gi|134266780|gb|ABO66975.1| Two-component response regulator [Geobacillus thermodenitrificans NG80-2] Length = 223 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 46/222 (20%), Positives = 88/222 (39%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L+DD + D G S + + D+ ++ Sbjct: 4 ILLVDDEKRMLDLLDLYLSPKGYHCVKCESGLAAIQYLENNKVDLVLLDIM--MPELDGW 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E + IR S VP+I ++ + G DD + KP E+LAR+ A+ RR Sbjct: 62 ETCKRIREFSNVPIIMVTARDQTTDIVQGLKIGADDYITKPFDESELLARIEAVLRRSVG 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 +++ E + D Q + L +E IL + + + ++ QI +++G + Sbjct: 122 KHSKMEFQGLVWDEDEYKVHYQNKPIFLTPKEFAILGLFLKHPNRVFSREQIIVSLWG-Y 180 Query: 182 DEAVEENVVESHISKLRKKLRNKLGF--DPVDSKRFLGYSID 221 + EE ++SH+ +R+KLR + + +GY + Sbjct: 181 NANTEERTIDSHVKNIREKLRQAGFPIDQFLQTVWGVGYKWE 222 >gi|302391634|ref|YP_003827454.1| two component transcriptional regulator, winged helix family [Acetohalobium arabaticum DSM 5501] gi|302203711|gb|ADL12389.1| two component transcriptional regulator, winged helix family [Acetohalobium arabaticum DSM 5501] Length = 235 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 45/229 (19%), Positives = 88/229 (38%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + +G + + D+ + L+ L Sbjct: 6 ILVVDDEENIVELVKFNLEKEGYQVFVTYDGQAALDKLQEE--DIDLLVLDLMLPEIGGL 63 Query: 62 ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VA 113 ++ R IR S +P+I ++ + + G DD V KP RE++AR Sbjct: 64 DICRQIRNDDELSDLPIIMLTAKEKEVDRILGLELGADDYVTKPFSPRELVARVKAILRR 123 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 K + + G I + + + + + +E +L L N GK + + + Sbjct: 124 TGSSGQKTDEDCIKLGEIVIDLNKYEVLLDDKQVNFTPKEFELLMLLAKNAGKVLTRNFL 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD--PVDSKRFLGYSI 220 I+G + + V+ HI + R+KL N L D +++ R +GY Sbjct: 184 LKEIWG-YGYNGDTRTVDVHIRRTRQKLNNNLAEDVEYIETVRGVGYRF 231 >gi|229191306|ref|ZP_04318292.1| DNA-binding response regulator [Bacillus cereus ATCC 10876] gi|228592111|gb|EEK49944.1| DNA-binding response regulator [Bacillus cereus ATCC 10876] Length = 225 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 43/223 (19%), Positives = 94/223 (42%), Gaps = 4/223 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L DD +++ +G + + + + ++ ++ Sbjct: 6 ILLADDDKHIRELLHYHLQKEGFKVFEAEDGKVAQDVLEKENIHLAIVDIM--MPFVDGY 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L IR + +P+I ++ L F SG DD + KP E++ R+ A+ RR ++ Sbjct: 64 TLCEEIRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQM 123 Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + T + G + + G+ LP +E +L L + G+ ++ ++ ++G+ Sbjct: 124 LSADIITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM 183 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 D +E V+ H+ +LR + + + + R LGY ++ N Sbjct: 184 -DFEGDERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLELN 225 >gi|149181603|ref|ZP_01860097.1| YclJ [Bacillus sp. SG-1] gi|148850717|gb|EDL64873.1| YclJ [Bacillus sp. SG-1] Length = 243 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 46/228 (20%), Positives = 88/228 (38%), Gaps = 12/228 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D V F +G+ E + D+ ++ L G + Sbjct: 13 LVVEDNESVTSMLEMFFIKEGIQGEFVHDGAEGYQRYKEGEWDLVILDWML--PGMDGVT 70 Query: 63 LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R IR Q+P+I ++ S + + G DD V KP ++AR+ A+ RR + Sbjct: 71 ICRKIREERTQIPIIMLTAKDSESDQVLGLELGADDYVTKPFSPLALMARIRAVTRRYQG 130 Query: 122 SNNRA-------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N T + L +E +L YL + + ++ Q+ Sbjct: 131 EKNNTAESTDISTTDFQISKETREVLLKGVPLTNLTPKEFDLLYYLSQHPRQVFSREQLL 190 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 ++G +D +E V+ HI +LR K+ + + + +GY D Sbjct: 191 ERVWG-YDFYGDERTVDVHIKRLRNKIGSN-EKPYLHTVWGVGYKFDE 236 >gi|49484576|ref|YP_041800.1| response regulator protein [Staphylococcus aureus subsp. aureus MRSA252] gi|257423843|ref|ZP_05600272.1| response regulator protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257426526|ref|ZP_05602928.1| response regulator protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257431808|ref|ZP_05608171.1| response regulator protein [Staphylococcus aureus subsp. aureus E1410] gi|257434768|ref|ZP_05610819.1| response regulator protein [Staphylococcus aureus subsp. aureus M876] gi|282902273|ref|ZP_06310166.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus C160] gi|282906702|ref|ZP_06314550.1| heme response regulator hssR [Staphylococcus aureus subsp. aureus Btn1260] gi|282909678|ref|ZP_06317487.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WW2703/97] gi|282911924|ref|ZP_06319720.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WBG10049] gi|282915220|ref|ZP_06322997.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus M899] gi|282920944|ref|ZP_06328662.1| two-component response regulator colocalized with HrtAB transporter [Staphylococcus aureus subsp. aureus C427] gi|282925850|ref|ZP_06333498.1| two-component response regulator colocalized with HrtAB transporter [Staphylococcus aureus subsp. aureus C101] gi|283959142|ref|ZP_06376583.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus A017934/97] gi|293497616|ref|ZP_06665470.1| two-component response regulator colocalized with HrtAB transporter [Staphylococcus aureus subsp. aureus 58-424] gi|293511195|ref|ZP_06669891.1| two-component response regulator colocalized with HrtAB transporter [Staphylococcus aureus subsp. aureus M809] gi|293549803|ref|ZP_06672475.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus M1015] gi|295428942|ref|ZP_06821566.1| two-component system response regulator colocalized with HrtAB transporter [Staphylococcus aureus subsp. aureus EMRSA16] gi|81696435|sp|Q6GE73|HSSR_STAAR RecName: Full=Heme response regulator hssR gi|49242705|emb|CAG41429.1| response regulator protein [Staphylococcus aureus subsp. aureus MRSA252] gi|257272861|gb|EEV04963.1| response regulator protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257276157|gb|EEV07608.1| response regulator protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257282687|gb|EEV12819.1| response regulator protein [Staphylococcus aureus subsp. aureus E1410] gi|257285364|gb|EEV15480.1| response regulator protein [Staphylococcus aureus subsp. aureus M876] gi|282312679|gb|EFB43083.1| two-component response regulator colocalized with HrtAB transporter [Staphylococcus aureus subsp. aureus C101] gi|282315359|gb|EFB45743.1| two-component response regulator colocalized with HrtAB transporter [Staphylococcus aureus subsp. aureus C427] gi|282320941|gb|EFB51275.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus M899] gi|282323620|gb|EFB53936.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WBG10049] gi|282326252|gb|EFB56556.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WW2703/97] gi|282329601|gb|EFB59122.1| heme response regulator hssR [Staphylococcus aureus subsp. aureus Btn1260] gi|282596732|gb|EFC01691.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus C160] gi|283788734|gb|EFC27561.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus A017934/97] gi|290918850|gb|EFD95926.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus M1015] gi|291096547|gb|EFE26805.1| two-component response regulator colocalized with HrtAB transporter [Staphylococcus aureus subsp. aureus 58-424] gi|291465821|gb|EFF08351.1| two-component response regulator colocalized with HrtAB transporter [Staphylococcus aureus subsp. aureus M809] gi|295127291|gb|EFG56933.1| two-component system response regulator colocalized with HrtAB transporter [Staphylococcus aureus subsp. aureus EMRSA16] gi|315193627|gb|EFU24023.1| response regulator protein [Staphylococcus aureus subsp. aureus CGS00] Length = 224 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 49/220 (22%), Positives = 99/220 (45%), Gaps = 4/220 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + + + + S E L R D++ ++ G + Sbjct: 5 LVVDDDPRILNYIASHLQTEHIDAFTQPSGEAALKLLEKQRVDIAVVDIM--MDGMDGFQ 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L ++ +P+I ++ +L F SG DD V KP +E++ R+ A+ RR ++ Sbjct: 63 LCNTLKNDYDIPVIMLTARDALSDKERAFISGTDDYVTKPFEVKELIFRIRAVLRRYNIN 122 Query: 123 NNRAETGPIRVFSDGR-DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 +N T + + +V + LP +E ++L L A + + QI I+G + Sbjct: 123 SNSEMTIGNLTLNQSYLELQVSNKTMTLPNKEFQLLFMLAARPKQIFTREQIIEKIWG-Y 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D +E V+ HI +LR++L+ +++ R GY ++ Sbjct: 182 DYEGDERTVDVHIKRLRQRLKKLNATLTIETVRGQGYKVE 221 >gi|238787963|ref|ZP_04631759.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia frederiksenii ATCC 33641] gi|238723911|gb|EEQ15555.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia frederiksenii ATCC 33641] Length = 239 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 38/224 (16%), Positives = 91/224 (40%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A +++ + +G + S D+ ++ L G + Sbjct: 15 ILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRLSEPFPDLVLLDWML--PGGSGI 72 Query: 62 ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 + + ++ +P++ ++ + + + G DD + KP +E++AR+ A+ RR Sbjct: 73 QFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRR 132 Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + E + + + + E ++L + M + + ++ Q+ + Sbjct: 133 ISPMAVEEVIEMQGLSLDPSSHRVMANEQALDMGPTEFKLLHFFMTHPERVYSREQLLNY 192 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + VE+ V+ HI +LRK L V + R GY Sbjct: 193 VWGT-NVYVEDRTVDVHIRRLRKALEVDGHDKMVQTVRGTGYRF 235 >gi|302530020|ref|ZP_07282362.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. AA4] gi|302438915|gb|EFL10731.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. AA4] Length = 227 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 45/219 (20%), Positives = 89/219 (40%), Gaps = 5/219 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + + +G + D+ ++ L G ++ Sbjct: 8 LVVDDDPALAEMLTIVLRGEGFDTAVVADGSRALPALRELKPDLVLLDLML--PGMNGID 65 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + IRA S VP++ ++ + +SG DD V KP +E++ARV A RR + Sbjct: 66 VCKAIRAESGVPIVMLTAKSDTVDIVLGLESGADDYVVKPFKPKELVARVRARMRRTEAE 125 Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + T + G + G+ PL E +L L + + + ++G + Sbjct: 126 PAESLTIGDLAIDVPGHEVTRDGKAIPLTPLEFDLLVALARKPRQVFTREVLLEQVWG-Y 184 Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219 A + +V H+ +LR K+ + V + R +GY Sbjct: 185 RHAADTRLVNVHVQRLRSKVEKDPEHPEVVLTVRGVGYK 223 >gi|299537509|ref|ZP_07050803.1| sensory transduction protein [Lysinibacillus fusiformis ZC1] gi|298727070|gb|EFI67651.1| sensory transduction protein [Lysinibacillus fusiformis ZC1] Length = 224 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 45/223 (20%), Positives = 91/223 (40%), Gaps = 6/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD A +++ DG + + + SA D+ ++ Sbjct: 4 ILVADDDANIRELVCLFLRKDGFTTMEAGDGKEALAIYGSAPIDLVVLDIM--MPTMDGW 61 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L + +R + PL+ ++ + F+ G DD + KP E+ RV A+ +R + Sbjct: 62 TLCKELRKMNTDLPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVKALLKRYR 121 Query: 121 VSNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + +++ +V LP +E +L L G+ + Q+ I+G Sbjct: 122 IGHSQTIQLGQVTLDRQTYKVMRGKDVISLPLKEFELLYKLAETPGQVYTREQLIDQIWG 181 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + D A + ++ HI +LR++ F +D+ R LGY ++ Sbjct: 182 I-DYAGDNRTIDVHIKRLRERFNTITDF-HIDTIRGLGYRLEV 222 >gi|289623891|ref|ZP_06456845.1| DNA-binding response regulator BaeS [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289648450|ref|ZP_06479793.1| DNA-binding response regulator BaeS [Pseudomonas syringae pv. aesculi str. 2250] gi|298486910|ref|ZP_07004964.1| Response regulator BaeR [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298158575|gb|EFH99641.1| Response regulator BaeR [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330868308|gb|EGH03017.1| DNA-binding response regulator BaeS [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 227 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 44/221 (19%), Positives = 83/221 (37%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + G S ++ + + ++ L G + Sbjct: 10 ILIVEDEPKLASLMRDYLIAAGYSTHCLSNGLEVVPAVRAKPPQLILLDIML--PGRDGM 67 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + +R+ S VP++ I+ L D G DD + KP RE + R Sbjct: 68 DICKELRSFSDVPIVMITARVEEIDRLLGLDLGADDYICKPFSPRE-MVARVKAILRRSS 126 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 S+ ++V G L E R+L + G+ ++ + +Y Sbjct: 127 SSEPHTPKGLQVDEAHYQASFNGVTLDLTPVELRLLATFARSPGRVFSRDHLLDRLYSDH 186 Query: 182 DEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221 V + V+SHI LR+KL G DP+ S +GY ++ Sbjct: 187 -RVVTDRTVDSHIRNLRRKLEQACPGQDPIQSLYGVGYKLE 226 >gi|289450569|ref|YP_003475161.1| response regulator receiver domain-containing protein [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289185116|gb|ADC91541.1| response regulator receiver domain protein [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 232 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 97/224 (43%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD +V + F ++G + S D+ ++ ++ + Sbjct: 7 ILICDDDPVVHESLSLYFDNEGFKHSSAYNGSEAIEHFHSDNPDLIVLD--MMMPEMNGV 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R IR S VP+I ++ + + G DD + KP RE++AR+ A+ RR+ Sbjct: 65 DVCREIRRMSNVPIIMLTAKSEEIDKVVCLEIGADDYITKPFSVREVVARIKAVLRRITE 124 Query: 122 SNNRAETGPIRVF----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + +V+GEV P +E IL L +N GK +++ I I Sbjct: 125 TPVTSSDCLKLPDLELTPFNYQVKVRGEVVPFTPKEFEILYMLASNPGKVISREDIMQKI 184 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +G ++ + +++H+ ++R+K+ + + LGY + Sbjct: 185 WG-YNYEGDLRTIDTHVKRIRQKINVDNAKWALSTVYGLGYKFE 227 >gi|283834288|ref|ZP_06354029.1| phosphate regulon transcriptional regulatory protein PhoB [Citrobacter youngae ATCC 29220] gi|291069814|gb|EFE07923.1| phosphate regulon transcriptional regulatory protein PhoB [Citrobacter youngae ATCC 29220] Length = 229 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 38/222 (17%), Positives = 93/222 (41%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D A +++ + +G + + D+ ++ L G G + Sbjct: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLVLLDWMLPGGSGLQF 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ + +P++ ++ + + ++G DD + KP +E++AR+ A+ RR+ Sbjct: 65 IKHLKREAMTRDIPIMMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVLRRIS 124 Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 E + + + + E ++L + M + + ++ Q+ + ++ Sbjct: 125 PMAVEEVIEMQGLSLDPTSHRVMTGEDPLDMGPTEFKLLHFFMTHPERVYSREQLLNHVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G + VE+ V+ HI +LRK L + V + R GY Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALEHSGHDRMVQTVRGTGYRF 225 >gi|282857214|ref|ZP_06266458.1| two component transcriptional regulator, winged helix family [Pyramidobacter piscolens W5455] gi|282585000|gb|EFB90324.1| two component transcriptional regulator, winged helix family [Pyramidobacter piscolens W5455] Length = 231 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 43/228 (18%), Positives = 88/228 (38%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + +G ++E L + + ++ L G Sbjct: 4 ILIVEDDRPIAELERDYLEANGFAVEIAFDGREGLRLARTEEYALLLLDVML--PGISGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R VP++ ++ + G DD V KP E++AR A + + Sbjct: 62 EICREVRKSKNVPVVMVTARKDDVDKIRGLGLGADDYVVKPFSPSELVARCRAHIQIHER 121 Query: 122 --------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + E +++ R V G L RRE +L +L AN ++ + Sbjct: 122 LSSGASSGAERPIEVKGLKILPLSRRVFVGGREVALARREYELLLFLAANPDIVFSRETL 181 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 F I+G D + V H++++R K+ + + +++ GY Sbjct: 182 FERIWGE-DHPGDAATVTVHVNRIRDKIEKDPSRPEYIETVWGAGYRF 228 >gi|261408536|ref|YP_003244777.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261284999|gb|ACX66970.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] Length = 231 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 47/226 (20%), Positives = 95/226 (42%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L+DD + +G + S + +QS + + ++ + Sbjct: 8 ILLVDDEEEIISFIQDSLELEGYHVLTAGSGQEAL-IQSKRQPSLIILDVM--MPEMDGI 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + +R +Q P++ +S S + +G DD + KP E+ AR+ A RR + Sbjct: 65 EVCKQLRETTQCPIVFLSARQSEVDRIKGLAAGGDDYLLKPFSLAELKARIHAHLRREQR 124 Query: 122 SNNRA-----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + + + G G PL +E +I+E L ++G+ ++ QI+ Sbjct: 125 IHTQKEQGILRFQALTIDCKGHAVSCNGHDLPLTNKEFQIVELLAMHQGQVFSREQIYEK 184 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 ++GL D +++ + HI K+R KL + + +GY D Sbjct: 185 LWGL-DADGDDSTITEHIKKIRAKLAAHAQNRSFIQTVWGIGYKWD 229 >gi|66731643|gb|AAY52009.1| VanR [Paenibacillus apiarius] Length = 231 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 47/229 (20%), Positives = 90/229 (39%), Gaps = 10/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D ++ ++ + + + D++ ++ L G L Sbjct: 5 ILVVDDEHEIADLVELYLKNENYTVFKYYTAKEALECIDKTDLDLAILDIML--PGASGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + IR P+I ++ + + G DD + KP E++ARV A RR K Sbjct: 63 AICQKIRDKHTYPIITLTAKDTEVDKITGLTIGADDYITKPFRPLELIARVKAQLRRYKK 122 Query: 122 SNNRAETGPIRVFS-------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N E + + + + + L E IL L N+G V+ Q+F Sbjct: 123 YNGVTEQNENVIVHSGLVININTHECFLNEKQLSLTPTEFSILRILCENKGNVVSSEQLF 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDW 222 I+G + N + HI LR+K+ + + + +GY I+ Sbjct: 183 HEIWGDEYFSKSNNTITVHIRHLREKMNDTIDNPKYIKTVWGVGYKIEK 231 >gi|301056320|ref|YP_003794531.1| DNA-binding response regulator [Bacillus anthracis CI] gi|300378489|gb|ADK07393.1| DNA-binding response regulator [Bacillus cereus biovar anthracis str. CI] Length = 229 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 51/229 (22%), Positives = 88/229 (38%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++++ F + + + + D+ ++ L Sbjct: 5 ILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIML--PELDGW 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR-------EILARVAA 114 + R IR S+VP+I ++ TL F+ G DD V KP +L Sbjct: 63 SVCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKV 122 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + L+ ++ I V R V L E IL Y M N G + + Q+ Sbjct: 123 TKQLLENEDDTLSIHGIHVHFPSRTVTVNKTDINLTHTEFEILAYFMKNPGIVLTREQLI 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 S I+G ++ A ++ V SHI LR KL K + + GY + N Sbjct: 183 SRIWG-YEFAGDDRTVNSHIRNLRNKLGEK--AKYITTVVRTGYKFEGN 228 >gi|300789808|ref|YP_003770099.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299799322|gb|ADJ49697.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 227 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 45/219 (20%), Positives = 90/219 (41%), Gaps = 5/219 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + + +G + D+ ++ L G ++ Sbjct: 8 LVVDDDPALAEMLTIVLRGEGFDTAVVADGSRALPALRELKPDLVLLDLML--PGMNGID 65 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + IRA S VP++ ++ + +SG DD V KP +E++ARV A RR + Sbjct: 66 VCKAIRAESGVPIVMLTAKSDTVDIVLGLESGADDYVVKPFKPKELVARVRARMRRTEAE 125 Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + T + G + +G+ PL E +L L + + + ++G + Sbjct: 126 PAESLTIGDLAIDVPGHEVTREGKAIPLTPLEFDLLVALARKPRQVFTREVLLEQVWG-Y 184 Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219 A + +V H+ +LR K+ + V + R +GY Sbjct: 185 RHAADTRLVNVHVQRLRSKVEKDPEHPEVVLTVRGVGYK 223 >gi|295090383|emb|CBK76490.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Clostridium cf. saccharolyticum K10] Length = 225 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 45/225 (20%), Positives = 95/225 (42%), Gaps = 11/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D +++ A D G ++ D+ ++ L Sbjct: 5 ILIIEDEIAIQNIVRAFLEDAGYTVYSAGDGLEGIETFRRCDPDLVLLDLML--PKIDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYR 117 + I+R S+ P+I ++ + + FD DD + KP +L R+ + Sbjct: 63 AVCEILRKESRTPIIMLTARDDDASQMKGFDVLADDYIIKPFSMPLVLRRIEAVLRRTEQ 122 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + I + ++ + V + L RE IL+ L+ N GK ++ + ++ Sbjct: 123 GTEEEPSVIRYKEITLDAENYEVLVGTDEVSLTSREFEILKLLLENPGKVFSRESLLDSV 182 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +G ++ ++ +V +HI +RKKL G D +++ R +GY I+ Sbjct: 183 WG-YEYYGDQKIVNTHIKNIRKKL----GVDYIETIRGVGYKIEK 222 >gi|295132377|ref|YP_003583053.1| two-component system response regulator [Zunongwangia profunda SM-A87] gi|294980392|gb|ADF50857.1| two-component system response regulator [Zunongwangia profunda SM-A87] Length = 227 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 42/225 (18%), Positives = 87/225 (38%), Gaps = 13/225 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L+DD + + +G + ++ + + ++ G + Sbjct: 8 ILLVDDEPDILEIVGYNLSAEGYQVITADNGAEAVKVAKKKSPHLIILDVM--MPGMDGI 65 Query: 62 ELP---RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AI 115 E R I + ++ + + FD+G DD + KPI + ++++V Sbjct: 66 EACEQMRKIPELEDTIITFLTARGEDYSQMAGFDAGADDYITKPIKPKVLVSKVKALLRR 125 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 +R + +N + G I + D E LPR+E +L L + GK + I Sbjct: 126 FRDEETGSNIVKVGEIVINRDEYKVVKNKEEMILPRKEFELLSLLASKPGKVFKREDILD 185 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + V ++ HI KLR+K+ + + + +GY Sbjct: 186 KVWGN-EVVVGGRTIDVHIRKLREKIGDDS----FKTVKGVGYKF 225 >gi|320008595|gb|ADW03445.1| two component transcriptional regulator, winged helix family [Streptomyces flavogriseus ATCC 33331] Length = 245 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 47/227 (20%), Positives = 95/227 (41%), Gaps = 15/227 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D A + D A +G ++ + + D+ ++ L G LE Sbjct: 22 LVVEDDATIVDAISARLRAEGFLVQTALDGPAAVDAAEAWQPDLMVLDIML--PGFDGLE 79 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R ++A VP++ ++ L G DD + KP RE+ ARV + RR++ + Sbjct: 80 VCRRVQAQRPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRVERA 139 Query: 123 NNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 A T + R V+ + L E +L L +++ Q+ Sbjct: 140 ALAAVTPRSGILRLGELEIDHAQRRVRVRADDVHLTPTEFDLLVCLANTPRAVLSREQLL 199 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + ++ D + V+SHI LR+K+ G + + + +GY+++ Sbjct: 200 AEVWDWADASG-TRTVDSHIKALRRKI----GAERIRTVHGVGYALE 241 >gi|228475155|ref|ZP_04059881.1| transcriptional regulatory protein [Staphylococcus hominis SK119] gi|314936205|ref|ZP_07843552.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus hominis subsp. hominis C80] gi|228270766|gb|EEK12168.1| transcriptional regulatory protein [Staphylococcus hominis SK119] gi|313654824|gb|EFS18569.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Staphylococcus hominis subsp. hominis C80] Length = 236 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 45/230 (19%), Positives = 99/230 (43%), Gaps = 14/230 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + G ++ E + ++ ++ L + +E Sbjct: 6 LVVDDEQSIVTLLKYNLETAGYIVDVAYDGEEALKKVKEVKPELIVLDVML--PKKDGIE 63 Query: 63 LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + IR+ VP++ ++ + + G DD + KP RE++ARV AI RR ++ Sbjct: 64 VCKTIRSDKNLVPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRRSQI 123 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPL---------PRRERRILEYLMANRGKRVAKTQ 172 +N + + ++ E F + +E +L YL+ +G+ + + Sbjct: 124 ANEVVKDDVDDEDIVIDNIRIRPEFFEVYRDDTLLELTPKEFELLLYLIERQGRVITREH 183 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221 + ++++ ++ A + +V+ HIS LR KL + + R LGY ++ Sbjct: 184 MLNSVW-NYEFAGDSRIVDVHISHLRDKLEENPKQPKLIKTVRGLGYKLE 232 >gi|206578805|ref|YP_002237485.1| transcriptional regulatory protein BaeR [Klebsiella pneumoniae 342] gi|288934410|ref|YP_003438469.1| two component transcriptional regulator, winged helix family [Klebsiella variicola At-22] gi|290508614|ref|ZP_06547985.1| two-component system, OmpR family, response regulator BaeR [Klebsiella sp. 1_1_55] gi|206567863|gb|ACI09639.1| transcriptional regulatory protein BaeR [Klebsiella pneumoniae 342] gi|288889139|gb|ADC57457.1| two component transcriptional regulator, winged helix family [Klebsiella variicola At-22] gi|289778008|gb|EFD86005.1| two-component system, OmpR family, response regulator BaeR [Klebsiella sp. 1_1_55] Length = 240 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 50/224 (22%), Positives = 89/224 (39%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + I G + N + + ++ L G L Sbjct: 13 ILIVEDEPKLGQLLIDYLQAAGYAPTLINHGDKVLPYVRQTPPHLILLDLML--PGTDGL 70 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R IR S VP++ ++ L + G DD + KP RE++ARV I RR K Sbjct: 71 TLCREIRRFSDVPVVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 Query: 122 SNNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + P+ V + ++ L E R+L+ L GK ++ Q+ + +Y Sbjct: 131 QRDLQALDAQSPLIVDEGRFQASWRDKLLDLTPAEFRLLKTLSQEPGKVFSREQLLNHLY 190 Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + V + ++SHI LR+KL + + +GY + Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLEALDAEQSFIRAVYGVGYRWE 233 >gi|114462377|gb|ABI75119.1| transcriptional regulator OmpR family [Cylindrospermopsis raciborskii T3] Length = 272 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 44/229 (19%), Positives = 90/229 (39%), Gaps = 12/229 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS-----AREDVSAIEAFLIGKG 57 ++++D L+++ + +G + L + + L+ Sbjct: 44 LIVEDEELIREMLVVALEGEGYEVVTAKDGRCAVELIRNLETQPGELSFDLLVLDLMLPQ 103 Query: 58 EKVLELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 L++ R++ + +P++ +S S + + G DD + KP RE++AR A+ Sbjct: 104 INGLDICRLLRHQGNSIPILILSAKGSETDRVLGLEVGADDYLTKPFSVREMVARCRALL 163 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQG----EVFPLPRRERRILEYLMANRGKRVAKTQ 172 RR + SN E + L +E R+LE M+ + ++ Q Sbjct: 164 RRQRFSNLPLIPTLKYKDISLNPQECRVLVRGREVSLSPKEFRLLELFMSYARRVWSREQ 223 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + ++G D + V+ HI LR+KL + + + + R GY Sbjct: 224 LLDQVWG-PDFVGDSKTVDVHIRWLREKLELDPSHPEYIVTVRGFGYRF 271 >gi|297585569|ref|YP_003701349.1| winged helix family two component transcriptional regulator [Bacillus selenitireducens MLS10] gi|297144026|gb|ADI00784.1| two component transcriptional regulator, winged helix family [Bacillus selenitireducens MLS10] Length = 236 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 48/228 (21%), Positives = 94/228 (41%), Gaps = 11/228 (4%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + +++DD + D +G + + ++ L Sbjct: 5 LILVVDDEKPIADILKFGLEKEGFDVMVAYDGNEAVEKAKKHVPALILLDIML--PYRDG 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ R +R +P+I ++ S + + G DD V KP RE++ARV A RR + Sbjct: 63 MEVCREVRKEHDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELVARVKANLRRNQ 122 Query: 121 VSNNRAETGPIRVF-------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 S +ETG + D +GE L RE ++ YL + G+ + + + Sbjct: 123 RSAEDSETGTKNIDVGVLSIQPDAYLVTKRGEAIELTHREFELIHYLARHIGQVMTREHL 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220 A++G +D + V+ + +LR+K+ + + ++R +GY Sbjct: 183 LQAVWG-YDYFGDVRTVDVTVRRLREKVEDNPSSPLWIVTRRGVGYYF 229 >gi|126651117|ref|ZP_01723327.1| transcription response regulator-like protein [Bacillus sp. B14905] gi|126591955|gb|EAZ86021.1| transcription response regulator-like protein [Bacillus sp. B14905] Length = 220 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 49/223 (21%), Positives = 95/223 (42%), Gaps = 9/223 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D +++ ++E + ++ D+ ++ Sbjct: 5 ILVVEDDLEIQELIKQFLMTQNYTIEVASDGVEGIKRLNTQSFDLILLDVM--MPNLNGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119 E+ +++R S +P+I ++ Q + FD G+DD + KP ++ RV A Sbjct: 63 EVAKMLRNQSNIPIIFLTALEEEQDQMKGFDLGIDDYITKPFSFHVLIRRVQAVLRRSNH 122 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 K N + V DG V E PL +E IL+ L+ N K + + I ++G Sbjct: 123 KNWGNHLNFNELNVDCDGYKAYVNKEEIPLTTKEFEILQLLLHNEKKVLTREIIVEKVWG 182 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D + E ++++HI LRKKL + + + +GY ID Sbjct: 183 -YDYSGETRMIDTHIKNLRKKLNLP----YIKTVKGIGYKIDE 220 >gi|116626085|ref|YP_828241.1| two component transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116229247|gb|ABJ87956.1| two component transcriptional regulator, winged helix family [Candidatus Solibacter usitatus Ellin6076] Length = 230 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 52/223 (23%), Positives = 92/223 (41%), Gaps = 9/223 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L+DD A + +G ++E + D+ ++ L G Sbjct: 3 ILLVDDDAELASLLSEFLRREGFTVEAAHEGNRGLEKALQPGIDLVVLDVML--PGIDGF 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117 E+ + +R S+VP++ ++ + + G DD + KP + R I A + R Sbjct: 61 EILKRLRQRSKVPVLMLTARGEDVDRIVGLELGADDYLAKPFNPRELAARIRAILRRYER 120 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + +R ET I + R+ G+ L E ILE LM + G+ +++ + Sbjct: 121 DTPATGHRIETNGIVLDPGTREVTAGGKKIELTTFEFDILEMLMRSAGRVLSRDALMENF 180 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 Y + ++ HIS LRKKL N G D + + R +GY Sbjct: 181 YNRKATPFD-RSIDMHISHLRKKLEN--GDDLIKTIRGVGYQF 220 >gi|332530194|ref|ZP_08406142.1| osmolarity response regulator [Hylemonella gracilis ATCC 19624] gi|332040386|gb|EGI76764.1| osmolarity response regulator [Hylemonella gracilis ATCC 19624] Length = 244 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 38/230 (16%), Positives = 82/230 (35%), Gaps = 14/230 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++D +G + + + D+ ++ GE L Sbjct: 12 ILVVDDDARIRDLLRRYLTQEGFEVFLAEDGKALTRILLRESVDLIVLDLM--MPGEDGL 69 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILAR 111 + R +R A+ + P+I ++ + + G DD + KP + RE Sbjct: 70 SICRRLRAANDRTPIIMLTAKVEDVDRIVGLEVGADDYLGKPFNPRELLARINAVLRRRP 129 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 GP R GE PL E +L+ L+ + + +++ Sbjct: 130 APEAPGAPSSEQEVVAFGPYVFDLSARTLRKDGEELPLTTGEFAMLKALVRHPRQPMSRE 189 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++ G + + ++ +S+LRK + + + + +GY Sbjct: 190 KLAQQARGR-EFEPFDRSLDVQVSRLRKLIELDPASPRYIQTVWGVGYVF 238 >gi|322389821|ref|ZP_08063363.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC 903] gi|321143481|gb|EFX38917.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC 903] Length = 217 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 45/220 (20%), Positives = 92/220 (41%), Gaps = 7/220 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D L+++G + G + + +L D+ ++ L L Sbjct: 3 ILIVEDEVLIREGMSDYLMECGYEVFEAGDGQEALYLFHREAPDLVLLDIQLPI--LNGL 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IR S VP++ ++ + L F D + +L + Sbjct: 61 EVLKTIRKTSSVPVLMLTAFHDEDYKLTAFGEMADGY-LEKPFSLSLLKVRIEAIFKKLQ 119 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + G RV + + G+ + +E ILEYL+ + GK ++QI A++ Sbjct: 120 PSRVFTYGEARVDFESYTASLAGQAISMNAKELEILEYLLQHEGKARTRSQILDAVWKET 179 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +E + V++ +I +LRKKL D + + R +GY ++ Sbjct: 180 EEIPFDRVIDVYIKELRKKLEL----DCIVTVRNVGYKLE 215 >gi|331673604|ref|ZP_08374367.1| transcriptional regulatory protein BaeR [Escherichia coli TA280] gi|331068877|gb|EGI40269.1| transcriptional regulatory protein BaeR [Escherichia coli TA280] Length = 240 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 43/224 (19%), Positives = 88/224 (39%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + I + + + D+ ++ L G L Sbjct: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLML--PGTDGL 70 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 L R IR S +P++ ++ L + G DD + KP RE++ARV + Sbjct: 71 TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + P+ + + ++ L E R+L+ L GK ++ Q+ + +Y Sbjct: 131 QRELQQQDAESPLIIDEGRFQASWRSKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190 Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + V + ++SHI LR+KL + + + +GY + Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 >gi|285017066|ref|YP_003374777.1| two-component system regulatory protein phop [Xanthomonas albilineans GPE PC73] gi|283472284|emb|CBA14790.1| probable two-component system regulatory protein phop [Xanthomonas albilineans] Length = 227 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 60/221 (27%), Positives = 102/221 (46%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 +L++D A +++ A +G +++ E ++ DV I+ L G ++ Sbjct: 3 ILLVEDEAPLRETLAARLKREGFAVDAAQDGEEGLYMGREVPFDVGIIDLGLPKMSGMEL 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119 ++ R + P++ ++ S Q ++ G DD + KP H E+LARV A + R Sbjct: 63 IKALR--DEGKKFPVLILTARSSWQDKVEGLKQGADDYLVKPFHVEELLARVNALLRRAA 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S E GP+ + + V G L E ++LEYLM + G+ V+K + IY Sbjct: 121 GWSKPTLECGPVALDLAAQTVSVSGSNVDLTSYEYKVLEYLMMHAGELVSKADLTEHIY- 179 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D + NV+E I +LRKKL P+++ R GY Sbjct: 180 QQDFDRDSNVLEVFIGRLRKKLDPDGELKPIETVRGRGYRF 220 >gi|282899348|ref|ZP_06307317.1| Two component Transcriptional regulator, Winged helix family [Cylindrospermopsis raciborskii CS-505] gi|281195805|gb|EFA70733.1| Two component Transcriptional regulator, Winged helix family [Cylindrospermopsis raciborskii CS-505] Length = 249 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 44/229 (19%), Positives = 90/229 (39%), Gaps = 12/229 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS-----AREDVSAIEAFLIGKG 57 ++++D L+++ + +G + L + + L+ Sbjct: 21 LIVEDEELIREMLVVALEGEGYEVMTAKDGRCAVELIRNLETQPGELSFDLLVLDLMLPQ 80 Query: 58 EKVLELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 L++ R++ + +P++ +S S + + G DD + KP RE++AR A+ Sbjct: 81 INGLDICRLLRHQGNSIPILILSAKGSETDRVLGLEVGADDYLTKPFSMREMVARCRALL 140 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQG----EVFPLPRRERRILEYLMANRGKRVAKTQ 172 RR + SN E + L +E R+LE M+ + ++ Q Sbjct: 141 RRQRFSNLPLIPTLKHKDISLNPQECRVLVRGREVSLSPKEFRLLELFMSYARRVWSREQ 200 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + ++G D + V+ HI LR+KL + + + + R GY Sbjct: 201 LLDQVWG-PDFVGDSKTVDVHIRWLREKLELDPSHPEYIVTVRGFGYRF 248 >gi|261856844|ref|YP_003264127.1| PhoB family transcriptional regulator [Halothiobacillus neapolitanus c2] gi|261837313|gb|ACX97080.1| two component transcriptional regulator PhoB, winged helix family [Halothiobacillus neapolitanus c2] Length = 230 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 44/222 (19%), Positives = 89/222 (40%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++++D +++ G G L + + S D+ ++ L G G + Sbjct: 6 ILIVEDEKPIREMVTFALGRAGYDLIEASDVSEAFEQLSHKLPDLVLLDWMLPGASGIEF 65 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118 + VP++ ++ + + ++G DD + KP RE++AR+ A Sbjct: 66 ARRMKRDEITRDVPIVMLTARGEEEDKVSGLEAGADDYITKPFSPRELMARIKAVLRRAS 125 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 E +R+ + + E R+L + M + + ++TQ+ I+ Sbjct: 126 PDSEGGVIEVAGLRLDPESHRVTGGSVDIEVGPTEFRLLTFFMTHPERVFSRTQLLDRIW 185 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G + VEE V+ HI +LRK L + + R +GY + Sbjct: 186 GR-NAYVEERTVDVHILRLRKALVPSGFDALIQTVRGVGYRL 226 >gi|251779288|ref|ZP_04822208.1| regulatory protein VanR [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083603|gb|EES49493.1| regulatory protein VanR [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 236 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 40/233 (17%), Positives = 82/233 (35%), Gaps = 15/233 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++D +G + E + D+ ++ + Sbjct: 7 ILIVDDEKEIRDLVEIYLKSEGYLTVKACNGEEALNMIREQNVDLVILDVM--MPKLNGI 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----------REILA 110 + IR ++P+I +S + + G DD + KP + R Sbjct: 65 DTCLKIREEREMPIIMLSAKSEDIDKILGLNMGADDYITKPFNPLELVARVKSQLRRFYK 124 Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 K N E + + + + + + L E IL L NRGK + Sbjct: 125 FNTKHMEDEKEEENIIEIDELTINLETHEVILNNNLVKLTPTEFDILLLLAKNRGKVFSI 184 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDW 222 I+ +++ + +N V HI K+R+K+ + + + +GY I+ Sbjct: 185 ENIYESVWNQ-EFMSSDNTVMVHIRKIREKIESDPRTPKFIKTVWGVGYKIEK 236 >gi|218439203|ref|YP_002377532.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] gi|218171931|gb|ACK70664.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] Length = 224 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 41/221 (18%), Positives = 91/221 (41%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G + + D+ ++ L G L Sbjct: 5 ILVVEDEGKLAQFIELELKYEGYQVTVAPDGLSGLTTARESNPDLILLDWML--PGISGL 62 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-HREILARVAAIYRRL 119 E+ + +R P+I ++ + + D+G DD + KP + A + R Sbjct: 63 EICKRLRQTGNKVPIILLTAKDEISDRVTGLDAGADDYIIKPFSLEELLARVRANLRRTS 122 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + + + +R+ R+ + L +E +LEYLM++ + + + QI ++G Sbjct: 123 ENNADEVQFMDLRLNRSSREVYRANRLIELTAKEFDLLEYLMSHPRQVLTREQILERVWG 182 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D + N++E ++ LR KL N + + R +GY + Sbjct: 183 -YDFMGDSNIIEVYVRYLRLKLENNQEKRLIQTVRGIGYVL 222 >gi|195953525|ref|YP_002121815.1| two component transcriptional regulator, winged helix family [Hydrogenobaculum sp. Y04AAS1] gi|195933137|gb|ACG57837.1| two component transcriptional regulator, winged helix family [Hydrogenobaculum sp. Y04AAS1] Length = 225 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 40/219 (18%), Positives = 97/219 (44%), Gaps = 5/219 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D L+ + F +G ++ + D+ ++ + ++ Sbjct: 6 LIVEDDELLLETLEKGFRHEGFEVDIAKDGFQALQKAKTNSYDIIILDVVI--PKIDGVK 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLKV 121 + + +R S++P+I ++ L+ L+ ++G DD + KP +E++ RV + R KV Sbjct: 64 VCKQLRLQSEIPIIMLTAKSQLEDKLEGLEAGADDYITKPFSFKELIMRVKTVLRRYNKV 123 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + + +G+ L +E +L+ L N K + + + + ++G+ Sbjct: 124 QEEKIVLKDLTMDLKDFKVFYKGKAINLTPKEFELLKVLAQNPNKTIRREVLLNKVWGIA 183 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + N+V+ +I +R KL +K + + R GY + Sbjct: 184 -SDYDSNIVDVYIKNIRNKLEDKP-PKLILTIRGRGYML 220 >gi|148272229|ref|YP_001221790.1| putative two-component system response regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830159|emb|CAN01088.1| putative two-component system response regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 226 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 40/220 (18%), Positives = 87/220 (39%), Gaps = 5/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + +G A+ D+ ++ L G + Sbjct: 5 ILVVDDDTALAEMIGIVLRTEGFEPSFCGDGGQALAAFHDAKPDLVLLDLML--PGLDGI 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ +IRA S VP+I ++ + +SG DD + KP + +E++AR+ R Sbjct: 63 QVCDLIRAESGVPIIMLTAKSDTADVVKGLESGADDYIVKPFNPKELVARIRTRLRPAAA 122 Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 ++ V +G + E L E +L L + + + + ++G Sbjct: 123 ASPGLLQVGDLVVDVEGHEVRRGEERINLTPLEFDLLHALASRPQQVFTREMLLEQVWG- 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVD-SKRFLGYS 219 + + +V H+ +LR K+ + + + R +GY Sbjct: 182 YQYKADTRLVNVHVQRLRAKVEDDPDNPRIVMTVRGVGYR 221 >gi|149011938|ref|ZP_01833086.1| response regulator [Streptococcus pneumoniae SP19-BS75] gi|225857655|ref|YP_002739166.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae P1031] gi|147763893|gb|EDK70826.1| response regulator [Streptococcus pneumoniae SP19-BS75] gi|225725560|gb|ACO21412.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae P1031] Length = 235 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 42/230 (18%), Positives = 88/230 (38%), Gaps = 15/230 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L+DD + +G S + + L + D ++ L +E Sbjct: 6 LLVDDEEHILKLLDYHLSKEGFSTQLVTNGRKALALAETEPFDFILLDIML--PQLDGIE 63 Query: 63 LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILAR 111 + + +RA + P++ +S + + G DD + KP R Sbjct: 64 VCKRLRAKGVKTPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELLARVKAVLRRTKG 123 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 +++N G ++V+ + + ++ L +E +L YLM + + + Sbjct: 124 KQEGDDSDNIADNSWLFGTLKVYPERHEVYKANKLLSLTPKEFELLLYLMKHPNMTLTRE 183 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++ I+G +D E +V+ HI KLR+K+ + + + R GY Sbjct: 184 RLLERIWG-YDFGQETRLVDVHIGKLREKIEDNPKAPQFIRTIRGYGYKF 232 >gi|326383263|ref|ZP_08204951.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395] gi|326198013|gb|EGD55199.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395] Length = 225 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 41/220 (18%), Positives = 87/220 (39%), Gaps = 5/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A + + + ++G R D+ ++ L G + Sbjct: 5 ILVVDDDAALAEMLTIVLKNEGFEPFVVGDGTQALTAVREVRPDLVLLDLML--PGMNGI 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120 ++ R++R+ S VP++ ++ + +SG DD + KP +E++AR+ A R Sbjct: 63 DVCRVLRSDSGVPIVMLTAKSDTVDVVLGLESGADDYMVKPFKPKELVARIRARLRRTED 122 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 GP+ + G L E +L L + + + ++G Sbjct: 123 DPAELLAIGPVEIDVPAHKVTRDGVPISLTPLEFDLLVALARKPRQVFTRDVLLEQVWG- 181 Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219 + + +V H+ +LR K+ + + V + R +GY Sbjct: 182 YRHPADTRLVNVHVQRLRAKVEIDPENPEIVLTVRGVGYK 221 >gi|311032119|ref|ZP_07710209.1| two-component response regulator [Bacillus sp. m3-13] Length = 236 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 43/226 (19%), Positives = 86/226 (38%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +++DD + D + +G ++ ++ E D+ ++ + Sbjct: 6 ILMVDDEQSIIDMMKLVLTKEGFQQVDTCSTGEMALHKLKHHAYDLILLDI--MLPDMTG 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAI 115 E+ + IR + P+ +S S L F G DD + KP + R + + Sbjct: 64 YEICQAIRKTTDAPIFFLSAKTSDLDKLTGFAHGGDDYITKPFNPLEVVARIKVQLSRYL 123 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + E G + + V GE L + +L + N + K Q++ Sbjct: 124 KTTTSKKEDVLEFGRFNLNLQSAELTVLGESVVLSGQLYHLLVFFCKNPNRIFTKEQLYY 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++ + V+EN V HI KLR+K+ + + + R +GY + Sbjct: 184 HVW-KDNILVDENTVMVHIRKLREKIEENPSKPEYIKTVRGIGYKL 228 >gi|290770163|gb|ADD61922.1| putative protein [uncultured organism] Length = 241 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 32/222 (14%), Positives = 84/222 (37%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + DG + + D+ ++ L Sbjct: 15 ILIVEDDSFLNKMLAYNLTADGYGVTSALNARTAAEAIRQREFDLVLLDINL--PDGNGF 72 Query: 62 ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL ++I H +I ++ + ++ G D + KP R + ++ A++ L+ Sbjct: 73 ELCKLIKPQHPDTIVIFLTANDQESDQIRGYEVGAVDYITKPFVIRALQRKIKAMFAMLE 132 Query: 121 VSNNRAETGPI---RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + + + G+ L E ++L N + + + Q+ + Sbjct: 133 HHKPAKDIYDDGRLFLDFSEQMASLNGKPLTLSPMEYKMLNLFRKNPRQVLTRGQLLEKL 192 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 + + + V+E+ + + IS++R K+ + G + + +GY Sbjct: 193 WDIDERFVDEHTLTTSISRIRSKIESDGGAPYIKTVYGMGYQ 234 >gi|220908785|ref|YP_002484096.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 7425] gi|219865396|gb|ACL45735.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7425] Length = 224 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 50/221 (22%), Positives = 99/221 (44%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + +G + + L A+ D++ ++ L G + Sbjct: 5 ILLVEDEVKLARFIQLELDSEGYRVTVAHDGMSGLSLAREAQPDLAILDWML--PGLTGI 62 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119 EL R +RA +P+I ++ + + D+G DD V KP E+LAR+ A R Sbjct: 63 ELCRRLRATGNKIPVILLTARDEVGDRVTGLDAGADDYVVKPFSIEELLARIRAHLRRTQ 122 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +V + + + + R+ L +E +LEYL++N + + QI ++G Sbjct: 123 EVDEDILQFEDLSLNRRTREVRRGQRSIELTAKEFDLLEYLLSNPRQVYTRDQILEKVWG 182 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D + N++E ++ LR KL + + + R +GY++ Sbjct: 183 -YDFMGDSNIIEVYVRYLRLKLEEQGEKRLIHTVRGVGYAL 222 >gi|149909265|ref|ZP_01897921.1| Response regulator [Moritella sp. PE36] gi|149807582|gb|EDM67530.1| Response regulator [Moritella sp. PE36] Length = 228 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 38/222 (17%), Positives = 87/222 (39%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D +++ G + ++ ++ L G G K Sbjct: 5 ILVVEDELAIREMLCFALEQKGFDVVEAGDYNEAVDRLVEPYPNLILLDWMLPGGSGIKY 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ + S +P++ ++ + + + G DD + KP +E++AR+ A+ RR+ Sbjct: 65 IKHLKSQPHLSAIPVVMLTARGEEEDKVKGLEVGADDYITKPFSPKELIARLNAVMRRVA 124 Query: 121 VSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++ V + E ++L + M + + ++ Q+ ++ Sbjct: 125 PMTQDTVIDIHGLQLDPVAHRVSANDTVIDIGPTEFKLLHFFMTHPERVYSREQLLDNVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G+ + VE+ V+ HI +LRK L V + R GY Sbjct: 185 GM-NVYVEDRTVDVHIRRLRKALTPSEHDKYVQTVRGAGYRF 225 >gi|150019834|ref|YP_001312088.1| two component transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149906299|gb|ABR37132.1| two component transcriptional regulator, winged helix family [Clostridium beijerinckii NCIMB 8052] Length = 230 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 44/227 (19%), Positives = 83/227 (36%), Gaps = 15/227 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD + +G S + + D ++ L Sbjct: 5 ILVIDDDKDIVKLITKSLSYEGFGTISAYSGKEALCVLKENNIDFIILDIM--MPDMDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R IR P++ +S + + G DD + KP +E+ +R+ A +R++ Sbjct: 63 DVCRSIRKSYNAPILFLSARDKDIDKIVGLEIGADDYMTKPFSIQELNSRIRANFRKVDR 122 Query: 122 SNNRAETGPIRV---------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + + L +E +IL LM N + + + Sbjct: 123 LFKEWNELSPNREKIDSPLILNDKTFEAFLNNKKLNLSTKEFQILSMLMHNPNNVLTRER 182 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 I+ ++G DE E N V HI +RKKL +D + + +GY Sbjct: 183 IYEYVWG--DEYGELNTVTVHIKNIRKKLG--PEYDFIKTIWGIGYK 225 >gi|326383367|ref|ZP_08205054.1| putative OmpR family two-component response regulator [Gordonia neofelifaecis NRRL B-59395] gi|326197773|gb|EGD54960.1| putative OmpR family two-component response regulator [Gordonia neofelifaecis NRRL B-59395] Length = 224 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 55/221 (24%), Positives = 94/221 (42%), Gaps = 5/221 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L+DD + + +G ++ S DV ++ G E Sbjct: 4 LLVDDDPAIAETVRRTLVAEGWVVDTATDGLTGLQKALSEPFDVVVLDIM--MPGRNGYE 61 Query: 63 LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120 + R +R P++ ++ D FD G DD + KP ++AR+ A R Sbjct: 62 VVRDLRRAQVWTPVLMLTAKDGEYDQADAFDFGADDYLTKPYSAVVLVARLRALARRGAP 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 G + + + L RRE +LE+LM N+G+ V KTQI +++ + Sbjct: 122 ERPAVMTAGSLSLDPSAHVVKRGDTELSLTRREFALLEFLMRNKGQAVTKTQIVDSVWDV 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + +ENVVE +IS LRK++ G + + R +GY +D Sbjct: 182 -NYTGDENVVEVYISYLRKRIDAPFGCKSIQTVRGVGYRLD 221 >gi|323359178|ref|YP_004225574.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Microbacterium testaceum StLB037] gi|323275549|dbj|BAJ75694.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Microbacterium testaceum StLB037] Length = 227 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 51/225 (22%), Positives = 94/225 (41%), Gaps = 9/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + D L +G +E D+ ++ L G E Sbjct: 5 LIVEDEPDLADPLAYLLRREGYEVEIAEDGALALSAFHDRGADIVLLDLML--PGMPGTE 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +R S VP+I ++ S + + G DD V KP RE+LAR+ A+ RR Sbjct: 63 VCRQLRLSSHVPIIMLTAKDSEVDIVVGLELGADDYVTKPYSTRELLARMRAVLRRRTPD 122 Query: 123 NNRAETG-----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + + + D V G +P +E +LE LM N G+ + + Q+ + Sbjct: 123 DADLDDRILSGGRVTLDIDRHTVAVDGNEINMPLKEFELLEVLMRNAGRVLTRGQLIDRV 182 Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 +G D + ++ HI ++R ++ + + R LGY + Sbjct: 183 WGT-DYFGDTKTLDVHIKRIRSRIEQSPSEPAMLVTVRGLGYRFE 226 >gi|307329899|ref|ZP_07609053.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] gi|306884510|gb|EFN15542.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] Length = 246 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 49/229 (21%), Positives = 93/229 (40%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V++ +G + E S ++ ++ + L Sbjct: 13 ILIVDDEPAVREALQRSLVFEGYATETAVDGLDALDKVGSYDPELIVLDV--LMPRMDGL 70 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 R +RA P++ ++ ++ + D+G DD + KP E+LAR+ A+ RR Sbjct: 71 TAARRLRATGVTLPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELLARLRALLRRSS 130 Query: 121 V---------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + G +R+ RD G L R E +LE +A+ + + + Sbjct: 131 YTGLQGAALPEGDVMAFGDLRMDLTTRDVTRGGRRVELTRTEFTLLEMFLAHPRQVLTRE 190 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 QI A++G FD N ++ ++ LR+K V + R +GY + Sbjct: 191 QILKAVWG-FDFEPSSNSLDVYVMYLRRKTEAAGEPRLVHTVRGVGYVL 238 >gi|302036900|ref|YP_003797222.1| transcriptional regulatory protein CusR [Candidatus Nitrospira defluvii] gi|300604964|emb|CBK41297.1| Transcriptional regulatory protein CusR [Candidatus Nitrospira defluvii] Length = 227 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 46/222 (20%), Positives = 93/222 (41%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D A + ++ +++ ++ E L + D+ ++ L L Sbjct: 3 ILLVEDDADLAQFIRKGLKEERYAVDVASNGEQGFELGIANPYDLIILDIML--PVLDGL 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L R +R+ P++ ++ ++Q + D G DD + KP E+LAR A+ RR Sbjct: 61 SLCRRLRSTGVTAPVLLLTARDTVQDKVSGLDLGADDYLTKPFAFAELLARARALLRRGG 120 Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 T + G L +E +LE+L+ N+ + + +T I ++ Sbjct: 121 PQLQARLTAADLELDPATHRVCRGGNEIALTNKEYALLEFLLRNKNRVLTRTAIIEHVWD 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + N+V++HI LR K+ + + R GY ++ Sbjct: 181 IS-YDPMTNIVDAHIRSLRAKMDRDFSPALITTVRGAGYMLE 221 >gi|170077473|ref|YP_001734111.1| two-component response regulator, OmpR subfamily protein [Synechococcus sp. PCC 7002] gi|190358881|sp|P32040|Y851_SYNP2 RecName: Full=Probable transcriptional regulatory protein SYNPCC7002_A0851 gi|169885142|gb|ACA98855.1| two-component response regulator, OmpR subfamily protein [Synechococcus sp. PCC 7002] Length = 251 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 47/233 (20%), Positives = 100/233 (42%), Gaps = 17/233 (7%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARE-------DVSAIEAFLI 54 ++++D A+++D + ++G + ++ + + D+ ++ L Sbjct: 21 ILVVEDEAVIRDMIVMGLEEEGYEVFFADNGRTGLNMLQNPEFNAPDMPLDLVILDIML- 79 Query: 55 GKGEKVLELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA 113 L+L R + + +P++ +S S + + G DD + KP RE++AR Sbjct: 80 -PEVNGLDLCRFLRYQGNTIPILVLSAKASETDRVLGLEVGADDYLTKPFSLRELVARCR 138 Query: 114 AIYRRLKVSNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 A+ RR + + + + F + V+GE L +E R+LE M+ + Sbjct: 139 ALLRRQQFIRSTPKNSVRQFKDISLFPEECRVTVRGEEVSLSPKEYRLLELFMSYPRRVW 198 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++ Q+ ++G D + V+ HI LR+KL + + + + R GY Sbjct: 199 SRDQLIEQVWGA-DFLGDTKTVDVHIRWLREKLELDPSQPEYLITVRGFGYRF 250 >gi|85708491|ref|ZP_01039557.1| phosphate regulon response regulator [Erythrobacter sp. NAP1] gi|85690025|gb|EAQ30028.1| phosphate regulon response regulator [Erythrobacter sp. NAP1] Length = 229 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 53/223 (23%), Positives = 107/223 (47%), Gaps = 4/223 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +L++D + + F ++G ++ + L S D+ ++ + G G +V Sbjct: 6 LLLVEDDPALSELLEYRFQNEGYNVRCTGDGDEAMVLASEDVPDLIILDWMIEGTSGIEV 65 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 R + + VP+I ++ + + ++G DD + KP RE+LARVAA+ RR++ Sbjct: 66 CRRLRRDKETAHVPIIMLTAREAEDDRVRGLETGADDYLTKPFSPRELLARVAAVMRRIR 125 Query: 121 V--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + E G I++ + +G L E R+L++ M + G+ ++ Q+ ++ Sbjct: 126 PALAGETIEVGDIKLDPVAHKVQRRGRALQLGPTEYRLLKFFMESPGRVFSRGQLLDGVW 185 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 G +E V+ HI +LRK + + DP+ + R GY+++ Sbjct: 186 GTG-SDIELRTVDVHIRRLRKAIGLEGAKDPIRTVRSAGYALE 227 >gi|320333199|ref|YP_004169910.1| winged helix family two component transcriptional regulator [Deinococcus maricopensis DSM 21211] gi|319754488|gb|ADV66245.1| two component transcriptional regulator, winged helix family [Deinococcus maricopensis DSM 21211] Length = 225 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 54/219 (24%), Positives = 92/219 (42%), Gaps = 5/219 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++I+D + +G + E D+ ++ L LE Sbjct: 8 LVIEDEKDIARFIELELAAEGYATEVAFDGVTGLSKFREVNPDLVILDLML--PVLDGLE 65 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR S P+I ++ ++Q ++ DSG DD + KP E+LARV A RR+ + Sbjct: 66 VARRIRKTSNTPIIILTAKDNIQDKVEGLDSGADDYLVKPFSIEELLARVRAHLRRVNPA 125 Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + DGR+ G L +E +LE L N GK ++ +I ++ Sbjct: 126 VTGEVRVADLVMNLDGREIFRGGRRVELSAKEFELLELLARNPGKVFSRFEIEEKVW--P 183 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + NVV+ +I LR+KL + + R +GY + Sbjct: 184 EYTGGSNVVDVYIGYLRRKLEEGGERRLIHTVRGVGYVL 222 >gi|239941691|ref|ZP_04693628.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239988150|ref|ZP_04708814.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] gi|326778967|ref|ZP_08238232.1| two component transcriptional regulator, winged helix family [Streptomyces cf. griseus XylebKG-1] gi|320010461|gb|ADW05311.1| two component transcriptional regulator, winged helix family [Streptomyces flavogriseus ATCC 33331] gi|326659300|gb|EGE44146.1| two component transcriptional regulator, winged helix family [Streptomyces cf. griseus XylebKG-1] Length = 225 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 45/219 (20%), Positives = 91/219 (41%), Gaps = 5/219 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + + +G + A+ D+ ++ L G +E Sbjct: 6 LVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLML--PGRDGIE 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R+IRA S VP++ ++ + +SG DD + KP +E++AR+ A RR + Sbjct: 64 VCRLIRAESGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEEP 123 Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 T + G + +G+ L E +L L + + + ++G + Sbjct: 124 APEQLTIGDLVIDVAGHSVKREGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWG-Y 182 Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219 A + +V H+ +LR K+ + V + R +GY Sbjct: 183 RHAADTRLVNVHVQRLRSKVEKDPERPEIVVTVRGVGYK 221 >gi|82703349|ref|YP_412915.1| two component transcriptional regulator [Nitrosospira multiformis ATCC 25196] gi|82411414|gb|ABB75523.1| two component transcriptional regulator, winged helix family [Nitrosospira multiformis ATCC 25196] Length = 234 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 44/222 (19%), Positives = 89/222 (40%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D +++ ++ + E + + D+ ++ L G Sbjct: 5 ILVVEDEPAIQELISYSLRQAKHTVSSTKNAEEAMKIINHTLPDLVLLDWMLPGMSGADF 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118 + R +P+I ++ + +SG DD + KP RE+ + R Sbjct: 65 ARMLRRAARTKDIPIIMLTARADESDKVTGLESGADDYITKPFSPRELLARIKAVLRRRA 124 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + +++ E G +R+ S L E R+L YLM + + +++Q+ ++ Sbjct: 125 PEAADDVVEIGGLRLDSATHRVTANEIEVVLGPTEFRLLHYLMTHSERVHSRSQLLDQVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G VE+ V+ HI +LRK L N V + R GY + Sbjct: 185 GDH-VFVEDRTVDVHIRRLRKALENVDKDGLVQTVRGSGYRL 225 >gi|325002114|ref|ZP_08123226.1| two-component response regulator [Pseudonocardia sp. P1] Length = 225 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 45/219 (20%), Positives = 87/219 (39%), Gaps = 5/219 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + + +G + + DV ++ L G ++ Sbjct: 6 LVVDDDPALAEMLTIVLRGEGFETAVVSDGTRALPAVRDMQPDVVLLDLML--PGMNGID 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IRA S VP++ ++ + +SG DD V KP +E++AR+ A RR++ Sbjct: 64 VCRAIRAESGVPIVMLTAKSDTVDVVLGLESGADDYVVKPFKPKELVARIRARVRRIETE 123 Query: 123 NNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 G I + G L E +L L + + + ++G + Sbjct: 124 PAEQLSIGEIDIDVPAHQVTRGGRPIALTPLEFDLLVALARKPRQVFTREVLLEQVWG-Y 182 Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219 A + +V H+ +LR K+ + V + R +GY Sbjct: 183 RHAADTRLVNVHVQRLRSKVERDPERPEVVLTVRGVGYK 221 >gi|295115391|emb|CBL36238.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [butyrate-producing bacterium SM4/1] Length = 234 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 44/232 (18%), Positives = 83/232 (35%), Gaps = 14/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D DG + + + + + ++ G L Sbjct: 6 ILVVDDEKEIADLVEICLVSDGYRVFKAENAKEGLDILDRENIHLVLLDIM--MPGMDGL 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH----------HREILAR 111 E+ R IR + +P+I +S + + +G DD V KP + + Sbjct: 64 EMCRKIRETNNIPIIMLSARSTDLDKILGLGTGADDYVVKPFNPLELTARVKSQLRRYTQ 123 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + L+ + N + + D V E L E IL L +N G+ + Sbjct: 124 LNPQSSALQSAKNEISIRGLVINKDNHKVTVYDEEIKLTPIEFDILYLLASNPGRVFSTD 183 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 +IF ++ N V HI +LR K++ + + +GY I+ Sbjct: 184 EIFEKVWNEKVYEAN-NTVMVHIRRLRGKMKEDTRQNKIITTVWGVGYKIEK 234 >gi|167756876|ref|ZP_02429003.1| hypothetical protein CLORAM_02425 [Clostridium ramosum DSM 1402] gi|237734586|ref|ZP_04565067.1| two-component system response regulator [Mollicutes bacterium D7] gi|167703051|gb|EDS17630.1| hypothetical protein CLORAM_02425 [Clostridium ramosum DSM 1402] gi|229382406|gb|EEO32497.1| two-component system response regulator [Coprobacillus sp. D7] Length = 223 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 48/221 (21%), Positives = 97/221 (43%), Gaps = 5/221 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD +++ +G + ++ E + + D+ I+ E Sbjct: 6 LVVDDEKDIRELINFYLNKEGFEVLEASNGEEALEIFENEYIDLGIIDVM--MPVMDGFE 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L ++ VP+I ++ + L F G DD V KP E++ARV A+ +R V+ Sbjct: 64 LVENLKEFKDVPVIMLTAKGESKDKLRGFSVGADDYVVKPFDPTELMARVRAVLKRYSVN 123 Query: 123 NNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + D + Q E+ LP ++ ++ L + + ++ Q+ I+G+ Sbjct: 124 TSNIIKLNEVEFDGDKYEIRYQSEIIHLPLKQFELVFELAKHPDQIFSREQLIEKIWGM- 182 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 D + V+ HI ++R+ L + GF V + R LGY ++ Sbjct: 183 DYDGFDRTVDVHIKRIRENLGHLPGFK-VVTVRGLGYKVEV 222 >gi|88856681|ref|ZP_01131337.1| putative two-component system response regulator [marine actinobacterium PHSC20C1] gi|88814142|gb|EAR24008.1| putative two-component system response regulator [marine actinobacterium PHSC20C1] Length = 266 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 44/224 (19%), Positives = 92/224 (41%), Gaps = 8/224 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D V + G + D+ ++ L G E Sbjct: 43 LVVEDDPTVLEVTSTYLRAAGFIVNTAIDGFGALDAAERFHPDLIVLDRML--PGIDGSE 100 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR+ VP+I ++ S + ++G DD ++KP RE++ RV +I RR Sbjct: 101 VCRRIRSRGDVPIILLTAMGSPDERIAGLEAGADDYISKPFSPRELVLRVQSILRRSIGD 160 Query: 123 NNRAETG---PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 T + + GE L RE +L +L+ + G+ ++ Q+ +++G Sbjct: 161 LTPEATFTLGEFTLDASAHSIVRAGEELALTAREFDLLAFLLKHPGQAFSREQLLKSVWG 220 Query: 180 LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 E + + V + +LR+K+ + + + +GY +++ Sbjct: 221 W--EFGDLSTVTVTVRRLREKIETDPTHPTILATVWGVGYRLNF 262 >gi|149371968|ref|ZP_01891287.1| two-component response regulator [unidentified eubacterium SCB49] gi|149355108|gb|EDM43669.1| two-component response regulator [unidentified eubacterium SCB49] Length = 239 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 43/223 (19%), Positives = 91/223 (40%), Gaps = 9/223 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 +L+DD + + ++G + + + + ++ + G + Sbjct: 20 ILLVDDEPDILEIVGYNLSNEGYQVITAENGREGVEKAKKEKPHLIILDVMMPEMDGIEA 79 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117 E R I S+ + ++ + + FD+G DD + KPI + +L++V ++ Sbjct: 80 CEKIRSIPELSETVITFLTARGEDYSQVAGFDAGADDYITKPIKPKILLSKVKALLRRFK 139 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + G I + + V LPR+E +L L + GK + +I + Sbjct: 140 SPSKVDTVVKIGNIIINREEYQVTVGKTELVLPRKEFELLSLLASKPGKVFKREEILDTV 199 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G + V ++ HI KLR+K+ + D + + +GY I Sbjct: 200 WGN-EVVVGGRTIDVHIRKLREKIGD----DRFKTVKGVGYKI 237 >gi|90418941|ref|ZP_01226852.1| two-component phosphate transcriptional regulator, PhoB [Aurantimonas manganoxydans SI85-9A1] gi|90337021|gb|EAS50726.1| two-component phosphate transcriptional regulator, PhoB [Aurantimonas manganoxydans SI85-9A1] Length = 247 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 49/226 (21%), Positives = 97/226 (42%), Gaps = 8/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 V+++D + +G ++ + + + D+ ++ L G + Sbjct: 5 IVVVEDEEALGILLRYNLEAEGYVVDVIDRGDEADIRLKEEVPDLLILDWML--PGLSGV 62 Query: 62 ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 EL R +R + P++ ++ + G DD V KP E++ARV A+ RR Sbjct: 63 ELCRRLRQREETERLPILMLTARGEESERVRGLSVGADDYVVKPFSTPELIARVRAMLRR 122 Query: 119 LKVSNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 K ++ G I + + G L E +++E+ M + G+ ++ Q+ Sbjct: 123 SKPEKISSQLVAGDIDLDRETHRVRRAGRELKLGPTEFKLMEFFMQSPGRVFSREQLLDG 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 ++G D V+E V+ H+ +LRK + DP+ + R GY++D Sbjct: 183 VWGR-DIYVDERTVDVHVGRLRKAINRGRERDPIRTVRGAGYALDE 227 >gi|332686791|ref|YP_004456565.1| two-component response regulator [Melissococcus plutonius ATCC 35311] gi|332370800|dbj|BAK21756.1| two-component response regulator [Melissococcus plutonius ATCC 35311] Length = 229 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 48/226 (21%), Positives = 91/226 (40%), Gaps = 11/226 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + +G + E + D+ ++ L LE Sbjct: 1 MVVDDEKPISEIVKYNLVKEGYEVYTAFDGEEALEKVTEVEPDLVLLDLML--PKMDGLE 58 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR +P+I ++ S + + G DD V KP +RE++ARV A RR S Sbjct: 59 VAREIRKTYNMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRREASS 118 Query: 123 NNRAETGPI-------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + D GE L RE +L YL + G+ + + + Sbjct: 119 VKEEAGNQSELTIGDLTIHPDAYMVSKAGENIELTHREFELLYYLARHLGQVMTREHLLQ 178 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++G +D + V+ + +LR+K+ + + ++R +GY + Sbjct: 179 TVWG-YDYFGDVRTVDVTVRRLREKIEDSPSHPGYLVTRRGVGYYL 223 >gi|239944236|ref|ZP_04696173.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239990692|ref|ZP_04711356.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] gi|291447708|ref|ZP_06587098.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291350655|gb|EFE77559.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 245 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 48/227 (21%), Positives = 95/227 (41%), Gaps = 15/227 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D A + D A +G ++ + + D+ ++ L G LE Sbjct: 22 LVVEDDATIVDAISARLRAEGFLVQTALDGPAAVDAAEAWQPDLMVLDIML--PGFDGLE 79 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R ++A VP++ ++ L G DD + KP RE+ ARV + RR++ + Sbjct: 80 VCRRVQAARPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRVERA 139 Query: 123 NNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 A T + R V+ E L E +L L +++ Q+ Sbjct: 140 ALAAVTPRSGILRLGELEIDHAQRRVRVRAEDVHLTPTEFDLLVCLANTPRAVLSREQLL 199 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + ++ D + V+SHI LR+K+ G + + + +GY+++ Sbjct: 200 AEVWDWADASG-TRTVDSHIKALRRKI----GAERIRTVHGVGYALE 241 >gi|225174252|ref|ZP_03728251.1| two component transcriptional regulator, winged helix family [Dethiobacter alkaliphilus AHT 1] gi|225170037|gb|EEG78832.1| two component transcriptional regulator, winged helix family [Dethiobacter alkaliphilus AHT 1] Length = 230 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 44/227 (19%), Positives = 93/227 (40%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D + A +G ++E + L S + ++ L GE V Sbjct: 4 ILVVEDEEKISRVIRAYLEKEGFAVEEASDGLQALELVSDFNFSLIILDLMLPHMSGEDV 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R + +P+I ++ + + + G DD + KP E++ARV A+ RR + Sbjct: 64 CKQLRR--QGNNIPIIMLTAKGAEEERIRGLGLGADDYIVKPFSPGELVARVHAVLRRYR 121 Query: 121 VSN------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 +N G + + + R ++G++ L E ++L + + G+ + ++ Sbjct: 122 SNNGVLAEVMEFADGDLVIDTLRRQATLRGQLVDLTATEFKLLAAMAKSPGRVFTRGELL 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 G + ++SHI LR+KL K + + +GY Sbjct: 182 EIAQGALPTGFD-RTIDSHIKNLRQKLEPKPDEPQLIRTVYGVGYKF 227 >gi|229917896|ref|YP_002886542.1| two component transcriptional regulator, winged helix family [Exiguobacterium sp. AT1b] gi|229469325|gb|ACQ71097.1| two component transcriptional regulator, winged helix family [Exiguobacterium sp. AT1b] Length = 230 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 44/228 (19%), Positives = 91/228 (39%), Gaps = 11/228 (4%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + + DD +++ ++G +L + + L S+ D+ ++ Sbjct: 6 VICIADDDEAIRELLAIYLKNEGYALRFAKNGQEVLDLASTETIDLLILDLM--MPVMGG 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E IR +P++ ++ S + G DD + KP + E+ RV ++ RR + Sbjct: 64 IEACIEIRKTQFMPILMLTAKTSDLDLMQGISVGADDYIKKPFNPLEVTLRVKSLLRRYR 123 Query: 121 VSNNRA-------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + + R + L +E IL Y M + + + QI Sbjct: 124 DYGSDRADLTSTLVFENVTLDLQTRQCRKDEMLIRLTPKEFDILAYFMRHPNQVLTVEQI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + A++G V+ N V HI+K+R+KL + + + +GY + Sbjct: 184 YEAVWGEAAFEVD-NTVMVHITKIREKLEDTPRKPTIIKTVWGVGYRL 230 >gi|298247348|ref|ZP_06971153.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297550007|gb|EFH83873.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 230 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 47/221 (21%), Positives = 97/221 (43%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + + ++ S++ + + L A D+ ++ L + L Sbjct: 3 ILVIEDNYRLSESLKTNLVNERYSVDAAYDGQEGQDLAELAPYDLIILDILL--PKKDGL 60 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-HHREILARVAAIYRRL 119 E+ R +R Q P++ ++ S+ + D G DD + KP + + A + R+ Sbjct: 61 EVCRELRRRRVQTPILLLTARDSIDDRVRGLDCGADDYLVKPFAMNELLARLRALLRRQQ 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + R E G + + E +G+ L RE +LEY M + G+ V + I I+ Sbjct: 121 PYKSARLEIGSLVIDPATHTVEREGQAIELTPREYALLEYFMYHPGQVVTRDMIEQHIW- 179 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D NV++ ++ +LR+K+ + + R +GY + Sbjct: 180 NYDFECSSNVIDVYVRRLRRKIDAPFTTKLLATIRGVGYCL 220 >gi|228989676|ref|ZP_04149658.1| Two component transcriptional regulator, winged helix [Bacillus pseudomycoides DSM 12442] gi|228770010|gb|EEM18592.1| Two component transcriptional regulator, winged helix [Bacillus pseudomycoides DSM 12442] Length = 237 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 43/229 (18%), Positives = 89/229 (38%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 V+I+D +++ +G + + + + D+ ++ + Sbjct: 5 IVIIEDEDNIREICKRYLEREGYEVYTAVNGTEGWNVFQQYQPDLIILDLM--MPKKDGW 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI------ 115 EL IR +S VP+I ++ + + G DD V KP RE++ RV I Sbjct: 63 ELCEEIRQYSNVPIIMLTARGEERDRILGLTMGADDYVTKPFSPRELVLRVQIILRRGNQ 122 Query: 116 --YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + + E +++ R V G L +E +L + + + +++Q+ Sbjct: 123 ATIQEKEPVSEMIEFLDLKIDPTKRRVFVCGHEIELTVKEFEVLYIMAKHPKQVFSRSQL 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221 I+ F+ N V +S+LR+KL + + +GY + Sbjct: 183 LEQIW-NFEYEGCTNAVTVLMSRLREKLEKHTTKNRWIHTVWGIGYRFE 230 >gi|297562675|ref|YP_003681649.1| two component transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296847123|gb|ADH69143.1| two component transcriptional regulator, winged helix family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 225 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 45/219 (20%), Positives = 89/219 (40%), Gaps = 5/219 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + + +G + + + D+ ++ L G ++ Sbjct: 6 LVVDDDLALAEMLGIVLRGEGFEPSFVHDGDKALEAFRETKPDLVLLDLML--PGADGID 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IRA S VP++ ++ + +SG DD + KP +E++ARV RR + Sbjct: 64 VCRQIRAESGVPIVMLTAKSDTIDIVLGLESGADDYIVKPFKPKELVARVRVRLRRTEEP 123 Query: 123 NNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + G I + G GE L E +L L + + + ++G + Sbjct: 124 APEVLQIGDITIDVAGHAVRRDGEQISLTPLEFDLLVALARKPRQVFTREVLLEQVWG-Y 182 Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219 A + +V H+ +LR K+ + V + R +GY Sbjct: 183 RHAADTRLVNVHVQRLRAKIEKDPEHPEVVVTVRGVGYK 221 >gi|254518210|ref|ZP_05130266.1| DNA-binding response regulator [Clostridium sp. 7_2_43FAA] gi|226911959|gb|EEH97160.1| DNA-binding response regulator [Clostridium sp. 7_2_43FAA] Length = 230 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 46/229 (20%), Positives = 90/229 (39%), Gaps = 11/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD ++D ++G ++ ++ E + + ++ G L Sbjct: 5 ILVIDDEKEIRDLLEINLKNEGYNVFKASNGEKALEILDKEEIHLMVLDIM--MPGMDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAA 114 E+ R +R +P++ +S + +G DD V KP +H E+ R Sbjct: 63 EVCRRVREKYNIPILMLSAKTEDMDKIQGIMTGADDYVCKPFNHLELTVRIRALLRRAYF 122 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + +++ +N + + + L RE IL L +NRG+ + +IF Sbjct: 123 LNTKMQALDNIIRIESMIIDKSKHKVTIDDNEVSLTAREFEILYLLASNRGRVFSTEEIF 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222 ++ N V H+S+LR KL G + + +GY I+ Sbjct: 183 EKVWKER-YYQSNNTVMVHMSRLRDKLEQYMEGNKIIHTVWGVGYKIEK 230 >gi|210617586|ref|ZP_03291642.1| hypothetical protein CLONEX_03866 [Clostridium nexile DSM 1787] gi|210149251|gb|EEA80260.1| hypothetical protein CLONEX_03866 [Clostridium nexile DSM 1787] Length = 226 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 42/229 (18%), Positives = 92/229 (40%), Gaps = 11/229 (4%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 M ++D +++ + G+ GF + + ++ ++ L GE Sbjct: 1 MIYCVEDDGNIRELVVYTLNTTGMEARGFEDGKSFMEALAFETPELILLDIML--PGEDG 58 Query: 61 LELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAI 115 L L + ++ ++P+I ++ + + D G DD V KP E+ + Sbjct: 59 LSLLKKLKNSAKTKEIPVIMVTAKGAEYDKVVGLDGGADDYVTKPFGMMELVSRIKAVLR 118 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + + G + + V G+ L +E +L L+ N + + ++ Sbjct: 119 RTKKEKEEGQYSVGNLSMDLKKHVVFVDGKQVTLTLKEFELLGRLVQNHNIVLTRDRLLE 178 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI-DWN 223 ++G +D E V+ H+ LR+KL + D + + R +GY + + N Sbjct: 179 EVWG-YDFDGETRTVDVHVRTLRQKLGSAG--DMIQTVRGVGYRLGEIN 224 >gi|17228689|ref|NP_485237.1| two-component response regulator [Nostoc sp. PCC 7120] gi|17130541|dbj|BAB73151.1| two-component response regulator [Nostoc sp. PCC 7120] Length = 228 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 49/221 (22%), Positives = 95/221 (42%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + +G + + L + D++ ++ L G L Sbjct: 5 ILLVEDEVKLARFVELELSSEGYKVSVAHDGITGLTLARESTPDLAVLDWML--PGLSGL 62 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119 E+ R +RA +P+I ++ + + D+G DD V KP E+LAR+ A R Sbjct: 63 EICRRLRATGNSIPVILLTARDEVSDRVAGLDAGADDYVVKPFSIEELLARIRAHLRRTQ 122 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + + + + R+ L +E +LEYL++ + + QI ++G Sbjct: 123 ETDEDLLQFEDLSLNRRTREVFRGNRAVELTAKEFDLLEYLLSYPRQVFTRDQILEKVWG 182 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D + N++E +I LR KL V + R +GY++ Sbjct: 183 -YDFMGDSNIIEVYIRYLRLKLEENNEKRLVHTVRGVGYAL 222 >gi|238795585|ref|ZP_04639100.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia mollaretii ATCC 43969] gi|238720704|gb|EEQ12505.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia mollaretii ATCC 43969] Length = 239 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 38/224 (16%), Positives = 91/224 (40%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A +++ + +G + S D+ ++ L G + Sbjct: 15 ILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRLSEPYPDLVLLDWML--PGGSGI 72 Query: 62 ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 + + ++ +P++ ++ + + + G DD + KP +E++AR+ A+ RR Sbjct: 73 QFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRR 132 Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + E + + + + E ++L + M + + ++ Q+ + Sbjct: 133 ISPMAVEEVIEMQGLSLDPSSHRVMANEQALEMGPTEFKLLHFFMTHPERVYSREQLLNY 192 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + VE+ V+ HI +LRK L V + R GY Sbjct: 193 VWGT-NVYVEDRTVDVHIRRLRKALEVDGHDRMVQTVRGTGYRF 235 >gi|329935953|ref|ZP_08285754.1| two-component system response regulator [Streptomyces griseoaurantiacus M045] gi|329304560|gb|EGG48437.1| two-component system response regulator [Streptomyces griseoaurantiacus M045] Length = 225 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 43/219 (19%), Positives = 89/219 (40%), Gaps = 5/219 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + + +G + + D+ ++ L G +E Sbjct: 6 LVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFRETKPDLVLLDLML--PGRDGIE 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R+IRA S VP++ ++ + +SG DD + KP +E++AR+ A RR + Sbjct: 64 VCRLIRAESGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEEP 123 Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + G + +G+ L E +L L + + + ++G + Sbjct: 124 APEQLAIGDLVIDVAGHSVKREGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWG-Y 182 Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219 A + +V H+ +LR K+ + V + R +GY Sbjct: 183 RHAADTRLVNVHVQRLRSKVEKDPEKPEIVVTVRGVGYK 221 >gi|300947806|ref|ZP_07161962.1| response regulator receiver domain protein [Escherichia coli MS 116-1] gi|300452626|gb|EFK16246.1| response regulator receiver domain protein [Escherichia coli MS 116-1] Length = 240 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 44/224 (19%), Positives = 89/224 (39%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + I + + + D+ ++ L G L Sbjct: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLML--PGTDGL 70 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 L R IR S +P++ ++ L + G DD + KP RE++ARV + Sbjct: 71 TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + P+ + +G++ L E R+L+ L GK ++ Q+ + +Y Sbjct: 131 QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190 Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + V + ++SHI LR+KL + + + +GY + Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 >gi|297160788|gb|ADI10500.1| putative two-component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 228 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 44/222 (19%), Positives = 91/222 (40%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G +++ + + D+ ++ L G Sbjct: 3 LLIVEDEKRLATALARGLAAEGFAVDVAHDGVSGLHMAQEQDYDLIVLDIML--PGLNGY 60 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + +RA P++ ++ + D+G DD + KP + + AR+ A+ RR Sbjct: 61 RVCAQLRAVGDETPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLQARIRALLRRRT 120 Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + V R E G L +E +LE L + G+ V+K + + ++ Sbjct: 121 RAGVQVLKIGDLTVDPGARRVERAGAEVTLTAKEFAVLEQLALHAGRVVSKADVLAHVWD 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 F + N+VE ++S LR+KL G + + R GY ++ Sbjct: 181 -FAYDGDPNIVEVYVSALRRKLDLPFGRRSITTVRGAGYRLE 221 >gi|154686839|ref|YP_001422000.1| YrkP [Bacillus amyloliquefaciens FZB42] gi|154352690|gb|ABS74769.1| YrkP [Bacillus amyloliquefaciens FZB42] Length = 231 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 47/227 (20%), Positives = 88/227 (38%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + D G + + L + + + + ++ G + Sbjct: 5 ILVVEDDRDIGDLLEESLTRSGYEVLTAKDGKRALQLVNDS---LDLVILDIMMPGISGI 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E + IR S VP++ ++ S + +G DD + KP E+ ARV A RR + Sbjct: 62 ETCQHIRKTSNVPILFLTARSSTLDKTEGLLAGGDDYMTKPFSEEELHARVIAQLRRYTI 121 Query: 122 SNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + E V + + + + L E RIL+ LM+ R K + I+ Sbjct: 122 YQEKKEQEETFLIGGNLRVSEEFNEVYKEEQQIKLSDLEYRILKLLMSKRNKIFSAQNIY 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 +++G N V HI KLR K+ + + ++ GY Sbjct: 182 ESVWGQPYFYCSNNTVMVHIRKLRSKIEDDPARPVYIKTEWGRGYRF 228 >gi|3282774|gb|AAC25063.1| response regulator homolog PhoB [Vibrio cholerae] Length = 229 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 35/222 (15%), Positives = 93/222 (41%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D A +++ + G + + D+ ++ L G G + Sbjct: 5 ILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSAMSKLAEPFPDLVLLDWMLPGGSGINL 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ + +P++ ++ + + + G DD + KP +E++AR+ A+ RR+ Sbjct: 65 IKHMKREEMTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIRRVT 124 Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + + +++ + + E ++L + M ++ + ++ Q+ + ++ Sbjct: 125 PTALEDVIDVQGLKLDPVSHRVTANDQPLDMGPTEFKMLHFFMTHQERVYSREQLLNNVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G + VE+ V+ HI LR L + + + R GY Sbjct: 185 GT-NVYVEDRTVDVHIRPLRNALEDAGHDKLIQTVRGAGYRF 225 >gi|239930897|ref|ZP_04687850.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 225 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 43/219 (19%), Positives = 89/219 (40%), Gaps = 5/219 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + + + +G + + D+ ++ L G +E Sbjct: 6 LVVDDDSALAEMLGIVLRGEGFEPSFVADGDKALAAFRETKPDLVLLDLML--PGRDGIE 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R+IRA S VP++ ++ + +SG DD + KP +E++AR+ A RR + Sbjct: 64 VCRLIRAESGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEEP 123 Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + G + G+ L E +L L + + + ++G + Sbjct: 124 APEQLAIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWG-Y 182 Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219 A + +V H+ +LR K+ + V + R +GY Sbjct: 183 RHAADTRLVNVHVQRLRSKVEKDPEKPEIVVTVRGVGYK 221 >gi|260574724|ref|ZP_05842727.1| two component transcriptional regulator PhoB, winged helix family [Rhodobacter sp. SW2] gi|259023141|gb|EEW26434.1| two component transcriptional regulator PhoB, winged helix family [Rhodobacter sp. SW2] Length = 230 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 54/223 (24%), Positives = 94/223 (42%), Gaps = 8/223 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L++D A ++ +G + E L D+ ++ LE Sbjct: 10 LLVEDEAAQREVLAYNLAAEGYRVVQAGDGEEALDLIGDELPDLIVLDWM--MPKVSGLE 67 Query: 63 LPRII---RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 + R + VP++ +S + ++G DD V KP E++ARV A RR Sbjct: 68 VCRRLKTRPETRAVPILMLSARSEEVDRVRGLETGADDYVIKPYSVAELMARVRANLRRA 127 Query: 120 KVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + ++ E G IR+ + +V L E R+L M G+ ++ Q+ I Sbjct: 128 RPASVGVVLEHGDIRLDGETHRVYRADKVLKLGPIEFRLLATFMERPGRVFSREQLLDRI 187 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G D VE V+ H+ +LR+ L G DP+ + R GY++ Sbjct: 188 WGR-DINVETRTVDVHVGRLRRALCVFGGDDPLRTVRGAGYAL 229 >gi|226305655|ref|YP_002765615.1| two-component response regulator MtrA [Rhodococcus erythropolis PR4] gi|229489658|ref|ZP_04383521.1| response regulator, two-component system [Rhodococcus erythropolis SK121] gi|226184772|dbj|BAH32876.1| two-component response regulator MtrA [Rhodococcus erythropolis PR4] gi|229323755|gb|EEN89513.1| response regulator, two-component system [Rhodococcus erythropolis SK121] Length = 225 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 43/220 (19%), Positives = 86/220 (39%), Gaps = 5/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + +G R D+ ++ L G + Sbjct: 5 ILVVDDDTALAEMLTIVLRGEGFDPYVVGDGTLALAAVRETRPDLVLLDLML--PGMNGI 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R++RA S VP++ ++ + +SG DD + KP +E++ARV A RR + Sbjct: 63 DVCRVLRADSGVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRRTEE 122 Query: 122 SNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 I + E L E +L L + + + ++G Sbjct: 123 EPAELLSIADIVIDVPAHKVSRGSEQISLTPLEFDLLVALARKPRQVFTREVLLEQVWG- 181 Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219 + A + +V H+ +LR K+ + + V + R +GY Sbjct: 182 YRHAADTRLVNVHVQRLRAKVETDPENPEVVLTVRGVGYK 221 >gi|226314437|ref|YP_002774333.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226097387|dbj|BAH45829.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 228 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 41/222 (18%), Positives = 89/222 (40%), Gaps = 6/222 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + +G +G + + R D+ ++ L E Sbjct: 4 LVVEDDKTIAEGLHYSLSSEGYEVVLCEGKQTALEAIKQQRFDLYLLDLTL--PDGNGYE 61 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRRL 119 + ++ + P+I ++ + D G DD + KP RE + Y++ Sbjct: 62 ICEYVKENQDAPVIFLTACDDEINVVRGLDMGADDYITKPFRIRELISRMKSSLRHYQKE 121 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +++ G + V + E L E R+L + NRG+ +++ Q+ I+ Sbjct: 122 PNLSDKVRVGNVVVNTKLAKVYKGTEEVMLTALEYRLLLAFINNRGQVLSRNQLLEGIWD 181 Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 L + +N + +I +LR+KL + +++ R LGY + Sbjct: 182 LDGNFINDNTLSVYIKRLREKLEDDSQNPKVIETVRGLGYRM 223 >gi|62180703|ref|YP_217120.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|224583379|ref|YP_002637177.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|62128336|gb|AAX66039.1| response regulator in two-component regulatory system with BaeS (OmpR family) [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|224467906|gb|ACN45736.1| putative two-component system response regulator [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|322715177|gb|EFZ06748.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 240 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 42/224 (18%), Positives = 84/224 (37%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + I + N + D+ ++ L G L Sbjct: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLINHGDKLLPYVRQTPPDLILLDLML--PGTDGL 70 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118 L R IR S +P++ ++ L + G DD + KP RE + + + Sbjct: 71 TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + P+ + G+ L E R+L+ L GK ++ Q+ + +Y Sbjct: 131 QRELQQQDAESPLMIDESRFQASWCGKALDLTPAEFRLLKTLSLEPGKVFSREQLLNHLY 190 Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + V + ++SHI LR+KL + + + +GY + Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 >gi|332637971|ref|ZP_08416834.1| response regulator [Weissella cibaria KACC 11862] Length = 233 Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 47/228 (20%), Positives = 91/228 (39%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + L S D+ ++ L + Sbjct: 4 ILVVDDEKPISDIIKFNLTKEGYDVVVAMDGREALDLFESEDPDLVLLDQML--PELEGT 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR SQ P+I ++ S + + G DD V KP +RE+LAR+ A RR Sbjct: 62 EVLRQIRTKSQTPVIMVTAKDSEIDKVLGLEMGADDYVTKPFSNRELLARIKANLRRQTP 121 Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + D G+ L RE +L +L + G+ + + + Sbjct: 122 VVGQNVMDDSGDIKIGALTIHPDAYMVSKNGQDIELTHREFELLHHLAKHIGQVMTRDDL 181 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++G +D + V+ + ++R+K+ + ++R +GY + Sbjct: 182 LQTVWG-YDYFGDVRTVDVTVRRIREKIEETPSHPQILMTRRGVGYYL 228 >gi|313606840|gb|EFR83490.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Listeria monocytogenes FSL F2-208] gi|332312931|gb|EGJ26026.1| Response regulator [Listeria monocytogenes str. Scott A] Length = 246 Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 47/233 (20%), Positives = 95/233 (40%), Gaps = 16/233 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A + G + L S + D+ ++ L + Sbjct: 14 ILVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLML--PEMDGI 71 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ + +R VP++ ++ + + G DD + KP RE++AR+ AI RR + Sbjct: 72 EVTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTE 131 Query: 121 VSNNRAETGPIR-----------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 E + D + +Q ++ L +E +L +L +RGK + Sbjct: 132 GKAEIIEEITEDSEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFS 191 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 + Q+ ++ +D E +V+ H+S LR K+ + + + R GY ++ Sbjct: 192 RDQLLDTVW-NYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKME 243 >gi|269216464|ref|ZP_06160318.1| DNA-binding response regulator SrrA [Slackia exigua ATCC 700122] gi|269129993|gb|EEZ61075.1| DNA-binding response regulator SrrA [Slackia exigua ATCC 700122] Length = 239 Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 42/225 (18%), Positives = 90/225 (40%), Gaps = 8/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D ++D A + + + D+ ++ L Sbjct: 9 ILLVEDEKAIRDAVAAYLERENYWVTAVGDGQDALDEFGKHHFDLVVLDLML--PRVPGE 66 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYR 117 + R+IR +S VP+I ++ ++ + + G DD + KP RE++ARV ++ Sbjct: 67 RVCRVIRDNSDVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARVRALLRRVHA 126 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + E G + + G V + L E ++L L G+ ++ ++ + Sbjct: 127 DSEPQREVLEFGELTIDVSGHKVLVNDKEVDLTASEFKLLTTLSRYPGRVYSRMELVEKV 186 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 G +D E ++SH+ LR K+ + + + +GY + Sbjct: 187 LG-YDFEGYERTIDSHVKNLRAKIGDNPRNPKWLHTVHGVGYRFE 230 >gi|258514654|ref|YP_003190876.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] gi|257778359|gb|ACV62253.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] Length = 225 Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 42/222 (18%), Positives = 83/222 (37%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD + +G ++E N + L + D+ ++ G Sbjct: 5 ILVIDDDPRITALLKRTLLFNGYTVEAANDGKAGITLLENNHFDLVILDVM--MPGLDGW 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118 ++ IR + +P++ ++ ++ + D G DD + KP E + + + Sbjct: 63 QVCGQIREYYDLPVLMLTARDEVEDRVKGLDLGADDYLVKPFAMTELLARIRALLRRSGK 122 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + + + R+ RE +L+ M N + K I I+ Sbjct: 123 TEAQPAILSYADLSMDTGTREVFRNKRQLNPTAREYELLKLFMENPRLVLNKELIMERIW 182 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G +D E NV+E +I LR KL + + R GY + Sbjct: 183 G-YDYQGESNVLEVYIVMLRNKLEACGEKRLIHTVRGAGYVL 223 >gi|228920611|ref|ZP_04083956.1| Two-component response regulator vanR [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228839241|gb|EEM84537.1| Two-component response regulator vanR [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 242 Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 40/229 (17%), Positives = 83/229 (36%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +G + ++ E + ++ R ++ ++ + Sbjct: 16 ILIVDDDQDIVRFVNVNLMQEGFKVFSAHNGEEALEIINNNRIQLAILDIM--MPQMDGI 73 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARVA 113 EL R IR +P++ +S S + F +G DD + KP E Sbjct: 74 ELCRRIREKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 133 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + + + R + GE L R E IL + A + + +I Sbjct: 134 FNQNAAQEIEKKINIRGLEIDEVSRTVMLYGETINLTRTEYDILYLMAAVKNRVFTIEEI 193 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + +++ N V HI++LR K+ + + +GY I+ Sbjct: 194 YESVWKERAYE-SNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIE 241 >gi|169628171|ref|YP_001701820.1| two component response transcriptional regulatory protein MprA [Mycobacterium abscessus ATCC 19977] gi|169240138|emb|CAM61166.1| Mycobacterial persistence regulator MrpA (two component response transcriptional regulatory protein) [Mycobacterium abscessus] Length = 230 Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 49/224 (21%), Positives = 98/224 (43%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V++ +G S++ + ++ R D ++ L Sbjct: 5 ILVVDDDRAVRESLRRSLSFNGYSVDLAEDGVDALNVIANDRPDALVLDVM--MPKLDGL 62 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +R+ P++ ++ S+ + D+G DD + KP E+LAR+ A+ RR Sbjct: 63 EVCRRLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRRTT 122 Query: 121 VSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + G + + R+ L R E +LE LMAN + + +++I Sbjct: 123 IDESADAATLSFGDLTLDPVTREVHRGTRSISLTRTEFALLEMLMANPRRVLTRSRILEE 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G FD N +E ++ LR+K + + + R +GY + Sbjct: 183 VWG-FDFPTSGNALEVYVGYLRRKTEAEGELRLIHTVRGVGYVL 225 >gi|182416578|ref|ZP_02947999.1| transcriptional regulatory protein ResD [Clostridium butyricum 5521] gi|237667380|ref|ZP_04527364.1| transcriptional regulatory protein ResD [Clostridium butyricum E4 str. BoNT E BL5262] gi|182379575|gb|EDT77058.1| transcriptional regulatory protein ResD [Clostridium butyricum 5521] gi|237655728|gb|EEP53284.1| transcriptional regulatory protein ResD [Clostridium butyricum E4 str. BoNT E BL5262] Length = 232 Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 37/230 (16%), Positives = 86/230 (37%), Gaps = 14/230 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + +G E + + D+ ++ L G+ Sbjct: 4 ILIVEDDKSIAELEQDYLEINGFKAEIALTGVSGLEKAINKEYDLILLDVML--PGKDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH----------HREILAR 111 E+ + IR ++P++ ++ + G DD + KP H R Sbjct: 62 EICQEIRKVKEIPILLVTAKKDDIYIIRGLGIGADDYIVKPFSPSELVARVTAHMNRYER 121 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + ++ + S N G + + D R + L +E +L +L +N +K Sbjct: 122 LTSMDKEHGKSQNIISIGRLSINCDSRRVYIGDTEIKLANKEFELLVFLASNPNIVFSKD 181 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + I+G + + + V HI+++R+K+ + +++ GY Sbjct: 182 TLLDRIWGE-ESFGDTSTVTVHINRIREKIEIDTSNPQYIETVWGAGYRF 230 >gi|296134173|ref|YP_003641420.1| two component transcriptional regulator, winged helix family [Thermincola sp. JR] gi|296032751|gb|ADG83519.1| two component transcriptional regulator, winged helix family [Thermincola potens JR] Length = 228 Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 43/222 (19%), Positives = 91/222 (40%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + +G +E N + + D+ ++ L + Sbjct: 6 ILIIEDEVKIARFLELELKYEGYMVEQENDGRSGLERATGGKFDLIILDVML--PSLNGM 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118 E+ R +R S+ P+I ++ + + D G DD + KP E + V + Sbjct: 64 EVLRRLRQVSETPVIMLTAKDEVTDKVMGLDIGADDYMTKPFAIEELLARIRAVLKRRKP 123 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + G +++ + E L ++E +L YL+ N+ + + +I ++ Sbjct: 124 ANHKRDIITAGDLKINLEQHSVCFNKEPVDLTKKEYDLLCYLVQNKNMVLTRDKILETVW 183 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G +D + NVV+ +I LR K+ ++ + + R +GY I Sbjct: 184 G-YDYYGDTNVVDVYIRYLRSKIDDRFNTKLIHTVRGVGYII 224 >gi|251790686|ref|YP_003005407.1| two component transcriptional regulator PhoB, winged helix family [Dickeya zeae Ech1591] gi|307129884|ref|YP_003881900.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Dickeya dadantii 3937] gi|247539307|gb|ACT07928.1| two component transcriptional regulator PhoB, winged helix family [Dickeya zeae Ech1591] gi|306527413|gb|ADM97343.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Dickeya dadantii 3937] Length = 229 Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 37/224 (16%), Positives = 91/224 (40%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A +++ + +G + + ++ ++ L G L Sbjct: 5 ILVVEDEAPIREMVCFVLEQNGYQPVEAEDYDSAVTRLAEPYPELVLLDWML--PGGSGL 62 Query: 62 ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 + + ++ +P++ ++ + + + G DD + KP +E++AR+ A+ RR Sbjct: 63 QFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRR 122 Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + E + + + + E ++L + M + + ++ Q+ + Sbjct: 123 ISPMAVEEVIEMRGLSLDPSSHRVTTEEHALDMGPTEFKLLHFFMTHPERVYSREQLLNH 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + VE+ V+ HI +LRK L V + R GY Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALETSGHDKMVQTVRGTGYRF 225 >gi|282601102|ref|ZP_05980740.2| DNA-binding response regulator ResD [Subdoligranulum variabile DSM 15176] gi|282570663|gb|EFB76198.1| DNA-binding response regulator ResD [Subdoligranulum variabile DSM 15176] Length = 271 Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 45/225 (20%), Positives = 94/225 (41%), Gaps = 10/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++D G + E + + D+ ++ + Sbjct: 48 ILVVDDEPRIRDLIREHLQYAGFTCEEAGDGAAALSILTQGGIDLVILDIM--MPFMDGM 105 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 R +R + P+I ++ L + G DD V KP RE++ARV A+ R Sbjct: 106 TCLREMRTRKIMTPVIMLTARSEEYDKLAGLEGGADDYVVKPFSPRELVARVKAVLARTM 165 Query: 121 VSNNRAETGPIR----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 +++ + + + +V G+ PL +E +L +L++N+G +++ +I Sbjct: 166 PRTEDSQSSYVFGDLSIDTASHTVKVAGQEAPLTPKEFDLLVFLVSNKGIALSREKILQK 225 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ +D E+ V++HI LR L + + + +GY D Sbjct: 226 VW-NYDYYGEDRTVDTHIKMLRGHLG--PCRNYIVTVWGIGYKFD 267 >gi|169630671|ref|YP_001704320.1| DNA-binding response regulator MtrA [Mycobacterium abscessus ATCC 19977] gi|169242638|emb|CAM63666.1| DNA-binding response regulator MtrA [Mycobacterium abscessus] Length = 225 Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 42/220 (19%), Positives = 87/220 (39%), Gaps = 5/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A + + + +G + R D+ ++ L G + Sbjct: 5 ILVVDDDASLAEMLTIVLRGEGFETAVVSDGTQALTAVRELRPDLVLLDLML--PGMNGI 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R++R+ S VP++ ++ + +SG DD + KP +E++AR+ A RR Sbjct: 63 DVCRVLRSDSGVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARIRARLRRNDD 122 Query: 122 SNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 I + +GE L E +L L + + + ++G Sbjct: 123 EPAELLNIAGIDIDVPAHKVTREGEQISLTPLEFDLLVALARKPRQVFTRDVLLEQVWG- 181 Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219 + + +V H+ +LR K+ + V + R +GY Sbjct: 182 YRHPADTRLVNVHVQRLRAKVEKDPENPTVVLTVRGVGYK 221 >gi|311741763|ref|ZP_07715574.1| response regulator [Aeromicrobium marinum DSM 15272] gi|311314769|gb|EFQ84675.1| response regulator [Aeromicrobium marinum DSM 15272] Length = 226 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 52/224 (23%), Positives = 99/224 (44%), Gaps = 8/224 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + + + +G + + A D+ ++ L G E Sbjct: 5 LVVEDESSYSEALSYVLRKEGFDVAIAETGPDALLEFDRAGADIVLLDLML--PGLSGTE 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +R S VP+I +S + + + G DD V KP RE++AR+ A+ RR Sbjct: 63 VCRQLRQTSSVPIIMVSAKDTEVDKVVGLELGADDYVTKPYSPRELVARIRAVLRRGVAE 122 Query: 123 NNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++ E G +R+ D V G LP +E +LE+ + N G+ + + Q+ ++ Sbjct: 123 DDVEGASLEAGRVRMDVDRHLVTVDGTETRLPLKEFELLEFFLRNPGRVLTRGQLIDRVW 182 Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 G D + ++ H+ +LR K+ + + + R LGY D Sbjct: 183 GA-DYVGDTKTLDVHVKRLRAKIEVDPANPVTLTTVRGLGYKFD 225 >gi|308070884|ref|YP_003872489.1| regulatory protein vanR [Paenibacillus polymyxa E681] gi|305860163|gb|ADM71951.1| Regulatory protein vanR [Paenibacillus polymyxa E681] Length = 226 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 45/226 (19%), Positives = 84/226 (37%), Gaps = 9/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++ D ++D ++G + + L S ++ +++ L + Sbjct: 4 ILVVGDDTEIRDVIHVYLRNEGYFVIEAANGMEALDLIRSISFELVILDSML--PQMDGI 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 IR S P+I +S + G DD + KP + E+LARV A +R + Sbjct: 62 NACIKIREISNTPIILLSAKEEDIDKIVGLTPGADDYMIKPFNPLELLARVKAHLQRQSL 121 Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 I ++ L E ILE L ++ G+ + +I+ + Sbjct: 122 IGKEEFNSLIFFKDLVIDKTKHSVTLKENNISLTPLEFSILELLASHPGQVFSFDKIYES 181 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 ++ +N V HI LR+KL + + +GY ID Sbjct: 182 VWEDP-IGYSDNTVMVHIRNLREKLEKSPRDPQYIKTVWGVGYKID 226 >gi|311744416|ref|ZP_07718217.1| response regulator [Aeromicrobium marinum DSM 15272] gi|311312221|gb|EFQ82137.1| response regulator [Aeromicrobium marinum DSM 15272] Length = 249 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 38/227 (16%), Positives = 86/227 (37%), Gaps = 12/227 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D V+D +G + +A D+ ++ L G L+ Sbjct: 13 LVVEDEPAVRDVVRRYLEAEGYRVTVAADGITGLETARTAEPDLIVLDIML--PGLDGLQ 70 Query: 63 LPRIIRAH--SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAI 115 + +R S VP++ ++ + SG DD V KP +E++ R ++ Sbjct: 71 ICERLRREDGSAVPIVMLTALGETDDRIAGLTSGADDYVVKPFSVKELVLRVESVLRRSV 130 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 G +++ R + L RE +L + + + G+ ++ ++ + Sbjct: 131 IEPALPVAEVVREGDLQLNPVSRVAVRGRQPLSLTSREFDLLMFFLRHPGRVFSRDELLN 190 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 ++G + + V H+ +LR K+ + + + GY D Sbjct: 191 RVWGWD--FGDLSTVTVHVKRLRHKIEDIPADPRRIVTVYGRGYRWD 235 >gi|117928656|ref|YP_873207.1| two component transcriptional regulator [Acidothermus cellulolyticus 11B] gi|117649119|gb|ABK53221.1| two component transcriptional regulator, winged helix family [Acidothermus cellulolyticus 11B] Length = 246 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 49/220 (22%), Positives = 96/220 (43%), Gaps = 6/220 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + D +G + ++ + D+ ++ L E Sbjct: 9 LVVDDEQNITDLVATALRYEGFQVATAHTGVQALQTAAKTHPDLVILDVML--PDIDGFE 66 Query: 63 LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R + P++ ++ + + + G DD V KP E++ARV AI RR + Sbjct: 67 VARRLGREGVPTPVLFLTARDATEDKVRGLTVGGDDYVTKPFSLAELVARVHAILRRTRG 126 Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + N + D + G + L E R+L YL+AN K + + Q+ ++ Sbjct: 127 TTNSRLVFADLELDDDTHEVTRGGRLIELTATEYRLLRYLLANARKVLTRAQLLDHVWD- 185 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D + V+E++IS LRKK+ + G + + R +GY++ Sbjct: 186 YDFGGDSGVLETYISYLRKKI-DAEGPPLIHTVRGVGYTL 224 >gi|294635401|ref|ZP_06713893.1| DNA-binding response regulator BaeS [Edwardsiella tarda ATCC 23685] gi|291091224|gb|EFE23785.1| DNA-binding response regulator BaeS [Edwardsiella tarda ATCC 23685] Length = 243 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 49/221 (22%), Positives = 91/221 (41%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + I + + + D+ ++ L G L Sbjct: 18 ILIVEDEPKLGQLLIDYLLAASYRPHWLSRGDEVLPHLQNHLYDLILLDLML--PGVDGL 75 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R IR S+VP++ ++ L + G DD + KP RE++ARV I RR + Sbjct: 76 TLCREIRRSSEVPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCGL 135 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 P+ + + + L + E R+L+ L G +++ Q+ + +Y + Sbjct: 136 QEGGEVRTPLLIDERHFQARYRQQTLDLTQAEFRLLKTLATQPGCVLSREQLLNHLYDDY 195 Query: 182 DEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 V + V+SHI LR+KL + G + S +GY + Sbjct: 196 -RVVTDRTVDSHIKNLRRKLEAIEQGEPLIRSVYGVGYRWE 235 >gi|182416794|ref|ZP_02948188.1| transcriptional regulatory protein ResD [Clostridium butyricum 5521] gi|237667398|ref|ZP_04527382.1| transcriptional regulatory protein ResD [Clostridium butyricum E4 str. BoNT E BL5262] gi|182379374|gb|EDT76871.1| transcriptional regulatory protein ResD [Clostridium butyricum 5521] gi|237655746|gb|EEP53302.1| transcriptional regulatory protein ResD [Clostridium butyricum E4 str. BoNT E BL5262] Length = 224 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 43/222 (19%), Positives = 99/222 (44%), Gaps = 7/222 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++ D ++ ++ E ++ S+ + D+ ++ + Sbjct: 5 ILIVEDELRIRFLLRDYLTKDDFNVFEASNGEEGLFVFSTQKIDLVILDIM--MPVMDGM 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119 + +R S VP+I ++ L +D G DD + KP + ++A+V A R Sbjct: 63 TMLEKLREVSTVPVILLTAKSEEDDKLQGYDYGADDYITKPFSPKVLIAKVKALLKRSRE 122 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + ++ E + + + V G+ L +E +L YL+ N G +++ I ++G Sbjct: 123 DIDSSSQEFNGLTINKLSHEVRVNGKEITLSPKEYELLIYLVTNEGIALSRDNILDNVWG 182 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 L D + V++++ +LR+KL ++ + + R GY + Sbjct: 183 L-DYYGDIRTVDTNVKRLREKLLDRSN--LIVTVRGSGYKFE 221 >gi|16765461|ref|NP_461076.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56412969|ref|YP_150044.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|161613184|ref|YP_001587149.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167991049|ref|ZP_02572148.1| response regulator [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168229457|ref|ZP_02654515.1| response regulator [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168236293|ref|ZP_02661351.1| response regulator [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168242208|ref|ZP_02667140.1| response regulator [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194451571|ref|YP_002046183.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194472565|ref|ZP_03078549.1| response regulator [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194737843|ref|YP_002115222.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197250857|ref|YP_002147092.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197264591|ref|ZP_03164665.1| response regulator [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197361899|ref|YP_002141535.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198242249|ref|YP_002216218.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200389136|ref|ZP_03215748.1| response regulator [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204929186|ref|ZP_03220329.1| response regulator [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205353273|ref|YP_002227074.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207857567|ref|YP_002244218.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|238912561|ref|ZP_04656398.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|16420665|gb|AAL21035.1| response regulator in two-component regulatory system with BaeS [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56127226|gb|AAV76732.1| putative two-component system response regulator [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|161362548|gb|ABX66316.1| hypothetical protein SPAB_00893 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194409875|gb|ACF70094.1| response regulator [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194458929|gb|EDX47768.1| response regulator [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194713345|gb|ACF92566.1| response regulator [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197093375|emb|CAR58825.1| putative two-component system response regulator [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197214560|gb|ACH51957.1| DNA-binding response regulator BaeR [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197242846|gb|EDY25466.1| response regulator [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197290555|gb|EDY29910.1| response regulator [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197936765|gb|ACH74098.1| response regulator [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199606234|gb|EDZ04779.1| response regulator [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204321730|gb|EDZ06929.1| response regulator [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205273054|emb|CAR38003.1| putative two-component system response regulator [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205330587|gb|EDZ17351.1| response regulator [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205335782|gb|EDZ22546.1| response regulator [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205338415|gb|EDZ25179.1| response regulator [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|206709370|emb|CAR33710.1| putative two-component system response regulator [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|261247346|emb|CBG25171.1| putative two-component system response regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267994189|gb|ACY89074.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301158692|emb|CBW18204.1| putative two-component system response regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312913123|dbj|BAJ37097.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321224781|gb|EFX49844.1| Response regulator BaeR [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322615161|gb|EFY12083.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322617752|gb|EFY14648.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322624654|gb|EFY21485.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626895|gb|EFY23691.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322634081|gb|EFY30817.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635728|gb|EFY32438.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640267|gb|EFY36930.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322646315|gb|EFY42828.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649408|gb|EFY45844.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322656528|gb|EFY52817.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322661504|gb|EFY57728.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322665608|gb|EFY61792.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322667132|gb|EFY63299.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322671138|gb|EFY67266.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675221|gb|EFY71298.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322680830|gb|EFY76865.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687005|gb|EFY82982.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323130456|gb|ADX17886.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323192769|gb|EFZ77996.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323198799|gb|EFZ83898.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323204931|gb|EFZ89922.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323208234|gb|EFZ93178.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323210956|gb|EFZ95817.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323215741|gb|EGA00484.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323223394|gb|EGA07726.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323227221|gb|EGA11392.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323231186|gb|EGA15301.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233621|gb|EGA17713.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323237691|gb|EGA21751.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323245674|gb|EGA29668.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323247751|gb|EGA31693.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252967|gb|EGA36800.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256769|gb|EGA40494.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323259475|gb|EGA43110.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323268258|gb|EGA51733.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323271952|gb|EGA55368.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326623967|gb|EGE30312.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326628362|gb|EGE34705.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332989065|gb|AEF08048.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 240 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 42/224 (18%), Positives = 84/224 (37%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + I + N + D+ ++ L G L Sbjct: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLINHGDKVLPYVRQTPPDLILLDLML--PGTDGL 70 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118 L R IR S +P++ ++ L + G DD + KP RE + + + Sbjct: 71 TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + P+ + G+ L E R+L+ L GK ++ Q+ + +Y Sbjct: 131 QRELQQQDAESPLMIDESRFQASWCGKALDLTPAEFRLLKTLSLEPGKVFSREQLLNHLY 190 Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + V + ++SHI LR+KL + + + +GY + Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 >gi|298242873|ref|ZP_06966680.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297555927|gb|EFH89791.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 235 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 44/225 (19%), Positives = 92/225 (40%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D + + + L + + ++ L L Sbjct: 5 ILVVDDDRKIVDLIRIYLEKERYQVIIASDGPQALKLARQKQPSLIILDWML--PSIDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ RI+RA +P+I ++ + L + G DD + KP RE++ARV + RR Sbjct: 63 DVCRILRAECDIPIIMLTARSTEDDKLLGLNLGADDYLTKPFSPRELVARVRVVLRRASQ 122 Query: 122 SNNRAETGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 +R V D + + V L +E ++LE L G+ ++ ++ + Sbjct: 123 QKEDDRLPALRLGDLVVDFDAHEARLHNTVVRLTPKEFKLLETLAREPGRAFSRAELVTR 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++G+ D + ++ H+ LRKK+ + + +GY + Sbjct: 183 VFGI-DYEGFDRTIDVHLMNLRKKIEPFPDQPIYLHTVYGVGYKL 226 >gi|290957320|ref|YP_003488502.1| two-component system response regulator [Streptomyces scabiei 87.22] gi|260646846|emb|CBG69943.1| putative two-component system response regulator [Streptomyces scabiei 87.22] Length = 222 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 45/224 (20%), Positives = 93/224 (41%), Gaps = 11/224 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G +++ + S D+ ++ L G Sbjct: 3 LLIVEDEKRLAVSLAKGLTAEGYAVDVVHDGVEGLHRASEGAYDLVILDIML--PGMNGY 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117 + +RA P++ ++ + D+G DD + KP + ++ARV Sbjct: 61 RVCAALRAAGHDVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARVKALLRRRH 120 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 ++ E G +R+ + R + + L +E +LE L+ G+ V+K +I + Sbjct: 121 ASGGASPVHEVGELRLDTAARRVFLTEDEISLTTKEFSVLEQLVLRAGEVVSKAEILEHV 180 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + F + N+VE +IS LR+KL G + + R GY ++ Sbjct: 181 WD-FAYDGDPNIVEVYISTLRRKL----GPTLIKTVRGAGYRLE 219 >gi|227431461|ref|ZP_03913510.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227352827|gb|EEJ43004.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 235 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 43/229 (18%), Positives = 91/229 (39%), Gaps = 14/229 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + D +G + + + + D+ ++ L +E Sbjct: 5 LVVDDEKPISDIIKFNLTKEGYDVVTAADGQEALDMYNDENPDLVLLDQML--PEVDGIE 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI----------LARV 112 + R IR+ S VP+I ++ S + + G DD V KP +RE+ V Sbjct: 63 VLRQIRSKSDVPVIMVTAKDSEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRSRKSV 122 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + S G + + G L RE ++L YL + G+ + + Sbjct: 123 SQTSEETFNSTEDIHLGDLVIHPQAYMVSKDGADIELTHREFQLLYYLAQHMGQVMTREH 182 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + ++G +D + V+ + +LR+K+ + + + ++R +GY + Sbjct: 183 LLQQVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPNWLATRRGVGYYL 230 >gi|321315077|ref|YP_004207364.1| two-component response regulator YkoH [Bacillus subtilis BSn5] gi|320021351|gb|ADV96337.1| two-component response regulator (YkoH) [Bacillus subtilis BSn5] Length = 228 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 49/224 (21%), Positives = 93/224 (41%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G + ++ + + ++ L G L Sbjct: 6 ILIVEDEEKIARVLQLELEYEGYGVTIKHNGTEGLEAAAEGGHSLVLLDVML--PGLSGL 63 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +R Q P+I ++ S+ + D G +D V KP E+LAR+ A R+ Sbjct: 64 EVLRRLRKTDQQTPVILLTARDSIPDKVTGLDIGANDYVTKPFEIEELLARIRAALRQNG 123 Query: 121 VSNNRAETGPIRVF----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 T R+ + L RE +L Y++ + + + + QI S+ Sbjct: 124 TKTEDIGTFLTYDDLRVNEKTREVRRGDKEVELTPREFDLLVYMLKHPQQVLTREQILSS 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G FD + NVV+ +I +RKKL + + R +GY+I Sbjct: 184 VWG-FDYIGDTNVVDVYIRYIRKKLDYPYEKQLIHTIRGVGYAI 226 >gi|229122769|ref|ZP_04251978.1| DNA-binding response regulator [Bacillus cereus 95/8201] gi|228660633|gb|EEL16264.1| DNA-binding response regulator [Bacillus cereus 95/8201] Length = 225 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 42/221 (19%), Positives = 93/221 (42%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L DD +++ +G + + + + ++ ++ Sbjct: 6 ILLADDDKHIRELLQYHLQKEGFKVFEAEDGKVAQEVLEKENIHLAIVDIM--MPFVDGY 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L IR + +P+I ++ L F SG DD + KP E++ R+ A+ RR ++ Sbjct: 64 TLCEEIRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQM 123 Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + T + G + + G+ LP +E +L L + G+ ++ ++ ++G+ Sbjct: 124 LSADIITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM 183 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D +E V+ H+ +LR + + + + R LGY ++ Sbjct: 184 -DFEGDERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 223 >gi|205351709|ref|YP_002225510.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205271490|emb|CAR36308.1| phosphate regulon transcriptional regulatory protein PhoB [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326626742|gb|EGE33085.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 229 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 38/222 (17%), Positives = 92/222 (41%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D A +++ + +G + + D+ ++ L G G + Sbjct: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDCAVNKLNEPWPDLILLDWMLPGGSGLQF 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ + +P++ ++ + + ++G DD + KP +E++AR+ A+ RR+ Sbjct: 65 IKHLKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS 124 Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 E + + + E ++L + M + + ++ Q+ + ++ Sbjct: 125 PMAVEEVIEMQGLSLDPGSHRVMTGDSPLDMGPTEFKLLHFFMTHPERVYSREQLLNHVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G + VE+ V+ HI +LRK L + V + R GY Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALEHSGHDRMVQTVRGTGYRF 225 >gi|297200104|ref|ZP_06917501.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] gi|297147578|gb|EFH28677.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] Length = 225 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 44/219 (20%), Positives = 90/219 (41%), Gaps = 5/219 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + + +G + A+ D+ ++ L G +E Sbjct: 6 LVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLML--PGRDGIE 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R+IRA S VP++ ++ + +SG DD + KP +E++AR+ A RR + Sbjct: 64 VCRLIRAESGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEEP 123 Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + G + +G+ L E +L L + + + ++G + Sbjct: 124 APEQLAIGDLVIDVAGHSVKREGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWG-Y 182 Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219 A + +V H+ +LR K+ + V + R +GY Sbjct: 183 RHAADTRLVNVHVQRLRSKVEKDPERPEIVVTVRGVGYK 221 >gi|295836531|ref|ZP_06823464.1| transcriptional regulatory protein CseB [Streptomyces sp. SPB74] gi|197699650|gb|EDY46583.1| transcriptional regulatory protein CseB [Streptomyces sp. SPB74] Length = 245 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 50/227 (22%), Positives = 96/227 (42%), Gaps = 15/227 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + D A +G ++ + + D+ ++ L G LE Sbjct: 22 LVVEDDPTIVDAIAARLRAEGFLVQTAQDGPSAVETAEAWQPDLLVLDVML--PGFDGLE 79 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R ++AH VP++ ++ L G DD + KP RE+ ARV + RR++ + Sbjct: 80 VCRRVQAHRPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMREVAARVHVLLRRVERA 139 Query: 123 NNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 A T V R V+GE L E +L L +++ Q+ Sbjct: 140 ALAAATPRSGVLRLGELEVDHAQRRVRVRGEDVHLTPTEFDLLVCLAGTPRAVLSREQLL 199 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + ++ D + V+SHI LR+K+ G + + + +GY+++ Sbjct: 200 AEVWDWADASG-TRTVDSHIKALRRKI----GAERIRTVHGVGYALE 241 >gi|253701123|ref|YP_003022312.1| transcriptional regulator [Geobacter sp. M21] gi|251775973|gb|ACT18554.1| two component transcriptional regulator, winged helix family [Geobacter sp. M21] Length = 225 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 40/226 (17%), Positives = 83/226 (36%), Gaps = 11/226 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++I+D + + +G D+ ++ L G E Sbjct: 5 LIIEDEKDLAELIAFNLEREGFQAIVATDGFDGLEQAVRTLPDLILLDLML--PGMLGTE 62 Query: 63 LPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH---REILARVAAIY 116 + + IR + +P+I ++ + F+ G DD V KP + V Sbjct: 63 VCKNIRKSDRTAGIPVIMLTAKGEEIDKVVGFEVGADDYVVKPFSSRELMLRMKAVLRRS 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + + GPI + + V G E ++L L G+ ++ + Sbjct: 123 KTRPAAATAMQVGPIDIDVERHCVLVNGGEINFTGTEFKLLHTLAQRLGRVQSRDVLLRD 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 ++G ++ + V++HI++LR KL D + + R GY ++ Sbjct: 183 VWG-YNFVDDSRTVDTHITRLRTKLGEAG--DLIKTVRGFGYKLEV 225 >gi|27466936|ref|NP_763573.1| response regulator [Staphylococcus epidermidis ATCC 12228] gi|57865896|ref|YP_190075.1| DNA-binding response regulator YycF [Staphylococcus epidermidis RP62A] gi|242243238|ref|ZP_04797683.1| response regulator [Staphylococcus epidermidis W23144] gi|251811382|ref|ZP_04825855.1| response regulator [Staphylococcus epidermidis BCM-HMP0060] gi|282874739|ref|ZP_06283618.1| response regulator receiver domain protein [Staphylococcus epidermidis SK135] gi|293367563|ref|ZP_06614216.1| DNA-binding response regulator [Staphylococcus epidermidis M23864:W2(grey)] gi|81672853|sp|Q5HK18|WALR_STAEQ RecName: Full=Transcriptional regulatory protein walR gi|81843200|sp|Q8CQK0|WALR_STAES RecName: Full=Transcriptional regulatory protein walR gi|27314478|gb|AAO03615.1|AE016744_18 response regulator [Staphylococcus epidermidis ATCC 12228] gi|57636554|gb|AAW53342.1| DNA-binding response regulator YycF [Staphylococcus epidermidis RP62A] gi|58003341|gb|AAW62233.1| two-component response regulator [Staphylococcus epidermidis] gi|242233187|gb|EES35499.1| response regulator [Staphylococcus epidermidis W23144] gi|251805131|gb|EES57788.1| response regulator [Staphylococcus epidermidis BCM-HMP0060] gi|281296455|gb|EFA88970.1| response regulator receiver domain protein [Staphylococcus epidermidis SK135] gi|291318276|gb|EFE58669.1| DNA-binding response regulator [Staphylococcus epidermidis M23864:W2(grey)] gi|319399899|gb|EFV88145.1| response regulator [Staphylococcus epidermidis FRI909] gi|329728490|gb|EGG64926.1| transcriptional regulatory protein WalR [Staphylococcus epidermidis VCU144] gi|329735741|gb|EGG72022.1| transcriptional regulatory protein WalR [Staphylococcus epidermidis VCU028] Length = 233 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 49/224 (21%), Positives = 93/224 (41%), Gaps = 12/224 (5%) Query: 4 LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63 ++DD + D +G + L D+ ++ L G +E+ Sbjct: 7 VVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIML--PGRDGMEV 64 Query: 64 PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123 R +R ++P+I ++ S + + G DD V KP RE++ARV A RR Sbjct: 65 CREVRKKYEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYSQP 124 Query: 124 --------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 N I ++ D + +GE L RE + YL + G+ + + + Sbjct: 125 AQEVSGATNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHLLQ 184 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218 ++G +D + V+ I +LR+K+ + + + ++R +GY Sbjct: 185 TVWG-YDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGY 227 >gi|322417814|ref|YP_004197037.1| winged helix family two component transcriptional regulator [Geobacter sp. M18] gi|320124201|gb|ADW11761.1| two component transcriptional regulator, winged helix family [Geobacter sp. M18] Length = 224 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 42/221 (19%), Positives = 90/221 (40%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D V ++ + E L D+ ++ L + L Sbjct: 3 ILVVEDEKKVASFIKRGLEEEQYEVHTAADGEEGLKLALEKPFDLVVLDWML--PKKDGL 60 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119 + + +R P++ ++ S++ + DSG DD + KP E+LARV A + R Sbjct: 61 SVLKELRERKNVTPILMLTAKDSVEDIVAGLDSGSDDYLTKPFAFAELLARVRALMRRSE 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +R+ + + L +E +LEY M N + + +T I ++ Sbjct: 121 LDRGAEIRFADLRLDPVTHKVWRKDKEIDLTAKEYGLLEYFMRNPHQVLTRTMIAEHVWD 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + N+++ +++ LRKK+ + + + R +GY + Sbjct: 181 -YTFDSFTNIIDVYVNYLRKKIDREADKKLIHTVRGVGYIL 220 >gi|220906986|ref|YP_002482297.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 7425] gi|219863597|gb|ACL43936.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7425] Length = 228 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 45/225 (20%), Positives = 91/225 (40%), Gaps = 13/225 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + G L D+ ++ L G+ L Sbjct: 4 ILIVEDEPRIAAFVEKGLRSHGFVTSVATDANEALDLALGGAFDLLILDLGL--PGQDGL 61 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ +R + P+I ++ ++ + F+ G DD + KP E+L RV A R Sbjct: 62 QVLGQLRGQGESLPIIILTARDDIRDKIASFEGGADDYLTKPFRFEELLLRVKARLRTNY 121 Query: 121 VSNNRAETGPIRVFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 R E ++ + R +V L RE + E + G+ +++ Q+ Sbjct: 122 GVPKRQEESVLKCDNVLLDLRTRKVKVGDRWLELSAREFTLAETFFRHPGQVLSREQLLD 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G +D N+V+ ++ LRKKL N + +++ R +GY + Sbjct: 182 RVWG-YDYDPGSNIVDVYVGYLRKKLGN----ELIETVRGMGYRL 221 >gi|296268755|ref|YP_003651387.1| winged helix family two component transcriptional regulator [Thermobispora bispora DSM 43833] gi|296091542|gb|ADG87494.1| two component transcriptional regulator, winged helix family [Thermobispora bispora DSM 43833] Length = 225 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 45/219 (20%), Positives = 90/219 (41%), Gaps = 5/219 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD A + + + +G + R D+ ++ L G ++ Sbjct: 6 LVVDDDAALAEMLGIVLRGEGFEPSFVYDGDKALDAFREIRPDLVLLDLML--PGADGID 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IRA S VP++ ++ + +SG DD + KP +E++AR+ A RR + Sbjct: 64 VCRRIRAESGVPIVMLTAKSDTVDVVLGLESGADDYIIKPFKPKELIARIRARLRRTEEP 123 Query: 123 NNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + G I + G + + L E +L L + + + ++G + Sbjct: 124 TPEILQIGDITIDVAGHSVKRGDQTINLTPLEFDLLVALARKPRQVFTREVLLEQVWG-Y 182 Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219 A + +V H+ +LR K+ + V + R +GY Sbjct: 183 RHAADTRLVNVHVQRLRAKIEKDPEHPEIVVTVRGVGYK 221 >gi|291556132|emb|CBL33249.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium siraeum V10Sc8a] Length = 235 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 51/234 (21%), Positives = 92/234 (39%), Gaps = 16/234 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +DG ++ F + S D++ ++ L Sbjct: 5 ILIVDDEKEIADLIEVYLKNDGYTVHKFYNGMDALKCIESQNLDLAILDVML--PDIDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + IR P+I ++ + G DD + KP + E++ARV RR Sbjct: 63 RICQKIREQYYYPIIMLTAKVEDTDKIMGLTIGADDYITKPFNPLEVVARVKTQLRRYVR 122 Query: 122 SNN------------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 NN + + + + + G+ L E IL YL NRGK ++ Sbjct: 123 YNNAANTEEKDAPIAEHDVRGLIINKNTHKCTLYGKEVTLTPIEFSILWYLCENRGKVIS 182 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDW 222 ++F I+G N V +HI +LR+KL + + +GY+I+ Sbjct: 183 SEELFENIWGEKFLD-NNNTVMAHIGRLREKLNEPAKKPKFIKTVWGVGYTIEK 235 >gi|229169551|ref|ZP_04297255.1| Two-component response regulator [Bacillus cereus AH621] gi|228613941|gb|EEK71062.1| Two-component response regulator [Bacillus cereus AH621] Length = 229 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 53/229 (23%), Positives = 89/229 (38%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++++ F + + + L D+ ++ L Sbjct: 5 ILIVEDEDILREILKDYFLSEQYKVLEARDGKEALALFKEEEVDLVILDIML--PELDGW 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR-------EILARVAA 114 + R IR S VP+I ++ TL F+ G DD V KP +L A Sbjct: 63 SVCRRIRKTSGVPIIMLTARVDEDDTLLGFELGADDYVAKPYSPPILLARAKRLLESRQA 122 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + L+ ++ I V R V L E IL Y M N+G + + Q+ Sbjct: 123 SKKPLENEDDTLSIHGIHVHFPSRTVTVDEADITLTHTEFEILAYFMKNQGIVLTREQLI 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 S I+G ++ A ++ V SHI LR KL K + + GY + N Sbjct: 183 SRIWG-YEFAGDDRTVNSHIRNLRNKLGEKS--KHITTVVRTGYKFEGN 228 >gi|225868204|ref|YP_002744152.1| alkaline phosphatase synthesis transcriptional regulatory protein [Streptococcus equi subsp. zooepidemicus] gi|225870859|ref|YP_002746806.1| alkaline phosphatase synthesis transcriptional regulatory protein [Streptococcus equi subsp. equi 4047] gi|225700263|emb|CAW94500.1| alkaline phosphatase synthesis transcriptional regulatory protein [Streptococcus equi subsp. equi 4047] gi|225701480|emb|CAW98631.1| alkaline phosphatase synthesis transcriptional regulatory protein [Streptococcus equi subsp. zooepidemicus] Length = 240 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 45/229 (19%), Positives = 84/229 (36%), Gaps = 14/229 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L+DD + +G E L D ++ L +E Sbjct: 6 LLVDDEEPILRLLDYHLAKEGFVTEMVTDGRTALALAEREPYDFIVLDIML--PQLDGIE 63 Query: 63 LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112 + + +RA S+ P++ +S + + G DD V KP RE Sbjct: 64 VCKRLRAKGSKTPIMMVSAKSDEFDKVLALELGADDYVTKPFSPRELLARVKAILRRTEA 123 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + +R++ + + E+ PL +E +L YLM + + + + Sbjct: 124 EISGDGEERREPFYTMSQLRLYPERHEVYKDKELLPLTPKEYELLLYLMKHPNMTLTRER 183 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + I+G +D E +V+ HI KLR+K+ + + + R GY Sbjct: 184 LLERIWG-YDFGQETRLVDVHIGKLREKIEDNPKAPQYIQTIRGYGYKF 231 >gi|6448492|emb|CAB61229.1| vanr protein [Bacillus circulans] Length = 231 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 48/229 (20%), Positives = 88/229 (38%), Gaps = 10/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D ++ ++ + + + D++ ++ L G L Sbjct: 5 ILVVDDEHDIADLVELYLKNENYTVFKYYTAKEALDCIDKTELDLAILDIML--PGASGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + IR P+I ++ S + G DD + KP E++ARV A RR K Sbjct: 63 SICQKIRDKYTYPIIMLTAKDSEIDKITGLTIGADDYITKPFRPLELIARVKAQLRRYKK 122 Query: 122 SNNRAETGPIRVFS-------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + E + + + + + L E IL L N+G V+ QIF Sbjct: 123 YSGVTEQNENIIVHSGLVININTHECFLNEKPLSLTPTEFSILRILCENKGNVVSSEQIF 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDW 222 I+G N + HI LR+K+ + + +GY I+ Sbjct: 183 HEIWGEEYFNKSNNTITVHIRHLREKMNATIDNPKYIKTVWGVGYKIEK 231 >gi|320533912|ref|ZP_08034489.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 171 str. F0337] gi|320133876|gb|EFW26247.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 171 str. F0337] Length = 239 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 40/220 (18%), Positives = 86/220 (39%), Gaps = 5/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A + + + + + + D+ ++ L G + Sbjct: 18 ILVVDDDASLAEMIGIMLESESYTPTLCHDGAKALDTFHEVNPDLVLLDLML--PGLDGV 75 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-ILARVAAIYRRLK 120 E+ R+IR+ S VP+I ++ Q + ++G DD V KP +E + + R Sbjct: 76 EICRLIRSESDVPIIMLTARTDTQDVVAGLEAGADDYVTKPFKSKELLARVSTRLRRTNP 135 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + G + + G + + L E +L L + K + ++ S ++G Sbjct: 136 GAAEHVRAGDLDIDVAGHQVKRGESIISLTPLEFELLVTLARSPWKVFTREELLSQVWG- 194 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYS 219 + + +V H+ +LR K+ + + R +GY Sbjct: 195 YQHPADTRLVNVHVQRLRAKIEKDPERPSIVVTVRGVGYR 234 >gi|225175429|ref|ZP_03729424.1| two component transcriptional regulator, winged helix family [Dethiobacter alkaliphilus AHT 1] gi|225169181|gb|EEG77980.1| two component transcriptional regulator, winged helix family [Dethiobacter alkaliphilus AHT 1] Length = 230 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 38/226 (16%), Positives = 86/226 (38%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ + ++G ++ + + + + ++ + Sbjct: 5 ILVVDDEEKIRRILRQVLENEGFTVLEAENGSEALSVFLNKNPVLVILDVM--MPEMDGI 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR------VAAI 115 E + IR P+I +S +L F +DD V+KP E+ R Sbjct: 63 EFLKKIRPQFDTPVIILSAKDALVDKAVGFTLDIDDYVSKPFSALEMAMRVKAVLKRYRK 122 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + + + G + + D GE L RE ++L LM N G +++ Q+ Sbjct: 123 VEKSSAAQDIVKIGELEINFDSYQLFAGGEEIDLTPREFKLLGILMRNAGMVLSREQLLE 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + + + NV+ + +LR+K+ + + + +GY Sbjct: 183 -LADDREYFGDLNVINVFVRRLRQKIEKDPANPKYLQTVWGVGYKF 227 >gi|281355429|ref|ZP_06241923.1| two component transcriptional regulator, winged helix family [Victivallis vadensis ATCC BAA-548] gi|281318309|gb|EFB02329.1| two component transcriptional regulator, winged helix family [Victivallis vadensis ATCC BAA-548] Length = 231 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 46/228 (20%), Positives = 93/228 (40%), Gaps = 14/228 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 ++++D +++ DG + S E + D+ ++ L G Sbjct: 6 ILVVEDEEAIQELIRYNLNKDGYDRVRCCESGEEALAAATEFAPDLILLDLML--PGMDG 63 Query: 61 LELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 L + R ++ S +P+I ++ + + G DD + KP + ++AR+ ++ R Sbjct: 64 LAVCRRLKSDTRTSAIPIIMLTAKSEESDIVIGLEMGADDYLPKPFSPKVLIARIKSVLR 123 Query: 118 RLKVSN-----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 R+K S+ + GP+ + R+ + G L E L L G + Q Sbjct: 124 RVKPSDAEAAAGTIKRGPLCMNRGTREALLDGRPMTLTFSEFETLYLLARRPGWVYTRGQ 183 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I + + G D V E ++ + +R+KL D +++ R +GY Sbjct: 184 IVNEVKG-DDYPVTERAIDVQMVSIRRKLGTHG--DLIETVRGVGYRF 228 >gi|86739037|ref|YP_479437.1| two component transcriptional regulator [Frankia sp. CcI3] gi|86565899|gb|ABD09708.1| two component transcriptional regulator, winged helix family [Frankia sp. CcI3] Length = 406 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 49/224 (21%), Positives = 97/224 (43%), Gaps = 10/224 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + +G + L R D ++ L LE Sbjct: 162 LVVDDETTLAELLSMALRYEGWEVRSAADGRGALRLARDFRPDAVVLDIML--PDMDGLE 219 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R +RA S P++ ++ +++ + +G DD V KP E++AR+ + RR Sbjct: 220 VLRRLRAESPDVPVLFLTARDAVEDRVAGLTAGGDDYVTKPFSLEELVARLRGLMRRAAR 279 Query: 122 SNNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + G + + + R+ + G+ L E +L + M N + ++K QI Sbjct: 280 TTEALQGARLVVGDLTMDEESREVQRAGQPVHLTATEFELLRFFMRNPRRVLSKAQILDR 339 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +D + NVVE ++S LRKK+ + + + R GY + Sbjct: 340 VW-NYDFGGQANVVELYVSYLRKKI-DAGRPPMIHTMRGAGYVL 381 >gi|116490221|ref|YP_809765.1| DNA-binding response regulator [Oenococcus oeni PSU-1] gi|290889603|ref|ZP_06552693.1| hypothetical protein AWRIB429_0083 [Oenococcus oeni AWRIB429] gi|116090946|gb|ABJ56100.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Oenococcus oeni PSU-1] gi|290480801|gb|EFD89435.1| hypothetical protein AWRIB429_0083 [Oenococcus oeni AWRIB429] Length = 237 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 50/229 (21%), Positives = 95/229 (41%), Gaps = 15/229 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + + +S D+ ++ L + Sbjct: 4 ILVVDDEKPISDVIKFNLQKEGYDVVTAFDGREALEVFASENPDLVLLDQML--PEIEGT 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 E+ R IR++S P+I ++ S + + G DD V KP +RE++ARV A RR Sbjct: 62 EVLRQIRSNSSTPVIIVTAKDSEIDKVVGLEMGADDYVTKPFSNRELVARVKANLRRQDA 121 Query: 120 ---------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 S + + + D G L RE +L YL G+ + + Sbjct: 122 TLPGVDASGDHSQKEIKVADLIIRPDAYTVTKNGIDLDLTHREFDLLHYLARRPGQVLTR 181 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGY 218 + + ++G FD + V+ + +LR+K+ + + + +KR +GY Sbjct: 182 EALLTEVWG-FDYFGDVRTVDVTVRRLREKVEDSPSRPEILMTKRGVGY 229 >gi|328951186|ref|YP_004368521.1| two component transcriptional regulator, winged helix family [Marinithermus hydrothermalis DSM 14884] gi|328451510|gb|AEB12411.1| two component transcriptional regulator, winged helix family [Marinithermus hydrothermalis DSM 14884] Length = 224 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 49/219 (22%), Positives = 90/219 (41%), Gaps = 5/219 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + +G E ++ ++ L LE Sbjct: 7 LIVEDEKDIARFIELELQAEGYRTEVAYDGITGLSKFRETSPNLVILDLML--PVMDGLE 64 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR S VP++ ++ ++ ++ D+G DD + KP E+LARV A RR+ + Sbjct: 65 VARRIRKTSNVPILILTAKDAVTDKVEGLDAGADDYLVKPFSIEELLARVRAHLRRVTPA 124 Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + +GR+ G L +E +LE L + GK ++ +I ++ Sbjct: 125 ITGEIRVADLIINLEGREVFRGGRRIELSNKEFELLELLARSPGKVFSRFEIEEKVW--P 182 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 NVV+ +I LRKKL + + R +GY + Sbjct: 183 GYQGGSNVVDVYIGYLRKKLEAGGERRLIHTVRGVGYVL 221 >gi|300172950|ref|YP_003772116.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Leuconostoc gasicomitatum LMG 18811] gi|299887329|emb|CBL91297.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Leuconostoc gasicomitatum LMG 18811] Length = 229 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 41/225 (18%), Positives = 84/225 (37%), Gaps = 11/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +G + + L D ++ L + Sbjct: 4 ILVVDDEPAISTLLKYNLEQNGYQVTIATDGQSAYELIGEQTFDAILLDLML--PVMDGM 61 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAA 114 + + +R P++ ++ + + G DD + KP RE+ + R + Sbjct: 62 TVLKNLRQDKIATPVLLVTAKGDEFDRVFGLELGADDYITKPFSLREVLARLKAVLRRSQ 121 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 R + E I + + + G+ L RE +L Y G+ + + I Sbjct: 122 TERSTSDKPDVIEIQDIVIDDNKKVVTKSGKNLTLTPREYELLLYFSQRVGRVIDRETIL 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218 +A++G ++ E +V+ HIS LR+K+ N + + R GY Sbjct: 182 TAVWG-YEFVGESRMVDMHISNLREKVENNPKSPQILKTVRGFGY 225 >gi|194446630|ref|YP_002041403.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194405293|gb|ACF65515.1| response regulator [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 240 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 49/224 (21%), Positives = 89/224 (39%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + I + N + D+ ++ L G L Sbjct: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLINHGDKVLPYVRQTPPDLILLDLML--PGTDGL 70 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R IR S +P++ ++ L + G DD + KP RE++ARV I RR K Sbjct: 71 TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKNILRRCKP 130 Query: 122 SNNRAETG---PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + P+ + G+ L E R+L+ L GK ++ Q+ + +Y Sbjct: 131 QRELQQQDAESPLMIDESRFQASWCGKALDLTPAEFRLLKTLSLEPGKVFSREQLLNHLY 190 Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + V + ++SHI LR+KL + + + +GY + Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 >gi|42781025|ref|NP_978272.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|42736946|gb|AAS40880.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] Length = 232 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 39/229 (17%), Positives = 84/229 (36%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +G + ++ E + + ++ ++ + Sbjct: 6 ILIVDDDQDIVRFMNVNLMQEGFKVFSAHNGEEALEIINKNNIQLAILDIM--MPQMDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARVA 113 EL R IR +P++ +S S + F +G DD + KP E Sbjct: 64 ELCRRIREKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 123 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 ++V + + + R + GE L + E IL + A + + +I Sbjct: 124 FNQNAVQVIKKKINIRGLEIDEVSRTVMLYGETINLTKTEYDILYLMAAAKNRVFTIEEI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221 + +++ N V HI++LR K+ + + + +GY I+ Sbjct: 184 YESVWKERAYE-SNNTVMVHIARLRNKIEEDPKEPKFIQNVWGVGYKIE 231 >gi|197118248|ref|YP_002138675.1| winged-helix phosphate transcriptional response regulator [Geobacter bemidjiensis Bem] gi|197087608|gb|ACH38879.1| winged-helix phosphate transcriptional response regulator [Geobacter bemidjiensis Bem] Length = 226 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 41/224 (18%), Positives = 90/224 (40%), Gaps = 7/224 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61 ++I+D + + +G + D+ ++ L G V Sbjct: 5 LIIEDEKDLAELLSFNLEREGYKTVIALDGAEGLEAVERVQPDLILLDLMLPGMFGTDVC 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 + + + +P++ ++ + F+ G DD V KP RE++ RV Sbjct: 65 KTVKKSEKSAHIPVVMLTAKGEEIDKVVGFEVGADDYVIKPFSTRELMLRVKAVLRRKAP 124 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + N G IR+ ++ + V G+ E ++L L+ G+ ++ + ++ Sbjct: 125 EPAATNIINVGGIRIDTERHEVTVNGDEINFTTTEFKLLYTLVMRFGRVQSRDVLLRDVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 G ++ + V++HI++LR K+ N D + + R GY ++ Sbjct: 185 G-YNFVEDTRTVDTHITRLRTKMGNAG--DMIKTVRGFGYKLEV 225 >gi|118466812|ref|YP_879977.1| DNA-binding response regulator PhoP [Mycobacterium avium 104] gi|254773640|ref|ZP_05215156.1| DNA-binding response regulator PhoP [Mycobacterium avium subsp. avium ATCC 25291] gi|118168099|gb|ABK68996.1| DNA-binding response regulator PhoP [Mycobacterium avium 104] Length = 239 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 51/224 (22%), Positives = 93/224 (41%), Gaps = 10/224 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD A + + G + + AR D ++ G Sbjct: 16 LVVDDEANIVELLSVSLKFQGFEVHTATNGAQALDRAREARPDAVILDVM--MPGMDGFG 73 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118 + R +RA P + ++ SLQ + G DD V KP E++AR+ I RR Sbjct: 74 VLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAGK 133 Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + R I + + + G+ L E +L Y + N G ++K +I Sbjct: 134 GGAEPRSARLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDH 193 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +D + NVVES++S LR+K+ + + + R +GY + Sbjct: 194 VW-RYDFGGDVNVVESYVSYLRRKI-DTGEKRLLHTLRGVGYVL 235 >gi|19552100|ref|NP_600102.1| two-component system, response regulator [Corynebacterium glutamicum ATCC 13032] gi|11526729|gb|AAG36759.1|AF119221_1 response regulator [Corynebacterium glutamicum] gi|21323640|dbj|BAB98267.1| Two-component system, response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Corynebacterium glutamicum ATCC 13032] Length = 232 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 41/228 (17%), Positives = 86/228 (37%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V+D +G ++ + + + ++ G L Sbjct: 3 ILVVDDEQAVRDSLRRSLSFNGYNVVLAEDGIQALEMIDKEQPALVILDVM--MPGMDGL 60 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI--------HHREILARV 112 E+ R +R P++ ++ ++ + D+G DD + KP + Sbjct: 61 EVCRHLRSEGDDRPILILTARDNVSDRVGGLDAGADDYLAKPFALEELLARVRSLVRRSA 120 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + G + + + RD G L R E +L+ L+ N+ K + + Q Sbjct: 121 VESNQSSSIEQALLSCGDLTLDPESRDVYRNGRAISLTRTEFALLQLLLKNQRKVLTRAQ 180 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I ++G D N +E +I LR+K + + + R +GY + Sbjct: 181 ILEEVWGC-DFPTSGNALEVYIGYLRRKTELEGEDRLIHTVRGVGYVL 227 >gi|87124761|ref|ZP_01080609.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. RS9917] gi|86167640|gb|EAQ68899.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. RS9917] Length = 249 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 41/230 (17%), Positives = 85/230 (36%), Gaps = 14/230 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSL---EFEEWLQSSAREDVSAIEAFLIGKGE 58 +L++D +++ +G + ++ D+ ++ L G Sbjct: 22 LLLVEDDESIRETVREALKAEGFDVLACGDGAEALAALTDAAAEPVDLVVLDLML--PGL 79 Query: 59 KVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPI------HHREILAR 111 L+L R +R + P++ IS S + + G DD + KP L R Sbjct: 80 GGLDLCRQLRKNDNSTPILVISARDSETDRVLGLEVGADDYLVKPFGLRELVARCRALLR 139 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + + + +F++ + L +E +ILE + N + ++ Sbjct: 140 RSQQPSSSEAPPQVYRHENLCLFAEECRVSRDDKDLSLSPKEYKILELFIKNPRRVWSRD 199 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 Q+ I+G+ D + V+ HI LR+K+ + + + R GY Sbjct: 200 QLLERIWGI-DFVGDTKTVDVHIRWLREKIEDEPSAPKHIRTVRGFGYRF 248 >gi|16130019|ref|NP_416583.1| DNA-binding response regulator in two-component regulatory system with BaeS [Escherichia coli str. K-12 substr. MG1655] gi|26248453|ref|NP_754493.1| DNA-binding transcriptional regulator BaeR [Escherichia coli CFT073] gi|74312603|ref|YP_311022.1| DNA-binding transcriptional regulator BaeR [Shigella sonnei Ss046] gi|82543453|ref|YP_407400.1| DNA-binding transcriptional regulator BaeR [Shigella boydii Sb227] gi|82777414|ref|YP_403763.1| DNA-binding transcriptional regulator BaeR [Shigella dysenteriae Sd197] gi|89108899|ref|AP_002679.1| DNA-binding response regulator in two-component regulatory system with BaeS [Escherichia coli str. K-12 substr. W3110] gi|91211367|ref|YP_541353.1| DNA-binding transcriptional regulator BaeR [Escherichia coli UTI89] gi|110642289|ref|YP_670019.1| DNA-binding transcriptional regulator BaeR [Escherichia coli 536] gi|117624275|ref|YP_853188.1| DNA-binding transcriptional regulator BaeR [Escherichia coli APEC O1] gi|157161570|ref|YP_001458888.1| DNA-binding transcriptional regulator BaeR [Escherichia coli HS] gi|170081709|ref|YP_001731029.1| DNA-binding response regulator in two-component regulatory system with BaeS [Escherichia coli str. K-12 substr. DH10B] gi|170680336|ref|YP_001743060.1| DNA-binding transcriptional regulator BaeR [Escherichia coli SMS-3-5] gi|188492527|ref|ZP_02999797.1| DNA-binding response regulator BaeR [Escherichia coli 53638] gi|191169545|ref|ZP_03031273.1| DNA-binding response regulator BaeR [Escherichia coli B7A] gi|191169921|ref|ZP_03031475.1| DNA-binding response regulator BaeR [Escherichia coli F11] gi|193062926|ref|ZP_03044019.1| DNA-binding response regulator BaeR [Escherichia coli E22] gi|194428867|ref|ZP_03061401.1| DNA-binding response regulator BaeR [Escherichia coli B171] gi|215487302|ref|YP_002329733.1| DNA-binding transcriptional regulator BaeR [Escherichia coli O127:H6 str. E2348/69] gi|218549496|ref|YP_002383287.1| DNA-binding transcriptional regulator BaeR [Escherichia fergusonii ATCC 35469] gi|218558959|ref|YP_002391872.1| DNA-binding transcriptional regulator BaeR [Escherichia coli S88] gi|218690137|ref|YP_002398349.1| DNA-binding transcriptional regulator BaeR [Escherichia coli ED1a] gi|218705614|ref|YP_002413133.1| DNA-binding transcriptional regulator BaeR [Escherichia coli UMN026] gi|227887135|ref|ZP_04004940.1| DNA-binding response regulator in two-component regulatory system with BaeS [Escherichia coli 83972] gi|237704536|ref|ZP_04535017.1| transcriptional response regulatory protein [Escherichia sp. 3_2_53FAA] gi|238901269|ref|YP_002927065.1| DNA-binding response regulator in two-component regulatory system with BaeS [Escherichia coli BW2952] gi|253772987|ref|YP_003035818.1| DNA-binding transcriptional regulator BaeR [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254162070|ref|YP_003045178.1| DNA-binding transcriptional regulator BaeR [Escherichia coli B str. REL606] gi|256022229|ref|ZP_05436094.1| DNA-binding transcriptional regulator BaeR [Escherichia sp. 4_1_40B] gi|260844689|ref|YP_003222467.1| DNA-binding response regulator BaeR in two-component regulatory system with BaeS [Escherichia coli O103:H2 str. 12009] gi|291283320|ref|YP_003500138.1| DNA-binding response regulator in two-component regulatory system with BaeS [Escherichia coli O55:H7 str. CB9615] gi|293405554|ref|ZP_06649546.1| DNA-binding transcriptional regulator BaeR [Escherichia coli FVEC1412] gi|293410442|ref|ZP_06654018.1| DNA-binding transcriptional regulator BaeR [Escherichia coli B354] gi|293415367|ref|ZP_06658010.1| DNA-binding transcriptional regulator BaeR [Escherichia coli B185] gi|293446434|ref|ZP_06662856.1| DNA-binding transcriptional regulator BaeR [Escherichia coli B088] gi|297520052|ref|ZP_06938438.1| DNA-binding transcriptional regulator BaeR [Escherichia coli OP50] gi|298381238|ref|ZP_06990837.1| DNA-binding transcriptional regulator BaeR [Escherichia coli FVEC1302] gi|300897072|ref|ZP_07115538.1| response regulator receiver domain protein [Escherichia coli MS 198-1] gi|300930968|ref|ZP_07146328.1| response regulator receiver domain protein [Escherichia coli MS 187-1] gi|300955102|ref|ZP_07167506.1| response regulator receiver domain protein [Escherichia coli MS 175-1] gi|300978917|ref|ZP_07174430.1| response regulator receiver domain protein [Escherichia coli MS 45-1] gi|300981663|ref|ZP_07175649.1| response regulator receiver domain protein [Escherichia coli MS 200-1] gi|301021219|ref|ZP_07185252.1| response regulator receiver domain protein [Escherichia coli MS 69-1] gi|301026387|ref|ZP_07189832.1| response regulator receiver domain protein [Escherichia coli MS 196-1] gi|306814798|ref|ZP_07448960.1| DNA-binding transcriptional regulator BaeR [Escherichia coli NC101] gi|307138737|ref|ZP_07498093.1| DNA-binding transcriptional regulator BaeR [Escherichia coli H736] gi|309787850|ref|ZP_07682460.1| transcriptional regulatory protein baeR [Shigella dysenteriae 1617] gi|312967314|ref|ZP_07781530.1| transcriptional regulatory protein baeR [Escherichia coli 2362-75] gi|312973671|ref|ZP_07787843.1| transcriptional regulatory protein baeR [Escherichia coli 1827-70] gi|331642699|ref|ZP_08343834.1| transcriptional regulatory protein BaeR [Escherichia coli H736] gi|331647732|ref|ZP_08348824.1| transcriptional regulatory protein BaeR [Escherichia coli M605] gi|331658159|ref|ZP_08359121.1| transcriptional regulatory protein BaeR [Escherichia coli TA206] gi|331663575|ref|ZP_08364485.1| transcriptional regulatory protein BaeR [Escherichia coli TA143] gi|59799175|sp|P69228|BAER_ECOLI RecName: Full=Transcriptional regulatory protein BaeR gi|59799176|sp|P69229|BAER_ECOL6 RecName: Full=Transcriptional regulatory protein BaeR gi|26108858|gb|AAN81061.1|AE016763_20 Transcriptional Regulatory protein baeR [Escherichia coli CFT073] gi|216533|dbj|BAA03141.1| BaeR [Escherichia coli] gi|1736788|dbj|BAA15935.1| DNA-binding response regulator in two-component regulatory system with BaeS [Escherichia coli str. K12 substr. W3110] gi|1788394|gb|AAC75140.1| DNA-binding response regulator in two-component regulatory system with BaeS [Escherichia coli str. K-12 substr. MG1655] gi|73856080|gb|AAZ88787.1| transcriptional response regulatory protein [Shigella sonnei Ss046] gi|81241562|gb|ABB62272.1| transcriptional response regulatory protein [Shigella dysenteriae Sd197] gi|81244864|gb|ABB65572.1| transcriptional response regulatory protein [Shigella boydii Sb227] gi|91072941|gb|ABE07822.1| transcriptional response regulatory protein BaeR [Escherichia coli UTI89] gi|110343881|gb|ABG70118.1| transcriptional regulatory protein BaeR [Escherichia coli 536] gi|115513399|gb|ABJ01474.1| DNA-binding response regulator in two-component regulatory system with BaeS [Escherichia coli APEC O1] gi|157067250|gb|ABV06505.1| DNA-binding response regulator BaeR [Escherichia coli HS] gi|169889544|gb|ACB03251.1| DNA-binding response regulator in two-component regulatory system with BaeS [Escherichia coli str. K-12 substr. DH10B] gi|170518054|gb|ACB16232.1| DNA-binding response regulator BaeR [Escherichia coli SMS-3-5] gi|188487726|gb|EDU62829.1| DNA-binding response regulator BaeR [Escherichia coli 53638] gi|190900420|gb|EDV60241.1| DNA-binding response regulator BaeR [Escherichia coli B7A] gi|190909437|gb|EDV69022.1| DNA-binding response regulator BaeR [Escherichia coli F11] gi|192931569|gb|EDV84170.1| DNA-binding response regulator BaeR [Escherichia coli E22] gi|194413035|gb|EDX29323.1| DNA-binding response regulator BaeR [Escherichia coli B171] gi|215265374|emb|CAS09770.1| DNA-binding response regulator BaeR in two-component regulatory system with BaeS [Escherichia coli O127:H6 str. E2348/69] gi|218357037|emb|CAQ89669.1| DNA-binding response regulator in two-component regulatory system with BaeS [Escherichia fergusonii ATCC 35469] gi|218365728|emb|CAR03464.1| DNA-binding response regulator in two-component regulatory system with BaeS [Escherichia coli S88] gi|218427701|emb|CAR08608.2| DNA-binding response regulator in two-component regulatory system with BaeS [Escherichia coli ED1a] gi|218432711|emb|CAR13605.1| DNA-binding response regulator in two-component regulatory system with BaeS [Escherichia coli UMN026] gi|222033844|emb|CAP76585.1| Transcriptional regulatory protein baeR [Escherichia coli LF82] gi|226237431|dbj|BAH46953.1| DNA-binding response regulator in two-component regulatory system with BaeS [Escherichia coli O55:H7] gi|226900902|gb|EEH87161.1| transcriptional response regulatory protein [Escherichia sp. 3_2_53FAA] gi|227835485|gb|EEJ45951.1| DNA-binding response regulator in two-component regulatory system with BaeS [Escherichia coli 83972] gi|238860855|gb|ACR62853.1| DNA-binding response regulator in two-component regulatory system with BaeS [Escherichia coli BW2952] gi|242377732|emb|CAQ32493.1| BaeR transcriptional regulator [Escherichia coli BL21(DE3)] gi|253324031|gb|ACT28633.1| two component transcriptional regulator, winged helix family [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253973971|gb|ACT39642.1| DNA-binding response regulator in two-component regulatory system with BaeS [Escherichia coli B str. REL606] gi|253978165|gb|ACT43835.1| DNA-binding response regulator in two-component regulatory system with BaeS [Escherichia coli BL21(DE3)] gi|257759836|dbj|BAI31333.1| DNA-binding response regulator BaeR in two-component regulatory system with BaeS [Escherichia coli O103:H2 str. 12009] gi|260448820|gb|ACX39242.1| two component transcriptional regulator, winged helix family [Escherichia coli DH1] gi|281179177|dbj|BAI55507.1| two-component response regulator [Escherichia coli SE15] gi|284922073|emb|CBG35152.1| two-component response regulator [Escherichia coli 042] gi|290763193|gb|ADD57154.1| DNA-binding response regulator in two-component regulatory system with BaeS [Escherichia coli O55:H7 str. CB9615] gi|291323264|gb|EFE62692.1| DNA-binding transcriptional regulator BaeR [Escherichia coli B088] gi|291427762|gb|EFF00789.1| DNA-binding transcriptional regulator BaeR [Escherichia coli FVEC1412] gi|291433015|gb|EFF05994.1| DNA-binding transcriptional regulator BaeR [Escherichia coli B185] gi|291470910|gb|EFF13394.1| DNA-binding transcriptional regulator BaeR [Escherichia coli B354] gi|294494062|gb|ADE92818.1| DNA-binding response regulator BaeR [Escherichia coli IHE3034] gi|298278680|gb|EFI20194.1| DNA-binding transcriptional regulator BaeR [Escherichia coli FVEC1302] gi|299879705|gb|EFI87916.1| response regulator receiver domain protein [Escherichia coli MS 196-1] gi|300307464|gb|EFJ61984.1| response regulator receiver domain protein [Escherichia coli MS 200-1] gi|300317945|gb|EFJ67729.1| response regulator receiver domain protein [Escherichia coli MS 175-1] gi|300359122|gb|EFJ74992.1| response regulator receiver domain protein [Escherichia coli MS 198-1] gi|300398228|gb|EFJ81766.1| response regulator receiver domain protein [Escherichia coli MS 69-1] gi|300409550|gb|EFJ93088.1| response regulator receiver domain protein [Escherichia coli MS 45-1] gi|300461194|gb|EFK24687.1| response regulator receiver domain protein [Escherichia coli MS 187-1] gi|305852192|gb|EFM52644.1| DNA-binding transcriptional regulator BaeR [Escherichia coli NC101] gi|307554152|gb|ADN46927.1| transcriptional regulatory protein BaeR [Escherichia coli ABU 83972] gi|307626375|gb|ADN70679.1| DNA-binding transcriptional regulator BaeR [Escherichia coli UM146] gi|308924249|gb|EFP69746.1| transcriptional regulatory protein baeR [Shigella dysenteriae 1617] gi|309702403|emb|CBJ01725.1| two-component response regulator [Escherichia coli ETEC H10407] gi|310332266|gb|EFP99501.1| transcriptional regulatory protein baeR [Escherichia coli 1827-70] gi|312288122|gb|EFR16026.1| transcriptional regulatory protein baeR [Escherichia coli 2362-75] gi|312946701|gb|ADR27528.1| DNA-binding transcriptional regulator BaeR [Escherichia coli O83:H1 str. NRG 857C] gi|315136713|dbj|BAJ43872.1| DNA-binding response regulator in two-component regulatory system with BaeS [Escherichia coli DH1] gi|315285690|gb|EFU45130.1| response regulator receiver domain protein [Escherichia coli MS 110-3] gi|315294400|gb|EFU53748.1| response regulator receiver domain protein [Escherichia coli MS 153-1] gi|315299488|gb|EFU58739.1| response regulator receiver domain protein [Escherichia coli MS 16-3] gi|320172686|gb|EFW47921.1| Response regulator BaeR [Shigella dysenteriae CDC 74-1112] gi|320183719|gb|EFW58557.1| Response regulator BaeR [Shigella flexneri CDC 796-83] gi|320195942|gb|EFW70566.1| Response regulator BaeR [Escherichia coli WV_060327] gi|320657502|gb|EFX25300.1| DNA-binding transcriptional regulator BaeR [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320663318|gb|EFX30623.1| DNA-binding transcriptional regulator BaeR [Escherichia coli O55:H7 str. USDA 5905] gi|323161803|gb|EFZ47682.1| transcriptional regulatory protein baeR [Escherichia coli E128010] gi|323168797|gb|EFZ54477.1| transcriptional regulatory protein baeR [Shigella sonnei 53G] gi|323936884|gb|EGB33168.1| response regulator receiver domain-containing protein [Escherichia coli E1520] gi|323940850|gb|EGB37038.1| response regulator receiver domain-containing protein [Escherichia coli E482] gi|323948460|gb|EGB44441.1| response regulator receiver domain-containing protein [Escherichia coli H120] gi|323951833|gb|EGB47707.1| response regulator receiver domain-containing protein [Escherichia coli H252] gi|323956115|gb|EGB51867.1| response regulator receiver domain-containing protein [Escherichia coli H263] gi|323961720|gb|EGB57323.1| response regulator receiver domain-containing protein [Escherichia coli H489] gi|324006443|gb|EGB75662.1| response regulator receiver domain protein [Escherichia coli MS 57-2] gi|324013872|gb|EGB83091.1| response regulator receiver domain protein [Escherichia coli MS 60-1] gi|330911916|gb|EGH40426.1| response regulator BaeR [Escherichia coli AA86] gi|331039497|gb|EGI11717.1| transcriptional regulatory protein BaeR [Escherichia coli H736] gi|331043456|gb|EGI15594.1| transcriptional regulatory protein BaeR [Escherichia coli M605] gi|331056407|gb|EGI28416.1| transcriptional regulatory protein BaeR [Escherichia coli TA206] gi|331059374|gb|EGI31351.1| transcriptional regulatory protein BaeR [Escherichia coli TA143] gi|332097147|gb|EGJ02130.1| transcriptional regulatory protein baeR [Shigella boydii 3594-74] gi|332343861|gb|AEE57195.1| transcriptional regulatory protein BaeR [Escherichia coli UMNK88] Length = 240 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 44/224 (19%), Positives = 89/224 (39%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + I + + + D+ ++ L G L Sbjct: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLML--PGTDGL 70 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 L R IR S +P++ ++ L + G DD + KP RE++ARV + Sbjct: 71 TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + P+ + +G++ L E R+L+ L GK ++ Q+ + +Y Sbjct: 131 QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190 Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + V + ++SHI LR+KL + + + +GY + Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 >gi|309806478|ref|ZP_07700483.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners LactinV 03V1-b] gi|308167151|gb|EFO69325.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners LactinV 03V1-b] Length = 234 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 42/225 (18%), Positives = 87/225 (38%), Gaps = 11/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G ++ E D+ ++ L + L Sbjct: 5 ILIVDDEKTISDIIKFNLTKEGYEVDTAYDGEEAVKKVDEFNPDLMILDLML--PKKDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-------ILARVAA 114 E+ R +R + +I ++ + + + G DD V KP +RE L R Sbjct: 63 EVAREVRQSHDLSIIMVTAKAAEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRREI 122 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + N G + + + E G L RE +L YL + G+ + + + Sbjct: 123 TQKSKPDENANITIGNLVIMPEAYIVEKTGTNIELTHREFELLRYLAQHMGQVMTREHLL 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGY 218 ++G +D + V+ + +LR+K+ + + ++R +GY Sbjct: 183 QTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSTPSILVTRRGVGY 226 >gi|158319154|ref|YP_001511661.1| two component transcriptional regulator [Alkaliphilus oremlandii OhILAs] gi|158139353|gb|ABW17665.1| two component transcriptional regulator, winged helix family [Alkaliphilus oremlandii OhILAs] Length = 232 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 35/224 (15%), Positives = 84/224 (37%), Gaps = 9/224 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D ++ DG + S E + + + V ++ L G E Sbjct: 8 LVVEDETSIRKFLAINLNRDGFEVIEAASGEEALDIITRTQPKVVVLDLML--PGIDGFE 65 Query: 63 LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH----REILARVAAIYR 117 + + IR + +I ++ + + G DD + KP + I A + I Sbjct: 66 VCQNIRKSIPNIVIIMLTAKSQDMDKIMGLELGADDYMVKPFNPLELIARIRANLRKIDN 125 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 N + D + +G L E +++ M K ++ +I + + Sbjct: 126 AKGQLNKIISLREFELDLDAQKFYKRGIEIELTPIEFSMMKMFMEGNNKAFSRDEILNIV 185 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 +G + + V+ H+ ++R+K+ + +++ +GY + Sbjct: 186 WGK-NYFGDMKTVDVHVRRIREKIEDDPSNPRIIETVWGVGYRL 228 >gi|21233365|ref|NP_639282.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|21244740|ref|NP_644322.1| two-component system regulatory protein [Xanthomonas axonopodis pv. citri str. 306] gi|58580046|ref|YP_199062.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|66770328|ref|YP_245090.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. 8004] gi|78049672|ref|YP_365847.1| two-component system regulatory protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|84622042|ref|YP_449414.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|166713914|ref|ZP_02245121.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzicola BLS256] gi|188993525|ref|YP_001905535.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. B100] gi|289666417|ref|ZP_06487998.1| two-component system regulatory protein [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289669255|ref|ZP_06490330.1| two-component system regulatory protein [Xanthomonas campestris pv. musacearum NCPPB4381] gi|294626708|ref|ZP_06705303.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294666629|ref|ZP_06731867.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|325923104|ref|ZP_08184797.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Xanthomonas gardneri ATCC 19865] gi|325928269|ref|ZP_08189472.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Xanthomonas perforans 91-118] gi|21110433|gb|AAM38858.1| two-component system regulatory protein [Xanthomonas axonopodis pv. citri str. 306] gi|21115200|gb|AAM43164.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|58424640|gb|AAW73677.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|66575660|gb|AAY51070.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. 8004] gi|78038102|emb|CAJ25847.1| two-component system regulatory protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|84365982|dbj|BAE67140.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|105872979|gb|ABF74730.1| PhoP [Xanthomonas oryzae pv. oryzae] gi|167735285|emb|CAP53499.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris] gi|292598956|gb|EFF43098.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292603596|gb|EFF47009.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|325541359|gb|EGD12898.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Xanthomonas perforans 91-118] gi|325546419|gb|EGD17580.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Xanthomonas gardneri ATCC 19865] Length = 227 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 60/221 (27%), Positives = 102/221 (46%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 +L++D A +++ A +G +++ E ++ DV I+ L G ++ Sbjct: 3 ILLVEDEAPLRETLAARLKREGFAVDAAQDGEEGLYMGREVPFDVGIIDLGLPKMSGMEL 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119 ++ R + P++ ++ S Q ++ G DD + KP H E+LARV A + R Sbjct: 63 IKALR--DEGKKFPVLILTARSSWQDKVEGLKQGADDYLVKPFHVEELLARVNALLRRAA 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S E GP+ + + V G L E ++LEYLM + G+ V+K + IY Sbjct: 121 GWSKPTLECGPVALDLAAQTVSVNGANVDLTSYEYKVLEYLMMHAGELVSKADLTEHIY- 179 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D + NV+E I +LRKKL P+++ R GY Sbjct: 180 QQDFDRDSNVLEVFIGRLRKKLDPDGELKPIETVRGRGYRF 220 >gi|253579765|ref|ZP_04857033.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251848764|gb|EES76726.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 222 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 48/223 (21%), Positives = 93/223 (41%), Gaps = 6/223 (2%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEK 59 M ++D +++ I G GF + ++ ++ L G G Sbjct: 1 MIYCVEDERNIRELLIYTLETTGFKARGFGNGNELMKALKEEIPELILLDIMLPGDDGYT 60 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYR 117 +LE + + + VP+I ++ + + + G DD + KP E +ARV A Sbjct: 61 ILEQLKSMPSVKDVPVIMVTAKEAEFDKVKGLEGGADDYITKPFGMMEFVARVKAVLRRS 120 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + + + + + E L R+E +L+YL+ N+G + + QI + Sbjct: 121 ARQNEDKELHYDELYLNVGRHEVRYREEKVDLTRKEFELLQYLLENKGLVMTRNQILCHV 180 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G +D E V+ H+ LR+KL +++ R +GY I Sbjct: 181 WG-YDFDGETRTVDVHVRTLRQKLGEAGN--LIETVRGVGYRI 220 >gi|227541629|ref|ZP_03971678.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866] gi|227182597|gb|EEI63569.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866] Length = 227 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 47/225 (20%), Positives = 95/225 (42%), Gaps = 9/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + + L +G + D+ ++ L G + Sbjct: 5 LIVEDELSLAEPLAFLLKKEGFDAIIATDGRTALVEFNKNDIDLVLLDLML--PGMSGTD 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +R S VP+I ++ + + + G DD V KP RE++AR+ A+ RR S Sbjct: 63 VCRRLRQVSTVPVIMVTARDTELDKVLGLELGADDYVTKPYSSRELIARIRAVLRRGGDS 122 Query: 123 NNRAETG-----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + + + V G+ +P +E +LEYL+ N G+ + + Q+ + Sbjct: 123 DGSVADQILEGGRVSLDVERHIVTVDGQQVAMPLKEFDLLEYLLRNAGRVLTRGQLIDRV 182 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 +G D + ++ H+ +LR K+ + + R LGY + Sbjct: 183 WGA-DYVGDTKTLDVHVKRLRSKIEAEPSHPTQLVTVRGLGYKFE 226 >gi|237806797|ref|YP_002891237.1| two component transcriptional regulator, winged helix family [Tolumonas auensis DSM 9187] gi|237499058|gb|ACQ91651.1| two component transcriptional regulator, winged helix family [Tolumonas auensis DSM 9187] Length = 240 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 44/229 (19%), Positives = 86/229 (37%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ G + + + ++ ++ G+ Sbjct: 7 ILIVDDDQEIRELLKEYLTRAGFDVLTACDGVEMYQQLALSTPELIILDIM--MPGDDGF 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L + IR SQVP+I ++ + + G DD + KP RE++AR+ A+ RR + Sbjct: 65 SLCQQIRRKSQVPIIMLTAASDEADRVIGLELGADDYIAKPFSPRELMARIKALLRRAEF 124 Query: 122 SNNRAETGPIRVFSDGRD---------PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 E R G L + +L + + G+ + + Sbjct: 125 RQPEKEVVSGRKLKFAGWTLDTRTQLLTHEDGSGIDLTGSDFILLHLFLQHPGQVLDRDT 184 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 I A G + E ++ IS+LR+KL + G + + R GY + Sbjct: 185 ISDATRGR-ESLPMERGIDVQISRLRQKLGDNGKGPRIIKTIRGSGYML 232 >gi|223938485|ref|ZP_03630378.1| two component transcriptional regulator, winged helix family [bacterium Ellin514] gi|223892904|gb|EEF59372.1| two component transcriptional regulator, winged helix family [bacterium Ellin514] Length = 237 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 40/223 (17%), Positives = 88/223 (39%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +++DD + G + E S ++ ++ + G +V Sbjct: 15 ILVVDDEPDAIELIKFNLKSAGYEVITAADGEEALNKARSLLPNLIILDLMIPEVDGLEV 74 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYR 117 ++ R S +P+I ++ + + + G DD V KP RE + R+ + Sbjct: 75 CKILRRDARVSGIPIIMLTAKAAEIDRVLGLELGADDYVTKPFSPRELVLRVKRLLRSGQ 134 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 ++ + + V+G+ L E ++L L RG+ ++ Q+ + Sbjct: 135 TTGEKSDEIILKELSLNIPKHLALVKGKPVELTATEFKLLTVLAQRRGRVQSREQLLQDV 194 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + +D ++ V++H+ +LR+KL +D+ R +GY Sbjct: 195 W-EYDNLIDTRTVDTHMRRLREKLGA--AARYLDTVRGVGYRF 234 >gi|28211551|ref|NP_782495.1| regulatory component of sensory transduction system [Clostridium tetani E88] gi|28203992|gb|AAO36432.1| regulatory component of sensory transduction system [Clostridium tetani E88] Length = 228 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 40/220 (18%), Positives = 89/220 (40%), Gaps = 3/220 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 L++D + + L +G ++ + + + D++ I+ L Sbjct: 4 IFLVEDDKAIARNLMLLLRSEGFTVTHAPTRSEAFAALAGNKFDLALIDISL--PDGNGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + I+ VP+I ++ + + + G DD + KP RE++AR+ R+ Sbjct: 62 TVCTEIKETQDVPVIFLTASGDEASVVTGLNMGADDYITKPFRSRELIARIGTALRKSGR 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 S + E + V + + G L E R+L ++N + + ++ ++ Sbjct: 122 SRSDFEIRGLHVDTASGIVKKNGNEVFLSALEYRLLLVFISNPKSIITRGRLLDELWDAA 181 Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 E V +N + +I +LR+K+ + + + R GY + Sbjct: 182 GEFVNDNTLTVYIKRLREKIENDPASPQIILTVRGTGYRL 221 >gi|116619023|ref|YP_819394.1| DNA-binding response regulator [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116097870|gb|ABJ63021.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 235 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 43/229 (18%), Positives = 90/229 (39%), Gaps = 14/229 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + D +G + + + + D+ ++ L +E Sbjct: 5 LVVDDEKPISDIIKFNLTKEGYDVVTAADGQEALDMYNDENPDLVLLDQML--PEVDGIE 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI----------LARV 112 + R IR+ S VP+I ++ S + + G DD V KP +RE+ V Sbjct: 63 VLRQIRSKSDVPVIMVTAKDSEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRSRKSV 122 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + S G + + G L RE +L YL + G+ + + Sbjct: 123 SQTSEETFNSTEDIHLGDLVIHPQAYMVSKDGADIELTHREFELLYYLAQHIGQVMTREH 182 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + ++G +D + V+ + +LR+K+ + + + ++R +GY + Sbjct: 183 LLQQVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPNWLATRRGVGYYL 230 >gi|328949557|ref|YP_004366892.1| two component transcriptional regulator, winged helix family [Marinithermus hydrothermalis DSM 14884] gi|328449881|gb|AEB10782.1| two component transcriptional regulator, winged helix family [Marinithermus hydrothermalis DSM 14884] Length = 222 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 47/223 (21%), Positives = 93/223 (41%), Gaps = 10/223 (4%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + ++++D + + +G E L + R D+ ++ + G Sbjct: 5 LILIVEDEPRLAEVLERYLRREGFRTERATDGRRALELWRATRPDLILLDLMVPGP--DG 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117 LE+ R +R S VP+I ++ L + G DD V KP RE++ARV + Sbjct: 63 LEITRTLRKTSDVPIIMVTARAEETDRLVGLELGADDYVTKPFSPREVVARVKAVLRRAK 122 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + R G + V + + G+ PL + R+L L G+ V + ++ + + Sbjct: 123 GRVRAPERYTVGRLEVDLEAFEARCAGQPLPLSPAQLRLLAALAREAGRAVPRAELLAQL 182 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D + V++H+ LR++L +++ R +GY + Sbjct: 183 ---GDGDADARTVDAHVKNLRRRLGPCGAQ--IETVRGVGYRL 220 >gi|298695623|gb|ADI98845.1| two-component response regulator [Staphylococcus aureus subsp. aureus ED133] gi|323443678|gb|EGB01291.1| two-component response regulator [Staphylococcus aureus O46] Length = 224 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 48/220 (21%), Positives = 98/220 (44%), Gaps = 4/220 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + + + + S E L R D++ ++ G + Sbjct: 5 LVVDDDPRILNYIASHLQTEHIDAYTQPSGEAALKLLEKQRVDIAVVDIM--MDGMDGFQ 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L ++ +P+I ++ +L F SG DD V KP +E++ R+ A+ RR ++ Sbjct: 63 LCNTLKNDYDIPVIMLTARDALSDKERAFISGTDDYVTKPFEVKELIFRIRAVLRRYNIN 122 Query: 123 NNRAETGPIRVFSDGR-DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 +N T + + +V + LP +E ++L L + + QI I+G + Sbjct: 123 SNSEMTIGNLTLNQSYLELQVSNKTMTLPNKEFQLLFMLATRPKQIFTREQIIEKIWG-Y 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D +E V+ HI +LR++L+ +++ R GY ++ Sbjct: 182 DYEGDERTVDVHIKRLRQRLKKLNATLTIETVRGQGYKVE 221 >gi|290959917|ref|YP_003491099.1| two-component system response regulator [Streptomyces scabiei 87.22] gi|260649443|emb|CBG72558.1| putative two-component system response regulator [Streptomyces scabiei 87.22] Length = 228 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 44/219 (20%), Positives = 90/219 (41%), Gaps = 5/219 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + + +G + A+ D+ ++ L G +E Sbjct: 9 LVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLML--PGRDGIE 66 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R+IRA S VP++ ++ + +SG DD + KP +E++AR+ A RR + Sbjct: 67 VCRLIRAESGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEEP 126 Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + G + +G+ L E +L L + + + ++G + Sbjct: 127 APEQLAIGDLVIDVAGHSVKREGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWG-Y 185 Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219 A + +V H+ +LR K+ + V + R +GY Sbjct: 186 RHAADTRLVNVHVQRLRSKVEKDPERPEIVVTVRGVGYK 224 >gi|255971801|ref|ZP_05422387.1| two-component system response regulator [Enterococcus faecalis T1] gi|256958081|ref|ZP_05562252.1| two-component system response regulator [Enterococcus faecalis DS5] gi|256963908|ref|ZP_05568079.1| two-component system response regulator [Enterococcus faecalis HIP11704] gi|257079968|ref|ZP_05574329.1| two-component system response regulator [Enterococcus faecalis JH1] gi|257417030|ref|ZP_05594024.1| two-component system response regulator [Enterococcus faecalis AR01/DG] gi|294779527|ref|ZP_06744922.1| regulatory protein VanR [Enterococcus faecalis PC1.1] gi|300861078|ref|ZP_07107165.1| putative Response regulator SaeR [Enterococcus faecalis TUSoD Ef11] gi|307268332|ref|ZP_07549713.1| regulatory protein VanR [Enterococcus faecalis TX4248] gi|307272098|ref|ZP_07553361.1| regulatory protein VanR [Enterococcus faecalis TX0855] gi|307276158|ref|ZP_07557289.1| regulatory protein VanR [Enterococcus faecalis TX2134] gi|307286853|ref|ZP_07566935.1| regulatory protein VanR [Enterococcus faecalis TX0109] gi|312951112|ref|ZP_07770017.1| regulatory protein VanR [Enterococcus faecalis TX0102] gi|255962819|gb|EET95295.1| two-component system response regulator [Enterococcus faecalis T1] gi|256948577|gb|EEU65209.1| two-component system response regulator [Enterococcus faecalis DS5] gi|256954404|gb|EEU71036.1| two-component system response regulator [Enterococcus faecalis HIP11704] gi|256987998|gb|EEU75300.1| two-component system response regulator [Enterococcus faecalis JH1] gi|257158858|gb|EEU88818.1| two-component system response regulator [Enterococcus faecalis ARO1/DG] gi|294453406|gb|EFG21813.1| regulatory protein VanR [Enterococcus faecalis PC1.1] gi|295113733|emb|CBL32370.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Enterococcus sp. 7L76] gi|300850117|gb|EFK77867.1| putative Response regulator SaeR [Enterococcus faecalis TUSoD Ef11] gi|306502068|gb|EFM71354.1| regulatory protein VanR [Enterococcus faecalis TX0109] gi|306507152|gb|EFM76291.1| regulatory protein VanR [Enterococcus faecalis TX2134] gi|306511214|gb|EFM80221.1| regulatory protein VanR [Enterococcus faecalis TX0855] gi|306515358|gb|EFM83892.1| regulatory protein VanR [Enterococcus faecalis TX4248] gi|310630888|gb|EFQ14171.1| regulatory protein VanR [Enterococcus faecalis TX0102] gi|315036301|gb|EFT48233.1| regulatory protein VanR [Enterococcus faecalis TX0027] gi|315154148|gb|EFT98164.1| regulatory protein VanR [Enterococcus faecalis TX0031] gi|315158989|gb|EFU03006.1| regulatory protein VanR [Enterococcus faecalis TX0312] gi|315166289|gb|EFU10306.1| regulatory protein VanR [Enterococcus faecalis TX1302] gi|315171873|gb|EFU15890.1| regulatory protein VanR [Enterococcus faecalis TX1342] gi|323481725|gb|ADX81164.1| response regulator vanRG [Enterococcus faecalis 62] gi|327536016|gb|AEA94850.1| response regulator [Enterococcus faecalis OG1RF] Length = 234 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 49/232 (21%), Positives = 92/232 (39%), Gaps = 14/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L+DD + D DG +E F + ++ + D++ ++ L Sbjct: 5 ILLVDDEQEIADLLEVYLTSDGYEVEKFYRGKPALESMANNQFDLAVLDVML--PDIDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + R P+I ++ + G DD + KP + E++AR+ RR + Sbjct: 63 QMVKKAREKYFFPIILLTAKIEDIDKITGLTLGADDYITKPFNPLEVVARIKTQLRRFRK 122 Query: 122 SNNR-----------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 N++ + + + ++ GE L E IL YL +G+ V Sbjct: 123 YNSQASLQQETEGTEIDIHGLVINKIHHTSKLYGEDIFLTPLEFSILWYLAERQGEVVPA 182 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 +F I+G N V +HI +LR+KL+ + + +GY ID Sbjct: 183 EILFEEIWGEKYLENNGNTVMAHIGRLREKLKEPPRKPKFIKTVWGVGYKID 234 >gi|187776729|ref|ZP_02993202.1| hypothetical protein CLOSPO_00244 [Clostridium sporogenes ATCC 15579] gi|187775388|gb|EDU39190.1| hypothetical protein CLOSPO_00244 [Clostridium sporogenes ATCC 15579] Length = 230 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 39/227 (17%), Positives = 88/227 (38%), Gaps = 9/227 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + +G ++ + E + + D+ ++ Sbjct: 5 ILIVDDDKTIVEFLQIFLIKEGYEVKFSYNGEEALNKIKNEKFDLILMDIM--MPKIDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-----AAIY 116 E ++IR + P+I ++ + Q + F SG DD + KP E+ R+ + Sbjct: 63 EAIKVIRKFTNTPIIFLTAKDNQQDKIKGFISGCDDYITKPFDLIELSLRMSAILRRSNV 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 R + + + + L +E IL L N+G+ ++++ Sbjct: 123 REFEDDKYIIKIKDLELNLKEHTLYKGEGEITLTPKEFDILCLLARNKGRVFPSSELYER 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222 ++G + +N + +HI LR+KL + + + +GY I+ Sbjct: 183 VWGQ-EFLENDNSLLTHIRNLREKLNDTVKNSKYIKTVWGVGYKIEK 228 >gi|218233154|ref|YP_002369467.1| DNA-binding response regulator [Bacillus cereus B4264] gi|229048376|ref|ZP_04193944.1| hypothetical protein bcere0027_43440 [Bacillus cereus AH676] gi|229152869|ref|ZP_04281052.1| hypothetical protein bcere0011_44010 [Bacillus cereus m1550] gi|218161111|gb|ACK61103.1| DNA-binding response regulator [Bacillus cereus B4264] gi|228630689|gb|EEK87335.1| hypothetical protein bcere0011_44010 [Bacillus cereus m1550] gi|228723101|gb|EEL74478.1| hypothetical protein bcere0027_43440 [Bacillus cereus AH676] Length = 229 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 46/229 (20%), Positives = 88/229 (38%), Gaps = 11/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D + + + ++ +S E D+ ++ L Sbjct: 4 ILLIEDEVSIAELQRDYLEINDFQVDVEHSGEIGLQTALQEDYDLIILDIML--PKMNGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IRA +P++ +S + G DD + KP E++ARV A R + Sbjct: 62 EICKQIRAVKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121 Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + I + R + E +E +L + + + + + K Q+F Sbjct: 122 LLGNVSKQRDTLYIHGISIDQRARKVFINNEEVAFTTKEFDLLTFFVTHPNQVLNKEQLF 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 I+GL D A + V HI KLR+K+ + +++ GY + Sbjct: 182 ERIWGL-DSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRFNV 229 >gi|70725018|ref|YP_251932.1| response regulator VicR [Staphylococcus haemolyticus JCSC1435] gi|123776194|sp|Q4LAJ9|WALR_STAHJ RecName: Full=Transcriptional regulatory protein walR gi|68445742|dbj|BAE03326.1| response regulator, VicR [Staphylococcus haemolyticus JCSC1435] Length = 233 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 49/224 (21%), Positives = 93/224 (41%), Gaps = 12/224 (5%) Query: 4 LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63 ++DD + D +G + L D+ ++ L G +E+ Sbjct: 7 VVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIML--PGRDGMEV 64 Query: 64 PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123 R +R ++P+I ++ S + + G DD V KP RE++ARV A RR Sbjct: 65 CREVRKKFEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYSQP 124 Query: 124 --------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 N I ++ D + +GE L RE + YL + G+ + + + Sbjct: 125 AQEVSGTTNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHLLQ 184 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218 ++G +D + V+ I +LR+K+ + + + ++R +GY Sbjct: 185 TVWG-YDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGY 227 >gi|109897378|ref|YP_660633.1| two component transcriptional regulator [Pseudoalteromonas atlantica T6c] gi|332307706|ref|YP_004435557.1| two component transcriptional regulator PhoB, winged helix family [Glaciecola agarilytica 4H-3-7+YE-5] gi|109699659|gb|ABG39579.1| two component transcriptional regulator, winged helix family [Pseudoalteromonas atlantica T6c] gi|332175035|gb|AEE24289.1| two component transcriptional regulator PhoB, winged helix family [Glaciecola agarilytica 4H-3-7+YE-5] Length = 229 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 39/223 (17%), Positives = 87/223 (39%), Gaps = 8/223 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L++D A +++ + G + D+ ++ L G ++ Sbjct: 6 LLVEDEAPIREMLKFVLEQSGYETIEAEDFDVALEKVVEPYPDLILLDWML--PGGSGVQ 63 Query: 63 LPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYR 117 L + ++ H +P+I ++ + + DSG DD V KP +E+ + Sbjct: 64 LAKRLKQHEFTRDIPIIMVTARGEEEDKVRGLDSGADDYVTKPFSPKELVARIKAVIRRV 123 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 S+ E +++ E + E ++L + M++ + ++ Q+ + Sbjct: 124 TPTSSDELIEFNGLKLDPVSHRATANDEPLDMGPTEFKLLHFFMSHSERVYSREQLLDNV 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G + VE+ V+ HI +LRK + + + R GY Sbjct: 184 WGT-NVYVEDRTVDVHIRRLRKAISRFGHDSMIQTVRGSGYRF 225 >gi|330446710|ref|ZP_08310362.1| phosphate regulon transcriptional regulatory protein PhoB [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490901|dbj|GAA04859.1| phosphate regulon transcriptional regulatory protein PhoB [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 229 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 38/222 (17%), Positives = 91/222 (40%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D A +++ + G + ++ ++ L G G + Sbjct: 5 ILVVEDEAPIREMLCFVLEQKGYQAIEAEDYDTALEKMCEPYPELILMDWMLPGGSGINL 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ + Q+P++ ++ + + + G DD + KP +E++AR+ A+ RR+ Sbjct: 65 IKHLKRDELTRQIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELMARLKAVMRRVS 124 Query: 121 VSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + ++ E + E ++L + M ++ + ++ Q+ + ++ Sbjct: 125 PTALDDVIDVQGLKLDPVSHRVTSGDEPLDMGPTEFKMLHFFMTHQERVYSREQLLNNVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G + VE+ V+ HI +LRK L V + R GY Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALEAGGHDKLVQTVRGAGYRF 225 >gi|327392936|dbj|BAK10358.1| phosphate regulon transcriptional regulatory protein PhoB [Pantoea ananatis AJ13355] Length = 245 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 37/222 (16%), Positives = 90/222 (40%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D A +++ + + + D+ ++ L G G + Sbjct: 21 ILVVEDEAPIREMLCFVLEQNDYQPIEAEDYDSAVSKLIEPWPDLILLDWMLPGGSGIQF 80 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ + +P++ ++ + + + G DD + KP +E++AR+ A+ RR+ Sbjct: 81 IKHLKREAMTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELMARIKAVMRRIS 140 Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + E + + + + E ++L + M + + ++ Q+ + ++ Sbjct: 141 PMAVEDVIEMQGLSLDPSSHRVMSETTPLEMGPTEYKLLHFFMTHPERVYSREQLLNHVW 200 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G + VE+ V+ HI +LRK L V + R GY Sbjct: 201 GT-NVYVEDRTVDVHIRRLRKALELTGHDRMVQTVRGTGYRF 241 >gi|302333994|gb|ADL24187.1| two component transcriptional regulator, winged helix family [Staphylococcus aureus subsp. aureus JKD6159] Length = 224 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 49/220 (22%), Positives = 100/220 (45%), Gaps = 4/220 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + + + + S E L R D++ ++ G + Sbjct: 5 LVVDDDPRILNYIASHLQTEHIDAYTQPSGEAALKLLEKQRVDIAVVDIM--MDGMDGFQ 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L ++ +P+I ++ +L F SG DD V KP +E++ R+ A+ RR ++ Sbjct: 63 LCNTLKNDYDIPVIMLTARDALSDKERAFISGTDDYVTKPFEVKELIFRIRAVLRRYNIN 122 Query: 123 NNRAETGPIRVFSDGR-DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 +N +T + + +V + LP +E ++L L A + + QI I+G + Sbjct: 123 SNSEKTIGNLTLNQSYLELQVSNKTMTLPNKEFQLLFMLAARPKQIFTREQIIEKIWG-Y 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D +E V+ HI +LR++L+ +++ R GY ++ Sbjct: 182 DYEGDERTVDVHIKRLRQRLKKLNATLTIETVRGQGYKVE 221 >gi|217963310|ref|YP_002348988.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Listeria monocytogenes HCC23] gi|217332580|gb|ACK38374.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Listeria monocytogenes HCC23] gi|307572111|emb|CAR85290.1| DNA-binding response regulator [Listeria monocytogenes L99] Length = 225 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 41/223 (18%), Positives = 89/223 (39%), Gaps = 5/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +G + E + + + ++ I+ Sbjct: 4 ILVVDDDRHILKLVGHYLRAEGFRVLEAIDGIEAEKIVETEQVHLAVIDVM--MPNMDGF 61 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119 EL + +RA +P+I ++ +L F+ G DD V KP E++ R+ A+ R Sbjct: 62 ELCQKMRASFPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELVFRIRALLRRSN 121 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + S + G I + ++ + +P +E +L L + G+ + ++ I+ Sbjct: 122 QASEVKINIGNITIDQKSYGIKIGNQERMIPVKEFELLYQLASYPGRIFTREELIERIW- 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 D + V+ HI +LR + + + R +GY ++ Sbjct: 181 QRDYDGSDRTVDVHIKRLRDHFDEEKDGIRIVTVRGVGYKLEE 223 >gi|261406956|ref|YP_003243197.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261283419|gb|ACX65390.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] Length = 235 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 41/230 (17%), Positives = 83/230 (36%), Gaps = 14/230 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD ++D + + ++ + + L + D+ ++ L Sbjct: 4 ILVIDDEVAIRDLIELVLRRENYVVQTAENGKIALQLLDAFGPDLVVLDLML--PDCSGY 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILAR 111 +L + I VP+I +S + + + G +D + KP +R Sbjct: 62 DLCKEITGKRAVPVIMLSAKNEVIDKVLGLELGAEDYMTKPFDNRELLARIKVILRRNES 121 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 +V + R + + R G L +E +ILE L+ K + Sbjct: 122 KEESSEGTEVKSTRIIHEELTFDLESRRVLKNGVPVSLTAKEFKILESLLKRPDKIFTRD 181 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++ +G +D + V+ I +LRKKL + V + GY + Sbjct: 182 ELLQIGWG-YDFMGDSRSVDMTIMRLRKKLEDNADEPKYVRTIYGFGYQL 230 >gi|41406689|ref|NP_959525.1| PhoP [Mycobacterium avium subsp. paratuberculosis K-10] gi|41395039|gb|AAS02908.1| PhoP [Mycobacterium avium subsp. paratuberculosis K-10] Length = 239 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 51/224 (22%), Positives = 93/224 (41%), Gaps = 10/224 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD A + + G + + AR D ++ G Sbjct: 16 LVVDDEANIVELLSVSLKFQGFEVHTATNGAQALDRAREARPDAVILDVM--MPGMDGFG 73 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118 + R +RA P + ++ SLQ + G DD V KP E++AR+ I RR Sbjct: 74 VLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAGK 133 Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + R I + + + G+ L E +L Y + N G ++K +I Sbjct: 134 GGAEPRSARLTFADIELDEETHEVWKAGQPVSLSPNEFTLLRYFVINAGTVLSKPKILDH 193 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +D + NVVES++S LR+K+ + + + R +GY + Sbjct: 194 VW-RYDFGGDVNVVESYVSYLRRKI-DTGEKRLLHTLRGVGYVL 235 >gi|194436317|ref|ZP_03068419.1| DNA-binding response regulator BaeR [Escherichia coli 101-1] gi|194425045|gb|EDX41030.1| DNA-binding response regulator BaeR [Escherichia coli 101-1] gi|323972772|gb|EGB67971.1| response regulator receiver domain-containing protein [Escherichia coli TA007] Length = 240 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 44/224 (19%), Positives = 89/224 (39%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + I + + + D+ ++ L G L Sbjct: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLML--PGTDGL 70 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 L R IR S +P++ ++ L + G DD + KP RE++ARV + Sbjct: 71 TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + P+ + +G++ L E R+L+ L GK ++ Q+ + +Y Sbjct: 131 QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190 Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + V + ++SHI LR+KL + + + +GY + Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 >gi|328882803|emb|CCA56042.1| DNA-binding response regulator mtrA [Streptomyces venezuelae ATCC 10712] Length = 225 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 45/219 (20%), Positives = 90/219 (41%), Gaps = 5/219 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + + +G + A+ D+ ++ L G +E Sbjct: 6 LVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLML--PGRDGIE 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R+IRA S VP++ ++ + +SG DD + KP +E++AR+ A RR + Sbjct: 64 VCRLIRAESGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEEP 123 Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 T + G + G+ L E +L L + + + ++G + Sbjct: 124 APEQLTIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWG-Y 182 Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219 A + +V H+ +LR K+ + V + R +GY Sbjct: 183 RHAADTRLVNVHVQRLRSKVEKDPERPEIVVTVRGVGYK 221 >gi|315639590|ref|ZP_07894730.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus italicus DSM 15952] gi|315484551|gb|EFU75007.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Enterococcus italicus DSM 15952] Length = 235 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 43/230 (18%), Positives = 90/230 (39%), Gaps = 14/230 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +G + + + D ++ L + Sbjct: 4 ILVVDDEPSIVTLLTFNLEKEGYQVTSATDGQEALEIALMQSFDFILLDVML--PHMDGI 61 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ + +R +P+I ++ + + G DD ++KP RE++AR+ AI RR+ Sbjct: 62 EITKRLRQEKVNIPIIILTAKDDPIDRILGLEIGADDYLSKPFSPREVIARIKAIARRMS 121 Query: 121 VSNNRAETGPIRV---------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + + +V+GE L +E +L Y M + + + + Sbjct: 122 QNEVQPIDEEKEELVKIGSIEADLSNYQVKVKGEQIFLTPKEFELLVYFMKRKDRVIDRD 181 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 + I+ FD + +V+ HIS LR+K+ + + + R GY+ Sbjct: 182 TLLDRIW-HFDFDGQSRIVDVHISHLREKIEDDPKHPQYLQTVRGFGYTF 230 >gi|296283968|ref|ZP_06861966.1| phosphate regulon response regulator [Citromicrobium bathyomarinum JL354] Length = 229 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 54/224 (24%), Positives = 106/224 (47%), Gaps = 5/224 (2%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEK 59 + + ++D + + F ++G + + + S D+ ++ + G G + Sbjct: 6 LIL-VEDDPALAELLEFRFANEGYQVRVTADGDEALLMASEDVPDLIILDWMIEGTSGIE 64 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 V R + + VP+I ++ + + ++G DD + KP RE+LARVAA+ RR+ Sbjct: 65 VCRRLRRDKGTAHVPIIMLTAREAEDDRVRGLETGADDYLTKPFSPRELLARVAAVMRRI 124 Query: 120 KV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + E G IR+ E +G L E R+L++ M + G+ ++ Q+ + Sbjct: 125 RPALAGETIEVGDIRLDPVAHKVERRGRNLQLGPTEYRLLKFFMESPGRVFSRGQLLDGV 184 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +G +E V+ HI +LRK L + DP+ + R GY+++ Sbjct: 185 WGTG-SDIELRTVDVHIRRLRKALELEGASDPIRTVRSAGYALE 227 >gi|291007101|ref|ZP_06565074.1| two-component system, response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 241 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 45/224 (20%), Positives = 91/224 (40%), Gaps = 10/224 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + A G + G + S D+ ++ L + Sbjct: 12 LVVDDEPNILELLTAALRLSGFEVRGAATGADALRAASEFGPDIVVLDVML--PDQDGFS 69 Query: 63 LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-----ILARVAAIY 116 + R +R VP++ ++ +++ + +G DD V KP E Sbjct: 70 VARRLREGGDLVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLDEVVLRLRAILRRVRP 129 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 L ++R + + + + G L E ++L YLM N K V+++QI Sbjct: 130 AHLDEPDSRLRYHDLELDEEAYEVRRGGRPVALSPTEFKLLRYLMVNAEKVVSRSQILDR 189 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ ++ + VVES+IS LR+K+ + + + R +GY + Sbjct: 190 VW-NYEFGGDSRVVESYISYLRRKI-DSTAPPLIHTIRGVGYVL 231 >gi|254831076|ref|ZP_05235731.1| two-component response phosphate regulator [Listeria monocytogenes 10403S] gi|255025953|ref|ZP_05297939.1| two-component response phosphate regulator [Listeria monocytogenes FSL J2-003] gi|284802939|ref|YP_003414804.1| two-component response phosphate regulator [Listeria monocytogenes 08-5578] gi|284996080|ref|YP_003417848.1| two-component response phosphate regulator [Listeria monocytogenes 08-5923] gi|284058501|gb|ADB69442.1| two-component response phosphate regulator [Listeria monocytogenes 08-5578] gi|284061547|gb|ADB72486.1| two-component response phosphate regulator [Listeria monocytogenes 08-5923] Length = 236 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 47/233 (20%), Positives = 95/233 (40%), Gaps = 16/233 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A + G + L S + D+ ++ L + Sbjct: 4 ILVVDDEASIVTLLQFNIEKAGFEVVTAEDGRTGYELALSEKPDLIVLDLML--PEMDGI 61 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ + +R VP++ ++ + + G DD + KP RE++AR+ AI RR + Sbjct: 62 EVTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTE 121 Query: 121 VSNNRAETGPIR-----------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 E + D + +Q ++ L +E +L +L +RGK + Sbjct: 122 GKAEIIEELTEDVEAAILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFS 181 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 + Q+ ++ +D E +V+ H+S LR K+ + + + R GY ++ Sbjct: 182 RDQLLDTVW-NYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKME 233 >gi|238921581|ref|YP_002935096.1| hypothetical protein NT01EI_3734 [Edwardsiella ictaluri 93-146] gi|238871150|gb|ACR70861.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146] Length = 243 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 46/228 (20%), Positives = 89/228 (39%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D L+ + D+G + + L D ++ L G L Sbjct: 12 ILVVEDDTLIAELLTLHLCDEGYRVTHAADGDRGMALVEQGGWDALILDLML--PGVDGL 69 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ R +R P+I S S + + G DD + KP E++ARV A++RR + Sbjct: 70 DICRRVRTMTRYTPIIITSARSSEVHRVLGLELGADDYLAKPFSMIELVARVKALFRRQE 129 Query: 121 VSNNRAE-------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 G + + R V L RE +L + + G+ ++ Q+ Sbjct: 130 AMGRNLMLEGGRLSYGLLTIDPMARAVWVGERPIELTPREFDLLYFFARHPGQVFSRLQL 189 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++G + E+ V +HI++LR K+ + + + GY Sbjct: 190 LDKVWG-YQHDGYEHTVNTHINRLRTKIEADPAEPALILTVWGAGYRF 236 >gi|163941059|ref|YP_001645943.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163863256|gb|ABY44315.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] Length = 224 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 46/223 (20%), Positives = 93/223 (41%), Gaps = 6/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD A +++ +DG + + + S D+ ++ Sbjct: 4 ILVADDDANIRELVCLFLRNDGFATAEAADGKEALAVYISTNVDLVVLDIM--MPIMDGW 61 Query: 62 ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L + + RA+ +PL+ ++ + F+ G DD + KP E+ RV A+ +R K Sbjct: 62 TLSKELRRANPDLPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVRALLKRYK 121 Query: 121 VSNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + + + E LP +E +L L G+ + Q+ I+G Sbjct: 122 IGSTQTIHLGNVILDRQTYKVMKGTESLTLPLKEFELLYKLAGTPGQVYTRVQLIDQIWG 181 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + D A ++ V+ HI +LR++ F +++ R LGY ++ Sbjct: 182 I-DYAGDDRTVDVHIKRLRERFATTHDFR-IETVRGLGYRLEV 222 >gi|290892747|ref|ZP_06555739.1| DNA-binding response regulator [Listeria monocytogenes FSL J2-071] gi|290557807|gb|EFD91329.1| DNA-binding response regulator [Listeria monocytogenes FSL J2-071] Length = 225 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 41/223 (18%), Positives = 89/223 (39%), Gaps = 5/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +G + E + + + ++ I+ Sbjct: 4 ILVVDDDRHILKLVGHYLRAEGFRVLEAIDGIEAEKIVETEQVHLAVIDVM--MPNMDGF 61 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119 EL + +RA +P+I ++ +L F+ G DD V KP E++ R+ A+ R Sbjct: 62 ELCQKMRASFPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELVFRIRALLRRSN 121 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + S + G I + ++ + +P +E +L L + G+ + ++ I+ Sbjct: 122 QASEVKINIGNITIDQKSYGIKIGNQERMIPVKEFELLYQLASYPGRIFTREELIERIW- 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 D + V+ HI +LR + + + R +GY ++ Sbjct: 181 QRDYDGSDRTVDVHIKRLRDHFDEEKDGIRIVTVRGVGYKLEE 223 >gi|187777132|ref|ZP_02993605.1| hypothetical protein CLOSPO_00677 [Clostridium sporogenes ATCC 15579] gi|187774060|gb|EDU37862.1| hypothetical protein CLOSPO_00677 [Clostridium sporogenes ATCC 15579] Length = 225 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 44/224 (19%), Positives = 95/224 (42%), Gaps = 6/224 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD + + ++G ++ S QS D+ ++ L Sbjct: 5 ILVIDDEVKIIEVIKLYLENEGYTVIQATSGIEALKKQSEFNPDLLILDLML--PDISGE 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + IR S+VP+I ++ S + L+ + G DD + KP ++++A+V A+ +R+K Sbjct: 63 NVCERIREESEVPIIMLTAKSSEDSILNGYSIGSDDYITKPFSPKQLVAKVNAVLKRVKG 122 Query: 122 SNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + + + + E + L E +IL L N K ++ ++ I Sbjct: 123 NQCKNLIFNNELIIDIVNKKVEYNNKEIILTASEYKILSILAKNPNKIFSREELMDYI-S 181 Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 + + + ++++HI +R KL + + R +GY + Sbjct: 182 RDNTCIYDRIIDTHIKNIRAKLDQDSKSPTYIKTIRGMGYRFNV 225 >gi|329896463|ref|ZP_08271541.1| putative two-component response regulatory protein [gamma proteobacterium IMCC3088] gi|328921781|gb|EGG29153.1| putative two-component response regulatory protein [gamma proteobacterium IMCC3088] Length = 226 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 47/219 (21%), Positives = 89/219 (40%), Gaps = 3/219 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +I+D + G +S + L +S D+ ++ L Sbjct: 4 IAIIEDDPKIARLLADYLTQAGFDTATAHSGQEALSLATSQHFDLFLLDVML--PDGDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + +R S P++ ++ + + L + G DD + KP RE++ARV A RRL + Sbjct: 62 SVCKQLRLFSSAPILFLTARIAEEDRLLGLELGGDDYIVKPFSPREVVARVKANLRRLAL 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + ++ T +++ D + L E +L L A K + ++ IY Sbjct: 122 DSGQSPTSTLQLDQDTLTAQFGHRTTDLTAIECALLAALTAAPNKLFNRDELIDRIYS-D 180 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 V + ++SHI KLR+KL + +++ GY Sbjct: 181 GRVVSDRTIDSHIKKLRQKLSRIDQGEVIEAVYGAGYRF 219 >gi|323187842|gb|EFZ73139.1| transcriptional regulatory protein baeR [Escherichia coli RN587/1] Length = 240 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 44/224 (19%), Positives = 88/224 (39%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + I + + + D+ ++ L G L Sbjct: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLML--PGTDGL 70 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 L R IR S +P++ ++ L + G DD + KP RE++ARV + Sbjct: 71 TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + P+ + +G++ L E R+L+ L GK ++ Q+ + +Y Sbjct: 131 QRELQQQDAESPLMIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190 Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + V + ++SHI LR+KL + + +GY + Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLEALDEEQSFIRAVYGVGYRWE 233 >gi|256787359|ref|ZP_05525790.1| two-component system response regulator [Streptomyces lividans TK24] Length = 225 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 43/219 (19%), Positives = 88/219 (40%), Gaps = 5/219 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + + +G + + D+ ++ L G +E Sbjct: 6 LVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFRETKPDLVLLDLML--PGRDGIE 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R+IRA S VP++ ++ + +SG DD + KP +E++AR+ A RR + Sbjct: 64 VCRLIRAESGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEEP 123 Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + G + G+ L E +L L + + + ++G + Sbjct: 124 APEQLAIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWG-Y 182 Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219 A + +V H+ +LR K+ + V + R +GY Sbjct: 183 RHAADTRLVNVHVQRLRSKVEKDPEKPEIVVTVRGVGYK 221 >gi|210617002|ref|ZP_03291337.1| hypothetical protein CLONEX_03559 [Clostridium nexile DSM 1787] gi|210149525|gb|EEA80534.1| hypothetical protein CLONEX_03559 [Clostridium nexile DSM 1787] Length = 229 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 47/229 (20%), Positives = 87/229 (37%), Gaps = 10/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +D + F + E + + D++ ++ L Sbjct: 3 ILVVDDEKEIADVIALYLQNDEYQVHKFYTGEEALNCIETTKIDLALLDVML--PDIDGF 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IR P+I ++ + G DD + KP + E++ARV A RR Sbjct: 61 EILKRIREKYTFPVIMLTAKVDYMDKITGLTLGADDYIPKPFNPLELVARVKAQLRRYTQ 120 Query: 122 SNNRAETGPIRVFS-------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N+ + + + L E IL L NRGK ++ ++F Sbjct: 121 YNDGGKIEGDVIDFAGVLLNRTSHECIFNERSLTLTPIEFDILWLLCENRGKVISSEELF 180 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSIDW 222 ++ N V HI LR+K+ G D + + +GY ++ Sbjct: 181 RKVWKEEYYKNSNNTVMVHIRHLREKMSGPTGKSDFIKTVWGVGYKVEE 229 >gi|253698881|ref|YP_003020070.1| transcriptional regulator [Geobacter sp. M21] gi|251773731|gb|ACT16312.1| two component transcriptional regulator, winged helix family [Geobacter sp. M21] Length = 224 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 42/221 (19%), Positives = 90/221 (40%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D V ++ + E L D+ ++ L + L Sbjct: 3 ILVVEDEKKVASFIKRGLEEEQYEVHTAADGEEGLKLALEKPFDLIVLDWML--PKKDGL 60 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119 + + +R P++ ++ S++ + DSG DD + KP E+LARV A + R Sbjct: 61 SVLKELRERKNLTPILMLTAKDSVEDIVAGLDSGSDDYLTKPFAFAELLARVRALMRRSE 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +R+ + + L +E +LEY M N + + +T I ++ Sbjct: 121 LDRGAEIRFADLRLDPVTHKVWRKDKEIDLTAKEYGLLEYFMRNPHQVLTRTMIAEHVWD 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + N+++ +++ LRKK+ + + + R +GY + Sbjct: 181 -YTFDSFTNIIDVYVNYLRKKIDREADKKLIHTVRGVGYIL 220 >gi|72382276|ref|YP_291631.1| two component transcriptional regulator [Prochlorococcus marinus str. NATL2A] gi|72002126|gb|AAZ57928.1| two component transcriptional regulator, winged helix family [Prochlorococcus marinus str. NATL2A] Length = 245 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 42/233 (18%), Positives = 93/233 (39%), Gaps = 17/233 (7%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQ-----SSAREDVSAIEAFLIGK 56 ++++D +++ +G +E + + E + + D+ ++ L Sbjct: 15 LLIVEDDKSIRETLNEALVAEGYQVEACKTGDEAEARVFSQFDTRKKIDLIVLDLML--P 72 Query: 57 GEKVLELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREI 108 +EL R +R ++ P++ +S S + + G DD + KP R I Sbjct: 73 NLNGIELCRRVRKNNIKTPILIVSAKDSESDRVLGLEVGADDYLIKPFGLNELIARCRAI 132 Query: 109 LARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 L R + + + S+ I ++ + L +E +I+E + N + Sbjct: 133 LRRSETNHEKAQDSSQVLSYKNISLYRQEYRVTKNSKEINLAPKEYKIMELFLQNPKRVW 192 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220 ++ Q+ I+G+ D + V+ HI +R+K+ + D + + R GY Sbjct: 193 SRDQLLEQIWGI-DYVGDSKTVDVHIRWIREKIEDDASDPDYIRTVRGFGYKF 244 >gi|302544907|ref|ZP_07297249.1| DNA-binding response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302462525|gb|EFL25618.1| DNA-binding response regulator [Streptomyces himastatinicus ATCC 53653] Length = 225 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 45/219 (20%), Positives = 91/219 (41%), Gaps = 5/219 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + + +G + + A+ D+ ++ L G +E Sbjct: 6 LVVDDDTALAEMLGIVLRGEGFEPSFVSDGDKALAAFREAKPDLVLLDLML--PGRDGIE 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R+IRA S VP++ ++ + +SG DD + KP +E++AR+ A RR + Sbjct: 64 VCRLIRAESGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEDP 123 Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 T + G + G+ L E +L L + + + ++G + Sbjct: 124 TPEQLTIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWG-Y 182 Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219 A + +V H+ +LR K+ + V + R +GY Sbjct: 183 RHAADTRLVNVHVQRLRSKVEKDPERPEIVVTVRGVGYK 221 >gi|167761524|ref|ZP_02433651.1| hypothetical protein CLOSCI_03935 [Clostridium scindens ATCC 35704] gi|167661190|gb|EDS05320.1| hypothetical protein CLOSCI_03935 [Clostridium scindens ATCC 35704] Length = 224 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 47/225 (20%), Positives = 95/225 (42%), Gaps = 8/225 (3%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEK 59 M ++D + +++ + G+ GF + D+ ++ L G G + Sbjct: 1 MIFCVEDDSNIRELVVYTLESTGLKARGFEEGSSFLEALALETPDLVLLDIMLPGEDGME 60 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAI 115 +L+ + +P+I ++ + + D+G DD V KP E+++R+ Sbjct: 61 LLKKLKASPKTRDIPVIMVTAKGAEYDKVMGLDTGADDYVTKPFGMMELVSRIKAVLRRS 120 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 R + G I + + GEV L +E +L+ LM N + + Q+ Sbjct: 121 AREGVRKEDSIVIGEIEMNLKKHEVTAAGEVISLTLKEYELLKRLMKNSNIVLTRDQLLE 180 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I+G +D E V+ H+ LR+KL + + +++ R +GY + Sbjct: 181 DIWG-YDFDGETRTVDVHVRTLRQKLGSAG--ERIETVRGVGYRM 222 >gi|258611947|ref|ZP_05243319.2| DNA-binding response regulator PhoP [Listeria monocytogenes FSL R2-503] gi|300765000|ref|ZP_07074988.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL N1-017] gi|258607360|gb|EEW19968.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL R2-503] gi|300514300|gb|EFK41359.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL N1-017] Length = 240 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 47/233 (20%), Positives = 95/233 (40%), Gaps = 16/233 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A + G + L S + D+ ++ L + Sbjct: 8 ILVVDDEASIVTLLQFNIEKAGFGVVTAEDGRTGYELALSEKPDLIVLDLML--PEMDGI 65 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ + +R VP++ ++ + + G DD + KP RE++AR+ AI RR + Sbjct: 66 EVTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTE 125 Query: 121 VSNNRAETGPIR-----------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 E + D + +Q ++ L +E +L +L +RGK + Sbjct: 126 GKAEIIEEITEDSEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFS 185 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 + Q+ ++ +D E +V+ H+S LR K+ + + + R GY ++ Sbjct: 186 RDQLLDTVW-NYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKME 237 >gi|317498542|ref|ZP_07956836.1| response regulator receiver domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] gi|316894235|gb|EFV16423.1| response regulator receiver domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 226 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 49/222 (22%), Positives = 102/222 (45%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + ++ G + E S + ++ + ++ Sbjct: 6 ILVVDDESRMRKLVKDFLTRAGYQVLEAQDGEEAVDTFYSTK-GINLLVLDVMMPKMDGW 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120 E+ + IR S+VP+I ++ Q L F+ GVD+ ++KP + ++ARV AI R ++ Sbjct: 65 EVVKEIRKVSKVPIIMLTAKDQEQDELLGFELGVDEYISKPFSPKILVARVEAILRRTVQ 124 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + E G I + G + G+ L +E +L+Y M+N+G+ + + I + ++ Sbjct: 125 TEGEQIEAGGIVMDVGGHHVSIDGKSINLSYKEFELLQYFMSNQGRALTRESILNQVW-N 183 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D + +++H+ KLR KL K + + +GY + Sbjct: 184 YDYFGDARTIDTHVKKLRNKLGEKGS--YIHTIWGMGYKFEV 223 >gi|313673530|ref|YP_004051641.1| two component transcriptional regulator, winged helix family [Calditerrivibrio nitroreducens DSM 19672] gi|312940286|gb|ADR19478.1| two component transcriptional regulator, winged helix family [Calditerrivibrio nitroreducens DSM 19672] Length = 222 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 47/222 (21%), Positives = 101/222 (45%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++++D +++ G + + D+ ++ + G KG ++ Sbjct: 4 ILIVEDEDALRELIAFNLTKAGYDVIESENANDALIFIEEITPDLIILDIMMPGLKGTQL 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119 L+L + S +P+I IS S ++ + G DD + KP + ++A++ + ++ Sbjct: 64 LQLLKRSPKFSNIPVIIISARSSESDIVEGLELGADDYITKPFSMKVLIAKIKILLRKKQ 123 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + N E I V + + + L +E +L + + + K +++Q+ S I+G Sbjct: 124 EKTENIIEYKGIIVDLEKYKVFLNNKEITLTYKEFELLVFFLKHPKKVFSRSQLLSNIWG 183 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +D + V+SH+S LRKKL +K + S +GY +D Sbjct: 184 -YDADIFTRTVDSHVSSLRKKLEDKGN--LIKSLPKVGYLLD 222 >gi|291616506|ref|YP_003519248.1| PhoB [Pantoea ananatis LMG 20103] gi|291151536|gb|ADD76120.1| PhoB [Pantoea ananatis LMG 20103] Length = 245 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 37/222 (16%), Positives = 90/222 (40%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D A +++ + + + D+ ++ L G G + Sbjct: 21 ILVVEDEAPIREMLCFVLEQNDYQPIEAEDYDSAISKLIEPWPDLILLDWMLPGGSGIQF 80 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ + +P++ ++ + + + G DD + KP +E++AR+ A+ RR+ Sbjct: 81 IKHLKREAMTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELMARIKAVMRRIS 140 Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + E + + + + E ++L + M + + ++ Q+ + ++ Sbjct: 141 PMAVEDVIEMQGLSLDPSSHRVMSETTPLEMGPTEYKLLHFFMTHPERVYSREQLLNHVW 200 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G + VE+ V+ HI +LRK L V + R GY Sbjct: 201 GT-NVYVEDRTVDVHIRRLRKALELTGHDRMVQTVRGTGYRF 241 >gi|289450138|ref|YP_003475554.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184685|gb|ADC91110.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 236 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 39/229 (17%), Positives = 89/229 (38%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V D +G + S + D+ ++ L + Sbjct: 5 ILVVDDEINVVDLLKDNLEREGYHVITAFDGVTAYNSALSDKPDLILLDCML--PRMNGV 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARVAA 114 ++ + IR S VP+I I+ + + G DD + KP + L R+ Sbjct: 63 DVCKKIRQSSSVPIIMITAKSEEVDKVIGLELGADDYITKPFSVREVLARVKATLRRMGF 122 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + + ++ E G + + G V L RE ++ +L + G+ + Q+ Sbjct: 123 VDQEQAIISSTIEFGEFIIDLRSFELRRNGCVINLTLREFELISFLAQHPGEVFTREQLL 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL--GFDPVDSKRFLGYSID 221 ++G ++ + V+ + + R+K+ + + ++R +GY + Sbjct: 183 ERVWG-YEYYGDVRTVDVTVRRTREKIEGDTQNNYKYILTRRGVGYYFE 230 >gi|262040109|ref|ZP_06013362.1| DNA-binding response regulator [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259042462|gb|EEW43480.1| DNA-binding response regulator [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 240 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 48/224 (21%), Positives = 86/224 (38%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + I G + N + + ++ L G L Sbjct: 13 ILIVEDEPKLGQLLIDYLQAAGYAPALINHGDKVLPYVRQTPPHLILLDLML--PGTDGL 70 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R IR S VP++ ++ L + G DD + KP RE++ARV I RR K Sbjct: 71 TLCREIRRFSDVPVVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 Query: 122 SNNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + ++ L E R+L+ L GK ++ Q+ + +Y Sbjct: 131 QRDLQAMDAQSPLIVDEGRFQASWRDKLLDLTPAEFRLLKTLSQEPGKVFSREQLLNHLY 190 Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + V + ++SHI LR+KL + + +GY + Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLEALDAEQSFIRAVYGVGYRWE 233 >gi|16804539|ref|NP_466024.1| two-component response phosphate regulator [Listeria monocytogenes EGD-e] gi|224503258|ref|ZP_03671565.1| two-component response phosphate regulator [Listeria monocytogenes FSL R2-561] gi|254900361|ref|ZP_05260285.1| two-component response phosphate regulator [Listeria monocytogenes J0161] gi|16411989|emb|CAD00579.1| two-component response phosphate regulator [Listeria monocytogenes EGD-e] Length = 236 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 47/233 (20%), Positives = 95/233 (40%), Gaps = 16/233 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A + G + L S + D+ ++ L + Sbjct: 4 ILVVDDEASIVTLLQFNIEKAGFEVVTAEDGRTGYELALSEKPDLIVLDLML--PEMDGI 61 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ + +R VP++ ++ + + G DD + KP RE++AR+ AI RR + Sbjct: 62 EVTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTE 121 Query: 121 VSNNRAETGPIR-----------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 E + D + +Q ++ L +E +L +L +RGK + Sbjct: 122 GKAEIIEELTEDVEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFS 181 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 + Q+ ++ +D E +V+ H+S LR K+ + + + R GY ++ Sbjct: 182 RDQLLDTVW-NYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKME 233 >gi|302560333|ref|ZP_07312675.1| DNA-binding response regulator [Streptomyces griseoflavus Tu4000] gi|302477951|gb|EFL41044.1| DNA-binding response regulator [Streptomyces griseoflavus Tu4000] Length = 229 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 44/219 (20%), Positives = 90/219 (41%), Gaps = 5/219 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + + + +G + A+ D+ ++ L G +E Sbjct: 10 LVVDDDSALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLML--PGRDGIE 67 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R+IRA S VP++ ++ + +SG DD + KP +E++AR+ A RR + Sbjct: 68 VCRLIRAESGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEEP 127 Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + G + G+ L E +L L + + + ++G + Sbjct: 128 APEQLAIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWG-Y 186 Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219 A + +V H+ +LR K+ + V + R +GY Sbjct: 187 RHAADTRLVNVHVQRLRSKVEKDPEKPEIVVTVRGVGYK 225 >gi|138894005|ref|YP_001124458.1| transcriptional regulatory component of sensory transduction system [Geobacillus thermodenitrificans NG80-2] gi|196250325|ref|ZP_03149018.1| two component transcriptional regulator, winged helix family [Geobacillus sp. G11MC16] gi|134265518|gb|ABO65713.1| Transcriptional regulatory component of sensory transduction system [Geobacillus thermodenitrificans NG80-2] gi|196210214|gb|EDY04980.1| two component transcriptional regulator, winged helix family [Geobacillus sp. G11MC16] Length = 234 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 44/225 (19%), Positives = 93/225 (41%), Gaps = 6/225 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + G D+G + ++LE + L +S D+ ++ L Sbjct: 4 LLLVEDDESLALGIEFALQDEGYEVCRASTLEEGKALFASQSFDLIILDINL--PDGSGY 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI---HHREILARVAAIYRR 118 +L + IRA S VP++ ++ + + G DD + KP + + Sbjct: 62 DLCKHIRATSDVPILFLTALDEEVNIILGLELGGDDYITKPFGVGVFLSRIKALLRRSAG 121 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + ++G I V E G+ L +E ++L LM +++ +I + Sbjct: 122 HRATGMILKSGTITVDPLAATVEKNGQKISLSAQEYKLLLTLMDRPCTVMSRDEILRELA 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 + +EN + +I +LR+K+ + + ++R LGY + Sbjct: 182 EGTEAFFDENTLAVYIRRLREKIEDDPKEPQYIVTQRGLGYKWNK 226 >gi|190572351|ref|YP_001970196.1| putative two-component transcriptional regulator response regulatory protein [Stenotrophomonas maltophilia K279a] gi|194364007|ref|YP_002026617.1| winged helix family two component transcriptional regulator [Stenotrophomonas maltophilia R551-3] gi|254520920|ref|ZP_05132975.1| two-component system regulatory protein [Stenotrophomonas sp. SKA14] gi|99908241|gb|ABF68763.1| PhoP [Stenotrophomonas maltophilia] gi|190010273|emb|CAQ43881.1| putative two-component transcriptional regulator response regulatory protein [Stenotrophomonas maltophilia K279a] gi|194346811|gb|ACF49934.1| two component transcriptional regulator, winged helix family [Stenotrophomonas maltophilia R551-3] gi|219718511|gb|EED37036.1| two-component system regulatory protein [Stenotrophomonas sp. SKA14] Length = 227 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 60/221 (27%), Positives = 102/221 (46%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 +L++D A +++ A +G +++ E ++ DV I+ L G ++ Sbjct: 3 ILLVEDEAPLRETLAARLKREGFAVDAAQDGEEGLYMGREVPFDVGIIDLGLPKMSGMEL 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119 ++ R + P++ ++ S Q ++ G DD + KP H E+LARV A + R Sbjct: 63 IKALR--DEGKKFPVLILTARSSWQDKVEGLKQGADDYLVKPFHVEELLARVNALLRRAA 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S E GP+ + + V G L E ++LEYLM + G+ V+K + IY Sbjct: 121 GWSKPTLECGPVALDLAAQTVSVAGSNVDLTSYEYKVLEYLMMHAGELVSKADLTEHIY- 179 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D + NV+E I +LRKKL P+++ R GY Sbjct: 180 QQDFDRDSNVLEVFIGRLRKKLDPDGELKPIETVRGRGYRF 220 >gi|10281108|gb|AAG15433.1|AF189161_1 putative response regulator [Streptomyces coelicolor] Length = 228 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 43/219 (19%), Positives = 88/219 (40%), Gaps = 5/219 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + + +G + + D+ ++ L G +E Sbjct: 9 LVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFRETKPDLVLLDLML--PGRDGIE 66 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R+IRA S VP++ ++ + +SG DD + KP +E++AR+ A RR + Sbjct: 67 VCRLIRAESGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEEP 126 Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + G + G+ L E +L L + + + ++G + Sbjct: 127 APEQLAIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWG-Y 185 Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219 A + +V H+ +LR K+ + V + R +GY Sbjct: 186 RHAADTRLVNVHVQRLRSKVEKDPEKPEIVVTVRGVGYK 224 >gi|228935978|ref|ZP_04098788.1| hypothetical protein bthur0009_44230 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228823746|gb|EEM69568.1| hypothetical protein bthur0009_44230 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 229 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 47/229 (20%), Positives = 89/229 (38%), Gaps = 11/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D + + + ++ +S E + D+ ++ L Sbjct: 4 ILLIEDEVSIAELQRDYLEINDFQIDVEHSGETGLQMALQEDYDLIILDIML--PKMNGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IRA +P++ +S + G DD + KP E++ARV A R + Sbjct: 62 EICKQIRAIKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121 Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + I + R + E +E +L + + N + + K Q+F Sbjct: 122 LLGNVSKQRDTLYIHGISIDQRARKVFINNEEIAFTTKEFDLLTFFVTNPNQVLNKEQLF 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 I+GL D A + V HI KLR+K+ + +++ GY + Sbjct: 182 ERIWGL-DSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRFNV 229 >gi|193212865|ref|YP_001998818.1| two component transcriptional regulator, winged helix family [Chlorobaculum parvum NCIB 8327] gi|193086342|gb|ACF11618.1| two component transcriptional regulator, winged helix family [Chlorobaculum parvum NCIB 8327] Length = 227 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 45/220 (20%), Positives = 102/220 (46%), Gaps = 4/220 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + ++ +++ + L + D+ ++ + G + Sbjct: 3 LLIIEDEPGIAGFLKEGLEEEYFAVDVASDGRTGLDLAMTNEYDLLLVDWMI--PGISGI 60 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +R + VP+I ++ +++ + D+G +D + KP E+LAR+ RR Sbjct: 61 EVCRRLRKEGNDVPIIFLTAKDTIEDVVFGLDAGANDYIRKPFEFEELLARIRVQLRRRG 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 +++ TG + V + L +E +LE+L+ N+G+ +++I ++ + Sbjct: 121 SESSKLSTGELTVDPASHQARCESIDLALTPKEFALLEFLLRNKGRVCTRSRIIEHVWDM 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + +V++ +I+ LRKKL D + + R +GY I Sbjct: 181 H-FDSDTSVIDVYINFLRKKLDAAGCRDLIQTIRGVGYII 219 >gi|73661330|ref|YP_300111.1| response regulator [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|123761572|sp|Q4A160|WALR_STAS1 RecName: Full=Transcriptional regulatory protein walR gi|72493845|dbj|BAE17166.1| response regulator [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 233 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 48/224 (21%), Positives = 93/224 (41%), Gaps = 12/224 (5%) Query: 4 LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63 ++DD + D +G + L D+ ++ L G +E+ Sbjct: 7 VVDDEKPIADILEFNLKKEGYEVFCAYDGNDAVDLIYDEEPDIVLLDIML--PGRDGMEV 64 Query: 64 PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123 R +R ++P+I ++ S + + G DD V KP RE++ARV A RR Sbjct: 65 CREVRKKYEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYSQP 124 Query: 124 --------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 N I ++ D + +G+ L RE + YL + G+ + + + Sbjct: 125 AQEVNDASNEITIKDIVIYPDAYSIKKRGDDIELTHREFELFHYLSKHMGQVMTREHLLQ 184 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218 ++G +D + V+ I +LR+K+ + + + ++R +GY Sbjct: 185 TVWG-YDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGY 227 >gi|153939281|ref|YP_001392698.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|152935177|gb|ABS40675.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|295320679|gb|ADG01057.1| DNA-binding response regulator [Clostridium botulinum F str. 230613] Length = 230 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 43/227 (18%), Positives = 92/227 (40%), Gaps = 9/227 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + +G ++ + E + + D+ ++ Sbjct: 5 ILIVDDDKTIVEFLQIFLIKEGYEVKFSYNGEEALNKIENEKFDLILMDIM--MPKIDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E + IR + +P+I ++ + Q + F SG DD + KP E+ R++AI +R+ Sbjct: 63 EAIKRIRRLTNIPIIFLTAKDNQQDKIKGFISGCDDYITKPFDLVELSLRMSAILKRVST 122 Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 I+V + L +E IL L N+G+ ++++ Sbjct: 123 GVVEENEDLIKVKDLELNLKEHTLYKGEDEITLTPKEFNILCLLARNKGRVFPSSELYER 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222 ++G + +N + +HI LR+KL + + + +GY I+ Sbjct: 183 VWGQ-EFLENDNSLLTHIRNLREKLNDTVKNSKYIKTVWGVGYKIEK 228 >gi|66731635|gb|AAY52002.1| VanR [Paenibacillus thiaminolyticus] Length = 231 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 44/229 (19%), Positives = 90/229 (39%), Gaps = 10/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D ++ ++ + + + D++ ++ L G L Sbjct: 5 ILVVDDEHEIADLVELYLKNENYTVFKYYTAKEALECIDKTDLDLAILDIML--PGASGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 + + IR P+I ++ + + G DD + K E++ARV A RR Sbjct: 63 AICQKIRDKHTYPIIMLTAKDTEVDKITGLTIGADDYITKSFRPLELIARVKAQLRRYKK 122 Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + N + + + + + + L E IL L N+G V+ Q+F Sbjct: 123 YSGVAEQNENVIVHSGLVININTHECFLNEKQLSLTPTEFSILRILCENKGNVVSSEQLF 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDW 222 I+G + N + HI LR+K+ + + + +GY I+ Sbjct: 183 HEIWGDEYFSKSNNTITVHIRHLREKMNDTIDNPKYIKTVWGVGYKIEK 231 >gi|531494|emb|CAA56927.1| phoB [Shigella flexneri] Length = 229 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 38/224 (16%), Positives = 92/224 (41%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A +++ + +G + + D+ ++ L G + Sbjct: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWML--PGGSGI 62 Query: 62 ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 + + ++ S +P++ ++ + + ++G DD + KP +E++AR+ A+ RR Sbjct: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + + + E + E ++L + M + ++ Q+ + Sbjct: 123 ISPMAVEEVIKMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPELVYSREQLLNH 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + VE+ V+ HI +LRK L V + R GY Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225 >gi|238786434|ref|ZP_04630353.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia bercovieri ATCC 43970] gi|238712660|gb|EEQ04753.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia bercovieri ATCC 43970] Length = 239 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 38/224 (16%), Positives = 91/224 (40%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A +++ + +G + S D+ ++ L G + Sbjct: 15 ILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRLSEPFPDLVLLDWML--PGGSGI 72 Query: 62 ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 + + ++ +P++ ++ + + + G DD + KP +E++AR+ A+ RR Sbjct: 73 QFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRR 132 Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + E + + + + E ++L + M + + ++ Q+ + Sbjct: 133 ISPMAVEEVIEMQGLSLDPSSHRVMANEQALDMGPTEFKLLHFFMTHPERVYSREQLLNY 192 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + VE+ V+ HI +LRK L V + R GY Sbjct: 193 VWGT-NVYVEDRTVDVHIRRLRKALEVDGHDRMVQTVRGTGYRF 235 >gi|312141823|ref|YP_004009159.1| two component system response regulator [Rhodococcus equi 103S] gi|325672915|ref|ZP_08152609.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707] gi|311891162|emb|CBH50481.1| putative two component system response regulator [Rhodococcus equi 103S] gi|325556168|gb|EGD25836.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707] Length = 230 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 50/222 (22%), Positives = 88/222 (39%), Gaps = 7/222 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +LI+D ++D G + S E + D+ ++ L G E Sbjct: 8 LLIEDDDNLRDALSLALHRYGHVVTAAASGEAGLAALADGAPDIVVLDVML--PGVDGFE 65 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IRA S VP+I ++ + ++G DD V KP+ R + AR+ A+ RR + Sbjct: 66 VCRRIRARSGVPVIMLTARGEDVDVVSGLETGADDYVVKPVQPRILDARIKAVLRRTPTA 125 Query: 123 NNRAETGPI---RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + D L R E ++L L G+ +++ Q+ ++G Sbjct: 126 PTVDGREVHGDLVIDRDALTLTEGARRPELTRTEWQLLLALSERPGQVLSREQLLEKVWG 185 Query: 180 LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 FD +V++ + +LR K+ V + R GY Sbjct: 186 -FDHLGGSRLVDACVQRLRAKIEKEPSNPRYVQTVRGFGYRF 226 >gi|271499555|ref|YP_003332580.1| winged helix family two component transcriptional regulator [Dickeya dadantii Ech586] gi|270343110|gb|ACZ75875.1| two component transcriptional regulator, winged helix family [Dickeya dadantii Ech586] Length = 229 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 37/224 (16%), Positives = 91/224 (40%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A +++ + +G + + ++ ++ L G L Sbjct: 5 ILVVEDEAPIREMVCFVLEQNGYQPVEAEDYDSAVNRLAEPYPELVLLDWML--PGGSGL 62 Query: 62 ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 + + ++ +P++ ++ + + + G DD + KP +E++AR+ A+ RR Sbjct: 63 QFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRR 122 Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + E + + + + E ++L + M + + ++ Q+ + Sbjct: 123 ISPMAVEEVIEMRGLSLDPSSHRVTTEEHALDMGPTEFKLLHFFMTHPERVYSREQLLNH 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + VE+ V+ HI +LRK L V + R GY Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALETSGHDKMVQTVRGTGYRF 225 >gi|168818174|ref|ZP_02830174.1| response regulator [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205344977|gb|EDZ31741.1| response regulator [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320086566|emb|CBY96337.1| probable transcriptional regulator ycf27 OmpR-like protein [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 240 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 42/224 (18%), Positives = 84/224 (37%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + I + N + D+ ++ L G L Sbjct: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLINHGDKVLPYVRQTPPDLILLDLML--PGTDGL 70 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118 L R IR S +P++ ++ L + G DD + KP RE + + + Sbjct: 71 TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + P+ + G+ L E R+L+ L GK ++ Q+ + +Y Sbjct: 131 QRELQQQDAESPLMIDESRFQASWCGKALDLTPAEFRLLKTLSLEPGKVFSREQLLNHLY 190 Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + V + ++SHI LR+KL + + + +GY + Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 >gi|332652704|ref|ZP_08418449.1| regulatory protein VanR [Ruminococcaceae bacterium D16] gi|332517850|gb|EGJ47453.1| regulatory protein VanR [Ruminococcaceae bacterium D16] Length = 238 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 50/231 (21%), Positives = 91/231 (39%), Gaps = 14/231 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A + D ++G ++ F + R D++ ++ L Sbjct: 11 IMIVDDEAAIADLVDVYLKNEGYTVHKFYTATQALECVEQKRLDLAILDVML--PDMDGF 68 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L + IR P++ ++ + G DD + KP + E++ARV RR Sbjct: 69 TLCQKIRESHLFPILMLTAKVEDMDKITGLTLGADDYITKPFNPLELVARVKTQLRRYTR 128 Query: 122 SNNRAETGPIRVFSD----------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 N + G + E L E IL YL + +G+ V+ Sbjct: 129 YNPSSGCGEEVPQEYDIRGLQISKANHKCFLFEEELSLTPLEFSILWYLCSRQGQVVSSE 188 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221 ++F A +G N V SHI++LR+K+ N + + +GY+I+ Sbjct: 189 ELFEAAWGEK-FMDSNNTVMSHIARLREKMHENSRKPKFIKTVWGVGYTIE 238 >gi|325282397|ref|YP_004254938.1| two component transcriptional regulator, winged helix family [Deinococcus proteolyticus MRP] gi|324314206|gb|ADY25321.1| two component transcriptional regulator, winged helix family [Deinococcus proteolyticus MRP] Length = 222 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 45/219 (20%), Positives = 89/219 (40%), Gaps = 4/219 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + G L D+ ++ L Sbjct: 5 ILVIEDNPDISRVVQYELEQAGYEALTAPDGISGLTLAREEHPDLVILDLGL--PDLDGA 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R +S +P+I ++ +L + ++G DD + KP + E++ARV R + Sbjct: 63 EVTRRLRKNSSMPIIILTAMDALDRKVALLEAGADDYMTKPFYPEELVARVKVQLRHQQH 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + R +G L RE +L +L G+ ++ +I ++ Sbjct: 123 GDVIRVGDLEIH-PQKRLCYFKGHEVRLSPREFDLLTFLARQPGRVYSRAEIEREVWS-G 180 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D NVV+ H++ +R KLR+ G+ + + R +GY++ Sbjct: 181 DLPSNSNVVDVHMANMRSKLRDLDGYGLIRTVRGIGYAL 219 >gi|228999603|ref|ZP_04159180.1| Two-component response regulator [Bacillus mycoides Rock3-17] gi|229007150|ref|ZP_04164773.1| Two-component response regulator [Bacillus mycoides Rock1-4] gi|228754098|gb|EEM03520.1| Two-component response regulator [Bacillus mycoides Rock1-4] gi|228760129|gb|EEM09098.1| Two-component response regulator [Bacillus mycoides Rock3-17] Length = 229 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 51/229 (22%), Positives = 91/229 (39%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++++ F ++ + + L + ++ L Sbjct: 5 ILIVEDEDILREILKDYFLNEQYKVLEARDGKEALSLFEEEEVHLVILDIML--PELDGW 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR-------EILARVAA 114 + R IR SQVP+I ++ TL F+ G DD V KP +L Sbjct: 63 SVCRRIRKTSQVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRIL 122 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + ++ I V R ++G L E IL Y M N+G + + Q+ Sbjct: 123 TSKSPSNEDDTLSIHGICVHFPSRIVTIEGVDINLTHTEFEILTYFMQNQGIVLTREQLI 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 S I+G ++ A ++ V SHI LR KL +K + + +GY + N Sbjct: 183 SRIWG-YEFAGDDRTVNSHIRNLRNKLGDK--AKYITTVVRMGYKFEGN 228 >gi|149365314|ref|ZP_01887349.1| two-component system response regulator [Yersinia pestis CA88-4125] gi|167469861|ref|ZP_02334565.1| DNA-binding response regulator in two-component regulatory system with BaeS [Yersinia pestis FV-1] gi|218929914|ref|YP_002347789.1| DNA-binding transcriptional regulator BaeR [Yersinia pestis CO92] gi|115348525|emb|CAL21464.1| two-component system response regulator [Yersinia pestis CO92] gi|149291727|gb|EDM41801.1| two-component system response regulator [Yersinia pestis CA88-4125] Length = 239 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 43/221 (19%), Positives = 86/221 (38%), Gaps = 5/221 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + + G + + + ++ L G + Sbjct: 15 LIVEDEPKLGQLLVDYLQAAGYRTQWLTNGAEVVATVRQTPPAIILLDLML--PGSDGIT 72 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R IR S +P++ ++ L + G DD + KP RE++ARV I RR Sbjct: 73 LCREIRRFSDIPIVMVTAKTEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCSQQ 132 Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 ++ + QG + L E R+L+ L + G ++ Q+ + +Y + Sbjct: 133 RHQPTDDAPLLINESRFQASYQGHMLELTPAEFRLLKILASQPGHVFSREQLLNNLYDDY 192 Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 V + ++SHI L++KL + + +GY + Sbjct: 193 -RVVTDRTIDSHIKNLQRKLELLDGEKPFIRAVYGMGYRWE 232 >gi|319794725|ref|YP_004156365.1| two component heavy metal response transcriptional regulator winged helix family [Variovorax paradoxus EPS] gi|315597188|gb|ADU38254.1| two component heavy metal response transcriptional regulator, winged helix family [Variovorax paradoxus EPS] Length = 225 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 42/221 (19%), Positives = 91/221 (41%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + D ++G ++ +L + + ++ L G Sbjct: 3 ILVIEDEPKLGDYLKKGLEENGYVVDIARDGIEGRYLATEGEYALVLLDVML--PGIDGF 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120 + + IR VP++ ++ ++ + G DD + KP E+LARV A + R Sbjct: 61 TVLQAIRRTKNVPVLVLTARDKVEDRVQGLQQGADDYLVKPFSFSELLARVQALLRRGKA 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + + R L +E +L L+ RG+ +++T + ++ + Sbjct: 121 QDSTVLRLADLELDMASRKVFRNRVRLDLTAKEFTLLVVLLRRRGQILSRTTLAEQVWDM 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + NVVE I +LR K+ + + + R +GY ++ Sbjct: 181 -NFDSDTNVVEVAIRRLRSKIDDPFEVKLLHTVRGMGYVLE 220 >gi|302335808|ref|YP_003801015.1| two component transcriptional regulator, winged helix family [Olsenella uli DSM 7084] gi|301319648|gb|ADK68135.1| two component transcriptional regulator, winged helix family [Olsenella uli DSM 7084] Length = 231 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 50/218 (22%), Positives = 82/218 (37%), Gaps = 3/218 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + D L G +G+ + + E + + ++ G E Sbjct: 6 LVVDDSREIADLVTTLLGAEGIHADACHDGESALERFAERGYGLVILDIM--MPGLDGWE 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR S VP++ +S + F DD + KP E++ARV A RR Sbjct: 64 VCRRIRRTSAVPVLFLSAKSEEMDVVRGFSLDADDYITKPFKPFELIARVKARLRRAARP 123 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 + I + + L +E ILE L+ N G+ V I+ ++ Sbjct: 124 DGILCAQGIALEPLTHRATLHDLELSLTPKEFGILELLLRNAGRPVPNRMIYEEVWRDAY 183 Query: 183 EAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYS 219 N V HI LR KL P+ + +GY Sbjct: 184 LPSANNTVMVHIRNLRHKLAGIDSSAHPIQTVWGVGYR 221 >gi|297572194|ref|YP_003697968.1| two component transcriptional regulator, winged helix family [Arcanobacterium haemolyticum DSM 20595] gi|296932541|gb|ADH93349.1| two component transcriptional regulator, winged helix family [Arcanobacterium haemolyticum DSM 20595] Length = 229 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 51/224 (22%), Positives = 90/224 (40%), Gaps = 11/224 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD A +D DG + ++ + A DV ++ L + Sbjct: 6 LIVDDEATFRDVLRFNLNRDGYDVLTASNGVQALDVYKKA--DVILLDLML--PEMSGED 61 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-----ILARVAAIYR 117 + R IR HS VP+I ++ S + + G DD V KP +RE Sbjct: 62 VCRKIRQHSSVPIIMVTAKESEIDKVVGLEIGADDYVTKPYSYRELVARIRAILRRTGAE 121 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 G + + V + +P RE +LEYLM N G+ V + QI I Sbjct: 122 PATEEPQPITIGRVTIDPVAHVVYVDHQPISMPLREYELLEYLMENAGRVVTRGQILDRI 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 +G+ + ++ H+ ++R K+ + + + + R +GY I Sbjct: 182 WGIG-YVGDSKTLDVHVKRIRSKIEKDPVNPSLLVTVRGVGYKI 224 >gi|262275301|ref|ZP_06053111.1| probable two-component response regulator protein [Grimontia hollisae CIP 101886] gi|262220546|gb|EEY71861.1| probable two-component response regulator protein [Grimontia hollisae CIP 101886] Length = 231 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 51/224 (22%), Positives = 100/224 (44%), Gaps = 8/224 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L++D + + G +E ++ + L + DV+ ++ L G L Sbjct: 4 LLVEDDVSLSSFVEKGLREAGHQVEVTDNGKHALTLCMAENYDVAIVDRML--PGLDGLS 61 Query: 63 LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L + +RA P++ ++ + ++ ++G DD + KP E+LARV A+ RR + Sbjct: 62 LVKALRAAQVGTPILFLTALGGVDDRVEGLEAGGDDYLTKPFAFSELLARVTALSRRAVL 121 Query: 122 SNNRAETGPIRVFS----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 A +G+ L +E RILE + + G+ + +T + + Sbjct: 122 KTTEAMPEISYGDVVLNLFEHSATRRGQPLDLQPKEFRILELFLRHPGRVITRTMLLEHV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + + +VVE+HIS+LR KL G + + R +GY ++ Sbjct: 182 WDIH-FDPQTSVVETHISRLRNKLEKPFGDTLIQTVRGVGYKLE 224 >gi|229080389|ref|ZP_04212913.1| Response regulator [Bacillus cereus Rock4-2] gi|228702951|gb|EEL55413.1| Response regulator [Bacillus cereus Rock4-2] Length = 240 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 38/225 (16%), Positives = 89/225 (39%), Gaps = 8/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +++DD + + A+ +G + + E + + D+ ++ ++ Sbjct: 13 ILIVDDEKEILNLLEAVLKKEGFQHIYTCTTGEEGIRMCKQVQPDLIILD--IMLPDLDG 70 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR---EILARVAAIYR 117 + + IR + VP+ +S + G DD + KP + + + Sbjct: 71 YSVCQQIRQFTFVPIFFLSAKNEDLDKILGLSIGGDDYITKPFSPKEVAYKMKAFFRRNQ 130 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + + G I + + L +E IL +L+ N + +KT+++ A+ Sbjct: 131 YQEKARIMYQFGDITIDDAQGTVLKGDTLLSLTAKEFNILLFLIKNPNQIFSKTRLYEAV 190 Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 +G +N++ HI LR+K+ + + + R LGY ++ Sbjct: 191 WGET-YLGNDNIMMVHIRHLREKIEDNPSKPHYLVTVRGLGYKLN 234 >gi|169827847|ref|YP_001698005.1| DNA-binding response regulator [Lysinibacillus sphaericus C3-41] gi|168992335|gb|ACA39875.1| DNA-binding response regulator [Lysinibacillus sphaericus C3-41] Length = 228 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 39/228 (17%), Positives = 89/228 (39%), Gaps = 10/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D + + + ++ + + D+ ++ L G Sbjct: 4 ILLIEDEVSIAELQRDYLEINDYVVDIQHHGDEGLKQALHGDYDLIILDIML--PGMNGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115 E+ + IRA + +P++ +S + G DD + KP E+ Sbjct: 62 EICKQIRAVNNIPILFVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + +NN + + + R V GE +E +L + + + + ++K Q++ Sbjct: 122 LASNQPTNNMMSIHGLTIDTSARKVFVNGEEVAFTTKEFDLLVFFVKHPNQVLSKEQLYE 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 +G ++ A + + V HI KLR+K+ + +++ GY ++ Sbjct: 182 RNWG-YESAADVSTVTVHIRKLREKIERDPAQPKFLETVWGAGYRLNV 228 >gi|125974109|ref|YP_001038019.1| two component transcriptional regulator [Clostridium thermocellum ATCC 27405] gi|125714334|gb|ABN52826.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum ATCC 27405] Length = 224 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 46/225 (20%), Positives = 95/225 (42%), Gaps = 10/225 (4%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 M ++D +++ I +G GF+ E + D+ ++ L GE Sbjct: 1 MIYCVEDDRSIRELIIYALKSNGYEAVGFDKAEPFYKELENKLPDLVLLDIML--PGEDG 58 Query: 61 LELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAI 115 +E+ + ++A +P+I ++ + + DSG DD + KP E + Sbjct: 59 IEILKKLKASPKLRNIPVIMLTAKSAEYDKVLGLDSGADDYITKPFGIMEFLSRVKAVLR 118 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 +++ G + ++ D G+ L +E +L+YLM N G + + ++ Sbjct: 119 RSGNVSNSSEISVGQLTMYIDKHVVIADGKEVALTFKEFELLKYLMENAGIVLTRDKLLE 178 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G ++ E ++ HI LR+KL +++ R +GY I Sbjct: 179 EVWG-YEYEGETRTLDVHIRTLRQKLGEAGA--IIETVRGVGYKI 220 >gi|15925351|ref|NP_372885.1| two component response regulator [Staphylococcus aureus subsp. aureus Mu50] gi|15927941|ref|NP_375474.1| hypothetical protein SA2151 [Staphylococcus aureus subsp. aureus N315] gi|21284011|ref|NP_647099.1| hypothetical protein MW2282 [Staphylococcus aureus subsp. aureus MW2] gi|49487144|ref|YP_044365.1| response regulator protein [Staphylococcus aureus subsp. aureus MSSA476] gi|87161981|ref|YP_494943.1| response regulator protein [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88196283|ref|YP_501105.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148268798|ref|YP_001247741.1| two component transcriptional regulator [Staphylococcus aureus subsp. aureus JH9] gi|150394868|ref|YP_001317543.1| response regulator receiver [Staphylococcus aureus subsp. aureus JH1] gi|156980676|ref|YP_001442935.1| hypothetical protein SAHV_2345 [Staphylococcus aureus subsp. aureus Mu3] gi|161510555|ref|YP_001576214.1| hemin DNA-binding response regulator [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221142609|ref|ZP_03567102.1| hemin DNA-binding response regulator [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253314701|ref|ZP_04837914.1| response regulator protein [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255007137|ref|ZP_05145738.2| response regulator protein [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257794703|ref|ZP_05643682.1| response regulator receiver [Staphylococcus aureus A9781] gi|258407383|ref|ZP_05680526.1| two-component system response regulator receiver [Staphylococcus aureus A9763] gi|258422289|ref|ZP_05685201.1| response regulator protein [Staphylococcus aureus A9719] gi|258439681|ref|ZP_05690427.1| two component response regulator [Staphylococcus aureus A9299] gi|258442762|ref|ZP_05691322.1| heme response regulator hssR [Staphylococcus aureus A8115] gi|258446538|ref|ZP_05694693.1| two component response regulator [Staphylococcus aureus A6300] gi|258450345|ref|ZP_05698437.1| two component transcriptional regulator [Staphylococcus aureus A6224] gi|258451333|ref|ZP_05699366.1| response regulator receiver [Staphylococcus aureus A5948] gi|258455279|ref|ZP_05703239.1| two component transcriptional regulator [Staphylococcus aureus A5937] gi|262048779|ref|ZP_06021660.1| hypothetical protein SAD30_0626 [Staphylococcus aureus D30] gi|262051514|ref|ZP_06023735.1| hypothetical protein SA930_1282 [Staphylococcus aureus 930918-3] gi|269203993|ref|YP_003283262.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus ED98] gi|282893807|ref|ZP_06302039.1| heme response regulator hssR [Staphylococcus aureus A8117] gi|282917713|ref|ZP_06325464.1| two-component response regulator colocalized with HrtAB transporter [Staphylococcus aureus subsp. aureus D139] gi|282920347|ref|ZP_06328070.1| two-component system, OmpR family, response regulator [Staphylococcus aureus A9765] gi|282926915|ref|ZP_06334542.1| two-component system, OmpR family, response regulator [Staphylococcus aureus A10102] gi|283767450|ref|ZP_06340365.1| two-component system OmpR family response regulator [Staphylococcus aureus subsp. aureus H19] gi|284025384|ref|ZP_06379782.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus 132] gi|294848904|ref|ZP_06789649.1| two-component system [Staphylococcus aureus A9754] gi|295405048|ref|ZP_06814861.1| two-component system [Staphylococcus aureus A8819] gi|296275447|ref|ZP_06857954.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus MR1] gi|297244105|ref|ZP_06927995.1| two-component system [Staphylococcus aureus A8796] gi|81696274|sp|Q6G6V9|HSSR_STAAS RecName: Full=Heme response regulator hssR gi|81704182|sp|Q7A039|HSSR_STAAW RecName: Full=Heme response regulator hssR gi|81705166|sp|Q7A3X1|HSSR_STAAN RecName: Full=Heme response regulator hssR gi|81781023|sp|Q99RR6|HSSR_STAAM RecName: Full=Heme response regulator hssR gi|122538783|sp|Q2FVQ9|HSSR_STAA8 RecName: Full=Heme response regulator hssR gi|123484649|sp|Q2FED5|HSSR_STAA3 RecName: Full=Heme response regulator hssR gi|187609569|sp|A7X5Y5|HSSR_STAA1 RecName: Full=Heme response regulator hssR gi|187609570|sp|A6U488|HSSR_STAA2 RecName: Full=Heme response regulator hssR gi|187609571|sp|A5IVE2|HSSR_STAA9 RecName: Full=Heme response regulator hssR gi|187609573|sp|A8Z552|HSSR_STAAT RecName: Full=Heme response regulator hssR gi|13702312|dbj|BAB43453.1| SA2151 [Staphylococcus aureus subsp. aureus N315] gi|14248135|dbj|BAB58523.1| similar to two component response regulator [Staphylococcus aureus subsp. aureus Mu50] gi|21205454|dbj|BAB96147.1| MW2282 [Staphylococcus aureus subsp. aureus MW2] gi|49245587|emb|CAG44065.1| response regulator protein [Staphylococcus aureus subsp. aureus MSSA476] gi|87127955|gb|ABD22469.1| response regulator protein [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87203841|gb|ABD31651.1| DNA-binding response regulator, putative [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147741867|gb|ABQ50165.1| two component transcriptional regulator, winged helix family [Staphylococcus aureus subsp. aureus JH9] gi|149947320|gb|ABR53256.1| response regulator receiver [Staphylococcus aureus subsp. aureus JH1] gi|156722811|dbj|BAF79228.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3] gi|160369364|gb|ABX30335.1| hemin DNA-binding response regulator [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|257788675|gb|EEV27015.1| response regulator receiver [Staphylococcus aureus A9781] gi|257840895|gb|EEV65346.1| two-component system response regulator receiver [Staphylococcus aureus A9763] gi|257841720|gb|EEV66157.1| response regulator protein [Staphylococcus aureus A9719] gi|257847457|gb|EEV71459.1| two component response regulator [Staphylococcus aureus A9299] gi|257851883|gb|EEV75817.1| heme response regulator hssR [Staphylococcus aureus A8115] gi|257854606|gb|EEV77554.1| two component response regulator [Staphylococcus aureus A6300] gi|257856437|gb|EEV79346.1| two component transcriptional regulator [Staphylococcus aureus A6224] gi|257861125|gb|EEV83940.1| response regulator receiver [Staphylococcus aureus A5948] gi|257862490|gb|EEV85258.1| two component transcriptional regulator [Staphylococcus aureus A5937] gi|259160498|gb|EEW45521.1| hypothetical protein SA930_1282 [Staphylococcus aureus 930918-3] gi|259163037|gb|EEW47598.1| hypothetical protein SAD30_0626 [Staphylococcus aureus D30] gi|262076283|gb|ACY12256.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus ED98] gi|269941947|emb|CBI50358.1| heme response regulator HssR [Staphylococcus aureus subsp. aureus TW20] gi|282318468|gb|EFB48827.1| two-component response regulator colocalized with HrtAB transporter [Staphylococcus aureus subsp. aureus D139] gi|282591366|gb|EFB96439.1| two-component system, OmpR family, response regulator [Staphylococcus aureus A10102] gi|282594293|gb|EFB99279.1| two-component system, OmpR family, response regulator [Staphylococcus aureus A9765] gi|282763865|gb|EFC03993.1| heme response regulator hssR [Staphylococcus aureus A8117] gi|283461329|gb|EFC08413.1| two-component system OmpR family response regulator [Staphylococcus aureus subsp. aureus H19] gi|285818024|gb|ADC38511.1| Two-component response regulator colocalized with HrtAB transporter [Staphylococcus aureus 04-02981] gi|294824283|gb|EFG40707.1| two-component system [Staphylococcus aureus A9754] gi|294969993|gb|EFG46011.1| two-component system [Staphylococcus aureus A8819] gi|297178883|gb|EFH38128.1| two-component system [Staphylococcus aureus A8796] gi|302752233|gb|ADL66410.1| two component transcriptional regulator, winged helix family [Staphylococcus aureus subsp. aureus str. JKD6008] gi|312830708|emb|CBX35550.1| response regulator [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315128716|gb|EFT84717.1| hemin DNA-binding response regulator [Staphylococcus aureus subsp. aureus CGS03] gi|315197445|gb|EFU27782.1| hemin DNA-binding response regulator [Staphylococcus aureus subsp. aureus CGS01] gi|329315049|gb|AEB89462.1| Heme response regulator hssR [Staphylococcus aureus subsp. aureus T0131] gi|329723627|gb|EGG60156.1| heme response regulator HssR [Staphylococcus aureus subsp. aureus 21172] gi|329726694|gb|EGG63155.1| heme response regulator HssR [Staphylococcus aureus subsp. aureus 21189] gi|329730100|gb|EGG66490.1| heme response regulator HssR [Staphylococcus aureus subsp. aureus 21193] Length = 224 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 49/220 (22%), Positives = 99/220 (45%), Gaps = 4/220 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + + + + S E L R D++ ++ G + Sbjct: 5 LVVDDDPRILNYIASHLQTEHIDAYTQPSGEAALKLLEKQRVDIAVVDIM--MDGMDGFQ 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L ++ +P+I ++ +L F SG DD V KP +E++ R+ A+ RR ++ Sbjct: 63 LCNTLKNDYDIPVIMLTARDALSDKERAFISGTDDYVTKPFEVKELIFRIRAVLRRYNIN 122 Query: 123 NNRAETGPIRVFSDGR-DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 +N T + + +V + LP +E ++L L A + + QI I+G + Sbjct: 123 SNSEMTIGNLTLNQSYLELQVSNKTMTLPNKEFQLLFMLAARPKQIFTREQIIEKIWG-Y 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D +E V+ HI +LR++L+ +++ R GY ++ Sbjct: 182 DYEGDERTVDVHIKRLRQRLKKLNATLTIETVRGQGYKVE 221 >gi|30264882|ref|NP_847259.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47530368|ref|YP_021717.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49187698|ref|YP_030951.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|65322181|ref|ZP_00395140.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bacillus anthracis str. A2012] gi|165869682|ref|ZP_02214340.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167633982|ref|ZP_02392305.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|167638026|ref|ZP_02396304.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170685995|ref|ZP_02877218.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|170705430|ref|ZP_02895894.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|177651313|ref|ZP_02934144.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190567181|ref|ZP_03020096.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|196032754|ref|ZP_03100167.1| DNA-binding response regulator [Bacillus cereus W] gi|218906044|ref|YP_002453878.1| DNA-binding response regulator [Bacillus cereus AH820] gi|227817609|ref|YP_002817618.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228917471|ref|ZP_04081020.1| Two-component response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228929866|ref|ZP_04092881.1| Two-component response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229604412|ref|YP_002869087.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|254687622|ref|ZP_05151478.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254725188|ref|ZP_05186971.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254736926|ref|ZP_05194632.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254741961|ref|ZP_05199648.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254754441|ref|ZP_05206476.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|254757274|ref|ZP_05209301.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|30259557|gb|AAP28745.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47505516|gb|AAT34192.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49181625|gb|AAT57001.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|164714511|gb|EDR20030.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167513843|gb|EDR89211.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|167530783|gb|EDR93485.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170129555|gb|EDS98418.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|170670459|gb|EDT21199.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|172083139|gb|EDT68201.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190561685|gb|EDV15655.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|195994183|gb|EDX58138.1| DNA-binding response regulator [Bacillus cereus W] gi|218538505|gb|ACK90903.1| DNA-binding response regulator [Bacillus cereus AH820] gi|227006263|gb|ACP16006.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228829782|gb|EEM75404.1| Two-component response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228842143|gb|EEM87242.1| Two-component response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229268820|gb|ACQ50457.1| DNA-binding response regulator [Bacillus anthracis str. A0248] Length = 229 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 51/229 (22%), Positives = 88/229 (38%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++++ F + + + + D+ ++ L Sbjct: 5 ILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIML--PELDGW 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR-------EILARVAA 114 + R IR S+VP+I ++ TL F+ G DD V KP +L Sbjct: 63 SVCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKV 122 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + L+ ++ I V R V L E IL Y M N G + + Q+ Sbjct: 123 TKQLLENEDDILSIHGIHVHFPSRTVTVNKTDINLTHTEFEILAYFMKNPGIVLTREQLI 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 S I+G ++ A ++ V SHI LR KL K + + GY + N Sbjct: 183 SRIWG-YEFAGDDRTVNSHIRNLRNKLGEK--AKYITTVVRTGYKFEGN 228 >gi|227487201|ref|ZP_03917517.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867] gi|227092859|gb|EEI28171.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867] Length = 227 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 47/225 (20%), Positives = 95/225 (42%), Gaps = 9/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + + L +G + D+ ++ L G + Sbjct: 5 LIVEDELSLAEPLAFLLKKEGFDAIIATDGRTALVEFNKNDIDLVLLDLML--PGMSGTD 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +R S VP+I ++ + + + G DD V KP RE++AR+ A+ RR S Sbjct: 63 VCRRLRQVSTVPVIMVTARDTELDKVLGLELGADDYVTKPYSSRELIARIRAVLRRGGDS 122 Query: 123 NNRAETG-----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + + + V G+ +P +E +LEYL+ N G+ + + Q+ + Sbjct: 123 DGAVADQILEGGRVSLDVERHIVTVDGQQVAMPLKEFDLLEYLLRNAGRVLTRGQLIDRV 182 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 +G D + ++ H+ +LR K+ + + R LGY + Sbjct: 183 WGA-DYVGDTKTLDVHVKRLRSKIEAEPSHPTQLVTVRGLGYKFE 226 >gi|256380732|ref|YP_003104392.1| two component transcriptional regulator, winged helix family [Actinosynnema mirum DSM 43827] gi|255925035|gb|ACU40546.1| two component transcriptional regulator, winged helix family [Actinosynnema mirum DSM 43827] Length = 226 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 52/224 (23%), Positives = 96/224 (42%), Gaps = 8/224 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D D L +G + + D+ ++ L G + Sbjct: 5 LIVEDEESFADPLAFLLRKEGFTAALAATGPEALEEFDRNGADIVLLDLML--PGMSGTD 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + +R S VP+I ++ S + + G DD V KP RE++AR+ A+ RR S Sbjct: 63 VCKQLRQRSAVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGES 122 Query: 123 NNRAETG----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 P+R+ + V GE LP +E +LEYL+ N G+ + + Q+ ++ Sbjct: 123 EELLPQVLEAGPVRMDVERHVVTVNGEEVALPLKEFDLLEYLLRNVGRVLTRGQLIDRVW 182 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221 G D + ++ H+ +LR K+ + + R LGY + Sbjct: 183 GA-DYVGDTKTLDVHVKRLRSKVEPDPATPRHLVTVRGLGYKFE 225 >gi|217963397|ref|YP_002349075.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Listeria monocytogenes HCC23] gi|217332667|gb|ACK38461.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Listeria monocytogenes HCC23] gi|307572028|emb|CAR85207.1| two-component response regulator [Listeria monocytogenes L99] Length = 236 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 47/233 (20%), Positives = 95/233 (40%), Gaps = 16/233 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A + G + L S + D+ ++ L + Sbjct: 4 ILVVDDEASIVTLLQFNIEKAGFDVVTAEDGRSGYELALSEKPDLIVLDLML--PEMDGI 61 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ + +R VP++ ++ + + G DD + KP RE++AR+ AI RR + Sbjct: 62 EVTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTE 121 Query: 121 VSNNRAETGPIR-----------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 E + D + +Q ++ L +E +L +L +RGK + Sbjct: 122 GKAEIIEEITEDSEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFS 181 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 + Q+ ++ +D E +V+ H+S LR K+ + + + R GY ++ Sbjct: 182 RDQLLDTVW-NYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKME 233 >gi|315651808|ref|ZP_07904812.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986] gi|315485938|gb|EFU76316.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986] Length = 225 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 45/221 (20%), Positives = 100/221 (45%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++ G + E + + + D+ I ++ Sbjct: 6 ILVVDDEARMRKLVKDFLSIKGYIVLEAEDGEEALKVFDTNK-DIKLILLDVMMPKMDGF 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120 E+ IR +S+VP++ ++ + L+ + GVD+ + KP + ++ARV A+ R + Sbjct: 65 EVLEAIRQYSKVPVMMLTARSEERDELEGYKLGVDEYITKPFSPKILVARVEAVLRRTVG 124 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + G I V R + + L +E +L Y + N+G +++ +I S+++ Sbjct: 125 EPEEKLVAGAIEVDKVARSVYIDKKPVDLSFKEYELLTYFIENKGIALSREKILSSVW-N 183 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +D + +++H+ KLR K+ + D + + +GY + Sbjct: 184 YDYFGDARTIDTHVKKLRAKMGERG--DYIKTVWGMGYKFE 222 >gi|229134252|ref|ZP_04263067.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196] gi|228649182|gb|EEL05202.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196] Length = 233 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 46/223 (20%), Positives = 93/223 (41%), Gaps = 6/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD A +++ +DG + + + S D+ ++ Sbjct: 13 ILVADDDANIRELVCLFLRNDGFATAEAADGKEALAVYISTNVDLVVLDIM--MPIMDGW 70 Query: 62 ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L + + RA+ +PL+ ++ + F+ G DD + KP E+ RV A+ +R K Sbjct: 71 TLSKELRRANPDLPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVRALLKRYK 130 Query: 121 VSNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + + + E LP +E +L L G+ + Q+ I+G Sbjct: 131 IGSTQTIHLGNVILDRQTYKVMKGTESLTLPLKEFELLYKLAGTPGQVYTRVQLIDQIWG 190 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + D A ++ V+ HI +LR++ F +++ R LGY ++ Sbjct: 191 I-DYAGDDRTVDVHIKRLRERFATTHDFR-IETVRGLGYRLEV 231 >gi|149182951|ref|ZP_01861408.1| two-component response regulator [Bacillus sp. SG-1] gi|148849343|gb|EDL63536.1| two-component response regulator [Bacillus sp. SG-1] Length = 223 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 48/226 (21%), Positives = 90/226 (39%), Gaps = 11/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + +G + + + S D+ ++ L Sbjct: 3 ILVVDDEKDMVGLLNSYLTSNGYYVFPAGNGREAIDVMKSESIDLVLLDIM--MPFMDGL 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115 E + IR S VP+I ++ + + G DD V KP +E+ R + Sbjct: 61 EAAQEIRTFSDVPIIMLTAKGNEDDRVTGLKIGADDYVVKPFSPKELLARIEAALRRSKG 120 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 Y+ +++ + V G +V G L R+E +L LM N+G+ ++ Q+ Sbjct: 121 YKNGNLTSQMISHEELTVDLKGHMVQVDGITVNLTRKEFLLLALLMQNQGQVFSREQLLD 180 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 I+G F+ V++HI LR KL+ V + +GY + Sbjct: 181 QIWG-FESEGTARTVDTHIKTLRLKLKAAGS--YVQTVWGVGYKFN 223 >gi|6689205|emb|CAB65399.1| VicR protein [Staphylococcus aureus] Length = 239 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 49/224 (21%), Positives = 93/224 (41%), Gaps = 12/224 (5%) Query: 4 LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63 ++DD + D +G + L D+ ++ L G +E+ Sbjct: 13 VVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIML--PGRDGMEV 70 Query: 64 PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123 R +R ++P+I ++ S + + G DD V KP RE++ARV A RR Sbjct: 71 CREVRKKYEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYSQP 130 Query: 124 --------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 N I ++ D + +GE L RE + YL + G+ + + + Sbjct: 131 AQDTGNVTNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHLLQ 190 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218 ++G +D + V+ I +LR+K+ + + + ++R +GY Sbjct: 191 TVWG-YDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGY 233 >gi|16079696|ref|NP_390520.1| two-component response regulator YrkQ [Bacillus subtilis subsp. subtilis str. 168] gi|221310574|ref|ZP_03592421.1| hypothetical protein Bsubs1_14456 [Bacillus subtilis subsp. subtilis str. 168] gi|221314898|ref|ZP_03596703.1| hypothetical protein BsubsN3_14377 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319820|ref|ZP_03601114.1| hypothetical protein BsubsJ_14293 [Bacillus subtilis subsp. subtilis str. JH642] gi|221324099|ref|ZP_03605393.1| hypothetical protein BsubsS_14427 [Bacillus subtilis subsp. subtilis str. SMY] gi|1731135|sp|P54443|YRKP_BACSU RecName: Full=Uncharacterized transcriptional regulatory protein yrkP gi|1303715|dbj|BAA12371.1| YrkP [Bacillus subtilis] gi|2635088|emb|CAB14584.1| two-component response regulator [YrkQ] [Bacillus subtilis subsp. subtilis str. 168] Length = 231 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 47/227 (20%), Positives = 87/227 (38%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + D G + + L + + + + ++ G + Sbjct: 5 ILVVEDDEDIGDLLEESLTRAGYEVLRAKDGKRALQLVNDS---LDLVILDIMMPGISGI 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E + IR S VP++ ++ S + +G DD + KP E+ ARV A RR + Sbjct: 62 ETCQHIRKSSNVPILFLTARSSTLDKTEGLLAGGDDYMTKPFSEEELHARVIAQLRRYTI 121 Query: 122 SNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + E V + + + + L E RIL+ LM R K + I+ Sbjct: 122 YQEKKEQEETFLIGGKLRVSEEFNEVWKEEKQIKLSDLEYRILKLLMNKRNKIFSAQNIY 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 +++G N V HI KLR K+ + + ++ GY Sbjct: 182 ESVWGQPYFYCSNNTVMVHIRKLRSKIEDDPARPVYIKTEWGRGYRF 228 >gi|330970055|gb|EGH70121.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 227 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 44/221 (19%), Positives = 83/221 (37%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + G S ++ + + ++ L G + Sbjct: 10 ILIVEDEPKLASLMRDYLIAAGYSTHCLSNGLDVVPAVRANAPQLILLDIML--PGRDGM 67 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + +R+ S VP++ I+ L D G DD + KP RE + R Sbjct: 68 DICKELRSFSDVPIVMITARVEEIDRLLGLDPGADDYICKPFSPRE-MVARVKAILRRSS 126 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 S+ ++V G L E R+L + G+ ++ + +Y Sbjct: 127 SSEPHTPKGLQVDEAHYQASFNGVTLDLTPVELRLLATFARSPGRVFSRDHLLDRLYSDH 186 Query: 182 DEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221 V + V+SHI LR+KL G DP+ S +GY ++ Sbjct: 187 -RVVTDRTVDSHIRNLRRKLEQACPGQDPIQSLYGVGYKLE 226 >gi|161779855|gb|ABX79416.1| VanRc4 [Enterococcus casseliflavus] Length = 231 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 50/230 (21%), Positives = 90/230 (39%), Gaps = 12/230 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + ++G +E F DV+ ++ L Sbjct: 5 IIVVDDEKEIAELVTTFLRNEGFQVEPFYDGTSALAYLEKETVDVAVLDVML--PDIDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 +L + IR P++ ++ + G DD V KP + E++ARV RR + Sbjct: 63 QLLQTIRKTHFFPVLMLTAKGEDLDKITGLSLGADDYVTKPFNPLEVVARVKTQLRRYQR 122 Query: 122 SNNRAETGPIRVF--------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 N A I + + + G+ L E +IL YL ++G VA + Sbjct: 123 YNQSAVPQKIEEYEKEGLLLKINSHQCFLYGKEVFLTPIEFKILLYLFEHQGSVVASETL 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDW 222 F A++ N V +HI++LR+KL + + +GY I+ Sbjct: 183 FEAVWKEKYLD-NNNTVMAHIARLREKLNEQPRKPKLIKTVWGVGYIIEK 231 >gi|194015253|ref|ZP_03053869.1| response regulator [Bacillus pumilus ATCC 7061] gi|194012657|gb|EDW22223.1| response regulator [Bacillus pumilus ATCC 7061] Length = 240 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 43/228 (18%), Positives = 90/228 (39%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD + + +G + + +E L ED+ + ++ G+ Sbjct: 6 ILIADDEKAIVKMVERVLKKEGFK-HIYKAYHADEALDIVKNEDIHLLLLDVMMPGKSGF 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ +R +++ P+ ++ S L F G DD + KP + E++AR+ A R + Sbjct: 65 DVLPEMRKYTKAPIFYLTARTSDVDKLTGFAQGADDYITKPFNPLELVARIKAHLNRTYI 124 Query: 122 SNNRAETGPIRVFSDGRDPEVQG--------EVFPLPRRERRILEYLMANRGKRVAKTQI 173 S + EV + +L+Y + ++K QI Sbjct: 125 SLKEDHDEAQSQYEYAHFSYHPHSAELKVRGEVTACSAQLLSLLKYFCDHPNVVLSKDQI 184 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + ++G+ + N V HI KLR+K+ + + + + R +GY Sbjct: 185 YEKVWGVPSY-GDNNTVMVHIRKLREKIELDPSQPEYIVTIRGMGYKF 231 >gi|309804121|ref|ZP_07698202.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners LactinV 11V1-d] gi|309804844|ref|ZP_07698906.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners LactinV 09V1-c] gi|312871212|ref|ZP_07731310.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners LEAF 3008A-a] gi|312872643|ref|ZP_07732708.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners LEAF 2062A-h1] gi|312873308|ref|ZP_07733363.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners LEAF 2052A-d] gi|312874913|ref|ZP_07734932.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners LEAF 2053A-b] gi|325912258|ref|ZP_08174655.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners UPII 143-D] gi|325913632|ref|ZP_08175994.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners UPII 60-B] gi|308163889|gb|EFO66155.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners LactinV 11V1-d] gi|308165783|gb|EFO68004.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners LactinV 09V1-c] gi|311089658|gb|EFQ48083.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners LEAF 2053A-b] gi|311091188|gb|EFQ49577.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners LEAF 2052A-d] gi|311091685|gb|EFQ50064.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners LEAF 2062A-h1] gi|311093226|gb|EFQ51572.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners LEAF 3008A-a] gi|325475917|gb|EGC79086.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners UPII 143-D] gi|325476991|gb|EGC80141.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners UPII 60-B] Length = 234 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 42/225 (18%), Positives = 87/225 (38%), Gaps = 11/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G ++ E D+ ++ L + L Sbjct: 5 ILIVDDEKTISDIIKFNLTKEGYEVDTAYDGEEAVKKVDEFNPDLMILDLML--PKKDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-------ILARVAA 114 E+ R +R + +I ++ + + + G DD V KP +RE L R Sbjct: 63 EVAREVRQSHDLSIIMVTAKAAEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRREI 122 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + N G + + + E G L RE +L YL + G+ + + + Sbjct: 123 TQKSKPDENANITIGNLVIMPEAYIVEKAGTNIELTHREFELLRYLAQHMGQVMTREHLL 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGY 218 ++G +D + V+ + +LR+K+ + + ++R +GY Sbjct: 183 QTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSTPSILVTRRGVGY 226 >gi|301059336|ref|ZP_07200263.1| putative Sensory transduction protein regX3 [delta proteobacterium NaphS2] gi|300446565|gb|EFK10403.1| putative Sensory transduction protein regX3 [delta proteobacterium NaphS2] Length = 235 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 35/230 (15%), Positives = 89/230 (38%), Gaps = 15/230 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ +D + G + +G + + E L + D+ ++ G+ Sbjct: 5 ILVAEDDRHILSGLVDTLESEGYQVMPASDGEEALDLFKNNPFDLVLLDIM--MPGKSGY 62 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILA 110 ++ R IR+ +P+I ++ + G DD + KP Sbjct: 63 DVCREIRSTDEDIPIIMLTAKGEEIDKVVGLQLGADDYITKPFGVHELLARIAAVLRRAR 122 Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 R ++ + + + G ++ + + L RE ++L++ + + +++ Sbjct: 123 RNHEEAKKGENVPDLFKFGESQIDAKTFKMMKGRKSIDLSEREVKLLQFFFLHANEVLSR 182 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219 Q+ +A++G+ D ++ HI++LRKK+ + + + +GY Sbjct: 183 DQLLNAVWGI-DYYGTTRTLDQHIAQLRKKVERDPSNPRFIRTVHRVGYR 231 >gi|161779849|gb|ABX79411.1| VanRc4 [Enterococcus casseliflavus] Length = 231 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 50/230 (21%), Positives = 90/230 (39%), Gaps = 12/230 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + ++G +E F DV+ ++ L Sbjct: 5 IIVVDDEKEIAELVTTFLRNEGFQVEPFYDGTSALAYLEKETVDVAVLDVML--PDIDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 +L + IR P++ ++ + G DD V KP + E++ARV RR + Sbjct: 63 QLLQNIRKTHFFPVLMLTAKGEDLDKITGLSLGADDYVTKPFNPLEVVARVKTQLRRYQR 122 Query: 122 SNNRAETGPIRVF--------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 N A I + + + G+ L E +IL YL ++G VA + Sbjct: 123 YNQSAVPQKIEEYEKEGLLLKINSHQCFLYGKEVFLTPIEFKILLYLFEHQGSVVASETL 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDW 222 F A++ N V +HI++LR+KL + + +GY I+ Sbjct: 183 FEAVWKEKYLD-NNNTVMAHIARLREKLNEQPRKPKLIKTVWGVGYIIEK 231 >gi|206969651|ref|ZP_03230605.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|228923426|ref|ZP_04086712.1| hypothetical protein bthur0011_44030 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228954942|ref|ZP_04116960.1| hypothetical protein bthur0006_43080 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229072175|ref|ZP_04205383.1| hypothetical protein bcere0025_43400 [Bacillus cereus F65185] gi|229081927|ref|ZP_04214419.1| hypothetical protein bcere0023_45550 [Bacillus cereus Rock4-2] gi|229147236|ref|ZP_04275593.1| hypothetical protein bcere0012_43710 [Bacillus cereus BDRD-ST24] gi|229180989|ref|ZP_04308324.1| hypothetical protein bcere0005_43330 [Bacillus cereus 172560W] gi|206735339|gb|EDZ52507.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|228602546|gb|EEK60032.1| hypothetical protein bcere0005_43330 [Bacillus cereus 172560W] gi|228636245|gb|EEK92718.1| hypothetical protein bcere0012_43710 [Bacillus cereus BDRD-ST24] gi|228701515|gb|EEL54009.1| hypothetical protein bcere0023_45550 [Bacillus cereus Rock4-2] gi|228710913|gb|EEL62880.1| hypothetical protein bcere0025_43400 [Bacillus cereus F65185] gi|228804763|gb|EEM51364.1| hypothetical protein bthur0006_43080 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228836211|gb|EEM81566.1| hypothetical protein bthur0011_44030 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 229 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 46/229 (20%), Positives = 88/229 (38%), Gaps = 11/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D + + + ++ +S E D+ ++ L Sbjct: 4 ILLIEDEVSIAELQRDYLEINDFQVDVEHSGEIGLQTALQEDYDLIILDIML--PKMNGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IRA +P++ +S + G DD + KP E++ARV A R + Sbjct: 62 EICKQIRAVKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIARYER 121 Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + I + R + E +E +L + + + + + K Q+F Sbjct: 122 LLGNVSKQRDTLYIHGISIDQRARKVFINNEEVAFTTKEFDLLTFFVTHPNQVLNKEQLF 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 I+GL D A + V HI KLR+K+ + +++ GY + Sbjct: 182 ERIWGL-DSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRFNV 229 >gi|70726233|ref|YP_253147.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus haemolyticus JCSC1435] gi|68446957|dbj|BAE04541.1| alkaline phosphatase synthesis transcriptional regulatory protein [Staphylococcus haemolyticus JCSC1435] Length = 236 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 46/230 (20%), Positives = 99/230 (43%), Gaps = 14/230 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + G +E E + + ++ ++ L + +E Sbjct: 6 LVVDDEQSIVTLLKYNLETAGYIVEVAYDGEEALEKVNEIQPELVVLDVML--PKKDGIE 63 Query: 63 LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + IR+ VP++ ++ + + G DD + KP RE++ARV AI RR K Sbjct: 64 VCKTIRSDKNLVPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRRSKF 123 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPL---------PRRERRILEYLMANRGKRVAKTQ 172 ++ + + ++ E F + +E +L YL+ +G+ + + Sbjct: 124 ASEIEKADVDDEDILIENIRIRPEFFEVYKDDELLELTPKEFELLLYLIERQGRVITREH 183 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221 + ++++ ++ A + +V+ HIS LR KL + + R LGY ++ Sbjct: 184 MLNSVW-NYEFAGDSRIVDVHISHLRDKLEENPKQPKLIKTVRGLGYKLE 232 >gi|325108974|ref|YP_004270042.1| transcriptional regulator [Planctomyces brasiliensis DSM 5305] gi|324969242|gb|ADY60020.1| two component transcriptional regulator, winged helix family [Planctomyces brasiliensis DSM 5305] Length = 228 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 41/223 (18%), Positives = 81/223 (36%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++I+D + D + DG + + ++ D+ ++ L G +V Sbjct: 6 ILVIEDERSILDALVYNLQKDGFDVITATDGQDGLRRAQASLPDLIVLDLMLPVTDGLEV 65 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117 R + ++ ++ + F G DD V KP + +++RV Sbjct: 66 CRQLRADPRTKHIRILMLTAKSEEVDEIVGFSMGADDYVTKPFKVKPLISRVKALLRRPS 125 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 S + I V + E L E ++L L+ G+ + ++ Sbjct: 126 AKSNSQDIVTCRGISVDRMNHRVTLNNEEVLLTPTEFKLLWTLVRQSGRPFRRNELMDTC 185 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G D E ++ HI LR+KL + D +++ R +GY Sbjct: 186 RGE-DANALERTIDVHIRSLRQKLDDH--ADLIETVRGVGYRF 225 >gi|295697075|ref|YP_003590313.1| two component transcriptional regulator, winged helix family [Bacillus tusciae DSM 2912] gi|295412677|gb|ADG07169.1| two component transcriptional regulator, winged helix family [Bacillus tusciae DSM 2912] Length = 237 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 47/233 (20%), Positives = 91/233 (39%), Gaps = 16/233 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + G +++ S E + D+ ++ L G L Sbjct: 5 LIVDDEPAIVELVSWHLKKAGYAVDTAESGEEADRKVREGNVDLVVLDVML--PGMDGLS 62 Query: 63 LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R R +P+I ++ + D G DD V KP RE+++RV A+ RR Sbjct: 63 LCRSWRDDGIGIPVIFLTARDDEVDRVLGLDLGGDDYVTKPFLPRELVSRVKAVLRRAAA 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPL-------PRRERRILEYLMANRGKRVAKTQIF 174 S+ R + Q + RE +L + + G+ + ++ Sbjct: 123 SSRRQGGASHEIRVGDVVIWPQEYRVEVAGKPVQLTAREFTLLTVMASKPGRVWTRDELL 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGY----SIDW 222 ++G + A + +V+ +S LR K+ + + R +GY S++W Sbjct: 183 DRVWG-YTYAGDTRIVDVIVSHLRDKIEENPRKPRYITTVRGVGYGFGGSLEW 234 >gi|294339068|emb|CAZ87417.1| Transcriptional regulatory protein ompR [Thiomonas sp. 3As] Length = 240 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 43/229 (18%), Positives = 94/229 (41%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ A +G+ + + E +AR D+ ++ L G+ L Sbjct: 7 ILIVDDDGEIRNLLSAYLQKNGLRVTAVGDGKAMERALVAARIDLIVLDLML--PGDDGL 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R +RA S +P++ ++ + + G DD + KP RE+LAR+ I RR + Sbjct: 65 TLCRQLRAKSDIPVLMLTARSDETDRVVGLEMGADDYLTKPFSARELLARIKVILRRARS 124 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPR---------RERRILEYLMANRGKRVAKTQ 172 + +R + E R+L +++ + + + Q Sbjct: 125 LPVNLQPEDLREAHFAGWTLNTLHRHLISPAGVVVTLSGAEYRLLRIFLSHPNRVLNRDQ 184 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 + G + + ++ +S+LR++L + + + R +GY + Sbjct: 185 LVDLTQGR-EADPLDRSIDVQVSRLRQRLGDDPRDPVLIKTVRGMGYVL 232 >gi|291445133|ref|ZP_06584523.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291348080|gb|EFE74984.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 228 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 45/219 (20%), Positives = 91/219 (41%), Gaps = 5/219 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + + +G + A+ D+ ++ L G +E Sbjct: 9 LVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLML--PGRDGIE 66 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R+IRA S VP++ ++ + +SG DD + KP +E++AR+ A RR + Sbjct: 67 VCRLIRAESGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEEP 126 Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 T + G + +G+ L E +L L + + + ++G + Sbjct: 127 APEQLTIGDLVIDVAGHSVKREGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWG-Y 185 Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219 A + +V H+ +LR K+ + V + R +GY Sbjct: 186 RHAADTRLVNVHVQRLRSKVEKDPERPEIVVTVRGVGYK 224 >gi|21281747|ref|NP_644833.1| response regulator [Staphylococcus aureus subsp. aureus MW2] gi|57651127|ref|YP_184930.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp. aureus COL] gi|87160310|ref|YP_492740.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88193841|ref|YP_498626.1| two-component response regulator [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148266465|ref|YP_001245408.1| two component transcriptional regulator [Staphylococcus aureus subsp. aureus JH9] gi|150392498|ref|YP_001315173.1| response regulator receiver [Staphylococcus aureus subsp. aureus JH1] gi|221141403|ref|ZP_03565896.1| response regulator VicR [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253316856|ref|ZP_04840069.1| response regulator VicR [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|254663952|ref|ZP_05143424.1| response regulator VicR [Staphylococcus aureus subsp. aureus Mu50-omega] gi|269201708|ref|YP_003280977.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp. aureus ED98] gi|284023055|ref|ZP_06377453.1| response regulator VicR [Staphylococcus aureus subsp. aureus 132] gi|294849846|ref|ZP_06790586.1| transcriptional regulatory protein walR [Staphylococcus aureus A9754] gi|295406882|ref|ZP_06816686.1| two-component system [Staphylococcus aureus A8819] gi|296276710|ref|ZP_06859217.1| response regulator VicR [Staphylococcus aureus subsp. aureus MR1] gi|81695624|sp|Q5HJX7|WALR_STAAC RecName: Full=Transcriptional regulatory protein walR gi|81704770|sp|Q7A216|WALR_STAAW RecName: Full=Transcriptional regulatory protein walR gi|123407141|sp|Q2G2U6|WALR_STAA8 RecName: Full=Transcriptional regulatory protein walR gi|123763346|sp|Q2FKN8|WALR_STAA3 RecName: Full=Transcriptional regulatory protein walR gi|212288558|sp|A6TXG8|WALR_STAA2 RecName: Full=Transcriptional regulatory protein walR gi|212288559|sp|A5INQ9|WALR_STAA9 RecName: Full=Transcriptional regulatory protein walR gi|212288573|sp|Q2YUQ3|WALR_STAAB RecName: Full=Transcriptional regulatory protein walR gi|212288574|sp|A6QD57|WALR_STAAE RecName: Full=Transcriptional regulatory protein walR gi|212288575|sp|Q99XF3|WALR_STAAM RecName: Full=Transcriptional regulatory protein walR gi|212288576|sp|Q7A8E1|WALR_STAAN RecName: Full=Transcriptional regulatory protein walR gi|212288577|sp|Q6GKS7|WALR_STAAR RecName: Full=Transcriptional regulatory protein walR gi|212288578|sp|Q6GD72|WALR_STAAS RecName: Full=Transcriptional regulatory protein walR gi|212288579|sp|A8YYU1|WALR_STAAT RecName: Full=Transcriptional regulatory protein walR gi|212288580|sp|Q9RDT5|WALR_STAAU RecName: Full=Transcriptional regulatory protein walR gi|212288582|sp|A7WWQ5|WALR_STAA1 RecName: Full=Transcriptional regulatory protein walR gi|5114230|gb|AAD40237.1|AF136709_1 response regulator YycF [Staphylococcus aureus] gi|21203182|dbj|BAB93883.1| response regulator [Staphylococcus aureus subsp. aureus MW2] gi|57285313|gb|AAW37407.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp. aureus COL] gi|87126284|gb|ABD20798.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87201399|gb|ABD29209.1| two-component response regulator, putative [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147739534|gb|ABQ47832.1| two component transcriptional regulator, winged helix family [Staphylococcus aureus subsp. aureus JH9] gi|149944950|gb|ABR50886.1| response regulator receiver [Staphylococcus aureus subsp. aureus JH1] gi|262073998|gb|ACY09971.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp. aureus ED98] gi|294823394|gb|EFG39823.1| transcriptional regulatory protein walR [Staphylococcus aureus A9754] gi|294968347|gb|EFG44372.1| two-component system [Staphylococcus aureus A8819] gi|298693340|gb|ADI96562.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp. aureus ED133] gi|302331790|gb|ADL21983.1| transcriptional regulator WalR [Staphylococcus aureus subsp. aureus JKD6159] gi|302749929|gb|ADL64106.1| transcriptional regulator WalR [Staphylococcus aureus subsp. aureus str. JKD6008] gi|312828581|emb|CBX33423.1| response regulator [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129561|gb|EFT85553.1| response regulator VicR [Staphylococcus aureus subsp. aureus CGS03] gi|315195244|gb|EFU25632.1| response regulator VicR [Staphylococcus aureus subsp. aureus CGS00] gi|315197936|gb|EFU28269.1| adenylosuccinate synthase [Staphylococcus aureus subsp. aureus CGS01] gi|329731617|gb|EGG67977.1| transcriptional regulatory protein WalR [Staphylococcus aureus subsp. aureus 21189] Length = 233 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 49/224 (21%), Positives = 93/224 (41%), Gaps = 12/224 (5%) Query: 4 LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63 ++DD + D +G + L D+ ++ L G +E+ Sbjct: 7 VVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIML--PGRDGMEV 64 Query: 64 PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123 R +R ++P+I ++ S + + G DD V KP RE++ARV A RR Sbjct: 65 CREVRKKYEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYSQP 124 Query: 124 --------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 N I ++ D + +GE L RE + YL + G+ + + + Sbjct: 125 AQDTGNVTNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHLLQ 184 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218 ++G +D + V+ I +LR+K+ + + + ++R +GY Sbjct: 185 TVWG-YDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGY 227 >gi|228991893|ref|ZP_04151829.1| DNA-binding response regulator [Bacillus pseudomycoides DSM 12442] gi|228998007|ref|ZP_04157608.1| DNA-binding response regulator [Bacillus mycoides Rock3-17] gi|229005564|ref|ZP_04163274.1| DNA-binding response regulator [Bacillus mycoides Rock1-4] gi|228755664|gb|EEM04999.1| DNA-binding response regulator [Bacillus mycoides Rock1-4] gi|228761740|gb|EEM10685.1| DNA-binding response regulator [Bacillus mycoides Rock3-17] gi|228767622|gb|EEM16249.1| DNA-binding response regulator [Bacillus pseudomycoides DSM 12442] Length = 223 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 41/221 (18%), Positives = 90/221 (40%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L DD +++ +G + + + + ++ ++ Sbjct: 4 ILLADDDGHIRELLHYHLQKEGYKVFEAEDGKVAQSILEKENIHLAVVDIM--MPFIDGY 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L IR + +P+I ++ L F SG DD + KP E++ R+ A+ RR ++ Sbjct: 62 TLCEEIRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQM 121 Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + T + + + + LP +E +L L G+ ++ ++ ++G+ Sbjct: 122 LSADVITLHGTTIDRKSFEVKCNDQTILLPLKEFELLSQLAGYPGRTFSREELIELVWGM 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D +E V+ HI +LR + + + + R LGY ++ Sbjct: 182 -DFEGDERTVDVHIKRLRDRFSKRTDDFQIKTVRGLGYKLE 221 >gi|323341542|ref|ZP_08081780.1| response regulator [Lactobacillus ruminis ATCC 25644] gi|323091026|gb|EFZ33660.1| response regulator [Lactobacillus ruminis ATCC 25644] Length = 229 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 42/227 (18%), Positives = 86/227 (37%), Gaps = 9/227 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + ++G +E + + ++ D+ + ++ L Sbjct: 3 ILIVDDDKDIVELLSIYVKNEGYEVERAYNGKEAITKLNTN-PDIGLMILDIMMPQMDGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILA------RVAAI 115 + R +R SQ+P++ +S + G DD V KP + E++A R + Sbjct: 62 AVVREVRKDSQIPVLMLSAKTDDLDKIQGLIQGADDYVTKPFNPLEVMARVKSLLRRSQH 121 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + I V G+ L E IL L ++ + + +IF Sbjct: 122 DVKNDEPDQIEIGPLIIKKDSHEVETVTGKSIQLTALEFGILYLLASHPNRVFSADEIFE 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221 ++ + V V H+S LR K+ G + + +GY I+ Sbjct: 182 RVW-QQESVVSAKTVMVHVSHLRDKIEESTGGEKVIQTVWGVGYKIE 227 >gi|254432170|ref|ZP_05045873.1| two component transcriptional regulator, winged helix family [Cyanobium sp. PCC 7001] gi|197626623|gb|EDY39182.1| two component transcriptional regulator, winged helix family [Cyanobium sp. PCC 7001] Length = 240 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 55/227 (24%), Positives = 92/227 (40%), Gaps = 16/227 (7%) Query: 6 DDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPR 65 DD A V+ + G + E L + D+ ++ L + R Sbjct: 2 DDEAAVRRVLLMRLQLAGYRVICAEDGEEALTLFHQEQPDLVVLDVML--PKLDGFAVCR 59 Query: 66 IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125 +RA S VP+I +S ++ + D G DD + KP +E+ AR+A I RR+ + Sbjct: 60 RLRAESCVPIIFLSALDAIAERVSGLDLGADDYLPKPFSPKELEARIATILRRVGRGSAS 119 Query: 126 AETGPIR------------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 AE V ++ R GE L E +LE L G+ V + +I Sbjct: 120 AEPREQPSGTGVLRLGDLVVDTNRRQVTRDGERIALTYTEFSLLELLFREPGRVVPRAEI 179 Query: 174 FSAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGY 218 ++G A + VV+ ++++LR KL + + + R GY Sbjct: 180 LEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILTVRGTGY 226 >gi|126658291|ref|ZP_01729441.1| Two component Transcriptional regulator, Winged helix family protein [Cyanothece sp. CCY0110] gi|126620440|gb|EAZ91159.1| Two component Transcriptional regulator, Winged helix family protein [Cyanothece sp. CCY0110] Length = 225 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 51/221 (23%), Positives = 101/221 (45%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A + +G ++ N + D+ ++ L G L Sbjct: 6 ILVVEDEAKLAQFIELELKYEGYNITVVNDGLSGLTTARESNPDLILLDWML--PGISGL 63 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ + +R S+VP+I ++ + + D+G DD + KP + E+LARV A RR K Sbjct: 64 EICKRLRQTGSKVPIILLTAKDDISDRVAGLDAGADDYIVKPFNLEELLARVRANLRRNK 123 Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 N + + R+ + L +E +LEYLM++ + +++ QI ++G Sbjct: 124 EENPDLLQFLDLSLNRNTREVFRGNRLIELTAKEFDLLEYLMSHPKQVLSRDQILERVWG 183 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D + N++E ++ LR KL + + + R +GY + Sbjct: 184 -YDFMGDSNIIEVYVRYLRLKLEAEQEKRLIQTVRGVGYVL 223 >gi|108763038|ref|YP_633464.1| DNA-binding response regulator [Myxococcus xanthus DK 1622] gi|108466918|gb|ABF92103.1| DNA-binding response regulator [Myxococcus xanthus DK 1622] Length = 226 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 53/220 (24%), Positives = 93/220 (42%), Gaps = 6/220 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +LIDD + + G +G+S+ ++ D ++ G LE Sbjct: 6 LLIDDDTRMYELLEQYLGQNGLSVTHAADGGRGLAALEASAFDAVLLDVM--MPGMDGLE 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRLK 120 + + IRA S++P+I ++ + + G DD + KP RE+ R + Sbjct: 64 VCKRIRAKSRIPVIMLTAKGDETDRVVGLELGADDYLPKPFSPRELLARLRAVLRRSQPS 123 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 +R E+G + + GR+ V+ L E +L L+ G+ V + + G Sbjct: 124 AVADRLESGGVSIDVAGREVRVEERAVELTGLEFDLLVALVRRAGRVVPRDALLGEA-GR 182 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D V E V+ HIS LR+KL + +G + + R +GY Sbjct: 183 SDTVVGERTVDVHISHLRQKLGD-VGTRLIKTVRGVGYVF 221 >gi|20806986|ref|NP_622157.1| response regulator [Thermoanaerobacter tengcongensis MB4] gi|20515468|gb|AAM23761.1| Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Thermoanaerobacter tengcongensis MB4] Length = 225 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 49/224 (21%), Positives = 88/224 (39%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD + G ++G ++ E D+ ++ L Sbjct: 4 LLIIDDEEMFVKGLKLSLEEEGFEVDAAYDGEEGLEKVRIGNYDLVILDIML--PKMDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYR 117 + R IR S +P+I ++ + + G DD + KP + RE++AR+ Sbjct: 62 SVCREIRTFSNIPIIMLTARGDDVDRIVGIEIGADDYLAKPFNTRELIARIRALLRRASN 121 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 G + + R +G+ L +E IL L +N GK K ++ I Sbjct: 122 PYVKKKEEIRRGDLYINIPERAVYKRGKKIELTNKEFEILVLLASNPGKVYTKDKLLDLI 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 +G+ D + N V H+ KLR+KL + + +K GY + Sbjct: 182 WGV-DFYGDANTVTVHVRKLREKLEDDPANPQYIFTKWGAGYYM 224 >gi|1653495|dbj|BAA18408.1| OmpR subfamily [Synechocystis sp. PCC 6803] Length = 234 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 46/225 (20%), Positives = 93/225 (41%), Gaps = 11/225 (4%) Query: 5 IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64 +DD A ++ G + E + D+ ++ + Sbjct: 2 VDDEASIRRILETRLSMIGYEVVTAADGEEAIATFHESDPDLVVLDVM--MPKLDGYGVC 59 Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 + +R S +P+I ++ + + + G DD V KP +E+ AR+ ++ RR+ + Sbjct: 60 QELRKESDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDKNGM 119 Query: 125 RA-------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + IR+ ++ R E L E +LE L++ G+ ++++I + Sbjct: 120 PGIPSSGVLQIATIRIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEPFSRSEILQEV 179 Query: 178 YG-LFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220 +G + V+ VV+ HIS+LR KL + + + + R GY Sbjct: 180 WGYTPERHVDTRVVDVHISRLRAKLEEDPSNPELILTARGTGYLF 224 >gi|324325942|gb|ADY21202.1| two-component response regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 232 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 40/229 (17%), Positives = 86/229 (37%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + A +G + ++ E + ++ ++ ++ + Sbjct: 6 ILIVDDDQDIVRFVNANLMQEGFKVLSAHNGEEALKIINNNSIQLAILDIM--MPQMDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARVA 113 EL R IR +P++ +S S + F +G DD + KP E Sbjct: 64 ELCRRIREKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 123 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 ++V + + + R + GE+ L + E IL + A + + +I Sbjct: 124 FNQNAVQVIEKKISIRGLEIDEVSRTVMLYGEIINLTKTEYDILYLMAAAKNRVFTIEEI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + +++ N V HI++LR K+ + + +GY I+ Sbjct: 184 YESVWKERAYE-SNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIE 231 >gi|194467366|ref|ZP_03073353.1| two component transcriptional regulator, winged helix family [Lactobacillus reuteri 100-23] gi|194454402|gb|EDX43299.1| two component transcriptional regulator, winged helix family [Lactobacillus reuteri 100-23] Length = 226 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 44/223 (19%), Positives = 81/223 (36%), Gaps = 8/223 (3%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + +L++D + I +G + + + ++ L Sbjct: 5 VIMLVEDEESLASFLITELELEGYEVIWAKDGREALEIFKEKDITLILLDWMLPI--YDG 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYR 117 L + R IR S VP+I I+ D G+DD + KP E + V Sbjct: 63 LTVLRRIRQSSNVPIIMITARSQTSDISMALDQGLDDYITKPFEIEELLARIRVVLRRLG 122 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + K + P + V G+ L +E ++ L+ G + + + I Sbjct: 123 QKKAEKYDYKFRPFEINLLKHQFMVDGKRVHLTPKEFSLMVALIKEPGVVQTRDDLLNEI 182 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G +D + N V+ +I LR KL D + + R +GY + Sbjct: 183 WG-YDFDGQTNTVDVYIRALRNKLGKY--RDLIKTVRGIGYVL 222 >gi|307331346|ref|ZP_07610467.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] gi|297159902|gb|ADI09614.1| two-component system response regulator [Streptomyces bingchenggensis BCW-1] gi|306883024|gb|EFN14089.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] Length = 225 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 43/219 (19%), Positives = 89/219 (40%), Gaps = 5/219 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + + +G + + + D+ ++ L G +E Sbjct: 6 LVVDDDTALAEMLGIVLRGEGFEPSFVSDGDKALAAFRETKPDLVLLDLML--PGRDGIE 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R+IRA S VP++ ++ + +SG DD + KP +E++AR+ A RR + Sbjct: 64 VCRLIRAESGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEEP 123 Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + G + G+ L E +L L + + + ++G + Sbjct: 124 APEQLAIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWG-Y 182 Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219 A + +V H+ +LR K+ + V + R +GY Sbjct: 183 RHAADTRLVNVHVQRLRSKVEKDPERPEIVVTVRGVGYK 221 >gi|226354970|ref|YP_002784710.1| response regulator CheY [Deinococcus deserti VCD115] gi|226316960|gb|ACO44956.1| putative response regulator, cheY [Deinococcus deserti VCD115] Length = 234 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 54/219 (24%), Positives = 91/219 (41%), Gaps = 5/219 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++I+D + +G + E D+ ++ L LE Sbjct: 17 LVIEDEKDIARFIELELAAEGYATEVAFDGVTGLSKFREVNPDLVILDLML--PVLDGLE 74 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR S P+I ++ +Q ++ DSG DD + KP E+LARV A RR+ + Sbjct: 75 VARRIRKTSNTPIIILTAKDGIQDKVEGLDSGADDYLIKPFSIEELLARVRAHLRRVNPA 134 Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + DGR+ G L +E +LE L N GK ++ +I ++ Sbjct: 135 VTGEVRVADLVMNLDGREIFRGGRRVELSAKEFELLELLARNPGKVFSRFEIEEKVW--P 192 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + NVV+ +I LR+KL + + R +GY + Sbjct: 193 EYTGGSNVVDVYIGYLRRKLEEGGERRLIHTVRGVGYVL 231 >gi|156741487|ref|YP_001431616.1| two component transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156232815|gb|ABU57598.1| two component transcriptional regulator, winged helix family [Roseiflexus castenholzii DSM 13941] Length = 231 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 90/224 (40%), Gaps = 6/224 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +++DD + A G + L S R D+ ++ L G + Sbjct: 5 ILVVDDDRQITRLVSAYLEHAGFQTLTAHDGATALRLARSERPDLMVLDLMLPDIDGADL 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 R + +P+I ++ + + G DD + KP + RE++ARV A+ RR Sbjct: 65 TRAIRADPHIAAMPIIMLTARVDDTDRIVGLELGADDYITKPFNPREVVARVRAVLRRTS 124 Query: 121 VSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + E G +R+ D + V G+ L E +L ++ G + ++ Sbjct: 125 GGTPQPAVLLEAGRVRLDPDRHEVTVAGQPLNLTPTEFHLLRIFLSLPGHAFTRRELIEE 184 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G ++ E ++SHI LR+KL + +++ +GY + Sbjct: 185 GVG-YEYEGMERTIDSHIKNLRRKLESVDAGIRIETVYGVGYRL 227 >gi|89072663|ref|ZP_01159228.1| putative DNA-binding response regulator PhoB [Photobacterium sp. SKA34] gi|89051483|gb|EAR56937.1| putative DNA-binding response regulator PhoB [Photobacterium sp. SKA34] Length = 229 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 38/222 (17%), Positives = 92/222 (41%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D A +++ + G + ++ ++ L G G + Sbjct: 5 ILVVEDEAPIREMLCFVLEQKGYQAIEAEDYDTALEKMCEPYPELILMDWMLPGGSGINL 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ + Q+P++ ++ + + + G DD + KP +E++AR+ A+ RR+ Sbjct: 65 IKHLKRDELTRQIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELMARLKAVMRRVS 124 Query: 121 VSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + ++ E + E ++L + M ++ + ++ Q+ + ++ Sbjct: 125 PTALDDVIDVQGLKLDPVSHRVTSGDEPLEMGPTEFKMLHFFMTHQERVYSREQLLNNVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G + VE+ V+ HI +LRK L + V + R GY Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALESGGHDKMVQTVRGAGYRF 225 >gi|15805769|ref|NP_294466.1| response regulator [Deinococcus radiodurans R1] gi|94986415|ref|YP_605779.1| two component transcriptional regulator [Deinococcus geothermalis DSM 11300] gi|6458452|gb|AAF10321.1|AE001930_2 response regulator [Deinococcus radiodurans R1] gi|94556696|gb|ABF46610.1| two component transcriptional regulator, winged helix family [Deinococcus geothermalis DSM 11300] Length = 225 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 54/219 (24%), Positives = 91/219 (41%), Gaps = 5/219 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++I+D + +G + E D+ ++ L LE Sbjct: 8 LVIEDEKDIARFIELELAAEGYATEVAFDGVTGLSKFREVNPDLVILDLML--PVLDGLE 65 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR S P+I ++ +Q ++ DSG DD + KP E+LARV A RR+ + Sbjct: 66 VARRIRKTSNTPIIILTAKDGIQDKVEGLDSGADDYLIKPFSIEELLARVRAHLRRVNPA 125 Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + DGR+ G L +E +LE L N GK ++ +I ++ Sbjct: 126 VTGEVRVADLVMNLDGREIFRGGRRVELSAKEFELLELLARNPGKVFSRFEIEEKVW--P 183 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + NVV+ +I LR+KL + + R +GY + Sbjct: 184 EYTGGSNVVDVYIGYLRRKLEEGGERRLIHTVRGVGYVL 222 >gi|224477348|ref|YP_002634954.1| hypothetical protein Sca_1863 [Staphylococcus carnosus subsp. carnosus TM300] gi|222421955|emb|CAL28769.1| conserved hypothetical protein [Staphylococcus carnosus subsp. carnosus TM300] Length = 224 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 42/221 (19%), Positives = 95/221 (42%), Gaps = 4/221 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + +G +++ E D++ I+ G E Sbjct: 5 LIVDDDYQILHYVSSYLEKEGFKTVTYSNAEDALKYLDKQHVDIAIIDIM--MNGMDGFE 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L + I+ + +P+I ++ +L + + +G DD V KP +E++ R+ A+ RR +++ Sbjct: 63 LCQEIKDNYTLPVIMLTARDALSDKEEAYLTGTDDYVTKPFEVQELIFRIKAVLRRYQIN 122 Query: 123 NNRAETGPIRVFSDGRDPEVQ-GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + LP +E +L L+++ + ++ + ++G F Sbjct: 123 AENELEIGNLKLNQSYLEISTANKTMTLPNKEFHLLFLLVSHPKQIFSREECIERVWG-F 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 D ++ V+ HI +LR +L +++ R LGY + Sbjct: 182 DYDGDDRTVDVHIRRLRNRLNKIGSNISIETVRGLGYKAEV 222 >gi|152969448|ref|YP_001334557.1| putative positive response regulator [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238893919|ref|YP_002918653.1| putative positive response regulator [Klebsiella pneumoniae NTUH-K2044] gi|262041045|ref|ZP_06014264.1| DNA-binding response regulator [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|329999872|ref|ZP_08303542.1| transcriptional regulatory protein WalR [Klebsiella sp. MS 92-3] gi|150954297|gb|ABR76327.1| putative positive response regulator [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238546235|dbj|BAH62586.1| putative positive response regulator [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259041603|gb|EEW42655.1| DNA-binding response regulator [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328538191|gb|EGF64343.1| transcriptional regulatory protein WalR [Klebsiella sp. MS 92-3] Length = 238 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 46/228 (20%), Positives = 90/228 (39%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + D+G + + D ++ L G L Sbjct: 5 ILLVEDDEDIATLLRLNLQDEGYQIVHEADGGQALARLETQVWDAVILDLML--PGVDGL 62 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARVA 113 E+ R IR ++ P+I IS S + + G DD + KP + + R Sbjct: 63 EICRRIRQMTRYLPVIIISARTSEMHRVLGLEMGADDYLAKPFSLLELIARVKALFRRQE 122 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 A+ + L + R + + R+ +++GE L RE +L Y + G+ ++ + Sbjct: 123 AMGQNLLMDAGRLSCHGLSIDPLSREVKLRGETVDLTPREFDLLYYFARHPGEVFSRLAL 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++G + E+ V +HI++LR K+ + D + + GY Sbjct: 183 LEQVWG-YQHEGYEHTVNTHINRLRSKIERDPAEPDIILTVWGKGYKF 229 >gi|293375352|ref|ZP_06621634.1| response regulator receiver domain protein [Turicibacter sanguinis PC909] gi|292646108|gb|EFF64136.1| response regulator receiver domain protein [Turicibacter sanguinis PC909] Length = 224 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 47/221 (21%), Positives = 85/221 (38%), Gaps = 10/221 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +++DD + + + +G S + + L + D+ ++ L Sbjct: 6 ILIVDDEIEIIELLETVLKHEGFSHIFHATTGTEALSLLKALNPDLVLLDVML--PDLSG 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +L + I H Q+P++ IS L F G DD + KP +E+ RV A + Sbjct: 64 HQLIKEIHQHRQIPVLFISAKTEEFDRLLGFALGADDYITKPFSAKEVAFRVKARLKTTT 123 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + E L +E ++L YL+ + K V+K QI ++G Sbjct: 124 KTIQFGNITITDG-----IVSKNNEPLDLTAKEYKLLMYLVRHANKIVSKEQICHEVWGE 178 Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + N + HI +LRKK+ + + + LGY Sbjct: 179 DYFEFD-NTISVHIRRLRKKIEVDPSKPKHITTIIGLGYKF 218 >gi|283471583|emb|CAQ50794.1| response regulator protein [Staphylococcus aureus subsp. aureus ST398] Length = 224 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 49/220 (22%), Positives = 98/220 (44%), Gaps = 4/220 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + + + + S E L R D++ ++ G + Sbjct: 5 LVVDDDPRILNYIASHLQTEHIDAYTQPSGEAALKLLEKQRVDIAVVDIM--MDGMDGFQ 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L ++ +P+I ++ +L F SG DD V KP +E++ R+ A+ RR + Sbjct: 63 LCNTLKNDYDIPVIMLTARDALSDKERAFISGTDDYVTKPFEVKELIFRIRAVLRRYNIH 122 Query: 123 NNRAETGPIRVFSDGR-DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 +N T + + +V + LP +E ++L L A + + QI I+G + Sbjct: 123 SNSEMTIGNLTLNQSYLELQVSNKTMTLPNKEFQLLFMLAARPKQIFTREQIIEKIWG-Y 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D +E V+ HI +LR++L+ +++ R GY ++ Sbjct: 182 DYEGDERTVDVHIKRLRQRLKKLNATLTIETVRGQGYKVE 221 >gi|229060825|ref|ZP_04198180.1| DNA-binding response regulator [Bacillus cereus AH603] gi|228718472|gb|EEL70104.1| DNA-binding response regulator [Bacillus cereus AH603] Length = 225 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 42/221 (19%), Positives = 93/221 (42%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L DD +++ +G + + + + ++ ++ Sbjct: 6 ILLADDDKHIRELLHYHLQKEGFKVFEAEDGKVAQGILEKENIHLAIVDIM--MPFIDGY 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L IR + +P+I ++ L F SG DD + KP E++ R+ A+ RR ++ Sbjct: 64 TLCEEIRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQM 123 Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + T + G + + G+ LP +E +L L + G+ ++ ++ ++G+ Sbjct: 124 LSADIITLHGTTIDRKGFEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM 183 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D +E V+ H+ +LR + + + + R LGY ++ Sbjct: 184 -DFEGDERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 223 >gi|297589562|ref|ZP_06948203.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus MN8] gi|297578073|gb|EFH96786.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus MN8] gi|312437222|gb|ADQ76293.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus TCH60] Length = 233 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 49/220 (22%), Positives = 99/220 (45%), Gaps = 4/220 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + + + + S E L R D++ ++ G + Sbjct: 14 LVVDDDPRILNYIASHLQTEHIDAFTQPSGEAALKLLEKQRVDIAVVDIM--MDGMDGFQ 71 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L ++ +P+I ++ +L F SG DD V KP +E++ R+ A+ RR ++ Sbjct: 72 LCNTLKNDYDIPVIMLTARDALSDKERAFISGTDDYVTKPFEVKELIFRIRAVLRRYNIN 131 Query: 123 NNRAETGPIRVFSDGR-DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 +N T + + +V + LP +E ++L L A + + QI I+G + Sbjct: 132 SNSEMTIGNLTLNQSYLELQVSNKTMTLPNKEFQLLFMLAARPKQIFTREQIIEKIWG-Y 190 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D +E V+ HI +LR++L+ +++ R GY ++ Sbjct: 191 DYEGDERTVDVHIKRLRQRLKKLNATLTIETVRGQGYKVE 230 >gi|294500029|ref|YP_003563729.1| two-component response regulator [Bacillus megaterium QM B1551] gi|294349966|gb|ADE70295.1| two-component response regulator [Bacillus megaterium QM B1551] Length = 224 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 44/222 (19%), Positives = 94/222 (42%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L DD ++ +G + E L + ++ ++ + K Sbjct: 4 ILLADDDEHMRQLVRHYLQLEGYVVHEAEDGEEASGLLAKQHIHLAVVDIMMPHK--DGY 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ IR++ P+I ++ L+ F +G DD V KP +E++ R+ A+ RR +V Sbjct: 62 EVCEEIRSYYDFPIILLTAKDQLEDKEKGFLAGTDDYVTKPFEPKELIFRIKALLRRYEV 121 Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 N + + + G + LP +E +L L + G+ + ++ I+G Sbjct: 122 VNEKMIVLNNTFIDRKSYEVHCSGRLLILPMKEFELLAQLASYPGRIFTREELIHLIWGA 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 D + ++ H+ +LR++ + F + + R +GY ++ Sbjct: 182 -DFNGDNRTIDVHVKRLRERFEHTDDF-VITTVRGVGYKLEV 221 >gi|195978474|ref|YP_002123718.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195975179|gb|ACG62705.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 247 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 44/229 (19%), Positives = 84/229 (36%), Gaps = 14/229 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L+DD + +G E L D ++ L +E Sbjct: 13 LLVDDEEPILRLLDYHLAKEGFVTEMVTDGRTALALAEREPYDFIVLDIML--PQLDGIE 70 Query: 63 LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112 + + +R+ S+ P++ +S + + G DD V KP RE Sbjct: 71 VCKRLRSKGSKTPIMMVSAKSDEFDKVLALELGADDYVTKPFSPRELLARVKAILRRTEA 130 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + +R++ + + E+ PL +E +L YLM + + + + Sbjct: 131 EISGDGEEHREPFYTMSQLRLYPERHEVYKDKELLPLTPKEYELLLYLMKHPNMTLTRER 190 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + I+G +D E +V+ HI KLR+K+ + + + R GY Sbjct: 191 LLERIWG-YDFGQETRLVDVHIGKLREKIEDNPKAPQYIQTIRGYGYKF 238 >gi|169827681|ref|YP_001697839.1| transcription response regulator-like protein [Lysinibacillus sphaericus C3-41] gi|168992169|gb|ACA39709.1| transcription response regulator-like protein [Lysinibacillus sphaericus C3-41] Length = 220 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 50/223 (22%), Positives = 96/223 (43%), Gaps = 9/223 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D +++ ++E + ++ D+ ++ Sbjct: 5 ILVVEDDLEIQELIKQFLMTQNYNIEVASDGVEGIKRLNTQSFDLILLDVM--MPNLNGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119 E+ +++R HS +P+I ++ Q + FD G+DD + KP ++ RV A Sbjct: 63 EVAKMLRNHSNIPIIFLTALEEEQDQMKGFDLGIDDYITKPFSFHVLIRRVQAVLRRSNH 122 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 K N + V DG V E PL +E IL+ L+ N K + + I ++G Sbjct: 123 KSWGNHLNFNELNVDCDGYKAYVNKEEIPLTTKEFEILQLLLHNEKKVLTREIIVEKVWG 182 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D + E ++++HI LRKKL + + + +GY ID Sbjct: 183 -YDYSGETRMIDTHIKNLRKKLNLP----YIKTVKGIGYKIDE 220 >gi|23098049|ref|NP_691515.1| two-component response regulator [Oceanobacillus iheyensis HTE831] gi|22776274|dbj|BAC12550.1| two-component response regulator [Oceanobacillus iheyensis HTE831] Length = 229 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 48/223 (21%), Positives = 98/223 (43%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G E ++ + D+ ++ + L Sbjct: 5 ILIVEDEQKISRVLQLELEYEGYESEVASNGKDALNKIEQENWDLVLLDIMI--PQLSGL 62 Query: 62 ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R + RA +Q P+I ++ + + D G +D + KP E+LARV R++ Sbjct: 63 EVLRRVRRAENQTPIILLTARDEVHDKVSGLDLGANDYITKPFQIEELLARVRVHLRKVV 122 Query: 121 VSNNRAETGPI---RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + N +T + +V + GE L RE +L L+ N+ + + Q+ ++ Sbjct: 123 QAANDNQTLSVADLQVDLHAYEVTRNGEKIELTPREFNLLVCLLKNKNIVLTREQLIESV 182 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G +D + NVV+ +I LR+K+ + + R +GY+I Sbjct: 183 WG-YDYFGDTNVVDVYIRYLRQKVDKNFEIPIIQTVRGVGYTI 224 >gi|313898465|ref|ZP_07832002.1| response regulator receiver domain protein [Clostridium sp. HGF2] gi|312956847|gb|EFR38478.1| response regulator receiver domain protein [Clostridium sp. HGF2] Length = 229 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 46/228 (20%), Positives = 87/228 (38%), Gaps = 10/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D ++G + F + + R D++ ++ Sbjct: 5 ILVLDDEKEIADLVALYLNNEGYEVHKFYDSKDALEYMKNNRVDLALLDVM--MPEISGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH------REILARVAAI 115 E+ RIIR P+I ++ + G DD + KP + + R Sbjct: 63 EICRIIREKYMFPVIMLTAKVEDVDKIQGLSLGADDYITKPFNPLELVARVKAQLRRYKK 122 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 Y + + N + + + +D + EV L E IL YL NRG+ + ++F Sbjct: 123 YNPSQENVNVIDFKGLIIDNDSHRCTLYDEVLNLTPIEFSILWYLCKNRGRVITSEELFE 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 A++ N V HI +LR+K+ + + +GY I+ Sbjct: 183 AVWKKKYFD-SNNTVMVHIRRLREKMHEPPRNPKFIKTVWGVGYQIEE 229 >gi|310659856|ref|YP_003937577.1| DNA-binding response regulator in two-component regulatory system with phor (or crec) [Clostridium sticklandii DSM 519] gi|308826634|emb|CBH22672.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Clostridium sticklandii] Length = 231 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 34/226 (15%), Positives = 83/226 (36%), Gaps = 11/226 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++ +D + D +G + E + ++ ++ L E Sbjct: 6 LIAEDEKPISDIIKFNLEKEGYEIITAYDGEDALKKALNEELELIILDIML--PSMDGFE 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-------ILARVAAI 115 + + +R S VP+I ++ + + G DD + KP RE + R Sbjct: 64 ICKRVREKSSVPIIMVTAKEEEVDKILGLELGADDYITKPFSIRELVARVKANVRRQEMN 123 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + + + + + L RE +L++L + + ++ Q+ Sbjct: 124 INADQQEKEIIKNKDLSIDLMKYEVKKGSTSIDLTVREFELLKFLAKQKDQVFSREQLLE 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220 ++G ++ + V+ + +LR+K+ + + +KR +GY Sbjct: 184 RVWG-YEYYGDIRTVDVTVRRLREKVEDDSSNPTYIMTKRGVGYYF 228 >gi|257469073|ref|ZP_05633167.1| DNA-binding response regulator [Fusobacterium ulcerans ATCC 49185] gi|317063319|ref|ZP_07927804.1| two-component system response regulator [Fusobacterium ulcerans ATCC 49185] gi|313688995|gb|EFS25830.1| two-component system response regulator [Fusobacterium ulcerans ATCC 49185] Length = 221 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 46/222 (20%), Positives = 93/222 (41%), Gaps = 7/222 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + ++ E + D+ ++ L Sbjct: 5 ILIVEDEKNLIKVIEDTLLEESFLTYKALDGETALEMFYEHNPDLILLDINL--PKMNGW 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IR S +P+I ++ S L G DD + KP + + ++ + + + Sbjct: 63 EVCQNIRKESNIPIIMMTARDSEIDELKGLSIGADDYITKPFSLKVLNIKIKKMLKIDEN 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 S+ + + V E L RRE + LEYL+ N+G ++ + + ++G F Sbjct: 123 SSYKFNNLS--FDFRSGELIVNSESIELTRREIQFLEYLIKNKGIIFSRDVLLNEVWG-F 179 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 D ++ VV++ + +LRKKL + D + + R +GY D N Sbjct: 180 DFEGDDRVVDTLVKRLRKKLGDYS--DMIKTVRGMGYIFDEN 219 >gi|331091983|ref|ZP_08340815.1| hypothetical protein HMPREF9477_01458 [Lachnospiraceae bacterium 2_1_46FAA] gi|330402882|gb|EGG82449.1| hypothetical protein HMPREF9477_01458 [Lachnospiraceae bacterium 2_1_46FAA] Length = 229 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 48/227 (21%), Positives = 88/227 (38%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + D G +E N E ++ ++ L G Sbjct: 4 ILIVEDEEAIADLEKDYLELSGFEVEVANDGEMGLSKALGEDYNLIILDLML--PGVDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R P+I IS + G DD + KP E++ARV A R + Sbjct: 62 EICRRVRDEKNTPIIMISAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARYER 121 Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N E +++ + R V GE +E +L +L ++ K Q+F Sbjct: 122 LIGSTIEENKVIEIRGLKIDTTARRVWVNGEEKTFTTKEFDLLTFLASHPNHVYTKDQLF 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 S I+ + + + V HI K+R+K+ + +++ +GY Sbjct: 182 SEIWDM-ESIGDIATVTVHIKKIREKIEFDTSKPQYIETIWGVGYRF 227 >gi|309774605|ref|ZP_07669630.1| regulatory protein VanR [Erysipelotrichaceae bacterium 3_1_53] gi|308917636|gb|EFP63351.1| regulatory protein VanR [Erysipelotrichaceae bacterium 3_1_53] Length = 229 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 44/228 (19%), Positives = 86/228 (37%), Gaps = 10/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D ++G + F + R D++ ++ Sbjct: 5 ILVLDDEKEIADLVALYLNNEGYEVHKFYDSRDALEYMKNNRVDLALLDVM--MPEISGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH------REILARVAAI 115 E+ +IIR P+I ++ + G DD + KP + + R Sbjct: 63 EICKIIREKYMFPVIMLTAKVEDVDKIQGLSLGADDYITKPFNPLELVARVKAQLRRYKK 122 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 Y + + N + + + +D + EV L E IL YL N+G+ + ++F Sbjct: 123 YNPSQENVNVIDFKGLIIDNDSHRCTLYDEVLNLTPIEFSILWYLCKNKGRVITSEELFE 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 A++ N V HI +LR+K+ + + +GY I+ Sbjct: 183 AVWKEKYFD-SNNTVMVHIRRLREKMHEPPRNPKFIKTVWGVGYQIEE 229 >gi|294811198|ref|ZP_06769841.1| Putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|326439846|ref|ZP_08214580.1| putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294323797|gb|EFG05440.1| Putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 229 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 49/225 (21%), Positives = 95/225 (42%), Gaps = 10/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQ---SSAREDVSAIEAFLIGKGEK 59 +LI+D V+DG + G ++ + E L + +++ ++ L G Sbjct: 5 LLIEDDVSVRDGMELVLRRHGYGVDTAATGEEALALLAGPAGTAVELAVLDLML--PGID 62 Query: 60 VLELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 E+ R +RA S VP+I ++ + +G DD V KP+ + AR+ A RR Sbjct: 63 GFEVCRRLRATGSTVPVIMLTARGDDDDIVYGLGAGADDYVVKPVTAPVLEARIRAALRR 122 Query: 119 LKVSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + + G G LP E R+L L A+ G+ ++ Q+ + Sbjct: 123 AEPVRSARGENHAGLVIDRAGLTVTKHGAAVALPPTELRLLLELSASPGRVFSREQLLQS 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 ++ D + +V++ + +LR K+ ++ + + R GY Sbjct: 183 VW-EHDFLGDSRLVDAAVGRLRAKVEDRPAQPRWIQTVRGFGYRF 226 >gi|229030926|ref|ZP_04186945.1| DNA-binding response regulator [Bacillus cereus AH1271] gi|228730420|gb|EEL81381.1| DNA-binding response regulator [Bacillus cereus AH1271] Length = 225 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 41/221 (18%), Positives = 93/221 (42%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L DD +++ +G + + + + ++ ++ Sbjct: 6 ILLADDDKHIRELLHYHLQKEGFKVFEAEDGKVAQGVLEKENIHLAIVDIM--MPFVDGY 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L IR + +P+I ++ L F SG DD + KP E++ R+ A+ RR ++ Sbjct: 64 TLCEEIRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQM 123 Query: 122 -SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + + G + + G+ LP +E +L L + G+ ++ ++ ++G+ Sbjct: 124 LNADMITLHGTTIDRKGFEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM 183 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D +E V+ H+ +LR + + + + R LGY ++ Sbjct: 184 -DFEGDERTVDVHVKRLRDRFSKRTADFQITTVRGLGYKLE 223 >gi|225018069|ref|ZP_03707261.1| hypothetical protein CLOSTMETH_02005 [Clostridium methylpentosum DSM 5476] gi|224949066|gb|EEG30275.1| hypothetical protein CLOSTMETH_02005 [Clostridium methylpentosum DSM 5476] Length = 229 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 51/225 (22%), Positives = 90/225 (40%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + D + G + G S + D+ ++ L G Sbjct: 6 ILVVEDDPDINDLLCTILRRQGFQVTGAFSGSEGRMCIAQYNYDLILLDLML--PGITGE 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL IRA +P+I +S + + G DD + KP E+ ARV A RR K Sbjct: 64 ELIGEIRATKTMPVIVVSAKTAQADKISLLRLGADDFIVKPFDVDEVAARVEAQLRRYKQ 123 Query: 122 SN-----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + N + + D + V G+ L RE ILE L+ K + +F Sbjct: 124 FSSGSSGNLLRYKNLVLDRDAVEVSVNGQSVSLTAREFAILELLLRYPKKVFTRANLFEQ 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220 ++ + ++N V H+S LR KL + + + + +G+ + Sbjct: 184 VW-EEEFLGDDNTVNVHMSNLRSKLAKADPETEYIKTVWGIGFKM 227 >gi|51245737|ref|YP_065621.1| Pho two-component system sensor histidine kinase [Desulfotalea psychrophila LSv54] gi|50876774|emb|CAG36614.1| related to two-component system response regulator (Pho family) [Desulfotalea psychrophila LSv54] Length = 242 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 44/229 (19%), Positives = 80/229 (34%), Gaps = 15/229 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A ++ G ++ +S E + D ++ L G L Sbjct: 6 ILIVEDEADIQQLVSYNLVRAGFNVTCADSGEEALGCLAREAFDCILLDIML--PGISGL 63 Query: 62 ELPRIIRAHSQV-----PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILAR 111 E+ + IR + P+I ++ + +D + G DD + KP R Sbjct: 64 EVCQSIRQNEGKLDAGSPIIMMTAKGEEEDIIDGLEKGADDYITKPFSPKVLVARVKAVV 123 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + + + + QG+ L E IL L G + Sbjct: 124 RRGQKAEAHSDSGHISIANLVIDQGRYEVTAQGKAIQLTLTEFGILVLLAEKPGWVFTRQ 183 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 QI A+ G +D V ++ I LRKKL +++ R +GY Sbjct: 184 QIIDAVRG-YDFLVTPRAIDVQIFGLRKKLGAAGQS--IETVRGIGYKF 229 >gi|150019401|ref|YP_001311655.1| two component transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149905866|gb|ABR36699.1| two component transcriptional regulator, winged helix family [Clostridium beijerinckii NCIMB 8052] Length = 228 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 46/227 (20%), Positives = 87/227 (38%), Gaps = 10/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + + +G +E D+ ++ L G+ Sbjct: 4 ILIIEDDINIAELEKEYLQLNGYKVEIIQDGIQGLKKALIGTYDLIIVDLML--PGKDGY 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R ++P+I +S + G DD + KP E++AR+ + R + Sbjct: 62 EIVREVREKYEIPIIIVSARSEDIDKIKGLGFGADDYLTKPFSPAELVARIKSHMLRYER 121 Query: 122 SNNRAETGPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + I D V G+ L +E ++ +L +N K Q+F Sbjct: 122 LSGNRPQLNIISHKALEIRTDSHKVFVNGKEVILTTKEYELMVFLASNPNIVFTKDQLFD 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 I+G D + V HI KLRKK+ + + +++ GY + Sbjct: 182 RIWGE-DYYGDTATVAVHIQKLRKKIEKDPGNPEYIETLWGTGYRFN 227 >gi|313123384|ref|YP_004033643.1| alkaline phosphatase synthesis transcriptional regulatory protein phop [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312279947|gb|ADQ60666.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 241 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 42/235 (17%), Positives = 80/235 (34%), Gaps = 17/235 (7%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D V F +G E + + D I L + + Sbjct: 3 ILMVEDDKSVSQMMELFFKKEGWEQVSAYDGEEAVEIFQTHPRDFDIITLDLNLPKKDGI 62 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL----------- 109 ++ + IR S+ P+I ++ S + G DD V KP ++ Sbjct: 63 QVAKEIRRISETVPIIMVTARDSESDQVLGLGVGADDYVTKPFSPMALIARIKALHRRVM 122 Query: 110 ---ARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166 + S + V L +E +L + + Sbjct: 123 LEGQPRNLPKNIPSNDFDLETNHIRISKSRREVYFDENRVEGLTPKEFDLLYTMAQKPKQ 182 Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ Q+ ++G ++ EE V++HI KLR+KL K G + + +GY D Sbjct: 183 VFSREQLLELVWG-YEYFGEERTVDAHIKKLRQKLE-KSGPQIIQTVWGVGYKFD 235 >gi|326441388|ref|ZP_08216122.1| putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 225 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 44/219 (20%), Positives = 92/219 (42%), Gaps = 5/219 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + + +G + A+ D+ ++ L G +E Sbjct: 6 LVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLML--PGRDGIE 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLKV 121 + R+IRA S VP++ ++ + +SG DD + KP +E++AR+ A R + Sbjct: 64 VCRLIRAESGVPIVMLTAKSDTVDVVVGLESGADDYIIKPFKPKELVARIRARLRRSEEP 123 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + G + + G + G+ L E +L L + + + ++G + Sbjct: 124 APEQLTIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWG-Y 182 Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219 A + +V H+ +LR K+ + V + R +GY Sbjct: 183 RHAADTRLVNVHVQRLRSKVEKDPERPEIVVTVRGVGYK 221 >gi|188587493|ref|YP_001919038.1| two component transcriptional regulator, winged helix family [Natranaerobius thermophilus JW/NM-WN-LF] gi|179352180|gb|ACB86450.1| two component transcriptional regulator, winged helix family [Natranaerobius thermophilus JW/NM-WN-LF] Length = 234 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 43/229 (18%), Positives = 96/229 (41%), Gaps = 14/229 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + D +G E + E +S + ++ L G+ Sbjct: 6 LIVEDEQPIADIINFNLVKEGYETEVAYNGEDGLEKFASFSPHIIVLDLML--PGKDGFS 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILARV 112 + + IR+ S VP++ ++ S + + G DD V KP +R + Sbjct: 64 VCKEIRSQSSVPILVLTAKDSEVDKVLGLELGADDYVTKPFGNRELLARIKALLRRVNLS 123 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + + + + + + QG+ L RE ++ YL+ +G+ +++ + Sbjct: 124 GQDSSSSEKDEDILKYNDVEINLKTAEVKKQGQAIDLTYREFQLFVYLVKRQGEVISRER 183 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 + ++G +D E+ V+ I +LR+KL + G + +KR +GY + Sbjct: 184 MIEEVWG-YDFIGEDRTVDVTIRRLREKLEDDPGSPSYIMTKRGMGYYL 231 >gi|28572226|ref|NP_789006.1| two component system response regulator [Tropheryma whipplei TW08/27] gi|28410357|emb|CAD66743.1| putative two component system response regulator [Tropheryma whipplei TW08/27] Length = 227 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 43/222 (19%), Positives = 88/222 (39%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++D A G + + + D+ ++ L Sbjct: 6 ILVVDDEANIRDLLAASLRFAGYGVVTAGNGAGAVSAVLAEEPDLIIMDVML--PDMSGF 63 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPI--HHREILARVAAIYRR 118 + +R P+I +S S + + G DD V KP + Sbjct: 64 AATKRLREAGFRCPVIFLSARDSTEDKITGLTVGGDDYVTKPFSLDEILARVAAILRRTK 123 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + G + + + + ++G + L E ++L Y M N + ++K+QI ++ Sbjct: 124 IDDVDATIRVGDLVIDQNSNEVFLKGNLIDLSPTEFKLLRYFMLNPNRVLSKSQILGHVW 183 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D + ++VES+IS +R+KL + +KR GY + Sbjct: 184 D-YDFDGDSSIVESYISYIRRKLAAYSSETIIHTKRGFGYIM 224 >gi|226310515|ref|YP_002770409.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226093463|dbj|BAH41905.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 261 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 52/226 (23%), Positives = 92/226 (40%), Gaps = 12/226 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++ DD V++ F + L + + DV ++ E Sbjct: 36 LVADDDPNVREIIRLYFEKQQIELIAATDGREALEMMEKEQPDVVILDVM--MPQLDGFE 93 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 R IR P+I ++ + + G DD V KP REI+AR+ AI RRL+ Sbjct: 94 ACREIRKKWDTPIIMLTAKDEEFDRVLGLELGADDYVTKPFSPREIVARIRAIMRRLQPK 153 Query: 123 N--------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + D R+ V GE +E +L L+ + G ++ Q+ Sbjct: 154 PKVEDEAALRTFVFEQLTIDLDKREVIVAGEKVSFRPKEFDLLVQLVKSPGSVWSREQLL 213 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G FD + ++ HI K+R++L +KL +D + + +GY Sbjct: 214 EQVWG-FDYFGDVRTIDVHIKKIRQRL-DKLPYDCIQTVWGIGYKF 257 >gi|229816442|ref|ZP_04446743.1| hypothetical protein COLINT_03495 [Collinsella intestinalis DSM 13280] gi|229807984|gb|EEP43785.1| hypothetical protein COLINT_03495 [Collinsella intestinalis DSM 13280] Length = 278 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 52/234 (22%), Positives = 89/234 (38%), Gaps = 15/234 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D ++G + + L D++ ++ L Sbjct: 47 ILVVDDEKTITDLVGIYLRNEGFDVTLAYNGADAARLILEREFDLAVLDIML--PDVDGF 104 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL R IR P+I ++ S ++ G DD + KP E++AR A RR Sbjct: 105 ELLRTIRTERTYPVIMLTARDSQSDKIEGLTLGADDYMVKPFRPLELVARCKAQLRRYTR 164 Query: 122 SNNRAE------------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 +R + + + D R V + E IL YL +RG V Sbjct: 165 YGSREQAAPVEDAGPIISFNGLEINRDARTVTVDEKSVRCTPLEYSILLYLAEHRGHVVP 224 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 ++F A++ A N V HI LR+KL + + + +GY+I+ Sbjct: 225 VEELFRAVWDEEFMAGSNNTVMVHIRHLREKLGDDAQNPRFIKNIWGVGYTIEK 278 >gi|124009093|ref|ZP_01693776.1| response regulator DrrA [Microscilla marina ATCC 23134] gi|123985307|gb|EAY25227.1| response regulator DrrA [Microscilla marina ATCC 23134] Length = 232 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 40/225 (17%), Positives = 89/225 (39%), Gaps = 12/225 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61 +++DD + + G ++ N+ + + + + ++ + G + Sbjct: 10 LVVDDEPDIVELLQYNLEKAGYEVKTANNGKEAIKVAKTFLPQLILMDIMMPKMDGVEAG 69 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115 R + + +I ++ + L FD G DD + KPI R + L R Sbjct: 70 RQLREMTEIADTYIIYLTARVEEYSELAAFDVGADDYITKPIRPRALLSRIAALFRREQK 129 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + ++ + G + + + LP++E +L +L N K ++ ++ Sbjct: 130 KHQKNEKKDKIQVGNLTIDRESYIVYNDKTPITLPKKEFEMLFFLAQNPNKVFSRDELLQ 189 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I+G D V V+ HI K+R+K+ G + + + +GY + Sbjct: 190 NIWGT-DVYVLARTVDVHIRKVREKI----GGGYIKTVKGVGYKL 229 >gi|322805157|emb|CBZ02721.1| phosphate regulon transcriptional regulatory protein PhoB (SphR) [Clostridium botulinum H04402 065] Length = 229 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 36/229 (15%), Positives = 85/229 (37%), Gaps = 13/229 (5%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + +++DD ++D + G+++ + + + + D+ ++ Sbjct: 5 IILVVDDDKDIRDMINIYLVNQGMNVYTAANGIEALDILKNIKVDLIILDIM--MPKMDG 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI--------HHREILARV 112 ++ IR VP+I +S + G DD V KP ++ Sbjct: 63 IKACMKIREMLNVPIIILSAKIDEADKILGLTIGADDYVGKPFSPLELLARIKSQLRRYK 122 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + + + + ++ + L E +IL L NRG+ + Sbjct: 123 QLNNNFKNTTKEVIQIDELSINISNHEVFLRDKQIKLTPYEFKILVLLAQNRGRVFSIAS 182 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 I+ +++ D + V HI ++RKK+ ++ + + +GY I+ Sbjct: 183 IYESVW-EEDYVASDRTVTVHIRRIRKKIGK--EYNYIKTVWGVGYKIE 228 >gi|317126129|ref|YP_004100241.1| transcriptional regulator [Intrasporangium calvum DSM 43043] gi|315590217|gb|ADU49514.1| two component transcriptional regulator, winged helix family [Intrasporangium calvum DSM 43043] Length = 248 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 47/233 (20%), Positives = 92/233 (39%), Gaps = 17/233 (7%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + G ++ L DV ++ L G +E Sbjct: 15 LVVDDEPSLVRVVVGYLQAGGFEVDSAPDGPTALDLARRTDPDVIVLDVGL--PGMDGIE 72 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +R + ++ ++ L G DD + KP RE++ARV + RR + S Sbjct: 73 VCRTLRTFTDAYVVMLTARADEVDMLIGLAVGADDYITKPFSPRELMARVQTVLRRPRQS 132 Query: 123 NNRAE--------------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 G + + R+ + G+ L R E +L+ L Sbjct: 133 AADRPGAAARGSGEEAARVFGALVIDVLAREVSLGGQPVELTRTEFDLLDTLSERPRVAF 192 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 +++ + I+G A +E++V+ HI +LR+KL + + + R +GY + Sbjct: 193 SRSLLLERIWGGGAWAGDEHLVDVHIGRLRRKLGDDAREAKYIRTIRGIGYRM 245 >gi|268316084|ref|YP_003289803.1| two component transcriptional regulator, winged helix family [Rhodothermus marinus DSM 4252] gi|262333618|gb|ACY47415.1| two component transcriptional regulator, winged helix family [Rhodothermus marinus DSM 4252] Length = 228 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 41/223 (18%), Positives = 93/223 (41%), Gaps = 6/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + ++G ++E + E + ++ L G + Sbjct: 5 ILLVEDEIAMAALLRQGLEEEGYAVEWVLTGEEALARLEHLEPALLVLDVRL--PGMDGV 62 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118 E+ R +R +P++ ++ ++ + +G DD + KP E+ + Sbjct: 63 EVCRQVRQRWPDLPVLMLTALDDVENRVRGLRAGADDYLPKPFAFEELLARIEALLRRSK 122 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + + GP+ + + R L RE +L YLM + + +++ QI+ ++ Sbjct: 123 RQPTRHLLRNGPLTLDLNARTATCGERTLSLTPREFDLLAYLMQHPRRAISRLQIYREVW 182 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 G D +++E +IS LR+KL+ + + R +GY + Sbjct: 183 G-HDFDHGTSLLEVYISYLRRKLQEAGCPGYIATVRGVGYRYE 224 >gi|226365094|ref|YP_002782877.1| two-component response regulator MprA [Rhodococcus opacus B4] gi|226243584|dbj|BAH53932.1| two-component response regulator MprA [Rhodococcus opacus B4] Length = 228 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 49/224 (21%), Positives = 94/224 (41%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V++ +G S+E ++AR D ++ L Sbjct: 3 ILVVDDDRAVRESLRRSLSFNGYSVELAVDGIDALEKVANARPDALVLDVM--MPRLDGL 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +R+ P++ ++ S+ + D+G DD + KP E+LAR+ A+ RR Sbjct: 61 EVCRRLRSTGDDLPILVLTARDSVSERVSGLDAGADDYLPKPFALEELLARLRALLRRAA 120 Query: 121 VSN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + + R+ L R E +LE LMAN + + + +I Sbjct: 121 PEPGIDSEKMTFEDLTLDPVTREVTRGERSISLTRTEFSLLEMLMANPRRVLTRGRILEE 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G +D N +E ++ LR+K + + R +GY + Sbjct: 181 VWG-YDFPTSGNALEVYVGYLRRKTEADGETRLLHTVRGVGYVL 223 >gi|187777031|ref|ZP_02993504.1| hypothetical protein CLOSPO_00576 [Clostridium sporogenes ATCC 15579] gi|187773959|gb|EDU37761.1| hypothetical protein CLOSPO_00576 [Clostridium sporogenes ATCC 15579] Length = 232 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 38/230 (16%), Positives = 83/230 (36%), Gaps = 12/230 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++D ++G + ++ L + + ++ + Sbjct: 6 ILIVDDEKEIRDLIDIYLTNEGYTTLKASNGIEALELLKTNNVHLIILDIM--MPKMDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH--------REILARVA 113 E IR +P+I +S + +G DD + KP + ++ + Sbjct: 64 EACMKIREEKSMPIIMLSAKSEDMDKIIGLTTGADDYITKPFNPLELLARVKSQLRRYIK 123 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + I + + + ++ L RE ILE L NRG + +I Sbjct: 124 LNNSNGNENEDIVTIEDITINVATHEVRIGDQLVKLTPREFDILELLARNRGVVFSIEKI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 + ++ + N V HI KLR+K+ + + +GY ++ Sbjct: 184 YELVW-KEEFLDSNNTVMVHIRKLREKIEQNPRNPRYIKTVWGVGYKVEK 232 >gi|90961187|ref|YP_535103.1| two-component response regulator [Lactobacillus salivarius UCC118] gi|90820381|gb|ABD99020.1| Two-component response regulator [Lactobacillus salivarius UCC118] Length = 229 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 44/227 (19%), Positives = 93/227 (40%), Gaps = 9/227 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + ++G +E + + + D++ + ++ + Sbjct: 3 ILIVDDDKDIVELLSIYVENEGYEVEKAYNGKEALSKL-NMNPDIALMILDVMMPQMDGM 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R SQ+P++ +S + G DD V KP + E++ARV ++ RR + Sbjct: 62 EVIREVRKESQIPVLILSAKTDDLDKIQGLVQGADDYVTKPFNPLEVMARVKSLLRRAEH 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQG------EVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + E I + + + L E IL L ++ + + +IF Sbjct: 122 NVKNNELDQIEIGPLIIKKDSHEVKTLEGKEIKLTALEFGILHLLASHPNRVFSADEIFE 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 ++ + V V H+S LR K+ + G + + +GY I+ Sbjct: 182 RVW-QQESVVSAKTVMVHVSHLRDKIEDATNGEQVIQTVWGVGYKIE 227 >gi|163942563|ref|YP_001647447.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163864760|gb|ABY45819.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] Length = 233 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 44/230 (19%), Positives = 90/230 (39%), Gaps = 11/230 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ ++G + E + + ++ + Sbjct: 6 ILIVDDEKEIRKLIAIYLKNEGYEVLQAGDGEEGLEIVKKRDVHLIVLDIM--MPKIDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + +R +++P+I +S + +G DD V KP + E++AR+ + RR Sbjct: 64 HMCMKVREIAEMPIIMLSAKTQDMDKILGLTTGADDYVAKPFNPLELIARIKSQLRRYMK 123 Query: 122 S-------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N E G I++ R + + L RE +LE L N+G + QI+ Sbjct: 124 MSGASVKDENVFEVGDIKINIATRQVIIANKEVKLTPREFEVLELLARNQGMVLNAEQIY 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223 ++ +N V HI K+R+K+ + + +GY I+ + Sbjct: 184 ERVWKEQAFQ-SDNTVMVHIRKIREKIEAIPRKPRYIKTVWGVGYKIEKD 232 >gi|302870950|ref|YP_003839586.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor obsidiansis OB47] gi|302573809|gb|ADL41600.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor obsidiansis OB47] Length = 217 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 51/221 (23%), Positives = 98/221 (44%), Gaps = 8/221 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D ++ +G +E + + V ++ L K Sbjct: 3 ILLIEDEEKLRKIMKLYLEKEGFEVEEASDGNEAIEKFQPSMYSVVILDVMLPQK--DGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R IR P+I ++ + F+ G DD V KP+ +EI+ARV AI +R K Sbjct: 61 SVLREIRKKDDTPVIMLTARGEDDDKIFGFELGADDYVVKPVSPKEIVARVKAILKRTKK 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 ++ + + R+ V+G+ L ++E +L YL + +++ QI ++++G + Sbjct: 121 PSSNDI---LFIDKAAREVYVKGQKLNLTQKEYELLLYLYERQNIALSREQILNSVWG-Y 176 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + + V++HI LR+KL D + + R GY + Sbjct: 177 EYYGDLRTVDTHIKNLREKLGEL--RDCIKTVRGYGYKFEV 215 >gi|210614871|ref|ZP_03290370.1| hypothetical protein CLONEX_02584 [Clostridium nexile DSM 1787] gi|210150513|gb|EEA81522.1| hypothetical protein CLONEX_02584 [Clostridium nexile DSM 1787] Length = 224 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 44/224 (19%), Positives = 91/224 (40%), Gaps = 5/224 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ +D + + S++ E ++A D ++ L Sbjct: 3 ILIAEDERDLNQIITERLKKEHYSVDSCFDGEEALDYLAAAPYDAVILDIM--MPKLDGL 60 Query: 62 ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119 + R + + P++ ++ S++ + D+G +D + KP E+LARV + + Sbjct: 61 SVLRKMRNKNENTPVLLLTAKDSVEDRVKGLDAGANDYLVKPFAFEELLARVRVLVRKTA 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 V E G + V D G+ L +E +L Y++ N G +++ ++ ++ Sbjct: 121 AVQKTCYEVGGLEVHVDTHQVLRNGKEIALSSKEFALLRYMVQNEGIVLSREKLEQHLW- 179 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 +D NVV+ +I LRKK+ + + R GY + N Sbjct: 180 NYDYMGSSNVVDVYIRYLRKKIDEGFEPKLIHTVRGAGYVLRVN 223 >gi|119963093|ref|YP_948412.1| DNA-binding response regulator [Arthrobacter aurescens TC1] gi|119949952|gb|ABM08863.1| DNA-binding response regulator [Arthrobacter aurescens TC1] Length = 253 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 46/220 (20%), Positives = 87/220 (39%), Gaps = 5/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + +DG + S++ D+ ++ L G + Sbjct: 34 ILVVDDDEALAEMIGIVLRNDGFEPVFCADGGQALEVFRSSKPDLVLLDLML--PGSDGI 91 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR S VP++ ++ + +SG DD V KP E++ARV A R Sbjct: 92 EVCRQIRGESDVPIVMLTAKSDTSDVVRGLESGADDYVPKPFKPAELVARVRARLRPGDQ 151 Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + G GE L E +L L + + + ++G Sbjct: 152 KAPETLRIADVTIDVAGHLVTRGGERISLTPLEFDLLVALARKPWQVFTRELLLEQVWG- 210 Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219 + A + +V H+ +LR K+ + + V + R +GY Sbjct: 211 YRHAADTRLVNVHVQRLRSKIERDPEAPEVVLTVRGVGYK 250 >gi|28377603|ref|NP_784495.1| response regulator [Lactobacillus plantarum WCFS1] gi|254555781|ref|YP_003062198.1| response regulator [Lactobacillus plantarum JDM1] gi|300767564|ref|ZP_07077474.1| response regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308179756|ref|YP_003923884.1| response regulator [Lactobacillus plantarum subsp. plantarum ST-III] gi|28270436|emb|CAD63338.1| response regulator [Lactobacillus plantarum WCFS1] gi|254044708|gb|ACT61501.1| response regulator [Lactobacillus plantarum JDM1] gi|300494549|gb|EFK29707.1| response regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308045247|gb|ADN97790.1| response regulator [Lactobacillus plantarum subsp. plantarum ST-III] Length = 242 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 45/234 (19%), Positives = 89/234 (38%), Gaps = 18/234 (7%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + G + L + ++ L + Sbjct: 6 ILVVDDEPAIVTLLSYNLKQAGYEVVTATDGADALSLGLAQSFTCILLDLML--PKLDGM 63 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ + +R Q P+I ++ + + G DD + KP RE+LAR+ A+ RR Sbjct: 64 EVTKKLRQEKVQTPIIIVTAKNDEFDKVFGLELGADDYITKPFSPREVLARIKAVIRRTT 123 Query: 121 VSNNRAETGPI-------------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167 P+ ++ + G+ L +E +L Y + G+ Sbjct: 124 PDEPVTPPAPMPPANRAVMLVGDLQIDQNKYRVARNGKNISLTPKEFELLVYFVEREGRV 183 Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 +++ I + ++G +D A E +V+ HIS LR+K+ + + + R GY Sbjct: 184 LSRDAILNHVWG-YDYASETRIVDIHISHLREKIEADPKQPRLIRTVRGFGYEF 236 >gi|30261916|ref|NP_844293.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47527169|ref|YP_018518.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49184751|ref|YP_028003.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|65319193|ref|ZP_00392152.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bacillus anthracis str. A2012] gi|167633325|ref|ZP_02391650.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|167638767|ref|ZP_02397042.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170686070|ref|ZP_02877292.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|170707305|ref|ZP_02897760.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|177650467|ref|ZP_02933434.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190566270|ref|ZP_03019188.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|229603598|ref|YP_002866289.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|254684475|ref|ZP_05148335.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254724002|ref|ZP_05185788.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254734778|ref|ZP_05192490.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254741180|ref|ZP_05198868.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254759968|ref|ZP_05211992.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|30256542|gb|AAP25779.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47502317|gb|AAT30993.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49178678|gb|AAT54054.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|167513231|gb|EDR88602.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|167531363|gb|EDR94041.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170127804|gb|EDS96676.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|170669767|gb|EDT20508.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|172083611|gb|EDT68671.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190562405|gb|EDV16372.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|229268006|gb|ACQ49643.1| DNA-binding response regulator [Bacillus anthracis str. A0248] Length = 232 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 40/229 (17%), Positives = 84/229 (36%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +G + + E + ++ ++ ++ + Sbjct: 6 ILIVDDDQDIVRFMNVNLMQEGFKVFSAYNGEEALEIINNNSIQLAILDIM--MPQMDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARVA 113 EL R IR +P+I +S S + F +G DD + KP E Sbjct: 64 ELCRRIREKHSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 123 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 ++V + + + R + GE L + E IL + A + + +I Sbjct: 124 FNQNAVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYEILYLMAAAKNRVFTIEEI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221 + +++ N V HI++LR K+ + + + +GY I+ Sbjct: 184 YESVWKERAYE-SNNTVMVHIARLRNKIEEDPKEPKFIQNVWGVGYKIE 231 >gi|323483423|ref|ZP_08088811.1| hypothetical protein HMPREF9474_00560 [Clostridium symbiosum WAL-14163] gi|323691077|ref|ZP_08105359.1| DNA-binding response regulator ResD [Clostridium symbiosum WAL-14673] gi|323403277|gb|EGA95587.1| hypothetical protein HMPREF9474_00560 [Clostridium symbiosum WAL-14163] gi|323504863|gb|EGB20643.1| DNA-binding response regulator ResD [Clostridium symbiosum WAL-14673] Length = 229 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 46/227 (20%), Positives = 87/227 (38%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G +E N+ E D+ ++ L G Sbjct: 4 ILIVEDEESIAELEKDYLELSGFEVEMENNGEAGLKRGLEEDFDLLILDLML--PGIDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 E+ + +R P+I +S + G DD + KP E++ARV A R + Sbjct: 62 EICKKVREVKNTPIIMVSAKKDDIDKIRGLGLGADDYITKPFSPSEMVARVKAHMARYER 121 Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N E +++ R + GE +E +L +L N K ++F Sbjct: 122 LIGSGTPENEIIEIRGLKIDKTARRVYINGEEKNFTTKEFDLLAFLAQNPNHVFTKEELF 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 S I+ + + + V HI K+R+K+ N +++ +GY Sbjct: 182 SKIWDM-ESLGDIATVTVHIKKIREKIEFNTAKPQYIETIWGVGYRF 227 >gi|294629682|ref|ZP_06708242.1| DNA-binding response regulator [Streptomyces sp. e14] gi|292833015|gb|EFF91364.1| DNA-binding response regulator [Streptomyces sp. e14] Length = 229 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 44/219 (20%), Positives = 89/219 (40%), Gaps = 5/219 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + + +G + A+ D+ ++ L G +E Sbjct: 10 LVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLML--PGRDGIE 67 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R+IRA S VP++ ++ + +SG DD + KP +E++AR+ A RR + Sbjct: 68 VCRLIRAESGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEEP 127 Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + G + G+ L E +L L + + + ++G + Sbjct: 128 APEQLAIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWG-Y 186 Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219 A + +V H+ +LR K+ + V + R +GY Sbjct: 187 RHAADTRLVNVHVQRLRSKVEKDPEKPEIVVTVRGVGYK 225 >gi|222159810|gb|ACM47283.1| response regulator VanRD [Enterococcus faecium] Length = 232 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 37/231 (16%), Positives = 83/231 (35%), Gaps = 13/231 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +DG ++ F + + S D++ ++ L Sbjct: 5 ILVVDDEKELADLVEVYLKNDGYTVYKFYNGKDALKCIESVELDLAILDIML--PDVDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLD---------FFDSGVDDVVNKPIHHREILARV 112 ++ + IR P+I ++ + ++V + R Sbjct: 63 QICQKIREKFYFPVIMLTAKVEDGDKIMGLSVADDYITKPFNPLEMVARVKAQLRQYMRY 122 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + + + + + G+ L E IL YL +G V+ + Sbjct: 123 KQPSLKQEAECTEYDIRGMTISKSSHKCILFGKEIQLTPTEFSILWYLCERQGTVVSTEE 182 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 +F A++G N V +HI +LR+K++ + + +GY+I+ Sbjct: 183 LFEAVWGERYFD-SNNTVMAHIGRLREKMKEPSRNPKFIKTVWGVGYTIEK 232 >gi|226225049|ref|YP_002759156.1| two-component response phosphate regulator [Listeria monocytogenes Clip81459] gi|254993857|ref|ZP_05276047.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL J2-064] gi|255520613|ref|ZP_05387850.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL J1-175] gi|225877511|emb|CAS06225.1| two-component response phosphate regulator [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|328465109|gb|EGF36377.1| DNA-binding response regulator PhoP [Listeria monocytogenes 1816] gi|328471114|gb|EGF42018.1| DNA-binding response regulator PhoP [Listeria monocytogenes 220] Length = 236 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 47/233 (20%), Positives = 95/233 (40%), Gaps = 16/233 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A + G + L S + D+ ++ L + Sbjct: 4 ILVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLML--PEMDGI 61 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ + +R VP++ ++ + + G DD + KP RE++AR+ AI RR + Sbjct: 62 EVTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTE 121 Query: 121 VSNNRAETGPIR-----------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 E + D + +Q ++ L +E +L +L +RGK + Sbjct: 122 GKAEIIEEITEDSEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFS 181 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 + Q+ ++ +D E +V+ H+S LR K+ + + + R GY ++ Sbjct: 182 RDQLLDTVW-NYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKME 233 >gi|301056178|ref|YP_003794389.1| DNA-binding response regulator [Bacillus anthracis CI] gi|300378347|gb|ADK07251.1| DNA-binding response regulator [Bacillus cereus biovar anthracis str. CI] Length = 229 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 46/229 (20%), Positives = 89/229 (38%), Gaps = 11/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D + + + ++ +S E + ++ ++ L Sbjct: 4 ILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDYNLIILDIML--PKMNGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IRA +P++ +S + G DD + KP E++ARV A R + Sbjct: 62 EICKQIRAIKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121 Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + I + R + E +E +L + + N + + K Q+F Sbjct: 122 LLGNVSKQRDTLYIHGISIDQRARKVFINNEEIAFTTKEFDLLTFFVTNPNQVLNKEQLF 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 I+GL D A + V HI KLR+K+ + +++ GY + Sbjct: 182 ERIWGL-DSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRFNV 229 >gi|291618073|ref|YP_003520815.1| BaeR [Pantoea ananatis LMG 20103] gi|291153103|gb|ADD77687.1| BaeR [Pantoea ananatis LMG 20103] gi|327394471|dbj|BAK11893.1| transcriptional regulatory protein BaeR [Pantoea ananatis AJ13355] Length = 235 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 53/223 (23%), Positives = 92/223 (41%), Gaps = 5/223 (2%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + ++++D + I + D+ ++ L G+ Sbjct: 9 LILVVEDEPKLAQLMIDYLQASNYRTHHLAHGNEVLDYVNQTPPDLILLDLML--PGKDG 66 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L L R IR S++P+I ++ L + G DD V KP RE++ARV I RR+K Sbjct: 67 LTLCREIRRDSELPIIMVTARTEEIDRLLGLEIGADDYVCKPFSPREVVARVKTILRRVK 126 Query: 121 VSNNRAETGP-IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S A ++V + E L E R+L+ L GK ++ Q+ + +Y Sbjct: 127 RSPEDAPVASLLKVHESRFQASWRDEPLDLTPAEFRLLKTLSLEPGKVFSREQLLNHLYD 186 Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + V + ++SHI LR+KL N + + +GY + Sbjct: 187 DY-RVVTDRTIDSHIKNLRRKLENLDSEQPFIRAVYGMGYRWE 228 >gi|239617230|ref|YP_002940552.1| two component transcriptional regulator, winged helix family [Kosmotoga olearia TBF 19.5.1] gi|239506061|gb|ACR79548.1| two component transcriptional regulator, winged helix family [Kosmotoga olearia TBF 19.5.1] Length = 226 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 50/222 (22%), Positives = 95/222 (42%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + G + +E LE D+ ++ L Sbjct: 4 ILLVEDDETLAMGIKYALEQEAFLVEVATELESARKRIDEKDFDLILLDVML--PNGNGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 +L + IR +S +P+I ++ + + G DD + KP +E++AR+ A RR++ Sbjct: 62 QLCKEIRTYSDLPIIFLTARDEEVNIVMGLELGADDYITKPFKLKELVARIRANLRRIEG 121 Query: 122 SNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 G IR+ + V+ L E R+L LM N G+ + + Q+ ++ Sbjct: 122 KKTVNRYLISGQIRLDIVNQKLMVEDAEQHLTPVEFRLLFALMDNAGRILTRDQLLGYVW 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219 + V++N + HI KLR+K+ + + + + R LGY Sbjct: 182 NTESDFVDDNTLSVHIRKLREKIEDDPSKPEHILTVRGLGYR 223 >gi|210610528|ref|ZP_03288454.1| hypothetical protein CLONEX_00644 [Clostridium nexile DSM 1787] gi|210152387|gb|EEA83393.1| hypothetical protein CLONEX_00644 [Clostridium nexile DSM 1787] Length = 244 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 32/222 (14%), Positives = 84/222 (37%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + DG + + D+ ++ L Sbjct: 18 ILIVEDDSFLNKMLAYNLTADGYGVTSALNARTAADAIRQREFDLVLLDINL--PDGNGF 75 Query: 62 ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH---REILARVAAIYR 117 EL ++I H +I ++ + ++ G D + KP + + + A+ Sbjct: 76 ELCKLIKPQHPDTIVIFLTANDQESDQIRGYEVGAVDYITKPFVIGALQRKIKAMFAMLE 135 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 K + + + G + + + + G+ L E ++L N + + + Q+ + Sbjct: 136 HHKPAKDIYDDGRLFLDFSEQTASLNGKPLTLSPMEYKMLNLFRKNPRQVLTRGQLLEKL 195 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 + + + V+E+ + + IS++R K+ G + + +GY Sbjct: 196 WDIDERFVDEHTLTTSISRIRSKIEADGGAPYIKTVYGMGYQ 237 >gi|289551851|ref|YP_003472755.1| Two-component response regulator SA14-24 [Staphylococcus lugdunensis HKU09-01] gi|289181382|gb|ADC88627.1| Two-component response regulator SA14-24 [Staphylococcus lugdunensis HKU09-01] Length = 233 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 48/224 (21%), Positives = 93/224 (41%), Gaps = 12/224 (5%) Query: 4 LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63 ++DD + D +G + L D+ ++ L G +E+ Sbjct: 7 VVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIML--PGRDGMEV 64 Query: 64 PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123 R +R ++P+I ++ S + + G DD V KP RE++ARV A RR Sbjct: 65 CREVRKKFEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYSQP 124 Query: 124 NRAETG--------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + I ++ D + +GE L RE + YL + G+ + + + Sbjct: 125 AQEVNNASNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHLLQ 184 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218 ++G +D + V+ I +LR+K+ + + + ++R +GY Sbjct: 185 TVWG-YDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGY 227 >gi|170783046|ref|YP_001711380.1| putative two-component system response regulator [Clavibacter michiganensis subsp. sepedonicus] gi|169157616|emb|CAQ02814.1| putative two-component system response regulator [Clavibacter michiganensis subsp. sepedonicus] Length = 226 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 51/225 (22%), Positives = 91/225 (40%), Gaps = 8/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D A + + L +G ++ D+ ++ L G Sbjct: 4 IMLVEDEASLSEPLAFLLQREGYEVDVVEDGPAAVAAFEKDGTDLILLDLML--PGLPGT 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117 E+ R IR S VP+I ++ S + + G DD V KP R I A + Sbjct: 62 EVCREIRTRSAVPIIMLTAKDSEVDIVVGLELGADDYVTKPYSTRELLARIRAVLRRRVE 121 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 N E G +R+ + EV G +P +E +LE L+ N G+ + + Q+ + Sbjct: 122 VDDEPLNVLEVGSVRMDVERHTVEVDGREIAMPLKEFELLELLLRNAGRVLTRGQLIDRV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 +G D + ++ HI ++R K+ + + R LGY + Sbjct: 182 WG-SDYFGDTKTLDVHIKRIRSKIEREPSDPVLLVTVRGLGYRFE 225 >gi|168259535|ref|ZP_02681508.1| response regulator [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|205350765|gb|EDZ37396.1| response regulator [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 240 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 42/224 (18%), Positives = 84/224 (37%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + I + N + D+ ++ L G L Sbjct: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLINHGDKVLPYVRQTPPDLILLDLML--PGTDGL 70 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118 L R IR S +P++ ++ L + G DD + KP RE + + + Sbjct: 71 TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + P+ + G+ L E R+L+ L GK ++ Q+ + +Y Sbjct: 131 QRELQQQDAESPLMIDESRFQASWCGKALDLTPAEFRLLKTLSLEPGKVFSREQLLNHLY 190 Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + V + ++SHI LR+KL + + + +GY + Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLESLDAKQSFIRAVYGVGYRWE 233 >gi|51209875|ref|YP_063539.1| Ycf27 [Gracilaria tenuistipitata var. liui] gi|50657629|gb|AAT79614.1| ompR transcriptional regulator [Gracilaria tenuistipitata var. liui] Length = 241 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 47/229 (20%), Positives = 95/229 (41%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ G + + E + ++ ++ Sbjct: 8 ILIVDDETSIRTILETRLSMIGYDVISASDGEEGLHIFRREYPNLVILDVM--MPKLDGY 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + IR S VP+I ++ + + + G DD V KP +E+ AR+ + RR+ Sbjct: 66 GVCQEIRKESDVPIIMLTALGDVSDRITGLELGADDYVIKPFSPKELEARIRCVLRRVYK 125 Query: 122 SNNRA--------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 N + G +++ ++ R + E L E +LE L++ G+ +++ I Sbjct: 126 ININSSIPSSGILNMGFLKIDTNKRQVYKKNERVRLTGMEFSLLELLVSKAGEAFSRSSI 185 Query: 174 FSAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 ++G + V+ VV+ HIS+LR KL + D + + R GY Sbjct: 186 LQEVWGYKPERHVDTRVVDVHISRLRAKLEDDPSNPDLILTARGTGYLF 234 >gi|329726494|gb|EGG62957.1| heme response regulator HssR [Staphylococcus epidermidis VCU144] Length = 224 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 49/226 (21%), Positives = 95/226 (42%), Gaps = 6/226 (2%) Query: 1 MF--VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE 58 M +++DD + + + + F S E + D++ ++ G Sbjct: 1 MINCLIVDDDKKLLQYVSSHLERESIQTHTFTSGEASLDFLENKNVDIAIVDIM--MSGM 58 Query: 59 KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 EL + ++ +P+I ++ +L F SG DD V KP +E+L R+ A+ RR Sbjct: 59 DGFELCQTLKDDYHIPVIMLTARDALSDKERAFLSGTDDYVTKPFEVKELLFRIKAVLRR 118 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQ-GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 +++ + + + + LP +E ++L L +N + I I Sbjct: 119 YQINADNELQLGNLILNQSYMEITVGSKTMNLPNKEFQLLFLLASNPKHIFTRDYIIEKI 178 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 +G FD ++ V+ HI +LR++L + + R GY +D N Sbjct: 179 WG-FDYEGDDRTVDVHIKRLRQRLSKLKSSISIQTVRGQGYRVDQN 223 >gi|313836289|gb|EFS74003.1| response regulator receiver domain protein [Propionibacterium acnes HL037PA2] gi|314928754|gb|EFS92585.1| response regulator receiver domain protein [Propionibacterium acnes HL044PA1] gi|314971209|gb|EFT15307.1| response regulator receiver domain protein [Propionibacterium acnes HL037PA3] gi|328906497|gb|EGG26272.1| response regulator receiver domain protein [Propionibacterium sp. P08] Length = 232 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 46/230 (20%), Positives = 92/230 (40%), Gaps = 11/230 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V++ G ++ S D ++ L Sbjct: 5 ILVVDDDRAVRESLARSLQYSGYEVDSAADGVEALAHLSGTHPDAVIMDVM--MPRLDGL 62 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E R++R++ P++ ++ ++ +D D+G DD + KP E+LAR+ A+ RR + Sbjct: 63 EATRMLRSNGNDVPILVLTARDAVDDRVDGLDAGADDYMVKPFALDELLARLRALTRRSR 122 Query: 121 VSNNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + E + R+ L R E +L + N K + ++ + Sbjct: 123 PEPEQDEAPEQLSFADLTLDPGSREVTRGNRRISLTRTEFALLAVFLQNPEKVLERSWLL 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI-DWN 223 ++G FD N +E +I LR+K + + + R +GY + + N Sbjct: 183 HEVWG-FDFPTTANSLEVYIGYLRRKTEHDGEPRLIHTVRGVGYVLREAN 231 >gi|308185867|ref|YP_003929998.1| phosphate regulon transcriptional regulatory protein phoB [Pantoea vagans C9-1] gi|317047132|ref|YP_004114780.1| winged helix family two component transcriptional regulator [Pantoea sp. At-9b] gi|308056377|gb|ADO08549.1| Phosphate regulon transcriptional regulatory protein phoB [Pantoea vagans C9-1] gi|316948749|gb|ADU68224.1| two component transcriptional regulator, winged helix family [Pantoea sp. At-9b] Length = 229 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 37/222 (16%), Positives = 89/222 (40%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D A +++ + + + D+ ++ L G G + Sbjct: 5 ILVVEDEAPIREMLCFVLEQNDYQPIEAEDYDSAVGKLIEPWPDLILLDWMLPGGSGIQF 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ + +P++ ++ + + + G DD + KP +E++AR+ A+ RR+ Sbjct: 65 IKHLKREAMTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELMARIKAVMRRIS 124 Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 E + + + + E ++L + M + + ++ Q+ + ++ Sbjct: 125 PMAVEEVIEMQGLSLDPSSHRVMSETTPLEMGPTEYKLLHFFMTHPERVYSREQLLNHVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G + VE+ V+ HI +LRK L V + R GY Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALEVSGHDRMVQTVRGTGYRF 225 >gi|167629726|ref|YP_001680225.1| transcriptional regulator, putative [Heliobacterium modesticaldum Ice1] gi|167592466|gb|ABZ84214.1| transcriptional regulator, putative [Heliobacterium modesticaldum Ice1] Length = 234 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 42/230 (18%), Positives = 85/230 (36%), Gaps = 14/230 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D V +G + + + ++ ++ L Sbjct: 4 ILIVEDEIDVAKLVADQLKSEGFQVLMAHDGKSAIDSIDVEEFNLFILDIML--PDMDGS 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILAR 111 E+ + IR + P+I ++ + + F G DD + KP Sbjct: 62 EVLQYIRRKTSKPVIMLTAKDNDMDKVVNFTLGADDYIVKPFSLIELTARVKAVLRRTEG 121 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 I G + + D + +V+G V L +E +L+YL + V Sbjct: 122 THHITENQVGKETILHCGSLEINCDTTEVKVKGNVISLKAKEFTLLKYLAERPNRVVTIA 181 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220 QI+ +++G + ++N V HIS+LR K+ + + + R LGY + Sbjct: 182 QIYESVWGK-EFIHDDNTVMVHISRLRNKIEEDPANPQRLQTVRGLGYRL 230 >gi|33355848|gb|AAQ16268.1| response regulator [Enterococcus faecalis] gi|77380195|gb|ABA71727.1| VanRG [Enterococcus faecalis] Length = 235 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 49/234 (20%), Positives = 92/234 (39%), Gaps = 16/234 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +DG + F + S + D++ ++ L Sbjct: 5 ILIVDDEKEIADLIELYLKNDGYKVYKFYNGIDALKCVESEKMDLAILDVML--PDVDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + IR P+I ++ + G DD + KP + E+ ARV RR Sbjct: 63 HICQKIRERYFYPIIMLTAKVEDADKIMGLTIGADDYITKPFNPLEVAARVKTQLRRYVC 122 Query: 122 SNN------------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 NN + + + + + G+ L E +L YL NRGK ++ Sbjct: 123 YNNAADIEKENVLVTEYDINGLVINKNTHKCTLYGKAVTLTPIEFSVLWYLCENRGKVIS 182 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 ++F ++G N V +HI +LR+KL+ + + +GY+I+ Sbjct: 183 SEELFENVWGEKFLD-NNNTVMAHIGRLREKLKEPARNPKFIKTVWGVGYTIEE 235 >gi|6862579|gb|AAD30119.2| DNA binding response regulator RpaB [Tolypothrix sp. PCC 7601] Length = 233 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 46/225 (20%), Positives = 87/225 (38%), Gaps = 11/225 (4%) Query: 5 IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64 +DD A ++ G + E A D+ ++ + Sbjct: 2 VDDEASIRRILETRLSMIGYDVVTAGDGEEALETFRKADPDLVVLDVM--MPKLDGYGVC 59 Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAAIYR 117 + +R S VP+I ++ + + + G DD V KP +E+ RV Sbjct: 60 QELRKESDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRRVDKTSA 119 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 S+ I++ ++ R E L E +LE L++ G+ ++++I + Sbjct: 120 SGIPSSGVIHVANIKIDTNKRQVYKGDERIRLTGMEFSLLELLVSRSGEAFSRSEILQEV 179 Query: 178 YG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 +G + V+ VV+ HIS+LR KL + + + + R GY Sbjct: 180 WGYTPERHVDTRVVDVHISRLRAKLEDDPSNPELILTARGTGYLF 224 >gi|295702506|ref|YP_003595581.1| two-component response regulator [Bacillus megaterium DSM 319] gi|294800165|gb|ADF37231.1| two-component response regulator [Bacillus megaterium DSM 319] Length = 230 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 43/226 (19%), Positives = 89/226 (39%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G + D+ ++ L L Sbjct: 6 ILIVEDERKIARLIQLELEHEGYETGMAYTGTEGLAEFQEHDWDLLLLDVML--PELSGL 63 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R IRA+ P+I ++ +L + D G +D + KP E+ AR+ R Sbjct: 64 EVLRRIRANDDQTPVILLTARDALPDKVSGLDLGANDYITKPFQIEELFARIRVWLRHPA 123 Query: 121 VSNNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 ++ + R+ + E L +E +L Y++ N+ + ++ Q+ Sbjct: 124 STSTAEQETATLQLGNLVVNEKTREVTRENEAIELTPKEYDLLVYMLQNKNQVLSFEQLL 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + ++G FD + N+V +I LRKK+ + + R +GY + Sbjct: 184 TNVWG-FDYYGDTNIVYVYIRYLRKKIDASFSTPYIQTVRGVGYML 228 >gi|253730033|ref|ZP_04864198.1| hemin DNA-binding response regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253734222|ref|ZP_04868387.1| hemin DNA-binding response regulator [Staphylococcus aureus subsp. aureus TCH130] gi|297209820|ref|ZP_06926216.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300910832|ref|ZP_07128282.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus TCH70] gi|304379557|ref|ZP_07362290.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|253726246|gb|EES94975.1| hemin DNA-binding response regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253727917|gb|EES96646.1| hemin DNA-binding response regulator [Staphylococcus aureus subsp. aureus TCH130] gi|296885493|gb|EFH24430.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300887812|gb|EFK83007.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus TCH70] gi|304341733|gb|EFM07639.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|320139067|gb|EFW30949.1| response regulator receiver domain protein [Staphylococcus aureus subsp. aureus MRSA131] gi|320142555|gb|EFW34364.1| response regulator receiver domain protein [Staphylococcus aureus subsp. aureus MRSA177] Length = 233 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 49/220 (22%), Positives = 99/220 (45%), Gaps = 4/220 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + + + + S E L R D++ ++ G + Sbjct: 14 LVVDDDPRILNYIASHLQTEHIDAYTQPSGEAALKLLEKQRVDIAVVDIM--MDGMDGFQ 71 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L ++ +P+I ++ +L F SG DD V KP +E++ R+ A+ RR ++ Sbjct: 72 LCNTLKNDYDIPVIMLTARDALSDKERAFISGTDDYVTKPFEVKELIFRIRAVLRRYNIN 131 Query: 123 NNRAETGPIRVFSDGR-DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 +N T + + +V + LP +E ++L L A + + QI I+G + Sbjct: 132 SNSEMTIGNLTLNQSYLELQVSNKTMTLPNKEFQLLFMLAARPKQIFTREQIIEKIWG-Y 190 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D +E V+ HI +LR++L+ +++ R GY ++ Sbjct: 191 DYEGDERTVDVHIKRLRQRLKKLNATLTIETVRGQGYKVE 230 >gi|254418732|ref|ZP_05032456.1| response regulator receiver domain protein [Brevundimonas sp. BAL3] gi|196184909|gb|EDX79885.1| response regulator receiver domain protein [Brevundimonas sp. BAL3] Length = 240 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 49/223 (21%), Positives = 90/223 (40%), Gaps = 8/223 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD ++D G++ E + R ++ ++ +E Sbjct: 9 LVVDDDPHIRDLLTFALQKAGLATREAADGEAALADIALYRPNLVVLDIN--MPRMDGIE 66 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 R IRA +P++ +S + + G DD V KP RE++ARVAAI RR+ + Sbjct: 67 ACRRIRAQGDLPVLFLSSRDDEIDRILGMELGADDYVTKPFSPREVVARVAAILRRIARN 126 Query: 123 NNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 G +DG + PL E I+ L + + I + Sbjct: 127 PPPPTPGQFAFGGLGLDADGWRATWRDVEVPLTVTEFSIVRTLADAPRRVFTRDAIIDRV 186 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G A+ + ++SH+ LR K G D ++++ +GY + Sbjct: 187 HG-PGFAMTDRTIDSHVRNLRAKFAAVGGADVIETRPGIGYQL 228 >gi|169826231|ref|YP_001696389.1| DNA-binding response regulator [Lysinibacillus sphaericus C3-41] gi|168990719|gb|ACA38259.1| DNA-binding response regulator [Lysinibacillus sphaericus C3-41] Length = 223 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 41/221 (18%), Positives = 91/221 (41%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +G + + + L + D++ ++ G Sbjct: 3 ILVVDDDVHILQLVNIYLTREGYQVLRAENAQQALALLNGNLPDLAVVDVM--MPGMDGF 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L + +P++ ++ L+ F +G DD V KP +E+L R+AAI RR+ Sbjct: 61 TLTETLTQDYDIPVLLLTAKGELEDKERGFLAGSDDYVVKPFEPKELLFRIAAILRRMDK 120 Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 N + + + E LP +E +L L + + ++ I ++G Sbjct: 121 KNQITIQVGQLVIDRRSFEVIIGEETLILPLKEFELLALLASRPNQVFTRSYIMEQVWG- 179 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +D +E + +H+ ++R++L + + R +GY ++ Sbjct: 180 YDYDGDEQTLNTHVKRVRERLNRFDTAVEIITVRGVGYKLE 220 >gi|115377125|ref|ZP_01464339.1| response regulator phoP1 [Stigmatella aurantiaca DW4/3-1] gi|310822859|ref|YP_003955217.1| DNA-binding response regulator PhoP1 [Stigmatella aurantiaca DW4/3-1] gi|115365834|gb|EAU64855.1| response regulator phoP1 [Stigmatella aurantiaca DW4/3-1] gi|309395931|gb|ADO73390.1| DNA-binding response regulator PhoP1 [Stigmatella aurantiaca DW4/3-1] Length = 226 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 91/224 (40%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++I+D + G E NS + D+ ++ L G +V Sbjct: 4 ILIIEDEQDLAGLIEYNLRAAGFDPEVANSGAGGLAKARTRLPDLVLLDLMLPDISGHEV 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117 L + + P++ +S + + G DD V KP RE++ RV Sbjct: 64 LRMLKNDPGLRAAPVVIVSAKGQEADRIQGLEMGADDYVVKPFSVRELMLRVKAVLRRAD 123 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + + G I++ + V+GE L E R+L L+ G+ + + S + Sbjct: 124 ADEGPSTQLTAGEIQLDTSRHQVRVKGEEVVLTALEFRLLHTLLERGGRVQTREVLLSDV 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +G+ + V++HI +LR+KL D +++ R +GY ++ Sbjct: 184 WGI-QAEIHTRTVDTHIKRLREKLGPAG--DIIETVRGVGYKLN 224 >gi|298244230|ref|ZP_06968036.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297551711|gb|EFH85576.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 234 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 42/223 (18%), Positives = 81/223 (36%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V +G + ++ E L + R DV ++ L G L Sbjct: 11 ILIVDDETRVTSALRRSLAYEGYQVSSASNGEIALELARTRRPDVVILDIML--PGMNGL 68 Query: 62 ELPRIIRAHSQVPLI-GISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYR 117 E+ R + P I ++ ++ + + G DD + KP E + + + Sbjct: 69 EVCRCLHQTQATPAILMLTARDTVADRVTGLEMGADDYLVKPFALEELLARVKALLRRKQ 128 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 +V + + + R + L E +L + N + + + I Sbjct: 129 PTEVHGELLCFADLELDTATRQAHRGQRMIDLSTTEYELLTLFLRNPRVVLTRGLLMERI 188 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G D NV+E +I LR KL + + + R GY + Sbjct: 189 WGN-DFEGSPNVLEVYIGHLRNKLEREGEQRLLQTIRGTGYVL 230 >gi|291439275|ref|ZP_06578665.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291342170|gb|EFE69126.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 229 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 43/219 (19%), Positives = 89/219 (40%), Gaps = 5/219 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + + + +G + + D+ ++ L G +E Sbjct: 10 LVVDDDSALAEMLGIVLRGEGFEPSFVADGDKALAAFRETKPDLVLLDLML--PGRDGIE 67 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R+IRA S VP++ ++ + +SG DD + KP +E++AR+ A RR + Sbjct: 68 VCRLIRAESGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEEP 127 Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + G + G+ L E +L L + + + ++G + Sbjct: 128 APEQLAIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWG-Y 186 Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219 A + +V H+ +LR K+ + V + R +GY Sbjct: 187 RHAADTRLVNVHVQRLRSKVEKDPEKPEIVVTVRGVGYK 225 >gi|254518597|ref|ZP_05130653.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA] gi|226912346|gb|EEH97547.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA] Length = 228 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 47/222 (21%), Positives = 95/222 (42%), Gaps = 7/222 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D ++ F +G ++ + S + D+ ++ + Sbjct: 9 ILLIEDETRIRFLLRDYFLKEGFNIIEAADGDEGLNFFISNKIDLVILDIM--MPKVDGI 66 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119 + +IR S VP+I ++ + L ++ G DD + KP + ++A+V A Sbjct: 67 TVLEMIRKVSTVPVILLTAKGQEEDKLFGYEMGADDYITKPFSPKILIAKVKALLKRTSE 126 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + E + + + +V E+ L +E +L YL N G +++ I ++G Sbjct: 127 DTFSGLNEYDGLTINKLSHEVKVNNEIINLSPKEFELLSYLSDNEGIALSRDTILDNVWG 186 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 L D + V+++I +LR+KL NK + + R GY + Sbjct: 187 L-DYYGDLRTVDTNIKRLREKLGNKAS--YIVTVRGSGYRFE 225 >gi|21223649|ref|NP_629428.1| two-component system response regulator [Streptomyces coelicolor A3(2)] gi|256785237|ref|ZP_05523668.1| two-component system response regulator [Streptomyces lividans TK24] gi|289769129|ref|ZP_06528507.1| two-component system response regulator [Streptomyces lividans TK24] gi|9909919|emb|CAC04498.1| putative two-component system response regulator [Streptomyces coelicolor A3(2)] gi|289699328|gb|EFD66757.1| two-component system response regulator [Streptomyces lividans TK24] Length = 244 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 46/227 (20%), Positives = 93/227 (40%), Gaps = 15/227 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + D +G ++ + + D+ ++ L G LE Sbjct: 21 LVVEDDQTIVDAIATRLRAEGFLVQTAGDGPSAVDTAEAWQPDLLILDIML--PGFDGLE 78 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R ++A VP++ ++ L G DD + KP RE+ ARV + RR++ + Sbjct: 79 VCRRVQAQRPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRVERA 138 Query: 123 NNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 A T + R V+ E L E +L L +++ Q+ Sbjct: 139 VVAASTPRSGILRLGELEIDHAQRRVRVRSEDVHLTPTEFDLLVCLANTPRAVLSREQLL 198 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + ++ D + V+SHI LR+K+ G + + + +GY+++ Sbjct: 199 AEVWDWADASG-TRTVDSHIKALRRKI----GAERIRTVHGVGYALE 240 >gi|67923615|ref|ZP_00517086.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Crocosphaera watsonii WH 8501] gi|67854539|gb|EAM49827.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Crocosphaera watsonii WH 8501] Length = 252 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 49/234 (20%), Positives = 97/234 (41%), Gaps = 18/234 (7%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA---------REDVSAIEAF 52 ++++D +++D + D+G + + L D+ ++ Sbjct: 21 ILVVEDEDVIRDMIVLALEDEGYEITAVSDGRTALNLLQQEAKNPTATAMEFDLLVLDLM 80 Query: 53 LIGKGEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111 L L++ R++R H +P++ +S S + + G DD + KP RE++AR Sbjct: 81 L--PQVNGLDICRLLRYHGNIIPILILSAKASETDRVLGLEVGADDYLTKPFSMRELVAR 138 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQ----GEVFPLPRRERRILEYLMANRGKR 167 A+ RR K +++ + + E + E L +E R+LE M+ + Sbjct: 139 CRALIRRQKFTSSSSSSVKQFRDITLYTQECRVTLAEEEINLSPKEYRLLELFMSYPRRV 198 Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++ Q+ I+G D + V+ HI LR+KL + + + R GY Sbjct: 199 WSRDQLIEQIWG-PDFLGDTKTVDVHIRWLREKLEQDPSQPQYLITVRGFGYRF 251 >gi|293401478|ref|ZP_06645621.1| DNA-binding response regulator [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305116|gb|EFE46362.1| DNA-binding response regulator [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 225 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 38/223 (17%), Positives = 89/223 (39%), Gaps = 4/223 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 + ++D + G + +G + S + L + D+ ++ L Sbjct: 3 ILFVEDDQAIALGLVYSLEKEGYEVIHCVSQKAALGLLEAQVFDLLLLDVSL--PDGDGY 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + + VP+I ++ + D G DD V KP +E+L+R+ ++ RR + Sbjct: 61 TICKQAKHLHDVPVIFLTALDDEVNVVMGLDLGGDDYVTKPFRIKELLSRIKSVLRRYQK 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPL-PRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + E R+L + ++G+ ++++Q+ I+ + Sbjct: 121 DALDIVQIQHLEIHIREGKVYREGSEVFLTALEYRLLMVFVNHQGQVLSRSQLLEGIWDV 180 Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 + V +N + +I +LR+KL + + + + R GY ++ Sbjct: 181 AGDFVNDNTLSVYIKRLREKLEKDAAEPEIIKTIRGRGYRMEK 223 >gi|302382814|ref|YP_003818637.1| PhoB family transcriptional regulator [Brevundimonas subvibrioides ATCC 15264] gi|302193442|gb|ADL01014.1| two component transcriptional regulator PhoB, winged helix family [Brevundimonas subvibrioides ATCC 15264] Length = 229 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 50/223 (22%), Positives = 98/223 (43%), Gaps = 4/223 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++++D + +G + E + D+ ++ L G +V Sbjct: 5 ILVMEDEDALATLLQYNLEKEGYDVVVAADGEEGLVQIDERQPDLVLLDWMLPKVSGIEV 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 R +P+I ++ + D+G DD + KP E++AR+ A+ RR++ Sbjct: 65 CRRLRGRPETRNLPVIMLTARGEESDRVRGLDTGADDYLTKPFSMTELIARIRAVLRRIR 124 Query: 121 V--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 +++R G I + G+ L E R+L++ M + G+ ++ Q+ A++ Sbjct: 125 PGLADDRVGHGDIVIDRVAHRVRRSGKEVHLGPTEFRLLDHFMRHPGRVFSREQLLDAVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 G D VE V+ H+ +LRK L + +P+ + R GYS+D Sbjct: 185 G-SDVYVEARTVDVHVGRLRKALNVEESANPIRTVRSAGYSLD 226 >gi|333008591|gb|EGK28059.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella flexneri VA-6] Length = 229 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 39/222 (17%), Positives = 93/222 (41%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++++D A +++ + +G + + D+ ++ L+G G + Sbjct: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLLGGSGIQF 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ + +P++ ++ + + ++G DD + KP +E++AR+ A+ RR+ Sbjct: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS 124 Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 E + + E + E ++L + M + + ++ Q+ + ++ Sbjct: 125 PMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G + VE+ V+ HI +LRK L V + R GY Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRF 225 >gi|297202340|ref|ZP_06919737.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] gi|197710140|gb|EDY54174.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] Length = 245 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 45/227 (19%), Positives = 93/227 (40%), Gaps = 15/227 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + D +G ++ + + D+ ++ L G LE Sbjct: 22 LVVEDDPTIVDAIATRLRAEGFLVQTAVDGPSAVDTAEAWQPDLLILDIML--PGFDGLE 79 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120 + R ++A VP++ ++ L G DD + KP RE+ ARV + RR++ Sbjct: 80 VCRRVQAARPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRVERA 139 Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + G + + R V+ E L E +L L +++ Q+ Sbjct: 140 ALAAATPRSGILRLGELEIDHAQRRVRVRSEDVHLTPTEFDLLVCLANTPRAVLSREQLL 199 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + ++ D + V+SHI LR+K+ G + + + +GY+++ Sbjct: 200 AEVWDWADASG-TRTVDSHIKALRRKI----GAERIRTVHGVGYALE 241 >gi|170769721|ref|ZP_02904174.1| DNA-binding response regulator BaeR [Escherichia albertii TW07627] gi|170121335|gb|EDS90266.1| DNA-binding response regulator BaeR [Escherichia albertii TW07627] Length = 240 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 46/224 (20%), Positives = 90/224 (40%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + I + + + D+ ++ L G L Sbjct: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYIRQTPPDLILLDLML--PGTDGL 70 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 L R IR S VP+I ++ L + G DD + KP RE++ARV + Sbjct: 71 TLCREIRRFSDVPIIMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + P+ + +G++ L E R+L+ L GK ++ Q+ + +Y Sbjct: 131 QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190 Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + V + ++SHI LR+KL + + + + +GY + Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLESLDVEQSFIRAVYGVGYRWE 233 >gi|239637303|ref|ZP_04678290.1| transcriptional regulatory protein [Staphylococcus warneri L37603] gi|239597140|gb|EEQ79650.1| transcriptional regulatory protein [Staphylococcus warneri L37603] gi|330685295|gb|EGG96956.1| transcriptional regulatory protein WalR [Staphylococcus epidermidis VCU121] Length = 233 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 46/224 (20%), Positives = 92/224 (41%), Gaps = 12/224 (5%) Query: 4 LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63 ++DD + D +G + L D+ ++ L G +E+ Sbjct: 7 VVDDEKPIADILEFNLKKEGYDVFCAYDGNDAVDLIYEEEPDIVLLDIML--PGRDGMEV 64 Query: 64 PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123 R +R ++P+I ++ S + + G DD V KP RE++ARV A RR Sbjct: 65 CREVRKKFEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYSQP 124 Query: 124 NRAETGPIR--------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + ++ D + +G+ L RE + YL + G+ + + + Sbjct: 125 AQEVNDATNEISIKDIVIYPDAYSIKKRGDDIELTHREFELFHYLSKHMGQVMTREHLLQ 184 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218 ++G +D + V+ I +LR+K+ + + + ++R +GY Sbjct: 185 TVWG-YDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGY 227 >gi|284028988|ref|YP_003378919.1| winged helix family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283808281|gb|ADB30120.1| two component transcriptional regulator, winged helix family [Kribbella flavida DSM 17836] Length = 225 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 50/223 (22%), Positives = 94/223 (42%), Gaps = 7/223 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D D + +G + + A D+ ++ L G E Sbjct: 5 LVVEDEESYSDALSYVLRKEGFEVAVAETGPDALDEYDRAGADIVLLDLML--PGLSGTE 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRRL 119 + R +R VP+I +S + + + G DD V KP RE + V + + Sbjct: 63 VCRALRTRGNVPVIIVSAKDTEVDKVVGLELGADDYVTKPYSPRELLARIKAVLRRGQDV 122 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++ + E GP+R+ + V G LP +E +LE L+ N G+ + + Q+ I+G Sbjct: 123 ELLPDTLEAGPVRMDVERHVVTVSGTEIRLPLKEFELLEMLLRNTGRVLTRGQLIDRIWG 182 Query: 180 LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 D + ++ H+ +LR KL + + + R LGY + Sbjct: 183 A-DYVGDTKTLDVHVKRLRSKLEKDPSNPAHLVTVRGLGYKFE 224 >gi|192361393|ref|YP_001980674.1| phosphate regulon transcriptional regulatory protein PhoB [Cellvibrio japonicus Ueda107] gi|190687558|gb|ACE85236.1| phosphate regulon transcriptional regulatory protein PhoB [Cellvibrio japonicus Ueda107] Length = 232 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 43/224 (19%), Positives = 91/224 (40%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + ++D + + L + D+ ++ G + Sbjct: 6 ILIVDDESAIRDMLRVALEMADYQCIEAGNAQDAHSLIIDEKPDLILLDWM--MPGTSGI 63 Query: 62 ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IY 116 EL R ++ + +P+I ++ + + G DD + KP RE++AR+ A Sbjct: 64 ELARRLKRDEVTANLPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 V++ + + + + + E R+LE+ + ++ + ++Q+ Sbjct: 124 ADPHVNSAPIIVQGLCLDPASHRVTINNQSVDMGPTEYRLLEFFLTHQERAYTRSQLLDH 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + VEE V+ HI +LRK L D V + R GY Sbjct: 184 VWG-GNVYVEERTVDVHIRRLRKALAIDGHEDLVQTVRGTGYRF 226 >gi|297584935|ref|YP_003700715.1| winged helix family two component transcriptional regulator [Bacillus selenitireducens MLS10] gi|297143392|gb|ADI00150.1| two component transcriptional regulator, winged helix family [Bacillus selenitireducens MLS10] Length = 236 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 41/233 (17%), Positives = 86/233 (36%), Gaps = 15/233 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +++DD ++ +G + +L D+ ++ L Sbjct: 5 ILVVDDEMDLRVLLKEALKQEGYTEVVTAANLSEAWDQFILIEPDLIILDIML--PDGNG 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L+ IR HS VP++ +S L G DD V KP +E++ RV + RR Sbjct: 63 LDFCAKIRGHSTVPILFLSAKSDEVDKLLALSLGGDDYVTKPFSPKEVVYRVKSQLRRAG 122 Query: 121 VSNNRAETG----------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + P + D + + + L +E +L + +G+ +++ Sbjct: 123 TYAKQDTARSGESRILKAGPFTMNEDETEMYLHDQPLDLTAKEAGLLACFIRRQGQIISQ 182 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDW 222 ++ ++ N + HI +LR+K+ + + + LGY ++ Sbjct: 183 ETLYETVWNES-YFGAANTLMVHIRRLREKVEENPSSPVLIKTVKGLGYRLNV 234 >gi|116617476|ref|YP_817847.1| DNA-binding response regulator [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|227432676|ref|ZP_03914649.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|116096323|gb|ABJ61474.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|227351558|gb|EEJ41811.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 230 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 41/229 (17%), Positives = 92/229 (40%), Gaps = 9/229 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + ++G + + ++ D++ + ++ L Sbjct: 3 ILVVDDDIEIAELLEIYLKNEGYEPIMADDGKEALSKLNTN-PDIALMILDVMMPNMNGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + +R S++P++ +S + +G DD V KP + E++ARV ++ RR + Sbjct: 62 DVVKTVRKDSRIPILMLSAKSGDMDKIQGLITGADDYVTKPFNPLEVMARVRSLLRRAEN 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF------PLPRRERRILEYLMANRGKRVAKTQIFS 175 + + + S + + L E IL L ++ + + IF Sbjct: 122 AVQDQTPDVLDIGSLIINKDSHEVKTSTGDLVNLTALEFGILYLLASHPNRVFSADDIFE 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223 ++ + V V H+S LR K+ G + + +GY I+ N Sbjct: 182 RVW-QQESVVSAKTVMVHVSHLRDKIEEATNGDQVIQTVWGVGYKIEVN 229 >gi|310658178|ref|YP_003935899.1| DNA-binding response regulator in two-component regulatory system with baes [Clostridium sticklandii DSM 519] gi|308824956|emb|CBH20994.1| DNA-binding response regulator in two-component regulatory system with BaeS [Clostridium sticklandii] Length = 227 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 55/226 (24%), Positives = 97/226 (42%), Gaps = 7/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++DD ++D +G + F S + D+ ++ + G L Sbjct: 4 IFIVDDEKRIRDLIEMYLKKEGYNTTTFESADGVLSAIREFMPDLLVLDIMMQ--GLDGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 +L + IR S+VP+I +S + + G DD + KP RE++ R+ I +R Sbjct: 62 DLCKEIRKISEVPIIFVSARSDELDRILGLELGADDYLAKPFSPRELVVRIKTILKRTTK 121 Query: 122 SNNRAETGPIRVF----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 S+ + R + G+ PL +E +LE+LM N +++ QI +I Sbjct: 122 SSEHNDEILKTKDLEIYVQRRIVKCMGQDIPLTIKEYEVLEFLMKNINLPLSREQIIESI 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 +G +D + V+ I +LRKKL+ + + GY ID N Sbjct: 182 WG-YDYDGYDRNVDDTIKRLRKKLKTAKSRVVIKTVWGYGYRIDDN 226 >gi|300936615|ref|ZP_07151519.1| response regulator receiver domain protein [Escherichia coli MS 21-1] gi|300458196|gb|EFK21689.1| response regulator receiver domain protein [Escherichia coli MS 21-1] gi|323968214|gb|EGB63623.1| response regulator receiver domain-containing protein [Escherichia coli M863] gi|323977760|gb|EGB72846.1| response regulator receiver domain-containing protein [Escherichia coli TW10509] gi|324114498|gb|EGC08467.1| response regulator receiver domain-containing protein [Escherichia fergusonii B253] gi|325497900|gb|EGC95759.1| DNA-binding transcriptional regulator BaeR [Escherichia fergusonii ECD227] gi|327253212|gb|EGE64866.1| transcriptional regulatory protein baeR [Escherichia coli STEC_7v] Length = 240 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 44/224 (19%), Positives = 88/224 (39%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + I + + + D+ ++ L G L Sbjct: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLML--PGTDGL 70 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 L R IR S +P++ ++ L + G DD + KP RE++ARV + Sbjct: 71 TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + P+ + +G++ L E R+L+ L GK ++ Q+ + +Y Sbjct: 131 QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190 Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + V + ++SHI LR+KL + + +GY + Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLEALDEEQSFIRAVYGVGYRWE 233 >gi|295695240|ref|YP_003588478.1| two component transcriptional regulator, winged helix family [Bacillus tusciae DSM 2912] gi|295410842|gb|ADG05334.1| two component transcriptional regulator, winged helix family [Bacillus tusciae DSM 2912] Length = 236 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 44/222 (19%), Positives = 93/222 (41%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 V++DD ++ G + E ++ + D+ ++ L + Sbjct: 7 IVIVDDEPQIRKFLRVSLRAHGYETLEAETGEDGLRQVTAGKPDLVILDLGL--PDMRGA 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119 ++ R IR S VP+I +S + + D+G DD + KP E+ RVA + Sbjct: 65 DVLRAIREWSSVPVIILSVQEQEEEKIRALDAGADDYITKPFGMGELLARIRVALRHSAK 124 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + G +R+ R+ V G+ L E +L+ L ++ G+ + Q+ A++G Sbjct: 125 ASGDPVIKLGTLRIDLGTREVTVGGQAVKLTPTEYELLKALASHPGRVMTHRQLLKAVWG 184 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 + + + +I +LR+K+ + ++ +GY + Sbjct: 185 SG-YEQDIHSLRVYIGQLRRKIEEDPARPRWIVTEPGVGYRL 225 >gi|15923008|ref|NP_370542.1| response regulator [Staphylococcus aureus subsp. aureus Mu50] gi|15925723|ref|NP_373256.1| response regulator [Staphylococcus aureus subsp. aureus N315] gi|49482271|ref|YP_039495.1| response regulator protein [Staphylococcus aureus subsp. aureus MRSA252] gi|49484930|ref|YP_042151.1| response regulator protein [Staphylococcus aureus subsp. aureus MSSA476] gi|82749795|ref|YP_415536.1| two-component response regulator [Staphylococcus aureus RF122] gi|151220229|ref|YP_001331052.1| response regulator protein [Staphylococcus aureus subsp. aureus str. Newman] gi|156978349|ref|YP_001440608.1| response regulator [Staphylococcus aureus subsp. aureus Mu3] gi|161508284|ref|YP_001573943.1| response regulator VicR [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253730418|ref|ZP_04864583.1| response regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253733821|ref|ZP_04867986.1| response regulator [Staphylococcus aureus subsp. aureus TCH130] gi|257424214|ref|ZP_05600643.1| response regulator protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257426891|ref|ZP_05603293.1| response regulator [Staphylococcus aureus subsp. aureus 65-1322] gi|257429527|ref|ZP_05605914.1| response regulator protein [Staphylococcus aureus subsp. aureus 68-397] gi|257432174|ref|ZP_05608537.1| response regulator protein [Staphylococcus aureus subsp. aureus E1410] gi|257435135|ref|ZP_05611186.1| two-component system response regulator [Staphylococcus aureus subsp. aureus M876] gi|257793556|ref|ZP_05642535.1| response regulator protein [Staphylococcus aureus A9781] gi|258411138|ref|ZP_05681417.1| two-component system response regulator [Staphylococcus aureus A9763] gi|258420958|ref|ZP_05683892.1| response regulator protein [Staphylococcus aureus A9719] gi|258423220|ref|ZP_05686112.1| response regulator VicR [Staphylococcus aureus A9635] gi|258438597|ref|ZP_05689820.1| response regulator VicR [Staphylococcus aureus A9299] gi|258443947|ref|ZP_05692285.1| response regulator protein [Staphylococcus aureus A8115] gi|258446237|ref|ZP_05694397.1| response regulator protein [Staphylococcus aureus A6300] gi|258449104|ref|ZP_05697210.1| response regulator [Staphylococcus aureus A6224] gi|258451349|ref|ZP_05699380.1| response regulator [Staphylococcus aureus A5948] gi|258454418|ref|ZP_05702386.1| response regulator protein [Staphylococcus aureus A5937] gi|262049448|ref|ZP_06022320.1| response regulator [Staphylococcus aureus D30] gi|262051885|ref|ZP_06024100.1| response regulator [Staphylococcus aureus 930918-3] gi|282894297|ref|ZP_06302527.1| two-component system, OmpR family, response regulator VicR [Staphylococcus aureus A8117] gi|282902649|ref|ZP_06310542.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp. aureus C160] gi|282907065|ref|ZP_06314913.1| two-component system OmpR family response regulator VicR [Staphylococcus aureus subsp. aureus Btn1260] gi|282910044|ref|ZP_06317852.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WW2703/97] gi|282912292|ref|ZP_06320088.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WBG10049] gi|282912932|ref|ZP_06320724.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp. aureus M899] gi|282918086|ref|ZP_06325836.1| two-component system, OmpR family, response regulator VicR [Staphylococcus aureus subsp. aureus D139] gi|282920737|ref|ZP_06328456.1| two-component system, OmpR family, response regulator VicR [Staphylococcus aureus A9765] gi|282921308|ref|ZP_06329026.1| two-component response regulator [Staphylococcus aureus subsp. aureus C427] gi|282922560|ref|ZP_06330250.1| two-component system, OmpR family, response regulator VicR [Staphylococcus aureus subsp. aureus C101] gi|282927768|ref|ZP_06335382.1| two-component system, OmpR family, response regulator VicR [Staphylococcus aureus A10102] gi|283767808|ref|ZP_06340723.1| two-component system OmpR family response regulator VicR [Staphylococcus aureus subsp. aureus H19] gi|283959502|ref|ZP_06376943.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp. aureus A017934/97] gi|293497985|ref|ZP_06665839.1| two-component system, OmpR family, response regulator VicR [Staphylococcus aureus subsp. aureus 58-424] gi|293511575|ref|ZP_06670269.1| transcriptional regulatory protein walR [Staphylococcus aureus subsp. aureus M809] gi|293550184|ref|ZP_06672856.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp. aureus M1015] gi|295429315|ref|ZP_06821937.1| two-component system response regulator [Staphylococcus aureus subsp. aureus EMRSA16] gi|297209434|ref|ZP_06925832.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297245917|ref|ZP_06929779.1| two-component system [Staphylococcus aureus A8796] gi|297589183|ref|ZP_06947824.1| response regulator [Staphylococcus aureus subsp. aureus MN8] gi|300911458|ref|ZP_07128907.1| response regulator [Staphylococcus aureus subsp. aureus TCH70] gi|304379966|ref|ZP_07362695.1| response regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|13699935|dbj|BAB41234.1| response regulator [Staphylococcus aureus subsp. aureus N315] gi|14245785|dbj|BAB56180.1| response regulator [Staphylococcus aureus subsp. aureus Mu50] gi|49240400|emb|CAG39046.1| response regulator protein [Staphylococcus aureus subsp. aureus MRSA252] gi|49243373|emb|CAG41790.1| response regulator protein [Staphylococcus aureus subsp. aureus MSSA476] gi|82655326|emb|CAI79706.1| two-component response regulator [Staphylococcus aureus RF122] gi|150373029|dbj|BAF66289.1| response regulator protein [Staphylococcus aureus subsp. aureus str. Newman] gi|156720484|dbj|BAF76901.1| response regulator [Staphylococcus aureus subsp. aureus Mu3] gi|160367093|gb|ABX28064.1| response regulator VicR [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253725898|gb|EES94627.1| response regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253728124|gb|EES96853.1| response regulator [Staphylococcus aureus subsp. aureus TCH130] gi|257273232|gb|EEV05334.1| response regulator protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257276522|gb|EEV07973.1| response regulator [Staphylococcus aureus subsp. aureus 65-1322] gi|257280008|gb|EEV10595.1| response regulator protein [Staphylococcus aureus subsp. aureus 68-397] gi|257283053|gb|EEV13185.1| response regulator protein [Staphylococcus aureus subsp. aureus E1410] gi|257285731|gb|EEV15847.1| two-component system response regulator [Staphylococcus aureus subsp. aureus M876] gi|257787528|gb|EEV25868.1| response regulator protein [Staphylococcus aureus A9781] gi|257840023|gb|EEV64488.1| two-component system response regulator [Staphylococcus aureus A9763] gi|257843148|gb|EEV67563.1| response regulator protein [Staphylococcus aureus A9719] gi|257846549|gb|EEV70571.1| response regulator VicR [Staphylococcus aureus A9635] gi|257848156|gb|EEV72148.1| response regulator VicR [Staphylococcus aureus A9299] gi|257850831|gb|EEV74775.1| response regulator protein [Staphylococcus aureus A8115] gi|257855063|gb|EEV78006.1| response regulator protein [Staphylococcus aureus A6300] gi|257857537|gb|EEV80432.1| response regulator [Staphylococcus aureus A6224] gi|257860879|gb|EEV83696.1| response regulator [Staphylococcus aureus A5948] gi|257863512|gb|EEV86272.1| response regulator protein [Staphylococcus aureus A5937] gi|259160212|gb|EEW45241.1| response regulator [Staphylococcus aureus 930918-3] gi|259162445|gb|EEW47015.1| response regulator [Staphylococcus aureus D30] gi|269939544|emb|CBI47902.1| transcriptional regulatory protein WalR [Staphylococcus aureus subsp. aureus TW20] gi|282314781|gb|EFB45167.1| two-component system, OmpR family, response regulator VicR [Staphylococcus aureus subsp. aureus C101] gi|282315723|gb|EFB46107.1| two-component response regulator [Staphylococcus aureus subsp. aureus C427] gi|282318371|gb|EFB48731.1| two-component system, OmpR family, response regulator VicR [Staphylococcus aureus subsp. aureus D139] gi|282323032|gb|EFB53351.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp. aureus M899] gi|282323988|gb|EFB54304.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WBG10049] gi|282326110|gb|EFB56415.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WW2703/97] gi|282329964|gb|EFB59485.1| two-component system OmpR family response regulator VicR [Staphylococcus aureus subsp. aureus Btn1260] gi|282590528|gb|EFB95606.1| two-component system, OmpR family, response regulator VicR [Staphylococcus aureus A10102] gi|282594145|gb|EFB99133.1| two-component system, OmpR family, response regulator VicR [Staphylococcus aureus A9765] gi|282597108|gb|EFC02067.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp. aureus C160] gi|282763342|gb|EFC03472.1| two-component system, OmpR family, response regulator VicR [Staphylococcus aureus A8117] gi|283461687|gb|EFC08771.1| two-component system OmpR family response regulator VicR [Staphylococcus aureus subsp. aureus H19] gi|283469247|emb|CAQ48458.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Staphylococcus aureus subsp. aureus ST398] gi|283789094|gb|EFC27921.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp. aureus A017934/97] gi|285815745|gb|ADC36232.1| Two-component response regulator [Staphylococcus aureus 04-02981] gi|290919231|gb|EFD96307.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp. aureus M1015] gi|291096916|gb|EFE27174.1| two-component system, OmpR family, response regulator VicR [Staphylococcus aureus subsp. aureus 58-424] gi|291465533|gb|EFF08065.1| transcriptional regulatory protein walR [Staphylococcus aureus subsp. aureus M809] gi|295127074|gb|EFG56718.1| two-component system response regulator [Staphylococcus aureus subsp. aureus EMRSA16] gi|296885895|gb|EFH24830.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297177282|gb|EFH36535.1| two-component system [Staphylococcus aureus A8796] gi|297577694|gb|EFH96407.1| response regulator [Staphylococcus aureus subsp. aureus MN8] gi|300887637|gb|EFK82833.1| response regulator [Staphylococcus aureus subsp. aureus TCH70] gi|304341546|gb|EFM07456.1| response regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312436841|gb|ADQ75912.1| response regulator [Staphylococcus aureus subsp. aureus TCH60] gi|320141436|gb|EFW33279.1| response regulator receiver domain protein [Staphylococcus aureus subsp. aureus MRSA131] gi|320144418|gb|EFW36183.1| response regulator receiver domain protein [Staphylococcus aureus subsp. aureus MRSA177] gi|323440407|gb|EGA98120.1| two-component response regulator [Staphylococcus aureus O11] gi|323443113|gb|EGB00732.1| two-component response regulator [Staphylococcus aureus O46] gi|329312742|gb|AEB87155.1| Transcriptional regulatory protein walR [Staphylococcus aureus subsp. aureus T0131] gi|329725706|gb|EGG62185.1| transcriptional regulatory protein WalR [Staphylococcus aureus subsp. aureus 21172] gi|329732312|gb|EGG68662.1| transcriptional regulatory protein WalR [Staphylococcus aureus subsp. aureus 21193] Length = 235 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 49/224 (21%), Positives = 93/224 (41%), Gaps = 12/224 (5%) Query: 4 LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63 ++DD + D +G + L D+ ++ L G +E+ Sbjct: 9 VVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIML--PGRDGMEV 66 Query: 64 PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123 R +R ++P+I ++ S + + G DD V KP RE++ARV A RR Sbjct: 67 CREVRKKYEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYSQP 126 Query: 124 --------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 N I ++ D + +GE L RE + YL + G+ + + + Sbjct: 127 AQDTGNVTNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHLLQ 186 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218 ++G +D + V+ I +LR+K+ + + + ++R +GY Sbjct: 187 TVWG-YDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGY 229 >gi|302190752|ref|ZP_07267006.1| two-component regulatory system response regulator [Lactobacillus iners AB-1] gi|309809744|ref|ZP_07703598.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners SPIN 2503V10-D] gi|329919797|ref|ZP_08276748.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners SPIN 1401G] gi|308169923|gb|EFO71962.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners SPIN 2503V10-D] gi|328937144|gb|EGG33572.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners SPIN 1401G] Length = 234 Score = 145 bits (365), Expect = 6e-33, Method: Composition-based stats. Identities = 42/225 (18%), Positives = 87/225 (38%), Gaps = 11/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G ++ E D+ ++ L + L Sbjct: 5 ILIVDDEKTISDIIKFNLTKEGYEVDTAYDGEEAVKKVDEFNPDLMILDLML--PKKDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-------ILARVAA 114 E+ R +R + +I ++ + + + G DD V KP +RE L R Sbjct: 63 EVAREVRQSHDLSIIMVTAKAAEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRREI 122 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + N G + + + E G L RE +L YL + G+ + + + Sbjct: 123 TQKSKPDENANITIGNLVIMPEAYIVEKAGTNIELTHREFELLRYLAQHMGQVMTREHLL 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGY 218 ++G +D + V+ + +LR+K+ + + ++R +GY Sbjct: 183 QTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSTPSILVTRRGVGY 226 >gi|239982264|ref|ZP_04704788.1| putative two-component system response regulator [Streptomyces albus J1074] Length = 225 Score = 145 bits (365), Expect = 6e-33, Method: Composition-based stats. Identities = 46/227 (20%), Positives = 93/227 (40%), Gaps = 15/227 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + + A +G ++ + + D+ ++ L G LE Sbjct: 2 LVVEDDTTIVEAISARLRAEGFLVQTATDGPAAVDTAEAWQPDLLILDIML--PGFDGLE 59 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R ++A VP++ ++ L G DD + KP RE+ ARV + RR++ + Sbjct: 60 VCRRVQAQRPVPVMMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRVERA 119 Query: 123 NNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 A T + R V E L E +L L +++ Q+ Sbjct: 120 ALAAATPRSGILRLGELEIDHAQRRVRVHAEDVHLTPTEFDLLVCLANTPRAVLSREQLL 179 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + ++ D + V+SHI LR+K+ G + + + +GY+++ Sbjct: 180 AEVWDWADASG-TRTVDSHIKALRRKI----GAERIRTVHGVGYALE 221 >gi|283798612|ref|ZP_06347765.1| DNA-binding response regulator ResD [Clostridium sp. M62/1] gi|291073596|gb|EFE10960.1| DNA-binding response regulator ResD [Clostridium sp. M62/1] gi|295090640|emb|CBK76747.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Clostridium cf. saccharolyticum K10] Length = 229 Score = 145 bits (365), Expect = 6e-33, Method: Composition-based stats. Identities = 47/227 (20%), Positives = 86/227 (37%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G +E ++ E D+ ++ L G Sbjct: 4 ILIVEDEEAIAELEKDYLELSGFEVEIEDNGETGLKRALEEDFDLLILDLML--PGVDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 E+ R +R P+I +S + G DD + KP E++ARV A R Sbjct: 62 EICRKVREAKNTPIIMVSAKKDDIDKIRGLGLGADDYITKPFSPSEMVARVKAHMARYER 121 Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N E +++ R V GE +E +L +L N K ++F Sbjct: 122 LIGSGMPENEIIEIRGLKIDKTARRVYVNGEEKNFTTKEFDLLTFLAQNPNHVFTKEELF 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 S I+ + + + V HI K+R+K+ N +++ +GY Sbjct: 182 SRIWDM-ESLGDIATVTVHIKKIREKIEFNTAKPQYIETIWGVGYRF 227 >gi|220928585|ref|YP_002505494.1| transcriptional regulator [Clostridium cellulolyticum H10] gi|219998913|gb|ACL75514.1| two component transcriptional regulator, winged helix family [Clostridium cellulolyticum H10] Length = 233 Score = 145 bits (365), Expect = 6e-33, Method: Composition-based stats. Identities = 42/227 (18%), Positives = 80/227 (35%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G + + + ++ L G Sbjct: 7 ILIVEDDREINRLIADNLVKEGYCAISTHDGAAAVEKLRADEFQLVILDIMLPKVG--GY 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-------A 114 E+ + IR P++ +S + G DD + KP E+ ARV Sbjct: 65 EVLQKIREKGNTPVLILSAKCEETDKIIGLGLGADDYLAKPFGIGELTARVKAQLRRYLN 124 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 I + D + +V L +E IL+ + N K K Q+F Sbjct: 125 FSWETDKRTQIIRHMNIEMNVDTYEVKVGDNSVTLTAKEFEILKLFLQNPRKVFTKNQLF 184 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 +I+G + +EN V HI +LR+K+ + + + +GY + Sbjct: 185 KSIWGE-NYINDENTVMVHIRRLREKIEKDPSNPSYIQTIWGIGYKL 230 >gi|238752749|ref|ZP_04614218.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia rohdei ATCC 43380] gi|238709007|gb|EEQ01256.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia rohdei ATCC 43380] Length = 239 Score = 145 bits (365), Expect = 6e-33, Method: Composition-based stats. Identities = 38/224 (16%), Positives = 91/224 (40%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A +++ + +G + S D+ ++ L G + Sbjct: 15 ILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRLSEPYPDLVLLDWML--PGGSGI 72 Query: 62 ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 + + ++ +P++ ++ + + + G DD + KP +E++AR+ A+ RR Sbjct: 73 QFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRR 132 Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + E + + + + E ++L + M + + ++ Q+ + Sbjct: 133 ISPMAVEEVIEMQGLSLDPSSHRVMANEQALDMGPTEFKLLHFFMTHPERVYSREQLLNY 192 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + VE+ V+ HI +LRK L V + R GY Sbjct: 193 VWGT-NVYVEDRTVDVHIRRLRKALEVDGHDRMVQTVRGTGYRF 235 >gi|224988879|ref|YP_002643566.1| two component sensory transduction protein [Mycobacterium bovis BCG str. Tokyo 172] gi|224771992|dbj|BAH24798.1| two component sensory transduction protein [Mycobacterium bovis BCG str. Tokyo 172] Length = 227 Score = 145 bits (365), Expect = 6e-33, Method: Composition-based stats. Identities = 53/225 (23%), Positives = 100/225 (44%), Gaps = 9/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + D L +G A D+ ++ L G + Sbjct: 5 LIVEDEESLADPLTFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLML--PGMSGTD 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + +RA S VP+I ++ S + + G DD V KP RE++AR+ A+ RR Sbjct: 63 VCKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDD 122 Query: 123 NNRAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 ++ GP+R+ + V G+ LP +E +LEYLM N G+ + + Q+ + Sbjct: 123 DSEMSDGVLESGPVRMDVERHVVSVNGDTITLPLKEFDLLEYLMRNSGRVLTRGQLIDRV 182 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 +G D + ++ H+ +LR K+ + + + LGY ++ Sbjct: 183 WGA-DYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVCGLGYKLE 226 >gi|168484408|ref|ZP_02709360.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CDC1873-00] gi|172042368|gb|EDT50414.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CDC1873-00] gi|332198688|gb|EGJ12770.1| response regulator [Streptococcus pneumoniae GA47368] Length = 235 Score = 145 bits (365), Expect = 6e-33, Method: Composition-based stats. Identities = 41/230 (17%), Positives = 88/230 (38%), Gaps = 15/230 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L+DD + +G S + + L + D ++ L +E Sbjct: 6 LLVDDEEHILKLLDYHLSKEGFSTQLVTNGRKALALAETEPFDFILLDIML--PQLDGIE 63 Query: 63 LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILAR 111 + + +RA + P++ +S + + G DD + KP R Sbjct: 64 VCKRLRAKGVKTPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELLARVKAVLRRTKG 123 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 ++++ G ++V+ + + ++ L +E +L YLM + + + Sbjct: 124 EQEGDDSDNIADDSWLFGTLKVYPERHEVYKANKLLSLTPKEFELLLYLMKHPNMTLTRE 183 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++ I+G +D E +V+ HI KLR+K+ + + + R GY Sbjct: 184 RLLERIWG-YDFGQETRLVDVHIGKLREKIEDNPKAPQFIRTIRGYGYKF 232 >gi|325571361|ref|ZP_08146861.1| response regulator VanR [Enterococcus casseliflavus ATCC 12755] gi|325155837|gb|EGC68033.1| response regulator VanR [Enterococcus casseliflavus ATCC 12755] Length = 231 Score = 145 bits (365), Expect = 6e-33, Method: Composition-based stats. Identities = 50/230 (21%), Positives = 90/230 (39%), Gaps = 12/230 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + ++G +E F DV+ ++ L Sbjct: 5 IIVVDDEKEIAELVTTFLRNEGFQVEPFYDGTSALAYLEKETVDVAVLDVML--PDIDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 +L + IR P++ ++ + G DD V KP + E++ARV RR + Sbjct: 63 QLLQTIRKTHFFPVLMLTAKGEDLDKITGLSLGADDYVTKPFNPLEVVARVKTQLRRYQR 122 Query: 122 SNNRAETGPIRVF--------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 N A I + + + G+ L E +IL YL ++G VA + Sbjct: 123 YNQSAVPQKIEEYEKEGLLLKINSHQCYLYGKEVFLTPIEFKILLYLFEHQGSVVASETL 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDW 222 F A++ N V +HI++LR+KL + + +GY I+ Sbjct: 183 FEAVWKEKYLD-NNNTVMAHIARLREKLNEQPRKPKLIKTVWGVGYIIEK 231 >gi|326789251|ref|YP_004307072.1| transcriptional regulator [Clostridium lentocellum DSM 5427] gi|326540015|gb|ADZ81874.1| two component transcriptional regulator, winged helix family [Clostridium lentocellum DSM 5427] Length = 234 Score = 145 bits (365), Expect = 6e-33, Method: Composition-based stats. Identities = 42/227 (18%), Positives = 80/227 (35%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + D + G + ++ D+ ++ L G Sbjct: 5 LLIVEDDEQIADILREYLMNKGYEVNWASTGNEGLEDFKMKMYDLLIVDIML--PGMDGY 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-------AA 114 L + IR S VP++ IS + G DD V KP E+ AR+ Sbjct: 63 SLCQSIRWVSDVPILIISARNKELDKIKGLKIGADDYVTKPFSLPEVEARIESLLRRYKR 122 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + G + + + + + E L E +L L N + K +++ Sbjct: 123 MNSSEEQEEIHHYEGGLSINFNRKQAYLNEEELNLTATEWALLTILAKNPQRPFTKKELY 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220 I+ D N + HI +LR KL + +++ +GY Sbjct: 183 EHIWHEEDIE-SSNTITVHIKQLRNKLKEDSKNPKFIETAWGIGYRF 228 >gi|170758603|ref|YP_001785595.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] gi|169405592|gb|ACA54003.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] Length = 225 Score = 145 bits (365), Expect = 6e-33, Method: Composition-based stats. Identities = 42/224 (18%), Positives = 94/224 (41%), Gaps = 6/224 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD + + ++G ++ S +S D+ ++ L Sbjct: 5 ILVIDDEVKIIEVIKLYLENEGYTVIQATSGIEALEKESKFNPDLLILDLML--PDISGE 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + IR S+VP+I ++ S + L+ + G DD + KP ++++A+V A+ +R+K Sbjct: 63 NVCERIRRESEVPIIMLTAKSSEDSILNGYSIGSDDYITKPFSPKQLVAKVNAVLKRVKG 122 Query: 122 SNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + + + E + L E +IL L N + ++ ++ I Sbjct: 123 NQCENLIFNNELIIDIVNKKVEYNNKEIILTASEYKILSILSRNPNRIFSREELMDYI-S 181 Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 + + + ++++HI +R KL + + R +GY + Sbjct: 182 RDNTCIYDRIIDTHIKNIRAKLDQDSKNPTYIKTIRGMGYRFNV 225 >gi|320449473|ref|YP_004201569.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Thermus scotoductus SA-01] gi|320149642|gb|ADW21020.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Thermus scotoductus SA-01] Length = 225 Score = 145 bits (365), Expect = 6e-33, Method: Composition-based stats. Identities = 45/220 (20%), Positives = 88/220 (40%), Gaps = 8/220 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L+DD + + A G + E L R D+ ++ L + Sbjct: 4 LLVDDDPALLEVLGAYLRGAGFEVLEAKDGEKALELF--PRADLIILDLML--PKLDGFK 59 Query: 63 LPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + R ++P++ ++ + + + G DD V KP +E+ R Sbjct: 60 VLEEVRRERPELPILMLTARGEEEERVKGLELGADDYVVKPFSPKEV-VARVKALLRRAG 118 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 GP+R+ R ++G+ PL + E +L L + G + ++ ++G Sbjct: 119 LKEELCYGPLRLLPKERQAYLEGKPLPLSQLEFDLLLTLAQHPGMVFTRERLLEKVWG-P 177 Query: 182 DEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220 D + VV+ HI+ LRKKL + +++ R +GY Sbjct: 178 DFPGIDRVVDVHIAALRKKLMDDPENPRFIETVRGVGYRF 217 >gi|312887194|ref|ZP_07746798.1| two component transcriptional regulator, winged helix family [Mucilaginibacter paludis DSM 18603] gi|311300506|gb|EFQ77571.1| two component transcriptional regulator, winged helix family [Mucilaginibacter paludis DSM 18603] Length = 229 Score = 145 bits (365), Expect = 6e-33, Method: Composition-based stats. Identities = 41/225 (18%), Positives = 87/225 (38%), Gaps = 10/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 +++DD + + +G + N+ + + D+ ++ + G + Sbjct: 8 ILIVDDEPDILELIEYNLKKEGYQVFVANNGQEAVAEAKRSLPDLIILDIMMPKMDGIEA 67 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R + ++ ++ + + F+ G DD + KPI R +++R+ AI RR Sbjct: 68 CRIMRTMPEFKNTFMVFLTARSEEYSEIAGFNVGADDYIAKPIKPRALVSRINAILRRNS 127 Query: 121 VSNNRAETGPIR----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 S ++ + + G L ++E +L L + GK + I Sbjct: 128 PSEELSDNKLEIGDLVIDREAYLVFQGGNKVVLAKKEFELLYLLASKPGKVYTREIILKN 187 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 I+ V ++ HI KLR+KL V + + +GY + Sbjct: 188 IW-EDSVVVTNRTIDVHIRKLREKLGET----YVSTVKGVGYKFE 227 >gi|297194039|ref|ZP_06911437.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|297152078|gb|EFH31517.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 229 Score = 145 bits (365), Expect = 6e-33, Method: Composition-based stats. Identities = 44/219 (20%), Positives = 92/219 (42%), Gaps = 5/219 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + + +G + A+ D+ ++ L G +E Sbjct: 10 LVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLML--PGRDGIE 67 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLKV 121 + R+IRA S VP++ ++ + +SG DD + KP +E++AR+ A R + Sbjct: 68 VCRLIRAESGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEEP 127 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + G + + G + G+ L E +L L + + + ++G + Sbjct: 128 APEQLTIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWG-Y 186 Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219 A + +V H+ +LR K+ + V + R +GY Sbjct: 187 RHAADTRLVNVHVQRLRSKVEKDPERPEIVVTVRGVGYK 225 >gi|162450321|ref|YP_001612688.1| two-component system response regulator [Sorangium cellulosum 'So ce 56'] gi|161160903|emb|CAN92208.1| two-component system response regulator [Sorangium cellulosum 'So ce 56'] Length = 228 Score = 145 bits (365), Expect = 6e-33, Method: Composition-based stats. Identities = 46/222 (20%), Positives = 79/222 (35%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LIDD + + +G ++ ++ D ++ G + Sbjct: 5 LLLIDDDTRLHALLASYLEQNGFAVTVACDGARGLLALAAGTFDAVLLDVM--MPGMDGI 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV--NKPIHHREILARVAAIYRRL 119 E+ R IR S +P++ ++ + + G DD + R Sbjct: 63 EVVRRIRQKSSMPILMLTARGDEADRVVGLEIGADDYIAKPFSPRELLARLRAVLRRATP 122 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + R G I + GR V G+ L E IL L G+ VA+ + G Sbjct: 123 DAAGERIVAGDIAIDVPGRVVTVSGKPTDLTGIEFDILVALARRAGRVVAREALLEEA-G 181 Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 D V V+ HIS LR+KL + + + R +GY + Sbjct: 182 RGDVNVGGRTVDVHISHLRQKLSDDPRSPRLIKTVRGVGYVL 223 >gi|54297348|ref|YP_123717.1| transcriptional regulatory protein CpxR [Legionella pneumophila str. Paris] gi|148358969|ref|YP_001250176.1| transcriptional regulator CpxR [Legionella pneumophila str. Corby] gi|296107018|ref|YP_003618718.1| two-component system, OmpR family, response regulator CpxR [Legionella pneumophila 2300/99 Alcoy] gi|53751133|emb|CAH12544.1| transcriptional regulatory protein CpxR [Legionella pneumophila str. Paris] gi|148280742|gb|ABQ54830.1| transcriptional regulatory protein CpxR [Legionella pneumophila str. Corby] gi|295648919|gb|ADG24766.1| two-component system, OmpR family, response regulator CpxR [Legionella pneumophila 2300/99 Alcoy] Length = 226 Score = 145 bits (365), Expect = 6e-33, Method: Composition-based stats. Identities = 48/224 (21%), Positives = 89/224 (39%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD + D +G ++ + E + D ++ L Sbjct: 5 ILIIDDDTELTDLLTQYLEPEGFNVVCVHDGENGVKKALNQVFDAIILDVML--PKLNGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 E+ + IR H + P++ ++ + + G DD + KP + RE++AR+ ++ Sbjct: 63 EVLKAIREHLETPVLMLTARGDDIDRIVGLEIGADDYLPKPCNPRELVARLRAILRRTQK 122 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + E I V R + G+ L E ILE L+ + G+ +K ++ Sbjct: 123 IPTPKPIIEQHNIIVDCSKRHVTMGGKFLELTNAEFNILEMLIKSPGQAFSKEELTEYAL 182 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 G + ++ HIS LR KL + G V + R GY + Sbjct: 183 GRK-YTAYDRSIDVHISNLRNKLGDNPQGEPLVKTVRGFGYMFN 225 >gi|311067831|ref|YP_003972754.1| two-component response regulator YkoH [Bacillus atrophaeus 1942] gi|310868348|gb|ADP31823.1| two-component response regulator (YkoH) [Bacillus atrophaeus 1942] Length = 225 Score = 145 bits (365), Expect = 6e-33, Method: Composition-based stats. Identities = 46/221 (20%), Positives = 93/221 (42%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G + + + ++ L G L Sbjct: 6 ILIVEDEEKIARVLQLELEYEGYKATIKETGTEGLHAALEEKFALVLLDVML--PGLSGL 63 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +R P+I ++ S+ + D G +D V KP E+LAR+ A R+ Sbjct: 64 EVLRRLRKTDMHTPVILLTARDSIPDKVTGLDIGANDYVTKPFEIEELLARIRAALRQNG 123 Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + +V R+ + + L RE +L +L+ + + + + QI ++++G Sbjct: 124 SDPGTFLSLGDLQVNEKTREVKRADQEVELTPREFDLLVFLLKHPQQVLTREQILASVWG 183 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 FD + NVV+ +I +RKK+ + + R +GY+I Sbjct: 184 -FDYLGDTNVVDVYIRYIRKKMDYPYEKQLIHTVRGVGYAI 223 >gi|253582051|ref|ZP_04859275.1| response regulator [Fusobacterium varium ATCC 27725] gi|251836400|gb|EES64937.1| response regulator [Fusobacterium varium ATCC 27725] Length = 221 Score = 145 bits (365), Expect = 6e-33, Method: Composition-based stats. Identities = 48/222 (21%), Positives = 94/222 (42%), Gaps = 7/222 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + ++ E + D+ ++ L Sbjct: 5 ILIVEDEKNLIKVIEDTLVEEDFITFKALDGETALEMFYEHNPDLILLDINL--PKMNGW 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IR S +P+I ++ S L G DD + KP + + ++ I + + Sbjct: 63 EVCQNIRRESNIPIIMMTARDSEIDELKGLSIGADDYITKPFSLKVLNIKIKKILKIDEN 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 S+ + + V GE L RRE + LEYL+ N+G ++ + + ++G F Sbjct: 123 SSYKFSNLS--FDFRSGELVVNGENIELTRREIQFLEYLIKNKGIIFSRDVLLNEVWG-F 179 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 D ++ VV++ + +LRKKL + D + + R +GY D N Sbjct: 180 DFEGDDRVVDTLVKRLRKKLGDYS--DMIKTIRGMGYIFDEN 219 >gi|224371593|ref|YP_002605757.1| response regulator, CheY-like receiver domain protein [Desulfobacterium autotrophicum HRM2] gi|223694310|gb|ACN17593.1| response regulator, CheY-like receiver domain protein [Desulfobacterium autotrophicum HRM2] Length = 247 Score = 145 bits (365), Expect = 6e-33, Method: Composition-based stats. Identities = 37/231 (16%), Positives = 79/231 (34%), Gaps = 14/231 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + G + + + S ++ Sbjct: 13 ILIVDDDKKLCRLVTDYLTPMGYDVASAHDGIKGLEILQSGCFHAVILDVM--MPKMDGF 70 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILAR 111 E+ + +R S +P++ ++ + + G DD + K R Sbjct: 71 EMLKQLRKQSDIPVLMLTAMGEETDRIVGLEMGADDYLPKTFSSRELLARLRAVTRRHRL 130 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + +V +N G + + R + G+ L E +L L + +++ Sbjct: 131 SMDRTVKSQVKDNTLTAGELEIHLKARTAYLSGKPLNLTPLEYDLLLTLAKFPARVLSRD 190 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221 Q+ A+ G V + V+ HIS LR+KL + + + R +GY + Sbjct: 191 QLLDAVAGRS-YDVFDRSVDVHISSLRRKLGEDPRNPRFIQTVRTVGYMFN 240 >gi|254466921|ref|ZP_05080332.1| phosphate regulon transcriptional regulatory protein PhoB [Rhodobacterales bacterium Y4I] gi|206687829|gb|EDZ48311.1| phosphate regulon transcriptional regulatory protein PhoB [Rhodobacterales bacterium Y4I] Length = 229 Score = 145 bits (365), Expect = 6e-33, Method: Composition-based stats. Identities = 48/221 (21%), Positives = 88/221 (39%), Gaps = 4/221 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61 ++++D ++ DG + E + D+ ++ + G +V Sbjct: 9 LVVEDEMAQREVLAYNLEADGFRVLRAGHGEEALLVVEEDMPDIIILDWMMPNLSGIEVC 68 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + +P+I +S + ++G DD V KP E++ARV RR++ Sbjct: 69 RRLKTRSETRNIPVIMLSARSEEVDKVRGLETGADDYVVKPYSVIELMARVRTQLRRVRP 128 Query: 122 SNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S I + ++ L E R+L M G+ ++ Q+ ++G Sbjct: 129 STVGVRLEFDDIVLDAETHKVSRADNPLKLGPTEFRLLSTFMEKPGRVWSREQLLDRVWG 188 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D V+ V+ HI +LRK L G DPV + R GY++ Sbjct: 189 R-DIYVDTRTVDVHIGRLRKALTQHGGSDPVRTVRGAGYAL 228 >gi|325475644|gb|EGC78820.1| sensor histidine kinase/response regulator [Treponema denticola F0402] Length = 228 Score = 145 bits (365), Expect = 6e-33, Method: Composition-based stats. Identities = 50/219 (22%), Positives = 96/219 (43%), Gaps = 4/219 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + D +G + L S D+ ++ L LE Sbjct: 5 LIVEDDEGIADFLRFELEHEGYGVLHAADGRTALELFESDTPDILLLDIML--PQLNGLE 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR S VP+I ++ + DSG DD + KP E+LAR+ A+ RR +V Sbjct: 63 VLRRIRKTSSVPVIMLTARGETFDKVSGLDSGADDYLAKPFEIEELLARMRAVIRRNEVR 122 Query: 123 NNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + I + V + L + E +L+ + N+ +++ +I ++G Sbjct: 123 GTSVLKLRAIELDPAAMKVMVNKKHTILSKTEYLLLKTFIENKNTVLSRDRIIGEVWGE- 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + ++EN V+ ++ LR K+ K G + + + R +GY + Sbjct: 182 NYYIDENSVDVYVRHLRSKIDEKTGEEYISTVRGVGYVM 220 >gi|146312332|ref|YP_001177406.1| DNA-binding transcriptional regulator BaeR [Enterobacter sp. 638] gi|145319208|gb|ABP61355.1| two component transcriptional regulator, winged helix family [Enterobacter sp. 638] Length = 240 Score = 145 bits (365), Expect = 6e-33, Method: Composition-based stats. Identities = 49/224 (21%), Positives = 90/224 (40%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + I G + + + ++ ++ L G L Sbjct: 13 ILIVEDEPKLGQLLIDYLRAAGYAPSLISHGDQVLPYVRQTPPNLILLDLML--PGTDGL 70 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R IR S+VP++ ++ L + G DD + KP RE++ARV I RR K Sbjct: 71 TLCREIRRFSEVPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 Query: 122 SNNRAE---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 P+ V + ++ L E R+L+ L GK ++ Q+ + +Y Sbjct: 131 QRELQVLDAESPLIVDESRFQASWRSKLLDLTPAEFRLLKTLSHEPGKVFSREQLLNQLY 190 Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + V + ++SHI LR+KL + + +GY + Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLEALDADQSFIRAVYGVGYRWE 233 >gi|126696581|ref|YP_001091467.1| two-component response regulator, phosphate [Prochlorococcus marinus str. MIT 9301] gi|112818638|gb|ABI23442.1| two-component response regulator [Prochlorococcus marinus str. MIT 9301] gi|126543624|gb|ABO17866.1| two-component response regulator, phosphate [Prochlorococcus marinus str. MIT 9301] Length = 242 Score = 145 bits (365), Expect = 6e-33, Method: Composition-based stats. Identities = 45/229 (19%), Positives = 88/229 (38%), Gaps = 11/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA-REDVSAIEAFLIGKGEKV 60 +L++D ++ +G + F ++ ++DV I L+ G Sbjct: 14 ILLVEDDKSIRLTVSETLSSEGFRVSSFKDGLSALDFINNDIKKDVDLIILDLMLPGLNG 73 Query: 61 LELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARV 112 LEL R I P++ +S + + + G DD + KP R ++ R Sbjct: 74 LELCRKIRNDEDYTPILILSAKDNESDRVLGLEVGADDYLTKPFGLNELIARSRALIRRS 133 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + ++ S+ E I++F + + L +E ++LE M N + ++ Sbjct: 134 KRNKKNIEKSHTVIEFNHIKMFLEECRVTSFDKEITLSPKEFKLLELFMKNPKRVWSRDL 193 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220 I I+ D + V+ H+ LR+KL + + + R GY Sbjct: 194 ILEKIW-EIDFIGDTKTVDVHVRWLREKLEEDPSAPKFLKTVRGFGYKF 241 >gi|52143545|ref|YP_083284.1| response regulator [Bacillus cereus E33L] gi|51977014|gb|AAU18564.1| response regulator [Bacillus cereus E33L] Length = 232 Score = 145 bits (365), Expect = 6e-33, Method: Composition-based stats. Identities = 40/229 (17%), Positives = 84/229 (36%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +G + ++ E + ++ ++ ++ + Sbjct: 6 ILIVDDDQDIVRFMNVNLMQEGFKVFSAHNGEEALEIINNNSIQLAILDIM--MPQMDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARVA 113 EL R IR +P+I +S S + F +G DD + KP E Sbjct: 64 ELCRRIREKHSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 123 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 ++V + + + R + GE L + E IL + A + + +I Sbjct: 124 FNQNAVQVIEKKINIRGLEIDEVSRTVILYGETINLTKTEYEILYLMAAAKNRVFTIEEI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + +++ N V HI++LR K+ + + +GY I+ Sbjct: 184 YESVWKERAYE-SNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIE 231 >gi|170754525|ref|YP_001780005.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] gi|169119737|gb|ACA43573.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] Length = 228 Score = 145 bits (365), Expect = 6e-33, Method: Composition-based stats. Identities = 33/224 (14%), Positives = 84/224 (37%), Gaps = 9/224 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + ++ + + + E + DV ++ L G L Sbjct: 4 ILIVEDESSIRGFVKVNLKMNNFDVIEAETGEEGIEKARKHKPDVVVLDIML--PGVDGL 61 Query: 62 ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH----REILARVAAIY 116 E+ + + + + +I ++ + + G DD + KP + I A + + Sbjct: 62 EVCKTLRQEFPNMGIIMLTAKSQDTDKVSGLEYGADDYIIKPFNPLELTLRIKAILRRVN 121 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + +N GP ++ + E + E +++ + N GK + ++ Sbjct: 122 AVKESDDNIITGGPFKIDLYSKKIHKNEEEIDITPTEYLLMKIFIENPGKAFNRDELLDL 181 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYS 219 ++G +D + +V+ +I +LR K+ + + GY Sbjct: 182 VWG-YDFMGDSKIVDVNIRRLRSKIEETPSEPKFIKTVWGTGYR 224 >gi|162147251|ref|YP_001601712.1| two-component response regulator [Gluconacetobacter diazotrophicus PAl 5] gi|161785828|emb|CAP55399.1| Two-component response regulator [Gluconacetobacter diazotrophicus PAl 5] Length = 226 Score = 145 bits (365), Expect = 6e-33, Method: Composition-based stats. Identities = 51/223 (22%), Positives = 95/223 (42%), Gaps = 6/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D V++ + G +E ++ + +L S D+ ++ L G G L Sbjct: 3 ILVVEDDPTVRNFVAKGLREAGHLVEPVDNGKDGLFLAVSENFDLIILDRMLPG-GIDGL 61 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYR 117 L IRA + P++ +S + + +G DD V KP E + ++ R Sbjct: 62 RLLETIRAQNNSTPVLLLSALADVDDRVQGLKAGGDDYVTKPFAFSELLARVEALSRRGR 121 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 R + + R G L RE R+LEYLM N G+ V +T + + Sbjct: 122 SDNAPLTRLNVADLEIDLLSRSSAAAGSRIDLQPREFRLLEYLMRNAGQVVTRTMLLEGV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + + NV++ H+S+LR+K+ + + R GY + Sbjct: 182 WD-YHFDPQTNVIDVHVSRLRQKVDKPFDTPLIHTIRNAGYML 223 >gi|27468859|ref|NP_765496.1| two component response regulator [Staphylococcus epidermidis ATCC 12228] gi|81842588|sp|Q8CN92|HSSR_STAES RecName: Full=Heme response regulator hssR gi|27316407|gb|AAO05582.1|AE016750_187 two component response regulator [Staphylococcus epidermidis ATCC 12228] Length = 224 Score = 144 bits (364), Expect = 6e-33, Method: Composition-based stats. Identities = 49/226 (21%), Positives = 95/226 (42%), Gaps = 6/226 (2%) Query: 1 MF--VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE 58 M +++DD + + + + F S E + D++ ++ G Sbjct: 1 MINCLIVDDDKKLLQYVSSHLERESIQTHTFTSGEASLDFLENKNVDIAIVDIM--MSGM 58 Query: 59 KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 EL + ++ +P+I ++ +L F SG DD V KP +E+L R+ A+ RR Sbjct: 59 DGFELCQTLKDDYHIPVIMLTARDALSDKERAFLSGTDDYVTKPFEVKELLFRIKAVLRR 118 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQ-GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 +++ + + + + LP +E ++L L +N + I I Sbjct: 119 YQINADNELQLGNLILNQSYMEITVGSKTMNLPNKEFQLLFLLASNPKHIFTRDDIIGKI 178 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 +G FD ++ V+ HI +LR++L + + R GY +D N Sbjct: 179 WG-FDYEGDDRTVDVHIKRLRQRLSKLKSSVSIQTVRGQGYRVDQN 223 >gi|33861262|ref|NP_892823.1| two-component response regulator, phosphate [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33639994|emb|CAE19164.1| two-component response regulator, phosphate [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 242 Score = 144 bits (364), Expect = 6e-33, Method: Composition-based stats. Identities = 44/229 (19%), Positives = 83/229 (36%), Gaps = 11/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEW-LQSSAREDVSAIEAFLIGKGEKV 60 +LI+D ++ +G + F + +D I L+ G Sbjct: 14 ILLIEDDKSIRLTVTESLISEGFEVSNFKDGSSALDFILGEGIKDFDLILLDLMLPGLNG 73 Query: 61 LELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARV 112 LEL R I P++ +S + + + G DD + KP R +L R Sbjct: 74 LELCRKIRNEELYTPILILSAKGNESDRVLGLEVGADDYLTKPFGISELIARCRALLRRS 133 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + E I++F++ + L +E ++LE + N + ++ Sbjct: 134 KRGKEKKQKIETIIEYKNIKMFTEECRVTNFNQEIILSPKEFKLLELFIKNPKRVWSRDL 193 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 I I+ + D + V+ H+ LR+KL + + R GY Sbjct: 194 ILEKIWAI-DFIGDTKTVDVHVRWLREKLEENPSAPKIIKTVRGFGYRF 241 >gi|325663524|ref|ZP_08151934.1| hypothetical protein HMPREF0490_02675 [Lachnospiraceae bacterium 4_1_37FAA] gi|331087049|ref|ZP_08336123.1| hypothetical protein HMPREF0987_02426 [Lachnospiraceae bacterium 9_1_43BFAA] gi|325470423|gb|EGC73654.1| hypothetical protein HMPREF0490_02675 [Lachnospiraceae bacterium 4_1_37FAA] gi|330409329|gb|EGG88776.1| hypothetical protein HMPREF0987_02426 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 225 Score = 144 bits (364), Expect = 6e-33, Method: Composition-based stats. Identities = 38/223 (17%), Positives = 92/223 (41%), Gaps = 6/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + ++ G ++ + D++ I ++ Sbjct: 6 ILVVDDESRMRKLVKDFLTRSGYTVVEAADGMEAMDIFYEQN-DIALIILDVMMPKMDGW 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV--NKPIHHREILARVAAIYRRL 119 ++ R +R HS+VP+I ++ + L F+ GVD+ + + Sbjct: 65 QVCREVRMHSKVPIIMLTARGEERDELQGFELGVDEYISKPFSPKILVARVEAILRRTNV 124 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++ + G I V + ++ G L +E +L Y + N+G +++ +I + ++ Sbjct: 125 FAADEVVDAGGISVDKAAHEVKIDGVPIDLSYKEFELLAYFIENQGIALSREKILNNVW- 183 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D + +++H+ KLR KL +K + + + +GY + Sbjct: 184 NYDYFGDARTIDTHVKKLRNKLGDKG--EYIKTIWGMGYKFEV 224 >gi|220930052|ref|YP_002506961.1| transcriptional regulator [Clostridium cellulolyticum H10] gi|220000380|gb|ACL76981.1| two component transcriptional regulator, winged helix family [Clostridium cellulolyticum H10] Length = 234 Score = 144 bits (364), Expect = 6e-33, Method: Composition-based stats. Identities = 45/231 (19%), Positives = 88/231 (38%), Gaps = 14/231 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD + + ++G ++ + + + + + + ++ L GE L Sbjct: 6 ILVIDDDKEIVELIRIYLQNEGYNVLVGFNGDEGVEILAKQKIHLLILDIML--PGEDGL 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R IR +P+I +S + +G DD + KP + E++ARV + RR Sbjct: 64 QICRKIRESYIIPIIMVSAKSCDMDKIMGLGTGADDYLAKPFNPMELMARVKSQLRRSFY 123 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPL----------PRRERRILEYLMANRGKRVAKT 171 N + + E IL L + GK + Sbjct: 124 MNTQVLDKQHDENIINICGLSINKNNHTVSLLGNIVDLTPTEYEILLLLAGSPGKVFSVE 183 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 +IF +++ N V HI ++R+KL N + + +GY I+ Sbjct: 184 KIFESVWKQKFYE-SNNTVMVHIWRMREKLESNPKEPKIIKTIWGVGYKIE 233 >gi|15901898|ref|NP_346502.1| response regulator [Streptococcus pneumoniae TIGR4] gi|15903934|ref|NP_359484.1| response regulator [Streptococcus pneumoniae R6] gi|111657578|ref|ZP_01408316.1| hypothetical protein SpneT_02001237 [Streptococcus pneumoniae TIGR4] gi|116516111|ref|YP_817297.1| response regulator [Streptococcus pneumoniae D39] gi|148989900|ref|ZP_01821183.1| response regulator [Streptococcus pneumoniae SP6-BS73] gi|148992075|ref|ZP_01821849.1| response regulator [Streptococcus pneumoniae SP9-BS68] gi|148998124|ref|ZP_01825637.1| response regulator [Streptococcus pneumoniae SP11-BS70] gi|149006952|ref|ZP_01830633.1| response regulator [Streptococcus pneumoniae SP18-BS74] gi|149023777|ref|ZP_01836238.1| response regulator [Streptococcus pneumoniae SP23-BS72] gi|168486897|ref|ZP_02711405.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CDC1087-00] gi|168489143|ref|ZP_02713342.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae SP195] gi|168491607|ref|ZP_02715750.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CDC0288-04] gi|168494164|ref|ZP_02718307.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CDC3059-06] gi|168577113|ref|ZP_02722933.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae MLV-016] gi|194397101|ref|YP_002038671.1| response regulator PnpR [Streptococcus pneumoniae G54] gi|221232792|ref|YP_002511946.1| alkaline phosphatase synthesis transcriptional regulatory protein [Streptococcus pneumoniae ATCC 700669] gi|225855570|ref|YP_002737082.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae JJA] gi|225859838|ref|YP_002741348.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae 70585] gi|225861900|ref|YP_002743409.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae Taiwan19F-14] gi|237650562|ref|ZP_04524814.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CCRI 1974] gi|237821702|ref|ZP_04597547.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CCRI 1974M2] gi|298229982|ref|ZP_06963663.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae str. Canada MDR_19F] gi|298254056|ref|ZP_06977642.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae str. Canada MDR_19A] gi|298501581|ref|YP_003723521.1| response regulator [Streptococcus pneumoniae TCH8431/19A] gi|303259583|ref|ZP_07345559.1| response regulator [Streptococcus pneumoniae SP-BS293] gi|303262028|ref|ZP_07347973.1| response regulator [Streptococcus pneumoniae SP14-BS292] gi|303264484|ref|ZP_07350403.1| response regulator [Streptococcus pneumoniae BS397] gi|303266795|ref|ZP_07352676.1| response regulator [Streptococcus pneumoniae BS457] gi|303268985|ref|ZP_07354768.1| response regulator [Streptococcus pneumoniae BS458] gi|307128343|ref|YP_003880374.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae 670-6B] gi|5830529|emb|CAB54572.1| response regulator [Streptococcus pneumoniae] gi|14973592|gb|AAK76142.1| response regulator [Streptococcus pneumoniae TIGR4] gi|15459586|gb|AAL00695.1| Response regulator [Streptococcus pneumoniae R6] gi|116076687|gb|ABJ54407.1| response regulator [Streptococcus pneumoniae D39] gi|147756134|gb|EDK63177.1| response regulator [Streptococcus pneumoniae SP11-BS70] gi|147761553|gb|EDK68518.1| response regulator [Streptococcus pneumoniae SP18-BS74] gi|147924685|gb|EDK75770.1| response regulator [Streptococcus pneumoniae SP6-BS73] gi|147929124|gb|EDK80135.1| response regulator [Streptococcus pneumoniae SP9-BS68] gi|147929573|gb|EDK80566.1| response regulator [Streptococcus pneumoniae SP23-BS72] gi|183570147|gb|EDT90675.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CDC1087-00] gi|183572272|gb|EDT92800.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae SP195] gi|183574008|gb|EDT94536.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CDC0288-04] gi|183575934|gb|EDT96462.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae CDC3059-06] gi|183577273|gb|EDT97801.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae MLV-016] gi|194356768|gb|ACF55216.1| PnpR response regulator TCS04 [Streptococcus pneumoniae G54] gi|220675254|emb|CAR69846.1| alkaline phosphatase synthesis transcriptional regulatory protein [Streptococcus pneumoniae ATCC 700669] gi|225722012|gb|ACO17866.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae 70585] gi|225723632|gb|ACO19485.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae JJA] gi|225728009|gb|ACO23860.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae Taiwan19F-14] gi|298237176|gb|ADI68307.1| response regulator [Streptococcus pneumoniae TCH8431/19A] gi|301795011|emb|CBW37475.1| alkaline phosphatase synthesis transcriptional regulatory protein [Streptococcus pneumoniae INV104] gi|301802754|emb|CBW35527.1| alkaline phosphatase synthesis transcriptional regulatory protein [Streptococcus pneumoniae INV200] gi|302636668|gb|EFL67158.1| response regulator [Streptococcus pneumoniae SP14-BS292] gi|302639135|gb|EFL69594.1| response regulator [Streptococcus pneumoniae SP-BS293] gi|302641452|gb|EFL71816.1| response regulator [Streptococcus pneumoniae BS458] gi|302643703|gb|EFL73969.1| response regulator [Streptococcus pneumoniae BS457] gi|302645854|gb|EFL76082.1| response regulator [Streptococcus pneumoniae BS397] gi|306485405|gb|ADM92274.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae 670-6B] gi|327388818|gb|EGE87166.1| response regulator [Streptococcus pneumoniae GA04375] gi|332071153|gb|EGI81648.1| response regulator [Streptococcus pneumoniae GA17545] gi|332071349|gb|EGI81843.1| response regulator [Streptococcus pneumoniae GA41301] gi|332071516|gb|EGI82009.1| response regulator [Streptococcus pneumoniae GA17570] gi|332198503|gb|EGJ12586.1| response regulator [Streptococcus pneumoniae GA41317] gi|332198895|gb|EGJ12976.1| response regulator [Streptococcus pneumoniae GA47901] Length = 235 Score = 144 bits (364), Expect = 6e-33, Method: Composition-based stats. Identities = 41/230 (17%), Positives = 88/230 (38%), Gaps = 15/230 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L+DD + +G S + + L + D ++ L +E Sbjct: 6 LLVDDEEHILKLLDYHLSKEGFSTQLVTNGRKALALAETEPFDFILLDIML--PQLDGME 63 Query: 63 LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILAR 111 + + +RA + P++ +S + + G DD + KP R Sbjct: 64 VCKRLRAKGVKTPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELLARVKAVLRRTKG 123 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 ++++ G ++V+ + + ++ L +E +L YLM + + + Sbjct: 124 EQEGDDSDNIADDSWLFGTLKVYPERHEVYKANKLLSLTPKEFELLLYLMKHPNMTLTRE 183 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++ I+G +D E +V+ HI KLR+K+ + + + R GY Sbjct: 184 RLLERIWG-YDFGQETRLVDVHIGKLREKIEDNPKAPQFIRTIRGYGYKF 232 >gi|226349426|ref|YP_002776540.1| putative OmpR family two-component response regulator [Rhodococcus opacus B4] gi|226245341|dbj|BAH55688.1| putative OmpR family two-component response regulator [Rhodococcus opacus B4] Length = 224 Score = 144 bits (364), Expect = 6e-33, Method: Composition-based stats. Identities = 52/221 (23%), Positives = 95/221 (42%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D A + + +G ++ + DV ++ L G Sbjct: 3 ILLVEDEARLAETVRRGLTAEGFVVDVAREGCDGLEQAVTGDFDVVVLDIML--PGMHGY 60 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ R +RA P++ +S D FD G DD + KP ++AR+ A+ RR Sbjct: 61 QILRELRARQVWTPVLMLSAKDGEYDQADAFDLGADDYLTKPFSFVILVARLRALLRRGA 120 Query: 121 VSNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 T R +V L RE +LE+L+ N+G V+K +I +++ Sbjct: 121 PERPAILTAGNLALDPARRRVSRGEDVLALTPREYGVLEFLLRNKGDVVSKAEILRSVWD 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + ++NVVE +I LR+K+ G +++ R +GY + Sbjct: 181 -SNYDGDDNVVEVYIGYLRRKIDAPFGMATIETVRGVGYRL 220 >gi|209964322|ref|YP_002297237.1| DNA-binding response regulator, putative [Rhodospirillum centenum SW] gi|209957788|gb|ACI98424.1| DNA-binding response regulator, putative [Rhodospirillum centenum SW] Length = 238 Score = 144 bits (364), Expect = 6e-33, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 87/228 (38%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++D G + + + D+ ++ L GE L Sbjct: 7 LLIVDDDREIRDLLTRYLARHGYRVTAAKDGQEMRRYLADRNIDLVVLDLML--PGEDGL 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R IRA P++ +S + + G DD + KP + RE++AR+ A+ RR++ Sbjct: 65 SLCRAIRADGGPPVVMLSAMGEDADRILGLEIGADDYLPKPFNPRELVARIKAVLRRVQT 124 Query: 122 SNNRA--------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 G + + R + QG L E +L L + +++ + Sbjct: 125 PGATPVNGAGALAFCGYVLDQAQRRLTDPQGAEVTLTAGEYELLVALATRPRRVLSRDDL 184 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 G + ++ IS+LR+K+ + + + R GY Sbjct: 185 LEITRGRSAGPFD-RSIDVQISRLRRKIEPDPADPAIIKTVRSGGYIF 231 >gi|329939736|ref|ZP_08289037.1| two-component system response regulator [Streptomyces griseoaurantiacus M045] gi|329301306|gb|EGG45201.1| two-component system response regulator [Streptomyces griseoaurantiacus M045] Length = 245 Score = 144 bits (364), Expect = 6e-33, Method: Composition-based stats. Identities = 46/227 (20%), Positives = 93/227 (40%), Gaps = 15/227 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + D +G ++ + + D+ ++ L G LE Sbjct: 22 LVVEDDQTIVDAIATRLRAEGFLVQTAGDGPSAVDTAEAWQPDLLILDIML--PGFDGLE 79 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R ++A VP++ ++ L G DD + KP RE+ ARV + RR++ + Sbjct: 80 VCRRVQAQRPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRRVERA 139 Query: 123 NNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 A T + R V+ E L E +L L +++ Q+ Sbjct: 140 ALAATTPRSGILRLGELEIDHAQRRVRVRSEDVHLTPTEFDLLVCLANTPRAVLSREQLL 199 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + ++ D + V+SHI LR+K+ G + + + +GY+++ Sbjct: 200 AEVWDWADASG-TRTVDSHIKALRRKI----GAERIRTVHGVGYALE 241 >gi|290955980|ref|YP_003487162.1| two-component system response regulator [Streptomyces scabiei 87.22] gi|260645506|emb|CBG68594.1| putative two-component system response regulator [Streptomyces scabiei 87.22] Length = 248 Score = 144 bits (364), Expect = 6e-33, Method: Composition-based stats. Identities = 44/225 (19%), Positives = 97/225 (43%), Gaps = 11/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D ++ + G S+ ++ + + + D+ ++ L Sbjct: 16 LVVEDDPSIRTLLTSALHAAGYSVSTADTGQTAMFEAGRGQPDLIVLDVGL--PDIDGFA 73 Query: 63 LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R +RA P++ ++ ++ + SG DD V KP H +E+L R+ AI RR + Sbjct: 74 VTRHLRAEGVYTPVLFLTARTDVEDRIIGLSSGGDDYVTKPFHVQEVLLRIRAILRRSDM 133 Query: 122 SN------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + + G L E R+L L+A + V K +I S Sbjct: 134 PPSGGTRRPPLRYEDLELDQQTHEVRRAGLPIQLSPTEFRLLVCLLAQPERVVGKKEILS 193 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +D A + +V++++ LR+K+ ++ + + R +GY + Sbjct: 194 EVW-HYDFAGDARIVDTYVRNLRRKI-DRFEPQLIQTVRGVGYCL 236 >gi|238895651|ref|YP_002920386.1| DNA-binding transcriptional regulator BaeR [Klebsiella pneumoniae NTUH-K2044] gi|330010883|ref|ZP_08306922.1| response regulator receiver domain protein [Klebsiella sp. MS 92-3] gi|238547968|dbj|BAH64319.1| two-compoent regulatory system response regulator [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|328534358|gb|EGF60966.1| response regulator receiver domain protein [Klebsiella sp. MS 92-3] Length = 240 Score = 144 bits (364), Expect = 6e-33, Method: Composition-based stats. Identities = 50/224 (22%), Positives = 89/224 (39%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + I G + N + + ++ L G L Sbjct: 13 ILIVEDEPKLGQLLIDYLQAAGYAPALINHGDKVLPYVRQTPPHLILLDLML--PGTDGL 70 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R IR S VP++ ++ L + G DD + KP RE++ARV I RR K Sbjct: 71 TLCREIRRFSDVPVVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 Query: 122 SNNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + P+ V + ++ L E R+L+ L GK ++ Q+ + +Y Sbjct: 131 QRDLQALDAQSPLIVDEGRFQASWRDKLLDLTPAEFRLLKTLSQEPGKVFSREQLLNHLY 190 Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + V + ++SHI LR+KL + + +GY + Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLEALDAEQSFIRAVYGVGYRWE 233 >gi|323439955|gb|EGA97670.1| two-component response regulator [Staphylococcus aureus O11] Length = 224 Score = 144 bits (364), Expect = 6e-33, Method: Composition-based stats. Identities = 48/220 (21%), Positives = 98/220 (44%), Gaps = 4/220 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + + + + S E L R D++ ++ G + Sbjct: 5 LVVDDDPRILNYIASHLQTEHIDAYTQPSGEAALKLLEKQRVDIAVVDIM--MDGMDGFQ 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L ++ +P+I ++ +L F SG DD V KP +E++ R+ A+ RR ++ Sbjct: 63 LCNTLKNDYDIPVIMLTARDALSDKERAFISGTDDYVTKPFEVKELIFRIRAVLRRYNIN 122 Query: 123 NNRAETGPIRVFSDGR-DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 +N T + + +V + LP +E ++L L + + QI I+G + Sbjct: 123 SNSEMTIGNLTLNQSYLELQVSNKTMTLPNKEFQLLFMLATRPKQIFTREQIIEKIWG-Y 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D +E V+ HI +LR++L+ +++ R GY ++ Sbjct: 182 DYGGDERTVDVHIKRLRQRLKKLNATLTIETVRGQGYKVE 221 >gi|196045036|ref|ZP_03112269.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|225863840|ref|YP_002749218.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|196024038|gb|EDX62712.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|225786425|gb|ACO26642.1| DNA-binding response regulator [Bacillus cereus 03BB102] Length = 232 Score = 144 bits (364), Expect = 6e-33, Method: Composition-based stats. Identities = 47/229 (20%), Positives = 89/229 (38%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + A +G + ++ E + ++ ++ ++ + Sbjct: 6 ILIVDDDQDIVRFVNANLMQEGFKVLSAHNGEEALKIINNNSIQLAILDIM--MPHMDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL R IR +P++ +S S + F +G DD + KP E +ARV A RR Sbjct: 64 ELCRRIREKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 123 Query: 122 SNNRAETGPIR--------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 N A + + R + GE L + E IL + A + +I Sbjct: 124 FNQNAVQVIEKKISIRGLEIDEVSRTVMLYGETINLTKTEYDILYLMAAAENRVFTIEEI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + +++ N V HI++LR K+ + + +GY I+ Sbjct: 184 YESVWKERAYE-SNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIE 231 >gi|25300968|pir||AC0630 response regulator copR [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16502270|emb|CAD08222.1| response regulator [Salmonella enterica subsp. enterica serovar Typhi] gi|29137883|gb|AAO69444.1| response regulator [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 248 Score = 144 bits (364), Expect = 6e-33, Method: Composition-based stats. Identities = 46/219 (21%), Positives = 93/219 (42%), Gaps = 3/219 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D + + G ++ L + ++ L G Sbjct: 25 ILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIML--PGLDGW 82 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R +R Q P+I ++ S++ + ++G +D + KP E+LARV A R+ Sbjct: 83 QVLRALRTAYQPPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHVP 142 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 R + + + + G+ L R+E +L L + G+ V +T I S ++G+ Sbjct: 143 VFTRLTINGLDMDATKQSVLRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWGI- 201 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + E N V+ I +LR K+ + + + + +GY + Sbjct: 202 NFDSETNTVDVAIRRLRAKVDDPFEKKLIMTVQGMGYRL 240 >gi|21221456|ref|NP_627235.1| two-component system response regulator [Streptomyces coelicolor A3(2)] gi|289771258|ref|ZP_06530636.1| two-component system response regulator [Streptomyces lividans TK24] gi|7799208|emb|CAB90924.1| putative two-component system response regulator [Streptomyces coelicolor A3(2)] gi|289701457|gb|EFD68886.1| two-component system response regulator [Streptomyces lividans TK24] Length = 229 Score = 144 bits (364), Expect = 6e-33, Method: Composition-based stats. Identities = 43/219 (19%), Positives = 91/219 (41%), Gaps = 5/219 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + + +G + + D+ ++ L G +E Sbjct: 10 LVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFRETKPDLVLLDLML--PGRDGIE 67 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLKV 121 + R+IRA S VP++ ++ + +SG DD + KP +E++AR+ A R + Sbjct: 68 VCRLIRAESGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEEP 127 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + G + + G + G+ L E +L L + + + ++G + Sbjct: 128 APEQLAIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWG-Y 186 Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219 A + +V H+ +LR K+ + V + R +GY Sbjct: 187 RHAADTRLVNVHVQRLRSKVEKDPEKPEIVVTVRGVGYK 225 >gi|331698935|ref|YP_004335174.1| winged helix family two component transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326953624|gb|AEA27321.1| two component transcriptional regulator, winged helix family [Pseudonocardia dioxanivorans CB1190] Length = 225 Score = 144 bits (364), Expect = 6e-33, Method: Composition-based stats. Identities = 44/219 (20%), Positives = 87/219 (39%), Gaps = 5/219 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + + +G R DV ++ L G ++ Sbjct: 6 LVVDDDPALAEMLTIVLRGEGFDTAVVGDGTKALPAVRELRPDVVLLDLML--PGMNGID 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR+ S VP++ ++ + +SG DD V KP +E++AR+ A RR++ Sbjct: 64 VCRAIRSESGVPIVMLTAKSDTVDIVLGLESGADDYVVKPFKPKELVARIRARVRRVENE 123 Query: 123 NNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 G + + G L E +L L + + + ++G + Sbjct: 124 PAEQLSIGDVDIDVPAHQVTRGGVPIALTPLEFDLLVALARKPRQVFTREVLLEQVWG-Y 182 Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219 A + +V H+ +LR K+ + + V + R +GY Sbjct: 183 RHAADTRLVNVHVQRLRSKVERDPEHPEVVLTVRGVGYK 221 >gi|326692153|ref|ZP_08229158.1| DNA-binding response regulator [Leuconostoc argentinum KCTC 3773] Length = 229 Score = 144 bits (364), Expect = 6e-33, Method: Composition-based stats. Identities = 42/229 (18%), Positives = 91/229 (39%), Gaps = 9/229 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + ++G + ++ D++ + ++ L Sbjct: 3 ILVVDDDIEIAELLEIYLKNEGYEPIMATDGKEALSKLNTN-PDIALMILDVMMPNMNGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + +R S++P++ +S + +G DD V KP + E++ARV ++ RR + Sbjct: 62 EVVKTVRKDSRIPILMLSAKSGDMDKIQGLITGADDYVTKPFNPLEVMARVRSLLRRAEN 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF------PLPRRERRILEYLMANRGKRVAKTQIFS 175 + + + S + + L E IL L ++ + + IF Sbjct: 122 AVQDQTPDVLDIGSLIINKDSHEVKTSDGDLVNLTALEFGILYLLASHPNRVFSADDIFE 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223 ++ + V V H+S LR K+ G + + +GY I+ N Sbjct: 182 RVW-QQESVVSAKTVMVHVSHLRDKIEEATNGDQVIQTVWGVGYKIEVN 229 >gi|227889918|ref|ZP_04007723.1| response regulator [Lactobacillus johnsonii ATCC 33200] gi|227849362|gb|EEJ59448.1| response regulator [Lactobacillus johnsonii ATCC 33200] Length = 231 Score = 144 bits (364), Expect = 6e-33, Method: Composition-based stats. Identities = 46/224 (20%), Positives = 90/224 (40%), Gaps = 10/224 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D + +G + + L + + ++ L + Sbjct: 6 ILLIEDEESLASFIQPELELEGYEVVWAKDGKEGLELFEKEKPTLILLDWML--PVYDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R IR S +P+I ++ + D G+DD + KP E+ AR+ I RRL+ Sbjct: 64 TVLRRIRKVSDIPIIMLTARNQASDISNALDQGLDDYMTKPFEIEELFARIRVILRRLER 123 Query: 122 SNNRA-----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + E +++ +GE L +E +L LM + K ++ ++ Sbjct: 124 EKRQVVSSTLEFSVLKIDLVSHKFWCKGEEIYLTPKEYALLCELMNDPEKVKSRDELLDI 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G +D + N V+ +I LR KL + + + R GY + Sbjct: 184 VWG-YDFVGQTNTVDVYIRALRNKLGKY--RNLIKTVRGYGYCL 224 >gi|331086452|ref|ZP_08335532.1| hypothetical protein HMPREF0987_01835 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330406218|gb|EGG85741.1| hypothetical protein HMPREF0987_01835 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 227 Score = 144 bits (364), Expect = 6e-33, Method: Composition-based stats. Identities = 45/223 (20%), Positives = 85/223 (38%), Gaps = 5/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G S E S + L + + + L+ G Sbjct: 4 ILIVEDDTNINNLLQEALSKAGYSCEQAFSGTEAKLLLNMQEHSYALVLLDLMLPGITGE 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + IR + +I ++ SL + SG DD + KP RE+LAR+ R + Sbjct: 64 AVLEEIRKKGNLQVIVLTAKDSLDEKVKVLTSGADDYITKPFEIREVLARIQVQLRHTEE 123 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEV----FPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + R + + R+E ILE L+ N + +K IF Sbjct: 124 KEIKESNLSFREMVLNKATFQVSIGGKILPKITRQEFAILELLLRNPKQVFSKEDIFEYA 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + E ++ HIS +RKK++ + +++ +GY + Sbjct: 184 WDEP-YMGETKTLDVHISNIRKKIKTVTSEEYIETVWGIGYRL 225 >gi|296111785|ref|YP_003622167.1| alkaline phosphatase synthesis transcriptional regulatory proteinPhoP [Leuconostoc kimchii IMSNU 11154] gi|295833317|gb|ADG41198.1| alkaline phosphatase synthesis transcriptional regulatory proteinPhoP [Leuconostoc kimchii IMSNU 11154] Length = 229 Score = 144 bits (364), Expect = 6e-33, Method: Composition-based stats. Identities = 40/225 (17%), Positives = 87/225 (38%), Gaps = 11/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +G ++ + L D ++ L + Sbjct: 4 ILVVDDETSISTLLKYNLEQNGYTVTVAADGQTAYELIGKQNFDAILLDLML--PVMDGM 61 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILA------RVAA 114 + + IR P+I ++ + + G DD + KP RE++A R + Sbjct: 62 TVLKTIRQDKISTPVILVTAKGDEFDRVFGLELGADDYITKPFSPREVIARLKAVLRRSQ 121 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + + + + + + ++ L RE +L Y G+ + + I Sbjct: 122 VDHHESERTDAIKIQNLVIDDNKKVVTKNDKILTLTPREYELLLYFSQRVGRVIDRETIL 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218 +A++G ++ E +V+ HIS LR+K+ N + + + R GY Sbjct: 182 TAVWG-YEFVGESRMVDMHISNLREKIETNPKSPEVLKTVRGFGY 225 >gi|229823749|ref|ZP_04449818.1| hypothetical protein GCWU000282_01051 [Catonella morbi ATCC 51271] gi|229786788|gb|EEP22902.1| hypothetical protein GCWU000282_01051 [Catonella morbi ATCC 51271] Length = 218 Score = 144 bits (364), Expect = 6e-33, Method: Composition-based stats. Identities = 44/220 (20%), Positives = 96/220 (43%), Gaps = 6/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A +++G G + + L D+ ++ + Sbjct: 3 LMIVEDEAAIREGVSEFLRSQGYFVWEAADGQEALDLFGEVSVDLVLLDIM--MPKKNGF 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ IR S VP++ ++ + + FD VD + KP + R+ A+ +R Sbjct: 61 EVLAEIRKTSTVPVLMLTAVADEEAQIKTFDLLVDGYIQKPFSLALLAKRIEALLKRHYG 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + E +V + +GEV +E +L+ L+ ++G+ +++ QI ++ Sbjct: 121 EFDIWEYKDSKVNFSSYEATYKGEVADTKPKELAVLKLLLDHQGQVLSRAQILDHVWANQ 180 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D+ + VV+ +I +LRK L G D + + + +GY ++ Sbjct: 181 DDPPFDRVVDVYIKQLRKNL----GLDCIVTVKNVGYKLE 216 >gi|72162895|ref|YP_290552.1| response regulator receiver [Thermobifida fusca YX] gi|71916627|gb|AAZ56529.1| response regulator receiver [Thermobifida fusca YX] Length = 225 Score = 144 bits (364), Expect = 6e-33, Method: Composition-based stats. Identities = 44/219 (20%), Positives = 90/219 (41%), Gaps = 5/219 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + + +G + + + D+ ++ L G ++ Sbjct: 6 LVVDDDLALAEMLGIVLRGEGFEPSFVHDGDKALEAFRETKPDLVLLDLML--PGADGID 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IRA S VP++ ++ + +SG DD + KP +E++AR+ A RR + Sbjct: 64 VCRQIRAESGVPIVMLTAKSDTVDVVLGLESGADDYIVKPFKPKELVARIRARLRRTEEP 123 Query: 123 NNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + G I + G +V L E +L L + + + ++G + Sbjct: 124 APEILQIGDITIDVAGHSVRRGDQVINLTPLEFDLLVALARKPRQVFTREVLLEQVWG-Y 182 Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219 A + +V H+ +LR K+ + V + R +GY Sbjct: 183 RHAADTRLVNVHVQRLRAKIEKDPEHPEIVVTVRGVGYK 221 >gi|62389763|ref|YP_225165.1| two component response regulator [Corynebacterium glutamicum ATCC 13032] gi|41325098|emb|CAF19579.1| putative two component response regulator [Corynebacterium glutamicum ATCC 13032] Length = 255 Score = 144 bits (364), Expect = 6e-33, Method: Composition-based stats. Identities = 41/228 (17%), Positives = 86/228 (37%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V+D +G ++ + + + ++ G L Sbjct: 26 ILVVDDEQAVRDSLRRSLSFNGYNVVLAEDGIQALEMIDKEQPALVILDVM--MPGMDGL 83 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI--------HHREILARV 112 E+ R +R P++ ++ ++ + D+G DD + KP + Sbjct: 84 EVCRHLRSEGDDRPILILTARDNVSDRVGGLDAGADDYLAKPFALEELLARVRSLVRRSA 143 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + G + + + RD G L R E +L+ L+ N+ K + + Q Sbjct: 144 VESNQSSSIEQALLSCGDLTLDPESRDVYRNGRAISLTRTEFALLQLLLKNQRKVLTRAQ 203 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I ++G D N +E +I LR+K + + + R +GY + Sbjct: 204 ILEEVWGC-DFPTSGNALEVYIGYLRRKTELEGEDRLIHTVRGVGYVL 250 >gi|150017260|ref|YP_001309514.1| two component transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149903725|gb|ABR34558.1| two component transcriptional regulator, winged helix family [Clostridium beijerinckii NCIMB 8052] Length = 223 Score = 144 bits (364), Expect = 6e-33, Method: Composition-based stats. Identities = 40/223 (17%), Positives = 101/223 (45%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++ + ++ ++ E ++ S+ + D+ ++ L Sbjct: 5 ILIVEDELRIRFLLRDYLIKEDFNVFEASNGEEGLFVFSTQKIDLVLLDIM--MPVMDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119 + +R S VP++ ++ + L +D G DD + KP + ++A+V A R Sbjct: 63 TMLEKLREVSTVPVVLLTAKGEEEDKLQGYDYGADDYITKPFSPKVLIAKVKALLKRTRE 122 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + ++ + + + + ++ G+ L +E +L YL+ N G +++ I ++G Sbjct: 123 DLDSSFQDFNGLTINKLSHEVKIDGKEIILSPKEYELLMYLVTNEGIALSRDNILDNVWG 182 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + D + V++++ +LR+KL +K + + R GY + Sbjct: 183 I-DYYGDIRTVDTNVKRLREKLLDKSN--YIITVRGSGYKFEV 222 >gi|15836991|ref|NP_297679.1| two-component system, regulatory protein [Xylella fastidiosa 9a5c] gi|28199554|ref|NP_779868.1| two-component system, regulatory protein [Xylella fastidiosa Temecula1] gi|71274658|ref|ZP_00650946.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Xylella fastidiosa Dixon] gi|71899630|ref|ZP_00681784.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Xylella fastidiosa Ann-1] gi|71901814|ref|ZP_00683880.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Xylella fastidiosa Ann-1] gi|170730925|ref|YP_001776358.1| response regulator receiver protein [Xylella fastidiosa M12] gi|182682290|ref|YP_001830450.1| two component transcriptional regulator [Xylella fastidiosa M23] gi|9105223|gb|AAF83199.1|AE003890_8 two-component system, regulatory protein [Xylella fastidiosa 9a5c] gi|28057669|gb|AAO29517.1| two-component system, regulatory protein [Xylella fastidiosa Temecula1] gi|71164390|gb|EAO14104.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Xylella fastidiosa Dixon] gi|71728413|gb|EAO30578.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Xylella fastidiosa Ann-1] gi|71730582|gb|EAO32659.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Xylella fastidiosa Ann-1] gi|167965718|gb|ACA12728.1| response regulator receiver protein [Xylella fastidiosa M12] gi|182632400|gb|ACB93176.1| two component transcriptional regulator, winged helix family [Xylella fastidiosa M23] gi|307578567|gb|ADN62536.1| two component transcriptional regulator [Xylella fastidiosa subsp. fastidiosa GB514] Length = 227 Score = 144 bits (364), Expect = 6e-33, Method: Composition-based stats. Identities = 59/221 (26%), Positives = 101/221 (45%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 +L++D A +++ A +G +++ E ++ DV I+ L G + Sbjct: 3 ILLVEDEAPLRETLAARLKREGFAVDAAQDGEEGIYMGREVPFDVGIIDLGLPKMSGMDL 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119 ++ R + P++ ++ S Q+ ++ G DD + KP H E+LARV A + R Sbjct: 63 VKALR--DEGKKFPVLILTARSSWQSKVEGLKQGADDYLVKPFHVEELLARVNALLRRAA 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S E G + + + V G L E ++LEYLM + G+ V+K + IY Sbjct: 121 GWSKPTLECGSVALDLAAQTVSVNGTNVDLTSYEYKVLEYLMVHAGELVSKADLTEHIY- 179 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D + NV+E I +LRKKL P+++ R GY Sbjct: 180 QQDFDRDSNVLEVFIGRLRKKLDADGDLKPIETVRGRGYRF 220 >gi|320532510|ref|ZP_08033327.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 171 str. F0337] gi|320135272|gb|EFW27403.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 171 str. F0337] Length = 243 Score = 144 bits (364), Expect = 6e-33, Method: Composition-based stats. Identities = 48/232 (20%), Positives = 95/232 (40%), Gaps = 15/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-------EDVSAIEAFLI 54 +L++D +D DG + + + ++R D+ ++ L Sbjct: 10 ILLVEDEENFRDPLALGLRRDGFEVVEAEDGQRAVEIFEASRRPGGVGPIDLVLLDLML- 68 Query: 55 GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILA 110 E+ IR S VP+I ++ + + + G DD V KP +R + A Sbjct: 69 -PRLDGTEVCTRIRRSSSVPVIMLTAKDTELDKIVGLEIGADDYVTKPYSYRELLARLKA 127 Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + GP+R+ + + V GEV +P RE +LE + N G+ + + Sbjct: 128 VLRRSRDTGPELEPVLVAGPVRMDVERHEVRVDGEVVAIPLREFELLELFLRNPGRVLTR 187 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 +QI ++G + + ++ H+ +LR ++ + + + R LGY +D Sbjct: 188 SQIIERLWG-PEYGGDTKTLDVHVKRLRGRIEADASKPVLITTVRGLGYRLD 238 >gi|295093005|emb|CBK82096.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Coprococcus sp. ART55/1] Length = 228 Score = 144 bits (364), Expect = 6e-33, Method: Composition-based stats. Identities = 44/225 (19%), Positives = 94/225 (41%), Gaps = 10/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD L+ G D + ++ + D+ ++ + +E Sbjct: 5 LVVDDEKLIVKGLKFSLEQDDMEVDTAYDGGEAIEKIKANDYDIVLLDIMI--PVYTGIE 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH------HREILARVAAIY 116 + +++R S VP+I ++ + + G DD + KP + + + R + Sbjct: 63 VCQMVREFSNVPIIMLTAKGEDMDKIMGLEYGADDYITKPFNILEVKARIKAILRRSNRK 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + +N E ++V D R V G+ L +E +LE LMA+ K ++ ++ + Sbjct: 123 QAPAKPSNVMEINGMKVELDSRRVFVGGKELNLTAKEFDLLELLMAHPNKVYSRNELLNT 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 I+G + V+ H+ +LR+K+ N + +K +GY Sbjct: 183 IWGDS-YPGDARTVDVHVRRLREKIEANPGEPVYIHTKWGVGYFF 226 >gi|182438316|ref|YP_001826035.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|178466832|dbj|BAG21352.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] Length = 229 Score = 144 bits (364), Expect = 6e-33, Method: Composition-based stats. Identities = 44/219 (20%), Positives = 93/219 (42%), Gaps = 5/219 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + + +G + A+ D+ ++ L G +E Sbjct: 10 LVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLML--PGRDGIE 67 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLKV 121 + R+IRA S VP++ ++ + +SG DD + KP +E++AR+ A R + Sbjct: 68 VCRLIRAESGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEEP 127 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + G + + G + +G+ L E +L L + + + ++G + Sbjct: 128 APEQLTIGDLVIDVAGHSVKREGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWG-Y 186 Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219 A + +V H+ +LR K+ + V + R +GY Sbjct: 187 RHAADTRLVNVHVQRLRSKVEKDPERPEIVVTVRGVGYK 225 >gi|325914534|ref|ZP_08176878.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Xanthomonas vesicatoria ATCC 35937] gi|325539304|gb|EGD10956.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Xanthomonas vesicatoria ATCC 35937] Length = 227 Score = 144 bits (364), Expect = 6e-33, Method: Composition-based stats. Identities = 60/221 (27%), Positives = 102/221 (46%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 +L++D A +++ A +G +++ E ++ DV I+ L G ++ Sbjct: 3 ILLVEDEAPLRETLAARLKREGFAVDAAQDGEEGLYMGLEVPFDVGIIDLGLPKMSGMEL 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119 ++ R + P++ ++ S Q ++ G DD + KP H E+LARV A + R Sbjct: 63 IKALR--DEGKKFPVLILTARSSWQDKVEGLKQGADDYLVKPFHVEELLARVNALLRRAA 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S E GP+ + + V G L E ++LEYLM + G+ V+K + IY Sbjct: 121 GWSKPTLECGPVALDLAAQTVSVNGANVDLTSYEYKVLEYLMMHAGELVSKADLTEHIY- 179 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D + NV+E I +LRKKL P+++ R GY Sbjct: 180 QQDFDRDSNVLEVFIGRLRKKLDPDGELKPIETVRGRGYRF 220 >gi|317124213|ref|YP_004098325.1| transcriptional regulator [Intrasporangium calvum DSM 43043] gi|315588301|gb|ADU47598.1| two component transcriptional regulator, winged helix family [Intrasporangium calvum DSM 43043] Length = 247 Score = 144 bits (364), Expect = 6e-33, Method: Composition-based stats. Identities = 50/236 (21%), Positives = 92/236 (38%), Gaps = 21/236 (8%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS---AREDVSAIEAFLIGKGEK 59 +++DD A ++ A DG + + ++ R D++ ++ L Sbjct: 6 LVVDDEAQIRTVLRAYLEADGFVVSEAGTGGEALRQMTTANGQRPDLALLDVGL--PDLD 63 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 LE+ R +RA S + +I ++ L G DD + KP RE++ARV + RR Sbjct: 64 GLEVLRRVRAQSDLFVILVTARSEEVDKLVGLGIGADDYITKPFSPREVVARVKTVLRRR 123 Query: 120 K--------------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRG 165 N + + D R+ + L E +L G Sbjct: 124 HEAGAPDVGPDVDPATVANILRFEGLTIDEDRREVTTASDPVTLSTLEFDLLVAFAEAPG 183 Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220 + ++ Q+ ++G +D +E V++ HI LRK L + + + R +GY Sbjct: 184 RVFSRAQLLEKVWG-YDFYGDERVIDVHIRSLRKALADDASSPRVIGTVRGVGYKF 238 >gi|302551833|ref|ZP_07304175.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces viridochromogenes DSM 40736] gi|302469451|gb|EFL32544.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces viridochromogenes DSM 40736] Length = 229 Score = 144 bits (364), Expect = 6e-33, Method: Composition-based stats. Identities = 43/219 (19%), Positives = 89/219 (40%), Gaps = 5/219 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + + +G + ++ D+ ++ L G +E Sbjct: 10 LVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFRESKPDLVLLDLML--PGRDGIE 67 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R+IRA S VP++ ++ + +SG DD + KP +E++AR+ A RR + Sbjct: 68 VCRLIRAESGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEEP 127 Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + G + G+ L E +L L + + + ++G + Sbjct: 128 APEQLAIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWG-Y 186 Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219 A + +V H+ +LR K+ + V + R +GY Sbjct: 187 RHAADTRLVNVHVQRLRSKVEKDPEKPEIVVTVRGVGYK 225 >gi|260687106|ref|YP_003218240.1| two-component response regulator [Clostridium difficile R20291] gi|260213123|emb|CBE04540.1| two-component response regulator [Clostridium difficile R20291] Length = 247 Score = 144 bits (364), Expect = 6e-33, Method: Composition-based stats. Identities = 40/228 (17%), Positives = 86/228 (37%), Gaps = 10/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD + + + + N+ + + ++ G Sbjct: 21 ILIIDDDKELCALIKRSVQAENIEADFCNTGKEGLQKLREQEYQLVVLDVM--MPGMDGF 78 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL------ARVAAI 115 E IR +P++ + + + +G DD + KP E++ R Sbjct: 79 ETLEEIRKEYSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRRYTR 138 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + + + +++ + R F LP +E +L Y ++GK + K QI+ Sbjct: 139 FNQQAGAIQKLNFDGLQIDLENRSATTSNGTFELPPKEFDLLLYCAKHQGKILTKQQIYE 198 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 ++G + N + + IS+LRKKL N + + + +GY + Sbjct: 199 EVWGEEYFYDDSN-IMAIISRLRKKLEVNPSSPKYIQTVKGIGYRFNK 245 >gi|229073625|ref|ZP_04206740.1| Two-component response regulator [Bacillus cereus F65185] gi|229182223|ref|ZP_04309505.1| Two-component response regulator [Bacillus cereus 172560W] gi|228601238|gb|EEK58777.1| Two-component response regulator [Bacillus cereus 172560W] gi|228709480|gb|EEL61539.1| Two-component response regulator [Bacillus cereus F65185] Length = 342 Score = 144 bits (364), Expect = 6e-33, Method: Composition-based stats. Identities = 51/227 (22%), Positives = 94/227 (41%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ A ++G+ + L D+ ++ + Sbjct: 119 ILIVDDDKEIRNLISAYLENEGLKTQKAEDAMEALQLLEEKEFDLIILDIM--MPNMDGI 176 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E IR +P+I +S + SG DD ++KP + E++ARV + RR K Sbjct: 177 EACMKIREDRNIPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 236 Query: 122 SNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N+ V +D R V+G+ L +E ILE L N+G ++ +I+ Sbjct: 237 YNSSIGHNKSILEIGDLTVNTDTRQVWVRGKETRLTPKEFAILELLARNKGIVMSVAKIY 296 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220 A++ +N V HI+K+R K+ + + +GY I Sbjct: 297 EAVWEEV-FYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGYKI 342 >gi|218699328|ref|YP_002406957.1| DNA-binding transcriptional regulator BaeR [Escherichia coli IAI39] gi|218369314|emb|CAR17072.1| DNA-binding response regulator in two-component regulatory system with BaeS [Escherichia coli IAI39] Length = 240 Score = 144 bits (364), Expect = 6e-33, Method: Composition-based stats. Identities = 44/224 (19%), Positives = 88/224 (39%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + I + + + D+ ++ L G L Sbjct: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLML--PGTDGL 70 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 L R IR S +P++ ++ L + G DD + KP RE++ARV + Sbjct: 71 TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + P+ + +G++ L E R+L+ L GK ++ Q+ + +Y Sbjct: 131 QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190 Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + V + ++SHI LR+KL + + +GY + Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLEALDEEQSFIRAVYGVGYRWE 233 >gi|212709152|ref|ZP_03317280.1| hypothetical protein PROVALCAL_00185 [Providencia alcalifaciens DSM 30120] gi|212688064|gb|EEB47592.1| hypothetical protein PROVALCAL_00185 [Providencia alcalifaciens DSM 30120] Length = 229 Score = 144 bits (364), Expect = 6e-33, Method: Composition-based stats. Identities = 42/222 (18%), Positives = 93/222 (41%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D A +++ + +G + + D+ ++ + G G +V Sbjct: 5 ILVVEDEAPIREMVCFVLEQNGFQPTEADDYDSAIAQLVDPLPDLVLLDWMIPGGSGIQV 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ + A VP++ ++ + + + G DD + KP +E++ARV AI RR+ Sbjct: 65 IKHMKRDSATRDVPVMMLTARGEEEDRVKGLEVGADDYLIKPFSPKELIARVKAILRRIS 124 Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + E + + + E ++L + M + + ++ Q+ + ++ Sbjct: 125 PMSTEDIIEMNGLVLDPTSHRVTSNEIPIDMGPTEYKLLHFFMTHPERVYSREQLLNYVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G + VE+ V+ HI +LRK L V + R GY Sbjct: 185 GA-NVYVEDRTVDVHIRRLRKALELDGHDKMVQTVRGTGYRF 225 >gi|40021671|gb|AAR37056.1| VanRD5 [Enterococcus faecium] Length = 232 Score = 144 bits (364), Expect = 6e-33, Method: Composition-based stats. Identities = 41/232 (17%), Positives = 85/232 (36%), Gaps = 15/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +DG ++ F + + S D++ ++ L Sbjct: 5 ILVVDDEKELADLVEVYLKNDGYTVYKFYNGKDALKCIESVELDLAILDIML--PDVDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH----------HREILAR 111 ++ + IR P+I ++ S DD + KP + R Sbjct: 63 QICQKIREKFYFPVIMLTA-KVEDGDKIMGLSVADDYITKPFNPLEVVARVKAQLRQYMR 121 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + + + + + + G+ L E IL YL +G V+ Sbjct: 122 YKQPSLKQEAECTEYDIRGMTISKSSHKCILFGKEIQLTPTEFSILWYLCERQGTVVSTE 181 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 ++F A++G N V +HI +LR+K++ + + +GY+I+ Sbjct: 182 ELFEAVWGERYFD-SNNTVMAHIGRLREKMKEPSRNPKFIKTVWGVGYTIEK 232 >gi|15893741|ref|NP_347090.1| response regulator [Clostridium acetobutylicum ATCC 824] gi|15023306|gb|AAK78430.1|AE007559_8 Response regulator (CheY-like and HTH domains) [Clostridium acetobutylicum ATCC 824] gi|325507864|gb|ADZ19500.1| Response regulator (CheY-like and HTH domains) [Clostridium acetobutylicum EA 2018] Length = 227 Score = 144 bits (364), Expect = 6e-33, Method: Composition-based stats. Identities = 42/222 (18%), Positives = 97/222 (43%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + G + + +S+E + + ++ + + ++ L Sbjct: 4 ILLVEDDEALSMGIKYTLLSEKFEVIATSSIEEAKEVFNNEKISLVLMDLML--PDGSGY 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 +L R +R +S +P+I ++ + FD G DD + KP +E+++R+ A+ RR Sbjct: 62 DLCRELRKNSDIPIIFLTACDEEVNVVMGFDLGADDYITKPFKIKELISRIKAVLRRCSS 121 Query: 122 SNNRAETGPIR--VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +E + + L E ++L + N G+ + + I ++ Sbjct: 122 REEVSELKSRDVLIDKRTLKAYKNDKEIVLTHMELKLLILFIENSGQTLKRNLILQRLWD 181 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + +E V++N + +I +LR+KL+ + + R +GY + Sbjct: 182 ISEEFVDDNTLSVYIKRLREKLKEDSKNPYIVTVRGIGYRWN 223 >gi|304439017|ref|ZP_07398937.1| response regulator [Peptoniphilus duerdenii ATCC BAA-1640] gi|304372506|gb|EFM26092.1| response regulator [Peptoniphilus duerdenii ATCC BAA-1640] Length = 228 Score = 144 bits (364), Expect = 6e-33, Method: Composition-based stats. Identities = 46/225 (20%), Positives = 94/225 (41%), Gaps = 10/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++ DD + D +G + ++ E + D+ ++ E Sbjct: 5 LVCDDETAIADIIKFNLKREGYEADTCSNGEECLEILKDNEYDLLILDVM--MPKLDGFE 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 R +R S +P+I ++ + + G DD V KP RE++ARV A RR +V Sbjct: 63 TLRELRKFSYIPVIMLTAKDDEVDRVLGLELGADDYVVKPFSMRELIARVKANLRRREVE 122 Query: 123 NNRAETGPIR------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 E + + +G+ L RE +L++L N GK ++ ++ S+ Sbjct: 123 VKSVEVEETIERGDLEIDLKRYMVKKRGKTIELTLREFELLKFLAQNEGKVFSREELLSS 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++G ++ + V+ + +LR+K+ + + + + R +GY Sbjct: 183 VWG-YEYFGDIRTVDVTVRRLREKIEDKDKDYRYIVTVRGVGYYF 226 >gi|300721765|ref|YP_003711043.1| response regulator in two-component regulatory system with PhoR [Xenorhabdus nematophila ATCC 19061] gi|297628260|emb|CBJ88819.1| response regulator in two-component regulatory system with PhoR (or CreC), regulation of Pi uptake (OmpR family) [Xenorhabdus nematophila ATCC 19061] Length = 229 Score = 144 bits (364), Expect = 6e-33, Method: Composition-based stats. Identities = 42/222 (18%), Positives = 90/222 (40%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D +++ + +G + S D+ ++ L G G ++ Sbjct: 5 ILVVEDEVPIREMVCFVLEQNGYQAIEAEDYDTAIRRLSEPYPDLVLLDWMLPGGSGIQL 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ + +P+I ++ + + D G DD + KP +E++ARV A+ RR+ Sbjct: 65 IKHMKRDHNTKTIPVIMVTARAEEEDRVRGLDVGADDYITKPFSPKELIARVKAVLRRIS 124 Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + QG + E ++L + M + + ++ Q+ ++ Sbjct: 125 PMEAEEVINMDGLILDPSSHRVSSQGLDLNMGPTEFKLLHFFMTHPERVYSREQLLDYVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G + VE+ V+ HI +LRK L V + R GY Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALEAGKHDKMVQTVRGTGYRF 225 >gi|206974997|ref|ZP_03235912.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217959391|ref|YP_002337939.1| DNA-binding response regulator [Bacillus cereus AH187] gi|222095531|ref|YP_002529591.1| response regulator [Bacillus cereus Q1] gi|206747016|gb|EDZ58408.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217065539|gb|ACJ79789.1| DNA-binding response regulator [Bacillus cereus AH187] gi|221239589|gb|ACM12299.1| response regulator [Bacillus cereus Q1] Length = 232 Score = 144 bits (364), Expect = 6e-33, Method: Composition-based stats. Identities = 38/229 (16%), Positives = 85/229 (37%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +G + ++ E + ++ ++ ++ + Sbjct: 6 ILIVDDDQDIVRFMNVNLIQEGFKVFSAHNGEEALEIINNNSIQLAILDIM--MPQMDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR--------EILARVA 113 EL R IR +P++ +S S + F +G DD + KP ++ Sbjct: 64 ELCRRIREKHSLPIMFLSAKSSDVDKVVGFSTGADDYIVKPFSTIELIARVKAQLRRYTY 123 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 ++V + + + R + GE L + E IL + A + + +I Sbjct: 124 FNQNAVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYDILYLMAAAKNRVFTIEEI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + +++ N V HI++LR K+ + + +GY I+ Sbjct: 184 YESVWKERAYE-SNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIE 231 >gi|148378355|ref|YP_001252896.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 3502] gi|153933802|ref|YP_001382754.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|153934962|ref|YP_001386305.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|153938363|ref|YP_001389720.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|168177695|ref|ZP_02612359.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|148287839|emb|CAL81905.1| two-component response regulator [Clostridium botulinum A str. ATCC 3502] gi|152929846|gb|ABS35346.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|152930876|gb|ABS36375.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|152934259|gb|ABS39757.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|182670981|gb|EDT82955.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|295317808|gb|ADF98185.1| DNA-binding response regulator [Clostridium botulinum F str. 230613] Length = 228 Score = 144 bits (364), Expect = 6e-33, Method: Composition-based stats. Identities = 33/224 (14%), Positives = 84/224 (37%), Gaps = 9/224 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + ++ + + + E + DV ++ L G L Sbjct: 4 ILIVEDESSIRGFVKVNLKMNNFDVIEAETGEEGIEKARKHKPDVVVLDIML--PGVDGL 61 Query: 62 ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH----REILARVAAIY 116 E+ + + + + +I ++ + + G DD + KP + I A + + Sbjct: 62 EVCKTLRQEFPNMGIIMLTAKSQDTDKVSGLEYGADDYIIKPFNPLELTLRIKAILRRVN 121 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + +N GP ++ + E + E +++ + N GK + ++ Sbjct: 122 AVKESDDNIITGGPFKIDLYSKKIYKNEEEIDITPTEYLLMKIFIENPGKAFNRDELLDL 181 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYS 219 ++G +D + +V+ +I +LR K+ + + GY Sbjct: 182 VWG-YDFMGDSKIVDVNIRRLRSKIEETPSEPKFIKTVWGTGYR 224 >gi|90579403|ref|ZP_01235213.1| putative DNA-binding response regulator PhoB [Vibrio angustum S14] gi|90440236|gb|EAS65417.1| putative DNA-binding response regulator PhoB [Vibrio angustum S14] Length = 229 Score = 144 bits (364), Expect = 6e-33, Method: Composition-based stats. Identities = 38/222 (17%), Positives = 92/222 (41%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D A +++ + G + ++ ++ L G G + Sbjct: 5 ILVVEDEAPIREMLCFVLEQKGYQAIEAEDYDTALEKMCEPYPELILMDWMLPGGSGINL 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ + Q+P++ ++ + + + G DD + KP +E++AR+ A+ RR+ Sbjct: 65 IKHLKRDELTRQIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELMARLKAVMRRVS 124 Query: 121 VSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + ++ E + E ++L + M ++ + ++ Q+ + ++ Sbjct: 125 PTALDDVIDVQGLKLDPVSHRVTSDDEPLEMGPTEFKMLHFFMTHQERVYSREQLLNNVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G + VE+ V+ HI +LRK L + V + R GY Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALESGGHDKMVQTVRGAGYRF 225 >gi|15866137|gb|AAL10207.1|AF410884_3 MtrA [Mycobacterium avium subsp. paratuberculosis] Length = 225 Score = 144 bits (364), Expect = 6e-33, Method: Composition-based stats. Identities = 43/220 (19%), Positives = 85/220 (38%), Gaps = 5/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A + + + +G R D+ ++ L G + Sbjct: 5 ILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDLML--PGMNGI 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R++RA S VP++ ++ + +SG DD + KP +E++ARV A RR Sbjct: 63 DVCRVLRADSGVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRRNDD 122 Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + GE L E +L L + + + ++G Sbjct: 123 EPAEMLSIADVEIDVPAHKVTRNGEQISLTPLEFDLLVALARKPRQVFTRDVLLEQVWG- 181 Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219 + + +V H+ +LR K+ + V + R +GY Sbjct: 182 YRHPADTRLVNVHVQRLRAKVEKDPENPTVVLTVRGVGYK 221 >gi|320333505|ref|YP_004170216.1| winged helix family two component transcriptional regulator [Deinococcus maricopensis DSM 21211] gi|319754794|gb|ADV66551.1| two component transcriptional regulator, winged helix family [Deinococcus maricopensis DSM 21211] Length = 226 Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats. Identities = 49/224 (21%), Positives = 93/224 (41%), Gaps = 8/224 (3%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + ++++D + + A +G E L +AR D+ ++ L G Sbjct: 4 LILIVEDEPHLAEILEAYARQEGFRTERAADGNTAMTLFHAARPDLILLDLML--PGRSG 61 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIY 116 L++ R +RA + +I ++ + + G DD V KP RE++ARV Sbjct: 62 LDVLRSVRAEGRTGVILVTARAEETDQVVGLELGADDYVVKPFRPREVMARVRAVLRRTQ 121 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 L+ + G + V + V G L E R+L +L + G+ + ++ Sbjct: 122 EALEPLSAPTRVGALEVDTRAVSVRVHGAPLSLTPAEFRLLAHLASAPGRAFTREELLEG 181 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 L D E VV++H++ +R+KL + + R +GY + Sbjct: 182 A--LPDSDAMERVVDAHLTSVRRKLEANGAPGLLHTVRGVGYRL 223 >gi|304395459|ref|ZP_07377342.1| two component transcriptional regulator, winged helix family [Pantoea sp. aB] gi|304356753|gb|EFM21117.1| two component transcriptional regulator, winged helix family [Pantoea sp. aB] Length = 229 Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats. Identities = 37/222 (16%), Positives = 89/222 (40%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D A +++ + + + D+ ++ L G G + Sbjct: 5 ILVVEDEAPIREMLCFVLEQNDYQPIEAEDYDSAVGRLIEPWPDLILLDWMLPGGSGIQF 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ + +P++ ++ + + + G DD + KP +E++AR+ A+ RR+ Sbjct: 65 IKHLKREAMTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELMARIKAVMRRIS 124 Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 E + + + + E ++L + M + + ++ Q+ + ++ Sbjct: 125 PMAVEEVIEMQGLSLDPSSHRVMSETTPLEMGPTEYKLLHFFMTHPERVYSREQLLNHVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G + VE+ V+ HI +LRK L V + R GY Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALEVSGHDRMVQTVRGTGYRF 225 >gi|168334600|ref|ZP_02692753.1| two component transcriptional regulator, winged helix family protein [Epulopiscium sp. 'N.t. morphotype B'] Length = 232 Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats. Identities = 42/228 (18%), Positives = 89/228 (39%), Gaps = 14/228 (6%) Query: 4 LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63 +++D + D +G + E + + D+ ++ L + Sbjct: 6 VVEDEKAISDIIKYNLEKEGYEVLVAYDGEEGLEMILTTNPDIVLLDIM--MPKMDGLSV 63 Query: 64 PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123 +++R +P+I ++ + + G DD + KP RE++ARV A RR Sbjct: 64 CKLVRKTKNMPIIMLTAKAEEIDKVVGLELGADDYITKPFGMRELIARVKAQLRRGTSHE 123 Query: 124 NRAETGPIRVFSD----------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 P+ + + G++ L RE +L++L +GK + + Sbjct: 124 EIRIPEPLDENTIVEGNLRINLEKYEVTKSGKIIDLTLREFELLKFLAMQKGKVFTREIL 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220 ++G F+ + V+ + +LR+K+ + V +KR +GY Sbjct: 184 LEKVWG-FEYFGDVRTVDVTVRRLREKVEDDPAKATYVLTKRGVGYYF 230 >gi|258517267|ref|YP_003193489.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] gi|257780972|gb|ACV64866.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] Length = 226 Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats. Identities = 43/223 (19%), Positives = 101/223 (45%), Gaps = 9/223 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++D+ V+D L ++G +++ + S + +++ L G Sbjct: 6 ILIVDNDRNVRDVIKLLLVNEGFTVDESGDGNEALDIFSIHNYSLISLDVML--PGLDGW 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + IR S +P+I ++ L F+ GVDD + KP +E++AR+ A+ +R + Sbjct: 64 TVCKKIRERSNIPIIILTARDEEYAKLLGFELGVDDYITKPFSPKEVVARIKAVLKRANI 123 Query: 122 SN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + +T IR+ R+ + + L +E +L + + + + + ++ + + Sbjct: 124 IPLSEESFLKTDKIRINPSTREVYLDDKELKLTPKEYTLLYHFVKYKDQVFTREELLTEV 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G +D + V++HI ++R+KL + + +GY Sbjct: 184 WG-YDFYGDLRTVDTHIKQIREKLGEY--KKYISTVWGVGYKF 223 >gi|226314263|ref|YP_002774159.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226097213|dbj|BAH45655.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 231 Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats. Identities = 38/229 (16%), Positives = 82/229 (35%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D ++ + +G S++ S + D+ ++ L Sbjct: 4 ILIIEDDTVIAEVQKDYLEANGYSVDVATSGDRGLQKALQEEYDLLILDLMLPI--VDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV---------NKPIHHREILARV 112 E+ + +R +P++ +S + G DD + + Sbjct: 62 EICKQVRKVKNIPILLVSAKKEDIDKIRGLGLGADDHISKPFSLGELVARVKAHLARYDR 121 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + IR+ R + G +E +L +L+ + +KT+ Sbjct: 122 LVSDSKPLTAKEEIRLRGIRIDKLARRVYINGNEVAFTSKEYDLLLFLVTHPNWVFSKTE 181 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 +F I+GL D + V HISKLR+K+ + +++ +GY Sbjct: 182 LFEKIWGL-DSYGDIATVTVHISKLREKIESDPAKPQYIETVWGVGYRF 229 >gi|55981331|ref|YP_144628.1| response regulator [Thermus thermophilus HB8] gi|55772744|dbj|BAD71185.1| response regulator [Thermus thermophilus HB8] Length = 227 Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats. Identities = 44/217 (20%), Positives = 87/217 (40%), Gaps = 4/217 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D V A + G ++ + + D+ ++ L Sbjct: 4 ILLIEDDPEVARLVEAELKEAGFQVDWAKTGMEGLIRHREGKPDLVVLDLGL--PDLDGA 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IRA P++ ++ ++ + G DD + KP H E+ + R K Sbjct: 62 EVARRIRATDDTPILVLTAQDAVDRKVSLLTGGADDYLVKPFHPAEL-LARIQVQLRHKE 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + G + ++ R + L +E +L LM+ G+ + +I ++G Sbjct: 121 GSEVLAVGQLELYPGKRQVFFREREVRLSPKEFDLLHLLMSRPGRVFPRPEIEERVWGRP 180 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + NV++ H++ LR KLR + + + R +GY Sbjct: 181 -LGKDSNVLDVHMANLRAKLREAGAYGYLRTVRGVGY 216 >gi|103486311|ref|YP_615872.1| two component transcriptional regulator [Sphingopyxis alaskensis RB2256] gi|98976388|gb|ABF52539.1| two component transcriptional regulator, winged helix family [Sphingopyxis alaskensis RB2256] Length = 232 Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats. Identities = 48/223 (21%), Positives = 92/223 (41%), Gaps = 4/223 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 +LI+D + + + F +G S+ E L D+ ++ + G +V Sbjct: 6 LLLIEDDEAIAELIVWHFAREGFSVRQTPDGEQALVLVEERVPDIVLLDWMIESLPGIEV 65 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118 R + VP+I ++ + + ++G DD V KP RE+ R Sbjct: 66 CRRLRRNPKSANVPIIMLTARGEEEDRIRGLETGADDYVTKPFSPRELVARVSAVLRRLR 125 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++ I + S G+V + E R+L + M + G+ ++ Q+ +++ Sbjct: 126 PALAGEMLSYADIELDSVAHKVVRGGQVVTMGPTEFRLLRHFMEHPGRVFSRGQLLDSVW 185 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 G D +E V+ HI +LRK + D + + R GY++D Sbjct: 186 GQ-DSDIELRTVDVHIRRLRKAINLPGTSDIIRTVRSAGYALD 227 >gi|260654507|ref|ZP_05859997.1| phosphate regulon transcriptional regulatory protein PhoB [Jonquetella anthropi E3_33 E1] gi|260630784|gb|EEX48978.1| phosphate regulon transcriptional regulatory protein PhoB [Jonquetella anthropi E3_33 E1] Length = 237 Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats. Identities = 53/227 (23%), Positives = 96/227 (42%), Gaps = 10/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D A + D + G + L + R D+ ++ L G + Sbjct: 6 ILVIEDEAPIADILVQALKRSGYEASWAGDGDTGLELIMTGRPDLVLLDLML--PGLEGW 63 Query: 62 ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 E+ R +R P+I ++ + +G DD + KP E++ARV A RR Sbjct: 64 EVCRRMRQAPETRDTPVIMVTARRDESEAVAGLAAGADDYIRKPFSLAELMARVEAQLRR 123 Query: 119 LKVSNNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 ++ AE + + G L E +ILE L + G+ V++ +I + Sbjct: 124 RSMARQDAEETKDERIVLDQETGVVRIDGWEAELSPTEFQILELLASRPGRPVSRDRITA 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 ++GL E +++H+S+LRKKL + + R GY ++W Sbjct: 184 VVWGLD--PAESRALDTHLSRLRKKLSGCPDGPEITTLRSRGYRLEW 228 >gi|257439442|ref|ZP_05615197.1| DNA-binding response regulator VicR [Faecalibacterium prausnitzii A2-165] gi|257198101|gb|EEU96385.1| DNA-binding response regulator VicR [Faecalibacterium prausnitzii A2-165] Length = 247 Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats. Identities = 40/228 (17%), Positives = 86/228 (37%), Gaps = 10/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD + + + + N+ + + ++ G Sbjct: 21 ILIIDDDKELCTLIKRSVQAENIEADFCNTGKEGLQKLREQEYQLVVLDVM--MPGMDGF 78 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL------ARVAAI 115 E IR +P++ + + + +G DD + KP E++ R Sbjct: 79 ETLEEIRKEYSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRRYTR 138 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + + + +++ + R F LP +E +L Y ++GK + K QI+ Sbjct: 139 FNQQAGAIQKLNFYGLQIDLENRSVTTSNGTFELPPKEFDLLLYCAKHQGKILTKQQIYE 198 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 ++G + N + + IS+LRKKL N + + + +GY + Sbjct: 199 EVWGEEYFYDDSN-IMAIISRLRKKLEVNPSSPKYIQTVKGIGYRFNK 245 >gi|296135605|ref|YP_003642847.1| two component transcriptional regulator, winged helix family [Thiomonas intermedia K12] gi|295795727|gb|ADG30517.1| two component transcriptional regulator, winged helix family [Thiomonas intermedia K12] Length = 365 Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats. Identities = 42/233 (18%), Positives = 95/233 (40%), Gaps = 16/233 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ +G +++ + + ++ L GE L Sbjct: 130 ILVVDDDPGLRAMLRDYLTGNGFAVDLAAHGDAMRACLAQQMPHAVILDLML--PGEDGL 187 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R +R S +P++ +S + + G DD + KP RE+LAR+ A+ RR + Sbjct: 188 ALARELRRSSDLPILMLSARGEEIDRVIGLEVGADDYLPKPFSPRELLARLRALLRRAQP 247 Query: 122 S------------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 + GP + + G+ L E +L+ ++A+ + ++ Sbjct: 248 TSAGDLPPASKPAEQAVRFGPFLLDAAAFRLLRDGQDVGLSVAEFTLLQAMVAHPNRVLS 307 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221 + Q+ + G ++ + ++ +++LR+K+ + V + R GY + Sbjct: 308 RDQLIDWLKG-YERDAFDRSIDVRVARLRRKIEDDPARPVYVRTIRGQGYLFN 359 >gi|229096388|ref|ZP_04227360.1| Two-component response regulator vanR [Bacillus cereus Rock3-29] gi|229102503|ref|ZP_04233209.1| Two-component response regulator vanR [Bacillus cereus Rock3-28] gi|228680893|gb|EEL35064.1| Two-component response regulator vanR [Bacillus cereus Rock3-28] gi|228686950|gb|EEL40856.1| Two-component response regulator vanR [Bacillus cereus Rock3-29] Length = 243 Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats. Identities = 44/228 (19%), Positives = 90/228 (39%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +G ++ ++ E + ++ ++ ++ + Sbjct: 17 ILIVDDDLDIVQFINVNLTQEGFTVFSAHNGEEALEIINNNSIQLAILDIM--MPQMDGI 74 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL R IR +P++ +S S + F +G DD + KP E +ARV A RR Sbjct: 75 ELCRRIREKYSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 134 Query: 122 SNNRAETGPIR--------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 N A + + R ++ G+ + + E IL + A + + +I Sbjct: 135 FNQIAVQVMEKKINIKGLEIDEISRVVKIYGQTINVTKTEYDILHLMAAAKNRVFTIEEI 194 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + +++ N V HI++LR K+ + + +GY I Sbjct: 195 YESVWNERAYE-SNNTVMVHIARLRNKIEENPKEPRFIQNVWGVGYKI 241 >gi|227504192|ref|ZP_03934241.1| response regulator [Corynebacterium striatum ATCC 6940] gi|227199236|gb|EEI79284.1| response regulator [Corynebacterium striatum ATCC 6940] Length = 232 Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats. Identities = 41/231 (17%), Positives = 84/231 (36%), Gaps = 12/231 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V++ +G + + S ++ ++ L Sbjct: 3 ILVVDDEQAVRESLRRSLRFNGYDVLIASDGVEAVETVRSENPELLILDVM--MPNMDGL 60 Query: 62 ELPRIIRAHSQVPLI-GISDYPSLQTTLDFFDSGVDDVVNKPI--------HHREILARV 112 E+ R +R+ I ++ + + D+G DD + KP + Sbjct: 61 EVCRTLRSEGWDRSILVLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLVRRAA 120 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 A S + + + +D R+ + L R E +L+ LM + K +++ Sbjct: 121 ANSIGVKTASKTQLSFEDLHLNADTREVKRGERAISLTRTEFALLQLLMESPRKVLSRNT 180 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 I ++G +D N +E +I LRKK + + R +GY + N Sbjct: 181 ILEEVWG-YDFPSSGNALEVYIGYLRKKTEGGGESRLIHTVRGVGYVLREN 230 >gi|170757016|ref|YP_001782974.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] gi|169122228|gb|ACA46064.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] Length = 230 Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats. Identities = 39/227 (17%), Positives = 86/227 (37%), Gaps = 9/227 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + +G + + E S + ++ ++ Sbjct: 5 ILIVDDDKTIVEFLQIFLIKEGYEVRISYNGEEALDKIRSEQFNLILMDIM--MPKLDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-----ARVAAIY 116 E + IR + +P+I ++ S Q + F SG DD + KP E+ Sbjct: 63 EAIKRIRKLTNIPIIFLTAKDSQQDKIKGFISGCDDYITKPFDLVELSLRVSAILKRVST 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + + + + + + L +E IL L N+G+ ++I+ Sbjct: 123 SVAEENKDIIKVKDLELNLKEHTLYKEKNEIKLTPKEFDILFLLARNKGRIFPSSEIYER 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222 ++G + +N + +HI LR+KL + + + +GY I+ Sbjct: 183 VWGQ-EFLENDNSLLTHIRNLREKLSDTVKNSKYIKTVWGVGYKIEK 228 >gi|330950384|gb|EGH50644.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae Cit 7] Length = 227 Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats. Identities = 44/221 (19%), Positives = 83/221 (37%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + G S ++ + + ++ L G + Sbjct: 10 ILIVEDEPKLASLMRDYLIAAGYSTHCLSNGLDVVPAVRANAPQLILLDIML--PGRDGM 67 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + +R+ S VP++ I+ L D G DD + KP RE + R Sbjct: 68 DICKELRSFSDVPIVMITARVEEIDRLLGLDLGADDYICKPFSPRE-MVARVKAILRRSS 126 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 S+ ++V G L E R+L + G+ ++ + +Y Sbjct: 127 SSEPHTPKGLQVDEAHYQASFNGVTLDLTPVELRLLATFARSPGRVFSRDHLLDRLYSDH 186 Query: 182 DEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221 V + V+SHI LR+KL G DP+ S +GY ++ Sbjct: 187 -RVVTDRTVDSHIRNLRRKLEQACPGQDPIQSLYGVGYKLE 226 >gi|325103253|ref|YP_004272907.1| two component transcriptional regulator, winged helix family [Pedobacter saltans DSM 12145] gi|324972101|gb|ADY51085.1| two component transcriptional regulator, winged helix family [Pedobacter saltans DSM 12145] Length = 230 Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats. Identities = 42/227 (18%), Positives = 88/227 (38%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 +++DD + + +G + + + D+ ++ + G + Sbjct: 8 ILIVDDEPDILELIEYNLKKEGYQVFTATNGQDAITEARKTSPDLIILDVMMPKMDGIEA 67 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R + ++ ++ + + F+ G DD + KPI R +++R+ AI RR Sbjct: 68 CRIMRGMPEFKNTFMVFLTARIEEYSEIAGFNVGADDYIPKPIKPRALVSRINAILRRNL 127 Query: 121 VSNNRAETGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + I + D GE L ++E +L L + GK + I Sbjct: 128 QGEEETFSNKIEIADLVIDRDAFLVFKGGEKIVLAKKEFELLYLLASKPGKVYTREVILR 187 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 I+ V ++ HI KLR+KL++ + V + + +GY + Sbjct: 188 NIW-EDSVVVTNRTIDVHIRKLREKLKD----NYVTTVKGVGYKFEV 229 >gi|229110657|ref|ZP_04240221.1| DNA-binding response regulator [Bacillus cereus Rock1-15] gi|228672725|gb|EEL28005.1| DNA-binding response regulator [Bacillus cereus Rock1-15] Length = 225 Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats. Identities = 42/221 (19%), Positives = 93/221 (42%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L DD +++ +G + + + + ++ ++ Sbjct: 6 ILLADDDKHIRELLHYHLEKEGFKVFEAEDGKVAQEVLEKENIHLAIVDIM--MPFVDGY 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L IR + +P+I ++ L F SG DD + KP E++ R+ A+ RR ++ Sbjct: 64 TLCEEIRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQM 123 Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + T + G + + G+ LP +E +L L + G+ ++ ++ ++G+ Sbjct: 124 LSADIITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM 183 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D +E V+ H+ +LR + + + + R LGY ++ Sbjct: 184 -DFEGDERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 223 >gi|225568830|ref|ZP_03777855.1| hypothetical protein CLOHYLEM_04909 [Clostridium hylemonae DSM 15053] gi|225162329|gb|EEG74948.1| hypothetical protein CLOHYLEM_04909 [Clostridium hylemonae DSM 15053] Length = 231 Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 85/228 (37%), Gaps = 10/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D ++ ++ + S D++ ++ L Sbjct: 5 ILIVDDEQEIADLVALYLQNENFTVFKHYNALDALDCIRSETPDLAILDVM--MPDMDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL R IR + P+I ++ + G DD + KP E++ARV A RR K Sbjct: 63 ELCRNIREQYRYPVIMLTAKDGEIDKITGLTLGADDYITKPFLPLELVARVKAQLRRYKR 122 Query: 122 SN-------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N + + + + + + L E IL L +G+ V+ ++F Sbjct: 123 YNTGAGPDEDVIVHSGLVINVRTHECTLNEKPLSLTPTEFSILHILCRKKGEVVSSEELF 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221 I+ N + HI LR+K+ + + + GY I+ Sbjct: 183 HEIWNDEYFTKSNNTITVHIRHLREKMGDSFEDPKYIKTVWGCGYKIE 230 >gi|46810476|gb|AAT01619.1| PhoB [Pseudomonas stutzeri] Length = 229 Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 95/224 (42%), Gaps = 9/224 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A +++ + G + + L + D+ ++ L G + Sbjct: 6 ILIVDDEAPIREMIVVALEMAGYDCLEAENTQQAHALIIDRKPDLILLDWML--PGTSGI 63 Query: 62 ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IY 116 EL R ++ + P+I ++ + + G DD + KP RE++AR+ A Sbjct: 64 ELARRLKRDELTADTPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 S + E G + + + G+ + E R+L++ M ++ + ++Q+ Sbjct: 124 ATPVDSESPIEIGGLLLDPVSHRVTIDGKPAEMGPTEYRLLQFFMTHQERAYTRSQLLDQ 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + VEE V+ HI +LRK L + V + R GY Sbjct: 184 VWG-GNVYVEERTVDVHIRRLRKALGEAYE-NLVQTVRGTGYRF 225 >gi|301053448|ref|YP_003791659.1| response regulator [Bacillus anthracis CI] gi|300375617|gb|ADK04521.1| response regulator [Bacillus cereus biovar anthracis str. CI] Length = 232 Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats. Identities = 40/229 (17%), Positives = 84/229 (36%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +G + ++ E + + ++ ++ + Sbjct: 6 ILIVDDDQDIVRFMNVNLMQEGFKVFSAHNGEEALEIVNYNSIQLAILDIM--MPQMDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARVA 113 EL R IR +P+I +S S + F +G DD + KP E Sbjct: 64 ELCRRIREKHSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 123 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 ++V + + + R + GE L + E IL + A + + +I Sbjct: 124 FNQNAVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYEILYLMAAAKNRVFTIEEI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221 + +++ N V HI++LR K+ + + + +GY I+ Sbjct: 184 YESVWKERAYE-SNNTVMVHIARLRNKIEEDPKEPKFIQNVWGVGYKIE 231 >gi|291550513|emb|CBL26775.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus torques L2-14] Length = 224 Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats. Identities = 56/225 (24%), Positives = 100/225 (44%), Gaps = 10/225 (4%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 M ++D +++ I G+ GF + ++ ++ L GE Sbjct: 1 MIFCVEDDDNIRELVIYTLETTGLEARGFADGTAFMEALAFDTPELVLLDIML--PGEDG 58 Query: 61 LELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--I 115 LE+ + ++ S +P+I ++ S + DSG DD V KP E+++R+ A Sbjct: 59 LEILKKLKNSSKTKDIPVIMVTAKGSEYDKVVGLDSGADDYVTKPFGMMELISRIKAVLR 118 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + G I + + + +V GE L +E +LE LM N+G + + Q+ + Sbjct: 119 RSGKQQDKTKLSVGGISLDTKKHEVKVDGEQVVLTLKEFELLEKLMRNQGIVLTRDQLLT 178 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I+G +D E V+ HI LR+KL + V + R +GY I Sbjct: 179 EIWG-YDFDGETRTVDVHIRTLRQKLGEQGS--LVKTVRGVGYRI 220 >gi|283851972|ref|ZP_06369248.1| two component transcriptional regulator, winged helix family [Desulfovibrio sp. FW1012B] gi|283572696|gb|EFC20680.1| two component transcriptional regulator, winged helix family [Desulfovibrio sp. FW1012B] Length = 230 Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats. Identities = 44/224 (19%), Positives = 87/224 (38%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ +G ++ S L +S DV ++ L Sbjct: 8 ILIVDDEPPIRRFLSPFLEAEGYAVIEAGSGHEALSLIASHGPDVILLDLGL--PDMDGE 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH----HREILARVAAIYR 117 EL R + + +I +S + + D G D + KP I + Sbjct: 66 ELLRTLPVWLRAKVIVLSVRSRERDKVTALDLGASDYLTKPFSLGELAARIRVCLRRGGS 125 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + +R G + + + ++GE L E ++L YL + GK V +Q+ + Sbjct: 126 DGESPPSRYTFGELSLDLEAHVASLKGEDLHLTPTEFKLLAYLARHAGKVVTHSQLLREV 185 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 +G +E+ V HI KLR+K+ + + ++ +GY + Sbjct: 186 WGK-QSQGQEHYVRIHIHKLRQKIESDPARPRYLHTETGIGYRL 228 >gi|153815879|ref|ZP_01968547.1| hypothetical protein RUMTOR_02124 [Ruminococcus torques ATCC 27756] gi|317500635|ref|ZP_07958854.1| hypothetical protein HMPREF1026_00797 [Lachnospiraceae bacterium 8_1_57FAA] gi|331089885|ref|ZP_08338778.1| hypothetical protein HMPREF1025_02361 [Lachnospiraceae bacterium 3_1_46FAA] gi|145846698|gb|EDK23616.1| hypothetical protein RUMTOR_02124 [Ruminococcus torques ATCC 27756] gi|316897953|gb|EFV20005.1| hypothetical protein HMPREF1026_00797 [Lachnospiraceae bacterium 8_1_57FAA] gi|330403582|gb|EGG83140.1| hypothetical protein HMPREF1025_02361 [Lachnospiraceae bacterium 3_1_46FAA] Length = 230 Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats. Identities = 44/227 (19%), Positives = 84/227 (37%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + D +E N + D+ ++ L G Sbjct: 5 ILIVEDEESIADLEKDYLELSNFEVEVANDGDTGLQKGLGGDFDLIILDLML--PGVDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR P+I +S + G DD + KP E++ARV A R + Sbjct: 63 EICRQIRDQKNTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARYER 122 Query: 122 SNNRAETGPI-------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N ++ + R V GE +E +L +L ++ K ++F Sbjct: 123 LINSNAEENEVIEIRGLKIDTTARRVWVGGEERSFTTKEFDLLTFLASHPNHVYTKEELF 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 I+ + + + V HI K+R+K+ + +++ +GY Sbjct: 183 REIWDM-ESIGDIATVTVHIKKIREKIEYDTSHPQYIETIWGVGYRF 228 >gi|329890384|ref|ZP_08268727.1| phosphate regulon transcriptional regulatory protein PhoB [Brevundimonas diminuta ATCC 11568] gi|328845685|gb|EGF95249.1| phosphate regulon transcriptional regulatory protein PhoB [Brevundimonas diminuta ATCC 11568] Length = 229 Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats. Identities = 49/225 (21%), Positives = 95/225 (42%), Gaps = 4/225 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D + +G + E D+ ++ L G +V Sbjct: 5 ILVMEDEDALATLLQYNLEKEGYDVAVAADGEEGMLQIDERTPDLILLDWMLPKLSGIEV 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 R +P+I ++ + D+G DD + KP E+ AR+ A+ RR++ Sbjct: 65 CRRVRGRAETRNLPIIMLTARGEETDRVRGLDTGADDYMTKPFSMTELTARIRAVLRRIR 124 Query: 121 V--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 +++R I + G L E R+L++ + + G+ ++ Q+ A++ Sbjct: 125 PGLADDRVNHADIIMDRVAHRVSRAGREVHLGPTEFRLLDHFLKHPGRVFSREQLLDAVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 G D VE V+ H+ +LRK L + +P+ + R GYS+D N Sbjct: 185 G-SDVYVEARTVDVHVGRLRKALNVEGTVNPIRTVRSAGYSLDLN 228 >gi|224825947|ref|ZP_03699050.1| two component transcriptional regulator, winged helix family [Lutiella nitroferrum 2002] gi|224601584|gb|EEG07764.1| two component transcriptional regulator, winged helix family [Lutiella nitroferrum 2002] Length = 241 Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats. Identities = 44/230 (19%), Positives = 90/230 (39%), Gaps = 13/230 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++D + G G +++ + + R D+ ++ GE L Sbjct: 6 ILVVDDDAKLRDLLVRYLGQQGYTVDTLPDARELQRKLARNRPDLMVLDVM--MPGEDGL 63 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILAR 111 + R +RA ++ P+I ++ + + G DD + KP + RE Sbjct: 64 AVVRRLRAQGEMVPVIMLTARGEDIDRILGLEMGADDYLPKPFNPRELVARIQSVLRRHN 123 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + E GP + R+ Q +V L E +L L ++ + + + Sbjct: 124 ATPALAARHEEGDAIEFGPFTLHLGRRELTHQDKVVTLTSAEYAVLAVLASHPRRPMTRE 183 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 Q+ G + + ++ HIS+LR+ L ++ G + + GY Sbjct: 184 QLMEMALGKGNGESLDRSIDVHISRLRRALDTDEGGPRYIQTVWGYGYVF 233 >gi|52841668|ref|YP_095467.1| transcriptional regulatory protein CpxR [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|54294527|ref|YP_126942.1| transcriptional regulatory protein CpxR [Legionella pneumophila str. Lens] gi|33415232|gb|AAQ18123.1| CpxR [Legionella pneumophila] gi|52628779|gb|AAU27520.1| transcriptional regulatory protein CpxR [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|53754359|emb|CAH15843.1| transcriptional regulatory protein CpxR [Legionella pneumophila str. Lens] gi|307610141|emb|CBW99687.1| transcriptional regulatory protein CpxR [Legionella pneumophila 130b] Length = 226 Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats. Identities = 48/224 (21%), Positives = 89/224 (39%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD + D +G ++ + E + D ++ L Sbjct: 5 ILIIDDDTELTDLLTQYLEPEGFNVVCVHDGENGVKRALNQVFDAIILDVML--PKLNGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 E+ + IR H + P++ ++ + + G DD + KP + RE++AR+ ++ Sbjct: 63 EVLKAIREHLETPVLMLTARGDDIDRIVGLEIGADDYLPKPCNPRELVARLRAILRRTQK 122 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + E I V R + G+ L E ILE L+ + G+ +K ++ Sbjct: 123 IPTPKPIIEQHNIIVDCSKRHVTMGGKFLELTNAEFNILEMLIKSPGQAFSKEELTEYAL 182 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 G + ++ HIS LR KL + G V + R GY + Sbjct: 183 GRK-YTAYDRSIDVHISNLRNKLGDNPQGEPLVKTVRGFGYMFN 225 >gi|310780606|ref|YP_003968937.1| two component transcriptional regulator, winged helix family [Ilyobacter polytropus DSM 2926] gi|309749929|gb|ADO84589.1| two component transcriptional regulator, winged helix family [Ilyobacter polytropus DSM 2926] Length = 221 Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats. Identities = 49/222 (22%), Positives = 92/222 (41%), Gaps = 7/222 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + DDG +++ + + + + D+ ++ L + Sbjct: 5 ILIVEDEKELALIIGKSMEDDGFNVKIAHDGDKAMEIFYDDKPDLVLLDINL--PKKNGW 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IRA S +P+I ++ S + + G DD + KP L V Sbjct: 63 EICKEIRAVSNIPVIMMTARDSELDEIQGLELGADDYITKP--FSLKLISVKVKKLLKLE 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + + GE L RRE LEY ++G +++ + + I+G F Sbjct: 121 RDTFFRIKDLTFDFKSYILTIDGETIDLSRREAHALEYFFKHKGIILSREILLNEIWG-F 179 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 D +E V++ I +LRKKL D + S R +GY + N Sbjct: 180 DFFGDERAVDTLIKRLRKKLGKYS--DYIKSIRGVGYVFNEN 219 >gi|291458665|ref|ZP_06598055.1| DNA-binding response regulator SrrA [Oribacterium sp. oral taxon 078 str. F0262] gi|291419198|gb|EFE92917.1| DNA-binding response regulator SrrA [Oribacterium sp. oral taxon 078 str. F0262] Length = 225 Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats. Identities = 47/220 (21%), Positives = 96/220 (43%), Gaps = 5/220 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD ++ + E L + D+S + ++ Sbjct: 7 LVVDDEERMRKLISDFLKAKDFEVLEAADGEEAIDLFFEEK-DISLLILDVMMPKMDGWA 65 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLKV 121 + + IR HS+VP+I ++ L F+ G D+ ++KP + ++ARV A + R Sbjct: 66 VLKSIREHSRVPVIMLTARSEETDELRGFEYGADEYISKPFSPKILVARVEALLRRSGIQ 125 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 G I + V G+ L +E +L Y + NRG +++ +I + ++ + Sbjct: 126 QEETVSVGGIEIDKSAHSVRVDGKELELSFKEYELLLYFVENRGIALSREKILNNVW-NY 184 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D + +++H+ KLR KL++K + + + +GY D Sbjct: 185 DYFGDARTIDTHVKKLRAKLKSKG--EYIRTVWGMGYKFD 222 >gi|228476582|ref|ZP_04061264.1| response regulator [Streptococcus salivarius SK126] gi|322373913|ref|ZP_08048448.1| DNA-binding response regulator CsrR [Streptococcus sp. C150] gi|228251777|gb|EEK10842.1| response regulator [Streptococcus salivarius SK126] gi|321277285|gb|EFX54355.1| DNA-binding response regulator CsrR [Streptococcus sp. C150] Length = 229 Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats. Identities = 38/225 (16%), Positives = 85/225 (37%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G + ++ + D+ ++ L Sbjct: 5 ILIVEDEKNLARFVSLELQHEGYDVVTADNGREGLEMALEKDFDLILLDLML--PEMDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI------HHREILARVAAI 115 E+ R ++ ++ ++ S+ + D G DD + KP R I Sbjct: 63 EVTRRLQQEKDTYIMMMTARDSIMDIVAGLDRGADDYIVKPFAIEELLARIRATFRRQDI 122 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + +++ R E PL +RE +L L++N + + + ++ Sbjct: 123 EAAKNAPAKASTYRDLKLDVQNRTVVRGDEAIPLTKREFDLLNTLLSNMNQVMTREELLL 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +D+A+E NVV+ +I LR K+ + + R +GY I Sbjct: 183 QVW-KYDDAIETNVVDVYIRYLRGKIDVPGKESYIQTVRGMGYVI 226 >gi|49481373|ref|YP_038858.1| DNA-binding response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49332929|gb|AAT63575.1| DNA-binding response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 229 Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats. Identities = 51/229 (22%), Positives = 88/229 (38%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++++ F + + + + D+ ++ L Sbjct: 5 ILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIML--PELDGW 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR-------EILARVAA 114 + R IR S+VP+I ++ TL F+ G DD V KP +L Sbjct: 63 SVCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKV 122 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + L+ ++ I V R V L E IL Y M N G + + Q+ Sbjct: 123 TKQLLENEDDILSIHGIHVHFPSRTVTVDKTDINLTHTEFEILAYFMKNPGIVLTREQLI 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 S I+G ++ A ++ V SHI LR KL K + + GY + N Sbjct: 183 SRIWG-YEFAGDDRTVNSHIRNLRNKLGEK--AKYITTVVRTGYKFEGN 228 >gi|104773776|ref|YP_618756.1| two-component system, response regulator [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116513782|ref|YP_812688.1| DNA-binding response regulator [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|300812476|ref|ZP_07092902.1| putative alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|103422857|emb|CAI97517.1| Two-component system, response regulator [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116093097|gb|ABJ58250.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|300496537|gb|EFK31633.1| putative alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|325125438|gb|ADY84768.1| Response regulator [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 241 Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats. Identities = 41/235 (17%), Positives = 77/235 (32%), Gaps = 17/235 (7%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D V F +G E + + D I L + + Sbjct: 3 ILMVEDDKSVSQMMELFFKKEGWEQVSAYDGEEAVEIFQTHPRDFDIITLDLNLPKKDGI 62 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNK--------------PIHHR 106 ++ + IR S+ P+I ++ S + G DD V K Sbjct: 63 QVAKEIRRISETVPIIMLTARDSESDQVLGLGVGADDYVTKPFSPIALIARIKALHRRVM 122 Query: 107 EILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166 + S + V L +E +L + + Sbjct: 123 LEGQPRNLPKNIPSNDFDLETNHIRISKSRREVYFDENRVEGLTPKEFDLLYTMAQKPKQ 182 Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ Q+ ++G ++ EE V++HI KLR+KL K G + + +GY D Sbjct: 183 VFSREQLLELVWG-YEYFGEERTVDAHIKKLRQKLE-KSGPQIIQTVWGVGYKFD 235 >gi|226946855|ref|YP_002801928.1| phosphate regulon response regulator PhoB [Azotobacter vinelandii DJ] gi|226721782|gb|ACO80953.1| phosphate regulon response regulator; PhoB [Azotobacter vinelandii DJ] Length = 229 Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats. Identities = 49/224 (21%), Positives = 95/224 (42%), Gaps = 9/224 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A +++ G + + + R D+ ++ L G + Sbjct: 6 ILIVDDEAPIREMIAVALEMAGYECLEAENTQQAHAIIVDRRPDLILLDWML--PGTSGI 63 Query: 62 ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 EL R ++ + +PLI ++ + + G DD + KP RE++AR+ A+ RR Sbjct: 64 ELARRLKRDELTTGIPLIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123 Query: 119 LKVSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 +N R+ + G+ + E R+L++ M ++ + + Q+ Sbjct: 124 TAPGDNETPIEVGGLRLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAYTRGQLLDQ 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + VEE V+ HI +LRK L + V + R GY Sbjct: 184 VWG-GNVYVEERTVDVHIRRLRKALGEAYE-NLVQTVRGTGYRF 225 >gi|326334181|ref|ZP_08200404.1| DNA-binding response regulator MtrA [Nocardioidaceae bacterium Broad-1] gi|325947972|gb|EGD40089.1| DNA-binding response regulator MtrA [Nocardioidaceae bacterium Broad-1] Length = 235 Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats. Identities = 48/219 (21%), Positives = 91/219 (41%), Gaps = 5/219 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD A + + + +G + + S + DV ++ L G +E Sbjct: 16 LVVDDDASLSEMLAIVLRQEGFDSQLVARGDLALPAFHSYKPDVVLLDLML--PGMDGIE 73 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + IR S VP++ ++ + +SG DD V KP +E++AR+ A RR S Sbjct: 74 VCKQIRKESGVPIVMLTAKGDTVDVVVGLESGADDYVVKPFKPKELIARIRARVRRHGES 133 Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + G GE L E +LE L + ++ + ++G + Sbjct: 134 LPEILEIGDLTIDVAGHQVTRGGEQIQLTPLEFDLLECLARKPHQVFSREVLLEQVWG-Y 192 Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219 A + +V H+ +LR K+ + + V + R +GY Sbjct: 193 RHAADTRLVNVHVQRLRSKVEHDPENPEIVVTVRGVGYK 231 >gi|288555474|ref|YP_003427409.1| two-component response regulator [Bacillus pseudofirmus OF4] gi|288546634|gb|ADC50517.1| two-component response regulator [Bacillus pseudofirmus OF4] Length = 246 Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats. Identities = 45/226 (19%), Positives = 85/226 (37%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + +G + + E +S + ++ L Sbjct: 16 ILVIEDDREISKILNEYLIREGYKVVMAHDGEDGLRRFASIHPHLLLVDLML--PKVDGF 73 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115 E+ R +R S+VP+I +S S + G DD + KP E+ R Sbjct: 74 EVCRQVRQQSEVPIIVVSARQSDIDKIHSLGLGADDYITKPFSPLELVARVKSHLRRYHR 133 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 Y LK + + ++ R E G+ L +E +L L G+ +K Q+++ Sbjct: 134 YNGLKEQEKVLSFDGLTINTNRRMVENDGKPLTLTMKEFELLLTLAEAPGQVFSKEQLYN 193 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++ D + V HI +R+KL + +D+ +GY Sbjct: 194 RVWKQDDAD-DIRTVTVHIKNVRRKLGDGSKHPRFIDTVWGIGYKF 238 >gi|332980720|ref|YP_004462161.1| winged helix family two component transcriptional regulator [Mahella australiensis 50-1 BON] gi|332698398|gb|AEE95339.1| two component transcriptional regulator, winged helix family [Mahella australiensis 50-1 BON] Length = 223 Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats. Identities = 38/223 (17%), Positives = 90/223 (40%), Gaps = 8/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ +G + + L D+ ++ Sbjct: 4 ILVVDDEPKIRELIRKYAIFEGHEIVEAENGMQAIELCRRHNFDIIILDVM--MPELDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL---ARVAAIYRR 118 IR P++ +S + F+ GVDD V KP +E++ + R+ Sbjct: 62 STCHEIRKICDTPVLMLSARGEEYDRIHGFELGVDDYVVKPFSPKELMLRVDAIMKRTRK 121 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + ++ + + E+ G+ L RE +L Y++ N+ +++ ++ ++ Sbjct: 122 AETESDAFIYERLSINFAAHTVEIDGQRIDLSPRESDLLFYMVRNKNIALSRDKLMQEVW 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 G +D ++ +++H+ LRKKL+ + + R +GY + Sbjct: 182 G-YDFYGDDRTLDTHVKLLRKKLKEYS--RLIVTVRGVGYRFE 221 >gi|317500101|ref|ZP_07958336.1| regulatory protein VanR [Lachnospiraceae bacterium 8_1_57FAA] gi|331087672|ref|ZP_08336599.1| hypothetical protein HMPREF1025_00182 [Lachnospiraceae bacterium 3_1_46FAA] gi|316898586|gb|EFV20622.1| regulatory protein VanR [Lachnospiraceae bacterium 8_1_57FAA] gi|330410364|gb|EGG89797.1| hypothetical protein HMPREF1025_00182 [Lachnospiraceae bacterium 3_1_46FAA] Length = 230 Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats. Identities = 44/224 (19%), Positives = 87/224 (38%), Gaps = 9/224 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + +G S + R V ++ L G E Sbjct: 8 LIVEDDVNINGLLKEALEKEGYICTQAFSGTEARMILQGERYSVILLDLML--PGIPGEE 65 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR P+I ++ ++ ++F G DD V KP +E+ ARV RR + + Sbjct: 66 VLRDIRKKGNTPVIILTAKDTIDDKVEFLRGGADDYVTKPFDIKEVTARVEVQIRRAETT 125 Query: 123 NNRAETGPIRVFSDGRDPEVQGEV------FPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + E + + ++E ILE L+ + K +K ++F Sbjct: 126 GRKEEEHRFTYQELELNKGDFTVKVGNTELPHITKQEFSILELLLKHPKKVFSKEEMFEY 185 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + E ++ HIS +RKK++ + +++ +GY + Sbjct: 186 AW-EEQYMGETKTLDVHISNIRKKIKAVTDKEYIETVWGIGYRL 228 >gi|315304164|ref|ZP_07874543.1| response regulator SaeR [Listeria ivanovii FSL F6-596] gi|313627471|gb|EFR96225.1| response regulator SaeR [Listeria ivanovii FSL F6-596] Length = 229 Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats. Identities = 44/224 (19%), Positives = 84/224 (37%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L+DD + D +G + N+ E L S D+ ++ Sbjct: 4 ILLVDDEETIVDVCRRYLEKEGFRVLTANNGEVALQLYKSEHVDLLVVDIM--MPKMDGH 61 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118 L I+ P + +S + L G DD ++KP RE++ RV + Sbjct: 62 TLVMEIQELEKDTPFLYLSALTQEKERLYGLTLGADDYMSKPFSPRELVLRVKNILRRSK 121 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + G + + R V E L +E +L L + + +K+++ ++ Sbjct: 122 RSSEPETLKHGSLFLDKSKRLVLVNQEELELTIKEFDLLWLLASENKRVFSKSELLERVW 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221 G ++ + N + HI LR+KL+ + + LGY + Sbjct: 182 G-YEYDGDANTINVHIHHLREKLQANDEKVIFIKTVWGLGYKFE 224 >gi|251773087|gb|EES53641.1| two component transcriptional regulator, winged helix family [Leptospirillum ferrodiazotrophum] Length = 232 Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats. Identities = 47/223 (21%), Positives = 89/223 (39%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++I+D + +G E + L + D ++ L G G V Sbjct: 5 ILMIEDDPDIAGLIHHYLKMEGFECEHVSDGTAGLSLARRLKPDAILLDLMLPGIDGLTV 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117 L + A S P++ ++ + + G DD + KP H +E++ARV Sbjct: 65 NRLIKQDPAISATPVVIVTAKGEETDRVVGLEMGADDYIVKPFHPKEMVARVKAVLRRRE 124 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + R GP+ + + +G PL +E +L LM G+ + + + + + Sbjct: 125 TQQRLTERMSIGPVTIDIGRHEATFEGIPAPLTAKEFDLLVALMRVAGRVLDRETLLNTV 184 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G D + V+ HI +LRKK+ V++ + +GY Sbjct: 185 WG-DDYEGTDRTVDVHIRRLRKKMGESAA--WVETVKQIGYRF 224 >gi|255532416|ref|YP_003092788.1| response regulator receiver [Pedobacter heparinus DSM 2366] gi|255345400|gb|ACU04726.1| response regulator receiver [Pedobacter heparinus DSM 2366] Length = 229 Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats. Identities = 43/225 (19%), Positives = 86/225 (38%), Gaps = 10/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 +++DD + + +G + + + + D+ ++ + G + Sbjct: 8 ILIVDDEPDILELIEYNLKKEGYQVYLAGNGQEGITIAKKVHPDLIILDIMMPKMDGIEA 67 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIY 116 L R I ++ ++ + + F+ G DD + KPI R I A + Sbjct: 68 CRLMRAIPEFKNTFMVFLTARSEEYSEIAGFNVGADDYIAKPIKPRALVSRINAILRRNS 127 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 VS+N+ E G + + + G+ L ++E +L L + GK + I Sbjct: 128 STDDVSDNKVEIGDLVIDREAYLVYQNGQKVVLAKKEFELLYLLASKPGKVYTRESILKN 187 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 I+ V ++ HI KLR+KL V + + +GY + Sbjct: 188 IW-EDSVVVTNRTIDVHIRKLREKLGET----YVATVKGVGYKFE 227 >gi|261340522|ref|ZP_05968380.1| DNA-binding response regulator BaeS [Enterobacter cancerogenus ATCC 35316] gi|288317617|gb|EFC56555.1| DNA-binding response regulator BaeS [Enterobacter cancerogenus ATCC 35316] Length = 240 Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats. Identities = 48/224 (21%), Positives = 87/224 (38%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + I G + N + D+ ++ L G L Sbjct: 13 ILIVEDEPKLGQLLIDYLRAAGYAPTLINHGDHVLPYVRQTPPDLILLDLML--PGTDGL 70 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 L R IR S VP++ ++ L + G DD + KP RE++ARV R Sbjct: 71 TLCREIRRFSDVPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCRP 130 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + P+ V + ++ L E R+L+ L GK ++ Q+ + +Y Sbjct: 131 QRELQVLDAESPLIVDESRFQASWRSKLLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190 Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + V + ++SHI LR+KL + + +GY + Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLEALDADQSFIRAVYGVGYRWE 233 >gi|255658861|ref|ZP_05404270.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Mitsuokella multacida DSM 20544] gi|260849265|gb|EEX69272.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Mitsuokella multacida DSM 20544] Length = 230 Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats. Identities = 46/227 (20%), Positives = 87/227 (38%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + + + D+ ++ L G Sbjct: 4 ILIVEDDREIAELERDYLEASDFEVAIEGDGRKGVEAALAGGFDLVILDLML--PGIDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R +R +P+I +S + + F G DD + KP E++ARV A R + Sbjct: 62 NVCRRLREELDIPVIIVSARQTDIDKIRGFGLGADDYMTKPFSPSELVARVKAHIARYEQ 121 Query: 122 SNNRAETGPIRVFS-------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + R+ GE L RE +L +LM NRG ++ +F Sbjct: 122 LTRKEQQCVARLSCGKLALEAKSHRVFKDGEEIHLTNREFELLRFLMENRGLVFSRETLF 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 I+GL D + V HI+++R+K+ + +++ R GY Sbjct: 182 ERIWGL-DAMGDNATVAVHINRIREKIETDPAHPAYIETVRGAGYRF 227 >gi|218903029|ref|YP_002450863.1| DNA-binding response regulator [Bacillus cereus AH820] gi|218538582|gb|ACK90980.1| DNA-binding response regulator [Bacillus cereus AH820] Length = 232 Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats. Identities = 39/229 (17%), Positives = 83/229 (36%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +G + + E + ++ ++ ++ + Sbjct: 6 ILIVDDDQDIVRFMNVNLMQEGFKVFSAYNGEEALEIINNNSIQLAILDIM--MPQMDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARVA 113 EL R IR +P+I +S S + F +G DD + KP E Sbjct: 64 ELCRRIREKHSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 123 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 ++V + + + R + GE L + + IL + A + + +I Sbjct: 124 FNQHAVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTKYDILFLMAAAKNRVFTIEEI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + +++ N V HI++LR K+ + + +GY I+ Sbjct: 184 YESVWKERAYE-SNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIE 231 >gi|121534003|ref|ZP_01665829.1| two component transcriptional regulator, winged helix family [Thermosinus carboxydivorans Nor1] gi|121307514|gb|EAX48430.1| two component transcriptional regulator, winged helix family [Thermosinus carboxydivorans Nor1] Length = 228 Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats. Identities = 43/223 (19%), Positives = 86/223 (38%), Gaps = 10/223 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++DD + F +G + + L D++ ++ L Sbjct: 5 IAIVDDDKKIVALLKTYFEKEGFVVYEAHDGAEGLRLIQDKTPDIAVLDVML--PQLDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYR 117 E+ R +R +P+I ++ L + G DD V KP RE++ARV + Sbjct: 63 EICRKLRKEGNIPIIMLTARDEETDKLIGLELGADDYVVKPFSPREVVARVKAILRRSGK 122 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + +++ G + + ++ L E ++L L +N + ++ QI I Sbjct: 123 GTEDTSDVITAGRLAIDRTRHVVKIDDIPLELTPTEFKLLALLASNPERVFSRLQIIEHI 182 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G + E V++H+ LR+KL + + + +GY Sbjct: 183 QG-YSFEGYERTVDAHVKNLRRKLGDA---QYIQTVYGIGYKF 221 >gi|50955386|ref|YP_062674.1| two-component system, regulatory protein [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951868|gb|AAT89569.1| two-component system, regulatory protein [Leifsonia xyli subsp. xyli str. CTCB07] Length = 227 Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats. Identities = 56/226 (24%), Positives = 97/226 (42%), Gaps = 9/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D A + + L +G +E D+ ++ L G Sbjct: 4 ILLVEDEAALSEPLAYLLKREGYEVEVAEDGPTALADFDRLGADLVLLDLML--PGIPGT 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR S VP+I ++ S + + G DD V KP RE+LARV A+ RR Sbjct: 62 EVCREIRTRSSVPIIMLTAKDSEVDIVVGLELGADDYVTKPYSSRELLARVRAVLRRRVD 121 Query: 122 SNNRAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 R + G +R+ D V G +P +E +LE L+ N G+ + + Q+ Sbjct: 122 EAEREDDGVLETGAVRMDVDRHTVAVNGAEISMPLKEFELLELLLRNAGRVLTRGQLIDR 181 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 ++G D + ++ HI ++R ++ + + R LGY + Sbjct: 182 VWG-SDYFGDTKTLDVHIKRIRSRIEESPSDPQMLVTVRGLGYRFN 226 >gi|54307916|ref|YP_128936.1| putative DNA-binding response regulator PhoB [Photobacterium profundum SS9] gi|46912342|emb|CAG19134.1| putative DNA-binding response regulator PhoB [Photobacterium profundum SS9] Length = 229 Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats. Identities = 38/222 (17%), Positives = 92/222 (41%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D A +++ + G + ++ ++ L G G + Sbjct: 5 ILVVEDEAPIREMLCFVLEQKGYQPIEAEDYDDALEKICEPYPELILMDWMLPGGSGINL 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ + Q+P++ ++ + + + G DD + KP +E++AR+ A+ RR+ Sbjct: 65 IKHLKRDELTRQIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELMARLKAVMRRVS 124 Query: 121 VSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++ ++ E + E ++L + M ++ + ++ Q+ + ++ Sbjct: 125 PTSLDDVIDVQGLKLDPVSHRVTTNDEPLDMGPTEFKMLHFFMTHQERVYSREQLLNNVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G + VE+ V+ HI +LRK L V + R GY Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALEAGGHDKMVQTVRGAGYRF 225 >gi|254776645|ref|ZP_05218161.1| DNA-binding response regulator MtrA [Mycobacterium avium subsp. avium ATCC 25291] gi|45645201|sp|Q93CB8|MTRA_MYCPA RecName: Full=DNA-binding response regulator mtrA gi|61228246|sp|P0A5Z4|MTRA_MYCTU RecName: Full=DNA-binding response regulator mtrA gi|61228247|sp|P0A5Z5|MTRA_MYCBO RecName: Full=DNA-binding response regulator mtrA gi|509815|gb|AAB07804.1| MtrA [Mycobacterium tuberculosis H37Rv] Length = 225 Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats. Identities = 43/220 (19%), Positives = 85/220 (38%), Gaps = 5/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A + + + +G R D+ ++ L G + Sbjct: 5 ILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDLML--PGMNGI 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R++RA S VP++ ++ + +SG DD + KP +E++ARV A RR Sbjct: 63 DVCRVLRADSGVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRRNDD 122 Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + GE L E +L L + + + ++G Sbjct: 123 EPAEMLSIADVEIDVPAHKVTRNGEQISLTPLEFDLLVALARKPRQVFTRDVLLEQVWG- 181 Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219 + + +V H+ +LR K+ + V + R +GY Sbjct: 182 YRHPADTRLVNVHVQRLRAKVEKDPENPTVVLTVRGVGYK 221 >gi|302874199|ref|YP_003842832.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] gi|307689539|ref|ZP_07631985.1| two component transcriptional regulator, winged helix family protein [Clostridium cellulovorans 743B] gi|302577056|gb|ADL51068.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] Length = 229 Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats. Identities = 46/223 (20%), Positives = 93/223 (41%), Gaps = 8/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + +G +E + + D+ ++ L + Sbjct: 5 ILVIEDEVKIARFIELELNYEGYEVEKVHDGRDGFKMAKENDYDLILLDIML--PSMNGI 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAIY 116 E+ R +R S +P+I ++ + D G DD V KP R +A I Sbjct: 63 EILRRLRESSDIPVIMLTAKDETMDKVMGLDMGADDYVTKPFEIEELLARIRVALKRKIV 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + ++N + + + + + E L ++E +L YL+ N+ K +++ +I Sbjct: 123 VVKENTSNLIKIKNLSIDLEKYSVTFKSEDIELTKKEFDLLLYLVENKNKVLSRDKILET 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 ++G FD + NVV+ +I LR K+ +K + + R +GY Sbjct: 183 VWG-FDYFGDTNVVDVYIRYLRSKIDDKYKEKYIYTVRGVGYV 224 >gi|228914504|ref|ZP_04078113.1| Two-component response regulator vanR [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228844823|gb|EEM89865.1| Two-component response regulator vanR [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 242 Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats. Identities = 40/229 (17%), Positives = 84/229 (36%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +G + + E + ++ ++ ++ + Sbjct: 16 ILIVDDDQDIVRFMNVNLMQEGFKVFSAYNGEEALEIINNNSIQLAILDIM--MPQMDGI 73 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARVA 113 EL R IR +P+I +S S + F +G DD + KP E Sbjct: 74 ELCRRIREKHSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 133 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 ++V + + + R + GE L + E IL + A + + +I Sbjct: 134 FNQHAVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYDILFLMAAAKNRVFTIEEI 193 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 + +++ N V HI++LR K+ + + + +GY I+ Sbjct: 194 YESVWKERAYE-SNNTVMVHIARLRNKIEADPKEPKFIQNVWGVGYKIE 241 >gi|330897348|gb|EGH28767.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. japonica str. M301072PT] Length = 227 Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats. Identities = 44/221 (19%), Positives = 83/221 (37%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + G S ++ + + ++ L G + Sbjct: 10 ILIVEDEPKLASLMRDYLIAAGYSTHCLSNGLDVVPAVRANAPQLILLDIML--PGRDGM 67 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + +R+ S VP++ I+ L D G DD + KP RE + R Sbjct: 68 DICKELRSFSDVPIVMITARVEEIDRLLGLDLGADDYICKPFSPRE-MVARVKAILRRSS 126 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 S+ ++V G L E R+L + G+ ++ + +Y Sbjct: 127 SSETHTPKGLQVDEAHYQASFNGVTLDLTPVELRLLATFARSPGRVFSRDHLLDRLYSDH 186 Query: 182 DEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221 V + V+SHI LR+KL G DP+ S +GY ++ Sbjct: 187 -RVVTDRTVDSHIRNLRRKLEQACPGQDPIQSLYGVGYKLE 226 >gi|313677457|ref|YP_004055453.1| two component transcriptional regulator, winged helix family [Marivirga tractuosa DSM 4126] gi|312944155|gb|ADR23345.1| two component transcriptional regulator, winged helix family [Marivirga tractuosa DSM 4126] Length = 229 Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats. Identities = 41/223 (18%), Positives = 89/223 (39%), Gaps = 9/223 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVL 61 +++DD + + + +G +E + + + ++ + G + Sbjct: 10 LVVDDESDILELLEYNLTKEGYEVETAQDGKTAVEKAQKFQPQLILLDIMMPNQDGVETC 69 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 R + +I ++ + + F++G DD + KPI R +++R+ A +RR Sbjct: 70 RQLRETPESANSFIIFLTARSEEYSEVAAFENGADDYITKPIKPRALMSRINAYFRRDVK 129 Query: 122 SNNRAETGPI---RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 I + V G+ LP++E +L +L N K + + I+ Sbjct: 130 KQKDNNKITIGGLTIDRTSYTVSVDGKQVSLPKKEFELLYFLAQNPNKVFNRDDLLQNIW 189 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 G D V V+ H+ K+R+K+ + + + + +GY D Sbjct: 190 G-SDVYVLARTVDVHVRKVREKVGD----GYISTVKGVGYKFD 227 >gi|254818466|ref|ZP_05223467.1| DNA-binding response regulator PhoP [Mycobacterium intracellulare ATCC 13950] Length = 239 Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats. Identities = 51/224 (22%), Positives = 93/224 (41%), Gaps = 10/224 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD A + + G + + AR D ++ G Sbjct: 16 LVVDDEANIVELLSVSLKFQGFEVCTATNGAQALDRAREARPDAVILDVM--MPGMDGFG 73 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118 + R +RA P + ++ SLQ + G DD V KP E++AR+ I RR Sbjct: 74 VLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAGK 133 Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + R I + + + G+ L E +L Y + N G ++K +I Sbjct: 134 GGAEPRSARLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDH 193 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +D + NVVES++S LR+K+ + + + R +GY + Sbjct: 194 VW-RYDFGGDVNVVESYVSYLRRKI-DTGEKRLLHTLRGVGYVL 235 >gi|239624688|ref|ZP_04667719.1| two component transcriptional regulator [Clostridiales bacterium 1_7_47_FAA] gi|239521074|gb|EEQ60940.1| two component transcriptional regulator [Clostridiales bacterium 1_7_47FAA] Length = 234 Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats. Identities = 45/232 (19%), Positives = 84/232 (36%), Gaps = 14/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D DG + + + + + ++ G L Sbjct: 6 ILVVDDEKEIADLIEIYLVSDGYKVFKAENAARGLEILAKEDIHLVLLDIM--MPGMNGL 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH----------HREILAR 111 E+ + IR ++ +P+I +S + + +G DD V KP + H + Sbjct: 64 EMCKKIRENNNIPIIMLSAKSTDLDKILGLGTGADDYVVKPFNPLELTARVKSHLRRYTQ 123 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + +NN + + D V E L E IL L +N GK + Sbjct: 124 LNPNSASQDKANNEITIKGMIINKDNHKVIVDDEEIKLTPIEFDILYLLASNPGKVFSTD 183 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 +IF ++ N V HI +LR K++ + + +GY I+ Sbjct: 184 EIFERVWNEKVYEAN-NTVMVHIRRLRGKMKEDTRQNKIITTVWGVGYKIEK 234 >gi|126662999|ref|ZP_01733997.1| two-component response regulator [Flavobacteria bacterium BAL38] gi|126624657|gb|EAZ95347.1| two-component response regulator [Flavobacteria bacterium BAL38] Length = 229 Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats. Identities = 40/227 (17%), Positives = 89/227 (39%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 +L+DD + + +G + ++ + + + ++ + G + Sbjct: 8 ILLVDDEQDILEIVGYNLSQEGYQIVTASNGKEAVAMAKKELPQLIIMDVMMPEMDGMEA 67 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-----AI 115 E+ R + ++ + + FD+G DD + KPI + ++++V Sbjct: 68 CEIIRKTPELQDTVITFLTARSEDYSQVAGFDAGADDYIAKPIKPKVLVSKVQALLRRFK 127 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 S+ G I + + +G LPR+E + L GK + +I Sbjct: 128 DSEGSSSSTTLNVGNIEINREEYKIVKEGVEIILPRKEFELFYLLATKPGKVFTREEILD 187 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 ++G + V ++ HI KLR+K+ + D + + +GY I++ Sbjct: 188 KVWGN-EVVVGGRTIDVHIRKLREKIGD----DFFKTIKGVGYKIEF 229 >gi|291535098|emb|CBL08210.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Roseburia intestinalis M50/1] Length = 232 Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats. Identities = 48/223 (21%), Positives = 100/223 (44%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + ++ + + E + + +++ I ++ Sbjct: 6 ILVVDDESRMRKLVRDFLVREDYEVLEAGDGETALDIFYQEK-NIALIILDVMMPKMNGW 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR S+VP+I ++ + L F+ GVD+ ++KP + ++ARV AI RR+ Sbjct: 65 EVCREIRETSKVPIIMLTAKGDEEDELTGFELGVDEYISKPFSPKILVARVGAILRRIGK 124 Query: 122 SNNRAE---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + G I + V G L +E +L Y M N G +++ +I + ++ Sbjct: 125 APEEGKLLSIGGIVIDQTAHTVTVDGRQIELSFKEFELLTYFMENEGIALSREKILNHVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +D + +++H+ KLR K+ K D + + +GY + Sbjct: 185 -NYDYFGDARTIDTHVKKLRAKIGEKG--DYIKTIWGMGYKFE 224 >gi|46199299|ref|YP_004966.1| two-component response regulator [Thermus thermophilus HB27] gi|46196924|gb|AAS81339.1| two-component response regulator [Thermus thermophilus HB27] Length = 227 Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats. Identities = 44/217 (20%), Positives = 87/217 (40%), Gaps = 4/217 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D V A + G ++ + + D+ ++ L Sbjct: 4 ILLIEDDPEVARLVEAELKEAGFQVDWAKTGMEGLIRHREGKPDLVVLDLGL--PDLDGA 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IRA P++ ++ ++ + G DD + KP H E+ + R K Sbjct: 62 EVARRIRATDDTPILVLTAQDAVDRKVSLLTGGADDYLVKPFHPAEL-LARIQVQLRHKE 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + G + ++ R + L +E +L LM+ G+ + +I ++G Sbjct: 121 GSEVLAVGQLELYPRKRQVFFREREVRLSPKEFDLLHLLMSRPGRVFPRPEIEERVWGRP 180 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + NV++ H++ LR KLR + + + R +GY Sbjct: 181 -LGKDSNVLDVHMANLRAKLREAGAYGYLRTVRGVGY 216 >gi|37527767|ref|NP_931112.1| phosphate regulon transcriptional regulatory protein [Photorhabdus luminescens subsp. laumondii TTO1] gi|36787203|emb|CAE16283.1| phosphate regulon transcriptional regulatory protein [Photorhabdus luminescens subsp. laumondii TTO1] Length = 229 Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats. Identities = 40/222 (18%), Positives = 92/222 (41%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D A +++ + +G + S D+ ++ L G G ++ Sbjct: 5 ILVVEDEAPIREMVCFVLEKNGYQPVEAEDYDSALACLSEPYPDLVLLDWMLPGGSGLQI 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ + +P++ ++ + + + G DD + KP +E++ARV A+ RR+ Sbjct: 65 IKQMKRNNNIRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARVKAVLRRIS 124 Query: 121 VSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + S + + + E ++L + M + + ++ Q+ + ++ Sbjct: 125 PMVMEDIIEMDGLVLDSTSHRVTSRDKALDMGPTEFKLLHFFMTHPERVYSREQLLNYVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G + VE+ V+ HI +LRK L V + R GY Sbjct: 185 GA-NVYVEDRTVDVHIRRLRKVLEIGGHDKMVQTVRGTGYRF 225 >gi|312867423|ref|ZP_07727632.1| putative sensory transduction protein RegX3 [Streptococcus parasanguinis F0405] gi|311097124|gb|EFQ55359.1| putative sensory transduction protein RegX3 [Streptococcus parasanguinis F0405] Length = 217 Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats. Identities = 45/220 (20%), Positives = 90/220 (40%), Gaps = 7/220 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D L+++G + G + + L D+ ++ L L Sbjct: 3 ILIVEDEVLIREGMSDYLMECGYEIFEAGDGQEALDLFHKEAPDLVLLDIQLPI--LNGL 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IR S VP + ++ + L F D + +L + Sbjct: 61 EVLKTIRKTSSVPGLMLTAFHDEDYKLTAFGELADGY-LEKPFSLSLLKVRIEAIFKKLQ 119 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + G RV + + G+ + +E ILEYL+ + GK ++QI A++ Sbjct: 120 PSRVFTYGEARVDFESYTASLAGQAISMNAKELEILEYLLQHEGKARTRSQILDAVWKET 179 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +E + V++ +I +LRKKL D + + R +GY ++ Sbjct: 180 EEIPFDRVIDVYIKELRKKLEL----DCIVTVRNVGYKLE 215 >gi|326790774|ref|YP_004308595.1| transcriptional regulator [Clostridium lentocellum DSM 5427] gi|326541538|gb|ADZ83397.1| two component transcriptional regulator, winged helix family [Clostridium lentocellum DSM 5427] Length = 225 Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats. Identities = 46/226 (20%), Positives = 95/226 (42%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++++ +G + + D+ ++ Sbjct: 4 LLVVDDEKMIRELIKKYATFEGHEVTEAEDGMEAIEKCKMNQFDLIIMDVM--MPELDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 R IR + P++ +S + F+ GVDD V KP +E++ RV AI +R KV Sbjct: 62 SACREIRKFTDTPVLMLSARGEEYDRIHGFEIGVDDYVVKPFSPKELMMRVNAIIKRGKV 121 Query: 122 S-----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + ++V D R + G+ + +E + Y++ NRG +++ + S Sbjct: 122 KEEAASKDVVCFQGLKVDFDARLVSIDGKNVEMTPKEYELFFYMVRNRGIALSRENLISN 181 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 ++G +D ++ +++HI LRK L + + R +GY + Sbjct: 182 VWG-YDYYGDDRTLDTHIKLLRKSLGEY--ARLIVTLRGVGYRFEE 224 >gi|315504995|ref|YP_004083882.1| two component transcriptional regulator, winged helix family [Micromonospora sp. L5] gi|315411614|gb|ADU09731.1| two component transcriptional regulator, winged helix family [Micromonospora sp. L5] Length = 230 Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats. Identities = 53/225 (23%), Positives = 94/225 (41%), Gaps = 10/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + DG + R DV ++ L G +E Sbjct: 6 LVVDDERSLAKVVASYLERDGHEVSCVFDGRSAVAAARRDRPDVVVLDLAL--PGLDGIE 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR + ++ ++ L G DD + KP RE++AR+ A+ RR + + Sbjct: 64 VCRQIRTFTDCYVVMLTARSEEVDKLIGLGVGADDYLTKPFSPRELVARIRAMLRRPRAA 123 Query: 123 NNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 A R GR+ V + L R E +L L A + + Q+ A Sbjct: 124 VAPAAEQSTRTVGGLRVDLAGREVYVDEQPVELTRTEFDLLAALSAQPDTALRRRQLIDA 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 ++G D +E++V+ HI+ LR+KL + G + + R +GY + Sbjct: 184 VWGA-DWVGDEHLVDVHIAHLRRKLGDDPAGPRFIRTVRGIGYRM 227 >gi|282865224|ref|ZP_06274277.1| two component transcriptional regulator, winged helix family [Streptomyces sp. ACTE] gi|282560147|gb|EFB65696.1| two component transcriptional regulator, winged helix family [Streptomyces sp. ACTE] Length = 225 Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats. Identities = 44/219 (20%), Positives = 90/219 (41%), Gaps = 5/219 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + + +G + A+ D+ ++ L G +E Sbjct: 6 LVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFRDAKPDLVLLDLML--PGRDGIE 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R+IRA S VP++ ++ + +SG DD + KP +E++AR+ A RR + Sbjct: 64 VCRLIRAESGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEEP 123 Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + G + +G+ L E +L L + + + ++G + Sbjct: 124 APEQLAIGDLVIDVAGHSVKREGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWG-Y 182 Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219 A + +V H+ +LR K+ + V + R +GY Sbjct: 183 RHAADTRLVNVHVQRLRSKVEKDPERPEIVVTVRGVGYK 221 >gi|148378368|ref|YP_001252909.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 3502] gi|153939020|ref|YP_001389733.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|168177708|ref|ZP_02612372.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|168181227|ref|ZP_02615891.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|170754669|ref|YP_001780018.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] gi|170758790|ref|YP_001785702.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] gi|226947596|ref|YP_002802687.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] gi|148287852|emb|CAL81918.1| two-component response regulator [Clostridium botulinum A str. ATCC 3502] gi|152934916|gb|ABS40414.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|169119881|gb|ACA43717.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] gi|169405779|gb|ACA54190.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] gi|182670720|gb|EDT82694.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|182675277|gb|EDT87238.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|226842593|gb|ACO85259.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] Length = 232 Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats. Identities = 38/230 (16%), Positives = 82/230 (35%), Gaps = 12/230 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++D ++G ++ L + + ++ + Sbjct: 6 ILIVDDEKEIRDLIDIYLTNEGYITLKASNGIEALELLKTNNVHLIILDIM--MPKMDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH--------REILARVA 113 E IR +P+I +S + +G DD + KP + ++ + Sbjct: 64 EACMKIREEKSMPIIMLSAKSEDMDKIIGLTTGADDYITKPFNPLELLARVKSQLRRYIK 123 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + I + + ++ + L RE ILE L NRG + +I Sbjct: 124 LNNSNGNENEDIVTIEDITINVATHEVKIGDQPVRLTPREFDILELLARNRGVVFSIEKI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 + ++ + N V HI KLR+K+ + + +GY ++ Sbjct: 184 YELVW-KEEFLDSNNTVMVHIRKLREKIEQNPRNPRYIKTVWGVGYKVEK 232 >gi|148378266|ref|YP_001252807.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 3502] gi|153932068|ref|YP_001382668.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|153935185|ref|YP_001386219.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|148287750|emb|CAL81816.1| two-component response regulator [Clostridium botulinum A str. ATCC 3502] gi|152928112|gb|ABS33612.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|152931099|gb|ABS36598.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] Length = 225 Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats. Identities = 43/224 (19%), Positives = 90/224 (40%), Gaps = 6/224 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD + + ++G ++ S QS D+ ++ L Sbjct: 5 ILVIDDEVKIIEVIKLYLENEGYTVIQATSGIEALEKQSEFNPDLLILDLML--PDISGE 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119 + IR S+VP+I ++ S + L+ + G DD + KP ++++A+V A + Sbjct: 63 NVCERIRRESEVPIIMLTAKSSEDSILNGYSIGSDDYITKPFSPKQLVAKVNAVLKRVKG 122 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 N + + + E + L E +IL L N K ++ ++ I Sbjct: 123 NQRENLIFNNELIIDIVNKKVEYNNKEIILTASEYKILSILAKNPNKIFSREELMDYI-S 181 Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 + + + ++++HI +R KL + + R +GY + Sbjct: 182 RDNTCIYDRIIDTHIKNIRAKLDQDSKNPTYIKTIRGMGYRFNV 225 >gi|217388361|ref|YP_002333390.1| regulatory protein VanR [Enterococcus faecalis] gi|227517498|ref|ZP_03947547.1| response regulator [Enterococcus faecalis TX0104] gi|260559887|ref|ZP_05832066.1| regulatory protein vanRB [Enterococcus faecium C68] gi|11345398|gb|AAG34686.1|AF310956_1 response regulator [Enterococcus faecium] gi|55709826|gb|AAV58811.1| vanRB [Clostridium sp. CCRI-9842] gi|61743147|gb|AAX55325.1| VanRB [Clostridium hathewayi] gi|61743150|gb|AAX55327.1| VanRB [Clostridium hathewayi] gi|61743153|gb|AAX55329.1| VanRB [Clostridium hathewayi] gi|80973253|gb|ABB53358.1| VanRB [Clostridium sp. MLG245] gi|80973264|gb|ABB53368.1| VanRB [Enterococcus faecium] gi|216409903|dbj|BAH02338.1| vanR [Enterococcus faecalis] gi|227075103|gb|EEI13066.1| response regulator [Enterococcus faecalis TX0104] gi|229463102|gb|ACQ66100.1| response regulator [Enterococcus faecium] gi|260074111|gb|EEW62434.1| regulatory protein vanRB [Enterococcus faecium C68] Length = 219 Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats. Identities = 51/221 (23%), Positives = 92/221 (41%), Gaps = 7/221 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + + A + G ++ + ++ L G Sbjct: 5 ILLVEDDDHICNTVRAFLAEAGYQVDACTDGNEAYTKFYENTYQLVILDIML--PGMNGH 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL R RA + P++ ++ + + FD+ DD V KP + +L RV A+ RR Sbjct: 63 ELLREFRAKNDTPILMMTALSDDENQIRAFDAEADDYVTKPFKMQILLKRVEALLRRSGA 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 G + + + G PL R+E IL L+ N+G+ + I S I+G + Sbjct: 123 LAKEIRVGRLTLLPEDFTVLCDGTELPLTRKEFEILLLLVQNKGRTLTHEIILSRIWG-Y 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 D + + V +HI LR KL + + + R +GY ++ Sbjct: 182 DFEGDGSTVHTHIKNLRAKLPE----NIIKTIRGVGYRLEE 218 >gi|89897063|ref|YP_520550.1| hypothetical protein DSY4317 [Desulfitobacterium hafniense Y51] gi|219667066|ref|YP_002457501.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|89336511|dbj|BAE86106.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219537326|gb|ACL19065.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 227 Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats. Identities = 50/221 (22%), Positives = 99/221 (44%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD + + ++G ++ L + ++ G Sbjct: 9 ILIIDDEPNILEFLEMGLLNEGFEVQTAADGMTGVTLAKQLHPHLVILDIM--MPGMDGF 66 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-AIYRRLK 120 E+ R+++ V +I ++ ++ + G DD + KP E+LAR+ I + Sbjct: 67 EVCRMLKKSENVSIIMLTAKDEVEDRVKGLTIGADDYMAKPFSFEELLARIHARIRNQFP 126 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 GP R+ ++ + Q +V L E +L++L+ N+G ++KT I ++G Sbjct: 127 TLLGEVVMGPFRLDDRRKEIQFQDKVLELSPTEYELLKFLILNQGLVLSKTMILDKVWG- 185 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +D A ++N+VE +I LR+KL +K + + R GY +D Sbjct: 186 YDFAGDDNIVEVYIRSLREKLGDK-EHRLIRTLRGSGYRMD 225 >gi|257865841|ref|ZP_05645494.1| vancomycin response regulator [Enterococcus casseliflavus EC30] gi|257872176|ref|ZP_05651829.1| vancomycin response regulator [Enterococcus casseliflavus EC10] gi|257799775|gb|EEV28827.1| vancomycin response regulator [Enterococcus casseliflavus EC30] gi|257806340|gb|EEV35162.1| vancomycin response regulator [Enterococcus casseliflavus EC10] Length = 225 Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats. Identities = 46/224 (20%), Positives = 86/224 (38%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + D ++ S+ + ++ ++ L Sbjct: 4 ILLVEDEKEISDLIAFYLRNENFSVITCADGHEAQVQIEQNSFSLAILDVML--PDITGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 +L +IIR P+I ++ + G DD + KP E++ARV A RR Sbjct: 62 DLCKIIRKKHHYPIIMLTAKSEEIDKITGLTIGADDYITKPFRPLEVIARVKAQIRRSTQ 121 Query: 122 SNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 N + I + R +Q E L E IL+ LM +G+ V+ ++F + Sbjct: 122 YNGSDQNKLIVRELELDVNKRKCFLQEEELSLTPIEFSILKLLMERKGQVVSSEEMFQEV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 +G N + H+ LR+K+ + + + +GY I Sbjct: 182 WGEKYYTSSNNTIMVHVRNLREKMHDTHKKSSYIKTVWGIGYKI 225 >gi|225569868|ref|ZP_03778893.1| hypothetical protein CLOHYLEM_05962 [Clostridium hylemonae DSM 15053] gi|225161338|gb|EEG73957.1| hypothetical protein CLOHYLEM_05962 [Clostridium hylemonae DSM 15053] Length = 229 Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats. Identities = 46/227 (20%), Positives = 87/227 (38%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + D G +E N E D+ ++ L G Sbjct: 4 ILIVEDEEAIADLEKDYLELSGFHVEVANDGELGLKKALEEDYDLFILDLML--PGVDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R +R P+I +S + G DD + KP E++ARV A R Sbjct: 62 DICRQVRNVKNTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARYDR 121 Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 NN E +++ + R V GE +E +L +L ++ K ++F Sbjct: 122 LTGSAAEVNNIIEIRGLKIDTTARRVWVNGEERTFTTKEFDLLTFLASHPNHVYTKEELF 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 I+ + + + V HI K+R+K+ + +++ +GY Sbjct: 182 REIWDM-ESIGDIATVTVHIKKIREKVEMDTSNPQYIETIWGVGYRF 227 >gi|254421256|ref|ZP_05034974.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] gi|196188745|gb|EDX83709.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] Length = 227 Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats. Identities = 46/221 (20%), Positives = 97/221 (43%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + G +G + N + D+ ++ G + Sbjct: 8 ILIVEDEEKLAKFVQLELGYEGYEVIVANDGLSGLMAARDSEPDLVLLDWM--MPGLTGV 65 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +RA +P+I ++ ++ + D+G DD V KP E+LARV A RR + Sbjct: 66 EVCRRLRATGAMMPVILLTAKDGIEDRVAGLDAGADDYVVKPFSIEELLARVRAHLRRNQ 125 Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + + R+ + L +E +L+YL+++ + + + +I ++G Sbjct: 126 PEDPESFLFADLSLNRKTREVRRGDRLIELTAKEFDLLDYLISHPKQVLTRDRILEEVWG 185 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D + N++E +I LR KL + + + R +GY + Sbjct: 186 -YDFMGDSNIIEVYIRYLRLKLEAENESRLIQTVRGVGYVM 225 >gi|206974598|ref|ZP_03235514.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|206747241|gb|EDZ58632.1| DNA-binding response regulator [Bacillus cereus H3081.97] Length = 225 Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats. Identities = 42/221 (19%), Positives = 93/221 (42%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L DD +++ +G + + + + ++ ++ Sbjct: 6 ILLADDDKHIRELLHYHLQKEGFKVFEAEDGKVAQEVLEKENIHLAIVDIM--MPFVDGY 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L IR + +P+I ++ L F SG DD + KP E++ R+ A+ RR ++ Sbjct: 64 TLCEEIRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQM 123 Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + T + G + + G+ LP +E +L L + G+ ++ ++ ++G+ Sbjct: 124 LSADMITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM 183 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D +E V+ H+ +LR + + + + R LGY ++ Sbjct: 184 -DFEGDERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 223 >gi|157693741|ref|YP_001488203.1| response regulator [Bacillus pumilus SAFR-032] gi|157682499|gb|ABV63643.1| response regulator [Bacillus pumilus SAFR-032] Length = 240 Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats. Identities = 43/228 (18%), Positives = 90/228 (39%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD + + +G + + +E L ED+ + ++ G+ Sbjct: 6 ILIADDEEAIVKMVERVLKKEGFK-HIYKAYHADEALDVVKNEDIHLLLLDVMMPGKSGF 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ +R ++ P+ ++ S L F G DD + KP + E++AR+ A R + Sbjct: 65 DVLPEMRKFTKAPIFYLTARTSDVDKLTGFAQGADDYITKPFNPLELVARIKAHLNRTYI 124 Query: 122 SNNRAETGPIRVFSDGRDPEVQG--------EVFPLPRRERRILEYLMANRGKRVAKTQI 173 S + + EV + +L+Y + ++K QI Sbjct: 125 SLKEDQDEAQSPYEYAHFSYHPHSAELKVRGEVTACSAQLLSLLKYFCDHPNVVLSKDQI 184 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + ++G+ + N V HI KLR+K+ + + + + R +GY Sbjct: 185 YEKVWGVPSY-GDNNTVMVHIRKLREKIELDPSQPEYIVTIRGMGYKF 231 >gi|148653890|ref|YP_001280983.1| two component transcriptional regulator [Psychrobacter sp. PRwf-1] gi|148572974|gb|ABQ95033.1| two component transcriptional regulator, winged helix family [Psychrobacter sp. PRwf-1] Length = 233 Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats. Identities = 40/223 (17%), Positives = 88/223 (39%), Gaps = 5/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG--KGEK 59 ++++D +++ + G + R + ++ L G G Sbjct: 6 ILVVEDEPAIREMIVTTLEMAGFECLQAEDVSEAHSQVVDHRPAMILLDWMLPGNQSGID 65 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 + + S++P+I ++ + D+G DD + KP RE+++R+ A+ RR Sbjct: 66 LCRRLKKDELLSEIPIIMLTARGEEDNKVQGLDAGADDYITKPFSTRELVSRIKAVLRRS 125 Query: 120 KVSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + + G + E R+L + M++ + +TQ+ + Sbjct: 126 SALSGDKPIEAEGLSLDPVSQRLSADGTPLEIGPTEYRLLAFFMSHPERAYTRTQLLDQV 185 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G + VE+ ++ HI +LRK L + + + R GY Sbjct: 186 WG-GNVYVEDRTIDVHIRRLRKVLEPYNYAEFIQTVRGTGYRF 227 >gi|320008511|gb|ADW03361.1| two component transcriptional regulator, winged helix family [Streptomyces flavogriseus ATCC 33331] Length = 219 Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats. Identities = 47/222 (21%), Positives = 92/222 (41%), Gaps = 9/222 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G +++ + L D+ ++ L G Sbjct: 3 LLIVEDEKRLATSLARGLTAEGFAVDVVHDGLEGLHLAGQGVYDLVVLDIML--PGMNGY 60 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + +RA P++ ++ + D+G DD + KP + ++ARV A+ RR Sbjct: 61 RICAALRAAGHETPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARVRALLRRRG 120 Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S + T R+ + R + L +E +LE L+ G+ V+K I ++ Sbjct: 121 GSASPVLTAGTLRMDTAARRVHRGEDEVTLTTKEFAVLEQLVRRAGEVVSKADILEHVWD 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 F + N+VE +IS LR+KL + + R GY ++ Sbjct: 181 -FAYDGDPNIVEVYISTLRRKLGAAA----IRTVRGAGYRLE 217 >gi|152971070|ref|YP_001336179.1| DNA-binding transcriptional regulator BaeR [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150955919|gb|ABR77949.1| response regulator in two-component regulatory system with BaeS (OmpR family) [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 240 Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats. Identities = 50/224 (22%), Positives = 89/224 (39%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + I G + N + + ++ L G L Sbjct: 13 ILIVEDEPKLGQLLIDYLQAAGYAPALINHGDKVLPYVRQTPPHLILLDLML--PGTDGL 70 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R IR S VP++ ++ L + G DD + KP RE++ARV I RR K Sbjct: 71 TLCREIRRFSDVPVVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 Query: 122 SNNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + P+ V + ++ L E R+L+ L GK ++ Q+ + +Y Sbjct: 131 QRDLQALDARSPLIVDESRFQASWRDKLLDLTPAEFRLLKTLSQEPGKVFSREQLLNHLY 190 Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + V + ++SHI LR+KL + + +GY + Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLEALDAEQSFIRAVYGVGYRWE 233 >gi|197116643|ref|YP_002137070.1| winged-helix transcriptional response regulator [Geobacter bemidjiensis Bem] gi|197086003|gb|ACH37274.1| winged-helix transcriptional response regulator [Geobacter bemidjiensis Bem] Length = 224 Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats. Identities = 42/221 (19%), Positives = 90/221 (40%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D V ++ + E L D+ ++ L + L Sbjct: 3 ILVVEDEKKVASFIKRGLEEEQYEVHTAADGEEGLKLALEKPFDLIVLDWML--PKKDGL 60 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119 + + +R P++ ++ S++ + DSG DD + KP E+LARV A + R Sbjct: 61 SVLKELRERKNLTPILMLTAKDSVEDIVAGLDSGSDDYLTKPFAFAELLARVRALMRRSE 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +R+ + + L +E +LEY M N + + +T I ++ Sbjct: 121 LDRGAEIRFADLRLDLVTHKVWRKDKEIDLTAKEYGLLEYFMRNPHQVLTRTMIAEHVWD 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + N+++ +++ LRKK+ + + + R +GY + Sbjct: 181 -YTFDSFTNIIDVYVNYLRKKIDREADKKLIHTVRGVGYIL 220 >gi|126650356|ref|ZP_01722584.1| two-component response regulator [Bacillus sp. B14905] gi|126593006|gb|EAZ86988.1| two-component response regulator [Bacillus sp. B14905] Length = 241 Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats. Identities = 47/228 (20%), Positives = 89/228 (39%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +++DD + + +++ ++ + L D+ ++ L Sbjct: 7 ILIVDDEVGILKLLEITLRKENFINIDAASTGKDTLQLVKENHYDIILLDIML--PDISG 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL IR H+ P+I +S + L G DD + KP + E++AR+ I RR K Sbjct: 65 FELCTEIRKHTNTPIIFVSARSTDFDKLTGLGIGGDDYITKPFNPLEVVARIKVILRRQK 124 Query: 121 VSNNRAETGPIRVFSDGRDPEV-------QGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + + + ++ +E +L + N + +Q+ Sbjct: 125 MYESSHQQQSSKFDFGYFALNPESATLIVNNQLVDCTAKELELLHFFCKNPNRIFTTSQL 184 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 + ++G D EE V HISKLRKKL + + + R +GY Sbjct: 185 YEFVWGN-DVYGEEKTVTIHISKLRKKLGDDTRKPKIIVNLRGIGYKF 231 >gi|225570802|ref|ZP_03779825.1| hypothetical protein CLOHYLEM_06905 [Clostridium hylemonae DSM 15053] gi|225160264|gb|EEG72883.1| hypothetical protein CLOHYLEM_06905 [Clostridium hylemonae DSM 15053] Length = 226 Score = 144 bits (364), Expect = 8e-33, Method: Composition-based stats. Identities = 37/223 (16%), Positives = 92/223 (41%), Gaps = 6/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + ++ G +G ++ + +E ++ + ++ Sbjct: 6 ILVVDDESRMRKLVRDFLGREGYTVLEAGDGMEAMEIFYEDKE-IALVILDVMMPKMDGW 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV--NKPIHHREILARVAAIYRRL 119 ++ R IR SQ P+I ++ + L F+ GVD+ + + Sbjct: 65 QVCREIRQSSQTPVIMLTARSEERDELQGFELGVDEYISKPFSPKILVARVEAILRRSHV 124 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + G I++ + + +G+ L +E +L Y + N G +++ +I + ++ Sbjct: 125 LGAEEIIDAGGIQINKAAHEVKAEGKQIDLSYKEFELLVYFVENEGIALSREKILNNVW- 183 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D + +++H+ KLR KL +K + + +GY + Sbjct: 184 NYDYFGDARTIDTHVKKLRNKLGDKGN--YIKTIWGMGYKFEV 224 >gi|258510266|ref|YP_003183700.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|50830978|emb|CAG29816.1| putative response regulator transcription factor kdpE [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257476992|gb|ACV57311.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 232 Score = 144 bits (364), Expect = 8e-33, Method: Composition-based stats. Identities = 52/222 (23%), Positives = 95/222 (42%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + G + +S E + S+ R D++ I+ L + + Sbjct: 6 ILVVDDERAILKLMQIALKGHGYEVLEASSGEEALVVASTKRPDLAVIDWGL--PDMEGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119 E+ R +R SQ+P+I ++ + + + D+G DD V KP E+ RVA + Sbjct: 64 EVLRRLREWSQMPVIMLTVRDAEEDKIAALDAGADDYVVKPFGMGELLARIRVALRHAAR 123 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 E + + R E+ GE L E +L+ L N GK V + Q+ ++G Sbjct: 124 VQDEPVIEAAGLAIHLAERRVELNGEAVKLTPIEYDLLKALAQNAGKVVTQRQLLRHVWG 183 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220 D + + +I LRKKL + + ++ +GY + Sbjct: 184 DVDPDNAAHYLRVYIGHLRKKLEDDPSRPWRIVTEPGVGYRL 225 >gi|310643897|ref|YP_003948655.1| two-component response regulator, potential cognate sensor kinase is yxdk [Paenibacillus polymyxa SC2] gi|309248847|gb|ADO58414.1| Two-component response regulator, potential cognate sensor kinase is YxdK [Paenibacillus polymyxa SC2] Length = 233 Score = 144 bits (364), Expect = 8e-33, Method: Composition-based stats. Identities = 37/225 (16%), Positives = 84/225 (37%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G ++ + + + D+ ++ L Sbjct: 4 ILIVEDDPQISSLLQSYLEKYGYQGVVVSNFDQVLGVFQKVKPDLVILDVNL--PRFDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115 R IR S P++ +S + +G DD + KP H + R A Sbjct: 62 YWCRQIRTQSTCPILFVSARDDKMDQVIALQNGADDYITKPFHPEVLLAKVESNLRRAYG 121 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + + ++ D + + + +E +LE LM + V + + Sbjct: 122 LYAVAQKSRTITVSGLTLYPDTMELVFHDKQVEMSHKEAALLELLMTYPKQVVGRVHLLE 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 A++ + V EN + +++++RKKL D +++ R GY + Sbjct: 182 ALWDDYQY-VGENTLNVYVTRVRKKLSELGLEDIIETVRGAGYRL 225 >gi|296138804|ref|YP_003646047.1| two component transcriptional regulator, winged helix family [Tsukamurella paurometabola DSM 20162] gi|296026938|gb|ADG77708.1| two component transcriptional regulator, winged helix family [Tsukamurella paurometabola DSM 20162] Length = 228 Score = 144 bits (364), Expect = 8e-33, Method: Composition-based stats. Identities = 47/220 (21%), Positives = 90/220 (40%), Gaps = 5/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD + + + ++G R D+ ++ L G + Sbjct: 8 ILVIDDDPALAEMLTIVLRNEGFDSMVVGDGTQALGAAREFRPDLVLLDLML--PGMNGI 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R++RA S VP++ ++ + +SG DD V KP +E++ARV A RR Sbjct: 66 DVARVLRADSNVPIVMLTAKADTVDVVLGLESGADDYVIKPFKPKELVARVRARLRRTAD 125 Query: 122 SNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + G + + GEV PL E +L + + + + ++G Sbjct: 126 EPSELLSIGNVIIDVPAHKVTRDGEVVPLTPTEFDLLVTMARKPRQVFTRDVLLEQVWG- 184 Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219 + + +V HI +LR K+ + + V + R +GY Sbjct: 185 YRHPADTRLVNVHIQRLRAKIEKDPENPEIVLTLRGVGYK 224 >gi|229196123|ref|ZP_04322874.1| Two-component response regulator vanR [Bacillus cereus m1293] gi|228587357|gb|EEK45424.1| Two-component response regulator vanR [Bacillus cereus m1293] Length = 242 Score = 144 bits (364), Expect = 8e-33, Method: Composition-based stats. Identities = 38/229 (16%), Positives = 85/229 (37%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +G + ++ E + ++ ++ ++ + Sbjct: 16 ILIVDDDQDIVRFMNVNLMQEGFKVFSAHNGEEALEIINNNSIQLAILDIM--MPQMDGI 73 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR--------EILARVA 113 EL R IR +P++ +S S + F +G DD + KP ++ Sbjct: 74 ELCRRIREKHSLPIMFLSAKSSDVDKVVGFSTGADDYIVKPFSTIELIARVKAQLRRYTY 133 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 ++V + + + R + GE L + E IL + A + + +I Sbjct: 134 FNQNAVQVIEKKINIRGLEIDEASRTVMLYGETINLTKTEYDILYLMAAAKNRVFTIEEI 193 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + +++ N V HI++LR K+ + + +GY I+ Sbjct: 194 YESVWKERAYE-SNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIE 241 >gi|291482776|dbj|BAI83851.1| hypothetical protein BSNT_00666 [Bacillus subtilis subsp. natto BEST195] Length = 289 Score = 144 bits (364), Expect = 8e-33, Method: Composition-based stats. Identities = 49/229 (21%), Positives = 90/229 (39%), Gaps = 11/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D V F +G E + + D+ ++ L + Sbjct: 65 ILMIEDNVSVCTMTEMFFFKEGFEAEFVHDGLEGYQRFTEENWDLIILDIML--PSMDGV 122 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 + R IR S VP+I ++ + + F+ G DD V KP ++AR+ A+ RR K Sbjct: 123 TICRKIRETSTVPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARIKAVIRRYKA 182 Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + V L +E +L YL+ N + ++ Q+ Sbjct: 183 TGKAVIDEDMIETECFTINKKTREVLLNGEPVENLTPKEFDLLYYLVQNPRQVFSREQLL 242 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 ++G + +E V+ HI +LRKKL ++ + + +GY D + Sbjct: 243 EQVWG-YQFYGDERTVDVHIKRLRKKLASEDKP-FLYTVWGVGYKFDED 289 >gi|257875469|ref|ZP_05655122.1| vancomycin response regulator [Enterococcus casseliflavus EC20] gi|257809635|gb|EEV38455.1| vancomycin response regulator [Enterococcus casseliflavus EC20] Length = 225 Score = 144 bits (364), Expect = 8e-33, Method: Composition-based stats. Identities = 46/224 (20%), Positives = 86/224 (38%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + D ++ S+ + ++ ++ L Sbjct: 4 ILLVEDEKEISDLIAFYLRNENFSVITCADANEAQVQIEQNSFSLAILDVML--PDITGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 +L +IIR P+I ++ + G DD + KP E++ARV A RR Sbjct: 62 DLCKIIRKKHHYPIIMLTAKSEEIDKITGLTIGADDYITKPFRPLEVIARVKAQIRRSTQ 121 Query: 122 SNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 N + I + R +Q E L E IL+ LM +G+ V+ ++F + Sbjct: 122 YNGSDQNKLIVRELELDVNKRKCFLQEEELSLTPIEFSILKLLMERKGQVVSSEEMFQEV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 +G N + H+ LR+K+ + + + +GY I Sbjct: 182 WGEKYYTSSNNTIMVHVRNLREKMHDTHKKSSYIKTVWGIGYKI 225 >gi|148984378|ref|ZP_01817666.1| response regulator [Streptococcus pneumoniae SP3-BS71] gi|147923155|gb|EDK74269.1| response regulator [Streptococcus pneumoniae SP3-BS71] gi|301800830|emb|CBW33486.1| alkaline phosphatase synthesis transcriptional regulatory protein [Streptococcus pneumoniae OXC141] Length = 235 Score = 144 bits (364), Expect = 8e-33, Method: Composition-based stats. Identities = 41/230 (17%), Positives = 87/230 (37%), Gaps = 15/230 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L+DD + +G S + + L + D ++ L +E Sbjct: 6 LLVDDEEHILRLLDYHLSKEGFSTQLVTNGRKALALAETEPFDFILLDIML--PQLDGIE 63 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILAR 111 + + +RA P++ +S + + G DD + KP R Sbjct: 64 VCKRLRAKGIKTPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELLARVKAVLRRTKG 123 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 ++++ G ++V+ + + ++ L +E +L YLM + + + Sbjct: 124 EQEGDDSDNIADDSWLFGTLKVYPERHEVYKANKLLSLTPKEFELLLYLMKHPNMTLTRE 183 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++ I+G +D E +V+ HI KLR+K+ + + + R GY Sbjct: 184 RLLERIWG-YDFGQETRLVDVHIGKLREKIEDNPKAPQFIRTIRGYGYKF 232 >gi|138895736|ref|YP_001126189.1| two-component response regulator [Geobacillus thermodenitrificans NG80-2] gi|196248616|ref|ZP_03147316.1| two component transcriptional regulator, winged helix family [Geobacillus sp. G11MC16] gi|134267249|gb|ABO67444.1| Two-component response regulator [Geobacillus thermodenitrificans NG80-2] gi|196211492|gb|EDY06251.1| two component transcriptional regulator, winged helix family [Geobacillus sp. G11MC16] Length = 224 Score = 144 bits (364), Expect = 8e-33, Method: Composition-based stats. Identities = 48/221 (21%), Positives = 83/221 (37%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D A + +G + L S D+ ++ L + Sbjct: 5 ILLVEDEAGLARFLELDLMHEGFDVHVCGDGREGLELALSEPWDLILLDVML--PSLNGM 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119 E+ R IRA P+I I+ S+ + D+G DD + KP E+ R Sbjct: 63 EVCRRIRAAKSTPIIMITARDSVFDRVMGLDNGADDYIVKPFAIEELLARIRALFRRVHP 122 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + V R + L +RE +L M N + + + ++G Sbjct: 123 ESGGQVLTFKDLVVDMQARTVKKGNAFIELTKREYDLLVAFMQNINVVLTRDLLLEKVWG 182 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 FD VE NVV+ ++ LR+KL + + R GY + Sbjct: 183 -FDTEVETNVVDVYVRYLRQKLDEHNKERYIQTVRGAGYVM 222 >gi|56476059|ref|YP_157648.1| two-component response regulatory protein [Aromatoleum aromaticum EbN1] gi|56312102|emb|CAI06747.1| Two-component response regulatory protein [Aromatoleum aromaticum EbN1] Length = 228 Score = 144 bits (364), Expect = 8e-33, Method: Composition-based stats. Identities = 55/221 (24%), Positives = 100/221 (45%), Gaps = 6/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 +L +D ++ +G G +++ S + ++ D+ ++ L G V Sbjct: 3 ILLAEDDQVIANGLGRALKRSGYAVDHVASGSEADTALATQTYDLLILDLGLPKLPGIDV 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L+ R S +P++ ++ ++ + D+G DD + KP E+ ARV A+ RR Sbjct: 63 LKRLRA--RKSALPVLILTAQDGVEERVRGLDAGADDYLTKPFALPELEARVRALTRRGT 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 E G + R ++ G+V L RE +LE G+ V+K QI + G Sbjct: 121 GQPRCIEIGSLSYDQADRVAKINGQVVELSAREVGLLEVFALRVGRLVSKDQIVDHLCG- 179 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + E V N +E ++ +LRKKL + + + R LGY ++ Sbjct: 180 WGEEVSSNAIEVYVHRLRKKLEDSG--VRIVTVRGLGYCLE 218 >gi|319651162|ref|ZP_08005294.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2] gi|317397144|gb|EFV77850.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2] Length = 224 Score = 144 bits (363), Expect = 8e-33, Method: Composition-based stats. Identities = 48/224 (21%), Positives = 87/224 (38%), Gaps = 9/224 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD A ++ G+ G + S + + D+ ++ GE Sbjct: 4 ILIIDDEADMRHLIEMYLGNSGFTCFSAESGFEAYGILENNVMDLVILDIM--MPGEDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH---REILARVAAIYRR 118 E+ IR S VP+I +S + G DD + KP + V Sbjct: 62 EVCSRIRGKSNVPIIFLSAKGEEWDKVKALQLGGDDYIVKPFSPGELIARMNAVLRRTGG 121 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 LK + + G I + R V G L +E +L + + ++ + +++ Q+ I+ Sbjct: 122 LKSDMDSIQIGKITIDKKARKVTVAGIQVTLTLKEYELLLFFIEHKNQALSREQLLEYIW 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 G+ D V++HI LR KL D + + +GY + Sbjct: 182 GI-DYTGSLRTVDTHIKTLRMKLGV---GDYIQTVWGVGYKFEV 221 >gi|229014012|ref|ZP_04171136.1| Two-component response regulator [Bacillus mycoides DSM 2048] gi|229135662|ref|ZP_04264439.1| Two-component response regulator [Bacillus cereus BDRD-ST196] gi|228647760|gb|EEL03818.1| Two-component response regulator [Bacillus cereus BDRD-ST196] gi|228747268|gb|EEL97147.1| Two-component response regulator [Bacillus mycoides DSM 2048] Length = 229 Score = 144 bits (363), Expect = 8e-33, Method: Composition-based stats. Identities = 53/229 (23%), Positives = 89/229 (38%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++++ F + + + L D+ ++ L Sbjct: 5 ILIVEDEDILREILKDYFLSEQYKVLEARDGKEALVLFEEEEVDLVILDIML--PELDGW 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR-------EILARVAA 114 + R IR S VP+I ++ TL F+ G DD V KP +L A Sbjct: 63 SVCRRIRKTSGVPIIMLTARVDEDDTLLGFELGADDYVAKPYSPPILLARAKRLLESRQA 122 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + L+ ++ I V R V L E IL Y M N+G + + Q+ Sbjct: 123 SKKPLENEDDTLSIHGIHVHFPSRTVTVDEADITLTHTEFEILAYFMKNQGIVLTREQLI 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 S I+G ++ A ++ V SHI LR KL K + + GY + N Sbjct: 183 SRIWG-YEFAGDDRTVNSHIRNLRNKLGEK--AKYITTVVRTGYKFEGN 228 >gi|237732127|ref|ZP_04562608.1| transcriptional response regulatory protein [Citrobacter sp. 30_2] gi|226907666|gb|EEH93584.1| transcriptional response regulatory protein [Citrobacter sp. 30_2] Length = 240 Score = 144 bits (363), Expect = 8e-33, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 89/224 (39%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + I + N + D+ ++ L G L Sbjct: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLINHGDLVLPYVRQTPPDLILLDLML--PGTDGL 70 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 L R IR S+VP++ ++ L + G DD + KP RE++ARV + Sbjct: 71 TLCREIRRFSEVPIMMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + P+ V +G++ L E R+L+ L GK ++ Q+ + +Y Sbjct: 131 QRELQQMDADSPLIVDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190 Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + V + ++SHI LR+KL + + + +GY + Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLESLDTEQSFIRAVYGVGYRWE 233 >gi|300715551|ref|YP_003740354.1| Response regulator in two-component regulatory system with PhoR [Erwinia billingiae Eb661] gi|299061387|emb|CAX58497.1| Response regulator in two-component regulatory system with PhoR [Erwinia billingiae Eb661] Length = 229 Score = 144 bits (363), Expect = 8e-33, Method: Composition-based stats. Identities = 38/222 (17%), Positives = 90/222 (40%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D A +++ + + + L D+ ++ L G G + Sbjct: 5 ILVVEDEAPIREMLCFVLEQNDYQPIEAEDYDSAVNLLIEPWPDLILLDWMLPGGSGIQF 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ + +P++ ++ + + + G DD + KP +E++AR+ A+ RR+ Sbjct: 65 IKHLKREAMTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRRIS 124 Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 E + + + + E ++L + M + + ++ Q+ + ++ Sbjct: 125 PMAVEEVIEMQGLSLDPSSHRVMSDTQPLEMGPTEYKLLHFFMTHPERVYSREQLLNHVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G + VE+ V+ HI +LRK L V + R GY Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALELTGHDRMVQTVRGTGYRF 225 >gi|298243980|ref|ZP_06967787.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297557034|gb|EFH90898.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 252 Score = 144 bits (363), Expect = 8e-33, Method: Composition-based stats. Identities = 39/233 (16%), Positives = 91/233 (39%), Gaps = 17/233 (7%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + +G +E N E D+ ++ + G LE Sbjct: 20 LVVDDEENIIEFIRLGLRYEGFQVESANDGETGIATALRINPDIIILDVMMP-PGIDGLE 78 Query: 63 LPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----------REI 108 + R +R + +P++ ++ ++ + +G DD + KP R Sbjct: 79 VCRRLRENPTTREIPILMLTARDEVRDRIAGLRTGADDYLTKPFDFDELLERIRAILRRQ 138 Query: 109 LARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 + + N E +R+ + R+ G + L E +L M++ + + Sbjct: 139 GRTKSPQGAAGAENGNMLEFEDLRMNTATREVTRAGRLIELTATEYNLLHLFMSHPRQVL 198 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 + I ++G ++ E N++E ++ LR+K+ + + + R +GY + Sbjct: 199 DRQTILQRVWG-YEFLGETNIIEVYVRYLREKIEDSPSTPRLIQTVRSVGYVL 250 >gi|229825510|ref|ZP_04451579.1| hypothetical protein GCWU000182_00870 [Abiotrophia defectiva ATCC 49176] gi|229790073|gb|EEP26187.1| hypothetical protein GCWU000182_00870 [Abiotrophia defectiva ATCC 49176] Length = 223 Score = 144 bits (363), Expect = 8e-33, Method: Composition-based stats. Identities = 50/222 (22%), Positives = 105/222 (47%), Gaps = 7/222 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWL-QSSAREDVSAIEAFLIGKGEKV 60 +++DD + ++ +G + E + + + ++ ++ Sbjct: 6 ILVVDDESRMRKLVKDFLHHEGYEVVEAEDGEKAVDIFFADSSIELIILDVM--MPKMDG 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119 ++ R IR HS VP+I ++ + L F+ GVD+ V+KP + ++ARV AI R Sbjct: 64 WQVCREIRRHSTVPIIMLTAKSDEKDELQGFELGVDEYVSKPFSPKILMARVEAILRRSG 123 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 VS++ E G I++ + + G L +E +L Y M N+G +++ +I + ++ Sbjct: 124 AVSDDCLEAGGIKIDRASHEVIIDGSPVDLSVKEFELLLYFMTNKGIALSREKILNNVW- 182 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +D + +++H+ KLR K+ +K D + + +GY + Sbjct: 183 NYDYFGDARTIDTHVKKLRAKMGDKG--DLIKTIWGIGYKFE 222 >gi|229160872|ref|ZP_04288862.1| Two-component response regulator vanR [Bacillus cereus R309803] gi|228622609|gb|EEK79445.1| Two-component response regulator vanR [Bacillus cereus R309803] Length = 242 Score = 144 bits (363), Expect = 8e-33, Method: Composition-based stats. Identities = 41/229 (17%), Positives = 86/229 (37%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + A +G + ++ E + ++ R ++ ++ + Sbjct: 16 ILIVDDDQDIVRFVNANLMREGFKVFSAHNGEEALEIINNNRIQLAILDIM--MPQMDGI 73 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARVA 113 EL R IR +P++ +S S + F +G DD + KP E Sbjct: 74 ELCRRIREKHSLPIMFLSAKSSDIDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 133 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 +V + + + R + GE L + E IL + A + + +I Sbjct: 134 FNRNDAQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYDILYLMAAAKNRVFTIEEI 193 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + +++ N V HI++LR K+ + + + +GY I+ Sbjct: 194 YESVWKERAYE-SNNTVMVHIARLRNKIEENPKEPEFIQNIWGVGYKIE 241 >gi|291326910|ref|ZP_06126309.2| phosphate regulon transcriptional regulatory protein PhoB [Providencia rettgeri DSM 1131] gi|291312483|gb|EFE52936.1| phosphate regulon transcriptional regulatory protein PhoB [Providencia rettgeri DSM 1131] Length = 244 Score = 144 bits (363), Expect = 8e-33, Method: Composition-based stats. Identities = 42/222 (18%), Positives = 94/222 (42%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D A +++ + +G + + D+ ++ + G G +V Sbjct: 20 ILVVEDEAPIREMVCFVLEQNGFQPIEADDYDSAIAQLVDPLPDLVLLDWMIPGGSGIQV 79 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ + A VP++ ++ + + + G DD + KP +E++ARV AI RR+ Sbjct: 80 IKHMKRDSATRDVPVMMLTARGEEEDRVKGLEVGADDYLIKPFSPKELIARVKAILRRIS 139 Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + E + + + E ++L + M + + ++ Q+ + ++ Sbjct: 140 PMATEDIIEMNGLTLDPTSHRVTSNDIPIDMGPTEYKLLHFFMTHPERVYSREQLLNYVW 199 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G + VE+ V+ HI +LRK L + V + R GY Sbjct: 200 GA-NVYVEDRTVDVHIRRLRKALETEGHDKMVQTVRGTGYRF 240 >gi|33336059|gb|AAQ12900.1| response regulator protein [Enterococcus faecium] Length = 220 Score = 144 bits (363), Expect = 8e-33, Method: Composition-based stats. Identities = 51/221 (23%), Positives = 92/221 (41%), Gaps = 7/221 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + + A + G ++ + ++ L G Sbjct: 5 ILLVEDDDHICNTVRAFLAEAGYQVDACTDGNEAYTKFYENTYQLVILDIML--PGMNGH 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL R RA + P++ ++ + + FD+ DD V KP + +L RV A+ RR Sbjct: 63 ELLREFRAKNDTPILMMTALSDDENQIRAFDAEADDYVTKPFKMQILLKRVEALLRRSGA 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 G + + + G PL R+E IL L+ N+G+ + I S I+G + Sbjct: 123 LAKEIRVGRLTLLPEDFTVLCDGTELPLTRKEFEILLLLVQNKGRTLTHEIILSRIWG-Y 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 D + + V +HI LR KL + + + R +GY ++ Sbjct: 182 DFEGDGSTVHTHIKNLRAKLPE----NIIKTIRGVGYRLEE 218 >gi|282896672|ref|ZP_06304680.1| Two component Transcriptional regulator, Winged helix family [Raphidiopsis brookii D9] gi|282900162|ref|ZP_06308118.1| Two component Transcriptional regulator, Winged helix family [Cylindrospermopsis raciborskii CS-505] gi|281194911|gb|EFA69852.1| Two component Transcriptional regulator, Winged helix family [Cylindrospermopsis raciborskii CS-505] gi|281198390|gb|EFA73278.1| Two component Transcriptional regulator, Winged helix family [Raphidiopsis brookii D9] Length = 247 Score = 144 bits (363), Expect = 8e-33, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 90/228 (39%), Gaps = 9/228 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++IDD + + G + + L + D+ ++ L G + Sbjct: 4 ILVIDDDPAISELVAVNLEMAGYDVSQAEDGIKGQALALQLQPDLILLDLMLPRVDGFTI 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R +++P++ ++ Q ++ F++G DD + KP E+LARV A+ RR Sbjct: 64 CQRLRRDERTAEIPVLMLTALNQTQYKVEGFNAGADDYLTKPFEVEEMLARVRALLRRAD 123 Query: 121 VSNNRAETGPIRVF------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 A+ I + + + E L E +L L+ G+ V+ ++I Sbjct: 124 RIPQAAKHSEILNYGSLTLVPERFEAIWFHETVKLTHLEFELLHCLLQRHGQTVSPSEIL 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 ++G +D + + HI LR KL + + GY ++ Sbjct: 184 REVWG-YDPDDDIETIRVHIRHLRTKLEPDPRRPRYIKTVYGAGYCLE 230 >gi|167759612|ref|ZP_02431739.1| hypothetical protein CLOSCI_01970 [Clostridium scindens ATCC 35704] gi|167662738|gb|EDS06868.1| hypothetical protein CLOSCI_01970 [Clostridium scindens ATCC 35704] Length = 229 Score = 144 bits (363), Expect = 8e-33, Method: Composition-based stats. Identities = 47/229 (20%), Positives = 87/229 (37%), Gaps = 10/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +D S+ F + + + D++ ++ L Sbjct: 3 ILVVDDEKEIADVIELYLQNDQYSVYKFYTGQEALDCIGGMKIDLAILDIML--PDIDGF 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + IR P+I ++ + G DD + KP + E++ARV A RR Sbjct: 61 QILKQIREKYTFPVIMLTAKTEYMDKITGLTLGADDYIPKPFNPLELVARVKAQLRRYTQ 120 Query: 122 SNNRAETGPIRVFS-------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N A+ + + L E IL L NRGK ++ ++F Sbjct: 121 YNEGAKEEGEIIDFGGLVLNRTSHECIYNEMPLTLTPIEFDILWLLCENRGKVISSEELF 180 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSIDW 222 ++ N V HI LR+K+ G D + + +GY ++ Sbjct: 181 EKVWHEKYYKNSNNTVMVHIRHLREKMNAPTGKSDFIKTVWGVGYKVEE 229 >gi|146280822|ref|YP_001170975.1| DNA-binding response regulator PhoB [Pseudomonas stutzeri A1501] gi|145569027|gb|ABP78133.1| DNA-binding response regulator PhoB [Pseudomonas stutzeri A1501] gi|327479090|gb|AEA82400.1| DNA-binding response regulator PhoB [Pseudomonas stutzeri DSM 4166] Length = 229 Score = 144 bits (363), Expect = 8e-33, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 94/224 (41%), Gaps = 9/224 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A +++ + G + + L + D+ ++ L G + Sbjct: 6 ILIVDDEAPIREMIVVALEMAGYDCLEAENTQQAHALIIDRKPDLILLDWML--PGTSGI 63 Query: 62 ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IY 116 EL R ++ + P+I ++ + + G DD + KP RE++AR+ A Sbjct: 64 ELARRLKRDELTADTPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 S E G + + + G+ + E R+L++ M ++ + ++Q+ Sbjct: 124 ATPVDSEAPIEIGGLLLDPVSHRVTIDGKPAEMGPTEYRLLQFFMTHQERAYTRSQLLDQ 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + VEE V+ HI +LRK L + V + R GY Sbjct: 184 VWG-GNVYVEERTVDVHIRRLRKALGEAYE-NLVQTVRGTGYRF 225 >gi|168334022|ref|ZP_02692241.1| two component transcriptional regulator, winged helix family protein [Epulopiscium sp. 'N.t. morphotype B'] Length = 227 Score = 144 bits (363), Expect = 8e-33, Method: Composition-based stats. Identities = 47/223 (21%), Positives = 91/223 (40%), Gaps = 8/223 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD L+ G + +G ++ S DV ++ L LE Sbjct: 6 LVVDDEKLIVKGIVFSLSQEGWDVDSAYDGAEAINAIKSENYDVVILDVML--PEYTGLE 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + +I+R S VP+I ++ + + G DD + KP + E+ AR+ A+ RR Sbjct: 64 VCQIVREFSNVPIIMLTAKGDDMDKIMGLEYGADDYITKPFNVLELKARIKAVLRRSIQE 123 Query: 123 NNRAETGPIRVF----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + + + L +E +LE +RGK + Q+ +I+ Sbjct: 124 KETEKKTLEIGDLRLECNSKRVFLNNNEINLTSKEFDMLELFATHRGKVYNREQLLDSIW 183 Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 G + V+ H+ +LR+K+ N + + +K +GY Sbjct: 184 GKG-YPGDVRTVDVHVRRLREKVEPNPGQPEYIYTKWGVGYYF 225 >gi|154506023|ref|ZP_02042761.1| hypothetical protein RUMGNA_03565 [Ruminococcus gnavus ATCC 29149] gi|153793522|gb|EDN75942.1| hypothetical protein RUMGNA_03565 [Ruminococcus gnavus ATCC 29149] Length = 226 Score = 144 bits (363), Expect = 8e-33, Method: Composition-based stats. Identities = 45/218 (20%), Positives = 88/218 (40%), Gaps = 4/218 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D A +++G +G + + E L ++ D+ ++ L Sbjct: 4 ILIIEDDADLREGLEYTLSGEGYQILTAENAERGRKLWKTSSCDLILLDCNL--PDGNGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L IR S V ++ ++ + + + GVDD + +L K Sbjct: 62 SLCSEIRKSSDVFILMLTARDTELDEVKALEMGVDDYM-SKPFSIAVLKARIKKLLSRKS 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + IR+ + EV L + E ++L Y + N G+ ++K QI I+ Sbjct: 121 EKQWISSNGIRLDKSSCQVICKEEVLELSKIEYKLLLYFLENPGQILSKEQILERIWDKD 180 Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218 + V+EN V +I +LR+K+ + + + LGY Sbjct: 181 GKFVDENTVSVNIRRLRRKIEADPQNPQWIQTVHGLGY 218 >gi|329296532|ref|ZP_08253868.1| winged helix family two component transcriptional regulator [Plautia stali symbiont] Length = 229 Score = 144 bits (363), Expect = 8e-33, Method: Composition-based stats. Identities = 37/222 (16%), Positives = 89/222 (40%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D A +++ + + + D+ ++ L G G + Sbjct: 5 ILVVEDEAPIREMLCFVLEQNDYQPIEAEDYDSAIGKLIEPWPDLILLDWMLPGGSGIQF 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ + +P++ ++ + + + G DD + KP +E++AR+ A+ RR+ Sbjct: 65 IKHLKREAMTRDIPVMMLTALGEEEDRVRGLELGADDYITKPFSPKELMARIKAVMRRIS 124 Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 E + + + + E ++L + M + + ++ Q+ + ++ Sbjct: 125 PMAVEEVIEMQGLSLDPSSHRVMSETTPLEMGPTEYKLLHFFMTHPERVYSREQLLNHVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G + VE+ V+ HI +LRK L V + R GY Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALEVSGHDRMVQTVRGTGYRF 225 >gi|196033613|ref|ZP_03101025.1| DNA-binding response regulator [Bacillus cereus W] gi|195994047|gb|EDX58003.1| DNA-binding response regulator [Bacillus cereus W] Length = 232 Score = 144 bits (363), Expect = 8e-33, Method: Composition-based stats. Identities = 40/229 (17%), Positives = 83/229 (36%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +G + + E + ++ ++ ++ + Sbjct: 6 ILIVDDDQDIVRFMNVNLMQEGFKVFSAYNGEEALEIINNNSIQLAILDIM--MPQMDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARVA 113 EL R IR +P+I +S S + F +G DD + KP E Sbjct: 64 ELCRRIREKHSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 123 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 ++V + + + R + GE L + E IL + A + + +I Sbjct: 124 FNQHAVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYDILFLMAAAKNRVFTIEEI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + +++ N V HI++LR K+ + + +GY I+ Sbjct: 184 YESVWKERAYE-SNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIE 231 >gi|86606539|ref|YP_475302.1| DNA-binding response regulator RpaA [Synechococcus sp. JA-3-3Ab] gi|86555081|gb|ABD00039.1| DNA-binding response regulator RpaA [Synechococcus sp. JA-3-3Ab] Length = 251 Score = 144 bits (363), Expect = 8e-33, Method: Composition-based stats. Identities = 47/228 (20%), Positives = 92/228 (40%), Gaps = 9/228 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++I+D + D G + + L D+ ++ L G V Sbjct: 4 ILIIEDDPSILDILRINLELAGYEVVKATDGVRGQALALQVLPDLIILDLMLPQVDGLTV 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R S++P++ ++ Q ++ F++G DD + KP +E+L RV A+ RR Sbjct: 64 CQRLRREERTSEIPILMLTALGQTQDKIEGFNAGADDYLTKPFEVQELLVRVRALLRRAD 123 Query: 121 VSNNRAETGPIRVF------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 A+ G I + + + G+ L E +L LM G+ V+ ++I Sbjct: 124 RIPQTAKHGEILTYGPLTLVPERFEAVWFGKTIKLTHLEFDLLHCLMQRHGQTVSPSEIL 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 ++G ++ + + HI LR KL + + + GY ++ Sbjct: 184 QEVWG-YEPDDDIETIRVHIRHLRTKLEPDPRHPQYIKTVYGAGYCLE 230 >gi|238795237|ref|ZP_04638821.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia intermedia ATCC 29909] gi|238725430|gb|EEQ17000.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia intermedia ATCC 29909] Length = 239 Score = 144 bits (363), Expect = 8e-33, Method: Composition-based stats. Identities = 38/224 (16%), Positives = 91/224 (40%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A +++ + +G + S D+ ++ L G + Sbjct: 15 ILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRLSEPFPDLVLLDWML--PGGSGI 72 Query: 62 ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 + + ++ +P++ ++ + + + G DD + KP +E++AR+ A+ RR Sbjct: 73 QFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRR 132 Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + E + + + + E ++L + M + + ++ Q+ + Sbjct: 133 ISPMAVEEVIEMQGLSLDPSSHRVMANEQALDMGPTEFKLLHFFMTHPERVYSREQLLNY 192 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + VE+ V+ HI +LRK L V + R GY Sbjct: 193 VWGT-NVYVEDRTVDVHIRRLRKALEIDGHDRMVQTVRGTGYRF 235 >gi|309807854|ref|ZP_07701786.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners LactinV 01V1-a] gi|308168956|gb|EFO71042.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus iners LactinV 01V1-a] Length = 244 Score = 144 bits (363), Expect = 8e-33, Method: Composition-based stats. Identities = 42/225 (18%), Positives = 87/225 (38%), Gaps = 11/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G ++ E D+ ++ L + L Sbjct: 15 ILIVDDEKTISDIIKFNLTKEGYEVDTAYDGEEAVKKVDEFNPDLMILDLML--PKKDGL 72 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-------ILARVAA 114 E+ R +R + +I ++ + + + G DD V KP +RE L R Sbjct: 73 EVAREVRQSHDLSIIMVTAKAAEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRREI 132 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + N G + + + E G L RE +L YL + G+ + + + Sbjct: 133 TQKSKPDENANITIGNLVIMPEAYIVEKAGTNIELTHREFELLRYLAQHMGQVMTREHLL 192 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGY 218 ++G +D + V+ + +LR+K+ + + ++R +GY Sbjct: 193 QTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSTPSILVTRRGVGY 236 >gi|308172233|ref|YP_003918938.1| two-component response regulator [Bacillus amyloliquefaciens DSM 7] gi|307605097|emb|CBI41468.1| two-component response regulator [YclK] [Bacillus amyloliquefaciens DSM 7] gi|328552043|gb|AEB22535.1| two-component response regulator (YclK) [Bacillus amyloliquefaciens TA208] gi|328910307|gb|AEB61903.1| two-component response regulator [Bacillus amyloliquefaciens LL3] Length = 227 Score = 144 bits (363), Expect = 8e-33, Method: Composition-based stats. Identities = 48/229 (20%), Positives = 89/229 (38%), Gaps = 11/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D V F +G E + + D+ ++ L + Sbjct: 3 ILMIEDNISVCTMTEMFFFKEGFEAEFVHDGVEGYQRFTEEDWDLVILDIML--PSMDGV 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R IR S VP+I ++ + + F+ G DD V KP ++AR+ A+ RR + Sbjct: 61 TICRKIRETSSVPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARIKAVIRRYRA 120 Query: 122 SNN-------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + V L +E +L YL+ N + ++ Q+ Sbjct: 121 TGQAVKSDDLIETACFSINKKTREVFLHGKSVENLTPKEFDLLFYLVQNPRQVFSREQLL 180 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 ++G + +E V+ HI +LRKKL + + + +GY D + Sbjct: 181 EQVWG-YQFYGDERTVDVHIKRLRKKLSSD-EKPFLYTVWGVGYKFDED 227 >gi|229169569|ref|ZP_04297273.1| Two-component response regulator [Bacillus cereus AH621] gi|228613959|gb|EEK71080.1| Two-component response regulator [Bacillus cereus AH621] Length = 242 Score = 144 bits (363), Expect = 8e-33, Method: Composition-based stats. Identities = 45/230 (19%), Positives = 90/230 (39%), Gaps = 11/230 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ ++G + E + + ++ + Sbjct: 15 ILIVDDEKEIRKLIAIYLKNEGYEVLQAGDGEEGLEIVRKRDVHLIVLDIM--MPKIDGI 72 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + +R +++P+I +S + +G DD V KP + E++AR+ + RR Sbjct: 73 HMCMKVREIAEMPIIMLSAKTQDMDKILGLTTGADDYVAKPFNPLELIARIKSQLRRYMK 132 Query: 122 S-------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N E G I++ R + E L RE +LE L N+G + QI+ Sbjct: 133 MSGASVKDENVFEVGDIKINIATRQVIIANEEVKLTPREFEVLELLARNQGMVLNAEQIY 192 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223 ++ +N V HI K+R+K+ + + +GY I+ + Sbjct: 193 ERVWKEQAFQ-SDNTVMVHIRKIREKIEAIPRKPRYIKTIWGVGYKIEKD 241 >gi|160932361|ref|ZP_02079752.1| hypothetical protein CLOLEP_01197 [Clostridium leptum DSM 753] gi|156868963|gb|EDO62335.1| hypothetical protein CLOLEP_01197 [Clostridium leptum DSM 753] Length = 233 Score = 144 bits (363), Expect = 8e-33, Method: Composition-based stats. Identities = 38/230 (16%), Positives = 82/230 (35%), Gaps = 11/230 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D ++ ++ F + + D++ ++ L Sbjct: 5 ILIVDDEVEIADLIEVYLKNENYTVFKFYTAMEALECIDTTTLDLAILDIML--PDISGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARVA 113 L + IR P+I ++ + + G DD + KP E+ Sbjct: 63 TLCQKIRERYTYPVIMLTAKDTETDKITGLTLGADDYITKPFRPLEMVARVKSQLRRYKK 122 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + + + + + + L E IL+ L+ NRG ++ ++ Sbjct: 123 YNVTLPEEKRHIILYSNLTLDIKKHECLLNDKPISLTPTEFSILQILLENRGIVISGEEL 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 F I+ N + HI +LR+KL + L + + +GY I+ Sbjct: 183 FHRIWKDEYYTKSNNTITVHIRRLREKLGDTLENPKYIKTIWGVGYKIEE 232 >gi|42782326|ref|NP_979573.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|217960663|ref|YP_002339227.1| DNA-binding response regulator [Bacillus cereus AH187] gi|222096718|ref|YP_002530775.1| DNA-binding response regulator [Bacillus cereus Q1] gi|228986323|ref|ZP_04146460.1| DNA-binding response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229139866|ref|ZP_04268431.1| DNA-binding response regulator [Bacillus cereus BDRD-ST26] gi|229197364|ref|ZP_04324091.1| DNA-binding response regulator [Bacillus cereus m1293] gi|42738251|gb|AAS42181.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|217065124|gb|ACJ79374.1| DNA-binding response regulator [Bacillus cereus AH187] gi|221240776|gb|ACM13486.1| DNA-binding response regulator [Bacillus cereus Q1] gi|228585988|gb|EEK44079.1| DNA-binding response regulator [Bacillus cereus m1293] gi|228643531|gb|EEK99797.1| DNA-binding response regulator [Bacillus cereus BDRD-ST26] gi|228773350|gb|EEM21779.1| DNA-binding response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 225 Score = 144 bits (363), Expect = 8e-33, Method: Composition-based stats. Identities = 42/221 (19%), Positives = 94/221 (42%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L DD +++ +G ++ + + + ++ ++ Sbjct: 6 ILLADDDKHIRELLHYHLQKEGFTVFEAEDGKVAQEVLEKENIHLAIVDIM--MPFVDGY 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L IR + +P+I ++ L F SG DD + KP E++ R+ A+ RR ++ Sbjct: 64 TLCEEIRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQM 123 Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + T + G + + G+ LP +E +L L + G+ ++ ++ ++G+ Sbjct: 124 LSADIITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM 183 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D +E V+ H+ +LR + + + + R LGY ++ Sbjct: 184 -DFEGDERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 223 >gi|269217323|ref|ZP_06161177.1| regulatory protein VanR [Slackia exigua ATCC 700122] gi|269129460|gb|EEZ60545.1| regulatory protein VanR [Slackia exigua ATCC 700122] Length = 238 Score = 144 bits (363), Expect = 8e-33, Method: Composition-based stats. Identities = 42/229 (18%), Positives = 79/229 (34%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L DD + + L +G ++ L D++ ++ L Sbjct: 13 ILLADDDPDILEVVSVLLASEGYRVDAARDGLEALALAR-HPFDLAILDVM--MPKASGL 69 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR--------EILARVA 113 E+ +R S P++ ++ + +G DD + KP + Sbjct: 70 EVCERLRLSSNAPILFLTARSQDADKVAGLAAGGDDYLVKPFSTPELLARVKAMLRRYRQ 129 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + + GP+ + + R L E +L L NRG+ V+ ++ Sbjct: 130 YGSAQGAQTGETIQAGPVLIDTRARRVSKGETPVALTDLEYEVLLALARNRGRVVSAREL 189 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 + ++ N V +HI LRKKL V + GY+ID Sbjct: 190 YENVWRSMYLPQSNNTVMAHIKNLRKKLEADPRDPQIVRTVWGRGYTID 238 >gi|218898303|ref|YP_002446714.1| DNA-binding response regulator [Bacillus cereus G9842] gi|228901739|ref|ZP_04065911.1| DNA-binding response regulator [Bacillus thuringiensis IBL 4222] gi|228966150|ref|ZP_04127212.1| DNA-binding response regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|218542653|gb|ACK95047.1| DNA-binding response regulator [Bacillus cereus G9842] gi|228793519|gb|EEM41060.1| DNA-binding response regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|228857871|gb|EEN02359.1| DNA-binding response regulator [Bacillus thuringiensis IBL 4222] Length = 225 Score = 144 bits (363), Expect = 8e-33, Method: Composition-based stats. Identities = 42/221 (19%), Positives = 93/221 (42%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L DD +++ +G + + + + ++ ++ Sbjct: 6 ILLADDDKHIRELLHYHLQKEGFKVFEAEDGKIAQEVLEKENIHLAIVDIM--MPFVDGY 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L IR + +P+I ++ L F SG DD + KP E++ R+ A+ RR ++ Sbjct: 64 TLCEEIRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQM 123 Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + T + G + + G+ LP +E +L L + G+ ++ ++ ++G+ Sbjct: 124 LSADIITLHGTTIDRKGFEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM 183 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D +E V+ H+ +LR + + + + R LGY ++ Sbjct: 184 -DFEGDERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 223 >gi|188026544|ref|ZP_02962517.2| hypothetical protein PROSTU_04645 [Providencia stuartii ATCC 25827] gi|188019362|gb|EDU57402.1| hypothetical protein PROSTU_04645 [Providencia stuartii ATCC 25827] Length = 260 Score = 144 bits (363), Expect = 8e-33, Method: Composition-based stats. Identities = 40/222 (18%), Positives = 93/222 (41%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D A +++ + +G + + D+ ++ + G G +V Sbjct: 36 ILVVEDEAPIREMVCFVLEQNGFQSIEADDYDSAIAQLVDPLPDLVLLDWMIPGGSGIQV 95 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ + +P++ ++ + + + G DD + KP +E++ARV AI RR+ Sbjct: 96 IKHMKRDSDTRDIPVMMLTARGEEEDRVKGLEVGADDYLIKPFSPKELVARVKAILRRIS 155 Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + E + + + E ++L + M + + ++ Q+ + ++ Sbjct: 156 PMATEDIIEMNGLTLDPTSHRVSSNDTPIDMGPTEYKLLHFFMTHPERVYSREQLLNYVW 215 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G + VE+ V+ HI +LRK L + V + R GY Sbjct: 216 GA-NVYVEDRTVDVHIRRLRKALEAEGHDKMVQTVRGTGYRF 256 >gi|160893062|ref|ZP_02073850.1| hypothetical protein CLOL250_00607 [Clostridium sp. L2-50] gi|156865145|gb|EDO58576.1| hypothetical protein CLOL250_00607 [Clostridium sp. L2-50] Length = 228 Score = 144 bits (363), Expect = 8e-33, Method: Composition-based stats. Identities = 43/225 (19%), Positives = 91/225 (40%), Gaps = 10/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD L+ G D + ++ + D+ ++ + +E Sbjct: 5 LVVDDEKLIVKGLKFSLEQDDMEVDVAYDGGEAFEKIKNNSYDIVLLDIMI--PVYTGIE 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH------HREILARVAAIY 116 + +++R S VP+I ++ + + G DD + KP + + + R + Sbjct: 63 VCQMVREFSNVPIIMLTAKGEDMDKIMGLEYGADDYITKPFNILEVKARIKAILRRSGKK 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 N E ++V D R V G+ L +E +LE LMA+ K ++ ++ Sbjct: 123 AEPVKPVNIMEINGMKVELDSRRVFVHGKELNLTAKEFDLLELLMAHPNKVYSRNELLDT 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 I+G + V+ H+ +LR+K+ + + +K +GY Sbjct: 183 IWGST-YPGDARTVDVHVRRLREKIEDNPGEPVYIHTKWGVGYYF 226 >gi|66046101|ref|YP_235942.1| response regulator receiver:transcriptional regulatory protein, C-terminal [Pseudomonas syringae pv. syringae B728a] gi|63256808|gb|AAY37904.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Pseudomonas syringae pv. syringae B728a] Length = 227 Score = 144 bits (363), Expect = 8e-33, Method: Composition-based stats. Identities = 44/221 (19%), Positives = 83/221 (37%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + G S ++ + + ++ L G + Sbjct: 10 ILIVEDEPKLASLMRDYLIAAGYSTHCLSNGLDVVPAVRANAPQLILLDIML--PGRDGM 67 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + +R+ S VP++ I+ L D G DD + KP RE + R Sbjct: 68 DICKELRSFSDVPIVMITARVEEIDRLLGLDLGADDYICKPFSPRE-MVARVKAILRRSS 126 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 S+ ++V G L E R+L + G+ ++ + +Y Sbjct: 127 SSEPHTPKGLQVDEAHYQASFNGVTLDLTPVELRLLATFARSPGRVFSRDHLLDRLYSDH 186 Query: 182 DEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221 V + V+SHI LR+KL G DP+ S +GY ++ Sbjct: 187 -RVVTDRTVDSHIRNLRRKLEQACPGQDPIQSLYGVGYKLE 226 >gi|313496697|gb|ADR58063.1| DNA-binding response regulator CreB [Pseudomonas putida BIRD-1] Length = 255 Score = 144 bits (363), Expect = 8e-33, Method: Composition-based stats. Identities = 54/219 (24%), Positives = 94/219 (42%), Gaps = 5/219 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A + D + DG S E Q D+ ++ L Sbjct: 33 ILIVEDEAAIADTLVYALQADGHSTEWVTLGSAALDQQRQRPADLVILDIGL--PDISGF 90 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E R +R ++VP++ +S + + G DD V KP RE+ ARV AI +R+ Sbjct: 91 ETCRQLRRFTEVPVMFLSARDGEIDRVVGLEIGADDYVVKPFSPREVAARVRAILKRMAP 150 Query: 122 SNNRAETGP-IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 A ++ + + + L R E R+L+ L+ + ++ Q+ A+ G+ Sbjct: 151 RAEAAGGTSLFQLDTLRMQITYRSQPLTLTRHEFRLLQCLLEQPQRVFSREQLLDAL-GV 209 Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGY 218 + E ++SHI LR KLR +P+ + R LGY Sbjct: 210 ASDVGYERTIDSHIKSLRAKLRQVAGDAEPIQTHRGLGY 248 >gi|238916038|ref|YP_002929555.1| two-component system, OmpR family, phosphate regulon response regulator OmpR [Eubacterium eligens ATCC 27750] gi|238871398|gb|ACR71108.1| two-component system, OmpR family, phosphate regulon response regulator OmpR [Eubacterium eligens ATCC 27750] Length = 238 Score = 144 bits (363), Expect = 8e-33, Method: Composition-based stats. Identities = 49/227 (21%), Positives = 88/227 (38%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + D +G +E N D+ ++ L G Sbjct: 13 ILIVEDEESIADIEKDYLELNGYEVEVCNDGTSGLAAALHEDIDMCILDIML--PGTDGF 70 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + +R +P+I +S + G DD + KP E++ARV A R Sbjct: 71 EICKQVREVKDIPIIMVSAKKEDIDKIRGLGVGADDYMTKPFSPSELVARVKAHLARYDR 130 Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 +NN E I++ R V GE P +E +L +L N K ++F Sbjct: 131 LVSNSKNNNNIIEIRGIKIDKTARRVFVNGEEKPFTTKEFDLLTFLAENPNHVFTKEELF 190 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 I+ + D + V HI K+R+K+ + +++ +GY Sbjct: 191 KEIWDM-DSIGDIATVTVHIKKIREKIELDTSKPQYIETIWGVGYRF 236 >gi|254388578|ref|ZP_05003812.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|197702299|gb|EDY48111.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 243 Score = 144 bits (363), Expect = 8e-33, Method: Composition-based stats. Identities = 49/232 (21%), Positives = 94/232 (40%), Gaps = 16/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V++ +G + E S R D+ ++ L Sbjct: 10 ILIVDDEPAVREALQRSLAFEGYATEVAVDGIDALAKAESYRPDLLVLDI--QMPRMDGL 67 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 R +RA S VP++ ++ ++ + D+G DD + KP E+ AR+ A+ RR Sbjct: 68 TAARRLRATGSTVPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSS 127 Query: 121 VS------------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 + + +R+ R+ L R E +LE L+A+ + + Sbjct: 128 YASAAGDTASGDDGHEILSFADLRMDLATREVHRGERAVELTRTEFTLLELLLAHPRQVL 187 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + QI +++G FD N ++ ++ LR+K V + R +GY + Sbjct: 188 TREQILKSVWG-FDFEPTSNSLDVYVMYLRRKTEAGGEPRIVHTVRGVGYVL 238 >gi|169833990|ref|YP_001695445.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Streptococcus pneumoniae Hungary19A-6] gi|168996492|gb|ACA37104.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus pneumoniae Hungary19A-6] Length = 235 Score = 144 bits (363), Expect = 8e-33, Method: Composition-based stats. Identities = 41/230 (17%), Positives = 88/230 (38%), Gaps = 15/230 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L+DD + +G S + + L + D ++ L +E Sbjct: 6 LLVDDEEHILKLLYYHLSKEGFSTQLVTNGRKALALAETEPFDFILLDIML--PQLDGME 63 Query: 63 LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILAR 111 + + +RA + P++ +S + + G DD + KP R Sbjct: 64 VCKRLRAKGVKTPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELLARVKAVLRRTKG 123 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 ++++ G ++V+ + + ++ L +E +L YLM + + + Sbjct: 124 EQEGDDSDNIADDSWLFGTLKVYPERHEVYKANKLLSLTPKEFELLLYLMKHPNMTLTRE 183 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++ I+G +D E +V+ HI KLR+K+ + + + R GY Sbjct: 184 RLLERIWG-YDFGQETRLVDVHIGKLREKIEDNPKAPQFIRTIRGYGYKF 232 >gi|117620062|ref|YP_854674.1| GltR [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561469|gb|ABK38417.1| GltR [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 244 Score = 144 bits (363), Expect = 8e-33, Method: Composition-based stats. Identities = 44/229 (19%), Positives = 81/229 (35%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ G + L + D+ ++ G+ Sbjct: 11 LLIVDDDQEIRELLNEYLTRAGFEVLTAAEGNEMRKLLAQHNPDLIILDIM--MPGDDGF 68 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L + IR SQVP+I ++ + + G DD + KP RE+ AR+ A+ RR + Sbjct: 69 TLCQQIRRDSQVPIIMLTAASDEADRVIGLELGADDYITKPFSPRELQARIKALLRRAEF 128 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPL---------PRRERRILEYLMANRGKRVAKTQ 172 E P R + +L + G + + Sbjct: 129 RQPEKEKEPSRRLRFAEWTLDTLSHQRTHEDGSLLDLSGSDALLLGMFLQQPGVVLDRDT 188 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 I A G + E ++ IS+LR+KL + + + R GY + Sbjct: 189 ISDATRGR-ESLPMERGIDVQISRLRQKLGDNGKSPRIIKTIRGSGYML 236 >gi|315659978|ref|ZP_07912836.1| response regulator [Staphylococcus lugdunensis M23590] gi|315494879|gb|EFU83216.1| response regulator [Staphylococcus lugdunensis M23590] Length = 238 Score = 144 bits (363), Expect = 8e-33, Method: Composition-based stats. Identities = 48/224 (21%), Positives = 93/224 (41%), Gaps = 12/224 (5%) Query: 4 LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63 ++DD + D +G + L D+ ++ L G +E+ Sbjct: 12 VVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIML--PGRDGMEV 69 Query: 64 PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123 R +R ++P+I ++ S + + G DD V KP RE++ARV A RR Sbjct: 70 CREVRKKFEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYSQP 129 Query: 124 NRAETG--------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + I ++ D + +GE L RE + YL + G+ + + + Sbjct: 130 AQEVNNASNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTREHLLQ 189 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218 ++G +D + V+ I +LR+K+ + + + ++R +GY Sbjct: 190 TVWG-YDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGY 232 >gi|227509078|ref|ZP_03939127.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227511985|ref|ZP_03942034.1| response regulator [Lactobacillus buchneri ATCC 11577] gi|227524971|ref|ZP_03955020.1| response regulator [Lactobacillus hilgardii ATCC 8290] gi|227084793|gb|EEI20105.1| response regulator [Lactobacillus buchneri ATCC 11577] gi|227087883|gb|EEI23195.1| response regulator [Lactobacillus hilgardii ATCC 8290] gi|227191465|gb|EEI71532.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 229 Score = 144 bits (363), Expect = 8e-33, Method: Composition-based stats. Identities = 44/227 (19%), Positives = 87/227 (38%), Gaps = 9/227 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + ++G S + D+ + ++ G + Sbjct: 3 ILVVDDDKEIAQLLEIYIRNEGYEPVSAYSGNEALTKLRTES-DIGLMILDIMMPGMNGI 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + +R SQ+P+I +S + SG DD V KP + E++ARV ++ RR + Sbjct: 62 EVIKEVRKDSQIPIIILSAKTEDMDKIQGLISGADDYVTKPFNPLEVMARVKSLLRRTEE 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQG------EVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + + + L E IL L ++ + + +IF Sbjct: 122 HVTNDTPDVLDIGPLTINKDSHEVKTITGTPIQLTALEFGILYLLASHPNRVFSADEIFE 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 ++ + V V H+S LR K+ G + + +GY I+ Sbjct: 182 RVW-RQESIVSAKTVMVHVSHLRDKIEEATNGEKVIQTVWGVGYKIE 227 >gi|184201479|ref|YP_001855686.1| OmpR family two-component response regulator [Kocuria rhizophila DC2201] gi|183581709|dbj|BAG30180.1| OmpR family two-component response regulator [Kocuria rhizophila DC2201] Length = 237 Score = 144 bits (363), Expect = 8e-33, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 91/224 (40%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + G + + + D++ ++ L Sbjct: 10 LLVVDDEPNILELLATSLRFAGFEVVTAANGRDALLKAEAEDPDLAVLDVML--PDIDGF 67 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R +R A P++ ++ + G DD V KP E++AR+ A+ RR + Sbjct: 68 SVTRKLRAAGRHFPILFLTAKDDTDDKVAGLTVGGDDYVTKPFSLDEVVARIRAVLRRTQ 127 Query: 121 VSNNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + D + G L E ++L YLM N + ++K QI + Sbjct: 128 PLEEEDSRLKVDGLVLDDDAHEVFRGGREIDLSPTEFKLLRYLMLNPNRVLSKAQILDHV 187 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 + +D + ++VES+IS LR+K+ N + +KR +GY + Sbjct: 188 W-EYDFNGDASIVESYISYLRRKIDNDPEQPSLIHTKRGVGYLL 230 >gi|167648501|ref|YP_001686164.1| two component transcriptional regulator [Caulobacter sp. K31] gi|167350931|gb|ABZ73666.1| two component transcriptional regulator, winged helix family [Caulobacter sp. K31] Length = 230 Score = 144 bits (363), Expect = 8e-33, Method: Composition-based stats. Identities = 59/222 (26%), Positives = 101/222 (45%), Gaps = 4/222 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVL 61 ++++D + +G + E + S D+ ++ L G +V Sbjct: 6 LVVEDEDALATLLHYNLDKEGYVVGVAGDGEEALTMASERAPDLVILDWMLPKVSGIEVC 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 R VP+I ++ + D+G DD V KP E+ ARV A+ RR++ Sbjct: 66 RRLRGRSETRNVPIIMLTARGEESDRIRGLDTGADDYVVKPFSMIELTARVRAVLRRIRP 125 Query: 122 --SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +++R G I + + QG+ L E R+L+YLM + G+ ++ Q+ A++G Sbjct: 126 GLADDRITVGDIVIDRVAHRVKRQGKEVHLGPTEFRLLDYLMQHPGRVFSREQLLDAVWG 185 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D VE V+ HI +LRK L + DP+ + R GYS+D Sbjct: 186 -SDVYVEARTVDVHIGRLRKALNGDVDGDPIRTVRSAGYSLD 226 >gi|309778700|ref|ZP_07673474.1| transcriptional activator protein CzcR [Ralstonia sp. 5_7_47FAA] gi|308922550|gb|EFP68173.1| transcriptional activator protein CzcR [Ralstonia sp. 5_7_47FAA] Length = 225 Score = 144 bits (363), Expect = 8e-33, Method: Composition-based stats. Identities = 49/221 (22%), Positives = 95/221 (42%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D A + + + G ++ + L S R D+ ++ L G Sbjct: 3 ILVIEDEARTAEYLLKGLTESGFVVDIAANGMDGAHLASEVRYDLILLDVML--PGADGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120 + ++IR S VP++ ++ + + F+ G DD + KP E+LAR+ + Sbjct: 61 SVIKMIRQKSDVPVLFLTARDDVADRVRGFELGADDYLVKPFAFAELLARIRRCLRQSSG 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + G + + GR G L +E +L L G+ +++T I S ++ + Sbjct: 121 RESEHLSVGDLDIDVLGRKVVRAGVKVELTSQEFVLLHLLARRSGEVLSRTSIASHVWDV 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + NVV+ I +LR KL + + R +GY +D Sbjct: 181 -NFDTDTNVVDVAIRRLRAKLDEPFDTKLIHTVRGMGYVLD 220 >gi|299069565|emb|CBJ40837.1| Transcriptional regulatory protein, probable baeR protein, response regulator for mdtABCD and acrD [Ralstonia solanacearum CMR15] Length = 233 Score = 144 bits (363), Expect = 8e-33, Method: Composition-based stats. Identities = 41/222 (18%), Positives = 86/222 (38%), Gaps = 5/222 (2%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 M ++++D + E + ++ ++ L G+ Sbjct: 15 MILIVEDEPKLAALMADYLRAAHYETEWVDDGTRAVQRVRETSPELVLLDLML--PGKDG 72 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R +RA S +P++ ++ L + G DD + KP RE+ R Sbjct: 73 LEICREVRAFSDLPIVMVTARVEEIDRLLGLELGADDYICKPFSPREL-VARIKTILRRV 131 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + +++ + ++G+ L E R+L L G+ +++ + IY Sbjct: 132 QRSGAQSDSLLQIDNTAYSATLRGQRLDLTPVEFRLLSALANAPGRILSRANLLEQIYDD 191 Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 V + V++H+ LR+K+ G + + S +GY +D Sbjct: 192 H-RVVTDRTVDTHVKNLRRKMELVSPGTELIHSVYGVGYRLD 232 >gi|239905562|ref|YP_002952301.1| KDP operon transcriptional regulatory protein KdpE [Desulfovibrio magneticus RS-1] gi|239795426|dbj|BAH74415.1| KDP operon transcriptional regulatory protein KdpE [Desulfovibrio magneticus RS-1] Length = 231 Score = 144 bits (363), Expect = 8e-33, Method: Composition-based stats. Identities = 42/224 (18%), Positives = 81/224 (36%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ +G ++ L +S DV ++ L Sbjct: 8 ILIVDDEPPIRRFLTPFLEAEGYAVVEAGLGREALSLIASHEPDVILLDLGL--PDMDGE 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH----HREILARVAAIYR 117 EL R + + +I +S + + D G D + KP I + Sbjct: 66 ELLRALPMWVRAKVIVLSVRARERDKVTALDLGASDYLTKPFSLAELAARIRVCLRRGGG 125 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + R G + + + + + L E ++L YL + GK V Q+ A+ Sbjct: 126 DGESPPTRYVFGELWIDMEAHTAGLAAQDLHLTPTEFKLLAYLARHAGKVVTHGQLLKAV 185 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 +G +E+ V HI KLR+K+ + ++ +GY Sbjct: 186 WGK-QSQGQEHYVRIHIHKLRQKIEQDPARPRYLRTETGIGYRF 228 >gi|188589410|ref|YP_001921180.1| regulatory protein VanR [Clostridium botulinum E3 str. Alaska E43] gi|188499691|gb|ACD52827.1| regulatory protein VanR [Clostridium botulinum E3 str. Alaska E43] Length = 237 Score = 144 bits (363), Expect = 8e-33, Method: Composition-based stats. Identities = 45/231 (19%), Positives = 93/231 (40%), Gaps = 15/231 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +++DD + + +G + + +L+ + + ++ ++ L Sbjct: 5 ILIVDDEIEILKLLETVLKKEGFNNVYTAKTLKEGLAEFNRVKPELVILDIML--PDGDG 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI----- 115 E+ + IR+ S VP++ +S + F G DD + KP +E+ RV A Sbjct: 63 YEICKDIRSKSNVPILFLSAKTEELDKILGFAIGGDDYITKPFSPKEVAFRVKAHLRRVN 122 Query: 116 -----YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + GP + + G+ L +E +IL L N+ + ++K Sbjct: 123 YNNENLNENNTEEKIIKFGPYVLNESRAELIKNGKTIELTAKELKILSLLAHNQNQIISK 182 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220 +++ ++G D +N + HI KLR+K+ + + R LGY + Sbjct: 183 EKLWDKVWGE-DYFGFDNTIMVHIRKLREKIEEDSSNPKYILTVRGLGYKL 232 >gi|17549382|ref|NP_522722.1| two-component response regulator transcription regulator protein [Ralstonia solanacearum GMI1000] gi|17431635|emb|CAD18312.1| probable two-component response regulator transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 219 Score = 144 bits (363), Expect = 8e-33, Method: Composition-based stats. Identities = 41/222 (18%), Positives = 86/222 (38%), Gaps = 5/222 (2%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 M ++++D + E + ++ ++ L G+ Sbjct: 1 MILIVEDEPKLAALMADYLRAAHYETEWVDDGTRAVQRVRETSPELVLLDLML--PGKDG 58 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R +RA S +P++ ++ L + G DD + KP RE+ R Sbjct: 59 LEICREVRAFSDLPIVMVTARVEEIDRLLGLELGADDYICKPFSPREL-VARIKTILRRV 117 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + +++ + ++G+ L E R+L L G+ +++ + IY Sbjct: 118 QRSGAQSDSLLQIDNTAYSATLRGQRLDLTPVEFRLLSALANAPGRILSRANLLEQIYDD 177 Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 V + V++H+ LR+K+ G + + S +GY +D Sbjct: 178 H-RVVTDRTVDTHVKNLRRKMELVSPGTELIHSVYGVGYRLD 218 >gi|257885040|ref|ZP_05664693.1| response regulator [Enterococcus faecium 1,231,501] gi|257820892|gb|EEV48026.1| response regulator [Enterococcus faecium 1,231,501] Length = 233 Score = 144 bits (363), Expect = 8e-33, Method: Composition-based stats. Identities = 48/232 (20%), Positives = 93/232 (40%), Gaps = 15/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L+DD + D +DG ++ F + D++ ++ L Sbjct: 5 ILLVDDEQEIADLIEVYLKNDGYEVQKFYLGQEALDCIERESFDLAVLDVML--PDIDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + IR + P+I ++ + G DD + KP + E++AR+ RR + Sbjct: 63 KIVQKIRENHFFPVIMLTAKIEDIDKITGLTLGADDYITKPFNPLEVVARIKTQLRRFQK 122 Query: 122 SNNRAET-----------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 N + + + + + GE L E IL YL+ +G+ V Sbjct: 123 YNIQVDYSTEESIKEIDIHGLIINQTLHTCTLYGETISLTPLEFAILWYLVERKGEVVPA 182 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 Q+F A++G N V +HI +LR+KL+ + + +GY ++ Sbjct: 183 EQLFEAVWGEKFLD-NNNTVMAHIGRLREKLKEPTRKPKFIKTIWGVGYKVE 233 >gi|255505410|ref|ZP_05345906.3| regulatory protein VanR [Bryantella formatexigens DSM 14469] gi|255268308|gb|EET61513.1| regulatory protein VanR [Bryantella formatexigens DSM 14469] Length = 245 Score = 144 bits (363), Expect = 8e-33, Method: Composition-based stats. Identities = 46/228 (20%), Positives = 84/228 (36%), Gaps = 10/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D ++ + + S + D++ ++ L Sbjct: 19 ILIVDDEREIADLVELYLKNENFQVYKYYSAADALRCIEKEKLDLAILDVML--PETDGF 76 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R IR P+I ++ + G DD + KP E++ARV A RR K Sbjct: 77 QICRKIREKYNYPVIMLTAKGEEVDKITGLTLGADDYITKPFLPLELVARVKAQLRRYKR 136 Query: 122 SNNRAETGPIRV-------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N A+ + + + L E IL L NRG+ V+ ++F Sbjct: 137 YNVGAQPQADVFEYGGLVLNVTTHECTLNEKPLVLTPTEFSILRILCQNRGRVVSSEELF 196 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 I+ N + HI LR+K+ + + + GY I+ Sbjct: 197 RQIWKEEYFTKNNNTITVHIRHLREKMGDSFENPKYIKTVWGCGYKIE 244 >gi|160881553|ref|YP_001560521.1| two component transcriptional regulator [Clostridium phytofermentans ISDg] gi|160430219|gb|ABX43782.1| two component transcriptional regulator, winged helix family [Clostridium phytofermentans ISDg] Length = 233 Score = 144 bits (363), Expect = 8e-33, Method: Composition-based stats. Identities = 50/229 (21%), Positives = 90/229 (39%), Gaps = 10/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD + D A + + E + V ++ E Sbjct: 4 ILIADDNPDITDVLAAYAKKEDLVPVIAADGEEAIRMFRQYNPAVVLLDVM--MPKEDGY 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IRA S VP+I I+ + D G DD + KP E++AR+ AI RR+ Sbjct: 62 EVCRKIRAKSDVPVILITARGEDFEKIMGLDIGADDYIVKPFSPSEVMARIRAILRRMTK 121 Query: 122 SNNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 N + + + + + G L ++E + L +N K + + Sbjct: 122 KENEQTSENVLSIANLEINLEEYTLHIGGTKISLTKKEIETMWTLASNPNKVFTRDNLLD 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSIDWN 223 +++G FD + V+SHI +LR KL + + + +GY + + Sbjct: 182 SLWG-FDYFGDSRTVDSHIKRLRAKLDMLEHPNWSIKTIWGVGYKFEVD 229 >gi|29831606|ref|NP_826240.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29608722|dbj|BAC72775.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 229 Score = 144 bits (363), Expect = 8e-33, Method: Composition-based stats. Identities = 43/219 (19%), Positives = 92/219 (42%), Gaps = 5/219 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + + +G + ++ D+ ++ L G +E Sbjct: 10 LVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFRESKPDLVLLDLML--PGRDGIE 67 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLKV 121 + R+IRA S VP++ ++ + +SG DD + KP +E++AR+ A R + Sbjct: 68 VCRLIRAESGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEEP 127 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + G + + G + G+ L E +L L + + + ++G + Sbjct: 128 APEQLGIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWG-Y 186 Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219 A + +V H+ +LR K+ + V + R +GY Sbjct: 187 RHAADTRLVNVHVQRLRSKVEKDPERPEIVVTVRGVGYK 225 >gi|326328836|ref|ZP_08195171.1| DNA-binding response regulator ResD [Nocardioidaceae bacterium Broad-1] gi|325953367|gb|EGD45372.1| DNA-binding response regulator ResD [Nocardioidaceae bacterium Broad-1] Length = 228 Score = 144 bits (363), Expect = 9e-33, Method: Composition-based stats. Identities = 42/222 (18%), Positives = 81/222 (36%), Gaps = 7/222 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD V++ + + E S D+ ++ L G LE Sbjct: 5 LVVDDDLTVREVLASYLRAGSHDVVEAGDGEQALRAMSERPADIVVLDLML--PGIDGLE 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDV--VNKPIHHREILARVAAIYRRLK 120 + R +R +VP+I ++ S + + G DD + Sbjct: 63 VCRRLRQAGEVPIIMLTALGSEADRIMGLELGADDYVGKPFSPRELVLRVDSVLKRTGHS 122 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 G I V +D R G L RE +L YL+A+ GK + + ++G Sbjct: 123 GEGGVVSDGSIVVDADRRVATNGGAELALTTREFDLLRYLIAHPGKAFTREDLLEHVWGW 182 Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 + + V H+ +LR+K+ + + + + +GY + Sbjct: 183 T--IGDRSTVTVHVRRLREKIESDPTRPERLVTVWGVGYRWE 222 >gi|315283631|ref|ZP_07871771.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Listeria marthii FSL S4-120] gi|313612736|gb|EFR86738.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Listeria marthii FSL S4-120] Length = 236 Score = 144 bits (363), Expect = 9e-33, Method: Composition-based stats. Identities = 47/233 (20%), Positives = 95/233 (40%), Gaps = 16/233 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A + G + L S + D+ ++ L + Sbjct: 4 ILVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLML--PEMDGI 61 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ + +R VP++ ++ + + G DD + KP RE++AR+ AI RR + Sbjct: 62 EVTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTE 121 Query: 121 VSNNRAETGPIR-----------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 E + D + +Q ++ L +E +L +L +RGK + Sbjct: 122 GKAEIIEELTEDVEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFS 181 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 + Q+ ++ +D E +V+ H+S LR K+ + + + R GY ++ Sbjct: 182 RDQLLDTVW-NYDYVGETRIVDVHVSHLRDKIEIDTKQPKYIKTIRGFGYKME 233 >gi|253682540|ref|ZP_04863337.1| transcriptional regulatory protein ResD [Clostridium botulinum D str. 1873] gi|253562252|gb|EES91704.1| transcriptional regulatory protein ResD [Clostridium botulinum D str. 1873] Length = 223 Score = 144 bits (363), Expect = 9e-33, Method: Composition-based stats. Identities = 41/226 (18%), Positives = 98/226 (43%), Gaps = 9/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D ++ F +G + + + D+ ++ + Sbjct: 3 ILIIEDEHRMRKLLKDYFKKEGFCVFEGEDGIKGLEVFKNNNIDIVILDIMI--PYLDGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117 ++ + IR S+VP+I ++ + L ++ G DD V KP + ++ A + Sbjct: 61 KVCKSIRDLSKVPIIMLTAKGEEEDKLFGYELGADDYVTKPFSPKVLVAKVKALLKRSVI 120 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 +K N +++ + ++ G+V L +E +L + + N+ +++ ++ + Sbjct: 121 DIKEEKNIINYNGLQINEPSNEVKINGKVITLSPKEYDLLLFFVKNKDIVLSRDKLLDRV 180 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 +G FD V++H+ +LR+KL++K + + R GY + N Sbjct: 181 WG-FDYDGGLRTVDTHVKRLREKLKDKSN--YIVTVRGKGYKFEVN 223 >gi|228985005|ref|ZP_04145173.1| Two-component response regulator vanR [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228774693|gb|EEM23091.1| Two-component response regulator vanR [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 247 Score = 144 bits (363), Expect = 9e-33, Method: Composition-based stats. Identities = 40/229 (17%), Positives = 86/229 (37%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + A +G + ++ E + ++ ++ ++ + Sbjct: 21 ILIVDDDQDIVRFVKANLMQEGFKVFSAHNGEESLEIINNNSIQLAILDIM--MPQMDGI 78 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARVA 113 EL R IR +P++ +S S + F +G DD + KP E Sbjct: 79 ELCRRIREKHSLPIMFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 138 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 ++V + + + R + GE L + E IL + A + + +I Sbjct: 139 FNQHAVQVIEKKINIRGLEIDEASRTVMLYGETINLTKTEYDILFLMAAAKNRVFTIEEI 198 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221 + +++ N V HI++LR K+ + + + +GY I+ Sbjct: 199 YESVWKEKAYE-SNNTVMVHIARLRNKIEEDPKEPKFIQNVWGVGYKIE 246 >gi|5353563|gb|AAD42180.1|AF130997_1 response regulator [Enterococcus faecium] gi|154267919|gb|ABS72054.1| response regulator [Ruminococcus gauvreauii] Length = 232 Score = 144 bits (363), Expect = 9e-33, Method: Composition-based stats. Identities = 41/232 (17%), Positives = 85/232 (36%), Gaps = 15/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +DG ++ F + + S D++ ++ L Sbjct: 5 ILVVDDEKELADLVEVYLKNDGYTVYKFYNGKDALKCIESVELDLAILDIML--PDVDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH----------HREILAR 111 ++ + IR P+I ++ S DD + KP + R Sbjct: 63 QICQKIREKFYFPVIMLTA-KVEDGDKIMGLSVADDYITKPFNPLEVVARVKAQLRQYMR 121 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + + + + + + G+ L E IL YL +G V+ Sbjct: 122 YKQPSLKQEAECTEYDIRGMTISKSSHKCILFGKEIQLTPTEFSILWYLCERQGTVVSTE 181 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 ++F A++G N V +HI +LR+K++ + + +GY+I+ Sbjct: 182 ELFEAVWGERFFD-SNNTVMAHIGRLREKMKEPSRNPKFIKTVWGVGYTIEK 232 >gi|258515194|ref|YP_003191416.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] gi|257778899|gb|ACV62793.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] Length = 236 Score = 144 bits (363), Expect = 9e-33, Method: Composition-based stats. Identities = 47/233 (20%), Positives = 89/233 (38%), Gaps = 12/233 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +++DD V + G + L S D+ ++ + G G + Sbjct: 4 ILVVDDEQNVLEIVRFNLERAGYKVITAKDGNIALELARSRNPDLIVLDLLMPGLDGYSI 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L + A ++P+I +S + + G DD + KP RE++ARV A RR K Sbjct: 64 CRLLQRDPATRRIPIIMLSARSDELDKVLGLEMGADDYITKPFSPRELVARVNARLRRDK 123 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEV--------FPLPRRERRILEYLMANRGKRVAKTQ 172 + G+ + + L +E +L +L GK ++ Sbjct: 124 KEEFIIPRDSKNIIMRGKLIIDKECMSIELGGKKQYLKAKEFELLYFLACQPGKYFSRYF 183 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI-DWN 223 + + FD + + V+ HI ++R+KL +++ R +GY + N Sbjct: 184 LLKQFW-EFDVSNDSRTVDVHIRRIRQKLEILNANQQYIETARGVGYRFIETN 235 >gi|169647646|gb|ACA61821.1| LRA-16 [uncultured bacterium BLR16] Length = 231 Score = 144 bits (363), Expect = 9e-33, Method: Composition-based stats. Identities = 50/224 (22%), Positives = 97/224 (43%), Gaps = 6/224 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + I G F S D+ ++ L G+ L Sbjct: 8 ILVVEDEQTIAQILIEYLQKSGFKTTHFPSGIGVVESVKIEAPDLILLDIKL--PGKNGL 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IRA S VP+ ++ L + G DD + KP RE++AR+ A++RR++ Sbjct: 66 EVCKEIRAFSTVPIFMVTAEIEEIDRLLGLELGADDYICKPFSPREVVARIKALFRRMQQ 125 Query: 122 SNNRAETGP-IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 T ++ + + + L E R+L+ L++N G+ +++Q+ Y Sbjct: 126 IGVPEPTRTGFQIDEAQQRISFKNQRLDLTPTEYRLLKLLVSNPGRVYSRSQLLDLCYQQ 185 Query: 181 FDEAVEENVVESHISKLRKKLRN--KLGFDPVDSKRFLGYSIDW 222 ++ V++SHI LRKK+ G + + + +GY + Sbjct: 186 EQLIID-RVIDSHIKNLRKKISTALPPGQEVIHAVYGIGYRFEV 228 >gi|289426029|ref|ZP_06427776.1| response regulator receiver domain protein [Propionibacterium acnes SK187] gi|289428042|ref|ZP_06429746.1| response regulator receiver domain protein [Propionibacterium acnes J165] gi|295131626|ref|YP_003582289.1| transcriptional regulatory protein, C-terminal domain protein [Propionibacterium acnes SK137] gi|289153572|gb|EFD02286.1| response regulator receiver domain protein [Propionibacterium acnes SK187] gi|289158925|gb|EFD07125.1| response regulator receiver domain protein [Propionibacterium acnes J165] gi|291376814|gb|ADE00669.1| transcriptional regulatory protein, C-terminal domain protein [Propionibacterium acnes SK137] gi|313763755|gb|EFS35119.1| response regulator receiver domain protein [Propionibacterium acnes HL013PA1] gi|313771771|gb|EFS37737.1| response regulator receiver domain protein [Propionibacterium acnes HL074PA1] gi|313793698|gb|EFS41729.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA1] gi|313803009|gb|EFS44217.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA2] gi|313808419|gb|EFS46886.1| response regulator receiver domain protein [Propionibacterium acnes HL087PA2] gi|313810594|gb|EFS48308.1| response regulator receiver domain protein [Propionibacterium acnes HL083PA1] gi|313816927|gb|EFS54641.1| response regulator receiver domain protein [Propionibacterium acnes HL059PA1] gi|313818159|gb|EFS55873.1| response regulator receiver domain protein [Propionibacterium acnes HL046PA2] gi|313821018|gb|EFS58732.1| response regulator receiver domain protein [Propionibacterium acnes HL036PA1] gi|313823910|gb|EFS61624.1| response regulator receiver domain protein [Propionibacterium acnes HL036PA2] gi|313827150|gb|EFS64864.1| response regulator receiver domain protein [Propionibacterium acnes HL063PA1] gi|313829729|gb|EFS67443.1| response regulator receiver domain protein [Propionibacterium acnes HL063PA2] gi|313831635|gb|EFS69349.1| response regulator receiver domain protein [Propionibacterium acnes HL007PA1] gi|313834789|gb|EFS72503.1| response regulator receiver domain protein [Propionibacterium acnes HL056PA1] gi|313839363|gb|EFS77077.1| response regulator receiver domain protein [Propionibacterium acnes HL086PA1] gi|314916486|gb|EFS80317.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA4] gi|314918851|gb|EFS82682.1| response regulator receiver domain protein [Propionibacterium acnes HL050PA1] gi|314921060|gb|EFS84891.1| response regulator receiver domain protein [Propionibacterium acnes HL050PA3] gi|314927043|gb|EFS90874.1| response regulator receiver domain protein [Propionibacterium acnes HL036PA3] gi|314932305|gb|EFS96136.1| response regulator receiver domain protein [Propionibacterium acnes HL067PA1] gi|314956579|gb|EFT00831.1| response regulator receiver domain protein [Propionibacterium acnes HL027PA1] gi|314959461|gb|EFT03563.1| response regulator receiver domain protein [Propionibacterium acnes HL002PA1] gi|314961863|gb|EFT05964.1| response regulator receiver domain protein [Propionibacterium acnes HL002PA2] gi|314964853|gb|EFT08953.1| response regulator receiver domain protein [Propionibacterium acnes HL082PA1] gi|314968642|gb|EFT12740.1| response regulator receiver domain protein [Propionibacterium acnes HL037PA1] gi|314974985|gb|EFT19080.1| response regulator receiver domain protein [Propionibacterium acnes HL053PA1] gi|314977919|gb|EFT22013.1| response regulator receiver domain protein [Propionibacterium acnes HL045PA1] gi|314979592|gb|EFT23686.1| response regulator receiver domain protein [Propionibacterium acnes HL072PA2] gi|314984673|gb|EFT28765.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA1] gi|314988327|gb|EFT32418.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA2] gi|314990417|gb|EFT34508.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA3] gi|315079185|gb|EFT51188.1| response regulator receiver domain protein [Propionibacterium acnes HL053PA2] gi|315082350|gb|EFT54326.1| response regulator receiver domain protein [Propionibacterium acnes HL078PA1] gi|315083677|gb|EFT55653.1| response regulator receiver domain protein [Propionibacterium acnes HL027PA2] gi|315087318|gb|EFT59294.1| response regulator receiver domain protein [Propionibacterium acnes HL002PA3] gi|315089735|gb|EFT61711.1| response regulator receiver domain protein [Propionibacterium acnes HL072PA1] gi|315095610|gb|EFT67586.1| response regulator receiver domain protein [Propionibacterium acnes HL038PA1] gi|315100230|gb|EFT72206.1| response regulator receiver domain protein [Propionibacterium acnes HL059PA2] gi|315102554|gb|EFT74530.1| response regulator receiver domain protein [Propionibacterium acnes HL046PA1] gi|315109528|gb|EFT81504.1| response regulator receiver domain protein [Propionibacterium acnes HL030PA2] gi|327326602|gb|EGE68390.1| DNA-binding response regulator PrrA [Propionibacterium acnes HL096PA3] gi|327332866|gb|EGE74598.1| DNA-binding response regulator PrrA [Propionibacterium acnes HL096PA2] gi|327335264|gb|EGE76974.1| DNA-binding response regulator PrrA [Propionibacterium acnes HL097PA1] gi|327447693|gb|EGE94347.1| response regulator receiver domain protein [Propionibacterium acnes HL043PA2] gi|327448568|gb|EGE95222.1| response regulator receiver domain protein [Propionibacterium acnes HL043PA1] gi|327449579|gb|EGE96233.1| response regulator receiver domain protein [Propionibacterium acnes HL013PA2] gi|327455879|gb|EGF02534.1| response regulator receiver domain protein [Propionibacterium acnes HL087PA3] gi|327456029|gb|EGF02684.1| response regulator receiver domain protein [Propionibacterium acnes HL092PA1] gi|327458031|gb|EGF04686.1| response regulator receiver domain protein [Propionibacterium acnes HL083PA2] gi|328757193|gb|EGF70809.1| response regulator receiver domain protein [Propionibacterium acnes HL087PA1] gi|328757384|gb|EGF71000.1| response regulator receiver domain protein [Propionibacterium acnes HL020PA1] gi|328757574|gb|EGF71190.1| response regulator receiver domain protein [Propionibacterium acnes HL025PA2] gi|328761991|gb|EGF75497.1| DNA-binding response regulator PrrA [Propionibacterium acnes HL099PA1] gi|332676492|gb|AEE73308.1| response regulator MprA [Propionibacterium acnes 266] Length = 232 Score = 144 bits (363), Expect = 9e-33, Method: Composition-based stats. Identities = 46/230 (20%), Positives = 91/230 (39%), Gaps = 11/230 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V++ G ++ S D ++ L Sbjct: 5 ILVVDDDRAVRESLARSLQYSGYEVDSAADGVEALAHLSGTHPDAVIMDVM--MPRLDGL 62 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E R++R++ P++ ++ ++ +D D+G DD + KP E+LAR+ A+ RR + Sbjct: 63 EATRMLRSNGNDVPILVLTARDAVDDRVDGLDAGADDYMVKPFALDELLARLRALTRRSR 122 Query: 121 VSNNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + E + R+ L R E +L + N K + + + Sbjct: 123 PEPEQNEAPEQLSFADLTLDPGTREITRGNRRISLTRTEFALLAVFLQNPEKVLERWWLL 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI-DWN 223 ++G FD N +E +I LR+K + + + R +GY + + N Sbjct: 183 HEVWG-FDFPTTANSLEVYIGYLRRKTEHDGEPRLIHTVRGVGYVLREAN 231 >gi|188534673|ref|YP_001908470.1| Response regulator in two-component regulatory system with PhoR [Erwinia tasmaniensis Et1/99] gi|188029715|emb|CAO97594.1| Response regulator in two-component regulatory system with PhoR [Erwinia tasmaniensis Et1/99] Length = 229 Score = 144 bits (363), Expect = 9e-33, Method: Composition-based stats. Identities = 38/222 (17%), Positives = 90/222 (40%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D A +++ + + + L D+ ++ L G G + Sbjct: 5 ILVVEDEAPIREMLCFVLEQNDYHPIEAADYDSAVSLLIEPWPDLILLDWMLPGGSGIQF 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ + +P++ ++ + + + G DD + KP +E++AR+ A+ RR+ Sbjct: 65 IKHLKREAMTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRRIS 124 Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 E + + + + E ++L + M + + ++ Q+ + ++ Sbjct: 125 PMAVEEVIEMQGLTLDPSSHRVMSATQPLEMGPTEYKLLHFFMTHPERVYSREQLLNHVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G + VE+ V+ HI +LRK L V + R GY Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALEVSGHDRMVQTVRGTGYRF 225 >gi|154684868|ref|YP_001420029.1| YclJ [Bacillus amyloliquefaciens FZB42] gi|154350719|gb|ABS72798.1| YclJ [Bacillus amyloliquefaciens FZB42] Length = 227 Score = 144 bits (363), Expect = 9e-33, Method: Composition-based stats. Identities = 48/229 (20%), Positives = 89/229 (38%), Gaps = 11/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D V F +G E + + D+ ++ L + Sbjct: 3 ILMIEDNISVCTMTEMFFFKEGFEAEFVHDGVEGYQRFTEEDWDLVILDIML--PSMDGV 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R IR S VP+I ++ + + F+ G DD V KP ++AR+ A+ RR + Sbjct: 61 TICRKIRETSSVPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARIKAVIRRYRA 120 Query: 122 SNN-------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + V L +E +L YL N + ++ Q+ Sbjct: 121 TGQAVKSDDLIETACFSINKKTREVFLHGKPVENLTPKEFDLLFYLAQNPRQVFSREQLL 180 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 ++G + +E V+ HI +LRKKL ++ + + +GY D + Sbjct: 181 EQVWG-YQFYGDERTVDVHIKRLRKKLSSE-EKPFLYTVWGVGYKFDED 227 >gi|17227625|ref|NP_484173.1| two-component response regulator [Nostoc sp. PCC 7120] gi|75907720|ref|YP_322016.1| two component transcriptional regulator [Anabaena variabilis ATCC 29413] gi|17135107|dbj|BAB77653.1| two-component response regulator [Nostoc sp. PCC 7120] gi|75701445|gb|ABA21121.1| two component transcriptional regulator, winged helix family [Anabaena variabilis ATCC 29413] Length = 247 Score = 144 bits (363), Expect = 9e-33, Method: Composition-based stats. Identities = 46/228 (20%), Positives = 92/228 (40%), Gaps = 9/228 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++IDD + + G + + L + D+ ++ L G V Sbjct: 4 ILVIDDDPAISELVAVNLEMAGYDVSQAEDGIKGQALALQLQPDLIMLDLMLPRVDGFTV 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R +++P++ ++ Q ++ F++G DD + KP E+LARV A+ RR Sbjct: 64 CQRLRRDERTAEIPVLMLTALSQTQDKVEGFNAGADDYLTKPFEVEEMLARVRALLRRTD 123 Query: 121 VSNNRAETGPIRVF------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 A+ I + + + G+ L E +L L+ G+ V+ ++I Sbjct: 124 RIPQAAKHSEILNYGPLTLVPERFEAIWFGQTVKLTHLEFELLHCLLQRHGQTVSPSEIL 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 ++G +D + + HI LR KL + + + GY ++ Sbjct: 184 REVWG-YDPDDDIETIRVHIRHLRTKLEPDPRHPRYIKTVYGAGYCLE 230 >gi|270160105|ref|ZP_06188761.1| transcriptional regulatory protein CpxR [Legionella longbeachae D-4968] gi|289165117|ref|YP_003455255.1| transcriptional regulatory protein CpxR [Legionella longbeachae NSW150] gi|269988444|gb|EEZ94699.1| transcriptional regulatory protein CpxR [Legionella longbeachae D-4968] gi|288858290|emb|CBJ12158.1| transcriptional regulatory protein CpxR [Legionella longbeachae NSW150] Length = 226 Score = 144 bits (363), Expect = 9e-33, Method: Composition-based stats. Identities = 48/224 (21%), Positives = 88/224 (39%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD + D +G + E + D ++ L Sbjct: 5 ILIIDDDTELTDLLSQYLEPEGYHAVCVHDGENGVKKALNQPFDAVILDVML--PKLNGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 E+ + IR H + P++ ++ + + G DD + KP + RE++AR+ ++ Sbjct: 63 EVLKSIREHLETPVLMLTARGDDIDRIVGLEIGADDYLPKPCNPRELVARLRAILRRTQK 122 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + S E I V R + G L E ILE L+ + G+ +K ++ Sbjct: 123 IPASKPIIEQHNIVVDCSKRHVTMAGHYLELTNAEFNILEMLIKSPGQAFSKEELTEYAL 182 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYSID 221 G + ++ HIS LR KL + +P+ + R GY + Sbjct: 183 GRK-YTAYDRSIDVHISNLRNKLGDNPQGEPIVKTVRGFGYMFN 225 >gi|325283717|ref|YP_004256258.1| two component transcriptional regulator, winged helix family [Deinococcus proteolyticus MRP] gi|324315526|gb|ADY26641.1| two component transcriptional regulator, winged helix family [Deinococcus proteolyticus MRP] Length = 225 Score = 144 bits (363), Expect = 9e-33, Method: Composition-based stats. Identities = 54/219 (24%), Positives = 92/219 (42%), Gaps = 5/219 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++I+D + G +G + + D+ ++ L LE Sbjct: 8 LVIEDEKEIARFIELELGAEGYTTDVAYDGVTGLSKFREVAPDLVVLDLML--PVLDGLE 65 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR S P+I ++ +Q ++ DSG DD + KP E+LARV A RR+ + Sbjct: 66 VARRIRKTSNTPIIILTAKDGIQDKVEGLDSGADDYLIKPFSIEELLARVRAHLRRVNPA 125 Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + DGR+ G L +E +LE L N GK ++ +I ++ Sbjct: 126 VTGEVRVADLVMNLDGREIFRGGRRVELSAKEFELLELLARNPGKVFSRFEIEEKVW--P 183 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + NVV+ +I LR+KL + + R +GY + Sbjct: 184 EYTGGSNVVDVYIGYLRRKLEEGGERRLIHTVRGVGYVL 222 >gi|311108366|ref|YP_003981219.1| response regulator 14 [Achromobacter xylosoxidans A8] gi|310763055|gb|ADP18504.1| response regulator 14 [Achromobacter xylosoxidans A8] Length = 220 Score = 144 bits (363), Expect = 9e-33, Method: Composition-based stats. Identities = 48/221 (21%), Positives = 100/221 (45%), Gaps = 9/221 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + G +++ +++ + DV ++ L L Sbjct: 3 ILVVEDEPTLATQLADALRQAGYTVDTAADGGTAQYMGAVETYDVVVLDLGL--PVMDGL 60 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119 + + RA Q +P++ ++ + + D+G DD + KP H E+LARV A + R Sbjct: 61 TVLKQWRAGGQGMPVLILTARDNWHEKVAGIDAGADDYLTKPFHMEELLARVRALLRRSS 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++ + GP+ + + V G+ L E ++L LM G+ ++++++ +Y Sbjct: 121 SHASAQWRCGPLMLDTRLAKVTVDGQALSLTSHEFKVLAVLMQRAGEVISRSELTEHVY- 179 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D + N ++ I +LRKKL D +++ R LGY + Sbjct: 180 AQDHDRDSNTIDVFIGRLRKKL----PPDTIETVRGLGYRL 216 >gi|306790486|ref|ZP_07428808.1| two component system transcriptional regulator mtrA [Mycobacterium tuberculosis SUMu004] gi|308333099|gb|EFP21950.1| two component system transcriptional regulator mtrA [Mycobacterium tuberculosis SUMu004] Length = 228 Score = 144 bits (363), Expect = 9e-33, Method: Composition-based stats. Identities = 43/220 (19%), Positives = 85/220 (38%), Gaps = 5/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A + + + +G R D+ ++ L G + Sbjct: 8 ILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDLML--PGMNGI 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R++RA S VP++ ++ + +SG DD + KP +E++ARV A RR Sbjct: 66 DVCRVLRADSGVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRRNDD 125 Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + GE L E +L L + + + ++G Sbjct: 126 EPAEMLSIADVEIDVPAHKVTRNGEQISLTPLEFDLLVALARKPRQVFTRDVLLEQVWG- 184 Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219 + + +V H+ +LR K+ + V + R +GY Sbjct: 185 YRHPADTRLVNVHVQRLRAKVEKDPENPTVVLTVRGVGYK 224 >gi|251778767|ref|ZP_04821687.1| regulatory protein VanR [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083082|gb|EES48972.1| regulatory protein VanR [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 237 Score = 144 bits (363), Expect = 9e-33, Method: Composition-based stats. Identities = 46/231 (19%), Positives = 95/231 (41%), Gaps = 15/231 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +++DD + + +G S+ +L+ + + ++ ++ L Sbjct: 5 ILIVDDEIEILKLLETVLKKEGFNSVYTAKTLKEGLAEFNRVKPELVILDIML--PDGDG 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI----- 115 E+ + IR+ S VP++ +S + F G DD + KP +E+ RV A Sbjct: 63 YEICKDIRSKSNVPILFLSAKTEELDKILGFAIGGDDYITKPFSPKEVAFRVKAHLRRVN 122 Query: 116 -----YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + GP + + G++ L +E +IL L N+ + ++K Sbjct: 123 YNNENLNENNTEEKIIKFGPYVLNESRAELIKNGKIIELTAKELKILSLLAHNQNQIISK 182 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220 +++ ++G D +N + HI KLR+K+ + + + R LGY + Sbjct: 183 EKLWDKVWGE-DYFGFDNTIMVHIRKLREKIEDDSSNPQYILTVRGLGYKL 232 >gi|229138610|ref|ZP_04267194.1| Two-component response regulator vanR [Bacillus cereus BDRD-ST26] gi|228644889|gb|EEL01137.1| Two-component response regulator vanR [Bacillus cereus BDRD-ST26] Length = 242 Score = 144 bits (363), Expect = 9e-33, Method: Composition-based stats. Identities = 38/229 (16%), Positives = 85/229 (37%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +G + ++ E + ++ ++ ++ + Sbjct: 16 ILIVDDDQDIVRFMNVNLIQEGFKVFSAHNGEEALEIINNNSIQLAILDIM--MPQMDGI 73 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR--------EILARVA 113 EL R IR +P++ +S S + F +G DD + KP ++ Sbjct: 74 ELCRRIREKHSLPIMFLSAKSSDVDKVVGFSTGADDYIVKPFSTIELIARVKAQLRRYTY 133 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 ++V + + + R + GE L + E IL + A + + +I Sbjct: 134 FNQNAVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYDILYLMAAAKNRVFTIEEI 193 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + +++ N V HI++LR K+ + + +GY I+ Sbjct: 194 YESVWKERAYE-SNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIE 241 >gi|118587242|ref|ZP_01544670.1| DNA-binding response regulator [Oenococcus oeni ATCC BAA-1163] gi|118432384|gb|EAV39122.1| DNA-binding response regulator [Oenococcus oeni ATCC BAA-1163] Length = 244 Score = 144 bits (363), Expect = 9e-33, Method: Composition-based stats. Identities = 50/229 (21%), Positives = 95/229 (41%), Gaps = 15/229 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + + +S D+ ++ L + Sbjct: 11 ILVVDDEKPISDVIKFNLQKEGYDVVTAFDGREALEVFASENPDLVLLDQML--PEIEGT 68 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 E+ R IR++S P+I ++ S + + G DD V KP +RE++ARV A RR Sbjct: 69 EVLRQIRSNSSTPVIIVTAKDSEIDKVVGLEMGADDYVTKPFSNRELVARVKANLRRQDA 128 Query: 120 ---------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 S + + + D G L RE +L YL G+ + + Sbjct: 129 TLPGVDASGDHSQKEIKVADLIIRPDAYTVTKNGIDLDLTHREFDLLHYLARRPGQVLTR 188 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGY 218 + + ++G FD + V+ + +LR+K+ + + + +KR +GY Sbjct: 189 EALLTEVWG-FDYFGDVRTVDVTVRRLREKVEDSPSRPEILMTKRGVGY 236 >gi|152974099|ref|YP_001373616.1| two component transcriptional regulator [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152022851|gb|ABS20621.1| two component transcriptional regulator, winged helix family [Bacillus cytotoxicus NVH 391-98] Length = 246 Score = 144 bits (363), Expect = 9e-33, Method: Composition-based stats. Identities = 41/230 (17%), Positives = 87/230 (37%), Gaps = 11/230 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++D ++G ++ + + + ++ + Sbjct: 19 ILVVDDEKEIRDLITIYLKNEGYNILQAGDGAEGLEILENNEVHLVVLDIM--MPKIDGI 76 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + +R ++P+I +S + +G DD V KP + E++ARV + RR Sbjct: 77 HMCMKVREQKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELVARVKSQLRRYMK 136 Query: 122 SNNRAETGPI-------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + ++ + V L RE ILE L+ N G + QI+ Sbjct: 137 MSGFMIENENEIEIGDIKINVSTHEVVVADREVKLTPREFSILELLVRNSGMVFSTEQIY 196 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223 ++ +N V HI K+R+K+ + + +GY ++ + Sbjct: 197 EKVWNERSFQ-SDNTVMVHIRKIREKVEENARKPRYIKTVWGVGYKVEKD 245 >gi|47565593|ref|ZP_00236634.1| response regulator DrrA [Bacillus cereus G9241] gi|47557583|gb|EAL15910.1| response regulator DrrA [Bacillus cereus G9241] Length = 232 Score = 144 bits (363), Expect = 9e-33, Method: Composition-based stats. Identities = 40/229 (17%), Positives = 84/229 (36%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +G + ++ E + + ++ ++ + Sbjct: 6 ILIVDDDQDIVRFMNVNLIQEGFKVFSAHNGEEALEIINKNCIQLAILDIM--MPQMDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARVA 113 EL R IR +P+I +S S + F +G DD + KP E Sbjct: 64 ELCRRIREKHSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 123 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 ++V + + + R + GE L + E IL + A + + +I Sbjct: 124 FNQHAVQVIEKKINIRGLEIDEASRTVMLYGETINLTKTEYDILFLMAAAKNRVFTIEEI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221 + +++ N V HI++LR K+ + + + +GY I+ Sbjct: 184 YESVWKERAYE-SNNTVMVHIARLRNKIEEDPKEPKFIQNVWGVGYKIE 231 >gi|330994125|ref|ZP_08318053.1| Transcriptional regulatory protein CusR [Gluconacetobacter sp. SXCC-1] gi|329758592|gb|EGG75108.1| Transcriptional regulatory protein CusR [Gluconacetobacter sp. SXCC-1] Length = 226 Score = 144 bits (363), Expect = 9e-33, Method: Composition-based stats. Identities = 48/223 (21%), Positives = 97/223 (43%), Gaps = 6/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D V++ + G +E ++ + ++ S + D+ ++ L G G + Sbjct: 3 ILVVEDDPTVRNFVAKGLKEAGHLVELTDNGKDGLFMAVSEKFDLIILDRMLPG-GIDGV 61 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYR 117 L IRA + P++ +S + + +G DD V KP E + + R Sbjct: 62 RLLETIRAQNNTTPVLLLSALADVDDRVQGLKAGGDDYVTKPFAFSELLARVEALGRRGR 121 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + E + + R G+ L RE R+LEYL + G+ V +T + + Sbjct: 122 TEAAPQTKLELADLEIDLLSRTVRRAGQKIDLQPREFRLLEYLTRHAGQVVTRTMLLEGV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + + NV++ H+S+LR+K+ G + + R GY + Sbjct: 182 WD-YHFDPQTNVIDVHVSRLRQKVDKPFGTPLIHTIRNAGYML 223 >gi|291442113|ref|ZP_06581503.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291345008|gb|EFE71964.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 228 Score = 144 bits (363), Expect = 9e-33, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 83/224 (37%), Gaps = 9/224 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D V+ G + + E R DV ++ L G L+ Sbjct: 5 LIVEDDLDVRRAVQLGLRHQGHEVFAVETGEEGLEQLLPFRPDVVVLDLML--PGMSGLD 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH------HREILARVAAIY 116 + R IR QVP+I ++ + ++G DD V KP+ + R Sbjct: 63 VCRRIRDRDQVPIIMVTARGDDVDVVVGLETGADDYVVKPVQARVLDARIRAVLRRQDAS 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 G + V G +GE L E R+L L A+ G+ ++ Q+ A Sbjct: 123 LPDGTRPRAETHGELVVDRAGLVVTHRGEPVALAPSELRLLLTLSASPGQVFSRQQLLEA 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ + +V++ + +LR KL V + R GY Sbjct: 183 VW-EHSYHGDIRLVDACVKRLRNKLGEGRNPRYVQTVRGFGYRF 225 >gi|257440003|ref|ZP_05615758.1| two-component response regulator [Faecalibacterium prausnitzii A2-165] gi|257197551|gb|EEU95835.1| two-component response regulator [Faecalibacterium prausnitzii A2-165] Length = 299 Score = 144 bits (363), Expect = 9e-33, Method: Composition-based stats. Identities = 48/225 (21%), Positives = 89/225 (39%), Gaps = 10/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ G E L S D+ ++ + Sbjct: 75 ILIVDDEPRIRELIREHLQYAGYVCEEAGDGSAALSLLSGGGFDLVILDVM--MPFMDGM 132 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 R +RA P+I ++ L + G DD V KP RE++ARV A+ R Sbjct: 133 TCLREMRARHINTPVIILTARGEEYDKLAGLEGGADDYVVKPFSPRELVARVKAVLNRTM 192 Query: 121 VSNN----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + G + + + V GE L +E +L +L +N+G +++ +I Sbjct: 193 PRSEASDGTMTFGELTIDTASHTVRVAGEDVSLTPKEFDLLVFLASNKGIALSREKILQK 252 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ +D E+ V++H+ LR L G + + +GY D Sbjct: 253 VW-NYDYFGEDRTVDTHVKMLRGHLGKCRG--YIATVWGIGYKFD 294 >gi|226941119|ref|YP_002796193.1| DNA-binding response regulator [Laribacter hongkongensis HLHK9] gi|226716046|gb|ACO75184.1| DNA-binding response regulator [Laribacter hongkongensis HLHK9] Length = 233 Score = 144 bits (363), Expect = 9e-33, Method: Composition-based stats. Identities = 45/229 (19%), Positives = 85/229 (37%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + ++D L G ++ L + D+ ++ + G L Sbjct: 4 ILVVDDDSDIRDVLGLLLQRHGFAVTCVADGVAALDLLARQHVDLLVLDVNMPGP--DGL 61 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPI---------HHREILAR 111 E+ R +R + V P++ +S + +G DD + KP + Sbjct: 62 EVCRQLRERAAVLPILFLSALGREADKVAGLMAGGDDYLVKPFSSAELVARITAQLRRVN 121 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 A + + G ++V D V G+ L RE R+L L + + Sbjct: 122 RFAPAAAVPDNPQCLRAGVLQVDLDTCRVRVAGQPVTLTEREFRLLALLARRPERVFSLE 181 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ + D V + + +HIS LR KL G V++ GY + Sbjct: 182 ELHQGAWDNHD-PVADKTIMAHISNLRHKLGAAGGAGLVETVWGFGYRL 229 >gi|225387530|ref|ZP_03757294.1| hypothetical protein CLOSTASPAR_01283 [Clostridium asparagiforme DSM 15981] gi|225046366|gb|EEG56612.1| hypothetical protein CLOSTASPAR_01283 [Clostridium asparagiforme DSM 15981] Length = 233 Score = 144 bits (363), Expect = 9e-33, Method: Composition-based stats. Identities = 52/224 (23%), Positives = 92/224 (41%), Gaps = 6/224 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 + DD +++ ++G + F + S D+ ++ G L Sbjct: 5 IYVADDELHIRNLIQTFLANEGYEVRTFADGDSLFQAFSERCPDLIILDIM--MPGTDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L IR S+VP++ +S S + G DD + KP E++ARV A++RR + Sbjct: 63 SLCARIRGESRVPIMIVSAKDSPLDRVTGITLGSDDYMVKPFLPLELVARVKALFRRAEY 122 Query: 122 SNNRAETGPIRVF----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 S A R V GE F + E L YL+ G+ V+K ++ I Sbjct: 123 SQTEAPAAFKCGNLLLEQGARTITVGGEAFSVTPTEFDFLSYLLERAGQAVSKQELMREI 182 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + L D ++ V + + +LR+KL+ V + G+ ++ Sbjct: 183 WKLPDYELDTRVADDLVKRLRRKLKEAGCSASVKTVWGFGFRLE 226 >gi|167772673|ref|ZP_02444726.1| hypothetical protein ANACOL_04054 [Anaerotruncus colihominis DSM 17241] gi|167665151|gb|EDS09281.1| hypothetical protein ANACOL_04054 [Anaerotruncus colihominis DSM 17241] Length = 228 Score = 144 bits (363), Expect = 9e-33, Method: Composition-based stats. Identities = 55/225 (24%), Positives = 93/225 (41%), Gaps = 11/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNS-LEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 LI+D +++ + G ++ GF +F + L + ++ L GE Sbjct: 7 IYLIEDDESIRELVLYALESAGYAVRGFADGGQFWQALAEGETPGLILLDIML--PGEDG 64 Query: 61 LELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAI 115 L + R ++A S P+I ++ + + D G DD V KP E+ R Sbjct: 65 LTILRRLKASARLSDTPVIMLTAKAAEYDKVRGLDLGADDYVTKPFGVMELLSRVRAVLR 124 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 R + G I + + R GE L +E +L YLM N +++ +I Sbjct: 125 RARPDAAAALCRCGGITLDAGRRVVTANGEAVTLTFKEFELLAYLMKNECIVLSREKIME 184 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G FD E V+ HI LR+KL + + + R +GY I Sbjct: 185 RVWG-FDYEGESRTVDMHIKSLRQKLGPCG--ELIRTVRGVGYKI 226 >gi|170783570|ref|YP_001740087.1| CheY-like response regulator [Arthrobacter sp. Chr15] gi|150035078|gb|ABR67074.1| CheY-like response regulator [Arthrobacter sp. Chr15] Length = 247 Score = 144 bits (363), Expect = 9e-33, Method: Composition-based stats. Identities = 45/220 (20%), Positives = 88/220 (40%), Gaps = 5/220 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + ++G +++ S D ++ L G E Sbjct: 20 LVVEDEPKMAGLLRRGLAEEGYAVDVAADSPAGLSAASGGGYDAVVLDVML--PGFPGFE 77 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-HREILARVAAIYRRLK 120 L R +R P++ ++ ++ + DSG DD + KP H + A R Sbjct: 78 LCRRLRERGIEVPVLMLTARDAVDDRVRGLDSGADDYLAKPFHLEELLARLRALTRRGPL 137 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 VS G +R+ S+G L +E +LE+ M G+ + + + + L Sbjct: 138 VSARGLVAGNLRLDSEGMRCWRGEAEVNLTAKEHALLEFFMEQPGRVLTREVLLENCWDL 197 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 NVV+ H+ LR+K+ + G +++ R +GY + Sbjct: 198 A-FEANSNVVDVHVRALREKIDRRFGVRSIETVRGVGYRL 236 >gi|46199662|ref|YP_005329.1| transcriptional regulatory protein [Thermus thermophilus HB27] gi|55981691|ref|YP_144988.1| putative response regulator [Thermus thermophilus HB8] gi|46197288|gb|AAS81702.1| transcriptional regulatory protein [Thermus thermophilus HB27] gi|55773104|dbj|BAD71545.1| putative response regulator [Thermus thermophilus HB8] Length = 225 Score = 144 bits (363), Expect = 9e-33, Method: Composition-based stats. Identities = 48/220 (21%), Positives = 88/220 (40%), Gaps = 8/220 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L+DD + + A G + E L + L+ LE Sbjct: 4 LLVDDDPAILEVLGAFLRGAGFEVLEAEDGEKALELF----PQADLVILDLMLPKVGGLE 59 Query: 63 LPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R+I + ++PL+ ++ + + + G DD V KP RE+ R Sbjct: 60 VARLIRQERPELPLLILTAKGEEEDRVLGLELGADDYVVKPFSPREV-VARVKALLRRAG 118 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 GP+R+ R+ + G+ PL R E +L L + G ++ ++ ++G Sbjct: 119 LREELVYGPLRLLPTRREAYLAGKPLPLSRLEFDLLLTLAQHPGVVFSRERLLERVWG-P 177 Query: 182 DEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 + VV+ HI+ LRKKL + +++ R +GY Sbjct: 178 GFPGVDRVVDVHIAALRKKLGDDPENPRFIETVRGVGYRF 217 >gi|323356976|ref|YP_004223372.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Microbacterium testaceum StLB037] gi|323273347|dbj|BAJ73492.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Microbacterium testaceum StLB037] Length = 226 Score = 144 bits (363), Expect = 9e-33, Method: Composition-based stats. Identities = 39/220 (17%), Positives = 84/220 (38%), Gaps = 5/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + +G + R D+ ++ L G + Sbjct: 5 ILVVDDDTALAEMIGIVLRTEGFDTVFCADGAQAVDAWRTERPDLILLDLML--PGVDGI 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ +RA S VP+I ++ + +SG DD + KP + +E++AR+ R ++V Sbjct: 63 EICTRVRAESGVPIIMLTARTDTADVVKGLESGADDYIMKPFNPKELVARIRTRLRPVQV 122 Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + V + L E +L L + ++ + ++G Sbjct: 123 PVDETLRIGDLVVDVAAHEVRRGDNPIALTPLEFELLVALAEKPQQVFSREMLLEQVWG- 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVD-SKRFLGYS 219 + + +V H+ +LR K+ + + R +GY Sbjct: 182 YHYKADTRLVNVHVQRLRAKIEADPDNPRIVTTVRGVGYR 221 >gi|229156833|ref|ZP_04284920.1| DNA-binding response regulator [Bacillus cereus ATCC 4342] gi|228626753|gb|EEK83493.1| DNA-binding response regulator [Bacillus cereus ATCC 4342] Length = 225 Score = 144 bits (363), Expect = 9e-33, Method: Composition-based stats. Identities = 42/221 (19%), Positives = 94/221 (42%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L DD +++ +G ++ + + + ++ ++ Sbjct: 6 ILLADDDKHIRELLHYHLQKEGFTVFEAEDGKVAQEVLEKENIHLAIVDIM--MPFVDGY 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L IR + +P+I ++ L F SG DD + KP E++ R+ A+ RR ++ Sbjct: 64 TLCEEIRKYHDIPVILLTAKDQLVDKERGFISGTDDYIVKPFEPAEVIFRMKALLRRYQM 123 Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + T + G + + G+ LP +E +L L + G+ ++ ++ ++G+ Sbjct: 124 LSADIITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM 183 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D +E V+ H+ +LR + + + + R LGY ++ Sbjct: 184 -DFEGDERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 223 >gi|237808813|ref|YP_002893253.1| two component transcriptional regulator PhoB, winged helix family [Tolumonas auensis DSM 9187] gi|237501074|gb|ACQ93667.1| two component transcriptional regulator PhoB, winged helix family [Tolumonas auensis DSM 9187] Length = 229 Score = 144 bits (363), Expect = 9e-33, Method: Composition-based stats. Identities = 37/221 (16%), Positives = 87/221 (39%), Gaps = 4/221 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61 ++++D A +++ + G L ++ ++ + G G + + Sbjct: 6 LVVEDEAPIREMLCFMLEQKGYEPVEAADFTEAVALVKEPYPELILLDWMIPGGSGIQFI 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 +L + +P++ ++ + + + G DD + KP +E+ AR+ A+ RR Sbjct: 66 KLMKQEELTRNIPIVMLTARGEEEDKVRGLEVGADDYITKPFSPKELTARIKAVMRRSAP 125 Query: 122 SNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + R+ + E R+L + M + + ++ Q+ + ++G Sbjct: 126 TATEEVIDVQGLRLDPVSHRVTANDLPLDMGPTEFRLLHFFMTHPERVYSREQLLNNVWG 185 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + VE+ V+ HI +LRK + + + R GY Sbjct: 186 T-NVYVEDRTVDVHIRRLRKAMAVTGHDVLIQTVRGSGYRF 225 >gi|183981321|ref|YP_001849612.1| two-component sensory transduction transcriptional regulatory protein MtrA [Mycobacterium marinum M] gi|183174647|gb|ACC39757.1| two-component sensory transduction transcriptional regulatory protein MtrA [Mycobacterium marinum M] Length = 225 Score = 144 bits (363), Expect = 9e-33, Method: Composition-based stats. Identities = 43/220 (19%), Positives = 85/220 (38%), Gaps = 5/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A + + + +G R D+ ++ L G + Sbjct: 5 ILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDLML--PGMNGI 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R++RA S VP++ ++ + +SG DD + KP +E++ARV A RR Sbjct: 63 DVCRVLRADSGVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRRNDD 122 Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + GE L E +L L + + + ++G Sbjct: 123 EPAEMLSIADVDIDVPAHKVTRNGEQISLTPLEFDLLVALARKPRQVFTRDVLLEQVWG- 181 Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219 + + +V H+ +LR K+ + V + R +GY Sbjct: 182 YRHPADTRLVNVHVQRLRAKVEKDPENPTVVLTVRGVGYK 221 >gi|47564389|ref|ZP_00235434.1| DNA-binding response regulator [Bacillus cereus G9241] gi|47558541|gb|EAL16864.1| DNA-binding response regulator [Bacillus cereus G9241] Length = 225 Score = 144 bits (363), Expect = 9e-33, Method: Composition-based stats. Identities = 42/221 (19%), Positives = 94/221 (42%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L DD +++ +G ++ + + + ++ ++ Sbjct: 6 ILLADDDKHIRELLHYHLQKEGFTVFEAEDGKVAQDVLEKENIHLAIVDIM--MPFIDGY 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L IR + +P+I ++ L F SG DD + KP E++ R+ A+ RR ++ Sbjct: 64 TLCEEIRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQM 123 Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + T + G + + G+ LP +E +L L + G+ ++ ++ ++G+ Sbjct: 124 LSADIITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM 183 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D +E V+ H+ +LR + + + + R LGY ++ Sbjct: 184 -DFEGDERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 223 >gi|329946264|ref|ZP_08293858.1| sensory transduction protein RegX3 [Actinomyces sp. oral taxon 170 str. F0386] gi|328527556|gb|EGF54551.1| sensory transduction protein RegX3 [Actinomyces sp. oral taxon 170 str. F0386] Length = 254 Score = 144 bits (363), Expect = 9e-33, Method: Composition-based stats. Identities = 54/232 (23%), Positives = 102/232 (43%), Gaps = 15/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-------EDVSAIEAFLI 54 +L++D +D DG + + + ++R D+ ++ L Sbjct: 21 ILLVEDEENFRDPLAFSLRRDGFEVIEAEDGQRAVEIFETSRRPGGVGPIDLVLLDLML- 79 Query: 55 GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA 114 E+ IR S VP+I +S + + + G DD V KP +RE+LAR+ A Sbjct: 80 -PRLDGTEVCTRIRRSSSVPVIMLSAKDTELDKIVGLEIGADDYVTKPYSYRELLARLKA 138 Query: 115 IYRRLKVSNNRAETG----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + RR +V + E +R+ + + V GE +P RE +LE + + G+ + + Sbjct: 139 VLRRSRVVPDEPEQVLAAGRVRMDVERHEVLVDGEAVAMPLREFELLELFLRHPGRVLTR 198 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 QI ++G D + ++ H+ +LR ++ + + + R LGY +D Sbjct: 199 GQIIERLWG-PDYEGDTKTLDVHVKRLRGRIEADASKPVLITTVRGLGYRLD 249 >gi|302534786|ref|ZP_07287128.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. C] gi|302443681|gb|EFL15497.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. C] Length = 229 Score = 144 bits (363), Expect = 9e-33, Method: Composition-based stats. Identities = 44/219 (20%), Positives = 91/219 (41%), Gaps = 5/219 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + + +G + A+ D+ ++ L G +E Sbjct: 10 LVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLML--PGRDGIE 67 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLKV 121 + R+IRA S VP++ ++ + +SG DD + KP +E++AR+ A R + Sbjct: 68 VCRLIRAESGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEEP 127 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + G + + G + G L E +L L + + + ++G + Sbjct: 128 APEQLVIGDLVIDVAGHSVKRDGASIALTPLEFDLLVALARKPWQVFTREVLLEQVWG-Y 186 Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219 A + +V H+ +LR K+ + V + R +GY Sbjct: 187 RHAADTRLVNVHVQRLRSKVEKDPERPEIVVTVRGVGYK 225 >gi|295098193|emb|CBK87283.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 240 Score = 144 bits (363), Expect = 9e-33, Method: Composition-based stats. Identities = 49/224 (21%), Positives = 88/224 (39%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + I + + + D+ ++ L G L Sbjct: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLML--PGTDGL 70 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R IR S VP++ ++ L + G DD + KP RE++ARV I RR K Sbjct: 71 TLCREIRRFSDVPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 Query: 122 SNNRAE---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 P+ V + ++ L E R+L+ L GK ++ Q+ + +Y Sbjct: 131 QRELQVLDAQSPLIVDESRFQASWRSKLLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190 Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + V + ++SHI LR+KL + + +GY + Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLEALDADQSFIRAVYGVGYRWE 233 >gi|167765588|ref|ZP_02437652.1| hypothetical protein CLOSS21_00082 [Clostridium sp. SS2/1] gi|167712773|gb|EDS23352.1| hypothetical protein CLOSS21_00082 [Clostridium sp. SS2/1] Length = 226 Score = 144 bits (363), Expect = 9e-33, Method: Composition-based stats. Identities = 49/222 (22%), Positives = 102/222 (45%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + ++ G + E S + ++ + ++ Sbjct: 6 ILVVDDESRMRKLVKDFLTRAGYQVLEAQDGEEAVDTFYSIK-GINLLVLDVMMPKMDGW 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120 E+ + IR S+VP+I ++ Q L F+ GVD+ ++KP + ++ARV AI R ++ Sbjct: 65 EVVKEIRKVSKVPIIMLTAKDQEQDELLGFELGVDEYISKPFSPKILVARVEAILRRTVQ 124 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + E G I + G + G+ L +E +L+Y M+N+G+ + + I + ++ Sbjct: 125 TEGEQIEAGGIVMDVGGHHVSIDGKSINLSYKEFELLQYFMSNQGRALTRESILNQVW-N 183 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D + +++H+ KLR KL K + + +GY + Sbjct: 184 YDYFGDARTIDTHVKKLRNKLGEKGS--YIHTIWGMGYKFEV 223 >gi|89889436|ref|ZP_01200947.1| transcriptional regulatory protein [Flavobacteria bacterium BBFL7] gi|89517709|gb|EAS20365.1| transcriptional regulatory protein [Flavobacteria bacterium BBFL7] Length = 228 Score = 144 bits (363), Expect = 9e-33, Method: Composition-based stats. Identities = 43/223 (19%), Positives = 88/223 (39%), Gaps = 10/223 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 +L+DD + + ++G + + + + D+ ++ + G + Sbjct: 8 ILLVDDEPDILEIVSYNLKNEGYQVFTAENGKEGVQKAKKKKPDLIILDVMMPVMDGIEA 67 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIY 116 E R I Q + ++ + + FD+G DD + KPI R ++ + + Sbjct: 68 CEQIRKIPELDQTIITFLTARGEDYSMIAGFDAGADDYIAKPIKPRVLVSKVKSLLRRNV 127 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 N + G + + D + E LPR+E +L L + GK + +I Sbjct: 128 LPKGDEGNVVKIGDLIIDKDQYKIVFKKEEIILPRKEFELLSLLTSKPGKVFKREEILDV 187 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 ++G + V ++ HI KLR+KL + + + +GY Sbjct: 188 VWGN-EVIVGGRTIDVHIRKLREKLGDDS----FKTVKGVGYK 225 >gi|6862582|gb|AAD30120.2| DNA binding response regulator RpaA [Tolypothrix sp. PCC 7601] Length = 247 Score = 144 bits (363), Expect = 9e-33, Method: Composition-based stats. Identities = 46/228 (20%), Positives = 91/228 (39%), Gaps = 9/228 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++IDD + + G + + L + D+ ++ L G V Sbjct: 4 ILVIDDDPAISELVAVNLEMAGYDVSQAEDGIKGQALALQLQPDLIMLDLMLPRVDGFTV 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R +++P++ ++ Q ++ F++G DD + KP E+LARV A+ RR Sbjct: 64 CQRLRRDERTAEIPVLMLTALSQTQDKVEGFNAGADDYLTKPFEVEEMLARVRALLRRTD 123 Query: 121 VSNNRAETGPIRVF------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 A+ I + + + E L E +L L+ G+ V+ ++I Sbjct: 124 RIPQAAKHSEILNYGPLTLVPERFEAIWFHETVKLTHLEFELLHCLLQRHGQTVSPSEIL 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 ++G +D + + HI LR KL + + + GY ++ Sbjct: 184 REVWG-YDPDDDIETIRVHIRHLRTKLEPDPRHPRYIKTVYGAGYCLE 230 >gi|300854762|ref|YP_003779746.1| putative two-component response regulator [Clostridium ljungdahlii DSM 13528] gi|300434877|gb|ADK14644.1| predicted two-component response regulator [Clostridium ljungdahlii DSM 13528] Length = 226 Score = 144 bits (363), Expect = 9e-33, Method: Composition-based stats. Identities = 44/224 (19%), Positives = 94/224 (41%), Gaps = 5/224 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + +G ++ D+ ++ + + Sbjct: 6 ILLVEDEKQMSMFIQMELTHEGYKIDAAYDGREALEKVEDKEYDLILLDIMI--PNLNGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119 E+ R IR S VP+I ++ + + D+G +D ++KP E+ RV + L Sbjct: 64 EVCRRIRQFSHVPIIMLTAKSDIPDKVLGLDAGANDYLSKPFAIEELLARIRVYERDKAL 123 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 K ++ + I + + G+ L + E +L+ L+ N+ + + ++ ++G Sbjct: 124 KNQTDQIKVKNIVMDNKTHQVLRDGKEIELTKTEYNLLKMLLINKNIVLTRDKLIEEVWG 183 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 +D + + NVV+ I LR K+ N+ + + R +GY I N Sbjct: 184 -YDYSGDTNVVDVFIRYLRSKIDNERQDKLITTIRGVGYVIKDN 226 >gi|269794263|ref|YP_003313718.1| CheY-like receiver domain/winged-helix DNA-binding domain-containing response regulator [Sanguibacter keddieii DSM 10542] gi|269096448|gb|ACZ20884.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Sanguibacter keddieii DSM 10542] Length = 223 Score = 144 bits (363), Expect = 9e-33, Method: Composition-based stats. Identities = 45/219 (20%), Positives = 89/219 (40%), Gaps = 5/219 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + + +G + + S D+ ++ L G+ E Sbjct: 2 LVVDDDTALAEMIGLVLKTEGFDPVFCADGDAAIGIFRSTSPDLVLLDVML--PGKDGTE 59 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IRA S VP+I ++ + +SG DD ++KP +E++AR+ A RR Sbjct: 60 VCRQIRAESGVPVIMLTAKSDTVDVVQGLESGADDYISKPFKPKELVARIRARLRRTDEP 119 Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + G G L E +L L + ++ + ++G + Sbjct: 120 APERLSIGDLEIDVTGHRVTRAGAAISLTPLEFDLLVALARKPWQVFSREVLLEKVWG-Y 178 Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219 A + +V H+ +LR K+ + + V + R +GY Sbjct: 179 RHAADTRLVNVHVQRLRSKIEHDPEVPEIVLTVRGVGYK 217 >gi|165868373|ref|ZP_02213033.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|164715099|gb|EDR20616.1| DNA-binding response regulator [Bacillus anthracis str. A0488] Length = 223 Score = 144 bits (363), Expect = 9e-33, Method: Composition-based stats. Identities = 42/221 (19%), Positives = 93/221 (42%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L DD +++ +G + + + + ++ ++ Sbjct: 4 ILLADDDKHIRELLHYHLQKEGFKVFEAEDGKVAQEVLEKENIHLAIVDIM--MPFVDGY 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L IR + +P+I ++ L F SG DD + KP E++ R+ A+ RR ++ Sbjct: 62 TLCEEIRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQM 121 Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + T + G + + G+ LP +E +L L + G+ ++ ++ ++G+ Sbjct: 122 LSADIITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D +E V+ H+ +LR + + + + R LGY ++ Sbjct: 182 -DFEGDERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 221 >gi|29336923|sp|Q9CCJ2|MTRA_MYCLE RecName: Full=DNA-binding response regulator mtrA Length = 225 Score = 144 bits (363), Expect = 9e-33, Method: Composition-based stats. Identities = 43/220 (19%), Positives = 85/220 (38%), Gaps = 5/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A + + + +G R D+ ++ L G + Sbjct: 5 ILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDLML--PGMNGI 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R++RA S VP++ ++ + +SG DD + KP +E++ARV A RR Sbjct: 63 DVCRVLRADSGVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRRNDD 122 Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + GE L E +L L + + + ++G Sbjct: 123 EPAEMLSIADVDIDVPAHKVTRNGEHISLTPLEFDLLVALARKPRQVFTRDVLLEQVWG- 181 Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219 + + +V H+ +LR K+ + V + R +GY Sbjct: 182 YRHPADTRLVNVHVQRLRAKVEKDPENPTVVLTVRGVGYK 221 >gi|325684430|gb|EGD26596.1| DNA-binding response regulator [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 241 Score = 144 bits (363), Expect = 9e-33, Method: Composition-based stats. Identities = 41/235 (17%), Positives = 77/235 (32%), Gaps = 17/235 (7%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D V F +G E + + D I L + + Sbjct: 3 ILMVEDDKSVSQMMELFFKKEGWEQVSAYDGEEAVEIFQTHPRDFDIITLDLNLPKKDGI 62 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNK--------------PIHHR 106 ++ + IR S+ P+I ++ S + G DD V K Sbjct: 63 QVAKEIRRISETVPIIMVTARDSESDQVLGLGVGADDYVTKPFSPIALIARIKALHRRVM 122 Query: 107 EILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166 + S + V L +E +L + + Sbjct: 123 LEGQPRDLPKNIPSNDFDLETNHIRISKSRREVYFDENRVEGLTPKEFDLLYTMAQKPKQ 182 Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ Q+ ++G ++ EE V++HI KLR+KL K G + + +GY D Sbjct: 183 VFSREQLLELVWG-YEYFGEERTVDAHIKKLRQKLE-KSGPQIIQTVWGVGYKFD 235 >gi|162453154|ref|YP_001615521.1| two-component response regulator [Sorangium cellulosum 'So ce 56'] gi|161163736|emb|CAN95041.1| two-component response regulator [Sorangium cellulosum 'So ce 56'] Length = 234 Score = 144 bits (363), Expect = 9e-33, Method: Composition-based stats. Identities = 50/231 (21%), Positives = 99/231 (42%), Gaps = 16/231 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A +++ + +G ++ + D+ ++ L L Sbjct: 5 ILVVDDEARIREVLLYALQKEGYAVTAVADGRAAVEAAGAGTVDLVVLDVML--PELDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +RA S+ P++ +S + + G DD + KP RE++ARV A+ RR + Sbjct: 63 EVCRRLRAGSRTPILFLSARADEVDRIVGLELGGDDYLTKPFSPRELVARVRALLRRTEA 122 Query: 122 SNNRA------------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 GPI V ++ + G+ L E +L L+ G ++ Sbjct: 123 PPPAPAPASTGARAAVLRHGPIEVDTERHEARYLGQPVSLTATELGVLGALLERPGVVLS 182 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + Q+ Y +D + E +++H+ ++R K R G DP+ + +GY + Sbjct: 183 RGQLMQRAY-RYDNLITERTIDTHVRRIRAKFRVVGG-DPIATVHGVGYKL 231 >gi|111027030|ref|YP_709008.1| response regulator, two-component system [Rhodococcus jostii RHA1] gi|110825569|gb|ABH00850.1| response regulator, two-component system [Rhodococcus jostii RHA1] Length = 252 Score = 144 bits (363), Expect = 9e-33, Method: Composition-based stats. Identities = 49/232 (21%), Positives = 94/232 (40%), Gaps = 17/232 (7%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + + + + L DV ++ L G +E Sbjct: 20 LVVDDERPLAAVVASYLEREHFEVAVAYNGVDALALAREIDPDVVVLDLGL--PGMDGIE 77 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +R S ++ ++ + T+ G DD V KP RE++AR+ A+ RR + + Sbjct: 78 VCRQLRTFSDAYVVMLTARSAEVDTIIGLSVGADDYVTKPFSPRELVARIRAMLRRPRKA 137 Query: 123 NNRAETGPIR-------------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 P R + GR+ + + L R E +L L + G + Sbjct: 138 PVYETPSPDRGGEEAPRVFGALSIDVAGREVCLGEQPVMLTRTEFDVLAVLSSRPGMAFS 197 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 + Q+ A++G E++V+ H+ LR+KL + V + R +GY + Sbjct: 198 RRQLIEAVWGES-WVGNEHLVDVHVGHLRRKLGDDPAAPRYVTTVRGIGYRM 248 >gi|331700970|ref|YP_004397929.1| winged helix family two component transcriptional regulator [Lactobacillus buchneri NRRL B-30929] gi|329128313|gb|AEB72866.1| two component transcriptional regulator, winged helix family [Lactobacillus buchneri NRRL B-30929] Length = 229 Score = 144 bits (363), Expect = 9e-33, Method: Composition-based stats. Identities = 44/227 (19%), Positives = 88/227 (38%), Gaps = 9/227 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + ++G S + + D+ + ++ G + Sbjct: 3 ILVVDDDKEIAQLLEIYIRNEGYEPVSAYSGQEALTRLRTES-DIGLMILDIMMPGMNGI 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + +R SQ+P+I +S + SG DD V KP + E++ARV ++ RR + Sbjct: 62 EVVKEVRKDSQIPIIILSAKTEDMDKIQGLISGADDYVTKPFNPLEVMARVKSLLRRTEE 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQG------EVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + + + L E IL L ++ + + +IF Sbjct: 122 HVTNDTPDVLDIGPLTINKDSHEVKTITGTPIQLTALEFGILYLLASHPNRVFSADEIFE 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 ++ + V V H+S LR K+ G + + +GY I+ Sbjct: 182 RVW-RQESIVSAKTVMVHVSHLRDKIEEATNGEKVIQTVWGVGYKIE 227 >gi|295705391|ref|YP_003598466.1| two-component response regulator [Bacillus megaterium DSM 319] gi|294803050|gb|ADF40116.1| two-component response regulator [Bacillus megaterium DSM 319] Length = 224 Score = 144 bits (363), Expect = 9e-33, Method: Composition-based stats. Identities = 44/222 (19%), Positives = 94/222 (42%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L DD ++ +G + E L + ++ ++ + K Sbjct: 4 ILLADDDEHMRQLVRHYLQLEGYVVHEAKDGEEASGLLAKQHIHLAVVDIMMPHK--DGY 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ IR++ P+I ++ L+ F +G DD V KP +E++ R+ A+ RR +V Sbjct: 62 EVCEEIRSYYDFPIILLTAKDQLEDKEKGFLAGTDDYVTKPFEPKELIFRIKALLRRYEV 121 Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 N + + + G + LP +E +L L + G+ + ++ I+G Sbjct: 122 VNEKMIVLNNTSIDRKSYEVHCSGRLLILPMKEFELLAQLASYPGRIFTREELIHLIWGA 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 D + ++ H+ +LR++ + F + + R +GY ++ Sbjct: 182 -DFNGDNRTIDVHVKRLRERFEHTDDF-VITTVRGVGYKLEV 221 >gi|229134079|ref|ZP_04262899.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196] gi|228649414|gb|EEL05429.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196] Length = 225 Score = 144 bits (363), Expect = 9e-33, Method: Composition-based stats. Identities = 41/221 (18%), Positives = 93/221 (42%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L DD +++ +G + + + + ++ ++ Sbjct: 6 ILLADDDKHIRELLHYHLQKEGFKVFEAEDGKVAQGVLEKENIHLAIVDIM--MPFVDGY 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L IR + +P+I ++ L F SG DD + KP E++ R+ A+ RR ++ Sbjct: 64 TLCEEIRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQM 123 Query: 122 -SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + + G + + G+ LP +E +L L + G+ ++ ++ ++G+ Sbjct: 124 LNADIITLHGTTIDRKGFEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM 183 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D +E V+ H+ +LR + + + + R LGY ++ Sbjct: 184 -DFEGDERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 223 >gi|187934770|ref|YP_001885970.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B] gi|187722923|gb|ACD24144.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B] Length = 237 Score = 144 bits (363), Expect = 9e-33, Method: Composition-based stats. Identities = 45/231 (19%), Positives = 95/231 (41%), Gaps = 15/231 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +++DD + + +G + + +L+ + + ++ ++ L Sbjct: 5 ILIVDDEIEILKLLETVLKKEGFNNVYTAKTLKEGLAEFNRVKPELVILDIML--PDGDG 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI----- 115 E+ + IR+ S VP++ +S + F G DD + KP +E+ RV A Sbjct: 63 YEICKDIRSKSNVPILFLSAKTEELDKILGFAIGGDDYITKPFSPKEVAFRVKAHLRRVN 122 Query: 116 -----YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + GP + + G++ L +E +IL L N+ + ++K Sbjct: 123 YNNENLNENNTEEKIIKFGPYVLNESRAELIKNGKIIELTAKELKILSLLAHNQNQIISK 182 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220 +++ ++G D +N + HI KLR+K+ + + + R LGY + Sbjct: 183 EKLWDKVWGE-DYFGFDNTIMVHIRKLREKIEDDSSNPKYILTVRGLGYKL 232 >gi|320355415|ref|YP_004196754.1| winged helix family two component transcriptional regulator [Desulfobulbus propionicus DSM 2032] gi|320123917|gb|ADW19463.1| two component transcriptional regulator, winged helix family [Desulfobulbus propionicus DSM 2032] Length = 231 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 46/227 (20%), Positives = 83/227 (36%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++++D A ++ G ++ +S E L + D ++ L G G +V Sbjct: 6 ILVVEDDADIQQLVSYNLIKAGFNVTCADSGEEALQLLAREPIDAMVLDLMLPGKDGNEV 65 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVA 113 R A +P+I ++ + + G DD V KP R ++ R Sbjct: 66 CRAVRGQEAIKGLPIIMLTAKSEEDDIVSGLECGADDYVTKPFSPRVLIARLEAALRRTP 125 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + + V G+ L E IL L G ++ QI Sbjct: 126 EPVVDADEQAGFISRHGMDIHPGRHEVRVDGQEIHLTASEFTILALLAGRPGWVFSRQQI 185 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + G +D ++ V+ I LRKKL + +++ R +GY I Sbjct: 186 IDQVRG-YDYSITPRAVDVQIFGLRKKLGSAG--TCIETVRGIGYRI 229 >gi|300717533|ref|YP_003742336.1| two-component system response regulator [Erwinia billingiae Eb661] gi|299063369|emb|CAX60489.1| Two-component system response regulator [Erwinia billingiae Eb661] Length = 235 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 43/223 (19%), Positives = 86/223 (38%), Gaps = 5/223 (2%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + ++++D + + + D+ ++ L G Sbjct: 9 LILVVEDEPKLGQLMVDYLQAANYRTHHLLRGDEVLDWVKQTPPDMILLDLML--PGMDG 66 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L + R IR S +P++ ++ L + G DD + KP RE++ARV I +R K Sbjct: 67 LTVCREIRRFSDLPIMMVTAKTEEIDRLLGLEIGADDYICKPFSPREVVARVKTILKRCK 126 Query: 121 VSNNRAETGP-IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + A+ + + + L E R+L+ L GK ++ + + +Y Sbjct: 127 RTPEEAQKASLLVIDENRFQASWDQGPLDLTPAEFRLLKTLAQEPGKVFSREMLLNHLYD 186 Query: 180 LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 + V + ++SHI LR+KL + + +GY + Sbjct: 187 DY-RVVTDRTIDSHIKNLRRKLELLDSDQPFIRAVYGMGYRWE 228 >gi|289704826|ref|ZP_06501244.1| response regulator receiver domain protein [Micrococcus luteus SK58] gi|289558442|gb|EFD51715.1| response regulator receiver domain protein [Micrococcus luteus SK58] Length = 276 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 48/222 (21%), Positives = 92/222 (41%), Gaps = 8/222 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + G + ++ DV ++ L G +E Sbjct: 56 LVVDDEKPLARMVATYLERAGYEVALTHTGPAAVQAARVHEPDVMVLDLGL--PGLDGIE 113 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +RA S+ ++ ++ L+ G DD + KP RE++ARV A+ RR + + Sbjct: 114 VCRRVRAFSECYVLMLTARGDEHHRLEGLAVGADDYITKPFSVRELVARVGAVMRRPRTT 173 Query: 123 NNRAETGPIR----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + E + + + V G+V L R E +L L + ++ Q+ ++ Sbjct: 174 VSAPEPERVCGDLVIDLAAHEARVSGQVVQLTRTEFDLLAALSGRPHQAFSRRQLIDIVW 233 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +E +V+ HI LR+KL +D+ R +GY + Sbjct: 234 D-PAWVGDERLVDVHIKNLRRKLDADPA-RYIDTVRGVGYRM 273 >gi|42518151|ref|NP_964081.1| two-component regulatory system response regulator [Lactobacillus johnsonii NCC 533] gi|41582435|gb|AAS08047.1| two-component regulatory system response regulator [Lactobacillus johnsonii NCC 533] gi|329666463|gb|AEB92411.1| two-component system response regulator [Lactobacillus johnsonii DPC 6026] Length = 235 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 44/226 (19%), Positives = 91/226 (40%), Gaps = 12/226 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G ++ E D+ ++ L + L Sbjct: 5 ILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVEEYNPDLMILDLML--PKKDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-------- 113 E+ R +R +P+I ++ + + + G DD V KP +RE++ARV Sbjct: 63 EVAREVRQTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRDL 122 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + G + + + E GE L RE +L YL + G+ + + + Sbjct: 123 TQKATEDDEDKNITIGNLVIMPEAYMVEKNGEKIELTHREFELLHYLAQHMGQVMTREHL 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGY 218 ++G +D + V+ + +LR+K+ + + ++R +GY Sbjct: 183 LQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSSPTILVTRRGVGY 227 >gi|119718004|ref|YP_924969.1| response regulator receiver [Nocardioides sp. JS614] gi|119538665|gb|ABL83282.1| response regulator receiver [Nocardioides sp. JS614] Length = 297 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 41/229 (17%), Positives = 84/229 (36%), Gaps = 14/229 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + + G + + L DV ++ L G +E Sbjct: 67 MVVEDEVELAAVVGSYLERAGYEVALAHDGLRAVDLAREVDPDVVILDLGL--PGIDGIE 124 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILARV 112 + R +R S ++ ++ L G DD + KP R Sbjct: 125 VCRRLRTFSDCYVVMLTARSDEVDMLIGLSVGADDYMTKPFSPRELLARLQAILRRPRPK 184 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + G + + + R+ ++ E+ PL R E +L L ++ Q Sbjct: 185 TGQRADVATAGTILTFGALSIDVEAREVWLRDELVPLTRTEFDLLATLAERPRLVFSRRQ 244 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220 + ++G D +E++V+ HI LR+KL + + + R +GY + Sbjct: 245 LIDRVWGE-DWVGDEHLVDVHIGHLRRKLDDDASRGQYLRTVRGVGYRM 292 >gi|317501849|ref|ZP_07960034.1| DNA-binding response regulator ResD [Lachnospiraceae bacterium 8_1_57FAA] gi|331088638|ref|ZP_08337549.1| hypothetical protein HMPREF1025_01132 [Lachnospiraceae bacterium 3_1_46FAA] gi|316896739|gb|EFV18825.1| DNA-binding response regulator ResD [Lachnospiraceae bacterium 8_1_57FAA] gi|330407595|gb|EGG87095.1| hypothetical protein HMPREF1025_01132 [Lachnospiraceae bacterium 3_1_46FAA] Length = 225 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 36/223 (16%), Positives = 94/223 (42%), Gaps = 6/223 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + ++ +G ++ + +E ++ + ++ + Sbjct: 7 LVVDDESRMRKLVKDFLTREGYAVLEAGDGMEAMDIFYEDKE-IALVILDVMMPKMDGWQ 65 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV--NKPIHHREILARVAAIYRRLK 120 + R IR S+VP+I ++ + L F+ GVD+ + Sbjct: 66 VCREIRETSKVPIIMLTARSEERDELQGFELGVDEYISKPFSPKILVARVNAILRRTLGN 125 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + E G I++ ++ ++ L +E +L Y + N+G +++ +I + ++ Sbjct: 126 TAGDVIEAGDIKIDKAAHIVKINDKMIDLSYKEFELLSYFVENQGIALSREKILNNVW-N 184 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 +D + +++H+ KLR KL ++ + + + +GY + N Sbjct: 185 YDYFGDARTIDTHVKKLRSKLGDRG--EYIKTIWGMGYKFEVN 225 >gi|291544436|emb|CBL17545.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus sp. 18P13] Length = 224 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 46/225 (20%), Positives = 92/225 (40%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++ +G + L S DV ++ Sbjct: 4 LLIVDDEANIRLVVKEYAEFEGYEVAEAEDGMQAVELVKSQDFDVIIMDIM--MPRLDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + I+ + +P+I +S L F+ G+DD V KP +E++ARV A+ +R + Sbjct: 62 SACKEIKKYKNIPVIMLSARGEEYDKLFGFELGIDDYVVKPFSPKELMARVKAVIKRSEH 121 Query: 122 SNNRAETGPIR----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + GR+ V G+ + +E +L YL+ N + + ++ + Sbjct: 122 AAPANPDRLKFEGLEIDMAGREVYVNGKRVSMTPKEYDLLFYLVKNSNIALTRDKLLEEV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +G +D ++ V++HI LR L + + R +GY + Sbjct: 182 WG-YDFFGDDRTVDTHIKMLRNSLGEY--RKFIVTLRGMGYKFEV 223 >gi|317051237|ref|YP_004112353.1| response regulator receiver [Desulfurispirillum indicum S5] gi|316946321|gb|ADU65797.1| response regulator receiver [Desulfurispirillum indicum S5] Length = 235 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 46/224 (20%), Positives = 88/224 (39%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + G+ + E R DV ++ L G + Sbjct: 9 ILIIEDDRRLAQLISEYLQSHGLVVRVETDGERGLREALRHRYDVILLDLGL--PGRDGI 66 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + +R HS +P++ + + + G DD + KP RE+LAR+ A RR++ Sbjct: 67 SVCQQLRGHSDIPILITTARGEEADKVLGLEVGADDYIAKPYSPRELLARIRAFTRRMRG 126 Query: 122 SNNRAETGPI----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + + L E +L L +N G+ +++ ++ Sbjct: 127 QVGPRHAVLQVGSLCLEPEALQATLDSSRLDLTSYEFALLYALASNAGQVLSRERLMELA 186 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220 G D+A + V+ HIS+LR+KL + + + R GY Sbjct: 187 RGSSDDAFD-RSVDVHISRLRQKLGDNSRPVKMIRTVRGAGYQF 229 >gi|229099289|ref|ZP_04230220.1| Two-component response regulator [Bacillus cereus Rock3-29] gi|229118303|ref|ZP_04247659.1| Two-component response regulator [Bacillus cereus Rock1-3] gi|228665133|gb|EEL20619.1| Two-component response regulator [Bacillus cereus Rock1-3] gi|228684107|gb|EEL38054.1| Two-component response regulator [Bacillus cereus Rock3-29] Length = 229 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 52/229 (22%), Positives = 90/229 (39%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++++ F + + + + D+ ++ L Sbjct: 5 ILIVEDEEILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIML--PELDGW 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR-------EILARVAA 114 + R IR S+VP+I ++ TL F+ G DD V KP +L A Sbjct: 63 SVCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKA 122 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + L+ ++ I V R V L E IL Y M N+G + + Q+ Sbjct: 123 SKKPLENEDDTLSIHGIHVHFPSRTVTVDEVDVSLTHTEFEILVYFMKNQGIVLTREQLI 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 S I+G ++ A ++ V SHI LR KL K + + GY + N Sbjct: 183 SRIWG-YEFAGDDRTVNSHIRNLRNKLGEK--AKYITTVVRTGYKFEGN 228 >gi|209544301|ref|YP_002276530.1| winged helix family two component transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|209531978|gb|ACI51915.1| two component transcriptional regulator, winged helix family [Gluconacetobacter diazotrophicus PAl 5] Length = 226 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 50/223 (22%), Positives = 96/223 (43%), Gaps = 6/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D V++ + G +E ++ + +L S D+ ++ L G G L Sbjct: 3 ILVVEDDPTVRNFVAKGLREAGHLVEPVDNGKDGLFLAVSENFDLIILDRMLPG-GIDGL 61 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYR 117 L IRA + P++ +S + + +G DD V KP E + ++ R Sbjct: 62 RLLETIRAQNNSTPVLLLSALADVDDRVQGLKAGGDDYVTKPFAFSELLARVEALSRRGR 121 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 R + + R G+ L RE R+LEYLM + G+ V +T + + Sbjct: 122 SDNAPLTRLNVADLEIDLLSRSVRRGGQRIDLQPREFRLLEYLMRHAGQVVTRTMLLEGV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + + NV++ H+S+LR+K+ + + R GY + Sbjct: 182 WD-YHFDPQTNVIDVHVSRLRQKVDKPFDTPLIHTIRNAGYML 223 >gi|153008102|ref|YP_001369317.1| two component transcriptional regulator [Ochrobactrum anthropi ATCC 49188] gi|239833192|ref|ZP_04681521.1| phosphate regulon transcriptional regulatory protein PhoB [Ochrobactrum intermedium LMG 3301] gi|151559990|gb|ABS13488.1| two component transcriptional regulator, winged helix family [Ochrobactrum anthropi ATCC 49188] gi|239825459|gb|EEQ97027.1| phosphate regulon transcriptional regulatory protein PhoB [Ochrobactrum intermedium LMG 3301] Length = 228 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 43/224 (19%), Positives = 88/224 (39%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++D + +G ++ + E D+ ++ L G + Sbjct: 7 IAVVEDEEALSVLLRYNLEAEGYQVDTMLRGDEAEIALRENVPDLLILDWML--PGVSGI 64 Query: 62 ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIY 116 EL R +R + P+I ++ + G DD V KP E+ + Sbjct: 65 ELCRRLRQWPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKAMLRR 124 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + ++ + G + + + + L E R+LEY M + G+ +++Q+ Sbjct: 125 SNPSILSHVLKVGDLVLDRQQHRVYRKEKEVRLGPTEFRLLEYFMMSPGRVFSRSQLLDG 184 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G D V++ V+ H+ +LRK + DP+ + R GYS Sbjct: 185 VWG-PDIYVDDRTVDVHVGRLRKAINVGRALDPIRTVRGAGYSF 227 >gi|256825954|ref|YP_003149914.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Kytococcus sedentarius DSM 20547] gi|256689347|gb|ACV07149.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Kytococcus sedentarius DSM 20547] Length = 238 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 42/225 (18%), Positives = 85/225 (37%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D +++ G + L + D+ ++ L Sbjct: 9 LLVVEDEPNIRELLATSLRFAGFEVHTAAQGSTALQLAAEVEPDLLVLDVML--PDMDGF 66 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-----HHREILARVAAI 115 + R +R +P++ ++ S+ + G DD V KP R + Sbjct: 67 TITRRLRERDQHMPVLFLTARDSVDDKVKGLTVGGDDYVTKPFSLEEVVARIRAILRRSH 126 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + + D + G V + E +L YLM N + ++K QI Sbjct: 127 AEDQADEDRVLTFEDLTLNEDTYEVSRAGRVIEVSPTEFNLLRYLMQNPHRVLSKAQILD 186 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +D E +VES+IS LR+K+ + + +KR +GY + Sbjct: 187 HVWD-YDFRGEMGIVESYISYLRRKIDTEGLPPLIHTKRGVGYVL 230 >gi|163816645|ref|ZP_02208008.1| hypothetical protein COPEUT_02835 [Coprococcus eutactus ATCC 27759] gi|158447902|gb|EDP24897.1| hypothetical protein COPEUT_02835 [Coprococcus eutactus ATCC 27759] Length = 235 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 45/225 (20%), Positives = 94/225 (41%), Gaps = 10/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD L+ G D + ++ + D+ ++ + +E Sbjct: 12 LVVDDEKLIVKGLKFSLEQDDMEVDTAYDGGEAVEKIKNNDYDIVLLDIMI--PVYTGIE 69 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH------HREILARVAAIY 116 + +++R S VP+I ++ + + G DD + KP + + + R + Sbjct: 70 VCQMVREFSNVPIIMLTAKGEDMDKIMGLEYGADDYITKPFNILEVKARMKAILRRSGKK 129 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + +N E ++V D R V G+ L +E +LE LMA+ K ++ ++ S Sbjct: 130 QAPVKQSNVMEVNGMKVELDSRRVFVGGKELNLTAKEFDLLELLMAHPNKVYSRNELLST 189 Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 I+G + V+ H+ +LR+K+ N + +K +GY Sbjct: 190 IWGDS-YPGDARTVDVHVRRLREKIEANPGEPVYIHTKWGVGYFF 233 >gi|163940906|ref|YP_001645790.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163863103|gb|ABY44162.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] Length = 223 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 42/221 (19%), Positives = 93/221 (42%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L DD +++ +G + + + + ++ ++ Sbjct: 4 ILLADDDKHIRELLHYHLQKEGFKVFEAEDGKVAQGVLEKENIHLAIVDIM--MPFVDGY 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L IR + +P+I ++ L F SG DD + KP E++ R+ A+ RR ++ Sbjct: 62 TLCEEIRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQM 121 Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + T + G + + G+ LP +E +L L + G+ ++ ++ ++G+ Sbjct: 122 LSADIITLHGTIIDRKGFEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D +E V+ H+ +LR + + + + R LGY ++ Sbjct: 182 -DFEGDERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 221 >gi|319442620|ref|ZP_07991776.1| CheY-like receiver domain/winged-helix DNA-binding domain-containing response regulator [Corynebacterium variabile DSM 44702] Length = 225 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 49/224 (21%), Positives = 96/224 (42%), Gaps = 5/224 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + DG +G+ ++ N E + S A D ++ G Sbjct: 3 ILVVDDEVRLADGVRRGLEAEGMVVDVVNDGETGLAMASDADYDAIVLDVM--MPGMNGY 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + +R P++ ++ ++ D+G DD + KP + ++AR+ A+ RR Sbjct: 61 RVCEALREDGNWTPVLFLTAKDGEWDEVEGLDTGGDDWLTKPFSYPVLVARLRAMVRRGS 120 Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + R+ R + PL RE +L++L+ + G+ V K ++ + ++G Sbjct: 121 RGRPEILSAGDLRLDPAARQAYRSDDEIPLTARELAVLDFLLRHAGEVVTKQEVLANVWG 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 + N+VE +I LR K+ G + + R GY +D N Sbjct: 181 GS-FDGDTNIVEVYIGHLRAKVDRPFGRAAIGTVRGAGYRLDRN 223 >gi|294501968|ref|YP_003565668.1| two-component response regulator WalR [Bacillus megaterium QM B1551] gi|294351905|gb|ADE72234.1| two-component response regulator WalR [Bacillus megaterium QM B1551] Length = 235 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 47/228 (20%), Positives = 92/228 (40%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + + ++ ++ L K + Sbjct: 5 ILVVDDEKPIADILKFNLQKEGYEVFCAYDGVEALEKVEEVQPEMILLDIMLPQK--DGM 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R +P+I ++ S + + G DD V KP RE+LARV A RR + Sbjct: 63 EVCREVRKKYDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQ 122 Query: 122 SNNRAETGPIR--------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 E + D +GE L RE +L YL + G+ + + + Sbjct: 123 VAAPTEESETNEITIGALVIHPDAYIVSKRGETIELTHREFELLHYLAKHIGQVMTREHL 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++G +D + V+ + +LR+K+ + + ++R +GY + Sbjct: 183 LQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPMWIVTRRGVGYYL 229 >gi|206973171|ref|ZP_03234093.1| two component transcriptional regulator, winged helix family [Bacillus cereus AH1134] gi|206732055|gb|EDZ49255.1| two component transcriptional regulator, winged helix family [Bacillus cereus AH1134] Length = 342 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 51/227 (22%), Positives = 94/227 (41%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ A ++G+ + L D+ ++ + Sbjct: 119 ILIVDDDKEIRNLISAYLENEGLKTQKAEDAMEALQLLEEKEFDLIILDIM--MPNMDGI 176 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E IR +P+I +S + SG DD ++KP + E++ARV + RR K Sbjct: 177 EACMKIREDRNIPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 236 Query: 122 SNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N+ V +D R V+G+ L +E ILE L N+G ++ +I+ Sbjct: 237 YNSSIGHNKSILEIGDLTVNTDTRQVWVRGKETRLTPKEFAILELLARNKGIVMSVAKIY 296 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220 A++ +N V HI+K+R K+ + + +GY I Sbjct: 297 EAVWEEV-FYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGYKI 342 >gi|254392878|ref|ZP_05008047.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|197706534|gb|EDY52346.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 229 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 44/219 (20%), Positives = 92/219 (42%), Gaps = 5/219 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + + +G + A+ D+ ++ L G +E Sbjct: 10 LVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLML--PGRDGIE 67 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLKV 121 + R+IRA S VP++ ++ + +SG DD + KP +E++AR+ A R + Sbjct: 68 VCRLIRAESGVPIVMLTAKSDTVDVVVGLESGADDYIIKPFKPKELVARIRARLRRSEEP 127 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + G + + G + G+ L E +L L + + + ++G + Sbjct: 128 APEQLTIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWG-Y 186 Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219 A + +V H+ +LR K+ + V + R +GY Sbjct: 187 RHAADTRLVNVHVQRLRSKVEKDPERPEIVVTVRGVGYK 225 >gi|118618059|ref|YP_906391.1| two component sensory transduction transcriptional regulatory protein MtrA [Mycobacterium ulcerans Agy99] gi|118570169|gb|ABL04920.1| two component sensory transduction transcriptional regulatory protein MtrA [Mycobacterium ulcerans Agy99] Length = 228 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 43/220 (19%), Positives = 85/220 (38%), Gaps = 5/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A + + + +G R D+ ++ L G + Sbjct: 8 ILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDLML--PGMNGI 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R++RA S VP++ ++ + +SG DD + KP +E++ARV A RR Sbjct: 66 DVCRVLRADSGVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRRNDD 125 Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + GE L E +L L + + + ++G Sbjct: 126 EPAEMLSIADVDIDVPAHKATRNGEQISLTPLEFDLLVALARKPRQVFTRDVLLEQVWG- 184 Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219 + + +V H+ +LR K+ + V + R +GY Sbjct: 185 YRHPADTRLVNVHVQRLRAKVEKDPENPTVVLTVRGVGYK 224 >gi|222055094|ref|YP_002537456.1| two component transcriptional regulator, winged helix family [Geobacter sp. FRC-32] gi|221564383|gb|ACM20355.1| two component transcriptional regulator, winged helix family [Geobacter sp. FRC-32] Length = 226 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 40/227 (17%), Positives = 89/227 (39%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + + +G D+ ++ L G Sbjct: 4 ILVIEDERDLAELIAFNLEKEGHRPLIALDGLVGLEAARKNPPDLILLDLML--PGMAGT 61 Query: 62 ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AI 115 E+ +I++ + +P+I ++ + F+ G DD + KP RE++ RV Sbjct: 62 EICKILKGNGKTASIPVIMLTAKGEEIDRVVGFEVGADDYIVKPFSTRELMLRVKALLRR 121 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + GP+ + ++ V + L E ++L L G+ ++ + Sbjct: 122 TLPEQPRKKVFSVGPVSIDTERHLVTVADKEILLTTIEYKLLLDLAERAGRVQSRDILLQ 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 ++G ++ + V++H+++LR KL + D + + R GY I+ Sbjct: 182 NVWG-YNYVGDSRTVDTHVTRLRTKLGSAG--DMIKTVRGFGYKIEE 225 >gi|315127525|ref|YP_004069528.1| transcriptional regulator [Pseudoalteromonas sp. SM9913] gi|315016039|gb|ADT69377.1| transcriptional regulator [Pseudoalteromonas sp. SM9913] Length = 229 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 41/223 (18%), Positives = 92/223 (41%), Gaps = 8/223 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD A +++ + + +G + D+ ++ L G ++ Sbjct: 6 LVVDDEAPIREMLVFVLEQNGFQAIEAEDYDSAIAAMVEPYPDMVLLDWML--PGGSGIQ 63 Query: 63 LPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 + + + + +P+I ++ + + + G DD V KP +E++AR+ A+ RR+ Sbjct: 64 IAKKFKQNEHTRQIPIIMLTARGEEEDKIRGLEVGADDYVTKPFSPKELMARIKAVIRRV 123 Query: 120 KVSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 ++ R+ G + E R+L + M + + ++ Q+ + Sbjct: 124 APTSLEEAIEVHGLRLDPISHRVTSGGSELDMGPTEFRLLHFFMTHPERVYSREQLLDHV 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G + VE+ V+ HI +LRK + V + R GY Sbjct: 184 WGT-NVYVEDRTVDVHIRRLRKAIATLGHDRLVQTVRGAGYRF 225 >gi|307312356|ref|ZP_07591990.1| two component transcriptional regulator, winged helix family [Escherichia coli W] gi|306907527|gb|EFN38030.1| two component transcriptional regulator, winged helix family [Escherichia coli W] gi|315061354|gb|ADT75681.1| DNA-binding response regulator in two-component regulatory system with BaeS [Escherichia coli W] gi|320198770|gb|EFW73370.1| Response regulator BaeR [Escherichia coli EC4100B] gi|323183860|gb|EFZ69251.1| transcriptional regulatory protein baeR [Escherichia coli 1357] gi|323378066|gb|ADX50334.1| two component transcriptional regulator, winged helix family [Escherichia coli KO11] Length = 240 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 43/224 (19%), Positives = 88/224 (39%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + I + + + D+ ++ L G L Sbjct: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLML--PGIDGL 70 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 L R IR S +P++ ++ L + G DD + KP RE++ARV + Sbjct: 71 TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + P+ + +G++ L E R+L+ L GK ++ + + +Y Sbjct: 131 QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREHLLNHLY 190 Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + V + ++SHI LR+KL + + + +GY + Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 >gi|296166498|ref|ZP_06848929.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295898110|gb|EFG77685.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 239 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 51/224 (22%), Positives = 93/224 (41%), Gaps = 10/224 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD A + + G + + AR D ++ G Sbjct: 16 LVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRAREARPDAVILDVM--MPGMDGFG 73 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118 + R +RA P + ++ SLQ + G DD V KP E++AR+ I RR Sbjct: 74 VLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAGK 133 Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + R I + + + G+ L E +L Y + N G ++K +I Sbjct: 134 GGAEPRSARLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDH 193 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +D + NVVES++S LR+K+ + + + R +GY + Sbjct: 194 VW-RYDFGGDVNVVESYVSYLRRKI-DTGEKRLLHTLRGVGYVL 235 >gi|146309422|ref|YP_001189887.1| two component transcriptional regulator [Pseudomonas mendocina ymp] gi|145577623|gb|ABP87155.1| two component transcriptional regulator, winged helix family [Pseudomonas mendocina ymp] Length = 229 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 94/224 (41%), Gaps = 9/224 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A +++ G + + + + D+ ++ L G + Sbjct: 6 ILIVDDEAPIREMIAVALEMAGYECLEAENTQQAHAVIVDRKPDLILLDWML--PGTSGI 63 Query: 62 ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IY 116 EL R ++ S +P+I ++ + + G DD + KP RE++AR+ A Sbjct: 64 ELARRLKRDELTSDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 S E G + + + G+ + E R+L++ M ++ + + Q+ Sbjct: 124 AGPSDSEAPIEVGGLLLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAYTRGQLLDQ 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + VEE V+ HI +LRK L + + V + R GY Sbjct: 184 VWG-GNVYVEERTVDVHIRRLRKALGDAYE-NLVQTVRGTGYRF 225 >gi|90414588|ref|ZP_01222561.1| putative DNA-binding response regulator PhoB [Photobacterium profundum 3TCK] gi|90324304|gb|EAS40873.1| putative DNA-binding response regulator PhoB [Photobacterium profundum 3TCK] Length = 229 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 38/222 (17%), Positives = 92/222 (41%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D A +++ + G + ++ ++ L G G + Sbjct: 5 ILVVEDEAPIREMLCFVLEQKGYQPIEAEDYDDALEKICEPYPELILMDWMLPGGSGINL 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ + Q+P++ ++ + + + G DD + KP +E++AR+ A+ RR+ Sbjct: 65 IKHLKRDELTRQIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELMARLKAVMRRVS 124 Query: 121 VSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++ ++ E + E ++L + M ++ + ++ Q+ + ++ Sbjct: 125 PTSLDDVIDVQGLKLDPVSHRVTTNDEPLDMGPTEFKMLHFFMTHQERVYSREQLLNNVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G + VE+ V+ HI +LRK L V + R GY Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALEAGGHDKMVQTVRGAGYRF 225 >gi|117928972|ref|YP_873523.1| two component transcriptional regulator [Acidothermus cellulolyticus 11B] gi|117649435|gb|ABK53537.1| two component transcriptional regulator, winged helix family [Acidothermus cellulolyticus 11B] Length = 225 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 46/219 (21%), Positives = 89/219 (40%), Gaps = 5/219 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + + +G + + DV ++ L G ++ Sbjct: 6 LVVDDDTALAEMLGIVLRGEGFEPHFVFDGDKALAAFREVKPDVVLLDLML--PGTDGID 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IRA S VP++ ++ + +SG DD V KP +E++AR+ A RR Sbjct: 64 VCRQIRAESGVPIVMLTAKSDTVDVVVGLESGADDYVVKPFKPKELVARLRARLRRTDEP 123 Query: 123 NNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 G + + G G+ PL E +L L ++ + ++G + Sbjct: 124 APEILTIGDVTIDVAGHSVTRDGQPIPLTPLEFDLLVALARKPRHVFSREVLLEQVWG-Y 182 Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219 A + +V H+ +LR K+ + + V + R +GY Sbjct: 183 RHAADTRLVNVHVQRLRSKIEKDPDHPEIVLTVRGVGYK 221 >gi|182435928|ref|YP_001823647.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326776552|ref|ZP_08235817.1| two component transcriptional regulator, winged helix family [Streptomyces cf. griseus XylebKG-1] gi|178464444|dbj|BAG18964.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326656885|gb|EGE41731.1| two component transcriptional regulator, winged helix family [Streptomyces cf. griseus XylebKG-1] Length = 220 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 47/223 (21%), Positives = 92/223 (41%), Gaps = 10/223 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G +++ + S D+ ++ L G Sbjct: 3 LLIVEDEKRLAVSLARGLTAEGFAVDVVHDGLEGLHRASEGAYDLVILDIML--PGMNGY 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119 + +RA P++ ++ + D+G DD + KP + ++ARV A+ RR Sbjct: 61 RVCSNLRAAGHEVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARVRALLRRRG 120 Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + G +RV + R + L +E +LE L G+ V+K +I ++ Sbjct: 121 AGTAAPVLTVGALRVDTAARRVIRGEDEITLTAKEFAVLEQLALRAGQVVSKAEILEHVW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 F + N+VE +IS LR+KL + + R GY ++ Sbjct: 181 D-FAYDGDPNIVEVYISTLRRKLGASA----IRTVRGAGYRLE 218 >gi|320528447|ref|ZP_08029609.1| response regulator receiver domain protein [Solobacterium moorei F0204] gi|320131361|gb|EFW23929.1| response regulator receiver domain protein [Solobacterium moorei F0204] Length = 227 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 47/226 (20%), Positives = 94/226 (41%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A +++ I +G L D+ ++ Sbjct: 4 ILIVDDEAKIRELIIKYAKHEGFETAEAADGMEAVELCEKNNYDLVVMDIM--MPHLDGF 61 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + I+ P I +S + FD GVDD V KP +E++ R+ AI +R+ Sbjct: 62 SAVKEIKKTKPQLPFILLSALGEEYDRIHGFDVGVDDYVVKPFSSKELMMRIHAILKRVH 121 Query: 121 V----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 S+ + + + + R ++G+ L +E +L YL+ N G + + Q+ Sbjct: 122 PVEAVSSEQFQIDGMVIDYSARTVTIEGQRIQLSPKEYELLVYLVKNMGIALTREQLLQN 181 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 ++G +D ++ +++HI LRK L + + + R +GY + Sbjct: 182 VWG-YDFFGDDRTLDTHIKLLRKNLGDY--AKYIITLRGVGYRFEK 224 >gi|77918267|ref|YP_356082.1| two-component response regulator PhoB [Pelobacter carbinolicus DSM 2380] gi|77544350|gb|ABA87912.1| two-component response regulator PhoB [Pelobacter carbinolicus DSM 2380] Length = 230 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 42/228 (18%), Positives = 89/228 (39%), Gaps = 14/228 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G + + E + D+ ++ L G L Sbjct: 6 ILVVEDEEDILALLHYNLVREGFRVSLAGTGEEGLETLAEDPPDLVVLDLML--PGMDGL 63 Query: 62 ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 ++ R ++ + + ++ ++ + + G DD V KP + ++AR+ ++ RR Sbjct: 64 QVCRALKENADTRHIAVVMVTAKGEEADVVAGLELGADDYVTKPFSPKILIARIRSVLRR 123 Query: 119 LKV------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + + V+G L E R+L +L + G + Q Sbjct: 124 RESADETGADQVVVHIDDLVIHPGRNQVTVKGVPVDLTFTEFRVLHFLASRPGWVFTRYQ 183 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I +A+ G D +V + V+ I LRKKL +++ R +GY Sbjct: 184 IVNAVRG-DDYSVTDRAVDVQIVGLRKKLGAYG--KYIETVRGVGYRF 228 >gi|41409458|ref|NP_962294.1| hypothetical protein MAP3360c [Mycobacterium avium subsp. paratuberculosis K-10] gi|118464131|ref|YP_883351.1| DNA-binding response regulator MtrA [Mycobacterium avium 104] gi|254822993|ref|ZP_05227994.1| DNA-binding response regulator MtrA [Mycobacterium intracellulare ATCC 13950] gi|296168959|ref|ZP_06850628.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC BAA-614] gi|41398289|gb|AAS05910.1| MtrA [Mycobacterium avium subsp. paratuberculosis K-10] gi|118165418|gb|ABK66315.1| DNA-binding response regulator MtrA [Mycobacterium avium 104] gi|295896428|gb|EFG76081.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 228 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 43/220 (19%), Positives = 85/220 (38%), Gaps = 5/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A + + + +G R D+ ++ L G + Sbjct: 8 ILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDLML--PGMNGI 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R++RA S VP++ ++ + +SG DD + KP +E++ARV A RR Sbjct: 66 DVCRVLRADSGVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRRNDD 125 Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + GE L E +L L + + + ++G Sbjct: 126 EPAEMLSIADVEIDVPAHKVTRNGEQISLTPLEFDLLVALARKPRQVFTRDVLLEQVWG- 184 Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219 + + +V H+ +LR K+ + V + R +GY Sbjct: 185 YRHPADTRLVNVHVQRLRAKVEKDPENPTVVLTVRGVGYK 224 >gi|331083633|ref|ZP_08332744.1| hypothetical protein HMPREF0992_01668 [Lachnospiraceae bacterium 6_1_63FAA] gi|330403844|gb|EGG83396.1| hypothetical protein HMPREF0992_01668 [Lachnospiraceae bacterium 6_1_63FAA] Length = 227 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 42/222 (18%), Positives = 90/222 (40%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G + S + L + ++ L G Sbjct: 7 ILIVEDDTDINNLLFTALKKQGYTATQAFSGTEAKMLLKMENFALILLDLML--PGISGE 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ I+ +I ++ +L ++ +G DD + KP +E+LARV RR Sbjct: 65 EVLEFIKEQGNSAVIILTAKDTLDDKVNLLIAGADDYITKPFEIQEVLARVQVQLRRSVQ 124 Query: 122 SNNRAETGPIRVFSDGRDPEVQGE---VFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 N ++ D +++ E + + ++E ILE L+ + + +K IF + Sbjct: 125 EGNSNVLSHKQMVLDREKFQIKVEGQLMGKITKQEFSILELLLKHPKQVFSKEDIFEYAW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 E ++ HIS +RKK++ + +++ +GY + Sbjct: 185 EEP-YMGETKTLDVHISNIRKKIKEVTKEEYIETVWGIGYRL 225 >gi|311069979|ref|YP_003974902.1| two-component response regulator [Bacillus atrophaeus 1942] gi|310870496|gb|ADP33971.1| two-component response regulator [Bacillus atrophaeus 1942] Length = 237 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 45/230 (19%), Positives = 95/230 (41%), Gaps = 11/230 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + G ++ L + ++ + D+ ++ L Sbjct: 4 ILLVEDDTRIASLLCGHLQKYGYHVQIAEKLNQIKEEFTAMKPDLVLLDINL--PYFDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 R IR S VP+I IS + + G DD + KP H +LA++ ++ RR Sbjct: 62 YWCRQIRTISNVPIIFISARTDELNQVMAIEHGGDDYITKPFHLEVVLAKIKSVLRRTYG 121 Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + + ++ D + E + ++E ++L + K V + ++ Sbjct: 122 EYSPSISQESKVVEIGELYIYPDKYEAEWKNNRMSFSQKEFQLLSIFVKEHKKIVTRDEL 181 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 A++ D V++N + ++++LRKKL N + + + R GY + N Sbjct: 182 LEALWDEIDF-VDDNTLTVNVNRLRKKLENAGLQEAITTIRGKGYKFEIN 230 >gi|239979030|ref|ZP_04701554.1| two component system response regulator [Streptomyces albus J1074] gi|291450908|ref|ZP_06590298.1| two component system response regulator [Streptomyces albus J1074] gi|291353857|gb|EFE80759.1| two component system response regulator [Streptomyces albus J1074] Length = 221 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 46/222 (20%), Positives = 91/222 (40%), Gaps = 10/222 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G + E + D+ ++ L G Sbjct: 4 ILIVEDEERIASFIEKGLRANGFTTTVAADGESAHDYALTGGFDLVLLDIGL--PGRDGF 61 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R +R P+I ++ S++ T+ + G DD + KP E+LARV R Sbjct: 62 TVLRDLREARVTAPVIVLTARDSVRDTVAGLEGGADDWMTKPFRFEELLARVRLRLRTAA 121 Query: 121 VSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + G + + R E L RE +LE + + G+ +++ QI S ++ Sbjct: 122 RAPEVTVLRCGEVTLDLRTRRARSGEETVDLTAREFVLLELFLRHPGQVLSREQILSQVW 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G +D N+V+ ++ LR+KL +++ R +GY + Sbjct: 182 G-YDFDPGSNIVDVYVRALRRKLGAH----RIETVRGMGYRL 218 >gi|219667342|ref|YP_002457777.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219537602|gb|ACL19341.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 234 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 37/228 (16%), Positives = 84/228 (36%), Gaps = 13/228 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L+DD + + + L ++ E D+ ++ L E Sbjct: 8 LLVDDEESIYRVVEQVLKREAYELLYADNGEGALESFQKESPDLVILDVMLPL--IDGYE 65 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARVA 113 + R IR S+VP++ +S + F+ G DD + KP E + Sbjct: 66 VCRTIRETSKVPILMLSAKGEIIDKSVGFNLGADDYLVKPFSPVELGLRVKALLRRSFDK 125 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + G + + + + V+G+ L +E +L ++ + + + Q+ Sbjct: 126 EQSVSKVRKTTKISKGELEINCESHEVFVRGKPVYLTPKEFELLTFMAEHPDQVFTREQL 185 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 F+ ++ + + + + I KLR+K+ + + + +GY Sbjct: 186 FAHMW-RDEYVNDTSTITVFIRKLREKIERDPAKPQYIQTVWGIGYKF 232 >gi|329766813|ref|ZP_08258343.1| hypothetical protein HMPREF0428_00040 [Gemella haemolysans M341] gi|328839324|gb|EGF88906.1| hypothetical protein HMPREF0428_00040 [Gemella haemolysans M341] Length = 216 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 47/219 (21%), Positives = 91/219 (41%), Gaps = 6/219 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ +G G G + E + D+ ++ L G+ Sbjct: 3 ILIVDDEKIILEGISEYLGTQGYHIFKAEDGEKALRVFRDNSVDLVILDIML--PGKTGF 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ IR S VP+I +S QT L F DD V KP + +R+ + R Sbjct: 61 EVLGEIRKTSNVPIILLSALNDEQTQLSGFALTADDYVIKPFSLPLLASRIKVLLNRHYG 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + +G + +E IL+ L+ N+ + +++ QI ++ Sbjct: 121 EHEIWTYKDAIIDFSSYTATFEGNSVDVKPKEIDILKLLLRNQNRVLSRGQIIEQLWNSL 180 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +E + V++ ++ LRKKL G D + + + +GY + Sbjct: 181 EEPPLDRVIDVYVKNLRKKL----GLDCIVTVKNVGYKL 215 >gi|317490524|ref|ZP_07949002.1| response regulator receiver domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|316910375|gb|EFV32006.1| response regulator receiver domain-containing protein [Eggerthella sp. 1_3_56FAA] Length = 232 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 58/227 (25%), Positives = 91/227 (40%), Gaps = 10/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 + DD + D L + G + F + Q+ D+ ++ G Sbjct: 7 IAVCDDEQAIADLVGQLLVEAGFAPTVFYAAPDLLACQADDPFDLVILDIM--MPGMDGF 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 R +R S VP+I ++ + F+ G DD V KP RE++ARV A RR Sbjct: 65 ACCRELRRTSSVPIIFLTAKDEEVDKVVGFELGADDYVVKPFKPRELVARVRARLRRATS 124 Query: 122 S-------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + E I + + GE L +E IL LM ++G+ VA +F Sbjct: 125 NDVASEDGPGMLECCGITLDESAYTATLHGEALSLTPKEFAILACLMRDQGRPVASRDLF 184 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 +++G A N V HI LRKKL + V++ +GY + Sbjct: 185 ESVWGEIANAQSNNTVMVHIRHLRKKLAAVDSSQEFVETVWGVGYKL 231 >gi|301054747|ref|YP_003792958.1| putative response regulator [Bacillus anthracis CI] gi|300376916|gb|ADK05820.1| predicted response regulator [Bacillus cereus biovar anthracis str. CI] Length = 223 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 42/221 (19%), Positives = 93/221 (42%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L DD +++ +G + + + + ++ ++ Sbjct: 4 ILLADDDKHIRELLHYHLQKEGFKVFEAEDGKVAQEVLEKENIHLAIVDIM--MPFVDGY 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L IR + +P+I ++ L F SG DD + KP E++ R+ A+ RR ++ Sbjct: 62 TLCEEIRKYHDIPVILLTAKDQLVDKERGFISGTDDYIVKPFEPAEVIFRMKALLRRYQM 121 Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + T + G + + G+ LP +E +L L + G+ ++ ++ ++G+ Sbjct: 122 LSADIITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D +E V+ H+ +LR + + + + R LGY ++ Sbjct: 182 -DFEGDERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 221 >gi|296103743|ref|YP_003613889.1| DNA-binding transcriptional regulator BaeR [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058202|gb|ADF62940.1| DNA-binding transcriptional regulator BaeR [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 240 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 49/224 (21%), Positives = 88/224 (39%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + I + + + D+ ++ L G L Sbjct: 13 ILIVEDEPKLGQLLIDYLRAASYAPSLISHGDQVLPYVRQTPPDLILLDLML--PGTDGL 70 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R IR S VP++ ++ L + G DD + KP RE++ARV I RR K Sbjct: 71 TLCREIRRFSDVPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 Query: 122 SNNRAE---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 P+ V + ++ L E R+L+ L GK ++ Q+ + +Y Sbjct: 131 QRELQVLDAESPLIVDESRFQASWRSKLLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190 Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + V + ++SHI LR+KL + + +GY + Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLEALDAEQSFIRAVYGVGYRWE 233 >gi|259500798|ref|ZP_05743700.1| DNA-binding response regulator [Lactobacillus iners DSM 13335] gi|315654109|ref|ZP_07907025.1| DNA-binding response regulator [Lactobacillus iners ATCC 55195] gi|259167492|gb|EEW51987.1| DNA-binding response regulator [Lactobacillus iners DSM 13335] gi|315488805|gb|EFU78451.1| DNA-binding response regulator [Lactobacillus iners ATCC 55195] Length = 244 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 42/225 (18%), Positives = 87/225 (38%), Gaps = 11/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G ++ E D+ ++ L + L Sbjct: 15 ILIVDDEKTISDIIKFNLTKEGYEVDTAYDGEEAVKKVDEFNPDLMILDLML--PKKDGL 72 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-------ILARVAA 114 E+ R +R + +I ++ + + + G DD V KP +RE L R Sbjct: 73 EVAREVRQSHDLSIIMVTAKAAEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRREI 132 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + N G + + + E G L RE +L YL + G+ + + + Sbjct: 133 TQKSKPDENANITIGNLVIMPEAYIVEKAGTNIELTHREFELLRYLAQHMGQVMTREHLL 192 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGY 218 ++G +D + V+ + +LR+K+ + + ++R +GY Sbjct: 193 QTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSTPSILVTRRGVGY 236 >gi|217970504|ref|YP_002355738.1| two component heavy metal response transcriptional regulator, winged helix family [Thauera sp. MZ1T] gi|217980166|ref|YP_002364216.1| heavy metal response regulator [Thauera sp. MZ1T] gi|217507831|gb|ACK54842.1| two component heavy metal response transcriptional regulator, winged helix family [Thauera sp. MZ1T] gi|217508337|gb|ACK55122.1| heavy metal response regulator [Thauera sp. MZ1T] Length = 228 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 42/225 (18%), Positives = 96/225 (42%), Gaps = 8/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + ++ ++ +S +L D+ ++ L G Sbjct: 3 ILVVEDELKLAEYLRKALTENSYVVDVAHSGTEGRYLAIEGHYDLVLLDVML--PGLDGF 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R +R VP++ ++ ++ + +G DD + KP E+LARV A+ RR + Sbjct: 61 AVLRELRRDKHVPVLMLTARDKVEDRVKGLQAGADDYLVKPFALSELLARVQALLRRGAL 120 Query: 122 SNNRAETG-----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 ++ + + R G+ L +E +L L+ G+ +++T + Sbjct: 121 PTPGQDSTVLKLADLELDLVRRKASRSGQRLDLTAKEFTLLTLLLRRHGQVLSRTALAEQ 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ + + NVVE + +LR KL + + + R +GY ++ Sbjct: 181 VWDM-NFESNTNVVEVAVRRLRSKLDDPFAKKLLHTVRGMGYVLE 224 >gi|256017749|ref|ZP_05431614.1| DNA-binding transcriptional regulator BaeR [Shigella sp. D9] gi|332278767|ref|ZP_08391180.1| DNA-binding response regulator in two-component system response regulatory system with BaeS [Shigella sp. D9] gi|332101119|gb|EGJ04465.1| DNA-binding response regulator in two-component system response regulatory system with BaeS [Shigella sp. D9] Length = 240 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 43/224 (19%), Positives = 88/224 (39%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + I + + + D+ ++ L G L Sbjct: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLML--PGIDGL 70 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 L R IR S +P++ ++ L + G DD + KP RE++ARV + Sbjct: 71 TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + P+ + +G++ L E R+L+ L GK ++ + + +Y Sbjct: 131 QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREHLLNHLY 190 Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + V + ++SHI LR+KL + + + +GY + Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 >gi|228940323|ref|ZP_04102894.1| DNA-binding response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228973239|ref|ZP_04133828.1| DNA-binding response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228786435|gb|EEM34425.1| DNA-binding response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228819449|gb|EEM65503.1| DNA-binding response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326940961|gb|AEA16857.1| two-component response regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 225 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 42/221 (19%), Positives = 93/221 (42%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L DD +++ +G + + + + ++ ++ Sbjct: 6 ILLADDDKHIRELLHYHLQKEGFQVFEAEDGKVAQDVLEKENIHLAIVDIM--MPFVDGY 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L IR + +P+I ++ L F SG DD + KP E++ R+ A+ RR ++ Sbjct: 64 TLCEEIRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQM 123 Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + T + G + + G+ LP +E +L L + G+ ++ ++ ++G+ Sbjct: 124 LSADIITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM 183 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D +E V+ H+ +LR + + + + R LGY ++ Sbjct: 184 -DFEGDERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 223 >gi|229014964|ref|ZP_04172045.1| Two-component response regulator [Bacillus mycoides DSM 2048] gi|228746314|gb|EEL96236.1| Two-component response regulator [Bacillus mycoides DSM 2048] Length = 228 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 50/227 (22%), Positives = 91/227 (40%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ ++G+ + L D+ ++ + Sbjct: 5 ILIVDDDKEIRNLISVYLENEGLKTQKAEDAIEALQLLEEKEFDLIILDIM--MPNMDGI 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E IR +P+I +S + SG DD + KP + E++ARV + RR K Sbjct: 63 EACMKIREDRNMPIIMLSAKSEDIDKIQGLASGADDYLTKPFNPLELIARVKSQLRRFKK 122 Query: 122 SNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N V +D R V+G+ L +E ILE L N+G ++ +I+ Sbjct: 123 YNTSINHNKSILEIGDLTVNTDTRQVWVRGKETRLTPKEFDILELLARNKGIVLSVAKIY 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220 A++ +N V HI+K+R K+ + + +GY I Sbjct: 183 EAVWKEV-FYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGYKI 228 >gi|148560182|ref|YP_001259941.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella ovis ATCC 25840] gi|148371439|gb|ABQ61418.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella ovis ATCC 25840] Length = 228 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 42/224 (18%), Positives = 88/224 (39%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++D + +G ++ + E + D+ ++ L G + Sbjct: 7 IAVVEDEEALSVLLRYNLEAEGYQVDTMLRGDEAEIALRESVPDLLILDWML--PGVSGI 64 Query: 62 ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIY 116 EL R +R + P+I ++ + G DD V KP E+ + Sbjct: 65 ELCRRLRQRPETGRLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKAMLRR 124 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + ++ + G + + + + L E R+LEY M + G+ +++Q+ Sbjct: 125 ANPSILSHVLKVGDLLLDRQQHRVYRKEKEVHLGPTEFRLLEYFMMSPGRVFSRSQLLDG 184 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G D V++ V+ H+ +LRK + D + + R GYS Sbjct: 185 VWG-PDIYVDDRTVDVHVGRLRKAINVGRAADLIRTVRGAGYSF 227 >gi|108803626|ref|YP_643563.1| two component transcriptional regulator [Rubrobacter xylanophilus DSM 9941] gi|108764869|gb|ABG03751.1| two component transcriptional regulator, winged helix family [Rubrobacter xylanophilus DSM 9941] Length = 231 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 49/224 (21%), Positives = 88/224 (39%), Gaps = 9/224 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L+DD A + + L +G + D+ ++ Sbjct: 5 ILLVDDDAALLEVTSILLVSEGYEVLAAEDGIEALETLDREEPDLVVLDIM--MPRLSGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IR S VP+I ++ + + G DD + KP +E+LAR+ AI RRL Sbjct: 63 EVLKKIRERSDVPVILLTAKSQSVDKVVGLELGADDYITKPFDTKELLARIKAILRRLGR 122 Query: 122 SNNRAETG-----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 G P+ + ++ GE L E +IL L+ G+ + QI A Sbjct: 123 REGGRRDGVLRLGPLEMDTNAYTVTRDGEPLDLTPTEFKILALLLRRPGQAFTRAQISEA 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219 + + ++ HIS+LR K+ + + + + +GY Sbjct: 183 V-STGSHYLASRYIDVHISRLRSKIERDPSRPEIIQTVPSVGYR 225 >gi|256374761|ref|YP_003098421.1| two component transcriptional regulator, winged helix family [Actinosynnema mirum DSM 43827] gi|255919064|gb|ACU34575.1| two component transcriptional regulator, winged helix family [Actinosynnema mirum DSM 43827] Length = 228 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 44/224 (19%), Positives = 88/224 (39%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V++ +G ++ + S R D ++ L Sbjct: 3 ILVVDDDRAVRESLRRSLQFNGYQVDLAGDGQQALESVLSQRPDAMVLDVM--MPRLDGL 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +R+ P++ ++ ++ + D+G DD + KP E+LAR+ A+ RR Sbjct: 61 EVCRRLRSTGDDLPILVLTARDAVSDRVSGLDAGADDYLPKPFALEELLARLRALLRRTA 120 Query: 121 VSNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 RD L R E +LE +A+ + + + +I Sbjct: 121 TDVEEPVNLLRFADLELDPGTRDVRRGERPISLTRTEFALLELFLAHPKQVLTRGRILED 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G +D N +E ++ LR+K + + R +GY + Sbjct: 181 VWG-YDFPTSGNALEVYVGYLRRKTEAGGEPRLLHTVRGVGYVL 223 >gi|114797709|ref|YP_760024.1| DNA-binding response regulator [Hyphomonas neptunium ATCC 15444] gi|114737883|gb|ABI76008.1| DNA-binding response regulator [Hyphomonas neptunium ATCC 15444] Length = 227 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 55/221 (24%), Positives = 101/221 (45%), Gaps = 9/221 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A ++ + G +++ E ++L + D ++ L + Sbjct: 3 ILVVEDDADLRRQLADVLSQSGYAVDLAADGEDGQFLGETEPYDAVVLDLGL--PKIDGV 60 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + + R P++ ++ + FD+G DD + KP E+LAR+ A+ RR Sbjct: 61 SVLKSWRKEGKTFPVLILTARDQWSEKVSGFDAGADDYLTKPFITEELLARLRALLRRAA 120 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S E G + V + V GE L E R+L YLM ++G+ V +T++ IY Sbjct: 121 GHSAATIECGKLMVDTRAARATVNGEPIKLTAHEYRVLSYLMHHQGRVVPRTELVEHIYD 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D + N +E I +LR+K+ G D + ++R LGY + Sbjct: 181 Q-DFDRDSNTIEVFIGRLRRKI----GQDRIQTERGLGYRL 216 >gi|300853961|ref|YP_003778945.1| transcriptional regulator [Clostridium ljungdahlii DSM 13528] gi|300434076|gb|ADK13843.1| transcriptional regulatory protein [Clostridium ljungdahlii DSM 13528] Length = 225 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 50/227 (22%), Positives = 90/227 (39%), Gaps = 10/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + L + + S L D+ ++ L G Sbjct: 4 ILIVEDDPKINKMVQTLLKKNEYEVVAAFSGTEALLLLEKESFDLILLDLML--PGLSGE 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116 E+ I Q+P+I +S L T L+ G DD + KP ++ E++ R Sbjct: 62 EILVKINEQFQIPIICVSAKDDLNTKLELIRDGADDYITKPFNNEELIVRIGAVLRRMNK 121 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 N + + S+ + E L +E ILE L+++ K K IF + Sbjct: 122 GMTIDKTNIFRFKDLILDSENHIVTINDEPIELTAKEYSILELLISSPRKVFTKQNIFES 181 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 ++ + ++E VV H+S LR KL K G + + + +GY + N Sbjct: 182 VWSE-EYIMDERVVTVHVSNLRNKL--KHGEEYIKTVWGIGYKMQDN 225 >gi|222056633|ref|YP_002538995.1| two component transcriptional regulator, winged helix family [Geobacter sp. FRC-32] gi|221565922|gb|ACM21894.1| two component transcriptional regulator, winged helix family [Geobacter sp. FRC-32] Length = 225 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 37/224 (16%), Positives = 90/224 (40%), Gaps = 6/224 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++I+D + + +G S D+ ++ L G G ++ Sbjct: 4 ILVIEDERDLAELIAFNLEKEGFRCLREADGTSGLETARSELPDLILLDLMLPGLMGTEI 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--ILARVAAIYRR 118 ++ + + +P++ ++ + F+ G DD + KP RE + R Sbjct: 64 CKILKKNEKTATIPIMMLTARGEEIDRVVGFEVGADDYIVKPFSIRELLLRIRAVLRRAA 123 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + GP+ + ++ ++ E L E ++L L+ RG+ ++ + ++ Sbjct: 124 PAAPACKLVIGPVHMDTERHQVLIENEEITLTTTEFKLLLNLVERRGRVQSRETLLQDVW 183 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 G ++ + V++H+++LR KL + + + R GY ++ Sbjct: 184 G-YNYVGDTRTVDTHVTRLRTKLGQAG--EMIKTIRGFGYKMEE 224 >gi|83594517|ref|YP_428269.1| two component transcriptional regulator [Rhodospirillum rubrum ATCC 11170] gi|83577431|gb|ABC23982.1| two component transcriptional regulator, winged helix family [Rhodospirillum rubrum ATCC 11170] Length = 229 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 50/221 (22%), Positives = 99/221 (44%), Gaps = 9/221 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L++D + + G +++ + E +L + D ++ L + Sbjct: 4 LLVEDEPTLALTLRRVLERAGFAVDLADDGEEALFLGETEPFDAVVLDLGL--PRLDGIG 61 Query: 63 LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120 + R RA VP++ ++ + F++G DD V KP E++ R+ A I R Sbjct: 62 VLRRWRAAGIGVPVLILTARGGWPEKVAGFEAGADDYVTKPFEMEEVVLRLKALIRRAAG 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + GP+R+ + V+G L +E +IL YL+ +G+ V+++ I +Y Sbjct: 122 HPSTELVAGPLRLDTTSGRGSVEGRPLDLTAQEYKILTYLLLRQGQTVSRSDIVDHVYDR 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D + NV++ + +LR+KL + + R LGY ++ Sbjct: 182 -DSDRDSNVIDVLVGRLRRKLGAP----LIHTVRGLGYRLE 217 >gi|309790146|ref|ZP_07684718.1| two component transcriptional regulator [Oscillochloris trichoides DG6] gi|308227731|gb|EFO81387.1| two component transcriptional regulator [Oscillochloris trichoides DG6] Length = 245 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 47/225 (20%), Positives = 90/225 (40%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD + D + + DV ++ Sbjct: 21 ILIADDDPSIAALIQVTLKDPRYEIIAVANGLEALKAFEKQPFDVVILDVM--MPYVDGF 78 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E IRA S VP++ ++ + + F+ G DD + KP E++ARV +I RR++ Sbjct: 79 EACERIRAQSDVPIVILTSRDGTEDVVHGFELGADDYITKPFKTVELIARVESILRRVEG 138 Query: 122 SNNRAETGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + R +R + V+G L E +L +L AN G+ + +F Sbjct: 139 YSARRAPPVVRVGELEIDEPRHRVSVRGSDVNLTPMEFELLYFLAANAGQVFDRETLFRE 198 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++G ++ E N+V+ + +LR+K+ + + R +GY + Sbjct: 199 VWG-YEYVGETNLVDVCVRRLREKVELIPSRPKIILTVRGVGYKL 242 >gi|302875335|ref|YP_003843968.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] gi|307688915|ref|ZP_07631361.1| two component transcriptional regulator, winged helix family protein [Clostridium cellulovorans 743B] gi|302578192|gb|ADL52204.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] Length = 231 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 43/229 (18%), Positives = 89/229 (38%), Gaps = 11/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ ++G ++ + + + D+ ++ + Sbjct: 6 ILVVDDEKEIRELIEIFLKNEGYTVVKATNGVETLEILENTIVDLIILDIM--MPKMDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 E IR + +P+I +S + SG DD V KP + E+LARV + RR Sbjct: 64 EACLNIRKNRNMPIIMLSAKNQDMDKILGLTSGADDYVEKPFNPLELLARVKSQLRRYKK 123 Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + E + + + + ++ L RE IL L NRG +I+ Sbjct: 124 LNVGSENKEGVIEIDNLTIDVNTHEVKLDNREINLTAREFDILLLLARNRGIVFNTEKIY 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDW 222 ++ + +N + HI +R+K+ + + +GY I+ Sbjct: 184 EKVW-KDEFFESDNTIMVHIRNIREKIEENPKKPVFIKTIWGVGYKIEK 231 >gi|237665467|ref|ZP_04525455.1| two-component response regulator [Clostridium butyricum E4 str. BoNT E BL5262] gi|237658414|gb|EEP55966.1| two-component response regulator [Clostridium butyricum E4 str. BoNT E BL5262] Length = 228 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 39/220 (17%), Positives = 90/220 (40%), Gaps = 3/220 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 L++D ++ L +G ++ + + + + D++ I+ L Sbjct: 4 IFLVEDDKVIAKNLTLLLNSEGFTVTHAPTRGDAISMLAQNKFDLALIDISL--PDGNGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + I+ +P+I ++ + + + G DD + KP RE++AR+ R+ + Sbjct: 62 TVCTEIKEMMNIPVIFLTASGDESSVVTGLNMGADDYITKPFRPRELIARIKNALRKSES 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 E + V + + G L E R+L ++N + +T++ ++ Sbjct: 122 FGTNFEIRGLYVDTVSGIVKKNGNEVFLSALEYRLLLVFISNPKSIITRTKLLDELWDAA 181 Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 E V +N + +I +LR+K+ + + + R GY + Sbjct: 182 GEFVNDNTLTVYIKRLREKIENDPADPQIILTVRGTGYRL 221 >gi|111023287|ref|YP_706259.1| response regulator, two-component system [Rhodococcus jostii RHA1] gi|226365794|ref|YP_002783577.1| two-component response regulator MtrA [Rhodococcus opacus B4] gi|110822817|gb|ABG98101.1| response regulator, two-component system [Rhodococcus jostii RHA1] gi|226244284|dbj|BAH54632.1| two-component response regulator MtrA [Rhodococcus opacus B4] Length = 225 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 43/220 (19%), Positives = 87/220 (39%), Gaps = 5/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + +G R D+ ++ L G + Sbjct: 5 ILVVDDDTALAEMLTIVLRGEGFDPYVVGDGTQALTAVRETRPDLVLLDLML--PGMNGI 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R++RA S VP++ ++ + +SG DD + KP +E++ARV A RR + Sbjct: 63 DVCRVLRADSGVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRRTED 122 Query: 122 SNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 I + E+ L E +L L + + + ++G Sbjct: 123 EPAELLSIADIVIDVPAHKVSRGEELISLTPLEFDLLVALARKPRQVFTREVLLEQVWG- 181 Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219 + A + +V H+ +LR K+ + + V + R +GY Sbjct: 182 YRHAADTRLVNVHVQRLRAKVETDPENPEVVLTVRGVGYK 221 >gi|78187074|ref|YP_375117.1| two component transcriptional regulator [Chlorobium luteolum DSM 273] gi|78166976|gb|ABB24074.1| two component transcriptional regulator, winged helix family [Chlorobium luteolum DSM 273] Length = 232 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 47/220 (21%), Positives = 95/220 (43%), Gaps = 4/220 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + ++ +++ E L S D+ I+ L + Sbjct: 3 LLIIEDEPGIARFLKEGLEEEHFAVDTAFDGESGLELGMSNDYDLCLIDWML--PKLSGI 60 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +R A S VP+I ++ +L + +G DD V KP E+LAR+ A R+ Sbjct: 61 EVCRQLRKAGSAVPVIFLTARDTLDDVVFGLGAGADDYVKKPFAFEELLARIRARLRQNT 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + G + + + L +E +LEYL+ N + +++I ++ + Sbjct: 121 PTTGPLTAGALWLDPETHRAGCNRHDLTLTPKEFALLEYLLRNLDRVCTRSRIIEHVWDI 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + +V++ +++ LR+KL + + R +GY I Sbjct: 181 H-FDADTSVIDVYVNFLRRKLEAAGCTGLIKTVRGVGYVI 219 >gi|328949663|ref|YP_004366998.1| two component transcriptional regulator, winged helix family [Marinithermus hydrothermalis DSM 14884] gi|328449987|gb|AEB10888.1| two component transcriptional regulator, winged helix family [Marinithermus hydrothermalis DSM 14884] Length = 225 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 42/219 (19%), Positives = 88/219 (40%), Gaps = 4/219 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + + G + + D+ ++ L + Sbjct: 6 ILVIEDDPEIARLLELELCEAGFEMIWAPNGMQGLVALRERSPDLVILDLGL--PDLEGG 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R + ++P+I ++ +++ ++ G DD V KP H E++AR+ R + Sbjct: 64 EIARRAKQAGEIPIIVLTAADAVERKVELLSGGADDYVTKPFHPAELIARIQVQLRHKEG 123 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 R + + L +E +L L + GK ++ +I ++G Sbjct: 124 GEVRQVDALLVHLGKR-QVHFEEREVRLSPKEFDLLALLASRPGKVFSREEIERHLWGKP 182 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 E NVV+ H++ LR KLR + + + R +GY++ Sbjct: 183 LEH-SSNVVDVHVANLRAKLREAGAYGYLRTVRGVGYAL 220 >gi|260437006|ref|ZP_05790822.1| DNA-binding response regulator ResD [Butyrivibrio crossotus DSM 2876] gi|292810315|gb|EFF69520.1| DNA-binding response regulator ResD [Butyrivibrio crossotus DSM 2876] Length = 222 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 46/221 (20%), Positives = 97/221 (43%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + ++ +G + E + S D+ I ++ Sbjct: 5 ILVVDDESRIRKIIRDFLVREGYVVCEAEDGEAALDIFCSNN-DIDLIIMDVMMPKMDGW 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120 +L + +R S+VP++ ++ Q L F+ GVD+ ++KP + + ARV A + R Sbjct: 64 QLCKEVRKLSKVPILMLTAKSEEQDELKGFELGVDEYISKPFSPKILTARVNALLRRTTG 123 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + I V + G+ L +E +L Y M NRG +++ +I + ++ Sbjct: 124 DNEEILDIAGITVNKIAHTVTIDGKEIDLSFKEFELLTYFMENRGVALSREKILNNVW-N 182 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +D + +++H+ KLR K+ K + + +GY + Sbjct: 183 YDYYGDARTIDTHVKKLRSKMGEKG--KFISTIWGMGYKFE 221 >gi|228908986|ref|ZP_04072816.1| DNA-binding response regulator [Bacillus thuringiensis IBL 200] gi|228850708|gb|EEM95532.1| DNA-binding response regulator [Bacillus thuringiensis IBL 200] Length = 223 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 42/221 (19%), Positives = 93/221 (42%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L DD +++ +G + + + + ++ ++ Sbjct: 4 ILLADDDKHIRELLHYHLQKEGFKVFEAEDGKVAQGVLEKENIHLAIVDIM--MPFVDGY 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L IR + +P+I ++ L F SG DD + KP E++ R+ A+ RR ++ Sbjct: 62 TLCEEIRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQM 121 Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + T + G + + G+ LP +E +L L + G+ ++ ++ ++G+ Sbjct: 122 LSADIITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D +E V+ H+ +LR + + + + R LGY ++ Sbjct: 182 -DFEGDERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 221 >gi|15610382|ref|NP_217763.1| two component sensory transduction transcriptional regulatory protein MTRA [Mycobacterium tuberculosis H37Rv] gi|31794426|ref|NP_856919.1| two component sensory transduction transcriptional regulatory protein MTRA [Mycobacterium bovis AF2122/97] gi|121639135|ref|YP_979359.1| two component sensory transduction transcriptional regulatory protein mtrA [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148663109|ref|YP_001284632.1| two component sensory transduction transcriptional regulatory protein MtrA [Mycobacterium tuberculosis H37Ra] gi|148824448|ref|YP_001289202.1| two component system sensor transduction transcriptional regulatory protein mtrA [Mycobacterium tuberculosis F11] gi|167966684|ref|ZP_02548961.1| DNA-binding response regulator MtrA [Mycobacterium tuberculosis H37Ra] gi|215405258|ref|ZP_03417439.1| two component system sensor transduction transcriptional regulatory protein mtrA [Mycobacterium tuberculosis 02_1987] gi|215413124|ref|ZP_03421825.1| two component system sensor transduction transcriptional regulatory protein mtrA [Mycobacterium tuberculosis 94_M4241A] gi|215428728|ref|ZP_03426647.1| two component system sensor transduction transcriptional regulatory protein mtrA [Mycobacterium tuberculosis T92] gi|215432210|ref|ZP_03430129.1| two component system sensor transduction transcriptional regulatory protein mtrA [Mycobacterium tuberculosis EAS054] gi|215447549|ref|ZP_03434301.1| two component system sensor transduction transcriptional regulatory protein mtrA [Mycobacterium tuberculosis T85] gi|218755032|ref|ZP_03533828.1| two component system sensor transduction transcriptional regulatory protein mtrA [Mycobacterium tuberculosis GM 1503] gi|219559305|ref|ZP_03538381.1| two component system sensor transduction transcriptional regulatory protein mtrA [Mycobacterium tuberculosis T17] gi|224991628|ref|YP_002646317.1| two component sensory transduction transcriptional regulatory protein [Mycobacterium bovis BCG str. Tokyo 172] gi|253800288|ref|YP_003033289.1| two component system transcriptional regulator mtrA [Mycobacterium tuberculosis KZN 1435] gi|254233859|ref|ZP_04927184.1| two component sensory transduction transcriptional regulatory protein mtrA [Mycobacterium tuberculosis C] gi|254365870|ref|ZP_04981915.1| two component sensory transduction transcriptional regulatory protein mtrA [Mycobacterium tuberculosis str. Haarlem] gi|254552349|ref|ZP_05142796.1| two component system transcriptional regulator mtrA [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260188294|ref|ZP_05765768.1| two component system transcriptional regulator mtrA [Mycobacterium tuberculosis CPHL_A] gi|260202407|ref|ZP_05769898.1| two component system transcriptional regulator mtrA [Mycobacterium tuberculosis T46] gi|260206597|ref|ZP_05774088.1| two component system transcriptional regulator mtrA [Mycobacterium tuberculosis K85] gi|289444827|ref|ZP_06434571.1| two component system transcriptional regulator mtrA [Mycobacterium tuberculosis T46] gi|289448934|ref|ZP_06438678.1| two component system transcriptional regulator mtrA [Mycobacterium tuberculosis CPHL_A] gi|289555524|ref|ZP_06444734.1| two component system transcriptional regulator mtrA [Mycobacterium tuberculosis KZN 605] gi|289571473|ref|ZP_06451700.1| two component system transcriptional regulator mtrA [Mycobacterium tuberculosis T17] gi|289575966|ref|ZP_06456193.1| two component system transcriptional regulator mtrA [Mycobacterium tuberculosis K85] gi|289747064|ref|ZP_06506442.1| DNA-binding response regulator MtrA [Mycobacterium tuberculosis 02_1987] gi|289751940|ref|ZP_06511318.1| two component system transcriptional regulator mtrA [Mycobacterium tuberculosis T92] gi|289755369|ref|ZP_06514747.1| DNA-binding response regulator MtrA [Mycobacterium tuberculosis EAS054] gi|289759386|ref|ZP_06518764.1| DNA-binding response regulator MtrA [Mycobacterium tuberculosis T85] gi|289763434|ref|ZP_06522812.1| two component sensory transduction transcriptional regulatory protein mtrA [Mycobacterium tuberculosis GM 1503] gi|294993814|ref|ZP_06799505.1| two component system transcriptional regulator mtrA [Mycobacterium tuberculosis 210] gi|297635899|ref|ZP_06953679.1| two component system transcriptional regulator mtrA [Mycobacterium tuberculosis KZN 4207] gi|297732896|ref|ZP_06962014.1| two component system transcriptional regulator mtrA [Mycobacterium tuberculosis KZN R506] gi|298526722|ref|ZP_07014131.1| two component system sensor transduction transcriptional regulatory protein mtrA [Mycobacterium tuberculosis 94_M4241A] gi|306777575|ref|ZP_07415912.1| two component system transcriptional regulator mtrA [Mycobacterium tuberculosis SUMu001] gi|306782296|ref|ZP_07420633.1| two component system transcriptional regulator mtrA [Mycobacterium tuberculosis SUMu002] gi|306795007|ref|ZP_07433309.1| two component system transcriptional regulator mtrA [Mycobacterium tuberculosis SUMu005] gi|306799205|ref|ZP_07437507.1| two component system transcriptional regulator mtrA [Mycobacterium tuberculosis SUMu006] gi|306805053|ref|ZP_07441721.1| two component system transcriptional regulator mtrA [Mycobacterium tuberculosis SUMu008] gi|306809239|ref|ZP_07445907.1| two component system transcriptional regulator mtrA [Mycobacterium tuberculosis SUMu007] gi|306969342|ref|ZP_07482003.1| two component system transcriptional regulator mtrA [Mycobacterium tuberculosis SUMu009] gi|306973694|ref|ZP_07486355.1| two component system transcriptional regulator mtrA [Mycobacterium tuberculosis SUMu010] gi|307081403|ref|ZP_07490573.1| two component system transcriptional regulator mtrA [Mycobacterium tuberculosis SUMu011] gi|313660228|ref|ZP_07817108.1| two component system transcriptional regulator mtrA [Mycobacterium tuberculosis KZN V2475] gi|2072713|emb|CAB08347.1| TWO COMPONENT SENSORY TRANSDUCTION TRANSCRIPTIONAL REGULATORY PROTEIN MTRA [Mycobacterium tuberculosis H37Rv] gi|31620022|emb|CAD95366.1| TWO COMPONENT SENSORY TRANSDUCTION TRANSCRIPTIONAL REGULATORY PROTEIN MTRA [Mycobacterium bovis AF2122/97] gi|121494783|emb|CAL73264.1| Two component sensory transduction transcriptional regulatory protein mtrA [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124599388|gb|EAY58492.1| two component sensory transduction transcriptional regulatory protein mtrA [Mycobacterium tuberculosis C] gi|134151383|gb|EBA43428.1| two component sensory transduction transcriptional regulatory protein mtrA [Mycobacterium tuberculosis str. Haarlem] gi|148507261|gb|ABQ75070.1| two component sensory transduction transcriptional regulatory protein MtrA [Mycobacterium tuberculosis H37Ra] gi|148722975|gb|ABR07600.1| two component system sensor transduction transcriptional regulatory protein mtrA [Mycobacterium tuberculosis F11] gi|224774743|dbj|BAH27549.1| two component sensory transduction transcriptional regulatory protein [Mycobacterium bovis BCG str. Tokyo 172] gi|253321791|gb|ACT26394.1| two component system transcriptional regulator mtrA [Mycobacterium tuberculosis KZN 1435] gi|289417746|gb|EFD14986.1| two component system transcriptional regulator mtrA [Mycobacterium tuberculosis T46] gi|289421892|gb|EFD19093.1| two component system transcriptional regulator mtrA [Mycobacterium tuberculosis CPHL_A] gi|289440156|gb|EFD22649.1| two component system transcriptional regulator mtrA [Mycobacterium tuberculosis KZN 605] gi|289540397|gb|EFD44975.1| two component system transcriptional regulator mtrA [Mycobacterium tuberculosis K85] gi|289545227|gb|EFD48875.1| two component system transcriptional regulator mtrA [Mycobacterium tuberculosis T17] gi|289687592|gb|EFD55080.1| DNA-binding response regulator MtrA [Mycobacterium tuberculosis 02_1987] gi|289692527|gb|EFD59956.1| two component system transcriptional regulator mtrA [Mycobacterium tuberculosis T92] gi|289695956|gb|EFD63385.1| DNA-binding response regulator MtrA [Mycobacterium tuberculosis EAS054] gi|289710940|gb|EFD74956.1| two component sensory transduction transcriptional regulatory protein mtrA [Mycobacterium tuberculosis GM 1503] gi|289714950|gb|EFD78962.1| DNA-binding response regulator MtrA [Mycobacterium tuberculosis T85] gi|298496516|gb|EFI31810.1| two component system sensor transduction transcriptional regulatory protein mtrA [Mycobacterium tuberculosis 94_M4241A] gi|308214117|gb|EFO73516.1| two component system transcriptional regulator mtrA [Mycobacterium tuberculosis SUMu001] gi|308325047|gb|EFP13898.1| two component system transcriptional regulator mtrA [Mycobacterium tuberculosis SUMu002] gi|308336786|gb|EFP25637.1| two component system transcriptional regulator mtrA [Mycobacterium tuberculosis SUMu005] gi|308340620|gb|EFP29471.1| two component system transcriptional regulator mtrA [Mycobacterium tuberculosis SUMu006] gi|308344561|gb|EFP33412.1| two component system transcriptional regulator mtrA [Mycobacterium tuberculosis SUMu007] gi|308348357|gb|EFP37208.1| two component system transcriptional regulator mtrA [Mycobacterium tuberculosis SUMu008] gi|308353194|gb|EFP42045.1| two component system transcriptional regulator mtrA [Mycobacterium tuberculosis SUMu009] gi|308356934|gb|EFP45785.1| two component system transcriptional regulator mtrA [Mycobacterium tuberculosis SUMu010] gi|308360935|gb|EFP49786.1| two component system transcriptional regulator mtrA [Mycobacterium tuberculosis SUMu011] gi|323718115|gb|EGB27297.1| two component system transcriptional regulator mtrA [Mycobacterium tuberculosis CDC1551A] gi|326902526|gb|EGE49459.1| two component system transcriptional regulator mtrA [Mycobacterium tuberculosis W-148] gi|328460023|gb|AEB05446.1| two component system transcriptional regulator mtrA [Mycobacterium tuberculosis KZN 4207] Length = 228 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 43/220 (19%), Positives = 85/220 (38%), Gaps = 5/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A + + + +G R D+ ++ L G + Sbjct: 8 ILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDLML--PGMNGI 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R++RA S VP++ ++ + +SG DD + KP +E++ARV A RR Sbjct: 66 DVCRVLRADSGVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRRNDD 125 Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + GE L E +L L + + + ++G Sbjct: 126 EPAEMLSIADVEIDVPAHKVTRNGEQISLTPLEFDLLVALARKPRQVFTRDVLLEQVWG- 184 Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219 + + +V H+ +LR K+ + V + R +GY Sbjct: 185 YRHPADTRLVNVHVQRLRAKVEKDPENPTVVLTVRGVGYK 224 >gi|257440725|ref|ZP_05616480.1| phosphate regulon transcriptional regulatory protein Phob [Faecalibacterium prausnitzii A2-165] gi|257196820|gb|EEU95104.1| phosphate regulon transcriptional regulatory protein Phob [Faecalibacterium prausnitzii A2-165] Length = 230 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 33/222 (14%), Positives = 85/222 (38%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + DG + + D+ ++ L Sbjct: 4 ILIVEDDSFLNKMLAYNLTADGYGVTSALNARTAADAIRQREFDLVLLDINL--PDGNGF 61 Query: 62 ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH---REILARVAAIYR 117 EL ++I HS +I ++ + ++ G D + KP + + + A+ Sbjct: 62 ELCKLIKPQHSDTIVIFLTANDQESDQIRGYEVGAVDYITKPFVIGALQRKIKAMFAMLE 121 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 K + + + G + + + + G+ L E ++L N + + + Q+ + Sbjct: 122 HHKPAKDIYDDGRLFLDFSEQTASLNGKPLTLSPMEYKMLNLFRKNPRQVLTRGQLLEKL 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 + + + V+E+ + + IS++R K+ G + + +GY Sbjct: 182 WDIDERFVDEHTLTTSISRIRSKIEADGGAPYIKTVYGMGYQ 223 >gi|229121460|ref|ZP_04250687.1| Two-component response regulator vanR [Bacillus cereus 95/8201] gi|228661924|gb|EEL17537.1| Two-component response regulator vanR [Bacillus cereus 95/8201] Length = 242 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 40/229 (17%), Positives = 83/229 (36%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +G + + E + ++ ++ ++ + Sbjct: 16 ILIVDDDQDIVRFMNVNLMQEGFKVFSAYNGEEALEIINNNSIQLAILDIM--MPQMDGI 73 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARVA 113 EL R IR +P+I +S S + F +G DD + KP E Sbjct: 74 ELCRRIREKHSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 133 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 ++V + + + R + GE L + E IL + A + + +I Sbjct: 134 FNQHAVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYDILFLMAAAKNRVFTIEEI 193 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + +++ N V HI++LR K+ + + +GY I+ Sbjct: 194 YESVWKERAYE-SNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIE 241 >gi|194366914|ref|YP_002029524.1| winged helix family two component transcriptional regulator [Stenotrophomonas maltophilia R551-3] gi|194349718|gb|ACF52841.1| two component transcriptional regulator, winged helix family [Stenotrophomonas maltophilia R551-3] Length = 245 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 48/225 (21%), Positives = 95/225 (42%), Gaps = 9/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L++D + + + G +++ + ++ ++ L G ++ Sbjct: 18 LLVEDDRRLAELVSDYLHEHGFAVQHVARGDLAGAACRQHAPELVVLDLML--PGLGGID 75 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR+ S VP++ ++ + +SG DD V+KP+ R +LAR+ A+ RR S Sbjct: 76 VCRQIRSFSDVPILMLTACEDDIEQVLGLESGADDYVHKPVEPRLLLARLRALLRRRHGS 135 Query: 123 NNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + RD ++ G L E IL L + G+ +++ QI A+ Sbjct: 136 GSTGSPCRLMHGGLLIDRMQRDVQLHGHAVELGTTEFEILWLLASQPGQILSRDQILQAV 195 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 G+ + V+ I KLR+KL + + + GY + Sbjct: 196 RGIG-FDGLDRSVDVSIGKLRRKLGDDAREPRRIKTVWGRGYQFN 239 >gi|150389477|ref|YP_001319526.1| two component transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149949339|gb|ABR47867.1| two component transcriptional regulator, winged helix family [Alkaliphilus metalliredigens QYMF] Length = 237 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 51/226 (22%), Positives = 92/226 (40%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 ++IDD + + +G+ + L D+ ++ L Sbjct: 10 ILIIDDEEDILKLLSTVLKREGLDDIYTAGDANSGYALFEKEDPDIILLDIML--PDGDG 67 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAI 115 E+ + IRA S VP++ IS + F G DD + KP +E+ R Sbjct: 68 YEICKRIRAISNVPILFISAKTEEIDRVLGFALGGDDYITKPFSPKEVAYRVKASLRRTN 127 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 R K + E GP ++ + G++ L +E +I Y+ N + ++K QI S Sbjct: 128 QRNEKYQDTIYELGPFKIDEKKIEVIKNGQLVELLPKEYKIFLYMTKNPNQILSKEQISS 187 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 ++G D +N + HI +LR+K+ + + +K+ LGY Sbjct: 188 KVWGE-DYIGFDNTIMVHIRRLREKIEDDPSNPKHIINKKGLGYKF 232 >gi|30263183|ref|NP_845560.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47528548|ref|YP_019897.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49186033|ref|YP_029285.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|65320511|ref|ZP_00393470.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bacillus anthracis str. A2012] gi|167632499|ref|ZP_02390826.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|167637046|ref|ZP_02395326.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170684879|ref|ZP_02876104.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|170705287|ref|ZP_02895752.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|177650137|ref|ZP_02933138.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190564781|ref|ZP_03017702.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|196032201|ref|ZP_03099615.1| DNA-binding response regulator [Bacillus cereus W] gi|218904374|ref|YP_002452208.1| DNA-binding response regulator [Bacillus cereus AH820] gi|225865180|ref|YP_002750558.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|227813952|ref|YP_002813961.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228915829|ref|ZP_04079405.1| DNA-binding response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228928291|ref|ZP_04091332.1| DNA-binding response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228934497|ref|ZP_04097332.1| DNA-binding response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|229046908|ref|ZP_04192540.1| DNA-binding response regulator [Bacillus cereus AH676] gi|229602195|ref|YP_002867447.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|254685790|ref|ZP_05149649.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254723197|ref|ZP_05184985.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254738260|ref|ZP_05195963.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254742572|ref|ZP_05200257.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254752575|ref|ZP_05204611.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|254761091|ref|ZP_05213115.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|300118413|ref|ZP_07056159.1| DNA-binding response regulator [Bacillus cereus SJ1] gi|30257817|gb|AAP27046.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47503696|gb|AAT32372.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49179960|gb|AAT55336.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|167514553|gb|EDR89919.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|167532797|gb|EDR95433.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170130142|gb|EDS99004.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|170671139|gb|EDT21877.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|172084089|gb|EDT69148.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190564098|gb|EDV18062.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|195994952|gb|EDX58906.1| DNA-binding response regulator [Bacillus cereus W] gi|218537351|gb|ACK89749.1| DNA-binding response regulator [Bacillus cereus AH820] gi|225786724|gb|ACO26941.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|227006224|gb|ACP15967.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228724453|gb|EEL75778.1| DNA-binding response regulator [Bacillus cereus AH676] gi|228825134|gb|EEM70931.1| DNA-binding response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228831338|gb|EEM76934.1| DNA-binding response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228843810|gb|EEM88883.1| DNA-binding response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229266603|gb|ACQ48240.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|298724198|gb|EFI64894.1| DNA-binding response regulator [Bacillus cereus SJ1] Length = 225 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 42/221 (19%), Positives = 93/221 (42%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L DD +++ +G + + + + ++ ++ Sbjct: 6 ILLADDDKHIRELLHYHLQKEGFKVFEAEDGKVAQEVLEKENIHLAIVDIM--MPFVDGY 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L IR + +P+I ++ L F SG DD + KP E++ R+ A+ RR ++ Sbjct: 64 TLCEEIRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQM 123 Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + T + G + + G+ LP +E +L L + G+ ++ ++ ++G+ Sbjct: 124 LSADIITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM 183 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D +E V+ H+ +LR + + + + R LGY ++ Sbjct: 184 -DFEGDERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 223 >gi|332289161|ref|YP_004420013.1| transcriptional regulator PhoB [Gallibacterium anatis UMN179] gi|330432057|gb|AEC17116.1| transcriptional regulator PhoB [Gallibacterium anatis UMN179] Length = 229 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 37/221 (16%), Positives = 87/221 (39%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++++D +++ + + + + ++ L G G Sbjct: 5 ILIVEDERAIREMVALYLLKQNYEVIEAEDYQSAVNRL-EEQPQLILLDWMLPGRSGIMF 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-HHREILARVAAIYRRL 119 +E + +++P+I ++ + + + ++G DD + KP + A R Sbjct: 64 IEYLKKQEQTAKIPIIMLTARSAEEDCITCLNAGADDYITKPFSPKILLARIEALWRRSY 123 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + +++ + V+ + L E ++L +LM + K ++ Q+ + I+G Sbjct: 124 DPPSQIVSFENLQIDQQAQRVSVENQFVELSATEYKLLLFLMTHPEKVYSREQLLNHIWG 183 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D VE+ V+S+I +LR+ L V + R GY Sbjct: 184 -DDIYVEDRTVDSYIRRLRRSLEPFQADRYVQTVRGFGYRF 223 >gi|326442416|ref|ZP_08217150.1| putative two-component systen response regulator [Streptomyces clavuligerus ATCC 27064] Length = 342 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 49/232 (21%), Positives = 94/232 (40%), Gaps = 16/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V++ +G + E S R D+ ++ L Sbjct: 109 ILIVDDEPAVREALQRSLAFEGYATEVAVDGIDALAKAESYRPDLLVLDI--QMPRMDGL 166 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 R +RA S VP++ ++ ++ + D+G DD + KP E+ AR+ A+ RR Sbjct: 167 TAARRLRATGSTVPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSS 226 Query: 121 VS------------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 + + +R+ R+ L R E +LE L+A+ + + Sbjct: 227 YASAAGDTASGDDGHEILSFADLRMDLATREVHRGERAVELTRTEFTLLELLLAHPRQVL 286 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + QI +++G FD N ++ ++ LR+K V + R +GY + Sbjct: 287 TREQILKSVWG-FDFEPTSNSLDVYVMYLRRKTEAGGEPRIVHTVRGVGYVL 337 >gi|303256046|ref|ZP_07342068.1| alkaline phosphatase synthesis transcriptional regulatory protein [Streptococcus pneumoniae BS455] gi|302596962|gb|EFL64086.1| alkaline phosphatase synthesis transcriptional regulatory protein [Streptococcus pneumoniae BS455] Length = 235 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 42/230 (18%), Positives = 88/230 (38%), Gaps = 15/230 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L+DD V +G S + + L + D ++ L +E Sbjct: 6 LLVDDEEHVLKLLDYHLSKEGFSTQLVTNGRKALALAETEPFDFILLDIML--PQLDGME 63 Query: 63 LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILAR 111 + + +RA + P++ +S + + G DD + KP R Sbjct: 64 VCKRLRAKGVKTPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELLARVKAVLRRTKG 123 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 ++++ G ++V+ + + ++ L +E +L YLM + + + Sbjct: 124 EQEGDDSDNIADDSWLFGTLKVYPERHEVYKANKLLSLTPKEFELLLYLMKHPNMTLTRE 183 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++ I+G +D E +V+ HI KLR+K+ + + + R GY Sbjct: 184 RLLERIWG-YDFGQETRLVDVHIGKLREKIEDNPKAPQFIRTIRGYGYKF 232 >gi|182419686|ref|ZP_02950927.1| transcriptional regulatory protein ResD [Clostridium butyricum 5521] gi|237665577|ref|ZP_04525565.1| transcriptional regulatory protein ResD [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376423|gb|EDT74004.1| transcriptional regulatory protein ResD [Clostridium butyricum 5521] gi|237658524|gb|EEP56076.1| transcriptional regulatory protein ResD [Clostridium butyricum E4 str. BoNT E BL5262] Length = 229 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 47/227 (20%), Positives = 94/227 (41%), Gaps = 9/227 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD V + +DG+ E D+ ++ Sbjct: 4 ILICDDNEAVHETIGTYLKNDGMIYISAFDGEEALEKFKKENVDLVILDLM--MPKIFGT 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 E+ + IR S+VP+I ++ + + G DD + KP RE++AR+ I+RR+ Sbjct: 62 EVCKEIRKISEVPIIMLTAKGEEIDKIIGLEIGADDYIVKPFSPREVVARIKTIFRRVNS 121 Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + + D + + GE + +E IL + N G+ +++ +I Sbjct: 122 KSDLLPNRKIFSYENLNIDLDKYETVINGEKIDITPKECEILYLIATNEGRVLSREEILD 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 ++G +D + VV++ I +LRKKL + + + +GY + Sbjct: 182 KVWG-YDYFGDTRVVDTQIKRLRKKLPEEDEKWVIKTVYGIGYKFEV 227 >gi|118477336|ref|YP_894487.1| two-component response regulator [Bacillus thuringiensis str. Al Hakam] gi|118416561|gb|ABK84980.1| two-component response regulator [Bacillus thuringiensis str. Al Hakam] Length = 247 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 40/229 (17%), Positives = 84/229 (36%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + A +G + ++ E + ++ ++ ++ + Sbjct: 21 ILIVDDDQDIVRFVNANLMQEGFKVLSAHNGEEALKIINNNSIQLAILDIM--MPHMDGI 78 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARVA 113 EL R IR +P++ +S S + F +G DD + KP E Sbjct: 79 ELCRRIREKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 138 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 ++V + + + R + GE L + E IL + A + +I Sbjct: 139 FNQNAVQVIEKKISIRGLEIDEVSRTVMLYGETINLTKTEYDILYLMAAAENRVFTIEEI 198 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + +++ N V HI++LR K+ + + +GY I+ Sbjct: 199 YESVWKERAYE-SNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIE 246 >gi|67921356|ref|ZP_00514875.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Crocosphaera watsonii WH 8501] gi|67857473|gb|EAM52713.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Crocosphaera watsonii WH 8501] Length = 225 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 47/221 (21%), Positives = 97/221 (43%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D A + +G ++ N + D+ ++ L G + Sbjct: 6 ILLVEDEAKLAQFIELELKYEGYNVTVVNDGLSGLSNARESDPDLILLDWML--PGMSGV 63 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ + +R P+I ++ + + D+G DD + KP + E+LARV A RR + Sbjct: 64 DICKRLRQTGNNVPIILLTAKDDIGDRVAGLDAGADDYIVKPFNLEELLARVRANLRRNQ 123 Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + S+ R + L +E +LEYLM++ + + + QI ++G Sbjct: 124 QDDPDLLEFLDLTLNSNTRQVFRGDRLIELTAKEFDLLEYLMSHPKQVLTRDQILERVWG 183 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D + N++E ++ LR KL + + + R +GY + Sbjct: 184 -YDFMGDSNIIEVYVRYLRLKLEAEKEKRIIQTVRGVGYVL 223 >gi|38233451|ref|NP_939218.1| putative two component system response regulator [Corynebacterium diphtheriae NCTC 13129] gi|38199711|emb|CAE49371.1| Putative two component system response regulator [Corynebacterium diphtheriae] Length = 230 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 47/226 (20%), Positives = 92/226 (40%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 V++DD V++ +G + + + ++ ++ L Sbjct: 3 IVVVDDEQAVRESLCRSLSFNGYEVHLAQDGVEALEVIEREQPELVILDVM--MPRMDGL 60 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA------ 114 E+ R +R + P++ ++ + + D+G DD + KP E+LARV + Sbjct: 61 EVCRTLRGSGDDRPILVLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLLRRAA 120 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 S +R+ D RD G L R E +L+ LMAN + +++ I Sbjct: 121 AESVGSGSQGELSFEDLRLNPDTRDVTRGGRPISLTRTEFALLQLLMANSRRVLSRASIL 180 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G +D N +E +I LR+K ++ + + R +GY + Sbjct: 181 EEVWG-YDFPTSGNALEVYIGYLRRKTESEGEPRLIHTVRGVGYVL 225 >gi|326389588|ref|ZP_08211154.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus JW 200] gi|325994303|gb|EGD52729.1| two component transcriptional regulator, winged helix family [Thermoanaerobacter ethanolicus JW 200] Length = 225 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 49/224 (21%), Positives = 89/224 (39%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD + G ++G ++ E D+ ++ L Sbjct: 4 LLIIDDEEMFVKGLKLSLEEEGFEVDTAYDGEKGLDKVRLGNYDLVILDIML--PKLDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYR 117 + R IR S +P+I ++ + + G DD + KP + RE++AR+ Sbjct: 62 SVCREIRTFSNIPIIMLTARGDDIDKIVGIEIGADDYLAKPFNTRELIARIRALLRRATN 121 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + G + + R +G+ L +E IL L +N GK K ++ I Sbjct: 122 PYIKRKDEIRRGELYINIPERAVYKRGKRIELTNKEFEILVLLASNPGKVYTKDKLLDLI 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 +G FD + N V H+ KLR+K+ + + +K GY + Sbjct: 182 WG-FDFYGDTNTVTVHVRKLREKIEDDPANPQYIFTKWGAGYYM 224 >gi|329929178|ref|ZP_08282964.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Paenibacillus sp. HGF5] gi|328936855|gb|EGG33290.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Paenibacillus sp. HGF5] Length = 256 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 43/232 (18%), Positives = 88/232 (37%), Gaps = 14/232 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++I+D + +G +E S D+ ++ L G + Sbjct: 19 LVIEDEPTLSRLLSYNLTQEGFQVEVEEHGTAGYEKASQHEYDLILLDVML--PGMNGFQ 76 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH----------REILAR 111 + +R++ P+I ++ + + + G DD + KP ++ Sbjct: 77 ILEKLRSNGITTPIIILTAKNAEEEVVQGLKMGADDYITKPFGVSELLARVSAVMRRVSG 136 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 A + N G + ++ + + + G+ L +E +L YL G + + Sbjct: 137 HADEVKTTDNQGNVISLGQLEIYPEKYEVRLGGQSINLRPKEFEVLLYLAKKPGVVLTRD 196 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 + + ++G FD + V+ H+S LRKKL +DS R +GY + N Sbjct: 197 DLMNVVWG-FDYIGGQRTVDVHVSSLRKKLELDPESAHIDSIRGVGYKLVVN 247 >gi|257870291|ref|ZP_05649944.1| transcriptional regulator [Enterococcus gallinarum EG2] gi|257804455|gb|EEV33277.1| transcriptional regulator [Enterococcus gallinarum EG2] Length = 235 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 49/230 (21%), Positives = 91/230 (39%), Gaps = 14/230 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +G + + L S D ++ L + Sbjct: 4 ILVVDDEPSIVTLLTFNLEKEGYQVVSAVDGKMGVDLALSEDFDFIILDVML--PQMDGI 61 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118 E+ + +R P++ ++ + + G DD + KP RE+LAR+ AI+RR Sbjct: 62 EITKKLRQEKIETPILVLTAKDDPIDRILGLEIGADDYLTKPFSPREVLARMKAIFRRLE 121 Query: 119 -------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + G I V+GE L +E +L Y M +G+ + + Sbjct: 122 PRGTADLSDQPAEMLQIGDILADLTNYQVSVKGEKIFLTPKEFELLIYFMKRKGRVIDRD 181 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + + I+ FD + +V+ HIS LR+KL + + + + R GY Sbjct: 182 TLLNRIW-NFDFDGQSRIVDVHISHLREKLERDPKHPEYLVTVRGFGYKF 230 >gi|239944331|ref|ZP_04696268.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239990784|ref|ZP_04711448.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] Length = 220 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 47/223 (21%), Positives = 93/223 (41%), Gaps = 10/223 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G +++ + S D+ ++ L G Sbjct: 3 LLIVEDEKRLAVSLARGLTAEGFAVDVVHDGLEGLHRASEGGYDLVILDIML--PGMNGY 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119 + +RA P++ ++ + D+G DD + KP + ++ARV A+ RR Sbjct: 61 RVCSNLRAAGHEVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARVRALLRRRG 120 Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + GP+R+ + R + L +E +LE L G+ V+K +I ++ Sbjct: 121 AGTAAPVLTVGPLRIDTAARRVIRGEDEIALTAKEFAVLEQLALRAGQVVSKAEILEHVW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 F + N+VE +IS LR+KL + + R GY ++ Sbjct: 181 D-FAYDGDPNIVEVYISTLRRKLGAAT----IRTVRGAGYRLE 218 >gi|225853570|ref|YP_002733803.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella melitensis ATCC 23457] gi|254718183|ref|ZP_05179994.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella sp. 83/13] gi|256262946|ref|ZP_05465478.1| transcriptional regulatory protein [Brucella melitensis bv. 2 str. 63/9] gi|265983140|ref|ZP_06095875.1| two component transcriptional regulator [Brucella sp. 83/13] gi|306837697|ref|ZP_07470566.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella sp. NF 2653] gi|225641935|gb|ACO01849.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella melitensis ATCC 23457] gi|263092820|gb|EEZ16995.1| transcriptional regulatory protein [Brucella melitensis bv. 2 str. 63/9] gi|264661732|gb|EEZ31993.1| two component transcriptional regulator [Brucella sp. 83/13] gi|306407255|gb|EFM63465.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella sp. NF 2653] gi|326410142|gb|ADZ67207.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella melitensis M28] gi|326539862|gb|ADZ88077.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella melitensis M5-90] Length = 228 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 43/224 (19%), Positives = 89/224 (39%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++D + +G ++ + E + D+ ++ L G + Sbjct: 7 IAVVEDEEALSVLLRYNLEAEGYQVDTMLRGDEAEIALRESVPDLLILDWML--PGVSGI 64 Query: 62 ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIY 116 EL R +R + P+I ++ + G DD V KP E+ + Sbjct: 65 ELCRRLRQRPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKAMLRR 124 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + ++ + G + + + + L E R+LEY M + G+ +++Q+ Sbjct: 125 ANPSILSHVLKVGDLLLDRQQHRVYRKEKEVHLGPTEFRLLEYFMMSPGRVFSRSQLLDG 184 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G D V++ V+ H+ +LRK + DP+ + R GYS Sbjct: 185 VWG-PDIYVDDRTVDVHVGRLRKAINVGRAADPIRTVRGAGYSF 227 >gi|148259467|ref|YP_001233594.1| two component transcriptional regulator [Acidiphilium cryptum JF-5] gi|326402691|ref|YP_004282772.1| two-component response regulator [Acidiphilium multivorum AIU301] gi|146401148|gb|ABQ29675.1| two component transcriptional regulator, winged helix family [Acidiphilium cryptum JF-5] gi|325049552|dbj|BAJ79890.1| two-component response regulator [Acidiphilium multivorum AIU301] Length = 227 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 49/222 (22%), Positives = 96/222 (43%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D V + + G ++E ++ ++ +S D ++ L G G L Sbjct: 3 ILVVEDDKDVGGFVVKGLREAGHTVEHADNGRDGLFMAASENFDAIILDRMLPG-GIDGL 61 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118 L +RA P++ +S + + +G DD + KP E+ A + Sbjct: 62 RLLETLRAQDNVTPVLFLSALGEVDDRVKGLKAGGDDYLTKPFAFAELLARVEAMARRGK 121 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + R G + + R + G+ L RE R+LEYLM + G+ V +T + ++ Sbjct: 122 GEGPATRLNVGDLEMDLLSRGVKRAGQKIDLQPREFRLLEYLMRHAGQVVTRTMLLEGVW 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + NV++ HIS+LR+K+ + + R GY + Sbjct: 182 D-YHFDPQTNVIDVHISRLRQKIDKPFDTPLLHTVRNAGYML 222 >gi|320450802|ref|YP_004202898.1| DNA-binding response regulator [Thermus scotoductus SA-01] gi|320150971|gb|ADW22349.1| DNA-binding response regulator [Thermus scotoductus SA-01] Length = 217 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 46/220 (20%), Positives = 93/220 (42%), Gaps = 8/220 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D V DG +++ S E L + D+ ++ L G Sbjct: 3 LLVVEDDPRVGALVQEALEADGYAVDWAKSAEEALGLVRAFPYDLVVLDVML--PGMDGF 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-HREILARVAAIYRRLK 120 +R ++P++ ++ + + + + G DD + KP H A + R Sbjct: 61 TFLEALRRQHKLPVLMLTARDATEDKVRGLEQGADDYLTKPFHLRELRARVRALLRRAHG 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + N G + + +G+ +G+ L RE +LE+L N G + + ++ Sbjct: 121 EAANLVRRGRLTLDLEGKRVYWEGKEVRLSGREYALLEFLALNAGGVFPREVLLEKVW-A 179 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +E V+ VV+ +I +LR+KL ++++R LGYS Sbjct: 180 GEEGVDPKVVDVYIYRLRQKLGQGA----IETERGLGYSF 215 >gi|228923572|ref|ZP_04086852.1| Two-component response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228836041|gb|EEM81402.1| Two-component response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 229 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 52/229 (22%), Positives = 91/229 (39%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++++ F + + + + + D+ ++ L Sbjct: 5 ILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVIFEQEKVDLVILDIML--PELDGW 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR-------EILARVAA 114 + R IR S+VP+I ++ TL F+ G DD V KP +L A Sbjct: 63 SVCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKA 122 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + L+ ++ I V R V L E IL Y M N+G + + Q+ Sbjct: 123 SKKPLENEDDTLSIHGIHVHFPSRTVTVDEADVSLTHTEFEILVYFMKNQGIVLTREQLI 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 S I+G ++ A ++ V SHI LR KL K + + GY + N Sbjct: 183 SRIWG-YEFAGDDRTVNSHIRNLRNKLGEK--AKYITTVVRTGYKFEGN 228 >gi|227889097|ref|ZP_04006902.1| DNA-binding response regulator [Lactobacillus johnsonii ATCC 33200] gi|268318621|ref|YP_003292277.1| two-component system response regulator [Lactobacillus johnsonii FI9785] gi|227850326|gb|EEJ60412.1| DNA-binding response regulator [Lactobacillus johnsonii ATCC 33200] gi|262396996|emb|CAX66010.1| two-component system response regulator [Lactobacillus johnsonii FI9785] Length = 235 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 44/226 (19%), Positives = 91/226 (40%), Gaps = 12/226 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G ++ E D+ ++ L + L Sbjct: 5 ILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVEEYDPDLMILDLML--PKKDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-------- 113 E+ R +R +P+I ++ + + + G DD V KP +RE++ARV Sbjct: 63 EVAREVRQTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRDL 122 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + G + + + E GE L RE +L YL + G+ + + + Sbjct: 123 TQKATEDDEDKNITIGNLVIMPEAYMVEKNGEKIELTHREFELLHYLAQHMGQVMTREHL 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGY 218 ++G +D + V+ + +LR+K+ + + ++R +GY Sbjct: 183 LQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSSPTILVTRRGVGY 227 >gi|167957496|ref|ZP_02544570.1| two component transcriptional regulator, winged helix family protein [candidate division TM7 single-cell isolate TM7c] Length = 224 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 51/223 (22%), Positives = 100/223 (44%), Gaps = 3/223 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + ++G +++ + + S+ D I+ + G L Sbjct: 3 ILIVEDEKKLARAISRTLKNEGYAIDIEYNSSEGYAMASTQPYDALIIDRMMPGDFSDGL 62 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119 ++ + +R P I ++ + D+G DD + KP E+LAR+ AI R Sbjct: 63 DMLKKLRKDGISTPAIVLTALGETSQKITGLDAGADDYLAKPFAIDELLARLRAILRRPK 122 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 K + G + + + R E + L +E +L+YLM + G+ ++K QI ++ Sbjct: 123 KAQPTILKVGKLHIDTTNRTVEFDNKKIDLTAKEYALLQYLMKSSGQTLSKEQIMEHVW- 181 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 FD + N VE++I LRKK+ K + + R +GY ++ Sbjct: 182 NFDADILPNTVEAYIKALRKKIDEKYKVKYIKTVRGIGYRLEE 224 >gi|296876253|ref|ZP_06900306.1| response regulator [Streptococcus parasanguinis ATCC 15912] gi|296432758|gb|EFH18552.1| response regulator [Streptococcus parasanguinis ATCC 15912] Length = 217 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 45/220 (20%), Positives = 91/220 (41%), Gaps = 7/220 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D L+++G + G + + L D+ ++ L L Sbjct: 3 ILIVEDEVLIREGMSDYLMECGYEIFEAGDGQEALDLFHREAPDLVLLDIQLPI--LNGL 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IR S VP++ ++ + L F D + +L + Sbjct: 61 EVLKTIRKTSSVPVLMLTAFHDEDYKLTAFGELADGY-LEKPFSLSLLKVRIEAIFKKLQ 119 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + G RV + + G+ + +E ILEYL+ + GK ++QI A++ Sbjct: 120 PSRVFTYGEARVDFESYTASLAGQAISMNAKELEILEYLLQHEGKARTRSQILDAVWKET 179 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +E + V++ +I +LRKKL D + + R +GY ++ Sbjct: 180 EEIPFDRVIDVYIKELRKKLEL----DCIVTVRNVGYKLE 215 >gi|295707319|ref|YP_003600394.1| two-component response regulator WalR [Bacillus megaterium DSM 319] gi|294804978|gb|ADF42044.1| two-component response regulator WalR [Bacillus megaterium DSM 319] Length = 235 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 47/228 (20%), Positives = 92/228 (40%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + + ++ ++ L K + Sbjct: 5 ILVVDDEKPIADILKFNLQKEGYEVFCAYDGVEALEKVEEVQPEMILLDIMLPQK--DGM 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R +P+I ++ S + + G DD V KP RE+LARV A RR + Sbjct: 63 EVCREVRKKYDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQ 122 Query: 122 SNNRAETGPIR--------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 E + D +GE L RE +L YL + G+ + + + Sbjct: 123 VAVPTEESETNEITIGALVIHPDAYIVSKRGETIELTHREFELLHYLAKHIGQVMTREHL 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++G +D + V+ + +LR+K+ + + ++R +GY + Sbjct: 183 LQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHPMWIVTRRGVGYYL 229 >gi|294814012|ref|ZP_06772655.1| Two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294326611|gb|EFG08254.1| Two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 340 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 49/232 (21%), Positives = 94/232 (40%), Gaps = 16/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V++ +G + E S R D+ ++ L Sbjct: 107 ILIVDDEPAVREALQRSLAFEGYATEVAVDGIDALAKAESYRPDLLVLDI--QMPRMDGL 164 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 R +RA S VP++ ++ ++ + D+G DD + KP E+ AR+ A+ RR Sbjct: 165 TAARRLRATGSTVPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSS 224 Query: 121 VS------------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 + + +R+ R+ L R E +LE L+A+ + + Sbjct: 225 YASAAGDTASGDDGHEILSFADLRMDLATREVHRGERAVELTRTEFTLLELLLAHPRQVL 284 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + QI +++G FD N ++ ++ LR+K V + R +GY + Sbjct: 285 TREQILKSVWG-FDFEPTSNSLDVYVMYLRRKTEAGGEPRIVHTVRGVGYVL 335 >gi|304394459|ref|ZP_07376380.1| phosphate regulon transcriptional regulatory protein PhoB [Ahrensia sp. R2A130] gi|303293369|gb|EFL87748.1| phosphate regulon transcriptional regulatory protein PhoB [Ahrensia sp. R2A130] Length = 233 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 42/224 (18%), Positives = 84/224 (37%), Gaps = 4/224 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++++D ++ + G + E + ++ L G G +V Sbjct: 9 ILVVEDEPSQQELLVYNLEKAGFRVVATGDGEDGVAAAQDENPALIVLDWMLPGLSGIEV 68 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118 R Q+P+I ++ + D+G DD + KP E+ R Sbjct: 69 CRQLRRDADTRQIPIIMLTARGEEGDKVRALDTGADDYIVKPYSVAELLARVRAHIRRAN 128 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 E G I++ E G L E R+L ++ G+ + + ++ Sbjct: 129 PAEVGEMLEHGDIKLDPSRMKVERSGTGIKLGPTEFRLLTVFLSRPGRVWTRESLLERVW 188 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 D +++ V+ H+ +LR+ L+ DP+ + R GYS+D+ Sbjct: 189 -EHDLDIDQRTVDVHVGRLRRALKVNGLADPIRTIRSAGYSLDF 231 >gi|229062519|ref|ZP_04199832.1| Two-component response regulator [Bacillus cereus AH603] gi|228716802|gb|EEL68493.1| Two-component response regulator [Bacillus cereus AH603] Length = 242 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 45/230 (19%), Positives = 90/230 (39%), Gaps = 11/230 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ ++G + E + + ++ + Sbjct: 15 ILIVDDEKEIRKLIAIYLKNEGYEVLQARDGEEGLEIVRKRDVHLIVLDIM--MPKIDGI 72 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + +R +++P+I +S + +G DD V KP + E++AR+ + RR Sbjct: 73 HMCMKVREIAEMPIIMLSAKTQDMDKILGLTTGADDYVAKPFNPLELIARIKSQLRRYMK 132 Query: 122 S-------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N E G I++ R + E L RE +LE L N+G + QI+ Sbjct: 133 MSGASVKDENVFEVGDIKINIATRQVIIANEEVKLTPREFEVLELLARNQGMVLNAEQIY 192 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223 ++ +N V HI K+R+K+ + + +GY I+ + Sbjct: 193 ERVWKEKAFQ-SDNTVMVHIRKIREKIEAIPRKPRYIKTIWGVGYKIEKD 241 >gi|168177609|ref|ZP_02612273.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|182670465|gb|EDT82439.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] Length = 225 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 44/224 (19%), Positives = 94/224 (41%), Gaps = 6/224 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD + + ++G ++ S QS D+ ++ L Sbjct: 5 ILVIDDEVKIIEVIKLYLENEGYTVIQATSGIEALKKQSEFNPDLLILDLML--PDISGE 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + IR S+VP+I ++ S + L+ + G DD + KP ++++A+V A+ +R+K Sbjct: 63 NVCERIRKESEVPIIMLTAKSSEDSILNGYSIGSDDYITKPFSPKQLVAKVNAVLKRVKG 122 Query: 122 SNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + + + E + L E +IL L N K ++ ++ I Sbjct: 123 NQCENLIFNNELIIDIVNKKVEYNNKEIILTASEYKILSILARNPNKIFSREELMDYI-S 181 Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 + + + ++++HI +R KL + + R +GY + Sbjct: 182 RDNICIYDRIIDTHIKNIRAKLDQDSKNPTYIKTIRGMGYRFNV 225 >gi|154503490|ref|ZP_02040550.1| hypothetical protein RUMGNA_01314 [Ruminococcus gnavus ATCC 29149] gi|153795590|gb|EDN78010.1| hypothetical protein RUMGNA_01314 [Ruminococcus gnavus ATCC 29149] Length = 224 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 49/222 (22%), Positives = 94/222 (42%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + S L + R V ++ L G Sbjct: 4 ILIVEDDMNINGLLKEALEKADYLCTQAFSGTEARMLLAMNRYSVVLLDLML--PGISGE 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IR P+I ++ ++ ++ SG DD V KP +E+LARVA RR++ Sbjct: 62 EVLQEIRKQGNTPVIILTAKDTIDDKVEVLQSGADDYVTKPFDIKEVLARVAVQIRRMEG 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFP---LPRRERRILEYLMANRGKRVAKTQIFSAIY 178 S + + D + V+ + + R+E ILE L+ + K +K +IF + Sbjct: 122 SFSEGNLVYQGLELDRENFCVRVDQTELPKITRQEFSILELLLKHPKKVFSKEEIFEYAW 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 E ++ HIS +RKK+++ + +++ +GY + Sbjct: 182 -EEAYMGETKTLDVHISNIRKKIKSVTSKEYIETIWGIGYRL 222 >gi|146298307|ref|YP_001192898.1| two component transcriptional regulator [Flavobacterium johnsoniae UW101] gi|146152725|gb|ABQ03579.1| two component transcriptional regulator, winged helix family [Flavobacterium johnsoniae UW101] Length = 227 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 40/225 (17%), Positives = 89/225 (39%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFL-IGKGEKV 60 +L+DD + + +G + ++ + ++ ++ + G + Sbjct: 8 ILLVDDEPDILEIVGYNLAQEGYQIVTASNGKDAIAKAQKELPELIIMDVMMAEMDGMEA 67 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117 E R I + V + ++ + + FD+G DD + KPI + ++++V + Sbjct: 68 CEHIRKIPELNNVIITFLTARSEDYSQVAGFDAGADDYITKPIKPKLLVSKVKALLRRLK 127 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 +V + G I + + LPR+E + L + GK + +I + Sbjct: 128 EQEVVTDTINVGGIEINREEYKIIKGNVEIALPRKEFELFYLLASKPGKVFKRDEILDKV 187 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +G + V ++ HI KLR+K+ D + + +GY + Sbjct: 188 WGN-EVVVGGRTIDVHIRKLREKIGE----DLFKTIKGVGYKFEV 227 >gi|328954969|ref|YP_004372302.1| two component transcriptional regulator, winged helix family [Coriobacterium glomerans PW2] gi|328455293|gb|AEB06487.1| two component transcriptional regulator, winged helix family [Coriobacterium glomerans PW2] Length = 232 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 45/229 (19%), Positives = 83/229 (36%), Gaps = 11/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D ++G + S S D++ ++ L Sbjct: 5 ILVVDDEKTITDLVGIYLENEGYEVTLCYSGSDAARAIFSQEFDLAVLDIML--PDIDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH--------REILARVA 113 EL R IRA P+I ++ + ++ G DD V KP ++ + Sbjct: 63 ELLRTIRADRTYPVIMLTARDTQIDKIEGLSLGADDYVVKPFRPLELVARVKAQLRRYTS 122 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 R + + + R V + E IL YL +RG+ V + Sbjct: 123 YGTRDSGEESPIISVNGLVINRAARSVTVDEKQVRCTPLEYSILLYLAEHRGRVVPVEDL 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 F A++ + N V HI LR+K+ + + + +GY+I+ Sbjct: 183 FRAVWDEKFLSSSNNTVMVHIRHLREKIGDDAQNPRFIKNIWGVGYTIE 231 >gi|310658325|ref|YP_003936046.1| transcription response regulator-like protein [Clostridium sticklandii DSM 519] gi|308825103|emb|CBH21141.1| transcription response regulator-like protein [Clostridium sticklandii] Length = 230 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 41/223 (18%), Positives = 82/223 (36%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + + +G S N L + D+ + L Sbjct: 5 ILIIEDEENISEIVAKYLQKEGYSTLIANDGIEGLALFRDSNPDLVISDVM--MPTIDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR S VP+I ++ L F++G DD V KP +E++ RV + +R Sbjct: 63 EVLREIRLISDVPVIMLTAKQEEVDRLKGFENGADDYVTKPFSPKELVRRVMVMLKRTYK 122 Query: 122 SNNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + + + + +E +I+ N + +++ Q+ + Sbjct: 123 TIENKQVLIEGELKLDLNKQKLYKNEVEIDITSKEFQIIYAFFKNPRQILSREQLIELAF 182 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 D + ++ HI K+R K+ + +K GY Sbjct: 183 SN-DFEGFDRTIDVHIKKIRHKIEEDTKNPKYLKTKYGAGYIF 224 >gi|255657538|ref|ZP_05402947.1| two-component response regulator [Clostridium difficile QCD-23m63] gi|296452790|ref|ZP_06894477.1| response regulator [Clostridium difficile NAP08] gi|296879958|ref|ZP_06903930.1| response regulator [Clostridium difficile NAP07] gi|296258338|gb|EFH05246.1| response regulator [Clostridium difficile NAP08] gi|296429072|gb|EFH14947.1| response regulator [Clostridium difficile NAP07] Length = 228 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 39/220 (17%), Positives = 89/220 (40%), Gaps = 3/220 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 L++D + I L +G + ++ + + D++ I+ L Sbjct: 4 IFLVEDDKAIAKNLILLLNSEGFIVTHVSTRSEALVEIAKNKFDLALIDISL--PDGNGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + I+ + +P+I ++ + + + G DD + KP RE++AR+ R+ Sbjct: 62 TICTEIKENQDIPVIFLTASGDESSVVTGLNMGADDYITKPFRPRELIARIRTALRKSGR 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + E + V + + G L E R+L ++N + + ++ ++ Sbjct: 122 FGSTFEICGLYVDTATGVVKKNGNEVFLSALEYRLLLVFISNPKSIITRVRLLDELWDAA 181 Query: 182 DEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 E V +N + +I +LR+K+ + + + R GY + Sbjct: 182 GEFVNDNTLTVYIKRLREKIEDDPSSPQIILTVRGTGYRL 221 >gi|168182122|ref|ZP_02616786.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|237793585|ref|YP_002861137.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] gi|182674487|gb|EDT86448.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|229261605|gb|ACQ52638.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] Length = 225 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 43/224 (19%), Positives = 95/224 (42%), Gaps = 6/224 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD + + ++G ++ S QS D+ ++ L Sbjct: 5 ILVIDDEVKIIEVIKLYLENEGYTVIQATSGIEALKKQSEFNPDLLILDLML--PDISGE 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + IR S+VP+I ++ S + L+ + G DD + KP ++++A+V A+ +R+K Sbjct: 63 NVCERIRKESEVPIIMLTAKSSEDSILNGYSIGTDDYITKPFSPKQLVAKVNAVLKRVKG 122 Query: 122 SNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + + + E + L E +IL L N + ++ ++ + I Sbjct: 123 NQCENLIFNNELIIDIVNKKVEYNNKEIILTASEYKILSILARNPNRIFSREELMNYI-S 181 Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 + + + ++++HI +R KL + + R +GY + Sbjct: 182 RDNICIYDRIIDTHIKNIRAKLDQDSKNPTYIKTIRGMGYRFNV 225 >gi|123443385|ref|YP_001007359.1| phosphate regulon transcriptional regulatory protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122090346|emb|CAL13214.1| phosphate regulon transcriptional regulatory protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 229 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 38/224 (16%), Positives = 91/224 (40%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A +++ + +G + S D+ ++ L G + Sbjct: 5 ILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRLSEPYPDLVLLDWML--PGGSGI 62 Query: 62 ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 + + ++ +P++ ++ + + + G DD + KP +E++AR+ A+ RR Sbjct: 63 QFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRR 122 Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + E + + + + E ++L + M + + ++ Q+ + Sbjct: 123 ISPMAVEEVIEMQGLSLDPSSHRVMANDQALDMGPTEFKLLHFFMTHPERVYSREQLLNY 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + VE+ V+ HI +LRK L V + R GY Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALEIDGHDRMVQTVRGTGYRF 225 >gi|39998208|ref|NP_954159.1| DNA-binding response regulator [Geobacter sulfurreducens PCA] gi|39985154|gb|AAR36509.1| DNA-binding response regulator [Geobacter sulfurreducens PCA] Length = 227 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 46/221 (20%), Positives = 84/221 (38%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + G + D+ ++ L G L Sbjct: 5 ILIVEDEEKIATLLRDYLRLAGFDVCCLAGGAEAAPWVREHAPDLVLLDLML--PGRDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + +R S VP+I I+ L + G DD + KP RE+ R Sbjct: 63 EICKDVRVFSSVPIIMITARIEEIDRLLGLELGADDYICKPFSPREV-VARVKAVLRRSG 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + + G L E ++L++L A+ G+ ++ Q+ IY Sbjct: 122 PGQTTALAGLVMDGACYRAALDGHELDLTAVEFKLLQFLAASPGRIYSRQQLMDRIY-PD 180 Query: 182 DEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + V + ++SHI KLRKK+ + G D + S +GY + Sbjct: 181 ERVVADRTIDSHIKKLRKKIADVAPGEDLIHSVYGVGYKFE 221 >gi|229012458|ref|ZP_04169633.1| DNA-binding response regulator [Bacillus mycoides DSM 2048] gi|229167897|ref|ZP_04295628.1| DNA-binding response regulator [Bacillus cereus AH621] gi|228615537|gb|EEK72631.1| DNA-binding response regulator [Bacillus cereus AH621] gi|228748817|gb|EEL98667.1| DNA-binding response regulator [Bacillus mycoides DSM 2048] Length = 225 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 42/221 (19%), Positives = 93/221 (42%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L DD +++ +G + + + + ++ ++ Sbjct: 6 ILLADDDKHIRELLHYHLQKEGFKVFEAEDGKVAQGVLEKENIHLAIVDIM--MPFVDGY 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L IR + +P+I ++ L F SG DD + KP E++ R+ A+ RR ++ Sbjct: 64 TLCEEIRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQM 123 Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + T + G + + G+ LP +E +L L + G+ ++ ++ ++G+ Sbjct: 124 LSADIITLHGTIIDRKGFEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM 183 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D +E V+ H+ +LR + + + + R LGY ++ Sbjct: 184 -DFEGDERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 223 >gi|168334739|ref|ZP_02692871.1| DNA-binding response regulator [Epulopiscium sp. 'N.t. morphotype B'] Length = 228 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 51/225 (22%), Positives = 94/225 (41%), Gaps = 8/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D V D ++ + S E + + DV ++ L G + Sbjct: 3 ILIIEDEKRVADIVAKYLENEKYRVFTCYSGEEGLKVFLDEKIDVVLLDLML--PGMQGE 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA----AIYR 117 E+ + +R S V + IS +L + F+ G D+ + KPI REI+ARV R Sbjct: 61 EICKKMREISNVYIFMISAKGTLDNKVGGFNLGADEYLVKPISPREIVARVNALKTRKER 120 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + G ++++ + R G+ L E IL +L + G+ + Q+ A+ Sbjct: 121 ENNEELCIFDKGNLKIYPETRMVISYGKDIVLTPNEFDILYHLAKSPGRVFXREQLIDAV 180 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 G+ D + ++ HI +RKK+ + + +GY D Sbjct: 181 MGI-DXDGFDRTIDVHIKNIRKKIELDTKSPKFXKTVTGIGYKFD 224 >gi|284046896|ref|YP_003397236.1| two component transcriptional regulator [Conexibacter woesei DSM 14684] gi|283951117|gb|ADB53861.1| two component transcriptional regulator, winged helix family [Conexibacter woesei DSM 14684] Length = 251 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 54/226 (23%), Positives = 96/226 (42%), Gaps = 9/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +++ F +G ++ SS DV ++ L G G Sbjct: 25 ILVVDDESDLREMLTRSFTREGHRVQSVADGRAAIERASSESFDVVLLDVAL-GSGPNGY 83 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-----HHREILARVAAI 115 E+ R +RA VP+I ++ S + ++G DD V KP R A Sbjct: 84 EVCRTLRARRNVVPIIMLTALDSEADAVLGLEAGADDYVTKPFGLAELRSRIRAVLRRAG 143 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 R + S++ E GPI + R+ + GE + E +LE LMA+ G+ + ++ Sbjct: 144 PRPMGASDDLVEVGPIALDRARREVRMNGEPVHVTFSEFELLEALMADPGRLRNRQELLR 203 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 AI+G + ++ H+ LR+KL + + R GY + Sbjct: 204 AIWGDSAY-RDPRAIDVHVRHLREKLEPEPDSPRHIVTVRGAGYRL 248 >gi|269957298|ref|YP_003327087.1| winged helix family two component transcriptional regulator [Xylanimonas cellulosilytica DSM 15894] gi|269305979|gb|ACZ31529.1| two component transcriptional regulator, winged helix family [Xylanimonas cellulosilytica DSM 15894] Length = 226 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 45/219 (20%), Positives = 88/219 (40%), Gaps = 5/219 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + + +G + SA+ D+ ++ L G+ + Sbjct: 6 LVVDDDTALAEMIGMVLRTEGFDPVFCADGDGALAAFRSAQPDIVLLDVML--PGKDGTQ 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IRA S VP+I ++ + +SG DD V KP +E++AR+ A RR + Sbjct: 64 VAREIRAESGVPIIMLTAKSDTVDVVLGLESGADDYVPKPFKPKELVARMRARLRRQEDP 123 Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + G G L E +L L + + + ++G + Sbjct: 124 GPERLLVGDLEIDVTGHTVTRAGGRISLTPLEFDLLVALARKPWQVFTREVLLEKVWG-Y 182 Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219 + + +V H+ +LR K+ + + V + R +GY Sbjct: 183 RHSADTRLVNVHVQRLRSKVERDPENPEIVLTVRGVGYK 221 >gi|228946856|ref|ZP_04109158.1| DNA-binding response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228812843|gb|EEM59162.1| DNA-binding response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 225 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 42/221 (19%), Positives = 93/221 (42%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L DD +++ +G + + + + ++ ++ Sbjct: 6 ILLADDDKHIRELLHYHLQKEGFKVFEAEDGKVAQEVLEKENIHLAIVDIM--MPFVDGY 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L IR + +P+I ++ L F SG DD + KP E++ R+ A+ RR ++ Sbjct: 64 TLCEEIRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQM 123 Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + T + G + + G+ LP +E +L L + G+ ++ ++ ++G+ Sbjct: 124 LSADIITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM 183 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D +E V+ H+ +LR + + + + R LGY ++ Sbjct: 184 -DFEGDERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 223 >gi|251794533|ref|YP_003009264.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247542159|gb|ACS99177.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 246 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 45/239 (18%), Positives = 85/239 (35%), Gaps = 22/239 (9%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD + D +G + + E L R D+ ++ L Sbjct: 5 IIVADDERNITDVCRRYLEREGHEVWVAENGEEAIRLWKEHRPDLLVLDLM--MPKVDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ +IR P+I ++ L G DD + KP RE++ RV I RR Sbjct: 63 EVCDLIRQTDDTPIIMLTARGEEPDRLLGLTMGADDYMTKPFSPRELVLRVHNILRRAGW 122 Query: 122 SN------------------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMAN 163 + + ++ R V L +E +L L Sbjct: 123 RSEASPGERDAEKLSEEASGQAIYLEGLSIYPQERRVSVLESDVELTVKEFDLLHLLAMY 182 Query: 164 RGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 GK +++Q+ + ++ + + V H+ +LR+K+ N + + +GY +D Sbjct: 183 PGKVFSRSQLLNQVWDIA-FDGDTTTVTVHVRRLREKIEPNPSDPTWIKTVWGIGYKLD 240 >gi|94985622|ref|YP_604986.1| two component transcriptional regulator [Deinococcus geothermalis DSM 11300] gi|94555903|gb|ABF45817.1| two component transcriptional regulator, winged helix family [Deinococcus geothermalis DSM 11300] Length = 227 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 50/225 (22%), Positives = 97/225 (43%), Gaps = 8/225 (3%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + ++++D + + A +G E +A+ D+ ++ L G Sbjct: 4 LILIVEDEPQLAEVLEAYARQEGYRTERAGDGLAALTAYRAAQPDLILLDVML--PGRSG 61 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIY 116 L++ + +RA P+I ++ + + G DD V KP RE++ARV + Sbjct: 62 LDVLKTVRADGPTPVILVTARAEETDQIVGLELGADDYVVKPFRPREVMARVKAVLRRAH 121 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 L+ + GP+ V V G+ L E R+L YL G+ + ++ +A Sbjct: 122 AALEGTERPLRVGPLEVDRRAARARVNGQPLGLTPAEFRLLAYLAQVPGRACTREELLAA 181 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 L D E VV++H++ +R+KL + + + R +GY ++ Sbjct: 182 A--LPDSDALERVVDAHLASVRRKLDAAQAGELLHTVRGVGYRLE 224 >gi|108805570|ref|YP_645507.1| two component transcriptional regulator [Rubrobacter xylanophilus DSM 9941] gi|108766813|gb|ABG05695.1| two component transcriptional regulator, winged helix family [Rubrobacter xylanophilus DSM 9941] Length = 241 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 43/223 (19%), Positives = 93/223 (41%), Gaps = 6/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++ G + + + R D+ ++ L GE + Sbjct: 8 ILIVEDDEVIMGTLAYNLARQGFEVSRATTAAEGLRMARKLRPDLILLDIML--PGESGI 65 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI--YRR 118 + + IR + +I I+ + + + F++G DD V KP +E++AR+ A Sbjct: 66 RVCQRIREEDEDVVIIMITAKDAEEDKVRGFEAGADDYVTKPFGMKELVARIHAHLKRSD 125 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 E G + + + +V GE L +E +L L ++ G+ ++ ++ ++ Sbjct: 126 AGHRGRVLEAGDLSLDTKNFVAKVGGEPLSLRLKEFELLAALASDPGELKSREELAKEVW 185 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 G ++ HI ++R L K +D + + R LGY + Sbjct: 186 G-HAGVGSSRTIDVHIRRIRAALEKKSAYDYIHTARGLGYRFE 227 >gi|300858078|ref|YP_003783061.1| two-component system transcriptional regulatory protein [Corynebacterium pseudotuberculosis FRC41] gi|300685532|gb|ADK28454.1| two-component system transcriptional regulatory protein [Corynebacterium pseudotuberculosis FRC41] gi|302205800|gb|ADL10142.1| Putative two component system response regulator [Corynebacterium pseudotuberculosis C231] gi|302330359|gb|ADL20553.1| Putative two component system response regulator [Corynebacterium pseudotuberculosis 1002] gi|308276035|gb|ADO25934.1| two component system response regulator [Corynebacterium pseudotuberculosis I19] Length = 230 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 49/226 (21%), Positives = 96/226 (42%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 V++DD V++ +G + + + ++ ++ L Sbjct: 3 IVVVDDEQAVRESLRRSLSFNGYDVFLAEDGVQALEVIEKEQPELVILDVM--MPRMDGL 60 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +R A P++ ++ + + D+G DD + KP E+LARV ++ RR Sbjct: 61 EVCRTLRSAGDDRPILVLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLLRRAA 120 Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 S +++ D RD G L R E +L+ LMAN + ++++ I Sbjct: 121 ADAVGGPSQGELTFDDLKLNPDTRDVTRGGRHISLTRTEFALLQLLMANARRVLSRSTIL 180 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G +D N +E +I LR+K ++ + + R +GY + Sbjct: 181 EEVWG-YDFPTSGNALEVYIGYLRRKTESEGEPRLIHTVRGVGYVL 225 >gi|294812933|ref|ZP_06771576.1| Two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294325532|gb|EFG07175.1| Two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 260 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 44/219 (20%), Positives = 92/219 (42%), Gaps = 5/219 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + + +G + A+ D+ ++ L G +E Sbjct: 41 LVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLML--PGRDGIE 98 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLKV 121 + R+IRA S VP++ ++ + +SG DD + KP +E++AR+ A R + Sbjct: 99 VCRLIRAESGVPIVMLTAKSDTVDVVVGLESGADDYIIKPFKPKELVARIRARLRRSEEP 158 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + G + + G + G+ L E +L L + + + ++G + Sbjct: 159 APEQLTIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWG-Y 217 Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219 A + +V H+ +LR K+ + V + R +GY Sbjct: 218 RHAADTRLVNVHVQRLRSKVEKDPERPEIVVTVRGVGYK 256 >gi|226322402|ref|ZP_03797920.1| hypothetical protein COPCOM_00170 [Coprococcus comes ATCC 27758] gi|225209202|gb|EEG91556.1| hypothetical protein COPCOM_00170 [Coprococcus comes ATCC 27758] Length = 229 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 48/230 (20%), Positives = 89/230 (38%), Gaps = 12/230 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D ++ + F + + D++ ++ L Sbjct: 3 ILVVDDEKEIADVVELYLQNE-YHVLKFYTGQEALECIEKTNVDLAILDVML--PDIDGF 59 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R IR P+I ++ + + G DD + KP + E++ARV A RR Sbjct: 60 TILRKIREKYTFPVIMLTAKTEYRDKITGLTMGADDYIPKPFNPLELVARVKAQMRRYTQ 119 Query: 122 SNNRAETGPIRV--------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 N+ ++ + + + + PL E IL L NRGK ++ ++ Sbjct: 120 YNDGKKSDSENIIDFAGLLLNKESHECIYNEQSLPLTPTEFEILWILCENRGKVISSQRL 179 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSIDW 222 F ++ N V HI LR+KL G D + + +GY I+ Sbjct: 180 FEEVWHEEYLKNSNNTVMVHIRHLREKLSKPTGKSDLIKTVWGVGYKIEE 229 >gi|145295044|ref|YP_001137865.1| hypothetical protein cgR_0988 [Corynebacterium glutamicum R] gi|140844964|dbj|BAF53963.1| hypothetical protein [Corynebacterium glutamicum R] Length = 255 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 40/228 (17%), Positives = 86/228 (37%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V+D +G ++ + + + ++ L Sbjct: 26 ILVVDDEQAVRDSLRRSLSFNGYNVVLAEDGIQALEMIDKEQPALVILDVM--MPRMDGL 83 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI--------HHREILARV 112 E+ R +R P++ ++ ++ + D+G DD + KP + Sbjct: 84 EVCRHLRSEGDDRPILILTARDNVSDRVGGLDAGADDYLAKPFALEELLARVRSLVRRSA 143 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + G + + + RD G L R E +L+ L+ N+ K + + Q Sbjct: 144 VESNQSSNIEQALLSCGDLTLDPESRDVYRNGRAISLTRTEFALLQLLLKNQRKVLTRAQ 203 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I ++G +D N +E +I LR+K + + + R +GY + Sbjct: 204 ILEEVWG-YDFPTSGNALEVYIGYLRRKTELEGEDRLIHTVRGVGYVL 250 >gi|229011744|ref|ZP_04168926.1| Two-component response regulator [Bacillus mycoides DSM 2048] gi|229170686|ref|ZP_04298329.1| Two-component response regulator [Bacillus cereus AH621] gi|228612789|gb|EEK69971.1| Two-component response regulator [Bacillus cereus AH621] gi|228749541|gb|EEL99384.1| Two-component response regulator [Bacillus mycoides DSM 2048] Length = 228 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 50/227 (22%), Positives = 93/227 (40%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ ++G+ + L R D+ ++ + Sbjct: 5 ILIVDDDKEIRNLISVYLENEGLKTQKAEDAIEALELLEEKRFDLIILDVM--MPNMDGI 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E IR +P+I +S + SG DD ++KP + E++ARV + RR K Sbjct: 63 EACMKIREERNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 122 Query: 122 SNNRAETGPI-------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N + V +D R ++G L +E ILE L N+G ++ +I+ Sbjct: 123 YNTNTDNDKSVLEIGDLTVNTDTRQVWIRGTEVRLTPKEFDILELLARNKGIVLSVAKIY 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220 A++ +N V HI+K+R K+ + + +GY I Sbjct: 183 EAVW-KDAFYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGYKI 228 >gi|161502712|ref|YP_001569824.1| DNA-binding transcriptional regulator BaeR [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160864059|gb|ABX20682.1| hypothetical protein SARI_00761 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 240 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 49/224 (21%), Positives = 89/224 (39%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + I + N + D+ ++ L G L Sbjct: 13 ILIVEDEPKLGQLIIDYLRAASYTPTLINHGDKVLPYVRQTPPDLILLDLML--PGTDGL 70 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R IR S +P++ ++ L + G DD + KP RE++ARV I RR K Sbjct: 71 TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 Query: 122 SNNRAE---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + P+ + G+ L E R+L+ L GK ++ Q+ + +Y Sbjct: 131 QRELQQLDAESPLMIDESRFQASWCGKALDLTPAEFRLLKTLSLEPGKVFSREQLLNHLY 190 Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + V + ++SHI LR+KL + + + +GY + Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 >gi|126701214|ref|YP_001090111.1| two-component response regulator [Clostridium difficile 630] gi|254977214|ref|ZP_05273686.1| two-component response regulator [Clostridium difficile QCD-66c26] gi|255094542|ref|ZP_05324020.1| two-component response regulator [Clostridium difficile CIP 107932] gi|255102800|ref|ZP_05331777.1| two-component response regulator [Clostridium difficile QCD-63q42] gi|255308621|ref|ZP_05352792.1| two-component response regulator [Clostridium difficile ATCC 43255] gi|255316295|ref|ZP_05357878.1| two-component response regulator [Clostridium difficile QCD-76w55] gi|255518956|ref|ZP_05386632.1| two-component response regulator [Clostridium difficile QCD-97b34] gi|255652135|ref|ZP_05399037.1| two-component response regulator [Clostridium difficile QCD-37x79] gi|260685108|ref|YP_003216393.1| two-component response regulator [Clostridium difficile CD196] gi|260688766|ref|YP_003219900.1| two-component response regulator [Clostridium difficile R20291] gi|306521867|ref|ZP_07408214.1| two-component response regulator [Clostridium difficile QCD-32g58] gi|115252651|emb|CAJ70494.1| Two-component response regulator, CheY family [Clostridium difficile] gi|260211271|emb|CBA66824.1| two-component response regulator [Clostridium difficile CD196] gi|260214783|emb|CBE07502.1| two-component response regulator [Clostridium difficile R20291] Length = 228 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 39/220 (17%), Positives = 88/220 (40%), Gaps = 3/220 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 L++D + I L +G + ++ + + D++ I+ L Sbjct: 4 IFLVEDDKAIAKNLILLLNSEGFIVTHVSTRSEALVEIAKNKFDLALIDISL--PDGNGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + I+ +P+I ++ + + + G DD + KP RE++AR+ R+ Sbjct: 62 TICTEIKEKQDIPVIFLTASGDESSVVTGLNMGADDYITKPFRPRELIARIRTALRKSGR 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + E + V + + G L E R+L ++N + + ++ ++ Sbjct: 122 FGSTFEICGLYVDTATGVVKKNGNEVFLSALEYRLLLVFISNPKSIITRVRLLDELWDAA 181 Query: 182 DEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 E V +N + +I +LR+K+ + + + R GY + Sbjct: 182 GEFVNDNTLTVYIKRLREKIEDDPSSPQIILTVRGTGYRL 221 >gi|315647320|ref|ZP_07900433.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] gi|315277522|gb|EFU40851.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] Length = 235 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 38/227 (16%), Positives = 83/227 (36%), Gaps = 10/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + G S + + + D ++ L + Sbjct: 7 ILIIEDEQDISRIVNDYLRVQGFSAFIAENASDGLREVRNRQPDFIILDLTL--PDADGI 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH------HREILARVAAI 115 E+ R +R + P++ +S S + G DD + KP + R A Sbjct: 65 EVCRKLRTLTAAPILILSARSSDTDKVLALGFGADDYMTKPFSLSELVARVQAHLRRLAD 124 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + + + R L +E +L +L ++ + K+Q+ Sbjct: 125 PKFKATTQQLLRFDSLSIDKTARKVMAGHLEISLSAKEFDLLYFLASHPNQVFTKSQLLD 184 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 ++G + VE+N + +I +LR+KL +++ + + +GY D Sbjct: 185 QVWG-YSAFVEDNTITVYIRRLREKLERSEIKHSYITTVWGVGYKFD 230 >gi|226349472|ref|YP_002776586.1| putative OmpR family two-component response regulator [Rhodococcus opacus B4] gi|226245387|dbj|BAH55734.1| putative OmpR family two-component response regulator [Rhodococcus opacus B4] Length = 253 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 48/232 (20%), Positives = 93/232 (40%), Gaps = 17/232 (7%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + + + + L DV ++ L G +E Sbjct: 21 LVVDDERPLAAVVASYLEREHFEVAVAYNGVDALTLAREIDPDVVVLDLGL--PGMDGIE 78 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +R S ++ ++ + T+ G DD V KP RE++AR+ A+ RR + + Sbjct: 79 VCRELRTFSDAYVVMLTARSAEMDTIIGLSVGADDYVTKPFSPRELVARIRAMLRRPRKA 138 Query: 123 NNRAETGPIR-------------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 P + GR+ + + L R E +L L + G + Sbjct: 139 PVYEIPAPEPGAEAPPRVFGALRIDVAGREVCLGEQPVMLTRTEFDVLAVLSSRPGMAFS 198 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 + Q+ A++G E++V+ H+ LR+KL + V + R +GY + Sbjct: 199 RRQLIEAVWGES-WVGNEHLVDVHVGHLRRKLGDDPAAPRYVTTVRGIGYRM 249 >gi|330718091|ref|ZP_08312691.1| DNA-binding response regulator [Leuconostoc fallax KCTC 3537] Length = 229 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 42/229 (18%), Positives = 91/229 (39%), Gaps = 9/229 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + ++G + + ++ D S + ++ L Sbjct: 3 ILVVDDDNEIAELLEIYLKNEGYEPVMASDGKEALSKLNTN-PDTSLMILDVMMPNMNGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + +R S++P++ +S + +G DD V KP + E++ARV ++ RR + Sbjct: 62 DVVKTVRKDSRIPILMLSAKSGDMDKIQGLITGADDYVTKPFNPLEVMARVRSLLRRAEN 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF------PLPRRERRILEYLMANRGKRVAKTQIFS 175 + + + S + + L E IL L ++ + + IF Sbjct: 122 AVQDKAPDVLDIGSLIINKDSHEVKTVAGDLVNLTALEFGILYLLASHPNRVFSADDIFE 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDWN 223 ++ + V V H+S LR K+ G + + +GY I+ N Sbjct: 182 KVW-QQESVVSAKTVMVHVSHLRDKIEEATSGDQVIQTVWGVGYKIEVN 229 >gi|260588461|ref|ZP_05854374.1| DNA-binding response regulator ResD [Blautia hansenii DSM 20583] gi|331082261|ref|ZP_08331388.1| hypothetical protein HMPREF0992_00312 [Lachnospiraceae bacterium 6_1_63FAA] gi|260541335|gb|EEX21904.1| DNA-binding response regulator ResD [Blautia hansenii DSM 20583] gi|330403055|gb|EGG82620.1| hypothetical protein HMPREF0992_00312 [Lachnospiraceae bacterium 6_1_63FAA] Length = 225 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 37/222 (16%), Positives = 88/222 (39%), Gaps = 6/222 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + ++ G + E + + D+ I ++ Sbjct: 7 LVVDDESRMRKLVSDFLTKQGYEVLEAGDGEAALDIFYKDK-DIQLIILDVMMPKLDGWG 65 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV--NKPIHHREILARVAAIYRRLK 120 + R IR S++P+I ++ + L F+ GVD+ + Sbjct: 66 VCREIRKDSKIPIIMLTARGDERDELLGFELGVDEYISKPFSPKILVARVEAILRRTSAI 125 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 S++ G I + + G+ L +E +L Y + N+G +++ +I ++++ Sbjct: 126 GSDDILSAGGIEINKTSHTASIDGKTMDLSYKEFELLTYFLENQGIALSREKILNSVW-N 184 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D + +++H+ KLR K+ K + + + +GY + Sbjct: 185 YDYFGDARTIDTHVKKLRSKIGAKG--EYIKTIWGMGYKFEV 224 >gi|254976863|ref|ZP_05273335.1| DNA-binding response regulator [Clostridium difficile QCD-66c26] gi|255094250|ref|ZP_05323728.1| DNA-binding response regulator [Clostridium difficile CIP 107932] gi|255316003|ref|ZP_05357586.1| DNA-binding response regulator [Clostridium difficile QCD-76w55] gi|255518660|ref|ZP_05386336.1| DNA-binding response regulator [Clostridium difficile QCD-97b34] gi|255651782|ref|ZP_05398684.1| DNA-binding response regulator [Clostridium difficile QCD-37x79] gi|260684808|ref|YP_003216093.1| hypothetical protein CD196_3079 [Clostridium difficile CD196] gi|260688466|ref|YP_003219600.1| hypothetical protein CDR20291_3125 [Clostridium difficile R20291] gi|306521572|ref|ZP_07407919.1| hypothetical protein CdifQ_18911 [Clostridium difficile QCD-32g58] gi|260210971|emb|CBA66245.1| putative uncharacterized protein [Clostridium difficile CD196] gi|260214483|emb|CBE06963.1| putative uncharacterized protein [Clostridium difficile R20291] Length = 232 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 49/230 (21%), Positives = 86/230 (37%), Gaps = 13/230 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D ++ + F S + D++ ++ L G Sbjct: 5 ILVVDDERDIADLIEVYLTNENYIVYKFYSGLDALNCINLNEFDLAILDVML--PGVNGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L + IR P+I ++ + G DD V KP E++ARV A RR K Sbjct: 63 SLCQKIREKYTYPIIMLTAKDEETDKITGLTLGADDYVTKPFRPLELVARVKAQIRRYKK 122 Query: 122 S----------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 ++ + + + + + G+ L E IL L+ N+G V Sbjct: 123 YSGSLQSGEELSHIFSFLGLELNTQTYECHLNGKALSLTPTEFSILHVLLKNKGSVVNSE 182 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220 +F AI+ N + HI LR+KL + + + +GY I Sbjct: 183 NLFHAIWKDEYYNKSNNTITVHIRHLREKLGDTVDEAKYIKTIWGVGYKI 232 >gi|294786787|ref|ZP_06752041.1| DNA-binding response regulator MtrA [Parascardovia denticolens F0305] gi|315226412|ref|ZP_07868200.1| DNA-binding response regulator [Parascardovia denticolens DSM 10105] gi|294485620|gb|EFG33254.1| DNA-binding response regulator MtrA [Parascardovia denticolens F0305] gi|315120544|gb|EFT83676.1| DNA-binding response regulator [Parascardovia denticolens DSM 10105] Length = 239 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 40/229 (17%), Positives = 85/229 (37%), Gaps = 16/229 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G S L ++ R D+ ++ L L Sbjct: 14 ILVVEDEPTLATAIGQRLASEGWSTRIAGDGASAVQLAATYRPDLIIMDIML--PVMDGL 71 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-------- 113 E + I VP++ ++ + +G DD + KP RE++AR Sbjct: 72 EATKRIVTMRPVPILMLTARDDETDKVIGLGAGADDYMTKPFSMRELVARCKALLRRVER 131 Query: 114 -AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + + E + + R ++GE L E +L L + + + + Sbjct: 132 AKVIAKNSENEKVLEFHGLTIDPAQRLVVLRGEEIHLTPTEFDLLATLARKPKQVLTREK 191 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + ++ D + V+SH+ LR KL G + + + +GY+ + Sbjct: 192 LLEEVWDWVDASG-TRTVDSHVKALRHKL----GSEMIRTVHGVGYAFE 235 >gi|293607199|ref|ZP_06689540.1| transcriptional regulator FeuP [Achromobacter piechaudii ATCC 43553] gi|292814291|gb|EFF73431.1| transcriptional regulator FeuP [Achromobacter piechaudii ATCC 43553] Length = 219 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 48/221 (21%), Positives = 98/221 (44%), Gaps = 9/221 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + G +++ E +L D ++ L L Sbjct: 3 ILVVEDEPTLAAQLADALRGAGYTVDVAGDGESARFLGDVETFDAVVLDLGL--PVMDGL 60 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119 + ++ R A +P++ ++ + + D+G DD + KP H E+LARV A + R Sbjct: 61 TVLKLWRAAQRNMPVLILTARDNWHEKVAGIDAGADDYLTKPFHMEELLARVRALLRRST 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++ + GP+ + + + G+ L E ++L LM G+ V++T++ +Y Sbjct: 121 AHASAQWRCGPLMLDTRQARVTIDGQALSLTSHEFKVLSVLMQRAGEVVSRTELIDHVY- 179 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D + N ++ I++LRKKL +++ R LGY + Sbjct: 180 AQDFDRDSNTIDVFIARLRKKL----PPGTIETVRGLGYRL 216 >gi|255523653|ref|ZP_05390620.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|255512708|gb|EET88981.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] Length = 225 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 51/227 (22%), Positives = 92/227 (40%), Gaps = 10/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + L + + S L D+ ++ L G Sbjct: 4 ILVVEDDPKINKMVQTLLRKNEYEVVAAFSGTEALLLLEKESFDLILLDLML--PGLSGE 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116 E+ I Q+P+I +S L T L+ G DD + KP ++ E++ R Sbjct: 62 EILAKINEEFQIPIICVSAKDDLGTKLELIRDGADDYITKPFNNEELIVRIGAVLRRMNK 121 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 R +N + + S+ + E L +E ILE L+++ K K IF + Sbjct: 122 GRTIDKSNIFGFKDLILDSENHIVTINDEPIELTVKEYSILELLISSPRKVFTKQNIFES 181 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 ++ + ++E VV H+S LR KL K G + + + +GY + N Sbjct: 182 VWSE-EYIMDERVVTVHVSNLRNKL--KHGEEYIKTVWGIGYKMQDN 225 >gi|108763454|ref|YP_632339.1| DNA-binding response regulator [Myxococcus xanthus DK 1622] gi|108467334|gb|ABF92519.1| DNA-binding response regulator [Myxococcus xanthus DK 1622] Length = 232 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 40/227 (17%), Positives = 88/227 (38%), Gaps = 14/227 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD +++ G ++ + ++ L Sbjct: 8 LVVDDDPHLREIVRFALEQGGFRVDEAADGRAALTQVDRGLPALIVLDIM--MPELDGLA 65 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA--------- 113 + R +R ++P++ +S + + G DD + KP RE++ARV Sbjct: 66 VCREVRRKHELPIVFLSSRDDEVDRILGLELGGDDYLTKPFSPRELVARVKAVLRRARPA 125 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + GP+R+ ++ Q L E ++L L+ GK + ++ Sbjct: 126 PAPEVEAPAARMQSRGPLRMDAERWRAWWQDTEVVLTVTEFQLLATLLRVPGKVFTRDEL 185 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + +Y D V + ++SH+ ++R+K + G D +++ LGY + Sbjct: 186 MNRVYD--DVVVSDRTIDSHVRRVRQKFASAGG-DVIETVHGLGYRL 229 >gi|68535406|ref|YP_250111.1| two-component system response regulator TcsR1 [Corynebacterium jeikeium K411] gi|68263005|emb|CAI36493.1| two-component system response regulator TcsR1 [Corynebacterium jeikeium K411] Length = 233 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 47/223 (21%), Positives = 95/223 (42%), Gaps = 9/223 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD A + D G +E ++ + L ++ + D ++ G Sbjct: 10 LVVDDEANISDLLKVSLKFQGFDVETADNGQDALALAATYKPDAFILDVM--MPGMDGFT 67 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L +RA P + ++ ++ + G DD V KP E++ R+ I RR+ Sbjct: 68 LLNKLRAAGHDAPALFLTAKDGVEDRIHGLTIGADDYVTKPFSLEEVITRLRVILRRVSS 127 Query: 122 SNNRAETGPIRVFSDGRDPEVQGE----VFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + + D + + L E ++L YL+ N ++K +I + Sbjct: 128 EDEQESSLITYEDITLDDDMHEVTKAGEIVELSPTEFKLLRYLLVNAEVVLSKAKILDHV 187 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + +D + NVVES++S LR+K+ +K + + R +GY + Sbjct: 188 W-NYDFGGDGNVVESYVSYLRRKI-DKEEPHLIQTVRGVGYVL 228 >gi|229090890|ref|ZP_04222118.1| Two-component response regulator vanR [Bacillus cereus Rock3-42] gi|228692499|gb|EEL46230.1| Two-component response regulator vanR [Bacillus cereus Rock3-42] Length = 242 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 40/229 (17%), Positives = 83/229 (36%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +G + ++ E + + ++ ++ + Sbjct: 16 ILIVDDDQDIVRFMNVNLMQEGFKVFSAHNGEEALEIINYNSIQLAILDIM--MPQMDGI 73 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARVA 113 EL R IR +P+I +S S + F +G DD + KP E Sbjct: 74 ELCRRIREKHSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 133 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 ++V + + + R + GE L + E IL + A + + +I Sbjct: 134 FNQHAVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYDILFLMAAAKNRVFTIEEI 193 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + +++ N V HI++LR K+ + + +GY I+ Sbjct: 194 YESVWKERAYE-SNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIE 241 >gi|27461219|gb|AAM09851.1| response regulator [Enterococcus faecium] gi|109240379|dbj|BAE96113.1| response regulator [Enterococcus raffinosus] Length = 232 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 46/232 (19%), Positives = 89/232 (38%), Gaps = 15/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +DG ++ F + S D++ ++ L Sbjct: 5 ILVVDDEKELADLVEVYLKNDGYTVYKFYNGRDALNCIESVELDLAILDIML--PDIDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + IR P+I ++ S DD + KP + E++ARV A R+ Sbjct: 63 QICQKIREKFYFPVIMLTA-KVEDGDKIMGLSVADDYITKPFNPLEVVARVKAQLRQYMR 121 Query: 122 SNNRAETGP----------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + + + G+ L E IL YL +G V+ Sbjct: 122 YKQPCIKQEAERTEYDIRGMTISKSSHKCILFGKEIQLTPTEFSILWYLCERQGTVVSTE 181 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 ++F A++G N V +HI +LR+K++ + + +GY+I+ Sbjct: 182 ELFEAVWGERYFD-SNNTVMAHIGRLREKMKEPSRNPKFIKTVWGVGYTIEK 232 >gi|52142292|ref|YP_084536.1| response regulator [Bacillus cereus E33L] gi|51975761|gb|AAU17311.1| response regulator [Bacillus cereus E33L] Length = 225 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 42/221 (19%), Positives = 93/221 (42%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L DD +++ +G + + + + ++ ++ Sbjct: 6 ILLADDDKHIRELLHYHLQKEGFKVFEAEDGKVAQEVLEKENIHLAIVDIM--MPFVDGY 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L IR + +P+I ++ L F SG DD + KP E++ R+ A+ RR ++ Sbjct: 64 TLCEEIRKYHDIPVILLTAKDQLVDKERGFISGTDDYIVKPFEPAEVIFRMKALLRRYQM 123 Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + T + G + + G+ LP +E +L L + G+ ++ ++ ++G+ Sbjct: 124 LSADIITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM 183 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D +E V+ H+ +LR + + + + R LGY ++ Sbjct: 184 -DFEGDERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 223 >gi|15840172|ref|NP_335209.1| DNA-binding response regulator [Mycobacterium tuberculosis CDC1551] gi|215444890|ref|ZP_03431642.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis T85] gi|218752415|ref|ZP_03531211.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis GM 1503] gi|260185650|ref|ZP_05763124.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis CPHL_A] gi|306966786|ref|ZP_07479447.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu009] gi|308379861|ref|ZP_07487881.2| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu011] gi|13880325|gb|AAK45023.1| DNA-binding response regulator [Mycobacterium tuberculosis CDC1551] gi|308355483|gb|EFP44334.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu009] gi|308363343|gb|EFP52194.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu011] Length = 240 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 86/224 (38%), Gaps = 10/224 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD A + + G + + R D ++ G Sbjct: 17 LVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVM--MPGMDGFG 74 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPI-----HHREILARVAAIY 116 + R +RA P + ++ SLQ + G DD V KP R + A Sbjct: 75 VLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAGK 134 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + N R I + + + G+ L E +L Y + N G ++K +I Sbjct: 135 GNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDH 194 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +D + NVVES++S LR+K+ + + + R +GY + Sbjct: 195 VW-RYDFGGDVNVVESYVSYLRRKI-DTGEKRLLHTLRGVGYVL 236 >gi|49477414|ref|YP_036047.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49328970|gb|AAT59616.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 232 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 40/229 (17%), Positives = 83/229 (36%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +G + + E + ++ ++ ++ + Sbjct: 6 ILIVDDDQDIVRFMNVNLMQEGFKVFSAYNGEEALEIINNNSIQIAILDIM--MPQMDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARVA 113 EL R IR +P+I +S S + F +G DD + KP E Sbjct: 64 ELCRRIREKHSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 123 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 ++V + + + R + GE L + E IL + A + + +I Sbjct: 124 FNQNAVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYEILYLMAAAKNRVFTIEEI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + +++ N V HI++LR K+ + + +GY I+ Sbjct: 184 YESVWKERAYE-SNNTVMVHITRLRNKIEENPKEPKFIQNVWGVGYKIE 231 >gi|26991996|ref|NP_747421.1| winged helix family two component transcriptional regulator [Pseudomonas putida KT2440] gi|24987128|gb|AAN70885.1|AE016732_10 DNA-binding response regulator PhoB [Pseudomonas putida KT2440] Length = 242 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 46/224 (20%), Positives = 92/224 (41%), Gaps = 9/224 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A +++ G + + + + D+ ++ L G + Sbjct: 19 ILIVDDEAPIREMIAVALEMAGYDCLEAENSQQAHAIIVDRKPDLILLDWML--PGTSGI 76 Query: 62 ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IY 116 EL R ++ +P+I ++ + + G DD + KP RE++AR+ A Sbjct: 77 ELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 136 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 S E G + + + G+ + E R+L++ M ++ + + Q+ Sbjct: 137 TGPSDSEAPIEVGGLLLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAYTRGQLLDQ 196 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + VEE V+ HI +LRK L + V + R GY Sbjct: 197 VWG-GNVYVEERTVDVHIRRLRKALGEAYE-NLVQTVRGTGYRF 238 >gi|16124549|ref|NP_419113.1| phosphate regulon response regulator PhoB [Caulobacter crescentus CB15] gi|221233235|ref|YP_002515671.1| phosphate regulon response regulator PhoB [Caulobacter crescentus NA1000] gi|13421435|gb|AAK22281.1| phosphate regulon response regulator PhoB [Caulobacter crescentus CB15] gi|220962407|gb|ACL93763.1| phosphate regulon response regulator PhoB [Caulobacter crescentus NA1000] Length = 230 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 57/222 (25%), Positives = 99/222 (44%), Gaps = 4/222 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVL 61 ++++D + +G + E + + D+ ++ L G +V Sbjct: 6 LVVEDEDALATLLHYNLDKEGYRVGVAGDGEEALIMANERAPDLVILDWMLPKVSGIEVC 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 R VP+I ++ + D+G DD V KP E+ ARV A+ RR++ Sbjct: 66 RRLRGRAETRNVPIIMLTARGEETDRIRGLDTGADDYVVKPFSMVELTARVRAVLRRIRP 125 Query: 122 --SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +++R G I + + G+ L E R+L+YLM + G+ ++ Q+ A++G Sbjct: 126 GLADDRITVGDIIIDRVAHRVKRSGKEIHLGPTEFRLLDYLMQHPGRVFSREQLLDAVWG 185 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D VE V+ HI +LRK L DP+ + R GYS+D Sbjct: 186 -SDVYVEARTVDVHIGRLRKALNGTTDADPIRTVRSAGYSLD 226 >gi|84498095|ref|ZP_00996892.1| putative two-component system response regulator [Janibacter sp. HTCC2649] gi|84381595|gb|EAP97478.1| putative two-component system response regulator [Janibacter sp. HTCC2649] Length = 225 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 51/221 (23%), Positives = 89/221 (40%), Gaps = 6/221 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L +D + + +G +E D+ ++ L LE Sbjct: 5 LLAEDDPAISEPLARALRREGYEVEVRADGREALEAAREN-PDLVVLDLGL--PTMDGLE 61 Query: 63 LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R +R VP++ ++ T+ D+G DD V KP E+LAR A+ RR Sbjct: 62 VCRRLRGEGHTVPVLVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARARALLRRGIP 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 IRV ++ R + E L +E +L L N+GK +++ Q+ ++ Sbjct: 122 EAVPTGQVDIRVDAESRRVFLHDEEIQLTAKEYELLRVLARNQGKVISREQLMREVW-ET 180 Query: 182 DEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 ++ HIS LRKKL + + + R +G+ D Sbjct: 181 AWYGSTKTLDMHISVLRKKLGDDAMQPRYITTIRGVGFRFD 221 >gi|229162132|ref|ZP_04290103.1| DNA-binding response regulator [Bacillus cereus R309803] gi|228621339|gb|EEK78194.1| DNA-binding response regulator [Bacillus cereus R309803] Length = 223 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 41/221 (18%), Positives = 93/221 (42%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L DD +++ +G + + + + ++ ++ Sbjct: 4 ILLADDDKHIRELLHYHLQKEGFKVFEAEDGKVAQGVLEKENIHLAIVDIM--MPFVDGY 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L IR + +P+I ++ L F +G DD + KP E++ R+ A+ RR ++ Sbjct: 62 TLCEEIRKYHDIPVILLTAKDQLVDKEKGFIAGTDDYIVKPFEPAEVIFRMKALLRRYQM 121 Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + T + G + + G+ LP +E +L L + G+ ++ ++ ++G+ Sbjct: 122 LSADIITLHGTTIDRKGIEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D +E V+ H+ +LR + + + + R LGY ++ Sbjct: 182 -DFEGDERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 221 >gi|261418005|ref|YP_003251687.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC61] gi|297529673|ref|YP_003670948.1| two component transcriptional regulator, winged helix family [Geobacillus sp. C56-T3] gi|319767181|ref|YP_004132682.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC52] gi|261374462|gb|ACX77205.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC61] gi|297252925|gb|ADI26371.1| two component transcriptional regulator, winged helix family [Geobacillus sp. C56-T3] gi|317112047|gb|ADU94539.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC52] Length = 224 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 49/221 (22%), Positives = 86/221 (38%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D A + +G + L S + D+ ++ L + Sbjct: 5 ILLIEDEAGLARFLELDLKHEGFDVHVCADGREGLELALSEQWDLILLDVML--PSLNGM 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119 E+ R IRA P++ I+ S+ + D+G DD + KP E+ R Sbjct: 63 EVCRRIRAAKSTPIMMITARDSVFDRVMGLDNGADDYIVKPFAIEELLARIRALFRRVHP 122 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + + V R + E L +RE +L M N + + + ++G Sbjct: 123 EANAQVLTFKDLVVDVQARTVKKGDEFIELTKREYDLLVAFMQNINVVLTRDALLDKVWG 182 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 FD VE NVV+ ++ LR+KL + + R GY + Sbjct: 183 -FDAEVETNVVDVYVRYLRQKLDEHDKERYIQTVRGTGYVM 222 >gi|15842835|ref|NP_337872.1| DNA-binding response regulator MtrA [Mycobacterium tuberculosis CDC1551] gi|13883164|gb|AAK47686.1| DNA-binding response regulator MtrA [Mycobacterium tuberculosis CDC1551] Length = 235 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 43/220 (19%), Positives = 85/220 (38%), Gaps = 5/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A + + + +G R D+ ++ L G + Sbjct: 15 ILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDLML--PGMNGI 72 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R++RA S VP++ ++ + +SG DD + KP +E++ARV A RR Sbjct: 73 DVCRVLRADSGVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRRNDD 132 Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + GE L E +L L + + + ++G Sbjct: 133 EPAEMLSIADVEIDVPAHKVTRNGEQISLTPLEFDLLVALARKPRQVFTRDVLLEQVWG- 191 Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219 + + +V H+ +LR K+ + V + R +GY Sbjct: 192 YRHPADTRLVNVHVQRLRAKVEKDPENPTVVLTVRGVGYK 231 >gi|320101577|ref|YP_004177168.1| winged helix family two component transcriptional regulator [Isosphaera pallida ATCC 43644] gi|319748859|gb|ADV60619.1| two component transcriptional regulator, winged helix family [Isosphaera pallida ATCC 43644] Length = 236 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 47/226 (20%), Positives = 82/226 (36%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++IDD + + +G + + D+ ++ L G +V Sbjct: 6 ILVIDDERSLVEVLAINLEREGFEVMTAFDGQDGLRQAQVKLPDLIVLDLMLPVKPGLEV 65 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 R VP+I ++ L F G DD V+KP + ++ R+ R + Sbjct: 66 CRELRADSRTRDVPVIMLTAKTEETDELVGFAMGADDYVSKPYRMKVLIQRIKTQLNRRR 125 Query: 121 VSNNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + + + E L E R+LE LM G+ + ++ Sbjct: 126 QTEDAKNGDLVVERHGVVIDRHRHRALCNNEELLLTPTEFRLLEALMRQAGRAFTRHELM 185 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 A G D V E ++ HI LRKKL D +++ R +GY Sbjct: 186 DAAMGE-DAVVLERTIDVHIKSLRKKL--NHSADLIETVRGVGYRF 228 >gi|313813774|gb|EFS51488.1| response regulator receiver domain protein [Propionibacterium acnes HL025PA1] Length = 232 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 45/230 (19%), Positives = 91/230 (39%), Gaps = 11/230 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V++ G ++ S D ++ L Sbjct: 5 ILVVDDDRAVRESLARSLQYSGYEVDSAADGVEALAHLSGTHPDAVIMDVM--MPRLDGL 62 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E R++R++ P++ ++ ++ +D D+G DD + KP E+LAR+ A+ RR + Sbjct: 63 EATRMLRSNGNDVPILILTARDAVDDRVDGLDAGADDYMVKPFALDELLARLRALTRRSR 122 Query: 121 VSNNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 E + R+ L R E +L + N + + ++ + Sbjct: 123 PEPGPDEAPEHLSFADLTLDPATREVTRGNRRISLTRTEFALLTVFLQNPERVLERSWLL 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI-DWN 223 ++G FD N +E +I LR+K + + + R +GY + + N Sbjct: 183 HEVWG-FDFPTTANSLEVYIGYLRRKTEHDGEARLIHTVRGVGYVLREAN 231 >gi|242240331|ref|YP_002988512.1| two component transcriptional regulator PhoB, winged helix family [Dickeya dadantii Ech703] gi|242132388|gb|ACS86690.1| two component transcriptional regulator PhoB, winged helix family [Dickeya dadantii Ech703] Length = 229 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 37/224 (16%), Positives = 91/224 (40%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A +++ + +G + + ++ ++ L G L Sbjct: 5 ILVVEDEAPIREMVCFVLEQNGYQPVEAEDYDVAVSRLAEPYPELVLLDWML--PGGSGL 62 Query: 62 ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 + + ++ +P++ ++ + + + G DD + KP +E++AR+ A+ RR Sbjct: 63 QFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRR 122 Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + E + + + + E ++L + M + + ++ Q+ + Sbjct: 123 ISPMAVEEVIEMRGLSLDPSSHRVTTEEYALDMGPTEFKLLHFFMTHPERVYSREQLLNH 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + VE+ V+ HI +LRK L V + R GY Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALETTGHDKMVQTVRGTGYRF 225 >gi|225375459|ref|ZP_03752680.1| hypothetical protein ROSEINA2194_01084 [Roseburia inulinivorans DSM 16841] gi|225212656|gb|EEG95010.1| hypothetical protein ROSEINA2194_01084 [Roseburia inulinivorans DSM 16841] Length = 230 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 40/228 (17%), Positives = 86/228 (37%), Gaps = 10/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD + + + + N+ + + ++ G Sbjct: 4 ILIIDDDKELCTLIKRSVQAENIEADFCNTGKEGLQKLREQEYQLVVLDVM--MPGMDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL------ARVAAI 115 E IR +P++ + + + +G DD + KP E++ R Sbjct: 62 ETLEEIRKEYSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRRYTR 121 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + + + +++ + R F LP +E +L Y ++GK + K QI+ Sbjct: 122 FNQQAGAIQKLNFYGLQIDLENRSVTTSNGTFELPPKEFDLLLYCAKHQGKILTKQQIYE 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 ++G + N + + IS+LRKKL N + + + +GY + Sbjct: 182 EVWGEEYFYDDSN-IMAIISRLRKKLEVNPSSPKYIQTVKGIGYRFNK 228 >gi|160892783|ref|ZP_02073573.1| hypothetical protein CLOL250_00314 [Clostridium sp. L2-50] gi|156865824|gb|EDO59255.1| hypothetical protein CLOL250_00314 [Clostridium sp. L2-50] Length = 233 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 43/223 (19%), Positives = 95/223 (42%), Gaps = 6/223 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + ++ G + E + + + D+ I ++ E Sbjct: 7 LVVDDESRMRKLVKDFLSKKGYIVLEAGDGEEAVDIFMNNK-DIGLIILDVMMPKMDGWE 65 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRLK 120 + IR SQVP+I ++ + L F+ G+D+ + KP + + Sbjct: 66 TCKEIRKFSQVPIIMLTAKSDERDELLGFELGIDEYITKPFSPKILVARVEAILRRTSDV 125 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 +++ G I + + GE L +E +L Y M N+G +++ +I + ++ Sbjct: 126 PADSVISAGGITMDLAAHIVTIDGEPIELSYKEFELLNYFMVNKGVALSREKILNNVW-N 184 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 +D + +++H+ KLR KL++K D + + +GY + + Sbjct: 185 YDYFGDARTIDTHVKKLRSKLKDKG--DYIKTIWGMGYKFEVD 225 >gi|307823691|ref|ZP_07653919.1| two component transcriptional regulator, winged helix family [Methylobacter tundripaludum SV96] gi|307734985|gb|EFO05834.1| two component transcriptional regulator, winged helix family [Methylobacter tundripaludum SV96] Length = 226 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 45/225 (20%), Positives = 92/225 (40%), Gaps = 8/225 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L++D + D +G ++E + L S+ + ++ L + Sbjct: 4 LLVEDDERIVDFVQRGLKAEGYAVEVARNGLDAIALGSAGKFQAIILDLGL--PDLNGRQ 61 Query: 63 LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + +R P++ ++ ++Q + SG DD + KP E+LAR+ A+ RR Sbjct: 62 VCERLRDAGVGTPILMLTARDTVQDKVTGLRSGADDYMTKPFAFEELLARIEALMRRRSG 121 Query: 122 SNNRAETGPIRVF----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + + L +E +LE M GK +++T+I + Sbjct: 122 EIKLETKELQVADLLLNGETHEVRRGETLIELTPKEFALLECFMRMPGKVLSRTRILEQV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +G + NVV+ +I +LR+K+ + + + R GY +D Sbjct: 182 WG-YSADPLTNVVDVYIRQLRRKIDDDYELKLLKTVRGFGYKLDV 225 >gi|218133615|ref|ZP_03462419.1| hypothetical protein BACPEC_01484 [Bacteroides pectinophilus ATCC 43243] gi|217990990|gb|EEC56996.1| hypothetical protein BACPEC_01484 [Bacteroides pectinophilus ATCC 43243] Length = 228 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 40/223 (17%), Positives = 93/223 (41%), Gaps = 6/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + ++ + + + E + + D++ I ++ Sbjct: 10 ILVVDDESRMRKLVHDFLARNNYDVIEAANGEEALDIFYEDK-DIALIILDVMMPKMDGW 68 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV--NKPIHHREILARVAAIYRRL 119 E+ IR +S+VP+I ++ + L F+ GVD+ + Sbjct: 69 EVCAEIRRNSKVPIIMLTAKGEERDELQGFELGVDEYISKPFSPKILTARVDAIIRRVYS 128 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 K + E G I + ++ G+ L +E +LEY + N+G +++ +I + ++ Sbjct: 129 KDAGEIIEIGGIEMDKSAHVVKIDGQKIDLSFKEFELLEYFIDNKGIALSREKILNNVW- 187 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D + +++H+ KLRKK+ K + + + +GY + Sbjct: 188 NYDYFGDARTIDTHVKKLRKKMGEKG--EYIKTIWGMGYKFEV 228 >gi|311896370|dbj|BAJ28778.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 224 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 48/223 (21%), Positives = 89/223 (39%), Gaps = 5/223 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L +D + + +G + S D+ ++ L LE Sbjct: 5 LLAEDDPAISEPLARALRREGYEVLVREDGPAALGAGLSEDVDLIVLDLGL--PEMDGLE 62 Query: 63 LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R +RA P++ ++ T+ D+G DD V KP E+LARV A+ RR V Sbjct: 63 VCRRLRADGKSFPVLVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGNV 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 +++ + + E L +E +L L+ + G+ V + +I ++ Sbjct: 123 DQLTTGAHGVKIDIESHRAWLGEEELTLSAKEFELLRVLVRDAGRVVTREEIMRQVWDTT 182 Query: 182 DEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDWN 223 ++ HIS LRKKL + + + R +G+ + N Sbjct: 183 -WWTSTKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEKN 224 >gi|229103829|ref|ZP_04234509.1| Two-component response regulator [Bacillus cereus Rock3-28] gi|228679705|gb|EEL33902.1| Two-component response regulator [Bacillus cereus Rock3-28] Length = 228 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 50/227 (22%), Positives = 94/227 (41%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ ++G+ + L D+ ++ + Sbjct: 5 ILIVDDDKEIRNLISVYLENEGLKTQKAEDAMEALQLLEEKEFDLIILDIM--MPNMDGI 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E IR + +P+I +S + SG DD ++KP + E++ARV + RR K Sbjct: 63 EACMKIRENRNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 122 Query: 122 SNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N E V +D V+G+ L +E ILE L+ N+G ++ +I+ Sbjct: 123 YNTSIEHNKSILEIGDLTVNTDTCQVWVRGKETRLTPKEFAILELLVRNKGIVLSVAKIY 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220 A++ +N V HI+K+R K+ + + +GY I Sbjct: 183 EAVWKEV-FYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGYKI 228 >gi|225174414|ref|ZP_03728413.1| two component transcriptional regulator, winged helix family [Dethiobacter alkaliphilus AHT 1] gi|225170199|gb|EEG78994.1| two component transcriptional regulator, winged helix family [Dethiobacter alkaliphilus AHT 1] Length = 236 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 36/229 (15%), Positives = 76/229 (33%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ D + + D+ ++ Sbjct: 7 ILVVDDEPKIRRIVEQSLRKDAYRVVHACDGLEALQKLETEHPDLLVLDLM--MPEMDGF 64 Query: 62 ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ + + P+I ++ L+ F+ GVDD V KP E+ RV A+ RR+ Sbjct: 65 EVCKAMRNRGDNTPVIILTAKDELEDKAFGFNLGVDDYVTKPFSPSELALRVKAVLRRVS 124 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFP-------LPRRERRILEYLMANRGKRVAKTQI 173 + L +E +L L N G ++ Q+ Sbjct: 125 GEELAPRLKEGTFDDGRLYINSKTREVRLNGEDVYLTAKEFDLLWVLANNPGVVYSRDQL 184 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 ++G + + V I ++R+K+ + + + +GY + Sbjct: 185 LDMVWGN-EYFGDAGTVTVLIRRIREKIEKDPANPTYLRTVWGIGYKFE 232 >gi|197119324|ref|YP_002139751.1| winged-helix phosphate transcriptional response regulator [Geobacter bemidjiensis Bem] gi|197088684|gb|ACH39955.1| winged-helix phosphate transcriptional response regulator [Geobacter bemidjiensis Bem] Length = 225 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 44/225 (19%), Positives = 91/225 (40%), Gaps = 10/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++I+D + D +G + + D+ ++ L G E Sbjct: 5 LVIEDEKDLADLVAFHLEQEGYCCLVAHDGATGLAEARRCKPDLILLDLML--PGMMGTE 62 Query: 63 LPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 + R ++ + +P+I ++ + F+ G DD V KP RE++ RV A+ RR Sbjct: 63 VCRTLKGAELTAGIPVIMLTARGEEIDRVVGFEMGADDYVVKPFSTRELMLRVRAVLRRK 122 Query: 120 KVSNNRAETGPIR--VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 ++ A + + V GE L E ++L L G+ ++ + + Sbjct: 123 LPASEVATISLGALLIDVERHLVRVAGEEVQLTSTEFKLLMNLAERIGRVQSRELLLQNV 182 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +G + + V++H+++LR KL + + + R GY ++ Sbjct: 183 WG-YSYLGDTRTVDTHMTRLRTKLGAAG--ELIKTVRGFGYKLEE 224 >gi|229173900|ref|ZP_04301438.1| DNA-binding response regulator [Bacillus cereus MM3] gi|228609538|gb|EEK66822.1| DNA-binding response regulator [Bacillus cereus MM3] Length = 225 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 42/221 (19%), Positives = 93/221 (42%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L DD +++ +G + + + + ++ ++ Sbjct: 6 ILLADDDKHIRELLHYHLQKEGFKVFEAEDGKVAQGVLEKENIHLAIVDIM--MPFVDGY 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L IR + +P+I ++ L F SG DD + KP E++ R+ A+ RR ++ Sbjct: 64 TLCEEIRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQM 123 Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + T + G + + G+ LP +E +L L + G+ ++ ++ ++G+ Sbjct: 124 LSADIITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM 183 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D +E V+ H+ +LR + + + + R LGY ++ Sbjct: 184 -DFEGDERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 223 >gi|221633255|ref|YP_002522480.1| two-component response regulator [Thermomicrobium roseum DSM 5159] gi|221155928|gb|ACM05055.1| two-component response regulator [Thermomicrobium roseum DSM 5159] Length = 224 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 44/220 (20%), Positives = 92/220 (41%), Gaps = 5/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A + DG ++ D+ ++ L G Sbjct: 4 ILVVEDDARIAKILELFLRRDGHTVVTVADGTAALARFEQEHPDLVILDLML--PGTHGR 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120 ++ R +R P++ ++ + ++ D G DD V KP E+LARV A + R Sbjct: 62 DVCRALRLRHATPILMLTALDDERDIVEGLDLGADDYVTKPFKPNELLARVRALLRRASG 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 G IR+ + R + E L RE +L L++ G+ +++ ++ ++ Sbjct: 122 PPVRELVYGDIRIDREARTVFIDDEPVTLRPREFDLLLALVSQAGRIISRQRLLQQVWCD 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + ++ H+++LR+KL+ ++S R +GY + Sbjct: 182 HEIDEASRTLDVHVNRLRQKLQK--SRVRIESIRGIGYRL 219 >gi|160945822|ref|ZP_02093048.1| hypothetical protein FAEPRAM212_03355 [Faecalibacterium prausnitzii M21/2] gi|158443553|gb|EDP20558.1| hypothetical protein FAEPRAM212_03355 [Faecalibacterium prausnitzii M21/2] Length = 230 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 32/222 (14%), Positives = 85/222 (38%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + DG + + D+ ++ L Sbjct: 4 ILIVEDDSFLNKMVAYNLTADGYGVTSALNARTAAEAIRQREFDLVLLDINL--PDGNGF 61 Query: 62 ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH---REILARVAAIYR 117 EL ++I H +I ++ + ++ G D + KP + + + A+ Sbjct: 62 ELCKLIKPQHPDTIVIFLTANDQESDQIRGYEVGAVDYITKPFVIGALQRKIKAMFAMLE 121 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 K + + + G + + + + G+ L E ++L N + + + Q+ + Sbjct: 122 HHKPAKDIYDDGRLFLDFSEQTASLNGKPLTLSPMEYKMLNLFRKNPRQVLTRGQLLEKL 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 + + + V+E+ + + IS++R K+ + G + + +GY Sbjct: 182 WDIDERFVDEHTLTTSISRIRSKIESDGGAPYIKTVYGMGYQ 223 >gi|57650905|ref|YP_187163.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus COL] gi|151222475|ref|YP_001333297.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus str. Newman] gi|81693861|sp|Q5HDJ4|HSSR_STAAC RecName: Full=Heme response regulator hssR gi|187609572|sp|A6QJK3|HSSR_STAAE RecName: Full=Heme response regulator hssR gi|57285091|gb|AAW37185.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus COL] gi|150375275|dbj|BAF68535.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus str. Newman] Length = 224 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 49/220 (22%), Positives = 99/220 (45%), Gaps = 4/220 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + + + + S E L R D++ ++ G + Sbjct: 5 LVVDDDPRILNYIASHLQIEHIDAYTQPSGEAALKLLEKQRVDIAVVDIM--MDGMDGFQ 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L ++ +P+I ++ +L F SG DD V KP +E++ R+ A+ RR ++ Sbjct: 63 LCNTLKNDYDIPVIMLTARDALSDKERAFISGTDDYVTKPFEVKELIFRIRAVLRRYNIN 122 Query: 123 NNRAETGPIRVFSDGR-DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 +N T + + +V + LP +E ++L L A + + QI I+G + Sbjct: 123 SNSEMTIGNLTLNQSYLELQVSNKTMTLPNKEFQLLFMLAARPKQIFTREQIIEKIWG-Y 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D +E V+ HI +LR++L+ +++ R GY ++ Sbjct: 182 DYEGDERTVDVHIKRLRQRLKKLNATLTIETVRGQGYKVE 221 >gi|157155282|ref|YP_001463431.1| DNA-binding transcriptional regulator BaeR [Escherichia coli E24377A] gi|187730866|ref|YP_001879801.1| DNA-binding transcriptional regulator BaeR [Shigella boydii CDC 3083-94] gi|193069293|ref|ZP_03050249.1| DNA-binding response regulator BaeR [Escherichia coli E110019] gi|194431476|ref|ZP_03063768.1| DNA-binding response regulator BaeR [Shigella dysenteriae 1012] gi|209919543|ref|YP_002293627.1| DNA-binding transcriptional regulator BaeR [Escherichia coli SE11] gi|218554646|ref|YP_002387559.1| DNA-binding transcriptional regulator BaeR [Escherichia coli IAI1] gi|218695701|ref|YP_002403368.1| DNA-binding transcriptional regulator BaeR [Escherichia coli 55989] gi|260856059|ref|YP_003229950.1| DNA-binding response regulator BaeR in two-component regulatory system with BaeS [Escherichia coli O26:H11 str. 11368] gi|260868788|ref|YP_003235190.1| DNA-binding response regulator BaeR in two-component regulatory system with BaeS [Escherichia coli O111:H- str. 11128] gi|300818923|ref|ZP_07099128.1| response regulator receiver domain protein [Escherichia coli MS 107-1] gi|300821816|ref|ZP_07101961.1| response regulator receiver domain protein [Escherichia coli MS 119-7] gi|300902275|ref|ZP_07120272.1| response regulator receiver domain protein [Escherichia coli MS 84-1] gi|301304482|ref|ZP_07210593.1| response regulator receiver domain protein [Escherichia coli MS 124-1] gi|301643523|ref|ZP_07243567.1| response regulator receiver domain protein [Escherichia coli MS 146-1] gi|309792958|ref|ZP_07687386.1| response regulator receiver domain protein [Escherichia coli MS 145-7] gi|331653508|ref|ZP_08354509.1| transcriptional regulatory protein BaeR [Escherichia coli M718] gi|331668775|ref|ZP_08369623.1| transcriptional regulatory protein BaeR [Escherichia coli TA271] gi|331677990|ref|ZP_08378665.1| transcriptional regulatory protein BaeR [Escherichia coli H591] gi|331683763|ref|ZP_08384359.1| transcriptional regulatory protein BaeR [Escherichia coli H299] gi|157077312|gb|ABV17020.1| DNA-binding response regulator BaeR [Escherichia coli E24377A] gi|187427858|gb|ACD07132.1| DNA-binding response regulator BaeR [Shigella boydii CDC 3083-94] gi|192957426|gb|EDV87873.1| DNA-binding response regulator BaeR [Escherichia coli E110019] gi|194420301|gb|EDX36378.1| DNA-binding response regulator BaeR [Shigella dysenteriae 1012] gi|209912802|dbj|BAG77876.1| two-component response regulator [Escherichia coli SE11] gi|218352433|emb|CAU98207.1| DNA-binding response regulator in two-component regulatory system with BaeS [Escherichia coli 55989] gi|218361414|emb|CAQ99001.1| DNA-binding response regulator in two-component regulatory system with BaeS [Escherichia coli IAI1] gi|257754708|dbj|BAI26210.1| DNA-binding response regulator BaeR in two-component regulatory system with BaeS [Escherichia coli O26:H11 str. 11368] gi|257765144|dbj|BAI36639.1| DNA-binding response regulator BaeR in two-component regulatory system with BaeS [Escherichia coli O111:H- str. 11128] gi|300405637|gb|EFJ89175.1| response regulator receiver domain protein [Escherichia coli MS 84-1] gi|300525658|gb|EFK46727.1| response regulator receiver domain protein [Escherichia coli MS 119-7] gi|300528542|gb|EFK49604.1| response regulator receiver domain protein [Escherichia coli MS 107-1] gi|300840208|gb|EFK67968.1| response regulator receiver domain protein [Escherichia coli MS 124-1] gi|301078096|gb|EFK92902.1| response regulator receiver domain protein [Escherichia coli MS 146-1] gi|308123244|gb|EFO60506.1| response regulator receiver domain protein [Escherichia coli MS 145-7] gi|315255409|gb|EFU35377.1| response regulator receiver domain protein [Escherichia coli MS 85-1] gi|320179499|gb|EFW54454.1| Response regulator BaeR [Shigella boydii ATCC 9905] gi|323152300|gb|EFZ38589.1| transcriptional regulatory protein baeR [Escherichia coli EPECa14] gi|323172671|gb|EFZ58305.1| transcriptional regulatory protein baeR [Escherichia coli LT-68] gi|323177024|gb|EFZ62614.1| transcriptional regulatory protein baeR [Escherichia coli 1180] gi|324019615|gb|EGB88834.1| response regulator receiver domain protein [Escherichia coli MS 117-3] gi|324119108|gb|EGC12997.1| response regulator receiver domain-containing protein [Escherichia coli E1167] gi|331048357|gb|EGI20433.1| transcriptional regulatory protein BaeR [Escherichia coli M718] gi|331063969|gb|EGI35880.1| transcriptional regulatory protein BaeR [Escherichia coli TA271] gi|331074450|gb|EGI45770.1| transcriptional regulatory protein BaeR [Escherichia coli H591] gi|331078715|gb|EGI49917.1| transcriptional regulatory protein BaeR [Escherichia coli H299] gi|332092359|gb|EGI97433.1| transcriptional regulatory protein baeR [Shigella dysenteriae 155-74] Length = 240 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 43/224 (19%), Positives = 88/224 (39%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + I + + + D+ ++ L G L Sbjct: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLML--PGTDGL 70 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 L R IR S +P++ ++ L + G DD + KP RE++ARV + Sbjct: 71 TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + P+ + +G++ L E R+L+ L GK ++ + + +Y Sbjct: 131 QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREHLLNHLY 190 Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + V + ++SHI LR+KL + + + +GY + Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 >gi|325263093|ref|ZP_08129828.1| DNA-binding response regulator [Clostridium sp. D5] gi|324031486|gb|EGB92766.1| DNA-binding response regulator [Clostridium sp. D5] Length = 226 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 39/220 (17%), Positives = 88/220 (40%), Gaps = 3/220 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 L++D + I L +G + ++ + + D++ ++ L Sbjct: 4 IFLVEDDKAIAKNLILLLRSEGFEVTHASTRAEAFNVLEGNKFDLALVDISL--PDGNGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + I+ +P+I ++ + + + G DD + KP RE++AR+ R+ Sbjct: 62 TVCTEIKDTQDIPVIFLTASGDEASVVTGLNMGADDYITKPFRPRELIARIGTALRKSVR 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 S E ++V + + G L E R+L + N + + ++ ++ Sbjct: 122 SGAAIEICGLQVDTASGVVKKDGREVFLSALEYRLLLVFVNNPKSIITRGRLLDELWDAA 181 Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 E V +N + +I +LR+K+ + + + R GY + Sbjct: 182 GEFVNDNTLTVYIKRLREKIERDPANPQIILTVRGTGYRL 221 >gi|295108640|emb|CBL22593.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus obeum A2-162] Length = 229 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 47/227 (20%), Positives = 86/227 (37%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + D G +E N + D+ ++ L Sbjct: 4 ILIIEDEEAIADLEKDYLELSGFEVEIANRGDVGLEKALKEEYDLIILDLML--PEVDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R +R +P+I +S + G DD + KP E++ARV A R Sbjct: 62 DICRQVRQEKNIPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHMERYNR 121 Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N+ E I++ R V GE +E +L +L N + K ++F Sbjct: 122 LVGSVAVKNDIIEIRGIKIDKTARRIWVNGEEKTFTTKEFDLLTFLAENPNRVFTKAELF 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 I+ + + + V HI K+R+K+ N +++ +GY Sbjct: 182 RQIWDM-ESVGDIATVTVHIKKIREKIEFNTAKPQYIETIWGVGYRF 227 >gi|15612935|ref|NP_241238.1| two-component response regulator [Bacillus halodurans C-125] gi|10172985|dbj|BAB04091.1| two-component response regulator [Bacillus halodurans C-125] Length = 222 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 42/223 (18%), Positives = 89/223 (39%), Gaps = 10/223 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + +G + S + D+ ++ L L Sbjct: 4 ILIIEDEKKIARVLQLELEHEGYETDAAFSGSDGLETFQAHAWDLVLLDVML--PELSGL 61 Query: 62 ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYR 117 E+ R I P+I ++ S+ + D G +D + KP E + + Sbjct: 62 EVLRRIRMTDPVTPIILLTARNSIPDKVSGLDLGANDYITKPFEIEELLARVRACLRTVQ 121 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + + + RD + E L +E +L + + N+G+ +++ QI + + Sbjct: 122 TRERVEDTLMFQELTINEKTRDVQRGNETIELTPKEFELLVFFIKNKGQVLSREQILTNV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G FD + NV++ ++ LRKKL + + + R +GY + Sbjct: 182 WG-FDYYGDTNVIDVYVRYLRKKL---SLTEALQTVRGVGYRL 220 >gi|182420008|ref|ZP_02951242.1| transcriptional regulatory protein ResD [Clostridium butyricum 5521] gi|237669491|ref|ZP_04529471.1| transcriptional regulatory protein ResD [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376045|gb|EDT73632.1| transcriptional regulatory protein ResD [Clostridium butyricum 5521] gi|237654935|gb|EEP52495.1| transcriptional regulatory protein ResD [Clostridium butyricum E4 str. BoNT E BL5262] Length = 228 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 39/223 (17%), Positives = 90/223 (40%), Gaps = 7/223 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + G + + + + + L D+ ++ + ++ Sbjct: 9 LIVDDDENICEVIDMYLKSVGFNTKIALNGKEAKMLYMDYNPDLVLLDMMI--PQVDGID 66 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRRL 119 + + IR + P+I I+ + + G DD + KP +E + V Y Sbjct: 67 VLKWIRKQGERPVIMITAKGDTFDKVLALELGADDYIVKPFEPKELLARVKAVLRRYSVD 126 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 N + + + S G+ +P +E +L YL +N+ K + Q+ ++G Sbjct: 127 NDKNQVIKLSDLVIDSTSYKVIYDGKDIKMPPKEFELLYYLASNKNKVFTREQLLCEVWG 186 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D + V+ H+ +LR+KL + +++ +GY + Sbjct: 187 -YDYPGDSRTVDVHVKRLREKL-SGGEQWQIETVWGVGYKFEV 227 >gi|89893944|ref|YP_517431.1| hypothetical protein DSY1198 [Desulfitobacterium hafniense Y51] gi|219668318|ref|YP_002458753.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|89333392|dbj|BAE82987.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219538578|gb|ACL20317.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 231 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 45/224 (20%), Positives = 84/224 (37%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD + +G L + D+ ++ Sbjct: 4 LLIADDNKQITSILEEYAKKEGYQPHIAWDGCAALELFQQLQPDLVLLDVM--MPKVDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR S VP+I I+ + D G DD + KP E++AR+ AI RR+ Sbjct: 62 EVCREIRKTSNVPIIMITARGEDFERIMGLDIGADDYIVKPFSPGEVMARIRAILRRISQ 121 Query: 122 SNNRAETGPIRVFSDGRDPEV----QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 ++ + + L ++E IL L N + ++ + +++ Sbjct: 122 NDEEKKQILSYANLMINLDDYLVTIDQCPVSLTKKEIEILWTLATNHNRVFSRDNLLNSV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220 +G +D + V+SHI +LR KL + + + +GY Sbjct: 182 WG-YDYFGDIRTVDSHIKRLRSKLDSFPHEQWEIKTIWGVGYKF 224 >gi|322411361|gb|EFY02269.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 235 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 42/231 (18%), Positives = 84/231 (36%), Gaps = 15/231 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L+DD + +G S + L + D ++ L + Sbjct: 5 ILLVDDEEHILRLLDYHLSKEGFSTQLVTDGRKALTLAETEPFDFILLDIML--PRLDGI 62 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILA 110 E+ + +RA + P++ +S + + G DD + KP R + Sbjct: 63 EVCKRLRAKAIKTPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELVARVKAILRRTS 122 Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + ++ G + V+ D + + L +E +L YLM + + + Sbjct: 123 KEQQEDDTDDFRDDYRVFGALTVYPDRHEVYKADHLLSLTPKEFELLLYLMKHPNMTLTR 182 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++ I+G +D E +V+ HI KLR K+ + + + R GY Sbjct: 183 ERLLERIWG-YDFGQETRLVDVHIGKLRDKIEDNPKDPQFIQTIRGYGYKF 232 >gi|296332216|ref|ZP_06874679.1| two-component response regulator (YcbM) [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|296150708|gb|EFG91594.1| two-component response regulator (YcbM) [Bacillus subtilis subsp. spizizenii ATCC 6633] Length = 230 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 41/227 (18%), Positives = 82/227 (36%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + + +G + E L D+ ++ L + Sbjct: 4 ILLVEDDHSISEMVDHYLTKEGFEMVHAFDGEEGIRLFKQDSYDLILLDIML--PKLNGM 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI-------LARVAA 114 + +IIR S +P++ IS G DD + KP E+ + R Sbjct: 62 DFLKIIREKSNIPVLMISAKDGDVDKALGLGFGADDYIAKPFSMIELTARVKAAIRRATQ 121 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N + + D GE L E ++L AN K K QI+ Sbjct: 122 YSAEEPAENKVIRIHQLAIDIDNVSVLKNGEPLQLTSTEWQLLCLFAANPKKVFTKEQIY 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 +++ + ++N++ H+ +LR+K+ + + + +GY + Sbjct: 182 RSVWNE-EYFGDQNIINVHMRRLREKIEDDPSSPQYIKTLWGIGYKL 227 >gi|310828642|ref|YP_003960999.1| two component transcriptional regulator [Eubacterium limosum KIST612] gi|308740376|gb|ADO38036.1| two component transcriptional regulator [Eubacterium limosum KIST612] Length = 228 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 40/225 (17%), Positives = 89/225 (39%), Gaps = 10/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A + D +G +E + S D+ ++ L Sbjct: 5 ILVVDDEAAIVDLIKMELDFEGYQVETAYDGQEAIEKAQSFEPDLIVLDIML--PKVNGY 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + + VP+I ++ + + + G DD + KP +RE+LAR+ A RR Sbjct: 63 DVCKTLTPMMDVPIILLTAKTDIIDKVLGLELGADDYLTKPFDNRELLARIKAHLRRATK 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQG------EVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + +T + + + L +E +L L +N + + + Sbjct: 123 APAAKKTDAVIKNGPLSIMPDERTVLLDGKEVHLTPKEFDLLYLLASNLEQVFPRDTLLE 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I+G +D + V+ H+ ++R+K+ + + + +GY + Sbjct: 183 KIWG-YDYYGDTRTVDMHVQRIRRKIDTQPN-KFIQTVFGIGYKM 225 >gi|303327856|ref|ZP_07358296.1| phosphate regulon transcriptional regulator PhoB [Desulfovibrio sp. 3_1_syn3] gi|302862217|gb|EFL85151.1| phosphate regulon transcriptional regulator PhoB [Desulfovibrio sp. 3_1_syn3] Length = 226 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 46/224 (20%), Positives = 89/224 (39%), Gaps = 10/224 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +++ +G S+ + L + ++ L Sbjct: 6 ILVVEDESDIRELLRFNLEREGFSVLEAEDGQKGLELARRHLPCLIILDVMLPA--LDGF 63 Query: 62 ELPRII---RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 E+ R + S +P++ ++ + G DD V KP RE++ R+ AI RR Sbjct: 64 EVSRRLGGQAETSAIPVLMLTARGEEMDRVVGLSLGADDYVVKPFSVRELMLRIKAILRR 123 Query: 119 LKVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 A E IR+ D L E R+LE L+ + G + Q+ + Sbjct: 124 GGRVAESALLERHGIRLRPDAHTASAGERELVLTATEFRLLEDLLRHAGTVRTREQLLNN 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + V++H+ +LR KL +++ R +GY I Sbjct: 184 VWG-YSFEGYARTVDTHVRRLRSKLGEAAAA--LETVRGVGYRI 224 >gi|295110688|emb|CBL24641.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus obeum A2-162] Length = 222 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 52/223 (23%), Positives = 97/223 (43%), Gaps = 6/223 (2%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEK 59 M ++D +++ I G S +G + + D+ ++ L G G Sbjct: 1 MIYCVEDEKNIRELLIYTLETTGFSAKGMANAKELRIALKEELPDLILLDIMLPGEDGYS 60 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +LE ++ R +P+I ++ + + ++G DD + KP E +ARV A+ RR Sbjct: 61 ILESLKLSRDTRGIPVIMVTAKEAEYDKVKGLEAGADDYITKPFGMMEFVARVKAVLRRC 120 Query: 120 KVSNNRAETGPIR--VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + E + + L R+E +L+YLM N+G +++ QI + Sbjct: 121 SKQEDDKELRTGDLSLSVGRHKVRWKDTSVELTRKEFELLQYLMENKGLVMSRNQILCHV 180 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G +D E V+ H+ LR+KL +++ R +GY I Sbjct: 181 WG-YDFDGETRTVDVHVRTLRQKLGEAGN--LIETVRGVGYRI 220 >gi|187932993|ref|YP_001886720.1| ResD family transcriptional regulator [Clostridium botulinum B str. Eklund 17B] gi|187721146|gb|ACD22367.1| transcriptional regulatory protein ResD [Clostridium botulinum B str. Eklund 17B] Length = 223 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 44/223 (19%), Positives = 98/223 (43%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++ DG ++ + E + S + D+ ++ L Sbjct: 5 ILIVEDELKIRFLIRDYLLKDGFNIFEASDGEEGLFQFSKEKIDLIILDIM--MPKMNGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119 E+ +R S VP+I ++ + L+ + G DD + KP + ++A+V A R Sbjct: 63 EMLEKLREVSNVPVIFLTAKGEEEDKLEGYQFGADDYMTKPFSPKVLVAKVKALLKRTRE 122 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + ++ + V + +V ++ L +E +L YL+ N +++ I ++G Sbjct: 123 DLDSSIQNFNGLSVNQLSHEVKVNDKIILLSPKEYELLIYLINNESIALSRDNILDNVWG 182 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + D + V+++I +LR+KL +K + + R GY + Sbjct: 183 I-DYYGDIRTVDTNIKRLREKLLDKSS--YIVTVRGSGYKFEV 222 >gi|5759261|gb|AAD51056.1|AF175293_1 response regulator [Enterococcus faecium] Length = 232 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 46/232 (19%), Positives = 91/232 (39%), Gaps = 15/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +DG ++ F + + S D++ ++ L Sbjct: 5 ILVVDDEKELADLVEVYLKNDGYTVYKFYNGKDALKCIESVELDLAILDIML--PDVDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + IR P+I ++ S DD + KP + E++ARV A R+ Sbjct: 63 QICQKIREKFYFPVIMLTA-KVEDGDKIMGLSVADDYITKPFNPLELVARVKAQLRQYMR 121 Query: 122 SNNR----------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + + + + G+ L E IL YL +G V+ Sbjct: 122 YKQPGIKQEAERTEYDIRGMTISKSSHKCILFGKEIQLTPTEFSILWYLCERQGTVVSTE 181 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 ++F A++G N V +HI +LR+K++ + + +GY+I+ Sbjct: 182 ELFEAVWGERFFD-SNNTVMAHIGRLREKMKEPSRNPKFIKTVWGVGYTIEK 232 >gi|28211540|ref|NP_782484.1| transcriptional regulatory protein [Clostridium tetani E88] gi|28203981|gb|AAO36421.1| transcriptional regulatory protein [Clostridium tetani E88] Length = 235 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 45/230 (19%), Positives = 88/230 (38%), Gaps = 12/230 (5%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + +++DD +++ L +G + ++ + D+ ++ G Sbjct: 9 IILIVDDDEEIREIINILLSREGFVVWEASNANTAMAML-EKPVDLIILDIM--MPGRNG 65 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112 EL IR + VP++ +S + F G DD + KP E + Sbjct: 66 FELCTEIRKITTVPILFLSAKTQDIDKEEGFCCGGDDYLIKPFSQSELLLRIKALLRRFF 125 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 ++N + G + V + + G+ L E +IL +L+ NR K ++ + Sbjct: 126 VYQGVNNVSTDNTIKLGDLNVDFETGKVCINGDKVSLTGIEYQILSFLLHNRKKVLSARE 185 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 I+ ++ + N + HI LR+KL L + + GY ID Sbjct: 186 IYEHVWQEPFLPLSNNTIMVHIKNLRRKLEKDLQKPQYIRTIWGKGYYID 235 >gi|82751956|ref|YP_417697.1| two-component response regulator [Staphylococcus aureus RF122] gi|123549423|sp|Q2YZ24|HSSR_STAAB RecName: Full=Heme response regulator hssR gi|82657487|emb|CAI81929.1| two-component response regulator [Staphylococcus aureus RF122] Length = 224 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 49/220 (22%), Positives = 99/220 (45%), Gaps = 4/220 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + + + + + S E L R D++ I+ G + Sbjct: 5 LVVDDDSRILNYIASHLQTEHIDAYTQPSGEAALKLLEKQRVDIAVIDIM--MDGMDGFQ 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L ++ +P+I ++ +L F SG DD V KP +E++ R+ A+ RR ++ Sbjct: 63 LCNTLKNDYDIPVIMLTARDALSDKERAFISGTDDYVTKPFEVKELIFRIRAVLRRYNIN 122 Query: 123 NNRAETGPIRVFSDGR-DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 +N T + + +V + LP +E ++L L + + QI I+G + Sbjct: 123 SNSEMTIGNLTLNQSYLELQVSNKTMTLPNKEFQLLFMLATRPKQIFTREQIIEKIWG-Y 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D +E V+ HI +LR++L+ +++ R GY ++ Sbjct: 182 DYEGDERTVDVHIKRLRQRLKKLNATLTIETVRGQGYKVE 221 >gi|240172611|ref|ZP_04751270.1| DNA-binding response regulator MtrA [Mycobacterium kansasii ATCC 12478] Length = 228 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 43/220 (19%), Positives = 85/220 (38%), Gaps = 5/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A + + + +G R D+ ++ L G + Sbjct: 8 ILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDLML--PGMNGI 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R++RA S VP++ ++ + +SG DD + KP +E++ARV A RR Sbjct: 66 DVCRVLRADSGVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRRNDD 125 Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + GE L E +L L + + + ++G Sbjct: 126 EPAEMLSIADVDIDVPAHKVTRNGEQISLTPLEFDLLVALARKPRQVFTRDVLLEQVWG- 184 Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219 + + +V H+ +LR K+ + V + R +GY Sbjct: 185 YRHPADTRLVNVHVQRLRAKVEKDPENPTVVLTVRGVGYK 224 >gi|298493190|ref|YP_003723367.1| winged helix family two component transcriptional regulator ['Nostoc azollae' 0708] gi|298235108|gb|ADI66244.1| two component transcriptional regulator, winged helix family ['Nostoc azollae' 0708] Length = 247 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 46/228 (20%), Positives = 92/228 (40%), Gaps = 9/228 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++IDD + + G + + L + D+ ++ L G + Sbjct: 4 ILVIDDDPAISELVAVNLEMAGYDVSQAEDGIKGQALALQLQPDLIMLDLMLPRVDGFTI 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R +++P++ ++ Q ++ F++G DD + KP E+LARV A+ RR Sbjct: 64 CQRLRRDERTAEIPVLMLTALSQTQYKVEGFNAGADDYLTKPFEVEEMLARVRALLRRTD 123 Query: 121 VSNNRAETGPIRVF------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 A+ I + + + GE L E +L L+ G+ V+ ++I Sbjct: 124 RIPQAAKHSEILNYGSLTLVPERFEAIWFGETVKLTHLEFELLHCLLQRHGQTVSPSEIL 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 ++G +D + + HI LR KL + + + GY ++ Sbjct: 184 REVWG-YDPDDDIETIRVHIRHLRTKLEPDPRHPRYIKTVYGAGYCLE 230 >gi|160947611|ref|ZP_02094778.1| hypothetical protein PEPMIC_01546 [Parvimonas micra ATCC 33270] gi|158446745|gb|EDP23740.1| hypothetical protein PEPMIC_01546 [Parvimonas micra ATCC 33270] Length = 227 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 40/227 (17%), Positives = 92/227 (40%), Gaps = 8/227 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D ++ +G + S E L V ++ L G Sbjct: 4 ILLVEDEENIRLFTKINLEREGFEVLEAESGEIGVELALKYNPQVVILDVML--PGIDGF 61 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYR 117 E+ +I+R ++ +I ++ ++ +SG DD ++KP + E + + Sbjct: 62 EVCKILREKLPKIGIIMLTAKTQDVDRINGLESGTDDYLSKPFNPVELILRIKSLIRRLD 121 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 ++ S++ P R+ + G+ L E I+ M+N GK ++ ++ + Sbjct: 122 SIQNSSDLINIYPFRLDLYSKSFYKDGKEIELTPTELTIITIFMSNPGKAFSRNELLNMT 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDWN 223 +G + + +V+ +I +LR K+ + +++ GY + N Sbjct: 182 WGE-EFEGDIKIVDVNIRRLRAKIEDNSSKPKYIETVWGTGYRWNSN 227 >gi|15893613|ref|NP_346962.1| response regulator [Clostridium acetobutylicum ATCC 824] gi|15023165|gb|AAK78302.1|AE007546_8 Response regulator (CheY-like domain, HTH domain) [Clostridium acetobutylicum ATCC 824] gi|325507735|gb|ADZ19371.1| Response regulator (CheY-like domain, HTH domain) [Clostridium acetobutylicum EA 2018] Length = 230 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 42/228 (18%), Positives = 83/228 (36%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + + ++ S + ++ ++ L Sbjct: 4 ILIIEDETSIAELEKDYLELSNFKVDIEVSGKTGLEAAKEKNYELIILDLML--PEIDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IR P++ +S + G DD + KP E++ARV A R + Sbjct: 62 EICKQIRKIKNTPILMVSAKKEDIDKIRGLGLGADDYMTKPFSPSELVARVKAHISRYER 121 Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 N + + R V G+ +E +L +L N + +K ++ Sbjct: 122 LVNSSNKNLDDEIEIRGLNINKASRKVFVNGKESQFTAKEFDLLVFLAQNPDRVFSKEEL 181 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220 F I+G+ D E V HI K+R+K+ + +++ GY Sbjct: 182 FDKIWGM-DSFGEIATVTVHIKKIREKIEKDTSNPEYIETVWGAGYRF 228 >gi|33416267|ref|NP_878013.1| vancomycin response regulator VanR [Staphylococcus aureus] gi|121633842|ref|YP_976080.1| VanR protein [Enterococcus faecium] gi|124112009|ref|YP_001019038.1| VanR protein [Enterococcus faecium] gi|190606514|ref|YP_001974799.1| VanR protein [Enterococcus faecium] gi|197103114|ref|YP_002128396.1| VanR protein [Enterococcus faecium] gi|256965580|ref|ZP_05569751.1| vancomycin response regulator VanR [Enterococcus faecalis HIP11704] gi|257880769|ref|ZP_05660422.1| transcription regulator [Enterococcus faecium 1,230,933] gi|257883393|ref|ZP_05663046.1| vancomycin response regulator VanR [Enterococcus faecium 1,231,502] gi|257891275|ref|ZP_05670928.1| vancomycin response regulator VanR [Enterococcus faecium 1,231,410] gi|293384653|ref|ZP_06630512.1| regulatory protein VanR [Enterococcus faecalis R712] gi|293387045|ref|ZP_06631612.1| regulatory protein VanR [Enterococcus faecalis S613] gi|293567296|ref|ZP_06678649.1| vancomycin response regulator VanR [Enterococcus faecium E1071] gi|294617747|ref|ZP_06697365.1| regulatory protein VanR [Enterococcus faecium E1679] gi|305678704|ref|YP_003864123.1| VanR [Enterococcus faecalis] gi|312907837|ref|ZP_07766825.1| regulatory protein VanR [Enterococcus faecalis DAPTO 512] gi|312979123|ref|ZP_07790833.1| regulatory protein VanR [Enterococcus faecalis DAPTO 516] gi|313247850|ref|YP_004033012.1| two component regulator protein [Enterococcus faecalis] gi|314944050|ref|ZP_07850716.1| regulatory protein VanR [Enterococcus faecium TX0133C] gi|314949575|ref|ZP_07852901.1| regulatory protein VanR [Enterococcus faecium TX0082] gi|314995084|ref|ZP_07860203.1| regulatory protein VanR [Enterococcus faecium TX0133a01] gi|320152796|ref|YP_004172619.1| VanR [Enterococcus faecium] gi|586203|sp|Q06239|VANR_ENTFC RecName: Full=Regulatory protein vanR gi|21886739|gb|AAM77882.1|AF516335_2 cytoplasmic regulator [Enterococcus faecium] gi|148327|gb|AAA24787.1| vancomycin response regulator [Enterococcus faecium] gi|148332|gb|AAA24790.1| vanR [Enterococcus faecium] gi|155039|gb|AAA65953.1| vanR [Enterococcus faecium] gi|33390951|gb|AAQ17157.1| vancomycin response regulator VanR [Staphylococcus aureus] gi|60391955|gb|AAX19281.1| transcriptional response regulator [Paenibacillus thiaminolyticus] gi|110556107|dbj|BAE98126.1| vanR [Enterococcus faecalis] gi|121490901|emb|CAL36537.1| VanR protein [Enterococcus faecium] gi|124012111|emb|CAL90943.1| VanR protein [Enterococcus faecium] gi|186886502|gb|ACC93630.1| VanR [Enterococcus faecium] gi|190350284|emb|CAP62634.1| VanR protein [Enterococcus faecium] gi|196158936|emb|CAP70011.1| VanR protein [Enterococcus faecium] gi|227069719|gb|ACP19233.1| response regulator VanR [Enterococcus faecium] gi|256956076|gb|EEU72708.1| vancomycin response regulator VanR [Enterococcus faecalis HIP11704] gi|257814997|gb|EEV43755.1| transcription regulator [Enterococcus faecium 1,230,933] gi|257819051|gb|EEV46379.1| vancomycin response regulator VanR [Enterococcus faecium 1,231,502] gi|257827635|gb|EEV54261.1| vancomycin response regulator VanR [Enterococcus faecium 1,231,410] gi|281335163|gb|ADA62247.1| vancomycin response regulator [Enterococcus faecium] gi|283481157|emb|CAZ67068.1| VanR protein [Enterococcus faecium] gi|291078047|gb|EFE15411.1| regulatory protein VanR [Enterococcus faecalis R712] gi|291083530|gb|EFE20493.1| regulatory protein VanR [Enterococcus faecalis S613] gi|291590004|gb|EFF21799.1| vancomycin response regulator VanR [Enterococcus faecium E1071] gi|291595993|gb|EFF27268.1| regulatory protein VanR [Enterococcus faecium E1679] gi|304324955|gb|ADM24835.1| VanR [Enterococcus faecalis] gi|304324997|gb|ADM24876.1| VanR [Enterococcus faecalis] gi|304325039|gb|ADM24917.1| VanR [Enterococcus faecalis] gi|310626169|gb|EFQ09452.1| regulatory protein VanR [Enterococcus faecalis DAPTO 512] gi|311288087|gb|EFQ66643.1| regulatory protein VanR [Enterococcus faecalis DAPTO 516] gi|312837017|dbj|BAJ34903.1| two component regulator protein [Enterococcus faecalis] gi|313590687|gb|EFR69532.1| regulatory protein VanR [Enterococcus faecium TX0133a01] gi|313597355|gb|EFR76200.1| regulatory protein VanR [Enterococcus faecium TX0133C] gi|313644055|gb|EFS08635.1| regulatory protein VanR [Enterococcus faecium TX0082] gi|319739748|gb|ADV60066.1| VanR [Enterococcus faecium] gi|383762|prf||1904198A vanR gene Length = 231 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 45/229 (19%), Positives = 90/229 (39%), Gaps = 10/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D ++ ++ + + + + D++ ++ L G L Sbjct: 5 ILIVDDEHEIADLVELYLKNENYTVFKYYTAKEALECIDKSEIDLAILDIML--PGTSGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + IR P+I ++ + + G DD + KP E++ARV A RR K Sbjct: 63 TICQKIRDKHTYPIIMLTGKDTEVDKITGLTIGADDYITKPFRPLELIARVKAQLRRYKK 122 Query: 122 SNNRAETGPIRVFS-------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + E + + + + + L E IL L N+G V+ +F Sbjct: 123 FSGVKEQNENVIVHSGLVINVNTHECYLNEKQLSLTPTEFSILRILCENKGNVVSSELLF 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDW 222 I+G + N + HI LR+K+ + + + +GY I+ Sbjct: 183 HEIWGDEYFSKSNNTITVHIRHLREKMNDTIDNPKYIKTVWGVGYKIEK 231 >gi|116628742|ref|YP_813914.1| DNA-binding response regulator [Lactobacillus gasseri ATCC 33323] gi|238852956|ref|ZP_04643355.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Lactobacillus gasseri 202-4] gi|282852390|ref|ZP_06261732.1| response regulator receiver domain protein [Lactobacillus gasseri 224-1] gi|300362620|ref|ZP_07058796.1| response regulator [Lactobacillus gasseri JV-V03] gi|116094324|gb|ABJ59476.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus gasseri ATCC 33323] gi|238834406|gb|EEQ26644.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Lactobacillus gasseri 202-4] gi|282556132|gb|EFB61752.1| response regulator receiver domain protein [Lactobacillus gasseri 224-1] gi|300353611|gb|EFJ69483.1| response regulator [Lactobacillus gasseri JV-V03] Length = 235 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 43/226 (19%), Positives = 90/226 (39%), Gaps = 12/226 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G ++ E D+ ++ L + L Sbjct: 5 ILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVDEYDPDLMILDLML--PKKDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-------- 113 E+ R +R +P+I ++ + + + G DD V KP +RE++ARV Sbjct: 63 EVAREVRQTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRDL 122 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + + + E GE L RE +L YL + G+ + + + Sbjct: 123 TQKATEDDEDKNITISNLVIMPEAYMVEKNGEKIELTHREFELLHYLAQHMGQVMTREHL 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGY 218 ++G +D + V+ + +LR+K+ + + ++R +GY Sbjct: 183 LQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSSPTILVTRRGVGY 227 >gi|309951515|gb|ADO95181.1| phosphate regulon transcriptional regulatory protein PhoB [Sinorhizobium sp. M14] Length = 230 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 50/224 (22%), Positives = 97/224 (43%), Gaps = 8/224 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + +G +E E + + + D+ ++ L G +E Sbjct: 6 MIVEDEEALSVLLRYNLEAEGYLVETIGHGEEADIVLQESVPDLLILDWML--PGVSGIE 63 Query: 63 LPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYR 117 L R +RA P+I ++ + +G DD + KP E++ARV A Sbjct: 64 LCRRLRARPNTERLPVIMLTARGEETERVRGLATGADDYLVKPFSTPELMARVRALLRRS 123 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + ++ I + + + L E R+L++LMA+ G+ ++ Q+ + Sbjct: 124 KPALISSILRYADIELDRESHRVHRERREVRLGPTEFRLLDFLMASPGRVFSRAQLLDGV 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +G D V+E V+ H+ +LRK L D + + R GYS+D Sbjct: 184 WG-HDLYVDERTVDVHVGRLRKALNFANKPDLIRTVRGAGYSMD 226 >gi|148273675|ref|YP_001223236.1| putative two-component system response regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147831605|emb|CAN02573.1| putative two-component system response regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 226 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 51/225 (22%), Positives = 91/225 (40%), Gaps = 8/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D A + + L +G ++ D+ ++ L G Sbjct: 4 IMLVEDEASLSEPLAFLLQREGYEVDVVEDGPAAVASFDKDGADLILLDLML--PGLPGT 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117 E+ R IR S VP+I ++ S + + G DD V KP R I A + Sbjct: 62 EVCREIRTRSAVPIIMLTAKDSEVDIVVGLELGADDYVTKPYSTRELLARIRAVLRRRVE 121 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 N E G +R+ + EV G +P +E +LE L+ N G+ + + Q+ + Sbjct: 122 VDDEPLNVLEVGSVRMDVERHTVEVDGREIAMPLKEFELLELLLRNAGRVLTRGQLIDRV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 +G D + ++ HI ++R K+ + + R LGY + Sbjct: 182 WG-SDYFGDTKTLDVHIKRIRSKIEREPSDPVLLVTVRGLGYRFE 225 >gi|86132460|ref|ZP_01051054.1| two-component system response regulator [Dokdonia donghaensis MED134] gi|85817021|gb|EAQ38205.1| two-component system response regulator [Dokdonia donghaensis MED134] Length = 227 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 41/223 (18%), Positives = 92/223 (41%), Gaps = 9/223 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 +L+DD + + ++G + ++ L + + ++ + G + Sbjct: 8 ILLVDDEPDILEIVGYNLSNEGYQVITGSNGLEAVKLAKKHQPHLIILDVMMPEMDGIEA 67 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117 E+ R + Q + + + + FD+G DD + KPI + +L++V ++ Sbjct: 68 CEIIRSNKDLEQTIITFFTARGEDYSQVAGFDAGADDYITKPIKPKVLLSKVKALLRRFK 127 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + + G + + + E LPR+E +L L + GK + I + Sbjct: 128 NEEAPSQITKVGKLIINREEYKVFKGKEELSLPRKEFELLSLLTSKPGKVFTREDILDKV 187 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +GL + V ++ HI KLR+K+ ++ + + +GY Sbjct: 188 WGL-EVVVGGRTIDVHIRKLREKIGDES----FKTVKGVGYKF 225 >gi|324327183|gb|ADY22443.1| two-component response regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 223 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 42/221 (19%), Positives = 93/221 (42%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L DD +++ +G + + + + ++ ++ Sbjct: 4 ILLADDDKHIRELLHYHLQKEGFKVFEAEDGKVAQDVLEKENIHLAIVDIM--MPFVDGY 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L IR + +P+I ++ L F SG DD + KP E++ R+ A+ RR ++ Sbjct: 62 TLCEEIRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQM 121 Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + T + G + + G+ LP +E +L L + G+ ++ ++ ++G+ Sbjct: 122 LSADIITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D +E V+ H+ +LR + + + + R LGY ++ Sbjct: 182 -DFEGDERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 221 >gi|310828961|ref|YP_003961318.1| hypothetical protein ELI_3395 [Eubacterium limosum KIST612] gi|308740695|gb|ADO38355.1| hypothetical protein ELI_3395 [Eubacterium limosum KIST612] Length = 228 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 40/220 (18%), Positives = 88/220 (40%), Gaps = 3/220 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 LI+D + + L +G + + + + D++ I+ L Sbjct: 4 IFLIEDDQAIAKNLMLLLQSEGFIVTHAATRKEATDTLVDNKFDLALIDISL--PDGNGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + ++ +P+I ++ + + + G DD + KP RE++AR+ R+ Sbjct: 62 TVCTEVKEVQNIPVIFLTASGDEASVVTGLNMGADDYITKPFRPRELIARIGTALRKSGR 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 S E ++V + + G L E R+L + N + + ++ ++ Sbjct: 122 SAATFEVCGLQVDTASGVVKKDGSEVFLSALEYRLLLMFVNNPKSIITRDRLLDELWDAA 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 E V +N + +I +LR+K+ + G + + R GY + Sbjct: 182 GEFVNDNTLTVYIKRLREKIEDDPGKPKIIRTVRGTGYRL 221 >gi|229158434|ref|ZP_04286496.1| Two-component response regulator [Bacillus cereus ATCC 4342] gi|228625041|gb|EEK81806.1| Two-component response regulator [Bacillus cereus ATCC 4342] Length = 229 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 52/229 (22%), Positives = 90/229 (39%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++++ F + + + + D+ ++ L Sbjct: 5 ILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIML--PELDGW 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR-------EILARVAA 114 + R IR S+VP+I ++ TL F+ G DD V KP +L Sbjct: 63 SVCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKV 122 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + L+ ++ I V R V L E IL YLM N+G + + Q+ Sbjct: 123 TKQLLENEDDTLSIHGIHVHFPSRTVTVNKTDINLTHTEFEILAYLMKNQGIVLTREQLI 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 S I+G ++ A ++ V SHI LR KL K + + GY + N Sbjct: 183 SRIWG-YEFAGDDRTVNSHIRNLRNKLGEK--AKYITTVVRTGYKFEGN 228 >gi|119963579|ref|YP_946689.1| two-component system response regulator [Arthrobacter aurescens TC1] gi|119950438|gb|ABM09349.1| two-component system response regulator [Arthrobacter aurescens TC1] Length = 220 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 49/221 (22%), Positives = 92/221 (41%), Gaps = 8/221 (3%) Query: 6 DDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPR 65 +D D L G +G +E ++ D+ ++ L G E+ R Sbjct: 2 EDEESFSDPLSYLLGKEGFDVEVVDNGSDALVEFDRNGADLVLLDLQL--PGTPGTEVCR 59 Query: 66 IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYRRLKV 121 +R S VP+I ++ S + + G DD V KP R + A + ++ Sbjct: 60 QLRQRSSVPVIMLTAKDSEIDKVVGLELGADDYVTKPYSSRELVARVRAVLRRQGEPEEL 119 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + GP+R+ + V G LP +E +LE L+ N G+ + + Q+ ++G Sbjct: 120 ITSTVQAGPVRMDIERHVVSVNGVQVSLPLKEFELLEMLLRNSGRVLTRGQLIDRVWG-S 178 Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 D + ++ H+ +LR K+ + + + R LGY + Sbjct: 179 DYVGDTKTLDVHVKRLRSKIEPDPSAPRYLVTVRGLGYKFE 219 >gi|17988267|ref|NP_540901.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella melitensis bv. 1 str. 16M] gi|237816486|ref|ZP_04595479.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella abortus str. 2308 A] gi|17984036|gb|AAL53165.1| phosphate regulon transcriptional regulatory protein phob [Brucella melitensis bv. 1 str. 16M] gi|237788553|gb|EEP62768.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella abortus str. 2308 A] Length = 255 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 42/224 (18%), Positives = 88/224 (39%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++D + +G ++ + E + D+ ++ L G + Sbjct: 34 IAVVEDEEALSVLLRYNLEAEGYQVDTMLRGDEAEIALRESVPDLLILDWML--PGVSGI 91 Query: 62 ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIY 116 EL R +R + P+I ++ + G DD V KP E+ + Sbjct: 92 ELCRRLRQRPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKAMLRR 151 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + ++ + G + + + + L E R+LEY M + G+ +++Q+ Sbjct: 152 ANPSILSHVLKVGDLLLDRQQHRVYRKEKEVHLGPTEFRLLEYFMMSPGRVFSRSQLLDG 211 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G D V++ V+ H+ +LRK + D + + R GYS Sbjct: 212 VWG-PDIYVDDRTVDVHVGRLRKAINVGRAADSIRTVRGAGYSF 254 >gi|229166773|ref|ZP_04294523.1| Two-component response regulator vanR [Bacillus cereus AH621] gi|228616770|gb|EEK73845.1| Two-component response regulator vanR [Bacillus cereus AH621] Length = 242 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 39/229 (17%), Positives = 83/229 (36%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + A +G + ++ E + ++ ++ ++ + Sbjct: 16 ILIVDDDRDIVRFVNANLMQEGFKVFSAHNGEEALEIINNNSIQLAILDIM--MPQMDGI 73 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARVA 113 EL R IR +P++ +S + F +G DD + KP E Sbjct: 74 ELCRRIREKHSLPIMFLSAKSLDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 133 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 ++V + + + R + GE L + E IL + A + +I Sbjct: 134 FNQNAVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYDILYLMAAAMNRVFTIEEI 193 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + +++ N V HI++LR K+ + + +GY I+ Sbjct: 194 YESVWKERAYE-SNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIE 241 >gi|296332737|ref|ZP_06875197.1| two-component response regulator (YclK) [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305673082|ref|YP_003864754.1| two-component response regulator [Bacillus subtilis subsp. spizizenii str. W23] gi|296150017|gb|EFG90906.1| two-component response regulator (YclK) [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305411326|gb|ADM36445.1| two-component response regulator (YclK) [Bacillus subtilis subsp. spizizenii str. W23] Length = 227 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 48/229 (20%), Positives = 90/229 (39%), Gaps = 11/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D V F +G E + + D+ ++ L + Sbjct: 3 ILMIEDNVSVCTMTEMFFFKEGFEAEFVHDGLEGYQRFTEENWDLIILDIML--PSMDGV 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 + R IR S VP+I ++ + + F+ G DD V KP ++AR+ A+ RR + Sbjct: 61 TICRKIRETSTVPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARIKAVIRRYQA 120 Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + V L +E +L YL+ N + ++ Q+ Sbjct: 121 TGKAVIDEDMIESECFTINKKTREVFLNGEPVENLTPKEFDLLYYLVQNPRQVFSREQLL 180 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 ++G + +E V+ HI +LRKKL ++ + + +GY D + Sbjct: 181 EQVWG-YQFYGDERTVDVHIKRLRKKLASEDKP-FLYTVWGVGYKFDED 227 >gi|254520763|ref|ZP_05132819.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA] gi|226914512|gb|EEH99713.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA] Length = 221 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 47/223 (21%), Positives = 92/223 (41%), Gaps = 9/223 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D +++G + G S+ L + + D+ ++ L Sbjct: 5 ILIVEDEKEIREGVSEYLAEVGYSVISAEDGMQAIELFKNNKIDLVILDIML--PKANGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119 + IR S VP+I ++ T + FD DD + KP + R+ A Sbjct: 63 VVLNKIRQESNVPVIMLTAMSDDYTQIMSFDEEADDYITKPFSIIVLHKRIEALLRRGVK 122 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 N + G I + +G GE L +E +++E L+ GK + + QI ++ Sbjct: 123 VSENKKWCYGDIEIDFEGYSARKNGENIDLKPKEIKLIELLLKYEGKVLTRAQILDNLW- 181 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +EA + V++ +I +RKKL D + + + +GY + Sbjct: 182 RIEEAPNDRVIDVYIKNIRKKL----LLDCIVTVKGIGYKFEE 220 >gi|163789835|ref|ZP_02184271.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Carnobacterium sp. AT7] gi|159874775|gb|EDP68843.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Carnobacterium sp. AT7] Length = 242 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 48/237 (20%), Positives = 95/237 (40%), Gaps = 21/237 (8%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61 +++DD + +G ++ + + D ++ L G + Sbjct: 5 LIVDDEQSILTLLAFNLEKEGYHVDTALDGLEGYEMALAHAYDFIILDLMLPSMGGMDIC 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R P++ ++ + + G DD + KP RE+LAR+ AI RR+ Sbjct: 65 KKLRQ--EKIDAPIMMLTAKDDELEKIIGLELGADDYMTKPFSPREVLARMKAIMRRMSS 122 Query: 122 SNNRA----------------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRG 165 +N + G IR+ + V+ E + +E +L Y++ Sbjct: 123 KSNAEEALKTKDTIKEEAELVQVGDIRIDPSQYEVIVRDEKVDVTPKEFELLMYMIKRIN 182 Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 + +++ Q+ AI+ FD A E +V+ HIS LR+K+ + + + R GY + Sbjct: 183 RILSREQLLDAIW-NFDYAGETRIVDVHISHLREKIEVDTKNPTYIRTVRGFGYKFE 238 >gi|86159336|ref|YP_466121.1| two component transcriptional regulator [Anaeromyxobacter dehalogenans 2CP-C] gi|85775847|gb|ABC82684.1| two component transcriptional regulator, winged helix family [Anaeromyxobacter dehalogenans 2CP-C] Length = 245 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 53/223 (23%), Positives = 91/223 (40%), Gaps = 8/223 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L++D + GV++ + R DV ++ L G+ LE Sbjct: 21 LLVEDDLRLAAFTREYLEGHGVAVVHVTDGRRGLDEALAGRFDVVLLDLML--PGKDGLE 78 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +R+ S VP+I ++ + + G DD + KP RE+LAR+ A+ RR Sbjct: 79 VCRELRSRSDVPVIVLTARGEEADRVMGLELGADDYLAKPFSPRELLARIRAVVRRATGR 138 Query: 123 NNRAETGPI----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 V R + G L E +L L G+ +A+ Q+ Sbjct: 139 AGPPREAVRVGGLVVDPAARRVTLDGREVTLTGYEFALLHALARRAGRVLAREQLIELAG 198 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 G +EA + V+ H+S+LR+KL + + + R GY + Sbjct: 199 GSAEEAFD-RSVDVHVSRLRQKLGDDPRRPRLIKTVRGAGYLL 240 >gi|28872582|ref|NP_795201.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. tomato str. DC3000] gi|213968546|ref|ZP_03396689.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. tomato T1] gi|301383518|ref|ZP_07231936.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. tomato Max13] gi|302062568|ref|ZP_07254109.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. tomato K40] gi|302130235|ref|ZP_07256225.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28855837|gb|AAO58896.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. tomato str. DC3000] gi|213926834|gb|EEB60386.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. tomato T1] gi|330878107|gb|EGH12256.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330967971|gb|EGH68231.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. actinidiae str. M302091] gi|331017829|gb|EGH97885.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 229 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 45/224 (20%), Positives = 93/224 (41%), Gaps = 9/224 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A +++ G + + + + D+ ++ L G + Sbjct: 6 ILIVDDEAPIREMIAVALEMAGYDCIEAENSQQAHAIIVDRKPDLILLDWML--PGTSGI 63 Query: 62 ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IY 116 EL R ++ +P+I ++ + + G DD + KP RE++AR+ A Sbjct: 64 ELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + E G + + + G+ + E R+L++ M ++ + + Q+ Sbjct: 124 AGPTDGESPIEVGGLLLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAYTRGQLLDQ 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + VEE V+ HI +LRK L + + V + R GY Sbjct: 184 VWG-GNVYVEERTVDVHIRRLRKALGDAYE-NLVQTVRGTGYRF 225 >gi|332292108|ref|YP_004430717.1| two component transcriptional regulator, winged helix family [Krokinobacter diaphorus 4H-3-7-5] gi|332170194|gb|AEE19449.1| two component transcriptional regulator, winged helix family [Krokinobacter diaphorus 4H-3-7-5] Length = 227 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 42/223 (18%), Positives = 91/223 (40%), Gaps = 9/223 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 +L+DD + + ++G + ++ L + ++ + G + Sbjct: 8 ILLVDDEPDILEIVGYNLSNEGYQVITGSNGVEAVKLAKKHSPHLIILDVMMPEMDGIEA 67 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117 E+ R Q + + + + FD+G DD + KPI + ++++V ++ Sbjct: 68 CEVIRANSDLDQTIITFFTARGEDYSQVAGFDAGADDYITKPIKPKVLVSKVKALLRRFK 127 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 VS+ + G + + + E LPR+E +L L + GK + I + Sbjct: 128 EEGVSSQITKVGKLVINREEYKVYKGKEELSLPRKEFELLSLLTSKPGKVFTREDILDKV 187 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +GL + V ++ HI KLR+K+ ++ + + +GY Sbjct: 188 WGL-EVVVGGRTIDVHIRKLREKIGDES----FKTVKGVGYKF 225 >gi|317122193|ref|YP_004102196.1| transcriptional regulator [Thermaerobacter marianensis DSM 12885] gi|315592173|gb|ADU51469.1| two component transcriptional regulator, winged helix family [Thermaerobacter marianensis DSM 12885] Length = 232 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 48/225 (21%), Positives = 88/225 (39%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ DG S+ S+ + ++ L L Sbjct: 6 ILVVDDEPGIREICRLYLERDGFSVREAASVAGARAALQRESPALVVLDLML--PDGNGL 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 +L R + VP+I ++ + + G DD V KP RE++ARV A+ RR + Sbjct: 64 DLCRELVDQG-VPVICLTARAEETDRVLGLELGADDYVTKPFSPRELVARVRAVLRRARG 122 Query: 122 SNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 A G V R V PL +E +L L+ + + + Q+ + Sbjct: 123 PRAAAPVVVRFGRCAVDLAARRLLVDDREVPLTPKEFDLLALLVTHPHRVFTRQQLLEQV 182 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221 + F A + V+ H+ +LR+K+ + + +GY D Sbjct: 183 WD-FAYAGDTRTVDVHVQRLRRKIEPDPQRPRYLKTVWSVGYRFD 226 >gi|256380300|ref|YP_003103960.1| two component transcriptional regulator, winged helix family [Actinosynnema mirum DSM 43827] gi|255924603|gb|ACU40114.1| two component transcriptional regulator, winged helix family [Actinosynnema mirum DSM 43827] Length = 261 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 41/219 (18%), Positives = 87/219 (39%), Gaps = 5/219 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + + +G + D+ ++ L G ++ Sbjct: 42 LVVDDDPALAEMLTIVLRGEGFDTAVVADGARALPALRELKPDLVLLDLML--PGMNGID 99 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + IR+ S VP++ ++ + +SG DD V KP +E++AR+ A RR + Sbjct: 100 VCKAIRSESGVPIVMLTAKSDTVDVVLGLESGADDYVVKPFKPKELVARIRARMRRTEAE 159 Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + G + +G L E +L L + + + ++G + Sbjct: 160 PAEVLQIGDLTIDVPGHEVLREGRPIQLTPLEFDLLVALARKPRQVFTREVLLEQVWG-Y 218 Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219 A + +V H+ +LR K+ + + V + R +GY Sbjct: 219 RHAADTRLVNVHVQRLRSKVERDPEHPEVVLTVRGVGYK 257 >gi|229065498|ref|ZP_04200746.1| Two-component response regulator [Bacillus cereus AH603] gi|228715816|gb|EEL67588.1| Two-component response regulator [Bacillus cereus AH603] Length = 228 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 50/227 (22%), Positives = 93/227 (40%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ ++G+ + L R D+ ++ + Sbjct: 5 ILIVDDDKEIRNLISVYLENEGLKTQKAEDAIEALELLEEKRFDLIILDVM--MPNMDGI 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E IR +P+I +S + SG DD ++KP + E++ARV + RR K Sbjct: 63 EACMKIREERNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 122 Query: 122 SNNRAETGPI-------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N + V +D R ++G L +E ILE L N+G ++ +I+ Sbjct: 123 YNTNTDNDKSVLEIGDLTVNTDTRQVWIRGTEVRLTPKEFDILELLARNKGIVLSVAKIY 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220 A++ +N V HI+K+R K+ + + +GY I Sbjct: 183 EAVW-KDAFYKSDNTVMVHITKIRDKIEADSKHPIYIKTVWGIGYKI 228 >gi|148381290|ref|YP_001255831.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 3502] gi|148290774|emb|CAL84908.1| two-component response regulator [Clostridium botulinum A str. ATCC 3502] Length = 230 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 39/227 (17%), Positives = 86/227 (37%), Gaps = 9/227 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + +G + + E S + ++ ++ Sbjct: 5 ILIVDDDKTIVEFLQIFLIKEGYDVRISYNGEEALDKIRSEQFNLILMDIM--MPKLDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-----ARVAAIY 116 E + IR + +P+I ++ S Q + F SG DD + KP E+ Sbjct: 63 EAIKRIRRLTNIPIIFLTAKDSQQDKIKGFISGCDDYITKPFDLVELSLRVSAILKRVST 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + + + + + + L +E IL L N+G+ ++I+ Sbjct: 123 SVAEENKDIIKVKDLELNLKEHTLYKEKNEIKLTPKEFDILFLLARNKGRIFPSSEIYER 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222 ++G + +N + +HI LR+KL + + + +GY I+ Sbjct: 183 VWGQ-EFLENDNSLLTHIRNLREKLSDTVKNSKYIKTVWGVGYKIEK 228 >gi|163940273|ref|YP_001645157.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163862470|gb|ABY43529.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] Length = 228 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 49/227 (21%), Positives = 93/227 (40%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ ++G+ + L + D+ ++ + Sbjct: 5 ILIVDDDKEIRNLISVYLENEGLKTQKAEDAIEALKLLEEKKFDLIILDIM--MPNMDGI 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E IR +P+I +S + SG DD ++KP + E++ARV + RR K Sbjct: 63 EACMKIREERNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 122 Query: 122 SNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N + V +D R V+G L +E IL+ L N+G ++ +I+ Sbjct: 123 YNTHTDNNKSILEIGDLTVNTDTRQVWVRGTEVRLTPKEFDILKLLARNKGIVLSVAKIY 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220 A++ +N V HI+K+R K+ + + +GY I Sbjct: 183 EAVW-KDAFYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGYKI 228 >gi|331092423|ref|ZP_08341248.1| hypothetical protein HMPREF9477_01891 [Lachnospiraceae bacterium 2_1_46FAA] gi|330401266|gb|EGG80855.1| hypothetical protein HMPREF9477_01891 [Lachnospiraceae bacterium 2_1_46FAA] Length = 226 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 45/223 (20%), Positives = 96/223 (43%), Gaps = 6/223 (2%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEK 59 M ++D + +++ + G+ GF + ++ ++ L G G + Sbjct: 1 MIYCVEDDSNIRELVVYTLESTGMKARGFEDGRKFTEALAFETPELVLLDIMLPGEDGIE 60 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYR 117 +L+ R +P+I ++ S + D+G DD + KP E+ + Sbjct: 61 ILKKLRNNAKTKNIPVIMVTAKGSEYDKVVGLDTGADDYITKPFGMMELVSRIKAVLRRT 120 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + + G + + + +V G+ L +E +LE LM NR + + ++ I Sbjct: 121 TREKEETKYQIGNLVIDVEKHKVKVDGKSVTLTLKEFELLEKLMKNRHIVLTRDRLLEEI 180 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G +D + E V+ H+ LR+KL + + +++ R +GY I Sbjct: 181 WG-YDFSGETRTVDVHVRTLRQKLGDAG--ELIETVRGVGYRI 220 >gi|297153813|gb|ADI03525.1| response regulator receiver [Streptomyces bingchenggensis BCW-1] Length = 234 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 45/227 (19%), Positives = 93/227 (40%), Gaps = 12/227 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D +++ A G ++ + R D+ ++ L Sbjct: 7 LLVVEDEPTLRELLSASLRLAGFAVAPVATGAQALAAVREQRPDLIVLDVML--PDFDGF 64 Query: 62 ELPRIIR------AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI 115 E+ R +R A P++ ++ + + + +G DD V KP + E++ R+ AI Sbjct: 65 EVVRRLRGQHPSAAAGHPPVLFLTARDAPEDRISGLRAGGDDYVTKPFNLEELVLRIRAI 124 Query: 116 YRRLKVSNNRAETGPIR--VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 RR + D G L E +L LM N G+ ++K+Q+ Sbjct: 125 LRRTSGRQADGRLVVGMLELDPDSHQVTRDGRPVQLSPTEFSLLRVLMENAGQVLSKSQL 184 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +D ++++V S+IS LR+K+ + + + R GY + Sbjct: 185 LELVW-QYDFGGDDSIVASYISYLRRKV-DLDEPKLIHTVRGTGYVL 229 >gi|291302594|ref|YP_003513872.1| winged helix family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290571814|gb|ADD44779.1| two component transcriptional regulator, winged helix family [Stackebrandtia nassauensis DSM 44728] Length = 236 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 44/223 (19%), Positives = 92/223 (41%), Gaps = 8/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G G ++ E + R D+ ++ L Sbjct: 14 LLVVEDDPNICELLATSLGYAGFTVHRAEGGEEAVRAVARHRPDLVVLDVML--PDFDGF 71 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPI---HHREILARVAAIYR 117 E+ R IR+ S P++ ++ +L+ + G DD V KP + V + Sbjct: 72 EVARRIRSGSDRTPIVYLTARDALEDKVRGLTLGGDDYVTKPFSLEEVIARIRAVLRRSK 131 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 R + + + + + G L E ++L Y M N G+ ++K QI + Sbjct: 132 GDAPPPPRLQYADLELDEETHEVWRGGNSVQLSPTEFKLLRYFMVNAGRVLSKAQILDHV 191 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + +D ++ +VES++S LR+K+ + + + R +GY + Sbjct: 192 W-RYDFRGDDGIVESYVSYLRRKI-DNTEPRLIQTLRGIGYVL 232 >gi|229155489|ref|ZP_04283597.1| Two-component response regulator vanR [Bacillus cereus ATCC 4342] gi|228627807|gb|EEK84526.1| Two-component response regulator vanR [Bacillus cereus ATCC 4342] Length = 242 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 39/229 (17%), Positives = 83/229 (36%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +G + ++ E + + ++ ++ + Sbjct: 16 ILIVDDDQDIVRFMNVNLIQEGFKVFSAHNGEEALEIINKNCIQLAILDIM--MPQMDGI 73 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARVA 113 EL R IR +P+I +S S + F +G DD + KP E Sbjct: 74 ELCRRIREKHSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 133 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 ++V + + + R + E L + E IL + A + + +I Sbjct: 134 FNQHAVQVIEKKINIRGLEIDEASRTVMLYRETINLTKTEYDILFLMAAAKNRVFTIEEI 193 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221 + +++ N V HI++LR K+ + + + +GY I+ Sbjct: 194 YESVWKERAYE-SNNTVMVHIARLRNKIEEDPKEPKFIQNVWGVGYKIE 241 >gi|154483086|ref|ZP_02025534.1| hypothetical protein EUBVEN_00784 [Eubacterium ventriosum ATCC 27560] gi|149736171|gb|EDM52057.1| hypothetical protein EUBVEN_00784 [Eubacterium ventriosum ATCC 27560] Length = 230 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 32/222 (14%), Positives = 86/222 (38%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + DG + + D+ ++ L Sbjct: 4 ILIVEDDSFLNKMVAYNLTADGYGVTSALNARTAAEAIRQREFDLVLLDINL--PDGNGF 61 Query: 62 ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH---REILARVAAIYR 117 EL ++I H +I ++ + ++ G D + KP + + + A+ Sbjct: 62 ELCKLIKPQHPDTIVIFLTANDQESDQIRGYEVGAVDYITKPFVIGALQRKIKAMFAMLE 121 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 K + + + G + + + + G+ L E ++L N + + + Q+ + Sbjct: 122 HHKPAKDIYDDGRLFLDFSEQTASLNGKPLTLSPMEYKMLNLFRKNPRQVLTRGQLLEKL 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 + + ++ V+E+ + + IS++R K+ + G + + +GY Sbjct: 182 WDIDEKFVDEHTLTTSISRIRSKIESDGGAPYIKTVYGMGYQ 223 >gi|326317102|ref|YP_004234774.1| winged helix family two component transcriptional regulator [Acidovorax avenae subsp. avenae ATCC 19860] gi|323373938|gb|ADX46207.1| two component transcriptional regulator, winged helix family [Acidovorax avenae subsp. avenae ATCC 19860] Length = 230 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 44/224 (19%), Positives = 92/224 (41%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D V D +G ++ + L + + ++ L G L Sbjct: 6 ILVVEDDPRVADFLQRGLRAEGYGVQMARTGPEGLELARAGEATLLILDVML--PGMTGL 63 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYR 117 +L + +R QVP++ ++ S++ + G DD + KP E + + R Sbjct: 64 DLCQSLRAEGGQVPVLMLTALSSIEDKVAGLKLGADDYLTKPFAFEELLARIEALLRRGR 123 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + R + + + + G L +E LE LM+ G+ ++ +I S + Sbjct: 124 EQRPRATRLQVADLVLDLERMQASRAGRPIALTAKELAFLELLMSAPGRLCSRERILSNV 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +G+ + NVV+ ++ +LR K+ + + R LGY +D Sbjct: 184 WGMHE-DPLTNVVDVYVRRLRSKIDEGHPLALLKTVRGLGYRLD 226 >gi|229093928|ref|ZP_04225019.1| Two-component response regulator [Bacillus cereus Rock3-42] gi|228689410|gb|EEL43224.1| Two-component response regulator [Bacillus cereus Rock3-42] Length = 229 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 51/229 (22%), Positives = 89/229 (38%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++++ F + + + + D+ ++ L Sbjct: 5 ILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIML--PELDGW 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR-------EILARVAA 114 + R IR S+VP+I ++ TL F+ G DD V KP +L Sbjct: 63 SVCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKV 122 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + L+ ++ I V R V L E IL Y M N+G + + Q+ Sbjct: 123 TKQLLENEDDTLSIHGIHVHFPSRTVTVNKTDINLTHTEFEILAYFMKNQGIVLTREQLI 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 S I+G ++ A ++ V SHI LR KL K + + GY + N Sbjct: 183 SRIWG-YEFAGDDRTVNSHIRNLRNKLGEK--AKYITTVVRTGYKFEGN 228 >gi|113478264|ref|YP_724325.1| two component transcriptional regulator [Trichodesmium erythraeum IMS101] gi|110169312|gb|ABG53852.1| two component transcriptional regulator, winged helix family [Trichodesmium erythraeum IMS101] Length = 257 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 44/228 (19%), Positives = 88/228 (38%), Gaps = 9/228 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++IDD + + G + + L D+ ++ L G V Sbjct: 4 ILVIDDDPAIAELVAVNLEMAGYEVSQAEDGIKGQALALQLLPDLIVLDLMLPKVDGFTV 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R + +P++ ++ Q ++ F++G DD + KP E+LARV A+ RR Sbjct: 64 CQRLRRDERTADIPVLMLTALGQTQDKVEGFNAGADDYLTKPFEIEEMLARVRALLRRTD 123 Query: 121 VSNNRAETGPIRVF------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 A+ I + + + + L E +L L+ G+ V+ ++I Sbjct: 124 RIPQAAKHSEILSYGPLTLVPERFEAIWFDQTVKLTHLEFELLHCLLQRHGQTVSPSEIL 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 ++G +D + + HI LR K+ + + GY ++ Sbjct: 184 KEVWG-YDPDDDIETIRVHIRHLRTKMEPDPRHPRYIKTVYGAGYCLE 230 >gi|319950313|ref|ZP_08024232.1| putative OmpR family two-component response regulator [Dietzia cinnamea P4] gi|319436005|gb|EFV91206.1| putative OmpR family two-component response regulator [Dietzia cinnamea P4] Length = 235 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 50/220 (22%), Positives = 89/220 (40%), Gaps = 5/220 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD +++ G S+E E + DV ++ E Sbjct: 4 LVVDDEPALRESLRRGLAAGGWSVETAPDGEAGLEMACGDDFDVVVLDIM--MPRRSGYE 61 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R +R P++ ++ D FD G DD + KP + AR+ A+ RR Sbjct: 62 VVREMRQRGIWTPVLMLTAKDGEYDEADAFDLGADDYLVKPFSFVVLEARLRALVRRGAP 121 Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 V R+ + RE +LEYL+ NR + V+K QI A++ Sbjct: 122 ERPATFEAGDLVVDPAAREVRRGDTRISVTAREYAVLEYLIRNRNQVVSKAQIMRAVWDS 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++N+VE ++ LR+K+ G +++ R GY + Sbjct: 182 A-YDGDDNIVEVYVGYLRRKIDAPFGAHAIETVRGQGYRL 220 >gi|229059564|ref|ZP_04196945.1| Two-component response regulator vanR [Bacillus cereus AH603] gi|228719768|gb|EEL71363.1| Two-component response regulator vanR [Bacillus cereus AH603] Length = 244 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 40/229 (17%), Positives = 83/229 (36%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + A +G + ++ E + ++ ++ ++ + Sbjct: 18 ILIVDDDRDIVRFVNANLMQEGFKVFSAHNGEEALEIINNNGIQLAILDIM--MPQMDGI 75 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARVA 113 EL R IR +P++ +S S + F +G DD + KP E Sbjct: 76 ELCRRIREKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 135 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 ++V + + R + GE L + E IL + A + +I Sbjct: 136 FNQNAVQVIKKEINIRGLEIDEMSRTVMLYGETINLTKTEYDILYLMAAAMNRVFTIEEI 195 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + +++ N V HI++LR K+ + + +GY I+ Sbjct: 196 YESVWKERAYE-SNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIE 243 >gi|116623411|ref|YP_825567.1| two component transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116226573|gb|ABJ85282.1| two component transcriptional regulator, winged helix family [Candidatus Solibacter usitatus Ellin6076] Length = 225 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 45/224 (20%), Positives = 93/224 (41%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + G +G +E D+ ++ L G+ L Sbjct: 4 ILVVEDEPGIALGLEDDLTIEGYDVEVARDGVTAARRGREGNFDLILLDVML--PGKDGL 61 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118 E+ R +R + P++ ++ + + G DD V KP +E+ AR+ A Sbjct: 62 EVCRELRRAGLKTPILMLTAKARETEKVMGLEIGADDYVTKPFGTKELRARIKALLRRAS 121 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 G + V + ++G+ L E ++L+ + RG+ +++ Q+ +A + Sbjct: 122 GDTDLETCSFGDVEVDFARGELRLKGKAVELTPIEFKLLDVFIRARGRVLSRDQLIAATW 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 G D +V++HI+ LR+K+ + + + R LGY D Sbjct: 182 GR-DTFTSARIVDNHIANLRRKIGDDPAEPRYLRNVRGLGYRFD 224 >gi|222528319|ref|YP_002572201.1| winged helix family two component transcriptional regulator [Caldicellulosiruptor bescii DSM 6725] gi|222455166|gb|ACM59428.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor bescii DSM 6725] Length = 225 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 49/221 (22%), Positives = 103/221 (46%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D+ + + + G S++ + +A D+ ++ L + Sbjct: 3 ILVIEDQKSLANTIARRLQEVGYSVDMALDGQEGLNFIQTASYDLIILDIML--PKIDGI 60 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L +++R Q P++ ++ S++ + D+G DD + KP E+LARV A+ RR Sbjct: 61 TLLKLVRNKGVQTPVLCLTAKDSIEDRVTGLDAGADDYLVKPFSFDELLARVRALLRRYS 120 Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + ++ R G+V L +E +LEYL N+G+ + ++QI ++ Sbjct: 121 QIKDPIIQIKDLVIDTNSRKVTRAGKVIDLTSKEYSVLEYLARNKGRVLTRSQIAEHVW- 179 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D N+V+ +I LR+K+ + + + R +GY + Sbjct: 180 NYDFEGTSNIVDVYIRYLRRKIDDGFPEKLIHTIRGVGYML 220 >gi|196041195|ref|ZP_03108490.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|196027903|gb|EDX66515.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] Length = 232 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 40/229 (17%), Positives = 83/229 (36%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +G + + E + ++ ++ ++ + Sbjct: 6 ILIVDDDQDIVRFMNVNLMQEGFKVFSAYNGEEALEIINNNSIQIAILDIM--MPQMDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARVA 113 EL R IR +P+I +S S + F +G DD + KP E Sbjct: 64 ELCRRIREKHSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 123 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 ++V + + + R + GE L + E IL + A + + +I Sbjct: 124 FNQNAVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYDILFLMAAAKNRVFTIEEI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 + +++ N V HI++LR K+ + + +GY I+ Sbjct: 184 YESVWKERAYE-SNNTVMVHIARLRNKIEEDSKEPKFIQNVWGVGYKIE 231 >gi|194364602|ref|YP_002027212.1| winged helix family two component transcriptional regulator [Stenotrophomonas maltophilia R551-3] gi|194347406|gb|ACF50529.1| two component transcriptional regulator, winged helix family [Stenotrophomonas maltophilia R551-3] Length = 229 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 84/224 (37%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ + + D+ ++ L G L Sbjct: 5 ILIVDDEPAIREMVAFALRKGDYEPVHAGDAREAQTAIADRVPDLILLDWML--PGTSGL 62 Query: 62 ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIY 116 +L R R +VP+I ++ + ++GVDD V KP RE+ R Sbjct: 63 DLARRWRKETLTREVPIIMLTARGEENDRVGGLEAGVDDYVVKPFSARELLARIRAVMRR 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 R + GPIR+ + P+ E R+L + M + + + Q+ Sbjct: 123 AREDDEDGSVAVGPIRIDGAAHRVFANDQPVPIGPTEYRLLHFFMTHPERVYTRAQLLDH 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G VEE ++ HI +LRK L + V + R GY Sbjct: 183 VWGGSVY-VEERTIDVHIRRLRKTLEPFNAENMVQTVRGAGYRF 225 >gi|257869521|ref|ZP_05649174.1| transcriptional regulator [Enterococcus gallinarum EG2] gi|9294730|gb|AAF86641.1|AF162694_5 response regulator VanRc [Enterococcus gallinarum] gi|67479938|gb|AAY67971.1| reponse regulator [Enterococcus gallinarum] gi|257803685|gb|EEV32507.1| transcriptional regulator [Enterococcus gallinarum EG2] Length = 231 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 48/230 (20%), Positives = 92/230 (40%), Gaps = 12/230 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 V++DD + D ++G S++ F D++ ++ L Sbjct: 5 IVVVDDEKEIADLVTTFLQNEGFSVQPFYDGTSAIAYIEKEAIDLAVLDVML--PDIDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 +L + IR P++ ++ + G DD V KP + E++ARV RR + Sbjct: 63 QLLQQIRKTHFFPVLMLTAKGEDLDKITGLSLGADDYVTKPFNPLEVVARVKTQLRRYQR 122 Query: 122 SNNRAETGPIRVF--------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 N+ + + + + + G+ L E +IL YL ++G V+ + Sbjct: 123 YNHSTASPTVEEYEKDGLILKINSHQCILYGKEVFLTPIEFKILLYLFEHQGSVVSSETL 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDW 222 F A++ N V +HI++LR+KL + + +GY I+ Sbjct: 183 FEAVWKEKYLD-NNNTVMAHIARLREKLHEEPRKPKLIKTVWGVGYIIEK 231 >gi|330505652|ref|YP_004382521.1| two component transcriptional regulator [Pseudomonas mendocina NK-01] gi|328919938|gb|AEB60769.1| two component transcriptional regulator [Pseudomonas mendocina NK-01] Length = 229 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 46/224 (20%), Positives = 92/224 (41%), Gaps = 9/224 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A +++ G + + + + D+ ++ L G + Sbjct: 6 ILIVDDEAPIREMIAVALEMAGYECLEAENTQQAHAVIVDRKPDLILLDWML--PGTSGI 63 Query: 62 ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IY 116 EL R ++ S +P+I ++ + + G DD + KP RE++AR+ A Sbjct: 64 ELARRLKRDELTSDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 E G + + + G+ + E R+L++ M ++ + + Q+ Sbjct: 124 AGPSDGEAPIEVGGLLLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAYTRGQLLDQ 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + VEE V+ HI +LRK L + V + R GY Sbjct: 184 VWG-GNVYVEERTVDVHIRRLRKALGEAYE-NLVQTVRGTGYRF 225 >gi|299821621|ref|ZP_07053509.1| response regulator [Listeria grayi DSM 20601] gi|299817286|gb|EFI84522.1| response regulator [Listeria grayi DSM 20601] Length = 239 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 35/230 (15%), Positives = 89/230 (38%), Gaps = 15/230 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD ++ + ++ ++ + + DV ++ G+ +E Sbjct: 8 LIVDDEDRIRRLLKMYLERESYLIDEADNGDDALDMALKYDYDVILLDVM--MPGKDGIE 65 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA--------- 113 + + IR P++ ++ + F+ G DD + KP RE++ RV Sbjct: 66 VCKEIRMAKATPIVMLTAKGEESNRVQGFEVGADDYIVKPFSPREVVLRVKAVLRRASGG 125 Query: 114 -AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 L + + + ++ + GE L +E +L ++ + ++ Sbjct: 126 EQGKDTLLSIGDTITFPNLTIDNESHLVTINGEKVNLTPKEYDLLYFMARTPERVHSREA 185 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF--DPVDSKRFLGYSI 220 + I+ +D + +++H+ +LR+KL + + + LGY + Sbjct: 186 LLKEIW-RYDFVGDLRTIDTHVKRLREKLYDISEEAGKMIVTVWGLGYKL 234 >gi|222147387|ref|YP_002548344.1| phosphate regulon transcriptional regulatory protein PhoB [Agrobacterium vitis S4] gi|221734377|gb|ACM35340.1| phosphate regulon transcriptional regulatory protein PhoB [Agrobacterium vitis S4] Length = 227 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 53/225 (23%), Positives = 95/225 (42%), Gaps = 8/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++D + +G +E + E D+ ++ L G + Sbjct: 5 IAVVEDEEALSVLLRYNLESEGYEVETILRGDEAELRLQERVPDLLILDWML--PGVSGI 62 Query: 62 ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 EL R +R P+I ++ + +G DD V KP E++ARV A+ RR Sbjct: 63 ELCRRLRMRPDTERLPIIMLTARGEESERVRGLATGADDYVVKPFSTPELMARVKAMLRR 122 Query: 119 LKVSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 K + G I + + + L E R+LE+LM + G+ +++Q+ Sbjct: 123 AKPEVLSSLLRCGDIELDRETHRVHRKSREVRLGPTEFRLLEFLMTSPGRVFSRSQLLDG 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G D V+E V+ H+ +LRK L D + + R GYS++ Sbjct: 183 VWG-HDIYVDERTVDVHVGRLRKALNFSNMQDVIRTVRGAGYSME 226 >gi|329667413|gb|AEB93361.1| two-component system response regulator [Lactobacillus johnsonii DPC 6026] Length = 231 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 46/224 (20%), Positives = 89/224 (39%), Gaps = 10/224 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D + +G + + + + ++ L + Sbjct: 6 ILLIEDEESLASFIQPELELEGYEVVWAKDGKEGLEFFEKEKPTLILLDWML--PVYDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R IR S +P+I ++ + D G+DD + KP E+ AR+ I RRL+ Sbjct: 64 TVLRRIRKVSDIPIIMLTARNQASDISNALDQGLDDYMTKPFEIEELFARIRVILRRLER 123 Query: 122 SNNRA-----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 R E +++ +GE L +E +L LM + K ++ ++ Sbjct: 124 EKRRVVSSTLEFSVLKIDLASHKFWCKGEEIYLTPKEYALLCELMNDPEKVKSRDELLDI 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G +D + N V+ +I LR KL + + + R GY + Sbjct: 184 VWG-YDFIGQTNTVDVYIRALRNKLGKY--RNLIKTVRGYGYCL 224 >gi|260578371|ref|ZP_05846285.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC 43734] gi|258603393|gb|EEW16656.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC 43734] Length = 235 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 47/223 (21%), Positives = 95/223 (42%), Gaps = 9/223 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD A + D G +E ++ + L ++ + D ++ G Sbjct: 12 LVVDDEANISDLLKVSLKFQGFDVETADNGQDALALAATYKPDAFILDVM--MPGMDGFT 69 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L +RA P + ++ ++ + G DD V KP E++ R+ I RR+ Sbjct: 70 LLNKLRAAGHDAPALFLTAKDGVEDRIHGLTIGADDYVTKPFSLEEVITRLRVILRRVSS 129 Query: 122 SNNRAETGPIRVFSDGRDPEVQGE----VFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + + D + + L E ++L YL+ N ++K +I + Sbjct: 130 EDEQESSLITYEDITLDDDMHEVTKAGEIVELSPTEFKLLRYLLVNAEVVLSKAKILDHV 189 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + +D + NVVES++S LR+K+ +K + + R +GY + Sbjct: 190 W-NYDFGGDGNVVESYVSYLRRKI-DKEEPHLIQTVRGVGYVL 230 >gi|253681316|ref|ZP_04862114.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridium botulinum D str. 1873] gi|253562554|gb|EES92005.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridium botulinum D str. 1873] Length = 235 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 46/233 (19%), Positives = 89/233 (38%), Gaps = 14/233 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD + + D + G + + + D++ I+ Sbjct: 4 ILIADDEEEIIELLSLYLEKDNNIIYGAKNGLDAFNIIENNNVDLAIIDIM--MPKIDGY 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILAR 111 L + IR ++P+I +S + + G DD + KP + + Sbjct: 62 HLVKKIREKYKIPVIMLSAKSEYSHKILGLELGADDYITKPFNAMEVVARVKAQLRRYYK 121 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + + + E G +++ + G PL E +I+ YLM + G+ K Sbjct: 122 YHSTGDTVNDNEKCLEYGNLKLNNSTCTLYKNGVEIPLTSTEYKIIFYLMNSCGRVFTKK 181 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223 QIF ++ ++NV+ HIS LR K+ N + + + R LGY ++N Sbjct: 182 QIFEYVWDEP-FYGDDNVIMVHISNLRDKIENDSKNPEYIKTIRGLGYKFNYN 233 >gi|260587331|ref|ZP_05853244.1| regulatory protein VanR [Blautia hansenii DSM 20583] gi|260542198|gb|EEX22767.1| regulatory protein VanR [Blautia hansenii DSM 20583] Length = 235 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 41/222 (18%), Positives = 89/222 (40%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G + S + L + ++ L G Sbjct: 15 ILIVEDDTDINNLLFTALKKQGYTATQAFSGTEAKMLLKMENFALILLDLML--PGISGE 72 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ I+ +I ++ +L ++ +G DD + KP +E+LARV RR Sbjct: 73 EVLEFIKEQGNSAVIILTAKDTLDDKVNLLIAGADDYITKPFEIQEVLARVQVQLRRSVQ 132 Query: 122 SNNRAETGPIRVFSDGRDPEVQ---GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 N ++ D +++ + + ++E ILE L+ + + +K IF + Sbjct: 133 EGNSNVLSHKQMVLDREKFQIKVEGQLMGKITKQEFSILELLLKHPKQVFSKEDIFEYAW 192 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 E ++ HIS +RKK++ + +++ +GY + Sbjct: 193 EEP-YMGETKTLDVHISNIRKKIKEVTKEEYIETVWGIGYRL 233 >gi|168181983|ref|ZP_02616647.1| aspartate aminotransferase [Clostridium botulinum Bf] gi|237796826|ref|YP_002864378.1| response regulator [Clostridium botulinum Ba4 str. 657] gi|182674789|gb|EDT86750.1| aspartate aminotransferase [Clostridium botulinum Bf] gi|229262727|gb|ACQ53760.1| response regulator [Clostridium botulinum Ba4 str. 657] Length = 226 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 42/220 (19%), Positives = 88/220 (40%), Gaps = 3/220 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 L++D + I L +G ++ + + D++ I+ L Sbjct: 4 IFLVEDDKAITKNLILLLRSEGFTVTHAPTRSEALAALVGNKFDLALIDISL--PDGNGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + I+ +P+I ++ + + + G DD + KP RE++AR+ + R+ Sbjct: 62 TVCTEIKETQDIPVIFLTASGDEASVVTGLNIGADDYITKPFRPRELIARIRSALRKSGH 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 S + E I V + G L E R+L + N + ++++ ++ Sbjct: 122 SPSAFEILGIHVDMASGVVKKDGSEVFLSALEYRLLLVFINNPKSIITRSRLLDELWDAA 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 E V +N + +I +LR+K+ N + + R GY + Sbjct: 182 GEFVNDNTLTVYIKRLREKIENNPASPQIILTIRGTGYKL 221 >gi|85710035|ref|ZP_01041100.1| DNA-binding response regulator [Erythrobacter sp. NAP1] gi|85688745|gb|EAQ28749.1| DNA-binding response regulator [Erythrobacter sp. NAP1] Length = 264 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 40/229 (17%), Positives = 84/229 (36%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L+DD A +++ G + S + D+ ++ GE L Sbjct: 25 ILLVDDEATLREPLAEYLAGQGFCVTEAQSGAAARSALTEVSPDIVLLDIM--MPGEDGL 82 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R + +P+I ++ + + G DD + KP RE++AR+ ++ RR+ Sbjct: 83 SLCRHLVETRGLPVIFLTARGEATDRIVGLELGADDYIVKPFEPRELVARIRSVLRRVGR 142 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF---------PLPRRERRILEYLMANRGKRVAKTQ 172 A + + P+ E R+L + N + + + Sbjct: 143 GAASAPEAEDWHYHFEGWVLDPLKRKLTDAEGVTVPISTAEFRLLRAFLDNPRQVMDRDL 202 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + + G + V++ +S+LR+K+ + + + R GY Sbjct: 203 LLDLVQGRTAHLFD-RAVDNQVSRLRRKIEVDTSDPQLILTVRGGGYRF 250 >gi|28379577|ref|NP_786469.1| response regulator [Lactobacillus plantarum WCFS1] gi|254557719|ref|YP_003064136.1| response regulator [Lactobacillus plantarum JDM1] gi|300769515|ref|ZP_07079401.1| response regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308181805|ref|YP_003925933.1| response regulator [Lactobacillus plantarum subsp. plantarum ST-III] gi|28272417|emb|CAD65340.1| response regulator [Lactobacillus plantarum WCFS1] gi|254046646|gb|ACT63439.1| response regulator [Lactobacillus plantarum JDM1] gi|300492930|gb|EFK28112.1| response regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308047296|gb|ADN99839.1| response regulator [Lactobacillus plantarum subsp. plantarum ST-III] Length = 229 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 42/227 (18%), Positives = 90/227 (39%), Gaps = 9/227 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + ++G + ++ D++ + ++ + Sbjct: 3 ILVVDDDKEIAQLLEIYIKNEGYEPISAYNGREALTKLNTN-PDIALMILDIMMPEMDGI 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + +R SQ+P++ +S + +G DD V KP + EI+ARV ++ RR + Sbjct: 62 EVIKEVRKDSQLPILVLSAKTGDMDKIQGLITGADDYVTKPFNPLEIMARVKSLLRRSEN 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQG------EVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + E + + + + + L E IL L ++ + + IF Sbjct: 122 NVTTTEPDILDIGPLTINKDSHEVKTLTGKDIQLTALEFGILYLLASHPNRVFSADDIFE 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 ++ + V V H+S LR K+ G + + +GY I+ Sbjct: 182 RVW-QQESIVSAKTVMVHVSHLRDKIEEATDGEKVIQTVWGVGYKIE 227 >gi|186683796|ref|YP_001866992.1| two component transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186466248|gb|ACC82049.1| two component transcriptional regulator, winged helix family [Nostoc punctiforme PCC 73102] Length = 247 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 46/228 (20%), Positives = 90/228 (39%), Gaps = 9/228 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++IDD + + G + + L + D+ ++ L G V Sbjct: 4 ILVIDDDPAISELVAVNLEMAGYDVSQAEDGIKGQALALQLQPDLIMLDLMLPRVDGFTV 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R S++P++ ++ Q ++ F++G DD + KP E+LARV A+ RR Sbjct: 64 CQRLRRDDRTSEIPVLMLTALSQTQDKVEGFNAGADDYLTKPFEVEELLARVRALLRRTD 123 Query: 121 VSNNRAETGPIRVF------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 A+ I + + + + L E +L L+ G+ V+ ++I Sbjct: 124 RIPQAAKHSEILNYGSLTLVPERFEAIWFNDTVKLTHLEFELLHCLLQRHGQTVSPSEIL 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 ++G +D + + HI LR KL + + GY ++ Sbjct: 184 REVWG-YDPDDDIETIRVHIRHLRTKLEPDPRHPRYIKTVYGAGYCLE 230 >gi|255281413|ref|ZP_05345968.1| DNA-binding response regulator YycF [Bryantella formatexigens DSM 14469] gi|255267901|gb|EET61106.1| DNA-binding response regulator YycF [Bryantella formatexigens DSM 14469] Length = 228 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 45/223 (20%), Positives = 90/223 (40%), Gaps = 4/223 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + G + + R+ + I ++ Sbjct: 6 ILIVEDEEKLARTMGDFLKFQGYDVCCAANGREALATFYKERKTLDLILLDIMMPDISGY 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IR S +P+I ++ S++ + F+ G DD + KP + + A+ +R Sbjct: 66 EVLKEIRKTSNIPVIMLTARSSVEDQMSGFEKGADDYITKPYTLELVRLHIEAVLKRAGK 125 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 N E I V D + + + R+E +L Y + N G +A+ I A++G + Sbjct: 126 LANILEYQDISVNLDAKKVYWKDKYIETTRKEYELLVYFIENSGIVLARNNILDAVWG-Y 184 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI-DWN 223 D + V++ + +LRKKL + S +GY + N Sbjct: 185 DYVGDIRTVDTLVKQLRKKLTE--ECTYIKSVYGVGYLFGEGN 225 >gi|187934340|ref|YP_001885676.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B] gi|187722493|gb|ACD23714.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B] Length = 230 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 41/229 (17%), Positives = 85/229 (37%), Gaps = 11/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ ++G + E + + ++ Sbjct: 5 ILIVDDEKEIRNLLEINLKNEGYHVFKAKCGEEALKILEKEEVHLMVLDVM--MPDMDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-------REILARVAA 114 E+ +R +P++ +S + +G DD V KP ++ R + R Sbjct: 63 EVCSKVRERYNIPILMLSAKGEDIDKIQGIMTGADDYVCKPFNNLELTVRIRALFRRTYF 122 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + +++VS++ + + + L RE IL L NRG+ + +IF Sbjct: 123 LNTKIQVSDDIIRIESMIIDKWKHKITIANNEVSLTAREFEILYLLATNRGRVFSAEEIF 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222 ++ N V H+S+LR KL G + + +GY I+ Sbjct: 183 EKVWKEK-YYQSNNTVMVHMSRLRDKLEKHMEGNKIIHTVWGVGYKIEK 230 >gi|49478095|ref|YP_037336.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|196037738|ref|ZP_03105048.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|229092209|ref|ZP_04223390.1| DNA-binding response regulator [Bacillus cereus Rock3-42] gi|49329651|gb|AAT60297.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|196031008|gb|EDX69605.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|228691200|gb|EEL44964.1| DNA-binding response regulator [Bacillus cereus Rock3-42] Length = 225 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 42/221 (19%), Positives = 93/221 (42%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L DD +++ +G + + + + ++ ++ Sbjct: 6 ILLADDDKHIRELLHYHLQKEGFKVFEAEDGKVAQEVLEKGNIHLAIVDIM--MPFVDGY 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L IR + +P+I ++ L F SG DD + KP E++ R+ A+ RR ++ Sbjct: 64 TLCEEIRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQM 123 Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + T + G + + G+ LP +E +L L + G+ ++ ++ ++G+ Sbjct: 124 LSADIITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM 183 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D +E V+ H+ +LR + + + + R LGY ++ Sbjct: 184 -DFEGDERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 223 >gi|319950949|ref|ZP_08024821.1| putative two-component system response regulator [Dietzia cinnamea P4] gi|319435371|gb|EFV90619.1| putative two-component system response regulator [Dietzia cinnamea P4] Length = 227 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 93/224 (41%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V++ +G +E + R D ++ L Sbjct: 3 ILVVDDDQAVRESLRRSLTFNGYDVELAGDGVEAIERVDADRPDAVILDVM--MPRRDGL 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ RI+R+ P++ ++ ++ + D+G DD + KP E+LAR+ A+ RR Sbjct: 61 EVCRILRSRGDDLPVLMLTARDAVSERVAGLDAGADDYLPKPFALEELLARLRALLRRRG 120 Query: 121 VSNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + +R+ R+ L R E +LE LM + + + ++ I Sbjct: 121 PDAEEVDEVLEFEDLRMDLATREVSRGERRIQLTRTEFSLLELLMHHPRRVLTRSHILEE 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G +D N +E +I LR+K + + + R +GY + Sbjct: 181 VWG-YDFPTSGNALEVYIGYLRRKTEGEGESRLIHTVRGVGYVL 223 >gi|291519285|emb|CBK74506.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Butyrivibrio fibrisolvens 16/4] Length = 229 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 42/225 (18%), Positives = 93/225 (41%), Gaps = 7/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD + ++ + + + E + E +S I ++ Sbjct: 6 ILVADDESRMRKLIRDYLVREDYEVVEAENGEQALDMFYMDSE-ISLIILDVMMPKVDGF 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 + + IR S +P++ ++ L+ F+ G D+ +NKP + ++ARV Sbjct: 65 AVLKEIRETSSIPVLMLTAKGEENDVLNGFELGADEYINKPFSPKILMARVNAVLRRSTD 124 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + E G I++ D G L +E +L Y + N G +++ +I + ++ Sbjct: 125 DSLGKKVVEAGGIQLDVDAHVATNDGNPVELSVKEFELLYYFINNEGIALSREKILNHVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 +D + +++H+ KLR KL +K + + +GY + + Sbjct: 185 D-YDYFGDARTIDTHVKKLRSKLDDKGN--YIKTIWGMGYKFEVD 226 >gi|269975939|ref|ZP_06182943.1| response regulator MprA [Mobiluncus mulieris 28-1] gi|307700377|ref|ZP_07637416.1| putative response regulator MprA [Mobiluncus mulieris FB024-16] gi|269935767|gb|EEZ92297.1| response regulator MprA [Mobiluncus mulieris 28-1] gi|307614362|gb|EFN93592.1| putative response regulator MprA [Mobiluncus mulieris FB024-16] Length = 255 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 53/232 (22%), Positives = 105/232 (45%), Gaps = 13/232 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++D + G + L ++ + D+ ++ L Sbjct: 26 LLVVDDEPNIRDLLASSLRFAGYEVFSAGDGTEALRLATTEKPDLVILDVML--PDMDGF 83 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R +RA +P++ ++ ++ ++ +G DD V KP E++AR+ AI RR K Sbjct: 84 TVTRKLRAAGIDMPILFLTAKDDMRDKVEGLQAGGDDYVTKPFGLEEVVARINAILRRTK 143 Query: 121 VSNNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 ++ + + + G++ L E ++L YLM N G+ V+K+QI + Sbjct: 144 HGSSEQPLLRVADLELDDNLYEVHRNGKLIDLSPTEFKLLRYLMVNEGRVVSKSQILDHV 203 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-----FDPVDSKRFLGYSI-DWN 223 + +D + +VES+IS LR+KL + ++R +GY + D N Sbjct: 204 W-EYDWEGDAAIVESYISYLRRKLDVPDEHGNIPPSLIQTRRGVGYLLRDPN 254 >gi|160880258|ref|YP_001559226.1| two component transcriptional regulator [Clostridium phytofermentans ISDg] gi|160428924|gb|ABX42487.1| two component transcriptional regulator, winged helix family [Clostridium phytofermentans ISDg] Length = 231 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 35/226 (15%), Positives = 74/226 (32%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + + + + + ++ L Sbjct: 6 ILVVDDEPKILEVVASFLESQDYQVFQAENGAKAFEIFEKENISLIILDLML--PDITGE 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH------HREILARVAAI 115 E+ + IR S+VP+I ++ L+ + G DD + KP + + R + Sbjct: 64 EICKKIRKTSRVPIIMLTAKVEENNLLEGLEIGADDYITKPFRLKELLARVKAVLRRTSE 123 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + + + L E IL L+ GK + ++ Sbjct: 124 ELVPLFNKISFDNDNLIIDFGKDLVLKNQSPVNLTPTEFNILSALIKYPGKVFTREELIE 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 G + + V+SHI LR+K+ + V + GY Sbjct: 184 FALG-SEFEGFDRAVDSHIKNLRQKIEDNPRTPKYVLTIHGKGYKF 228 >gi|30021338|ref|NP_832969.1| two-component response regulator [Bacillus cereus ATCC 14579] gi|118478527|ref|YP_895678.1| two-component response regulator [Bacillus thuringiensis str. Al Hakam] gi|196042921|ref|ZP_03110160.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|206968886|ref|ZP_03229841.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|218233754|ref|YP_002367955.1| DNA-binding response regulator [Bacillus cereus B4264] gi|228921982|ref|ZP_04085293.1| DNA-binding response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228953540|ref|ZP_04115583.1| DNA-binding response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229070715|ref|ZP_04203945.1| DNA-binding response regulator [Bacillus cereus F65185] gi|229080448|ref|ZP_04212969.1| DNA-binding response regulator [Bacillus cereus Rock4-2] gi|229097707|ref|ZP_04228662.1| DNA-binding response regulator [Bacillus cereus Rock3-29] gi|229103767|ref|ZP_04234447.1| DNA-binding response regulator [Bacillus cereus Rock3-28] gi|229116716|ref|ZP_04246100.1| DNA-binding response regulator [Bacillus cereus Rock1-3] gi|229128513|ref|ZP_04257491.1| DNA-binding response regulator [Bacillus cereus BDRD-Cer4] gi|229145816|ref|ZP_04274196.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24] gi|229151413|ref|ZP_04279616.1| DNA-binding response regulator [Bacillus cereus m1550] gi|229179503|ref|ZP_04306856.1| DNA-binding response regulator [Bacillus cereus 172560W] gi|229185458|ref|ZP_04312640.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1] gi|296503743|ref|YP_003665443.1| two-component response regulator [Bacillus thuringiensis BMB171] gi|29896892|gb|AAP10170.1| Two-component response regulator [Bacillus cereus ATCC 14579] gi|118417752|gb|ABK86171.1| two-component response regulator [Bacillus thuringiensis str. Al Hakam] gi|196026405|gb|EDX65073.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|206735927|gb|EDZ53085.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|218161711|gb|ACK61703.1| DNA-binding response regulator [Bacillus cereus B4264] gi|228598046|gb|EEK55684.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1] gi|228604004|gb|EEK61472.1| DNA-binding response regulator [Bacillus cereus 172560W] gi|228631956|gb|EEK88582.1| DNA-binding response regulator [Bacillus cereus m1550] gi|228637647|gb|EEK94097.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24] gi|228654706|gb|EEL10566.1| DNA-binding response regulator [Bacillus cereus BDRD-Cer4] gi|228666548|gb|EEL22006.1| DNA-binding response regulator [Bacillus cereus Rock1-3] gi|228679643|gb|EEL33840.1| DNA-binding response regulator [Bacillus cereus Rock3-28] gi|228685652|gb|EEL39575.1| DNA-binding response regulator [Bacillus cereus Rock3-29] gi|228702750|gb|EEL55215.1| DNA-binding response regulator [Bacillus cereus Rock4-2] gi|228712385|gb|EEL64330.1| DNA-binding response regulator [Bacillus cereus F65185] gi|228806124|gb|EEM52700.1| DNA-binding response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228837590|gb|EEM82920.1| DNA-binding response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|296324795|gb|ADH07723.1| two-component response regulator [Bacillus thuringiensis BMB171] Length = 225 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 42/221 (19%), Positives = 93/221 (42%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L DD +++ +G + + + + ++ ++ Sbjct: 6 ILLADDDKHIRELLHYHLQKEGFKVFEAEDGKVAQDVLEKENIHLAIVDIM--MPFVDGY 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L IR + +P+I ++ L F SG DD + KP E++ R+ A+ RR ++ Sbjct: 64 TLCEEIRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQM 123 Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + T + G + + G+ LP +E +L L + G+ ++ ++ ++G+ Sbjct: 124 LSADIITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM 183 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D +E V+ H+ +LR + + + + R LGY ++ Sbjct: 184 -DFEGDERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 223 >gi|318056745|ref|ZP_07975468.1| putative two-component system response regulator [Streptomyces sp. SA3_actG] gi|318080955|ref|ZP_07988287.1| putative two-component system response regulator [Streptomyces sp. SA3_actF] Length = 225 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 43/219 (19%), Positives = 92/219 (42%), Gaps = 5/219 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + + +G + + D+ ++ L G +E Sbjct: 6 LVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFRDTKPDLVLLDLML--PGRDGIE 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLKV 121 + R+IRA S VP++ ++ + +SG DD + KP +E++AR+ A R + Sbjct: 64 VCRLIRAESGVPVVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEEP 123 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + G + + G + +G+ L E +L L + + + ++G + Sbjct: 124 APEQLTIGDLVIDVAGHSVKREGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWG-Y 182 Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219 A + +V H+ +LR K+ + V + R +GY Sbjct: 183 RHAADTRLVNVHVQRLRSKVERDPERPEIVVTVRGVGYK 221 >gi|168178984|ref|ZP_02613648.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|168182022|ref|ZP_02616686.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|226950786|ref|YP_002805877.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] gi|237796792|ref|YP_002864344.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] gi|182670193|gb|EDT82169.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|182674867|gb|EDT86828.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|226841224|gb|ACO83890.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] gi|229263365|gb|ACQ54398.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] Length = 230 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 37/227 (16%), Positives = 86/227 (37%), Gaps = 9/227 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + +G + + E S + ++ ++ Sbjct: 5 ILIVDDDKTIVEFLQIFLIKEGYEVRISYNGEEALDKIRSEQFNLILMDIM--MPKLDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-----ARVAAIY 116 + I+ + +P+I ++ S Q + F SG DD + KP E+ Sbjct: 63 GAIKGIKKLTNIPIIFLTAKDSQQDKIKGFISGCDDYITKPFDLVELSLRVSAILKRVST 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 ++ + + + + + + L +E IL L N+G+ ++I+ Sbjct: 123 SVVEENEDIIKVKDLELNLKEHTLYKEKNEIKLTPKEFDILFLLARNKGRIFPSSEIYER 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222 ++G + +N + +HI LR+KL + + + +GY I+ Sbjct: 183 VWGQ-EFLENDNSLLTHIRNLREKLSDTVKNSKYIKTVWGVGYKIEK 228 >gi|331268875|ref|YP_004395367.1| winged helix family two component transcriptional regulator [Clostridium botulinum BKT015925] gi|329125425|gb|AEB75370.1| two component transcriptional regulator, winged helix family [Clostridium botulinum BKT015925] Length = 223 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 43/226 (19%), Positives = 98/226 (43%), Gaps = 9/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D ++ F +G + + + S ++ ++ + Sbjct: 3 ILIIEDEDRMRKLLRDYFKKEGFCVFEGENGIEGLEIFKSNNINIVILDIMI--PYLDGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117 ++ + IR S+VP+I ++ + L ++ G DD V KP + ++ A + Sbjct: 61 KVCKNIRELSKVPIIMLTAKSEEEDKLLGYELGADDYVTKPFSPKVLVAKVKALLKRSII 120 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + N + + + ++ G+V L +E +L + + N+ +++ ++ + Sbjct: 121 DINEEKNIINYNGLEINEPSNEVKIDGKVIVLSPKEYDLLLFFVKNKDIVLSRDKLLDRV 180 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 +G FD V++HI +LR+KL+NK D + + R GY + N Sbjct: 181 WG-FDYDGGLRTVDTHIKRLREKLKNK--ADYIVTVRGKGYKFEVN 223 >gi|153940841|ref|YP_001389634.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|152936737|gb|ABS42235.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|295317726|gb|ADF98103.1| DNA-binding response regulator [Clostridium botulinum F str. 230613] Length = 225 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 44/224 (19%), Positives = 94/224 (41%), Gaps = 6/224 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD + + ++G ++ S QS D+ ++ L Sbjct: 5 ILVIDDEVKIIEVIKLYLENEGYTVIQATSGIEALKKQSEFNPDLLILDLML--PDISGE 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + IR S+VP+I ++ S + L+ + G DD + KP ++++A+V A+ +R+K Sbjct: 63 NVCERIRKESEVPIIMLTAKSSEDSILNGYSIGSDDYITKPFSPKQLVAKVNAVLKRVKG 122 Query: 122 SNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + + + E + L E +IL L N K ++ ++ I Sbjct: 123 NQCENLIFNNELIIDIVNKKVEYNNKEIILTASEYKILFILARNPNKIFSREELMDYI-S 181 Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 + + + ++++HI +R KL + + R +GY + Sbjct: 182 RDNICIYDRIIDTHIKNIRAKLDQDSKNPTYIKTIRGMGYRFNV 225 >gi|153852940|ref|ZP_01994377.1| hypothetical protein DORLON_00362 [Dorea longicatena DSM 13814] gi|149754582|gb|EDM64513.1| hypothetical protein DORLON_00362 [Dorea longicatena DSM 13814] Length = 235 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 43/234 (18%), Positives = 87/234 (37%), Gaps = 17/234 (7%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G + + + D+ ++ L G Sbjct: 4 ILIVEDDRKIAQLESDYLESNGYETKIIEDGKKALSELKTNHYDLILLDLML--PGCSGY 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R IR +P++ ++ + G DD + KP +++ARV + +R + Sbjct: 62 DICRKIRDEIDIPILMVTARTEGVDVIRGLGLGADDYITKPFDPSQLVARVRSHLKRYER 121 Query: 122 SNNRAETGPIRVF-------------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 R + + GE LP RE +L +L N Sbjct: 122 LTTRHKEREEKENAQEQIKVEDVVIEPQTWRVWKAGEEVKLPHREFELLVFLAKNPNIVF 181 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 +K +F I+G FD + V HI++LR+KL + +++ GY ++ Sbjct: 182 SKEALFEKIWG-FDYVSDAATVSVHINRLREKLEDDPRDPKIIETVWGAGYRLN 234 >gi|309389720|gb|ADO77600.1| two component transcriptional regulator, winged helix family [Halanaerobium praevalens DSM 2228] Length = 229 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 51/222 (22%), Positives = 98/222 (44%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D + + +G + F++ + D+ ++ L G + Sbjct: 5 ILLIEDDSQIARFIELELEHEGYQVTKFDNGYDGINILKEKSFDLLLLDIML--PGLNGM 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ IR S +P+I ++ L+ + D G DD + KP E+LAR+ A RR + Sbjct: 63 EVCSQIREFSDIPIIMLTAKSELEDKVKGLDIGADDYLTKPFEIEELLARIRAHLRRDEG 122 Query: 122 SNNRAETGPIRVFS---DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + D + GE L ++E +L YL+ N G V++ ++ + ++ Sbjct: 123 NLENENILKTADVEVKLDAHIVKRAGEEIELTKKEYDLLVYLIRNEGIVVSRDKLLNNVW 182 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G +D E N+V+ +I LR K+ + + + R +GY + Sbjct: 183 G-YDYTGETNIVDVYIRYLRSKIDDPFSQKIIHTVRGVGYVL 223 >gi|224541344|ref|ZP_03681883.1| hypothetical protein CATMIT_00504 [Catenibacterium mitsuokai DSM 15897] gi|224525781|gb|EEF94886.1| hypothetical protein CATMIT_00504 [Catenibacterium mitsuokai DSM 15897] Length = 223 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 49/222 (22%), Positives = 96/222 (43%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ G + E + + D++ ++ G Sbjct: 5 IMVVDDEMHIRELVRFYLDKAGFDTIEAANAEEALDIVENQYIDLAVVDIM--MPGMDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL +R + + P+I ++ + L F G+DD V KP E++ARV I +R + Sbjct: 63 ELVEQMRQYREFPVIMLTAKSQSKDKLRGFSLGIDDYVTKPFDPDELMARVKTILKRYSI 122 Query: 122 SNNRAETG-PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 +++ + D + Q +V LP ++ + L N + + Q+ I+G+ Sbjct: 123 NSSNVVKIGDVIFDGDKYEVRYQEQVIHLPLKQFELAFELAKNPNQIFTREQLIEKIWGM 182 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 D + V+ HI ++R+ L + GF V + R LGY I+ Sbjct: 183 -DYDGFDRTVDVHIKRIRENLGHLPGFK-VVTVRGLGYKIEV 222 >gi|169627776|ref|YP_001701425.1| putative DNA-binding response regulator PhoP [Mycobacterium abscessus ATCC 19977] gi|169239743|emb|CAM60771.1| Putative DNA-binding response regulator PhoP [Mycobacterium abscessus] Length = 247 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 48/224 (21%), Positives = 87/224 (38%), Gaps = 10/224 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + + G + +S L + R D ++ G Sbjct: 24 LVVDDESNIVELLSVSLKFQGFDVYTADSGAAALDLARTVRPDAVILDVM--MPGMDGFG 81 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPI-----HHREILARVAAIY 116 + R +RA P + ++ LQ + G DD V KP R + + Sbjct: 82 VLRRLRADGIDAPTLFLTARDGLQDKIAGLTLGADDYVTKPFSLEEVVARLRVILRRSGM 141 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 +R I + D + GE L E +L Y M N G ++K +I Sbjct: 142 GSEPARKSRLSFADIELDEDTHEVWKAGEPVALSPTEFTLLRYFMINAGTVLSKPKILDH 201 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +D + NVVES++S LR+K+ + + + R +GY + Sbjct: 202 VW-RYDFGGDVNVVESYVSYLRRKI-DNGEKRLLHTLRGVGYVL 243 >gi|325289049|ref|YP_004265230.1| two component transcriptional regulator, winged helix family [Syntrophobotulus glycolicus DSM 8271] gi|324964450|gb|ADY55229.1| two component transcriptional regulator, winged helix family [Syntrophobotulus glycolicus DSM 8271] Length = 227 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 46/223 (20%), Positives = 95/223 (42%), Gaps = 5/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ +AL G + + D+ I+ Sbjct: 6 IMIVDDDPNIRELVLALLHRSGFAACEAADGREALQKMLNDNPDLVIIDVM--MPNMDGF 63 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL R +R + + P+I ++ L + + F G DD + KP E++ARV A+ RR K Sbjct: 64 ELCRHLRRYYENLPVIMLTAKGELASKVKGFGLGADDYLTKPFEGDELIARVQALLRRYK 123 Query: 121 VSNNRAETGPIR-VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + ++ + + + G +P +E ++ L GK ++ Q+ I+G Sbjct: 124 IEASQVIQTGNVLIDKNSYSITLNGVREDIPLKEFELIFKLAGFPGKTFSRNQLIEDIWG 183 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + D E ++ H+++LR + + + + R LGY ++ Sbjct: 184 V-DFEGNERTLDVHVNRLRDRFPEETAGFKITTVRGLGYRLEV 225 >gi|284045956|ref|YP_003396296.1| two component transcriptional regulator [Conexibacter woesei DSM 14684] gi|283950177|gb|ADB52921.1| two component transcriptional regulator, winged helix family [Conexibacter woesei DSM 14684] Length = 231 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 47/222 (21%), Positives = 94/222 (42%), Gaps = 8/222 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + D G + +S R + ++ L + E Sbjct: 9 LVVDDEPNIVDVISMALRYQGFEVASASSGAEALAQVRQFRPHLLLLDVML--PDMEGFE 66 Query: 63 LPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R + ++VP++ ++ + + G DD V KP E++AR+ I RR + Sbjct: 67 VARRLGAERARVPIVFLTARDATDDRVRGLTLGGDDYVTKPFSLEELVARIRTILRRTGM 126 Query: 122 SNNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + D R+ G L E R+L YLM N + + + Q+ ++ Sbjct: 127 AEPESSRLVFDDLELDEDTREVTRAGAYVELTATEYRLLRYLMLNPRRVLTRAQLLEHVW 186 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D + V+E+++S +RKKL + G + + R +GY++ Sbjct: 187 S-YDFGGDARVLETYVSYVRKKL-DAHGPPLIQTVRGVGYAL 226 >gi|256370539|ref|YP_003108050.1| phosphate regulon transcriptional regulatory protein Phob [Brucella microti CCM 4915] gi|256000702|gb|ACU49101.1| phosphate regulon transcriptional regulatory protein Phob [Brucella microti CCM 4915] Length = 228 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 43/224 (19%), Positives = 89/224 (39%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++D + +G ++ + E + D+ ++ L G + Sbjct: 7 IAVVEDEEALSVLLRYNLEGEGYQVDTMLRGDEAEIALRESVPDLLILDWML--PGVSGI 64 Query: 62 ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIY 116 EL R +R + P+I ++ + G DD V KP E+ + Sbjct: 65 ELCRRLRQRPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKAMLRR 124 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + ++ + G + + + + L E R+LEY M + G+ +++Q+ Sbjct: 125 ANPSILSHVLKVGDLLLDRQQHRVYRKEKEVHLGPTEFRLLEYFMMSPGRVFSRSQLLDG 184 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G D V++ V+ H+ +LRK + DP+ + R GYS Sbjct: 185 VWG-PDIYVDDRTVDVHVGRLRKAINVGRAADPIRTVRGAGYSF 227 >gi|254456179|ref|ZP_05069608.1| phosphate regulon transcriptional regulatory protein PhoB [Candidatus Pelagibacter sp. HTCC7211] gi|207083181|gb|EDZ60607.1| phosphate regulon transcriptional regulatory protein PhoB [Candidatus Pelagibacter sp. HTCC7211] Length = 227 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 39/221 (17%), Positives = 93/221 (42%), Gaps = 4/221 (1%) Query: 4 LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVLE 62 + +D + +G + + E + D+ ++ L G + + Sbjct: 7 IAEDETSIVTLLKYNLEKEGHKVSFCENGEEALKQIKDKQPDLILMDWMLPDLSGVDICK 66 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRLK 120 + + + +P+I ++ + L FD+G DD V KP +E+ AR+ + + + Sbjct: 67 NLKKDKKFNDIPIIMLTAKGEEEDKLKAFDTGADDYVTKPFSQKELNARIKSLLRRSKPQ 126 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 S + E +++ + L E ++L++ + N + ++ Q+ + ++G Sbjct: 127 SSVDVVEFTDLKIDRITKRVYRNNTEISLGPTEFKLLDFFIKNPKRVYSREQLLNNVWGE 186 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + VE V+ HI +LR+ + + + + R GYS++ Sbjct: 187 -NIYVESRTVDVHIRRLRQAINIENTKPLIRTVRSAGYSLE 226 >gi|190573011|ref|YP_001970856.1| putative phosphate regulon two-component response regulator transcriptional regulator [Stenotrophomonas maltophilia K279a] gi|254521224|ref|ZP_05133279.1| phosphate regulon transcriptional regulatory protein PhoB [Stenotrophomonas sp. SKA14] gi|190010933|emb|CAQ44542.1| putative phosphate regulon two-component response regulator transcriptional regulatory protein [Stenotrophomonas maltophilia K279a] gi|219718815|gb|EED37340.1| phosphate regulon transcriptional regulatory protein PhoB [Stenotrophomonas sp. SKA14] Length = 229 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 84/224 (37%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ + + D+ ++ L G L Sbjct: 5 ILIVDDEPAIREMVAFALRKGDYEPVHAGDAREAQTAIADRVPDLILLDWML--PGTSGL 62 Query: 62 ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIY 116 +L R R +VP+I ++ + ++GVDD V KP RE+ R Sbjct: 63 DLARRWRKETLTREVPIIMLTARGEENDRVGGLEAGVDDYVVKPFSARELLARIRAVMRR 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 R + GPIR+ + P+ E R+L + M + + + Q+ Sbjct: 123 AREDDEDGSVAVGPIRIDGAAHRVFANDQPVPIGPTEYRLLHFFMTHPERVYTRAQLLDH 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G VEE ++ HI +LRK L + V + R GY Sbjct: 183 VWGGSVY-VEERTIDVHIRRLRKTLEPFNAENMVQTVRGAGYRF 225 >gi|167551081|ref|ZP_02344836.1| response regulator [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205324105|gb|EDZ11944.1| response regulator [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 240 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 41/224 (18%), Positives = 83/224 (37%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + I + N + D+ ++ L G L Sbjct: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLINHGDKVLPYVRQTPPDLILLDLML--PGTDGL 70 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118 L R IR S +P++ ++ L + G DD + KP RE + + + Sbjct: 71 TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + P+ + G+ L E R+L+ L K ++ Q+ + +Y Sbjct: 131 QRELQQQDAESPLMIDESRFQASWCGKALDLTPAEFRLLKTLSLEPSKVFSREQLLNHLY 190 Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + V + ++SHI LR+KL + + + +GY + Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 >gi|221067032|ref|ZP_03543137.1| two component heavy metal response transcriptional regulator, winged helix family [Comamonas testosteroni KF-1] gi|220712055|gb|EED67423.1| two component heavy metal response transcriptional regulator, winged helix family [Comamonas testosteroni KF-1] Length = 230 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 44/227 (19%), Positives = 97/227 (42%), Gaps = 10/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + D ++G +++ ++ L S D+ ++ L G L Sbjct: 3 ILVVEDEIKLADYLNKGLAEEGFTVDVAHNGIDGLHLASEMDYDLIVLDGML--PGIDGL 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + +R Q P++ ++ ++ + G DD + KP E++AR+ + RR Sbjct: 61 AVLAALRQTKQTPVLMLTARGQVEDRVKGLQCGADDYLVKPFAFSELVARLHVLLRRSGP 120 Query: 122 SNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 S + + R G+ L +E +L L+ +G+ +++T++ Sbjct: 121 SVAQTAPEATTLRLSDLELDLIRRRATRAGQRIELTAKEFNLLSLLLRRQGEVLSRTELA 180 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 S ++ + + E NVVE + +LR KL + + R +GY ++ Sbjct: 181 SQVWDM-NFDSETNVVEVAVRRLRLKLDQPFEKPLLHTVRGMGYVLE 226 >gi|66048256|ref|YP_238097.1| response regulator receiver:transcriptional regulatory protein, C-terminal [Pseudomonas syringae pv. syringae B728a] gi|71734112|ref|YP_277191.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. phaseolicola 1448A] gi|257485715|ref|ZP_05639756.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289628101|ref|ZP_06461055.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289651289|ref|ZP_06482632.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. aesculi str. 2250] gi|289677407|ref|ZP_06498297.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. syringae FF5] gi|298489418|ref|ZP_07007429.1| Phosphate regulon transcriptional regulatory protein phoB [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|302187091|ref|ZP_07263764.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. syringae 642] gi|63258963|gb|AAY40059.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Pseudomonas syringae pv. syringae B728a] gi|71554665|gb|AAZ33876.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. phaseolicola 1448A] gi|298155992|gb|EFH97101.1| Phosphate regulon transcriptional regulatory protein phoB [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320321732|gb|EFW77830.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. glycinea str. B076] gi|320331482|gb|EFW87422.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. glycinea str. race 4] gi|330870966|gb|EGH05675.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330890623|gb|EGH23284.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. mori str. 301020] gi|330937451|gb|EGH41417.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. pisi str. 1704B] gi|330952444|gb|EGH52704.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae Cit 7] gi|330970220|gb|EGH70286.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. aceris str. M302273PT] gi|330986909|gb|EGH85012.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. lachrymans str. M301315] gi|331011999|gb|EGH92055.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 229 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 45/224 (20%), Positives = 92/224 (41%), Gaps = 9/224 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A +++ G + + + + D+ ++ L G + Sbjct: 6 ILIVDDEAPIREMIAVALEMAGYDCIEAENSQQAHAIIVDRKPDLILLDWML--PGTSGI 63 Query: 62 ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IY 116 EL R ++ +P+I ++ + + G DD + KP RE++AR+ A Sbjct: 64 ELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 E G + + + G+ + E R+L++ M ++ + + Q+ Sbjct: 124 AGPTDGEAPIEVGGLLLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAYTRGQLLDQ 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + VEE V+ HI +LRK L + + V + R GY Sbjct: 184 VWG-GNVYVEERTVDVHIRRLRKALGDAYE-NLVQTVRGTGYRF 225 >gi|15607897|ref|NP_215271.1| two component system response transcriptional positive regulator PHOP [Mycobacterium tuberculosis H37Rv] gi|31791945|ref|NP_854438.1| two component system response transcriptional positive regulator PHOP [Mycobacterium bovis AF2122/97] gi|121636681|ref|YP_976904.1| putative two component system response transcriptional positive regulator phoP [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148821963|ref|YP_001286717.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis F11] gi|215402547|ref|ZP_03414728.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis 02_1987] gi|215410323|ref|ZP_03419131.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis 94_M4241A] gi|215426010|ref|ZP_03423929.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis T92] gi|215429607|ref|ZP_03427526.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis EAS054] gi|219556618|ref|ZP_03535694.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis T17] gi|224989153|ref|YP_002643840.1| putative two component system response transcriptional positive regulator [Mycobacterium bovis BCG str. Tokyo 172] gi|253797703|ref|YP_003030704.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis KZN 1435] gi|254231072|ref|ZP_04924399.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis C] gi|254363699|ref|ZP_04979745.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis str. Haarlem] gi|254549724|ref|ZP_05140171.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260199772|ref|ZP_05767263.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis T46] gi|260203946|ref|ZP_05771437.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis K85] gi|289442160|ref|ZP_06431904.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis T46] gi|289446322|ref|ZP_06436066.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis CPHL_A] gi|289553015|ref|ZP_06442225.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis KZN 605] gi|289568709|ref|ZP_06448936.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis T17] gi|289573376|ref|ZP_06453603.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis K85] gi|289744482|ref|ZP_06503860.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis 02_1987] gi|289749267|ref|ZP_06508645.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis T92] gi|289752806|ref|ZP_06512184.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis EAS054] gi|289756845|ref|ZP_06516223.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis T85] gi|289760884|ref|ZP_06520262.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis GM 1503] gi|294993216|ref|ZP_06798907.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis 210] gi|297633266|ref|ZP_06951046.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis KZN 4207] gi|297730249|ref|ZP_06959367.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis KZN R506] gi|298524247|ref|ZP_07011656.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|306774875|ref|ZP_07413212.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu001] gi|306783417|ref|ZP_07421739.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu003] gi|306787788|ref|ZP_07426110.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu004] gi|306802382|ref|ZP_07439050.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu008] gi|306806590|ref|ZP_07443258.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu007] gi|306970980|ref|ZP_07483641.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu010] gi|308369967|ref|ZP_07419731.2| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu002] gi|308372942|ref|ZP_07430463.2| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu005] gi|308374087|ref|ZP_07434824.2| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu006] gi|313657574|ref|ZP_07814454.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis KZN V2475] gi|1550635|emb|CAB02400.1| POSSIBLE TWO COMPONENT SYSTEM RESPONSE TRANSCRIPTIONAL POSITIVE REGULATOR PHOP [Mycobacterium tuberculosis H37Rv] gi|31617532|emb|CAD93642.1| POSSIBLE TWO COMPONENT SYSTEM RESPONSE TRANSCRIPTIONAL POSITIVE REGULATOR PHOP [Mycobacterium bovis AF2122/97] gi|121492328|emb|CAL70795.1| Possible two component system response transcriptional positive regulator phoP [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124600131|gb|EAY59141.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis C] gi|134149213|gb|EBA41258.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis str. Haarlem] gi|148720490|gb|ABR05115.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis F11] gi|224772266|dbj|BAH25072.1| putative two component system response transcriptional positive regulator [Mycobacterium bovis BCG str. Tokyo 172] gi|253319206|gb|ACT23809.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis KZN 1435] gi|289415079|gb|EFD12319.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis T46] gi|289419280|gb|EFD16481.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis CPHL_A] gi|289437647|gb|EFD20140.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis KZN 605] gi|289537807|gb|EFD42385.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis K85] gi|289542463|gb|EFD46111.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis T17] gi|289685010|gb|EFD52498.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis 02_1987] gi|289689854|gb|EFD57283.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis T92] gi|289693393|gb|EFD60822.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis EAS054] gi|289708390|gb|EFD72406.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis GM 1503] gi|289712409|gb|EFD76421.1| two component system response transcriptional positive regulator phoP [Mycobacterium tuberculosis T85] gi|298494041|gb|EFI29335.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|308216541|gb|EFO75940.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu001] gi|308325843|gb|EFP14694.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu002] gi|308331751|gb|EFP20602.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu003] gi|308335539|gb|EFP24390.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu004] gi|308339307|gb|EFP28158.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu005] gi|308343020|gb|EFP31871.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu006] gi|308346905|gb|EFP35756.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu007] gi|308350845|gb|EFP39696.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu008] gi|308359436|gb|EFP48287.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu010] gi|323720788|gb|EGB29858.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis CDC1551A] gi|326905021|gb|EGE51954.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis W-148] gi|328457482|gb|AEB02905.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis KZN 4207] Length = 247 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 86/224 (38%), Gaps = 10/224 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD A + + G + + R D ++ G Sbjct: 24 LVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVM--MPGMDGFG 81 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPI-----HHREILARVAAIY 116 + R +RA P + ++ SLQ + G DD V KP R + A Sbjct: 82 VLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAGK 141 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + N R I + + + G+ L E +L Y + N G ++K +I Sbjct: 142 GNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDH 201 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +D + NVVES++S LR+K+ + + + R +GY + Sbjct: 202 VW-RYDFGGDVNVVESYVSYLRRKI-DTGEKRLLHTLRGVGYVL 243 >gi|225374967|ref|ZP_03752188.1| hypothetical protein ROSEINA2194_00590 [Roseburia inulinivorans DSM 16841] gi|225213219|gb|EEG95573.1| hypothetical protein ROSEINA2194_00590 [Roseburia inulinivorans DSM 16841] Length = 230 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 40/228 (17%), Positives = 86/228 (37%), Gaps = 10/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD + + + + N+ + + ++ G Sbjct: 4 ILIIDDDRELCALIKRSVQAENIEADFCNTGKEGLQKLREQEYQLVVLDVM--MPGMDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL------ARVAAI 115 E IR +P++ + + + +G DD + KP E++ R Sbjct: 62 ETLEEIRKEYSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRRYTR 121 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + + + +++ + R F LP +E +L Y ++GK + K QI+ Sbjct: 122 FNQQAGAIQKLNFNGLQIDLENRSVTTSNGTFELPPKEFDLLLYCAKHQGKILTKQQIYE 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 ++G + N + + IS+LRKKL N + + + +GY + Sbjct: 182 EVWGEEYFYDDSN-IMAIISRLRKKLEVNPSSPKYIQTVKGIGYRFNK 228 >gi|197285448|ref|YP_002151320.1| DNA-binding transcriptional regulator BaeR [Proteus mirabilis HI4320] gi|227355932|ref|ZP_03840324.1| two-component system response regulator [Proteus mirabilis ATCC 29906] gi|194682935|emb|CAR43323.1| two-component system response regulator [Proteus mirabilis HI4320] gi|227163920|gb|EEI48822.1| two-component system response regulator [Proteus mirabilis ATCC 29906] Length = 235 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 41/222 (18%), Positives = 88/222 (39%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + I + + D+ ++ L G+ + Sbjct: 10 ILIVEDEPKLAQLLIDYLQASDYQTQWLADGTEVIQHIKQSHYDLVLLDLML--PGKDGI 67 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120 L + +R S +P+I ++ L + G DD + KP RE++ARV + R + Sbjct: 68 TLCKELRQFSDIPIIMVTAKTEEVDRLLGLEIGADDYICKPYSPREVVARVKTLLRRYYR 127 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + + + + ++ L E R+++ L GK +++ Q+ +Y Sbjct: 128 PQDIVQNSALVIIDEQAYQIQYHNKILDLTTAEFRLIKALATQPGKVLSRDQLMDHLYDD 187 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSID 221 + V + ++SHI LR+KL + + S GY + Sbjct: 188 Y-RIVTDRTIDSHIKNLRRKLEQLNDQIEFIRSIYGQGYRWE 228 >gi|328949779|ref|YP_004367114.1| two component transcriptional regulator, winged helix family [Marinithermus hydrothermalis DSM 14884] gi|328450103|gb|AEB11004.1| two component transcriptional regulator, winged helix family [Marinithermus hydrothermalis DSM 14884] Length = 221 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 44/220 (20%), Positives = 92/220 (41%), Gaps = 8/220 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD +++ A + + + L+ G Sbjct: 5 LVVDDDPAIREVLAAYLARERFEVLEAEDGLQALE----QAPGADLVILDLMLPGMDGWR 60 Query: 63 LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + +R +P++ ++ + + F+ G DD V KP RE++ARV A+ RR+ + Sbjct: 61 VAQELRRDWPDLPILMLTARGEEEERVRGFELGADDYVTKPFSPREVVARVRALLRRVGL 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + R+ ++G+ L R E +L L + G + ++ ++G Sbjct: 121 KDELVYGPLVIR-PRAREVLLEGQPVALSRLEFDLLLTLARHPGMVFTRERLLERVWGPG 179 Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 E V+ VV+ H++ LRKKL + +++ R +GY Sbjct: 180 FEGVD-RVVDVHVALLRKKLGDDAEHPRFIETVRGVGYRF 218 >gi|296118804|ref|ZP_06837380.1| DNA-binding response regulator MtrA [Corynebacterium ammoniagenes DSM 20306] gi|295968293|gb|EFG81542.1| DNA-binding response regulator MtrA [Corynebacterium ammoniagenes DSM 20306] Length = 232 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 41/226 (18%), Positives = 87/226 (38%), Gaps = 11/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + +G+ D+ ++ L G + Sbjct: 5 ILVVDDDPAISEMLTIVLESEGLQPIPITDGNDAVPAFEQHNPDLILLDLML--PGMNGV 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R IR S VP++ ++ + +SG DD V KP +E++ARV A RR + Sbjct: 63 DICRAIRRDSNVPIVMLTAKTDTVDVVLGLESGADDYVTKPFKPKELVARVRARLRRTET 122 Query: 122 SNNRAE-------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 +++ + E L E +L + G+ + ++ Sbjct: 123 TSSEIIEVGDLLVDVSEHTVIRRPADGGEDEELSLTPLEFDLLVEMARKPGQVHTREELL 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVD-SKRFLGYS 219 ++G + A + +V H+ +LR K+ + + + R +GY Sbjct: 183 EKVWG-YRHASDTRLVNVHVQRLRAKIEHDPEDPQIVLTVRGVGYK 227 >gi|80973243|gb|ABB53349.1| VanRB [Eggerthella lenta] Length = 219 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 51/221 (23%), Positives = 92/221 (41%), Gaps = 7/221 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + + A + G ++ + ++ L G Sbjct: 5 ILLVEDDDHICNTVRAFLAEAGYQVDACTDGNEAYTKFYENTYQLVILDIML--PGMNGH 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL R RA + P++ ++ + + FD+ DD V KP + +L RV A+ RR Sbjct: 63 ELLREFRAKNDTPILMMTALSDDENQIRAFDAEADDYVTKPFKMQILLKRVEALLRRSGA 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 G + + + G PL R+E IL L+ N+G+ + I S I+G + Sbjct: 123 LAKEIRVGRLTLLPEDFTVLCDGTELPLTRKEFEILLLLVQNKGRTLTHEIILSRIWG-Y 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 D + + V +HI LR KL + + + R +GY ++ Sbjct: 182 DFESDGSTVHTHIKNLRAKLPE----NIIKTIRGVGYRLEE 218 >gi|70726491|ref|YP_253405.1| hypothetical protein SH1490 [Staphylococcus haemolyticus JCSC1435] gi|123660200|sp|Q4L6C6|ARLR_STAHJ RecName: Full=Response regulator ArlR gi|68447215|dbj|BAE04799.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 219 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 48/219 (21%), Positives = 88/219 (40%), Gaps = 4/219 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + D S++ + S D+ ++ L L Sbjct: 4 ILIVEDEQNLARFLELELTHDNYSVDIEYEGQAGLDKALSNNYDLIILDLML--PNINGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R P+I I+ + D G DD + KP E+ R + Sbjct: 62 EICRRVRQEQSTPIIIITAKSDTYDKVTGLDYGADDYIVKPFEIEELF-ARIRAVLRRQP 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + I++ D + + GE + E +L L NR + + + QI ++G + Sbjct: 121 QKDIIDINGIKIDVDAFNVTINGEQLDFTKTEYDLLYLLATNRNRVLQREQILDHVWG-Y 179 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D VE NVV+ +I LR KL+ +++ R +GY I Sbjct: 180 DSEVETNVVDVYIRYLRNKLKPYGKDKTIETVRGVGYVI 218 >gi|251778440|ref|ZP_04821360.1| transcriptional regulatory protein ResD [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082755|gb|EES48645.1| transcriptional regulatory protein ResD [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 223 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 44/223 (19%), Positives = 98/223 (43%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++ DG ++ + E + S + D+ ++ L Sbjct: 5 ILIVEDELKIRFLIRDYLLKDGFNIFEASDGEEGLFQFSKEKIDLIILDIM--MPKMNGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119 E+ +R S VP+I ++ + L+ ++ G DD + KP + ++A+V A R Sbjct: 63 EMLEKLREVSNVPVIFLTAKGEEEDKLEGYEFGADDYMTKPFSPKVLVAKVKALLKRTRE 122 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + ++ + V + +V + L +E +L YL+ N +++ I ++G Sbjct: 123 DLDSSIQNFNGLSVNQLSHEVKVNDNIILLSPKEYELLIYLINNESIALSRDNILDNVWG 182 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + D + V+++I +LR+KL +K + + R GY + Sbjct: 183 I-DYYGDIRTVDTNIKRLREKLLDKSA--YIVTVRGSGYKFEV 222 >gi|327439728|dbj|BAK16093.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Solibacillus silvestris StLB046] Length = 234 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 40/227 (17%), Positives = 90/227 (39%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + G +G N+ D+ ++ L L Sbjct: 4 ILIVEDEQQIARVLQLELGFEGYETTIANTGTDGLLKFHEDEYDLVLLDVML--PELNGL 61 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR------EILARVAA 114 E+ + IR H++ P++ ++ +++ + D G +D + KP + R + Sbjct: 62 EVLKRIRKHNETVPVLLLTAKSNIEDKVTGLDYGANDYITKPFEFDELLARIRVALRFSH 121 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 S++ + + R+ L RE +L + M + ++ Q+ Sbjct: 122 KSAPEPTSSSVHTFQDLSLNEQTREVTRNALQIDLTPREFDLLLHFMKHAKLVQSREQLL 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 +A++G +D + NVV+ ++ LR+KL L + + R +GY + Sbjct: 182 NAVWG-YDYYGDTNVVDVYVRYLRQKLEVNLNLPPLLHTVRGVGYVL 227 >gi|295102835|emb|CBL00380.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Faecalibacterium prausnitzii L2-6] Length = 228 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 46/225 (20%), Positives = 89/225 (39%), Gaps = 10/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ G + E L + D+ ++ + Sbjct: 4 ILIVDDEPRIRELIRENLQYSGYTCEEAGDGSAALSLLTGGGYDLVILDLM--MPFMDGM 61 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 R +R P+I ++ L + G DD V KP RE++ARV A+ R Sbjct: 62 SCLREMRTRRINTPVIILTARGEEYDKLAGLEGGADDYVVKPFSPRELVARVKAVLNRTM 121 Query: 121 VSNN----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 G + + + +V GE L +E +L +L +N+G +++ +I Sbjct: 122 PRTEASDSTMTFGELSIDTASHTVKVSGEEVSLTPKEFDLLVFLASNKGIALSREKILQK 181 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ +D E+ V++H+ LR L G + + +GY D Sbjct: 182 VW-NYDYFGEDRTVDTHVKMLRGHLGKCRG--YIATVWGIGYKFD 223 >gi|153812004|ref|ZP_01964672.1| hypothetical protein RUMOBE_02397 [Ruminococcus obeum ATCC 29174] gi|149831903|gb|EDM86989.1| hypothetical protein RUMOBE_02397 [Ruminococcus obeum ATCC 29174] Length = 229 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 47/227 (20%), Positives = 87/227 (38%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + D G +E N + + D+ ++ L Sbjct: 4 ILIIEDEEAIADLEKDYLELSGFEVEIANRGDVGLEKALNEDYDLIILDLML--PEVDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R +R +P+I +S + G DD + KP E++ARV A R Sbjct: 62 DICRQVRQEKNIPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHMERYNR 121 Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N+ E I++ R V GE +E +L +L N + K ++F Sbjct: 122 LVGSSAVKNDIIEIRGIKIDKTARRIWVNGEEKTFTTKEFDLLTFLAENPNRVFTKAELF 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 I+ + + + V HI K+R+K+ N +++ +GY Sbjct: 182 RQIWDM-ESVGDIATVTVHIKKIREKIEFNTAKPQYIETIWGVGYRF 227 >gi|42519058|ref|NP_964988.1| two-component system response regulator [Lactobacillus johnsonii NCC 533] gi|41583345|gb|AAS08954.1| two-component system response regulator [Lactobacillus johnsonii NCC 533] Length = 231 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 46/224 (20%), Positives = 89/224 (39%), Gaps = 10/224 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D + +G + + + + ++ L + Sbjct: 6 ILLIEDEESLASFIQPELELEGYEVVWAKDGKEGLEFFEKEKPTLILLDWML--PVYDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R IR S +P+I ++ + D G+DD + KP E+ AR+ I RRL+ Sbjct: 64 TVLRRIRKVSDIPIIMLTARNQASDISNALDQGLDDYMTKPFEIEELFARIRVILRRLER 123 Query: 122 SNNRA-----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 R E +++ +GE L +E +L LM + K ++ ++ Sbjct: 124 EKRRVVSSTLEFSVLKIDLVSHKFWCKGEEIYLTPKEYALLCELMNDPEKVKSRDELLDI 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G +D + N V+ +I LR KL + + + R GY + Sbjct: 184 VWG-YDFVGQTNTVDVYIRALRNKLGKY--RNLIKTVRGYGYCL 224 >gi|290770180|gb|ADD61939.1| putative protein [uncultured organism] Length = 230 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 40/228 (17%), Positives = 87/228 (38%), Gaps = 10/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD + + + + N+ + + ++ G Sbjct: 4 ILIIDDDRELCALIKRSVQAENIEADFCNTGKEGLQKLREQEYQLVVLDVM--MPGMDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL------ARVAAI 115 E IR + +P++ + + + +G DD + KP E++ R Sbjct: 62 ETLEEIRKENSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMEELIARIASLIRRYTR 121 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + + + +++ + R F LP +E +L Y ++GK + K QI+ Sbjct: 122 FNQQAGAIQKLNFDGLQIDLENRSVTTSNGTFELPPKEFDLLLYCAKHQGKILTKQQIYE 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 ++G + N + + IS+LRKKL N + + + +GY + Sbjct: 182 EVWGEEYFYDDSN-IMAIISRLRKKLEVNPSSPKYIQTVKGIGYRFNK 228 >gi|283832502|ref|ZP_06352243.1| DNA-binding response regulator BaeS [Citrobacter youngae ATCC 29220] gi|291072167|gb|EFE10276.1| DNA-binding response regulator BaeS [Citrobacter youngae ATCC 29220] Length = 240 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 46/224 (20%), Positives = 89/224 (39%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + I + + + D+ ++ L G L Sbjct: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDLVLPYVRQTPPDLILLDLML--PGTDGL 70 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 L R IR S+VP++ ++ L + G DD + KP RE++ARV + Sbjct: 71 TLCREIRRFSEVPIMMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + P+ V +G++ L E R+L+ L GK ++ Q+ + +Y Sbjct: 131 QRELQQMDADSPLIVDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190 Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + V + ++SHI LR+KL + + + +GY + Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 >gi|228933205|ref|ZP_04096061.1| Two-component response regulator vanR [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228826366|gb|EEM72143.1| Two-component response regulator vanR [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 242 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 40/229 (17%), Positives = 83/229 (36%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +G + + E + ++ ++ ++ + Sbjct: 16 ILIVDDDQDIVRFMNVNLMQEGFKVFSAYNGEEALEIINNNSIQIAILDIM--MPQMDGI 73 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARVA 113 EL R IR +P+I +S S + F +G DD + KP E Sbjct: 74 ELCRRIREKHSLPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 133 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 ++V + + + R + GE L + E IL + A + + +I Sbjct: 134 FNQNAVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYEILYLMAAAKNRVFTIEEI 193 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + +++ N V HI++LR K+ + + +GY I+ Sbjct: 194 YESVWKERAYE-SNNTVMVHITRLRNKIEENPKEPKFIQNVWGVGYKIE 241 >gi|166032214|ref|ZP_02235043.1| hypothetical protein DORFOR_01917 [Dorea formicigenerans ATCC 27755] gi|166027937|gb|EDR46694.1| hypothetical protein DORFOR_01917 [Dorea formicigenerans ATCC 27755] Length = 232 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 46/222 (20%), Positives = 86/222 (38%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G S L + S I L+ G Sbjct: 10 ILIVEDDTDINNLLYTALQKAGYETVQAFSGTEARMLFQMDKAGFSLILLDLMLPGISGE 69 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ IR P+I ++ L + SG DD + KP +E+LAR+ R ++ Sbjct: 70 EVLAQIRKQGNTPVIVLTAKDGLDEKIGLLTSGADDYITKPFEIQEVLARIQVQLRHMQQ 129 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEV---FPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + D EV+ + ++E ILE L+ + + +K +IF + Sbjct: 130 EPEHKSVSYKNLELDRERFEVRIAGVLLPKITKQEFAILELLLEHPKQVFSKEEIFEYAW 189 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 E ++ HIS +RKK++ + +D+ +GY + Sbjct: 190 DEH-YMGETKTLDVHISNIRKKIKAVTQEEYIDTVWGIGYRL 230 >gi|75759276|ref|ZP_00739375.1| Two-component response regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228903343|ref|ZP_04067474.1| Two-component response regulator [Bacillus thuringiensis IBL 4222] gi|228910680|ref|ZP_04074491.1| Two-component response regulator [Bacillus thuringiensis IBL 200] gi|74493225|gb|EAO56342.1| Two-component response regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228848948|gb|EEM93791.1| Two-component response regulator [Bacillus thuringiensis IBL 200] gi|228856304|gb|EEN00833.1| Two-component response regulator [Bacillus thuringiensis IBL 4222] Length = 242 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 43/230 (18%), Positives = 89/230 (38%), Gaps = 11/230 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ ++G + E + + ++ + Sbjct: 15 ILIVDDEKEIRKLITIYLKNEGYEVLQAGDGEEGLEIVKKRDVHLIVLDIM--MPKIDGI 72 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-------AA 114 + +R +++P+I +S + +G DD V KP + E++AR+ Sbjct: 73 HMCMKVREIAEMPIIMLSAKTQDMDKILGLTTGADDYVAKPFNPLELIARIKSQLRRYMK 132 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + N E G ++V R + E L RE +LE L+ N+G + QI+ Sbjct: 133 MSGTSVQDENEIEIGDMKVNIVTRQVIIANEEVKLTPREFEVLELLVRNQGMVLNAAQIY 192 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223 ++ +N V HI K+R+K+ + + +GY I+ + Sbjct: 193 ERVWKEQAFQ-SDNTVMVHIRKIREKIEAIPRKPRYIKTVWGVGYKIEKD 241 >gi|328914028|gb|AEB65624.1| two-component response regulator YxdJ [Bacillus amyloliquefaciens LL3] Length = 229 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 46/225 (20%), Positives = 87/225 (38%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++ G + + DV ++ L Sbjct: 4 IMIVEDSEDIRGLLRNYLEKYGYQTVAAADFTAVLDVFLQEKPDVVLLDINL--PSYDGY 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115 R IR HS P+I IS + ++G DD + KP + + R A Sbjct: 62 YWCRQIRQHSTSPIIFISARSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYG 121 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 K E +++F + + Q E L ++E ++LE L+ K + ++ Sbjct: 122 EYAAKQGEKVLEYAGVQLFVERFELRFQDEKSELSKKESKLLEVLLERGEKVTGRDRLME 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + D V++N + +I++LRKKLR ++S R +GY + Sbjct: 182 KTWDT-DIFVDDNTLNVYITRLRKKLRELNAPVSIESVRGVGYQL 225 >gi|322387460|ref|ZP_08061070.1| DNA-binding response regulator [Streptococcus infantis ATCC 700779] gi|321141989|gb|EFX37484.1| DNA-binding response regulator [Streptococcus infantis ATCC 700779] Length = 218 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 49/220 (22%), Positives = 100/220 (45%), Gaps = 6/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++++G D G S+ + + ++ L Sbjct: 3 ILIVEDEDMIREGISDYLTDCGYETIQAADGLEALKQFSNHQVALVLLDI--QMPKLNGL 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ IR SQVP++ ++ + + + F + D + KP + RV AI++R Sbjct: 61 EVLSEIRKSSQVPVLMLTAFQDEEYKMSAFAALADGYLEKPFSLSLLKVRVDAIFKRYYD 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + +V D +V G+ + +E IL+YL+ N G+ + ++QI A++ + Sbjct: 121 TGRIFTYRDTQVDFDSYSAKVAGQEVAVNAKELEILDYLVKNEGRALTRSQIIDAVWKMT 180 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 DE + V++ +I +LRKKL D + + R +GY ++ Sbjct: 181 DEVPFDRVIDVYIKELRKKLDL----DCILTVRNVGYKLE 216 >gi|228967929|ref|ZP_04128940.1| Two-component response regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|228791796|gb|EEM39387.1| Two-component response regulator [Bacillus thuringiensis serovar sotto str. T04001] Length = 229 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 52/229 (22%), Positives = 91/229 (39%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++++ F + + + + D+ ++ L Sbjct: 5 ILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIML--PELDGW 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR-------EILARVAA 114 + R IR S+VP+I ++ TL F+ G DD V KP +L A Sbjct: 63 SVCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKA 122 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + L+ ++ I+V R V L E IL Y M N+G + + Q+ Sbjct: 123 SKKPLENEDDTLSIHGIQVHFPSRTVTVDEADVSLTHTEFEILVYFMKNQGIVLTREQLI 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 S I+G ++ A ++ V SHI LR KL K + + GY + N Sbjct: 183 SRIWG-YEFAGDDRTVNSHIRNLRNKLGEK--AKYITTVVRTGYKFEGN 228 >gi|89097672|ref|ZP_01170560.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911] gi|89087531|gb|EAR66644.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911] Length = 235 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 37/226 (16%), Positives = 88/226 (38%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++ + + + L + ++ L Sbjct: 6 ILVVEDELPIRKLILFNLERSNFEVLEAGDGKTALQLAEDKNPSLVVLDVML--PDMDGF 63 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ +R H +P+I +S + + G DD + KP + E+ AR+ ++ RR Sbjct: 64 EICARLRERHPDLPIIILSARGQDMDKIMGLEIGADDYIVKPFNPLELAARIRSVLRRTS 123 Query: 121 VSNNRAET-----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + GP + + G + L RE +++++ + R + V + ++ Sbjct: 124 RNTSPVRPAALELGPYLLEVKTQRLYKSGRLVKLTAREFQLMKFFLQKRNEPVTRDELLD 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++GL + + V+ HI +LR+K+ + + + GY Sbjct: 184 EVWGL-NYFGDPKTVDVHIRRLREKIEDEPSSPLFLKTVWGYGYCF 228 >gi|116490235|ref|YP_809779.1| DNA-binding response regulator [Oenococcus oeni PSU-1] gi|118586491|ref|ZP_01543935.1| two-component response regulator [Oenococcus oeni ATCC BAA-1163] gi|290889617|ref|ZP_06552707.1| hypothetical protein AWRIB429_0097 [Oenococcus oeni AWRIB429] gi|116090960|gb|ABJ56114.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Oenococcus oeni PSU-1] gi|118433055|gb|EAV39777.1| two-component response regulator [Oenococcus oeni ATCC BAA-1163] gi|290480815|gb|EFD89449.1| hypothetical protein AWRIB429_0097 [Oenococcus oeni AWRIB429] Length = 230 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 41/229 (17%), Positives = 91/229 (39%), Gaps = 9/229 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + ++G S E ++ D++ + ++ G Sbjct: 4 ILVVDDDKEIAELLEIYIRNEGNEPVLAYSGEEALSRLNTN-PDIALMILDVMMPGMNGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + +R + +P++ +S + +G DD V KP + E++ARV ++ RR Sbjct: 63 DVVKAVRKDTNIPILIVSAKTGDMDKIQGLITGADDYVTKPFNPLEVMARVRSLLRRSSN 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF------PLPRRERRILEYLMANRGKRVAKTQIFS 175 I + + + L E IL L ++ + + +IF Sbjct: 123 EVKDEIPEVIDAGALTINKDSHEVKTSDGEIVQLTALEFGILYLLASHPNRVFSADEIFE 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223 ++ + V V H+S LR K++ G + + + +GY ++ N Sbjct: 183 RVW-QTESVVSAKTVMVHVSHLRDKIKEATNGDEVIQTVWGVGYKVEIN 230 >gi|296129072|ref|YP_003636322.1| two component transcriptional regulator, winged helix family [Cellulomonas flavigena DSM 20109] gi|296020887|gb|ADG74123.1| two component transcriptional regulator, winged helix family [Cellulomonas flavigena DSM 20109] Length = 256 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 45/231 (19%), Positives = 91/231 (39%), Gaps = 19/231 (8%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + + +G ++E + + DV ++ L G LE Sbjct: 20 LVVEDEPAIAQAIVHRLTAEGWTVEAVGDGHAGVAAAARLQPDVVVLDVML--PGIDGLE 77 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------------LA 110 + R I+A VP++ ++ L G DD + KP RE+ A Sbjct: 78 VCRQIQAERPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELVARTKVLLRRTERA 137 Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 AA ++ + G + + S R + G L E +L L ++ + + Sbjct: 138 ARAAERATVQQPDPPLVVGDVTIDSAQRRVQRAGTEVHLTPTEFDLLLTLASSPRTVLTR 197 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ + ++ D + V+SH+ LR+KL G D + + +GY+ + Sbjct: 198 ERLLADVWDWVDASG-TRTVDSHVKALRRKL----GPDLIRTVHGVGYAYE 243 >gi|152994457|ref|YP_001339292.1| two component transcriptional regulator [Marinomonas sp. MWYL1] gi|150835381|gb|ABR69357.1| two component transcriptional regulator, winged helix family [Marinomonas sp. MWYL1] Length = 229 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 99/224 (44%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D + + + G ++ + + + + ++ L G V Sbjct: 3 ILVVEDDIVTQGFIKKGLTEQGYQVDVASDGQDALFQALEGDYQLIILDRMLPKLDGMTV 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L R A +P++ +S S+ + G DD + KP E+LARV + RR Sbjct: 63 LNTLRS--AQKTLPVLILSALDSVDERVKGLREGGDDYLVKPFAFAELLARVEILIRRQP 120 Query: 121 VSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 ++ + + +++ R G L +E +IL YLM + + V +T +F A Sbjct: 121 MAAVQQSTLLQVSDLKMDLLTRQVWRAGREISLQPKEFQILRYLMEHPKQVVTRTLLFEA 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +D + NV++ H+++LRKK+ +++ R +GY + Sbjct: 181 VWD-YDFDPQTNVIDVHVARLRKKVETDDLPPILETIRGVGYRL 223 >gi|294638191|ref|ZP_06716446.1| DNA-binding response regulator VicR [Edwardsiella tarda ATCC 23685] gi|291088686|gb|EFE21247.1| DNA-binding response regulator VicR [Edwardsiella tarda ATCC 23685] Length = 237 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 48/228 (21%), Positives = 90/228 (39%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D L+ + D G + + L D ++ L G L Sbjct: 6 ILVVEDDTLIAELLTLHLSDAGYHVTHAAEGDRGMALIEQGGWDALILDLML--PGVDGL 63 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ R +RA P+I IS S + + G DD + KP E++ARV A++RR + Sbjct: 64 DICRRVRAMTRYTPIIIISARSSEPHRVLGLELGADDYLAKPFSMVELVARVKALFRRQE 123 Query: 121 VSNNRAE-------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 G + + R V L RE +L + + G+ ++ Q+ Sbjct: 124 AMGRNLMLEAGRLTHGALTLDPIARQAWVAERAIELTPREFDLLYFFARHPGQVFSRLQL 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 ++G + E+ V +HI++LR K+ + + + GY Sbjct: 184 LDKVWG-YQHDGYEHTVNTHINRLRTKIEDDPAEPVWILTVWGAGYKF 230 >gi|254442621|ref|ZP_05056097.1| response regulator receiver domain protein [Verrucomicrobiae bacterium DG1235] gi|198256929|gb|EDY81237.1| response regulator receiver domain protein [Verrucomicrobiae bacterium DG1235] Length = 239 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 57/220 (25%), Positives = 101/220 (45%), Gaps = 5/220 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L++D + D + + G +E E +S DV ++ L G L Sbjct: 20 LLVEDEKKISDFVVRGLKEQGYVVELAEDGEDGYIHATSQSYDVIVLDIML--PGRDGLS 77 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120 + + +R P+I ++ L L+ + G DD + KP + E++AR+ A R Sbjct: 78 ILKSLRKSGNTVPVILVTARGELDERLEGLNLGADDYLTKPFYLDELIARIQALHRRSSG 137 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 S + + G + V R+ GE+ L RE +LEYLM + G+ + +TQI ++G Sbjct: 138 KSLSMMQVGDLVVNLSTREVRRDGELVELTTREFNLLEYLMRSPGRVLTRTQILEHVWG- 196 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D NVV+ + +LRKK+ +++ R GY + Sbjct: 197 YDFDPSTNVVDVCVQRLRKKVDAGHDVHLIETVRGAGYRM 236 >gi|159896979|ref|YP_001543226.1| two component transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159890018|gb|ABX03098.1| two component transcriptional regulator, winged helix family [Herpetosiphon aurantiacus ATCC 23779] Length = 229 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 48/225 (21%), Positives = 87/225 (38%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEE-WLQSSAREDVSAIEAFLIGKGEKV 60 +++DD + G L G + SL LQ+ + ++ L Sbjct: 4 ILIVDDDPAILSGVSTLLEQAGYEIAQAASLAQARSHLQAFNPPSLVILDLML--PDGDG 61 Query: 61 LELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 EL R IR Q P++ +S LQ ++ G DD + KP E++ARV AI R Sbjct: 62 FELCRQIRQGGQYLPILMLSARDELQDRVEGLTVGADDYLTKPFAPAELVARVRAILRLA 121 Query: 120 KVSNNRAETGPI---RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + R + + ++ L +E +L LM + + Sbjct: 122 QHQRETIGSFECGKLRFDCELQRAWWDEQLLELTPKESGVLLQLMRQPSHVWGRLALLQT 181 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++G + + +V+ + +LR K+ DP+ + R GY + Sbjct: 182 VWGT-NFLGDSRIVDVCVQRLRAKINQLDANADPIQTVRGFGYRL 225 >gi|77411963|ref|ZP_00788293.1| phosphate regulon response regulator PhoB [Streptococcus agalactiae CJB111] gi|77161989|gb|EAO72970.1| phosphate regulon response regulator PhoB [Streptococcus agalactiae CJB111] gi|319745956|gb|EFV98239.1| phosphate regulon response regulator [Streptococcus agalactiae ATCC 13813] Length = 225 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 47/225 (20%), Positives = 86/225 (38%), Gaps = 6/225 (2%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEK 59 M ++D A +++ + G + +GF+S E D+ ++ L G G Sbjct: 1 MIYCVEDDADIREMMLYTLQMAGFTAQGFSSSELFWEAIQEKVPDLILLDIMLPGDDGLT 60 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYR 117 +LE R +P+I + S + D G DD + KP E+++R+ A Sbjct: 61 ILERLRRKHQTEMIPVIMTTAKGSEYDKVKGLDLGADDYLVKPFGMMEMISRIKAVLRRS 120 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 R S G + + + E L +E +L N + + ++ + Sbjct: 121 RQVDSKAHIIIGNLEIDPTNYWVKRGTEKIHLTLKEFELLVLFFRNPNRVFTRQELLDKV 180 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +G E V+ HI LR KL + + R +GY ++ Sbjct: 181 WGE-QFLGETRTVDVHIGTLRTKLGEDGY--LIATVRGVGYRLEE 222 >gi|295425531|ref|ZP_06818222.1| response regulator [Lactobacillus amylolyticus DSM 11664] gi|295064784|gb|EFG55701.1| response regulator [Lactobacillus amylolyticus DSM 11664] Length = 265 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 45/229 (19%), Positives = 91/229 (39%), Gaps = 15/229 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G ++ E D+ ++ L + L Sbjct: 32 ILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVQKVEEYDPDLMILDLML--PKKDGL 89 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R +P+I ++ + + + G DD V KP +RE++ARV A RR + Sbjct: 90 EVAREVRQTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRDI 149 Query: 122 SNNRAETGPIRVFSD-----------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + E G+ L RE +L YL + G+ + + Sbjct: 150 VKKAEAATQEEADKNIKIGNLVIMPDAYIVENNGKKIELTHREFELLYYLAQHMGQVMTR 209 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGY 218 + ++G +D + V+ + +LR+K+ + + ++R +GY Sbjct: 210 EHLLQTVWG-YDYFGDVRTVDVTVHRLREKIEDNPIQPQILITRRGVGY 257 >gi|229824732|ref|ZP_04450801.1| hypothetical protein GCWU000182_00080 [Abiotrophia defectiva ATCC 49176] gi|229791061|gb|EEP27175.1| hypothetical protein GCWU000182_00080 [Abiotrophia defectiva ATCC 49176] Length = 230 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 30/222 (13%), Positives = 85/222 (38%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + DG + ++ + ++ D+ ++ L Sbjct: 4 ILIVEDDSFLNKMLAYNLTADGYEVTSALNVRTATEILNAHEFDLVLLDVNL--PDGNGY 61 Query: 62 ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH---REILARVAAIYR 117 +L R+I +I ++ + ++ G D + KP + + + + Sbjct: 62 DLCRLIKPEQPDTIVIFLTANDQESDQIRGYEVGAVDYITKPFVIGALQRKIKAMFTMLE 121 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 K + + + G + + + + G+ L E ++L N + + + Q+ + Sbjct: 122 HHKPAKDIYDDGRLFLDFSEQAATLNGKPLALSPMEYKMLNLFRKNPKQVLTRQQLLEKL 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 + + V+E+ + + IS++R K+ G + + +GY Sbjct: 182 WDAEERFVDEHTLTTSISRIRSKIETDGGAPYIKTIYGMGYQ 223 >gi|225174725|ref|ZP_03728723.1| two component transcriptional regulator, winged helix family [Dethiobacter alkaliphilus AHT 1] gi|225169852|gb|EEG78648.1| two component transcriptional regulator, winged helix family [Dethiobacter alkaliphilus AHT 1] Length = 236 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 47/222 (21%), Positives = 94/222 (42%), Gaps = 8/222 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD +V + +G + + + + DV ++ L G+ L Sbjct: 8 LVVDDDHIVLELVKLYGEREGFEVIVVSDGDQVLPIYDRENPDVVILDIML--PGKDGLT 65 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYRR 118 L R +R +P+I ++ + + G DD ++KP R I A + Sbjct: 66 LCRSLREIRMIPIIMLTAKGEEADRVLGLEMGADDYISKPFSPRELVARIKAVLRRTQAV 125 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 V+N + + + + +D R V E L RE +L +L N + + ++ +A++ Sbjct: 126 EGVTNWKLKYNGLEIHADIRRVLVDREHIELTPREFDLLYHLAKNPQRVFTRDELLAAVW 185 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G +D ++ V+ HI +LR KL L + + + +GY Sbjct: 186 G-YDYFGDQRTVDVHIRRLRTKL-VSLQHEYLSTVWGVGYQF 225 >gi|153814388|ref|ZP_01967056.1| hypothetical protein RUMTOR_00598 [Ruminococcus torques ATCC 27756] gi|145848784|gb|EDK25702.1| hypothetical protein RUMTOR_00598 [Ruminococcus torques ATCC 27756] Length = 234 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 44/224 (19%), Positives = 87/224 (38%), Gaps = 9/224 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + +G S + R V ++ L G E Sbjct: 12 LIVEDDVNINGLLKEALEKEGYICTQAFSGTEARMILQGERYSVILLDLML--PGIPGEE 69 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR P+I ++ ++ ++F G DD V KP +E+ ARV RR + + Sbjct: 70 VLRDIRKKGNTPVIILTAKDTIDDKVEFLRGGADDYVTKPFDIKEVTARVEVQIRRAETT 129 Query: 123 NNRAETGPIRVFSDGRDPEVQGEV------FPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + E + + ++E ILE L+ + K +K ++F Sbjct: 130 GRKEEEHRFTYQELELNKGDFTVKVGNTELPHITKQEFSILELLLKHPKKVFSKEEMFEY 189 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + E ++ HIS +RKK++ + +++ +GY + Sbjct: 190 AW-EEQYMGETKTLDVHISNIRKKIKAVTDKEYIETVWGIGYRL 232 >gi|15602297|ref|NP_245369.1| PhoB [Pasteurella multocida subsp. multocida str. Pm70] gi|12720685|gb|AAK02516.1| PhoB [Pasteurella multocida subsp. multocida str. Pm70] Length = 231 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 41/221 (18%), Positives = 88/221 (39%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++++D + +++ G + + + + ++ L G G + Sbjct: 4 ILVVEDESAIREMISLFLTQQGYDIIEAADYQSAVKKL-VEKPQLILLDWMLPGRSGIQF 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-HHREILARVAAIYRRL 119 ++ + +P+I ++ + + ++G DD + KP + A + R Sbjct: 63 IQFLKKHEDTENIPVIMLTARSEEEDCITGLNTGADDYITKPFSPKILLARIEAMLRRVY 122 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + S N E + + + Q V L E ++L++LM + K + Q+ I+G Sbjct: 123 EQSQNSIEIDGLLLDQNALRVSYQKNVINLSSTEFKLLKFLMTHPEKVYTREQLLDCIWG 182 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D VE+ V+S+I +LRK L + + R GY Sbjct: 183 N-DIYVEDRTVDSYIRRLRKSLEQYGFDRYIQTVRGAGYRF 222 >gi|307293762|ref|ZP_07573606.1| two component transcriptional regulator, winged helix family [Sphingobium chlorophenolicum L-1] gi|306879913|gb|EFN11130.1| two component transcriptional regulator, winged helix family [Sphingobium chlorophenolicum L-1] Length = 239 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 45/229 (19%), Positives = 90/229 (39%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L+DD +++ G +G + + ++ D+ ++ GE L Sbjct: 7 LLLVDDERSIREPLAQYLGRNGFRVTAVENAAEARMRLNANAIDLVILDIM--MPGEDGL 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R IR S++P+I ++ + + G DD V KP RE++AR+ I+RR+ Sbjct: 65 SLCRHIRETSEIPVILLTAKSEETDRIVGLEMGADDYVLKPFSPRELVARIKVIFRRVAT 124 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF---------PLPRRERRILEYLMANRGKRVAKTQ 172 R ++ E PL E ++ + +++ Q Sbjct: 125 GGQRVTAPDGATYAFANWLLKTQERTLVDSEGVALPLSTAEYNLMLAFATRPNQVLSRDQ 184 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + G A + +++ IS+LRKK+ + + + GY++ Sbjct: 185 LLDITQGREANAFD-RAIDNQISRLRKKIEPDPKNPTLIKTVWGGGYTL 232 >gi|304408471|ref|ZP_07390115.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] gi|304342556|gb|EFM08406.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] Length = 229 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 44/222 (19%), Positives = 95/222 (42%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ +G +E + + D+ ++ Sbjct: 4 LLVVDDDGAIRKLVRHFMETEGYIVEEAVDGLDAIRKLETFKADLVILDVM--MPNMDGY 61 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L + +R + +PL+ ++ + FD G DD V KP E++ARV A+ +R + Sbjct: 62 RLCQELRDYYADMPLLMLTAKGETSQKIKGFDLGTDDYVVKPFIPEELVARVKALLKRYR 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVF-PLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++ + + + + G+ LP +E +L L + G+ + + Q+ AI+G Sbjct: 122 IAVSSSVQIGAVTLNRRTFETLMGDASLSLPPKEFELLFKLASYPGQTLLREQLIEAIWG 181 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + D E ++ HI++LR++ + + R LGY ++ Sbjct: 182 I-DFEGNERTLDVHINRLRERFPEAEAGFRIATVRGLGYRME 222 >gi|302338212|ref|YP_003803418.1| two component transcriptional regulator, winged helix family [Spirochaeta smaragdinae DSM 11293] gi|301635397|gb|ADK80824.1| two component transcriptional regulator, winged helix family [Spirochaeta smaragdinae DSM 11293] Length = 232 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 48/228 (21%), Positives = 93/228 (40%), Gaps = 14/228 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + +G S+ + E ++ + D+ ++ L G + Sbjct: 6 ILVVDDEHDILELLKYNLEREGYSVITVETGEAAAATAAAKQPDLIILDLML--PGIDGV 63 Query: 62 ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILA------RV 112 E+ + IR +P+I ++ + + G DD + KP + ++A R Sbjct: 64 EVCKRIRSREEVKDIPIIMLTAKSEDSDVISGLEVGADDYMTKPFSPKVLVARIRALLRR 123 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + I + + + + L E ILE+L N G +++Q Sbjct: 124 KQLKEFPPREEPVITIHDIVIDTIRHEVKCSDVSLDLSVTEFSILEFLARNPGWVFSRSQ 183 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I A+ G D V E V+ I LRKKL++K D +++ R +GY + Sbjct: 184 IIGAVKGE-DYPVTERSVDVQILGLRKKLKDKG--DYIETVRGVGYRM 228 >gi|255535917|ref|YP_003096288.1| Phosphate regulon transcriptional regulatory protein phoB [Flavobacteriaceae bacterium 3519-10] gi|255342113|gb|ACU08226.1| Phosphate regulon transcriptional regulatory protein phoB [Flavobacteriaceae bacterium 3519-10] Length = 227 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 42/223 (18%), Positives = 90/223 (40%), Gaps = 9/223 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +LIDD + + +G + + D+ ++ + G + Sbjct: 8 ILLIDDEQDILEILSYNLQKEGYEVHTAQNGNEGIQKAKEIVPDLILLDVMMPEKDGIET 67 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117 + R + + ++ +S + L F +G +D + K I + ++++V + Sbjct: 68 CQDLRKLPDLQKTLIVFLSARSEEFSQLAGFQAGANDYIVKIIKPKVLISKVNALLQLTS 127 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + S G + + D G+ F LP++E +L L +N K + +I + Sbjct: 128 NVYDSKKTITAGDLVIDKDNFRVSKSGQQFLLPKKEFDLLYLLASNTNKVFKREEILEKV 187 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G D V E ++ HI +LR+KL G + + + +GY + Sbjct: 188 WGN-DVIVGERTIDVHIRRLREKL----GIGTIQTLKGIGYKL 225 >gi|229100005|ref|ZP_04230925.1| Two-component response regulator [Bacillus cereus Rock3-29] gi|229119605|ref|ZP_04248884.1| Two-component response regulator [Bacillus cereus Rock1-3] gi|228663848|gb|EEL19410.1| Two-component response regulator [Bacillus cereus Rock1-3] gi|228683433|gb|EEL37391.1| Two-component response regulator [Bacillus cereus Rock3-29] Length = 228 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 45/227 (19%), Positives = 86/227 (37%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ ++G+ + L D+ ++ + Sbjct: 5 ILIVDDDKDIRNLISVYLENEGLQTQKAEDAIEALKLLEEKEFDLILLDVM--MPNMDGI 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-------REILARVAA 114 E IR +P+I +S + SG DD ++KP + + L R Sbjct: 63 EACLKIREEQTIPIIMLSAKSEDMDKIQGLTSGADDYLSKPFNPLELIARVKSQLRRHKK 122 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + N E + + SD R V+ + L +E ILE L N+G ++ +I+ Sbjct: 123 YNTDTNKNKNTIEMVGLTINSDTRQVWVKNQEVRLTPKEFDILELLARNKGMVLSVEKIY 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220 A++ N V HI+K+R K+ + + +GY I Sbjct: 183 EAVW-KEQFYKSNNNVMVHITKIRDKIEEDSKHPIYIKTVWGVGYKI 228 >gi|206579530|ref|YP_002239491.1| DNA-binding response regulator [Klebsiella pneumoniae 342] gi|288936339|ref|YP_003440398.1| two component transcriptional regulator, winged helix family [Klebsiella variicola At-22] gi|206568588|gb|ACI10364.1| DNA-binding response regulator [Klebsiella pneumoniae 342] gi|288891048|gb|ADC59366.1| two component transcriptional regulator, winged helix family [Klebsiella variicola At-22] Length = 238 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 47/228 (20%), Positives = 91/228 (39%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + D+G + + D ++ L G L Sbjct: 5 ILLVEDDEDIATLLRLNLQDEGYQIVHEADGDQALVQLEKQVWDAVILDLML--PGVDGL 62 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARVA 113 E+ R IR ++ P+I IS S + + G DD + KP + + R Sbjct: 63 EICRRIRQMTRYLPVIIISARTSEMHRVLGLEMGADDYLAKPFSLLELIARVKALFRRQE 122 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 A+ + L + R + + R+ +++GEV L RE +L Y + G+ ++ + Sbjct: 123 AMGQNLLMDAGRLSCHGLSIDPLSREVKLRGEVVDLTPREFDLLYYFARHPGEVFSRLAL 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++G + E+ V +HI++LR K+ + D + + GY Sbjct: 183 LEQVWG-YQHEGYEHTVNTHINRLRSKIERDPAEPDIILTVWGKGYKF 229 >gi|73661850|ref|YP_300631.1| response regulator [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|123643287|sp|Q49ZT8|HSSR_STAS1 RecName: Full=Heme response regulator hssR gi|72494365|dbj|BAE17686.1| response regulator [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 224 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 46/220 (20%), Positives = 97/220 (44%), Gaps = 4/220 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + + +S E + + D++ ++ + E Sbjct: 5 LIVDDDPKILEYVSKYIEREHFETIVQSSAENALSYLETHQVDIAIVDVMMG--KMSGFE 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L +I++ +P+I ++ +L + +G DD V KP +E++ R+ A+ +R V+ Sbjct: 63 LCKILKEDFDIPVIMLTARDALSDKEQAYLTGTDDYVTKPFEVKELMFRIKAVLKRYNVN 122 Query: 123 NNRAETGPIRVFSDGR-DPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 N + + + + + LP +E ++L L +N + + + I+G F Sbjct: 123 INNEVSIGNLTLNQSYLEIQSSSKSMNLPNKEFQLLFLLASNPRQVFNRDALIEKIWG-F 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D +E V+ HI +LRK+L + + R LGY +D Sbjct: 182 DYEGDERTVDVHIKRLRKRLEKIDASVTIHTVRGLGYKVD 221 >gi|150018594|ref|YP_001310848.1| two component transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149905059|gb|ABR35892.1| two component transcriptional regulator, winged helix family [Clostridium beijerinckii NCIMB 8052] Length = 232 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 38/229 (16%), Positives = 84/229 (36%), Gaps = 11/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ ++ + + D+ ++ + Sbjct: 7 ILVVDDEKDIREVIEIYLINEEFEVITACDGLEALEKLKNEAIDLIILDIM--MPKLDGI 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-------REILARVAA 114 IR ++P+I +S + + G DD V KP + + + R + Sbjct: 65 RTCLKIREEKKMPIIMLSAKSEDSDKILGLNIGADDYVVKPFNPLELVARVKSQIRRTTS 124 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + +++ + + + R+ V + L RE IL+ L N G+ ++ QI+ Sbjct: 125 FNEPREENDDEICIDGLVINTANREVFVDDKFVRLTPREFEILKVLATNIGRVLSTEQIY 184 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 ++ +N V HI +R+K+ N + +GY ID Sbjct: 185 ENVWDEP-FFNSDNTVAVHIRNIREKIEINPKEPKYIKLVWGVGYKIDK 232 >gi|294084770|ref|YP_003551528.1| winged helix family two component transcriptional regulator [Candidatus Puniceispirillum marinum IMCC1322] gi|292664343|gb|ADE39444.1| two component transcriptional regulator, winged helix family [Candidatus Puniceispirillum marinum IMCC1322] Length = 235 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 46/227 (20%), Positives = 92/227 (40%), Gaps = 9/227 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++ DD + G ++ + + D+ ++ + G +V Sbjct: 6 ILIADDEPNQLELLSFNLRQAGFTVFEAADGRQAVNMVEDLQPDLIILDWMMPHMSGIEV 65 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118 L R +P+I +S D+G DD + KP RE+++RV A R Sbjct: 66 CRLFRSRTETKDLPVIILSARGEEGDRTLGLDTGADDYITKPFSPRELVSRVKALLRRAR 125 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++++ E +++F + G+ PL +E ++L L G+ ++ + ++ Sbjct: 126 PALASDMMEFEDLQIFPSRMEVRRAGKTVPLGPKEYQLLLTLFERPGQVFSRPLLLDRVW 185 Query: 179 GLFDEAVEENVVESHISKLRKKL-----RNKLGFDPVDSKRFLGYSI 220 G VEE V+ H S+LRK + N + + + R GY++ Sbjct: 186 G-HGVFVEERTVDVHFSRLRKAINGAASDNDKRPNLIRTVRGGGYAL 231 >gi|257871361|ref|ZP_05651014.1| transcriptional regulator [Enterococcus gallinarum EG2] gi|257805525|gb|EEV34347.1| transcriptional regulator [Enterococcus gallinarum EG2] Length = 229 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 43/227 (18%), Positives = 88/227 (38%), Gaps = 9/227 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD + + ++G + + D+ + ++ + Sbjct: 3 ILVADDDKEIVELLSIYLHNEGYEAVKAYDGKEALTKIRTT-PDIELLILDIMMPEMDGM 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + +R SQ+P+I ++ + + +G DD V KP + E++ARV ++ RR K+ Sbjct: 62 QVVKELRKESQIPIIMLTAKTTDMDKIRGLVAGADDYVTKPFNPLEVMARVKSLLRRTKM 121 Query: 122 SNNRAETGP------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + I + G L E IL L ++ + + +IF Sbjct: 122 QAPSNQPDILEVSSLIINRDSHEVKTITGNEIQLTALEFGILYLLASHPNRVFSADEIFE 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 ++ + V V H+S LR K+ G + + +GY ID Sbjct: 182 RVW-KQESVVSAKTVMVHVSHLRDKIEEATDGEKVIQTVWGVGYKID 227 >gi|228936126|ref|ZP_04098931.1| Two-component response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228823536|gb|EEM69363.1| Two-component response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 229 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 51/229 (22%), Positives = 89/229 (38%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++++ F + + + + D+ ++ L Sbjct: 5 ILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIML--PELDGW 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR-------EILARVAA 114 + R IR S+VP+I ++ TL F+ G DD V KP +L Sbjct: 63 SVCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKV 122 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + L+ ++ I V R V L E IL Y M N+G + + Q+ Sbjct: 123 TKQLLENEDDTLSIHGIHVHFPSRTVTVNKTDINLTHTEFEILAYFMRNQGIVLTREQLI 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 S I+G ++ A ++ V SHI LR KL K + + GY + N Sbjct: 183 SRIWG-YEFAGDDRTVNSHIRNLRNKLGEK--AKYITTVVRTGYKFEGN 228 >gi|229124382|ref|ZP_04253570.1| Two-component response regulator [Bacillus cereus 95/8201] gi|228659034|gb|EEL14686.1| Two-component response regulator [Bacillus cereus 95/8201] Length = 229 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 51/229 (22%), Positives = 88/229 (38%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++++ F + + + + D+ ++ L Sbjct: 5 ILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIML--PELDGW 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR-------EILARVAA 114 + R IR S+VP+I ++ TL F+ G DD V KP +L Sbjct: 63 SVCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKV 122 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + L+ + I V R V L E IL Y M N+G + + Q+ Sbjct: 123 TKQLLENEEDILSIHGIHVHFPSRTVTVNKTDINLTHTEFEILAYFMKNQGIVLTREQLI 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 S I+G ++ A ++ V SHI LR KL K + + GY + N Sbjct: 183 SRIWG-YEFAGDDRTVNSHIRNLRNKLGEK--AKYITTVVRTGYKFEGN 228 >gi|260587734|ref|ZP_05853647.1| regulatory protein VanR [Blautia hansenii DSM 20583] gi|260541999|gb|EEX22568.1| regulatory protein VanR [Blautia hansenii DSM 20583] Length = 299 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 46/229 (20%), Positives = 84/229 (36%), Gaps = 10/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D ++ + F E D++ ++ L Sbjct: 73 ILIVDDETEIADLVELYLQNEDFLVYKFYDAEEAWNFMEKEELDLALLDIM--MPKISGL 130 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL + IR P+I ++ + + G DD + KP E++ARV A RR K Sbjct: 131 ELCKKIRERYNYPIIMLTAKGAEIDKIQGLTLGADDYITKPFQPLEVVARVKAQLRRYKR 190 Query: 122 SNNRA-------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N E + + + + + L E IL L +G V+ ++F Sbjct: 191 YNMGTVKAEEILEHKGLILNKKTHECFLNERLLSLTPTEFSILAILCEQKGNVVSAEELF 250 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 I+ + N + HI LR+K+ + + + GY I+ Sbjct: 251 HQIWKDEYYSKSNNTITVHIRHLREKMEDSFENPKYIKTVWGCGYKIEK 299 >gi|313632439|gb|EFR99462.1| response regulator SaeR [Listeria seeligeri FSL N1-067] Length = 229 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 44/224 (19%), Positives = 84/224 (37%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L+DD + D +G + N+ E L S D+ ++ Sbjct: 4 ILLVDDEETIVDVCRRYLEKEGFRVLTANNGEVALQLYKSEHVDLLVVDIM--MPKMDGH 61 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118 L I+ P + +S + L G DD ++KP RE++ RV + Sbjct: 62 TLVMEIQELEKDTPFLYLSALTQEKERLYGLTLGADDYMSKPFSPRELVLRVKNILRRTK 121 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + G + + R V E L +E +L L + + +K+++ ++ Sbjct: 122 RSSEPETLKHGSLFLDKSKRLVLVNQEELELTIKEFDLLWLLASENKRVFSKSELLERVW 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221 G ++ + N + HI LR+KL+ + + LGY + Sbjct: 182 G-YEYDGDANTINVHIHHLREKLQXXDEKVIFIKTVWGLGYKFE 224 >gi|229153018|ref|ZP_04281199.1| Two-component response regulator [Bacillus cereus m1550] gi|228630438|gb|EEK87086.1| Two-component response regulator [Bacillus cereus m1550] Length = 229 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 51/229 (22%), Positives = 89/229 (38%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++++ F + + + + D+ ++ L Sbjct: 5 ILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIML--PELDGW 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR-------EILARVAA 114 + R IR S+VP+I ++ TL F+ G DD V KP +L Sbjct: 63 SVCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKV 122 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + L+ ++ I V R V L E IL Y M N+G + + Q+ Sbjct: 123 TKQLLENEDDTLSIHGIHVHFPSRTVTVNRTDINLTHTEFEILAYFMKNQGIVLTREQLI 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 S I+G ++ A ++ V SHI LR KL K + + GY + N Sbjct: 183 SRIWG-YEFAGDDRTVNSHIRNLRNKLGEK--AKYITTVVRTGYKFEGN 228 >gi|145300860|ref|YP_001143701.1| OmpR family two-component response regulator [Aeromonas salmonicida subsp. salmonicida A449] gi|142853632|gb|ABO91953.1| two-component system response regulator, OmpR family [Aeromonas salmonicida subsp. salmonicida A449] Length = 240 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 46/229 (20%), Positives = 89/229 (38%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + ++D G+ + + + L D+ ++ GE L Sbjct: 8 ILVVDDHSEIRDLLKRFLEQHGLRVSCARDGKEMKRLLEEREFDLLVLDLM--MPGEDGL 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R +RA S +P+I ++ + + G DD + KP + RE+LAR+ A+ RR V Sbjct: 66 TLCRELRAKSCMPIIMLTAMGEETDRIIGLEMGADDYLAKPFNPRELLARIKAVMRRTNV 125 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF---------PLPRRERRILEYLMANRGKRVAKTQ 172 A R R L E +L + + +++ Q Sbjct: 126 EPQPAPETLTRDLRFDRWLLDINRRELVDEEGVGLSLSTAEFDLLRVFLERPQRVLSRDQ 185 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + G A + +++ +S+LR+KL + + + + GY Sbjct: 186 LLDLARGREAVAFD-RAIDTLVSRLRRKLERDPKNPELIKTIWGGGYLF 233 >gi|8100674|gb|AAF72358.1|AF192329_19 VanRB [Enterococcus faecalis] Length = 220 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 50/221 (22%), Positives = 91/221 (41%), Gaps = 7/221 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + + + G ++ + ++ L G Sbjct: 5 ILLVEDDDHICNTVRGFLAEAGYQVDACTDGNEAYTKFYENTYQLVILDIML--PGMNGH 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL R RA + P++ ++ + + FD+ DD V KP + +L RV A+ RR Sbjct: 63 ELLREFRAKNDTPILMMTALSDDENQIRAFDAEADDYVTKPFKMQILLKRVEALLRRSGA 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 G + + + G PL R+E IL L+ N+G+ + I S I+G + Sbjct: 123 LAKEIRVGRLTLLPEDFTVLCDGTELPLTRKEFEILLLLVQNKGRTLTHEIILSRIWG-Y 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 D + + V +HI LR KL + + + R +GY ++ Sbjct: 182 DFEGDGSTVHTHIKNLRAKLPE----NIIKTIRGVGYRLEE 218 >gi|21693597|gb|AAM75361.1|AF521648_1 PhoB [Pseudomonas syringae] Length = 230 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 49/224 (21%), Positives = 96/224 (42%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A +++ G ++ + + + D+ ++ L G G + Sbjct: 6 ILIVDDEAPIREMIAVALEMAGYDCLEADNAQDAHAIIVDRKPDLILLDWMLPG-GTSGI 64 Query: 62 ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IY 116 EL R ++ S +P+I ++ + + GVDD + KP RE++AR+ A Sbjct: 65 ELARRLKREELTSDIPIIMLTAKGEEDNKIQGLEVGVDDYITKPFSPRELVARLKAVLRR 124 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 S + E G + + + G + E R+L++ M ++ + + Q+ Sbjct: 125 AGPADSESPIEIGGLLLDPISHRVTIDGTPAEMGPTEYRLLQFFMTHQERAYTRGQLLDQ 184 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + VEE V+ HI +LRK L + V + R GY Sbjct: 185 VWG-GNVYVEERTVDVHIRRLRKALGEAYE-NMVQTVRGTGYRF 226 >gi|28211166|ref|NP_782110.1| transcriptional regulatory protein [Clostridium tetani E88] gi|28203606|gb|AAO36047.1| transcriptional regulatory protein [Clostridium tetani E88] Length = 231 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 39/229 (17%), Positives = 85/229 (37%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + ++ + D+ ++ L Sbjct: 4 ILIVEDDLSIAELQKDYLEISDFEVKICTDGVSGLNEIKENKYDLIILDVML--PKMDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ RII VP++ +S + G DD + KP E++ARV + + + Sbjct: 62 DILRIIHDTKDVPVLMVSAKKEEIDKIKGLSLGADDYITKPFSPGELVARVKSHIQNYER 121 Query: 122 SNNRAETGPIRV---------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 N+ D R + + L ++E +L ++ + K + Sbjct: 122 LKNKFSDKLNNNVISIRGLEINKDSRQVIINDKEVNLAQKEFDLLLHMAQYPNRVFGKDE 181 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 +F +I+GL D + V HI ++R+K+ N +++ +GY I Sbjct: 182 LFESIWGL-DSIGDSATVTVHIRRIREKIEFNPSKPQYIETVWGVGYRI 229 >gi|289643785|ref|ZP_06475893.1| two component transcriptional regulator, winged helix family [Frankia symbiont of Datisca glomerata] gi|289506391|gb|EFD27382.1| two component transcriptional regulator, winged helix family [Frankia symbiont of Datisca glomerata] Length = 242 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 48/222 (21%), Positives = 98/222 (44%), Gaps = 8/222 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + D + +G + +S + + + D+ ++ L Sbjct: 21 LVVDDEEAITDLVVMALRYEGFDVHAVHSGQAALTRVALSPPDLLVLDVML--PDIDGFM 78 Query: 63 LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L + +R + +P + ++ + + + G DD V KP E++ARV AI RR Sbjct: 79 LCQRLRGSGRGMPTLFLTARDATEDKVHGLTLGGDDYVTKPFAVSELVARVRAILRRAGA 138 Query: 122 SNNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 +++ + R+ G L E R+L YL+AN K + + Q+ ++ Sbjct: 139 ADSTPGPLRFSDLELDPETREVRRGGRHVELTATEYRLLHYLLANARKVLTRAQLLDHVW 198 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G D E V+E+++S LR+K+ + + + + R +GY + Sbjct: 199 G-HDFGGEARVLETYVSYLRRKI-DPVPPSLIHTVRGVGYVL 238 >gi|229014033|ref|ZP_04171157.1| Two-component response regulator [Bacillus mycoides DSM 2048] gi|228747289|gb|EEL97168.1| Two-component response regulator [Bacillus mycoides DSM 2048] Length = 242 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 44/230 (19%), Positives = 90/230 (39%), Gaps = 11/230 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ ++G + E + + ++ + Sbjct: 15 ILIVDDEKEIRKLIAIYLKNEGYEVLQAVDGEEGLEIVKKRDVHLIVLDIM--MPKIDGI 72 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + +R +++P+I +S + +G DD V KP + E++AR+ + RR Sbjct: 73 HMCMKVREIAEMPIIMLSAKTQDMDKILGLTTGADDYVAKPFNPLELIARIKSQLRRYMK 132 Query: 122 S-------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + E G I++ R + E L RE +LE L N+G + QI+ Sbjct: 133 MSGTSVKDESVFEVGDIKINIVTRQVIIANEEVKLTPREFEVLELLARNQGMVLNAAQIY 192 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223 ++ +N V HI K+R+K+ + + +GY I+ + Sbjct: 193 ERVWKEQAFQ-SDNTVMVHIRKIREKIEAIPRKPRYIKTVWGVGYKIEKD 241 >gi|310780298|ref|YP_003968630.1| two component transcriptional regulator, winged helix family [Ilyobacter polytropus DSM 2926] gi|309749621|gb|ADO84282.1| two component transcriptional regulator, winged helix family [Ilyobacter polytropus DSM 2926] Length = 220 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 47/223 (21%), Positives = 95/223 (42%), Gaps = 9/223 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D ++ G + E L D++ ++ + Sbjct: 4 ILLLEDEDKMRKVVKNFLVKAGYEVIEACDGEEALELFYENTFDLAILDVMV--PKIDGW 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119 + R IR S++P+I ++ + L FD G D+ + KP + +LARV + Sbjct: 62 TICRKIRKESKIPIIMLTARSTEDDELFGFDLGADEYITKPFSLKILLARVKVLLKRKDT 121 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 K N + G + + S E+ L +E +L ++ N+ +++ + + I+G Sbjct: 122 KTEENSLKVGKLEIDSSSHRVIFFDEILDLTPKEYDMLLMMVENKDIAISRERFLNQIWG 181 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 FD + V++H+ +LRKKL+ K + + R +GY + Sbjct: 182 -FDYYGDLRTVDTHVKQLRKKLKGK----HIKTVRGVGYRFEE 219 >gi|258515817|ref|YP_003192039.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] gi|257779522|gb|ACV63416.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] Length = 237 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 34/224 (15%), Positives = 84/224 (37%), Gaps = 9/224 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++ + + S + + R + ++ L G L Sbjct: 7 ILVVEDEDSIRQFITINLERNSFQVMEAVSGKEALTRSKTFRPHLMVLDIML--PGMDGL 64 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH----REILARVAAIY 116 E+ R +R + +I ++ + + G DD V KP + I A + + Sbjct: 65 EVCRRLRVESPGIAVIMLTARGQDIDKVMGLELGADDYVVKPFNPLELVARIRAVLRRMQ 124 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 ++ G R+ + + L RE +++ + N + +++ + + Sbjct: 125 TDRPDNSQIICQGLFRLDDRAQLICKNDQELDLTPREYCLMKIFLENSNRALSRDWLLNL 184 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYS 219 +G D + V+ HI +LR+K+ + +++ +GY Sbjct: 185 AWGE-DFVGDPKTVDVHIRRLREKIEDNPSKPVYIETVWGVGYR 227 >gi|239825747|ref|YP_002948371.1| two component transcriptional regulator, winged helix family [Geobacillus sp. WCH70] gi|239806040|gb|ACS23105.1| two component transcriptional regulator, winged helix family [Geobacillus sp. WCH70] Length = 232 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 45/225 (20%), Positives = 88/225 (39%), Gaps = 7/225 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++I+D A + + G S + E L S D ++ L E Sbjct: 8 LIIEDDANIVELIQLYMDKAGYSYISASDGEEGLELFYSESPDCIILDIML--PKLNGWE 65 Query: 63 LPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 + + I VP+I ++ + + G DD + KP E++ARV + RR Sbjct: 66 VCKTIRMEDRHVPIIMLTGKGETYDVIKGLNIGADDYIVKPFDPNELIARVKTVLRRTIL 125 Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + +R + I + + E + +E + YL N + + + Q+ ++ Sbjct: 126 SESEKDRLQFDNIIIHMKEYRVLINNEEVQMAPKEMELFYYLAMNPKQVLTRQQLLDRVW 185 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 G ++ + V+ HI ++R KL + + R +GY + N Sbjct: 186 G-YEFNGDPRTVDVHIKRIRDKLAEHKAKWSIVTIRGVGYRFEEN 229 >gi|182419810|ref|ZP_02951050.1| regulatory protein VanR [Clostridium butyricum 5521] gi|237666867|ref|ZP_04526852.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376358|gb|EDT73940.1| regulatory protein VanR [Clostridium butyricum 5521] gi|237658066|gb|EEP55621.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E BL5262] Length = 231 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 44/225 (19%), Positives = 93/225 (41%), Gaps = 8/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ +D ++D + ++ + + + + D+ ++ + Sbjct: 3 ILIAEDEKDIRDLISLHMKKENHNVFEASDGKEALDIFECEKIDLILVDIM--MPKINGI 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + +R S +P+I I+ S + G DD + KPI E+ ARV++ RR Sbjct: 61 AVIQKVRESSTIPIICITAMGSDSDKVLALGIGADDYLVKPISPIELCARVSSHLRRCYR 120 Query: 122 SNNRAETGPIRVF----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 E SD + + L +E +IL+ L++N G+ K QI+ + Sbjct: 121 YTENREDAYATGDLKIYSDTFEVYKGDKKIELNPKEFKILKLLISNAGRVFTKKQIYEQV 180 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 +G + N + H+S +R+K+ + + + R +GY I+ Sbjct: 181 WGEI-YIGDSNNIMVHLSHIREKIEDDPKNPVYIKTIRGIGYKIE 224 >gi|206969897|ref|ZP_03230851.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|228955094|ref|ZP_04117109.1| Two-component response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229048515|ref|ZP_04194077.1| Two-component response regulator [Bacillus cereus AH676] gi|229072320|ref|ZP_04205524.1| Two-component response regulator [Bacillus cereus F65185] gi|229082069|ref|ZP_04214555.1| Two-component response regulator [Bacillus cereus Rock4-2] gi|229112277|ref|ZP_04241816.1| Two-component response regulator [Bacillus cereus Rock1-15] gi|229181134|ref|ZP_04308466.1| Two-component response regulator [Bacillus cereus 172560W] gi|206735585|gb|EDZ52753.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|228602325|gb|EEK59814.1| Two-component response regulator [Bacillus cereus 172560W] gi|228671117|gb|EEL26422.1| Two-component response regulator [Bacillus cereus Rock1-15] gi|228701238|gb|EEL53738.1| Two-component response regulator [Bacillus cereus Rock4-2] gi|228710745|gb|EEL62716.1| Two-component response regulator [Bacillus cereus F65185] gi|228722831|gb|EEL74214.1| Two-component response regulator [Bacillus cereus AH676] gi|228804604|gb|EEM51208.1| Two-component response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 229 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 52/229 (22%), Positives = 90/229 (39%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++++ F + + + + D+ ++ L Sbjct: 5 ILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIML--PELDGW 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR-------EILARVAA 114 + R IR S+VP+I ++ TL F+ G DD V KP +L A Sbjct: 63 SVCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKA 122 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + L+ ++ I V R V L E IL Y M N+G + + Q+ Sbjct: 123 SKKPLENEDDTLSIHGIHVHFPSRTVTVDEADVSLTHTEFEILVYFMKNQGIVLTREQLI 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 S I+G ++ A ++ V SHI LR KL K + + GY + N Sbjct: 183 SRIWG-YEFAGDDRTVNSHIRNLRNKLGEK--AKYITTVVRTGYKFEGN 228 >gi|78224573|ref|YP_386320.1| two component transcriptional regulator [Geobacter metallireducens GS-15] gi|78195828|gb|ABB33595.1| two component transcriptional regulator, winged helix family [Geobacter metallireducens GS-15] Length = 224 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 44/221 (19%), Positives = 93/221 (42%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D V ++ +E + E + D+ ++ L + L Sbjct: 3 ILVVEDEKKVSSFIKRGLEEERYEVEAAFNGEDGLKMALEKGFDLIILDVML--PKKDGL 60 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R +R P++ ++ S++ + DSG DD + KP E+LARV A+ RR + Sbjct: 61 SVVRELRERKNATPVLMLTAKDSVEDIVAGLDSGSDDYLTKPFAFAELLARVRALVRRSE 120 Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 R+ + + L +E +LEY M N + + +T I ++ Sbjct: 121 QDRGAEIRFADLRLDPVTHKVWRKDKEIDLTAKEYSLLEYFMRNPNQVLTRTMIAEHVWD 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + N+++ +++ LRKK+ + + + R +GY + Sbjct: 181 -YTFDSFTNIIDVYVNYLRKKIDREADKKLIHTVRGVGYIL 220 >gi|81428113|ref|YP_395112.1| two-component response regulator transcriptional regulator [Lactobacillus sakei subsp. sakei 23K] gi|4104599|gb|AAD10261.1| putative response regulator [Lactobacillus sakei subsp. sakei 23K] gi|78609754|emb|CAI54800.1| Two-component system, response regulator (possibly involved in phosphate regulation) [Lactobacillus sakei subsp. sakei 23K] Length = 237 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 41/230 (17%), Positives = 85/230 (36%), Gaps = 13/230 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + + + D ++ L + Sbjct: 4 ILVVDDEPAILTLLRYNLEQEHFKVMTATDGAQALTMALQQKFDFIILDLML--PKLDGI 61 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + + IR + P++ ++ + + + G DD V KP REI+AR+ AI RR Sbjct: 62 AVTKKIREAKLKTPIMILTAKDNETDKIVGLEVGADDYVTKPFSPREIIARIRAIERRTT 121 Query: 121 VSNNRAETGPIRV--------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + L +E +L Y M K ++ + Sbjct: 122 QPIEQPVEQASETIVVGDLSVDETEVIAKKGDHKLHLTPKEFELLVYFMHRLNKVQSREK 181 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 + +A++G FD E +V+ +S LR+K+ + + + R GY ++ Sbjct: 182 LLNAVWG-FDYPAETRMVDIQVSHLREKIEDNPRHPVYLKTVRGFGYQLE 230 >gi|330963562|gb|EGH63822.1| DNA-binding response regulator BaeS [Pseudomonas syringae pv. actinidiae str. M302091] Length = 224 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 45/221 (20%), Positives = 85/221 (38%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + G S + ++ + ++ L G + Sbjct: 7 ILIVEDEPKLATLMRDYLIAAGYSTHCLANGLDVVPAVRASAPQLILLDIML--PGRDGM 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + +R+ S VP+I I+ L D G DD + KP RE + R Sbjct: 65 DICKELRSFSAVPIIMITARVEEIDRLLGLDLGADDYICKPFSPRE-MVARVKAILRRTS 123 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + ++V + G L E R+L + G+ ++ Q+ +Y Sbjct: 124 ATDPLAAKGLQVDEEHYQASFNGVALDLTPVELRLLATFARSPGRVFSRDQLLDRLYSDH 183 Query: 182 DEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221 V + V+SHI LR+KL G DP+ S +GY ++ Sbjct: 184 -RVVTDRTVDSHIRNLRRKLEQACPGQDPIQSLYGVGYKLE 223 >gi|251782003|ref|YP_002996305.1| two-component response regulator [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390632|dbj|BAH81091.1| two-component response regulator [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|323126825|gb|ADX24122.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 235 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 43/231 (18%), Positives = 84/231 (36%), Gaps = 15/231 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L+DD + G +G S + L + D ++ L + Sbjct: 5 ILLVDDEEHILRLLDYHLGKEGFSTQLVTDGRKALTLAETEPFDFILLDIML--PQLDGI 62 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILA 110 E+ + +RA P++ +S + + G DD + KP R + Sbjct: 63 EVCKRLRAKGIKTPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELLARVKAILRRTS 122 Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + ++ G + V+ D + + L +E +L YLM + + + Sbjct: 123 KEQQEDDTDDFRDDYRVFGALTVYPDRHEVYKADHLLSLTPKEFELLLYLMKHPNMTLTR 182 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++ I+G +D E +V+ HI KLR K+ + + + R GY Sbjct: 183 ERLLERIWG-YDFGQETRLVDVHIGKLRDKIEDNPKDPQFIQTIRGYGYKF 232 >gi|241765260|ref|ZP_04763241.1| two component transcriptional regulator, winged helix family [Acidovorax delafieldii 2AN] gi|241365051|gb|EER59943.1| two component transcriptional regulator, winged helix family [Acidovorax delafieldii 2AN] Length = 243 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 40/230 (17%), Positives = 84/230 (36%), Gaps = 14/230 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++D +G + + L D+ ++ GE L Sbjct: 11 ILVVDDDARIRDLLRRYLTQEGFEVMVAEDGKALNRLLLRETVDLIVLDLM--MPGEDGL 68 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILAR 111 + R +R A+ + P+I ++ + + G DD + KP + RE Sbjct: 69 SICRRLRAANDRTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARVHAVLRRRP 128 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 N GP R + GE PL E +L+ L+ + + +++ Sbjct: 129 AQEAPGAPSGDNEVVTFGPFTFDLGTRALQRNGEELPLTTGEFAMLKALVRHPRQPLSRE 188 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++ G + + ++ +S+LRK + + + + +GY Sbjct: 189 KLALLARGR-EFEPFDRSLDVQVSRLRKLVEVDAAAPRYIQTVWGVGYVF 237 >gi|187779465|ref|ZP_02995938.1| hypothetical protein CLOSPO_03061 [Clostridium sporogenes ATCC 15579] gi|187773090|gb|EDU36892.1| hypothetical protein CLOSPO_03061 [Clostridium sporogenes ATCC 15579] Length = 229 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 47/227 (20%), Positives = 87/227 (38%), Gaps = 9/227 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + F D G + ++ D+ I ++ Sbjct: 5 ILIVDDEDDIVSFIKDYFEDQGYRVITASNGREAIEYCDK---DIDIILLDIMMPNIDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + IR P+I +S S + G DD + KP +E+ ARV A RR K Sbjct: 62 QVCQKIRNKVSCPIIFLSARQSEVDKIKGLSVGGDDYIVKPFSIKELKARVQAHLRREKR 121 Query: 122 SNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 ++ R + E +E I+E L + + +K QI+ + Sbjct: 122 VPLNNKSKISFGKLNLDLSSRKVYYEEEEIIFTAKEFDIVELLALHPEQVFSKEQIYEKV 181 Query: 178 YGLFDEAVEENVVESHISKLRKK-LRNKLGFDPVDSKRFLGYSIDWN 223 +G +D + N V HI K+R K ++ + + + +GY + N Sbjct: 182 WG-YDAEGDANTVAEHIKKIRAKFIKRSASLNHIATVWGVGYRWEKN 227 >gi|88799154|ref|ZP_01114734.1| phosphate regulon transcriptional regulatory protein PhoB [Reinekea sp. MED297] gi|88778137|gb|EAR09332.1| phosphate regulon transcriptional regulatory protein PhoB [Reinekea sp. MED297] Length = 240 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 39/222 (17%), Positives = 94/222 (42%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +++DD A +++ A G ++ + + + D+ ++ + G + Sbjct: 11 ILIVDDEAPIREVIAAALEMAGYRTLEASNAQDAHSIVVDQKPDLILLDWMMPQVSGVEF 70 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118 + +++P+I ++ + ++G DD + KP RE++AR+ A Sbjct: 71 ARRLKRDPLTAEIPIIMLTAKGEEDHKITGLEAGADDYITKPFSPRELVARLKAVLRRST 130 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + E +++ + G+ + E R+L++ M++ + + Q+ ++ Sbjct: 131 PAGIDEPIEINGLKLDPNSHRITAHGDELSMGPTEFRLLQFFMSHAERAYTRGQLLDQVW 190 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G + V+E V+ HI +LRK L ++ + + R GY Sbjct: 191 G-GNVYVDERTVDVHIRRLRKGLGDEF-KSLIQTVRGTGYRF 230 >gi|313900503|ref|ZP_07833996.1| response regulator receiver domain protein [Clostridium sp. HGF2] gi|312954565|gb|EFR36240.1| response regulator receiver domain protein [Clostridium sp. HGF2] Length = 231 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 33/225 (14%), Positives = 82/225 (36%), Gaps = 8/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + ++ ++ + + D++ ++ L Sbjct: 5 ILVVDDEKEIAGLVEIYLKNENYKVDVCYTGTQALQNIRTRSYDLAILDVML--PDMDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAIY 116 + R IR + P+I ++ ++ G DD + KP R Sbjct: 63 SICRTIRQNYTWPIIMLTAKEQDIDKINGLMIGADDYMTKPFQPLELIARVKAQLRRYKR 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 ++ + + + + + L E R+L YL +GK V+ ++++A Sbjct: 123 YNVQQKAKELSYLGLVMNQEQHICRLNEKDLNLTPIEFRLLWYLCERQGKVVSARELYTA 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 I+ + N + HI +R+K++++ + + +GY + Sbjct: 183 IWQEEYLSSSNNTLMVHIRHIREKMKDRGEHPRYIQNVWGVGYKL 227 >gi|296446454|ref|ZP_06888398.1| two component transcriptional regulator, winged helix family [Methylosinus trichosporium OB3b] gi|296256089|gb|EFH03172.1| two component transcriptional regulator, winged helix family [Methylosinus trichosporium OB3b] Length = 247 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 59/226 (26%), Positives = 100/226 (44%), Gaps = 8/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A + +G +E + E S + D+ ++ L G L Sbjct: 20 ILVVEDEAALALLLAYNLESEGFQVEHVERGDEAEIRLSESLPDLVILDWML--PGVSGL 77 Query: 62 ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IY 116 E+ R +RA +P+I ++ + G DD V KP E++ARV A Sbjct: 78 EICRRLRARDDTRTMPVIMLTARGDENERVRGLSVGADDYVVKPFSTPELMARVHALLRR 137 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 R + R G I + + R + G L E R+LEYLM G+ ++ Q+ + Sbjct: 138 ARPERVATRLVAGDIDLDRETRRVKRAGREIHLGPTEFRLLEYLMEKPGRVFSRAQLLDS 197 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 ++GL E ++E V+ H+ +LRK + DP+ + R GYS D Sbjct: 198 VWGLSAE-IDERTVDVHVGRLRKAIIRGREKDPIRTVRGTGYSFDE 242 >gi|160913591|ref|ZP_02076281.1| hypothetical protein EUBDOL_00067 [Eubacterium dolichum DSM 3991] gi|158434052|gb|EDP12341.1| hypothetical protein EUBDOL_00067 [Eubacterium dolichum DSM 3991] Length = 250 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 85/228 (37%), Gaps = 10/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D ++G + F E D++ ++ Sbjct: 26 ILVLDDEKEIADLVTLYLRNEGYEIYEFYDSEDAVAFMEHNTIDLALLDIM--MPKINGF 83 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115 E+ ++IR P+I ++ + G DD + KP + E+ R Sbjct: 84 EICKMIREKYTFPVIMLTAKIEDMDKIQGLSLGADDYITKPFNPLEMVARVKAQLRRYTK 143 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 Y + + N + + + +D + + L E IL YL NRGK V ++F Sbjct: 144 YNQPNDNVNIIDFKGLIIDNDSHRVSLYDQPLMLTPIEFNILWYLCKNRGKVVTSEELFE 203 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 A++ N V HI +LR+K+ + + +GY I+ Sbjct: 204 AVWKEKYFD-SNNTVMVHIRRLREKMHEPPRNPKFIKTVWGVGYQIEE 250 >gi|153811407|ref|ZP_01964075.1| hypothetical protein RUMOBE_01799 [Ruminococcus obeum ATCC 29174] gi|149832534|gb|EDM87618.1| hypothetical protein RUMOBE_01799 [Ruminococcus obeum ATCC 29174] Length = 232 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 47/231 (20%), Positives = 88/231 (38%), Gaps = 14/231 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +D + + + D++ ++ L Sbjct: 5 ILVVDDEKEIADLLEVYLKNDNYIVHKYYNGIEALECIQKTEIDLAILDVML--PDIDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + IR + P+I ++ + G DD + KP + E++ARV RR + Sbjct: 63 RICQKIRENYYFPVIMLTAKIDDGDKIMGLTIGADDYITKPFNPLEVIARVKTQLRRYQK 122 Query: 122 SNNRAETGPIR----------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 NN + + D + G+ L E IL YL ++GK V+ Sbjct: 123 YNNPTKKQFFPKSEYDIRGLIINKDTHKCFLFGKEISLTPIEFSILWYLCEHQGKVVSTE 182 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221 ++F I+ N V +HI +LR+KL + + +GY I+ Sbjct: 183 ELFENIWKEKYLD-NNNTVMAHIGRLREKLNEPAKNPKFIKTVWGVGYEIE 232 >gi|15827334|ref|NP_301597.1| two-component response regulator [Mycobacterium leprae TN] gi|221229812|ref|YP_002503228.1| putative two-component response regulator [Mycobacterium leprae Br4923] gi|13092883|emb|CAC30282.1| putative two-component response regulator [Mycobacterium leprae] gi|219932919|emb|CAR70867.1| putative two-component response regulator [Mycobacterium leprae Br4923] Length = 228 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 43/220 (19%), Positives = 85/220 (38%), Gaps = 5/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A + + + +G R D+ ++ L G + Sbjct: 8 ILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDLML--PGMNGI 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R++RA S VP++ ++ + +SG DD + KP +E++ARV A RR Sbjct: 66 DVCRVLRADSGVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRRNDD 125 Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + GE L E +L L + + + ++G Sbjct: 126 EPAEMLSIADVDIDVPAHKVTRNGEHISLTPLEFDLLVALARKPRQVFTRDVLLEQVWG- 184 Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219 + + +V H+ +LR K+ + V + R +GY Sbjct: 185 YRHPADTRLVNVHVQRLRAKVEKDPENPTVVLTVRGVGYK 224 >gi|313207136|ref|YP_004046313.1| two component transcriptional regulator, winged helix family [Riemerella anatipestifer DSM 15868] gi|312446452|gb|ADQ82807.1| two component transcriptional regulator, winged helix family [Riemerella anatipestifer DSM 15868] Length = 225 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 41/223 (18%), Positives = 89/223 (39%), Gaps = 9/223 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +LIDD + + +G + N+ + ++ + G + Sbjct: 6 ILLIDDEPDILEIISYNLKKEGYEVHTANNGNEGIEKAKEILPHLILLDVMMPDKDGIET 65 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVN---KPIHHREILARVAAIYR 117 + R I ++ +S + L + +G +D + KP + + + + Sbjct: 66 CQEIRKIATLEGCLIVFLSARGEEFSQLAGYQAGANDYIVKLIKPKVLISKVNALMNLTQ 125 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 +++ N + G + + D E F LP++E +L L +N K + +I + Sbjct: 126 QVEEKNKILKIGHLIIDRDNFKVTKGDESFILPKKEFDLLNLLASNTEKVFKREEILEKV 185 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G D V E ++ HI +LR+KL +K + + + +GY + Sbjct: 186 WGN-DVVVGERTIDVHIRRLREKLGSKS----IQTLKGIGYKL 223 >gi|300214840|gb|ADJ79256.1| Alkaline phosphatase synthesis two-component response regulator phoP [Lactobacillus salivarius CECT 5713] Length = 233 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 43/230 (18%), Positives = 94/230 (40%), Gaps = 14/230 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + G ++ N+ + + D ++ L G +E Sbjct: 5 LVVDDEQAITTLLKYNLEKAGYEVKTVNNGNDALDEGLTGKYDFIILDLML--PGIDGIE 62 Query: 63 LPRIIRAHSQVPLI-GISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + IR I ++ + + G DD + KP REI+AR+ A+ RR++ Sbjct: 63 VTKRIRQEKITTYILILTAKDDEYDKIIGLELGADDYLTKPFSPREIVARLKAVKRRVEH 122 Query: 122 SNNRAETGPIRVFSDGRD---------PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 ++ +E + G + + L +E +L Y + +G+ + + + Sbjct: 123 YSDNSEKDSKNKYYFGNYVVNLDSYELRDKNNNLIKLTPKEFELLVYFLRKKGRVLGREE 182 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221 + + ++G FD + +V+ H+S LR+K+ + + R GY + Sbjct: 183 LLNNVWG-FDYIGQTRMVDMHVSHLREKIEENPKKPIFLKTVRGFGYRFE 231 >gi|258654371|ref|YP_003203527.1| winged helix family two component transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258557596|gb|ACV80538.1| two component transcriptional regulator, winged helix family [Nakamurella multipartita DSM 44233] Length = 225 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 45/219 (20%), Positives = 85/219 (38%), Gaps = 5/219 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + + +G D+ ++ L G L+ Sbjct: 6 LVVDDDPALAEMLTIVLRGEGFDTAVVRDGSKAVDAFRDVHPDLVLLDLML--PGVSGLD 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + IRA S +P+I ++ + +SG DD V KP +E+ AR+ A RR V Sbjct: 64 VCKEIRAESGIPIIMLTAKTDTVDVVLGLESGADDYVMKPFKPKELTARIRARLRRADVG 123 Query: 123 NNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + + G GE L E +L L + + + ++G + Sbjct: 124 SAERLRVADVDIDVPGHQVTRDGEPISLTPLEFDLLVALARKPRQVFTREVLLEKVWG-Y 182 Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219 A + +V H+ +LR K+ + V + R +GY Sbjct: 183 RHAADTRLVNVHVQRLRSKIEKDPEHPEVVVTVRGVGYR 221 >gi|229065401|ref|ZP_04200655.1| Two-component response regulator [Bacillus cereus AH603] gi|228715871|gb|EEL67636.1| Two-component response regulator [Bacillus cereus AH603] Length = 233 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 49/227 (21%), Positives = 92/227 (40%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ ++G+ + L D+ ++ + Sbjct: 10 ILIVDDDKEIRNLISVYLENEGLKTQKAEDAIGALQLLEEKEFDLIILDIM--MPNMDGI 67 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E IR +P+I +S + SG DD + KP + E++ARV + RR K Sbjct: 68 EACMKIREDRNMPIIMLSAKSEDIDKIQGLASGADDYLTKPFNPLELIARVKSQLRRFKK 127 Query: 122 SNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N V +D R ++G+ L +E ILE L +N+G ++ +I+ Sbjct: 128 YNTSINHNKSILEIGDLTVNTDTRQVWIRGKETRLTPKEFDILELLASNKGIVLSVAKIY 187 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220 A++ +N V HI+K+R K+ + + +GY I Sbjct: 188 EAVWKEV-FYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGYKI 233 >gi|172058213|ref|YP_001814673.1| two component transcriptional regulator [Exiguobacterium sibiricum 255-15] gi|171990734|gb|ACB61656.1| two component transcriptional regulator, winged helix family [Exiguobacterium sibiricum 255-15] Length = 235 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 49/230 (21%), Positives = 92/230 (40%), Gaps = 12/230 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + G +E + L + ++ L L Sbjct: 5 IIVVDDELSIATLLKFNLEQAGFVVETAHDGMTGLKLAEKQDAALIVLDLML--PELDGL 62 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ + +R P++ ++ + + G DD + KP RE++ARV AI RR+ Sbjct: 63 EVCKRLRQQKINTPILMLTAKDDEFDKVLGLELGADDYLTKPFSPREVVARVKAILRRMN 122 Query: 121 VSNNRAETGPIRVF-------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 E + D + E L +E +L YL N+G+ + + Q+ Sbjct: 123 QQTVAEEVTDGTILIGDVKIVPDNYEAFKAEERLELTPKEFELLVYLAKNKGRVLTRDQL 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDW 222 SAI+ +D + +V+ HIS +R+K+ + + R LGY ++ Sbjct: 183 LSAIW-NYDFVGDTRIVDVHISHVREKIEPNTKKPIYIKTIRGLGYKMEE 231 >gi|322804625|emb|CBZ02177.1| two-component response regulator [Clostridium botulinum H04402 065] Length = 228 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 32/224 (14%), Positives = 85/224 (37%), Gaps = 9/224 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + ++ + + + E + +V ++ L G L Sbjct: 4 ILIVEDESSIRGFVKVNLKMNNFDVIEAETGEEGIEKARKHKPEVVVLDIML--PGVDGL 61 Query: 62 ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH----REILARVAAIY 116 E+ + + + + +I ++ + + G DD + KP + I A + + Sbjct: 62 EVCKTLRQEFPNMGIIMLTAKSQDTDKVSGLEYGADDYIIKPFNPLELTLRIKAILRRVN 121 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + ++N GP ++ + E + E +++ + N GK + ++ Sbjct: 122 AVKESNDNIITGGPFKIDLYSKKIYKNKEEIDITPTEYLLMKIFIENPGKAFNRDELLDL 181 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYS 219 ++G +D + +V+ +I +LR K+ + + GY Sbjct: 182 VWG-YDFMGDSKIVDVNIRRLRSKIEETPSEPKFIKTVWGTGYR 224 >gi|154482504|ref|ZP_02024952.1| hypothetical protein EUBVEN_00171 [Eubacterium ventriosum ATCC 27560] gi|149736634|gb|EDM52520.1| hypothetical protein EUBVEN_00171 [Eubacterium ventriosum ATCC 27560] Length = 231 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 49/224 (21%), Positives = 94/224 (41%), Gaps = 6/224 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ + ++ E + + D+ I ++ Sbjct: 12 ILVVDDEDRMRKLVRDFLVRKQYEVVEASNGEEAVDVFVESN-DIDLIILDVMMPKMDGW 70 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E R IR S+VP+I ++ L F+ GVD+ ++KP R ++ARV AI RR Sbjct: 71 EACREIRKISKVPIIMLTAKSEESDELLGFELGVDEYISKPFSPRILVARVDAILRRTNN 130 Query: 122 SNNRAETG--PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 I + V+GE L +E +L Y + N+G +++ I + ++ Sbjct: 131 IGQDQIEQAGDIEINKAAHIVTVKGEPIELSFKEFELLSYFIQNKGIALSRENILNNVW- 189 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 +D + +++H+ KLR KL + + +GY + N Sbjct: 190 NYDYFGDARTIDTHVKKLRNKLGECG--KYIVTIWGMGYKFEVN 231 >gi|86607748|ref|YP_476510.1| DNA-binding response regulator RpaA [Synechococcus sp. JA-2-3B'a(2-13)] gi|86556290|gb|ABD01247.1| DNA-binding response regulator RpaA [Synechococcus sp. JA-2-3B'a(2-13)] Length = 250 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 47/228 (20%), Positives = 92/228 (40%), Gaps = 9/228 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++I+D + D G + + L D+ ++ L G V Sbjct: 4 ILIIEDDPSILDILRINLELAGYEVVKATDGVRGQALALQVLPDLIILDLMLPQVDGLTV 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R S++P++ ++ Q ++ F++G DD + KP +E+L RV A+ RR Sbjct: 64 CQRLRREERTSEIPILMLTALGQTQDKIEGFNAGADDYLTKPFEVQELLVRVRALLRRSD 123 Query: 121 VSNNRAETGPIRVF------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 A+ G I + + + G+ L E +L LM G+ V+ ++I Sbjct: 124 RIPQAAKHGEILTYGPLTLVPERFEALWFGKTIKLTHLEFDLLHCLMQRHGQTVSPSEIL 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 ++G ++ + + HI LR KL + + + GY ++ Sbjct: 184 QEVWG-YEPDDDIETIRVHIRHLRTKLEPDPRHPQYIKTVYGAGYCLE 230 >gi|56420692|ref|YP_148010.1| two-component response regulator [Geobacillus kaustophilus HTA426] gi|56380534|dbj|BAD76442.1| two-component response regulator [Geobacillus kaustophilus HTA426] Length = 224 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 50/221 (22%), Positives = 86/221 (38%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D A + +G + L S + D+ ++ L + Sbjct: 5 ILLIEDEAGLARFLELDLKHEGFDVHVCADGREGLELALSEQWDLILLDVML--PRLNGM 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119 E+ R IRA P+I I+ S+ + D+G DD + KP E+ R Sbjct: 63 EVCRRIRAAKSTPIIMITARDSVFDRVMGLDNGADDYIVKPFAIEELLARIRALFRRVHP 122 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + + V R + E L +RE +L M N + + + ++G Sbjct: 123 EANAQVLTFKDLVVDVQARTVKKGDEFIELTKREYDLLVAFMQNINVVLTRDALLDKVWG 182 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 FD VE NVV+ ++ LR+KL + + R GY + Sbjct: 183 -FDAEVETNVVDVYVRYLRQKLDEHDKERYIQTVRGTGYVM 222 >gi|187777143|ref|ZP_02993616.1| hypothetical protein CLOSPO_00688 [Clostridium sporogenes ATCC 15579] gi|187774071|gb|EDU37873.1| hypothetical protein CLOSPO_00688 [Clostridium sporogenes ATCC 15579] Length = 227 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 43/226 (19%), Positives = 88/226 (38%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +K+ +G ++ ++ E L D+ ++ + Sbjct: 5 ILVVDDDITIKNLIEVYLKSEGYDVDNASNGEEALNLIGDYNYDLVILDIM--MPKLDGI 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115 IR +P+I +S + G DD ++KP E+ R Sbjct: 63 LTCIKIREKFTMPIIFLSAKGEELDKIQGLTVGADDYISKPFGSMELLARVKAQLRRYKK 122 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + +S N E + + D + V+GE L +E ILE L N+G + +++ Sbjct: 123 FNSITISKNIIEIEDLVINVDTHEVNVRGENIKLTSKEFNILECLARNKGIVFSVEKLYE 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++ V + V HI+ +R+K+ + + + +GY I Sbjct: 183 TVWKEK-FVVSDTSVVVHITNIRQKIEIDPKAPQYIKTVWGVGYKI 227 >gi|330961382|gb|EGH61642.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. maculicola str. ES4326] Length = 229 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 45/224 (20%), Positives = 92/224 (41%), Gaps = 9/224 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A +++ G + + + + D+ ++ L G + Sbjct: 6 ILIVDDEAPIREMIAVALEMAGYDCIEAENSQQAHAIIVDRKPDLILLDWML--PGTSGI 63 Query: 62 ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IY 116 EL R ++ +P+I ++ + + G DD + KP RE++AR+ A Sbjct: 64 ELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 E G + + + G+ + E R+L++ M ++ + + Q+ Sbjct: 124 AGPTDGEAPIEVGGLLLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAYTRGQLLDQ 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + VEE V+ HI +LRK L + + V + R GY Sbjct: 184 VWG-GNVYVEERTVDVHIRRLRKALGDAYE-NLVQTVRGTGYRF 225 >gi|229029684|ref|ZP_04185759.1| DNA-binding response regulator [Bacillus cereus AH1271] gi|228731626|gb|EEL82533.1| DNA-binding response regulator [Bacillus cereus AH1271] Length = 218 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 37/218 (16%), Positives = 90/218 (41%), Gaps = 4/218 (1%) Query: 6 DDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPR 65 DD +++ +G + D+ ++ ++ Sbjct: 2 DDDPHIRELVSVFLEREGFQTYEAIDGLDALQKIDEVKVDMVILDIM--MPNMDGFDVCF 59 Query: 66 IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125 +R + +P++ ++ + F G DD + KP E++ RV A+ +R +++ ++ Sbjct: 60 ELRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQITVSQ 119 Query: 126 AETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 + + + V + LP +E +L L + G+ ++ Q+ ++G +D Sbjct: 120 SIQVGDVLLNRKTFEVSVGEQTVTLPLKEFELLFTLGSKAGRTCSREQLIEDVWG-YDFE 178 Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 E ++ HI++LR+K + + + + R LGY ++ Sbjct: 179 GNERTLDVHINRLREKFQEEKSKFSIKTIRGLGYRLEV 216 >gi|86738952|ref|YP_479352.1| two component transcriptional regulator [Frankia sp. CcI3] gi|86565814|gb|ABD09623.1| two component transcriptional regulator, winged helix family [Frankia sp. CcI3] Length = 242 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 48/222 (21%), Positives = 94/222 (42%), Gaps = 8/222 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + D +G + +S + + + D+ ++ L Sbjct: 21 LVVDDEEAITDLVTMALRYEGFDVRAAHSGQAALTQAALSPPDLLVLDVML--PDIDGFA 78 Query: 63 LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + +R Q VP + ++ + + + G DD V KP E++ARV AI RR Sbjct: 79 VCERLRRSGQGVPTLFLTARDATEDKVHGLTLGGDDYVTKPFAVSELIARVRAILRRAGA 138 Query: 122 SNNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++ + R+ G L E R+L YL+AN K + + Q+ ++ Sbjct: 139 ADGAPTPLRFADLELDPETREVRRAGRHVDLTATEYRLLHYLLANARKVLTRAQLLDHVW 198 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G D + V+E+++S LR+K+ + + + R +GY + Sbjct: 199 G-HDFGGDARVLETYVSYLRRKIDDVP-PPLIHTVRGVGYVL 238 >gi|87122181|ref|ZP_01078064.1| Two component response regulator [Marinomonas sp. MED121] gi|86162501|gb|EAQ63783.1| Two component response regulator [Marinomonas sp. MED121] Length = 226 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 48/222 (21%), Positives = 95/222 (42%), Gaps = 7/222 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D V + G ++ + S D ++ L G L Sbjct: 4 LVVEDDKEVAQFIGSSLQQIGYVVDRCEDGKQGLLQASVETYDAIILDRML--PGLDGLN 61 Query: 63 LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L + +RA S VP++ +S + ++ +G DD + KP E+ AR+ ++RR Sbjct: 62 LLKTLRATGSNVPILLLSAMADVSHRVEGLQAGADDYLTKPFAFSELHARLEVMFRRNTH 121 Query: 122 SNNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + ++ + + L RE R+LEYL+ N+ + V +T + +++ Sbjct: 122 ESGEQTSLHCADLSLNLLTQEAKRAETLISLQPREYRLLEYLLRNQDRVVTRTMLLESVW 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + NV++ HIS+LR K+ + + R GY I Sbjct: 182 D-YHFDPQTNVIDVHISRLRNKIDKPFSQVLIHTIRGRGYVI 222 >gi|138895944|ref|YP_001126397.1| two-component response regulator [Geobacillus thermodenitrificans NG80-2] gi|196248835|ref|ZP_03147535.1| two component transcriptional regulator, winged helix family [Geobacillus sp. G11MC16] gi|134267457|gb|ABO67652.1| Two-component response regulator [Geobacillus thermodenitrificans NG80-2] gi|196211711|gb|EDY06470.1| two component transcriptional regulator, winged helix family [Geobacillus sp. G11MC16] Length = 224 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 39/222 (17%), Positives = 87/222 (39%), Gaps = 8/222 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD ++ + G + + + D ++ + Sbjct: 7 LIVDDEEEMRLLVSMYLENAGFCCLEAGDGDEALTVLARRSVDAILLDVM--MPNQDGFS 64 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRRL 119 + IR S VP++ ++ + F G DD + KP E++AR+ R Sbjct: 65 VCARIREQSDVPILFLTALGEEWDKVKGFKLGGDDYIVKPFSPGELIARLEAVLRRTWRG 124 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + + + G + + GR V E L +E +L +L + G+ ++ + ++G Sbjct: 125 RERDGQLQFGNLAIDEKGRKVTVGSEPVRLTLKEFELLLFLAKHHGQVFSRDDLLVNVWG 184 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +D V++H+ LR KL++ + + +GY + Sbjct: 185 -YDYTGNARTVDTHVKTLRMKLKDAG--RYIQTVWGIGYKFE 223 >gi|331001813|ref|ZP_08325335.1| hypothetical protein HMPREF0491_00197 [Lachnospiraceae oral taxon 107 str. F0167] gi|330412787|gb|EGG92170.1| hypothetical protein HMPREF0491_00197 [Lachnospiraceae oral taxon 107 str. F0167] Length = 235 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 51/232 (21%), Positives = 89/232 (38%), Gaps = 15/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D DG + NS E L + ++ ++ G L Sbjct: 6 ILVVDDEKEIADLVEIYLVSDGFKVFKANSAEDGLKLIENEDIHLAILDIM--MPGMDGL 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IR P+I +S + + +G DD V KP + E+ ARV + RR Sbjct: 64 EMCKKIRETHNFPIILLSAKSADLDKILGLGTGADDYVTKPFNTLELTARVKSQLRRYTQ 123 Query: 122 -----------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 N + + D ++G L E IL L +N G+ + Sbjct: 124 LNPNSSVIDKDDPNEIRLKGMSINKDNHKVIIEGNEVKLTPIEFDILYLLASNAGRVFST 183 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221 +IF ++ N V HI +LR K+ ++ + + +GY I+ Sbjct: 184 DEIFEKVWNEKVYEAN-NTVMVHIRRLRGKMNEDERENKIITTVWGVGYKIE 234 >gi|328883264|emb|CCA56503.1| putative two-component system response regulator [Streptomyces venezuelae ATCC 10712] Length = 233 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 45/232 (19%), Positives = 91/232 (39%), Gaps = 21/232 (9%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 + ++D ++++ DG + + R D++ ++ L G + Sbjct: 7 LFVEDDDVIREATQLALERDGFRVTAMPDGLSGLDAFRAQRPDIALLDVML--PGMDGVS 64 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R IR S VP+I +S + ++G DD V KP ++AR+ A+ RR + Sbjct: 65 LCRRIRDESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGSVLMARIRAVLRRFGHA 124 Query: 123 NNRAETGPIRV--------------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 ++G + G L E R+L + G + Sbjct: 125 GGPGAGEHGEETPDGGLLAFGDLEVDTEGMEVRKAGAPVALTPTEMRLLLEFSSAPGTVL 184 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ ++ ++ + + VV+ H+ +LR K+ G D +++ R GY + Sbjct: 185 SRDKLLERVWD-YGWGGDTRVVDVHVQRLRAKI----GQDRIETVRGFGYKL 231 >gi|307547006|ref|YP_003899485.1| phosphate regulon transcriptional regulator PhoB [Halomonas elongata DSM 2581] gi|307219030|emb|CBV44300.1| phosphate regulon transcriptional regulatory protein PhoB [Halomonas elongata DSM 2581] Length = 229 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 44/223 (19%), Positives = 93/223 (41%), Gaps = 9/223 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD A +++ + ++ + + + D+ ++ G +E Sbjct: 7 LIVDDEAPIREMIAVALEMADYHVLEADNAQAAHAMIVDHQPDLVLLDWM--MPGTSGIE 64 Query: 63 LPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L R ++ +++P+I ++ + D+G DD + KP RE++AR+ A+ RR Sbjct: 65 LARRLKREETTAEMPIIMLTAKSEEDNKIQGLDAGADDYITKPFSPRELVARLKAVLRRS 124 Query: 120 KVSNNRAETGPIR--VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + V G + E R+L++ M ++ + + Q+ + Sbjct: 125 TPHGVEDPVEVDGLLLDPVSHRVSVDGNSLEVGPTEYRLLQFFMTHQERAYTRGQLLDQV 184 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G + VEE V+ HI +LRK L + + + R GY Sbjct: 185 WG-GNVYVEERTVDVHIRRLRKALGDPY-QQLIQTVRGTGYRF 225 >gi|289550823|ref|YP_003471727.1| Putative response regulator ArlR [Staphylococcus lugdunensis HKU09-01] gi|315658319|ref|ZP_07911191.1| response regulator [Staphylococcus lugdunensis M23590] gi|289180355|gb|ADC87600.1| Putative response regulator ArlR [Staphylococcus lugdunensis HKU09-01] gi|315496648|gb|EFU84971.1| response regulator [Staphylococcus lugdunensis M23590] Length = 219 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 47/219 (21%), Positives = 86/219 (39%), Gaps = 4/219 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + ++ N + + D+ ++ L L Sbjct: 4 ILIVEDEQNLARFLELELTHENYKVDIENDGQSGLDKALTKTYDLIILDIML--PHINGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR P+I I+ + D G DD + KP E+ R + Sbjct: 62 EICRRIRQQYTTPIIIITAKSETMDKVTGLDYGADDYIVKPFEIEEL-FARIRAILRRQP 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + I + + + V G L + E +L L NR + + QI ++G + Sbjct: 121 QKDVIDINGIIIDKNAFEVTVDGTQLDLTKTEYDLLYVLAENRNHVLQREQILDHVWG-Y 179 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D VE NVV+ +I LR KL+ +++ R +GY I Sbjct: 180 DSEVETNVVDVYIRYLRNKLKPFNKERTIETVRGVGYVI 218 >gi|326202141|ref|ZP_08192011.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] gi|325987936|gb|EGD48762.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] Length = 233 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 46/226 (20%), Positives = 89/226 (39%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + DG + + + + ++ L Sbjct: 8 ILVVDDEVKISEVIKSYLEHDGYKVVTALNGKEAMESYKEFNPHLIILDLML--PDISGE 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IR +S VP+I ++ S + D G DD V KP R++LARVAA+ RR+ Sbjct: 66 EICKRIRKNSSVPIIMLTAKVSDDEVITGLDIGADDYVLKPFSPRQLLARVAAVLRRVVK 125 Query: 122 SN------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + G + + + + G + E RIL + K + ++ + Sbjct: 126 EPVADTGKIIFDNGDLVIDTFVHEIRKAGNTINVTPNEYRILVTMAGFPKKTFTRDELIN 185 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 G D + V++HI LR+K+ + + + +GY Sbjct: 186 MALG-DDFEGFDRTVDTHIKNLRQKIEDDPKTPRYLVTVHGIGYRF 230 >gi|111223230|ref|YP_714024.1| putative response regulator in two-component regulatory system [Frankia alni ACN14a] gi|111150762|emb|CAJ62464.1| putative response regulator in two-component regulatory system [Frankia alni ACN14a] Length = 246 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 41/220 (18%), Positives = 88/220 (40%), Gaps = 5/220 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D ++G +++ W + D ++ L G E Sbjct: 4 LVVEDEVRTAAVLRRGLVEEGYAVDVVGDGIDAVWRATEIAYDAIVLDLML--PGIDGFE 61 Query: 63 LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120 + R +RA H P++ ++ + + D+G DD + KP E+ AR+ A + R Sbjct: 62 VCRRLRAGHRWAPVLMLTARVDVDDRIRGLDAGADDYLPKPFSFGELTARLRALVRRGAV 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 G + + G GE L +E +L L+ + + + +T I ++ Sbjct: 122 HRPVVLRAGAVELDPAGHRVWRGGEPVDLSAKEFALLHLLLRHPDQVLTRTYITEHVWD- 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 N+V+ ++ LR+K+ +++ R +GY + Sbjct: 181 DAFDATSNIVDQYVRYLRRKIDLPPAPSLIETVRGVGYRL 220 >gi|77409125|ref|ZP_00785839.1| phosphate regulon response regulator PhoB [Streptococcus agalactiae COH1] gi|77172253|gb|EAO75408.1| phosphate regulon response regulator PhoB [Streptococcus agalactiae COH1] Length = 225 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 47/225 (20%), Positives = 86/225 (38%), Gaps = 6/225 (2%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEK 59 M ++D A +++ + G + +GF+S E D+ ++ L G G Sbjct: 1 MIYCVEDDADIREMMLYTLQMAGFTAQGFSSSELFWEAVQEKVPDLILLDIMLPGDDGLT 60 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYR 117 +LE R +P+I + S + D G DD + KP E+++R+ A Sbjct: 61 ILERLRRKHQTEMIPVIMTTAKGSEYDKVKGLDLGADDYLVKPFGMMEMISRIKAVLRRS 120 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 R S G + + + E L +E +L N + + ++ + Sbjct: 121 RQVDSKAHIIIGNLEIDPTNYWVKRGTEKIHLTLKEFELLVLFFRNPNRVFTRQELLDKV 180 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +G E V+ HI LR KL + + R +GY ++ Sbjct: 181 WGE-QFLGETRTVDVHIGTLRTKLGEDGY--LIATVRGVGYRLEE 222 >gi|331699748|ref|YP_004335987.1| winged helix family two component transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326954437|gb|AEA28134.1| two component transcriptional regulator, winged helix family [Pseudonocardia dioxanivorans CB1190] Length = 259 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 43/224 (19%), Positives = 80/224 (35%), Gaps = 10/224 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD ++ D+G ++ +S E L + D ++ L G L Sbjct: 30 LVVDDDGRIRQALSLALDDEGFAVSTASSGEEAMTLLARDPVDTVLLDLML--PGTDGLT 87 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP------IHHREILARVAAIY 116 + R +RA +P+I ++ + ++G DD V+KP L R Sbjct: 88 VCRRLRARGDLPIIIVTARSESAEVIAGLEAGADDYVSKPVVAGELAARIRALVRRRRPD 147 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + L R E R+L L GK V + + Sbjct: 148 TAAATLTIGDVEVRPDEGVVRCHRDGGTADVHLTRTEFRLLVELAVAGGKVVTREDLLRR 207 Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219 ++ +D + +++ HI +LR K+ + V + R GY Sbjct: 208 VWD-YDYLGDTRLLDVHIRRLRCKIERDPDHPALVLTVRGSGYR 250 >gi|306835487|ref|ZP_07468504.1| two component system response regulator [Corynebacterium accolens ATCC 49726] gi|304568653|gb|EFM44201.1| two component system response regulator [Corynebacterium accolens ATCC 49726] Length = 230 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 38/221 (17%), Positives = 87/221 (39%), Gaps = 6/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + +G++ D+ ++ L G + Sbjct: 5 ILVVDDDPAISEMLTIVLESEGLNPVPVMDGNDAVPAFREHEPDLILLDLML--PGMNGV 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R IR S VP++ ++ + +SG DD + KP +E++AR+ A RR Sbjct: 63 DICRTIRRESAVPIVMLTAKTDTVDVVLGLESGADDYITKPFKPKELIARIRARLRRTDS 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFP--LPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + + + L E +L + + G+ + + +++G Sbjct: 123 AEPETLEVADLIIDVPEHTVRRTDGTELNLTPLEFDLLLEMARHPGQVHTRESLLESVWG 182 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVD-SKRFLGYS 219 + A + +V H+ +LR K+ + + + R +GY Sbjct: 183 YRN-ASDTRLVNVHVQRLRAKIEHDPEDPQIVLTVRGVGYK 222 >gi|229198983|ref|ZP_04325670.1| Two-component response regulator [Bacillus cereus m1293] gi|228584529|gb|EEK42660.1| Two-component response regulator [Bacillus cereus m1293] Length = 229 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 53/229 (23%), Positives = 90/229 (39%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++++ F + + + + D+ ++ L Sbjct: 5 ILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIML--PELDGW 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR-------EILARVAA 114 + R IR S+VP+I ++ TL F+ G DD V KP +L Sbjct: 63 SVCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKV 122 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 R L+ ++ I V R V L E IL YLM N+G + + Q+ Sbjct: 123 TKRLLENEDDTLSIHGIHVHFPSRTVTVDKTDINLTHTEFEILAYLMKNQGIVLTREQLI 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 S I+G ++ A ++ V SHI LR KL K + + GY + N Sbjct: 183 SKIWG-YEFAGDDRTVNSHIRNLRNKLGEK--AKYITTVVRTGYKFEGN 228 >gi|134096719|ref|YP_001102380.1| two component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|291009616|ref|ZP_06567589.1| two component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|133909342|emb|CAL99454.1| two component system response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 220 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 49/222 (22%), Positives = 94/222 (42%), Gaps = 10/222 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ +D A + +G + + + D+ ++ L G+ Sbjct: 4 ILIAEDEARIAAFIEKGLRANGFTTTVVGDGDTALDYVLTGDFDLVVLDLGL--PGKDGF 61 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R +RA VP+I ++ S+ T+ + G DD + KP E+LARV R Sbjct: 62 AVLRALRAQRVTVPVIILTARDSVHDTVAGLEGGADDYMTKPFRFEELLARVRLRLRPTD 121 Query: 121 VSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + G + + R +V L RE +LE + + G+ +++ QI S ++ Sbjct: 122 RAPEVTVLRDGELSLDLRTRRAQVPEGTVDLTAREFSMLELFLRHSGQVLSREQILSHVW 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G +D NVV+ ++ LR+K+ G + + R +GY + Sbjct: 182 G-YDFDPGSNVVDVYVRALRRKI----GSTRIHTVRGMGYRL 218 >gi|189425983|ref|YP_001953160.1| two component transcriptional regulator, winged helix family [Geobacter lovleyi SZ] gi|189422242|gb|ACD96640.1| two component transcriptional regulator, winged helix family [Geobacter lovleyi SZ] Length = 233 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 40/225 (17%), Positives = 86/225 (38%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + A + ++ + ++ L + Sbjct: 5 ILIVEDDLKIARIIKAYLEGADFRVIHADTARAALEKAEAELPLAVILDLGL--PDKSGE 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL + ++ P+I ++ S + + F G DD V KP RE++ RV A+ +R Sbjct: 63 ELCQELKDLGSFPVIMLTAKSSEEERITGFALGADDYVVKPASPRELVYRVKAVLKRYDG 122 Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + S +GE + E ++L+ L A+ G+ ++ ++ S Sbjct: 123 AGAGEHPISFNNGTLILDSRRHTVTCRGESCSVTPTEFKLLQALAASPGRTYSRDELVSK 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 G + E V++HI LR+K+ + + + + +GY Sbjct: 183 ALG-YQFDGYERSVDAHIKNLRQKIELDSRKPEFIKTVYGIGYLF 226 >gi|30262552|ref|NP_844929.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47527850|ref|YP_019199.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49185393|ref|YP_028645.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|49479219|ref|YP_036667.1| DNA-binding response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|165869212|ref|ZP_02213872.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167632497|ref|ZP_02390824.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|167637603|ref|ZP_02395882.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170685561|ref|ZP_02876785.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|170704849|ref|ZP_02895315.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|177649426|ref|ZP_02932428.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|196036697|ref|ZP_03104089.1| DNA-binding response regulator [Bacillus cereus W] gi|196040320|ref|ZP_03107621.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|196043173|ref|ZP_03110411.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|218903690|ref|YP_002451524.1| DNA-binding response regulator [Bacillus cereus AH820] gi|225864541|ref|YP_002749919.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|227814629|ref|YP_002814638.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228915145|ref|ZP_04078742.1| Sensor histidine kinase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228933850|ref|ZP_04096695.1| Sensor histidine kinase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228946198|ref|ZP_04108531.1| Sensor histidine kinase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229091551|ref|ZP_04222759.1| Sensor histidine kinase [Bacillus cereus Rock3-42] gi|229122099|ref|ZP_04251315.1| Sensor histidine kinase [Bacillus cereus 95/8201] gi|229184788|ref|ZP_04311981.1| Sensor histidine kinase [Bacillus cereus BGSC 6E1] gi|229602327|ref|YP_002866875.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|254685128|ref|ZP_05148988.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254722537|ref|ZP_05184325.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254737579|ref|ZP_05195282.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254743238|ref|ZP_05200923.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254751894|ref|ZP_05203931.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|254760414|ref|ZP_05212438.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|30257184|gb|AAP26415.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47502998|gb|AAT31674.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49179320|gb|AAT54696.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|49330775|gb|AAT61421.1| DNA-binding response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|164715938|gb|EDR21455.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167514152|gb|EDR89519.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|167532795|gb|EDR95431.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170130650|gb|EDS99511.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|170670921|gb|EDT21660.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|172084500|gb|EDT69558.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|195990661|gb|EDX54637.1| DNA-binding response regulator [Bacillus cereus W] gi|196025482|gb|EDX64151.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|196028805|gb|EDX67411.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|218535416|gb|ACK87814.1| DNA-binding response regulator [Bacillus cereus AH820] gi|225786925|gb|ACO27142.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|227007355|gb|ACP17098.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228598692|gb|EEK56319.1| Sensor histidine kinase [Bacillus cereus BGSC 6E1] gi|228661442|gb|EEL17066.1| Sensor histidine kinase [Bacillus cereus 95/8201] gi|228691775|gb|EEL45524.1| Sensor histidine kinase [Bacillus cereus Rock3-42] gi|228813489|gb|EEM59777.1| Sensor histidine kinase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228825806|gb|EEM71594.1| Sensor histidine kinase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228844574|gb|EEM89628.1| Sensor histidine kinase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229266735|gb|ACQ48372.1| DNA-binding response regulator [Bacillus anthracis str. A0248] Length = 231 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 44/230 (19%), Positives = 84/230 (36%), Gaps = 12/230 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD + + ++G ++ + + S+ D+ ++ L Sbjct: 5 ILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQMISTYEVDLMILDIM--MPKRNGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARVA 113 E+ + +R ++ VP++ +S + +G DD + KP + E + Sbjct: 63 EVCQEVRENNTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSF 122 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 K + + +V GE L E IL L +N G+ + +I Sbjct: 123 QNASSPKNEDGMIRIRSAEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEI 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222 F ++ D V HIS LR KL G + + +GY I+ Sbjct: 183 FERVWNE-DGYGSNKTVMVHISNLRDKLETGMNGEKFIHTVWGVGYKIEK 231 >gi|300173928|ref|YP_003773094.1| two-component response regulator [Leuconostoc gasicomitatum LMG 18811] gi|299888307|emb|CBL92275.1| Two-component response regulator [Leuconostoc gasicomitatum LMG 18811] Length = 229 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 43/229 (18%), Positives = 92/229 (40%), Gaps = 9/229 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + ++G + + ++ D++ + ++ L Sbjct: 3 ILVVDDDIEIAELLEIYLKNEGYEPVMASDGKEAISKLNTN-PDIALMVLDVMMPNMNGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ +I+R S++P++ +S + +G DD V KP + E++ARV ++ RR + Sbjct: 62 EVVKIVRKDSRIPILMLSAKSGDMDKIQGLITGADDYVTKPFNPLEVMARVRSLLRRAEN 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF------PLPRRERRILEYLMANRGKRVAKTQIFS 175 S + + S + + L E I L ++ + + IF Sbjct: 122 SVQDQTPDVLDIGSLVINKDSHEVKTADGDLVNLTALEFGIFYLLASHPNRVFSADDIFE 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223 ++ + V V H+S LR K+ G + + +GY I+ N Sbjct: 182 RVW-QQESVVSAKTVMVHVSHLRDKIEEATNGNQVIQTVWGVGYKIEVN 229 >gi|269836941|ref|YP_003319169.1| two component transcriptional regulator, winged helix family [Sphaerobacter thermophilus DSM 20745] gi|269786204|gb|ACZ38347.1| two component transcriptional regulator, winged helix family [Sphaerobacter thermophilus DSM 20745] Length = 240 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 42/233 (18%), Positives = 88/233 (37%), Gaps = 16/233 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQS---SAREDVSAIEAFLIGKGE 58 V+++D + ++G +E + D+ ++ L Sbjct: 4 IVVVEDERELATLVERALREEGHRVEVIRDGAAALERLTGPGQPEPDLIVLDLML--PNV 61 Query: 59 KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------IL 109 LE+ R +R P++ ++ + + + G DD + KP RE Sbjct: 62 DGLEICRRVRQSKITPILMLTARSTELDRVLGLELGADDYLTKPFSLRELQARVSAILRR 121 Query: 110 ARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 + R + R + G + + R+ +G+ L +E +L L AN G+ + Sbjct: 122 VEMMRALSRTEDGTTRIDHGDLTIDPLSREVTSRGQPVHLTAKEFDLLHLLAANPGRVFS 181 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSID 221 + + ++G D + V++HI +LRKKL + + + +GY + Sbjct: 182 RDYLLHRVWGE-DYVGVDRTVDTHILRLRKKLGGPGSPAERIVTLWGVGYKYE 233 >gi|302386981|ref|YP_003822803.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] gi|302197609|gb|ADL05180.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] Length = 237 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 45/231 (19%), Positives = 83/231 (35%), Gaps = 11/231 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A +++ + G S+ + S D+ I ++ G + Sbjct: 7 ILVVDDDADIREVLRIQLENKGYSVWEAVNGNDAVAAV-SENPDIDLIILDIMMPGLSGI 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112 + IR + P++ ++ +++G DD + KP E V Sbjct: 66 DACTQIRKITSAPVLFLTAKSKESDKTAAYENGGDDYLVKPFSQAELLMKVRSLLRRYVV 125 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + I + + R + + L E ++L YL+ NRGK Sbjct: 126 YKGKTEPVFNLSEIRIQDILIDTTYRFVYRENQKIELTDTEFQVLMYLVRNRGKAKDAQA 185 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 I+ ++ N V HI KLRKKL + + + GY ID Sbjct: 186 IYEGVWNDRFLPSSTNTVMVHILKLRKKLELDFNNPAIIRTVWGKGYQIDE 236 >gi|257439717|ref|ZP_05615472.1| phosphate regulon transcriptional regulatory protein Phob [Faecalibacterium prausnitzii A2-165] gi|257197857|gb|EEU96141.1| phosphate regulon transcriptional regulatory protein Phob [Faecalibacterium prausnitzii A2-165] Length = 257 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 32/222 (14%), Positives = 85/222 (38%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + DG + + D+ ++ L Sbjct: 31 ILIVEDDSFLNKMLDYNLTADGYGVTSALNARTAAEAIRQREFDLVLLDINL--PDGNGF 88 Query: 62 ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH---REILARVAAIYR 117 EL ++I H +I ++ + ++ G D + KP + + + A+ Sbjct: 89 ELCKLIKPQHPDTIVIFLTANDQESDQIRGYEVGAVDYITKPFVIGALQRKIKAMFAMLE 148 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 K + + + G + + + + G+ L E ++L N + + + Q+ + Sbjct: 149 HHKPAKDIYDDGRLFLDFSEQTASLNGKPLTLSPMEYKMLNLFRKNPRQVLTRGQLLEKL 208 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 + + + V+E+ + + IS++R K+ + G + + +GY Sbjct: 209 WDIDERFVDEHTLTTSISRIRSKIESDGGAPYIKTVYGMGYQ 250 >gi|196042864|ref|ZP_03110103.1| regulatory protein VanR [Bacillus cereus 03BB108] gi|225865207|ref|YP_002750585.1| regulatory protein VanR [Bacillus cereus 03BB102] gi|229185478|ref|ZP_04312659.1| hypothetical protein bcere0004_30300 [Bacillus cereus BGSC 6E1] gi|196026348|gb|EDX65016.1| regulatory protein VanR [Bacillus cereus 03BB108] gi|225787874|gb|ACO28091.1| regulatory protein VanR [Bacillus cereus 03BB102] gi|228597988|gb|EEK55627.1| hypothetical protein bcere0004_30300 [Bacillus cereus BGSC 6E1] Length = 231 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 89/228 (39%), Gaps = 10/228 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + D ++ ++ + + + D++ ++ L L Sbjct: 6 LIVEDEREIADLVELYLKNENYTVFKYYTAKEALECIDKNAIDLAILDIML--PDVSGLT 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + IR P+I ++ + + G DD + KP E++ARV A RR K Sbjct: 64 ICQKIREKHTYPIIMLTAKDTEVDKITGLTIGADDYITKPFRPLELIARVKAQLRRYKKY 123 Query: 123 N-------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 N N + + + + + L E IL L N+G V+ Q+F Sbjct: 124 NGVTAQNENVIVHSGLVINISTHECSLNEKPLSLTPTEFSILRILCENKGNVVSSEQLFH 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222 I+G + N + HI LR+K+ + + + +GY I+ Sbjct: 184 EIWGDEYFSKSNNTITVHIRHLREKMNDTVDNPKYIKTVWGIGYKIEK 231 >gi|169824302|ref|YP_001691913.1| two-component response regulator [Finegoldia magna ATCC 29328] gi|302380572|ref|ZP_07269037.1| putative alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Finegoldia magna ACS-171-V-Col3] gi|303234059|ref|ZP_07320708.1| putative alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Finegoldia magna BVS033A4] gi|167831107|dbj|BAG08023.1| two-component response regulator [Finegoldia magna ATCC 29328] gi|302311515|gb|EFK93531.1| putative alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Finegoldia magna ACS-171-V-Col3] gi|302494984|gb|EFL54741.1| putative alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Finegoldia magna BVS033A4] Length = 229 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 42/224 (18%), Positives = 92/224 (41%), Gaps = 8/224 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L++D ++ +G + +S E L + DV+ ++ L G E Sbjct: 6 LLVEDEDNIRQFTKINLAREGFEILEADSGEKGVELAELNKPDVAVLDIML--PGIDGFE 63 Query: 63 LPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + +I+ + +I ++ ++ + G DD + KP + RE++ R+ ++ RR Sbjct: 64 VCKILRNKFPNIVIIMLTAKTQDNDKIEGLERGADDYLTKPFNPRELILRIKSVLRRSPQ 123 Query: 122 SNNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 N ++ R G+ L E I++ LM N GK + + ++ + Sbjct: 124 KQNNSQIIEDETFKLDMYSRTFYKNGKEITLTPTELSIIKLLMQNPGKAITRDELMDKAW 183 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 G D + +V+ ++ +LR K+ + + +GY + Sbjct: 184 GE-DFIGDAKIVDVNMRRLRSKIEEDSTHPKYIVTVWGVGYRWE 226 >gi|222053517|ref|YP_002535879.1| two component transcriptional regulator, winged helix family [Geobacter sp. FRC-32] gi|221562806|gb|ACM18778.1| two component transcriptional regulator, winged helix family [Geobacter sp. FRC-32] Length = 224 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 41/221 (18%), Positives = 90/221 (40%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D V ++ + E + D+ ++ L L Sbjct: 3 ILVVEDEKKVLSFIKRGLEEEQYEVVTAGDGEEGLKMAMEKNFDLLILDWML--PKMDGL 60 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + + +++ P++ ++ S++ + DSG DD + KP E+LARV A+ RR + Sbjct: 61 SVLKELKSQKNTTPVLMLTAKDSVEDIVAGLDSGSDDYLTKPFAFAELLARVRALLRRSE 120 Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 R+ + + L +E +LEY M N + + +T I ++ Sbjct: 121 QDRGAEIRFSDLRLDPVTHKVWRKDKEIDLTAKEYGLLEYFMRNPHEVLTRTMIAEHVWD 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + N+++ +++ LRKK+ + + R +GY + Sbjct: 181 -YTFDSFTNIIDVYVNYLRKKIDRDADKKLIHTVRGVGYIL 220 >gi|188589285|ref|YP_001922199.1| regulatory protein VanR [Clostridium botulinum E3 str. Alaska E43] gi|188499566|gb|ACD52702.1| regulatory protein VanR [Clostridium botulinum E3 str. Alaska E43] Length = 236 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 40/232 (17%), Positives = 82/232 (35%), Gaps = 15/232 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD ++D +G + E + D+ ++ ++ Sbjct: 8 LIVDDEKEIRDLVEIYLKSEGYLTVKACNGEEALNMIREQNVDLVILDVM--MPKLNGID 65 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----------REILAR 111 IR ++P+I +S + + G DD + KP + R Sbjct: 66 TCLKIREEREMPIIMLSAKSEDIDKILGLNMGADDYITKPFNPLELVARVKSQLRRFYKF 125 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 K N E + + + + + + L E IL L NRGK + Sbjct: 126 NTKHMEDEKEEENIIEIDELTINLETHEVILNNNLVKLTPTEFDILLLLAKNRGKVFSIE 185 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDW 222 I+ +++ + +N V HI K+R+K+ + + + +GY I+ Sbjct: 186 NIYESVWNQ-EFMSSDNTVMVHIRKIREKIESDPRTPKFIKTVWGVGYKIEK 236 >gi|145600097|ref|YP_001164173.1| phosphate regulon transcriptional regulatory protein [Yersinia pestis Pestoides F] gi|145211793|gb|ABP41200.1| phosphate regulon transcriptional regulatory protein [Yersinia pestis Pestoides F] Length = 229 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 38/224 (16%), Positives = 91/224 (40%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A +++ + +G + S D+ ++ L G + Sbjct: 5 ILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVARLSEPFPDLVLLDWML--PGGSGI 62 Query: 62 ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 + + ++ +P++ ++ + + + G DD + KP +E++AR+ A+ RR Sbjct: 63 QFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRR 122 Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + E + + + + E ++L + M + + ++ Q+ + Sbjct: 123 ISPMAVEEVIEMQGLSLDPSSHRVMANDQALDMGPTEFKLLHFFMTHPERVYSREQLLNY 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + VE+ V+ HI +LRK L V + R GY Sbjct: 183 VWGT-NVYVEDLTVDVHIRRLRKALETDGHDKMVQTVRGTGYRF 225 >gi|116334617|ref|YP_796144.1| DNA-binding response regulator [Lactobacillus brevis ATCC 367] gi|116099964|gb|ABJ65113.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus brevis ATCC 367] Length = 229 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 40/227 (17%), Positives = 88/227 (38%), Gaps = 9/227 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + ++G + + D++ + ++ + Sbjct: 3 ILVVDDDKEIAQLLEIYIKNEGYEPITAYNGKEALTKL-HTTPDIALMILDIMMPEMSGI 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + +R SQ+P++ +S + +G DD V KP + E++ARV ++ RR + Sbjct: 62 EVVKEVRKDSQIPILILSAKTGDMDKIQGLITGADDYVTKPFNPLEVMARVKSLLRRSQD 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEV------FPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + + + + L E IL L ++ + + +IF Sbjct: 122 QVTDDSPDILDIGTLTINKDSHEVKTIAGLTISLTALEFGILYLLASHPNRVFSADEIFE 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 ++ + V V H+S LR K+ G + + +GY I+ Sbjct: 182 RVW-RQESIVSAKTVMVHVSHLRDKIEEATNGEKVIQTVWGVGYKIE 227 >gi|297160739|gb|ADI10451.1| two component transcriptional regulator, winged helix family protein [Streptomyces bingchenggensis BCW-1] Length = 225 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 44/221 (19%), Positives = 84/221 (38%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A +++ +G ++E L ++ L G Sbjct: 3 ILVVEDDARLRELLKEGLEQEGFTVETAGDGRDGLALARGTEYAAIVLDVML--PGLSGY 60 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ +R P++ ++ D D G DD + KP + ++ARV A+ RR Sbjct: 61 QVCSRLREAGVWTPILMLTAKDGEYDEADGLDVGADDYLTKPFSYVVLIARVRALVRRGG 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEV-FPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + +G L +E +LE L G+ V+KT+I ++ Sbjct: 121 LDRPEVLELGDLRLEPTALACSRGNEGITLTAKEFAVLECLARRAGQVVSKTEIVHTVWD 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 N+VE +I LR+K+ G + + R GY + Sbjct: 181 TA-YEGGANLVEVYIRTLRRKIDVPYGRQAIRTIRGAGYLL 220 >gi|295108034|emb|CBL21987.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus obeum A2-162] Length = 257 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 31/222 (13%), Positives = 85/222 (38%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + DG + + D+ ++ L Sbjct: 31 ILIVEDDSFLNKMLAYNLTADGYGVTSALNARTAADAIRQREFDLVLLDINL--PDGNGF 88 Query: 62 ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH---REILARVAAIYR 117 EL ++I + +I ++ + ++ G D + KP + + + A+ Sbjct: 89 ELCKLIKPQYPDTIVIFLTANDQESDQIRGYEVGAVDYITKPFVIGALQRKIKAMFAMLE 148 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 K + + + G + + + + G+ L E ++L N + + + Q+ + Sbjct: 149 HHKPAKDIYDDGRLFLDFSEQTASLNGKPLTLSPMEYKMLNLFRKNPRQVLTRGQLLEKL 208 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 + + + V+E+ + + IS++R K+ + G + + +GY Sbjct: 209 WDIDERFVDEHTLTTSISRIRSKIESDGGAPYIKTVYGMGYQ 250 >gi|229161188|ref|ZP_04289175.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus R309803] gi|228622284|gb|EEK79123.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus R309803] Length = 227 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 43/224 (19%), Positives = 92/224 (41%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G E + ++ D+ ++ L L Sbjct: 5 ILIVEDEEKIARVVQLELEFEGYESEIAKTGTEAMEKFLNSSWDLILLDVML--PNISGL 62 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIY 116 E+ R +R ++ +P+I ++ S+ + D G D + KP I A + + Sbjct: 63 EVLRRVRLKNAVIPIILLTARDSVVDKVSGLDQGASDYITKPFQIEELLARIRACLRISH 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + + + R+ + V L RE +L +LM + + + + QI + Sbjct: 123 AIKEEEYSSFHIADLFLDEKTREVKRGNNVAELTPREFDLLHFLMKHENQVLNREQIVTN 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G FD + NVV+ +I LRKK+ + + + R +GY + Sbjct: 183 VWG-FDYYGDTNVVDVYIRYLRKKIDCNVDVPLIHTVRGVGYVL 225 >gi|220929136|ref|YP_002506045.1| transcriptional regulator [Clostridium cellulolyticum H10] gi|219999464|gb|ACL76065.1| two component transcriptional regulator, winged helix family [Clostridium cellulolyticum H10] Length = 234 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 42/227 (18%), Positives = 84/227 (37%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + +G + + + + D+ ++ L Sbjct: 8 ILVVDDETKITEVVKSYLEHEGYKVYTAFNGKQAMNGYNEFNPDLIILDLML--PDISGE 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-------ILARVAA 114 E+ + IR S VP+I ++ S + D G DD V KP ++ +L R Sbjct: 66 EICKRIRKISLVPIIMLTAKVSDDEVITGLDIGADDYVLKPFSPKQLLARVAAVLRRTVK 125 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 S + G + + + + G + L E RIL + K + ++ Sbjct: 126 ESSEDNKSKIIFDNGNLVIDTFVHEIRKAGSIINLTPNEYRILITMAGYPKKTFTREELI 185 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 S G D + V++HI LR+K+ + + + +GY Sbjct: 186 SMALG-DDFEGFDRTVDTHIKNLRQKIEDDPKAPKYLVTVHGVGYRF 231 >gi|158319439|ref|YP_001511946.1| two component transcriptional regulator [Alkaliphilus oremlandii OhILAs] gi|158139638|gb|ABW17950.1| two component transcriptional regulator, winged helix family [Alkaliphilus oremlandii OhILAs] Length = 231 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 40/228 (17%), Positives = 83/228 (36%), Gaps = 13/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD ++ ++ +E ++ E + D+ ++ L E Sbjct: 6 ILIIDDEESIRKLVRRSLINENYLIEEASNGEEALERLRNNTFDLIILDVVLG--DEDGF 63 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-------VA 113 EL + I+ P+I +S + G + + KP + A Sbjct: 64 ELIQEIKVLGIKTPIIFVSGRCEDHDQILGLGLGATNYITKPFSPAILCAHVKAQLRTSR 123 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 S+N GP + E L +E ++++ M N G+ K Q+ Sbjct: 124 EYVAEKTRSSNYIMEGPFKFDLKTYKLYKNNEFIELSSKENLLIKFFMENPGQVFTKEQL 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220 + I+ + +++N + +I +LRKKL + + + +GY Sbjct: 184 YENIWN--NSIIDDNAIMVYIHQLRKKLEDNVKSPKHIVTVWGIGYKF 229 >gi|324328720|gb|ADY23980.1| Two-component response regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 229 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 52/229 (22%), Positives = 90/229 (39%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++++ F + + + + D+ ++ L Sbjct: 5 ILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIML--PELDGW 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR-------EILARVAA 114 + R IR S+VP+I ++ TL F+ G DD V KP +L Sbjct: 63 SVCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKV 122 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + L+ ++ I V R V L E IL YLM N+G + + Q+ Sbjct: 123 TKQLLENEDDTLSIHGIHVHFPSRTVTVDKTDINLTHTEFEILAYLMKNQGIVLTREQLI 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 S I+G ++ A ++ V SHI LR KL K + + GY + N Sbjct: 183 SRIWG-YEFAGDDRTVNSHIRNLRNKLGEK--AKYITTVVRTGYKFEGN 228 >gi|291447797|ref|ZP_06587187.1| response regulator [Streptomyces roseosporus NRRL 15998] gi|291350744|gb|EFE77648.1| response regulator [Streptomyces roseosporus NRRL 15998] Length = 222 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 47/223 (21%), Positives = 93/223 (41%), Gaps = 10/223 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G +++ + S D+ ++ L G Sbjct: 5 LLIVEDEKRLAVSLARGLTAEGFAVDVVHDGLEGLHRASEGGYDLVILDIML--PGMNGY 62 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119 + +RA P++ ++ + D+G DD + KP + ++ARV A+ RR Sbjct: 63 RVCSNLRAAGHEVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARVRALLRRRG 122 Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + GP+R+ + R + L +E +LE L G+ V+K +I ++ Sbjct: 123 AGTAAPVLTVGPLRIDTAARRVIRGEDEIALTAKEFAVLEQLALRAGQVVSKAEILEHVW 182 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 F + N+VE +IS LR+KL + + R GY ++ Sbjct: 183 D-FAYDGDPNIVEVYISTLRRKLGAAT----IRTVRGAGYRLE 220 >gi|182436923|ref|YP_001824642.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|178465439|dbj|BAG19959.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] Length = 238 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 51/234 (21%), Positives = 100/234 (42%), Gaps = 19/234 (8%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA---REDVSAIEAFLIGKGEK 59 +LI+D A V+DG + G +E + E L + R +++ ++ L G Sbjct: 5 LLIEDDASVRDGMELVLRRHGYGVETAATGEQALALLAGERGARVELAVLDLML--PGMD 62 Query: 60 VLELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 E+ R IRA ++P+I ++ + + ++G DD V KP+ + AR+ A RR Sbjct: 63 GFEVCRRIRARAPKLPVIMLTARGDDRDIVAGLEAGADDYVVKPVTAPVLEARIRAALRR 122 Query: 119 LKVSNNR-----------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167 + + + + + G G LP E R+L L A+ G+ Sbjct: 123 AEPYPRQGPAGQAPDADRTDHAGLVIDRAGLTVTKHGAAIALPPTELRVLLELSASPGRV 182 Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 + + Q+ ++++ + +V++ + +LR K+ + V + R GY Sbjct: 183 LTREQLLASVWD-HSFLGDSRLVDAAVGRLRAKIEDLPARPRYVQTVRGFGYRF 235 >gi|126664628|ref|ZP_01735612.1| two-component response regulator PhoB [Marinobacter sp. ELB17] gi|126630954|gb|EBA01568.1| two-component response regulator PhoB [Marinobacter sp. ELB17] Length = 230 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 42/224 (18%), Positives = 88/224 (39%), Gaps = 9/224 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + G + L R D+ ++ L G + Sbjct: 6 ILIVDDESAICEMVTVALEMAGYVCLQAADAKAAHTLIVDKRPDLILLDWML--PGTSGI 63 Query: 62 ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIY 116 EL R ++ +P+I ++ + +SG DD + KP RE+ + Sbjct: 64 ELARRLKKDDTTAAIPIIMLTAKVEEDNKILGLESGADDYITKPFSPRELLARLKAVLRR 123 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 ++ E G + + Q L E R+L++ M+++ + +++Q+ Sbjct: 124 STPAGVDSALEVGGLTLDPLSHRVSSQFGQLELGPTEYRMLQFFMSHQDRVYSRSQLLDQ 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + ++E V+ HI +LRK L + + R GY Sbjct: 184 VWGA-NVYLDERTVDVHIRRLRKALGTHHDH-LIQTVRGAGYRF 225 >gi|322517438|ref|ZP_08070311.1| DNA-binding response regulator [Streptococcus vestibularis ATCC 49124] gi|322123920|gb|EFX95479.1| DNA-binding response regulator [Streptococcus vestibularis ATCC 49124] Length = 229 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 37/225 (16%), Positives = 84/225 (37%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G + ++ + D+ ++ L Sbjct: 5 ILIVEDERNLARFVSLELQHEGYDVVTADNGREGLEMALEKDFDLILLDLML--PEMDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI------HHREILARVAAI 115 E+ R ++ ++ ++ S+ + D G DD + KP R I Sbjct: 63 EVTRRLQQEKNTYIMMMTARDSIMDIVAGLDRGADDYIVKPFAIEELLARIRATFRRQDI 122 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + +++ R E PL +RE +L L++N + + + ++ Sbjct: 123 EATKNAPAKASTYRDLKLDVQNRAVIRGDEAIPLTKREFDLLNTLLSNMNQVMTREELLL 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +D+ +E NVV+ +I LR K+ + + R +GY I Sbjct: 183 QVW-KYDDVIETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 226 >gi|291448820|ref|ZP_06588210.1| response regulator mprA [Streptomyces roseosporus NRRL 15998] gi|291351767|gb|EFE78671.1| response regulator mprA [Streptomyces roseosporus NRRL 15998] Length = 228 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 44/224 (19%), Positives = 86/224 (38%), Gaps = 6/224 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ +D V+ +G + G ++ D ++ L Sbjct: 7 ILVAEDEPDVRAAVEDGLSVEGYEVRGVGDGLAALSAVTAWEPDALVLDVM--MPALDGL 64 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118 + R +RA + P++ ++ S+ +D ++G DD + KP E++ARV A Sbjct: 65 AVCRRLRAMEDRTPVLVLTALSSVSERVDGLEAGADDYLVKPFALDELVARVRALLRRAA 124 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + + R G R E +LE L+ + G+ +A+ I ++ Sbjct: 125 PPAPDEDLAFADLTLDPVTRTGRRGGRPVEFSRTEAALLELLLRHPGQVLAREVILERVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 G D + N + ++ LR+KL V + LGY +D Sbjct: 185 GQ-DFGPDSNSLAVYVGYLRRKLEAGGEPRLVHTVHGLGYRLDV 227 >gi|228908966|ref|ZP_04072796.1| Two-component response regulator [Bacillus thuringiensis IBL 200] gi|228850688|gb|EEM95512.1| Two-component response regulator [Bacillus thuringiensis IBL 200] Length = 228 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 50/227 (22%), Positives = 92/227 (40%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ ++G+ + L D+ ++ + Sbjct: 5 ILIVDDDKEIRNLISVYLENEGLKTQKAEDAIQALQLLEEKEFDLIILDIM--MPNMDGI 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E IR +P+I +S + SG DD ++KP + E++ARV + RR K Sbjct: 63 EACMKIREDRNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 122 Query: 122 SNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N E V +D V+G+ L +E ILE L N+G ++ +I+ Sbjct: 123 YNTSIEHNKSILEIGDLTVNTDTCQVWVRGKETRLTPKEFAILELLARNKGVVLSVAKIY 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220 A++ +N V HI+K+R K+ + + +GY I Sbjct: 183 EAVWKEV-FYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGYKI 228 >gi|228941999|ref|ZP_04104542.1| Two-component response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228974930|ref|ZP_04135491.1| Two-component response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981523|ref|ZP_04141820.1| Two-component response regulator [Bacillus thuringiensis Bt407] gi|228778202|gb|EEM26472.1| Two-component response regulator [Bacillus thuringiensis Bt407] gi|228784783|gb|EEM32801.1| Two-component response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228817668|gb|EEM63750.1| Two-component response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326942601|gb|AEA18497.1| two-component response regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 229 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 50/229 (21%), Positives = 89/229 (38%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++++ F + + + + D+ ++ L Sbjct: 5 ILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIML--PELDGW 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR-------EILARVAA 114 + R IR S+VP+I ++ TL F+ G +D V KP +L Sbjct: 63 SVCRRIRKTSEVPIIMLTARVDEDDTLLGFELGANDYVTKPYSPPILLARAKRLLESRKV 122 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + L+ ++ I V R V L E IL Y M N+G + + Q+ Sbjct: 123 TKQLLENEDDTLSIHDIHVHFPSRTVTVNRTDINLTHTEFEILAYFMKNQGIVLTREQLI 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 S I+G ++ A ++ V SHI LR KL K + + GY + N Sbjct: 183 SRIWG-YEFAGDDRTVNSHIRNLRNKLGEK--AKYITTVVRTGYKFEGN 228 >gi|150015325|ref|YP_001307579.1| two component transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149901790|gb|ABR32623.1| two component transcriptional regulator, winged helix family [Clostridium beijerinckii NCIMB 8052] Length = 231 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 38/225 (16%), Positives = 95/225 (42%), Gaps = 8/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D +++ + + + + + + D+ ++ + Sbjct: 3 ILIVEDERDIRNLISLHMRKENYEVYEASDGREALNIFENEKIDLILLDIM--MPNVDGI 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117 + + +RA S +P+I I+ + + G DD + KPI + + + Y+ Sbjct: 61 SVIQKVRAISTIPIICITAMGNDSDKVLALGLGADDYLVKPISPIELSARVASNLRRCYK 120 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + TG +++F++ + L +E +IL+ L++N GK K QI+ + Sbjct: 121 YAEHKDIIYSTGELKLFTETFEVYKGNRKIDLNPKEFKILKLLVSNLGKVFTKKQIYEEV 180 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 + + N + H+S +R+K+ + + + R +GY I+ Sbjct: 181 W-EEAYFGDSNNIMVHLSHIREKIEDDPKNPIYIKTIRGIGYKIE 224 >gi|229193098|ref|ZP_04320053.1| Two-component response regulator [Bacillus cereus ATCC 10876] gi|228590362|gb|EEK48226.1| Two-component response regulator [Bacillus cereus ATCC 10876] Length = 229 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 52/229 (22%), Positives = 90/229 (39%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++++ F + + + + D+ ++ L Sbjct: 5 ILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIML--PELDGW 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR-------EILARVAA 114 + R IR S+VP+I ++ TL F+ G DD V KP +L A Sbjct: 63 SVCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKA 122 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + L+ ++ I V R V L E IL Y M N+G + + Q+ Sbjct: 123 SKKPLENEDDTLSIHGIHVHFPSRTVTVDEADVSLTHTEFEILVYFMKNQGIVLTREQLI 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 S I+G ++ A ++ V SHI LR KL K + + GY + N Sbjct: 183 SRIWG-YEFAGDDRTVNSHIRNLRNKLGEK--AKYIITVVRTGYKFEGN 228 >gi|226356929|ref|YP_002786669.1| response regulator OmpR [Deinococcus deserti VCD115] gi|226318919|gb|ACO46915.1| putative response regulator, OmpR [Deinococcus deserti VCD115] Length = 222 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 44/219 (20%), Positives = 88/219 (40%), Gaps = 4/219 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D + G + D+ ++ L Sbjct: 5 ILLIEDNPDITRVVQYELEQAGYRVLTAADGITGLTSAREHAPDLVVLDLGL--PDFDGA 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R S VP+I ++ ++ ++ ++G DD + KP H E++ARV R + Sbjct: 63 EVARRLRKTSSVPIIILTAMDAVDRKVNLLEAGADDYMTKPFHPEELVARVKVQLRHQQH 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + R G L +E +L +L G+ ++ +I ++ Sbjct: 123 GEVISIGALEIH-PQKRLCHYNGHEVRLSPKEFDLLTFLARQPGRVYSRQEIEREVW-NG 180 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + NVV+ H++ +R KLR+ G+ + + R +GY++ Sbjct: 181 ELPSNSNVVDVHMANMRAKLRDLDGYGIIRTVRGIGYAL 219 >gi|223984150|ref|ZP_03634301.1| hypothetical protein HOLDEFILI_01594 [Holdemania filiformis DSM 12042] gi|223963882|gb|EEF68243.1| hypothetical protein HOLDEFILI_01594 [Holdemania filiformis DSM 12042] Length = 231 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 45/229 (19%), Positives = 91/229 (39%), Gaps = 10/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + + + + + ++ + Sbjct: 6 ILVVDDDHEIADAIEIYLKSEGYEIFKAYNGLEALEILNQQKIHCILMDVM--MPKMDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + IR S +P+I +S + + G DD + KP + E++ARV + RR Sbjct: 64 QAIMHIRETSNIPIIILSAKSEDMDKVLGLNIGADDYITKPFNPLEMIARVKSQLRRYMQ 123 Query: 122 SNNRAETGPIR------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 AETG + + + + ++GE + E RILE + N + + +I+ Sbjct: 124 LGATAETGTVIEVGGLSIDLEAKTVTLEGEPVKVTPIEYRILELFLTNLNRVFSIDEIYE 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223 ++ EN V HI ++R+K+ + + +GY I+ N Sbjct: 184 RVWNETSFQ-SENTVAVHIRRIREKIEIDPKNPRYIKVVWGIGYKIEKN 231 >gi|165869837|ref|ZP_02214495.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|254754585|ref|ZP_05206620.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|164714666|gb|EDR20185.1| DNA-binding response regulator [Bacillus anthracis str. A0488] Length = 227 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 44/227 (19%), Positives = 87/227 (38%), Gaps = 9/227 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D + + + ++ +S E + D+ ++ L Sbjct: 4 ILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDYDLIILDIML--PKMNGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IRA +P++ +S + G DD + KP E++ARV A R + Sbjct: 62 EICKQIRAIKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYER 121 Query: 122 SNNRAETGPIRVFSDGRDPEV-----QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 ++ G + + + +L + + N + + K Q+F Sbjct: 122 LLGNVSKQRDTLYIHGISIDQRARKVFINNEEIAFTTKDLLTFFVTNPNQVLNKEQLFER 181 Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 I+GL D A + V HI KLR+K+ + +++ GY + Sbjct: 182 IWGL-DSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRFNV 227 >gi|113868407|ref|YP_726896.1| response regulator [Ralstonia eutropha H16] gi|113527183|emb|CAJ93528.1| response regulator, phosphate regulon transcriptional regulator PhoB, OmpR-family [Ralstonia eutropha H16] Length = 235 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 44/226 (19%), Positives = 83/226 (36%), Gaps = 8/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++++D + + G + E L S D+ ++ L G G Sbjct: 5 ILVVEDEPAIAELIAVNLQHAGHYPIRAYNAEQALSLMSDVLPDLVLLDWMLPGKSGANF 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAA 114 + R Q+P+I ++ Q + ++G DD V KP +E+ + R A Sbjct: 65 AKELRANDRTRQIPIIMLTARGEEQDKVMGLEAGADDYVTKPFSPKELLARIKAVLRRRA 124 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 V + L E R+L +LM + + +++Q+ Sbjct: 125 PQLTDDVVAINGLRLDPATHRVTGQDDSGAIKLELGPTEFRLLHFLMTHPERVHSRSQLL 184 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G VEE V+ HI +LR L + +++ R GY + Sbjct: 185 DQVWGDH-VFVEERTVDVHIKRLRAALTPGGYSNMIETVRGSGYRL 229 >gi|253579795|ref|ZP_04857063.1| two-component system response regulator [Ruminococcus sp. 5_1_39B_FAA] gi|251848794|gb|EES76756.1| two-component system response regulator [Ruminococcus sp. 5_1_39BFAA] Length = 230 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 40/228 (17%), Positives = 87/228 (38%), Gaps = 10/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD + + + + N+ + + ++ G Sbjct: 4 ILIIDDDRELCALIKRSVQAENIEADFCNTGKEGLQKLREQEYQLVVLDVM--MPGMDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL------ARVAAI 115 E IR + +P++ + + + +G DD + KP E++ R Sbjct: 62 ETLEEIRKENSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRRYTR 121 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + + + +++ + R F LP +E +L Y ++GK + K QI+ Sbjct: 122 FNQQAGAIQKLNFDGLQIDLENRSVTTSNGTFELPPKEFDLLLYCAKHQGKILTKQQIYE 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 ++G + N + + IS+LRKKL N + + + +GY + Sbjct: 182 EVWGEEYFYDDSN-IMAIISRLRKKLEVNPSSPKYIQTVKGIGYRFNK 228 >gi|228959449|ref|ZP_04121138.1| DNA-binding response regulator [Bacillus thuringiensis serovar pakistani str. T13001] gi|228800225|gb|EEM47153.1| DNA-binding response regulator [Bacillus thuringiensis serovar pakistani str. T13001] Length = 225 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 42/221 (19%), Positives = 93/221 (42%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L DD +++ +G + + + + ++ ++ Sbjct: 6 ILLADDDKHIRELLHYHLQKEGFKVFEAEDGKVAQDVLEKENIHLAIVDIM--MPFVDGY 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L IR + +P+I ++ L F SG DD + KP E++ R+ A+ RR ++ Sbjct: 64 TLCEEIRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQM 123 Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + T + G + + G+ LP +E +L L + G+ ++ ++ ++G+ Sbjct: 124 LSADIITLHRTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM 183 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D +E V+ H+ +LR + + + + R LGY ++ Sbjct: 184 -DFEGDERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 223 >gi|160879116|ref|YP_001558084.1| two component transcriptional regulator [Clostridium phytofermentans ISDg] gi|160427782|gb|ABX41345.1| two component transcriptional regulator, winged helix family [Clostridium phytofermentans ISDg] Length = 225 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 48/224 (21%), Positives = 85/224 (37%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + ++ S L D+ ++ L Sbjct: 5 ILIVDDDKDISELIAVYLKSEDYYVDKACSGLEALQLIKENNFDLVILDIM--MPKMDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E IR +P+I ++ + G DD ++KP E++ARV A RR + Sbjct: 63 ETLIHIRKDFNMPIIFLTAKNQEIDLIRGLSLGADDYISKPFSSMELIARVKAQLRRYTI 122 Query: 122 SNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 NN D V G+ L E +ILE N+ + QI+ I Sbjct: 123 FNNLDNNDISIGELVLSLDMHRVTVAGKEVKLTPTEYKILELFCRNKNIVFSVEQIYENI 182 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + AV + + HI+KLR+K+ + + + + +GY I Sbjct: 183 W-RDKFAVGDTSIMVHITKLRQKIEKDPKNPEYIKTVWGVGYKI 225 >gi|47570221|ref|ZP_00240874.1| DNA-binding response regulator [Bacillus cereus G9241] gi|52142938|ref|YP_083891.1| DNA-binding response regulator [Bacillus cereus E33L] gi|228985668|ref|ZP_04145821.1| Sensor histidine kinase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229156150|ref|ZP_04284248.1| Sensor histidine kinase [Bacillus cereus ATCC 4342] gi|229196733|ref|ZP_04323476.1| Sensor histidine kinase [Bacillus cereus m1293] gi|301054096|ref|YP_003792307.1| DNA-binding response regulator [Bacillus anthracis CI] gi|47553127|gb|EAL11525.1| DNA-binding response regulator [Bacillus cereus G9241] gi|51976407|gb|AAU17957.1| DNA-binding response regulator [Bacillus cereus E33L] gi|228586808|gb|EEK44883.1| Sensor histidine kinase [Bacillus cereus m1293] gi|228627333|gb|EEK84062.1| Sensor histidine kinase [Bacillus cereus ATCC 4342] gi|228774063|gb|EEM22476.1| Sensor histidine kinase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|300376265|gb|ADK05169.1| DNA-binding response regulator [Bacillus cereus biovar anthracis str. CI] Length = 231 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 44/230 (19%), Positives = 84/230 (36%), Gaps = 12/230 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD + + ++G ++ + + S+ D+ ++ L Sbjct: 5 ILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQMISTYEVDLMILDIM--MPKRNGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARVA 113 E+ + +R ++ VP++ +S + +G DD + KP + E + Sbjct: 63 EVCQEVRENNTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSF 122 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 K + + +V GE L E IL L +N G+ + +I Sbjct: 123 QNATSQKNEDGMIRIRSAEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEI 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222 F ++ D V HIS LR KL G + + +GY I+ Sbjct: 183 FERVWNE-DGYGSNKTVMVHISNLRDKLETGMNGEKFIHTVWGVGYKIEK 231 >gi|315648817|ref|ZP_07901912.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] gi|315275785|gb|EFU39137.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] Length = 239 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 41/232 (17%), Positives = 87/232 (37%), Gaps = 14/232 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++I+D + +G +E ++ D+ ++ L G + Sbjct: 2 LVIEDEPTLSRLLSYNLTQEGFQVEVEEHGTAGYEKAANHEYDLILLDVML--PGMNGFQ 59 Query: 63 LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH----------REILAR 111 + +R + P+I ++ + + + G DD + KP ++ Sbjct: 60 ILEKLRGSGITTPIIILTAKNAEEEVVQGLKMGADDYITKPFGVSELLARVSAVMRRVSG 119 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + N G + ++ + + + G+ L +E +L YL G + + Sbjct: 120 HVEEVKTPDQQGNVISLGQLEIYPEKYEVRLGGQSINLRPKEFEVLLYLAKKPGVVLTRD 179 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 + + ++G FD + V+ H+S LRKKL +DS R +GY + N Sbjct: 180 DLMNVVWG-FDYIGGQRTVDVHVSSLRKKLELDPESVHIDSIRGVGYKLVVN 230 >gi|239995182|ref|ZP_04715706.1| putative DNA-binding response regulator PhoB [Alteromonas macleodii ATCC 27126] Length = 229 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 36/223 (16%), Positives = 87/223 (39%), Gaps = 8/223 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D A +++ + G ++ + + D+ ++ L G ++ Sbjct: 6 LVVEDEAPIREMLKFVLEQSGFNIIEAEDFDIAQEKICEPYPDLILLDWML--PGGSGVQ 63 Query: 63 LPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYR 117 L + ++ H +P+I ++ + + D+G DD V KP +E+ + Sbjct: 64 LAKSLKQHEFTRDIPVIMLTARGEEEDKIRGLDAGADDYVTKPFSPKELVARIKAVMRRV 123 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 S E +++ E + E ++L + M + + ++ + + Sbjct: 124 TPTSSEEPIEFNGLKLEPVSHRVMANEEPLDMGPTEFKLLHFFMTHPERVYSRELLLDNV 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G + VE+ V+ HI +LRK + + + R GY Sbjct: 184 WGT-NVYVEDRTVDVHIRRLRKAISRHGHDAMIQTVRGAGYRF 225 >gi|229147384|ref|ZP_04275733.1| Two-component response regulator [Bacillus cereus BDRD-ST24] gi|296505274|ref|YP_003666974.1| two-component response regulator [Bacillus thuringiensis BMB171] gi|228636066|gb|EEK92547.1| Two-component response regulator [Bacillus cereus BDRD-ST24] gi|296326326|gb|ADH09254.1| two-component response regulator [Bacillus thuringiensis BMB171] Length = 229 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 52/229 (22%), Positives = 90/229 (39%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++++ F + + + + D+ ++ L Sbjct: 5 ILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIML--PELDGW 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR-------EILARVAA 114 + R IR S+VP+I ++ TL F+ G DD V KP +L A Sbjct: 63 SVCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKA 122 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + L+ ++ I V R V L E IL Y M N+G + + Q+ Sbjct: 123 SKKPLENEDDTLSIHGIHVHFPSRTVTVDEADVSLTHTEFEILVYFMKNQGIVLTREQLI 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 S I+G ++ A ++ V SHI LR KL K + + GY + N Sbjct: 183 SRIWG-YEFAGDDRTVNSHIRNLRNKLGEK--AKYITTVVRTGYKFEGN 228 >gi|326800502|ref|YP_004318321.1| two component transcriptional regulator, winged helix family [Sphingobacterium sp. 21] gi|326551266|gb|ADZ79651.1| two component transcriptional regulator, winged helix family [Sphingobacterium sp. 21] Length = 228 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 42/225 (18%), Positives = 87/225 (38%), Gaps = 10/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 +++DD + + +G S+ + + D+ ++ + G + Sbjct: 8 ILVVDDEPDIVELIEYNLKREGYSVFTATNGQEAVSTARKINPDLIILDIMMPKMDGIEA 67 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R + ++ ++ + + F+ G DD + KPI R +++R+ AI RR Sbjct: 68 CRIMRSMPEFKNTFMVFLTARSEEYSEIAGFNVGADDYIAKPIKPRALISRINAILRRNS 127 Query: 121 VSNNRAETGPIR----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 E + + E L ++E +L L + GK + I + Sbjct: 128 KGEETLENKVEIADLVIDRETFLVYKNDEKIVLAKKEFELLYLLASKPGKVYTRETILKS 187 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 I+ V ++ HI KLR+K+ + D V + + +GY D Sbjct: 188 IW-EDSVVVTNRTIDVHIRKLREKIGD----DYVSTVKGVGYKFD 227 >gi|209524098|ref|ZP_03272649.1| two component transcriptional regulator, winged helix family [Arthrospira maxima CS-328] gi|209495473|gb|EDZ95777.1| two component transcriptional regulator, winged helix family [Arthrospira maxima CS-328] Length = 230 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 42/224 (18%), Positives = 90/224 (40%), Gaps = 12/224 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ +D + G + NS + S D+ ++ L Sbjct: 4 ILIAEDEPRIAAFLEKGLRASGFTTAIANSGQDVLEQACSHNFDLLILDLGL--PDRDGF 61 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH----REILARVAAIY 116 ++ + +R + P+I ++ L + ++G DD V KP + AR+ Sbjct: 62 QILKELRGQGETLPIIILTARDDLSDKVAGLEAGADDYVTKPFRFAELLARVRARLRNQP 121 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + T I + R+ +V L +E +LE + + + +++ Q+ Sbjct: 122 SKNADDDKTLSTANICLNLYTREVQVADRTLQLSAKEFLLLETFLRHPEQVLSREQLLDQ 181 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G +D N+V+ ++ LRKKL G D +++ R +GY + Sbjct: 182 VWG-YDYDPGSNIVDVYVGYLRKKL----GSDRIETVRGMGYRL 220 >gi|227876375|ref|ZP_03994487.1| response regulator [Mobiluncus mulieris ATCC 35243] gi|306817267|ref|ZP_07451013.1| response regulator [Mobiluncus mulieris ATCC 35239] gi|227842916|gb|EEJ53113.1| response regulator [Mobiluncus mulieris ATCC 35243] gi|304649947|gb|EFM47226.1| response regulator [Mobiluncus mulieris ATCC 35239] Length = 241 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 53/232 (22%), Positives = 105/232 (45%), Gaps = 13/232 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++D + G + L ++ + D+ ++ L Sbjct: 12 LLVVDDEPNIRDLLASSLRFAGYEVFSAGDGTEALRLATTEKPDLVILDVML--PDMDGF 69 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R +RA +P++ ++ ++ ++ +G DD V KP E++AR+ AI RR K Sbjct: 70 TVTRKLRAAGIDMPILFLTAKDDMRDKVEGLQAGGDDYVTKPFGLEEVVARINAILRRTK 129 Query: 121 VSNNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 ++ + + + G++ L E ++L YLM N G+ V+K+QI + Sbjct: 130 HGSSEQPLLRVADLELDDNLYEVHRNGKLIDLSPTEFKLLRYLMVNEGRVVSKSQILDHV 189 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-----FDPVDSKRFLGYSI-DWN 223 + +D + +VES+IS LR+KL + ++R +GY + D N Sbjct: 190 W-EYDWEGDAAIVESYISYLRRKLDVPDEHGNIPPSLIQTRRGVGYLLRDPN 240 >gi|163942544|ref|YP_001647428.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163864741|gb|ABY45800.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] Length = 229 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 53/229 (23%), Positives = 89/229 (38%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++++ F + + + L D+ ++ L Sbjct: 5 ILIVEDEDILREILKDYFLSEQYKVLEARDGKEALVLFEEEEVDLVILDIML--PELDGW 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR-------EILARVAA 114 + R IR S VP+I ++ TL F+ G DD V KP +L A Sbjct: 63 SVCRRIRKTSGVPIIMLTARVDEDDTLLGFELGADDYVAKPYSPPILLARAKRLLESRQA 122 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + L+ ++ I V R V L E IL Y M N+G + + Q+ Sbjct: 123 SKKPLENEDDTLSIHGIHVHFPSRTVTVDEADITLTHTEFEILAYFMKNQGIVLTREQLI 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 S I+G ++ A ++ V SHI LR KL K + + GY + N Sbjct: 183 SRIWG-YEFAGDDRTVNSHIRNLRNKLGEKS--KHITTVVRTGYKFEGN 228 >gi|229075211|ref|ZP_04208205.1| DNA-binding response regulator [Bacillus cereus Rock4-18] gi|228707988|gb|EEL60167.1| DNA-binding response regulator [Bacillus cereus Rock4-18] Length = 225 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 42/221 (19%), Positives = 93/221 (42%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L DD +++ +G + + + + ++ ++ Sbjct: 6 ILLADDDKHIRELLHYHLQKEGFKVFEAEDGKVAQDVLEKENIHLAIVDIM--MPFVDGY 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L IR + +P+I ++ L F SG DD + KP E++ R+ A+ RR ++ Sbjct: 64 TLCEEIRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQM 123 Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + T + G + + G+ LP +E +L L + G+ ++ ++ ++G+ Sbjct: 124 LSADIITLHGTTIDRKGVEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM 183 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D +E V+ H+ +LR + + + + R LGY ++ Sbjct: 184 -DFEGDERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 223 >gi|283797521|ref|ZP_06346674.1| transcriptional activator protein Irlr [Clostridium sp. M62/1] gi|291074890|gb|EFE12254.1| transcriptional activator protein Irlr [Clostridium sp. M62/1] Length = 223 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 44/221 (19%), Positives = 93/221 (42%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 + +D +++ + +G ++G S DV ++ G L Sbjct: 3 ILFAEDEPALREVTVKRLKAEGFGVDGCRDGREALDYLDSTDYDVVILDIM--MPGIDGL 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R +R+ P++ ++ ++ + D+G DD + KP E+ AR+ A+ RR Sbjct: 61 TVLRTLRSRGNTAPVMLLTARDAVADRVGGLDAGADDYLTKPFEFAELTARIRALLRRNS 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQ-GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + + G L RE +LE L+ ++G +++TQ+ + ++ Sbjct: 121 DNKTDTASVADLTVEFSTRKVTRGGVEISLSSREFALLESLIRHKGAILSRTQLENQVWD 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 F N+V+ +I LRKK+ + + + R GY++ Sbjct: 181 -FGFEGGSNIVDVYIRYLRKKIDDPFEKKLIHTVRGAGYTL 220 >gi|167754915|ref|ZP_02427042.1| hypothetical protein CLORAM_00419 [Clostridium ramosum DSM 1402] gi|237735356|ref|ZP_04565837.1| two-component system response regulator [Mollicutes bacterium D7] gi|167704965|gb|EDS19544.1| hypothetical protein CLORAM_00419 [Clostridium ramosum DSM 1402] gi|229381101|gb|EEO31192.1| two-component system response regulator [Coprobacillus sp. D7] Length = 233 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 37/229 (16%), Positives = 80/229 (34%), Gaps = 14/229 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ L +G + + + S D+ ++ Sbjct: 6 ILIVDDNPEIREVLNVLLSSEGYDVIEAKDGQEAIDMVSD---DIDLYILDIMMPIINGY 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILAR 111 + IR S P++ ++ F SG DD ++KP + Sbjct: 63 QACVEIRKKSNAPILFLTAKGQESDKTLGFSSGGDDYLSKPFSYNELTTRVKALLRRYYV 122 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + + +++ I + + + GE L E +IL L++NR + + Sbjct: 123 YQGKMEKEENNDDNIVYNNITINPNSEAVYLNGEQIELTYLEYQILYLLLSNRKRIFSTQ 182 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219 ++ +I+ N + HI LRKK+ + + + GY Sbjct: 183 TLYESIWNEPYYYSANNTIMVHIRNLRKKIESDPQNPKIIKTIWGKGYR 231 >gi|297583440|ref|YP_003699220.1| winged helix family two component transcriptional regulator [Bacillus selenitireducens MLS10] gi|297141897|gb|ADH98654.1| two component transcriptional regulator, winged helix family [Bacillus selenitireducens MLS10] Length = 238 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 40/231 (17%), Positives = 88/231 (38%), Gaps = 16/231 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD +++ + ++G + + ++ E Sbjct: 9 LIVDDEEQMREMIRNILTNEGYHVLEAADGFEAIQRIEYHKIHFVILDVM--MPKLDGYE 66 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 I+R S +P++ ++ +D +G DD + KP E+LAR+ AI RR Sbjct: 67 TLDILRKQSGLPVLMLTAKSEESDKVDGLRAGADDYLTKPFGRNELLARMEAILRRSDAY 126 Query: 123 NNRAETGPIRVFSDGRDPEV------------QGEVFPLPRRERRILEYLMANRGKRVAK 170 N + ++ L ++E +LE + + + ++ Sbjct: 127 PNIGQAQTSSSDDGQYSFDIITLNTRSKKVTVNKNPVSLTKKEFEMLELFIRHPEQVFSR 186 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 Q+ AI+G+ + V++H+ LR KLR+ + + +GY ++ Sbjct: 187 EQLLEAIWGMDYLSASSRTVDTHVKTLRLKLRDASAH--IQTVWGIGYKLE 235 >gi|157691146|ref|YP_001485608.1| response regulator [Bacillus pumilus SAFR-032] gi|157679904|gb|ABV61048.1| response regulator [Bacillus pumilus SAFR-032] Length = 227 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 43/228 (18%), Positives = 89/228 (39%), Gaps = 9/228 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D V F +G E + + D + ++ L Sbjct: 3 ILMIEDNQSVCTMTEMFFQREGFQAEFVHDGQDGLNRFKQED-DWDLLILDIMLPSMDGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + +R S VP+I ++ + + FD G DD V KP ++AR+ A+ RR Sbjct: 62 TICQKVRQISDVPIIMLTAKETESDQVLGFDLGADDYVTKPFSPLTLMARIKAVKRRFTQ 121 Query: 122 SNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + E + + L +E +L + + + + ++ Q+ Sbjct: 122 TTIQKEDERLATAHFLLDKKTREVFLDGEPIENLTPKEYDLLCFFIQHPRQVFSREQLLE 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 I+G + +E V+ HI +LR+K+ + + + +GY D + Sbjct: 182 QIWG-YQFYGDERTVDVHIKRLRQKIGDGPKP-FLYTVWGVGYKFDED 227 >gi|22125369|ref|NP_668792.1| response regulator [Yersinia pestis KIM 10] gi|45442409|ref|NP_993948.1| putative response regulator [Yersinia pestis biovar Microtus str. 91001] gi|51597048|ref|YP_071239.1| two-component response regulator [Yersinia pseudotuberculosis IP 32953] gi|108808192|ref|YP_652108.1| putative two-component response regulator [Yersinia pestis Antiqua] gi|108811537|ref|YP_647304.1| two-component response regulator [Yersinia pestis Nepal516] gi|145599392|ref|YP_001163468.1| two-component response regulator [Yersinia pestis Pestoides F] gi|153946864|ref|YP_001400283.1| DNA-binding response regulator [Yersinia pseudotuberculosis IP 31758] gi|162418219|ref|YP_001607153.1| DNA-binding response regulator [Yersinia pestis Angola] gi|166011234|ref|ZP_02232132.1| DNA-binding response regulator [Yersinia pestis biovar Antiqua str. E1979001] gi|166212492|ref|ZP_02238527.1| DNA-binding response regulator [Yersinia pestis biovar Antiqua str. B42003004] gi|167399427|ref|ZP_02304951.1| DNA-binding response regulator [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167424627|ref|ZP_02316380.1| DNA-binding response regulator [Yersinia pestis biovar Mediaevalis str. K1973002] gi|186896131|ref|YP_001873243.1| two component transcriptional regulator [Yersinia pseudotuberculosis PB1/+] gi|229895670|ref|ZP_04510841.1| putative two-component response regulator [Yersinia pestis Pestoides A] gi|229901804|ref|ZP_04516926.1| putative two-component response regulator [Yersinia pestis Nepal516] gi|270489994|ref|ZP_06207068.1| response regulator receiver domain protein [Yersinia pestis KIM D27] gi|294504760|ref|YP_003568822.1| response regulator [Yersinia pestis Z176003] gi|21958252|gb|AAM85043.1|AE013750_3 putative response regulator [Yersinia pestis KIM 10] gi|45437274|gb|AAS62825.1| putative response regulator [Yersinia pestis biovar Microtus str. 91001] gi|51590330|emb|CAH21967.1| putative two-component response regulator [Yersinia pseudotuberculosis IP 32953] gi|108775185|gb|ABG17704.1| two-component response regulator [Yersinia pestis Nepal516] gi|108780105|gb|ABG14163.1| putative two-component response regulator [Yersinia pestis Antiqua] gi|145211088|gb|ABP40495.1| two-component response regulator [Yersinia pestis Pestoides F] gi|152958359|gb|ABS45820.1| DNA-binding response regulator [Yersinia pseudotuberculosis IP 31758] gi|162351034|gb|ABX84982.1| DNA-binding response regulator [Yersinia pestis Angola] gi|165989912|gb|EDR42213.1| DNA-binding response regulator [Yersinia pestis biovar Antiqua str. E1979001] gi|166206423|gb|EDR50903.1| DNA-binding response regulator [Yersinia pestis biovar Antiqua str. B42003004] gi|167051931|gb|EDR63339.1| DNA-binding response regulator [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167056509|gb|EDR66278.1| DNA-binding response regulator [Yersinia pestis biovar Mediaevalis str. K1973002] gi|186699157|gb|ACC89786.1| two component transcriptional regulator, winged helix family [Yersinia pseudotuberculosis PB1/+] gi|229681733|gb|EEO77827.1| putative two-component response regulator [Yersinia pestis Nepal516] gi|229701476|gb|EEO89504.1| putative two-component response regulator [Yersinia pestis Pestoides A] gi|262362822|gb|ACY59543.1| response regulator [Yersinia pestis D106004] gi|262366746|gb|ACY63303.1| response regulator [Yersinia pestis D182038] gi|270338498|gb|EFA49275.1| response regulator receiver domain protein [Yersinia pestis KIM D27] gi|294355219|gb|ADE65560.1| response regulator [Yersinia pestis Z176003] gi|320014434|gb|ADV98005.1| putative two-component response regulator [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 235 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 49/226 (21%), Positives = 90/226 (39%), Gaps = 11/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ +D A +++G + + +G + L + D ++ Sbjct: 3 ILIAEDNAHIRNGLMEVLAHEGYRPIAAENGVQALALYRQQQPDFIILDIM--MPELDGY 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ R IR H P+I +S + + G DD ++KP E+ AR+ I RR Sbjct: 61 KVCREIRKHDWQTPIIFLSAKDEEIDRVIGLELGADDYISKPFGIHEMRARIKTIVRRCL 120 Query: 121 VSNNR------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 G + VF + L RE IL YL ++G+ V + +F Sbjct: 121 RKVPESAEDAGFPFGDLMVFPNELCAIRGETRLELSLREVNILRYLYQHKGRVVTRDMLF 180 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219 A++G +D + ++ HISKLRK + + + + + GY Sbjct: 181 DAVWG-YDHLPQSRTLDQHISKLRKTIELDPVHPVLIRTVHGAGYR 225 >gi|302036228|ref|YP_003796550.1| putative phosphate regulon transcriptional regulatory protein PhoB [Candidatus Nitrospira defluvii] gi|300604292|emb|CBK40624.1| putative Phosphate regulon transcriptional regulatory protein phoB [Candidatus Nitrospira defluvii] Length = 238 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 43/226 (19%), Positives = 93/226 (41%), Gaps = 12/226 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G + + D+ ++ L L Sbjct: 11 ILIVEDEKDILQLVKLYLEKEGFRTVSAMTGTEGLRQVKAEHPDLIILDLML--PELDGL 68 Query: 62 ELPRII---RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAA 114 E+ + I + + +P++ ++ T+ + G DD V KP + + A + Sbjct: 69 EVCKRIRLNQETALLPILMLTAKAEESDTVIGLELGADDYVTKPFSPKALVARVKALLRR 128 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + R + GP+ V + + G+ L +E +LE+L+ N G+ + + + Sbjct: 129 LERNANSPQTQYHYGPLTVDLSRHEVRLDGQEVALTAKEFGLLEHLLRNIGRVLTRDVLL 188 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 SA++G +D V+ H+ +L++KL L D + S + LGY + Sbjct: 189 SAVWG-YDYYGTTRTVDVHVRRLKQKL--PLLDDAIISIKSLGYKL 231 >gi|229105451|ref|ZP_04236094.1| Two-component response regulator [Bacillus cereus Rock3-28] gi|228678007|gb|EEL32241.1| Two-component response regulator [Bacillus cereus Rock3-28] Length = 229 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 52/229 (22%), Positives = 90/229 (39%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++++ F + + + + D+ ++ L Sbjct: 5 ILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIML--PELDGW 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR-------EILARVAA 114 + R IR S+VP+I ++ TL F+ G DD V KP +L A Sbjct: 63 SVCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKA 122 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + L+ ++ I V R V L E IL Y M N+G + + Q+ Sbjct: 123 SKKPLENEDDTLSIHGIHVHFPSRTVTVDEVDVSLTHTEFEILVYFMKNQGIVLTREQLI 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 S I+G ++ A ++ V SHI LR KL K + + GY + N Sbjct: 183 SRIWG-YEFAGDDRTVNSHIRNLRNKLGEK--AKYITTVVRTGYKFEGN 228 >gi|169630420|ref|YP_001704069.1| putative sensory transduction protein [Mycobacterium abscessus ATCC 19977] gi|169242387|emb|CAM63415.1| Putative sensory transduction protein [Mycobacterium abscessus] Length = 249 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 51/230 (22%), Positives = 96/230 (41%), Gaps = 15/230 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + + + + + L DV ++ L G +E Sbjct: 19 LVVDDEVPLAEVVASYLKRESFEVHLAHDGRRALDLAREVDPDVVILDIGL--PGVDGIE 76 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +R S ++ ++ + T+ G DD V KP RE++ARV A+ RR + + Sbjct: 77 VCRQLRVFSDAYVVMLTARDTEVDTIVGLSVGADDYVTKPFSPREVVARVRAMLRRPRRA 136 Query: 123 N-----------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 G +R+ DGR+ V L R E +L L + G +++ Sbjct: 137 PESPAAVTPELSPPRVFGALRINVDGREVHVGERPVTLTRTEFDVLAALSSRPGIVLSRK 196 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 Q+ ++G +N+V+ H+ LR+KL + V + R +GY + Sbjct: 197 QLLDTVWGDT-WVGNDNIVDVHVGHLRQKLGDSPSQPRYVMTVRGVGYRM 245 >gi|134298626|ref|YP_001112122.1| two component transcriptional regulator [Desulfotomaculum reducens MI-1] gi|134051326|gb|ABO49297.1| two component transcriptional regulator, winged helix family [Desulfotomaculum reducens MI-1] Length = 223 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 48/218 (22%), Positives = 98/218 (44%), Gaps = 4/218 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++IDD + +G +E N + ++ ++ L G E Sbjct: 6 LVIDDDPKITAMLQRALTYEGYRVEVANDGYKGMNMAKENPPELLILDIML--PGLDGWE 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + R + P++ +S +++ + + G DD + KP E+LARV A+ RR + Sbjct: 64 ICQRFRKDNFTPILILSARDEVESKVKGLNLGADDYLGKPFALEELLARVQALLRRRITA 123 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 N + +++ + R+ G + L RE +L + M + + + + QI ++GL D Sbjct: 124 NKVIQFSDLKMDLEAREVRRAGNLLTLTSREFDLLAHFMHHPNQVLTREQIIDRVWGL-D 182 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 NV+E +I+ LR+K+ + + + R +GY + Sbjct: 183 FTGGSNVLEVYINMLRQKIEDYGS-RIIHTVRGVGYVL 219 >gi|313906136|ref|ZP_07839485.1| two component transcriptional regulator, winged helix family [Eubacterium cellulosolvens 6] gi|313469023|gb|EFR64376.1| two component transcriptional regulator, winged helix family [Eubacterium cellulosolvens 6] Length = 229 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 47/227 (20%), Positives = 82/227 (36%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + + G + E D+ ++ L G Sbjct: 4 ILIIEDEESIAELEKDYLELSGFEVAIETDGESGRDRALEEDFDMFILDLML--PGIDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 + + IR P+I +S + G DD + KP E++ARV A R Sbjct: 62 AICKQIREKKNTPIIIVSAKKDDIDKIHGLGLGADDYMTKPFSPSELVARVKAHLARYER 121 Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + N+ E IR+ R V E +E +L +L N K ++F Sbjct: 122 LVSSGQPKNDVIEIRGIRIDKTARRVWVNKEEKNFTNKEFDLLTFLAENPNHVFTKEELF 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 I+ + D + V HI K+R+K+ N +++ +GY Sbjct: 182 QKIWNM-DSVGDIATVTVHIKKIREKIEYNTAKPQYIETIWGVGYRF 227 >gi|288940032|ref|YP_003442272.1| winged helix family two component transcriptional regulator [Allochromatium vinosum DSM 180] gi|288895404|gb|ADC61240.1| two component transcriptional regulator, winged helix family [Allochromatium vinosum DSM 180] Length = 224 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 50/222 (22%), Positives = 94/222 (42%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + D + G ++ + + + DV ++ L G L Sbjct: 3 ILLVEDDPQMADYLRKALIEAGAVVDRAADGREGLLMAAGSDYDVLILDRML--PGLDGL 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118 + R +RA P++ +S + ++ +G DD + KP E+ ARV A Sbjct: 61 AIVRTLRASGNRTPVLFLSALGDVDDRVEGLRAGGDDYLIKPFAFSELQARVEALLRRGA 120 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + R G + + R+ G+ L RE R+LE LM + G+ V +T + ++ Sbjct: 121 AEAPETRLRVGDLEMDLLKREVTRAGQSIQLQPREFRLLECLMRHAGRVVTRTMLLEQVW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + NV++ HIS+LR K+ + + R GY + Sbjct: 181 D-YHFDPQTNVIDVHISRLRGKIDKDFDPPLLQTVRGAGYRL 221 >gi|330719359|ref|ZP_08313959.1| DNA-binding response regulator [Leuconostoc fallax KCTC 3537] Length = 232 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 43/226 (19%), Positives = 89/226 (39%), Gaps = 12/226 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +G + L + D ++ L + Sbjct: 4 ILVVDDEQAITTLLQFNLEQNGYHVTIAADGATALQLVEQEQYDAVLLDLML--PEVDGM 61 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R +R +S ++P+I ++ + + G DD + KP RE++AR+ A+ RR Sbjct: 62 SVLRQMRENSIRIPVILVTAKGDEFDRIFGLEIGADDYITKPFSPREVIARLKAVLRRYH 121 Query: 121 VSNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + + + G+ L RE +L Y G+ + + I Sbjct: 122 EQSTNRNDQVGYLTIQDLVIDDARKVVKKDGQTVILTPREYELLLYFAKRIGRVIDRETI 181 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGY 218 ++++G +D + +V+ HIS LR+K+ + + R GY Sbjct: 182 LTSVWG-YDFTGQSRMVDMHISNLREKIEKDPKHPTILKTVRGFGY 226 >gi|229044254|ref|ZP_04191927.1| Sensor histidine kinase [Bacillus cereus AH676] gi|228725079|gb|EEL76363.1| Sensor histidine kinase [Bacillus cereus AH676] Length = 231 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 44/230 (19%), Positives = 84/230 (36%), Gaps = 12/230 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD + + ++G ++ + S+ D+ ++ L Sbjct: 5 ILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQKVSTYEVDLMILDIM--MPKLNGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARVA 113 E+ + +R ++ VP++ +S + +G DD + KP + E + Sbjct: 63 EVCQEVRENNTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSF 122 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 K + + + +V GE L E IL L +N G+ + +I Sbjct: 123 QNATSQKNEDGIIRIRSVEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEI 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDW 222 F ++ D V HIS LR KL G + + +GY I+ Sbjct: 183 FERVWNE-DGYGSNKTVMVHISNLRDKLETVINGEKFIHTVWGVGYKIEK 231 >gi|153006996|ref|YP_001381321.1| two component transcriptional regulator [Anaeromyxobacter sp. Fw109-5] gi|152030569|gb|ABS28337.1| two component transcriptional regulator, winged helix family [Anaeromyxobacter sp. Fw109-5] Length = 230 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 89/228 (39%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 V+I+D + G G +G S+ + E L + R D+ ++ L G L Sbjct: 5 IVIIEDDPSILRGLQLNLGMEGYSVRSASDGETGLRLAKTERPDLVLVDVMLPRLG--GL 62 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH------HREILARVAA 114 E+ R IR ++P++ +S + G DD + KP + L R Sbjct: 63 EVVREIRKTDPELPILILSAKGQEGDKVAGLQLGADDYLVKPFGLKELLARIDALLRRRR 122 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + G I + + R V G L RE +L + + + + ++ Q+ Sbjct: 123 SRGETGPNRAVRKVGQIELDLEARRATVGGSTLDLTSREYDLLAFFVTHPDRVFSREQLM 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221 ++G V++ I++LR + + +++ R +GY + Sbjct: 183 ENVWGSR-YFGTARTVDNFIARLRAHIGDDAERPRHLETVRGVGYRFN 229 >gi|52078905|ref|YP_077696.1| sensory transduction protein YclJ [Bacillus licheniformis ATCC 14580] gi|52784279|ref|YP_090108.1| YclJ [Bacillus licheniformis ATCC 14580] gi|319648791|ref|ZP_08003002.1| hypothetical protein HMPREF1012_04041 [Bacillus sp. BT1B_CT2] gi|52002116|gb|AAU22058.1| hypothetical sensory transduction protein YclJ [Bacillus licheniformis ATCC 14580] gi|52346781|gb|AAU39415.1| YclJ [Bacillus licheniformis ATCC 14580] gi|317389210|gb|EFV70026.1| hypothetical protein HMPREF1012_04041 [Bacillus sp. BT1B_CT2] Length = 228 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 46/230 (20%), Positives = 91/230 (39%), Gaps = 12/230 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D V F +G E + S D+ I+ L + Sbjct: 3 ILMIEDNLSVCTMTEMFFAKEGFETEFVHDGLEGYNRFKSGDWDLLIIDIML--PSMDGV 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + +R S VP+I ++ + + F+ G DD V KP ++AR+ A+ RR + Sbjct: 61 TICKKVREESTVPIIMLTAKDTESDQVLGFELGADDYVTKPFSPLALVARIKAVSRRYQN 120 Query: 122 SNNRA--------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + ++ L +E +L YL+ + + ++ Q+ Sbjct: 121 AGRQDSADSDTLETEHFKINKKTREVFLDGVQIQNLTPKEFDLLYYLVQSPKQVFSREQL 180 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 ++G + +E V+ HI +LRKKL + + + +GY D + Sbjct: 181 LEQVWG-YQFYGDERTVDVHIKRLRKKLGSDSRP-FLYTVWGVGYKFDED 228 >gi|300119329|ref|ZP_07057007.1| DNA-binding response regulator [Bacillus cereus SJ1] gi|298723284|gb|EFI64048.1| DNA-binding response regulator [Bacillus cereus SJ1] Length = 231 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 44/230 (19%), Positives = 84/230 (36%), Gaps = 12/230 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD + + ++G ++ + + S+ D+ ++ L Sbjct: 5 ILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQMISTYEVDLMILDIM--MPKRNGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARVA 113 E+ + +R ++ VP++ +S + +G DD + KP + E + Sbjct: 63 EVCQEVRENNTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSF 122 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 K + + +V GE L E IL L +N G+ + +I Sbjct: 123 QNASSPKNEDGMIRIRSAEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEI 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222 F ++ D V HIS LR KL G + + +GY I+ Sbjct: 183 FERVWNE-DGYGSNKTVMVHISNLRDKLETVMNGEKFIHTVWGVGYKIEK 231 >gi|15893854|ref|NP_347203.1| response regulator [Clostridium acetobutylicum ATCC 824] gi|15023431|gb|AAK78543.1|AE007571_9 Response regulator (REC, HTH domains) [Clostridium acetobutylicum ATCC 824] gi|325507981|gb|ADZ19617.1| Response regulator (REC, HTH domains) [Clostridium acetobutylicum EA 2018] Length = 233 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 44/229 (19%), Positives = 92/229 (40%), Gaps = 11/229 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD ++D ++G ++ + + + ++ + Sbjct: 7 LVVDDEKEIRDLIGIYLNNEGFNVIKAENGVEALEILKDTEVQLVLLDIM--MPKMDGIT 64 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 IR P+I +S + +G DD ++KP + E++ARV + RR Sbjct: 65 TCMKIREDKNTPIIMLSAKGEDMDKILGLTTGADDYISKPFNPLELIARVKSQIRRYTKL 124 Query: 123 NNRAETG-------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 N+ E+ I + +D + ++ L +RE IL L N+G + +I+ Sbjct: 125 NSTYESNSANIEVGEITINTDTHEVKIGDRTVSLTKREFDILVLLSRNKGVVFSTEKIYE 184 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223 +++ N V HI K+R+K+ + + + +GY I+ N Sbjct: 185 SVWHEEFYDCH-NTVMVHIRKIREKIEKNPRKPEYIKTVWGVGYKIEKN 232 >gi|319793996|ref|YP_004155636.1| two component transcriptional regulator winged helix family [Variovorax paradoxus EPS] gi|315596459|gb|ADU37525.1| two component transcriptional regulator, winged helix family [Variovorax paradoxus EPS] Length = 243 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 47/230 (20%), Positives = 92/230 (40%), Gaps = 14/230 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 V++DD A ++D +G + + + D+ ++ GE L Sbjct: 11 IVIVDDDARIRDLLRRYLTQEGFEVIVAEDGKALNRILLRDTVDLIVLDLM--MPGEDGL 68 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R +R A+ + P+I ++ + + G DD + KP + RE+LARV A+ RR Sbjct: 69 SVCRRLRAANDRTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARVHAVLRRRP 128 Query: 121 V---------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 N GP R + GE L E +L+ L+ + + +++ Sbjct: 129 PLEAPGAPSTENETVTFGPFAFDLGSRTLKKDGEELSLTTGEFAMLKALVRHPRQPLSRE 188 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++ G + + ++ IS+LRK + + + + +GY Sbjct: 189 KLAQLARGR-EFEPFDRSLDVQISRLRKLVESDAAAPRYIQTVWGVGYVF 237 >gi|306843562|ref|ZP_07476163.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella sp. BO1] gi|306276253|gb|EFM57953.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella sp. BO1] Length = 228 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 43/224 (19%), Positives = 89/224 (39%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++D + +G ++ + E + D+ ++ L G + Sbjct: 7 IAVVEDEEALSVLLRYNLEAEGYQVDTMLRGDEAEIALRESVPDLLILDWML--PGVSGI 64 Query: 62 ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIY 116 EL R +R + P+I ++ + G DD V KP E+ + Sbjct: 65 ELCRRLRQRPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKAMLRR 124 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + ++ + G + + + + L E R+LEY M + G+ +++Q+ Sbjct: 125 ANPSILSHVLKVGDLLLDRQQHRVYRKEKEVHLGPTEFRLLEYFMMSPGRVFSRSQLLDG 184 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G D V++ V+ H+ +LRK + DP+ + R GYS Sbjct: 185 VWG-PDIYVDDRTVDVHVGRLRKAINVGRAVDPIRTVRGAGYSF 227 >gi|229163815|ref|ZP_04291758.1| Two-component response regulator [Bacillus cereus R309803] gi|228619635|gb|EEK76518.1| Two-component response regulator [Bacillus cereus R309803] Length = 229 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 52/229 (22%), Positives = 89/229 (38%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++++ F + + + + D+ ++ L Sbjct: 5 ILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIML--PELDGW 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR-------EILARVAA 114 + R IR S+VP+I ++ TL F+ G DD V KP +L Sbjct: 63 SVCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKV 122 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + L+ N+ I V R V L E IL Y M N+G + + Q+ Sbjct: 123 TKQLLENENDTLAIHGIHVHFPSRTVTVDRTDINLTHTEFEILAYFMKNQGIVLTREQLI 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 S I+G ++ A ++ V SHI LR KL K + + GY + N Sbjct: 183 SRIWG-YEFAGDDRTVNSHIRNLRNKLGEK--AKYITTVVRTGYKFEGN 228 >gi|261408699|ref|YP_003244940.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261285162|gb|ACX67133.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] Length = 243 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 43/232 (18%), Positives = 88/232 (37%), Gaps = 14/232 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++I+D + +G +E S D+ ++ L G + Sbjct: 6 LVIEDEPTLSRLLSYNLTQEGFQVEVEEHGTAGYEKASQHEYDLILLDVML--PGMNGFQ 63 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH----------REILAR 111 + +R++ P+I ++ + + + G DD + KP ++ Sbjct: 64 ILEKLRSNGITTPIIILTAKNAEEEVVQGLKMGADDYITKPFGVSELLARVSAVMRRVSG 123 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 A + N G + ++ + + + G+ L +E +L YL G + + Sbjct: 124 HADEVKTTDNQGNVISLGQLEIYPEKYEVRLGGQSINLRPKEFEVLLYLAKKPGVVLTRD 183 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 + + ++G FD + V+ H+S LRKKL +DS R +GY + N Sbjct: 184 DLMNVVWG-FDYIGGQRTVDVHVSSLRKKLELDPESVHIDSIRGVGYKLVVN 234 >gi|327193856|gb|EGE60733.1| two component transcriptional regulator, winged helix family protein [Rhizobium etli CNPAF512] Length = 234 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 48/225 (21%), Positives = 85/225 (37%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++D G++ S D+ ++ L Sbjct: 5 ILVVDDEPHIRDVICFAVERAGLTPTAVRSGSEAMAAFRRGNIDLIILDIG--MPDMDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR S +P++ +S + + G DD V KP RE++ARV AI +R Sbjct: 63 EVCRQIRKTSGLPILFLSARDEEIDRILGLEIGGDDYVTKPFSPRELIARVKAILKRSGN 122 Query: 122 SNNRAETG------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 I + GR + E ILE L++ G ++ Q+ Sbjct: 123 GAAPGRRHAALVAGEISLDRHGRTVMFGDSALAMTALEFAILEALLSRPGMVFSREQLMQ 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + YG V + ++SHI +R K G + + +G+ + Sbjct: 183 SAYGAGTY-VADRTIDSHIRNIRAKFTAVGGTGIIATVHGIGFKL 226 >gi|227874456|ref|ZP_03992632.1| response regulator [Oribacterium sinus F0268] gi|227839684|gb|EEJ50138.1| response regulator [Oribacterium sinus F0268] Length = 224 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 46/222 (20%), Positives = 96/222 (43%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ + + E L + ++ I ++ Sbjct: 6 ILVVDDEERMQKLLKDFLKMKDYEVLLAGNGEEAIDLFFKEK-SIALIILDVMMPKMDGW 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120 + IR HS+VP+I ++ L FD G D+ ++KP + ++ARV A + R Sbjct: 65 TALKTIREHSKVPVIMLTARSEENDELKGFDYGADEYISKPFSPKILVARVEALLRRSGV 124 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 E G I + V G+ L +E +L+Y + N+G +++ +I + ++ Sbjct: 125 QKEELLEVGGIVIDEAAHSVTVDGKPIELSFKEYELLQYFVENKGIALSREKILNNVW-N 183 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D + +++H+ KLR KL +K + + + +GY + Sbjct: 184 YDYFGDARTIDTHVKKLRAKLMDKG--EYIKTVWGMGYKFEV 223 >gi|170769433|ref|ZP_02903886.1| heavy metal response regulator [Escherichia albertii TW07627] gi|170121757|gb|EDS90688.1| heavy metal response regulator [Escherichia albertii TW07627] Length = 223 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 47/219 (21%), Positives = 99/219 (45%), Gaps = 3/219 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D ++ + G ++ + +L + ++ L G Sbjct: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIML--PGMDGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + +R + P+I ++ S+ + DSG +D + KP E+LARV A R+ Sbjct: 61 QILQTLRTAKKTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 N+ E +++ S ++ L R+E ++L L + G+ + +T I S ++G+ Sbjct: 121 LNSTLEISGLKMDSVSQNVSRDNVNITLTRKEFQLLWLLASRAGEIIPRTVIASEVWGI- 179 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + N V+ I +LR K+ + + + R +GYS+ Sbjct: 180 NFDSDTNTVDVAIRRLRAKVDDPFNEKLIATIRGMGYSL 218 >gi|217960013|ref|YP_002338569.1| DNA-binding response regulator [Bacillus cereus AH187] gi|222096097|ref|YP_002530154.1| DNA-binding response regulator [Bacillus cereus Q1] gi|229139204|ref|ZP_04267779.1| Sensor histidine kinase [Bacillus cereus BDRD-ST26] gi|217063457|gb|ACJ77707.1| DNA-binding response regulator [Bacillus cereus AH187] gi|221240155|gb|ACM12865.1| DNA-binding response regulator [Bacillus cereus Q1] gi|228644263|gb|EEL00520.1| Sensor histidine kinase [Bacillus cereus BDRD-ST26] Length = 231 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 44/230 (19%), Positives = 84/230 (36%), Gaps = 12/230 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD + + ++G ++ + + S+ D+ ++ L Sbjct: 5 ILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQMISTYEIDLMILDIM--MPKRNGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARVA 113 E+ + +R ++ VP++ +S + +G DD + KP + E + Sbjct: 63 EVCQEVRENNTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSF 122 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 K + + +V GE L E IL L +N G+ + +I Sbjct: 123 QNATSPKNEDGMIRIRSAEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEI 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222 F ++ D V HIS LR KL G + + +GY I+ Sbjct: 183 FERVWNE-DGYGSNKTVMVHISNLRDKLETGMNGEKFIHTVWGVGYKIEK 231 >gi|16077443|ref|NP_388257.1| two-component response regulator YclK [Bacillus subtilis subsp. subtilis str. 168] gi|221308189|ref|ZP_03590036.1| hypothetical protein Bsubs1_02118 [Bacillus subtilis subsp. subtilis str. 168] gi|221312511|ref|ZP_03594316.1| hypothetical protein BsubsN3_02104 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221317448|ref|ZP_03598742.1| hypothetical protein BsubsJ_02123 [Bacillus subtilis subsp. subtilis str. JH642] gi|221321710|ref|ZP_03603004.1| hypothetical protein BsubsS_02134 [Bacillus subtilis subsp. subtilis str. SMY] gi|23396952|sp|P94413|YCLJ_BACSU RecName: Full=Uncharacterized transcriptional regulatory protein yclJ gi|1805445|dbj|BAA09007.1| yclJ [Bacillus subtilis] gi|2632676|emb|CAB12183.1| two-component response regulator [YclK] [Bacillus subtilis subsp. subtilis str. 168] Length = 227 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 49/229 (21%), Positives = 90/229 (39%), Gaps = 11/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D V F +G E + + D+ ++ L + Sbjct: 3 ILMIEDNVSVCTMTEMFFFKEGFEAEFVHDGLEGYQRFTEENWDLIILDIML--PSMDGV 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 + R IR S VP+I ++ + + F+ G DD V KP ++AR+ A+ RR K Sbjct: 61 TICRKIRETSTVPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARIKAVIRRYKA 120 Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + V L +E +L YL+ N + ++ Q+ Sbjct: 121 TGKAVIDEDMIETECFTINKKTREVLLNGEPVENLTPKEFDLLYYLVQNPRQVFSREQLL 180 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 ++G + +E V+ HI +LRKKL ++ + + +GY D + Sbjct: 181 EQVWG-YQFYGDERTVDVHIKRLRKKLASEDKP-FLYTVWGVGYKFDED 227 >gi|22538097|ref|NP_688948.1| phosphate regulon response regulator PhoB [Streptococcus agalactiae 2603V/R] gi|25011986|ref|NP_736381.1| hypothetical protein gbs1948 [Streptococcus agalactiae NEM316] gi|76788392|ref|YP_330516.1| phosphate regulon transcriptinal regulatory protein PhoB [Streptococcus agalactiae A909] gi|76797930|ref|ZP_00780191.1| Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Streptococcus agalactiae 18RS21] gi|77405067|ref|ZP_00782167.1| phosphate regulon response regulator PhoB [Streptococcus agalactiae H36B] gi|77412880|ref|ZP_00789084.1| phosphate regulon response regulator PhoB [Streptococcus agalactiae 515] gi|22535003|gb|AAN00821.1|AE014280_13 phosphate regulon response regulator PhoB [Streptococcus agalactiae 2603V/R] gi|24413529|emb|CAD47607.1| Unknown [Streptococcus agalactiae NEM316] gi|76563449|gb|ABA46033.1| phosphate regulon transcriptinal regulatory protein PhoB, putative [Streptococcus agalactiae A909] gi|76586704|gb|EAO63201.1| Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Streptococcus agalactiae 18RS21] gi|77161020|gb|EAO72127.1| phosphate regulon response regulator PhoB [Streptococcus agalactiae 515] gi|77176361|gb|EAO79130.1| phosphate regulon response regulator PhoB [Streptococcus agalactiae H36B] Length = 225 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 47/225 (20%), Positives = 85/225 (37%), Gaps = 6/225 (2%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEK 59 M ++D A +++ + G +GF+S E D+ ++ L G G Sbjct: 1 MIYCVEDDADIREMMLYTLQMAGFKAQGFSSSELFWEAIQEKVPDLILLDIMLPGDDGLT 60 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYR 117 +LE R +P+I + S + D G DD + KP E+++R+ A Sbjct: 61 ILERLRRKHQTEMIPVIMTTAKGSEYDKVKGLDLGADDYLVKPFGMMEMISRIKAVLRRS 120 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 R S G + + + E L +E +L N + + ++ + Sbjct: 121 RQVDSKAHIIIGNLEIDPTNYWVKRGTEKIHLTLKEFELLVLFFRNPNRVFTRQELLDKV 180 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +G E V+ HI LR KL + + R +GY ++ Sbjct: 181 WGE-QFLGETRTVDVHIGTLRTKLGEDGY--LIATVRGVGYRLEE 222 >gi|331083978|ref|ZP_08333085.1| regulatory protein vanR [Lachnospiraceae bacterium 6_1_63FAA] gi|330402340|gb|EGG81910.1| regulatory protein vanR [Lachnospiraceae bacterium 6_1_63FAA] Length = 231 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 46/229 (20%), Positives = 84/229 (36%), Gaps = 10/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D ++ + F E D++ ++ L Sbjct: 5 ILIVDDETEIADLVELYLQNEDFLVYKFYDAEEAWNFMEKEELDLALLDIM--MPKISGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL + IR P+I ++ + + G DD + KP E++ARV A RR K Sbjct: 63 ELCKKIRERYNYPIIMLTAKGTEIDKIQGLTLGADDYITKPFQPLEVVARVKAQLRRYKR 122 Query: 122 SNNRA-------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N E + + + + + L E IL L +G V+ ++F Sbjct: 123 YNTGTVKAEEILEHKGLVLNKKTHECFLNERLLSLTPTEFSILVILCEQKGNVVSAEELF 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 I+ + N + HI LR+K+ + + + GY I+ Sbjct: 183 HQIWKDEYYSKSNNTITVHIRHLREKMEDSFENPKYIKTVWGCGYKIEK 231 >gi|289550049|ref|YP_003470953.1| Two-component response regulator colocalized with HrtAB transporter [Staphylococcus lugdunensis HKU09-01] gi|315659323|ref|ZP_07912187.1| hemin DNA-binding response regulator [Staphylococcus lugdunensis M23590] gi|289179581|gb|ADC86826.1| Two-component response regulator colocalized with HrtAB transporter [Staphylococcus lugdunensis HKU09-01] gi|315495748|gb|EFU84079.1| hemin DNA-binding response regulator [Staphylococcus lugdunensis M23590] Length = 224 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 44/220 (20%), Positives = 93/220 (42%), Gaps = 4/220 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + D + ++G S D++ ++ + G E Sbjct: 5 LIVDDDQTILDYVASHLNNEGYHTYTKPSGTAALQFLEQQTVDIAIVDIMMA--GMDGFE 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L + I+ +P+I ++ +L F SG DD V KP +E++ R+ A+ RR +++ Sbjct: 63 LCQQIKLDFDLPVIMLTARDALTDKERAFLSGTDDYVTKPFEIKELIFRIKAVLRRYQIN 122 Query: 123 NNRAETGPIRVFSDGRDPEVQGEV-FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 +D LP++E ++L L ++ + + + ++G F Sbjct: 123 AEHIIQLGNLTLNDNYMEVQVDHKTMTLPKKEFQLLYMLTSHPKQVFLRDTLIEKVWG-F 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D +E ++ HI +LR++L + + R GY ++ Sbjct: 182 DYEGDERTLDVHIKRLRQRLSKLAANVTITTVRGQGYKVE 221 >gi|229170549|ref|ZP_04298197.1| Two-component response regulator [Bacillus cereus AH621] gi|228612898|gb|EEK70075.1| Two-component response regulator [Bacillus cereus AH621] Length = 228 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 50/227 (22%), Positives = 91/227 (40%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ ++G+ + L D+ ++ + Sbjct: 5 ILIVDDDKEIRNLISVYLENEGLKTQKAEDAIEALQLLEEKEFDLIILDIM--MPNLDGI 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E IR +P+I +S + SG DD + KP + E++ARV + RR K Sbjct: 63 EACMKIREDRNMPIIMLSAKSEDIDKIQGLASGADDYLTKPFNPLELIARVKSQLRRFKK 122 Query: 122 SNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N V +D R V+G+ L +E ILE L N+G ++ +I+ Sbjct: 123 YNTSINHNKSILEIGDLTVNTDTRQVWVRGKETRLTPKEFDILELLARNKGIVLSVAKIY 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220 A++ +N V HI+K+R K+ + + +GY I Sbjct: 183 EAVWKEV-FYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGYKI 228 >gi|228476159|ref|ZP_04060867.1| response regulator ArlR [Staphylococcus hominis SK119] gi|314936439|ref|ZP_07843786.1| DNA-binding response regulator ArlR [Staphylococcus hominis subsp. hominis C80] gi|228269982|gb|EEK11462.1| response regulator ArlR [Staphylococcus hominis SK119] gi|313655058|gb|EFS18803.1| DNA-binding response regulator ArlR [Staphylococcus hominis subsp. hominis C80] Length = 219 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 52/219 (23%), Positives = 92/219 (42%), Gaps = 4/219 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + DG ++ E + D+ ++ L L Sbjct: 4 ILIVEDEQNLARFLELELTHDGYKVDIEYDGEPGLEKALNNDFDLIILDLML--PNINGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R P+I I+ + D G DD + KP E+ AR+ A+ RR Sbjct: 62 EICRRVRQVQSTPIIIITAKSDTYDKVTGLDYGADDYIVKPFEIEELFARIRAVLRRQPH 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + IR+ D V G+ + E +L L NR + + QI + ++G + Sbjct: 122 KD-IIDINGIRIDIDAFKVTVDGKQLDFTKTEYDLLYLLATNRNHVLQREQILNHVWG-Y 179 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + VE NVV+ +I LR KL+ +++ R +GY I Sbjct: 180 NSEVETNVVDVYIRYLRNKLKPFNKEKVIETVRGVGYVI 218 >gi|294013097|ref|YP_003546557.1| CheY-like response regulator [Sphingobium japonicum UT26S] gi|292676427|dbj|BAI97945.1| CheY-like response regulator [Sphingobium japonicum UT26S] Length = 239 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 45/229 (19%), Positives = 90/229 (39%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L+DD +++ G +G + + ++ D+ ++ GE L Sbjct: 7 LLLVDDERSIREPLAQYLGRNGFRVTAVENAAEARVRLNANAIDLVILDIM--MPGEDGL 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R IR S++P+I ++ + + G DD V KP RE++AR+ I+RR+ Sbjct: 65 SLCRHIRETSEIPVILLTAKSEETDRIVGLEMGADDYVLKPFSPRELVARIKVIFRRVAT 124 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF---------PLPRRERRILEYLMANRGKRVAKTQ 172 R ++ E PL E ++ + +++ Q Sbjct: 125 GGQRVTAPDGATYAFAGWLLKTQERTLVDGEGVALPLSTAEYNLMLAFATRPNQVLSRDQ 184 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + G A + +++ IS+LRKK+ + + + GY++ Sbjct: 185 LLDITQGREANAFD-RAIDNQISRLRKKIEPDPKNPTLIKTVWGGGYTL 232 >gi|315498662|ref|YP_004087466.1| two component transcriptional regulator, winged helix family [Asticcacaulis excentricus CB 48] gi|315416674|gb|ADU13315.1| two component transcriptional regulator, winged helix family [Asticcacaulis excentricus CB 48] Length = 241 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 44/227 (19%), Positives = 88/227 (38%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ +G + S + + + ++ GE L Sbjct: 14 ILVVDDDFDLRELISGFLSQNGFEVHTAASGREMDKVLQRGDIGLVVLDYM--MPGEDGL 71 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + + P+I +S + + G DD + KP H RE+LAR+ A+ RR Sbjct: 72 SICKRLNQKGGPPVIMLSAKGEEIDRIVGLELGADDYLAKPFHPRELLARIRAVMRRGDG 131 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFP------LPRRERRILEYLMANRGKRVAKTQIFS 175 ++ F D + P L E +L + G+ + + QI Sbjct: 132 RGQGEKSPLTTFFGWTLDNIKRTLQRPDGVQVALSNAEFELLRVFLERPGRALTRDQILD 191 Query: 176 AIYGLFDEAVEENVVESHISKLRKKL--RNKLGFDPVDSKRFLGYSI 220 ++G + + ++ IS+LR+KL G + + + R +GY Sbjct: 192 HLHG-PNSDNFDRAIDVQISRLRRKLNDEANDGEEIIRTIRGIGYMF 237 >gi|228960939|ref|ZP_04122572.1| hypothetical protein bthur0005_43940 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228798835|gb|EEM45815.1| hypothetical protein bthur0005_43940 [Bacillus thuringiensis serovar pakistani str. T13001] Length = 229 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 45/229 (19%), Positives = 88/229 (38%), Gaps = 11/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D + + + ++ +S E ++ ++ L Sbjct: 4 ILLIEDEVSIAELQRDYLEINDFQVDVEHSGEIGLQTALQEDYNLIILDIML--PKMNGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IRA +P++ +S + G DD + KP E++ARV A R + Sbjct: 62 EICKQIRAVKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIARYER 121 Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + I + R + E +E +L + + + + + K Q+F Sbjct: 122 LLGNVSKQRDTLYIHGISIDQRARKVFINNEEVAFTTKEFDLLTFFVTHPNQVLNKEQLF 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 I+GL D A + V HI KLR+K+ + +++ GY + Sbjct: 182 ERIWGL-DSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRFNV 229 >gi|145592903|ref|YP_001157200.1| two component transcriptional regulator [Salinispora tropica CNB-440] gi|145302240|gb|ABP52822.1| two component transcriptional regulator, winged helix family [Salinispora tropica CNB-440] Length = 227 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 51/225 (22%), Positives = 95/225 (42%), Gaps = 9/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D D + +G + + D+ ++ L E Sbjct: 5 LVVEDEESFSDALSYMLRKEGFEVSVAATGPSALTEFDRTGADIVLLDLML--PEMSGSE 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +R S VP+I ++ S + + G DD V KP RE++AR+ A+ RR V Sbjct: 63 VCRQLRQRSHVPIIMVTARDSEIDKVVGLEIGADDYVTKPYSPRELVARIRAVLRRKSVE 122 Query: 123 NNRA-----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + GP+R+ + V G LP +E +LE L+ N G+ + + Q+ + Sbjct: 123 TVESGAATLAAGPVRMDIERHVVTVDGGPVQLPLKEFELLELLLRNAGRVLTRGQLIDRV 182 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 +G D + ++ H+ +LR K+ + + R LGY + Sbjct: 183 WGA-DYVGDTKTLDVHVKRLRSKVEPEPSTPRHIVTVRGLGYKFE 226 >gi|74058492|gb|AAZ98835.1| VanRD [Enterococcus gallinarum] Length = 232 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 43/232 (18%), Positives = 89/232 (38%), Gaps = 15/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +DG ++ F + S D++ ++ L Sbjct: 5 ILVVDDEKELADLVEVYLKNDGYTVYKFYNGTDALKCIESTPLDLAILDIML--PDIDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH----------HREILAR 111 ++ + IR P+I ++ S DD + KP + R Sbjct: 63 QICQKIREKFYFPVIMLTA-KVEDGDKIMGLSIADDYITKPFNPLEVVARVKAQLRQYMR 121 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + + + + + + + + + G+ L E IL YL N+GK V+ Sbjct: 122 YRQPHFKQEDERSEYDIRGMTISKNSHKCILFGKELQLTPTEFSILWYLCENQGKVVSTE 181 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDW 222 ++F A++G N V +HI +LR+K++ + + +GY+I+ Sbjct: 182 ELFEAVWGEKYMD-NNNTVMAHIGRLREKMKERAKNPKFIKTVWGVGYTIEK 232 >gi|42781625|ref|NP_978872.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|42737548|gb|AAS41480.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] Length = 231 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 44/230 (19%), Positives = 84/230 (36%), Gaps = 12/230 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD + + ++G ++ + + S+ D+ ++ L Sbjct: 5 ILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQMISTYEVDLMILDIM--MPKRNGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARVA 113 E+ + +R ++ VP++ +S + +G DD + KP + E + Sbjct: 63 EVCQEVRENNTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSF 122 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 K + + +V GE L E IL L +N G+ + +I Sbjct: 123 QNATSSKNEDGMIRIRSAEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEI 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222 F ++ D V HIS LR KL G + + +GY I+ Sbjct: 183 FERVWNE-DGYGSNKTVMVHISNLRDKLETGMNGEKFIHTVWGVGYKIEK 231 >gi|29377731|ref|NP_816885.1| DNA-binding response regulator [Enterococcus faecalis V583] gi|227518155|ref|ZP_03948204.1| response regulator [Enterococcus faecalis TX0104] gi|227555640|ref|ZP_03985687.1| response regulator [Enterococcus faecalis HH22] gi|229547174|ref|ZP_04435899.1| response regulator protein [Enterococcus faecalis TX1322] gi|229550744|ref|ZP_04439469.1| response regulator [Enterococcus faecalis ATCC 29200] gi|255971507|ref|ZP_05422093.1| DNA-binding response regulator [Enterococcus faecalis T1] gi|255974457|ref|ZP_05425043.1| DNA-binding response regulator [Enterococcus faecalis T2] gi|256618570|ref|ZP_05475416.1| DNA-binding response regulator [Enterococcus faecalis ATCC 4200] gi|256761812|ref|ZP_05502392.1| DNA-binding response regulator [Enterococcus faecalis T3] gi|256957058|ref|ZP_05561229.1| DNA-binding response regulator [Enterococcus faecalis DS5] gi|256960922|ref|ZP_05565093.1| DNA-binding response regulator [Enterococcus faecalis Merz96] gi|256963940|ref|ZP_05568111.1| DNA-binding response regulator [Enterococcus faecalis HIP11704] gi|257078735|ref|ZP_05573096.1| DNA-binding response regulator [Enterococcus faecalis JH1] gi|257081305|ref|ZP_05575666.1| DNA-binding response regulator [Enterococcus faecalis E1Sol] gi|257083963|ref|ZP_05578324.1| DNA-binding response regulator [Enterococcus faecalis Fly1] gi|257087793|ref|ZP_05582154.1| DNA-binding response regulator [Enterococcus faecalis D6] gi|257088438|ref|ZP_05582799.1| two component system response regulator [Enterococcus faecalis CH188] gi|257417380|ref|ZP_05594374.1| DNA-binding response regulator [Enterococcus faecalis AR01/DG] gi|257418883|ref|ZP_05595877.1| DNA-binding response regulator [Enterococcus faecalis T11] gi|257421302|ref|ZP_05598292.1| DNA-binding response regulator [Enterococcus faecalis X98] gi|293384817|ref|ZP_06630662.1| regulatory protein VanR [Enterococcus faecalis R712] gi|293388239|ref|ZP_06632758.1| regulatory protein VanR [Enterococcus faecalis S613] gi|294781206|ref|ZP_06746553.1| putative regulatory protein VanR [Enterococcus faecalis PC1.1] gi|300861487|ref|ZP_07107571.1| response regulator receiver domain protein [Enterococcus faecalis TUSoD Ef11] gi|307268869|ref|ZP_07550234.1| putative regulatory protein VanR [Enterococcus faecalis TX4248] gi|307273944|ref|ZP_07555154.1| putative regulatory protein VanR [Enterococcus faecalis TX0855] gi|307283993|ref|ZP_07564163.1| putative regulatory protein VanR [Enterococcus faecalis TX0860] gi|307286511|ref|ZP_07566610.1| putative regulatory protein VanR [Enterococcus faecalis TX0109] gi|307289984|ref|ZP_07569910.1| putative regulatory protein VanR [Enterococcus faecalis TX0411] gi|312901344|ref|ZP_07760625.1| putative regulatory protein VanR [Enterococcus faecalis TX0470] gi|312902991|ref|ZP_07762180.1| putative regulatory protein VanR [Enterococcus faecalis TX0635] gi|312908859|ref|ZP_07767798.1| putative regulatory protein VanR [Enterococcus faecalis DAPTO 512] gi|312952977|ref|ZP_07771833.1| putative regulatory protein VanR [Enterococcus faecalis TX0102] gi|312979498|ref|ZP_07791180.1| putative regulatory protein VanR [Enterococcus faecalis DAPTO 516] gi|29345199|gb|AAO82955.1| DNA-binding response regulator [Enterococcus faecalis V583] gi|44934164|gb|AAS49401.1| response regulator [Enterococcus faecalis] gi|227074398|gb|EEI12361.1| response regulator [Enterococcus faecalis TX0104] gi|227175217|gb|EEI56189.1| response regulator [Enterococcus faecalis HH22] gi|229304177|gb|EEN70173.1| response regulator [Enterococcus faecalis ATCC 29200] gi|229307756|gb|EEN73743.1| response regulator protein [Enterococcus faecalis TX1322] gi|255962525|gb|EET95001.1| DNA-binding response regulator [Enterococcus faecalis T1] gi|255967329|gb|EET97951.1| DNA-binding response regulator [Enterococcus faecalis T2] gi|256598097|gb|EEU17273.1| DNA-binding response regulator [Enterococcus faecalis ATCC 4200] gi|256683063|gb|EEU22758.1| DNA-binding response regulator [Enterococcus faecalis T3] gi|256947554|gb|EEU64186.1| DNA-binding response regulator [Enterococcus faecalis DS5] gi|256951418|gb|EEU68050.1| DNA-binding response regulator [Enterococcus faecalis Merz96] gi|256954436|gb|EEU71068.1| DNA-binding response regulator [Enterococcus faecalis HIP11704] gi|256986765|gb|EEU74067.1| DNA-binding response regulator [Enterococcus faecalis JH1] gi|256989335|gb|EEU76637.1| DNA-binding response regulator [Enterococcus faecalis E1Sol] gi|256991993|gb|EEU79295.1| DNA-binding response regulator [Enterococcus faecalis Fly1] gi|256995823|gb|EEU83125.1| DNA-binding response regulator [Enterococcus faecalis D6] gi|256997250|gb|EEU83770.1| two component system response regulator [Enterococcus faecalis CH188] gi|257159208|gb|EEU89168.1| DNA-binding response regulator [Enterococcus faecalis ARO1/DG] gi|257160711|gb|EEU90671.1| DNA-binding response regulator [Enterococcus faecalis T11] gi|257163126|gb|EEU93086.1| DNA-binding response regulator [Enterococcus faecalis X98] gi|291077899|gb|EFE15263.1| regulatory protein VanR [Enterococcus faecalis R712] gi|291082386|gb|EFE19349.1| regulatory protein VanR [Enterococcus faecalis S613] gi|294451669|gb|EFG20124.1| putative regulatory protein VanR [Enterococcus faecalis PC1.1] gi|295112307|emb|CBL30944.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Enterococcus sp. 7L76] gi|300848948|gb|EFK76701.1| response regulator receiver domain protein [Enterococcus faecalis TUSoD Ef11] gi|306498978|gb|EFM68470.1| putative regulatory protein VanR [Enterococcus faecalis TX0411] gi|306502384|gb|EFM71661.1| putative regulatory protein VanR [Enterococcus faecalis TX0109] gi|306503364|gb|EFM72613.1| putative regulatory protein VanR [Enterococcus faecalis TX0860] gi|306509252|gb|EFM78312.1| putative regulatory protein VanR [Enterococcus faecalis TX0855] gi|306514785|gb|EFM83335.1| putative regulatory protein VanR [Enterococcus faecalis TX4248] gi|310625297|gb|EFQ08580.1| putative regulatory protein VanR [Enterococcus faecalis DAPTO 512] gi|310629118|gb|EFQ12401.1| putative regulatory protein VanR [Enterococcus faecalis TX0102] gi|310633659|gb|EFQ16942.1| putative regulatory protein VanR [Enterococcus faecalis TX0635] gi|311287680|gb|EFQ66236.1| putative regulatory protein VanR [Enterococcus faecalis DAPTO 516] gi|311291577|gb|EFQ70133.1| putative regulatory protein VanR [Enterococcus faecalis TX0470] gi|315026614|gb|EFT38546.1| putative regulatory protein VanR [Enterococcus faecalis TX2137] gi|315033601|gb|EFT45533.1| putative regulatory protein VanR [Enterococcus faecalis TX0017] gi|315036266|gb|EFT48198.1| putative regulatory protein VanR [Enterococcus faecalis TX0027] gi|315143581|gb|EFT87597.1| putative regulatory protein VanR [Enterococcus faecalis TX2141] gi|315148281|gb|EFT92297.1| putative regulatory protein VanR [Enterococcus faecalis TX4244] gi|315151246|gb|EFT95262.1| putative regulatory protein VanR [Enterococcus faecalis TX0012] gi|315153731|gb|EFT97747.1| putative regulatory protein VanR [Enterococcus faecalis TX0031] gi|315155043|gb|EFT99059.1| putative regulatory protein VanR [Enterococcus faecalis TX0043] gi|315158668|gb|EFU02685.1| putative regulatory protein VanR [Enterococcus faecalis TX0312] gi|315163391|gb|EFU07408.1| putative regulatory protein VanR [Enterococcus faecalis TX0645] gi|315165670|gb|EFU09687.1| putative regulatory protein VanR [Enterococcus faecalis TX1302] gi|315168477|gb|EFU12494.1| putative regulatory protein VanR [Enterococcus faecalis TX1341] gi|315172094|gb|EFU16111.1| putative regulatory protein VanR [Enterococcus faecalis TX1342] gi|315174227|gb|EFU18244.1| putative regulatory protein VanR [Enterococcus faecalis TX1346] gi|315576189|gb|EFU88380.1| putative regulatory protein VanR [Enterococcus faecalis TX0309B] gi|315579768|gb|EFU91959.1| putative regulatory protein VanR [Enterococcus faecalis TX0630] gi|315583000|gb|EFU95191.1| putative regulatory protein VanR [Enterococcus faecalis TX0309A] gi|323479197|gb|ADX78636.1| response regulator protein, vanR type [Enterococcus faecalis 62] gi|327536388|gb|AEA95222.1| response regulator [Enterococcus faecalis OG1RF] Length = 229 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 44/227 (19%), Positives = 91/227 (40%), Gaps = 9/227 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD + + ++G + + D+ + ++ + Sbjct: 3 ILVADDDKEIVELLSIYIHNEGYEVVKAYDGKEALSKL-HTTPDIDLLILDIMMPIMDGM 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + +R SQ+P+I ++ + + +G DD V KP + E++ARV +I RR ++ Sbjct: 62 EVVKELRKESQIPIIMLTAKTTDMDKIKGLVAGADDYVTKPFNPLEVMARVKSILRRSQM 121 Query: 122 SNNRAETGP------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + E + ++G+ L E IL L ++ + + +IF Sbjct: 122 QLTKEEPDELEVGPLMINKDSHEVKTIEGKEIQLTALEFGILYLLASHPNRVFSADEIFE 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221 ++ + V V H+S LR K+ G + + +GY ID Sbjct: 182 RVW-QQESIVSAKTVMVHVSHLRDKIEEATGGEKVIQTVWGVGYKID 227 >gi|15614371|ref|NP_242674.1| two-component response regulator [Bacillus halodurans C-125] gi|10174426|dbj|BAB05527.1| two-component response regulator [Bacillus halodurans C-125] Length = 231 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 49/228 (21%), Positives = 86/228 (37%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD ++D +G + + + + D+ ++ Sbjct: 6 ILVADDEQEIRDLIAIHLEKEGYHVIKVSDGKEAVDVIGRQVIDLLILDIM--MPNIDGY 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR +P+I +S S + G DD + KP E++ARV A RR K Sbjct: 64 EVARQIREQHNMPIIFLSAKTSDFDKVQGLVIGADDYMTKPFAPIELVARVNAQLRRFKK 123 Query: 122 SNNRAETGPIRVFS-------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N + + R + GE L +E IL L ++ K + IF Sbjct: 124 LNQPKPDRITTLEFGGLVIAPEQRKVTLYGETIELTPKEFEILYLLASHPKKVYSVENIF 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSID 221 ++G N V H+ LRKKL++ + + +GY+ + Sbjct: 184 HQVWGEAYFEGG-NTVMVHVRTLRKKLKDDQRKSKWIKTVWGVGYAFN 230 >gi|329116636|ref|ZP_08245353.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Streptococcus parauberis NCFD 2020] gi|326907041|gb|EGE53955.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Streptococcus parauberis NCFD 2020] Length = 239 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 86/228 (37%), Gaps = 13/228 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L+DD + +G E L + D ++ L +E Sbjct: 6 LLVDDEEHILRLLDYHLAKEGYQTELVGDGRSALKLAETEHFDFILLDIML--PQLDGIE 63 Query: 63 LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARVA 113 + + IRA P++ +S + + G DD + KP RE + Sbjct: 64 VCKRIRAKGITTPIMMVSAKGDEFDKVLALELGADDYLTKPFSPRELIARVKAILRRTEK 123 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 +S+ + +RVF D + ++ L +E +L YL+ + + + ++ Sbjct: 124 DQTDDNDLSDEQWVVNGLRVFPDRHEVYKDNDMLNLTPKEYELLLYLIKHPNMTLTRERL 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 I+G +D E +V+ HI KLR+K+ + + + R GY Sbjct: 184 LERIWG-YDFGQETRLVDVHIGKLREKVEDDPKNPKFIKTIRGYGYKF 230 >gi|227498372|ref|ZP_03928522.1| two-component system transcriptional regulator [Acidaminococcus sp. D21] gi|226903834|gb|EEH89752.1| two-component system transcriptional regulator [Acidaminococcus sp. D21] Length = 274 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 49/225 (21%), Positives = 88/225 (39%), Gaps = 7/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++D +++ + F E + D+ ++ L G G ++ Sbjct: 50 IYCVEDDENIRELVAYALESQQFETQTFADGESFYKVLEKKIPDLVLLDIMLPGESGIEI 109 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH---REILARVAAIYR 117 L+ R + +P+I ++ S + G DD V KP + V Sbjct: 110 LKKIRHKERTADLPVIMLTARTSEYDVVKGLTIGADDYVTKPFGILELISRIRAVLRRSH 169 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 R++ + GP+ + GE L +E +L YLM N G + + QI ++ Sbjct: 170 RVEKPSEMLVCGPVTLDPLKHAVSAYGEEVMLTAKEFELLHYLMMNVGIVLQREQIMESV 229 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +G F A E ++ HI LR+KL G + + R +GY +D Sbjct: 230 WG-FTYAGESRTIDMHIKSLRQKLGE--GGQIIKTIRGVGYRLDE 271 >gi|251799571|ref|YP_003014302.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247547197|gb|ACT04216.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 233 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 44/230 (19%), Positives = 85/230 (36%), Gaps = 13/230 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD + + ++G + + L + + ++ L Sbjct: 6 ILIADDDLEIAELIKIYLTNEGYQVLIAGNGREAMELIAKESVQLMILDVM--MPEMNGL 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-------- 113 E+ R +RA +P++ +S + +G DD + KP + E++ARV Sbjct: 64 EVVRAVRAEYGIPILMLSAKAEDMDKIMGLTTGADDYMVKPFNALELIARVKSLLRRSIY 123 Query: 114 -AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + + +++ V+ L E IL L ++ G+ + Sbjct: 124 LNTQLQTAQDQDIIQIHSLKISKKSHTVTVEDRGINLTSTEFDILYLLASHPGQVFSAEA 183 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 IF A++ N V HISKLR KL G + + +GY I+ Sbjct: 184 IFEAVW-KDRFLESNNTVMVHISKLRDKLESELGGVKLIQTVWGVGYKIE 232 >gi|167745958|ref|ZP_02418085.1| hypothetical protein ANACAC_00653 [Anaerostipes caccae DSM 14662] gi|317473358|ref|ZP_07932653.1| response regulator receiver domain-containing protein [Anaerostipes sp. 3_2_56FAA] gi|167654473|gb|EDR98602.1| hypothetical protein ANACAC_00653 [Anaerostipes caccae DSM 14662] gi|316899194|gb|EFV21213.1| response regulator receiver domain-containing protein [Anaerostipes sp. 3_2_56FAA] Length = 233 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 44/229 (19%), Positives = 84/229 (36%), Gaps = 11/229 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + D ++ + + S + D++ ++ L E Sbjct: 7 LVVDDEKEIADFIELYLKNENYEVFKYYSGAGALECVKQEQIDLAILDVML--PDIDGFE 64 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + IR P+I ++ + ++ G DD + KP E++ARV A RR Sbjct: 65 ILKEIRKDHNFPVIMLTAKTASMDKINGLTLGADDYIEKPFEPLELMARVKAQLRRFIRY 124 Query: 123 NNRAETGPIRV--------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N+ + + E L E IL L N+GK ++ +F Sbjct: 125 NDGSGQSSEDTLEIAGLVLNRNTHQCLYGEEEVTLTPLEFSILWILTKNKGKVISSENLF 184 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222 ++ N V HI LR+KL + + + +GY ++ Sbjct: 185 EQVWKEKYFKNNNNTVMVHIRHLREKLGEVMGHKELIKTVWGVGYKVEE 233 >gi|296156388|ref|ZP_06839226.1| two component transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] gi|295892987|gb|EFG72767.1| two component transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] Length = 268 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 48/228 (21%), Positives = 89/228 (39%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + D D+ + L D ++ L G L Sbjct: 27 ILIVEDDVDIADVLSLHLRDERYEVVHSADGNEGLRLLEQGGWDALILDLML--PGVDGL 84 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R RA P+I S S + + G DD + KP E++ARV A+ RR+ Sbjct: 85 EICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVD 144 Query: 121 VSNNRAETGPI-------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + R+ G+ L RE +L Y + GK ++ + Sbjct: 145 ALAKDSRIEAGSLRLAGLSIDPLTREAAADGKPIELTPREFDLLYYFAQHPGKVFSRMDL 204 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 +A++G + E+ V +HI++LR K+ + + + + GY + Sbjct: 205 LNAVWG-YQHEGYEHTVNTHINRLRAKIEADPAQPERILTVWGRGYKL 251 >gi|228926973|ref|ZP_04090039.1| Two-component response regulator vanR [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228832708|gb|EEM78279.1| Two-component response regulator vanR [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 242 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 38/229 (16%), Positives = 83/229 (36%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +G + + E + ++ ++ ++ + Sbjct: 16 ILIVDDDQDIVRFMNVNLMQEGFKVFSAYNGEEALEIINNNSIQLAILDIM--MPQMDGI 73 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNK--------PIHHREILARVA 113 EL R IR +P+I +S S + F +G DD + K ++ Sbjct: 74 ELCRRIREKHSLPIIFLSAKSSDVDKVVGFSTGADDYIVKLFSTIEFIARVKAQLRRYTY 133 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 ++V + + + R + GE L + E IL + A + + +I Sbjct: 134 FNQHAVQVIEKKINIRGLEIDEVSRTVMLYGETINLTKTEYDILFLMAAAKNRVFTIEEI 193 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + +++ N V HI++LR K+ + + +GY I+ Sbjct: 194 YESVWKERAYE-SNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIE 241 >gi|228990099|ref|ZP_04150071.1| Two-component response regulator vanRB [Bacillus pseudomycoides DSM 12442] gi|228769627|gb|EEM18218.1| Two-component response regulator vanRB [Bacillus pseudomycoides DSM 12442] Length = 228 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 45/223 (20%), Positives = 93/223 (41%), Gaps = 9/223 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D +++ ++ + + D+ ++ Sbjct: 13 ILVVEDDQEIQELIKQFLMTQQYAVTVASDGLEGMKQFNKQSFDLILLDVM--MPNLNGF 70 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119 E+ ++IR+ S +P+I ++ Q + FD G+DD + KP ++ RV A Sbjct: 71 EVAKMIRSQSNIPIIMLTALEEEQDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSYD 130 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + N I V D V PL +E IL+ L+ N+ K + + I ++G Sbjct: 131 QSTENHLFFKEIHVDCDAYKVYVNEVEIPLTAKEFEILQLLLQNKKKVITRESIVEKVWG 190 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 ++ E ++++HI +RKKL + + + +GY ID Sbjct: 191 -YEYHGETRMIDTHIKNIRKKLD----ISYIKTVKGIGYKIDE 228 >gi|225574441|ref|ZP_03783051.1| hypothetical protein RUMHYD_02510 [Blautia hydrogenotrophica DSM 10507] gi|225038326|gb|EEG48572.1| hypothetical protein RUMHYD_02510 [Blautia hydrogenotrophica DSM 10507] Length = 232 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 46/230 (20%), Positives = 88/230 (38%), Gaps = 13/230 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D ++ ++ + S D++ ++ L G Sbjct: 5 ILVVDDEHDIADLLEVYLKNENYTVYKYYSAMEALECIEREELDLAILDIML--PGVDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + IR P+I ++ + G DD V KP E++ARV A RR K Sbjct: 63 SICQKIRERYTYPIIMLTAKDEETDKITGLTLGADDYVTKPFRPLELVARVKAQLRRYKK 122 Query: 122 SNNRAETGPIRV----------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + +E + + + GE+ L E IL+ L+ G V+ Sbjct: 123 YSPVSEVETQKTTRLSYKKLELDMKTYECLLDGELVALTPTEFSILQLLLKQAGNVVSLE 182 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 ++F +++ + + HI LR+KLR+ + + +GY I Sbjct: 183 ELFRSVWKDEYYNKNSSTITVHIRHLREKLRDTGANPTYIKTIWGVGYKI 232 >gi|254525273|ref|ZP_05137328.1| Two component Transcriptional regulator, Winged helix family [Stenotrophomonas sp. SKA14] gi|219722864|gb|EED41389.1| Two component Transcriptional regulator, Winged helix family [Stenotrophomonas sp. SKA14] Length = 245 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 47/225 (20%), Positives = 94/225 (41%), Gaps = 9/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L++D + + + G +++ + ++ ++ L G ++ Sbjct: 18 LLVEDDRRLAELVSDYLREHGFAVQHLARGDLAGAACRQHAPELVVLDLML--PGLGGID 75 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR+ S VP++ ++ + +SG DD V+KP+ R +LAR+ A+ RR S Sbjct: 76 VCRQIRSFSDVPILMLTACEDDIEQVLGLESGADDFVHKPVEPRLLLARLRALLRRRHGS 135 Query: 123 NNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + R+ + G L E IL L + G+ +++ QI A+ Sbjct: 136 STSGTPCRLMHGELLIDRMQREVHLHGLPVELGTTEFEILWLLASQPGQILSRDQILQAV 195 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 G+ + V+ I KLR+KL + + + GY + Sbjct: 196 RGIG-FDGLDRSVDVSIGKLRRKLGDDAREPRRIKTVWGRGYQFN 239 >gi|194290067|ref|YP_002005974.1| DNA-binding response regulator in two-component regulatory system with phor [Cupriavidus taiwanensis LMG 19424] gi|193223902|emb|CAQ69911.1| DNA-binding response regulator in two-component regulatory system with PhoR [Cupriavidus taiwanensis LMG 19424] Length = 235 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 45/226 (19%), Positives = 83/226 (36%), Gaps = 8/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++++D + + G + E L S D+ ++ L G G Sbjct: 5 ILVVEDEPAIAELIAVNLQHAGHYPIRAYNAEQALSLMSDVLPDLVLLDWMLPGKSGANF 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAA 114 + R Q+P+I ++ Q + ++G DD V KP +E+ + R A Sbjct: 65 AKELRANDRTRQIPIIMLTARGEEQDKVMGLEAGADDYVTKPFSPKELLARIKAVLRRRA 124 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 V E L E R+L +LM + + +++Q+ Sbjct: 125 PQLTDDVVAINGLRLDPATHRVTGQDESGPIKLDLGPTEFRLLHFLMTHPERVHSRSQLL 184 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G VEE V+ HI +LR L + +++ R GY + Sbjct: 185 DQVWGDH-VFVEERTVDVHIKRLRAALTPGGYSNMIETVRGSGYRL 229 >gi|108803040|ref|YP_642977.1| two component transcriptional regulator [Rubrobacter xylanophilus DSM 9941] gi|108764283|gb|ABG03165.1| two component transcriptional regulator, winged helix family [Rubrobacter xylanophilus DSM 9941] Length = 227 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 51/221 (23%), Positives = 94/221 (42%), Gaps = 5/221 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + G S E + DV ++ L G E Sbjct: 4 LIVEDEPGIVRMLERGLSAQGYSCLSAEDGETGLRMALEEDVDVVLLDIML--PGLDGRE 61 Query: 63 LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120 + R +R +P++ ++ ++T + D+G DD + KP E+LAR+ A + R + Sbjct: 62 VLRRLRLRRPGLPVLMLTARDEVETKVGSLDAGADDYLTKPFAFEELLARIRALVRRADQ 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + G +++ R G L RE +LEYLM + + +++ QI SA++ Sbjct: 122 PESTALRAGDLKLDLLSRRVWRAGRQVELSSREFALLEYLMRHPRQVLSRQQILSAVWD- 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + NVV+ ++ LR+KL + + R GY D Sbjct: 181 YAFDPGSNVVDVYVRYLRRKLDRPGEPSLITTVRGAGYRFD 221 >gi|331700440|ref|YP_004397399.1| winged helix family two component transcriptional regulator [Lactobacillus buchneri NRRL B-30929] gi|329127783|gb|AEB72336.1| two component transcriptional regulator, winged helix family [Lactobacillus buchneri NRRL B-30929] Length = 238 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 46/229 (20%), Positives = 91/229 (39%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + E D+ ++ L L Sbjct: 5 ILVVDDEKPIVDIEKFNLTKEGYEVSVAYDGEEALQQVKDVDPDLIILDLML--PKVDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R P+I ++ S + + G DD V KP +RE++ARV A RR Sbjct: 63 EVAREVRKTKDTPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQGT 122 Query: 122 SNNRAETGPIRVF---------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 +++ + +GE L RE +L YL + G+ + + Sbjct: 123 NSSSNNEEDENKDIKIGDLVIHPEAYSVSKRGENIELTHREFELLHYLAQHIGQVMTREH 182 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + ++G +D + V+ + +LR+K+ + + ++R +GY + Sbjct: 183 LLQTVWG-YDYFGDVRTVDVTVRRLREKVEDSPSHPTWLVTRRGVGYYL 230 >gi|329766938|ref|ZP_08258466.1| hypothetical protein HMPREF0428_00163 [Gemella haemolysans M341] gi|328837663|gb|EGF87288.1| hypothetical protein HMPREF0428_00163 [Gemella haemolysans M341] Length = 238 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 37/231 (16%), Positives = 85/231 (36%), Gaps = 14/231 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ + +G ++ ++ ++ L Sbjct: 5 ILIVDDEERIRKLLVMYLEKEGYIVDEASNGHDGLERLKYMDYSCVLLDVQLPM--LNGK 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL---------ARV 112 + +R P+I +S Q+ ++ F+ G DD V KP RE++ + Sbjct: 63 SILSELRKTKATPVIIMSAQADEQSRVEGFELGADDYVIKPFSPRELMLRINAILQRTKR 122 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + Y + + + + + V+ L +E +L +L + K + + Sbjct: 123 SVFYTPELYTKDVLVFPGLIIDVNSHKVIVEDSEVLLTPKEFDLLLFLAKSPDKAFKRNE 182 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF--DPVDSKRFLGYSID 221 I A++ +D + V++HI ++RKK + + +GY D Sbjct: 183 ILRAVWD-YDFYSDLRTVDTHIKRVRKKFDKISPKVAQMIVTVWGIGYKFD 232 >gi|319652280|ref|ZP_08006398.1| response regulator [Bacillus sp. 2_A_57_CT2] gi|317396103|gb|EFV76823.1| response regulator [Bacillus sp. 2_A_57_CT2] Length = 223 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 41/222 (18%), Positives = 88/222 (39%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ +G + N+ + L D++ ++ G Sbjct: 3 ILVVDDDVNIQKLVTIHLNREGYQVLRANNAQEALALLEEQTADLAVVDVM--MPGMDGF 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-ILARVAAIYRRLK 120 EL R++ +P+I ++ L F SG +D + KP RE + + R + Sbjct: 61 ELTRLLTNDFGIPVILLTAKGQLGDKEQGFLSGSEDYIVKPFEVRELLFRVAVVLRRAER 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + G + + + E+ E P +E +L L A + K + + +G Sbjct: 121 AMETVIKAGNLLMDRKSFEVEINQETILFPLKEFELLSLLSARKSKITQRAALIEQAWG- 179 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 D E + +HI+++R +L+ + + R +GY ++ Sbjct: 180 SDYEGSEQTLNTHINRIRDRLKKYGATVEIQTVRGIGYKLEE 221 >gi|295704707|ref|YP_003597782.1| two-component response regulator [Bacillus megaterium DSM 319] gi|294802366|gb|ADF39432.1| two-component response regulator [Bacillus megaterium DSM 319] Length = 227 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 40/226 (17%), Positives = 84/226 (37%), Gaps = 9/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D + + + ++ S + + D+ ++ L Sbjct: 4 ILLIEDEVSIAELQRDYLEINDFEIDVQYSGDKGLEKALNEHFDLVILDIML--PKVSGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAIY 116 E+ + IRA +P+I +S + G DD + KP R Sbjct: 62 EVCKQIRAAKDIPIILVSAKKEEIDKIRGLGLGADDYITKPFSPGELVARVKAHLARYER 121 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 K + + + R V + +E +L++++++ + ++K +F Sbjct: 122 LSDKQEKRMIHIHGLAIDTLARRVFVNDKEVFFTAKEFDLLKFIVSHPNQVLSKEHLFEK 181 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 I+G FD + + + V HI KLR+KL +++ GY + Sbjct: 182 IWG-FDSSGDISTVTVHIRKLREKLEENPADPQYLETVWGAGYRFN 226 >gi|160936100|ref|ZP_02083473.1| hypothetical protein CLOBOL_00996 [Clostridium bolteae ATCC BAA-613] gi|158440910|gb|EDP18634.1| hypothetical protein CLOBOL_00996 [Clostridium bolteae ATCC BAA-613] Length = 238 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 42/233 (18%), Positives = 85/233 (36%), Gaps = 16/233 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D +++G G ++ + D++ ++ + Sbjct: 8 ILLVEDDKEIREGVEIFLKSQGYAVFQAADGVEGLKVLEEREIDLAIVDVM--MPRMDGI 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + +R P+I +S + + G DD + KP E++ARV + RR Sbjct: 66 TMTAKLREKYDFPVIFLSAKSEEVDKILGLNMGADDYITKPFTPMELMARVNSQLRRYHR 125 Query: 122 SNNRAETGPIRV-----------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 +R + + + V + + E +IL L+ N G+ Sbjct: 126 FLDRLNSKQTENPKVHRLGGLEVNEETVEVTVDDKTVKVTPIEFKILLLLIQNPGRVFPA 185 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 +I+ ++ + AV + V HI LR+K+ N V +GY I+ Sbjct: 186 EEIYERVWN--ERAVNTDTVMVHIRNLREKIEVNPREPKYVKVVWGVGYKIEK 236 >gi|15893814|ref|NP_347163.1| response regulator [Clostridium acetobutylicum ATCC 824] gi|15023387|gb|AAK78503.1|AE007567_5 Response regulator (CheY-like and HTH domains) [Clostridium acetobutylicum ATCC 824] gi|325507938|gb|ADZ19574.1| Response regulator (CheY-like and HTH domains) [Clostridium acetobutylicum EA 2018] Length = 228 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 41/220 (18%), Positives = 90/220 (40%), Gaps = 3/220 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 L++D + L +G ++ ++ + D++ I+ L Sbjct: 4 IFLVEDDKAIAKNLTLLLRSEGFTVNHASTRSDAIGALDGNKFDLALIDISL--PDGNGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + I+ VP+I ++ + + + G DD + KP RE++AR+ R+ Sbjct: 62 TVCTEIKEKQDVPVIFLTASGDESSVVTGLNMGADDYITKPFRPRELIARIRTALRKSGS 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 S + E + V + + +G L E R+L + N + ++++ ++ Sbjct: 122 SPSSFEICGLHVDTASGIVKKEGREIFLSALEYRLLLVFINNNKSIITRSRLLDELWDAA 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 E V +N + +I +LR+K+ N + + + R GY + Sbjct: 182 GEFVNDNTLTVYIKRLREKIENNPASPEIILTVRGTGYRL 221 >gi|229543409|ref|ZP_04432469.1| two component transcriptional regulator, winged helix family [Bacillus coagulans 36D1] gi|229327829|gb|EEN93504.1| two component transcriptional regulator, winged helix family [Bacillus coagulans 36D1] Length = 224 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 46/224 (20%), Positives = 90/224 (40%), Gaps = 6/224 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L+DD + D G + + D+ ++ Sbjct: 4 LLLVDDEERMLDLLALYLEPAGYACDKVTRGPEAIRYIQEETYDLILLDIM--MPETDGW 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120 E+ R IR SQVP+I ++ + G DD ++KP +E+LAR+ A+ R + Sbjct: 62 EVCRQIRKMSQVPVIMLTARTDKPDVVKGLKIGADDYISKPFDEKELLARIDAVLRRSNQ 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 N E ++ Q + + +E +L + + + ++ Q+ ++I+G Sbjct: 122 NQNETIEKNGLKWDPVSFQVFYQNQPVSVTPKEFAMLGLFLQHPNQVFSREQLLTSIWG- 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGF--DPVDSKRFLGYSIDW 222 ++ E+ ++SHI +R KLRN + + +GY W Sbjct: 181 YEVETEDRTIDSHIRNVRDKLRNAGFPVDSHLQTVWGVGYKWVW 224 >gi|261366404|ref|ZP_05979287.1| phosphate regulon transcriptional regulatory protein Phob [Subdoligranulum variabile DSM 15176] gi|282571664|gb|EFB77199.1| phosphate regulon transcriptional regulatory protein Phob [Subdoligranulum variabile DSM 15176] Length = 230 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 33/222 (14%), Positives = 85/222 (38%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + DG + + D+ ++ L Sbjct: 4 ILIVEDDSFLNKMLTYNLTADGYGVTSALNARTAADAIRQREFDLVLLDVNL--PDGNGF 61 Query: 62 ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL R+I H +I ++ + ++ G D + KP R + ++ A++ L+ Sbjct: 62 ELCRLIKPQHPDTIIIFLTANDQESDQIRGYEVGAVDYITKPFVLRALQRKIKAMFAMLE 121 Query: 121 VSNNRAETGPI---RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + + + G+ L E ++L N + + + Q+ + Sbjct: 122 HHKPAKDIYDDGRLFLDFSEQAASLNGKPLTLSPMEYKMLNLFRKNPRQVLTRGQLLEKL 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 + + ++ V+E+ + + IS++R K+ + G + + +GY Sbjct: 182 WDIDEKYVDEHTLTTSISRIRSKIESDGGAPYIKTVYGMGYQ 223 >gi|197123400|ref|YP_002135351.1| transcriptional regulator [Anaeromyxobacter sp. K] gi|196173249|gb|ACG74222.1| two component transcriptional regulator, winged helix family [Anaeromyxobacter sp. K] Length = 234 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 53/223 (23%), Positives = 91/223 (40%), Gaps = 8/223 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L++D + GV++ + R DV ++ L G+ LE Sbjct: 10 LLVEDDLRLAAFTREYLEGHGVAVVHASDGRRGLDEALGGRFDVVLLDLML--PGKDGLE 67 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +R+ S VP+I ++ + + G DD + KP RE+LAR+ A+ RR Sbjct: 68 VCRELRSRSDVPVIVLTARGEEADRVMGLELGADDYLAKPFSPRELLARIRAVVRRATGR 127 Query: 123 NNRAETGPI----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 V R + G L E +L L G+ +A+ Q+ Sbjct: 128 AGPPREVVRVGGLVVDPAARRVTLDGREVALTGYEFALLHALARRAGRVLAREQLMELAG 187 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 G +EA + V+ H+S+LR+KL + + + R GY + Sbjct: 188 GSAEEAFD-RSVDVHVSRLRQKLGDDPRRPRLIKTVRGAGYLL 229 >gi|152967758|ref|YP_001363542.1| two component transcriptional regulator, winged helix family [Kineococcus radiotolerans SRS30216] gi|151362275|gb|ABS05278.1| two component transcriptional regulator, winged helix family [Kineococcus radiotolerans SRS30216] Length = 225 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 45/219 (20%), Positives = 89/219 (40%), Gaps = 5/219 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + + +G+ + + R D+ ++ L G +E Sbjct: 6 LVVDDDTALAEMLGIVLQGEGLETRFCADGDQAVGAFRATRPDLVLLDLML--PGTDGME 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLKV 121 + R IRA S VP++ ++ + ++G DD V KP +E++ARV A + Sbjct: 64 VCRQIRAESGVPIVMLTAKSDTVDVVLGLEAGADDYVVKPFKPKELVARVRARLRSAGER 123 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 G + + G G PL E +L L + + + ++G + Sbjct: 124 PPETLRIGDLTIDVAGHSVRRDGRSLPLTPLEFELLVTLARKPWQAFTRELLLEQVWG-Y 182 Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219 A + +V H+ +LR K+ + + V + R +GY Sbjct: 183 RHAADTRLVNVHVQRLRSKIERDPEHPEIVVTVRGVGYR 221 >gi|239815564|ref|YP_002944474.1| osmolarity response regulator [Variovorax paradoxus S110] gi|239802141|gb|ACS19208.1| two component transcriptional regulator, winged helix family [Variovorax paradoxus S110] Length = 243 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 47/230 (20%), Positives = 92/230 (40%), Gaps = 14/230 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 V++DD A ++D +G + + + D+ ++ GE L Sbjct: 11 IVIVDDDARIRDLLRRYLTQEGFEVIVAEDGKALNRILLRDTVDLIVLDLM--MPGEDGL 68 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R +R A+ + P+I ++ + + G DD + KP + RE+LARV A+ RR Sbjct: 69 SVCRRLRAANDRTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARVHAVLRRRP 128 Query: 121 V---------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 N GP R + GE L E +L+ L+ + + +++ Sbjct: 129 PLEAPGAPSTENETVTFGPFAFDLGSRTLKKDGEELSLTTGEFAMLKALVRHPRQPLSRE 188 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++ G + + ++ IS+LRK + + + + +GY Sbjct: 189 KLAQLARGR-EFEPFDRSLDVQISRLRKLVEADAAAPRYIQTVWGVGYVF 237 >gi|318604580|emb|CBY26078.1| phosphate regulon transcriptional regulatory protein PhoB (SphR) [Yersinia enterocolitica subsp. palearctica Y11] Length = 279 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 38/224 (16%), Positives = 91/224 (40%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A +++ + +G + S D+ ++ L G + Sbjct: 55 ILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRLSEPYPDLVLLDWML--PGGSGI 112 Query: 62 ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 + + ++ +P++ ++ + + + G DD + KP +E++AR+ A+ RR Sbjct: 113 QFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRR 172 Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + E + + + + E ++L + M + + ++ Q+ + Sbjct: 173 ISPMAVEEVIEMQGLSLDPSSHRVMANDQALDMGPTEFKLLHFFMTHPERVYSREQLLNY 232 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + VE+ V+ HI +LRK L V + R GY Sbjct: 233 VWGT-NVYVEDRTVDVHIRRLRKALEIDGHDRMVQTVRGTGYRF 275 >gi|300214110|gb|ADJ78526.1| Two-component response regulator [Lactobacillus salivarius CECT 5713] Length = 229 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 44/227 (19%), Positives = 93/227 (40%), Gaps = 9/227 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + ++G +E + + + D++ + ++ + Sbjct: 3 ILIVDDDKDIVELLSIYVENEGYEVEKVYNGKEALSKL-NMNPDIALMILDVMMPQMDGM 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R SQ+P++ +S + G DD V KP + E++ARV ++ RR + Sbjct: 62 EVIREVRKESQIPVLILSAKTDDLDKIQGLVQGADDYVTKPFNPLEVMARVKSLLRRAEH 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQG------EVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + E I + + + L E IL L ++ + + +IF Sbjct: 122 NVKNNEPDQIEIGPLIIKKDSHEVKTLEGKEIKLTALEFGILHLLASHSNRVFSADEIFE 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 ++ + V V H+S LR K+ + G + + +GY I+ Sbjct: 182 RVW-QQESVVSAKTVMVHVSHLRDKIEDATNGEQVIQTVWGVGYKIE 227 >gi|302188560|ref|ZP_07265233.1| response regulator receiver:transcriptional regulatory protein, C-terminal [Pseudomonas syringae pv. syringae 642] Length = 227 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 44/221 (19%), Positives = 82/221 (37%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + G S ++ + + ++ L G + Sbjct: 10 ILIVEDEPKLASLMRDYLIAAGYSTHCLSNGLDVVPAVRANAPQLILLDIML--PGRNGM 67 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + +R+ S VP++ I+ L D G DD + KP RE + R Sbjct: 68 DICKELRSFSDVPIVMITARVEEIDRLLGLDLGADDYICKPFSPRE-MVARVKAILRRSS 126 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 S+ + V G L E R+L + G+ ++ + +Y Sbjct: 127 SSEPHTPKGLLVDEAHYQASFNGVTLDLTPVELRLLATFARSPGRVFSRDHLLDRLYSDH 186 Query: 182 DEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221 V + V+SHI LR+KL G DP+ S +GY ++ Sbjct: 187 -RVVTDRTVDSHIRNLRRKLEQACPGQDPIQSLYGVGYKLE 226 >gi|283785895|ref|YP_003365760.1| two-component response regulator [Citrobacter rodentium ICC168] gi|282949349|emb|CBG88960.1| two-component response regulator [Citrobacter rodentium ICC168] Length = 240 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 46/224 (20%), Positives = 88/224 (39%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + I + + + D+ ++ L G L Sbjct: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLIDHGDRVLPWVRQTPPDLILLDLML--PGTDGL 70 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 L R IR S+VP++ ++ L + G DD + KP RE++ARV + Sbjct: 71 TLCREIRRFSEVPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + P+ V +G++ L E R+L+ L GK ++ Q+ + +Y Sbjct: 131 QRELQQMDAESPLIVDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190 Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + V + ++SHI LR+KL + + +GY + Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLEALDEEQSFIRAVYGVGYRWE 233 >gi|229172566|ref|ZP_04300125.1| Two-component response regulator vanR [Bacillus cereus MM3] gi|228611037|gb|EEK68300.1| Two-component response regulator vanR [Bacillus cereus MM3] Length = 247 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 40/229 (17%), Positives = 85/229 (37%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + A +G + ++ E + ++ ++ ++ + Sbjct: 21 ILIVDDDQDIIRFVKANLMQEGFKVFSAHNGERALEIINNNSIKLAILDIM--MPQMDGI 78 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARVA 113 EL R IR +P++ +S S + F +G DD + KP E Sbjct: 79 ELCRRIREKHSLPIMFLSAKTSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 138 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 ++V + + + R + GE L + E IL + A + + +I Sbjct: 139 FNQNAVQVIEKKINIRGLEIDEVSRTVVLYGETINLTKTEYDILYLMAAAKNRVFTIEEI 198 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + +++ N V HI++LR K+ + + +GY I+ Sbjct: 199 YESVWKERAYE-SNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIE 246 >gi|163856778|ref|YP_001631076.1| two-component response regulator [Bordetella petrii DSM 12804] gi|163260506|emb|CAP42808.1| two-component response regulator [Bordetella petrii] Length = 238 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 50/228 (21%), Positives = 90/228 (39%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + D D+G + E + R D ++ L G L Sbjct: 5 ILIVEDDVHIADLLQLHLRDEGYEVTHAAEGETGLRQLEAGRWDALVLDLML--PGIDGL 62 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ + RA P+I S S + + G DD + KP E++AR+ A+ RR Sbjct: 63 EICKRARAMARYTPIIITSARSSEVHRILGLELGADDYLAKPFSMLELVARIKALLRRTD 122 Query: 121 VSNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 A R + RD V G+ L RE +L + + GK ++ + Sbjct: 123 ALERNARLDAGRLEVSGLSIDPVTRDATVDGQPLDLTPREFDLLYFFARHPGKVFSRMDL 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + ++G + E+ V +HI++LR K+ + + + GY Sbjct: 183 LNQVWG-YQHEGYEHTVNTHINRLRTKIEADPSEPSRILTVWGRGYKF 229 >gi|296117440|ref|ZP_06836028.1| two component transcriptional regulator, winged helix family protein [Gluconacetobacter hansenii ATCC 23769] gi|295976042|gb|EFG82832.1| two component transcriptional regulator, winged helix family protein [Gluconacetobacter hansenii ATCC 23769] Length = 226 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 49/223 (21%), Positives = 96/223 (43%), Gaps = 6/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D V++ + G E ++ + +L S + D+ ++ L G G L Sbjct: 3 ILVVEDDPTVRNFVAKGLREAGHLTELTDNGKDGLFLAVSEKFDLIILDRMLPG-GIDGL 61 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYR 117 L IRA + P++ +S + + +G DD V KP E + + R Sbjct: 62 RLLETIRAQNNATPVLLLSALADVDDRVQGLKAGGDDYVTKPFAFSELLARVEALGRRGR 121 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + + + R G+ L RE R+LEYL + G+ V +T + + Sbjct: 122 TEQAPQTKLVVADLEIDLLSRTVRRAGQKIDLQPREFRLLEYLTRHAGQVVTRTMLLEGV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + + NV++ H+S+LR+K+ G + + R GY + Sbjct: 182 WD-YHFDPQTNVIDVHVSRLRQKVDKPFGMPLIHTIRNAGYML 223 >gi|295091309|emb|CBK77416.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Clostridium cf. saccharolyticum K10] Length = 247 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 41/225 (18%), Positives = 86/225 (38%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD V+ + + G + + S + ++ + G Sbjct: 20 ILIADDDPAVRRLLMRVVEGSGFKAQTASDGLEAVRAAQSGEFALILLDIMMNGND-DGF 78 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIY 116 + +R P++ +S TL D G DD V+KP + +I A V Sbjct: 79 HAIKKLRESGNTTPIMVLSGRSGDFDTLYGLDIGADDYVSKPFNPVILGAKIKALVRRSQ 138 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + GP + + G L RE ++ +++ G+ +K Q++ Sbjct: 139 AGREEAGEILTAGPFLYNTLTMEFSKNGIPISLSSREHVLMRLFLSHPGQVFSKEQLYEL 198 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++ + AV++NV+ +IS LR K+ + + + +GY+ Sbjct: 199 VWN--NTAVDDNVIMVYISHLRNKIEDSPKNPRFIKTVWGIGYTF 241 >gi|228910661|ref|ZP_04074472.1| Two-component response regulator [Bacillus thuringiensis IBL 200] gi|228848929|gb|EEM93772.1| Two-component response regulator [Bacillus thuringiensis IBL 200] Length = 229 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 51/227 (22%), Positives = 89/227 (39%), Gaps = 12/227 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++++ F + + + + D+ ++ L Sbjct: 5 ILIVEDEDILREILKDYFLSEQYVVFEARDGKEALAVFEEEEVDLVILDIML--PELDGW 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR-------EILARVAA 114 + R IR S+VP+I ++ TL F+ G DD V KP +L A Sbjct: 63 SVCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKA 122 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + L+ ++ I V R V L E IL Y M N+G + + Q+ Sbjct: 123 SKKPLENEDDMLSIHGIHVHFPSRTVTVDEADVSLTHTEFEILVYFMKNQGIVLTREQLI 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 S I+G ++ A ++ V SHI LR KL K + + GY + Sbjct: 183 SRIWG-YEFAGDDRTVNSHIRNLRNKLGEK--AKYITTVVRTGYKFE 226 >gi|229172679|ref|ZP_04300237.1| DNA-binding response regulator [Bacillus cereus MM3] gi|228610811|gb|EEK68075.1| DNA-binding response regulator [Bacillus cereus MM3] Length = 218 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 36/218 (16%), Positives = 89/218 (40%), Gaps = 4/218 (1%) Query: 6 DDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPR 65 DD +++ +G + D+ ++ ++ Sbjct: 2 DDDPHIRELVSVFLEREGFQTYEAIDGLDALKKIDEVKVDMVILDIM--MPNMDGFDVCF 59 Query: 66 IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125 +R + +P++ ++ + F G DD + KP E++ RV A+ +R +++ ++ Sbjct: 60 ELRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQITVSQ 119 Query: 126 AETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEA 184 + + + + LP +E +L L + G+ ++ Q+ ++G +D Sbjct: 120 SIQVGNVLLNRKTFEVTAGEQTATLPLKEFELLFTLGSKAGRTCSREQLIEDVWG-YDFE 178 Query: 185 VEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 E ++ HI++LR+K + + + + R LGY ++ Sbjct: 179 GNERTLDVHINRLREKFQVEKSKFSIKTIRGLGYRLEV 216 >gi|294339741|emb|CAZ88103.1| Transcriptional regulatory protein ompR [Thiomonas sp. 3As] Length = 245 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 42/233 (18%), Positives = 95/233 (40%), Gaps = 16/233 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ +G +++ + + ++ L GE L Sbjct: 10 ILVVDDDPELRAMLRDYLTGNGFAVDLAAHGDAMRACLAQQMPHAVILDLML--PGEDGL 67 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R +R S +P++ +S + + G DD + KP RE+LAR+ A+ RR + Sbjct: 68 ALARELRRSSDLPILMLSARGEEIDRVIGLEVGADDYLPKPFSPRELLARLRALLRRAQP 127 Query: 122 S------------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 + GP + + G+ L E +L+ ++A+ + ++ Sbjct: 128 TSAGDLPPASKPAEQAVRFGPFLLDAAAFRLLRDGQDVGLSVAEFTLLQAMVAHPNRVLS 187 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221 + Q+ + G ++ + ++ +++LR+K+ + V + R GY + Sbjct: 188 RDQLIDWLKG-YERDAFDRSIDVRVARLRRKIEDDPAHPVYVRTIRGQGYLFN 239 >gi|254694764|ref|ZP_05156592.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella abortus bv. 3 str. Tulya] gi|261215091|ref|ZP_05929372.1| two component transcriptional regulator [Brucella abortus bv. 3 str. Tulya] gi|260916698|gb|EEX83559.1| two component transcriptional regulator [Brucella abortus bv. 3 str. Tulya] Length = 228 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 43/224 (19%), Positives = 89/224 (39%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++D + D+G ++ + E + D+ ++ L G + Sbjct: 7 IAVVEDEEALSVLLRYNLEDEGYQVDTMLRGDEAEIALRESVPDLLILDWML--PGVSGI 64 Query: 62 ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIY 116 EL R +R + P+I ++ + G DD V KP E+ + Sbjct: 65 ELCRRLRQRPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKAMLRR 124 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + ++ + G + + + + L E R+LEY M + G+ +++Q+ Sbjct: 125 ANPSILSHVLKVGDLLLDRQQHRVYRKEKEVHLGPTEFRLLEYFMMSPGRVFSRSQLLDG 184 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G D V++ V+ H+ +LRK + D + + R GYS Sbjct: 185 VWG-PDIYVDDRTVDVHVGRLRKAINVGRAADSIRTVRGAGYSF 227 >gi|153931133|ref|YP_001385668.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|153937245|ref|YP_001389074.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|152927177|gb|ABS32677.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|152933159|gb|ABS38658.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] Length = 230 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 39/227 (17%), Positives = 86/227 (37%), Gaps = 9/227 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + +G + + E S + ++ ++ Sbjct: 5 ILIVDDDKTIVEFLQIFLIKEGYDVRISYNGEEALDKIRSEQFNLILMDIM--MPKLDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-----ARVAAIY 116 E + IR + +P+I ++ S Q + F SG DD + KP E+ Sbjct: 63 EAIKRIRRLTNIPIIFLTTKDSQQDKIKGFISGCDDYITKPFDLVELSLRVSAILKRVST 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + + + + + + L +E IL L N+G+ ++I+ Sbjct: 123 SVAEENKDIIKVKDLELNLKEHTLYKEKNEIKLTPKEFDILFLLARNKGRIFPSSEIYER 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222 ++G + +N + +HI LR+KL + + + +GY I+ Sbjct: 183 VWGQ-EFLENDNSLLTHIRNLREKLSDTVKNSKYIKTVWGVGYKIEK 228 >gi|320527693|ref|ZP_08028865.1| response regulator receiver domain protein [Solobacterium moorei F0204] gi|320131936|gb|EFW24494.1| response regulator receiver domain protein [Solobacterium moorei F0204] Length = 222 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 46/223 (20%), Positives = 94/223 (42%), Gaps = 8/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A +++ +G E + + D ++ Sbjct: 4 ILIVDDEANIREVVREYCEINGFETEEAENGLVAIEKVKNTHFDCVILDVM--MPVLDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 + I++ QVP+I +S L F+ GVDD V KP +E++AR+ ++ Sbjct: 62 STCKQIKSIDQVPVIMLSARQEEYDKLFGFELGVDDYVTKPFSPKELIARIKVVLERGKK 121 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + +++ +++ GR V GE PL +E +L YL + +++ + ++ Sbjct: 122 TQANSDVMIFKGLQIDVLGRVVTVDGEKAPLTPKEIDLLLYLATHPNVALSRETLLVEVW 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +D ++ V++HI LR L D + + R +GY + Sbjct: 182 -NYDYFGDDRTVDTHIKMLRHNLGPY--RDFITTVRGMGYKFE 221 >gi|317470763|ref|ZP_07930147.1| response regulator receiver domain-containing protein [Anaerostipes sp. 3_2_56FAA] gi|316901752|gb|EFV23682.1| response regulator receiver domain-containing protein [Anaerostipes sp. 3_2_56FAA] Length = 245 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 46/231 (19%), Positives = 88/231 (38%), Gaps = 13/231 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +G + + + D+ + ++ G L Sbjct: 16 ILVVDDDKEIVGAIKKRLELEGYDVVPAYNGLEALDVLVEQ--DIQLLIIDIMMPGMDGL 73 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 IR +P+I +S + G DD V+KP E++ARV + RR Sbjct: 74 SATMKIRESKNIPIIILSAKTEESDKILGLSMGADDYVSKPFRPDELIARVKSQLRRYLQ 133 Query: 122 SNNRAETGPIRV---------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 ++A + DG+ V GE + E +IL LM + G+ + + Sbjct: 134 LGSKAAGPEDKNRLILGGLTLDLDGKCIYVDGEPVKVTATEFKILNLLMRHPGRVFSAEE 193 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 I+ ++ A EN V HI ++R+K+ + + +GY ++ Sbjct: 194 IYERVWEEAAYA-TENTVMVHIRRIREKIEIDPKNPKYLKVVWGIGYKMEK 243 >gi|306818188|ref|ZP_07451919.1| response regulator [Mobiluncus mulieris ATCC 35239] gi|304649152|gb|EFM46446.1| response regulator [Mobiluncus mulieris ATCC 35239] Length = 229 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 53/228 (23%), Positives = 93/228 (40%), Gaps = 14/228 (6%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 M ++D ++D + G G G + + R ++ ++ L G Sbjct: 1 MIYFVEDDRNIRDLVVYTLGSTGFEALGCEDDKAFRAEMAKTRPELVLLDIML--PGTDG 58 Query: 61 LELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 +++ R ++A +P+I ++ + + D G DD V KP E+++RV A+ R Sbjct: 59 IQILRRLKADRSTADIPIIMVTARGAEFEKVKSLDLGADDYVTKPFGMMELVSRVRAVLR 118 Query: 118 RLKVSNNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 R S + I V GE L +E ++LE LM G ++ Sbjct: 119 RSSRSAQDSVEEEILTLGSISLNLSRHAVMVNGETVTLTLKEYQLLEELMTQPGFIFSRD 178 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 Q+ +I+G + E V+ HI LRKKL + + R +GY Sbjct: 179 QLLDSIWG-YSFHGETRTVDVHIRTLRKKLGE--AAKYIKTVRGVGYK 223 >gi|297565188|ref|YP_003684160.1| winged helix family two component transcriptional regulator [Meiothermus silvanus DSM 9946] gi|296849637|gb|ADH62652.1| two component transcriptional regulator, winged helix family [Meiothermus silvanus DSM 9946] Length = 223 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 51/222 (22%), Positives = 92/222 (41%), Gaps = 8/222 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + +G E L A+ D+ ++ L L Sbjct: 5 ILIVEDEIRLAEILEDYLRREGYKTERAKDGGRALELWRVAQPDLILLDLML--PVLDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 E+ R IRA S VP+I ++ L G DD V KP RE++ARV R Sbjct: 63 EVARRIRAESDVPIIMLTARDDEVDKLVGLGLGADDYVVKPYSPREVVARVKAVLRRVRG 122 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++ G + V + GE L E ++L L G+ ++++ +A Sbjct: 123 AVLTQEVYRAGSLEVDLGAFEARCGGEPINLTPSELKLLALLAKEPGRVRQRSELLTA-S 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G + +E V++HI +R+KL + +++ R +GY + Sbjct: 182 GDAESYADERTVDAHIKNIRRKLGECG--ERIETVRGVGYKL 221 >gi|260888709|ref|ZP_05899972.1| DNA-binding response regulator YycF [Selenomonas sputigena ATCC 35185] gi|330839889|ref|YP_004414469.1| two component transcriptional regulator, winged helix family [Selenomonas sputigena ATCC 35185] gi|260861578|gb|EEX76078.1| DNA-binding response regulator YycF [Selenomonas sputigena ATCC 35185] gi|329747653|gb|AEC01010.1| two component transcriptional regulator, winged helix family [Selenomonas sputigena ATCC 35185] Length = 254 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 50/225 (22%), Positives = 101/225 (44%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G E + + D+ ++ L L Sbjct: 31 IMIVEDERRIARFLQMELEHEGFETESEENGRRAYERIVQEQYDLVLLDIML--PDMDGL 88 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R S VP+I ++ ++ ++ D G DD + KP +E+LARV A R K Sbjct: 89 EVCRRVREISDVPIIMLTAKDDVEDKVNGLDIGADDYITKPFAIQELLARVRAAIRVHKA 148 Query: 122 SNNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + ++ + V+G++ L ++E +LEY++ N+ + + QI Sbjct: 149 NEAGNRDERVLAVKDLVLYPGRYEVRVKGDLVELTKKEYSLLEYMLRNKPNVLTRDQILQ 208 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G +D + NVV+ +I LR K+ + + + R +GY+I Sbjct: 209 EVWG-YDYVGDTNVVDVYIRYLRAKIDERFDDKYIYTVRGVGYAI 252 >gi|256545415|ref|ZP_05472777.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Anaerococcus vaginalis ATCC 51170] gi|256398811|gb|EEU12426.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Anaerococcus vaginalis ATCC 51170] Length = 237 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 41/225 (18%), Positives = 90/225 (40%), Gaps = 10/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + + +G ++ + + + D+ ++ + Sbjct: 6 ILIIEDEQGISKIIKSYLEKEGYNVFQAFDGKEGLDFFENEQIDLILLDLMI--PKISGE 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 +L + IR S VP+I ++ S + ++ G DD V KP +E++ R+ + RR++ Sbjct: 64 DLIKEIRNKSNVPVIMVTAKVSEENIINGLKLGADDYVTKPFSPKELMQRIKTVLRRIEK 123 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFP------LPRRERRILEYLMANRGKRVAKTQIFS 175 N F L + E +I++ L +N K + +I Sbjct: 124 YNIPRADIIKTTDGRLEMDLEYNRFFKDGEEIFLTKNEFQIIKTLFSNPNKIFTREEIIE 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYS 219 +G FD + +++HI +R+K+ + D + + +GY Sbjct: 184 ITFG-FDYDAYDRAIDTHIKNIRQKIEDNPKKPDYIKTIYGMGYK 227 >gi|229593403|ref|YP_002875522.1| phosphate regulon two-component system response regulator [Pseudomonas fluorescens SBW25] gi|312963904|ref|ZP_07778375.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas fluorescens WH6] gi|229365269|emb|CAY53596.1| phosphate regulon two-component system, response regulator [Pseudomonas fluorescens SBW25] gi|311281939|gb|EFQ60549.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas fluorescens WH6] Length = 229 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 45/224 (20%), Positives = 92/224 (41%), Gaps = 9/224 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A +++ G + + + + D+ ++ L G + Sbjct: 6 ILIVDDEAPIREMIAVALEMAGYDCLEAENSQQAHAIIVDRKPDLILLDWML--PGTSGI 63 Query: 62 ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IY 116 EL R ++ +P+I ++ + + G DD + KP RE++AR+ A Sbjct: 64 ELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 E G + + + G+ + E R+L++ M ++ + + Q+ Sbjct: 124 AGPTDGEAPIEVGGLLLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAYTRGQLLDQ 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + VEE V+ HI +LRK L + + V + R GY Sbjct: 184 VWG-GNVYVEERTVDVHIRRLRKALGDAYE-NLVQTVRGTGYRF 225 >gi|167746354|ref|ZP_02418481.1| hypothetical protein ANACAC_01063 [Anaerostipes caccae DSM 14662] gi|167654347|gb|EDR98476.1| hypothetical protein ANACAC_01063 [Anaerostipes caccae DSM 14662] Length = 245 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 46/231 (19%), Positives = 87/231 (37%), Gaps = 13/231 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +G + + + D+ + ++ G L Sbjct: 16 ILVVDDDKEIVGAIKKRLELEGYDVVPAYNGLEALDVLVEQ--DIQLLIIDIMMPGMDGL 73 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 IR +P+I +S + G DD V+KP E++ARV + RR Sbjct: 74 SATMKIRESKNIPIIILSAKTEESDKILGLSMGADDYVSKPFRPDELIARVKSQLRRYLQ 133 Query: 122 SNNRAETGPIRV---------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 ++A DG+ V GE + E +IL LM + G+ + + Sbjct: 134 LGSKAAGPEDNNRLILGGLTLDLDGKCIYVDGEPVKVTATEFKILNLLMRHPGRVFSAEE 193 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 I+ ++ A EN V HI ++R+K+ + + +GY ++ Sbjct: 194 IYERVWEEAAYA-TENTVMVHIRRIREKIEIDPKNPKYLKVVWGIGYKMEK 243 >gi|110833027|ref|YP_691886.1| phosphate regulon transcriptional regulatory protein phoB [Alcanivorax borkumensis SK2] gi|110646138|emb|CAL15614.1| Phosphate regulon transcriptional regulatory protein phoB [Alcanivorax borkumensis SK2] Length = 234 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 39/222 (17%), Positives = 88/222 (39%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 +++DD +++ + + + + R D+ ++ L G ++ Sbjct: 6 ILIVDDEPAIREMVAVALELADFDVLEAENAQRGHEIIVDERPDLVLLDWMLPSVTGIEL 65 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118 + ++VP+I ++ + D G DD + KP RE+++R+ A Sbjct: 66 ARRLKRDETTNEVPIIMLTAKSEEDNKIQGLDVGADDYITKPFSTRELISRIKAVLRRAS 125 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + E + + + E R+LE+ M+++ + ++TQ+ ++ Sbjct: 126 SVAAEKAIEVEGLCLDPVSHRISANDSPVDMGPTEYRLLEFFMSHQERAYSRTQLLDQVW 185 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G + VE+ ++ HI +LRK L + + R GY Sbjct: 186 GA-NVYVEDRTIDVHIRRLRKALAPFGYDRFIQTVRGTGYRF 226 >gi|86739024|ref|YP_479424.1| two component transcriptional regulator [Frankia sp. CcI3] gi|86565886|gb|ABD09695.1| two component transcriptional regulator, winged helix family [Frankia sp. CcI3] Length = 239 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 46/227 (20%), Positives = 87/227 (38%), Gaps = 13/227 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + D G + + L +AR D+ ++ L E Sbjct: 8 LVVDDEPNIVDLLRMALRFHGFDVLTATTGRAALELAVAARPDLMILDVML--PDIDGFE 65 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARVA 113 + R +RA P++ +S + + + G DD V KP E + Sbjct: 66 ICRRLRADGHPVPVVYLSARNAHRDKIAGLTYGGDDYVTKPFAVDELLARVRAVLRRTSP 125 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + + D GE L E +L Y + N + +++TQI Sbjct: 126 PPAEPAPAPPSPLRFADVELDPDAHLVRRAGEPIDLSPTEFSLLRYFLTNPNRVLSRTQI 185 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 A++ +D E +V+ ++S LR+KL + G + ++R GY + Sbjct: 186 LDAVWS-YDYGGESTIVDQYVSYLRRKLG-RHGPSLIHTQRGFGYVL 230 >gi|318040455|ref|ZP_07972411.1| two-component system response regulator [Synechococcus sp. CB0101] Length = 239 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 43/226 (19%), Positives = 96/226 (42%), Gaps = 11/226 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L DD A ++ ++G ++ D+ ++ L +E Sbjct: 7 LLADDDARLRQFLELELREEGYAVHSCGDGIGALTQIRQEPPDLLVLDWML--PDLSGVE 64 Query: 63 LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 + + +R+ QVP++ ++ +++ ++ D+G DD + KP E+LAR+ A+ RR Sbjct: 65 VCQRLRSTGVQVPVLMLTGRDAVKDRVEALDAGADDYLVKPFSIEELLARLRALARRGAS 124 Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + E +++ + G L E ++L LMA G+ + + Sbjct: 125 ASGPASEQTDLLELEDLQLNLASHEVSRAGTSVHLSATEFQLLRCLMAEPGRVQPRQNLL 184 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + + NV++ ++ LR+KL + + R +G+ + Sbjct: 185 DQVWGT-NFVGDANVLDVYVRYLRRKLEPPGRPTLIQTVRGVGFLL 229 >gi|310640765|ref|YP_003945523.1| response regulators consisting of a chey-like receiver domain protein and a winged-helix DNA-binding domain protein [Paenibacillus polymyxa SC2] gi|309245715|gb|ADO55282.1| Response regulators consisting of a CheY-like receiver domain protein and a winged-helix DNA-binding domain protein [Paenibacillus polymyxa SC2] Length = 235 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 49/232 (21%), Positives = 87/232 (37%), Gaps = 15/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D + + + +G +L + E D+ ++ + Sbjct: 5 ILLIEDDLSIAEMLLKALTKEGYNLTTASDGEEGLNAFERHTYDLVLVDLM--MPKVDGM 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR S VP++ +S S G DD V KP E+ AR+ + RR Sbjct: 63 EVIRQIRTRSAVPILIMSAKDSDVDKALGLGFGADDYVAKPFSMLEMTARIQSAIRRSTT 122 Query: 122 SNNRAETGPI-----------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + R+ D G L +E IL+ +N + K Sbjct: 123 YARLQQQEEQPQAQVLTYGNLRIDFDHFTVIRDGNEIQLTAKESDILKLFASNPNRVFTK 182 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221 Q++ I+ D +ENV+ HI +LR+K+ + + + +GY + Sbjct: 183 AQLYGFIW-KDDYMGDENVINVHIRRLREKIEEDPSHPVHIKTLWGIGYKWE 233 >gi|307277355|ref|ZP_07558453.1| putative regulatory protein VanR [Enterococcus faecalis TX2134] gi|306505989|gb|EFM75161.1| putative regulatory protein VanR [Enterococcus faecalis TX2134] Length = 229 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 43/227 (18%), Positives = 90/227 (39%), Gaps = 9/227 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD + + ++G + + D+ + ++ + Sbjct: 3 ILVADDDKEIVELLSIYIHNEGYEVVKAYDGKEALSKL-HTTPDIDLLILDIMMPIMDGM 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + +R SQ+P+I ++ + + +G DD V KP + E++ARV +I RR ++ Sbjct: 62 EVVKELRKESQIPIIMLTAKTTDMDKIKGLVAGADDYVTKPFNPLEVMARVKSILRRSQM 121 Query: 122 SNNRAETGP------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + E + ++ + L E IL L ++ + + +IF Sbjct: 122 QLTKEEPDELEVGPLMINKDSHEVKTIERKEIQLTALEFGILYLLASHPNRVFSADEIFE 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221 ++ + V V H+S LR K+ G + + +GY ID Sbjct: 182 RVW-QQESIVSAKTVMVHVSHLRDKIEEATGGEKVIQTVWGVGYKID 227 >gi|228961087|ref|ZP_04122714.1| Two-component response regulator [Bacillus thuringiensis serovar pakistani str. T13001] gi|228798632|gb|EEM45618.1| Two-component response regulator [Bacillus thuringiensis serovar pakistani str. T13001] Length = 229 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 50/230 (21%), Positives = 90/230 (39%), Gaps = 12/230 (5%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + ++++D ++++ F + + + + D+ ++ L Sbjct: 4 IILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIML--PELDG 61 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR-------EILARVA 113 + R IR S+VP+I ++ TL F+ G DD V KP +L Sbjct: 62 WSVCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRK 121 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + L+ ++ I V R V L E IL Y + N+G + + Q+ Sbjct: 122 VTKQLLENEDDILSIHGIHVHFPSRTVTVDRTDINLTHTEFEILAYFIKNQGIVLTREQL 181 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 S I+G ++ A ++ V SHI LR KL K + + GY + N Sbjct: 182 ISRIWG-YEFAGDDRTVNSHIRNLRNKLGEK--AKYITTVVRTGYKFEGN 228 >gi|115376427|ref|ZP_01463663.1| transcriptional regulatory protein CpxR [Stigmatella aurantiaca DW4/3-1] gi|310823253|ref|YP_003955611.1| DNA-binding response regulator [Stigmatella aurantiaca DW4/3-1] gi|115366559|gb|EAU65558.1| transcriptional regulatory protein CpxR [Stigmatella aurantiaca DW4/3-1] gi|309396325|gb|ADO73784.1| DNA-binding response regulator [Stigmatella aurantiaca DW4/3-1] Length = 226 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 48/220 (21%), Positives = 85/220 (38%), Gaps = 6/220 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +LIDD + + G +G+S+ + D ++ G LE Sbjct: 6 LLIDDDTRMYELLAQYLGQNGISVAHAPDGGRGLAALEGSPYDAVLLDVM--MPGMDGLE 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDV--VNKPIHHREILARVAAIYRRLK 120 + + IRA +QVP++ ++ + + G DD R + Sbjct: 64 VCKRIRAKTQVPILMLTARGDETDRVVGLELGADDYLAKPFSPRELLARLRAVLRRAQPT 123 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 +R E + + GR+ +V G L E +L L+ G+ + + + G Sbjct: 124 AVADRMEAQGVSIDVAGREVKVNGRPVELTGLEFELLVALVRRAGRVIPRDALLGEA-GR 182 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D V E V+ HIS LR+KL ++ G + + R +GY Sbjct: 183 SDTVVGERTVDVHISHLRQKLGDEGG-RLIKTVRGVGYVF 221 >gi|111025331|ref|YP_707751.1| response regulator, two-component system [Rhodococcus jostii RHA1] gi|110824310|gb|ABG99593.1| response regulator, two-component system [Rhodococcus jostii RHA1] Length = 230 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 51/220 (23%), Positives = 91/220 (41%), Gaps = 5/220 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D A + +G + + E W + DV ++ L G E Sbjct: 4 LVVEDEARLASVVRRGLELEGFVVVTAATGEDGLWRATEDTFDVIVLDIML--PGMNGYE 61 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R +RA P++ ++ D FD G DD + KP ++AR+ A+ RR Sbjct: 62 IVRALRAKQIWTPILMLTAKDGEYDQADAFDLGADDYLVKPFSFVVLVARLRALVRRGAP 121 Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + T + R E L RE +LE+L+ + + K I ++ Sbjct: 122 ARPVLLTAGDLSLDPARRRVMRGNEELALTPREFGVLEFLLRHPDTALTKGVILRNVWDA 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +EN+VE +I LR+K+ G +D+ R +GY + Sbjct: 182 H-YDGDENIVEVYIGYLRRKIDAPFGAHTIDTVRGVGYRL 220 >gi|150389689|ref|YP_001319738.1| two component transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149949551|gb|ABR48079.1| two component transcriptional regulator, winged helix family [Alkaliphilus metalliredigens QYMF] Length = 224 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 50/223 (22%), Positives = 93/223 (41%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++++ + ++G + E L S D+ ++ L Sbjct: 4 ILVVEDEDILREVIMDYLIEEGYQVLEAADGEQALELFQSHSVDLVILDIVL--PKIDGW 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 + R IR +S +P+I ++ +L ++ G DD + KP R ++ +V + Sbjct: 62 SVCRRIRKNSNIPIIMLTARSDEDDSLLGYELGADDYLIKPYSPRVLMVKVKRFLEKYSG 121 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + I + R V G L E +L YLM NRG + + Q+ + I+G Sbjct: 122 NMDEMLTSASGIVINMGARLVSVDGNTISLTHTEFEMLAYLMQNRGIVINREQLIAKIWG 181 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D +E V SHI LR KL +K + + GY + Sbjct: 182 -YDFYGDEKTVNSHIRNLRAKLGSKGS--CIVTVIRSGYKFEE 221 >gi|150388491|ref|YP_001318540.1| two component transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149948353|gb|ABR46881.1| two component transcriptional regulator, winged helix family [Alkaliphilus metalliredigens QYMF] Length = 229 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 39/227 (17%), Positives = 86/227 (37%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + + ++ + + D+ ++ L G+ Sbjct: 4 ILILEDDISIAELQRDYLEINQFDVDIEARGDEGLQRALNHDYDLIILDIML--PGKDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IR P++ +S + G DD + KP E++ARV A R + Sbjct: 62 EICKEIRLTKNTPILLVSAKKEDIDKVRGLGLGADDYMTKPFSPNELVARVRAHIARFER 121 Query: 122 SNNRAETGPIRVF-------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + + R V + L +E +L L N + K ++F Sbjct: 122 LTSNEDIHKGLIQVGEISIEQLSRSVFVNQKETNLTTKEFDLLYLLAQNPQRVFRKEELF 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 I+G +D + + V HI ++R+K+ + +++ +GY Sbjct: 182 ETIWG-WDSFGDISTVTVHIRRIREKIERDPSNPKYIETIWGVGYKF 227 >gi|302671203|ref|YP_003831163.1| two component system response regulator [Butyrivibrio proteoclasticus B316] gi|302395676|gb|ADL34581.1| two component system response regulator [Butyrivibrio proteoclasticus B316] Length = 230 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 46/229 (20%), Positives = 92/229 (40%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD ++ ++G ++ + + + + ++ Sbjct: 5 ILIADDETEIRSLLKLYLENEGYAVAEAGDGQEALKILAGGDISLCLLDVM--MPEMDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + +R ++ +P+I IS + + D G DD + KP + E +ARV + RR Sbjct: 63 HVLKEMRKNNNIPVIIISARDTDPDKILGLDLGADDYMIKPFNPLEAVARVRSNLRRFHA 122 Query: 122 SNNRAETGPIRV--------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + ++ ++ QGE L E +++E M N GK K +I Sbjct: 123 LKGDLQPQTGKIIELLDLKLDTEACILYRQGEKIELTSNELKMMELFMENPGKVFTKEKI 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + ++G V +N + ISKLR KL + + + R LGY ++ Sbjct: 183 YEYVWGDT-YVVADNNIMVAISKLRSKLCDDPSA-YIRTVRGLGYRMEK 229 >gi|242240125|ref|YP_002988306.1| DNA-binding transcriptional regulator BaeR [Dickeya dadantii Ech703] gi|242132182|gb|ACS86484.1| two component transcriptional regulator, winged helix family [Dickeya dadantii Ech703] Length = 243 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 45/223 (20%), Positives = 82/223 (36%), Gaps = 7/223 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + + G + E + + ++ L G L Sbjct: 17 LIVEDEPKLGQLLVDYLQASGYATHWLTQGNDVEPWVRAHPCRLVLLDLML--PGRDGLS 74 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L + IR S VP+I ++ L + G DD + KP RE++ARV + RR Sbjct: 75 LCQAIRGFSNVPIIMVTARTEEIDRLLGLEIGADDYICKPYSPREVVARVKTLLRRCHWQ 134 Query: 123 NNRAETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + G L E R+L L A + ++ Q+ +Y Sbjct: 135 SEPTAVTDRPALLIDQYRYQASYLGRNLDLTPAEFRLLRILSAEPNRVFSREQLLDNLYD 194 Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + V + ++SHI LR+KL + + +GY + Sbjct: 195 DY-RVVTDRTIDSHIKNLRRKLEQFDQETSFIRTVYGIGYRWE 236 >gi|118443679|ref|YP_877073.1| transcriptional regulator [Clostridium novyi NT] gi|118134135|gb|ABK61179.1| transcriptional regulatory protein [Clostridium novyi NT] Length = 232 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 55/230 (23%), Positives = 91/230 (39%), Gaps = 12/230 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++ DD + + DG + + + ++ D++ I+ Sbjct: 5 LIADDEEEIIELLSLYLEKDGHCIYSAVNGLEALQIINNNEVDIAIIDIM--MPQIDGYH 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R IR + +P+I +S + D G DD + KP + E+LARV A RR S Sbjct: 63 LVRKIRENYDMPVIMLSAKSEYCDKILGLDLGADDYITKPFNAMEVLARVKAQLRRYNKS 122 Query: 123 NNRAETGPIRVFSD--------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + E + + L E +IL YL+ N+GK K QIF Sbjct: 123 MSEKEKCEKQYLECGKLRLNINTCTLYKENIEVYLTSTEYKILFYLLENKGKVFTKKQIF 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223 ++ ++N + HIS LR K+ + + + R LGY +D N Sbjct: 183 EYVWEEP-FYGDDNAIMVHISNLRDKIEDDSKNPHYIKTIRGLGYKLDSN 231 >gi|225573118|ref|ZP_03781873.1| hypothetical protein RUMHYD_01309 [Blautia hydrogenotrophica DSM 10507] gi|225039522|gb|EEG49768.1| hypothetical protein RUMHYD_01309 [Blautia hydrogenotrophica DSM 10507] Length = 230 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 32/222 (14%), Positives = 85/222 (38%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + DG + + D+ ++ L Sbjct: 4 ILIVEDDSFLNKMLDYNLTADGYGVTSALNARTAAEAIRQREFDLVLLDINL--PDGNGF 61 Query: 62 ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH---REILARVAAIYR 117 EL ++I H +I ++ + ++ G D + KP + + + A+ Sbjct: 62 ELCKLIKPQHPDTIVIFLTANDQESDQIRGYEVGAVDYITKPFVIGALQRKIKAMFAMLE 121 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 K + + + G + + + + G+ L E ++L N + + + Q+ + Sbjct: 122 HHKPAKDIYDDGRLFLDFSEQTASLNGKPLTLSPMEYKMLNLFRKNPRQVLTRGQLLEKL 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 + + + V+E+ + + IS++R K+ + G + + +GY Sbjct: 182 WDIDERFVDEHTLTTSISRIRSKIESDGGAPYIKTVYGMGYQ 223 >gi|168185395|ref|ZP_02620030.1| transcriptional regulatory protein ResD [Clostridium botulinum C str. Eklund] gi|169296276|gb|EDS78409.1| transcriptional regulatory protein ResD [Clostridium botulinum C str. Eklund] Length = 222 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 40/225 (17%), Positives = 91/225 (40%), Gaps = 8/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D ++ F S+ + D+ ++ + Sbjct: 3 ILIIEDEERMRKLLRDYFNRSEFSVLEAEDGVKALKVFKENSVDIVILDIMI--PYLDGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 + + IR +S+VP+I ++ + L ++ G DD V KP + ++A+V Sbjct: 61 TVCKSIRQNSKVPIIMLTAKGEEEDKLLGYELGADDYVTKPFSPKVLVAKVKALLKRSVV 120 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + N + + + ++ G++ L +E +L + N +++ I ++ Sbjct: 121 EQKETNIKNYNGLEINKLSNEVKIDGDIVNLSPKEYDLLIFFANNIDIVLSRDIILDKVW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 G FD V++H+ +LR+KL+ K + + R GY + + Sbjct: 181 G-FDYEGGLRTVDTHVKRLREKLKEK--AKFIVTVRGKGYKFEVD 222 >gi|150388543|ref|YP_001318592.1| two component transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149948405|gb|ABR46933.1| two component transcriptional regulator, winged helix family [Alkaliphilus metalliredigens QYMF] Length = 240 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 48/222 (21%), Positives = 90/222 (40%), Gaps = 8/222 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++IDD L+ G F +G + E + S D ++ L + Sbjct: 20 LIIDDEKLLVKGLRKSFEQEGFDVSVAYDGEEALRVFESGSFDFIILDLML--PKIDGIT 77 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRRL 119 L IR S V +I ++ + + G DD + KP + RE + + + Sbjct: 78 LCNRIRQQSDVFIIMLTAKDGDIDKILGLELGADDYMTKPFNTRELIARMRTLIRRQEKG 137 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +V + + + V R EV L +E IL L+ N+G+ + +IF ++G Sbjct: 138 EVKKDEYQFRDLMVDIGSRTVNRGEEVINLTPKEFDILVLLIRNKGRVFGREEIFQLVWG 197 Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + ++ H+ LR+KL++ K +++K +GY Sbjct: 198 EPCY--DTRTIDVHVKNLREKLKDIKTKGPMIETKWGVGYYF 237 >gi|310640985|ref|YP_003945743.1| two component transcriptional regulator, winged helix family [Paenibacillus polymyxa SC2] gi|309245935|gb|ADO55502.1| Two component transcriptional regulator, winged helix family [Paenibacillus polymyxa SC2] Length = 229 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 44/224 (19%), Positives = 91/224 (40%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD + +G + + +A D+ ++ Sbjct: 5 ILIIDDDEKIVSMLRRGLAFEGYEVLTATNGAEGLNKMLTAEPDLVVLDVM--MPQVDGF 62 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIY 116 E+ R +R S VP++ ++ ++ + D G DD + KP + A + Sbjct: 63 EVCRRMREGGSTVPVLMLTAKDEVENRVKGLDLGADDYLVKPFALEELLARVRALLRRKT 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + NR +++ ++ R+ G+ L +E +L M N + +++ I Sbjct: 123 EQQDNNGNRLTFEDLQLDNESREVVRGGKRLELTAKEFELLHLFMQNPKRVLSRDLIMDK 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I+G +D + E NV+E +I+ LR+K G + + R GY + Sbjct: 183 IWG-YDYSGESNVLEVYIAMLRQKTEQDGGKRLIRTIRGAGYIL 225 >gi|323341209|ref|ZP_08081456.1| response regulator [Lactobacillus ruminis ATCC 25644] gi|323091403|gb|EFZ34028.1| response regulator [Lactobacillus ruminis ATCC 25644] Length = 243 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 38/231 (16%), Positives = 79/231 (34%), Gaps = 14/231 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +++G L + + + L D+ ++ L Sbjct: 11 ILVVEDDSDIREGVRILLESEEYEVIEAENGVVGLKLLDET-IDLVILDIM--MPKLNGL 67 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILAR 111 ++ IR S VP++ ++ L G DD + KP + Sbjct: 68 KVCEEIRKTSNVPVLFLTAKSQESDKLLGLMVGGDDYLAKPFSYAELLGRVKALLRRYQV 127 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + E G I++ + + G + E +IL +M + GK + Sbjct: 128 YQGKSTNENEAEKIIEIGSIKLNTAFNEIVADGNKVEVSDLEYKILRLMMQHPGKIFSTQ 187 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 I+ +++ N V HI KLR K+ + + + GY + Sbjct: 188 NIYESVWREPYFYTCGNTVMVHIRKLRTKIEPDPQKPQYIKTVWGKGYRFE 238 >gi|227550019|ref|ZP_03980068.1| two component system response regulator [Corynebacterium lipophiloflavum DSM 44291] gi|227077928|gb|EEI15891.1| two component system response regulator [Corynebacterium lipophiloflavum DSM 44291] Length = 227 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 40/220 (18%), Positives = 89/220 (40%), Gaps = 5/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + + +G + + + D+ ++ L G + Sbjct: 5 ILVVEDDPAINEMLTIVLESEGFETQSVTDGAEAVPVFNDYDPDIVLLDLML--PGMNGV 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R IR S VP++ ++ + +SG DD + KP +E++AR+ A RR + Sbjct: 63 DICREIRKVSAVPIVMLTAKTDTVDVVLGLESGADDYITKPFKPKELIARIRARLRRTEE 122 Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 T + G L E +L + + A+ ++ +++G Sbjct: 123 EPAEVLTIGDLTIDVPQHMVTRDGAEIALTPLELDLLLEMARKPNQVHAREELLESVWGY 182 Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219 + A + +V H+ +LR K+ + + V + R +GY Sbjct: 183 RN-ASDTRLVNVHVQRLRSKIEHDPENPEIVLTVRGVGYK 221 >gi|225575707|ref|ZP_03784317.1| hypothetical protein RUMHYD_03800 [Blautia hydrogenotrophica DSM 10507] gi|225037087|gb|EEG47333.1| hypothetical protein RUMHYD_03800 [Blautia hydrogenotrophica DSM 10507] Length = 229 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 45/227 (19%), Positives = 85/227 (37%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + D G +E + + D+ ++ L Sbjct: 4 ILIVEDEEAIADLERDYLEISGFEVEIAHRGDIGLKRAMEEDFDLIILDLML--PEVDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 ++ R +R P+I +S + G DD + KP E++ARV A R Sbjct: 62 DICRQVREIKNTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLDRYER 121 Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N+ E I++ R V GE +E +L +L N + K ++F Sbjct: 122 LVGSGMPKNDVVEIRGIKIDKTARRVWVNGEETTFTTKEFDLLTFLAENPNRVFTKEELF 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 I+ + + + V HI K+R+K+ N +++ +GY Sbjct: 182 REIWDM-ESVGDIATVTVHIKKIREKIEFNTAKPQYIETIWGVGYRF 227 >gi|218899996|ref|YP_002448407.1| regulatory protein VanR [Bacillus cereus G9842] gi|218544954|gb|ACK97348.1| regulatory protein VanR [Bacillus cereus G9842] Length = 233 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 43/230 (18%), Positives = 89/230 (38%), Gaps = 11/230 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ ++G + E + + ++ + Sbjct: 6 ILIVDDEKEIRKLITIYLKNEGYEVLQAGDGEEGLEIVKKRDVHLIVLDIM--MPKIDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-------AA 114 + +R +++P+I +S + +G DD V KP + E++AR+ Sbjct: 64 HMCMKVREIAEMPIIMLSAKTQDMDKILGLTTGADDYVAKPFNPLELIARIKSQLRRYMK 123 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + N E G ++V R + E L RE +LE L+ N+G + QI+ Sbjct: 124 MSGTSVQDENEIEIGDMKVNIVTRQVIIANEEVKLTPREFEVLELLVRNQGMVLNAAQIY 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223 ++ +N V HI K+R+K+ + + +GY I+ + Sbjct: 184 ERVWKEQAFQ-SDNTVMVHIRKIREKIEAIPRKPRYIKTVWGVGYKIEKD 232 >gi|154503273|ref|ZP_02040333.1| hypothetical protein RUMGNA_01097 [Ruminococcus gnavus ATCC 29149] gi|153796267|gb|EDN78687.1| hypothetical protein RUMGNA_01097 [Ruminococcus gnavus ATCC 29149] Length = 226 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 51/225 (22%), Positives = 93/225 (41%), Gaps = 10/225 (4%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 M ++D +++ I G+ +GF + ++ ++ L GE Sbjct: 1 MIYCVEDDDNIRELVIYTLETTGLKAKGFAEGTAFMEALAFDTPELILLDIML--PGEDG 58 Query: 61 LELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAI 115 LEL + ++ +P+I ++ + + DSG DD V KP E+ + Sbjct: 59 LELLKKLKNSAKTKDIPVIMVTAKGAEYDKVIGLDSGADDYVTKPFGMMELVSRIKAVLR 118 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + V + +V GE+ L +E +LE LM N+ + + Q+ Sbjct: 119 RSGRVQEQDMLSVNGVSVDVKKHEVKVAGEIVTLTLKEFELLERLMRNQNIVLTRDQLLE 178 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I+G +D E V+ H+ LR+KL K D + + R +GY I Sbjct: 179 DIWG-YDFDGETRTVDVHVRTLRQKLGEKG--DIIKTVRGVGYRI 220 >gi|228901720|ref|ZP_04065892.1| Two-component response regulator [Bacillus thuringiensis IBL 4222] gi|228857852|gb|EEN02340.1| Two-component response regulator [Bacillus thuringiensis IBL 4222] Length = 228 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 51/227 (22%), Positives = 93/227 (40%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ ++G+ + L D+ ++ + Sbjct: 5 ILIVDDDKEIRNLISVYLENEGLKTQKAEDAIQALQLLEEKEFDLVILDIM--MPNMDGI 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E IR +P+I +S + SG DD ++KP + E++ARV + RR K Sbjct: 63 EACMKIREDRNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 122 Query: 122 SNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N E V +D R V+G+ L +E ILE L N+G ++ +I+ Sbjct: 123 YNTSVEHNKSILEIGDLTVNTDTRQVWVRGKETRLTPKEFAILELLARNKGIVLSVAKIY 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220 A++ +N V HI+K+R K+ + + +GY I Sbjct: 183 EAVWKEV-FYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGYKI 228 >gi|71282474|ref|YP_267951.1| phosphate regulon response regulator PhoB [Colwellia psychrerythraea 34H] gi|71148214|gb|AAZ28687.1| phosphate regulon response regulator PhoB [Colwellia psychrerythraea 34H] Length = 233 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 44/224 (19%), Positives = 98/224 (43%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D +++ + +G + +E D+ ++ L G + Sbjct: 5 ILVVEDETPIREMISFVLDQNGFNAIEACDIEQALAKIHEPYPDLILLDWML--PGGTGV 62 Query: 62 ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 L + ++ + +P+I ++ + F++GVDD V KP +E++AR+ A+ RR Sbjct: 63 SLAKKLKQNEYTRNIPIIMLTARSDEDDKVKGFEAGVDDFVTKPFSPKELIARIKAVIRR 122 Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + + +++ + G L E R+L + M + + ++ Q+ Sbjct: 123 VSPTSLEEEVDFHGLKLDPVAHRVAINGNSLDLGPTEFRLLHFFMTHTERVYSREQLLDN 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + VE+ V+ HI +LRK + + D V + R GY Sbjct: 183 VWGT-NIYVEDRTVDVHIRRLRKAISGEGHEDFVQTVRGAGYRF 225 >gi|23502991|ref|NP_699118.1| phosphate regulon transcriptional regulatory protein Phob [Brucella suis 1330] gi|62290982|ref|YP_222775.1| phosphate regulon transcriptional regulatory protein Phob [Brucella abortus bv. 1 str. 9-941] gi|82700892|ref|YP_415466.1| response regulator receiver [Brucella melitensis biovar Abortus 2308] gi|161620053|ref|YP_001593940.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella canis ATCC 23365] gi|163844158|ref|YP_001628563.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella suis ATCC 23445] gi|189025195|ref|YP_001935963.1| transcriptional regulator [Brucella abortus S19] gi|254690277|ref|ZP_05153531.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella abortus bv. 6 str. 870] gi|254696392|ref|ZP_05158220.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella abortus bv. 2 str. 86/8/59] gi|254700774|ref|ZP_05162602.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella suis bv. 5 str. 513] gi|254705144|ref|ZP_05166972.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella suis bv. 3 str. 686] gi|254707339|ref|ZP_05169167.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella pinnipedialis M163/99/10] gi|254709119|ref|ZP_05170930.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella pinnipedialis B2/94] gi|254713455|ref|ZP_05175266.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella ceti M644/93/1] gi|254716189|ref|ZP_05178000.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella ceti M13/05/1] gi|254731306|ref|ZP_05189884.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella abortus bv. 4 str. 292] gi|256030645|ref|ZP_05444259.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella pinnipedialis M292/94/1] gi|256045749|ref|ZP_05448627.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella melitensis bv. 1 str. Rev.1] gi|256060106|ref|ZP_05450288.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella neotomae 5K33] gi|256112468|ref|ZP_05453389.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella melitensis bv. 3 str. Ether] gi|256258530|ref|ZP_05464066.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella abortus bv. 9 str. C68] gi|260546246|ref|ZP_05821986.1| transcriptional regulatory protein [Brucella abortus NCTC 8038] gi|260563045|ref|ZP_05833531.1| transcriptional regulatory protein [Brucella melitensis bv. 1 str. 16M] gi|260567387|ref|ZP_05837857.1| transcriptional regulatory protein [Brucella suis bv. 4 str. 40] gi|260755816|ref|ZP_05868164.1| two component transcriptional regulator [Brucella abortus bv. 6 str. 870] gi|260759039|ref|ZP_05871387.1| two component transcriptional regulator [Brucella abortus bv. 4 str. 292] gi|260760764|ref|ZP_05873107.1| two component transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59] gi|260884841|ref|ZP_05896455.1| two component transcriptional regulator [Brucella abortus bv. 9 str. C68] gi|261217962|ref|ZP_05932243.1| two component transcriptional regulator [Brucella ceti M13/05/1] gi|261314822|ref|ZP_05954019.1| two component transcriptional regulator [Brucella pinnipedialis M163/99/10] gi|261316619|ref|ZP_05955816.1| two component transcriptional regulator [Brucella pinnipedialis B2/94] gi|261321188|ref|ZP_05960385.1| two component transcriptional regulator [Brucella ceti M644/93/1] gi|261324082|ref|ZP_05963279.1| two component transcriptional regulator [Brucella neotomae 5K33] gi|261751283|ref|ZP_05994992.1| two component transcriptional regulator [Brucella suis bv. 5 str. 513] gi|261755848|ref|ZP_05999557.1| two component transcriptional regulator [Brucella suis bv. 3 str. 686] gi|265987691|ref|ZP_06100248.1| two component transcriptional regulator [Brucella pinnipedialis M292/94/1] gi|265992165|ref|ZP_06104722.1| two component transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1] gi|265993903|ref|ZP_06106460.1| two component transcriptional regulator [Brucella melitensis bv. 3 str. Ether] gi|294851371|ref|ZP_06792044.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella sp. NVSL 07-0026] gi|297247369|ref|ZP_06931087.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella abortus bv. 5 str. B3196] gi|23349030|gb|AAN31033.1| phosphate regulon transcriptional regulatory protein Phob [Brucella suis 1330] gi|62197114|gb|AAX75414.1| PhoB, phosphate regulon transcriptional regulatory protein Phob [Brucella abortus bv. 1 str. 9-941] gi|82616993|emb|CAJ12102.1| Response regulator receiver:Transcriptional regulatory protein, C terminal [Brucella melitensis biovar Abortus 2308] gi|161336864|gb|ABX63169.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella canis ATCC 23365] gi|163674881|gb|ABY38992.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella suis ATCC 23445] gi|189020767|gb|ACD73489.1| Transcriptional regulatory protein [Brucella abortus S19] gi|260096353|gb|EEW80229.1| transcriptional regulatory protein [Brucella abortus NCTC 8038] gi|260153061|gb|EEW88153.1| transcriptional regulatory protein [Brucella melitensis bv. 1 str. 16M] gi|260156905|gb|EEW91985.1| transcriptional regulatory protein [Brucella suis bv. 4 str. 40] gi|260669357|gb|EEX56297.1| two component transcriptional regulator [Brucella abortus bv. 4 str. 292] gi|260671196|gb|EEX58017.1| two component transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59] gi|260675924|gb|EEX62745.1| two component transcriptional regulator [Brucella abortus bv. 6 str. 870] gi|260874369|gb|EEX81438.1| two component transcriptional regulator [Brucella abortus bv. 9 str. C68] gi|260923051|gb|EEX89619.1| two component transcriptional regulator [Brucella ceti M13/05/1] gi|261293878|gb|EEX97374.1| two component transcriptional regulator [Brucella ceti M644/93/1] gi|261295842|gb|EEX99338.1| two component transcriptional regulator [Brucella pinnipedialis B2/94] gi|261300062|gb|EEY03559.1| two component transcriptional regulator [Brucella neotomae 5K33] gi|261303848|gb|EEY07345.1| two component transcriptional regulator [Brucella pinnipedialis M163/99/10] gi|261741036|gb|EEY28962.1| two component transcriptional regulator [Brucella suis bv. 5 str. 513] gi|261745601|gb|EEY33527.1| two component transcriptional regulator [Brucella suis bv. 3 str. 686] gi|262764884|gb|EEZ10805.1| two component transcriptional regulator [Brucella melitensis bv. 3 str. Ether] gi|263003231|gb|EEZ15524.1| two component transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1] gi|264659888|gb|EEZ30149.1| two component transcriptional regulator [Brucella pinnipedialis M292/94/1] gi|294819960|gb|EFG36959.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella sp. NVSL 07-0026] gi|297174538|gb|EFH33885.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella abortus bv. 5 str. B3196] Length = 228 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 42/224 (18%), Positives = 88/224 (39%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++D + +G ++ + E + D+ ++ L G + Sbjct: 7 IAVVEDEEALSVLLRYNLEAEGYQVDTMLRGDEAEIALRESVPDLLILDWML--PGVSGI 64 Query: 62 ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIY 116 EL R +R + P+I ++ + G DD V KP E+ + Sbjct: 65 ELCRRLRQRPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKAMLRR 124 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + ++ + G + + + + L E R+LEY M + G+ +++Q+ Sbjct: 125 ANPSILSHVLKVGDLLLDRQQHRVYRKEKEVHLGPTEFRLLEYFMMSPGRVFSRSQLLDG 184 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G D V++ V+ H+ +LRK + D + + R GYS Sbjct: 185 VWG-PDIYVDDRTVDVHVGRLRKAINVGRAADSIRTVRGAGYSF 227 >gi|328948860|ref|YP_004366197.1| transcriptional regulator [Treponema succinifaciens DSM 2489] gi|328449184|gb|AEB14900.1| two component transcriptional regulator, winged helix family [Treponema succinifaciens DSM 2489] Length = 231 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 38/227 (16%), Positives = 82/227 (36%), Gaps = 9/227 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 +++DD +++ + + L + D+ ++ L G + Sbjct: 3 ILIVDDEEPIRELIKYNVEKQKYETFTAENGQQALELCRNKNPDLVILDLMLPDMSGLDI 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAI 115 + R + +P+I ++ + + G DD V KP R Sbjct: 63 CRIIRNDSSIKNIPIIMVTAKTEDSDIVTGLELGADDYVTKPFSPKVLLARIQSVLRRKG 122 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 S+ + + + G+ L E ILE+L ++G+ ++ QI + Sbjct: 123 EAFRSNSDEDIKIRSLVISPLKHKVTQNGKEVELSATEFSILEFLARHKGQVFSRQQIIN 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG--FDPVDSKRFLGYSI 220 A+ G V + ++ I +RKK+ + +++ R +GY I Sbjct: 183 AVKGSS-YPVTDRSIDVQILGIRKKIGDSPESSNPFIETLRGVGYRI 228 >gi|312277717|gb|ADQ62374.1| TCS response regulator CovR-like protein [Streptococcus thermophilus ND03] Length = 229 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 40/225 (17%), Positives = 86/225 (38%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G + ++ L D+ ++ L Sbjct: 5 ILIVEDERNLARFVSLELQHEGYDVVTADNGREGLELALEKDFDLILLDLML--PEMDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI------HHREILARVAAI 115 E+ R ++ ++ ++ S+ + D G DD + KP R I Sbjct: 63 EVTRRLQQEKDTYIMMMTARDSIMDIVAGLDRGADDYIIKPFAIEELLARIRATFRRQDI 122 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 K + +++ R EV PL +RE +L L++N + + + ++ Sbjct: 123 EATKKAPAKASTYRDLKLDVQNRAVVRGDEVIPLTKREFDLLNTLLSNMNQVMTREELLL 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +D+ +E NVV+ +I LR K+ + + R +GY I Sbjct: 183 QVW-KYDDVIETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 226 >gi|308068910|ref|YP_003870515.1| regulatory protein vanR [Paenibacillus polymyxa E681] gi|305858189|gb|ADM69977.1| Regulatory protein vanR [Paenibacillus polymyxa E681] Length = 231 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 43/227 (18%), Positives = 86/227 (37%), Gaps = 15/227 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + ++ S + D ++ + L Sbjct: 5 ILVVDDDEEIVKLITKSLRYEQFAIISACSGKEALSALEENHIDFIVLDI--VMPDMDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R IR VP++ +S + + G DD + KP +E+++R+ A +R++ Sbjct: 63 DVCRSIRNSYNVPILFLSARDKDIDKIVGLEIGADDYMTKPFSIQELVSRIKAHFRKVDR 122 Query: 122 SNNRAETGPIRV---------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + + L +E +IL LM + + + Q Sbjct: 123 LFKEWDELSPSNEKADAPLILNDKTFEAFLNSRKLDLSTKEFQILSILMRHPNHVLTREQ 182 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 I+ ++G DE E N V HI +RKKL +D + + +GY Sbjct: 183 IYENVWG--DEYGEINTVTVHIKNIRKKLG--SEYDFIKTIWGIGYK 225 >gi|218234629|ref|YP_002369621.1| DNA-binding response regulator [Bacillus cereus B4264] gi|218162586|gb|ACK62578.1| DNA-binding response regulator [Bacillus cereus B4264] Length = 229 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 51/229 (22%), Positives = 89/229 (38%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++++ F + + + + D+ ++ L Sbjct: 5 ILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIML--PELDGW 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR-------EILARVAA 114 + R IR S+VP+I ++ TL F+ G DD V KP +L Sbjct: 63 SVCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKV 122 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + L+ ++ I V R V L E IL Y M N+G + + Q+ Sbjct: 123 TKQLLENEDDTLSIHGIHVHFPSRTVTVDRTDINLTHTEFEILAYFMKNQGIVLTREQLI 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 S I+G ++ A ++ V SHI LR KL K + + GY + N Sbjct: 183 SRIWG-YEFAGDDRTVNSHIRNLRNKLGEK--AKYITTVVRTGYKFEGN 228 >gi|220918203|ref|YP_002493507.1| two component transcriptional regulator, winged helix family [Anaeromyxobacter dehalogenans 2CP-1] gi|219956057|gb|ACL66441.1| two component transcriptional regulator, winged helix family [Anaeromyxobacter dehalogenans 2CP-1] Length = 234 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 53/223 (23%), Positives = 90/223 (40%), Gaps = 8/223 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L++D + GV++ R DV ++ L G+ LE Sbjct: 10 LLVEDDLRLAAFTREYLEGHGVAVVHATDGRRGLDEALGGRFDVVLLDLML--PGKDGLE 67 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +R+ S VP+I ++ + + G DD + KP RE+LAR+ A+ RR Sbjct: 68 VCRELRSRSDVPVIVLTARGEEADRVMGLELGADDYLAKPFSPRELLARIRAVVRRATGR 127 Query: 123 NNRAETGPI----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 V R + G L E +L L G+ +A+ Q+ Sbjct: 128 AGPPREVVRVGGLVVDPAARRVTLDGREVALTGYEFALLHALARRAGRVLAREQLMELAG 187 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 G +EA + V+ H+S+LR+KL + + + R GY + Sbjct: 188 GSAEEAFD-RSVDVHVSRLRQKLGDDPRRPRLIKTVRGAGYLL 229 >gi|86156839|ref|YP_463624.1| two component transcriptional regulator [Anaeromyxobacter dehalogenans 2CP-C] gi|85773350|gb|ABC80187.1| two component transcriptional regulator, winged helix family [Anaeromyxobacter dehalogenans 2CP-C] Length = 230 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 42/229 (18%), Positives = 87/229 (37%), Gaps = 11/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + G G +G ++ + E L + + D+ ++ L L Sbjct: 5 ILVIEDDPSILRGLQLNLGMEGYTVRSASDGETGLQLARTEQPDLVVVDVML--PRMGGL 62 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI------HHREILARVAA 114 E+ R IR ++P++ +S + G DD + KP + L R Sbjct: 63 EVIREIRKEDPELPILILSAKNQETDKVAGLQLGADDYLGKPFGLKELLARIDALLRRRR 122 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 G I + D R V G L RE +L + + + + ++ Q+ Sbjct: 123 SRGEGAQPKAIRRAGEIELDLDARRALVDGRALELTSREFDLLAFFVTHPDRVYSREQLM 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDW 222 A++G V++ +++LR + + +++ R +GY + Sbjct: 183 EAVWGSR-YFGTARTVDNFVARLRAHIGDDAEQPRHLETVRGIGYRFNV 230 >gi|121583131|ref|YP_973572.1| two component heavy metal response transcriptional regulator [Polaromonas naphthalenivorans CJ2] gi|120596393|gb|ABM39830.1| two component heavy metal response transcriptional regulator, winged helix family [Polaromonas naphthalenivorans CJ2] Length = 226 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 45/222 (20%), Positives = 91/222 (40%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D D + G ++E ++ + + ++ L G Sbjct: 3 ILVIEDEPRAADYLRQGLMESGYAVEVAHNGTDGLHAAVNGDHGLVILDIML--PGIDGF 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119 + +R Q+P++ ++ + + FD G DD + KP E+LARV A + Sbjct: 61 AVLSALRTSRQIPVLMLTARGNTDDKVRGFDLGADDYLLKPFQFPELLARVRALLKRGQP 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 V + + + G+ L +E +L L G+ +++TQI S ++ Sbjct: 121 VVKDPVLRAADLEIDPVRHRATRAGQRIDLSAKEFALLTLLAQRAGEVLSRTQIASLVWD 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + NVVE I +LR K+ + + + R +GY ++ Sbjct: 181 IH-FDSDTNVVEVAIRRLRAKIDDPFDDKLIHTVRGVGYVLE 221 >gi|150017794|ref|YP_001310048.1| two component transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149904259|gb|ABR35092.1| two component transcriptional regulator, winged helix family [Clostridium beijerinckii NCIMB 8052] Length = 238 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 44/226 (19%), Positives = 85/226 (37%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D A DG + + + S+ + ++ L Sbjct: 7 ILVVDDEQNILDVIKAYLEKDGFDVITAMDGKSALDIYSNENIHLIVLDLML--PKMTGE 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------AI 115 E+ IRA S VP+I ++ ++ G DD + KP RE++ RV Sbjct: 65 EVCNRIRAVSSVPIIMLTAKAEEDEKIEGISMGADDYLTKPFSVRELVVRVRALLRRAYR 124 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 G + V + QG V L E +IL ++N + ++ ++ Sbjct: 125 DFSPMADILTFNNGDLEVDIKKMVVKKQGVVVNLTTNEFKILTVFLSNPTQVFSREKLVE 184 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 +G + + V+S+I +R+K+ N + + +GY Sbjct: 185 KAFGA-NYEGFDRTVDSYIKNIRQKIESNHKEPTYITTVYGMGYKF 229 >gi|312862512|ref|ZP_07722754.1| response regulator ArlR [Streptococcus vestibularis F0396] gi|311101917|gb|EFQ60118.1| response regulator ArlR [Streptococcus vestibularis F0396] Length = 229 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 36/225 (16%), Positives = 84/225 (37%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G + ++ + D+ ++ L Sbjct: 5 ILIVEDERNLARFVSLELQHEGYDVVTADNGREGLEMALEKDFDLILLDLML--PEMDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI------HHREILARVAAI 115 E+ R ++ ++ ++ + + D G DD + KP R I Sbjct: 63 EVTRRLQQEKNTYIMMMTARDLIMDIVAGLDRGADDYIVKPFAIEELLARIRATFRRQDI 122 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + +++ R E PL +RE +L L++N + + + ++ Sbjct: 123 EATKNAPSKASTYRDLKLDVQNRAVVRGDEAIPLTKREFDLLNTLLSNMNQVMTREELLL 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +D+ +E NVV+ +I LR K+ + + R +GY I Sbjct: 183 QVW-KYDDVIETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 226 >gi|158340377|ref|YP_001521733.1| two component transcriptional regulator [Acaryochloris marina MBIC11017] gi|158310618|gb|ABW32232.1| two component transcriptional regulator, winged helix family [Acaryochloris marina MBIC11017] Length = 222 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 40/225 (17%), Positives = 86/225 (38%), Gaps = 12/225 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ +D + G + L +S D+ ++ L L Sbjct: 4 ILIAEDEPRIASFIEKGLKSHGFTTTTIGDAHATLSLAASGEFDLLILDLGL--PDRDGL 61 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIY 116 E+ +R H P++ ++ +Q + + G DD + KP + R+ Sbjct: 62 EVLADLRGHGAKLPILILTARDDIQDKISGLEGGADDYMTKPFRFEELLARVRVRLRTNI 121 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + + R +V + LP RE + E + G+ +++ Q+ Sbjct: 122 HQSTSQPLTMVARNVVLDLRARKAKVHDQWIELPAREFILTEAFFQHPGQVLSRQQLLDR 181 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G +D N+V+ ++ LRKKL + D + + R +GY ++ Sbjct: 182 VWG-YDYDPGSNIVDVYVGYLRKKLGD----DLIQTVRGVGYRLN 221 >gi|156744350|ref|YP_001434479.1| two component transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156235678|gb|ABU60461.1| two component transcriptional regulator, winged helix family [Roseiflexus castenholzii DSM 13941] Length = 229 Score = 142 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 42/222 (18%), Positives = 90/222 (40%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++D +G S+ S + D+ ++ Sbjct: 9 ILIVDDEPGLRDLLRINLEHEGFSVIEAESGAQGLQMVRDQHPDLMILDVM--MPEMDGW 66 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119 E+ R +R SQ+P++ ++ + + +SG DD + KP + E+ AR+ A Sbjct: 67 EVCRRLREFSQMPVLMLTARTQSKDIVTGLESGADDYLTKPFNMDELTARIRALLRRVPS 126 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 A G I + R+ V+GE L E +L L + G + + ++G Sbjct: 127 PNRPIVAGGGEIMIDKQKREVLVRGEPVDLTPTEYDLLLLLAEHAGAVLDHETLLRGVWG 186 Query: 180 LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + + + ++ +I LR+K+ + + ++ +GY + Sbjct: 187 -HEYTKDNDYLKVYIWHLRRKIEQDPREPKLLLTEWGVGYRL 227 >gi|326777535|ref|ZP_08236800.1| two component transcriptional regulator, winged helix family [Streptomyces cf. griseus XylebKG-1] gi|326657868|gb|EGE42714.1| two component transcriptional regulator, winged helix family [Streptomyces cf. griseus XylebKG-1] Length = 244 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 51/234 (21%), Positives = 100/234 (42%), Gaps = 19/234 (8%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA---REDVSAIEAFLIGKGEK 59 +LI+D A V+DG + G +E + E L + R +++ ++ L G Sbjct: 11 LLIEDDASVRDGMELVLRRHGYGVETAATGEQALALLAGERGARVELAVLDLML--PGMD 68 Query: 60 VLELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 E+ R IRA ++P+I ++ + + ++G DD V KP+ + AR+ A RR Sbjct: 69 GFEVCRRIRARAPKLPVIMLTARGDDRDIVAGLEAGADDYVVKPVTAPVLEARIRAALRR 128 Query: 119 LKVSNNR-----------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167 + + + + + G G LP E R+L L A+ G+ Sbjct: 129 AEPYPRQGPAGQAPDADRTDHAGLVIDRAGLTVTKHGAAIALPPTELRVLLELSASPGRV 188 Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + + Q+ ++++ + +V++ + +LR K+ + V + R GY Sbjct: 189 LTREQLLASVWD-HSFLGDSRLVDAAVGRLRAKIEDLPSRPRYVQTVRGFGYRF 241 >gi|269138423|ref|YP_003295123.1| two-component transcriptional regulator, winged helix family [Edwardsiella tarda EIB202] gi|267984083|gb|ACY83912.1| two-component transcriptional regulator, winged helix family [Edwardsiella tarda EIB202] gi|304558449|gb|ADM41113.1| Response regulator BaeR [Edwardsiella tarda FL6-60] Length = 243 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 50/220 (22%), Positives = 94/220 (42%), Gaps = 4/220 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + I G + + D+ ++ L+ G L Sbjct: 19 LIVEDEPKLGQLLIDYLIAAGYRPHWLSRGDEVLPYLQEHLCDLILLD--LMLPGVDGLT 76 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R IR S+VP++ ++ L + G DD + KP RE++ARV I RR + Sbjct: 77 LCREIRRTSEVPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCGLQ 136 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 + +E P+ + + + L + E R+L+ L G +++ Q+ + +Y + Sbjct: 137 DTLSEPAPLLIDESRFQASYRQQPLDLTQAEFRLLKTLATQPGSVLSREQLLNHLYDDY- 195 Query: 183 EAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 V + V+SHI LR+KL + + S +GY + Sbjct: 196 RVVTDRTVDSHIKNLRRKLEPVEGDEPLIRSVYGVGYRWE 235 >gi|302879699|ref|YP_003848263.1| two component transcriptional regulator PhoB, winged helix family [Gallionella capsiferriformans ES-2] gi|302582488|gb|ADL56499.1| two component transcriptional regulator PhoB, winged helix family [Gallionella capsiferriformans ES-2] Length = 229 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 45/225 (20%), Positives = 88/225 (39%), Gaps = 4/225 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D +++ + G + E D+ ++ L G + Sbjct: 5 ILIVEDEPAIQELLVFNVTQAGFVALRASDAEEAWQQIRDYAPDLILLDWMLPSTSGVVL 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R VP+I ++ + + +SG DD + KP RE++AR+ A+ RR Sbjct: 65 AKQLRSEARTKDVPIIMLTARGDERDKVLGLESGADDYITKPFSPRELMARIRAVMRRHI 124 Query: 121 VSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + + + +G L E R+L + M + + ++TQ+ ++ Sbjct: 125 PTLSEDKVASGGLELSPTSHRVTAKGLTIELGPTEFRLLHFFMTHAERVYSRTQLLDQVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 G VEE V+ HI +LR L + + R GY N Sbjct: 185 GT-QVFVEERTVDVHIRRLRASLEASGLDGLIQTVRGSGYRFSTN 228 >gi|89093375|ref|ZP_01166324.1| DNA-binding response regulator BaeS [Oceanospirillum sp. MED92] gi|89082354|gb|EAR61577.1| DNA-binding response regulator BaeS [Oceanospirillum sp. MED92] Length = 229 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 46/224 (20%), Positives = 91/224 (40%), Gaps = 6/224 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G + ++ V ++ L G+ + Sbjct: 7 ILIVEDEVGLAEILRDYLEASGYLVTMIHNGLEVTGWVKQHNPAVILLDLML--PGKDGM 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IR S P+I + L + G DD V KP RE++ARV A RR+ Sbjct: 65 EICKEIRTFSNTPIIMTTARVEEIDRLLGLELGADDYVCKPYSPREVVARVKATLRRIAA 124 Query: 122 SNNRAETGPIRV--FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + + + GE L E R+++ + N+G+ +++Q+ Y Sbjct: 125 FSGNTPKTADPISLDEERFLAFIGGEQLELTPVEFRMMQTFLDNQGRVFSRSQLMDKAY- 183 Query: 180 LFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222 V + V++HI LRKK++ + + S +GY ++ Sbjct: 184 TDQRVVSDRTVDTHIKNLRKKIQPHLPEGEVIHSVYGVGYKFEF 227 >gi|226943549|ref|YP_002798622.1| Response regulator [Azotobacter vinelandii DJ] gi|226718476|gb|ACO77647.1| Response regulator [Azotobacter vinelandii DJ] Length = 226 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 51/222 (22%), Positives = 91/222 (40%), Gaps = 7/222 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + E L D+ ++ L G L Sbjct: 6 ILVVEDEPKLAALIGDYLRAADFQAETLADGLRVIPLLRRQPHDLVILDLML--PGRDGL 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R +R S+VP+I ++ L ++G DD + KP RE++ARV L+ Sbjct: 64 DICRELRGFSRVPVIMVTARVEEIDRLLGLETGADDYLCKPFSPRELVARV---KAVLRR 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 S + G L E R+L+ L+A G+ + + Q+ + +Y Sbjct: 121 SGKPPPLPGLLTDPASYRAYCNGIPLDLTPVEFRLLDALLARPGQALTREQLMNHLY-ED 179 Query: 182 DEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDW 222 V + V+SH+ LR+KL + G DP+ S +GY ++W Sbjct: 180 HRIVTDRTVDSHVKNLRRKLQQAAPGEDPIRSIYGVGYCLEW 221 >gi|325831421|ref|ZP_08164675.1| sensory transduction protein RegX3 [Eggerthella sp. HGA1] gi|325486675|gb|EGC89123.1| sensory transduction protein RegX3 [Eggerthella sp. HGA1] Length = 232 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 58/227 (25%), Positives = 91/227 (40%), Gaps = 10/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 + DD + D L + G + F + Q+ D+ ++ G Sbjct: 7 IAVCDDEQAIADLVGQLLVEAGFAPTVFYAAPDLLACQADDPFDLVILDIM--MPGMDGF 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118 R +R S VP+I ++ + F+ G DD V KP RE++ARV A RR Sbjct: 65 ACCRELRRTSSVPIIFLTAKDEEVDKVVGFELGADDYVVKPFKPRELVARVRARLRRAIS 124 Query: 119 ----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + E I + + GE L +E IL LM ++G+ VA +F Sbjct: 125 NDVAREDGPGMLECCGIALDESAYTATLHGEALSLTPKEFAILACLMRDQGRPVASRDLF 184 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 +++G A N V HI LRKKL + V++ +GY + Sbjct: 185 ESVWGEIANAQSNNTVMVHIRHLRKKLAAVDSSQEFVETVWGVGYKL 231 >gi|300917087|ref|ZP_07133778.1| response regulator receiver domain protein [Escherichia coli MS 115-1] gi|300415654|gb|EFJ98964.1| response regulator receiver domain protein [Escherichia coli MS 115-1] Length = 240 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 43/224 (19%), Positives = 88/224 (39%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + I + + + D+ ++ L G L Sbjct: 13 ILIVEDEPKLGHLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLML--PGTDGL 70 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 L R IR S +P++ ++ L + G DD + KP RE++ARV + Sbjct: 71 TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + P+ + +G++ L E R+L+ L GK ++ + + +Y Sbjct: 131 QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREHLLNHLY 190 Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + V + ++SHI LR+KL + + + +GY + Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 >gi|298345637|ref|YP_003718324.1| response regulator [Mobiluncus curtisii ATCC 43063] gi|304390674|ref|ZP_07372627.1| response regulator [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315654235|ref|ZP_07907143.1| DNA-binding response regulator [Mobiluncus curtisii ATCC 51333] gi|315657866|ref|ZP_07910746.1| DNA-binding response regulator [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|298235698|gb|ADI66830.1| response regulator [Mobiluncus curtisii ATCC 43063] gi|304326430|gb|EFL93675.1| response regulator [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315491270|gb|EFU80887.1| DNA-binding response regulator [Mobiluncus curtisii ATCC 51333] gi|315491663|gb|EFU81274.1| DNA-binding response regulator [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 241 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 55/232 (23%), Positives = 103/232 (44%), Gaps = 13/232 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++D + G + L ++ + D+ ++ L Sbjct: 12 LLVVDDEPNIRDLLASSLRFAGYDVLSAGDGTEALRLATTEKPDLVILDVML--PDMDGF 69 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R +RA +P++ ++ ++ ++ +G DD V KP E++AR+ AI RR K Sbjct: 70 TVTRKLRASGIDMPILFLTAKDDMRDKVEGLQAGGDDYVTKPFGLEEVVARINAILRRTK 129 Query: 121 VSNNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 S + + + G + L E ++L YLM N G+ V+KTQI + Sbjct: 130 RSAVEQPLLRVADLELDDNLYEVHRGGRLIDLSPTEFKLLRYLMVNEGRVVSKTQILDHV 189 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-----FDPVDSKRFLGYSI-DWN 223 + +D + +VES+IS LR+KL + ++R +GY + D N Sbjct: 190 W-EYDWEGDAAIVESYISYLRRKLDAPDETGSIPPSLIQTRRGVGYLLRDPN 240 >gi|332140178|ref|YP_004425916.1| putative DNA-binding response regulator PhoB [Alteromonas macleodii str. 'Deep ecotype'] gi|327550200|gb|AEA96918.1| putative DNA-binding response regulator PhoB [Alteromonas macleodii str. 'Deep ecotype'] Length = 229 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 35/223 (15%), Positives = 87/223 (39%), Gaps = 8/223 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D A +++ + G ++ + + D+ ++ L G ++ Sbjct: 6 LVVEDEAPIREMLKFVLEQSGFNIIEAEDYDIAQEKICEPYPDLILLDWML--PGGSGVQ 63 Query: 63 LPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYR 117 L + ++ H +P+I ++ + + D+G DD V KP +E+ + Sbjct: 64 LAKSLKQHEFTRDIPVIMLTARGEEEDKIRGLDAGADDYVTKPFSPKELVARIKAVMRRV 123 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + E +++ E + E ++L + M + + ++ + + Sbjct: 124 TPTSNEEPIEFNGLKLEPVSHRVMANEEPLDMGPTEFKLLHFFMTHPERVYSRELLLDNV 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G + VE+ V+ HI +LRK + + + R GY Sbjct: 184 WGT-NVYVEDRTVDVHIRRLRKAISRHGHDAMIQTVRGAGYRF 225 >gi|329577270|gb|EGG58733.1| response regulator receiver domain protein [Enterococcus faecalis TX1467] Length = 229 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 43/227 (18%), Positives = 91/227 (40%), Gaps = 9/227 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD + + ++G + + D+ + ++ + Sbjct: 3 ILVADDDKEIVELLSIYIHNEGYEVVKAYDGKEALSKL-HTTPDIDLLILDIMMPIMDGM 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + +R SQ+P+I ++ + + +G DD V +P + E++ARV +I RR ++ Sbjct: 62 EVVKELRKESQIPIIMLTAKTTDMDKIKGLVAGADDYVTEPFNPLEVMARVKSILRRSQM 121 Query: 122 SNNRAETGP------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + E + ++G+ L E IL L ++ + + +IF Sbjct: 122 QLTKEEPDELEVGPLMINKDSHEVKTIEGKEIQLTALEFGILYLLASHPNRVFSADEIFE 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221 ++ + V V H+S LR K+ G + + +GY ID Sbjct: 182 RVW-QQESIVSAKTVMVHVSHLRDKIEEATGGEKVIQTVWGVGYKID 227 >gi|228997560|ref|ZP_04157173.1| Sensor histidine kinase [Bacillus mycoides Rock3-17] gi|228762188|gb|EEM11121.1| Sensor histidine kinase [Bacillus mycoides Rock3-17] Length = 231 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 45/229 (19%), Positives = 87/229 (37%), Gaps = 11/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD + + ++G S+ + + S + D+ ++ L Sbjct: 6 ILIIDDDKEIVELLAVYLRNEGYSIYKAYDGDEALHMLSLHQIDLMILDIM--MPKRNGL 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAA 114 E+ + +R + VP++ +S + +G DD + KP + E++ R + Sbjct: 64 EVCQQVREENTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELIARVKALLRRSSF 123 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + + +V GE L E IL L +N G+ + +IF Sbjct: 124 QQVTSLNDDGIIRIRSVEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIF 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 ++ D V HIS LR+KL G + + +GY I+ Sbjct: 184 ERVWNE-DGYGSNKTVMVHISNLREKLETGTNGEKLIHTVWGVGYKIEK 231 >gi|258404600|ref|YP_003197342.1| two component transcriptional regulator, winged helix family [Desulfohalobium retbaense DSM 5692] gi|257796827|gb|ACV67764.1| two component transcriptional regulator, winged helix family [Desulfohalobium retbaense DSM 5692] Length = 230 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 51/224 (22%), Positives = 96/224 (42%), Gaps = 11/224 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L++D + + F + G + + + SSA D+ ++ L G+ LE Sbjct: 7 LLVEDEVDILNLLRINFENGGFRVLTAENGFQALDVLSSAPVDLVVLDLML--PGKDGLE 64 Query: 63 LPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIY 116 + R +R+ +P+I ++ + + G DD V KP RE V Sbjct: 65 VCRELRSRESTKHLPVIMLTAKGDEVDRIVGLELGADDYVVKPFSPRELLLRAKAVMRRG 124 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + E+G +RV V GE L E R+L +L+ +RGK + Q+ + Sbjct: 125 KPQPEEETLWESGGLRVDFGTYKVTVDGEDRELTATEFRLLVHLIRSRGKVQTRDQLLNK 184 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G ++ V++H+ +LR K+ V++ R +GY + Sbjct: 185 VWG-YEFEGYARTVDTHVRRLRHKIEPYAA--IVETVRGVGYRL 225 >gi|168180761|ref|ZP_02615425.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|182668592|gb|EDT80571.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] Length = 235 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 39/228 (17%), Positives = 81/228 (35%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + +G + S + ++ + Sbjct: 6 ILIVEDDVNINNMIKESLIKEGYDIGQAFHGLEAVEKFQSENYHMVIMDIM--MPVMDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI--------HHREILARVA 113 E R IR S+VP+I +S + G DD + KP I + Sbjct: 64 EAMRRIREKSKVPIIILSAKGEDSDKIIGLGMGADDYIVKPFSVPELIARVKCNIRRAIY 123 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + N E G ++ + G+ L +E +IL+ N + K QI Sbjct: 124 YNETKSIKENKIHEYGDVKFDMNNYTVTKGGKELTLTAKEMKILKLFFENPNRVFTKVQI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 + +++G + + N V H+ +LR K+ + +++ +GY + Sbjct: 184 YDSVWGE-EFLSDYNTVTVHMRRLRSKIEDDPNNPKLIETVWGIGYKL 230 >gi|304439740|ref|ZP_07399638.1| response regulator [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371727|gb|EFM25335.1| response regulator [Peptoniphilus duerdenii ATCC BAA-1640] Length = 225 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 46/224 (20%), Positives = 95/224 (42%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ +G ++ DV ++ Sbjct: 4 ILVVDDEEKIREVIKTYAEFEGHTVVEAVDGIDAVEKAREQDFDVIVMDIM--MPRLDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + I+ +P++ +S L F+ G+DD V KP +E++AR+ I R K Sbjct: 62 SAYKEIKKTKNIPVLMLSARGEEYDKLFGFEIGIDDYVVKPFSPKELMARLNVIVTRNKK 121 Query: 122 SNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 N+ ++ DGR V GE L +E +L YL N+ +++ Q+ + ++G Sbjct: 122 LNDNRVMEFEGLKIDLDGRSVSVDGERVDLTPKEYELLTYLAKNKNIALSREQLLNQVWG 181 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 +D ++ V++HI LR +++ + + R +GY + + Sbjct: 182 -YDFYGDDRTVDTHIKMLRNSIKHY--RKFIVTVRGVGYKFEED 222 >gi|302521422|ref|ZP_07273764.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. SPB78] gi|333024929|ref|ZP_08452993.1| putative phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. Tu6071] gi|302430317|gb|EFL02133.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. SPB78] gi|332744781|gb|EGJ75222.1| putative phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. Tu6071] Length = 229 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 43/219 (19%), Positives = 92/219 (42%), Gaps = 5/219 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + + +G + + D+ ++ L G +E Sbjct: 10 LVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFRDTKPDLVLLDLML--PGRDGIE 67 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLKV 121 + R+IRA S VP++ ++ + +SG DD + KP +E++AR+ A R + Sbjct: 68 VCRLIRAESGVPVVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEEP 127 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + G + + G + +G+ L E +L L + + + ++G + Sbjct: 128 APEQLTIGDLVIDVAGHSVKREGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWG-Y 186 Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219 A + +V H+ +LR K+ + V + R +GY Sbjct: 187 RHAADTRLVNVHVQRLRSKVERDPERPEIVVTVRGVGYK 225 >gi|239982355|ref|ZP_04704879.1| putative two-component system response regulator [Streptomyces albus J1074] gi|291454200|ref|ZP_06593590.1| response regulator [Streptomyces albus J1074] gi|291357149|gb|EFE84051.1| response regulator [Streptomyces albus J1074] Length = 221 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 49/223 (21%), Positives = 98/223 (43%), Gaps = 10/223 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G +++ + S + D+ ++ L G Sbjct: 3 LLIVEDEKRLALSLAKGLTAEGYAVDVVHDGLEGLHRASESPYDLLVLDIML--PGMNGY 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + +RA P++ ++ + D+G DD + KP + ++ARV A+ RR Sbjct: 61 RVCAALRAAGNDVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARVRALLRRRA 120 Query: 121 --VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++ G +RV + R + G+ L +E +LE L+ G+ V+K I ++ Sbjct: 121 GAGASPVHTVGGLRVDTAARRVQRDGDEVALTAKEFAVLEQLVLRAGQVVSKADILEHVW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 F + N+VE +IS LR+KL G + + R +GY ++ Sbjct: 181 D-FAYDGDPNIVEVYISALRRKL----GAQAIRTVRGMGYRLE 218 >gi|188585846|ref|YP_001917391.1| two component transcriptional regulator, winged helix family [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350533|gb|ACB84803.1| two component transcriptional regulator, winged helix family [Natranaerobius thermophilus JW/NM-WN-LF] Length = 233 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 47/225 (20%), Positives = 89/225 (39%), Gaps = 6/225 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61 +++DD + + +G S++ + + ++ L G +V Sbjct: 7 LIVDDDKDLCNMVKLTLEHEGFSVDMAYDGKTGYEYVEKYNYNTVILDIMLPEMDGWEVC 66 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118 R +S+VP+I ++ + G DD V KP RE + + + Sbjct: 67 HKIRNSINNSKVPIIMLTAKVEEDDKIMGLKLGADDYVIKPFSPRELVARVRALIRRDQD 126 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 K + E G + V + V+ LP +E +L L+ N + + +I I+ Sbjct: 127 FKDKDKILEKGDLTVDAHSYKVFVKDNEVDLPPKEFELLYLLIKNPERVFTREEILEKIW 186 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDW 222 G F A V+ H+ ++RKKL + GFD + + +GY + Sbjct: 187 G-FSFAGGTRTVDEHVKRIRKKLEPESGFDSLIQTVWGVGYKFEV 230 >gi|325262406|ref|ZP_08129143.1| DNA-binding response regulator [Clostridium sp. D5] gi|324032238|gb|EGB93516.1| DNA-binding response regulator [Clostridium sp. D5] Length = 272 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 50/228 (21%), Positives = 84/228 (36%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 + DD A + D + + + + S + + ++ G Sbjct: 45 ILAADDEAELLDVLELYLERENIGIRKAKDGIEAMEIFRSEKVHLVLLDIM--MPGLDGY 102 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R IR S++P I ++ + + G DD + KP + E++AR+ A RR Sbjct: 103 AVLRKIRETSRIPAIMLTAKSEDYDKILGLELGADDYITKPYNPLEVVARIKAQLRRNYD 162 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEV-------FPLPRRERRILEYLMANRGKRVAKTQIF 174 + G V+ L E +IL M G+ K QIF Sbjct: 163 YREETGQNREVLRLRGLQLCVEEGNVELDGRAVELTSTEFKILRLFMGQPGRIFTKQQIF 222 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221 ++ ++N V HIS LR KL G P + + + LGY I+ Sbjct: 223 ENVW-EDSYEGDDNTVMVHISNLRGKLEQSGGQPPQIKTVKGLGYKIE 269 >gi|315648980|ref|ZP_07902074.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] gi|315275661|gb|EFU39015.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] Length = 228 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 45/223 (20%), Positives = 90/223 (40%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +G + ++ + S DV ++ Sbjct: 5 ILIVDDDEKIISMLRRGLAFEGYDVLTASNGAEGLKVILSEDPDVVVLDVM--MPQVDGF 62 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYR 117 E R +R S P++ ++ ++ + D+G DD + KP E + + Sbjct: 63 EALRRLREGGSTTPVLMLTAKDEVENRVKGLDTGADDYLVKPFALEELLARVRALLRRKT 122 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 SN+R + + +D R+ G+ L +E +L M N + +++ I I Sbjct: 123 GDDSSNHRLTYEDLIMDTDAREVIRSGQRLELTAKEFELLHLFMQNPKRVLSRDLIMDKI 182 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G +D + E NV+E +I+ LR+K G + + R GY + Sbjct: 183 WG-YDYSGESNVLEVYIAMLRQKTEEHGGKRLIQTIRGAGYIL 224 >gi|229020065|ref|ZP_04176847.1| Two-component response regulator [Bacillus cereus AH1273] gi|229026294|ref|ZP_04182653.1| Two-component response regulator [Bacillus cereus AH1272] gi|228735010|gb|EEL85646.1| Two-component response regulator [Bacillus cereus AH1272] gi|228741222|gb|EEL91438.1| Two-component response regulator [Bacillus cereus AH1273] Length = 229 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 51/229 (22%), Positives = 88/229 (38%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++++ F + + + + D+ ++ L Sbjct: 5 ILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIML--PELDGW 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR-------EILARVAA 114 + R IR S VP+I ++ TL F+ G DD V KP +L Sbjct: 63 SVCRRIRKTSGVPIIMLTARVDEDDTLLGFELGADDYVAKPYSPPILLARAKRLLESRKT 122 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + L+ ++ I V R V L E IL Y M N+G + + Q+ Sbjct: 123 TNKPLENEDDTLSIHGIHVHFPSRTVTVDEADITLTHTEFEILAYFMKNQGIVLTREQLI 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 S I+G ++ A ++ V SHI LR KL K + + GY + N Sbjct: 183 SRIWG-YEFAGDDRTVNSHIRNLRNKLGEK--AKYITTVVRTGYKFEGN 228 >gi|118593260|ref|ZP_01550645.1| two-component response regulator [Stappia aggregata IAM 12614] gi|118434151|gb|EAV40807.1| two-component response regulator [Stappia aggregata IAM 12614] Length = 240 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 47/227 (20%), Positives = 85/227 (37%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++D E + + ++ L L Sbjct: 6 ILVVDDDPHIRDVICFALQKASYVFEVAADGKEALDKALLCNPSLIVLDIGL--PEMDGL 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 ++ R +R S+VP++ +S + + G DD V KP RE++ARV AI +R Sbjct: 64 DVCRHLRRTSEVPILFLSARDDEIDRIVGLELGADDYVTKPFSPRELIARVGAILKRYGG 123 Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 G + + R V L E IL L+A + QI Sbjct: 124 LTAAQTDEDLPALRFGAVELDRSQRHVSVAETPVTLTAIEFDILATLLARPKIVFTREQI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + Y + V + ++SHI +R KL + D +++ +G+ + Sbjct: 184 LQSAY-RDNIHVSDRTIDSHIRNIRAKLGSAGCGDAIETVHGVGFRL 229 >gi|332968994|gb|EGK08036.1| phosphate regulon transcriptional regulatory protein PhoB [Psychrobacter sp. 1501(2011)] Length = 232 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 41/223 (18%), Positives = 88/223 (39%), Gaps = 5/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG--KGEK 59 ++++D +++ + G + R + ++ L G G Sbjct: 6 ILVVEDEPAIREMIVTTLEMSGFECLQAEDVNDAHNQVVDHRPAMILLDWMLPGNQSGID 65 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 + + S++P+I ++ + D+G DD + KP RE+++R+ A+ RR Sbjct: 66 LCRRLKKDEMLSEIPIIMLTARGEEDNKVQGLDAGADDYITKPFSTRELVSRIKAVLRRS 125 Query: 120 KVSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 V + + + G + E R+L + M++ + +TQ+ + Sbjct: 126 SVLSGEKPIEAEGLSLDPVSQRLSADGTPVEIGPTEYRLLAFFMSHPERAYTRTQLLDQV 185 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G + VE+ ++ HI +LRK L + + R GY Sbjct: 186 WG-GNVYVEDRTIDVHIRRLRKVLEPYNYAGFIQTVRGTGYRF 227 >gi|304317383|ref|YP_003852528.1| transcriptional regulator [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778885|gb|ADL69444.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 222 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 46/220 (20%), Positives = 93/220 (42%), Gaps = 7/220 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++I+D ++D + + + D+ ++ L Sbjct: 5 LVIEDEEGMRDILKTYLEKNNFDAFFAEDGNTGIDMFKNNSFDIVLLDVML--PDMSGWN 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRLK 120 + + IR S++P++ I+ L F+ G DD V KP RE+ + + Sbjct: 63 VLKTIRESSKIPVMMITARSEEYDRLLGFELGADDYVVKPFSPREVVARIKAILSRSKWA 122 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 S+N I + +D R +V G+ L +E +L L N GK +++ + + ++G Sbjct: 123 ESDNLISFSGITIDTDSRVVKVDGKKIDLTPKEFDLLSLLAQNMGKALSREKCLNVVWG- 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ + V++HI +LR+KL +K D + + GY + Sbjct: 182 YEFFGDLRTVDTHIKQLREKLGDK--RDIIKTVWGYGYKL 219 >gi|77459601|ref|YP_349108.1| two component heavy metal response transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77383604|gb|ABA75117.1| response regulatory protein [Pseudomonas fluorescens Pf0-1] Length = 223 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 39/221 (17%), Positives = 89/221 (40%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + + G S+ L DV ++ Sbjct: 3 ILVVEDEPKAGNYLLNGLQELGYSVSLARDGADGLHLALEFDFDVIVLDVM--MPKMDGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120 E+ R +R + P++ ++ + + + G DD + KP E++AR+ R Sbjct: 61 EVLRRLRKETDTPVLFLTARDDIADRVKGLELGADDYLIKPFSFAELVARLRTLTRRGPI 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + +++ R G L +E +L+ A+ G+ ++++ I S ++ + Sbjct: 121 HEEEQLQVADLQIDVLKRRVTRAGNRITLTNKEFALLQLFAAHTGQVLSRSLIASRVWDM 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + NVV+ + +LR K+ + + S R +GY D Sbjct: 181 -NFDSDTNVVDVAVRRLRAKIDDPFPLKLIHSVRGIGYRFD 220 >gi|228994834|ref|ZP_04154632.1| Response regulator [Bacillus pseudomycoides DSM 12442] gi|228764942|gb|EEM13698.1| Response regulator [Bacillus pseudomycoides DSM 12442] Length = 240 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 39/225 (17%), Positives = 91/225 (40%), Gaps = 8/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +++DD + + + +G + + + + + D+ ++ L Sbjct: 13 ILIVDDEKEILNLLETVLKKEGFQHIYTYTTGAEGIRMCKRVQPDLIMLDIML--PDLDG 70 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + + IR + VP+ +S + G DD + KP +E+ ++ A +RR + Sbjct: 71 YSVCQQIRQFTFVPIFFLSAKNEDLDKILGLSIGGDDYITKPFSPKEVAYKIKAFFRRNQ 130 Query: 121 VS---NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + G I + + L +E IL +L+ N + +K +++ A+ Sbjct: 131 YQEKARIMYQFGDITIDEAQGTVLKGDTLLSLTAKEFNILLFLIKNPNQIFSKARLYEAV 190 Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 +G +N++ H+ LR+K+ + + + R LGY ++ Sbjct: 191 WGET-YLGNDNIMMVHMRHLREKIEDNPSNPHYLVTVRGLGYKLN 234 >gi|229032474|ref|ZP_04188442.1| Two-component response regulator [Bacillus cereus AH1271] gi|228728843|gb|EEL79851.1| Two-component response regulator [Bacillus cereus AH1271] Length = 229 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 50/229 (21%), Positives = 89/229 (38%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++++ F + + + + D+ ++ L Sbjct: 5 ILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIML--PELDGW 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR-------EILARVAA 114 + R IR S+VP+I ++ TL F+ G DD V KP +L Sbjct: 63 SVCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKV 122 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + L+ ++ I V R + L E IL Y M N+G + + Q+ Sbjct: 123 TKQLLENEDDTLSIHGIHVHFPSRTVTIDRTDINLTHTEFEILAYFMKNQGIVLTREQLI 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 S I+G ++ A ++ V SHI LR KL K + + GY + N Sbjct: 183 SRIWG-YEFAGDDRTVNSHIRNLRNKLGEK--AKYITTVVRTGYKFEGN 228 >gi|261417769|ref|YP_003251451.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC61] gi|319767418|ref|YP_004132919.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC52] gi|261374226|gb|ACX76969.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC61] gi|317112284|gb|ADU94776.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC52] Length = 224 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 43/222 (19%), Positives = 91/222 (40%), Gaps = 8/222 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD ++ + G E L S D ++ + Sbjct: 7 LIVDDEEEMRLLVGMYLENAGFRCLEAGDGEEALVLLSQHPVDAVLLDVM--MPKQDGFA 64 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRRL 119 + IR S VP++ ++ + G DD + KP E++AR+ +R+ Sbjct: 65 VCARIREQSDVPILFLTALGEEWDKVKGLKLGGDDYIVKPFSPGELIARLEAVLRRVQRV 124 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + ++ R + G + + GR V G+ L +E +L +L +RG+ ++ + ++G Sbjct: 125 RENDGRLQFGDLAIDEKGRTVTVGGKPVKLTLKEFELLLFLAKHRGQVFSRDDLLVKVWG 184 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +D V++H+ LR KL++ + + +GY + Sbjct: 185 -YDYTGNARTVDTHVKTLRMKLKD--AARHIQTVWGIGYKFE 223 >gi|305672956|ref|YP_003864627.1| two-component response regulator [Bacillus subtilis subsp. spizizenii str. W23] gi|305411199|gb|ADM36317.1| two-component response regulator (paired with YcbM) [Bacillus subtilis subsp. spizizenii str. W23] Length = 230 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 41/227 (18%), Positives = 81/227 (35%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + + +G + E L D+ ++ L + Sbjct: 4 ILLVEDDHSISEMVDHYLTKEGFEMVHAFDGEEGIRLFKQDSYDLILLDIML--PKLNGM 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI-------LARVAA 114 + +IIR S +P++ IS G DD + KP E+ + R Sbjct: 62 DFLKIIREKSNIPVLMISAKDGDVDKALGLGFGADDYIAKPFSMIELTARVKAAIRRATQ 121 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N + + D GE L E ++L AN K K QI+ Sbjct: 122 YSAEEPAENKVIRIHQLAIDIDNVSVLKNGEPLQLTSTEWQLLCLFAANPKKVFTKEQIY 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 +++ + ++N++ H+ +LR K+ + + + +GY + Sbjct: 182 RSVWNE-EYFGDQNIINVHMRRLRGKIEDDPSSPQYIKTLWGIGYKL 227 >gi|239636903|ref|ZP_04677902.1| response regulator ArlR [Staphylococcus warneri L37603] gi|239597577|gb|EEQ80075.1| response regulator ArlR [Staphylococcus warneri L37603] gi|330685054|gb|EGG96724.1| response regulator ArlR [Staphylococcus epidermidis VCU121] Length = 219 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 45/219 (20%), Positives = 85/219 (38%), Gaps = 4/219 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + ++ N + D+ ++ L L Sbjct: 4 ILIVEDEKNLARFIELELTHENYQVDIENDGATGLDKALNKTYDLIILDLML--PNINGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR P+I I+ + D G DD + KP E+L R + Sbjct: 62 EICRQIRQQQTTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELL-ARIRAILRRQP 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + I + + + V G L + E + L N+ + + QI + ++G + Sbjct: 121 KKDTININGIIIDKEAFEVTVDGTQLDLTKTEYDLFYVLAENKNHVLQREQILNHVWG-Y 179 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + VE NVV+ +I LR KL+ +++ R +GY I Sbjct: 180 NTEVETNVVDVYIRYLRNKLKPFGKDKVIETVRGVGYVI 218 >gi|228993566|ref|ZP_04153474.1| Two-component response regulator [Bacillus pseudomycoides DSM 12442] gi|228766157|gb|EEM14803.1| Two-component response regulator [Bacillus pseudomycoides DSM 12442] Length = 229 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 50/229 (21%), Positives = 90/229 (39%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++++ F ++ + + L + ++ L Sbjct: 5 ILIVEDEDILREILKDYFLNEQYKVLEARDGKEALSLFEEEEVHLVILDIML--PELDGW 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR-------EILARVAA 114 + R IR SQVP+I ++ TL F+ G DD V KP +L Sbjct: 63 SVCRRIRKTSQVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRIL 122 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + ++ I V R ++G L E IL Y M N+ + + Q+ Sbjct: 123 TSKSPSNEDDTLSIHGICVHFPSRIVTIEGVDINLTHTEFEILTYFMQNQWIVLTREQLI 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 S I+G ++ A ++ V SHI LR KL +K + + +GY + N Sbjct: 183 SRIWG-YEFAGDDRTVNSHIRNLRNKLGDK--AKYITTVVRMGYKFEGN 228 >gi|218682120|ref|ZP_03529721.1| putative phosphate regulon two-component regulator transcriptional regulatory protein [Rhizobium etli CIAT 894] Length = 227 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 47/223 (21%), Positives = 93/223 (41%), Gaps = 8/223 (3%) Query: 4 LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63 +++D + +G ++ + E D+ ++ L G +EL Sbjct: 7 VVEDEEALSVLLRYNLEAEGFEVDTILRGDEAEMRLQERTPDLLILDWML--PGVSGIEL 64 Query: 64 PRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118 R +R + P+I ++ + +G DD V KP E+ + R Sbjct: 65 CRRLRMRPETERLPIIMLTARGEESERVRGLSTGADDYVVKPFSTPELVARVKAMLRRAR 124 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 +V + + G I + + + L E R+LE+LM++ G+ +++Q+ ++ Sbjct: 125 PEVLSTVLKCGDIELDRETHRVHRKSREVRLGPTEFRLLEFLMSSPGRVFSRSQLLDGVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 G D V+E V+ H+ +LRK L D + + R GYS++ Sbjct: 185 G-HDIYVDERTVDVHVGRLRKALNFSNMQDVIRTVRGAGYSME 226 >gi|297158456|gb|ADI08168.1| two-component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 247 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 44/230 (19%), Positives = 86/230 (37%), Gaps = 14/230 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V++ +G E + ++ ++ + L Sbjct: 13 ILIVDDEPAVREALQRSLAFEGYLTETALDGLDALEKVGAYDPELIVLDV--LMPRMDGL 70 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 R +RA VP++ ++ ++ + D+G DD + KP E+LAR+ A+ RR Sbjct: 71 TAARRLRATGVTVPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELLARIRALLRRSS 130 Query: 121 VSNNRAETGPIRVFSDGRDPEVQG----------EVFPLPRRERRILEYLMANRGKRVAK 170 + L R E +LE +A+ + + + Sbjct: 131 YAAAAGAVAETGADELTFADLRMNLATREVNRGGRRVELTRTEFTLLEMFLAHPRQVLTR 190 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 QI A++G FD N ++ ++ LR+K V + R +GY + Sbjct: 191 EQILKAVWG-FDFEPTSNSLDVYVMYLRRKTEAGGEPRLVHTVRGVGYVL 239 >gi|295132835|ref|YP_003583511.1| two-component system response regulator [Zunongwangia profunda SM-A87] gi|294980850|gb|ADF51315.1| two-component system response regulator [Zunongwangia profunda SM-A87] Length = 237 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 42/225 (18%), Positives = 98/225 (43%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D A V ++G + + + + S+ + D+ ++ L L Sbjct: 8 ILLVEDDAKVCAFINKGLTEEGFEVSIALNGKEGYQMASANKFDLLILDIML--PEMNGL 65 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAI 115 E+ + +R + P++ ++ S + +SG DD + KP E++AR + Sbjct: 66 EICKAVREENTHVPILFLTALGSSENIAMGLNSGADDYLAKPFKFIELIARVKSLLRRSR 125 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + +N I+V + G+ L E ++L + G+ +++T++ Sbjct: 126 NFNSNIPDNSYRFSDIKVNDSSKTVTRNGKKIALTSTEYKLLLAFLKAPGRVISRTELLE 185 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G+ + + NVV+ +++ LRKKL + + + +GY + Sbjct: 186 NVWGV-NYDIGTNVVDVYVNYLRKKLEKENNDRLIHTVIGMGYVL 229 >gi|269976505|ref|ZP_06183490.1| sensory transduction protein regX3 [Mobiluncus mulieris 28-1] gi|269935306|gb|EEZ91855.1| sensory transduction protein regX3 [Mobiluncus mulieris 28-1] Length = 229 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 53/228 (23%), Positives = 93/228 (40%), Gaps = 14/228 (6%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 M ++D ++D + G G G + + R ++ ++ L G Sbjct: 1 MIYFVEDDRNIRDLVVYTLGSTGFEAFGCEDDKAFRAEMAKTRPELVLLDIML--PGTDG 58 Query: 61 LELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 +++ R ++A +P+I ++ + + D G DD V KP E+++RV A+ R Sbjct: 59 IQILRRLKADRSTADIPIIMVTARGAEFEKVKSLDLGADDYVTKPFGMMELVSRVRAVLR 118 Query: 118 RLKVSNNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 R S + I V GE L +E ++LE LM G ++ Sbjct: 119 RSSRSAQDSVEEEILTLGSISLNLSRHAVMVNGETVTLTLKEYQLLEELMTQPGFIFSRD 178 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 Q+ +I+G + E V+ HI LRKKL + + R +GY Sbjct: 179 QLLDSIWG-YSFHGETRTVDVHIRTLRKKLGE--AAKYIKTVRGVGYK 223 >gi|229020274|ref|ZP_04177043.1| Two-component response regulator vanRB [Bacillus cereus AH1273] gi|229026498|ref|ZP_04182853.1| Two-component response regulator vanRB [Bacillus cereus AH1272] gi|228734806|gb|EEL85446.1| Two-component response regulator vanRB [Bacillus cereus AH1272] gi|228741027|gb|EEL91256.1| Two-component response regulator vanRB [Bacillus cereus AH1273] Length = 216 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 45/221 (20%), Positives = 97/221 (43%), Gaps = 11/221 (4%) Query: 5 IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64 I+D +++ +++ + L D+ ++ L + Sbjct: 2 IEDNPDIQELIREFLTAQNFTVDVVGAGTEGILLFQKNSYDLVLLDVML--PDIDGYSIC 59 Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYRRLK 120 +I+R S VP+I ++ + ++ + F+ GVDD + KP H+ + RV + Sbjct: 60 KIMRGQSDVPIIMLTGLHNEESEIKGFELGVDDYITKPFHYTVFIKRVEAVLRRTTTKET 119 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + + + S V G L +E I+ L+ NRGK ++++ + + ++G Sbjct: 120 ETATILQFHELMLNSTAYAAYVHGNQIELTTKEFEIIYTLLQNRGKVLSRSDLLNKVWG- 178 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ + V+++HI LRKKL G + + + +GY I+ Sbjct: 179 YEHYGDVRVIDTHIKNLRKKL----GIPYIKTVKGIGYKIE 215 >gi|168184842|ref|ZP_02619506.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|226947583|ref|YP_002802674.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] gi|237793672|ref|YP_002861224.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] gi|182672112|gb|EDT84073.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|226841854|gb|ACO84520.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] gi|229261533|gb|ACQ52566.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] Length = 228 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 32/224 (14%), Positives = 84/224 (37%), Gaps = 9/224 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + ++ + + + E + +V ++ L G L Sbjct: 4 ILIVEDESSIRGFVKVNLKMNNFDVIEAETGEEGIEKARKHKPEVVVLDIML--PGVDGL 61 Query: 62 ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH----REILARVAAIY 116 E+ + + + + +I ++ + + G DD + KP + I A + + Sbjct: 62 EVCKTLRQEFPNMGIIMLTAKSQDTDKVSGLEYGADDYIIKPFNPLELTLRIKAILRRVN 121 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + +N GP ++ + E + E +++ + N GK + ++ Sbjct: 122 AVKESDDNIITGGPFKIDLYSKKIYKNEEEIDITPTEYLLMKIFIENPGKAFNRDELLDL 181 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYS 219 ++G +D + +V+ +I +LR K+ + + GY Sbjct: 182 VWG-YDFMGDSKIVDVNIRRLRSKIEETPSEPKFIKTVWGTGYR 224 >gi|229000557|ref|ZP_04160100.1| Two-component response regulator vanRB [Bacillus mycoides Rock3-17] gi|229003857|ref|ZP_04161665.1| Two-component response regulator vanRB [Bacillus mycoides Rock1-4] gi|228757365|gb|EEM06602.1| Two-component response regulator vanRB [Bacillus mycoides Rock1-4] gi|228759200|gb|EEM08203.1| Two-component response regulator vanRB [Bacillus mycoides Rock3-17] Length = 228 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 44/223 (19%), Positives = 93/223 (41%), Gaps = 9/223 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D +++ ++ + + D+ ++ Sbjct: 13 ILVVEDDQEIQELIKQFLMTQQYAVTVASDGLEGMKQFNKQSFDLILLDVM--MPNLNGF 70 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119 E+ ++IR+ S +P+I ++ Q + FD G+DD + KP ++ RV A Sbjct: 71 EVAKMIRSQSNIPIIMLTALEEEQDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSYD 130 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + N I V D + PL +E IL+ L+ N+ K + + I ++G Sbjct: 131 QSTENHLFFKEIHVDCDAYKVYINELEIPLTAKEFEILQLLLQNKKKVITRESIVEKVWG 190 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 ++ E ++++HI +RKKL + + + +GY ID Sbjct: 191 -YEYHGETRMIDTHIKNIRKKLD----ISYIKTVKGIGYKIDE 228 >gi|229161432|ref|ZP_04289413.1| Two-component response regulator [Bacillus cereus R309803] gi|228621969|gb|EEK78814.1| Two-component response regulator [Bacillus cereus R309803] Length = 228 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 50/227 (22%), Positives = 93/227 (40%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ ++G+ + L R D+ ++ + Sbjct: 5 ILIVDDDKEIRNLISVYLENEGLKTQKAEDAIEALELLEEKRFDLIILDVM--MPNMDGI 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E IR +P+I +S + SG DD ++KP + E++ARV + RR K Sbjct: 63 EACMKIREERNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 122 Query: 122 SNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N + V +D R ++G L +E ILE L N+G ++ +I+ Sbjct: 123 YNTNTDNDKSILEIGDLTVNTDTRQVWIRGTEVRLTPKEFDILELLARNKGIVLSVAKIY 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220 A++ +N V HI+K+R K+ + + +GY I Sbjct: 183 EAVWKEV-FYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGYKI 228 >gi|164520386|gb|ABY60248.1| PhoP [Listeria monocytogenes] gi|164520390|gb|ABY60250.1| PhoP [Listeria monocytogenes] gi|164520396|gb|ABY60253.1| PhoP [Listeria monocytogenes] gi|164520404|gb|ABY60257.1| PhoP [Listeria monocytogenes] gi|164520424|gb|ABY60267.1| PhoP [Listeria monocytogenes] gi|164520428|gb|ABY60269.1| PhoP [Listeria monocytogenes] Length = 233 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 47/232 (20%), Positives = 95/232 (40%), Gaps = 16/232 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD A + G + L S + D+ ++ L +E Sbjct: 2 LVVDDEASIVTLLQFNIEKAGFEVVTAEDGRTGYELALSEKPDLIVLDLML--PEMDGIE 59 Query: 63 LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + +R VP++ ++ + + G DD + KP RE++AR+ AI RR + Sbjct: 60 VTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTEG 119 Query: 122 SNNRAETGPIR-----------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 E + D + +Q ++ L +E +L +L +RGK ++ Sbjct: 120 KAEIIEELTEDVEAAILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFSR 179 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 Q+ ++ +D E +V+ H+S LR K+ + + + R GY ++ Sbjct: 180 DQLLDTVW-NYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKME 230 >gi|15887773|ref|NP_353454.1| two component response regulator [Agrobacterium tumefaciens str. C58] gi|325291858|ref|YP_004277722.1| Phosphate regulon transcriptional regulatory protein phoB [Agrobacterium sp. H13-3] gi|15155345|gb|AAK86239.1| two component response regulator [Agrobacterium tumefaciens str. C58] gi|325059711|gb|ADY63402.1| Phosphate regulon transcriptional regulatory protein phoB [Agrobacterium sp. H13-3] Length = 227 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 51/225 (22%), Positives = 98/225 (43%), Gaps = 8/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++D + +G ++ + E D+ ++ L G + Sbjct: 5 IAVVEDEEALSVLLRYNLEAEGYDVDTIPRGDEAEIRLQERIPDLLILDWML--PGVSGI 62 Query: 62 ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 EL R +R + P+I ++ + +G DD V KP E++ARV A+ RR Sbjct: 63 ELCRRLRMRPETERLPIIMLTARGEESERVRGLATGADDYVVKPFSTPELMARVKAMLRR 122 Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + ++ + G I + + + L E R+LE+LM + G+ +++Q+ Sbjct: 123 ARPEVLSSVLKCGDIELDRETHRVHRKSREVRLGPTEFRLLEFLMTSPGRVFSRSQLLDG 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G D V+E V+ H+ +LRK L D + + R GYS++ Sbjct: 183 VWG-HDIYVDERTVDVHVGRLRKALNFSHMQDVIRTVRGAGYSME 226 >gi|119716281|ref|YP_923246.1| response regulator receiver [Nocardioides sp. JS614] gi|119536942|gb|ABL81559.1| response regulator receiver [Nocardioides sp. JS614] Length = 250 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 47/234 (20%), Positives = 89/234 (38%), Gaps = 18/234 (7%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D ++ + G + S + D+ ++ L G +E Sbjct: 17 LVVEDDEDIRALIVYTLETQGFEVFAVGSGLEGVAAVRDRQPDLITLDLGL--PGIDGIE 74 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 R IR S ++ I+ L ++G DD + KP RE+ ARV A++RR + Sbjct: 75 ACRRIREISDAYVVMITARDDEIDRLLGLETGADDFIAKPFSARELKARVNAMFRRPRTG 134 Query: 123 NNRAETGPIRVFSDG-------------RDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 R G+ L R E +L LM + + Sbjct: 135 GGAQRPDAPAEDPHELLVHGPLRVDVEGRRAFRDGQELVLTRTEFDLLTELMRAPSRVWS 194 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKL--RNKLGFDPVDSKRFLGYSID 221 + + +++G D A + ++VE H+ LR+KL + + R +GY ++ Sbjct: 195 REALLRSVWGT-DWASDTHLVEVHVGNLRRKLAAGTDGSTRFIRTVRGVGYRME 247 >gi|330831636|ref|YP_004394588.1| winged helix family two component transcriptional regulator [Aeromonas veronii B565] gi|328806772|gb|AEB51971.1| Two component transcriptional regulator, winged helix family [Aeromonas veronii B565] Length = 240 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 45/229 (19%), Positives = 81/229 (35%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ G + + D+ ++ GE Sbjct: 7 LLIVDDDQEIRELLNEYLTRAGFQVLTAAEGNEMRQQLAQHSPDLIILDIM--MPGEDGF 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L + IR SQVP+I ++ + + G DD + KP RE+ AR+ A+ RR + Sbjct: 65 TLCQQIRRDSQVPIIMLTAASDEADRVIGLELGADDYIAKPFSPRELQARIKALLRRAEF 124 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF---------PLPRRERRILEYLMANRGKRVAKTQ 172 E P R L + +L + G + + Sbjct: 125 RQPEKEKEPSRRLRFAEWTLDTLSHQLTHDDGSLLDLSGSDAMLLGMFLQQPGVVLDRDT 184 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 I A G + E ++ IS+LR+KL + + + R GY + Sbjct: 185 ISDATRGR-ESLPMERGIDVQISRLRQKLGDNGKSPRIIKTIRGSGYML 232 >gi|325519053|gb|EGC98554.1| two component heavy metal response transcriptional regulator [Burkholderia sp. TJI49] Length = 221 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 44/219 (20%), Positives = 87/219 (39%), Gaps = 4/219 (1%) Query: 4 LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63 +++D + G S++ L DV ++ L + Sbjct: 1 IVEDEPKTGAYLKKGLEESGFSVDLAKDGAEGLMLAQEENYDVIVLDVML--PVLDGWGV 58 Query: 64 PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLKVS 122 + +R P++ ++ +Q + + G DD + KP E+LAR+ R Sbjct: 59 LKRLRDTHTTPVLFLTARDDVQDRVHGLELGADDYLVKPFAFVELLARIRTLARRGPPRE 118 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 R G + + R + L RE +L+ L G+ +++TQI S ++ + + Sbjct: 119 TERLVVGDLEIDVVRRRVKRGTVRIDLTPREFSLLQLLARRHGEVLSRTQIASYVWDM-N 177 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + NVVE I +LR K+ + + + R +GY ++ Sbjct: 178 FDSDTNVVEVAIRRLRAKVDDAFPVKLIHTVRGVGYVLE 216 >gi|323704591|ref|ZP_08116169.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium xylanolyticum LX-11] gi|323536053|gb|EGB25826.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium xylanolyticum LX-11] Length = 222 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 50/220 (22%), Positives = 98/220 (44%), Gaps = 7/220 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++I+D ++D + + + D+ ++ L Sbjct: 5 LVIEDEEGMRDILKTYLEKNNFDALFAEDGSTGINMFKNNSFDIVLLDVML--PDMSGWN 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI--YRRLK 120 + + IR S++P++ I+ L F+ G DD V KP RE++AR+ AI + Sbjct: 63 VLKTIRESSKIPVMMITARSEEYDRLLGFELGADDYVVKPFSPREVIARIKAILSRSKWA 122 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 S+N I + +D R +V G+ L +E +L L N GK +++ + + ++G Sbjct: 123 ESDNSISFSGITIDTDSRVVKVDGKKIDLTPKEFDLLSLLAQNMGKALSREKCLNIVWG- 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ + V++HI +LR+KL +K D + + GY + Sbjct: 182 YEFFGDLRTVDTHIKQLREKLGDK--RDIIKTVWGYGYKL 219 >gi|164520364|gb|ABY60237.1| PhoP [Listeria monocytogenes] gi|164520372|gb|ABY60241.1| PhoP [Listeria monocytogenes] gi|164520420|gb|ABY60265.1| PhoP [Listeria monocytogenes] gi|164520426|gb|ABY60268.1| PhoP [Listeria monocytogenes] gi|164520436|gb|ABY60273.1| PhoP [Listeria monocytogenes] gi|164520438|gb|ABY60274.1| PhoP [Listeria monocytogenes] gi|164520442|gb|ABY60276.1| PhoP [Listeria monocytogenes] Length = 233 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 47/232 (20%), Positives = 95/232 (40%), Gaps = 16/232 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD A + G + L S + D+ ++ L +E Sbjct: 2 LVVDDEASIVTLLQFNIEKAGFEVVTAEDGRTGYELALSEKPDLIVLDLML--PEMDGIE 59 Query: 63 LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + +R VP++ ++ + + G DD + KP RE++AR+ AI RR + Sbjct: 60 VTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTEG 119 Query: 122 SNNRAETGPIR-----------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 E + D + +Q ++ L +E +L +L +RGK ++ Sbjct: 120 KAEIIEELTEDVEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFSR 179 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 Q+ ++ +D E +V+ H+S LR K+ + + + R GY ++ Sbjct: 180 DQLLDTVW-NYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKME 230 >gi|73855984|gb|AAZ88691.1| putative 2-component transcriptional regulator [Shigella sonnei Ss046] Length = 280 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 50/219 (22%), Positives = 97/219 (44%), Gaps = 3/219 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D ++ + G ++ + +L + ++ L G Sbjct: 60 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIML--PGMDGW 117 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + +R Q P+I ++ S+ + DSG +D + KP E+LARV A R+ Sbjct: 118 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 177 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 N+ E +R+ S + L R+E ++L L + G+ + +T I S I+G+ Sbjct: 178 LNSTLEISGLRMDSVSQSVSRNNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 236 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + N V+ I +LR K+ + + + R +GYS Sbjct: 237 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 275 >gi|332520078|ref|ZP_08396542.1| response regulator receiver [Lacinutrix algicola 5H-3-7-4] gi|332044637|gb|EGI80831.1| response regulator receiver [Lacinutrix algicola 5H-3-7-4] Length = 227 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 42/223 (18%), Positives = 89/223 (39%), Gaps = 9/223 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 +L+DD + + +G + ++ + + ++ + G + Sbjct: 8 ILLVDDEPDILEIVGYNLSKEGYQVSTASNGVEGVKKAKKEKPHLIILDVMMPEMDGIEA 67 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E R + + ++ + + FD+G DD + KPI + +L++V A+ RRLK Sbjct: 68 CEQIRKVPELKNTIITFLTARGEDYSQVAGFDAGADDYITKPIKPKLLLSKVKALLRRLK 127 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFP---LPRRERRILEYLMANRGKRVAKTQIFSAI 177 A + + ++ LP++E +L L + GK + I I Sbjct: 128 AEEGNATIVKVGNLTINKEEYKIILDGKEILLPKKEFELLSLLASKPGKVFKRENILERI 187 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G + V ++ HI K+R K+ +K + + + +GY Sbjct: 188 WGN-EVVVGGRTIDVHIRKIRDKIGDKS----IKTIKGVGYKF 225 >gi|220915559|ref|YP_002490863.1| two component transcriptional regulator, winged helix family [Anaeromyxobacter dehalogenans 2CP-1] gi|219953413|gb|ACL63797.1| two component transcriptional regulator, winged helix family [Anaeromyxobacter dehalogenans 2CP-1] Length = 230 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 47/229 (20%), Positives = 95/229 (41%), Gaps = 11/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + G G +G ++ E L + + D+ ++ L L Sbjct: 5 ILVIEDDPSILRGLQLNLGMEGYTVRSATDGETGLQLARTEQPDLVVVDVML--PRMGGL 62 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R IR ++P++ +S + G DD + KP +E+LAR+ A+ RR + Sbjct: 63 EVIREIRKEDPELPILILSAKNQETDKVAGLQLGADDYLGKPFGLKELLARIDALLRRRR 122 Query: 121 VSNNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + IR D R V G L RE +L + + + + ++ Q+ Sbjct: 123 ARGEGVQPKAIRRVGGIELDLDARRALVDGRALELTSREFDLLAFFVTHPDRVYSREQLM 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDW 222 A++G V++ +++LR + + +++ R +GY + Sbjct: 183 EAVWGSR-YFGTARTVDNFVARLRAHIGDDAEQPRHLETVRGIGYRFNV 230 >gi|332160707|ref|YP_004297284.1| phosphate regulon transcriptional regulatory protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325664937|gb|ADZ41581.1| phosphate regulon transcriptional regulatory protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330862470|emb|CBX72627.1| phosphate regulon transcriptional regulatory protein phoB [Yersinia enterocolitica W22703] Length = 279 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 38/224 (16%), Positives = 91/224 (40%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A +++ + +G + S D+ ++ L G + Sbjct: 55 ILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRLSEPYPDLVLLDWML--PGGSGI 112 Query: 62 ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 + + ++ +P++ ++ + + + G DD + KP +E++AR+ A+ RR Sbjct: 113 QFIKHMKREVLTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRR 172 Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + E + + + + E ++L + M + + ++ Q+ + Sbjct: 173 ISPMAVEEVIEMQGLSLDPSSHRVMANDQALDMGPTEFKLLHFFMTHPERVYSREQLLNY 232 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + VE+ V+ HI +LRK L V + R GY Sbjct: 233 VWGT-NVYVEDRTVDVHIRRLRKALEIDGHDRMVQTVRGTGYRF 275 >gi|301048805|ref|ZP_07195803.1| response regulator receiver domain protein [Escherichia coli MS 185-1] gi|300299390|gb|EFJ55775.1| response regulator receiver domain protein [Escherichia coli MS 185-1] Length = 240 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 44/224 (19%), Positives = 89/224 (39%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + I + + + D+ ++ L G L Sbjct: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLML--PGTDGL 70 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 L R IR S +P++ ++ L + G DD + KP RE++ARV + Sbjct: 71 TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + P+ + +G++ L E R+L+ L GK ++ Q+ + +Y Sbjct: 131 QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREQLLNHLY 190 Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + V + ++SHI LR+KL + + + +GY + Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYSVGYRWE 233 >gi|227508143|ref|ZP_03938192.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227511166|ref|ZP_03941215.1| response regulator [Lactobacillus buchneri ATCC 11577] gi|227523372|ref|ZP_03953421.1| response regulator [Lactobacillus hilgardii ATCC 8290] gi|227085648|gb|EEI20960.1| response regulator [Lactobacillus buchneri ATCC 11577] gi|227089478|gb|EEI24790.1| response regulator [Lactobacillus hilgardii ATCC 8290] gi|227192372|gb|EEI72439.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 238 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 48/229 (20%), Positives = 93/229 (40%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + E + D+ ++ L L Sbjct: 5 ILVVDDEKPIVDIEKFNLTKEGYEVFVAYDGEEALKQVNEVDPDLIILDLML--PKIDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R P+I ++ S + + G DD V KP +RE++ARV A RR Sbjct: 63 EVAREVRKTKDTPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQGT 122 Query: 122 SNNRAETGPIRVF---------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 S+ + G + +GE L RE +L YL + G+ + + Sbjct: 123 SSGNSSEGDENKDIKIGDLVIHPEAYSVSKRGENIELTHREFELLHYLAQHIGQVMTREH 182 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + ++G +D + V+ + +LR+K+ + + ++R +GY + Sbjct: 183 LLQTVWG-YDYFGDVRTVDVTVRRLREKVEDSPSHPTWLVTRRGVGYYL 230 >gi|167034724|ref|YP_001669955.1| two component transcriptional regulator [Pseudomonas putida GB-1] gi|166861212|gb|ABY99619.1| two component transcriptional regulator, winged helix family [Pseudomonas putida GB-1] Length = 231 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 50/223 (22%), Positives = 94/223 (42%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD ++ G + + E + + D+ ++ L Sbjct: 7 LLVIDDEPQIRKFLRISLASQGYKVLEAATGEEGLAQAALGKPDLVVLDLGL--PDMDGQ 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R +R S VP++ +S S +D D G +D V KP +E LARV A+ R++ Sbjct: 65 QVLRELREWSAVPVMVLSVRASEVQKVDALDGGANDYVTKPFGIQEFLARVRALLRQVPQ 124 Query: 122 ---SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 S A GP+ V R + G L R+E +L L + G+ + + Q+ I+ Sbjct: 125 AGGSEVAASFGPLTVDFAFRRVTIDGVEVALTRKEYALLALLAGHPGRVITQQQLLKDIW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 G + + + + LR+KL + + ++ +GY + Sbjct: 185 GPTHVE-DTHYLRIVVGHLRQKLGDDPTAPRFIITEAGVGYRL 226 >gi|271969946|ref|YP_003344142.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270513121|gb|ACZ91399.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 229 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 52/222 (23%), Positives = 90/222 (40%), Gaps = 7/222 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++ +D + +G S+ + D+ ++ L+ Sbjct: 6 LVAEDDVKQAELVRRYLEREGHSVLVVHDGRSAIDEARRREPDLVVLDVM--MPKADGLD 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R+IRA S VP++ ++ + L D G DD V KP RE++ARV + RR++ S Sbjct: 64 VCRVIRAESDVPVLMLTARATEDDLLVGLDLGADDYVTKPYSPRELMARVRTLLRRVRRS 123 Query: 123 NNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + ET + S V G E RILE L A + + Q+ ++G Sbjct: 124 RDPEETLKVGDLLVDSARHRVSVAGSPVDCTPAEFRILETLAAQPERVFTRKQLLEEVHG 183 Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 FD + V+ H+ LRKK+ + + +GY + Sbjct: 184 -FDRFITRRTVDVHMLNLRKKIEPDPRRPTRILTVYGVGYKL 224 >gi|256854939|ref|ZP_05560300.1| response regulator [Enterococcus faecalis T8] gi|256709452|gb|EEU24499.1| response regulator [Enterococcus faecalis T8] gi|315030108|gb|EFT42040.1| putative regulatory protein VanR [Enterococcus faecalis TX4000] Length = 229 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 44/227 (19%), Positives = 91/227 (40%), Gaps = 9/227 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD + + ++G + + D+ + ++ + Sbjct: 3 ILVADDDKEIVELLSIYIHNEGYEVVKAYDGKEALSKL-HTTPDIDLLILDIMMPIMDGM 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + +R SQ+P+I ++ + + +G DD V KP + E++ARV +I RR ++ Sbjct: 62 EVVKELRKESQIPIIMLTAKTTDMDKIKGLVAGADDYVTKPFNPLEVMARVKSILRRSRM 121 Query: 122 SNNRAETGP------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + E + ++G+ L E IL L ++ + + +IF Sbjct: 122 QLTKEEPDELEVGPLMINKDSHEVKTIEGKEIQLTALEFGILYLLASHPNRVFSADEIFE 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221 ++ + V V H+S LR K+ G + + +GY ID Sbjct: 182 RVW-QQESIVSAKTVMVHVSHLRDKIEEATGGEKVIQTVWGVGYKID 227 >gi|47567988|ref|ZP_00238694.1| two-component response regulator [Bacillus cereus G9241] gi|47555291|gb|EAL13636.1| two-component response regulator [Bacillus cereus G9241] Length = 229 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 50/229 (21%), Positives = 89/229 (38%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++++ F + + + + D+ ++ L Sbjct: 5 ILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIML--PELDGW 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR-------EILARVAA 114 + R IR S+VP+I ++ TL F+ G DD V KP +L Sbjct: 63 SVCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKV 122 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + L+ ++ I V R + L E IL Y M N+G + + Q+ Sbjct: 123 TKQLLENEDDTLSIHGIHVHFPSRTVTIDRTDINLTHTEFEILAYFMKNQGIVLTREQLI 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 S I+G ++ A ++ V SHI LR KL K + + GY + N Sbjct: 183 SRIWG-YEFAGDDRTVNSHIRNLRNKLGEK--AKYITTVVRTGYKFEGN 228 >gi|291545612|emb|CBL18720.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus sp. SR1/5] Length = 230 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 40/228 (17%), Positives = 87/228 (38%), Gaps = 10/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD + + + + N+ + + ++ G Sbjct: 4 ILIIDDDRELCALIKRSVQAENIEADFCNTGKEGLQKLREQEYQLVVLDVM--MPGMDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL------ARVAAI 115 E IR + +P++ + + + +G DD + KP E++ R Sbjct: 62 ETLEEIRKENSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRRYTR 121 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + + + +++ + R F LP +E +L Y ++GK + K QI+ Sbjct: 122 FNHQAGAVQKLDFDGLQIDLENRSVTTSNGTFELPPKEFDLLLYCAKHQGKILTKQQIYE 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 ++G + N + + IS+LRKKL N + + + +GY + Sbjct: 182 EVWGEEYFYDDSN-IMAIISRLRKKLEVNPSSPKYIQTVKGIGYRFNK 228 >gi|282861156|ref|ZP_06270221.1| two component transcriptional regulator, winged helix family [Streptomyces sp. ACTE] gi|282563814|gb|EFB69351.1| two component transcriptional regulator, winged helix family [Streptomyces sp. ACTE] Length = 220 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 45/223 (20%), Positives = 92/223 (41%), Gaps = 10/223 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G +++ + L D+ ++ L G Sbjct: 3 LLIVEDEKRLAVSLAKGLTAEGFAVDVVHDGLEGLHLAGQGGYDLVVLDIML--PGMNGY 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119 + +RA P++ ++ + D+G DD + KP + ++AR+ A+ RR Sbjct: 61 RVCAALRAAGHDVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARIRALLRRRG 120 Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++ G +R+ + R + L +E +LE L G+ V+K I ++ Sbjct: 121 GGSASPVLTAGTLRLDTAARRVHRGEDEVTLTAKEFAVLEQLAVRAGEVVSKADILEHVW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 F + N+VE +IS LR+KL + + R GY ++ Sbjct: 181 D-FAYDGDPNIVEVYISTLRRKLGAAA----IRTVRGAGYRLE 218 >gi|78779101|ref|YP_397213.1| two component transcriptional regulator [Prochlorococcus marinus str. MIT 9312] gi|78712600|gb|ABB49777.1| two component transcriptional regulator, winged helix family [Prochlorococcus marinus str. MIT 9312] Length = 242 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 45/229 (19%), Positives = 86/229 (37%), Gaps = 11/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA-REDVSAIEAFLIGKGEKV 60 +L++D ++ +G + F ++ ++DV I L+ G Sbjct: 14 ILLVEDDKSIRLTVSETLISEGFKVSSFKDGLSALDFINNDIKKDVDLIILDLMLPGLNG 73 Query: 61 LELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARV 112 LEL R I P++ +S + + + G DD + KP R ++ R Sbjct: 74 LELCRKIRNDEDYTPILILSAKDNESDRVLGLEVGADDYLTKPFGLNELIARSRALIRRS 133 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + ++ S E I++F + L +E ++LE M N + ++ Sbjct: 134 KRNKKYIENSKTVLEFNHIKMFLEECRVTSFDREITLSPKEFKLLELFMKNPKRVWSRDL 193 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220 I I+ D + V+ H+ LR+KL + + + R GY Sbjct: 194 ILEKIW-EIDFIGDTKTVDVHVRWLREKLEEDPSAPKFLKTVRGFGYKF 241 >gi|53802727|ref|YP_115492.1| DNA-binding response regulator PhoB [Methylococcus capsulatus str. Bath] gi|53756488|gb|AAU90779.1| DNA-binding response regulator PhoB [Methylococcus capsulatus str. Bath] Length = 232 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 46/222 (20%), Positives = 92/222 (41%), Gaps = 5/222 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVL 61 ++++D +++ + +++ ++ D+ ++ L G G + Sbjct: 7 LVVEDEEAIREMLTLVLEQADFAVQTAGDVQQALNRMDEQEPDLILLDWMLPGVSGVEWA 66 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 + + +PLI ++ + + D G DD V KP RE++AR+ R Sbjct: 67 RRLKKDENYGDIPLILVTARGEEEDKIRGLDVGADDYVTKPFSPRELIARIRAVLRRSNR 126 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + R E G I + +D + E L E R++E+ + + K ++ Q+ ++ Sbjct: 127 QSKLDGRIEIGGILLDTDEHRLSIDDESVNLSPTEYRLMEFFLTHPSKVYSRAQLLDQVW 186 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G +EE V+ HI +LRK L D + + R GY Sbjct: 187 GRSAY-IEERTVDVHIRRLRKILSEHDREDMIQTVRGFGYRF 227 >gi|284047511|ref|YP_003397850.1| two component transcriptional regulator, winged helix family [Acidaminococcus fermentans DSM 20731] gi|283951732|gb|ADB46535.1| two component transcriptional regulator, winged helix family [Acidaminococcus fermentans DSM 20731] Length = 225 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 52/225 (23%), Positives = 92/225 (40%), Gaps = 8/225 (3%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEK 59 + ++D +++ E F + + D+ ++ L G G Sbjct: 3 LIYCVEDDENIRELVRYALCSQKFQAEAFPDGPSFWKALEAKQPDLVLLDIMLPGESGLD 62 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAI 115 +L+ R +A S +P+I ++ S + D+G DD ++KP + A + Sbjct: 63 ILKKLRDSQATSGLPVIMLTARTSEYDVVTGLDAGADDYISKPFGIMELLSRVKAVLRRG 122 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 R+ N G I + QG+ L +E +L YLMAN G +++ QI Sbjct: 123 GRQKPQDRNLLVCGDITLDLKKHRVTTQGQPCELTVKEFDLLHYLMANAGIVLSRDQIME 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 A++ F A E ++ HI LR+KL + + R +GY I Sbjct: 183 AVWS-FSYAGESRTIDMHIRSLRQKLGEAG--RIIQTVRGVGYRI 224 >gi|84496068|ref|ZP_00994922.1| putative two component response regulator [Janibacter sp. HTCC2649] gi|84382836|gb|EAP98717.1| putative two component response regulator [Janibacter sp. HTCC2649] Length = 247 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 42/225 (18%), Positives = 84/225 (37%), Gaps = 10/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + +G + + DV ++ L G+ +E Sbjct: 22 LVVEDDLPMATLIGNYLEHEGYEVRLSHDGVAAVQAARGFDPDVVVLDLGL--PGQDGIE 79 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAIY 116 + R +R S ++ ++ TL G DD + KP RE+ + R Sbjct: 80 VCRQLRTFSDAYVVMLTARADELDTLIGLSVGADDYMTKPFSPRELVARLRAMQRRPRPI 139 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 G + + GRD + + L R E +L L G ++ Q+ Sbjct: 140 DGANHGPTLRRFGTLAIDPIGRDVWLDDQPVSLTRTEFDVLAVLSERPGMAFSRRQLIDQ 199 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220 ++G ++++V+ HI LR+KL + + + R +GY + Sbjct: 200 VWGGT-WVGDDHLVDVHIGHLRRKLGDDAGAARFIRTVRGIGYRM 243 >gi|323528722|ref|YP_004230874.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia sp. CCGE1001] gi|323385724|gb|ADX57814.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia sp. CCGE1001] Length = 225 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 47/221 (21%), Positives = 93/221 (42%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + G S++ N L DV ++ L Sbjct: 3 ILVIEDEPKTGAYLKKGLEESGYSVDLANDGADGLLLAQEQDYDVIVLDVML--PTMDGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120 + +++RA P++ ++ + + + G DD + KP E+LARV R Sbjct: 61 AVLKVLRATHTTPVLFLTARDDVNDRVRGLELGGDDYLVKPFAFVELLARVRTLARRGPP 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + G + + + R + L RE +L+ L+ +G+ +++TQI S ++ + Sbjct: 121 RESELLAIGDLEMDINRRRVKRGATRIDLTPREFSLLQLLLRRQGEVLSRTQIASYVWDM 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + NVVE I +LR K+ + + + R +GY I+ Sbjct: 181 -NFDSDTNVVEVAIRRLRAKIDDAFPVKLIQTVRGVGYVIE 220 >gi|94495598|ref|ZP_01302178.1| two component transcriptional regulator, winged helix family protein [Sphingomonas sp. SKA58] gi|94424986|gb|EAT10007.1| two component transcriptional regulator, winged helix family protein [Sphingomonas sp. SKA58] Length = 240 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 45/229 (19%), Positives = 90/229 (39%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L+DD +++ +G + +S ++ D+ ++ GE L Sbjct: 8 LLLVDDERSIREPLAQYLSRNGFRVTAVDSAAEARVRLNANAIDLVILDIM--MPGEDGL 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R IR S++P+I ++ + + G DD V KP RE++AR+ I+RR+ Sbjct: 66 SLCRHIRETSEIPVILLTAKSEETDRIVGLEMGADDYVLKPFSPRELVARIKVIFRRVAS 125 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF---------PLPRRERRILEYLMANRGKRVAKTQ 172 R ++ E PL E ++ + +++ Q Sbjct: 126 GGQRVTAPDGATYAFAGWLLKSQERTLIDSEGVSLPLSTAEYNLMLAFATRPNQVLSRDQ 185 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + G A + +++ IS+LRKK+ + + + GY++ Sbjct: 186 LLDITQGREANAFD-RAIDNQISRLRKKIEPDPKNPTLIKTVWGGGYTL 233 >gi|148550428|ref|YP_001270530.1| two component transcriptional regulator [Pseudomonas putida F1] gi|167036353|ref|YP_001671584.1| two component transcriptional regulator [Pseudomonas putida GB-1] gi|325275137|ref|ZP_08141111.1| winged helix family two component transcriptional regulator [Pseudomonas sp. TJI-51] gi|148514486|gb|ABQ81346.1| two component transcriptional regulator, winged helix family [Pseudomonas putida F1] gi|166862841|gb|ABZ01249.1| two component transcriptional regulator, winged helix family [Pseudomonas putida GB-1] gi|313501293|gb|ADR62659.1| PhoB [Pseudomonas putida BIRD-1] gi|324099745|gb|EGB97617.1| winged helix family two component transcriptional regulator [Pseudomonas sp. TJI-51] Length = 229 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 46/224 (20%), Positives = 92/224 (41%), Gaps = 9/224 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A +++ G + + + + D+ ++ L G + Sbjct: 6 ILIVDDEAPIREMIAVALEMAGYDCLEAENSQQAHAIIVDRKPDLILLDWML--PGTSGI 63 Query: 62 ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IY 116 EL R ++ +P+I ++ + + G DD + KP RE++AR+ A Sbjct: 64 ELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 S E G + + + G+ + E R+L++ M ++ + + Q+ Sbjct: 124 TGPSDSEAPIEVGGLLLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAYTRGQLLDQ 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + VEE V+ HI +LRK L + V + R GY Sbjct: 184 VWG-GNVYVEERTVDVHIRRLRKALGEAYE-NLVQTVRGTGYRF 225 >gi|310824267|ref|YP_003956625.1| winged helix family two component transcriptional regulator [Stigmatella aurantiaca DW4/3-1] gi|309397339|gb|ADO74798.1| Two component transcriptional regulator, winged helix family [Stigmatella aurantiaca DW4/3-1] Length = 241 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 47/223 (21%), Positives = 86/223 (38%), Gaps = 8/223 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L++D + + G+ + + DV ++ L G LE Sbjct: 16 LLVEDDERLARLTSRYLQEHGLIVTIARTGPEGLAEAGRHAYDVLLLDLML--PGRDGLE 73 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYRR 118 + R +R S VP+I ++ + ++G DD + KP R I A+V Sbjct: 74 VCRELRTRSDVPIIMVTARGEEIDRVLGLETGADDYLPKPYSSRELLARIRAQVRRARGN 133 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 S G +++ + G+ L E +L L G+ +++ Q+ I Sbjct: 134 AGPSLQPLNVGRLQMDPRSLTAVLNGKTLSLTSYEFNLLRVLAERAGRVLSREQLLDLIK 193 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 G DE V + ++ HI +LR+KL + + R GY + Sbjct: 194 GSADE-VFDRSIDVHIFRLRQKLEEDPRNPRMLKTVRGAGYLL 235 >gi|282854876|ref|ZP_06264210.1| response regulator receiver domain protein [Propionibacterium acnes J139] gi|282582022|gb|EFB87405.1| response regulator receiver domain protein [Propionibacterium acnes J139] gi|314924356|gb|EFS88187.1| response regulator receiver domain protein [Propionibacterium acnes HL001PA1] gi|314965881|gb|EFT09980.1| response regulator receiver domain protein [Propionibacterium acnes HL082PA2] gi|314981603|gb|EFT25696.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA3] gi|315092243|gb|EFT64219.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA4] gi|315094815|gb|EFT66791.1| response regulator receiver domain protein [Propionibacterium acnes HL060PA1] gi|315104709|gb|EFT76685.1| response regulator receiver domain protein [Propionibacterium acnes HL050PA2] gi|327328660|gb|EGE70420.1| DNA-binding response regulator TrcR [Propionibacterium acnes HL103PA1] Length = 232 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 45/230 (19%), Positives = 92/230 (40%), Gaps = 11/230 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V++ G ++ S + D ++ L Sbjct: 5 ILVVDDDRAVRESLARSLQYSGYEVDSVADGVEALAHLSGSHPDAVIMDVM--MPRLDGL 62 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E R++R++ P++ ++ ++ +D D+G DD + KP E+LAR+ A+ RR + Sbjct: 63 EATRMLRSNGNDVPILILTARDAVDDRVDGLDAGADDYMVKPFALDELLARLRALTRRSR 122 Query: 121 VSNNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 E + R+ L R E +L + N + + ++ + Sbjct: 123 PEPGPDEAPEQLSFADLTLDPATREVTRGNRRISLTRTEFALLTVFLQNPERVLERSWLL 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI-DWN 223 ++G FD N +E +I LR+K + + + R +GY + + N Sbjct: 183 HEVWG-FDFPTTANSLEVYIGYLRRKTEHDGEARLIHTVRGVGYVLREAN 231 >gi|169349708|ref|ZP_02866646.1| hypothetical protein CLOSPI_00446 [Clostridium spiroforme DSM 1552] gi|169293783|gb|EDS75916.1| hypothetical protein CLOSPI_00446 [Clostridium spiroforme DSM 1552] Length = 229 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 44/228 (19%), Positives = 85/228 (37%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D ++ + + + D++ ++ Sbjct: 5 ILVVDDEQSIADLIELYLQNENYHIFKYYCGKDALESLQKNHYDLAILDVM--MPDLDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L + IR H P+I ++ + ++ G DD + KP + E+ ARV RR Sbjct: 63 SLLKKIRKHYYFPVIMLTAKSNDLDKINGLTLGADDYLTKPFNPLELAARVKTQLRRYLR 122 Query: 122 SNNRAETGPIRVFS-------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N T + + L E IL YL + RG V ++F Sbjct: 123 YNQNPSTNQHIYDFNGLVINNHTHKCTLYDQPLNLTPIEFSILWYLCSKRGNVVTSEELF 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221 A++ N V +H+++LR+K+ N + + +GY+I+ Sbjct: 183 EAVWQEKYLD-NNNTVMAHVARLREKMHENARKPKFIKTVWGVGYTIE 229 >gi|306521881|ref|ZP_07408228.1| two-component sensor histidine kinase [Clostridium difficile QCD-32g58] Length = 620 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 38/227 (16%), Positives = 84/227 (37%), Gaps = 11/227 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD ++D + G ++ + + + ++ +E Sbjct: 6 LVVDDEKEIRDLIEIYLLNSGYNVIKAEDGKEALDILKKENIHLMILDIM--MPKMDGIE 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-------REILARVAAI 115 + R +R +P++ +S + +G DD + KP + + ++ R Sbjct: 64 VCRKVRESLNIPILMLSAKSEDMDKIQGIMTGADDYLTKPFNPLELTVRVKSLIRRAYYF 123 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + G + + + V G L RE IL L N+G+ + +IF Sbjct: 124 SGANNEDKDVIKVGVVIIDKEKHSVTVAGNEIILTSREFDILYLLANNKGRVYSTEEIFE 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 ++ N V H+S++R K+ G + + +GY I+ Sbjct: 184 KVWKEK-YYQSNNTVMVHMSRIRDKIEKYTDGEKIIHTVWGVGYKIE 229 >gi|187929100|ref|YP_001899587.1| winged helix family two component transcriptional regulator [Ralstonia pickettii 12J] gi|241663308|ref|YP_002981668.1| two component transcriptional regulator PhoB [Ralstonia pickettii 12D] gi|309782477|ref|ZP_07677201.1| phosphate regulon transcriptional regulatory protein PhoB [Ralstonia sp. 5_7_47FAA] gi|187725990|gb|ACD27155.1| two component transcriptional regulator, winged helix family [Ralstonia pickettii 12J] gi|240865335|gb|ACS62996.1| two component transcriptional regulator PhoB, winged helix family [Ralstonia pickettii 12D] gi|308918814|gb|EFP64487.1| phosphate regulon transcriptional regulatory protein PhoB [Ralstonia sp. 5_7_47FAA] Length = 237 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 50/231 (21%), Positives = 88/231 (38%), Gaps = 10/231 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++++D + + G + E L S D+ ++ L G G Sbjct: 5 ILVVEDEPAIAELIAVNLQHAGHYPIRAYNAEQALSLMSDVLPDLVLLDWMLPGKSGVMF 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R Q+P+I ++ Q + DSG DD V KP +E+LAR+ A+ RR Sbjct: 65 AKELRANERTRQIPIIMLTARSEEQDKIMGLDSGADDYVTKPFSPKELLARIKAVLRRRA 124 Query: 121 VSNNRAE--------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + L E R+L +LM + + +++Q Sbjct: 125 PQLTDDVVAINGLKLDPATHRVTATNVEAENPIKLDLGPTEFRLLHFLMTHPERVHSRSQ 184 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 + ++G VEE V+ HI +LR L + +++ R GY + N Sbjct: 185 LLDQVWGDH-VFVEERTVDVHIKRLRAALAPGGYSNMIETVRGSGYRLARN 234 >gi|116250319|ref|YP_766157.1| phosphate regulon two-component regulator transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] gi|241202937|ref|YP_002974033.1| PhoB family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|115254967|emb|CAK06041.1| putative phosphate regulon two-component regulator transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] gi|240856827|gb|ACS54494.1| two component transcriptional regulator PhoB, winged helix family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 227 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 47/223 (21%), Positives = 93/223 (41%), Gaps = 8/223 (3%) Query: 4 LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63 +++D + +G ++ + E D+ ++ L G +EL Sbjct: 7 VVEDEEALSVLLRYNLEAEGFEVDTILRGDEAEMRLQERTPDLLILDWML--PGVSGIEL 64 Query: 64 PRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118 R +R + P+I ++ + +G DD V KP E+ + R Sbjct: 65 CRRLRMRPETERLPIIMLTARGEESERVRGLSTGADDYVVKPFSTPELVARVKAMLRRAR 124 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 +V + + G I + + + L E R+LE+LM++ G+ +++Q+ ++ Sbjct: 125 PEVLSTVLKCGDIELDRETHRVHRKTREVRLGPTEFRLLEFLMSSPGRVFSRSQLLDGVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 G D V+E V+ H+ +LRK L D + + R GYS++ Sbjct: 185 G-HDIYVDERTVDVHVGRLRKALNFSNMQDVIRTVRGAGYSME 226 >gi|86356168|ref|YP_468060.1| phosphate regulon, two-component response regulator protein [Rhizobium etli CFN 42] gi|190890217|ref|YP_001976759.1| phosphate regulon, two-component response regulator protein [Rhizobium etli CIAT 652] gi|86280270|gb|ABC89333.1| phosphate regulon, two-component response regulator protein [Rhizobium etli CFN 42] gi|190695496|gb|ACE89581.1| phosphate regulon, two-component response regulator protein [Rhizobium etli CIAT 652] gi|327192727|gb|EGE59663.1| phosphate regulon, two-component response regulator protein [Rhizobium etli CNPAF512] Length = 227 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 47/223 (21%), Positives = 94/223 (42%), Gaps = 8/223 (3%) Query: 4 LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63 +++D + +G ++ + E D+ ++ L G +EL Sbjct: 7 VVEDEEALSVLLRYNLEAEGFEVDTILRGDEAEIRLQERTPDLLILDWML--PGVSGIEL 64 Query: 64 PRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118 R +R + P+I ++ + +G DD V KP E+ + R Sbjct: 65 CRRLRMRPETERLPIIMLTARGEESERVRGLSTGADDYVVKPFSTPELVARVKAMLRRAR 124 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 +V ++ + G I + + + L E R+LE+LM++ G+ +++Q+ ++ Sbjct: 125 PEVLSSVLKCGDIELDRETHRVHRKSREVRLGPTEFRLLEFLMSSPGRVFSRSQLLDGVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 G D V+E V+ H+ +LRK L D + + R GYS++ Sbjct: 185 G-HDIYVDERTVDVHVGRLRKALNFSNMQDVIRTVRGAGYSME 226 >gi|30022879|ref|NP_834510.1| two-component response regulator [Bacillus cereus ATCC 14579] gi|229130093|ref|ZP_04259054.1| Two-component response regulator [Bacillus cereus BDRD-Cer4] gi|29898438|gb|AAP11711.1| Two-component response regulator [Bacillus cereus ATCC 14579] gi|228653308|gb|EEL09185.1| Two-component response regulator [Bacillus cereus BDRD-Cer4] Length = 229 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 51/229 (22%), Positives = 89/229 (38%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++++ F + + + + D+ ++ L Sbjct: 5 ILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIML--PELDGW 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR-------EILARVAA 114 + R IR S+VP+I ++ TL F+ G DD V KP +L Sbjct: 63 SVCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKV 122 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + L+ ++ I V R V L E IL Y M N+G + + Q+ Sbjct: 123 TKQLLENEDDTLSIHGIHVHFPSRTVTVDRTDINLTHTEFEILAYFMKNQGIVLTREQLI 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 S I+G ++ A ++ V SHI LR KL K + + GY + N Sbjct: 183 SRIWG-YEFAGDDRTVNSHIRNLRNKLGEK--AKYITTVVRTGYKFEGN 228 >gi|164520430|gb|ABY60270.1| PhoP [Listeria monocytogenes] Length = 233 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 47/232 (20%), Positives = 95/232 (40%), Gaps = 16/232 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD A + G + L S + D+ ++ L +E Sbjct: 2 LVVDDEASIVTLLQFNIEKAGFDVVTAEDGRSGYELALSEKPDLIVLDLML--PEMDGIE 59 Query: 63 LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + +R VP++ ++ + + G DD + KP RE++AR+ AI RR + Sbjct: 60 VTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTEG 119 Query: 122 SNNRAETGPIR-----------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 E + D + +Q ++ L +E +L +L +RGK ++ Sbjct: 120 KAEIIEEITEDSEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFSR 179 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 Q+ ++ +D E +V+ H+S LR K+ + + + R GY ++ Sbjct: 180 DQLLDTVW-NYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKME 230 >gi|51894424|ref|YP_077115.1| two-component response regulator, CheY-like [Symbiobacterium thermophilum IAM 14863] gi|51858113|dbj|BAD42271.1| two-component response regulator, CheY-like [Symbiobacterium thermophilum IAM 14863] Length = 232 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 44/221 (19%), Positives = 83/221 (37%), Gaps = 9/221 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD +++ + ++ A D+ + ++ + Sbjct: 10 LVVDDEPRMRELIRLYLAAE-CTVLEAGDGLTALRAVRDAGPDLVLL--DVMMPRLDGWQ 66 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + IR S VP+I ++ + + G DD + KP RE+ ARV A+ RR Sbjct: 67 TLQRIREESAVPVIMLTARGGVADRVQGLRMGADDYIAKPFDGRELAARVQAVLRRSAGQ 126 Query: 123 NNRAETGPIRVFSDGRDPE---VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + G PL +E +L L A+ G+ ++ ++ I+G Sbjct: 127 VEANVPIRRGSLTIRPAERTALYAGRPLPLTPKEFDLLALLAAHPGQVFSREKLLDRIWG 186 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D + V++HI LR KL G + + +GY Sbjct: 187 -PDFQGDARTVDAHIKNLRDKLGE--GAGLILTVWGVGYRF 224 >gi|302392661|ref|YP_003828481.1| two component transcriptional regulator, winged helix family [Acetohalobium arabaticum DSM 5501] gi|302204738|gb|ADL13416.1| two component transcriptional regulator, winged helix family [Acetohalobium arabaticum DSM 5501] Length = 227 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 51/221 (23%), Positives = 100/221 (45%), Gaps = 6/221 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++I+D + +G +E + E D+ ++ L G +E Sbjct: 7 LIIEDEEKIARFLELELEHEGYEVEAVYNGEEGLEAIIEGDFDLVLLDIML--PGLSGME 64 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +R S++P+I ++ + D G D + KP E+LAR+ + RR K Sbjct: 65 ICRRVRKESEIPIIMLTAKDDTTDKVMGLDLGAHDYITKPFAIEELLARMRGVLRRNKRD 124 Query: 123 NNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++ + R+ V EV L ++E +L YL+ N+G +++ QI ++G Sbjct: 125 AGMDSILRVKNLVLNQETREVRVNDEVVELTKKEYNLLLYLLKNKGIVLSREQIIEDVWG 184 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D + N+V+ +I LR K+ ++ +++ R +GY I Sbjct: 185 -YDYPGDTNIVDVYIRYLRSKIDDECKETYIETVRGVGYVI 224 >gi|291514656|emb|CBK63866.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Alistipes shahii WAL 8301] Length = 223 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 44/223 (19%), Positives = 95/223 (42%), Gaps = 8/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 +L+DD + + +G + + + + R + ++ + G + Sbjct: 5 ILLVDDEVDILEFVRYNLVREGYEVFTAENGAEALKVAAECRPHLILLDMMMPVMDGAQT 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 R ++ +S L FD G DD + KPI + +++RV AI +R+ Sbjct: 65 CRAIRRNPVLKDTMVVFLSALGEEGQQLAGFDVGADDYLTKPIKMKLLVSRVQAILKRID 124 Query: 121 VSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + V + G+ LPR+E +L+ L ++ GK + + +I++ I+ Sbjct: 125 ADRPPEKAPAPGLTVDRERYTVIRDGQEITLPRKEFALLDLLHSSPGKLIPREEIYAKIW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 G + V + ++ HI KLR+K+ + + + + + +GY + Sbjct: 185 GT-EVVVGDRTIDVHIRKLRQKIGD----ERIVTVKGVGYKYE 222 >gi|237793685|ref|YP_002861237.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] gi|229263015|gb|ACQ54048.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] Length = 234 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 47/232 (20%), Positives = 87/232 (37%), Gaps = 14/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++D ++G ++ L + + ++ + Sbjct: 6 ILIVDDEKEIRDLIDIYLTNEGYITLKASNGIEALELLKTNNVHLIILDIM--MPKMDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E IR +P+I +S + +G DD + KP + E+LARV + RR Sbjct: 64 EACMKIREEKSMPIIMLSAKSEDMDKIIGLTTGADDYITKPFNPLELLARVKSQLRRYIK 123 Query: 122 SNNRAETGPIRVFSD----------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 NN G + ++ + L RE ILE L NRG + Sbjct: 124 LNNSNGNGNENEDIVTIEDITINVATHEVKIGDQPVRLTPREFDILELLARNRGVVFSIE 183 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 +I+ ++ + N V HI KLR+K+ + + +GY ++ Sbjct: 184 KIYELVW-KEEFLDSNNTVMVHIRKLREKIEQNPRNPRYIKTVWGVGYKVEK 234 >gi|42784015|ref|NP_981262.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|42739945|gb|AAS43870.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] Length = 229 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 51/229 (22%), Positives = 89/229 (38%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++++ F + + + + D+ ++ L Sbjct: 5 ILIVEDEDILREILKDYFLSEQYIVFEARDGKEALVVFEEEEVDLVILDIML--PELDGW 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR-------EILARVAA 114 + R IR S+VP+I ++ TL F+ G DD V KP +L Sbjct: 63 SVCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKV 122 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + L+ ++ I V R V L E IL Y M N+G + + Q+ Sbjct: 123 TKQLLENEDDTLSIHGIHVHFPSRTVMVDKTDINLTHTEFEILAYFMKNQGIVLTREQLI 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 S I+G ++ A ++ V SHI LR KL K + + GY + N Sbjct: 183 SRIWG-YEFAGDDRTVNSHIRNLRNKLGEK--AKYITTVVRTGYKFEGN 228 >gi|209547782|ref|YP_002279699.1| PhoB family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533538|gb|ACI53473.1| two component transcriptional regulator PhoB, winged helix family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 227 Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats. Identities = 47/223 (21%), Positives = 93/223 (41%), Gaps = 8/223 (3%) Query: 4 LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63 +++D + +G ++ + E D+ ++ L G +EL Sbjct: 7 VVEDEEALSVLLRYNLEAEGFEVDTILRGDEAEIRLQERTPDLLILDWML--PGVSGIEL 64 Query: 64 PRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118 R +R + P+I ++ + +G DD V KP E+ + R Sbjct: 65 CRRLRMRPETERLPIIMLTARGEESERVRGLSTGADDYVVKPFSTPELVARVKAMLRRAR 124 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 +V + + G I + + + L E R+LE+LM++ G+ +++Q+ ++ Sbjct: 125 PEVLSTVLKCGDIELDRETHRVHRKSREVRLGPTEFRLLEFLMSSPGRVFSRSQLLDGVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 G D V+E V+ H+ +LRK L D + + R GYS++ Sbjct: 185 G-HDIYVDERTVDVHVGRLRKALNFSNMQDVIRTVRGAGYSME 226 >gi|108761671|ref|YP_629606.1| DNA-binding response regulator [Myxococcus xanthus DK 1622] gi|108465551|gb|ABF90736.1| DNA-binding response regulator [Myxococcus xanthus DK 1622] Length = 232 Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats. Identities = 35/227 (15%), Positives = 74/227 (32%), Gaps = 10/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + G +G + D+ ++ L Sbjct: 8 ILVVEDDLSILTGLSMNLRFEGYEVLQAQDGRTGLARALDESPDLVVLDVML--PELNGF 65 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-----ILARVAAI 115 E+ + +R + P++ +S + + G DD V KP +E Sbjct: 66 EVLKELRQRGRDTPVVVLSAKGMETDKIVGLNLGADDYVVKPFGLQELLARIKAVLRRRY 125 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 S G + V R L +E ++L + +A+ G+ + ++ S Sbjct: 126 PSAGAGSPPPVTFGDVSVDMAARTVARARTPVELTAQEFKLLAHFLAHPGRTFTREELLS 185 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221 +G + V++ + +LR K + R LGY + Sbjct: 186 GAWG-YHYEGSARTVDNFMRQLRLKFEPDPEAPRHFLTVRGLGYRFE 231 >gi|77461827|ref|YP_351334.1| two component transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77385830|gb|ABA77343.1| phosphate regulon two-component system, response regulator [Pseudomonas fluorescens Pf0-1] Length = 229 Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats. Identities = 45/224 (20%), Positives = 91/224 (40%), Gaps = 9/224 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A +++ G + + + + D+ ++ L G + Sbjct: 6 ILIVDDEAPIREMIAVALEMAGYDCLEAENSQQAHAIIVDRKPDLILLDWML--PGTSGI 63 Query: 62 ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IY 116 EL R ++ +P+I ++ + + G DD + KP RE++AR+ A Sbjct: 64 ELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 E G + + + G + E R+L++ M ++ + + Q+ Sbjct: 124 AGPTDGEAPIEVGGLLLDPISHRVTIDGRPAEMGPTEYRLLQFFMTHQERAYTRGQLLDQ 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + VEE V+ HI +LRK L + + V + R GY Sbjct: 184 VWG-GNVYVEERTVDVHIRRLRKALGDAYE-NLVQTVRGTGYRF 225 >gi|289644642|ref|ZP_06476707.1| two component transcriptional regulator, winged helix family [Frankia symbiont of Datisca glomerata] gi|289505542|gb|EFD26576.1| two component transcriptional regulator, winged helix family [Frankia symbiont of Datisca glomerata] Length = 229 Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats. Identities = 52/220 (23%), Positives = 96/220 (43%), Gaps = 5/220 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D ++G +++ W S DV ++ L G E Sbjct: 4 LVVEDETRTATLLRRGLTEEGFAVDIVADGLEAVWQASEIAYDVIVLDLML--PGLDGFE 61 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R +RA + P++ +S + + D G DD + KP E+ AR+ A+ RR Sbjct: 62 VCRRLRAAGRWAPVLMLSARSEVTDRVRGLDVGADDYLAKPFSFDELFARIRALIRRGTH 121 Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + +R+ GR G L +E +LEYLM + G+ +++T I ++ Sbjct: 122 ERPVVLDVDGLRLDPAGRTASRDGTALDLSPKEFALLEYLMRHPGEVLSRTAILEHVWD- 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 F NVV+ +I+ LR+K+ G +++ R GY + Sbjct: 181 FAYDGTSNVVDQYIAYLRRKIDRPFGISQLETVRGAGYRL 220 >gi|90962157|ref|YP_536073.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Lactobacillus salivarius UCC118] gi|227891180|ref|ZP_04008985.1| response regulator [Lactobacillus salivarius ATCC 11741] gi|90821351|gb|ABD99990.1| Alkaline phosphatase synthesis two-component response regulator phoP [Lactobacillus salivarius UCC118] gi|227867054|gb|EEJ74475.1| response regulator [Lactobacillus salivarius ATCC 11741] Length = 233 Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats. Identities = 35/230 (15%), Positives = 80/230 (34%), Gaps = 14/230 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + G ++ N+ + + D ++ L G +E Sbjct: 5 LVVDDEQAITTLLKYNLEKAGYEVKTVNNGNDALDEGLTGKYDFIILDLML--PGIDGIE 62 Query: 63 LPRIIRAHSQVPLI-GISDYPSLQTTLDFFDSGVDDVVNKPIHHR---------EILARV 112 + + IR I ++ + + G DD + KP R + Sbjct: 63 ITKRIRQEKITTYILILTAKDDEYDKIIGLELGADDYLTKPFSPREIVARLKAVKRRVEH 122 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + N + + + L +E +L Y + +G+ + + + Sbjct: 123 YSDNSEKDSKNKYYFGNYMVNLDSYELRDKNNNLIKLTPKEFELLVYFLRKKGRVLGREE 182 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221 + + ++G FD + +V+ H+S LR+K+ + + R GY + Sbjct: 183 LLNNVWG-FDYIGQTRMVDMHVSHLREKIEENPKKPIFLKTVRGFGYRFE 231 >gi|298241430|ref|ZP_06965237.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297554484|gb|EFH88348.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 234 Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats. Identities = 47/225 (20%), Positives = 93/225 (41%), Gaps = 8/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + G + +S E R D+ ++ L G L Sbjct: 8 ILVVDDEIEIVRALQRSLTAYGYEVFSASSGEEALEEVVRHRPDLILLDLGL--PGISGL 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117 E+ R +R S +P+I +S + + + D G DD V+KP + + + Sbjct: 66 EVCRKVREQSNLPIIVLSVKDTERDKVQALDLGADDYVSKPFGLNEVLARVRVALRHSAQ 125 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + GP+RV R +V+G+ L E +L+ L+ N GK + + + S + Sbjct: 126 VKVGTEPVFQAGPLRVDFSQRLVQVEGKEVKLTPTEYDLLKALIRNSGKIMTRQMLLSQV 185 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 +G E + + +I +LR+K+ + + + +GY + Sbjct: 186 WGTG-YGTEAHYLHVYIGQLRRKIEPDPAHPRFILTISGVGYRFN 229 >gi|83590322|ref|YP_430331.1| two component transcriptional regulator [Moorella thermoacetica ATCC 39073] gi|83573236|gb|ABC19788.1| two component transcriptional regulator, winged helix family [Moorella thermoacetica ATCC 39073] Length = 240 Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats. Identities = 39/221 (17%), Positives = 91/221 (41%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + ++G + + E + D+ ++ L + Sbjct: 17 ILVVEDETTLANTLARCLREEGYATDIAYDGEEGVAFAETVVYDLIILDLML--PRLDGM 74 Query: 62 ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-HREILARVAAIYRRL 119 E+ R + + P++ ++ ++ + D+G DD + KP + A + R Sbjct: 75 EVIRRLRNERIETPVLMLTARDTVADKVRGLDAGADDYLTKPFALAELLARVRALLRRES 134 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + G + + + R L +E +LEYLM N + + +TQI ++ Sbjct: 135 DNKSTVLQVGDLVMDTVSRQVRRGDREINLTNKEYALLEYLMRNPNRVLTRTQIAEHVWD 194 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D + N+V+ +I LR+K+ + + + R GY + Sbjct: 195 -YDFSGMSNIVDVYIRYLRRKIDDNFEPKLLYTIRGSGYCL 234 >gi|332994441|gb|AEF04496.1| putative DNA-binding response regulator PhoB [Alteromonas sp. SN2] Length = 229 Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats. Identities = 39/223 (17%), Positives = 95/223 (42%), Gaps = 8/223 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D A +++ + G ++ + + D+ ++ L G ++ Sbjct: 6 LVVEDEAPIREMLKFVLEQSGFNIIEAEDYDIAQEKICEPYPDLILLDWML--PGGSGVQ 63 Query: 63 LPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L + ++ H +P+I ++ + + D+G DD V KP +E++AR+ A+ RR+ Sbjct: 64 LAKSLKQHEFTRDIPVIMLTARGEEEDKIRGLDAGADDYVTKPFSPKELIARIKAVMRRV 123 Query: 120 KVSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 ++N ++ + + E ++L + M + + ++ + + Sbjct: 124 TPTSNEEPIEFNGLKLEPVSHRVMANEDPLDMGPTEFKLLHFFMTHPERVYSRELLLDNV 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G + VE+ V+ HI +LRK + + + R GY Sbjct: 184 WGT-NVYVEDRTVDVHIRRLRKAISRHGHDAMIQTVRGAGYRF 225 >gi|269796424|ref|YP_003315879.1| CheY-like receiver domain/winged-helix DNA-binding domain-containing response regulator [Sanguibacter keddieii DSM 10542] gi|269098609|gb|ACZ23045.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Sanguibacter keddieii DSM 10542] Length = 239 Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats. Identities = 49/229 (21%), Positives = 88/229 (38%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 V++DD +++ G + L D+ ++ L Sbjct: 8 LVVVDDEPNIRELLATSLRFAGFEVFAAEDGMSALKLVRDTEPDLVVLDVML--PDMDGF 65 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI---HHREILARVAAIYR 117 + R +R +P++ ++ Q + G DD V KP + V Sbjct: 66 TVTRRMREKGQHMPVLFLTARDDTQDKITGLTVGGDDYVTKPFSLEEVVARIRAVLRRTH 125 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 V + + + D + G V L E ++L YLM N G+ ++K QI + Sbjct: 126 PTPVDDAVLRFADLELDDDSHEVRRAGRVVDLSPTEFKLLRYLMLNPGRVLSKAQILDHV 185 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFD------PVDSKRFLGYSI 220 + +D + N+VES+IS LR+K+ N D + +KR +GY + Sbjct: 186 W-QYDWGGDANIVESYISYLRRKIDNAPLPDGSTPEPLIATKRGVGYLL 233 >gi|257093580|ref|YP_003167221.1| winged helix family two component heavy metal response transcriptional regulator PhoB [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257046104|gb|ACV35292.1| two component transcriptional regulator PhoB, winged helix family [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 241 Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats. Identities = 50/221 (22%), Positives = 96/221 (43%), Gaps = 5/221 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVL 61 ++++D +++ G ++ E E L D++ I+ L G G + Sbjct: 12 LVVEDDKGIQELLRFTLVCGGYQPLCVDTAEAAEALLRETLPDLALIDWMLPGKSGLALT 71 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 R +P+I ++ + + G DD + KP +E++ARV A+ RR Sbjct: 72 GRLRSDARTRHLPIILLTARGEETDRVAGLEGGADDYIVKPFSPKELVARVHAVLRRCAP 131 Query: 122 SNNRAETG--PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + PI + + + V G+ L E R+L +L+AN G+ ++ Q+ ++G Sbjct: 132 EFVKGTLCAGPIELDTVSHEARVDGQRITLTPTEFRLLRFLIANPGRVYSRQQLLDNVWG 191 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +E+ V+ HI +LR L V++ R +GY + Sbjct: 192 DHVY-IEDRTVDIHIRRLRVALG-PAAEQMVETVRGVGYKL 230 >gi|228992299|ref|ZP_04152230.1| Two-component response regulator [Bacillus pseudomycoides DSM 12442] gi|228998353|ref|ZP_04157945.1| Two-component response regulator [Bacillus mycoides Rock3-17] gi|229005836|ref|ZP_04163531.1| Two-component response regulator [Bacillus mycoides Rock1-4] gi|228755416|gb|EEM04766.1| Two-component response regulator [Bacillus mycoides Rock1-4] gi|228761398|gb|EEM10352.1| Two-component response regulator [Bacillus mycoides Rock3-17] gi|228767324|gb|EEM15956.1| Two-component response regulator [Bacillus pseudomycoides DSM 12442] Length = 225 Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats. Identities = 53/225 (23%), Positives = 97/225 (43%), Gaps = 10/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L++D +++ F ++G + + L + D+ ++ L Sbjct: 6 LLVEDERRLREIVSDYFRNEGFEVIEAEDGKQALELFAEHTIDLIMLDIML--PEIDGWS 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120 + R IR S VP+I ++ TL F+ G D+ V KP + ++AR + +R Sbjct: 64 VCRRIRKESAVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGA 123 Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 N I V R V GE L +E +L YLM N+G +++ + + Sbjct: 124 VGVAEENALSMAGIDVNRLSRTVSVNGEEIILTHKEFELLVYLMENKGIVLSRQHLLDQL 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +G +D ++ V++HI KLR KL +K + + +GY + Sbjct: 184 WG-YDYYGDDRTVDTHIKKLRNKLGDK--AKHIGTVIRVGYKFEE 225 >gi|284029757|ref|YP_003379688.1| winged helix family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283809050|gb|ADB30889.1| two component transcriptional regulator, winged helix family [Kribbella flavida DSM 17836] Length = 232 Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats. Identities = 42/228 (18%), Positives = 91/228 (39%), Gaps = 16/228 (7%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A++++ G + D ++ L G + Sbjct: 10 ILMVEDDAVIREATQLTLERHGYDVTTAEDGLEAIETFEKVHPDAVMLDVML--PGLDGI 67 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R IR S VP++ +S + ++G DD V KP + ++AR+ A+ RR Sbjct: 68 SVCRRIRETSLVPIVMVSARGDALDVVLGLEAGADDYVTKPFDTQVLVARLRAVMRRAVS 127 Query: 122 SNNRA---------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 R G + + + + G L E ++L N G ++++ Sbjct: 128 DPERPAPTSGAGVESFGDLELDREALEVRRGGSTVQLTPTELKLLIEFANNPGVVLSRST 187 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + ++ ++ + +V+ H+ +LR K+ G D +++ R GY + Sbjct: 188 LLQRVWD-YEWGGDGRLVDVHLQRLRTKI----GADRIETVRGFGYKL 230 >gi|255658536|ref|ZP_05403945.1| DNA-binding response regulator ArlR [Mitsuokella multacida DSM 20544] gi|260849340|gb|EEX69347.1| DNA-binding response regulator ArlR [Mitsuokella multacida DSM 20544] Length = 230 Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats. Identities = 48/223 (21%), Positives = 97/223 (43%), Gaps = 9/223 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++D + +G E + D+ ++ L G + Sbjct: 7 IFIVEDERRIARFLQIELEHEGFETEIEENGTRAYERIMQGNFDLVLLDVML--PGMDGM 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + +R S +P+I ++ ++ + D G DD + KP E++AR+ R+ Sbjct: 65 TICKRVREVSSLPIIMLTAKDEVEDKVAGLDIGADDYMTKPFAIEELMARIRNALRKHVP 124 Query: 122 SN------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 N R + + ++ + EV GE L ++E +LEY+M N+ + + QI Sbjct: 125 DNGGVPLEERLQVKNLVMYPKRYEVEVDGETVHLTKKEYSLLEYMMRNKRTVLTRDQILE 184 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++G +D + + NVV+ +I LR KL ++ + + R +GY Sbjct: 185 KVWG-YDYSGDTNVVDVYIRYLRAKLDDRFHEKYIYTVRGVGY 226 >gi|166364232|ref|YP_001656505.1| OmpR family two-component response regulator [Microcystis aeruginosa NIES-843] gi|166086605|dbj|BAG01313.1| two-component response regulator OmpR subfamily [Microcystis aeruginosa NIES-843] Length = 246 Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats. Identities = 48/228 (21%), Positives = 88/228 (38%), Gaps = 9/228 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++IDD + + G + + L + D+ ++ L G V Sbjct: 4 ILVIDDDPAIAELVSINLEMAGYDVNPAEDGIKGQALAVQLQPDLIMLDLMLPKVDGFTV 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R S +P++ ++ Q ++ F++G DD + KP E+LARV A+ RR Sbjct: 64 CQRLRRDERTSDIPILMLTALGQTQDKVEGFNAGADDYLTKPFEVEEMLARVRALLRRTD 123 Query: 121 VSNNRAETGPIRVF------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 A+ I F + + V L E +L L+ G+ V+ + I Sbjct: 124 RIPQAAKHSEILSFGPLTLVPERFEAVWFESVVKLTHLEFELLHCLLQRHGQTVSPSDIL 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 ++G +D + + HI LR KL + + GY ++ Sbjct: 184 KEVWG-YDPDDDIETIRVHIRHLRTKLEPDPRHPRYIKTVYGAGYCLE 230 >gi|170719341|ref|YP_001747029.1| two component transcriptional regulator [Pseudomonas putida W619] gi|169757344|gb|ACA70660.1| two component transcriptional regulator, winged helix family [Pseudomonas putida W619] Length = 229 Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats. Identities = 46/224 (20%), Positives = 92/224 (41%), Gaps = 9/224 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A +++ G + + + + D+ ++ L G + Sbjct: 6 ILIVDDEAPIREMIAVALEMAGYDCLEAENSQQAHAIIVDRKPDLILLDWML--PGTSGI 63 Query: 62 ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IY 116 EL R ++ +P+I ++ + + G DD + KP RE++AR+ A Sbjct: 64 ELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 S E G + + + G+ + E R+L++ M ++ + + Q+ Sbjct: 124 AGPSDSEAPIEVGGLLLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAYTRGQLLDQ 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + VEE V+ HI +LRK L + V + R GY Sbjct: 184 VWG-GNVYVEERTVDVHIRRLRKALGEAYE-NLVQTVRGTGYRF 225 >gi|312172890|emb|CBX81146.1| probable transcriptional regulator ycf27 [Erwinia amylovora ATCC BAA-2158] Length = 235 Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats. Identities = 41/223 (18%), Positives = 85/223 (38%), Gaps = 5/223 (2%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + ++++D + + + D+ ++ L Sbjct: 9 LILIVEDEPKLGQLMVDYLQAANYRTHHLLRGDEVVDWVKQHAPDMVLLDLMLPA--MDG 66 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L + R +R S++P++ ++ L + G DD + KP RE++ARV I +R + Sbjct: 67 LSVCRELRRFSELPVVMVTAKIEEIDRLLGLEIGADDYICKPFSPREMVARVKTILKRCR 126 Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 T + + L E R+L+ L GK ++ Q+ + +Y Sbjct: 127 RVTEETLTISPLLIDERRFQASWGEKPLDLTPAEFRLLKTLAQQPGKVFSREQLLNHLYD 186 Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + V + ++SHI LR+KL + + + +GY + Sbjct: 187 DY-RVVTDRTIDSHIKNLRRKLESLDAEQPFIRAVYGIGYRWE 228 >gi|297588278|ref|ZP_06946921.1| response regulator [Finegoldia magna ATCC 53516] gi|297573651|gb|EFH92372.1| response regulator [Finegoldia magna ATCC 53516] Length = 233 Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats. Identities = 42/224 (18%), Positives = 91/224 (40%), Gaps = 8/224 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L++D ++ +G + S E L + DV+ ++ L G E Sbjct: 10 LLVEDEDNIRQFTKINLAREGFEILEAESGEKGVELAELNKPDVAVLDIML--PGIDGFE 67 Query: 63 LPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + +I+ + +I ++ ++ + G DD + KP + RE++ R+ ++ RR Sbjct: 68 VCKILRNKFPNIVIIMLTAKTQDNDKIEGLERGADDYLTKPFNPRELILRIKSVLRRSPQ 127 Query: 122 SNNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 N ++ R G+ L E I++ LM N GK + + ++ + Sbjct: 128 KQNNSQIIEDETFKLDMYSRTFYKNGKEITLTPTELNIIKLLMQNPGKAITRDELMDKAW 187 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 G D + +V+ ++ +LR K+ + + +GY + Sbjct: 188 GE-DFIGDAKIVDVNMRRLRSKIEEDSTHPKYIVTVWGVGYRWE 230 >gi|261856400|ref|YP_003263683.1| transcriptional regulator [Halothiobacillus neapolitanus c2] gi|261836869|gb|ACX96636.1| two component transcriptional regulator, winged helix family [Halothiobacillus neapolitanus c2] Length = 236 Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats. Identities = 49/226 (21%), Positives = 93/226 (41%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++ A D G + ++ D+ ++ L GE L Sbjct: 4 ILVVDDDADLRSLLRAYLTDQGYHVIEAAEGSELWTRLENSTVDLIILDLML--PGEDGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R IRA P++ ++ + + G DD + KP H RE+LAR+ +I+RR + Sbjct: 62 ALCRTIRARQTTPILMLTARGDEMDRIIGLEMGADDYMPKPFHPRELLARIRSIFRRSEQ 121 Query: 122 SNNRAETGPIRVFSDG------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 N + V PL E R+L+ L + +++ Q+ Sbjct: 122 QNQAQPPRHLHFSGWTLDLAARHLMSADQVVIPLSTGEFRLLKTLAEHPNTVLSRDQLMD 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 A+ G + + ++ +S+LR++L + + + R GY + Sbjct: 182 ALAGR-EADPLDRTIDVMMSRLRRRLGDDAREPTLIKTIRNEGYML 226 >gi|94984303|ref|YP_603667.1| two component transcriptional regulator [Deinococcus geothermalis DSM 11300] gi|94554584|gb|ABF44498.1| two component transcriptional regulator, winged helix family [Deinococcus geothermalis DSM 11300] Length = 222 Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats. Identities = 44/219 (20%), Positives = 88/219 (40%), Gaps = 4/219 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D + G + D+ ++ L Sbjct: 5 ILLIEDNPDITRVVQYELEQAGYRVLTAPDGVTGLTSARENSPDLVILDLGL--PDFDGA 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R S VP+I ++ ++ ++ ++G DD + KP H E++ARV R + Sbjct: 63 EIARRLRKTSSVPIIILTAMDAVDRKVNLLEAGADDYMTKPFHPEELVARVKVQLRHQQH 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + R G L +E +L +L G+ ++ +I ++ Sbjct: 123 GEVISIGALEIH-PQKRLCHYNGHEVRLSPKEFDLLTFLARQPGRVYSRQEIEREVW-NG 180 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + NVV+ H++ +R KLR+ G+ + + R +GY++ Sbjct: 181 ELPSNSNVVDVHMANMRAKLRDLDGYGIIRTVRGIGYAL 219 >gi|308067994|ref|YP_003869599.1| sensory transduction protein [Paenibacillus polymyxa E681] gi|305857273|gb|ADM69061.1| Hypothetical sensory transduction protein [Paenibacillus polymyxa E681] Length = 235 Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats. Identities = 51/232 (21%), Positives = 88/232 (37%), Gaps = 15/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D + + + +G SL E D+ ++ + Sbjct: 5 ILLIEDDLSIAEMLLKALTKEGYSLTTAYDGEEGLLAFKRHTYDLVLVDLM--MPKVDGM 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR HS VP++ +S S G DD V KP E+ AR+ + RR Sbjct: 63 EVIRRIRTHSAVPILIMSAKDSDVDKALGLGFGADDYVAKPFSMLEMTARIQSAIRRSTT 122 Query: 122 SNNRAETGPI-----------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + + R+ D L +E IL+ +AN + K Sbjct: 123 YARQQQQEEQPQAQILTYGSLRIDFDHFIVIRNENEIQLTAKESDILKLFVANPNRVFTK 182 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 Q++ I+ D +ENV+ HI +LR+K+ + + + +GY + Sbjct: 183 AQLYGFIW-KDDYMGDENVINVHIRRLREKIEKDPSHPVHIKTLWGIGYKWE 233 >gi|290769859|gb|ADD61631.1| putative protein [uncultured organism] Length = 230 Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats. Identities = 40/228 (17%), Positives = 88/228 (38%), Gaps = 10/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD + + + + N+ + + ++ G Sbjct: 4 ILIIDDDRELCALIKRSVQAENIEADFCNTGKEGLQKLKEQEYQLVVLDVM--MPGMDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL------ARVAAI 115 E IR + +P++ + + + +G DD + KP E++ R Sbjct: 62 ETLEEIRKENSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRRYTR 121 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + + + +++ + R + F LP +E +L Y ++GK + K QI+ Sbjct: 122 FNHQAGAVQKLDFDGLQIDLENRSVTTENGTFELPPKEFDLLLYCAKHQGKILTKQQIYE 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 ++G + N + + IS+LRKKL N + + + +GY + Sbjct: 182 EVWGEEYFYDDSN-IMAIISRLRKKLEVNPSSPKYIQTVKGIGYRFNK 228 >gi|258591886|emb|CBE68189.1| response regulator in two-component regulatory system with PhoR (or CreC), regulation of Pi uptake (OmpR family) [NC10 bacterium 'Dutch sediment'] Length = 227 Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats. Identities = 36/223 (16%), Positives = 85/223 (38%), Gaps = 6/223 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61 +++DD + +G + + L R + ++ L G V Sbjct: 4 LVVDDEKDITALVAYHLEREGFRVLQAHDGLQALELVKRERPSLLVLDLMLPHLSGLDVC 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA--AIYRRL 119 R +++P++ ++ + + G DD + KP +E++ARV Sbjct: 64 RRLRKEPDTARLPILMLTAKAEETDKVLGLELGGDDYLTKPFGPKELVARVKALIRRSEE 123 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + G + + D ++ L +E +L+ L+ +G+ + + + ++G Sbjct: 124 VQGGEIVKAGSLEIDLDRYTVAIRKRAVELTPKEFDLLKALVLAKGRVLTREYLLDRVWG 183 Query: 180 -LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +E V+ H+ +LR+KL + + + +GY + Sbjct: 184 YERASEIESRTVDVHVRRLREKLG--PEAARIVTVKSVGYRFN 224 >gi|238919096|ref|YP_002932610.1| DNA-binding transcriptional regulator BaeR [Edwardsiella ictaluri 93-146] gi|238868664|gb|ACR68375.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146] Length = 243 Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats. Identities = 49/220 (22%), Positives = 93/220 (42%), Gaps = 4/220 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + I G + + ++ ++ L G L Sbjct: 19 LIVEDEPKLGQLLIDYLIAAGYRPHWLSRGDEVLPYLQEHLCNLILLDLML--PGVDGLT 76 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R IR S+VP++ ++ L + G DD + KP RE++ARV I RR + Sbjct: 77 LCREIRRTSEVPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCMLQ 136 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 + +E P+ + + ++ L + E R+L+ L G ++ Q+ + +Y + Sbjct: 137 DTLSEPTPLLIDESRFQASYRQQLLDLTQAEFRLLKTLATQPGCVFSREQLLNHLYDDY- 195 Query: 183 EAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 V + V+SHI LR+KL + + S +GY + Sbjct: 196 RVVTDRTVDSHIKNLRRKLEPVEGDEPLIRSVYGVGYRWE 235 >gi|319945731|ref|ZP_08019982.1| DNA-binding response regulator [Streptococcus australis ATCC 700641] gi|319748091|gb|EFW00334.1| DNA-binding response regulator [Streptococcus australis ATCC 700641] Length = 217 Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats. Identities = 45/220 (20%), Positives = 91/220 (41%), Gaps = 7/220 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D L+++G + G + + L D+ ++ L L Sbjct: 3 ILIVEDEVLIREGMSDYLMECGNEVFEAGDGQEALDLFHREAPDLVLLDIQLPI--LNGL 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IR S VP++ ++ + L F D + +L + Sbjct: 61 EVLKTIRKTSSVPVLMLTAFHDEDYKLTAFGELADGY-LEKPFSLSLLKVRIEAIFKKLQ 119 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + G RV + + G+ + +E ILEYL+ + GK ++QI A++ Sbjct: 120 PSRVFTYGEARVDFESYTASLAGQAISMNAKELEILEYLLQHEGKARTRSQILDAVWKET 179 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +E + V++ +I +LRKKL D + + R +GY ++ Sbjct: 180 EEIPFDRVIDVYIKELRKKLEL----DCIVTVRNVGYKLE 215 >gi|218670388|ref|ZP_03520059.1| two component transcriptional regulator, winged helix family protein [Rhizobium etli GR56] Length = 231 Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats. Identities = 48/225 (21%), Positives = 84/225 (37%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++D G++ D+ ++ L Sbjct: 5 ILVVDDEPHIRDVICFALERGGLTSTAVRGGTEAMAAFRRGNIDLIILDIG--MPDMDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR S +P++ +S + + G DD V KP RE++ARV AI +R Sbjct: 63 EVCRQIRQTSALPILFLSARDEEIDRILGLEIGGDDYVTKPFSPRELIARVKAILKRSGN 122 Query: 122 SNNRAETG------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 I + GR + E ILE L++ G ++ Q+ Sbjct: 123 GAAPDRRHAALVAGEIILDRHGRTVMFGDSALAMTGLEFAILEALLSRPGMVFSREQLME 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 A YG V + ++SHI +R K G + + +G+ + Sbjct: 183 AAYGAGTY-VADRTIDSHIRNIRAKFTAVGGSGIIATVHGIGFKL 226 >gi|218898283|ref|YP_002446694.1| regulatory protein VanR [Bacillus cereus G9842] gi|218544757|gb|ACK97151.1| regulatory protein VanR [Bacillus cereus G9842] Length = 228 Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats. Identities = 50/227 (22%), Positives = 93/227 (40%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ ++G+ + L D+ ++ + Sbjct: 5 ILIVDDDKEIRNLISVYLENEGLKTQKAEDAIQALQLLEEKEFDLVILDIM--MPNMDGI 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E IR +P+I +S + SG DD ++KP + E++ARV + RR K Sbjct: 63 EACMKIREDRNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 122 Query: 122 SNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N E V +D R V+G+ L +E ILE L N+G ++ +I+ Sbjct: 123 YNTSVEHNKSILEIGDLTVNTDTRQVWVRGKETRLTPKEFAILELLARNKGIVLSVAKIY 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220 A++ +N + HI+K+R K+ + + +GY I Sbjct: 183 EAVWKEV-FYKSDNTIMVHITKIRDKIEEDSKHPIYIKTVWGIGYKI 228 >gi|145301083|ref|YP_001143924.1| two-component system response regulator [Aeromonas salmonicida subsp. salmonicida A449] gi|142853855|gb|ABO92176.1| two-component system response regulator [Aeromonas salmonicida subsp. salmonicida A449] Length = 240 Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats. Identities = 44/229 (19%), Positives = 81/229 (35%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ G + + D+ ++ G+ Sbjct: 7 LLIVDDDQEIRELLNEYLTRAGFQVLTAAEGNEMRQQLALHSPDLIILDIM--MPGDDGF 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L + IR SQVP+I ++ + + G DD + KP RE+ AR+ A+ RR + Sbjct: 65 TLCQQIRRDSQVPIIMLTAASDEADRVIGLELGADDYIAKPFSPRELQARIKALLRRAEF 124 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF---------PLPRRERRILEYLMANRGKRVAKTQ 172 E P R L + +L + G + + Sbjct: 125 RQPEKEKEPSRRLRFAEWTLDTLSHQLTHDDGSLLDLSGSDALLLGMFLQQPGVVLDRDT 184 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 I A G + E ++ IS+LR+KL + + + R GY + Sbjct: 185 ISDATRGR-ESLPMERGIDVQISRLRQKLGDNGKSPRIIKTIRGSGYML 232 >gi|294499355|ref|YP_003563055.1| two-component response regulator [Bacillus megaterium QM B1551] gi|294349292|gb|ADE69621.1| two-component response regulator [Bacillus megaterium QM B1551] Length = 227 Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats. Identities = 40/226 (17%), Positives = 84/226 (37%), Gaps = 9/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D + + + ++ S + + D+ ++ L Sbjct: 4 ILLIEDEVSIAELQRDYLEINDFEIDVQYSGDKGLEKALNEHFDLVILDIML--PKVSGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAIY 116 E+ + IRA +P+I +S + G DD + KP R Sbjct: 62 EVCKQIRAAKDIPIILVSAKKEEIDKIRGLGLGADDYITKPFSPGELVARVKAHLARYER 121 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 K + + + R V + +E +L++++++ + ++K +F Sbjct: 122 LSDKQEKRMIRIHGLAIDTLARRVFVNDKEVFFTAKEFDLLKFIVSHPNQVLSKEHLFEK 181 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 I+G FD + + + V HI KLR+KL +++ GY + Sbjct: 182 IWG-FDSSGDISTVTVHIRKLREKLEENPADPQYLETVWGAGYRFN 226 >gi|255523846|ref|ZP_05390810.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|255512408|gb|EET88684.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] Length = 227 Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats. Identities = 40/226 (17%), Positives = 89/226 (39%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ ++G ++ ++ + + D+ ++ + Sbjct: 5 ILVVDDDKNIRNLIKVYLENEGYNILEASNGAEALVMINENDFDLVILDVM--MPILDGI 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115 IR + +P+I +S + G DD V+KP E+ R Sbjct: 63 SACIKIRENYTMPIIFLSAKDEEIDKIQGLTVGADDYVSKPFGSMELIARVKAQLRRYKK 122 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + +++ + + D + V+G+ L +E ILE L NRG + +++ Sbjct: 123 FNVEPQNSSIVTIEDLTINFDTHEVTVRGDKVKLTPKEFDILECLARNRGMVFSVQKLYE 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 I+ + V + + HI+ LR+K+ + V + +GY I Sbjct: 183 IIW-KEEFVVSDTSIVVHITNLRQKIEIDPKRPKYVKTVWGVGYKI 227 >gi|228924304|ref|ZP_04087554.1| hypothetical protein bthur0011_52580 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228835330|gb|EEM80721.1| hypothetical protein bthur0011_52580 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 231 Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats. Identities = 44/228 (19%), Positives = 87/228 (38%), Gaps = 10/228 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + D ++ ++ + + + D++ ++ L L Sbjct: 6 LIVEDEREIADLVELYLKNENYTVFKYYTAKEALECIDKNALDLAILDIML--PDASGLT 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + IR P+I ++ + + G DD + KP E++ARV A RR K Sbjct: 64 ICQKIRDKHTYPIIMLTAKDTEVDKITGLTIGADDYITKPFRPLELIARVKAQLRRYKKY 123 Query: 123 NNRAETGPIRVFS-------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 N + + + + L E IL L N+G V+ Q+F Sbjct: 124 NGVTAQNENVIVHAGLVINISTHECSLNEKPLSLTPTEFSILRILCENKGNVVSSEQLFH 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDW 222 I+G + N + HI LR+K+ + + + +GY I+ Sbjct: 184 EIWGDEYFSKSNNTITVHIRHLREKMNDMADNPKYIKTVWGIGYKIEK 231 >gi|223985998|ref|ZP_03636030.1| hypothetical protein HOLDEFILI_03336 [Holdemania filiformis DSM 12042] gi|223962054|gb|EEF66534.1| hypothetical protein HOLDEFILI_03336 [Holdemania filiformis DSM 12042] Length = 230 Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats. Identities = 31/222 (13%), Positives = 84/222 (37%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + DG + + D+ ++ L Sbjct: 4 ILIVEDDSFLNKMLDYNLTADGYGVTSALNARTAADAIRQREFDLVLLDINL--PDGNGF 61 Query: 62 ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH---REILARVAAIYR 117 EL ++I H +I ++ + ++ G D + KP + + + + Sbjct: 62 ELCKLIKPQHPDTIVIFLTANDQESDQIRGYEVGAVDYITKPFVIGALQRKIKAMFTMLE 121 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 K + + + G + + + + G+ L E ++L N + + + Q+ + Sbjct: 122 HHKPAKDIYDDGRLFLDFSEQTASLNGKPLTLSPMEYKMLNLFRKNPRRVLTRGQLLEKL 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 + + + V+E+ + + IS++R K+ + G + + +GY Sbjct: 182 WDIDERFVDEHTLTTSISRIRSKIESDGGAPYIKTVYGMGYQ 223 >gi|332974487|gb|EGK11409.1| response regulator [Desmospora sp. 8437] Length = 237 Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats. Identities = 53/226 (23%), Positives = 92/226 (40%), Gaps = 13/226 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDG-VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + +DD + F + + + E + S D ++ L G Sbjct: 15 ILAVDDDRDIVHLIREGFRYESSFEVIPAYTGEEALKIVDSRSVDFVILDIML--PGLDG 72 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E R IR VP++ +S + + G DD + KP RE+LARV A +RR++ Sbjct: 73 METCRRIRQQHTVPILLLSARDRELDKVIGLEIGADDYLTKPFSPRELLARVKAHFRRVE 132 Query: 121 VSNNRAETGPI----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + + GE L +E +IL +L + + +++ Q++ Sbjct: 133 RMKREMGPYTRSGPLSINEQTYEVFMDGEKVDLSAKEFQILSFLAKHPNQVLSREQLYQK 192 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 I+G E + N V HI +RKKL G D + + +GY W Sbjct: 193 IWGQ--EFGDLNTVTVHIKNIRKKL----GRDCIKTIWGVGYKFAW 232 >gi|319652093|ref|ZP_08006213.1| hypothetical protein HMPREF1013_02825 [Bacillus sp. 2_A_57_CT2] gi|317396241|gb|EFV76959.1| hypothetical protein HMPREF1013_02825 [Bacillus sp. 2_A_57_CT2] Length = 228 Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats. Identities = 36/223 (16%), Positives = 83/223 (37%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ +D + A +G + S + ++ G Sbjct: 4 ILVAEDELAISRVLSAYLQREGFEVLTAYDGTSALEKFFSHSPQLVILDIM--MPGMDGW 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 + IR S P+I ++ + L ++G DD ++KP E++ARV Sbjct: 62 SVLEKIREKSACPVIMLTALGDIDYKLKGLNTGADDYISKPFIGDEVIARVNAVLRRSAN 121 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + + G + + D + G+ L R+ +L +L + + Q+ ++ Sbjct: 122 VYTDEHIIQYGSLTINFDAHTIFLNGKEISLTPRDLSLLLFLAERPNRTFTRDQLIEHVW 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220 G+ D + V+ + ++R+ L + + + + R +GY Sbjct: 182 GM-DYDGSDRAVDLAVKRIRQALTDWPETEGEIRTLRGMGYQF 223 >gi|294812995|ref|ZP_06771638.1| Two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294325594|gb|EFG07237.1| Two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 250 Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats. Identities = 43/223 (19%), Positives = 86/223 (38%), Gaps = 6/223 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L +D A + + +G +E + D+ ++ L G LE Sbjct: 30 LLAEDDASISEPLARALRREGYEVEVREDGPAALEAGLAGGVDLVVLDLGL--PGMDGLE 87 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-HREILARVAAIYRRLK 120 + R +R+ P++ ++ T+ D+G DD V KP + A + R Sbjct: 88 VARRLRSEGHTVPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAT 147 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 T +R+ + + E L +E +L L+ + G+ V + Q+ ++ Sbjct: 148 EPAPAPSTHGVRIDVESHRAWMGEEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 207 Query: 181 FDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222 + ++ HIS LRKKL + + + R +G+ + Sbjct: 208 TWWS-STKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEK 249 >gi|290510605|ref|ZP_06549975.1| DNA-binding response regulator [Klebsiella sp. 1_1_55] gi|289777321|gb|EFD85319.1| DNA-binding response regulator [Klebsiella sp. 1_1_55] Length = 238 Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats. Identities = 47/228 (20%), Positives = 91/228 (39%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + D+G + + D ++ L G L Sbjct: 5 ILLVEDDDDIATLLRLNLQDEGYQIVHEADGDQALVQLEKQVWDAVILDLML--PGVDGL 62 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARVA 113 E+ R IR ++ P+I IS S + + G DD + KP + + R Sbjct: 63 EICRRIRQMTRYLPVIIISARTSEMHRVLGLEMGADDYLAKPFSLLELIARVKALFRRQE 122 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 A+ + L + R + + R+ +++GEV L RE +L Y + G+ ++ + Sbjct: 123 AMGQNLLMDAGRLSCHGLSIDPLSREVKLRGEVVDLTPREFDLLYYFARHPGEVFSRLAL 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++G + E+ V +HI++LR K+ + D + + GY Sbjct: 183 LEQVWG-YQHEGYEHTVNTHINRLRSKIERDPAEPDIILTVWGKGYKF 229 >gi|257439473|ref|ZP_05615228.1| DNA-binding response regulator VicR [Faecalibacterium prausnitzii A2-165] gi|257198132|gb|EEU96416.1| DNA-binding response regulator VicR [Faecalibacterium prausnitzii A2-165] Length = 241 Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats. Identities = 40/228 (17%), Positives = 88/228 (38%), Gaps = 10/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD + + + + N+ + + ++ G Sbjct: 15 ILIIDDDRELCALIKRSVQSEHIEADFCNTGKEGLQKLKEQEYQLVVLDVM--MPGMDGF 72 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL------ARVAAI 115 E IR + +P++ + + + +G DD + KP E++ R Sbjct: 73 ETLEEIRKENSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRRYTR 132 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + + + +++ + R + F LP +E +L Y ++GK + K QI+ Sbjct: 133 FNHQAGAVQKLDFDGLQIDLENRSVTTENGTFELPPKEFDLLLYCAKHQGKILTKQQIYE 192 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 ++G + N + + IS+LRKKL N + + + +GY + Sbjct: 193 EVWGEEYFYDDSN-IMAIISRLRKKLEVNPSSPKYIQTVKGIGYRFNK 239 >gi|239918315|ref|YP_002957873.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Micrococcus luteus NCTC 2665] gi|281415488|ref|ZP_06247230.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Micrococcus luteus NCTC 2665] gi|239839522|gb|ACS31319.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Micrococcus luteus NCTC 2665] Length = 239 Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats. Identities = 48/222 (21%), Positives = 92/222 (41%), Gaps = 8/222 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + G + ++ DV ++ L G +E Sbjct: 19 LVVDDEKPLARMVATYLERAGYEVALTHTGPAAVQAARVHEPDVMVLDLGL--PGLDGIE 76 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +RA S+ ++ ++ L+ G DD + KP RE++ARV A+ RR + + Sbjct: 77 VCRRVRAFSECYVLMLTARGDEHHRLEGLAVGADDYITKPFSVRELVARVGAVMRRPRTT 136 Query: 123 NNRAETGPIR----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + E + + + V G+V L R E +L L + ++ Q+ ++ Sbjct: 137 VSAPEPERVCGDLVIDLAAHEARVSGQVVQLTRTEFDLLAALSGRPHQAFSRRQLIDIVW 196 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +E +V+ HI LR+KL +D+ R +GY + Sbjct: 197 D-PAWVGDERLVDVHIKNLRRKLDANPA-RYIDTVRGVGYRM 236 >gi|134102881|ref|YP_001108542.1| two-component response regulator [Saccharopolyspora erythraea NRRL 2338] gi|133915504|emb|CAM05617.1| two-component response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 228 Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats. Identities = 41/219 (18%), Positives = 86/219 (39%), Gaps = 5/219 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + + +G + + D+ ++ L G ++ Sbjct: 9 LVVDDDPALAEMLTIVLRGEGFETAVVSDGTKAMPALRELKPDLVLLDLML--PGMNGID 66 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + IR S VP++ ++ + +SG DD V KP +E++AR+ A RR Sbjct: 67 VCKAIRTESVVPIVMLTAKSDTVDVVLGLESGADDYVVKPFKPKELVARLRARLRRTDAE 126 Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + G + G+ L E +L L + + + ++G + Sbjct: 127 PAEVLSIGDLTIDVPGHEVTRDGQPIALTPLEFDLLVALARKPRQVFTREVLLEQVWG-Y 185 Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219 A + +V H+ +LR K+ + V + R +GY Sbjct: 186 RHAADTRLVNVHVQRLRSKVERDPERPEVVLTVRGVGYK 224 >gi|320531513|ref|ZP_08032466.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 171 str. F0337] gi|320136270|gb|EFW28265.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 171 str. F0337] Length = 219 Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats. Identities = 47/222 (21%), Positives = 88/222 (39%), Gaps = 10/222 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + G + + L D+ ++ L Sbjct: 4 ILIVEDEPRIVAFLTKGLKAAGFTTHTTAAGRQAVALAVQESFDLIILDVGL--PDIDGF 61 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118 E+ + +R VP+I ++ S+ + + G DD + KP E+ RV Sbjct: 62 EVLQQLRGQGVGVPVIMLTARSSVADRVAGLEGGADDYMPKPFSFEELLARIRVRLRPDT 121 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 R + + R ++G L RE + E M + G+ +++ Q+ S+++ Sbjct: 122 TGPDQMRLTHRDMVLDLRTRTLTLEGRTVELSAREFALAEAFMRHPGQVLSREQLLSSVW 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 GL D NVVE ++S LR KL G V++ R +GY + Sbjct: 182 GL-DFDPGSNVVEVYVSYLRNKL----GRQRVETVRGMGYRL 218 >gi|302337766|ref|YP_003802972.1| two component transcriptional regulator, winged helix family [Spirochaeta smaragdinae DSM 11293] gi|301634951|gb|ADK80378.1| two component transcriptional regulator, winged helix family [Spirochaeta smaragdinae DSM 11293] Length = 231 Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats. Identities = 47/229 (20%), Positives = 91/229 (39%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D ++ +G + E + + D+ ++ L G Sbjct: 4 ILIIEDEPGLQMTLEDRLRVEGYEVTLAGDGLRGEAAALTGQHDLIILDIML--PGRDGF 61 Query: 62 ELP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R+ +A P++ ++ S + G DD + KP +LARV A+ RR Sbjct: 62 SVCSRLRKAGINTPVLMLTARGSDIDIVAGLRQGADDYMAKPFDMNVLLARVEALLRRAT 121 Query: 121 V---------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + R + G + D R+ + + L +E R+LEYL+ K +++ Sbjct: 122 MASSALAEEGEQPRYQFGTFLLDLDKRELYLDDDPVLLSAQEYRLLEYLVRRPNKVLSRD 181 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 QI ++ + V+ H++KLR+KL + + R GY Sbjct: 182 QIMDEVWS-YSSEATSRTVDVHVAKLRQKLGETAIPRHILTIRGRGYKF 229 >gi|311739823|ref|ZP_07713657.1| two component system response regulator [Corynebacterium pseudogenitalium ATCC 33035] gi|311304896|gb|EFQ80965.1| two component system response regulator [Corynebacterium pseudogenitalium ATCC 33035] Length = 230 Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats. Identities = 39/221 (17%), Positives = 86/221 (38%), Gaps = 6/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + +G+ D+ ++ L G + Sbjct: 5 ILVVDDDPAISEMLTIVLESEGLKPIPVMDGNDAVPAFEQHEPDLILLDLML--PGMNGV 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R IR S VP++ ++ + +SG DD + KP +E++AR+ A RR Sbjct: 63 DICRAIRRESSVPIVMLTAKTDTVDVVLGLESGADDYITKPFKPKELIARIRARLRRTDS 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFP--LPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + V + + L E +L + G+ + + +++G Sbjct: 123 AESEILEVADLVIDVPEHTVRRTDGTELNLTPLEFDLLLEMARRPGQVHTRESLLESVWG 182 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVD-SKRFLGYS 219 + A + +V H+ +LR K+ + + + R +GY Sbjct: 183 YRN-ASDTRLVNVHVQRLRAKIEHDPEDPQIVLTVRGVGYK 222 >gi|110799600|ref|YP_696918.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124] gi|168210169|ref|ZP_02635794.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC 3626] gi|168213656|ref|ZP_02639281.1| DNA-binding response regulator [Clostridium perfringens CPE str. F4969] gi|168215869|ref|ZP_02641494.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239] gi|169344243|ref|ZP_02865225.1| DNA-binding response regulator [Clostridium perfringens C str. JGS1495] gi|182626272|ref|ZP_02954029.1| DNA-binding response regulator [Clostridium perfringens D str. JGS1721] gi|110674247|gb|ABG83234.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124] gi|169297702|gb|EDS79802.1| DNA-binding response regulator [Clostridium perfringens C str. JGS1495] gi|170711758|gb|EDT23940.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC 3626] gi|170714853|gb|EDT27035.1| DNA-binding response regulator [Clostridium perfringens CPE str. F4969] gi|177908451|gb|EDT70989.1| DNA-binding response regulator [Clostridium perfringens D str. JGS1721] gi|182382158|gb|EDT79637.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239] Length = 227 Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats. Identities = 38/225 (16%), Positives = 90/225 (40%), Gaps = 10/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D ++ F + + S E + D++ ++ L G Sbjct: 3 ILLVEDEESIRGFLRINFQRENFQVIECESGEEGVRKALIEKPDIAILDVML--PGMNGF 60 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR--- 117 E+ + +R ++ +I ++ + G DD V KP + EI RV A+ R Sbjct: 61 EVCQKLRESFPRMGIIMLTAKGEDMDKIMGLQFGADDYVLKPFNPLEITLRVKALIRRLE 120 Query: 118 --RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + +++ E ++ + + + +E +++ M N GK + ++ + Sbjct: 121 GINEENNSDCIEVDNFKLDLYSQSLYKENVEIDVTPKEFLLMKIFMQNPGKAFTRDELLN 180 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219 ++G+ D + +V+ +I +LR K+ +++ GY Sbjct: 181 LVWGI-DFFGDPKIVDVNIRRLRSKIEENSSKPKYIETVWGTGYR 224 >gi|256004559|ref|ZP_05429537.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 2360] gi|281417251|ref|ZP_06248271.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum JW20] gi|255991431|gb|EEU01535.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 2360] gi|281408653|gb|EFB38911.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum JW20] gi|316940723|gb|ADU74757.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 1313] Length = 223 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 43/219 (19%), Positives = 90/219 (41%), Gaps = 3/219 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + D+G ++ + D+ ++ L Sbjct: 4 ILIVEDDKDIVNNLTEYLRDEGFDVDSAGGQNEAINKMDKNKYDLLLVDISLK--DGNGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R ++ +P+I +S + + G DD + KP RE+L+R+ RR Sbjct: 62 AVCSAARENNDIPVIFLSASDDEYNIVTGLEIGADDYIVKPFRPRELLSRIRKALRRNGK 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + E IRV + G L E R+L + N+G ++++++ I+ + Sbjct: 122 AGAVIEHDNIRVDTVRGIVTKNGSEIFLSALEYRLLLVFLNNKGAVLSRSRLLEEIWNIA 181 Query: 182 DEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYS 219 E V +N + +I +LR+K+ + + + R LGY Sbjct: 182 GEYVNDNTLTVYIKRLREKIEDDPQNPTFIKTVRGLGYK 220 >gi|221199407|ref|ZP_03572451.1| transcriptional activator protein IrlR [Burkholderia multivorans CGD2M] gi|221205690|ref|ZP_03578705.1| transcriptional activator protein IrlR [Burkholderia multivorans CGD2] gi|221174528|gb|EEE06960.1| transcriptional activator protein IrlR [Burkholderia multivorans CGD2] gi|221180692|gb|EEE13095.1| transcriptional activator protein IrlR [Burkholderia multivorans CGD2M] Length = 225 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 44/221 (19%), Positives = 87/221 (39%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D F + G ++ L DV ++ L Sbjct: 3 ILIVEDEPKTGAYLKKGFEESGFCVDLAKDGAQGLLLAQKESYDVIVLDVML--PVLDGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120 + + +R P++ ++ + + G DD + KP E+LARV R Sbjct: 61 SVLKRLRDTHATPVMFLTARGDVHDRAHGLELGADDYLVKPFAFVELLARVRTLARRGPP 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 R G + + R + L RE +L+ L G+ +++TQI S ++ + Sbjct: 121 RETERLAVGDLEIDVVRRRVKRGTVRIDLTPREFSLLQLLARRHGEVLSRTQIASYVWDM 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + NVVE I +LR K+ + + + R +GY+++ Sbjct: 181 -NFDSDTNVVEVAIRRLRAKVDDAFPLKLIHTVRGVGYALE 220 >gi|86141687|ref|ZP_01060211.1| DNA-binding response regulator [Leeuwenhoekiella blandensis MED217] gi|85831250|gb|EAQ49706.1| DNA-binding response regulator [Leeuwenhoekiella blandensis MED217] Length = 227 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 37/223 (16%), Positives = 91/223 (40%), Gaps = 9/223 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 +L+DD + + ++G + ++ + + ++ + G + Sbjct: 8 ILLVDDEPDILEIVGYNLSNEGYQVITASNGKEGVKAAKKNNPHLIILDVMMPEMDGIEA 67 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117 E R + H + + ++ + + +D+G DD + KPI + ++++V + Sbjct: 68 CEQIRKLPGHEETIIAFLTARGEDYSQVAGYDAGADDYITKPIKPKVLVSKVKALLRRLK 127 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + ++ + G + + + + LPR+E +L L + GK + I + Sbjct: 128 EEEEGDSSVKIGDLVINREEYKIIKDKKEMVLPRKEFELLSLLASKPGKVFKREDILDKV 187 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G + V ++ HI KLR+K+ +K + + +GY Sbjct: 188 WGN-EVVVGGRTIDVHIRKLREKIGDKK----FKTIKGVGYKF 225 >gi|152964864|ref|YP_001360648.1| two component transcriptional regulator, winged helix family [Kineococcus radiotolerans SRS30216] gi|151359381|gb|ABS02384.1| two component transcriptional regulator, winged helix family [Kineococcus radiotolerans SRS30216] Length = 226 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 57/225 (25%), Positives = 99/225 (44%), Gaps = 8/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D D L +G + + A D+ ++ L G Sbjct: 4 ILVVEDEESFSDPLSYLLRREGYDVAVTETGPEALEEFDKAGADLVLLDLML--PGLPGT 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R S VP+I ++ S + + G DD V KP RE+LARV A+ RR Sbjct: 62 EVCRQLRTRSSVPVIMLTAKDSEIDKVVGLEIGADDYVTKPYSSRELLARVRAVLRRGAE 121 Query: 122 SNNRAETGPI----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + +T R+ D V+GE PLP +E +LE L+ N G+ + + Q+ + Sbjct: 122 PEDLVQTTVEAGGVRMDVDRHVVTVRGERVPLPLKEFELLELLLRNAGRVLTRVQLIDRV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 +G D + ++ H+ +LR K+ + + + R LGY + Sbjct: 182 WG-SDYVGDTKTLDVHVKRLRAKIEPDPANPRHLVTVRGLGYKFE 225 >gi|255319358|ref|ZP_05360575.1| transcriptional activator protein IrlR [Acinetobacter radioresistens SK82] gi|262379800|ref|ZP_06072956.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter radioresistens SH164] gi|255303751|gb|EET82951.1| transcriptional activator protein IrlR [Acinetobacter radioresistens SK82] gi|262299257|gb|EEY87170.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter radioresistens SH164] Length = 223 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 43/223 (19%), Positives = 93/223 (41%), Gaps = 4/223 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + + G + L D+ ++ L Sbjct: 3 ILIIEDEQKIARYLAKGLTESGYRTWLAHDGREGLMLFEQHAIDLVILDVML--PELNGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + +R S+VP++ ++ S+ + + G DD + KP + E+LARV + RR Sbjct: 61 QVIQTLRQFSEVPVLFLTARDSVLDRVKGLELGADDYLVKPFSYIELLARVKTLLRRSSA 120 Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 ++ + L +E +L +L ++G+ + +TQI S ++ + Sbjct: 121 KVVEQLQVENLKIDLLEHKVYRDRNLIELTNKEYALLRFLAEHQGEIMTRTQIASQVWNI 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 + + NVV+ + +LR K+ + + + R +GY +D N Sbjct: 181 -NFDTDTNVVDVAVRRLRAKIDDAYQPKLIHTIRGMGYKLDTN 222 >gi|104784360|ref|YP_610858.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas entomophila L48] gi|95113347|emb|CAK18075.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas entomophila L48] Length = 229 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 94/224 (41%), Gaps = 9/224 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A +++ G + + + + D+ ++ L G + Sbjct: 6 ILIVDDEAPIREMIAVALEMAGYDCLEAENSQQAHAIIVDRKPDLILLDWML--PGTSGI 63 Query: 62 ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 EL R ++ +P+I ++ + + G DD + KP RE++AR+ A+ RR Sbjct: 64 ELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123 Query: 119 LKVSNNRAETGPIR--VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 S++ A + + G + E R+L++ M ++ + + Q+ Sbjct: 124 TGPSDSEAPIEVGGLLLDPISHRVTIDGRPAEMGPTEYRLLQFFMTHQERAYTRGQLLDQ 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + VEE V+ HI +LRK L + V + R GY Sbjct: 184 VWG-GNVYVEERTVDVHIRRLRKALGEAYE-NLVQTVRGTGYRF 225 >gi|320161338|ref|YP_004174562.1| OmpR family two-component response regulator [Anaerolinea thermophila UNI-1] gi|319995191|dbj|BAJ63962.1| OmpR family two-component response regulator [Anaerolinea thermophila UNI-1] Length = 239 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 45/225 (20%), Positives = 89/225 (39%), Gaps = 10/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + + N+ L D+ ++ G E Sbjct: 6 LIVDDDPTLLRFLQDFLRAEAFEVLAANNGHEALKLAYQEHPDLVVLDVM--MPGMDGWE 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------AIY 116 + + S +P+I ++ S Q L F GVDD + KP E+ AR+ Sbjct: 64 VCSRLHELSDIPIILLTAKTSEQDKLRGFQLGVDDYLTKPFSFAELAARIRAILARAQRS 123 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + N I + ++ PL E R+LEYL N+G+ V++ ++ Sbjct: 124 LPAQRKNQITFGEFIMDLDKRELWRGREQMIPLTPTEFRLLEYLARNKGRAVSEQELSEQ 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++G++ + + + V +I LR+K+ + + + R GY + Sbjct: 184 VWGVYLSS-DRSAVRRYIWLLRQKIESDPTHPRWIRTVRGYGYRL 227 >gi|226310855|ref|YP_002770749.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226093803|dbj|BAH42245.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 229 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 46/223 (20%), Positives = 88/223 (39%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D ++ A G + N L + D+ ++ L Sbjct: 4 ILLVEDELVIARVIKAYLQKAGYEVWSANDGLEAMELFDEKKPDLVLLDVML--PERNGW 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IR S P+I ++ L + G DD + KP E++ARV A+ RR + Sbjct: 62 EILQYIREKSSCPVIIMTALGQTDQKLKGLNQGADDYITKPFVADEVVARVNAVLRRSVI 121 Query: 122 SNNRAETGPI---RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ET ++ + G R+ +L +L N + + Q+ ++ Sbjct: 122 LVKDQETRLFGSLKINFQSHHVTLHGLELTFHPRDLSLLLFLAQNPNQTFTREQLIEQVW 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 G+ D + V+ I ++RK L N + + ++R +GY Sbjct: 182 GM-DYGGSDRAVDLAIKRVRKTLENWPVQEGEIKTQRGVGYQF 223 >gi|254522529|ref|ZP_05134584.1| two-component system response regulator [Stenotrophomonas sp. SKA14] gi|219720120|gb|EED38645.1| two-component system response regulator [Stenotrophomonas sp. SKA14] Length = 234 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 50/221 (22%), Positives = 94/221 (42%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + G+ E + + + D+ ++ L + + Sbjct: 16 ILIVEDEPRLAAVLRDYLAAAGMVSEWVDDGGQVIEAFARYQPDLVLLDLMLPQR--DGV 73 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 +L R +RA S VP+I ++ L + G DD + KP RE++ARV A+ RR + Sbjct: 74 DLCRELRASSNVPVIMVTARVEEIDRLLGLEIGADDYICKPFSPREVVARVVAVLRRYRP 133 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + G+ L E R+L L+A G+ A+ ++ +Y Sbjct: 134 DPAARTNSGLHIDEPAARATWNGKGLDLTPVEYRLLRTLLATPGRIWARDELLDRLYLDH 193 Query: 182 DEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 V+ V+SH+ LR+KL + +P+ S +GYS + Sbjct: 194 RVVVD-RTVDSHVRNLRRKLADAGMEGEPIRSVYGMGYSYE 233 >gi|295093072|emb|CBK82163.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Coprococcus sp. ART55/1] Length = 230 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 32/222 (14%), Positives = 84/222 (37%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + DG + + D+ ++ L Sbjct: 4 ILIVEDDSFLNKMLDYNLTADGYGVTSALNARTAAEAIRQREFDLVLLDINL--PDGNGF 61 Query: 62 ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH---REILARVAAIYR 117 EL ++I H +I ++ + ++ G D + KP + + + A+ Sbjct: 62 ELCKLIKPQHPDTIVIFLTANDQESDQIRGYEVGAVDYITKPFVIGALQRKIKAMFAMLE 121 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 K + + + G + + + + G+ L E ++L N + + + Q+ + Sbjct: 122 HHKPAKDIYDDGRLFLDFSEQTASLNGKPLTLSPMEYKMLNLFRKNPRQVLTRGQLLEKL 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 + + + V+E+ + + IS++R K+ G + + +GY Sbjct: 182 WDIDERFVDEHTLTTSISRIRSKIEADGGAPYIKTVYGMGYQ 223 >gi|295700958|ref|YP_003608851.1| transcriptional regulator [Burkholderia sp. CCGE1002] gi|295440171|gb|ADG19340.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1002] Length = 225 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 48/219 (21%), Positives = 92/219 (42%), Gaps = 4/219 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D A + G +++ L + DV ++ L Sbjct: 3 ILVIEDEAKTSAYLKKGLEESGYTVDIAADGAEGLILAKESEYDVIVLDVML--PSIDGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + +RA P++ ++ + + + G DD + KP E+LARV + RR Sbjct: 61 TVLKTLRATQTTPVLFLTARDDVSDRVKGLELGADDYLVKPFAFVELLARVRTLARRGPP 120 Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 N T V R + G+ L +E +L+ L+ +G+ + +TQI S ++ + Sbjct: 121 RENDVLTLGDLEVDVTRRRVKRGGKRIDLTPKEFSLLQLLVRRQGEVLTRTQIASYVWDM 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 + + NVVE I +LR K+ + + + R +GY Sbjct: 181 -NFDSDTNVVEVAIRRLRGKVDDDFPVKLIHTVRGVGYV 218 >gi|225626512|ref|ZP_03784551.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella ceti str. Cudo] gi|225618169|gb|EEH15212.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella ceti str. Cudo] Length = 255 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 42/224 (18%), Positives = 88/224 (39%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++D + +G ++ + E + D+ ++ L G + Sbjct: 34 IAVVEDEEALSVLLRYNLEAEGYQVDTMLRGDEAEIALRESVPDLLILDWML--PGVSGI 91 Query: 62 ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIY 116 EL R +R + P+I ++ + G DD V KP E+ + Sbjct: 92 ELCRRLRQRPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKAMLRR 151 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + ++ + G + + + + L E R+LEY M + G+ +++Q+ Sbjct: 152 ANPSILSHVLKVGDLLLDRQQHRVYRKEKEVHLGPTEFRLLEYFMMSPGRVFSRSQLLDG 211 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G D V++ V+ H+ +LRK + D + + R GYS Sbjct: 212 VWG-PDIYVDDRTVDVHVGRLRKVINVGRAADSIRTVRGAGYSF 254 >gi|160881990|ref|YP_001560958.1| two component transcriptional regulator [Clostridium phytofermentans ISDg] gi|160430656|gb|ABX44219.1| two component transcriptional regulator, winged helix family [Clostridium phytofermentans ISDg] Length = 229 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 43/227 (18%), Positives = 85/227 (37%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A + + G ++ N+ + + + ++ L Sbjct: 4 ILIVEDEAAIAELEKDYLELSGFEVDIENTGDKGLAAALTGDYKLIILDLML--PNVDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 E+ + +R +P+I +S + G DD + KP E++ARV A R Sbjct: 62 EICKRVREEKNIPVIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARYER 121 Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N E I++ R V GE +E +L +L N K ++F Sbjct: 122 LIGTGMKENEMIEIRGIKIDKTARRVYVNGEERAFTTKEFDLLTFLAQNPNHVYTKEELF 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 I+ + + + V HI K+R+K+ +++ +GY Sbjct: 182 QEIWDM-ESIGDIATVTVHIKKIREKIEANTSKPQYIETIWGVGYRF 227 >gi|15805807|ref|NP_294505.1| response regulator [Deinococcus radiodurans R1] gi|6458493|gb|AAF10359.1|AE001933_3 response regulator, OmpR/PhoB family [Deinococcus radiodurans R1] Length = 222 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 44/219 (20%), Positives = 87/219 (39%), Gaps = 4/219 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D + G + D+ ++ L Sbjct: 5 ILLIEDNPDITRVVQYELEQAGYRVITAPDGITGLTSARENTPDLVILDLGL--PDFDGA 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R S VP+I ++ ++ ++ ++G DD + KP H E++ARV R + Sbjct: 63 EVARRLRKTSSVPIIILTAMDAIDRKVNLLEAGADDYMTKPFHPEELVARVKVQLRHQQH 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 R G L +E +L +L G+ ++ +I ++ Sbjct: 123 GEVITIGALEIH-PQKRLCSYNGHEVRLSPKEFDLLTFLARQPGRVYSRQEIEREVW-NG 180 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + NVV+ H++ +R KLR+ G+ + + R +GY++ Sbjct: 181 ELPSNSNVVDVHMANMRAKLRDLDGYGVIRTVRGIGYAL 219 >gi|332093078|gb|EGI98142.1| transcriptional activator protein irlR [Shigella boydii 5216-82] Length = 223 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 50/219 (22%), Positives = 97/219 (44%), Gaps = 3/219 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D ++ + G ++ + +L + ++ L G Sbjct: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIML--PGMDGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + +R Q P+I ++ S+ + DSG +D + KP E+LARV A R+ Sbjct: 61 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 N+ E +R+ S + L R+E ++L L + G+ + +T I S I+G+ Sbjct: 121 LNSTLEISGLRMDSVSQSVSRDNICITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 179 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + N V+ I +LR K+ + + + R +GYS Sbjct: 180 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 >gi|327404313|ref|YP_004345151.1| winged helix family two component transcriptional regulator [Fluviicola taffensis DSM 16823] gi|327319821|gb|AEA44313.1| two component transcriptional regulator, winged helix family [Fluviicola taffensis DSM 16823] Length = 223 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 42/223 (18%), Positives = 93/223 (41%), Gaps = 11/223 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ +G + + + + + D+ ++ G + Sbjct: 4 ILIVDDEEDIREILGYNLKKEGFKVFLAENGQTGISICKEEKPDLVILDVM--MPGMDGI 61 Query: 62 ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYR 117 E+ IR V + ++ + + D+G DD ++KPI R +++RV A + R Sbjct: 62 EVCDQIRNTKGLENVLICFLTARNEDYSQIAGLDAGADDYISKPIKPRVLISRVHALLRR 121 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + V T + + + GE LP++E +L L + + I + Sbjct: 122 KESVQAKPTGTPDLVINREKYLVIKNGETLHLPKKEFELLSLLASRPEVVFERDLILERV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G D V + ++ H+ KLR+K+ + D + + + +GY Sbjct: 182 WGT-DIIVGDRTIDVHVRKLREKIGD----DYIQTVKGIGYKF 219 >gi|308270767|emb|CBX27377.1| Response regulator mprA [uncultured Desulfobacterium sp.] Length = 234 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 49/222 (22%), Positives = 95/222 (42%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +F + ++E E A D+ ++ L Sbjct: 12 ILIVDDEHSLLKQLQQIFENQRYTVETATDGEEAFDKLFEAPFDLIILDIM--MPKIDGL 69 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119 + + IR P++ ++ ++ + D G DD + KP E++ARV A R Sbjct: 70 AVLQEIRKSGIKTPVLMLTAKGDVEDKIKGLDLGADDYLPKPFSSDELMARVRALFRRSG 129 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + + +++ + RD G+ L RE ILE+L+ N+ + V++ + ++G Sbjct: 130 GQTESVLQVFDLKLDTVTRDVTKDGKPVELTPREFSILEFLLYNKNRVVSRFSLAEHVWG 189 Query: 180 L-FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 FD N ++ HI LR K+ N + + R +GY I Sbjct: 190 DAFDPFSMSNFMDVHIKNLRHKIENFDNNRIIQTIRGVGYII 231 >gi|210610542|ref|ZP_03288468.1| hypothetical protein CLONEX_00658 [Clostridium nexile DSM 1787] gi|210152401|gb|EEA83407.1| hypothetical protein CLONEX_00658 [Clostridium nexile DSM 1787] Length = 230 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 32/222 (14%), Positives = 83/222 (37%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + DG + + D+ ++ L Sbjct: 4 ILIVEDDSFLNKMVAYNLTADGYGVTSALNARTAADAIRQREFDLVLLDINL--PDGNGF 61 Query: 62 ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH---REILARVAAIYR 117 EL ++I H +I ++ + ++ G D + KP + + + A+ Sbjct: 62 ELCKLIKPQHPDTIVIFLTANDQESDQIRGYEVGAVDYITKPFVIGALQRKIKAMFAMLE 121 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 K + + + G + + + + G+ L E ++L N + + + Q+ + Sbjct: 122 HHKPAKDIYDDGRLFLDFSEQTASLNGKPLTLSPMEYKMLNLFRKNPRQVLTRGQLLEKL 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 + + + V E+ + + IS++R K+ G + + +GY Sbjct: 182 WDIDERFVNEHTLTTSISRIRSKIEADGGAPYIKTVYGMGYQ 223 >gi|254425350|ref|ZP_05039068.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] gi|196192839|gb|EDX87803.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] Length = 243 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 42/230 (18%), Positives = 84/230 (36%), Gaps = 11/230 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ +D + + + + +A + + + ++ Sbjct: 10 ILIAEDDERTRTALVKSLEAADYIVIAAADGQAALQCFQTASDIIDLVVLDVMMPKLDGF 69 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112 ++ + +RA S VP+I + S + + G +D + KP +E A Sbjct: 70 QVCQRLRATSNVPIIMATVLGSSSDRVTGLEIGANDYIVKPFSTKELIARIRSILRRAAR 129 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + V + E G + S R ++G L E R++E L + G ++ Sbjct: 130 RQEHVSGVVHRSAIEIGQFVIDSSTRRAYIEGHNLRLTEIEFRLIELLASRPGHIFSRGD 189 Query: 173 IFSAIYGLF-DEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220 I A++G + A + V+ HIS+LR KL + + R GY Sbjct: 190 ILEALWGYDANSAADTKTVDVHISRLRIKLNETTHNPKYIVTIRGRGYMF 239 >gi|187777045|ref|ZP_02993518.1| hypothetical protein CLOSPO_00590 [Clostridium sporogenes ATCC 15579] gi|187773973|gb|EDU37775.1| hypothetical protein CLOSPO_00590 [Clostridium sporogenes ATCC 15579] Length = 228 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 33/224 (14%), Positives = 86/224 (38%), Gaps = 9/224 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++ + + + E + +V ++ L G L Sbjct: 4 ILIVEDEPSIRGFVKVNLKMNNFDVIEAETGEEGVEKAREHKPEVVILDIML--PGMDGL 61 Query: 62 ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH----REILARVAAIY 116 E+ +I+ + + + +I ++ + + G DD + KP + I A + + Sbjct: 62 EVCKILRQEFTNMGIIMLTAKSQDTDKVLGLEYGADDYIIKPFNPLELTLRIKAILRRVN 121 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + +N GP ++ + E + E +++ + N GK + ++ Sbjct: 122 AVKENDDNIITGGPFKIDLYSKKIYKDEEEIDITPTEYLLMKIFIENPGKAFNRDELLDL 181 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYS 219 ++G +D + +V+ +I +LR K+ +++ GY Sbjct: 182 VWG-YDFMGDSKIVDVNIRRLRSKIEETPSEPKFINTVWGTGYR 224 >gi|168704604|ref|ZP_02736881.1| phosphate regulon response regulator PhoB [Gemmata obscuriglobus UQM 2246] Length = 236 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 48/226 (21%), Positives = 91/226 (40%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + F +G + +A DV ++ L G L Sbjct: 6 ILIIEDERGLTQTLTWYFNKEGYEVTVSGDGLEGLRKAQTALPDVVLLDLNL--PGMNGL 63 Query: 62 ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AI 115 ++ R +RA +P+I I+ + + G DD V KP +++ +L +V Sbjct: 64 DVCRELRAGERTRDIPIIMITAKTDETDQVVGYSLGADDYVGKPFNNKILLHKVKALLRR 123 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + + +++ + E L E R+LE L+ G+ ++ Q+ Sbjct: 124 AQGQSEPGDVTDYSGVKIDRVRHRVTFEEEALDLTPTEFRLLECLVRQPGRAFSRKQLME 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 A G + V E ++ HI LR+KL G D +++ R +GY Sbjct: 184 AAIG-DNSIVLERTIDVHIKTLRQKLTKAGGSADLIETVRSIGYRF 228 >gi|149195677|ref|ZP_01872734.1| response regulator receiver domain protein (CheY-like) [Lentisphaera araneosa HTCC2155] gi|149141139|gb|EDM29535.1| response regulator receiver domain protein (CheY-like) [Lentisphaera araneosa HTCC2155] Length = 229 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 37/225 (16%), Positives = 81/225 (36%), Gaps = 10/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61 +++DD +++ G +G + + + D+ ++ L G + Sbjct: 6 LVVDDEPDIQELLKLTLGKEGYDVICTGDGSKAIKMTETHAPDLIILDGMLPGMDGNDIC 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR------EILARVAAI 115 + ++ + +P+I +S + G DD + KP + + AA Sbjct: 66 YRLKNDKSTANIPIIMLSARTDETDQIIGIRLGADDYITKPFSPKVLSAKVSATIKRAAQ 125 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + L + + + + + L E +L +L G+ + +I Sbjct: 126 NKDLSHDEDILRHEKLVMNKADFSITYEEQPVKLTAVEYNLLYFLCKKPGRVYTRERILE 185 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I G D + V+ HI LR+K+ +++ R +GY I Sbjct: 186 EIRG-DDVIITGRTVDVHILSLRRKI--PGFESYIETVRGVGYRI 227 >gi|256396695|ref|YP_003118259.1| two component transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256362921|gb|ACU76418.1| two component transcriptional regulator, winged helix family [Catenulispora acidiphila DSM 44928] Length = 228 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 45/219 (20%), Positives = 88/219 (40%), Gaps = 5/219 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + +G + + + D+ ++ L G ++ Sbjct: 9 LIVDDDIALSEMLGIALRGEGFETTSVADGDRALQVFRDFKPDLVLLDLML--PGRDGID 66 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R+IR S VP+I ++ + +SG DD V KP +E++ARV A RR Sbjct: 67 VCRLIRGESGVPIIMLTAKSDTVDVVVGLESGADDYVIKPFKVKELVARVRARLRRADEP 126 Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + G + +G PL E +L L + + + ++G + Sbjct: 127 KPETLAIGDLSIDVAGHSVKREGRQIPLTPLEFDLLVALARKPWQVFTREVLLEQVWG-Y 185 Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219 A + +V H+ +LR K+ + + V + R +GY Sbjct: 186 RHAADTRLVNVHVQRLRSKIEVDPENPEIVVTVRGVGYK 224 >gi|296122126|ref|YP_003629904.1| response regulator receiver [Planctomyces limnophilus DSM 3776] gi|296014466|gb|ADG67705.1| response regulator receiver [Planctomyces limnophilus DSM 3776] Length = 230 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 40/223 (17%), Positives = 87/223 (39%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D ++ A ++G + + E + S+ D+ ++ L Sbjct: 8 ILIIEDEQPIRRFLKASLSNEGYRVSEAVAGEEGLRMASAQPPDLVILDLGL--PDLDGQ 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118 ++ + +R P+I +S + DSG DD + KP E + R Sbjct: 66 DVLKRLREWYTSPVIVLSARDQETQKIKALDSGADDYLTKPFGIGELLARMRTAMRHAHR 125 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + A G +RV R + L E ++L ++ + GK + + ++ Sbjct: 126 VGPEATTATIGALRVDLAARLVYRSDKEVHLTPLEYKLLVTMIKHAGKVLTHRFLLREVW 185 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 G D E + + I+ +R+KL + + +++ +GY + Sbjct: 186 GPQDSQ-ENHYLRVFIASMRRKLEDDPARPRYILTEQGVGYRL 227 >gi|213498008|emb|CAR92187.1| PhoB protein [Serratia sp. ATCC 39006] Length = 229 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 37/224 (16%), Positives = 91/224 (40%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A +++ + +G + + ++ ++ L G L Sbjct: 5 ILVVEDEAPIREMVCFVLEQNGYQPVEAEDYDSAINQLTEPYPELVLLDWML--PGGSGL 62 Query: 62 ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 + + ++ +P++ ++ + + + G DD + KP +E++AR+ A+ RR Sbjct: 63 QFIKHMKRETLTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRR 122 Query: 119 LKVS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + E + + + E ++L + M + + ++ Q+ + Sbjct: 123 ISPMAVDEVIEMRGLSLDPSSHRVTTDEYALDMGPTEFKLLHFFMTHSERVYSREQLLNH 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + VE+ V+ HI +LRK L V + R GY Sbjct: 183 VWGT-NVYVEDRTVDVHIRRLRKALETSGHDKMVQTVRGTGYRF 225 >gi|220909111|ref|YP_002484422.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 7425] gi|219865722|gb|ACL46061.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7425] Length = 263 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 48/228 (21%), Positives = 91/228 (39%), Gaps = 9/228 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++IDD + + G + + L D+ ++ L G V Sbjct: 5 ILVIDDDPAIAELVAINLEMAGYDVSQAADGVKGQALAVQLMPDLIMLDLMLPRVDGFTV 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R S +P++ ++ Q ++ F++G DD + KP E+LARV A+ RR Sbjct: 65 CQRLRRDERTSAIPILMLTALSQTQDKVEGFNAGADDYLTKPFEIEEMLARVRALLRRTD 124 Query: 121 VSNNRAETGPIRVF------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 A+ I + + + +V L R E +L L+ G+ VA ++I Sbjct: 125 RIPQAAKHSEILSYGPLTLIPERFEVVWLDKVIKLTRLEFELLHCLLQRHGQTVAPSEIL 184 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 ++G +D + + H+ LR KL + + + GY ++ Sbjct: 185 KEVWG-YDPDDDIETIRVHVRHLRTKLEPDPRHPRYIKTVYGAGYCLE 231 >gi|170761752|ref|YP_001787320.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] gi|169408741|gb|ACA57152.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] Length = 229 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 48/227 (21%), Positives = 87/227 (38%), Gaps = 9/227 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + F D G + ++ D+ I ++ Sbjct: 5 ILIVDDEDDIVSFIKDYFEDQGYRVITASNGREAIEYCDK---DIDIILLDIMMPNIDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + IR P+I +S S + G DD + KP +E+ ARV A RR K Sbjct: 62 QICQKIRDKVSCPIIFLSARQSEVDKIKGLSVGGDDYIVKPFSIKELKARVQAHLRREKR 121 Query: 122 SNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + R + E +E I+E L + + +K QI+ + Sbjct: 122 VPLNNRSKISFEKLTLDINSRKVHYEEEEILFTAKEFDIIELLALHPEQVFSKEQIYEKV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDWN 223 +G +D + N V HI K+R KL + + + + +GY + N Sbjct: 182 WG-YDAEGDANTVAEHIKKIRAKLIKRNASLNHIATVWGVGYRWEKN 227 >gi|118479940|ref|YP_897091.1| two-component response regulator [Bacillus thuringiensis str. Al Hakam] gi|196043892|ref|ZP_03111129.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|225866817|ref|YP_002752195.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|228948563|ref|ZP_04110842.1| Two-component response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229187082|ref|ZP_04314231.1| Two-component response regulator [Bacillus cereus BGSC 6E1] gi|118419165|gb|ABK87584.1| two-component response regulator [Bacillus thuringiensis str. Al Hakam] gi|196025228|gb|EDX63898.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|225790943|gb|ACO31160.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|228596391|gb|EEK54062.1| Two-component response regulator [Bacillus cereus BGSC 6E1] gi|228811062|gb|EEM57404.1| Two-component response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 229 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 51/229 (22%), Positives = 89/229 (38%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++++ F + + + + D+ ++ L Sbjct: 5 ILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIML--PELDGW 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR-------EILARVAA 114 + R IR S+VP+I ++ TL F+ G DD V KP +L Sbjct: 63 SVCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKV 122 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + L+ ++ I V R V L E IL Y M N+G + + Q+ Sbjct: 123 TKQLLENEDDTLSIHGIHVHFPSRTVTVDRTDINLTHTEFEILAYFMRNQGIVLTREQLI 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 S I+G ++ A ++ V SHI LR KL K + + GY + N Sbjct: 183 SRIWG-YEFAGDDRTVNSHIRNLRNKLGEK--AKYITTVVRTGYKFEGN 228 >gi|320093788|ref|ZP_08025635.1| DNA-binding response regulator [Actinomyces sp. oral taxon 178 str. F0338] gi|319979289|gb|EFW10785.1| DNA-binding response regulator [Actinomyces sp. oral taxon 178 str. F0338] Length = 238 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 50/222 (22%), Positives = 92/222 (41%), Gaps = 10/222 (4%) Query: 6 DDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPR 65 DD ++ G+S + L + DV ++ L G +E+ R Sbjct: 16 DDEPVLSGTVKNYLERAGMSAQTCGDGLAALDLVRATAPDVVVLDLGL--PGMDGVEVCR 73 Query: 66 IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK----- 120 +R S ++ ++ L G DD + KP RE++AR+ + RR + Sbjct: 74 QLRTFSDCYVLMLTARADEVDKLIGLSVGADDYMTKPFSPRELVARIQVLLRRPRAGSTG 133 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + G + + R E+ L R E +L+ L + G + + Q+ A++G Sbjct: 134 ATAAVVHRIGALTLDPSSRRVELDASPVELTRTEFDLLQALAEHPGWVLNRRQLTDAVWG 193 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 D ++++V+ HI+ LRKKL + V + R +GY + Sbjct: 194 E-DWVGDDHLVDVHIAHLRKKLGDDPSQPRFVQTVRGVGYRM 234 >gi|258651433|ref|YP_003200589.1| winged helix family two component transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258554658|gb|ACV77600.1| two component transcriptional regulator, winged helix family [Nakamurella multipartita DSM 44233] Length = 240 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 47/220 (21%), Positives = 91/220 (41%), Gaps = 14/220 (6%) Query: 12 KDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHS 71 ++ DG + L S D+ ++ L G L++ R +R S Sbjct: 16 REVLRRYLTRDGHDVLEAADGPTGLRLVRSHHPDLIVLDLML--PGMDGLQVCREVRRTS 73 Query: 72 QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPI 131 VP+I ++ + + G DD V KP RE+ RV+ + +R + A G Sbjct: 74 TVPVIMLTALGQESDRVVGLEFGADDYVVKPFSPRELALRVSRVLQRSRGPAAPAAPGSA 133 Query: 132 RV---------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 V + R G+ L RE +L +L+A+ G+ ++T++ ++G Sbjct: 134 EVTSADGELSANALSRTARRGGDELALTSREFDLLHFLLAHPGQVFSRTELMEQVWGW-- 191 Query: 183 EAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 +++ V H+ +LR+K+ + + + +GY +D Sbjct: 192 SFGDQSTVTVHVRRLREKVEPDPTKPTRIVTVWGVGYRLD 231 >gi|187926390|ref|YP_001892735.1| two component transcriptional regulator, winged helix family [Ralstonia pickettii 12J] gi|241665877|ref|YP_002984236.1| transcriptional regulator [Ralstonia pickettii 12D] gi|187728144|gb|ACD29308.1| two component transcriptional regulator, winged helix family [Ralstonia pickettii 12J] gi|240867904|gb|ACS65564.1| two component transcriptional regulator, winged helix family [Ralstonia pickettii 12D] Length = 219 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 45/222 (20%), Positives = 85/222 (38%), Gaps = 5/222 (2%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 M ++I+D + E ++ ++ L G+ Sbjct: 1 MILIIEDEPKLAALMTDYLRAAHYETEWLADGTHAAQRIRETAPELVLLDLML--PGKDG 58 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R +RA S+VP++ ++ L + G DD V KP RE+ R Sbjct: 59 LEICREVRAFSEVPIVMVTARVEEIDRLLGLELGADDYVCKPFSPREL-VARIKTILRRV 117 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + + ++G+ L E R+L L G+ ++++ + IY Sbjct: 118 QRGGGVPESALHIDAAAYAATLRGQRLDLTPVEFRLLAALAGAPGRILSRSNLLEQIYDD 177 Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 V + V++HI LR+K+ G + + S +GY +D Sbjct: 178 H-RIVTDRTVDTHIKNLRRKMEQVSPGTEMIHSVYGVGYRLD 218 >gi|116625746|ref|YP_827902.1| two component transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116228908|gb|ABJ87617.1| two component transcriptional regulator, winged helix family [Candidatus Solibacter usitatus Ellin6076] Length = 235 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 46/222 (20%), Positives = 90/222 (40%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD ++D + + +G + + D+ ++ L G Sbjct: 15 ILVIDDDESLRDTIVVMLEQEGFRAVQAGDGRDGFEKAITTKPDLVLVDLRL--PGMSGT 72 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119 E+ + +RA P+I +S + + G DD V KP RE+ AR+ A+ R Sbjct: 73 EICKQLRAARVATPIIVLSAMDDELDKVLLLEIGADDYVVKPFGTRELTARIRAVLRRAS 132 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + V + R + +GE L E +L Y + N + + + I ++++G Sbjct: 133 TDARKVMHFSEVEVDFERRVVKRKGEDLKLTPAEYNLLTYFLHNPDRPLTRDMILNSVWG 192 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 ++ V++H+ KLR+KL + +GY Sbjct: 193 -YEFFPNTRTVDAHVVKLRQKLEPDPNTPKHFLTVHGVGYRF 233 >gi|332088374|gb|EGI93492.1| transcriptional regulatory protein baeR [Shigella boydii 5216-82] Length = 240 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 43/224 (19%), Positives = 88/224 (39%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + I + + + D+ ++ L G L Sbjct: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVCQTPPDLILLDLML--PGTDGL 70 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 L R IR S +P++ ++ L + G DD + KP RE++ARV + Sbjct: 71 TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + P+ + +G++ L E R+L+ L GK ++ + + +Y Sbjct: 131 QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREHLLNHLY 190 Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + V + ++SHI LR+KL + + + +GY + Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 >gi|325291259|ref|YP_004267440.1| two component transcriptional regulator, winged helix family [Syntrophobotulus glycolicus DSM 8271] gi|324966660|gb|ADY57439.1| two component transcriptional regulator, winged helix family [Syntrophobotulus glycolicus DSM 8271] Length = 228 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 48/222 (21%), Positives = 95/222 (42%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + +G ++E + ++ D+ ++ L + Sbjct: 5 ILVIEDEVKIARFLELELTYEGYAVEVAHDGRSGYEKAAAGNVDLIILDLML--PELSGI 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R S VP+I ++ + + DSG DD + K E+LAR+ I +R Sbjct: 63 EVCRRVRKESDVPIIMLTAKDDVSDKVMGLDSGADDYMTKSFAIEELLARIRVILKRKSK 122 Query: 122 SNNRAETGPIRVF---SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + D +G+ L ++E +L+YLM N+G +++ +I ++ Sbjct: 123 KEGSSAVIAAGRLVLLRDEHRVTFEGKEISLSKKEFELLKYLMENKGIVLSREKILDHVW 182 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G +D + NV + +I LR K+ K + + R +GY Sbjct: 183 G-YDYYGDTNVTDVYIKYLRNKIDQKFDVRFIHTVRGVGYIF 223 >gi|295398526|ref|ZP_06808560.1| response regulator [Aerococcus viridans ATCC 11563] gi|294973249|gb|EFG49042.1| response regulator [Aerococcus viridans ATCC 11563] Length = 255 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 36/252 (14%), Positives = 88/252 (34%), Gaps = 35/252 (13%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + +G + + L + + D ++ L ++ Sbjct: 5 LIVDDEQSILTLLKYSLEKEGYEVIQAEDGQTGLELAMNHQLDFIILDLML--PKMDGMD 62 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH---------------- 105 + + +R + P++ ++ + + G DD + KP Sbjct: 63 VCKNLRQNKINTPILMLTAKDDELEKIIGLELGADDYMTKPFSPREVLARMKAILRRATY 122 Query: 106 --------------REILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPR 151 +I ++ + G I + + V+GE + Sbjct: 123 SVSSVDAENGVEEKHKITLTKDSVGNFKDEDVEIIKAGDIEIHVNDYVVYVRGESIEMTP 182 Query: 152 RERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPV 210 +E +L Y+ + +++ Q+ ++ FD A E +V+ H+S LR+K+ + + + Sbjct: 183 KEFELLTYMARRVNRTLSREQLLQKLW-RFDYAGETRIVDVHVSHLREKIELDTKNPEYI 241 Query: 211 DSKRFLGYSIDW 222 + R GY + Sbjct: 242 ITVRGFGYKFEV 253 >gi|227873737|ref|ZP_03991967.1| response regulator [Oribacterium sinus F0268] gi|227840417|gb|EEJ50817.1| response regulator [Oribacterium sinus F0268] Length = 233 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 47/228 (20%), Positives = 89/228 (39%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A + + G +E E D+ ++ L G Sbjct: 7 ILIVEDEASIAELEKDYLELSGFQVETEGDGEKGLKKALEGNYDLLILDLML--PGRDGF 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + +R+ +P++ +S + G DD + KP E++ARV A R Sbjct: 65 SITQEVRSKKDIPILLVSARRDDIDKIRGLGLGADDYMTKPFSASELVARVKAHLARYTR 124 Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N E +++ + R V GE P RE +L +L A+ + K ++F Sbjct: 125 LRDSGKEENEIIEIRGLKIDTTARRVFVNGEEVPFTSREFDLLAFLAAHPNRVYTKEELF 184 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL--RNKLGFDPVDSKRFLGYSI 220 I+ + + V HI KLR+K+ N + +++ +GY Sbjct: 185 QEIW-KMESIGDIATVTVHIKKLREKIEMENAVKPQYIETIWGVGYRF 231 >gi|210616118|ref|ZP_03290951.1| hypothetical protein CLONEX_03170 [Clostridium nexile DSM 1787] gi|210149938|gb|EEA80947.1| hypothetical protein CLONEX_03170 [Clostridium nexile DSM 1787] Length = 226 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 42/222 (18%), Positives = 84/222 (37%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D + +G ++ L S + ++ L Sbjct: 4 ILLIEDDEHIAQSIQFFLEGEGFQIKVAAMARQAMELLKSEDFQLVILDVTL--PDGNGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118 EL I+A ++P+I ++ + + F+ G D+ + KP RE + V Sbjct: 62 ELFEEIKARKELPVIFLTALDGEEEIVKGFELGADEYITKPFRPRELLSRIRNVIRHTGI 121 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 L+ + + +++ + E L E +IL N+G+ + + QI S I+ Sbjct: 122 LEENRQEIQIEHVKMNLEQGAVYKNNERIELTALEYKILALFFENKGRILTRGQILSGIW 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219 V N + +I +LR+K+ + + R +GY Sbjct: 182 DESGNFVNNNTLTVYIKRLREKIEEDPNAPKIIKTVRGMGYK 223 >gi|164520366|gb|ABY60238.1| PhoP [Listeria monocytogenes] gi|164520368|gb|ABY60239.1| PhoP [Listeria monocytogenes] gi|164520370|gb|ABY60240.1| PhoP [Listeria monocytogenes] gi|164520374|gb|ABY60242.1| PhoP [Listeria monocytogenes] gi|164520376|gb|ABY60243.1| PhoP [Listeria monocytogenes] gi|164520382|gb|ABY60246.1| PhoP [Listeria monocytogenes] gi|164520384|gb|ABY60247.1| PhoP [Listeria monocytogenes] gi|164520388|gb|ABY60249.1| PhoP [Listeria monocytogenes] gi|164520394|gb|ABY60252.1| PhoP [Listeria monocytogenes] gi|164520398|gb|ABY60254.1| PhoP [Listeria monocytogenes] gi|164520400|gb|ABY60255.1| PhoP [Listeria monocytogenes] gi|164520402|gb|ABY60256.1| PhoP [Listeria monocytogenes] gi|164520406|gb|ABY60258.1| PhoP [Listeria monocytogenes] gi|164520408|gb|ABY60259.1| PhoP [Listeria monocytogenes] gi|164520414|gb|ABY60262.1| PhoP [Listeria monocytogenes] gi|164520416|gb|ABY60263.1| PhoP [Listeria monocytogenes] gi|164520418|gb|ABY60264.1| PhoP [Listeria monocytogenes] gi|164520422|gb|ABY60266.1| PhoP [Listeria monocytogenes] gi|164520434|gb|ABY60272.1| PhoP [Listeria monocytogenes] gi|164520440|gb|ABY60275.1| PhoP [Listeria monocytogenes] Length = 233 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 47/232 (20%), Positives = 95/232 (40%), Gaps = 16/232 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD A + G + L S + D+ ++ L +E Sbjct: 2 LVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLML--PEMDGIE 59 Query: 63 LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + +R VP++ ++ + + G DD + KP RE++AR+ AI RR + Sbjct: 60 VTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTEG 119 Query: 122 SNNRAETGPIR-----------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 E + D + +Q ++ L +E +L +L +RGK ++ Sbjct: 120 KAEIIEEITEDSEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFSR 179 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 Q+ ++ +D E +V+ H+S LR K+ + + + R GY ++ Sbjct: 180 DQLLDTVW-NYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKME 230 >gi|161986515|ref|YP_310926.2| transcriptional regulatory protein YedW [Shigella sonnei Ss046] gi|323168911|gb|EFZ54591.1| transcriptional activator protein irlR [Shigella sonnei 53G] Length = 223 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 50/219 (22%), Positives = 97/219 (44%), Gaps = 3/219 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D ++ + G ++ + +L + ++ L G Sbjct: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIML--PGMDGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + +R Q P+I ++ S+ + DSG +D + KP E+LARV A R+ Sbjct: 61 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 N+ E +R+ S + L R+E ++L L + G+ + +T I S I+G+ Sbjct: 121 LNSTLEISGLRMDSVSQSVSRNNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 179 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + N V+ I +LR K+ + + + R +GYS Sbjct: 180 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 >gi|310658660|ref|YP_003936381.1| two-component response regulator yycf [Clostridium sticklandii DSM 519] gi|308825438|emb|CBH21476.1| Two-component response regulator yycF [Clostridium sticklandii] Length = 228 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 46/223 (20%), Positives = 85/223 (38%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD L+ G G ++ S D+ ++ L Sbjct: 4 ILVVDDEPLIVKGLKFSLEQGGHIIDTSFDGNDALENIKSKDYDIILLDLMLPI--IDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 E+ + +R S VP+I +S + + + G DD + KP + E+ ARV + Sbjct: 62 EVCKKVRETSDVPIIILSAKGEDISKIKGLEIGADDYITKPFNIMELKARVNAILRRMEK 121 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 K + G I + R E L +E +L LM N K ++ + ++ Sbjct: 122 SKKIVAQKHLGDITLNYLDRKVTRNSEEINLTSKEFDLLFLLMDNPNKVFSREALLEKVW 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220 ++ + V+ HI KLR+K+ + + +K GY Sbjct: 182 -KYEHFGDLRTVDVHIRKLREKIEDNSSNPVHIMTKWGEGYYF 223 >gi|317133437|ref|YP_004092751.1| two component transcriptional regulator, winged helix family [Ethanoligenens harbinense YUAN-3] gi|315471416|gb|ADU28020.1| two component transcriptional regulator, winged helix family [Ethanoligenens harbinense YUAN-3] Length = 226 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 44/227 (19%), Positives = 85/227 (37%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ G +G + + D ++ Sbjct: 4 ILIVDDETNIRAGLREYAEFEGHEVTEAGDGMEAVTICREQDFDAIIMDVM--MPKLDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL------ARVAAI 115 + IR +P++ +S L F+ GVDD V KP +E++ Sbjct: 62 SACKEIRKTKDIPVLMLSARGEEYDKLFGFEVGVDDYVVKPFSPKEVMARLRVIISRNRQ 121 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + + V GR V G+ L +E +L YL+ NR +++ Q+ Sbjct: 122 HLQNGGPMQTFRHDGLVVDLAGRSVMVDGQKAELTPKETDLLFYLVQNRNLALSRAQLLQ 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 ++G +D ++ V++HI LR L D + + R +GY + Sbjct: 182 DVWG-YDFYGDDRTVDTHIKMLRSSLGKY--KDAIVTLRGVGYKFEV 225 >gi|284040445|ref|YP_003390375.1| transcriptional regulator [Spirosoma linguale DSM 74] gi|283819738|gb|ADB41576.1| two component transcriptional regulator, winged helix family [Spirosoma linguale DSM 74] Length = 235 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 36/222 (16%), Positives = 84/222 (37%), Gaps = 9/222 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61 +++DD A + + +G + + + ++ ++ + G + Sbjct: 14 LVVDDDADILEMLEYNLSKEGYDVRTATDGRKALEVARTYMPELVLLDIMMPHLDGIEAG 73 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH---REILARVAAIYRR 118 R I Q ++ ++ + + FD G DD + KPI + + + Sbjct: 74 RQLRDIPELRQTYILYLTARSEEYSEVAAFDVGADDYITKPIKPRALMSRINALFRREAQ 133 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + + + + LP++E +L +L + K ++ ++ I+ Sbjct: 134 KADPGEQIQIADLLINRKNYSVSQNDKQVILPKKEFELLFFLAQHPNKVCSREELLQKIW 193 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G D V E V+ HI KLR+K+ + + + + +GY Sbjct: 194 GA-DIYVLERTVDVHIRKLREKIGDT----HIRTLKGVGYMF 230 >gi|58336426|ref|YP_193011.1| response regulator [Lactobacillus acidophilus NCFM] gi|227902981|ref|ZP_04020786.1| DNA-binding response regulator [Lactobacillus acidophilus ATCC 4796] gi|58253743|gb|AAV41980.1| putative response regulator [Lactobacillus acidophilus NCFM] gi|227869224|gb|EEJ76645.1| DNA-binding response regulator [Lactobacillus acidophilus ATCC 4796] Length = 238 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 45/229 (19%), Positives = 91/229 (39%), Gaps = 15/229 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G ++ E D+ ++ L + L Sbjct: 5 ILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVDEYDPDLMILDLML--PKKDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R +P+I ++ + + + G DD V KP +RE++ARV A RR + Sbjct: 63 EVAREVRQTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRDI 122 Query: 122 SNNRAETGPIRVFSD-----------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + E G+ L RE +L YL + G+ + + Sbjct: 123 VKKAEAANQEEPDKNIKIGNLVIMPDAYIVEKNGKKIELTHREFELLYYLAQHMGQVMTR 182 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGY 218 + ++G +D + V+ + +LR+K+ + + ++R +GY Sbjct: 183 EHLLQTVWG-YDYFGDVRTVDVTVHRLREKIEDNPIQPQILVTRRGVGY 230 >gi|320532177|ref|ZP_08033046.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 171 str. F0337] gi|320135603|gb|EFW27682.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 171 str. F0337] Length = 238 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 50/222 (22%), Positives = 92/222 (41%), Gaps = 10/222 (4%) Query: 6 DDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPR 65 DD ++ G+S + L + DV ++ L G +E+ R Sbjct: 16 DDEPVLSGTVKNYLERAGMSAQTCGDGLAALDLVRATAPDVVVLDLGL--PGMDGVEVCR 73 Query: 66 IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK----- 120 +R S ++ ++ L G DD + KP RE++AR+ + RR + Sbjct: 74 QLRTFSDCYVLMLTARADEVDKLIGLSVGADDYMTKPFSPRELVARIQVLLRRPRAGSTG 133 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + G + + R E+ L R E +L+ L + G + + Q+ A++G Sbjct: 134 ATAAVVHRIGALTLDPSSRRVELDASPVELTRTEFDLLQALAEHPGWVLNRRQLTDAVWG 193 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 D ++++V+ HI+ LRKKL + V + R +GY + Sbjct: 194 E-DWVGDDHLVDVHIAHLRKKLGDDPSQPRFVQTVRGVGYRM 234 >gi|307243929|ref|ZP_07526054.1| response regulator receiver domain protein [Peptostreptococcus stomatis DSM 17678] gi|306492751|gb|EFM64779.1| response regulator receiver domain protein [Peptostreptococcus stomatis DSM 17678] Length = 227 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 33/223 (14%), Positives = 84/223 (37%), Gaps = 9/223 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + ++ + ++ D+ ++ Sbjct: 6 ILIVEDDKEILELTAEFLQAKNYLVDTATNGVECIKKFKESKYDMIILDI--KMPNLDGH 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR--EILARVAAIYRRL 119 ++IR S +P+I ++ + F+ G DD + KP Sbjct: 64 TTCKMIRNTSNIPIIFLTALSDESDQIKGFELGCDDYITKPFSFNLLLKRLEAVLRRSHN 123 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + N I + + +V+ V L +E IL+ L+ + + + + +I+G Sbjct: 124 ENKNTSLNFEDISLDLNTYTLKVKDAVVELTLKEFNILKELIEKYPQVITRETLLDSIWG 183 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D + +V++HI +RKK+ + + + +GY+++ Sbjct: 184 -YDYYGDSRIVDAHIKNIRKKIGLP----YIKTVKGIGYTLEK 221 >gi|118478544|ref|YP_895695.1| vancomycin response regulator [Bacillus thuringiensis str. Al Hakam] gi|118417769|gb|ABK86188.1| vancomycin response regulator [Bacillus thuringiensis str. Al Hakam] Length = 234 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 89/228 (39%), Gaps = 10/228 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + D ++ ++ + + + D++ ++ L L Sbjct: 9 LIVEDEREIADLVELYLKNENYTVFKYYTAKEALECIDKNAIDLAILDIML--PDVSGLT 66 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + IR P+I ++ + + G DD + KP E++ARV A RR K Sbjct: 67 ICQKIREKHTYPIIMLTAKDTEVDKITGLTIGADDYITKPFRPLELIARVKAQLRRYKKY 126 Query: 123 N-------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 N N + + + + + L E IL L N+G V+ Q+F Sbjct: 127 NGVTAQNENVIVHSGLVINISTHECSLNEKPLSLTPTEFSILRILCENKGNVVSSEQLFH 186 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222 I+G + N + HI LR+K+ + + + +GY I+ Sbjct: 187 EIWGDEYFSKSNNTITVHIRHLREKMNDTVDNPKYIKTVWGIGYKIEK 234 >gi|77920222|ref|YP_358037.1| two component signal transduction response regulator [Pelobacter carbinolicus DSM 2380] gi|77546305|gb|ABA89867.1| two component signal transduction response regulator [Pelobacter carbinolicus DSM 2380] Length = 238 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 32/228 (14%), Positives = 81/228 (35%), Gaps = 13/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ +D +++G + + +G + + + D++ ++ G Sbjct: 6 ILVAEDDPHIREGLVDILEGEGYGVLAAQDGNEALRISEESSFDLALLDIM--MPGCNGY 63 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112 ++ R +R + +I ++ + + G DD + KP E + Sbjct: 64 DVCRELRRRDPALAIIMLTAKGEEIDKVIGLELGADDYITKPFGVHELRARIAAVLRRSR 123 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + GP + + F L RE ++LE + + + + Sbjct: 124 RTAPGAAGELPSTLAIGPATIDRKTYRGCLGTRNFRLTAREMKLLEAFYRHPDEALPRNT 183 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219 + + +G+ D ++ HI++LRKK+ + + + +GY Sbjct: 184 LLNLAWGI-DYQGTTRTLDQHIAQLRKKIEPDPAAPQVIMTVHGIGYR 230 >gi|264678608|ref|YP_003278515.1| two component heavy metal response transcriptional regulator [Comamonas testosteroni CNB-2] gi|299529834|ref|ZP_07043266.1| two component heavy metal response transcriptional regulator [Comamonas testosteroni S44] gi|262209121|gb|ACY33219.1| two component heavy metal response transcriptional regulator [Comamonas testosteroni CNB-2] gi|298722137|gb|EFI63062.1| two component heavy metal response transcriptional regulator [Comamonas testosteroni S44] Length = 230 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 46/227 (20%), Positives = 97/227 (42%), Gaps = 10/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + D ++G +++ ++ L S D+ ++ L G L Sbjct: 3 ILVVEDEIKLADYLNKGLAEEGFTVDVAHNGIDGLHLASEMDYDLIVLDGML--PGIDGL 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + +R Q P++ ++ ++ + G DD + KP E++AR+ + RR Sbjct: 61 AVLAALRQTKQTPVLMLTARGQVEDRVKGLQCGADDYLVKPFAFSELVARLHVLLRRSGP 120 Query: 122 SNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 S +A + R G+ L +E +L L+ +G+ + +T++ Sbjct: 121 SVAQAAPEATTLRLADLELDLIRRRATRAGQRIELTAKEFNLLSLLLRRQGEVLTRTELA 180 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 S ++ + + E NVVE I +LR KL + + R +GY ++ Sbjct: 181 SQVWDM-NFDSETNVVEVAIRRLRLKLDQPFEQHLLHTVRGMGYVLE 226 >gi|153932013|ref|YP_001382767.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|153936832|ref|YP_001386318.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|152928057|gb|ABS33557.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|152932746|gb|ABS38245.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] Length = 232 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 38/230 (16%), Positives = 82/230 (35%), Gaps = 12/230 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++D ++G ++ L + + ++ + Sbjct: 6 ILIVDDEKEIRDLIDIYLTNEGYITLKSSNGIEALELLKTNNVHLIILDIM--MPKMDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH--------REILARVA 113 E IR +P+I +S + +G DD + KP + ++ + Sbjct: 64 EACMKIREEKSMPIIMLSAKSEDMDKIIGLTTGADDYITKPFNPLELLARVKSQLRRYIK 123 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + I + + ++ + L RE ILE L NRG + +I Sbjct: 124 LNNSNGNENEDIVTIEDITINVATHEVKIGDQPVRLTPREFDILELLARNRGVVFSIEKI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 + ++ + N V HI KLR+K+ + + +GY ++ Sbjct: 184 YELVW-KEEFLDSNNTVMVHIRKLREKIEQNPRNPRYIKTVWGVGYKVEK 232 >gi|229164006|ref|ZP_04291943.1| Two-component response regulator vanRB [Bacillus cereus R309803] gi|228619389|gb|EEK76278.1| Two-component response regulator vanRB [Bacillus cereus R309803] Length = 216 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 44/221 (19%), Positives = 96/221 (43%), Gaps = 11/221 (4%) Query: 5 IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64 I+D +++ +++ + L D+ ++ L + Sbjct: 2 IEDNPDIQELIREFLMAQNFTVDVVGAGTEGILLFQKNSYDLVLLDVML--PDIDGYSIC 59 Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYRRLK 120 +I+R S VP+I ++ + ++ + F+ G+DD + KP H+ + RV + Sbjct: 60 KIMRGQSDVPIIMLTGLHNEESEIKGFELGIDDYITKPFHYTVFIKRVEAVLRRAATKEA 119 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + + S V G L +E I+ L+ NRGK ++++ + + ++G Sbjct: 120 ETATILHFHELMLNSTAYAAYVHGNQIELTTKEFEIIYTLLQNRGKVLSRSDLLNKVWG- 178 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ + V+++HI LRKKL G + + + +GY I+ Sbjct: 179 YEHYGDVRVIDTHIKNLRKKL----GIPYIKTVKGIGYKIE 215 >gi|115375995|ref|ZP_01463242.1| putative two component response regulator protein [Stigmatella aurantiaca DW4/3-1] gi|115366994|gb|EAU65982.1| putative two component response regulator protein [Stigmatella aurantiaca DW4/3-1] Length = 244 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 47/223 (21%), Positives = 86/223 (38%), Gaps = 8/223 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L++D + + G+ + + DV ++ L G LE Sbjct: 19 LLVEDDERLARLTSRYLQEHGLIVTIARTGPEGLAEAGRHAYDVLLLDLML--PGRDGLE 76 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYRR 118 + R +R S VP+I ++ + ++G DD + KP R I A+V Sbjct: 77 VCRELRTRSDVPIIMVTARGEEIDRVLGLETGADDYLPKPYSSRELLARIRAQVRRARGN 136 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 S G +++ + G+ L E +L L G+ +++ Q+ I Sbjct: 137 AGPSLQPLNVGRLQMDPRSLTAVLNGKTLSLTSYEFNLLRVLAERAGRVLSREQLLDLIK 196 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 G DE V + ++ HI +LR+KL + + R GY + Sbjct: 197 GSADE-VFDRSIDVHIFRLRQKLEEDPRNPRMLKTVRGAGYLL 238 >gi|284052047|ref|ZP_06382257.1| two-component response regulator [Arthrospira platensis str. Paraca] gi|291566535|dbj|BAI88807.1| two-component response regulator [Arthrospira platensis NIES-39] Length = 230 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 41/224 (18%), Positives = 89/224 (39%), Gaps = 12/224 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ +D + G + NS + D+ ++ L Sbjct: 4 ILIAEDEPRIAAFLEKGLRASGFTTAIANSGQDVLDQAGGQNFDLLILDLGL--PDRDGF 61 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH----REILARVAAIY 116 ++ + +R + P+I ++ L + ++G DD V KP + AR+ Sbjct: 62 QILKELRGQGETLPIIILTARDDLSDKVAGLEAGADDYVTKPFRFAELLARVRARLRNQT 121 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + N T + + R+ +V L +E +LE + + + +++ Q+ Sbjct: 122 GKPADDNKTLSTANVCLNLYTREVQVADRTVQLSAKEFLLLETFLRHPEQVLSREQLLDQ 181 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G +D N+V+ ++ LRKKL G D +++ R +GY + Sbjct: 182 VWG-YDYDPGSNIVDVYVGYLRKKL----GSDRIETVRGMGYRL 220 >gi|229018483|ref|ZP_04175345.1| DNA-binding response regulator [Bacillus cereus AH1273] gi|229024739|ref|ZP_04181178.1| DNA-binding response regulator [Bacillus cereus AH1272] gi|228736582|gb|EEL87138.1| DNA-binding response regulator [Bacillus cereus AH1272] gi|228742835|gb|EEL92973.1| DNA-binding response regulator [Bacillus cereus AH1273] Length = 225 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 41/221 (18%), Positives = 92/221 (41%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L DD +++ +G + + + + ++ ++ Sbjct: 6 ILLADDDKHIRELLHYHVQKEGFKVFEAEDGKVAQGILEKENIHLAIVDIM--MPFIDGY 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L IR + +P+I ++ L F SG DD + KP E++ R+ A+ RR ++ Sbjct: 64 TLCEEIRKYHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAEVIFRMKALLRRYQM 123 Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + G + + G+ LP +E +L L + G+ ++ ++ ++G+ Sbjct: 124 LSADIIKLHGTTIDRKGFEVKCNGQTILLPLKEFELLSQLASYPGRTFSREELIELVWGM 183 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D +E V+ H+ +LR + + + + R LGY ++ Sbjct: 184 -DFEGDERTVDVHVKRLRDRFSKRTDDFQITTVRGLGYKLE 223 >gi|225378583|ref|ZP_03755804.1| hypothetical protein ROSEINA2194_04251 [Roseburia inulinivorans DSM 16841] gi|225209420|gb|EEG91774.1| hypothetical protein ROSEINA2194_04251 [Roseburia inulinivorans DSM 16841] Length = 230 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 31/222 (13%), Positives = 85/222 (38%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + DG + + ++ ++ L Sbjct: 4 ILIVEDDSFLNKMLAYNLTADGYGVTSALNARTAAEAIRQREFNLVLLDINL--PDGNGF 61 Query: 62 ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH---REILARVAAIYR 117 EL ++I H +I ++ + ++ G D + KP + + + A+ Sbjct: 62 ELCKLIKPQHPDTIVIFLTANDQESDQIRGYEVGAVDYITKPFVIGALQRKIKAMFAMLE 121 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 K + + + G + + + + G+ L E ++L N + + + Q+ + Sbjct: 122 HHKPAKDIYDDGRLFLDFSEQTASLNGKPLTLSPMEYKMLNLFRKNPRQVLTRGQLLEKL 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 + + + V+E+ + + IS++R K+ + G + + +GY Sbjct: 182 WDIDERFVDEHTLTTSISRIRSKIESDGGAPYIKTVYGMGYQ 223 >gi|170016613|ref|YP_001727532.1| response regulator [Leuconostoc citreum KM20] gi|169803470|gb|ACA82088.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Leuconostoc citreum KM20] Length = 229 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 44/229 (19%), Positives = 89/229 (38%), Gaps = 9/229 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + ++G + ++ D+ + ++ L Sbjct: 3 ILVVDDDIEIAELLEIYLKNEGYEPVMAADGKEAISKLNTN-PDIGLMILDVMMPNMNGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ +I+R S+VP++ +S + +G DD V KP + E++ARV ++ RR Sbjct: 62 EVVKIVRKDSRVPILMLSAKSGDMDKIQGLITGADDYVTKPFNPLEVMARVRSLLRRADN 121 Query: 122 SNNRAETGP------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + G++ L E IL L ++ + + IF Sbjct: 122 AVQDKTPDVLDIGSLVINKDSHEVKTANGDIVNLTALEFGILYLLASHPNRVFSADDIFE 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223 ++ + V V H+S LR K+ G + + +GY I+ N Sbjct: 182 RVW-QQESVVSAKTVMVHVSHLRDKIEEATNGDQVIQTVWGVGYKIEVN 229 >gi|324997181|ref|ZP_08118293.1| response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein [Pseudonocardia sp. P1] Length = 225 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 42/225 (18%), Positives = 85/225 (37%), Gaps = 11/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ +D + G + + D+ ++ L G Sbjct: 5 ILVAEDEPRIASFLKKGLVAAGFGVTVVADGTGVHDHALTGGFDLMVLDIGL--PGMDGF 62 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118 ++ R +R A S +P+I ++ S+ T+ G DD + KP E+ ++ R Sbjct: 63 DVLRRLRAAGSAIPVIILTARDSVHDTVAGLTGGADDYMAKPFQFEELLARVQLRLERAR 122 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + R + G L RE + E + + G+ +++ Q+ ++ Sbjct: 123 PAPDPEVLAHRGLELDPRTRLVTLHGHAVELSAREFALAETFLRHPGQVLSRDQLLRLVW 182 Query: 179 GLFDEAV--EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 G A NVV+ ++ LR+KL G D + + R GY ++ Sbjct: 183 GSEYSAAATSSNVVDVYVRYLRRKL----GPDWIATVRGAGYRLE 223 >gi|255526521|ref|ZP_05393430.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296187630|ref|ZP_06856024.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] gi|255509771|gb|EET86102.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296047587|gb|EFG87027.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] Length = 230 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 43/226 (19%), Positives = 91/226 (40%), Gaps = 8/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD + +G ++ + + + ++ + Sbjct: 5 ILIADDNIEIIKILKPYVEKEGFTVVSALNGKEALDKFDVCNPQIVLLDIM--MPIIDGM 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IR S P+I I+ + +SG DD + KP E++AR+ AI RR+ Sbjct: 63 EVCKSIRFKSNTPIIMITAKSEDADKILGLNSGADDYIVKPFSPGEVVARIKAILRRITP 122 Query: 122 SNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 N T + ++ G L ++E +L L ++ K V++ + +I Sbjct: 123 PENIKLTTIKYPPLELDIENYSIKLNGSNINLTKKEIEVLWMLSSSPNKIVSRDTLLDSI 182 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSIDW 222 +G+ D + V++HI ++R KL ++ + + +GY + Sbjct: 183 WGI-DYFGDPRTVDTHIKRIRAKLALNGQYNWDIKTIWGMGYKFEV 227 >gi|269124841|ref|YP_003298211.1| winged helix family two component transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268309799|gb|ACY96173.1| two component transcriptional regulator, winged helix family [Thermomonospora curvata DSM 43183] Length = 244 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 49/224 (21%), Positives = 97/224 (43%), Gaps = 9/224 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A +++ G + S R D+ ++ L Sbjct: 19 LLVVEDDANIRELLAGSLRFAGFEVVTATSGTTAVEAAHRHRPDLIVLDVML--PDFDGF 76 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R +R+ P++ ++ ++ + G DD V KP E++AR+ AI RR + Sbjct: 77 AVVRRLRSGGTHTPVLFLTARDAVGDRITGLTIGGDDYVTKPFSLEEVIARIHAILRRAR 136 Query: 121 ----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + R I + D + G+ L E ++L Y MAN G+ ++K QI Sbjct: 137 GGAAEPSPRMVFADIELDEDSHEVWRAGKPISLSPTEFKLLRYFMANAGRVLSKAQILDH 196 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +D + +VES++S LR+K+ + + + R +GY + Sbjct: 197 VW-NYDFRGDAGIVESYVSALRRKV-DNTEPRLIHTLRGVGYVL 238 >gi|229819772|ref|YP_002881298.1| two component transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229565685|gb|ACQ79536.1| two component transcriptional regulator, winged helix family [Beutenbergia cavernae DSM 12333] Length = 242 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 50/233 (21%), Positives = 89/233 (38%), Gaps = 21/233 (9%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + F +G ++E + DV ++ L G LE Sbjct: 13 LVVEDEPDIATSIARRFTAEGWTVEIASDGLAGVEAAKRYAPDVIVLDVML--PGIDGLE 70 Query: 63 LPRIIRAHSQV--PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R I+A P++ ++ L G DD + KP RE+LARV A+ RR + Sbjct: 71 VCRRIQAEDPRAVPILMLTARDDETDLLVGLGVGADDYMTKPFSMRELLARVKALLRRHE 130 Query: 121 VSNNRAETGPIRV------------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 + A R G L E +L L ++ + Sbjct: 131 RVSRLAAVPADPRAEPPLELGDLVIDRAQRRVHRAGTEAHLTPTEFDLLVCLASSPRTVL 190 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + Q+ ++ D + V+SH+ LR+KL G D + + +GYS++ Sbjct: 191 TREQLLEEVWDWVDASG-TRTVDSHVKALRRKL----GADLIRTVHGVGYSLE 238 >gi|229819268|ref|YP_002880794.1| two component transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229565181|gb|ACQ79032.1| two component transcriptional regulator, winged helix family [Beutenbergia cavernae DSM 12333] Length = 233 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 54/230 (23%), Positives = 99/230 (43%), Gaps = 14/230 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D ++ DG +E + + D+ ++ L G Sbjct: 4 ILLVEDEESYREPLGYQLERDGFDVEAVATGPEALDAFDRSGADLVLLDLML--PGLSGT 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R VP+I ++ S + + G DD V KP +RE+LARV A+ RR Sbjct: 62 EVCRELRRRGDVPVIMLTAKDSEIDKVVGLELGADDYVTKPYSYRELLARVRAVLRRRGA 121 Query: 122 SNNRAET----------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + G +R+ +D + V GE+ P+P RE +LE + N + + + Sbjct: 122 GADGGGHLEDDDAVLVAGRVRMDTDRHEVRVDGELVPVPLREFELLEMFLRNPDRVLTRG 181 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 Q+ I+G + + ++ H+ +LR K+ + + R LGY + Sbjct: 182 QLIDRIWG-SNYVGDTKTLDVHVKRLRAKIEADPSIPQMLVTVRGLGYKL 230 >gi|251799424|ref|YP_003014155.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247547050|gb|ACT04069.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 225 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 43/222 (19%), Positives = 87/222 (39%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L DD ++ + +G + + A +++ I+ Sbjct: 4 LLLADDDPNIRALVRFVMTREGYQVYEAQDGAEAVEVMQRAPINLAIIDVM--MPRIDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL IR +P+I ++ L + G DD V KP E+L RV A++RR Sbjct: 62 ELCEYIRERYDIPIIMLTAKDQLSDKEQGYLRGTDDYVTKPFEPEELLFRVKALFRRYNQ 121 Query: 122 SNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 ++ I + + V LP +E +L L G+ ++ ++ ++ Sbjct: 122 VSHDLIRMNRITIDRKNVEVTDGQSVLLLPMKEFELLAQLAQYPGRLFSREELIRLVW-A 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 D ++ V+ HI +LR++ + + + R +GY ++ Sbjct: 181 ADFEGDDRTVDVHIKRLRQRFADYAEDFTIQTVRGIGYKVEV 222 >gi|220928012|ref|YP_002504921.1| transcriptional regulator [Clostridium cellulolyticum H10] gi|219998340|gb|ACL74941.1| two component transcriptional regulator, winged helix family [Clostridium cellulolyticum H10] Length = 228 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 46/219 (21%), Positives = 92/219 (42%), Gaps = 4/219 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D L+ +G + G ++ S L + ++ ++ L L Sbjct: 4 ILIVEDDKLLNEGISIVLKKHGHTVLSGYSYNEALCLFLNNNFELILLDINL--PDRSGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120 EL IR S VP+I I+ + Q ++ F +G DD + KP + R+ A+ R Sbjct: 62 ELCNEIRKKSDVPIIFITANDTEQDIVNGFVNGCDDYIAKPFSLEVMNRRIQAVLRRTGT 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + +G I + + L E ++L L N G+ + + I ++G Sbjct: 122 EDKSIFRSGEISINYEKMVVSKGKISLKLTATEYKLLTLLTQNSGQVLTRDIILQRLWGT 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGY 218 + V+EN V ++ +LR+K+ + + + +GY Sbjct: 182 DEAFVDENAVSVNMRRLRQKIEDDPKNPKYIKTVFGIGY 220 >gi|73541850|ref|YP_296370.1| phosphate regulon transcriptional regulatory protein phoB [Ralstonia eutropha JMP134] gi|72119263|gb|AAZ61526.1| Phosphate regulon transcriptional regulatory protein phoB [Ralstonia eutropha JMP134] Length = 235 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 44/226 (19%), Positives = 83/226 (36%), Gaps = 8/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++++D + + G + E L S D+ ++ L G G Sbjct: 5 ILVVEDEPAIAELIAVNLQHAGHYPIRAYNAEQALSLMSDVLPDLVLLDWMLPGKSGATF 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAA 114 + R Q+P+I ++ Q + ++G DD V KP +E+ + R A Sbjct: 65 AKELRANDRTKQIPIIMLTARSEEQDKVMGLEAGADDYVTKPFSPKELLARIKAVLRRRA 124 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 V + L E R+L +LM + + +++Q+ Sbjct: 125 PQLTDDVVAINGLRLDPATHRVTGEDNAGPIKLDLGPTEFRLLHFLMTHPERVHSRSQLL 184 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G VEE V+ HI +LR L + +++ R GY + Sbjct: 185 DQVWGDH-VFVEERTVDVHIKRLRAALTPGGYSNMIETVRGSGYRL 229 >gi|315022466|gb|EFT35493.1| Phosphate regulon transcriptional regulatory protein phoB [Riemerella anatipestifer RA-YM] gi|325335426|gb|ADZ11700.1| Signal transduction response regulator, receiver region [Riemerella anatipestifer RA-GD] Length = 225 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 42/223 (18%), Positives = 89/223 (39%), Gaps = 9/223 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +LIDD + + +G + N+ + ++ + G + Sbjct: 6 ILLIDDEPDILEIISYNLKKEGYEVHTANNGNEGIEKAKEILPHLILLDVMMPDKDGIET 65 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVN---KPIHHREILARVAAIYR 117 + R I ++ +S + L + +G +D + KP + + + + Sbjct: 66 CQEIRKIATLEGCLIVFLSARGEEFSQLAGYQAGANDYIVKLIKPKVLISKVNALMNLTQ 125 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 +++ N + G + + D E F LP++E +L L +N K + +I + Sbjct: 126 QVEEKNKILKIGHLIIDRDNFKVTKGDESFILPKKEFDLLNLLASNTEKVFKREEILEKV 185 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G D V E ++ HI +LR+KL GF + + + +GY + Sbjct: 186 WGN-DVVVGERTIDVHIRRLREKL----GFKSIQTLKGIGYKL 223 >gi|256824367|ref|YP_003148327.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Kytococcus sedentarius DSM 20547] gi|256687760|gb|ACV05562.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Kytococcus sedentarius DSM 20547] Length = 222 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 48/222 (21%), Positives = 92/222 (41%), Gaps = 8/222 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + G + ++ DV ++ L G +E Sbjct: 2 LVVDDEKPLARMVATYLERAGYEVALTHTGPAAVQAARVHEPDVMVLDLGL--PGMDGIE 59 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +RA S+ ++ ++ + L+ G DD + KP RE++ARV A+ RR + + Sbjct: 60 VCRRVRAFSECYVLMLTARGDERHRLEGLAVGADDYITKPFSVRELVARVGAVMRRPRTT 119 Query: 123 NNRAETGPIR----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + E + + V G+V L R E +L L + ++ Q+ ++ Sbjct: 120 VSAPEPERVCGDLVIDLAAHGARVSGQVVQLTRTEFDLLAALSGRPHQAFSRRQLIDIVW 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +E +V+ HI LR+KL +D+ R +GY + Sbjct: 180 D-PAWVGDERLVDVHIKNLRRKLDADPA-RYIDTVRGVGYRM 219 >gi|261408871|ref|YP_003245112.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|329928807|ref|ZP_08282646.1| response regulator MprA [Paenibacillus sp. HGF5] gi|261285334|gb|ACX67305.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] gi|328937450|gb|EGG33871.1| response regulator MprA [Paenibacillus sp. HGF5] Length = 228 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 45/223 (20%), Positives = 91/223 (40%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +G + ++ + S DV ++ Sbjct: 5 ILIVDDDEKIISMLRRGLAFEGYDVLTASNGAEGLKVILSEDPDVVVLDVM--MPQVDGF 62 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYR 117 E R +R S +P++ ++ ++ + D+G DD + KP E + + Sbjct: 63 EALRRLREGGSTIPVLMLTAKDEVENRVKGLDTGADDYLVKPFALEELLARVRALLRRKT 122 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 SN+R + + +D R+ G+ L +E +L M N + +++ I I Sbjct: 123 GDDTSNHRLTFEDLVMDTDAREVIRGGQRLELTAKEFELLHLFMQNPKRVLSRDLIMDKI 182 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G +D + E NV+E +I+ LR+K G + + R GY + Sbjct: 183 WG-YDYSGESNVLEVYIAMLRQKTEEHGGKRLIQTIRGAGYIL 224 >gi|134101789|ref|YP_001107450.1| putative two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|291009773|ref|ZP_06567746.1| putative two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|133914412|emb|CAM04525.1| putative two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 224 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 42/222 (18%), Positives = 86/222 (38%), Gaps = 5/222 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D V+D + +G + ++ R ++ L+ L Sbjct: 4 LVVEDEPGVRDAVVRGLESEGYEVRAAGDGARALTEITAWRPGAIVLD--LLMPFMDGLT 61 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-HREILARVAAIYRRLK 120 + R +RA P++ ++ ++ +D D+G DD + KP + A + R Sbjct: 62 MCRRLRADGDRTPILVLTARDAVADRIDGLDAGADDYLVKPFDLDELLARVRALLRRSYP 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + V + L R E +LE L+ N G+ + + + ++G Sbjct: 122 GDDTVLRCADLAVDTGAHRVRRGHRTVELSRTEYALLEVLLRNAGQAMPRGLLVERVWGQ 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 D N +E ++ LR+KL V + R +GY +D Sbjct: 182 -DFGPSSNSLEVYVRYLRRKLEAGGEPRLVHTVRGVGYRLDE 222 >gi|117621451|ref|YP_858400.1| DNA-binding response regulator [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117562858|gb|ABK39806.1| DNA-binding response regulator [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 240 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 46/229 (20%), Positives = 90/229 (39%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + ++D G+ + + + L D+ ++ GE L Sbjct: 8 ILVVDDHSEIRDLLKRFLEQHGLRVSCARDGKEMKRLLEEREFDLLVLDLM--MPGEDGL 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R +RA S +P+I ++ + + G DD + KP + RE+LAR+ A+ RR +V Sbjct: 66 TLCRELRAKSSLPIIMLTAMGEETDRIIGLEMGADDYLAKPFNPRELLARIKAVMRRTQV 125 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF---------PLPRRERRILEYLMANRGKRVAKTQ 172 A R R L E +L + + +++ Q Sbjct: 126 EPQPAAETLTRDLRFDRWLLDINRRELVDEEGVGLSLSTAEFDLLRVFLERPQRVLSRDQ 185 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + G A + +++ +S+LR+KL + + + + GY Sbjct: 186 LLDLARGREAVAFD-RAIDTLVSRLRRKLERDPKNPELIKTIWGGGYLF 233 >gi|322513689|ref|ZP_08066784.1| phosphate regulon response regulator [Actinobacillus ureae ATCC 25976] gi|322120497|gb|EFX92404.1| phosphate regulon response regulator [Actinobacillus ureae ATCC 25976] Length = 229 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 41/220 (18%), Positives = 93/220 (42%), Gaps = 3/220 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++++D +++ + + + + ++ L G G + Sbjct: 5 ILIVEDEKAIREMIALFLLQQNYQVIDAEDYQSAVKKLD-EKPKLILLDWMLPGRSGIQF 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ + +Q+P++ ++ S + ++G DD V KP + ++AR+ A+ RR Sbjct: 64 IQYLKKSEETTQIPILMLTARSSEDDCITCLNTGADDYVTKPFSPKVLIARIEALLRRTY 123 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 +N+ + + + + Q + L E ++L + M + K ++ Q+ ++G Sbjct: 124 QNNDVINIDDLILDQNAKRVTFQKKEISLSSTEYKLLHFFMTHPEKVYSREQLLDFVWGN 183 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D VE+ V+S+I +LRK L V + R GY Sbjct: 184 -DIYVEDRTVDSYIRRLRKSLEPCGFERYVQTVRGSGYRF 222 >gi|241766028|ref|ZP_04763947.1| two component transcriptional regulator, winged helix family [Acidovorax delafieldii 2AN] gi|241363977|gb|EER59246.1| two component transcriptional regulator, winged helix family [Acidovorax delafieldii 2AN] Length = 247 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 39/227 (17%), Positives = 81/227 (35%), Gaps = 10/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + I G + + D+ ++ L G Sbjct: 23 ILVVEDEPKMAALLIDYLHAAGYRADRLADGREVAAFVRGRQPDLVLLDIML--PGRDGF 80 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE------ILARVAAI 115 E+ R +R S VP+I ++ L D G DD + K + Sbjct: 81 EVCRELRGFSDVPIIMLTARADEADRLAGLDLGADDYICKTPFSPREIVARVKAILRRSR 140 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + + + +G L E R+L L A G+ +++ + + Sbjct: 141 RADASTAPEGKGAAALHIDAAAYRATFRGVALDLTPVEFRLLRSLAAVPGQVLSREVLLN 200 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 ++ AV + V++HI LR+KL G +P+ + +G+ ++ Sbjct: 201 KLHDDH-RAVTDRAVDAHIKNLRRKLEQVAPGCEPIRAVYGVGFRLE 246 >gi|91781372|ref|YP_556579.1| two component heavy metal response transcriptional regulator [Burkholderia xenovorans LB400] gi|91694032|gb|ABE37229.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia xenovorans LB400] Length = 224 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 40/222 (18%), Positives = 92/222 (41%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D A + + + G ++ + L + R D+ ++ Sbjct: 3 ILVIEDEAKTGEYLLNGLTEAGYVVDVAANGIDGLHLANEMRYDLILLDVM--MPEMDGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119 + + + A P++ +S +L+ L D G DD + KP E+ R+ + Sbjct: 61 SVMKKLGARLDTPVLFLSARGTLEDRLKGLDLGADDYLVKPFSFAELLARIRIILRRGQP 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + R E G + + R E G L +E +L + + ++G+ +++ I S ++ Sbjct: 121 QKQEERLEVGDLHIDVPKRRVERGGTRITLTNKEFNLLLFFVQHQGQVLSRALIASRVWD 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + + NVV+ + +LR+K+ + + +GY + Sbjct: 181 M-NFDSDSNVVDVAVRRLRQKIDEPFEVRLIHTVHGVGYRCE 221 >gi|319787643|ref|YP_004147118.1| PhoB family transcriptional regulator [Pseudoxanthomonas suwonensis 11-1] gi|317466155|gb|ADV27887.1| two component transcriptional regulator PhoB, winged helix family [Pseudoxanthomonas suwonensis 11-1] Length = 229 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 45/224 (20%), Positives = 81/224 (36%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++D + + D+ ++ L G L Sbjct: 5 ILIVDDEPAIRDMVAFALRKGDYEPVHAGDAREAQAAIADRVPDMILLDWML--PGTSGL 62 Query: 62 ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIY 116 EL R R +VP+I ++ + ++GVDD V KP RE+ R Sbjct: 63 ELARRWRREALTREVPIIMLTARGEENDRVGGLEAGVDDYVVKPFSSRELLARIRAVMRR 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 R + G +R+ + E R+L + M + + ++ Q+ Sbjct: 123 SREDDEDGSVAAGNLRIDGAAHRVFAGDAPVAIGPTEYRLLHFFMTHPDRVYSRAQLLDH 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G VEE ++ HI +LR+ L V + R GY Sbjct: 183 VWGGSVY-VEERTIDVHIRRLRRTLEPFGADGMVQTVRGAGYRF 225 >gi|253990976|ref|YP_003042332.1| phosphate regulon transcriptional regulatory protein phob [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782426|emb|CAQ85590.1| phosphate regulon transcriptional regulatory protein phob [Photorhabdus asymbiotica] Length = 229 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 40/222 (18%), Positives = 93/222 (41%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D +++ + +G + S D+ ++ + G G ++ Sbjct: 5 ILVVEDETPIREMVCFVLEKNGYQPVEAEDYDSALACLSEPYPDLVLLDWMIPGGSGLQI 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ + +P++ ++ + + + G DD + KP +E++ARV A+ RR+ Sbjct: 65 IKQMKRDNNVRDIPVMMLTARGEEEDRVRGLEIGADDYITKPFSPKELVARVKAVLRRIS 124 Query: 121 VSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 E + + Q +V + E ++L + M + + ++ Q+ + ++ Sbjct: 125 PMMIENLIEMDGLILDITSHRVTSQDQVLDMGPTEFKLLHFFMTHPERVYSREQLLNYVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G + VE+ V+ HI +LRK L V + R GY Sbjct: 185 GA-NVYVEDRTVDVHIRRLRKVLEVGGHDKMVQTVRGTGYRF 225 >gi|168205523|ref|ZP_02631528.1| DNA-binding response regulator [Clostridium perfringens E str. JGS1987] gi|170662911|gb|EDT15594.1| DNA-binding response regulator [Clostridium perfringens E str. JGS1987] Length = 227 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 38/225 (16%), Positives = 90/225 (40%), Gaps = 10/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D ++ F + + S E + D++ ++ L G Sbjct: 3 ILLVEDEESIRGFLRINFQRENFQVIECESGEEGVRKALIEKPDIAILDVML--PGMNGF 60 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR--- 117 E+ + +R ++ +I ++ + G DD V KP + EI RV A+ R Sbjct: 61 EVCQKLRESFPRMGIIILTAKGEDMDKIMGLQFGADDYVLKPFNPLEITLRVKALIRRLE 120 Query: 118 --RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + +++ E ++ + + + +E +++ M N GK + ++ + Sbjct: 121 GINEENNSDCIEVDNFKLDLYSQSLYKENVEIDVTPKEFLLMKIFMQNPGKAFTRDELLN 180 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219 ++G+ D + +V+ +I +LR K+ +++ GY Sbjct: 181 LVWGI-DFFGDPKIVDVNIRRLRSKIEENSSKPKYIETVWGTGYR 224 >gi|239943288|ref|ZP_04695225.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239989746|ref|ZP_04710410.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] gi|291446760|ref|ZP_06586150.1| response regulator protein [Streptomyces roseosporus NRRL 15998] gi|291349707|gb|EFE76611.1| response regulator protein [Streptomyces roseosporus NRRL 15998] Length = 233 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 52/229 (22%), Positives = 96/229 (41%), Gaps = 14/229 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA---REDVSAIEAFLIGKGEK 59 +LI+D V+DG + G +E + E L + R +++ ++ L G Sbjct: 5 LLIEDDTSVRDGMELVLRRHGYGVETAATGEEALALLAGERGARVELAVLDLML--PGMD 62 Query: 60 VLELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 E+ R IRA + P+I ++ + + ++G DD V KP+ + AR+ A RR Sbjct: 63 GFEVCRRIRARTAALPVIMLTARGDDRDIVAGLEAGADDYVVKPVTAPVLEARIRAALRR 122 Query: 119 LKVSNNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + S + + G G PLP E R+L L A+ G+ + Q Sbjct: 123 AEPSLRQRADADVTDLAGLVIDRAGLTVTRNGTPVPLPPTELRLLLELSASPGRVFTREQ 182 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + ++++ + +V++ + +LR K+ V + R GY Sbjct: 183 LLASVWD-HTFLGDSRLVDAAVGRLRAKIEEVPGRPRYVQTVRGFGYRF 230 >gi|307730872|ref|YP_003908096.1| winged helix family two component transcriptional regulator [Burkholderia sp. CCGE1003] gi|307585407|gb|ADN58805.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1003] Length = 220 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 55/221 (24%), Positives = 101/221 (45%), Gaps = 9/221 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D ++ +G +G +++ E +S D+ ++ L L Sbjct: 3 ILLVEDDRMIAEGVRKALRGEGFAVDWVEDGEAALSAATSQPYDLVLLDLGL--PKRDGL 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ R +RA P++ ++ ++ + D+G DD + KP E+ AR+ A+ RR Sbjct: 61 DVLRALRARGHALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQS 120 Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++ + ++G L RE +LE L+A G ++K+Q+ +YG Sbjct: 121 GRSDSTIRHGNLTLDPASHQVTLEGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + E + N VE +I LRKKL G D + + R LGY I Sbjct: 181 -WGEEIGSNTVEVYIHALRKKL----GADLIRNVRGLGYMI 216 >gi|225408012|ref|ZP_03761201.1| hypothetical protein CLOSTASPAR_05233 [Clostridium asparagiforme DSM 15981] gi|225042445|gb|EEG52691.1| hypothetical protein CLOSTASPAR_05233 [Clostridium asparagiforme DSM 15981] Length = 234 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 49/228 (21%), Positives = 88/228 (38%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +L+DD + D + DG + D ++ L Sbjct: 5 ILLVDDEKDILDLLEEVLRRDGFREIRRAKDGAGAIRACREFLPDAVVLDIML--PDMDG 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ + IR S ++ +S + G DD + KP RE++ RV A RR + Sbjct: 63 LEVCKQIREFSYCSILFLSSKNDDIDKILGLSCGGDDYITKPFSPREVVFRVKAQLRRQQ 122 Query: 121 VSNNRA-------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 GPI V + G L RE +L L+ + K ++K ++ Sbjct: 123 YQGAGPAAAGTLLTAGPISVDRESGRAYKDGRELSLTGREFLLLACLVEHADKIISKERL 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + ++G + A+ +N + HI LR+K+ + + + + LGY + Sbjct: 183 YEQVWGAY-SAICDNTIMVHIRHLREKIEDSPSSPRQLVTVKGLGYKL 229 >gi|254411201|ref|ZP_05024978.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] gi|196181702|gb|EDX76689.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] Length = 249 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 90/228 (39%), Gaps = 9/228 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +LIDD + + G + + L + D+ ++ L G V Sbjct: 4 ILLIDDDPAISELVSINLEMAGYEVHQAPDGIKGQALALQLQPDLIMLDLMLPRVDGFTV 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R + +P++ ++ Q ++ F++G DD + KP E+LARV A+ RR Sbjct: 64 CQRLRRDERTTDIPVLMLTALGQTQDKVEGFNAGADDYLTKPFELEEMLARVRALLRRTD 123 Query: 121 VSNNRAETGPIRVF------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 A+ I + + + + L E +L L+ G+ V+ ++I Sbjct: 124 RIPQAAKHTEILNYGPLTLIPERFETIWFNQTVKLTHLEFELLHCLLQRHGQTVSPSEIL 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 ++G +D + + H+ LR KL + + + GY ++ Sbjct: 184 KEVWG-YDPDDDIETIRVHVRHLRTKLEPDPRHPQYIKTVYGAGYCLE 230 >gi|77920671|ref|YP_358486.1| two component signal transduction response regulator [Pelobacter carbinolicus DSM 2380] gi|77546754|gb|ABA90316.1| two component transcriptional regulator, winged helix family [Pelobacter carbinolicus DSM 2380] Length = 223 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 42/220 (19%), Positives = 92/220 (41%), Gaps = 5/220 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D V ++ +++ E +L + D+ ++ L + LE Sbjct: 4 LVVEDEKKVASFIKRGLEEEDFTVDVAFDGEEGLYLAENNPYDIILMDLML--PKKDGLE 61 Query: 63 LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + +R P++ ++ +++ + DSG DD + KP E+LARV A+ RR Sbjct: 62 VIKELRTKDVTTPVLCLTAKDAVEDIVSGLDSGSDDYLTKPFAFSELLARVKALLRRSAK 121 Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 R+ + L +E +LEY M N + + + I ++ Sbjct: 122 DRGAEIYFADLRLDPVSHKVWRSDQEIDLTAKEYALLEYFMRNPNQVLTRAMIAEHVWD- 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + N+++ +++ LRKK+ + + R +GY + Sbjct: 181 YTFDSFTNIIDVYVNYLRKKVDRDFDKKLIHTVRGVGYVL 220 >gi|25027504|ref|NP_737558.1| two-component system response regulator [Corynebacterium efficiens YS-314] gi|259507088|ref|ZP_05749988.1| DNA-binding response regulator [Corynebacterium efficiens YS-314] gi|23492786|dbj|BAC17758.1| two-component system response regulator [Corynebacterium efficiens YS-314] gi|259165366|gb|EEW49920.1| DNA-binding response regulator [Corynebacterium efficiens YS-314] Length = 233 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 40/228 (17%), Positives = 82/228 (35%), Gaps = 13/228 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD V++ +G ++ + ++ ++ LE Sbjct: 4 LVVDDEPAVRESLRRSLTFNGYNVVTAEDGVQALEVIEREHPEIVILDVM--MPRMDGLE 61 Query: 63 LPRIIRAHSQVPLI-GISDYPSLQTTLDFFDSGVDDVVNKPI---------HHREILARV 112 + R +R+ I ++ ++ + D+G DD + KP + V Sbjct: 62 VCRTLRSQGDDRSILILTARDNVSDRVGGLDAGADDYLTKPFALEELLARVRSLVRRSAV 121 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + G + + + RD L R E +LE LM N K + + Sbjct: 122 ESNNNAASNRQTELTFGDLTLNPETRDVSRAVRPISLTRTEFALLELLMKNPRKVLPRNT 181 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I ++G +D N +E +I LR+K + + + R +GY + Sbjct: 182 ILEEVWG-YDFPTSGNALEVYIGYLRRKTEQEGESRVIYTVRGVGYVL 228 >gi|255281191|ref|ZP_05345746.1| phosphate regulon transcriptional regulatory protein Phob [Bryantella formatexigens DSM 14469] gi|255268148|gb|EET61353.1| phosphate regulon transcriptional regulatory protein Phob [Bryantella formatexigens DSM 14469] Length = 230 Score = 142 bits (357), Expect = 5e-32, Method: Composition-based stats. Identities = 32/222 (14%), Positives = 84/222 (37%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + DG + + D+ ++ L Sbjct: 4 ILIVEDDSFLNKMLDYNLTADGYGVTSALNARTAADAIRQREFDLVLLDINL--PDGNGF 61 Query: 62 ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH---REILARVAAIYR 117 EL ++I H +I ++ + ++ G D + KP + + + A+ Sbjct: 62 ELCKLIKPQHPDTIVIFLTANDQESDQIRGYEVGAVDYITKPFVIGALQRKIKAMFAMLE 121 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 K + + + G + + + + G+ L E ++L N + + + Q+ + Sbjct: 122 HHKPAKDIYDDGRLFLDFSEQTASLNGKPLTLSPMEYKMLNLFRKNPRQVLTRGQLLEKL 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 + + + V+E+ + + IS++R K+ G + + +GY Sbjct: 182 WDIDERFVDEHTLTTSISRIRSKIEADGGAPYIKTVYGMGYQ 223 >gi|167464858|ref|ZP_02329947.1| two-component response regulator involved in phosphate regulation [Paenibacillus larvae subsp. larvae BRL-230010] gi|322382891|ref|ZP_08056726.1| two-component response regulator-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153160|gb|EFX45615.1| two-component response regulator-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 237 Score = 142 bits (357), Expect = 5e-32, Method: Composition-based stats. Identities = 40/230 (17%), Positives = 82/230 (35%), Gaps = 14/230 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + +G + D+ ++ L G Sbjct: 5 ILVIEDEPTLSRLLSYNLAQEGYETDVVGDGAEGYQAAVRNTYDLIILDIML--PGMNGF 62 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILA 110 E+ +R S+ P+I ++ + + + G DD + KP Sbjct: 63 EVLSKLRQKGSKTPVIILTARNAEEEVVQGLKFGADDYITKPFGVAELLSRVSAVLRRTG 122 Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + G + ++ + + + + PL +E +L YL+ G V + Sbjct: 123 NKEVEDTGTHSGDKVITVGDLFIYPEKYEVVLNNQSIPLRPKEFEVLLYLVQRLGIVVTR 182 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + ++G FD + V+ H+S LRKKL ++S R +GY + Sbjct: 183 DDLMNVVWG-FDYIGGQRTVDVHVSSLRKKLEMNQQSVQIESIRGVGYKL 231 >gi|148261933|ref|YP_001236060.1| two component transcriptional regulator [Acidiphilium cryptum JF-5] gi|326405441|ref|YP_004285523.1| phosphate regulon transcriptional regulatory protein PhoB [Acidiphilium multivorum AIU301] gi|146403614|gb|ABQ32141.1| two component transcriptional regulator, winged helix family [Acidiphilium cryptum JF-5] gi|325052303|dbj|BAJ82641.1| phosphate regulon transcriptional regulatory protein PhoB [Acidiphilium multivorum AIU301] Length = 236 Score = 142 bits (357), Expect = 5e-32, Method: Composition-based stats. Identities = 46/222 (20%), Positives = 90/222 (40%), Gaps = 4/222 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61 ++++D A + G ++ + A D+ ++ L G +V Sbjct: 10 LVVEDEAPLVTLLRYNLEKSGFRVDEAGDGGEALGRINEAMPDLVLLDWMLPTMSGIEVC 69 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119 R + +P+I ++ Q T+ ++G DD + KP ++AR+ A Sbjct: 70 RQLRRKPSTRHLPVIMLTARAEDQDTVRGLETGADDYITKPFSPEALIARIRALLRRSGT 129 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + + G V L E R+LE+ M + + ++ + +A++G Sbjct: 130 APARAPLVFHDLELDPTTHRVTRGGRVLHLGPTEFRLLEFFMRHPRRVFSREDVLNAVWG 189 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D VE V+ HI +LRK + + D V + R GY++D Sbjct: 190 R-DIHVEPRTVDVHIRRLRKSINAETDIDLVRTVRAAGYALD 230 >gi|329115641|ref|ZP_08244363.1| Transcriptional regulatory protein CusR [Acetobacter pomorum DM001] gi|326695069|gb|EGE46788.1| Transcriptional regulatory protein CusR [Acetobacter pomorum DM001] Length = 225 Score = 142 bits (357), Expect = 5e-32, Method: Composition-based stats. Identities = 52/222 (23%), Positives = 99/222 (44%), Gaps = 6/222 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L++D V++ + G +E + L +S + DV ++ L G G + L Sbjct: 4 LLVEDDQTVRNFIAKGLAEAGHLVEQAEDGKSGLSLAASEKFDVIILDRMLPG-GVEGLH 62 Query: 63 LPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 + + + ++ P++ +S + + +G DD V KP E+ AR+ R Sbjct: 63 ILQTLRNQNNLTPVLLLSALADVDEKVAGLKAGGDDYVTKPFSFSELQARLEALVRRNRN 122 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 R G + + R+ G+ L RE R+LE+LM + G+ V +T + ++ Sbjct: 123 EAQPQTRLTIGDLEIDLLSRNVRRAGQKIELQPREFRLLEFLMRHAGQVVTRTMLLEGVW 182 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + NV++ HIS+LR+K+ V + R GY + Sbjct: 183 D-YHFDPQTNVIDVHISRLRQKIDRPFHHPLVHTIRNAGYML 223 >gi|311894023|dbj|BAJ26431.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 225 Score = 142 bits (357), Expect = 5e-32, Method: Composition-based stats. Identities = 47/221 (21%), Positives = 90/221 (40%), Gaps = 5/221 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + +G +++ + + DV ++ L G Sbjct: 4 LVVEDEQRLALAIKHGLEAEGFTVDTVHDGLSGLARATDHSYDVVILDIML--PGLNGYR 61 Query: 63 LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + +R A S ++ ++ + D+G DD ++KP ++AR+ A+ RR+ Sbjct: 62 VCARLRAAGSDAGILMLTAKDGEWDEAEALDTGADDYLSKPFSFVVLVARLKALARRIGS 121 Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 R V S R G L RE +L++L G+ V+K +I ++ Sbjct: 122 RAPRRAVLGDLVVDSAARTCSRAGRPIALTPREFAVLDHLARRAGEAVSKREILEQVWDA 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + N VE HIS LR+K+ G + + R GY ++ Sbjct: 182 A-ADSDPNTVEVHISALRRKIDTPFGRSALQTVRGAGYRLE 221 >gi|308068191|ref|YP_003869796.1| sensory transduction protein [Paenibacillus polymyxa E681] gi|305857470|gb|ADM69258.1| Hypothetical sensory transduction protein [Paenibacillus polymyxa E681] Length = 229 Score = 142 bits (357), Expect = 5e-32, Method: Composition-based stats. Identities = 45/224 (20%), Positives = 91/224 (40%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD + +G + + +A DV ++ Sbjct: 5 ILIIDDDEKIVSMLRRGLAFEGYEVLTAANGAEGLNKMLTAEPDVVVLDVM--MPQVDGF 62 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIY 116 E+ R +R S VP++ ++ ++ + D G DD + KP + A + Sbjct: 63 EVCRRMREGGSTVPVLMLTAKDEVENRVKGLDLGADDYLVKPFALEELLARVRALLRRKT 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + NR +++ ++ R+ G+ L +E +L M N + +++ I Sbjct: 123 EQQDNNGNRLTFEDLQLDNESREVVRGGKRLELTAKEFELLHLFMQNPKRVLSRDLIMDK 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I+G +D + E NV+E +I+ LR+K G + + R GY + Sbjct: 183 IWG-YDYSGESNVLEVYIAMLRQKTEQDGGKRLIRTIRGAGYIL 225 >gi|291521396|emb|CBK79689.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Coprococcus catus GD/7] Length = 230 Score = 142 bits (357), Expect = 5e-32, Method: Composition-based stats. Identities = 32/222 (14%), Positives = 85/222 (38%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + DG + + D+ ++ L Sbjct: 4 ILIVEDDSFLNKMLDYNLTADGYGVTSALNARTAAEAIRQREFDLVLLDINL--PDGNGF 61 Query: 62 ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL ++I H +I ++ + ++ G D + KP R + ++ A++ L+ Sbjct: 62 ELCKLIKPQHPDTIVIFLTANDQESDQIRGYEVGAVDYITKPFVIRALQRKIKAMFAMLE 121 Query: 121 VSNNRAETGPI---RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + + + G+ L E ++L N + + + Q+ + Sbjct: 122 HHKPAKDIYDDGRLFLDFSEQTASLNGKPLTLSPMEYKMLNLFRKNPRQVLTRGQLLEKL 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 + + ++ V+E+ + + IS++R K+ + G + + +GY Sbjct: 182 WDIDEKYVDEHTLTTSISRIRSKIESDGGAPYIKTVYGMGYQ 223 >gi|256158647|ref|ZP_05456530.1| Transcriptional regulatory protein [Brucella ceti M490/95/1] gi|256254051|ref|ZP_05459587.1| Transcriptional regulatory protein [Brucella ceti B1/94] gi|261221191|ref|ZP_05935472.1| two component transcriptional regulator [Brucella ceti B1/94] gi|265997152|ref|ZP_06109709.1| two component transcriptional regulator [Brucella ceti M490/95/1] gi|260919775|gb|EEX86428.1| two component transcriptional regulator [Brucella ceti B1/94] gi|262551620|gb|EEZ07610.1| two component transcriptional regulator [Brucella ceti M490/95/1] Length = 228 Score = 142 bits (357), Expect = 5e-32, Method: Composition-based stats. Identities = 42/224 (18%), Positives = 88/224 (39%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++D + +G ++ + E + D+ ++ L G + Sbjct: 7 IAVVEDEEALSVLLRYNLEAEGYQVDTMLRGDEAEIALRESVPDLLILDWML--PGISGI 64 Query: 62 ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIY 116 EL R +R + P+I ++ + G DD V KP E+ + Sbjct: 65 ELCRRLRQRPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKAMLRR 124 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + ++ + G + + + + L E R+LEY M + G+ +++Q+ Sbjct: 125 ANPSILSHVLKVGDLLLDRQQHRVYRKEKEVHLGPTEFRLLEYFMMSPGRVFSRSQLLDG 184 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G D V++ V+ H+ +LRK + D + + R GYS Sbjct: 185 VWG-PDIYVDDRTVDVHVGRLRKVINVGRAADSIRTVRGAGYSF 227 >gi|325124170|gb|ADY83693.1| DNA-binding response regulator CreB [Acinetobacter calcoaceticus PHEA-2] Length = 240 Score = 142 bits (357), Expect = 5e-32, Method: Composition-based stats. Identities = 44/233 (18%), Positives = 87/233 (37%), Gaps = 17/233 (7%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 + I+D A + +G ++ N+ S D ++ L Sbjct: 7 ILCIEDEAAIVLPLRYALEREGWNVSWANTGTQALQYLSEQAFDFIILDIGL--PDLNGF 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP-------------IHHREI 108 E+ + +R SQ PL+ ++ + + G DD KP E+ Sbjct: 65 EVCKQLRQKSQTPLLFLTARDDEIDRVVGLEIGADDYCTKPFSAREIVARIKAIWRRMEV 124 Query: 109 LARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 + + + + A + + G+ L R E R+L L+ + + Sbjct: 125 QIQSNSSQNPISQAAIVAPSSIWSCNPQSLQIQYHGKSLQLTRYEYRLLFLLIQHPEQVF 184 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220 ++ Q+ I+ + ++E V++HI LR+KL+ DP+ + R GYS+ Sbjct: 185 SRQQLMDHIWEHPEHSLE-RTVDTHIKSLRQKLKQITPDNDPIRTHRGFGYSL 236 >gi|229030240|ref|ZP_04186297.1| Sensor histidine kinase [Bacillus cereus AH1271] gi|228731084|gb|EEL82009.1| Sensor histidine kinase [Bacillus cereus AH1271] Length = 231 Score = 142 bits (357), Expect = 5e-32, Method: Composition-based stats. Identities = 44/230 (19%), Positives = 84/230 (36%), Gaps = 12/230 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD + + ++G ++ + + S+ D+ ++ L Sbjct: 5 ILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQMISTYEVDLMVLDIM--MPKRNGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARVA 113 E+ + +R ++ VP++ +S + +G DD + KP + E + Sbjct: 63 EVCQEVRENNTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSF 122 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 K + + +V GE L E IL L +N G+ + +I Sbjct: 123 QNATSSKNEDGIIRIRSAEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEI 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222 F ++ D V HIS LR KL G + + +GY I+ Sbjct: 183 FERVWNE-DGYGSNKTVMVHISNLRDKLETGMNGEKFIHTVWGVGYKIEK 231 >gi|229086169|ref|ZP_04218386.1| Two-component response regulator [Bacillus cereus Rock3-44] gi|228697141|gb|EEL49909.1| Two-component response regulator [Bacillus cereus Rock3-44] Length = 225 Score = 142 bits (357), Expect = 5e-32, Method: Composition-based stats. Identities = 54/225 (24%), Positives = 99/225 (44%), Gaps = 10/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L++D +++ F ++G + + L + D+ ++ L Sbjct: 6 LLVEDERRLREIVSDYFRNEGFEVIEAEDGKQALELFAEHTIDLIMLDIML--PEIDGWS 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120 + R IR S+VP+I ++ TL F+ G D+ V KP + ++AR + +R Sbjct: 64 VCRRIRKESEVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGA 123 Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 V N I V R V GE L +E +L YLM N+G +++ + + Sbjct: 124 VGVVEENTLSMAGIDVNRLSRTVSVNGEEIILTHKEFELLVYLMENKGIVLSRQHLLDQL 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +G +D ++ V++HI KLR KL +K + + +GY + Sbjct: 184 WG-YDYYGDDRTVDTHIKKLRNKLGDK--AKHIGTVIRVGYKFEE 225 >gi|188589302|ref|YP_001921842.1| regulatory protein VanR [Clostridium botulinum E3 str. Alaska E43] gi|251780126|ref|ZP_04823046.1| regulatory protein VanR [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|188499583|gb|ACD52719.1| regulatory protein VanR [Clostridium botulinum E3 str. Alaska E43] gi|243084441|gb|EES50331.1| regulatory protein VanR [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 228 Score = 142 bits (357), Expect = 5e-32, Method: Composition-based stats. Identities = 43/227 (18%), Positives = 91/227 (40%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ ++ + + + ++ ++ + Sbjct: 5 ILIVDDDENIRNLLSIYLENENFKTIKAENAKEAIKIIDEKEIELVLLDIM--MPQIDGI 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E IR +P+I IS + +G DD + KP + E++ARV + RR + Sbjct: 63 EACMRIRKDKNMPIIMISAKSEDMDKIHGLTAGADDYITKPFNPLELIARVKSQLRRYQK 122 Query: 122 SNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N + + + +D R V + L +E ILE L N+G ++ +I+ Sbjct: 123 YNTGSNNQKVIIEIGDLTINTDTRQIWVGEKEVRLTPKEFDILELLARNKGIVLSIRKIY 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++ + +N V HI+ LR+K+ + + + +GY I Sbjct: 183 EEVW-KEEFFKSDNTVTVHITNLREKIEADPKAPVYIKTIWGVGYKI 228 >gi|187933165|ref|YP_001886869.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B] gi|187721318|gb|ACD22539.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B] Length = 228 Score = 142 bits (357), Expect = 5e-32, Method: Composition-based stats. Identities = 43/227 (18%), Positives = 90/227 (39%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ ++ + + + ++ ++ + Sbjct: 5 ILIVDDDENIRNLLSIYLENENFKTIKAENAKEAIKIIDEKEIELVLLDIM--MPQIDGI 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E IR +P+I IS + +G DD + KP + E++ARV + RR + Sbjct: 63 EACMRIRKDKNMPIIMISAKSEDMDKIHGLTAGADDYITKPFNPLELIARVKSQLRRYQK 122 Query: 122 SNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N + + + +D R V L +E ILE L N+G ++ +I+ Sbjct: 123 YNTGSNNQKVIIEIGDLTINTDTRQIWVGENEIRLTPKEFDILELLARNKGIVLSIRKIY 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++ + +N V HI+ LR+K+ + + + +GY I Sbjct: 183 EEVW-KEEFFKSDNTVTVHITNLREKIEADPKAPVYIKTIWGVGYKI 228 >gi|218699471|ref|YP_002407100.1| transcriptional regulatory protein YedW [Escherichia coli IAI39] gi|218369457|emb|CAR17222.1| DNA-binding response regulator in two-component system with YedV [Escherichia coli IAI39] Length = 223 Score = 142 bits (357), Expect = 5e-32, Method: Composition-based stats. Identities = 49/219 (22%), Positives = 97/219 (44%), Gaps = 3/219 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D ++ + G ++ + +L + ++ L G Sbjct: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIML--PGMDGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + +R Q P+I ++ S+ + DSG +D + KP E+LARV A R+ Sbjct: 61 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHYT 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 N+ E +++ S + L R+E ++L L + G+ + +T I S I+G+ Sbjct: 121 LNSTLEISGLKMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 179 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + N V+ I +LR K+ + + + R +GYS Sbjct: 180 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 >gi|308068364|ref|YP_003869969.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Paenibacillus polymyxa E681] gi|305857643|gb|ADM69431.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Paenibacillus polymyxa E681] Length = 243 Score = 142 bits (357), Expect = 5e-32, Method: Composition-based stats. Identities = 43/233 (18%), Positives = 89/233 (38%), Gaps = 14/233 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + +G ++ + S D+ ++ L G L Sbjct: 5 LLVIEDEPTLARLLSYNLIQEGFEVDTEDHGSAGFEKASRESYDLILLDLML--PGMNGL 62 Query: 62 ELP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILA 110 ++ R+ P+I ++ + SG DD + KP + Sbjct: 63 DILSRLRHQGLTTPIIILTAKNGEAEVVQGLKSGADDYITKPFGVSELLARVTAVLRRTS 122 Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + +++ + G + ++ + + + G+ L +E +L YL G + + Sbjct: 123 GGDEGVLSDQKDSSKIQLGELEIYPEKYEVILGGQSISLRPKEFEVLLYLSRKPGVVLTR 182 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 + +A++G FD + V+ H+S LRKKL +DS R +GY + N Sbjct: 183 DDLMNAVWG-FDYIGGQRTVDVHVSSLRKKLELDPDSVHIDSIRGVGYKLVVN 234 >gi|268610730|ref|ZP_06144457.1| two component transcriptional regulator, winged helix family protein [Ruminococcus flavefaciens FD-1] Length = 224 Score = 142 bits (357), Expect = 5e-32, Method: Composition-based stats. Identities = 45/225 (20%), Positives = 89/225 (39%), Gaps = 10/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ +G + + L D+ ++ Sbjct: 4 ILVVDDEVNIRKVVREYAEFEGYEVTEAENGMEAVNLCHDNDYDLIIMDVM--MPRLDGY 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + I +P+I +S L F+ GVDD V KP +E++ARV + +R Sbjct: 62 SACKEIHKSKNIPVIMLSARGEEYDKLFGFEIGVDDYVVKPFSPKELMARVKVVLKRSAR 121 Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + A+ GR+ V GE + +E +L YL+ N+ + + ++ Sbjct: 122 QESDAQLDKYVFEGLEVDISGREVYVNGEKASMTPKEYDLLFYLVKNKNIALTRDKLLEE 181 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G +D ++ V++HI LR L + + R +GY + Sbjct: 182 VWG-YDFFGDDRTVDTHIKMLRNSLGEY--RKFIVTLRGMGYKFE 223 >gi|164520380|gb|ABY60245.1| PhoP [Listeria monocytogenes] Length = 233 Score = 142 bits (357), Expect = 5e-32, Method: Composition-based stats. Identities = 47/232 (20%), Positives = 95/232 (40%), Gaps = 16/232 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD A + G + L S + D+ ++ L +E Sbjct: 2 LVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLML--PEMDGIE 59 Query: 63 LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + +R VP++ ++ + + G DD + KP RE++AR+ AI RR + Sbjct: 60 VTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTEG 119 Query: 122 SNNRAETGPIR-----------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 E + D + +Q ++ L +E +L +L +RGK ++ Sbjct: 120 KAEIIEDITEDSEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFSR 179 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 Q+ ++ +D E +V+ H+S LR K+ + + + R GY ++ Sbjct: 180 DQLLDTVW-NYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKME 230 >gi|58039296|ref|YP_191260.1| two component response regulator [Gluconobacter oxydans 621H] gi|58001710|gb|AAW60604.1| Two component response regulator [Gluconobacter oxydans 621H] Length = 226 Score = 142 bits (357), Expect = 5e-32, Method: Composition-based stats. Identities = 47/223 (21%), Positives = 96/223 (43%), Gaps = 6/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D V+ + + G ++ ++ + +L S DV ++ L G G L Sbjct: 3 ILLVEDDPTVRAFVLKGLREAGHVVDEADNGKDGLFLAVSENYDVVILDRMLPG-GIDGL 61 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYR 117 + +R + P++ +S + + +G DD + KP E + + R Sbjct: 62 RILETLRGQKNATPVLLLSALADVDERVAGLKAGGDDYMTKPFAFSELLARVEALGRRGR 121 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 R G + + R + GE L RE R+LE+L+ + G+ V +T + + Sbjct: 122 PESAPQTRLVVGDLEMDLLSRTVKRGGEKIDLQPREFRLLEFLIRHAGQVVTRTMLLERV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + + NV++ H+S+LR+K+ + + R GY + Sbjct: 182 WD-YHFDPQTNVIDVHVSRLRQKVDKPFDKPMIHTIRNAGYIL 223 >gi|56420909|ref|YP_148227.1| two-component response regulator [Geobacillus kaustophilus HTA426] gi|56380751|dbj|BAD76659.1| two-component response regulator [Geobacillus kaustophilus HTA426] Length = 224 Score = 142 bits (357), Expect = 5e-32, Method: Composition-based stats. Identities = 44/222 (19%), Positives = 91/222 (40%), Gaps = 8/222 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD ++ + G E L S D ++ + Sbjct: 7 LIVDDEEEMRLLVGMYLENAGFRCLEAGDGEEALVLLSQHPVDAVLLDVM--MPKQDGFA 64 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRRL 119 + IR S VP++ ++ + G DD + KP E++AR+ +R+ Sbjct: 65 VCARIREQSDVPILFLTALGEEWDKVKGLKLGGDDYIVKPFSPGELIARLEAVLRRVQRV 124 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + ++ R + G + + GR V GE L +E +L +L +RG+ ++ + ++G Sbjct: 125 RENDGRLQFGDLAIDEKGRTVTVGGEAVKLTLKEFELLLFLAKHRGQVFSRDDLLVKVWG 184 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +D V++H+ LR KL++ + + +GY + Sbjct: 185 -YDYTGNARTVDTHVKTLRMKLKD--AARHIQTVWGIGYKFE 223 >gi|54308179|ref|YP_129199.1| putative two component response regulator transcription regulator protein [Photobacterium profundum SS9] gi|46912607|emb|CAG19397.1| Putative two component response regulator transcription regulator protein [Photobacterium profundum SS9] Length = 231 Score = 142 bits (357), Expect = 5e-32, Method: Composition-based stats. Identities = 39/227 (17%), Positives = 96/227 (42%), Gaps = 10/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + G +++ + + +S D+ ++ L Sbjct: 3 ILIIEDEIKAGQYLKKGLTESGYTVDLASDGVEGLYHATSHSYDLIILDIML--PKLDGW 60 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ + +R+ P+I ++ ++ + F+ G +D V KP E+LAR+ ++R Sbjct: 61 QILKTLRSSEMSTPVIMLTAKEQVEDRVKGFELGANDYVVKPYAFPELLARIQNVFRNHS 120 Query: 121 VSNNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + ++ R + L +E +LE LM +G+ +++T I Sbjct: 121 PKSKNISQSNTIVIADLQLDIIKRTATRNNQSITLTAKEYLLLELLMRKQGEVLSRTTIA 180 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 S ++ + + + NV++ + +LR K+ + + + R +GY ++ Sbjct: 181 SLVWDM-NFDSDTNVIDVAVKRLRSKIDRPFEKELIHTIRGMGYKLE 226 >gi|313885774|ref|ZP_07819521.1| putative sensory transduction protein RegX3 [Eremococcus coleocola ACS-139-V-Col8] gi|312619001|gb|EFR30443.1| putative sensory transduction protein RegX3 [Eremococcus coleocola ACS-139-V-Col8] Length = 216 Score = 142 bits (357), Expect = 5e-32, Method: Composition-based stats. Identities = 41/220 (18%), Positives = 100/220 (45%), Gaps = 7/220 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++++G + S+ ++ D+ I + + Sbjct: 3 ILIVEDDQMIREGVSEYLKEYNYSVIEAKDGAEALSKFNA---DIDLIILDIQLPIINGI 59 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + IR S +P+I ++ + +D F + D + KP + R+ + ++ Sbjct: 60 DVLKEIRKKSDLPVIMLTAFGDEDYKIDAFTNFADGYIQKPFSLPVLKVRIETLLKKYYG 119 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + ++ + V +++GE+ +E +L+YL +N G+ V ++QI ++ Sbjct: 120 TTDQFVYKDVEVNFLNYTAKLKGEIVDSKVKELEVLKYLSSNEGRVVTRSQILDNVWKDS 179 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 DE + V++ +I +LRKKL+ D + + R +GY ++ Sbjct: 180 DEIPFDRVIDVYIKELRKKLQL----DCIVTVRNVGYKLE 215 >gi|168183919|ref|ZP_02618583.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|237795806|ref|YP_002863358.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] gi|182672998|gb|EDT84959.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|229263831|gb|ACQ54864.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] Length = 235 Score = 142 bits (357), Expect = 5e-32, Method: Composition-based stats. Identities = 39/228 (17%), Positives = 81/228 (35%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + +G +E + ++ + Sbjct: 6 ILIVEDDVNINNMIKESLIKEGYDIEQAFHGLEAVEKFQGENYHMVIMDIM--MPVMDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI--------HHREILARVA 113 E R IR S+VP+I +S + G DD + KP I + Sbjct: 64 ESMRRIREKSKVPIIILSAKGEDSDKIIGLGMGADDYIVKPFSVPELIARVKCNIRRAIY 123 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + N E G ++ + G+ L +E +IL+ N + K QI Sbjct: 124 YNETKSIKENKIYEYGDVKFDMNNYTVTKGGKELTLTAKEMKILKLFFENPNRVFTKVQI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 + +++G + + N V H+ +LR K+ + +++ +GY + Sbjct: 184 YDSVWGE-EFLSDYNTVTVHMRRLRSKIEDDPNNPKLIETVWGIGYKL 230 >gi|197120859|ref|YP_002132810.1| transcriptional regulator [Anaeromyxobacter sp. K] gi|196170708|gb|ACG71681.1| two component transcriptional regulator, winged helix family [Anaeromyxobacter sp. K] Length = 230 Score = 142 bits (357), Expect = 5e-32, Method: Composition-based stats. Identities = 47/229 (20%), Positives = 95/229 (41%), Gaps = 11/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + G G +G ++ E L + + D+ ++ L L Sbjct: 5 ILVIEDDPSILRGLQLNLGMEGYTVRSATDGETGLQLARTEQPDLVVVDVML--PRMGGL 62 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R IR ++P++ +S + G DD + KP +E+LAR+ A+ RR + Sbjct: 63 EVVREIRKEDPELPILILSAKNQETDKVAGLQLGADDYLGKPFGLKELLARIDALLRRRR 122 Query: 121 VSNNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + IR D R V G L RE +L + + + + ++ Q+ Sbjct: 123 ARGEGVQPKAIRRAGGIELDLDARRALVDGRALDLTSREFDLLAFFVTHPDRVYSREQLM 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDW 222 A++G V++ +++LR + + +++ R +GY + Sbjct: 183 EAVWGSR-YFGTARTVDNFVARLRAHIGDDAEQPRHLETVRGIGYRFNV 230 >gi|94970017|ref|YP_592065.1| two component transcriptional regulator [Candidatus Koribacter versatilis Ellin345] gi|94552067|gb|ABF41991.1| two component transcriptional regulator, winged helix family [Candidatus Koribacter versatilis Ellin345] Length = 230 Score = 142 bits (357), Expect = 5e-32, Method: Composition-based stats. Identities = 46/225 (20%), Positives = 90/225 (40%), Gaps = 9/225 (4%) Query: 4 LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63 +++D A + G ++ F + ++ ++ + G LE+ Sbjct: 7 VVEDDADIARLVRYHLEGAGFAVRTFLTGNGVIPESEKTPPNLFLLDIMV--PGADGLEI 64 Query: 64 PRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 R IR P+I ++ S + D G DD + KP RE++AR+ A+ RR + Sbjct: 65 CRQIRHSRSIAMTPVIFLTAKTSEADKIAGLDLGADDYIAKPFSPRELIARIKAVLRRFE 124 Query: 121 VSNNRAETG--PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 A I + + V+G + E R+LEYL + G+ + Q+ A++ Sbjct: 125 RPLPPAVVTAGDIVIDNGAMTLTVRGNLVTTTATEFRLLEYLARHPGRVFTRDQLLDAVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDW 222 V V+ ++ ++R+K+ + + R GY + Sbjct: 185 RETHY-VTPRSVDVYVRRIREKIEENPEDPRYLKTVRGAGYRFEV 228 >gi|30020626|ref|NP_832257.1| two-component response regulator vanR [Bacillus cereus ATCC 14579] gi|206971406|ref|ZP_03232356.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|218236069|ref|YP_002367236.1| DNA-binding response regulator [Bacillus cereus B4264] gi|228921244|ref|ZP_04084572.1| Sensor histidine kinase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228958792|ref|ZP_04120503.1| Sensor histidine kinase [Bacillus thuringiensis serovar pakistani str. T13001] gi|229070036|ref|ZP_04203308.1| Sensor histidine kinase [Bacillus cereus F65185] gi|229079729|ref|ZP_04212262.1| Sensor histidine kinase [Bacillus cereus Rock4-2] gi|229109963|ref|ZP_04239543.1| Sensor histidine kinase [Bacillus cereus Rock1-15] gi|229127905|ref|ZP_04256890.1| Sensor histidine kinase [Bacillus cereus BDRD-Cer4] gi|229145142|ref|ZP_04273534.1| Sensor histidine kinase [Bacillus cereus BDRD-ST24] gi|229150755|ref|ZP_04278969.1| Sensor histidine kinase [Bacillus cereus m1550] gi|229178880|ref|ZP_04306240.1| Sensor histidine kinase [Bacillus cereus 172560W] gi|29896178|gb|AAP09458.1| Two-component response regulator vanR [Bacillus cereus ATCC 14579] gi|206733391|gb|EDZ50563.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|218164026|gb|ACK64018.1| DNA-binding response regulator [Bacillus cereus B4264] gi|228604645|gb|EEK62106.1| Sensor histidine kinase [Bacillus cereus 172560W] gi|228632842|gb|EEK89457.1| Sensor histidine kinase [Bacillus cereus m1550] gi|228638340|gb|EEK94778.1| Sensor histidine kinase [Bacillus cereus BDRD-ST24] gi|228655549|gb|EEL11402.1| Sensor histidine kinase [Bacillus cereus BDRD-Cer4] gi|228673484|gb|EEL28748.1| Sensor histidine kinase [Bacillus cereus Rock1-15] gi|228703569|gb|EEL56022.1| Sensor histidine kinase [Bacillus cereus Rock4-2] gi|228713079|gb|EEL64982.1| Sensor histidine kinase [Bacillus cereus F65185] gi|228800889|gb|EEM47795.1| Sensor histidine kinase [Bacillus thuringiensis serovar pakistani str. T13001] gi|228838414|gb|EEM83727.1| Sensor histidine kinase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 231 Score = 142 bits (357), Expect = 5e-32, Method: Composition-based stats. Identities = 44/230 (19%), Positives = 84/230 (36%), Gaps = 12/230 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD + + ++G ++ + S+ D+ ++ L Sbjct: 5 ILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQKVSTYEVDLMILDIM--MPKRNGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARVA 113 E+ + +R ++ VP++ +S + +G DD + KP + E + Sbjct: 63 EVCQEVRENNTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSF 122 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 K + + + +V GE L E IL L +N G+ + +I Sbjct: 123 QNATSQKNEDGIIRIRSVEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEI 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDW 222 F ++ D V HIS LR KL G + + +GY I+ Sbjct: 183 FERVWNE-DGYGSNKTVMVHISNLRDKLETVINGEKFIHTVWGVGYKIEK 231 >gi|30063407|ref|NP_837578.1| transcriptional regulatory protein YedW [Shigella flexneri 2a str. 2457T] gi|56480011|ref|NP_707854.2| transcriptional regulatory protein YedW [Shigella flexneri 2a str. 301] gi|161486196|ref|NP_754279.2| transcriptional regulatory protein YedW [Escherichia coli CFT073] gi|30041659|gb|AAP17387.1| putative 2-component transcriptional regulator [Shigella flexneri 2a str. 2457T] gi|56383562|gb|AAN43561.2| putative 2-component transcriptional regulator [Shigella flexneri 2a str. 301] gi|222033705|emb|CAP76446.1| transcriptional regulatory protein yedW [Escherichia coli LF82] gi|313649593|gb|EFS14017.1| transcriptional activator protein irlR [Shigella flexneri 2a str. 2457T] gi|323186723|gb|EFZ72045.1| transcriptional activator protein irlR [Escherichia coli RN587/1] gi|332757540|gb|EGJ87875.1| transcriptional activator protein irlR [Shigella flexneri K-671] gi|333003072|gb|EGK22626.1| transcriptional activator protein irlR [Shigella flexneri VA-6] gi|333003228|gb|EGK22774.1| transcriptional activator protein irlR [Shigella flexneri K-218] gi|333004084|gb|EGK23618.1| transcriptional activator protein irlR [Shigella flexneri K-272] gi|333017619|gb|EGK36931.1| transcriptional activator protein irlR [Shigella flexneri K-304] Length = 223 Score = 142 bits (357), Expect = 5e-32, Method: Composition-based stats. Identities = 49/219 (22%), Positives = 97/219 (44%), Gaps = 3/219 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D ++ + G ++ + +L + ++ L G Sbjct: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIML--PGMDGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + +R Q P+I ++ S+ + DSG +D + KP E+LARV A R+ Sbjct: 61 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 N+ E +++ S + L R+E ++L L + G+ + +T I S I+G+ Sbjct: 121 LNSTLEISGLKMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 179 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + N V+ I +LR K+ + + + R +GYS Sbjct: 180 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 >gi|84494699|ref|ZP_00993818.1| TcrA [Janibacter sp. HTCC2649] gi|84384192|gb|EAQ00072.1| TcrA [Janibacter sp. HTCC2649] Length = 231 Score = 142 bits (357), Expect = 5e-32, Method: Composition-based stats. Identities = 45/220 (20%), Positives = 95/220 (43%), Gaps = 5/220 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L++D + + +G ++ + +WL + DV ++ L G + Sbjct: 4 LLVEDEKALAETIRRGLTAEGFVVDVAHDGVTGQWLATENPYDVIVLDIML--PGRNGYD 61 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R +RA P + ++ D F+ G DD + KP ++AR+ A+ RR Sbjct: 62 VLRNLRALKVWAPAMMLTAKDGEYDQTDAFELGADDYLTKPFSFVVLVARLRALVRRGAP 121 Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + G + + + R G L +E +L++LM + ++K +I ++ Sbjct: 122 ARPVDLRVGGLLLDPNKRTVSRNGHAITLTAKEFSVLQFLMRHPEVVLSKAEILDNVWDQ 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +N+VE ++ LR+K+ G +++ R +GY + Sbjct: 182 A-FDGSDNIVEVYVGYLRRKIDQAFGVTSLETVRGMGYRL 220 >gi|309790025|ref|ZP_07684599.1| two component transcriptional regulator, winged helix family [Oscillochloris trichoides DG6] gi|308227880|gb|EFO81534.1| two component transcriptional regulator, winged helix family [Oscillochloris trichoides DG6] Length = 229 Score = 142 bits (357), Expect = 5e-32, Method: Composition-based stats. Identities = 46/224 (20%), Positives = 83/224 (37%), Gaps = 6/224 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++ DD + + G + E L + R D+ ++ L G + Sbjct: 4 ILVTDDDRQIVRLVSSYLEQAGYRVLTAYDGEATLRLARTERPDLLVLDLMLPDRDGYSI 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117 ++ R +P+I ++ + + G DD + KP + RE++ARV Sbjct: 64 VQTLRGDPHLGGMPIIMLTARVEDTDRIVGLELGADDYIGKPFNPREVVARVRAVLRRGA 123 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 R G I + D + G L E +L M N G + ++ Sbjct: 124 GPPQPPQRLSYGAISLDLDAHRATIAGAPLELTPSEFDLLALFMRNPGHAFTRLELIEQG 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 G + A E V+SHI LRKK+ + +++ +GY + Sbjct: 184 LG-YAYAGMERTVDSHIKNLRKKIERDPQAAPLIETVYGVGYRL 226 >gi|257063309|ref|YP_003142981.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Slackia heliotrinireducens DSM 20476] gi|256790962|gb|ACV21632.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Slackia heliotrinireducens DSM 20476] Length = 242 Score = 142 bits (357), Expect = 5e-32, Method: Composition-based stats. Identities = 42/224 (18%), Positives = 81/224 (36%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + G+ +S + + D+ I+ G Sbjct: 13 ILVVDDDQGITTLVAEVLASAGMDAAACHSGYDALDVFAKEPFDLVLIDIM--MPGMDGF 70 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL +R + P++ ++ + G DD + KP RE++AR+ A R Sbjct: 71 ELCANLRQVTDAPIVFLTAKDGESDLVVGLSLGADDYIVKPFRPRELVARIRARLRTPSA 130 Query: 122 SNNRAETGPIRVFS----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + + G L +E +L +L G+ V+ ++ Sbjct: 131 GAFEPSDVVVTRDFDINRRTHEAMLHGCRLDLTPKEFAVLLHLAERAGEPVSARDLYERA 190 Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 +G +A N V HI LRKK + +D+ +GY + Sbjct: 191 WGETYDASAGNTVMVHIRHLRKKCADVDSSQTFIDTVWGVGYRL 234 >gi|229017942|ref|ZP_04174820.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus AH1273] gi|229024164|ref|ZP_04180630.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus AH1272] gi|228737121|gb|EEL87650.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus AH1272] gi|228743367|gb|EEL93489.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus AH1273] Length = 224 Score = 142 bits (357), Expect = 5e-32, Method: Composition-based stats. Identities = 49/223 (21%), Positives = 93/223 (41%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + D +G ++ D+ ++ L G L Sbjct: 4 ILIIEDEESLADFLELELKYEGYKVDIQFDGRKGLDAALEKNYDLILLDLML--PGLNGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +RA P+I ++ S+ + DSG DD + KP E+LAR+ I+RR + Sbjct: 62 EVCRRLRATKNTPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARMRVIFRREEN 121 Query: 122 SNNRAETGPIRVF----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + + + R E L +E +L M N + + + + + Sbjct: 122 TEQKHPSFLTFKDLQLQIESRTITKGNEEIELTNKEFELLFMFMKNINRVLTRDILLDQV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G +D VE N+V+ ++ LR KL + + + + R GY + Sbjct: 182 WG-YDAMVETNIVDVYVRYLRNKLHSVDKEEYIQTVRGAGYIM 223 >gi|229075281|ref|ZP_04208274.1| Two-component response regulator [Bacillus cereus Rock4-18] gi|228707832|gb|EEL60012.1| Two-component response regulator [Bacillus cereus Rock4-18] Length = 228 Score = 142 bits (357), Expect = 5e-32, Method: Composition-based stats. Identities = 50/227 (22%), Positives = 94/227 (41%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ ++G+ + L D+ ++ + Sbjct: 5 ILIVDDDKEIRNLISVYLENEGLKTQKAEDAMEALKLLEEKEFDLIILDIM--MPNMDGI 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E IR +P+I +S + SG DD ++KP + E++ARV + RR K Sbjct: 63 EACMKIREDRNIPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 122 Query: 122 SNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N + V +D R V+G+ L +E ILE L+ N+G ++ +I+ Sbjct: 123 YNTPIDHNKSILEIGDLTVNTDTRQVWVRGKETRLTPKEFDILELLVRNKGIVLSVAKIY 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220 A++ +N V HI+K+R K+ + + +GY I Sbjct: 183 EAVWKEV-FYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGVGYKI 228 >gi|167647856|ref|YP_001685519.1| two component transcriptional regulator [Caulobacter sp. K31] gi|167350286|gb|ABZ73021.1| two component transcriptional regulator, winged helix family [Caulobacter sp. K31] Length = 226 Score = 142 bits (357), Expect = 5e-32, Method: Composition-based stats. Identities = 55/221 (24%), Positives = 102/221 (46%), Gaps = 9/221 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + GD G +++ E ++L + D ++ L + Sbjct: 3 ILLVEDDPDLSRQLKLALGDAGYAVDHAPDGEEAQFLGENEPYDAVVLDLGL--PKVDGV 60 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R + P++ ++ S + FD+G DD + KP H E+LAR+ A+ RR Sbjct: 61 SVLERWRRGNIATPVLILTARGSWNEKVAGFDAGADDYLTKPFHTEELLARLRALLRRSA 120 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++ G +R+ V GE L E R+L Y+M ++G+ + +T++ +Y Sbjct: 121 GHASPSLSCGGLRLDPRAARASVNGEPLRLTSLEYRLLHYMMMHQGRVIGRTELVEHLYD 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D + N +E I +LRKKL G + +++ R LGY + Sbjct: 181 Q-DFDRDSNTIEVFIGRLRKKL----GAERIETVRGLGYRL 216 >gi|116624553|ref|YP_826709.1| two component transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116227715|gb|ABJ86424.1| two component transcriptional regulator, winged helix family [Candidatus Solibacter usitatus Ellin6076] Length = 229 Score = 142 bits (357), Expect = 5e-32, Method: Composition-based stats. Identities = 49/221 (22%), Positives = 93/221 (42%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + V + +++ E + + D+ ++ L K Sbjct: 3 ILLVEDESRVAGFLAKGLREQAYAVDLAADGESALYQAAVNHYDLVILDVMLPLK--NGY 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R +RA P++ ++ S+ + DSG DD + KP +E+LAR+ A+ RR Sbjct: 61 AVCRELRAAGFSAPILMLTARDSIDDRVAGLDSGADDYLVKPFDFKELLARLRALSRRSG 120 Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 A V + E G + L +E +LE+LM N+ + V + I ++ Sbjct: 121 DPRPEALRVADLTVNTASHAVERGGRIISLTAKEYALLEFLMLNQDRVVGREAIAQHVW- 179 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 NV++ +I +LR KL + ++R GY + Sbjct: 180 EETFDAFTNVIDVYIKRLRAKLDGPGSPRLIHTRRGEGYIL 220 >gi|332708796|ref|ZP_08428767.1| two component transcriptional regulator, winged helix family [Lyngbya majuscula 3L] gi|332352338|gb|EGJ31907.1| two component transcriptional regulator, winged helix family [Lyngbya majuscula 3L] Length = 245 Score = 142 bits (357), Expect = 5e-32, Method: Composition-based stats. Identities = 46/228 (20%), Positives = 89/228 (39%), Gaps = 9/228 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++IDD + + G + + L + D+ ++ L G V Sbjct: 4 ILVIDDDPAISELVTINLEMAGYDVSQAMDGIKGQALALQLQPDLIMLDLMLPKVDGFTV 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R S +P++ ++ Q ++ F++G DD + KP E+LARV A+ RR Sbjct: 64 CQRLRRDERTSDIPVLMLTALGQTQDKVEGFNAGADDYLTKPFELEEMLARVRALLRRTD 123 Query: 121 VSNNRAETGPIRVF------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 A+ I + + + + L E +L L+ G+ V+ ++I Sbjct: 124 RIPQAAKHTEILNYGPLTLVPERFEAIWFDKTVKLTHLEFELLHCLLQRHGQTVSPSEIL 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 ++G +D + + HI LR KL + + GY ++ Sbjct: 184 KEVWG-YDPDDDIETIRVHIRHLRTKLEPDPRHPKYIKTVYGAGYCLE 230 >gi|226310588|ref|YP_002770482.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226093536|dbj|BAH41978.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 239 Score = 142 bits (357), Expect = 5e-32, Method: Composition-based stats. Identities = 50/236 (21%), Positives = 89/236 (37%), Gaps = 23/236 (9%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS-AREDVSAIEAFLIGKGEKV 60 +++DD + + + ++G S+ S E L S R ++ ++ Sbjct: 5 ILIVDDNLEIIELLEDILENEGFSVSSAESGEDALSLLSQGERPNLILLDIM--MPNMSG 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL IR +P++ +S + F+ G DD + KP E+LAR+ A RR + Sbjct: 63 YELCSQIRREWDLPILFLSAKGKAVDKVVGFEIGADDYITKPFDTEELLARIRAHLRRYE 122 Query: 121 VSNNRAETGPIR----------------VFSDGRDPEVQGEVFPLPRRERRILEYLMANR 164 E P + + + V + L +E ++L +L N Sbjct: 123 RIRKHTEEQPEKETASSPITVLKFKDLEIHKETYSVYVCNQKIELSTKEFQLLTFLAENA 182 Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G + QI+ ++G N V HI LR+KL + ++ GY Sbjct: 183 GIVFTREQIYDRVWGYG--YGSLNTVTVHIKNLREKLE--TERQFIKTQWGTGYVF 234 >gi|153003748|ref|YP_001378073.1| two component transcriptional regulator [Anaeromyxobacter sp. Fw109-5] gi|152027321|gb|ABS25089.1| two component transcriptional regulator, winged helix family [Anaeromyxobacter sp. Fw109-5] Length = 234 Score = 142 bits (357), Expect = 5e-32, Method: Composition-based stats. Identities = 53/223 (23%), Positives = 95/223 (42%), Gaps = 8/223 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L++D + D G+++ S R + ++ L G+ LE Sbjct: 10 LLVEDDRRLADLTREYLEGHGLAVVHVADGRRGLEEALSGRYEAVLLDLML--PGKDGLE 67 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +RA S VP+I ++ + + G DD + KP RE+LAR+ AI RR + Sbjct: 68 VCRELRARSDVPVIVLTARGEEADRVLGLELGADDYLAKPFSPRELLARIRAIVRRARGR 127 Query: 123 NNRAETGPI----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 A + V R + G L E +L+ L G+ +++ Q+ Sbjct: 128 AGPAASTLRVGGLVVDPGARRVTLDGREIALTGYEFALLDALARRAGRVLSREQLMELAG 187 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 G +EA + ++ H+S+LR+KL + + + R GY + Sbjct: 188 GSAEEAFD-RSIDVHVSRLRQKLGDDPKRPRLIKTVRGAGYLL 229 >gi|332185053|ref|ZP_08386802.1| phosphate regulon transcriptional regulatory protein PhoB [Sphingomonas sp. S17] gi|332014777|gb|EGI56833.1| phosphate regulon transcriptional regulatory protein PhoB [Sphingomonas sp. S17] Length = 230 Score = 142 bits (357), Expect = 5e-32, Method: Composition-based stats. Identities = 54/222 (24%), Positives = 101/222 (45%), Gaps = 4/222 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVL 61 +L++D A + + + F + + E L D+ ++ + G G +V Sbjct: 7 LLVEDDAALAELLVFHFKREDFEVVHTPDGEEALLLARENTPDIVLLDWMVEGISGIEVC 66 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 R + VP+I ++ + + ++G DD V KP RE++ARV A+ RR++ Sbjct: 67 RRLRRAPETANVPIIMLTARGEEEDRVRGLETGADDYVTKPFSPRELVARVGAVLRRVRP 126 Query: 122 SNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + I + + G GEV L E R+L++ + + G ++ ++ A++G Sbjct: 127 ALAGEALVYADIEMDTVGHKVRRAGEVVSLGPTEFRLLKHFLEHPGWVFSRERLLDAVWG 186 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D +E V+ HI +LRK + D + + R GYS+D Sbjct: 187 -HDSDIESRTVDVHIRRLRKAINIGDRPDIIRTVRSAGYSLD 227 >gi|325263883|ref|ZP_08130616.1| subtilin biosynthesis regulatory protein SpaR [Clostridium sp. D5] gi|324030921|gb|EGB92203.1| subtilin biosynthesis regulatory protein SpaR [Clostridium sp. D5] Length = 224 Score = 142 bits (357), Expect = 5e-32, Method: Composition-based stats. Identities = 46/221 (20%), Positives = 86/221 (38%), Gaps = 7/221 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD + F G + ++ QSS D+ ++ G Sbjct: 5 ILVADDEPGIVQLLRDYFEMQGYEVASASNGVEALD-QSSHNPDLILLDVN--MPGIDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R+IR H P++ ++ Q + G DD + KP E+ ARV A RR + Sbjct: 62 EVCRMIRDHVSCPILFLTAKVEEQDRIQGLMLGGDDYILKPFSIDELGARVEAHLRREER 121 Query: 122 SNNRAETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + R G L + E I+E L + G+ + Q++ + Sbjct: 122 RSQSQAVKIQGSLAIHYTERSVYYDGRALNLTKTEFNIVELLSMHSGQVFTREQVYDRVR 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 G +D + ++V HI ++R K+ +++ +GY Sbjct: 182 G-YDGDGDSSIVTEHIRRIRAKMSAVSEKQYIETVWGVGYK 221 >gi|291458739|ref|ZP_06598129.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Oribacterium sp. oral taxon 078 str. F0262] gi|291418656|gb|EFE92375.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Oribacterium sp. oral taxon 078 str. F0262] Length = 247 Score = 142 bits (357), Expect = 5e-32, Method: Composition-based stats. Identities = 41/228 (17%), Positives = 82/228 (35%), Gaps = 10/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD + + ++ + S + ++ G Sbjct: 21 ILVIDDDRELCTLIRRTVSQEDIAADCCYSGRAGLEKLKENEYQLVILDVM--MPGFDGF 78 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115 E IR S VP++ + + + +G DD + KP E+ L R Sbjct: 79 ETLAQIRKESGVPVLMFTAKNDSSSKVRGLRNGADDYLTKPFVMEELLARIVSLIRRYTR 138 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + + D R + F L +E +L + N+G+ + K QI+ Sbjct: 139 FNPNGSDAKTLSYDGLMIDLDARSVTTENGTFELLPKEFDVLLHCAKNQGRILTKRQIYE 198 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 ++G + N++ IS+LRKKL + + + + +GY + Sbjct: 199 EVWGEAYVYGDSNIMAV-ISRLRKKLEADPKNPKYIQTVKGVGYRFNK 245 >gi|188585544|ref|YP_001917089.1| two component transcriptional regulator, winged helix family [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350231|gb|ACB84501.1| two component transcriptional regulator, winged helix family [Natranaerobius thermophilus JW/NM-WN-LF] Length = 234 Score = 142 bits (357), Expect = 5e-32, Method: Composition-based stats. Identities = 46/224 (20%), Positives = 85/224 (37%), Gaps = 9/224 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++I+D + A +G + + L D+ ++ L E Sbjct: 11 LIIEDEQGLVKVLKAYLEKEGYQVYASHDGLAGLELFKKQNPDIVVLDLML--PNMSGEE 68 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR + P++ ++ S + G DD V KP REI+AR+ I RR+ Sbjct: 69 IARKIRKEQETPILMLTAKGSEDEKITGLGIGADDYVVKPASPREIIARLKTILRRVGKE 128 Query: 123 NNRAETG-----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 R + I + + + ++G L + E IL L K ++ + I Sbjct: 129 PGRIQQEIITAGEITIDTLAKKIYLRGTEISLTQTEFDILSTLALYPKKVFSRENLADRI 188 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220 YG + + +++HI LR+K+ + + GY Sbjct: 189 YG-YLWEGDSRTIDTHIKNLRRKIEQNPKKPIFIKTVFGAGYQF 231 >gi|119945892|ref|YP_943572.1| two component transcriptional regulator, winged helix family protein [Psychromonas ingrahamii 37] gi|119864496|gb|ABM03973.1| two component transcriptional regulator, winged helix family protein [Psychromonas ingrahamii 37] Length = 227 Score = 142 bits (357), Expect = 5e-32, Method: Composition-based stats. Identities = 40/222 (18%), Positives = 93/222 (41%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D ++D + G ++ + D+ ++ G G K+ Sbjct: 5 ILVVEDEVAIRDMLCFVLDQHGYECIEADTYQSALNQLHEPYPDLILLDWMFPGGSGIKL 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L + +P++ ++ Q + ++G DD V KP +E++AR+ + RR+ Sbjct: 65 LSHLKQDNILRSIPVVMLTARGEEQDKVRGLENGADDYVTKPFSPKELMARLKTVMRRVN 124 Query: 121 VSNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++ E +++ + E + E +L + M + + ++ Q+ + ++ Sbjct: 125 PTSLDDELSFNKLKLDPVSHRVSLADEALNMGPTEFNLLHFFMTHPERVYSREQLLNNVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G + VE+ V+ HI +LRK L + + + R GY Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALADHDH--LIQTVRGAGYRF 223 >gi|239627954|ref|ZP_04670985.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239518100|gb|EEQ57966.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 236 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 43/233 (18%), Positives = 83/233 (35%), Gaps = 16/233 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D +++G G + D++ ++ + Sbjct: 6 ILLVEDDKEIREGVEIFLKSQGYVVFQAADGLEGLKALEDNEIDLAIVDVM--MPKMDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + +R P+I +S + + G DD + KP E+LARV + RR Sbjct: 64 TMTAKLREKYDFPVIFLSAKSEEVDKILGLNMGADDYITKPFTPMELLARVNSHLRRYHR 123 Query: 122 S-----------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 G + V + + V + + E +IL L+ N G+ Sbjct: 124 FLDRLSSKQAEDPRIHRLGGLEVNEETVEVMVDDKPVKVTPIEFKILLLLIQNPGRVFPA 183 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 +I+ ++ + A+ + V HI LR+K+ N V +GY I+ Sbjct: 184 EEIYERVWN--ERAINTDTVMVHIRNLREKIEVNPREPKYVKVVWGVGYKIEK 234 >gi|116627234|ref|YP_819853.1| DNA-binding response regulator [Streptococcus thermophilus LMD-9] gi|116100511|gb|ABJ65657.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Streptococcus thermophilus LMD-9] Length = 229 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 38/225 (16%), Positives = 86/225 (38%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G + ++ + D+ ++ L Sbjct: 5 ILIVEDERNLARFVSLELQHEGYDVVTADNGREGLEMALEKDFDLILLDLML--PEMDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI------HHREILARVAAI 115 E+ R ++ ++ ++ S+ + D G D+ + KP R I Sbjct: 63 EVTRRLQQEKDTYIMMMTARDSIMDIVAGLDRGADEYIIKPFAIEELLARIRATFRRQDI 122 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 K + +++ R EV PL +RE +L L++N + + + ++ Sbjct: 123 EATKKAPAKASTYRDLKLDVQNRAVVRGDEVIPLTKREFDLLNTLLSNMNQVMTREELLL 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +D+ +E NVV+ +I LR K+ + + R +GY I Sbjct: 183 QVW-KYDDVIETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 226 >gi|330827912|ref|YP_004390864.1| winged helix family two component transcriptional regulator [Aeromonas veronii B565] gi|328803048|gb|AEB48247.1| Two component transcriptional regulator, winged helix family [Aeromonas veronii B565] Length = 240 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 44/229 (19%), Positives = 89/229 (38%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + ++D G+ + + + L D+ ++ GE L Sbjct: 8 ILVVDDHSEIRDLLKRFLEQHGLRVSCARDGKEMKRLLEEREFDLLVLDLM--MPGEDGL 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R +R S +P+I ++ + + G DD + KP + RE+LAR+ A+ RR + Sbjct: 66 TLCRELRVKSNLPIIMLTAMGEETDRIIGLEMGADDYLAKPFNPRELLARIKAVMRRTQA 125 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF---------PLPRRERRILEYLMANRGKRVAKTQ 172 A R R L E +L+ + + +++ Q Sbjct: 126 ETQPAAETLTRDLRFDRWLLDVNRRELVDEDGVGLSLSTAEFDLLKVFLERPQRVLSRDQ 185 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + G A + +++ +S+LR+KL + + + + GY Sbjct: 186 LLDLARGREAVAFD-RAIDTLVSRLRRKLERDPKNPELIKTIWGGGYMF 233 >gi|331699380|ref|YP_004335619.1| winged helix family two component transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326954069|gb|AEA27766.1| two component transcriptional regulator, winged helix family [Pseudonocardia dioxanivorans CB1190] Length = 229 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 57/227 (25%), Positives = 101/227 (44%), Gaps = 11/227 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D D L +G + + + D+ ++ L G + Sbjct: 5 LIVEDEESFADPLAFLLRKEGFTAAVATTGQSALEEFDRNGADIVLLDLML--PGMSGTD 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +R+ S VP+I ++ S + + G DD V KP RE++AR+ A+ RR Sbjct: 63 VCRSLRSRSAVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGEG 122 Query: 123 NNRAETG-------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 AE G P+R+ D V G PLP +E +LEYL+ N G+ + + Q+ Sbjct: 123 GAEAEGGGGVLEAGPVRMDVDRHVVSVGGADVPLPLKEFDLLEYLLRNVGRVLTRGQLID 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 ++G D + ++ H+ +LR K+ + + + R LGY D Sbjct: 183 RVWGA-DYVGDTKTLDVHVKRLRSKVEVDPSVPRHLITVRGLGYKFD 228 >gi|292488737|ref|YP_003531624.1| putative transcriptional regulator Ycf27 [Erwinia amylovora CFBP1430] gi|292899893|ref|YP_003539262.1| two-component response regulator [Erwinia amylovora ATCC 49946] gi|291199741|emb|CBJ46861.1| two-component response regulator [Erwinia amylovora ATCC 49946] gi|291554171|emb|CBA21385.1| probable transcriptional regulator ycf27 [Erwinia amylovora CFBP1430] Length = 235 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 42/223 (18%), Positives = 85/223 (38%), Gaps = 5/223 (2%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + ++++D + I + D+ ++ L Sbjct: 9 LILIVEDEPKLGQLMIDYLQAANYRTHHLLRGDEVVDWVKQHAPDMVLLDLMLPA--MDG 66 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L + R +R S++P++ ++ L + G DD + KP RE++ARV I +R + Sbjct: 67 LSVCRELRRFSELPVVMVTAKIEEIDRLLGLEIGADDYICKPFSPREMVARVKTILKRCR 126 Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 T + + L E R+L+ L GK ++ Q+ + +Y Sbjct: 127 RVTEETLTISPLLIDERRFQASWGEKPLDLTPAEFRLLKTLAQQPGKVFSREQLLNHLYD 186 Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + V + ++SHI LR+KL + + + +GY + Sbjct: 187 DY-RVVTDRTIDSHIKNLRRKLESLDAEQPFIRAVYGIGYRWE 228 >gi|239617104|ref|YP_002940426.1| two component transcriptional regulator, winged helix family [Kosmotoga olearia TBF 19.5.1] gi|239505935|gb|ACR79422.1| two component transcriptional regulator, winged helix family [Kosmotoga olearia TBF 19.5.1] Length = 226 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 46/223 (20%), Positives = 100/223 (44%), Gaps = 11/223 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + ++ NS + D+ ++ L L Sbjct: 3 ILVVDDDPDILNIVKTACEQECFNVRTANSARNMWEALENDPPDLIVLDIML--PDASGL 60 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ + ++ ++P+I ++ S + + G DD + KP + R ++AR+ A+ RR + Sbjct: 61 DVIKKLKRKYEEIPVIFLTARKSDLDMILGLELGADDYITKPFNPRTLIARIKAVSRRYE 120 Query: 121 VSNNRAETG---PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + I + + G+ LPR+E +L+ ++ N GK + +I + Sbjct: 121 MGPKDRNVVKLGDIEIDMNSYSMIKDGKKEELPRKEFELLKLMIENPGKVFNRQEILDRV 180 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G+ D + V+ HISKLR+K+ G + + + R +GY + Sbjct: 181 WGM-DFFGDFRTVDVHISKLREKI----GSEFIKTVRGVGYKL 218 >gi|229173212|ref|ZP_04300761.1| Sensor histidine kinase [Bacillus cereus MM3] gi|228610296|gb|EEK67569.1| Sensor histidine kinase [Bacillus cereus MM3] Length = 231 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 44/230 (19%), Positives = 84/230 (36%), Gaps = 12/230 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD + + ++G ++ + + S+ D+ ++ L Sbjct: 5 ILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQIISTYEVDLMVLDIM--MPKRNGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARVA 113 E+ + +R ++ VP++ +S + +G DD + KP + E + Sbjct: 63 EVCQEMRENNTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSF 122 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 K + + +V GE L E IL L +N G+ + +I Sbjct: 123 QNATSSKNEDGIIRIRSAEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEI 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222 F ++ D V HIS LR KL G + + +GY I+ Sbjct: 183 FERVWNE-DGYGSNKTVMVHISNLRDKLETGMNGEKFIHTVWGVGYKIEK 231 >gi|308069099|ref|YP_003870704.1| sensory transduction protein [Paenibacillus polymyxa E681] gi|305858378|gb|ADM70166.1| Hypothetical sensory transduction protein [Paenibacillus polymyxa E681] Length = 233 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 36/225 (16%), Positives = 85/225 (37%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G ++ + + + D+ ++ L Sbjct: 4 ILIVEDDPQISSLLQSYLEKYGYQGINVSNFDQVLAIFQEVKPDLVLLDVNL--PRFDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115 R IR S P++ +S + +G DD + KP + + R A Sbjct: 62 YWCRQIRTQSTCPILFVSARDDKMDQVIALQNGADDYITKPFYPEVLLAKVESNLRRAYG 121 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + + + ++ D + + + ++E +LE LM + V + + Sbjct: 122 SYAVAPKSRSLKVADLTLYPDIMELVFYDKQVEISQKEAALLELLMTYPKQVVGRVHLLE 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 A++ V EN + +++++RKKL D +++ R GY + Sbjct: 182 ALWDDHQY-VGENTLNVYVTRVRKKLSELGLGDIIETVRGAGYRL 225 >gi|260891405|ref|ZP_05902668.1| DNA-binding response regulator ResD [Leptotrichia hofstadii F0254] gi|260858788|gb|EEX73288.1| DNA-binding response regulator ResD [Leptotrichia hofstadii F0254] Length = 229 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 49/224 (21%), Positives = 89/224 (39%), Gaps = 8/224 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++ DD + + ++ E D+ ++ + + Sbjct: 5 LIADDNKQIVSILSEYCKKNNFTVSTVFDGEAALKEIEENEFDIILLDVM--MPKKDGFD 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +R S VP+I I+ + + G DD + KP EI+AR+ AI RR+ Sbjct: 63 VCRQVRTFSNVPIIMITARGEDYEKIMGLEIGADDYIVKPFSPGEIIARINAILRRITPK 122 Query: 123 NN----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 N+ + + + ++ E+ L ++E IL L N+ K + + I+ Sbjct: 123 NDESAKIFIYDNLEIDLNNFTVKINDEIISLTKKEIEILWTLATNQNKVFTRENLLDLIW 182 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221 G FD E V++HI +LR KL N + + +GY D Sbjct: 183 G-FDYFGESRTVDTHIKRLRAKLDNYKHDKWNIKTIWGVGYKFD 225 >gi|296128518|ref|YP_003635768.1| two component transcriptional regulator, winged helix family [Cellulomonas flavigena DSM 20109] gi|296020333|gb|ADG73569.1| two component transcriptional regulator, winged helix family [Cellulomonas flavigena DSM 20109] Length = 235 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 53/229 (23%), Positives = 97/229 (42%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D +D G +G + + + D+ ++ L G Sbjct: 4 ILLVEDEESYRDPLSYQLGREGYDVVTAATGPEALERFAEHGADLVLLDLML--PGLPGT 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R S VP+I ++ + + G DD V KP RE+LAR+ A+ RR Sbjct: 62 EVCRRLRLDSDVPVIMLTAKDDEIDKVVGLELGADDYVTKPYSSRELLARIRAVLRRRDT 121 Query: 122 SNNRAETGPI---------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 S A+ R+ D V GE+ P P +E +LE L+ N + + + Q Sbjct: 122 SARPADDPEDDGVLEVGAVRMDVDRHTVHVHGELVPFPLKEFELLELLLRNPDRVLTRGQ 181 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + ++G D + ++ H+ ++R K+ + + + R LGY + Sbjct: 182 LIDRVWG-SDYVGDTKTLDVHVKRIRAKIERDPSAPTLLTTVRGLGYKL 229 >gi|229171692|ref|ZP_04299267.1| hypothetical protein bcere0006_8130 [Bacillus cereus MM3] gi|228611838|gb|EEK69085.1| hypothetical protein bcere0006_8130 [Bacillus cereus MM3] Length = 231 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 87/228 (38%), Gaps = 10/228 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + D ++ ++ + + + D++ ++ L L Sbjct: 6 LVVDDEREIADLVELYLKNENYTVFKYYTAKEALECIDKTELDIAILDIML--PDASGLT 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + IR P+I ++ + + G DD + KP E++ARV A RR K Sbjct: 64 ICQKIRDKHTYPIIMLTAKDTEIDKITGLTIGADDYITKPFRPLELIARVKAQLRRYKKY 123 Query: 123 NNRAETGPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 N + + + + L E IL L N+G V+ Q+F Sbjct: 124 NGVMAQNKNVIVHSGLVINISTHECSLNEKPLSLTPTEFSILRILCENKGNVVSSEQLFR 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDW 222 I+G + N + HI LR+K+ + + + +GY I+ Sbjct: 184 EIWGDEYFSKSNNTITVHIRHLREKMNDTIDNPKYIKTVWGIGYKIEK 231 >gi|118471457|ref|YP_890099.1| DNA-binding response regulator PhoP [Mycobacterium smegmatis str. MC2 155] gi|118172744|gb|ABK73640.1| DNA-binding response regulator PhoP [Mycobacterium smegmatis str. MC2 155] Length = 239 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 49/224 (21%), Positives = 87/224 (38%), Gaps = 10/224 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD A + + G + ++ R D ++ G Sbjct: 16 LVVDDEANIVELLSVSLKFQGFEVHTASNGAAALDKAREVRPDAVILDVM--MPGMDGFG 73 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPI-----HHREILARVAAIY 116 L R +RA P + ++ SLQ + G DD V KP R + + Sbjct: 74 LLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRSGR 133 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + N R I + D + GE L E +L Y + N G ++K +I Sbjct: 134 GVEETRNARLTFADIELDEDTHEVWKAGEPVSLSPTEFTLLRYFIINAGTVLSKPKILDH 193 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +D + NVVES++S LR+K+ + + + R +GY + Sbjct: 194 VW-RYDFGGDVNVVESYVSYLRRKI-DTGEKRLLHTLRGVGYVL 235 >gi|88855607|ref|ZP_01130270.1| two-component system, regulatory protein [marine actinobacterium PHSC20C1] gi|88814931|gb|EAR24790.1| two-component system, regulatory protein [marine actinobacterium PHSC20C1] Length = 226 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 42/220 (19%), Positives = 81/220 (36%), Gaps = 5/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + +G SA D+ ++ L G + Sbjct: 5 ILVVDDDTALAEMIGIVLRTEGYEPFFCQDGALALDAFKSAAPDLVLLDLML--PGMDGI 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ IR S VP+I ++ + +SG DD V KP + +E++ARV R Sbjct: 63 EICARIREESGVPIIMLTAKSDTADVVKGLESGADDYVVKPFNPKELVARVRTRLRPASD 122 Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + T + G + L E +L L + + + ++G Sbjct: 123 AATGTLTVGDLELDVTGHEVRRGESKINLTPLEFELLLALAMKPEQVFTREMLLEQVWG- 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVD-SKRFLGYS 219 + + +V H+ +LR K+ + + R +GY Sbjct: 182 YHYKADTRLVNVHVQRLRAKVEEDPDNPKIVMTVRGVGYR 221 >gi|330958496|gb|EGH58756.1| DNA-binding response regulator BaeS [Pseudomonas syringae pv. maculicola str. ES4326] Length = 226 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 44/221 (19%), Positives = 83/221 (37%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + G S + ++ + ++ L G + Sbjct: 9 ILIVEDEPKLATLMRDYLIAAGYSTHCLANGLDVVPAVRTSAPQLILLDIML--PGRDGM 66 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + +R+ S VP+I I+ L D G DD + KP RE + R Sbjct: 67 DICKELRSFSAVPIIMITARVEEIDRLLGLDLGADDYICKPFSPRE-MVARVKAILRRTS 125 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + ++V G L E R+L + G+ ++ + +Y Sbjct: 126 AADPQAAKGLQVDEAHYQASFNGVTLDLTPVELRLLATFARSPGRVFSRDHLLDRLYSDH 185 Query: 182 DEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221 V + V+SHI LR+KL G DP+ S +GY ++ Sbjct: 186 -RVVTDRTVDSHIRNLRRKLEQACPGQDPIQSLYGVGYKLE 225 >gi|324998685|ref|ZP_08119797.1| putative OmpR family two-component response regulator [Pseudonocardia sp. P1] Length = 226 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 52/221 (23%), Positives = 90/221 (40%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + + +G +E + S R DV ++ L G Sbjct: 3 LLLVEDEKPLAELVRRGLAAEGHEIELAHDGNTGLQYALSGRHDVIVLDIML--PGLSGY 60 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + + +R P++ ++ D FD G DD + KP +LAR+ A+ RR Sbjct: 61 RILQHLRDRGVWTPVLMLTAKDGEYDEADAFDLGADDYLTKPFSFVVLLARLRALLRRAG 120 Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S + L RE +LE+LMA+ G+ V KT I +++ Sbjct: 121 ESAPTVLRVGDLSLDPATHRVHRGDVEISLTPREFGVLEHLMAHPGQVVTKTDILRSVWD 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 E NVVE ++ LR+K+ G +++ R +GY + Sbjct: 181 AH-YDGEVNVVEVYVGYLRRKIDAPFGTHSIETLRGVGYRM 220 >gi|332654980|ref|ZP_08420722.1| DNA-binding response regulator [Ruminococcaceae bacterium D16] gi|332516323|gb|EGJ45931.1| DNA-binding response regulator [Ruminococcaceae bacterium D16] Length = 230 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 40/228 (17%), Positives = 87/228 (38%), Gaps = 10/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD + + + + N+ + + ++ G Sbjct: 4 ILIIDDDRELCALIKRSVQSEHIEADFCNTGKEGLQKLKEQEYQLVVLDVM--MPGMDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL------ARVAAI 115 E IR + +P++ + + + +G DD + KP E++ R Sbjct: 62 ETLEEIRKENSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRRYTR 121 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + + + +++ + R F LP +E +L Y ++GK + K QI+ Sbjct: 122 FNHQAGAMQKLDFDGLQIDLENRSVTTANGTFELPPKEFDLLLYCAKHQGKILTKQQIYE 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 ++G + N + + IS+LRKKL N + + + +GY + Sbjct: 182 EVWGEEYFYDDSN-IMAIISRLRKKLEVNPSSPKYIQTVKGIGYRFNK 228 >gi|302528568|ref|ZP_07280910.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. AA4] gi|302437463|gb|EFL09279.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. AA4] Length = 244 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 49/218 (22%), Positives = 90/218 (41%), Gaps = 8/218 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + + DG +E R ++ L G +E Sbjct: 28 LVVEDETAIAELAALYLRRDGFGVEVEPDGAKALAAIRRLRPVAVVLDIGL--SGMDGIE 85 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120 + R +RA P++ ++ L + G DD + KP RE+ ARV + R Sbjct: 86 ICRALRAAGDWTPVLFVTARDDELDRLLGLEIGADDYLTKPFSPRELAARVRTVLRRASG 145 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 G +R+ GR L E +L YL+ + G+ +++ Q+ SA++G Sbjct: 146 SPATTLACGGVRIDVPGRRAWAGEAEVALTSTEFDLLAYLLRHPGQVLSRDQLLSAVWG- 204 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + A V+ H+++LR KL + P+ + R +GY Sbjct: 205 YAAAAGTRTVDVHVAQLRAKLGDDS---PIRTVRGIGY 239 >gi|229825423|ref|ZP_04451492.1| hypothetical protein GCWU000182_00782 [Abiotrophia defectiva ATCC 49176] gi|229789986|gb|EEP26100.1| hypothetical protein GCWU000182_00782 [Abiotrophia defectiva ATCC 49176] Length = 239 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 45/230 (19%), Positives = 89/230 (38%), Gaps = 12/230 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD + F +G + + + + + + ++ + Sbjct: 11 ILVCDDEKDIVSAIKIYFEAEGYKVFTAENGKEALSIAAKEEIHLILMDVM--MPVMDGI 68 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R +R S +P+I ++ + G DD V KP + E++AR + RR Sbjct: 69 QTVRKLREDSIIPVIMLTAKSEDVDKVLGLGIGADDYVTKPFNPIELIARAKSQIRRYVR 128 Query: 122 SNNRAETGPIRV--------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 +A +V + ++ +V GE L +E IL+ LM +G+ + I Sbjct: 129 FGGQAGKPADKVLTLDGLVLDDNAKEVQVDGEKVDLTPKEFEILKMLMLEKGRVFSPETI 188 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 + ++G + E+ V HI LR+K+ N + GY +D Sbjct: 189 YRKVWGE-EPYGSESTVAVHIRHLREKIEINPSEPRFIKVVWGQGYKVDK 237 >gi|159030857|emb|CAO88536.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 246 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 48/228 (21%), Positives = 88/228 (38%), Gaps = 9/228 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++IDD + + G + + L + D+ ++ L G V Sbjct: 4 ILVIDDDPAIAELVSINLEMAGYDVNPAEDGIKGQALAVQLQPDLIMLDLMLPKVDGFTV 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R S +P++ ++ Q ++ F++G DD + KP E+LARV A+ RR Sbjct: 64 CQRLRRDERTSDIPILMMTALGQTQDKVEGFNAGADDYLTKPFEVEEMLARVRALLRRTD 123 Query: 121 VSNNRAETGPIRVF------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 A+ I F + + V L E +L L+ G+ V+ + I Sbjct: 124 RIPQAAKHSEILSFGPLTLVPERFEAVWFEGVVKLTHLEFELLHCLLQRHGQTVSPSDIL 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 ++G +D + + HI LR KL + + GY ++ Sbjct: 184 KEVWG-YDPDDDIETIRVHIRHLRTKLEPDPRHPRYIKTVYGAGYCLE 230 >gi|52140690|ref|YP_086139.1| DNA-binding response regulator [Bacillus cereus E33L] gi|51974159|gb|AAU15709.1| DNA-binding response regulator [Bacillus cereus E33L] Length = 229 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 52/229 (22%), Positives = 89/229 (38%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++++ F + + + + D+ ++ L Sbjct: 5 ILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIML--PELDGW 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR-------EILARVAA 114 + R IR S+VP+I ++ TL F+ G DD V KP +L Sbjct: 63 SVCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKV 122 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 R L+ ++ I V R V L E IL Y M N+G + + Q+ Sbjct: 123 TKRLLENEDDTLSIHGIHVHFPSRTVTVDRTDINLTHTEFEILAYFMRNQGIVLTREQLI 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 S I+G ++ A ++ V SHI LR KL K + + GY + N Sbjct: 183 SRIWG-YEFAGDDRTVNSHIRNLRNKLGEK--AKYITTVVRTGYKFEGN 228 >gi|313678937|ref|YP_004056676.1| two component transcriptional regulator, winged helix family [Oceanithermus profundus DSM 14977] gi|313151652|gb|ADR35503.1| two component transcriptional regulator, winged helix family [Oceanithermus profundus DSM 14977] Length = 230 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 42/225 (18%), Positives = 81/225 (36%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + A G ++ + E D+ ++ L G Sbjct: 4 ILIVEDDREIAALAAAQLERAGHAVRVVHDGEAGLAEALEGGHDLLVLDVML--PGVSGF 61 Query: 62 ELPRIIRAHSQVPLI-GISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIY 116 E+ +R P + ++ + + G DD + KP RE+ ARV Sbjct: 62 EIVERLRRRPGYPRVLMLTARAEEVDRVLGLELGADDYLTKPFSLRELEARVRALLRRGV 121 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 G + + R V G L RE +L L + G+ + ++ Sbjct: 122 GPEPKPAGPLVFGALEIDPAARRVRVDGRTVNLTAREFDLLYELARHPGRVYTRAELLER 181 Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++G + E+ V SHI++LR K+ + V++ +GY Sbjct: 182 VWGAG-FSGYEHTVNSHINRLRAKIEPDAKRPVYVETVWGVGYRF 225 >gi|325679575|ref|ZP_08159151.1| response regulator receiver domain protein [Ruminococcus albus 8] gi|324108732|gb|EGC02972.1| response regulator receiver domain protein [Ruminococcus albus 8] Length = 240 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 50/231 (21%), Positives = 82/231 (35%), Gaps = 12/231 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + L +G S+ + + I+ L Sbjct: 8 ILVVDDDRDIVAAIAKLLELEGYSVVKAYDGIDALEKLAENDIQLILIDVM--MPRMDGL 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 IR +P+I +S + G DD + KP + E+ ARV + RR Sbjct: 66 SAIMKIRDKRNIPIIVLSAKSEDTDKILGLSMGADDYITKPYNPMELTARVRSSLRRYMQ 125 Query: 122 SNNRAETGPIRV--------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + V + V GE L E +ILE LM N G+ + I Sbjct: 126 LGDIGSINKTDVIKIGGLELDKSAKQLTVDGEPVRLTATELKILELLMENAGRVFSAEDI 185 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223 + ++ AVE N V HI +R+K+ + + +GY I+ N Sbjct: 186 YRRVWNEDAYAVE-NTVMVHIRHIREKIEIDPKEPRYLKVVWGIGYKIEKN 235 >gi|167769243|ref|ZP_02441296.1| hypothetical protein ANACOL_00566 [Anaerotruncus colihominis DSM 17241] gi|167668883|gb|EDS13013.1| hypothetical protein ANACOL_00566 [Anaerotruncus colihominis DSM 17241] Length = 224 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 46/222 (20%), Positives = 93/222 (41%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ +D ++ + +G + + DV + ++ + Sbjct: 5 ILVAEDEEKIRRLVSSYLVREGFKVVEAADGQQAVEKFEDNE-DVVLVMLDVMMPKKDGY 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R IR S VP++ ++ S Q + F +G D+ + KP ++ RV + RR Sbjct: 64 DACREIRGKSNVPILMLTARDSEQDEVAGFGAGADEYIAKPFSPTILVTRVKNLLRRTSS 123 Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 ++ + G ++V R V G+ +E +L YL+ N + + QI ++ + Sbjct: 124 NDMSDVSAGGVKVLYRERTVTVDGKKIITTPKEFDLLYYLIRNTNIVLTRDQIICTVWDM 183 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 D A ++ V++HI LR KL + + R +GY +W Sbjct: 184 -DYAGDDRTVDTHIKCLRAKLGPY--AKCIVTVRKVGYKFEW 222 >gi|313114104|ref|ZP_07799656.1| response regulator receiver domain protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310623513|gb|EFQ06916.1| response regulator receiver domain protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 229 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 53/225 (23%), Positives = 94/225 (41%), Gaps = 10/225 (4%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 M +++D A +++ G + F S E +A ++ ++ L GE Sbjct: 1 MIYIVEDDAAIRELEQYALQSSGYEVTSFESSESFWQAMHAAEPELVILDVML--PGEDG 58 Query: 61 LELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--I 115 + + +R ++P+I ++ S T+ D G DD ++KP E L+RV A Sbjct: 59 FSILKKLRNTPSLRRLPIIMVTAKSSELDTVRGLDCGADDYISKPFGIMEFLSRVRAALR 118 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + N I + + + V G L +E +L L+ N V + I Sbjct: 119 RSAPEARPNVLSFHEILLDNARHNVTVSGTPVELTYKEYSLLRLLLENTNLVVTRETILQ 178 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G D +VE V+ HI LRKKL + + + R +GY + Sbjct: 179 VVWGT-DISVESRTVDMHIRTLRKKLGDAG--KYICTVRKVGYKL 220 >gi|70733391|ref|YP_263166.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas fluorescens Pf-5] gi|330806802|ref|YP_004351264.1| phosphate regulon response regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|68347690|gb|AAY95296.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas fluorescens Pf-5] gi|327374910|gb|AEA66260.1| Phosphate regulon response regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 229 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 45/224 (20%), Positives = 92/224 (41%), Gaps = 9/224 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A +++ G + + + + D+ ++ L G + Sbjct: 6 ILIVDDEAPIREMIAVALEMAGYDCMEAENSQQAHAIIVDRKPDLILLDWML--PGTSGI 63 Query: 62 ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IY 116 EL R ++ +P+I ++ + + G DD + KP RE++AR+ A Sbjct: 64 ELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 E G + + + G+ + E R+L++ M ++ + + Q+ Sbjct: 124 AGPTDGEAPIEVGGLLLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAYTRGQLLDQ 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + VEE V+ HI +LRK L + + V + R GY Sbjct: 184 VWG-GNVYVEERTVDVHIRRLRKALGDAYE-NLVQTVRGTGYRF 225 >gi|33863265|ref|NP_894825.1| two-component response regulator, phosphate [Prochlorococcus marinus str. MIT 9313] gi|33640714|emb|CAE21169.1| two-component response regulator, phosphate [Prochlorococcus marinus str. MIT 9313] Length = 245 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 35/229 (15%), Positives = 80/229 (34%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS---AREDVSAIEAFLIGKGE 58 ++++D +++ +G + +S + D+ ++ L G Sbjct: 19 LLVVEDDDAIRETIGEALCAEGFETILCGDGFEAVSILTSQPRHKFDLIILDVML--PGI 76 Query: 59 KVLELPRIIRAHSQVPLIGISDYPSLQTTLD------FFDSGVDDVVNKPIHHREILARV 112 L++ R +R I + + D V + + R Sbjct: 77 GGLDICRRLREFDPKTRIFMISARDNEIDRVLGLEVGADDYLVKPFSVRELVARCRAQLR 136 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 R + E G + ++ + G+ L +E +IL+ L+ + + +++ Q Sbjct: 137 RYQERSDDSNAKMIEYGNLCLYIEECRVTKDGKDLSLAPKEYKILKLLLEHPRQVLSRDQ 196 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 I I+G D + V+ HI +R+K+ + + + R GY Sbjct: 197 ILERIWG-DDYFGDTKTVDVHIRWIREKIEQDPSSPQCIHTVRGFGYRF 244 >gi|21220620|ref|NP_626399.1| two component system response regulator [Streptomyces coelicolor A3(2)] gi|256788240|ref|ZP_05526671.1| two component system response regulator [Streptomyces lividans TK24] gi|289772132|ref|ZP_06531510.1| two component system response regulator [Streptomyces lividans TK24] gi|4539212|emb|CAB39870.1| putative two component system response regulator [Streptomyces coelicolor A3(2)] gi|289702331|gb|EFD69760.1| two component system response regulator [Streptomyces lividans TK24] Length = 221 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 47/222 (21%), Positives = 91/222 (40%), Gaps = 10/222 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G + + + D+ ++ L G Sbjct: 4 ILIVEDEERIASFVQKGLRANGFTTTAVADGDAAYEYALTGGFDLVVLDIGL--PGRDGF 61 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R +R P+I ++ S++ T+ + G DD + KP E+LARV R Sbjct: 62 TVLRELREARVTTPVIVLTARDSVRDTVAGLEGGADDWMTKPFRFEELLARVRLRLRTAA 121 Query: 121 VSNNRAETGPIR--VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + R +G L RE +LE + + G+ +++ QI S ++ Sbjct: 122 RAPEVTVLRSGPLSLDLRTRRARSEGRTVDLTAREFVLLELFLRHPGQVLSREQILSHVW 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G +D N+V+ ++ LRKKL G V++ R +GY + Sbjct: 182 G-YDFDPGSNIVDVYVRALRKKL----GARQVETVRGMGYRL 218 >gi|327440492|dbj|BAK16857.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Solibacillus silvestris StLB046] Length = 226 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 39/222 (17%), Positives = 91/222 (40%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + G + + + D++ ++ Sbjct: 4 ILIVDDDINILQLVNIHLSEAGFKVFQAKDGTEALGILNREVCDLAVVDVM--MPFMDGY 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R+IR +P+I ++ ++ + SG DD + KP +E+ R+ A+ RR Sbjct: 62 ALTRVIRKKYDIPVILLTAKNQIEDKEIGYKSGTDDYLVKPFEPKELNFRIEALLRRYDK 121 Query: 122 SNNRAETG--PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++ + + + ++ LP +E +L +L N + ++ + I+G Sbjct: 122 QSDESIIRLGSTTINKKSYEVQIGDRTILLPLKEFELLYFLALNPMQVFSRDHLIEHIWG 181 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + D +E V+ H+ +LR++ + + R +GYS++ Sbjct: 182 V-DYEGDERTVDVHVKRLRERFSKLTDDFHIKTVRGVGYSLE 222 >gi|256420270|ref|YP_003120923.1| two component transcriptional regulator, winged helix family [Chitinophaga pinensis DSM 2588] gi|256035178|gb|ACU58722.1| two component transcriptional regulator, winged helix family [Chitinophaga pinensis DSM 2588] Length = 227 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 38/222 (17%), Positives = 93/222 (41%), Gaps = 7/222 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKV 60 +++DD + + G R D+ ++ + K G Sbjct: 10 ILVVDDEIDILEIISYNLKSAGYDTITAKDGSEAVQKAKVFRPDLIMLDIMMPNKNGIDT 69 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119 R + ++ ++ ++ +D + G DD + KPI + +++R+ A R Sbjct: 70 CREIRKLPEFKDTMVLFLTALNDEKSEIDGLNMGADDYIAKPIKPKLLVSRINALFRRLH 129 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 K + + + G + + + +G+ L ++E +L+ L + G+ + +I + ++G Sbjct: 130 KPEDTQVQLGDLIIDREKFTVTYKGQEIILAKKEFELLQLLASKPGRVFLRNEILNQVWG 189 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + V + ++ HI K+R+K+ G D + + + +GY + Sbjct: 190 T-EVIVGDRTIDVHIRKIRQKI----GIDLITTVKGVGYKFE 226 >gi|227894305|ref|ZP_04012110.1| DNA-binding response regulator [Lactobacillus ultunensis DSM 16047] gi|227863882|gb|EEJ71303.1| DNA-binding response regulator [Lactobacillus ultunensis DSM 16047] Length = 238 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 45/229 (19%), Positives = 91/229 (39%), Gaps = 15/229 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G ++ E D+ ++ L + L Sbjct: 5 ILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVDEYDPDLMILDLML--PKKDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R +P+I ++ + + + G DD V KP +RE++ARV A RR + Sbjct: 63 EVAREVRQTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRDI 122 Query: 122 SNNRAETGPIRVFSD-----------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + E G+ L RE +L YL + G+ + + Sbjct: 123 VKKAEAATQEETDKNIKIGNLVIMPDAYIVEKNGKKIELTHREFELLYYLAQHMGQVMTR 182 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGY 218 + ++G +D + V+ + +LR+K+ + + ++R +GY Sbjct: 183 EHLLQTVWG-YDYFGDVRTVDVTVHRLREKIEDNPIQPQILVTRRGVGY 230 >gi|160939367|ref|ZP_02086717.1| hypothetical protein CLOBOL_04260 [Clostridium bolteae ATCC BAA-613] gi|158437577|gb|EDP15339.1| hypothetical protein CLOBOL_04260 [Clostridium bolteae ATCC BAA-613] gi|291540515|emb|CBL13626.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Roseburia intestinalis XB6B4] Length = 230 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 40/228 (17%), Positives = 88/228 (38%), Gaps = 10/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD + + + + N+ + + ++ G Sbjct: 4 ILIIDDDRELCALIKRSVQSEHIEADFCNTGKEGLQKLKEQEYQLVVLDVM--MPGMDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL------ARVAAI 115 E IR + +P++ + + + +G DD + KP E++ R Sbjct: 62 ETLEEIRKENSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRRYTR 121 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + + + +++ + R + F LP +E +L Y ++GK + K QI+ Sbjct: 122 FNHQAGAVQKLDFDGLQIDLENRSVTTENGTFELPPKEFDLLLYCAKHQGKILTKQQIYE 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 ++G + N + + IS+LRKKL N + + + +GY + Sbjct: 182 EVWGEEYFYDDSN-IMAIISRLRKKLEVNPSSPKYIQTVKGIGYRFNK 228 >gi|119511528|ref|ZP_01630637.1| Two component Transcriptional regulator, Winged helix family protein [Nodularia spumigena CCY9414] gi|119463839|gb|EAW44767.1| Two component Transcriptional regulator, Winged helix family protein [Nodularia spumigena CCY9414] Length = 250 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 47/228 (20%), Positives = 92/228 (40%), Gaps = 9/228 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++IDD A + + G + + L + D+ ++ L G V Sbjct: 4 ILVIDDDAAISELVAVNLEMAGYDVSQAEDGIKGQALALQLQPDLIMLDLMLPRVDGFTV 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R +++P++ ++ Q ++ F++G DD + KP E+LARV A+ RR Sbjct: 64 CQRLRRDDRTAEIPVLMLTALSQTQNKVEGFNAGADDYLTKPFEVEEMLARVRALLRRTD 123 Query: 121 VSNNRAETGPIRVF------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 A+ I + + + E L E +L L+ G+ V+ ++I Sbjct: 124 RIPQAAKHSEILNYGNLTLVPERFEAIWFNETVKLTHLEFELLHCLLQRHGQTVSPSEIL 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 ++G +D + + HI LR KL + + + GY ++ Sbjct: 184 REVWG-YDPDDDIETIRVHIRHLRTKLEPDPRHPRYIKTVYGAGYCLE 230 >gi|55820412|ref|YP_138854.1| response regulator [Streptococcus thermophilus LMG 18311] gi|55822294|ref|YP_140735.1| response regulator [Streptococcus thermophilus CNRZ1066] gi|55736397|gb|AAV60039.1| response regulator (homolog to csrR/covR Spy) [Streptococcus thermophilus LMG 18311] gi|55738279|gb|AAV61920.1| response regulator (homolog to csrR/covR Spy) [Streptococcus thermophilus CNRZ1066] Length = 229 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 39/225 (17%), Positives = 86/225 (38%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G + ++ + D+ ++ L Sbjct: 5 ILIVEDERNLARFVSLELQHEGYDVVTADNGREGLEMALEKDFDLILLDLML--PEMDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI------HHREILARVAAI 115 E+ R ++ ++ ++ S+ + D G DD + KP R I Sbjct: 63 EVTRRLQQEKDTYIMMMTARDSIMDIVAGLDRGADDYIIKPFAIEELLARIRATFRRQDI 122 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 K + +++ R EV PL +RE +L L++N + + + ++ Sbjct: 123 EATKKAPAKASTYRDLKLDVQNRAVVRGDEVIPLTKREFDLLNTLLSNMNQVMTREELLL 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +D+ +E NVV+ +I LR K+ + + R +GY I Sbjct: 183 QVW-KYDDVIETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 226 >gi|298206949|ref|YP_003715128.1| transcriptional regulatory protein [Croceibacter atlanticus HTCC2559] gi|83849583|gb|EAP87451.1| transcriptional regulatory protein [Croceibacter atlanticus HTCC2559] Length = 226 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 44/224 (19%), Positives = 87/224 (38%), Gaps = 12/224 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L+DD + + +G ++ + + L + + ++ + Sbjct: 8 ILLVDDEPDILEIVGYNLSSEGYNVITASDGKEAVKLAKKRKPQLIILDVM--MPEMDGV 65 Query: 62 ELPRIIRAHS--QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 E IR + + + L FD+G DD + KPI + ++++V A+ RR+ Sbjct: 66 EACEQIRKIPDLDTIITFFTARGEDYSMLAGFDAGADDYITKPIKPKVLVSKVNALLRRI 125 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFP---LPRRERRILEYLMANRGKRVAKTQIFSA 176 + I R+ + LPR+E +L L + GK + I Sbjct: 126 VEDSTNDNVVKIGDLIINREEYKILKGKEEILLPRKEFELLSLLASKPGKVFKREDILDR 185 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + V ++ HI KLR+KL +K + + +GY Sbjct: 186 VWGN-EVVVGGRTIDVHIRKLREKLGDK----RFKTVKGVGYKF 224 >gi|164520412|gb|ABY60261.1| PhoP [Listeria monocytogenes] Length = 233 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 47/232 (20%), Positives = 95/232 (40%), Gaps = 16/232 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD A + G + L S + D+ ++ L +E Sbjct: 2 LVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLML--PEMDGIE 59 Query: 63 LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + +R VP++ ++ + + G DD + KP RE++AR+ AI RR + Sbjct: 60 VTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTEG 119 Query: 122 SNNRAETGPIR-----------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 E + D + +Q ++ L +E +L +L +RGK ++ Sbjct: 120 KAEIIEEITEDSEARILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFSR 179 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 Q+ ++ +D E +V+ H+S LR K+ + + + R GY ++ Sbjct: 180 DQLLDTVW-NYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKME 230 >gi|56965403|ref|YP_177135.1| two-component response regulator [Bacillus clausii KSM-K16] gi|56911647|dbj|BAD66174.1| two-component response regulator [Bacillus clausii KSM-K16] Length = 238 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 42/226 (18%), Positives = 78/226 (34%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +++DD + + ++ + + L ++ ++ L Sbjct: 6 ILIVDDEIGIVKLLEITLEKENFIHIDKATTGKEALQLTKEKTFNLILLDIML--PDISG 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAI 115 EL IR ++ P+I +S + L G DD + KP + R Sbjct: 64 FELCTEIRRNTDTPIIFVSSRATDFDKLTGLGIGGDDYITKPFNPLEVIARIKAILRRQK 123 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + G + + VQ + +E +L + N + Q++ Sbjct: 124 MYERSEKKPVYDYGYFAFYPESAILMVQNQTVECTAKELELLHFFCENPNRIFTTAQLYE 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 ++G D EE V HISKLRKKL + + + R +GY Sbjct: 184 RVWGN-DVFGEEKTVTIHISKLRKKLGDDTRKPKIIVNLRGIGYKF 228 >gi|291086887|ref|ZP_06344776.2| aspartate carbamoyltransferase [Clostridium sp. M62/1] gi|291077294|gb|EFE14658.1| aspartate carbamoyltransferase [Clostridium sp. M62/1] Length = 257 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 41/225 (18%), Positives = 86/225 (38%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD V+ + + G + + S + ++ + G Sbjct: 30 ILIADDDPAVRRLLMRVVEGSGFKAQTASDGLEAVRAAQSGEFALILLDIMMNGND-DGF 88 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIY 116 + +R P++ +S TL D G DD V+KP + +I A V Sbjct: 89 HAIKKLRESGNTTPIMVLSGRSGDFDTLYGLDIGADDYVSKPFNPVILGAKIKALVRRSQ 148 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + GP + + G L RE ++ +++ G+ +K Q++ Sbjct: 149 AGREEAGEILTAGPFLYNTLTMEFSKNGIPISLSSREHVLMRLFLSHPGQVFSKEQLYEL 208 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++ + AV++NV+ +IS LR K+ + + + +GY+ Sbjct: 209 VWN--NTAVDDNVIMVYISHLRNKIEDSPKNPRFIKTVWGIGYTF 251 >gi|255308636|ref|ZP_05352807.1| two-component response regulator [Clostridium difficile ATCC 43255] Length = 230 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 38/229 (16%), Positives = 84/229 (36%), Gaps = 11/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++D + G ++ + + + ++ + Sbjct: 5 ILVVDDEKEIRDLIEIYLLNSGYNVIKAEDGKEALDILKKENIHLMILDIM--MPKMDGI 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-------REILARVAA 114 E+ R +R +P++ +S + +G DD + KP + + ++ R Sbjct: 63 EVCRKVRESLNIPILMLSAKSEDMDKIQGIMTGADDYLTKPFNPLELTVRVKSLIRRAYY 122 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + G + + + V G L RE IL L N+G+ + +IF Sbjct: 123 FSGANNEDKDVIKVGVVIIDKEKHSVTVAGNEIILTSREFDILYLLANNKGRVYSTEEIF 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 ++ N V H+S++R K+ G + + +GY I+ Sbjct: 183 EKVWKEK-YYQSNNTVMVHMSRIRDKIEKYTDGEKIIHTVWGVGYKIEK 230 >gi|86739863|ref|YP_480263.1| two component transcriptional regulator [Frankia sp. CcI3] gi|86566725|gb|ABD10534.1| two component transcriptional regulator, winged helix family [Frankia sp. CcI3] Length = 235 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 46/229 (20%), Positives = 88/229 (38%), Gaps = 16/229 (6%) Query: 5 IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64 +DD A V++ +G + + R D+ ++ LE Sbjct: 2 VDDDAAVRESLERSLRFEGYEVATAVDGADALDVIGRERPDIVVLDVM--MPRVDGLETC 59 Query: 65 RIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123 R +RA P++ ++ L + D G DD + KP E+ AR+ A+ RR ++ Sbjct: 60 RRLRAQGDDVPVLMLTARDGLADRVSGLDVGADDYLVKPFALEELFARLRALIRRAALAA 119 Query: 124 NRA------------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 G + + R L + E +LE +A+ + ++++ Sbjct: 120 RVRAAGSRGIPDSTLRYGGVCLDQVSRQVTRGDRELILTKTEFELLELFLAHPRQVLSRS 179 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I ++G +D N +E +S LR+KL + + R +GY + Sbjct: 180 MIMERVWG-YDFGPTSNSLEVFVSYLRRKLEANGEPRLLHTVRGVGYVL 227 >gi|332969546|gb|EGK08565.1| subtilin biosynthesis regulatory protein SpaR [Desmospora sp. 8437] Length = 226 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 44/227 (19%), Positives = 94/227 (41%), Gaps = 10/227 (4%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + +++DD + D+G + E L + + D+ ++ G Sbjct: 4 IILVVDDERAMVSMIRDALEDEGYQVLTAYDGESVWDLL-NRKPDLILLDIM--MPGLDG 60 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +++ R IR P++ +S ++ ++ G DD + KP E++ARVAA RR Sbjct: 61 IQVCRWIRDSVSCPILFLSARREVEDRIEGLAVGGDDYITKPFSLEELVARVAAHLRREL 120 Query: 121 VSNNRAETGPIR----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 S ++ +T + + + P+ +E ++ +L + G+ ++ QI+ Sbjct: 121 RSPDQEKTVLRFGRLLIDLKACEVRYGDRLIPMTAKEFEVIRFLAMHAGQVFSREQIYEG 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDW 222 ++G + + V HI K+R KL + + +GY + Sbjct: 181 VWGFGE--GSDATVTEHIKKIRAKLGAVDPVTPYISTVWGIGYRWEK 225 >gi|320160200|ref|YP_004173424.1| OmpR family two-component response regulator [Anaerolinea thermophila UNI-1] gi|319994053|dbj|BAJ62824.1| OmpR family two-component response regulator [Anaerolinea thermophila UNI-1] Length = 229 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 35/223 (15%), Positives = 75/223 (33%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD++ V+ + G + + ++ D+ ++ Sbjct: 5 ILIVDDQSSVRQLLQEYLTEQGYRVLTTTDGQSALYIARHENPDLILLDIM--MPRMDGY 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118 + R R Q P+I I+ + D G DD + KP RE + + Sbjct: 63 QFLRQFRQERQTPVIIITAREEETDAVLGLDLGADDYIIKPFRMRELAARIRAILRRGEE 122 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 G I + V G+ L E +L LM + G+ + ++ + Sbjct: 123 HPDKQEILRAGEIILDETTHTVTVSGKPVSLTPIEFDLLATLMRSPGRVYTRAELVEILA 182 Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++ + H+ LR K+ + +++ +GY Sbjct: 183 DSGFAGIDT-TLNVHVRNLRLKIEPDPKNPRYIETIFGIGYRF 224 >gi|295108701|emb|CBL22654.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus obeum A2-162] Length = 227 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 46/225 (20%), Positives = 90/225 (40%), Gaps = 8/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D + +G + S + ++ ++ L G Sbjct: 5 ILIVDDDMAINDMLVKYLRKNGYTTYSAYSGTEALLFLEKQKVNLIILDLML--PGLSGE 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117 ++ I+ VP+IG+S ++ + +G DD V KP I + IY Sbjct: 63 QVLAEIKKTKNVPVIGLSAKEDSKSKIFLLKNGADDYVTKPFDIEELLARIETILRRIYE 122 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 SN+ G + + + G + ++ + PL + E IL+ LM + + K I+ + Sbjct: 123 NQYTSNSLLCCGDLNLDTIGMEATLKKQKLPLTKNEFAILKMLMEHPQQVFTKDMIYEQL 182 Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + EN + HIS LRKK+ + + +G+ +D Sbjct: 183 WNEA-LEGSENAINVHISNLRKKIAAIDNSKSYIKTVWGIGFKMD 226 >gi|302876970|ref|YP_003845603.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] gi|307687661|ref|ZP_07630107.1| two component transcriptional regulator, winged helix family protein [Clostridium cellulovorans 743B] gi|302579827|gb|ADL53839.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] Length = 225 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 45/223 (20%), Positives = 95/223 (42%), Gaps = 6/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + G G +G ++ +S+ + + D+ + L Sbjct: 3 ILLVEDDKTIAAGLEYSLGQEGYTVIMCHSVAAGKEAIEEIQLDLCLFDLSL--PDGSGY 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 EL ++ RA S +P+I ++ + D G DD + KP +E+++R+ + Sbjct: 61 ELCKMARAKSDMPIIFLTACDDEVNVVMGLDMGADDYITKPFRIKELISRIKSVLRRCNK 120 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 N E G I + + + L E R+L N G+ ++++Q+ I+ Sbjct: 121 ENNLKNIFEIGDICINTLDAKVYKKNIEISLTALEYRLLLVFANNIGQVLSRSQLLEGIW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 + + V +N + +I ++R+KL + + + R +GY I Sbjct: 181 DVAGDFVNDNTLTVYIKRIREKLEDDPQNPRIIKTVRGMGYRI 223 >gi|254787304|ref|YP_003074733.1| RstA family transcriptional regulator [Teredinibacter turnerae T7901] gi|237683805|gb|ACR11069.1| transcriptional regulatory protein RstA [Teredinibacter turnerae T7901] Length = 238 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 33/222 (14%), Positives = 81/222 (36%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + D+G + N + L S D+ ++ L K Sbjct: 15 ILVVEDDTSLAEWISDYLIDNGYQVTVANRGDTAVELIRSDTPDLVLLDIMLPEK--DGF 72 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDV--VNKPIHHREILARVAAIYRRL 119 ++ R RA P++ ++ + + G +D + + Sbjct: 73 QVCREARAFYSKPILMMTACSEDADEILGLELGANDYVNKPVKPRILLARIKALLRRTEM 132 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + +R G + + + ++Q P E +L L + G+ +++ + S + G Sbjct: 133 DAAGHRLIFGDLVLDKKSKSVKLQNNTIPFSSNEFEVLWLLAESAGQVISRDDLVSKLRG 192 Query: 180 LFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220 + + + V+ + ++RKKL + + + R GY Sbjct: 193 I-EYDGFDRSVDVRVCRIRKKLSDDPSNPAKIKTIRGKGYLF 233 >gi|251798934|ref|YP_003013665.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247546560|gb|ACT03579.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 230 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 43/229 (18%), Positives = 92/229 (40%), Gaps = 15/229 (6%) Query: 1 MF--VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE 58 M +++DD + +G ++E ++ + DV ++ Sbjct: 1 MIKVLVVDDEVSISSAIAYALQREGFTVETAGDGMEALEKVAAFKPDVMVLDVM--MPKM 58 Query: 59 KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 E+ R + A ++ ++ ++ + + + G DD + KP RE++ARV A++RR Sbjct: 59 NGYEVCRKLEAGNKPAIMLLTVKNDIVDKVLGLELGADDYMTKPFDIREVVARVKALHRR 118 Query: 119 LKVSNNRAETGPIRVFS--------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 ++ + ++ R V GE+ L +E +L L + + ++ Sbjct: 119 RQIESPEQDSDKEGRLELGGIVIELLSRTVRVDGEICDLTPKEFDLLALLAKHPDRVYSR 178 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 + ++ D A V+ H+ +LRKKL G + + +GY Sbjct: 179 EALLEQVW-EMDFAGGTRTVDIHVQRLRKKLGEWQG--LIQTVYGIGYK 224 >gi|251797128|ref|YP_003011859.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247544754|gb|ACT01773.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 231 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 43/229 (18%), Positives = 91/229 (39%), Gaps = 14/229 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + D G +G + + D+ ++ L L Sbjct: 6 ILIIEDEEAIADLLAYGLGREGFETRIAGTGSDGLRELELFKPDLLVLDWML--PDRSGL 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + + A +P++ ++ + + + G DD + KP RE++ R+ I RRL Sbjct: 64 DICKQVTAQYNIPILMLTARSDITDKILGLEVGADDYITKPFDLREVVVRIRTILRRLAQ 123 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEV--------FPLPRRERRILEYLMANRGKRVAKTQI 173 + + V + E L +E +L L+ RG+ + ++ Sbjct: 124 AQAPVKEAAPSVIGFRDIVVSRAERLVTKKGEAVDLTPKEFDLLLALLGVRGRIFTRAEL 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +++G +D + V++HI +LRKKL D + + +GY + Sbjct: 184 LESVWG-YDFPGDMRTVDTHIQRLRKKLD---AADLITTVFGIGYKFEK 228 >gi|109897848|ref|YP_661103.1| two component transcriptional regulator [Pseudoalteromonas atlantica T6c] gi|109700129|gb|ABG40049.1| two component transcriptional regulator, winged helix family [Pseudoalteromonas atlantica T6c] Length = 230 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 46/226 (20%), Positives = 90/226 (39%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + +G + + ++ + E + D ++ L G+ L Sbjct: 7 ILIVEDEPKIAQILVDFLTIEGFATQVVHNGDEAEDAIRTKTPDCVILDLML--PGKDGL 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------AI 115 + + +R SQVP+I ++ L G DD V KP RE++ARV Sbjct: 65 SICKDVRKFSQVPIIMLTARVDEIDRLMGLGFGADDYVCKPFSPREVVARVQAILRRATF 124 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 I + ++ + E+ +V L E R+L+ LM+ G ++ + Sbjct: 125 AAPSSDETCILTFKHISLNTERFECEINKQVTELTPVEFRLLKTLMSRPGTVFSRESLMQ 184 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYSI 220 + Y V ++SH+ LR K+ P+ S +GY + Sbjct: 185 SCY-EDARIVSNRTIDSHMKNLRNKVALTNDPQPILQSVYGVGYKL 229 >gi|229080396|ref|ZP_04212919.1| Two-component response regulator [Bacillus cereus Rock4-2] gi|228702905|gb|EEL55368.1| Two-component response regulator [Bacillus cereus Rock4-2] Length = 233 Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats. Identities = 50/227 (22%), Positives = 92/227 (40%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ ++G+ + L D+ ++ + Sbjct: 10 ILIVDDDKEIRNLISVYLENEGLKTQKAEDAIQALQLLEEKEFDLIILDIM--MPNMDGI 67 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E IR +P+I +S + SG DD ++KP + E++ARV + RR K Sbjct: 68 EACMKIREDRNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 127 Query: 122 SNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N E V +D V+G+ L +E ILE L N+G ++ +I+ Sbjct: 128 YNTSIEHNKSILEIGDLTVNTDTCQVWVRGKETRLTPKEFAILELLARNKGVVLSVAKIY 187 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220 A++ +N V HI+K+R K+ + + +GY I Sbjct: 188 EAVWKEV-FYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGYKI 233 >gi|223369872|gb|ACM88804.1| two-component system response regulator [Arthrobacter sp. A3] Length = 258 Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats. Identities = 49/220 (22%), Positives = 92/220 (41%), Gaps = 5/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + +DG + + + D+ ++ L G + Sbjct: 39 ILVVDDDEALAEMIGIVLRNDGFGPVFCGDGAKAFEVSQANKPDLVLLDLML--PGMDGI 96 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R+IRA S VP++ ++ + +SG DD V KP E++ARV A R V Sbjct: 97 EICRLIRAESDVPIVMLTAKSDTSDVVRGLESGADDYVAKPFKPAELVARVRARLRPGDV 156 Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 G I + G GE L E +L L + ++ + ++G Sbjct: 157 KPPETLVIGEITIDVAGHSIRRAGEKISLTPLEFDLLAALARKPWQVFSRELLLEQVWG- 215 Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219 + A + +V +H+ +LR K+ + + V + R +GY Sbjct: 216 YRHAADTRLVNAHVQRLRSKIERDPEAPEVVLTVRGVGYK 255 >gi|196041400|ref|ZP_03108693.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|196027648|gb|EDX66262.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] Length = 229 Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats. Identities = 51/229 (22%), Positives = 88/229 (38%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++++ F + + + + D+ ++ L Sbjct: 5 ILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIML--PELDGW 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR-------EILARVAA 114 + R IR S+VP+I ++ TL F+ G DD V KP +L Sbjct: 63 SVCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKV 122 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + L+ ++ I V R V L E IL Y M N G + + Q+ Sbjct: 123 TKQLLENEDDILSIHGIHVHFPSRTVTVNKTDINLTHTEFEILAYFMKNLGIVLTREQLI 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 S I+G ++ A ++ V SHI LR KL K + + GY + N Sbjct: 183 SRIWG-YEFAGDDRTVNSHIRNLRNKLGEK--AKYITTVVRTGYKFEGN 228 >gi|152975977|ref|YP_001375494.1| two component transcriptional regulator [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152024729|gb|ABS22499.1| two component transcriptional regulator, winged helix family [Bacillus cytotoxicus NVH 391-98] Length = 225 Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats. Identities = 53/225 (23%), Positives = 99/225 (44%), Gaps = 10/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L++D +++ F ++G + + L + D+ ++ L Sbjct: 6 LLVEDERRLREIVSDYFRNEGFEVIEAEDGKQALELFAEHTIDLIMLDIML--PEIDGWS 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR S VP+I ++ TL F+ G D+ V KP + ++AR + +R + Sbjct: 64 VCRRIRKESAVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGA 123 Query: 123 NNRAETGP-----IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 AE I V R V G+ L +E +L YLM N+G +++ + + Sbjct: 124 VGVAEDNVLSAAGIDVNRLSRTVFVDGKEIILTHKEFELLVYLMENKGIVLSRQHLLDQL 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +G +D ++ V++HI KLR KL +K + + +GY + Sbjct: 184 WG-YDYYGDDRTVDTHIKKLRNKLGDK--AKHIGTVIRVGYKFEE 225 >gi|330821858|ref|YP_004350720.1| Heavy metal response regulator [Burkholderia gladioli BSR3] gi|327373853|gb|AEA65208.1| Heavy metal response regulator [Burkholderia gladioli BSR3] Length = 226 Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats. Identities = 44/221 (19%), Positives = 90/221 (40%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + G+S++ L DV ++ L Sbjct: 3 ILVVEDEPKTGAYLKKGLEESGMSVDLATDGADGLLLAEEEPYDVIVLDVML--PVLDGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120 + + +RA P++ ++ ++ + + G DD + KP E+LARV R Sbjct: 61 AVLQRLRASKATPVLFLTARDDVEDRVRGLELGADDYLVKPFAFVELLARVRTLARRGPP 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + G + + R L RE +L L +G+ +++TQI S ++ + Sbjct: 121 RESEWIAIGDLEIDVLRRRVRRGATRIELTPREFALLHLLARRQGEVLSRTQIASYVWDM 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + NVV+ I +LR K+ ++ V + R +GY ++ Sbjct: 181 -NFDSDTNVVDVAIRRLRVKIDDEFPVKLVHTVRGVGYVLE 220 >gi|325003645|ref|ZP_08124757.1| two-component response regulator [Pseudonocardia sp. P1] Length = 232 Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats. Identities = 48/224 (21%), Positives = 94/224 (41%), Gaps = 9/224 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D V++ GD G + W D ++ L G L+ Sbjct: 8 LVVEDDDTVREVIRRYLGDAGYGVLEVADGRAGLWWAVEHAPDAVVLDLML--PGMDGLQ 65 Query: 63 LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R +RA Q+P++ ++ + + G DD V KP RE++ R+ ++ RR Sbjct: 66 VCRELRARRPQLPIVVLTALGEEEDRVRGLQLGADDYVVKPFSPRELVLRIGSVLRRSAP 125 Query: 122 SNNRAETGPI---RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 V G+ + G L RE +L +L+A+ G+ +T++ + ++ Sbjct: 126 EAATVGPVVDGGLVVDRSGQRAHLDGVPLALTGREFDLLAFLVAHPGRAFTRTELLAEVW 185 Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 G E +++ V H+ +LR+KL + + + GY D Sbjct: 186 GW--EYGDQSTVTVHVRRLREKLEIDPNRPRRIATIWGTGYRYD 227 >gi|302559181|ref|ZP_07311523.1| two-component system response regulator TcsR4 [Streptomyces griseoflavus Tu4000] gi|302476799|gb|EFL39892.1| two-component system response regulator TcsR4 [Streptomyces griseoflavus Tu4000] Length = 260 Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats. Identities = 47/219 (21%), Positives = 87/219 (39%), Gaps = 10/219 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + + G ++EG + + DV ++ L +E Sbjct: 44 LVVEDDRGIAESLERGLRQAGYAVEGVRTGRAALAAAT---PDVVLLDLGL--PDIDGVE 98 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-HREILARVAAIYRRLKV 121 + R +RA S +I ++ + D G DD + KP + A + RR Sbjct: 99 VCRRLRARSDAAIIAVTARGEEADRVVALDEGADDYLVKPFGLAELLARIRAVLRRRRPA 158 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 GP+ + R V G V PL +E ILE L A+ G+ V++ QI + Sbjct: 159 EPELVRHGPLTLDPRTRQVSVDGRVVPLTPKEFGILECLAADPGRVVSRQQILERAWDAH 218 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 V++ H++ LR+KL +++ G+ + Sbjct: 219 WYGP-TKVLDVHVAALRRKLGVPG---LIETVYGHGFRL 253 >gi|291280200|ref|YP_003497035.1| two-component system, OmpR family, response regulator [Deferribacter desulfuricans SSM1] gi|290754902|dbj|BAI81279.1| two-component system, OmpR family, response regulator [Deferribacter desulfuricans SSM1] Length = 233 Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats. Identities = 48/227 (21%), Positives = 87/227 (38%), Gaps = 8/227 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++IDD + + + + S L + + D+ ++ L Sbjct: 6 LIIDDDYEILEILKLFLEIENFDVVTTQSGLNALNLIKNNQYDLILLDLGL--PDINGEH 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-----ILARVAAIYR 117 + + IR S+ P+I I+ S+ + F+ G DD + KP E + Sbjct: 64 ICKKIREMSETPIIIITAKESVSNKVLCFEYGCDDYIIKPFEKMELLARIKAILRRSNKI 123 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + NN T P + + + GE L +E IL YL+ N GK + + QI + Sbjct: 124 KSSNDNNIIITPPFEINLEEGYCKKDGEKIDLTAKELEILSYLVKNAGKNLKRDQIIKHV 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223 +G ++ HI +R+K+ N + + +GY D N Sbjct: 184 WGDDSLYKWSRSLDVHIQHIRQKIELNPKKPKFIKTIPGIGYKFDIN 230 >gi|260588299|ref|ZP_05854212.1| DNA-binding response regulator VicR [Blautia hansenii DSM 20583] gi|260541350|gb|EEX21919.1| DNA-binding response regulator VicR [Blautia hansenii DSM 20583] Length = 230 Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats. Identities = 40/228 (17%), Positives = 88/228 (38%), Gaps = 10/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD + + + + N+ + + ++ G Sbjct: 4 ILIIDDDRELCALIKRSVQAENIEADFCNTGKDGLQKLKEQEYQLVVLDVM--MPGMDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL------ARVAAI 115 E IR + +P++ + + + +G DD + KP E++ R Sbjct: 62 ETLEEIRKENSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRRYTR 121 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + + + +++ + R + F LP +E +L Y ++GK + K QI+ Sbjct: 122 FNQQAGAIQKLNFDGLQIDLENRSVTTENGTFELPPKEFDLLLYCAKHQGKILTKQQIYE 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 ++G + N + + IS+LRKKL N + + + +GY + Sbjct: 182 EVWGEEYFYDDSN-IMAIISRLRKKLEVNPSSPKYIQTVKGIGYRFNK 228 >gi|89108797|ref|AP_002577.1| predicted DNA-binding response regulator in two-component system withYedV [Escherichia coli str. K-12 substr. W3110] gi|90111362|ref|NP_416478.2| predicted DNA-binding response regulator in two-component system with YedV [Escherichia coli str. K-12 substr. MG1655] gi|170081609|ref|YP_001730929.1| DNA-binding response regulator in two-component system with YedV [Escherichia coli str. K-12 substr. DH10B] gi|238901170|ref|YP_002926966.1| putative DNA-binding response regulator in two-component system with YedV [Escherichia coli BW2952] gi|13878938|sp|P76340|YEDW_ECOLI RecName: Full=Probable transcriptional regulatory protein yedW gi|85675172|dbj|BAA15796.2| predicted DNA-binding response regulator in two-component system withYedV [Escherichia coli str. K12 substr. W3110] gi|87082012|gb|AAC75035.2| predicted DNA-binding response regulator in two-component system with YedV [Escherichia coli str. K-12 substr. MG1655] gi|169889444|gb|ACB03151.1| predicted DNA-binding response regulator in two-component system with YedV [Escherichia coli str. K-12 substr. DH10B] gi|238862252|gb|ACR64250.1| predicted DNA-binding response regulator in two-component system with YedV [Escherichia coli BW2952] Length = 223 Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats. Identities = 50/219 (22%), Positives = 96/219 (43%), Gaps = 3/219 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D ++ + G ++ + +L + ++ L G Sbjct: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIML--PGMDGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + +R Q P+I ++ S+ + DSG +D + KP E+LARV A R+ Sbjct: 61 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 N+ E +R+ S L R+E ++L L + G+ + +T I S I+G+ Sbjct: 121 LNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 179 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + N V+ I +LR K+ + + + R +GYS Sbjct: 180 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 >gi|324326529|gb|ADY21789.1| DNA-binding response regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 231 Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats. Identities = 43/230 (18%), Positives = 83/230 (36%), Gaps = 12/230 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD + + ++G ++ + + S+ D+ ++ L Sbjct: 5 ILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQMISTYEVDLMILDIM--MPKRNGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARVA 113 E+ + +R ++ VP++ +S + +G DD + KP + E + Sbjct: 63 EVCQEVRENNTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSF 122 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 K + + +V GE L E IL L +N G+ + +I Sbjct: 123 QNATSSKNEDGIIRIRSAEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEI 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222 F ++ D V HIS LR KL + + +GY I+ Sbjct: 183 FERVWNE-DGYGSNKTVMVHISNLRDKLETGMNEEKFIHTVWGVGYKIEK 231 >gi|310822156|ref|YP_003954514.1| DNA-binding response regulator PhoP2 [Stigmatella aurantiaca DW4/3-1] gi|309395228|gb|ADO72687.1| DNA-binding response regulator PhoP2 [Stigmatella aurantiaca DW4/3-1] Length = 241 Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats. Identities = 48/224 (21%), Positives = 98/224 (43%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A ++ G D+G + S + L ++ ++ L GE Sbjct: 14 ILIVEDDANLRLGLQDNLQDEGYEVATAASTAEADALLREREFELLILDVML--PGEDGY 71 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 R +R A + ++ ++ + L F++G D + KP RE+LARV A+ RR+ Sbjct: 72 AFCRRLRGAGLRSMVLMLTARTLEEDILRGFEAGAQDYLTKPYRLRELLARVRALVRRVG 131 Query: 121 VSNNRAETGPIRVFS--DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + G + L R E +L +L+ ++ + + + +I A++ Sbjct: 132 SPPAQLMGFAGFSLDLGRRQLSRTGGALIELTRTEFDLLVFLLRHQDRALPRQEILDAVW 191 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221 G D V+ V++ +S L+KKL + + R +GY ++ Sbjct: 192 GQ-DVVVDPRTVDNFVSNLKKKLGWTSTSGFTIHTIRGVGYRME 234 >gi|310641219|ref|YP_003945977.1| two component transcriptional regulator, winged helix family [Paenibacillus polymyxa SC2] gi|309246169|gb|ADO55736.1| Two component transcriptional regulator, winged helix family [Paenibacillus polymyxa SC2] Length = 243 Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats. Identities = 43/233 (18%), Positives = 88/233 (37%), Gaps = 14/233 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + +G ++ + S D+ ++ L G L Sbjct: 5 LLVIEDEPTLARLLSYNLIQEGFEVDTEDHGSAGFERASRESYDLILLDLML--PGMNGL 62 Query: 62 ELP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILA 110 ++ R+ P+I ++ + SG DD + KP + Sbjct: 63 DILSRLRHQGLTTPIIILTAKNGEAEVVQGLKSGADDYITKPFGVSELLARVTAVLRRTS 122 Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + ++ + G + ++ + + + G+ L +E +L YL G + + Sbjct: 123 GGDEGVLSEQKDGSKIQLGELEIYPEKYEVILGGQSISLRPKEFEVLLYLSRKPGVVLTR 182 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 + +A++G FD + V+ H+S LRKKL +DS R +GY + N Sbjct: 183 DDLMNAVWG-FDYIGGQRTVDVHVSSLRKKLELDPDSVHIDSIRGVGYKLVVN 234 >gi|255280977|ref|ZP_05345532.1| phosphate regulon transcriptional regulatory protein PhoB [Bryantella formatexigens DSM 14469] gi|255268425|gb|EET61630.1| phosphate regulon transcriptional regulatory protein PhoB [Bryantella formatexigens DSM 14469] Length = 224 Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats. Identities = 53/223 (23%), Positives = 94/223 (42%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D +++ F G + + E + + ++ L GE Sbjct: 5 LLVVEDDRRLQEIISDYFESKGWQVRVTDDGEEVLEKIQTNSYQLILLDVML--PGENGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R IR S VP+I I+ + L+ + G DD V KP + A+V A+ R+ Sbjct: 63 TICRKIREISDVPVIFITARVQEEDELNGYAMGADDYVTKPFSLPVLYAKVTALIGRMHG 122 Query: 122 SN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S+ R G I V + E LP +E +L + + N + ++ Q+ +G Sbjct: 123 SSAGRRIRAGDIEVDVRTHEVWSGEERCELPPKEYELLLFFLENPKRIFSREQLLIRFWG 182 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D E VV++HI KLRK L + + R GY ++ Sbjct: 183 -YDFDGNERVVDNHIKKLRKLLGKSGS--MIRTIRKSGYRMEV 222 >gi|158319282|ref|YP_001511789.1| two component transcriptional regulator [Alkaliphilus oremlandii OhILAs] gi|158139481|gb|ABW17793.1| two component transcriptional regulator, winged helix family [Alkaliphilus oremlandii OhILAs] Length = 232 Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats. Identities = 47/229 (20%), Positives = 90/229 (39%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++D ++G + ++ + + ++ + Sbjct: 6 ILVVDDEKEIRDLIEIYLKNEGFQIIKASNGREALEILEEEEVHLIILDIM--MPEMDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + IR +P+I +S + +G DD V KP + E++ARV + RR Sbjct: 64 KACMKIREEKNMPIIMLSAKAEDMDKIFGLTTGADDYVTKPFNPLELIARVKSQIRRYTK 123 Query: 122 SNNR--------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 NN E + + ++ GE L RE ILE L NRG + +I Sbjct: 124 LNNNAAAATGEEIEIDDLVINVSTHQVKINGEEIKLTPREFDILELLARNRGMVFSMERI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 + ++ D N V H+ K+R+K+ + + + +GY I+ Sbjct: 184 YQKVW-KEDFFDSPNTVMVHVRKIREKIEKDPRNPQYIKTVWGVGYKIE 231 >gi|6531667|gb|AAF15533.1|AF196490_3 phosphate regulon response regulator PhoB [Caulobacter crescentus CB15] Length = 230 Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats. Identities = 57/222 (25%), Positives = 100/222 (45%), Gaps = 4/222 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVL 61 ++++D + +G + E + + D+ ++ L G +V Sbjct: 6 LVVEDEDALATLLHYNLDKEGYRVGVAGDGEEALIMANERGPDLVILDWMLPKVSGIEVC 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 R VP+I ++ + D+G DD V KP E+ ARV A+ RR++ Sbjct: 66 RRLRGRAETRNVPIIMLTARGEETDRIRGLDTGADDYVVKPFSMVELTARVRAVLRRIRP 125 Query: 122 --SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +++R G I + + G+ L E R+L+YLM + G+ ++ Q+ A++G Sbjct: 126 GLADDRITVGDIIIDRVAHRVKRSGKEIHLGPTEFRLLDYLMQHPGRVFSREQLLDAVWG 185 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D VE V+ HI +LRK+L DP+ + R GYS+D Sbjct: 186 -SDVYVEARTVDVHIGRLRKELNGTTDADPIRTVRSAGYSLD 226 >gi|229073674|ref|ZP_04206788.1| Two-component response regulator [Bacillus cereus F65185] gi|228709461|gb|EEL61521.1| Two-component response regulator [Bacillus cereus F65185] Length = 228 Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats. Identities = 48/226 (21%), Positives = 87/226 (38%), Gaps = 11/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++++ DDG + + + + ++ L Sbjct: 5 ILIVEDEDILREIVKDYLLDDGYEVLEATDGKEALSIFEEHEVHLIILDIML--PELDGW 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR------EILARVAAI 115 + R IR S VP+I ++ TL F+ G DD V KP + L Sbjct: 63 SVCRRIRKTSNVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLIESRYS 122 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + I + R + E L E IL YLM N+G + + Q+ + Sbjct: 123 SVISVTNEDTLMNSGIYIHFPSRTATLDKEAISLTHTEFEILTYLMQNQGIVITREQLIT 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 I+G ++ A ++ + SHI LR KL K + + + GY + Sbjct: 183 KIWG-YEFAGDDRTINSHIRNLRHKLGKK--ANHIVTVVRAGYKFE 225 >gi|302342499|ref|YP_003807028.1| two component transcriptional regulator, winged helix family [Desulfarculus baarsii DSM 2075] gi|301639112|gb|ADK84434.1| two component transcriptional regulator, winged helix family [Desulfarculus baarsii DSM 2075] Length = 227 Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats. Identities = 38/224 (16%), Positives = 92/224 (41%), Gaps = 11/224 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + D G ++ + L + + ++ L G + Sbjct: 6 ILVVEDEQDIIDLVEFNLRQAGFNVIKATNGLDGLRLAKEKKPALLVLDLML--PGLEGQ 63 Query: 62 ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAI 115 E+ R ++ ++P++ ++ S + F+ G DD + KP RE + + Sbjct: 64 EVCRRLKQGDDTRRIPVLMLTALASETDRIVGFELGADDYLAKPFSPRELVLRVRAILRR 123 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + + + D + + E+ L E ++L +L+AN G+ + Q+ Sbjct: 124 QTGPEEQSAPLRKDALVIHPDRFEVRIDDEMVALTATEFKLLHHLVANAGRVQTRQQLLE 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 ++G ++ V++H+ +LRKK+ +++ R +GY Sbjct: 184 HVWG-YEYDGYARTVDTHVRRLRKKIGPLSDD--IETIRGIGYR 224 >gi|227879006|ref|ZP_03996902.1| DNA-binding response regulator [Lactobacillus crispatus JV-V01] gi|256844225|ref|ZP_05549711.1| two-component system response regulator [Lactobacillus crispatus 125-2-CHN] gi|256849375|ref|ZP_05554808.1| two-component system response regulatory system response regulator [Lactobacillus crispatus MV-1A-US] gi|262047880|ref|ZP_06020828.1| two-component system response regulator [Lactobacillus crispatus MV-3A-US] gi|293380062|ref|ZP_06626158.1| response regulator receiver domain protein [Lactobacillus crispatus 214-1] gi|295691935|ref|YP_003600545.1| response regulator [Lactobacillus crispatus ST1] gi|312977021|ref|ZP_07788770.1| DNA-binding response regulator VicR [Lactobacillus crispatus CTV-05] gi|227861395|gb|EEJ69018.1| DNA-binding response regulator [Lactobacillus crispatus JV-V01] gi|256613303|gb|EEU18506.1| two-component system response regulator [Lactobacillus crispatus 125-2-CHN] gi|256714151|gb|EEU29139.1| two-component system response regulatory system response regulator [Lactobacillus crispatus MV-1A-US] gi|260571824|gb|EEX28397.1| two-component system response regulator [Lactobacillus crispatus MV-3A-US] gi|290923376|gb|EFE00283.1| response regulator receiver domain protein [Lactobacillus crispatus 214-1] gi|295030041|emb|CBL49520.1| Response regulator [Lactobacillus crispatus ST1] gi|310896349|gb|EFQ45414.1| DNA-binding response regulator VicR [Lactobacillus crispatus CTV-05] Length = 238 Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats. Identities = 45/229 (19%), Positives = 91/229 (39%), Gaps = 15/229 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G ++ E D+ ++ L + L Sbjct: 5 ILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVDEYDPDLMILDLML--PKKDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R +P+I ++ + + + G DD V KP +RE++ARV A RR + Sbjct: 63 EVAREVRQTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRDI 122 Query: 122 SNNRAETGPIRVFSD-----------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + E G+ L RE +L YL + G+ + + Sbjct: 123 VKKAEAASQEETDKNIKIGNLVIMPDAYIVEKNGKKIELTHREFELLYYLAQHMGQVMTR 182 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGY 218 + ++G +D + V+ + +LR+K+ + + ++R +GY Sbjct: 183 EHLLQTVWG-YDYFGDVRTVDVTVHRLREKIEDNPIQPQILVTRRGVGY 230 >gi|224367365|ref|YP_002601528.1| two-component DNA-binding response regulator [Desulfobacterium autotrophicum HRM2] gi|223690081|gb|ACN13364.1| two-component DNA-binding response regulator [Desulfobacterium autotrophicum HRM2] Length = 233 Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats. Identities = 49/227 (21%), Positives = 93/227 (40%), Gaps = 13/227 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + +G S E + D+ ++ L G Sbjct: 6 ILIVDDERDIVELVRFNLKREGYHTLVAFSGEEALSMAKREMPDLVVLDLML--PGIDGF 63 Query: 62 ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 E+ R IR ++ ++P++ ++ + + G +D ++KP RE++AR+ I RR Sbjct: 64 EVTRRIRGNAVTVEIPIVMLTAKGEESDIVTGLEIGANDYISKPFSPRELVARIRGILRR 123 Query: 119 LKVSNNRAETGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 A + + V L E ++L +L+ +G + QI Sbjct: 124 RTRVEKPATQATVIAGPLSMDVGRHRVVVDKNALDLTHSEFQVLWFLVTKKGWVFTRGQI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 A++G + AV E V+ I+ LRKKL D +++ R +GY Sbjct: 184 VDAVHGE-NYAVTERSVDVTIAGLRKKLG--PCADFIETVRGVGYRF 227 >gi|158521941|ref|YP_001529811.1| two component transcriptional regulator [Desulfococcus oleovorans Hxd3] gi|158510767|gb|ABW67734.1| two component transcriptional regulator, winged helix family [Desulfococcus oleovorans Hxd3] Length = 233 Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats. Identities = 52/228 (22%), Positives = 85/228 (37%), Gaps = 14/228 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + DG + S E + S R D+ ++ L G L Sbjct: 6 ILIVDDEKDILELLRLSLERDGYQVACAESGEKALEIVLSGRPDLVVLDLML--PGIDGL 63 Query: 62 ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILA------RV 112 E+ R IR P++ +S + + G DD + KP + ++A R Sbjct: 64 EVARAIRNDDRIQGTPILMLSAKGEESDIITGLELGADDYITKPFSPKILIARIRSVLRR 123 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 I + EV G+ L E IL +L + G + Q Sbjct: 124 QQAKAAPPDPGRTIAVSGITIHPRKHTVEVNGKKIDLTPSEFDILSFLASRPGLVFTRWQ 183 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I I G AV + V+ IS LRKKL + + +++ R +GY Sbjct: 184 IVDKIRGEH-YAVTDRSVDVLISGLRKKLEDYG--EYIETVRGVGYRF 228 >gi|313904165|ref|ZP_07837544.1| two component transcriptional regulator, winged helix family [Eubacterium cellulosolvens 6] gi|313470967|gb|EFR66290.1| two component transcriptional regulator, winged helix family [Eubacterium cellulosolvens 6] Length = 231 Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats. Identities = 37/223 (16%), Positives = 86/223 (38%), Gaps = 6/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++ + + E + + +V+ I ++ Sbjct: 6 ILVVDDEARMRKLVRDFLIRNDFDVVEAGDGEEALNVFYEDK-NVALIILDVMMPKMDGW 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV--NKPIHHREILARVAAIYRRL 119 ++ R IR S+VP+I ++ + L F+ GVD+ + Sbjct: 65 QVCREIRKESKVPIIMLTARSEERDELLGFELGVDEYIAKPFSPKILVARVEAILRRTNQ 124 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++ G + + V G+ L +E +L Y + N G +++ +I + ++ Sbjct: 125 ISADETLSIGGVTINKSAHLASVDGKTMDLSYKEFELLTYFLENAGIALSREKILNNVW- 183 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D + +++H+ KLR K+ K + + +GY + Sbjct: 184 NYDYFGDARTIDTHVKKLRSKMGEKGN--YIRTIWGMGYKFEV 224 >gi|300694173|ref|YP_003750146.1| transcriptional regulatory protein, probable baer protein, response regulator for mdtABCd and acrd [Ralstonia solanacearum PSI07] gi|299076210|emb|CBJ35523.1| Transcriptional regulatory protein, probable baeR protein, response regulator for mdtABCD and acrD [Ralstonia solanacearum PSI07] Length = 222 Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats. Identities = 41/222 (18%), Positives = 85/222 (38%), Gaps = 5/222 (2%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 M ++++D + E + ++ ++ L G+ Sbjct: 4 MILIVEDEPKLAALMGDYLRAAHYDTEWVDDGTRAVQRVRETSPELVLLDLML--PGKDG 61 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R +RA S +P++ ++ L + G DD + KP RE+ R Sbjct: 62 LEICREVRAFSDLPIVMVTARVEEIDRLLGLELGADDYICKPFSPREL-VARIKTILRRV 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 +++ + ++G+ L E R+L L G+ +++ + IY Sbjct: 121 QRGGAQPDSLLQIDNTAYSATLRGQRLDLTPVEFRLLSALANAPGRILSRANLLEQIYDD 180 Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 V + V++H+ LR+K+ G + + S +GY +D Sbjct: 181 H-RIVTDRTVDTHVKNLRRKMELVSPGTELIHSVYGVGYRLD 221 >gi|295108122|emb|CBL22075.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus obeum A2-162] Length = 230 Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats. Identities = 40/228 (17%), Positives = 89/228 (39%), Gaps = 10/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD + + + + N+ + + ++ G Sbjct: 4 ILIIDDDRELCALIKRSVQAEHIEADFCNTGKEGLQKLKEQEYQLVVLDVM--MPGMDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL------ARVAAI 115 E IR + +P++ + + + +G DD + KP E++ R Sbjct: 62 ETLEEIRKENSLPILMFTSKNDSVSKVRGLRAGADDYLTKPFDMDELIARIASLIRRYTR 121 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + + + + +++ + R + F LP +E +L Y ++GK + K QI+ Sbjct: 122 FNQQAGTMQKLDFDGLQIDLENRSVTTENGTFELPPKEFDLLLYCAKHQGKILTKQQIYE 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 ++G + N + + IS+LRKKL N + + + +GY + Sbjct: 182 EVWGEEYFYDDSN-IMAIISRLRKKLEVNPSSPKYIQTVKGIGYRFNK 228 >gi|325663166|ref|ZP_08151616.1| hypothetical protein HMPREF0490_02357 [Lachnospiraceae bacterium 4_1_37FAA] gi|325470620|gb|EGC73850.1| hypothetical protein HMPREF0490_02357 [Lachnospiraceae bacterium 4_1_37FAA] Length = 241 Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats. Identities = 40/227 (17%), Positives = 83/227 (36%), Gaps = 15/227 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + + E S ++ ++ L G Sbjct: 7 ILIVDDDENIAELISLYLLKECFDTMMVHDGEEALAAFDSYSPNLVLLDLML--PGIDGY 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112 ++ R IRA S P+I +S + + + G DD + KP +E + Sbjct: 65 QVCREIRAKSDTPIIMLSAKGEVFDKVLGLELGADDYMIKPFDSKELVARVKAVLRRYQA 124 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 I + G+V +P +E +L +L ++ + + Q Sbjct: 125 PRQETAAAEKGKCVSYPGIEINLTNYSVVCDGKVVEMPPKELELLYFLASSPNQVFTREQ 184 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 + I+G ++ + V+ HI +LR+K G ++S+ +GY Sbjct: 185 LLDQIWG-YEYIGDTRTVDVHIKRLREK---NQGPSDMESRHRVGYR 227 >gi|300921717|ref|ZP_07137883.1| response regulator receiver domain protein [Escherichia coli MS 182-1] gi|301329917|ref|ZP_07222638.1| response regulator receiver domain protein [Escherichia coli MS 78-1] gi|300421855|gb|EFK05166.1| response regulator receiver domain protein [Escherichia coli MS 182-1] gi|300844016|gb|EFK71776.1| response regulator receiver domain protein [Escherichia coli MS 78-1] Length = 240 Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats. Identities = 43/224 (19%), Positives = 88/224 (39%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + I + + + D+ ++ L G L Sbjct: 13 IMIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLML--PGIDGL 70 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 L R IR S +P++ ++ L + G DD + KP RE++ARV + Sbjct: 71 TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + P+ + +G++ L E R+L+ L GK ++ + + +Y Sbjct: 131 QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREHLLNHLY 190 Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + V + ++SHI LR+KL + + + +GY + Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWE 233 >gi|259908032|ref|YP_002648388.1| DNA-binding transcriptional regulator BaeR [Erwinia pyrifoliae Ep1/96] gi|224963654|emb|CAX55151.1| Two-component system response regulator [Erwinia pyrifoliae Ep1/96] gi|283477929|emb|CAY73845.1| probable transcriptional regulator ycf27 [Erwinia pyrifoliae DSM 12163] gi|310768055|gb|ADP13005.1| DNA-binding transcriptional regulator BaeR [Erwinia sp. Ejp617] Length = 235 Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats. Identities = 43/223 (19%), Positives = 86/223 (38%), Gaps = 5/223 (2%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + ++++D + I + D+ ++ L G Sbjct: 9 LILIVEDEPKLGQLMIDYLQAAHYRTHHLLRGDEVVDWVKHHTPDLVLLDLML--PGMNG 66 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L + R +R S++P++ ++ L + G DD + KP RE++ARV I RR + Sbjct: 67 LSVCRELRRFSELPVVMVTAKIEEIDRLLGLEIGADDYICKPFSPREMVARVKTILRRCR 126 Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + A + + L E R+L+ L GK ++ + + +Y Sbjct: 127 RETDEALNISPLLIDEKRFQASWDDKPLDLTPAEFRLLKTLAQQPGKVFSREHLLNHLYD 186 Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + V + ++SHI LR+KL + + + +GY + Sbjct: 187 DY-RVVTDRTIDSHIKNLRRKLESLDAEQPFIRAVYGIGYRWE 228 >gi|6318168|emb|CAB60254.1| MrsR2 protein [Bacillus sp. HIL-Y85/54728] Length = 240 Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats. Identities = 41/228 (17%), Positives = 86/228 (37%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +++DD + + I F +G S + + ++ ++ L Sbjct: 8 ILMVDDDEHILNLLITCFEKEGFSNISTAMTGSETLLKIDQELPNIILLDVML--PDTDG 65 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAA 114 L IR+H+ VP++ ++ + L F G DD + KP + EI + Sbjct: 66 FTLCSKIRSHTNVPILFLTAKTTDLDKLQGFSFGGDDYITKPFNPLEIVARVKAQLKRTT 125 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + ++ + V G P +E ++L Y + + ++K QI+ Sbjct: 126 QLSSSYPLKQVYDYEYFKIDPNTGRLVVNGTRIDCPAQEMKLLIYFCEHPNQILSKHQIY 185 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221 ++G + ++ V H+ +LR+KL + + R GY + Sbjct: 186 KDVWG--EFYGGDSTVMVHVRRLREKLEEDPSRPRWIKTVRGQGYIFE 231 >gi|89094628|ref|ZP_01167565.1| two-component system regulatory protein [Oceanospirillum sp. MED92] gi|89081098|gb|EAR60333.1| two-component system regulatory protein [Oceanospirillum sp. MED92] Length = 228 Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats. Identities = 51/220 (23%), Positives = 96/220 (43%), Gaps = 4/220 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + D DG + E F + ++R D++ I+ L Sbjct: 8 ILIVEDEPSIADNVSIALQLDGFTSEHFILAQEGLNALQNSRFDLAIIDVGL--PDFNGF 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL + IR S +P+I ++ + + G DD V KP RE+ RV AI RR+ Sbjct: 66 ELCKRIREFSNIPIIFLTARSDEIDRILGLELGADDYVTKPFSPRELSTRVKAILRRVAP 125 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 S + + + + + + PL R E +L ++ N + ++ Q+ A + Sbjct: 126 SASTERSDTLILDQKRACIFYREQKLPLTRIEYLLLSKMLNNPEQVFSREQLMQAAWDHP 185 Query: 182 DEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + +++ V++HI +R KL + + R LGYS+ Sbjct: 186 EHSLD-RAVDTHIKTIRAKLNEFNPDQQLIKTHRGLGYSL 224 >gi|298252102|ref|ZP_06975905.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297546694|gb|EFH80562.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 224 Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats. Identities = 47/221 (21%), Positives = 88/221 (39%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D + +G S+ S + D+ ++ L G L Sbjct: 5 LLVVDDDPRITDLLRRILAYEGYSVAVATSGDDALKRTLERAPDLIVLDVML--PGLNGL 62 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ + +R A VP++ ++ ++ + F+ G DD V KP E++AR+ A+ RR + Sbjct: 63 EVVQRLRVAGDNVPILLLTARDTVADRVKGFEIGADDYVVKPFAPEELVARIKALLRRNQ 122 Query: 121 VSNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 V + + R L E +L + + + + I ++G Sbjct: 123 VERHEILHYADVQLDTGTRVAHRGPREIELSPTEYELLALFLRRPRQVLTRDVIMDRVWG 182 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 L D NV+E +I LR L + + R +GY Sbjct: 183 L-DFEGSSNVLEVYIGYLRNMLEADGEARLIHTIRGIGYVF 222 >gi|218695574|ref|YP_002403241.1| transcriptional regulatory protein YedW [Escherichia coli 55989] gi|218352306|emb|CAU98068.1| DNA-binding response regulator in two-component system with YedV [Escherichia coli 55989] gi|315617851|gb|EFU98449.1| transcriptional activator protein irlR [Escherichia coli 3431] Length = 223 Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats. Identities = 50/219 (22%), Positives = 97/219 (44%), Gaps = 3/219 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D ++ + G ++ + +L + ++ L G Sbjct: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIML--PGMDGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + +R Q P+I ++ S+ + DSG +D + KP E+LARV A R+ Sbjct: 61 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHT 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 N+ E +R+ S + L R+E ++L L + G+ + +T I S I+G+ Sbjct: 121 LNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 179 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + N V+ I +LR K+ + + + R +GYS Sbjct: 180 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 >gi|319952570|ref|YP_004163837.1| two component transcriptional regulator, winged helix family [Cellulophaga algicola DSM 14237] gi|319421230|gb|ADV48339.1| two component transcriptional regulator, winged helix family [Cellulophaga algicola DSM 14237] Length = 228 Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats. Identities = 38/224 (16%), Positives = 86/224 (38%), Gaps = 10/224 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 +L+DD + + +G + + + + ++ + G + Sbjct: 8 ILLVDDEPDILEILSYNLSAEGYEVFTAKNGAEGVAKAKKKQPHLIILDVMMPEMDGIEA 67 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIY 116 E+ R + + ++ + + FD+G DD + KPI + +++V + Sbjct: 68 CEIIRNTPGLEETIITFLTARSEDYSQVAGFDAGADDYITKPIKPKVFVSKVKALLRRLK 127 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + + G I + + G+ LPR+E +L L + K + I Sbjct: 128 DEEAAAEDIVKVGNIVINREEYKIVNDGQELVLPRKEFELLSLLTSKPNKVFKREVILDK 187 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + V ++ HI KLR+K+ + D + + +GY Sbjct: 188 VWGN-EVVVGGRTIDVHIRKLREKIGD----DHFKTVKGVGYKF 226 >gi|300854564|ref|YP_003779548.1| putative transcriptional regulator [Clostridium ljungdahlii DSM 13528] gi|300434679|gb|ADK14446.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM 13528] Length = 238 Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats. Identities = 46/228 (20%), Positives = 85/228 (37%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +LIDD + + +G + + L + + D+ ++ Sbjct: 10 ILLIDDEVELLKLLETVLKKEGFRRIFKAKNGTEGIKLCKTEKPDIVVLDIM--MPDMDG 67 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ + IR S VP+I +S + G DD V KP +E+ R+ A RR Sbjct: 68 FEVCKNIRNFSFVPVIFLSAKSDDVDKILALGLGADDYVTKPFSPKEVAFRIKAHLRRNI 127 Query: 121 VSNNRAETG-------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 N I + + + + L +E +L Y+ N + + K I Sbjct: 128 YIKNEISMKKEKISFGDIIIDLEKGEVSKSDKNVVLTPKEYHLLCYMAQNANQILTKQMI 187 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++ + +N + HI KLR+KL + + + + LGY + Sbjct: 188 CDEVW-NDNYEGYDNTIMVHIRKLRQKLEDNPSSPKYIVTAKGLGYKL 234 >gi|311112222|ref|YP_003983444.1| two component response regulator [Rothia dentocariosa ATCC 17931] gi|310943716|gb|ADP40010.1| two component response regulator [Rothia dentocariosa ATCC 17931] Length = 234 Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats. Identities = 50/226 (22%), Positives = 96/226 (42%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + G + + + + D+ ++ G Sbjct: 7 LLVVDDEFNILELLATSLRFAGFEVVTAGNGREAIEKAENEQPDLIVLDVM--MPGMDGF 64 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +R A P++ ++ + + + +G DD V KP E++AR+ AI RR + Sbjct: 65 EVTRRLRDAGRTYPVLFLTAKDATEDKVAGLGAGGDDYVTKPFSLDEVIARIRAILRRSR 124 Query: 121 VSNNRAETGPIRVF----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + D + + E L E +L YLM N + ++K QI Sbjct: 125 NAQEEDDAILRVDDLSLNIDTHEVFLGDEEIDLSPTEFNLLHYLMLNANRVLSKAQILDH 184 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYSI 220 ++ +D + ++VES+IS LR+K+ N + +KR +GY I Sbjct: 185 VW-EYDFNGDSSIVESYISYLRRKIDNNREGHEPLIHTKRGVGYMI 229 >gi|228991458|ref|ZP_04151410.1| Sensor histidine kinase [Bacillus pseudomycoides DSM 12442] gi|228768260|gb|EEM16871.1| Sensor histidine kinase [Bacillus pseudomycoides DSM 12442] Length = 231 Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats. Identities = 45/229 (19%), Positives = 87/229 (37%), Gaps = 11/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD + + ++G S+ + + S + D+ ++ L Sbjct: 6 ILIIDDDKEIVELLAVYLRNEGYSIYKAYDGDEALHMLSLYQIDLMILDIM--MPKRNGL 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAA 114 E+ + +R + VP++ +S + +G DD + KP + E++ R + Sbjct: 64 EVCQQVREENTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELIARVKALLRRSSF 123 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + + +V GE L E IL L +N G+ + +IF Sbjct: 124 QQVTSLNDDGIIRIRSVEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIF 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 ++ D V HIS LR+KL G + + +GY I+ Sbjct: 184 ERVWNE-DGYGSNKTVMVHISNLREKLETGTNGEKLIHTVWGVGYKIEK 231 >gi|254518244|ref|ZP_05130300.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA] gi|226911993|gb|EEH97194.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA] Length = 235 Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats. Identities = 43/229 (18%), Positives = 89/229 (38%), Gaps = 11/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ ++G ++ + + D+ ++ + Sbjct: 10 ILVVDDEKDIREIIEIYLINEGYNIVLASDGIEALEKLKKEKIDLIILDIM--MPKLDGI 67 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-------REILARVAA 114 IR ++P+I +S + + G DD + KP + + L RV + Sbjct: 68 RTCIKIREDKKMPIIMLSAKSEDSDKILGLNIGADDYIIKPFNPLELVARVKSQLRRVTS 127 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 ++++ +R+ R+ V+ L RE ILE L NRG+ ++ QI+ Sbjct: 128 FSEAKEINDEEIYIDGLRINKANREVLVEDRNIKLTPREFDILEVLAINRGRVLSTEQIY 187 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 ++ EN V HI +R+K+ N + +GY I+ Sbjct: 188 EKVWNEP-FYNSENTVAVHIRNIREKIEINPKDPKYIKLVWGVGYKIEK 235 >gi|215487165|ref|YP_002329596.1| transcriptional regulatory protein YedW [Escherichia coli O127:H6 str. E2348/69] gi|312967163|ref|ZP_07781381.1| transcriptional activator protein irlR [Escherichia coli 2362-75] gi|215265237|emb|CAS09628.1| predicted DNA-binding response regulator in two-component system with YedV [Escherichia coli O127:H6 str. E2348/69] gi|312288627|gb|EFR16529.1| transcriptional activator protein irlR [Escherichia coli 2362-75] Length = 223 Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats. Identities = 50/219 (22%), Positives = 97/219 (44%), Gaps = 3/219 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D ++ + G ++ + +L + ++ L G Sbjct: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIML--PGMDGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + +R Q P+I ++ S+ + DSG +D + KP E+LARV A R+ Sbjct: 61 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 N+ E +R+ S + L R+E ++L L + G+ + +T I S I+G+ Sbjct: 121 LNSTLEISGLRMDSVSQSVSRDNINITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 179 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + N V+ I +LR K+ + + + R +GYS Sbjct: 180 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 >gi|323703748|ref|ZP_08115387.1| two component transcriptional regulator, winged helix family [Desulfotomaculum nigrificans DSM 574] gi|323531272|gb|EGB21172.1| two component transcriptional regulator, winged helix family [Desulfotomaculum nigrificans DSM 574] Length = 230 Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats. Identities = 49/221 (22%), Positives = 91/221 (41%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L+DD + ++G ++ L + V ++ G Sbjct: 12 ILLVDDEPNILQFLELGLSNEGFEVQTAQDGLTAINLMKQFQPHVVILDVM--MPGMDGF 69 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-AIYRRLK 120 E+ R+++ V +I ++ + + + G DD + KP E+LAR+ I + Sbjct: 70 EVCRMLKKMDNVAVIMLTAKDEVDDRVKGLNLGADDYMIKPFSFEELLARIYARIRNQFP 129 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 GP + ++ V L E +L++L+ N G ++K I ++G Sbjct: 130 NLFGEVVIGPFHIDDRRKEIRFADRVLELSPTEYELLKFLILNHGLVLSKAMILDKVWG- 188 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +D EEN+VE +I LR KL +K + + R GY +D Sbjct: 189 YDFGGEENIVEVYIRSLRDKLNDK-NHQLIRTLRGSGYRVD 228 >gi|300789401|ref|YP_003769692.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299798915|gb|ADJ49290.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 231 Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats. Identities = 44/223 (19%), Positives = 85/223 (38%), Gaps = 8/223 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++ +D + +G ++ R D+ ++ L+ Sbjct: 6 LVAEDDEKQAEVLRLYLESEGHTVVLAPDGRAALDEARRDRPDLLVLDVM--MPNVDGLD 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + RI+R S V ++ ++ + L D G DD + KP RE++ARV + RR Sbjct: 64 VCRILRQESDVAVLMLTARATEDDLLLGLDLGADDYLTKPYSPRELMARVRTLLRRTAGR 123 Query: 123 NNRAETGPI----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 +T R+ + V G E ++LE L+ G+ + Q+ Sbjct: 124 REPPDTALRAGSLRLDPVRHEVSVDGRPVDTTPGEFQLLETLIRQPGRVFTRRQLLELTR 183 Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 G D V +++ H+ LRKK+ + + + +GY + Sbjct: 184 G-DDRFVSTRIIDVHVLNLRKKIEPDPQKPVHLRTVFGVGYKL 225 >gi|292487424|ref|YP_003530296.1| phosphate regulon transcriptional regulatory protein phoB [Erwinia amylovora CFBP1430] gi|292898668|ref|YP_003538037.1| phosphate regulon two-component response regulator [Erwinia amylovora ATCC 49946] gi|291198516|emb|CBJ45624.1| phosphate regulon two-component response regulator [Erwinia amylovora ATCC 49946] gi|291552843|emb|CBA19888.1| Phosphate regulon transcriptional regulatory protein phoB [Erwinia amylovora CFBP1430] gi|312171528|emb|CBX79786.1| Phosphate regulon transcriptional regulatory protein phoB [Erwinia amylovora ATCC BAA-2158] Length = 229 Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats. Identities = 38/222 (17%), Positives = 88/222 (39%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D A +++ + + + L D+ ++ L G G + Sbjct: 5 ILVVEDEAPIREMLCFVLEQNDYQPIEAADYDSALSLLIEPWPDLILLDWMLPGGSGIQF 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ + +P++ ++ + + + G DD + KP +E++AR+ A+ RR+ Sbjct: 65 IKHLKREAMTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRRIA 124 Query: 121 VSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + + E ++L + M + + ++ Q+ + I+ Sbjct: 125 PMAVEEVIEIQGLTLDPSSHRVMSGTQPLDMGPTEYKLLHFFMTHTERVYSREQLLNHIW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G + VE+ V+ HI +LRK L V + R GY Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALELSGHDRMVQTVRGTGYRF 225 >gi|162138420|ref|YP_541172.2| transcriptional regulatory protein YedW [Escherichia coli UTI89] gi|218558823|ref|YP_002391736.1| transcriptional regulatory protein YedW [Escherichia coli S88] gi|218365592|emb|CAR03319.1| DNA-binding response regulator in two-component system with YedV [Escherichia coli S88] gi|309702255|emb|CBJ01572.1| two-component response regulator [Escherichia coli ETEC H10407] gi|323961816|gb|EGB57416.1| heavy metal response regulator [Escherichia coli H489] Length = 223 Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats. Identities = 50/219 (22%), Positives = 97/219 (44%), Gaps = 3/219 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D ++ + G ++ + +L + ++ L G Sbjct: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIML--PGMDGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + +R Q P+I ++ S+ + DSG +D + KP E+LARV A R+ Sbjct: 61 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 N+ E +R+ S + L R+E ++L L + G+ + +T I S I+G+ Sbjct: 121 LNSSLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 179 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + N V+ I +LR K+ + + + R +GYS Sbjct: 180 NFDSDTNTVDVAIRRLRAKVDDPFPEKLISTIRGMGYSF 218 >gi|318060148|ref|ZP_07978871.1| two-component system response regulator [Streptomyces sp. SA3_actG] gi|333026707|ref|ZP_08454771.1| putative two-component system response regulator [Streptomyces sp. Tu6071] gi|332746559|gb|EGJ77000.1| putative two-component system response regulator [Streptomyces sp. Tu6071] Length = 227 Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats. Identities = 52/222 (23%), Positives = 93/222 (41%), Gaps = 9/222 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +LI+D V+ G + S E ++A DV ++ L G LE Sbjct: 5 LLIEDDEPVRRAVTLGLRRQGHEVRAAASGEEGLAAFAAAVPDVVVLDWML--PGMDGLE 62 Query: 63 LPRII--RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118 + R + + VPL+ ++ + ++G DD V KP+ R + AR+ A Sbjct: 63 VCRRLRTPERAHVPLLLVTARGDDIDVVVGLEAGADDYVVKPVRARVLDARIRAVLRRLD 122 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + GP+ + G +G PL E R+L L A+ G+ +++ Q+ A++ Sbjct: 123 TPGTPPPETHGPLTIDRTGLRVAHEGAPVPLAPSELRLLLTLSASPGQVLSRQQLLEAVW 182 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + +V++ + +LR KL D V++ R GY Sbjct: 183 -EHSYHGDIRLVDACVKRLRNKL--AAAADRVETVRGFGYRF 221 >gi|295105976|emb|CBL03519.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Gordonibacter pamelaeae 7-10-1-b] Length = 233 Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats. Identities = 56/227 (24%), Positives = 93/227 (40%), Gaps = 10/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A + +G ++E S E + ++ D+ ++ L G+ Sbjct: 4 ILIVDDDADLSAIVARYLESEGFAVERAASAEEAYDVLATRAFDLVLLDINL--PGDDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 +R S VP++ S S + D+G DD + KP RE+LA V A+ RR + Sbjct: 62 AACAALRRASDVPIVFASARTSETDRIVGLDTGGDDYLPKPYSLRELLAHVNALLRRSRG 121 Query: 122 SNNRAETG------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 P + G PL +E + YLMA G+ V+K ++ + Sbjct: 122 RAGGEGADGALAAGPYVLDEAAGSMLKDGAAIPLSPKEFALARYLMAREGEVVSKDRLLA 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221 ++G F VE V H+S LR K+ + + R GY D Sbjct: 182 EVWGAF-SEVEPQTVSVHMSWLRAKVEDDPAHPAHFKTVRGRGYCFD 227 >gi|56420225|ref|YP_147543.1| two-component response regulator [Geobacillus kaustophilus HTA426] gi|56380067|dbj|BAD75975.1| two-component response regulator [Geobacillus kaustophilus HTA426] Length = 226 Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats. Identities = 46/222 (20%), Positives = 87/222 (39%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L+DD + D +G S D+ ++ Sbjct: 4 LLLVDDEERMLDLLELYLAPNGYRCVKRRSGAEAIDYLRRHHADLVLLDVM--MPELDGW 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E R IR+ S VP++ ++ + G DD V KP E+LAR+ A+ RR Sbjct: 62 ETCRRIRSFSNVPIMMVTARDETADIVQGLKIGADDYVTKPFDEAELLARIEAVLRRTAG 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + + + + L +E IL L+ + + ++ QI ++++G + Sbjct: 122 GRSAIRAAGLVWDEEEHTVRYEDKPIALTPKEFAILGLLLKHPNQVFSRGQIIASLWG-Y 180 Query: 182 DEAVEENVVESHISKLRKKLRNKL--GFDPVDSKRFLGYSID 221 EE V+SH+ +R+KLR + + + +GY + Sbjct: 181 LADTEERTVDSHMKNIREKLRKAGFPADEYLQTVWGVGYKWE 222 >gi|95929117|ref|ZP_01311862.1| two component transcriptional regulator, winged helix family [Desulfuromonas acetoxidans DSM 684] gi|95135018|gb|EAT16672.1| two component transcriptional regulator, winged helix family [Desulfuromonas acetoxidans DSM 684] Length = 231 Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats. Identities = 41/228 (17%), Positives = 81/228 (35%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D + DG + + E D+ ++ L G +V Sbjct: 5 ILIVEDEEDILALVHYNLSRDGFEVTTATTGEDGVEQARKEHPDLMILDLMLPGMDGLEV 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR--------EILARV 112 E + R +P++ ++ + + G D V KP + + Sbjct: 65 CETLKKDRELRDIPIVMLTAKGEESDIVKGLEMGAADYVTKPFSPKVLLARVKAVLRRYE 124 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 ++ E + + + V G L E R+L +L + G + Q Sbjct: 125 QGDETEHVPTDAVIERHGLVIHPGRNEVLVDGRSVDLTYTEFRVLHFLASRPGWVFTRYQ 184 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I +A+ G D +V + V+ I LR+KL N +++ R +GY Sbjct: 185 IVNAVRGE-DYSVTDRAVDVQIVGLRRKLGNFGH--CIETVRGVGYRF 229 >gi|125973056|ref|YP_001036966.1| two component transcriptional regulator [Clostridium thermocellum ATCC 27405] gi|125713281|gb|ABN51773.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum ATCC 27405] Length = 223 Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats. Identities = 42/219 (19%), Positives = 89/219 (40%), Gaps = 3/219 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + D+G ++ + D+ ++ L Sbjct: 4 ILIVEDDKDIVNNLTEYLRDEGFDVDSAGGQNEAINKMDKNKYDLLLVDISLK--DGNGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R ++ +P+I +S + + G DD + KP RE+L+R+ RR Sbjct: 62 AVCSAARENNDIPVIFLSASDDEYNIVTGLEIGADDYIVKPFRPRELLSRIRKALRRNGK 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + E IRV + G L E R+ + N+G ++++++ I+ + Sbjct: 122 AGAVIEHDNIRVDTVRGIVTKNGSEIFLSALEYRLFLVFLNNKGAVLSRSRLLEEIWNIA 181 Query: 182 DEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYS 219 E V +N + +I +LR+K+ + + + R LGY Sbjct: 182 GEYVNDNTLTVYIKRLREKIEDDPQNPTFIKTVRGLGYK 220 >gi|288960530|ref|YP_003450870.1| two-component response regulator [Azospirillum sp. B510] gi|288912838|dbj|BAI74326.1| two-component response regulator [Azospirillum sp. B510] Length = 249 Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats. Identities = 50/227 (22%), Positives = 88/227 (38%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++D G + + + D+ ++ L GE Sbjct: 7 LLIVDDDPEIRDMLHDFLVKSGFRVSTAGDGREMARVLAQWPVDLIILDLML--PGEDGT 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R +RA S P+I ++ S + + G DD + KP RE+LAR+ AI RR Sbjct: 65 SLCRSLRAKSGTPVIMLTAMGSEVDRIVGLEVGADDYLVKPFSARELLARIRAILRRCGG 124 Query: 122 SNNRAETGPIRVFSDGRDPE-------VQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 E + F+ + V L + E +L L+ + V +T++ Sbjct: 125 PEPARERPRVLGFAGWSLDQGRRELRTPDRVVVHLSQGEYALLGTLLERAPQVVERTELL 184 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 G + ++ IS+LR+KL G + + R +GY Sbjct: 185 EKHRGDTSIPFD-RSIDIQISRLRRKLEEGPGGSGLIKTVRGIGYQF 230 >gi|218554547|ref|YP_002387460.1| transcriptional regulatory protein YedW [Escherichia coli IAI1] gi|218361315|emb|CAQ98899.1| DNA-binding response regulator in two-component system with YedV [Escherichia coli IAI1] Length = 223 Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats. Identities = 50/219 (22%), Positives = 97/219 (44%), Gaps = 3/219 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D ++ + G ++ + +L + ++ L G Sbjct: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIML--PGMDGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + +R Q P+I ++ S+ + DSG +D + KP E+LARV A R+ Sbjct: 61 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 N+ E +R+ S + L R+E ++L L + G+ + +T I S I+G+ Sbjct: 121 LNSSLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 179 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + N V+ I +LR K+ + + + R +GYS Sbjct: 180 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 >gi|56964991|ref|YP_176722.1| two-component response regulator [Bacillus clausii KSM-K16] gi|56911234|dbj|BAD65761.1| two-component response regulator [Bacillus clausii KSM-K16] Length = 236 Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats. Identities = 36/230 (15%), Positives = 84/230 (36%), Gaps = 11/230 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++D ++ G + + E + + + D+ ++ L Sbjct: 4 IYIVEDDQQIRRIMADHLERYGYRVTWAENFETIKQEFVAIQPDLVLLDINLPL--YDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH--------HREILARVA 113 R IR S P++ IS + ++G DD + KP H + Sbjct: 62 YWCRQIRTVSNAPVLFISARTDDMNQVMAIENGGDDYITKPFHLEVLLAKVKSALRRSYG 121 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + E + + D + L ++E + + L + V++ ++ Sbjct: 122 EYAHARDIQQTVRELDNLYFYPDRNELVYNDAKLELTKKEFLLFQRLAESPNVIVSRDEL 181 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 ++ D V++N + ++++LRK+L+ + + + R GY +D N Sbjct: 182 LETLWDEVDF-VDDNTLSVNVTRLRKRLQELGITNAIQTIRGQGYRLDVN 230 >gi|76788272|ref|YP_330651.1| DNA-binding response regulator [Streptococcus agalactiae A909] gi|77405138|ref|ZP_00782237.1| DNA-binding response regulator [Streptococcus agalactiae H36B] gi|77410895|ref|ZP_00787252.1| DNA-binding response regulator [Streptococcus agalactiae CJB111] gi|76563329|gb|ABA45913.1| DNA-binding response regulator [Streptococcus agalactiae A909] gi|77163113|gb|EAO74067.1| DNA-binding response regulator [Streptococcus agalactiae CJB111] gi|77176281|gb|EAO79051.1| DNA-binding response regulator [Streptococcus agalactiae H36B] Length = 223 Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats. Identities = 43/220 (19%), Positives = 86/220 (39%), Gaps = 2/220 (0%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D + + L S++ ++ E S A DV ++ + G Sbjct: 3 ILVVEDEFDLNRSIVKLLKKQHYSVDSASNGEEALQFVSVAEYDVIILDVMMPKMDGFTF 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L+L R + + ++ D + F + V R + Sbjct: 63 LKLLRNKGSQVSILMLTARDAVEDRIAGLDFGADDYLVKPFEFGELMARIRAMLRRTNRQ 122 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 VS++ + I + + + L +E +LEYL +R + +++ QI ++ Sbjct: 123 VSSDDIQIQDITINLSTKQVWRNNNLIDLTAKEYEVLEYLARHRDQVLSRHQIREHVWD- 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D E N+++ I LR+KL N + +KR LGY I Sbjct: 182 YDYDGESNIIDVLIKNLRRKLDNNRDGSLIKTKRGLGYVI 221 >gi|326940933|gb|AEA16829.1| two-component response regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 228 Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats. Identities = 51/227 (22%), Positives = 93/227 (40%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ ++G+ + L D+ ++ + Sbjct: 5 ILIVDDDKEIRNLISVYLENEGLKTQKAEDAIQALQLLEEKDFDLIILDIM--MPNMDGI 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E IR +P+I +S + SG DD ++KP + E++ARV + RR K Sbjct: 63 EACMKIREDRNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 122 Query: 122 SNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N E V +D R V+G+ L +E ILE L N+G ++ +I+ Sbjct: 123 YNTSIEHNKSILEIGDLTVNTDTRQVWVRGKETRLTPKEFAILELLARNKGVVLSVAKIY 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220 A++ +N V HI+K+R K+ + + +GY I Sbjct: 183 EAVWKEV-FYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGYKI 228 >gi|317404461|gb|EFV84873.1| two-component system response regulator [Achromobacter xylosoxidans C54] Length = 228 Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats. Identities = 39/221 (17%), Positives = 90/221 (40%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + D + ++ L D+ ++ L G Sbjct: 3 ILVIEDEPKLADYLKKGLSEQSHVVDLARDGVNGLHLALEGAYDLIVLDVML--PGVDGF 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120 + +RA+ P++ ++ +++ + + G DD + KP E+LARV A+ R Sbjct: 61 GILAAVRANKDTPILMLTARDAVEDRVRGLEGGADDYLIKPFAFSELLARVQALLRRGRS 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + R G L +E +L L+ +G+ +++T + ++ + Sbjct: 121 QEPTVFRLADLELDLARRKVARGGRRLDLTAKEFNLLALLLRRQGQVLSRTTLAEQVWDM 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + NV++ + +LR KL + + + R +GY ++ Sbjct: 181 -NFDSDTNVIDVAVRRLRSKLDDPFEAKLLHTVRGMGYVLE 220 >gi|309775270|ref|ZP_07670279.1| DNA-binding response regulator [Erysipelotrichaceae bacterium 3_1_53] gi|308916933|gb|EFP62664.1| DNA-binding response regulator [Erysipelotrichaceae bacterium 3_1_53] Length = 233 Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats. Identities = 51/233 (21%), Positives = 82/233 (35%), Gaps = 15/233 (6%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + ++ +D A + D G + + S D++ I+ Sbjct: 4 VILIAEDEASIADAIEIYLKSQGYQTLKAANGAAAWEIVESTPVDLAIIDVM--MPVMDG 61 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + L IR P+I +S + + G DD V KP E+LARV A RR Sbjct: 62 IALTMKIRETYDFPIIILSAKSEDIDKITGLNIGADDYVTKPFVPMELLARVHAQLRRHM 121 Query: 121 VSNNRAETGPIRVF----------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 E ++ V GE L E RIL+ M + G+ + Sbjct: 122 RYRQLLEQKQEVEDSLLLGGIELHRKSKEVFVDGEPRRLTPIEFRILQLFMEHPGQVFSS 181 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 I+ ++ + AV V HI LR+K+ N + +GY I+ Sbjct: 182 DDIYEHVW--KEAAVNTETVMVHIRNLREKIEINPRTPRYIKVVWGVGYKIEK 232 >gi|255326659|ref|ZP_05367735.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Rothia mucilaginosa ATCC 25296] gi|283457339|ref|YP_003361914.1| response regulator [Rothia mucilaginosa DY-18] gi|255295876|gb|EET75217.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Rothia mucilaginosa ATCC 25296] gi|283133329|dbj|BAI64094.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Rothia mucilaginosa DY-18] Length = 234 Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats. Identities = 49/226 (21%), Positives = 94/226 (41%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + G + + + D+ ++ G Sbjct: 7 LLVVDDEFNILELLATSLRFAGFEVVTAGNGREALEKAHAENPDLIVLDVM--MPGMDGF 64 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +R + P++ ++ + + + +G DD V KP E++AR+ AI RR + Sbjct: 65 EVTRRLRENGTTTPVLFLTAKDATEDKVTGLGAGGDDYVTKPFSLDEVIARIRAILRRSR 124 Query: 121 VSNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + D + + E L E +L YLM N + ++K QI Sbjct: 125 SVQEEDDAVLRVDALTLNVDTHEVFLGDEEIDLSPTEFNLLHYLMLNANRVLSKAQILDH 184 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYSI 220 ++ +D + ++VES+IS LR+K+ N + +KR +GY I Sbjct: 185 VW-EYDFNGDSSIVESYISYLRRKIDNNRENHEPLIHTKRGVGYMI 229 >gi|240146794|ref|ZP_04745395.1| regulatory protein VanR [Roseburia intestinalis L1-82] gi|257201080|gb|EEU99364.1| regulatory protein VanR [Roseburia intestinalis L1-82] Length = 237 Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats. Identities = 44/233 (18%), Positives = 89/233 (38%), Gaps = 16/233 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + D ++ ++ + + S + D++ ++ L + Sbjct: 6 LVVDDESEIADLIEMYLQNENYTVYKSYTAQSALEYIESEKLDLAILDVML--PDIDGFQ 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + IR P+I ++ T+ G DD V KP ++ARV A RR K Sbjct: 64 ICKKIREKYTYPVIMLTAKDGEVDTITGLTLGADDYVTKPFKPLALMARVKAQLRRYKKY 123 Query: 123 NNRAETGPIR-------------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 N+ +E + V G L E +IL+ L +G V Sbjct: 124 NSFSEPMDSEGKETIITTSNGLVMNISAHVCIVDGTSVELTPTEFKILQTLCEKKGLAVM 183 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 ++F +++ N + HI LR+K+ + + + +GY ++ Sbjct: 184 SEELFRSVWPDEFYDKNSNTITVHIRHLREKMGDTTEEPRYIKTIWGVGYKVE 236 >gi|170755428|ref|YP_001779912.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] gi|226947489|ref|YP_002802580.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] gi|169120640|gb|ACA44476.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] gi|226843713|gb|ACO86379.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] gi|322804530|emb|CBZ02081.1| two-component response regulator [Clostridium botulinum H04402 065] Length = 225 Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats. Identities = 43/224 (19%), Positives = 94/224 (41%), Gaps = 6/224 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD + + ++G ++ S QS ++ ++ L Sbjct: 5 ILVIDDEVKIIEVIKLYLENEGYTVIQATSGIEALKKQSEFNPNLLILDLML--PDISGE 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + IR S+VP+I ++ S + L+ + G DD + KP ++++A+V A+ +R+K Sbjct: 63 NVCERIRKESEVPIIMLTAKSSEDSILNGYSIGSDDYITKPFSPKQLVAKVNAVLKRVKG 122 Query: 122 SNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + + + E + L E +IL L N K ++ ++ I Sbjct: 123 NQCENLIFNNELIIDIVNKKVEYNNKEIILTASEYKILSILARNPNKIFSREELMDYI-S 181 Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 + + + ++++HI +R KL + + R +GY + Sbjct: 182 RDNICIYDRIIDTHIKNIRAKLDQDSKNPTYIKTIRGMGYRFNV 225 >gi|154688064|ref|YP_001423225.1| MrsR2 [Bacillus amyloliquefaciens FZB42] gi|154353915|gb|ABS75994.1| MrsR2 [Bacillus amyloliquefaciens FZB42] Length = 240 Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats. Identities = 39/228 (17%), Positives = 85/228 (37%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +++DD + + I F +G S + + ++ ++ L Sbjct: 8 ILMVDDDEHILNLLITCFEKEGFSNISTAMTGSETLLKIDQELPNIILLDVML--PDTDG 65 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH------REILARVAA 114 L IR+H+ VP++ ++ + L F G DD + KP + + + Sbjct: 66 FTLCSKIRSHTNVPILFLTAKTTDLDKLQGFSFGGDDYITKPFNPLEIVARVKAQLKRMT 125 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + ++ + V G P +E ++L Y + + ++K QI+ Sbjct: 126 QLSSSYPLKQVYDYEYFKIDPNTGRLVVNGTRIDCPAQEMKLLIYFCEHPNQILSKHQIY 185 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221 ++G + ++ V H+ +LR+KL + + R GY + Sbjct: 186 KDVWG--EFYGGDSTVMVHVRRLREKLEEDPSRPRWIKTVRGQGYIFE 231 >gi|170757056|ref|YP_001781900.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] gi|169122268|gb|ACA46104.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] Length = 234 Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats. Identities = 39/228 (17%), Positives = 81/228 (35%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + +G +E + ++ + Sbjct: 6 ILIVEDDVNINNMIKESLIKEGYDIEQAFHGLEAVEKFKGENYHMVIMDIM--MPVMDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI--------HHREILARVA 113 E R IR S+VP+I +S + G DD + KP I + Sbjct: 64 ESMRRIREKSKVPIIILSAKGEDSDKIIGLGMGADDYIVKPFSVPELIARVKCNIRRAIY 123 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + N E G ++ + G+ L +E +IL+ N + K QI Sbjct: 124 YNETKSIKENKIYEYGDVKFDMNNYIVTKGGKELTLTAKEMKILKLFFENPNRVFTKVQI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 + +++G + + N V H+ +LR K+ + +++ +GY + Sbjct: 184 YDSVWGE-EFLSDYNTVTVHMRRLRSKIEDDPNNPKLIETVWGIGYKL 230 >gi|228924395|ref|ZP_04087631.1| Two-component response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228835257|gb|EEM80662.1| Two-component response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 228 Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats. Identities = 47/226 (20%), Positives = 88/226 (38%), Gaps = 11/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++++ +DG + + + + ++ L Sbjct: 5 ILIVEDEDILREIVKDYLLNDGYEILEATDGKEALSIFEEHEVHLIILDIML--PELDGW 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR------EILARVAAI 115 + R IR S VP+I ++ TL F+ G DD V KP + L Sbjct: 63 SVCRRIRKTSNVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLIESRYS 122 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + + I + R V E + E IL YLM N+G + + Q+ + Sbjct: 123 SVISVTNEDTLMSSGIHIHFPSRTVTVDKEAKSITHTEFEILTYLMQNQGNVITREQLIT 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 I+G ++ A ++ + SHI LR KL K + + + GY + Sbjct: 183 KIWG-YEFAGDDRTINSHIRNLRHKLGKK--ANHIVTVVRAGYKFE 225 >gi|229175534|ref|ZP_04303044.1| Two-component response regulator [Bacillus cereus MM3] gi|228607930|gb|EEK65242.1| Two-component response regulator [Bacillus cereus MM3] Length = 229 Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats. Identities = 52/229 (22%), Positives = 90/229 (39%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++++ F + + + + D+ ++ L Sbjct: 5 ILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIML--PELDGW 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR-------EILARVAA 114 + R IR S+VP+I ++ TL F+ G DD V KP +L Sbjct: 63 SVCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKV 122 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + L+ ++ I V R V G L E IL Y M N+G + + Q+ Sbjct: 123 TKKPLENEDDTLSIHGIYVHFPSRTVTVDGANITLTHTEFEILVYFMKNQGIVLTREQLI 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 S I+G ++ A ++ V SHI LR KL K + + GY + N Sbjct: 183 SRIWG-YEFAGDDRTVNSHIRNLRNKLGEK--AKCITTVVRTGYKFEGN 228 >gi|291295786|ref|YP_003507184.1| two component transcriptional regulator, winged helix family [Meiothermus ruber DSM 1279] gi|290470745|gb|ADD28164.1| two component transcriptional regulator, winged helix family [Meiothermus ruber DSM 1279] Length = 241 Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats. Identities = 40/222 (18%), Positives = 83/222 (37%), Gaps = 7/222 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L++D + +G ++E ++ D+ ++ L G L+ Sbjct: 6 LLVEDEPALAGALADNLEGEGYAVEVAPDGRAALERWAAWNPDLVVLDVML--PGLNGLQ 63 Query: 63 LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R +RA Q P++ +S + + ++ G DD + KP H E L RV + RR Sbjct: 64 VCRQMRAQGQTTPVLFLSAKGAPEERVEGLRVGGDDYLAKPFHLPEFLLRVKNLLRRRAE 123 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFP--LPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + L RE IL L+ G+ V++ +I ++G Sbjct: 124 TPRAVYEFAGHRIDFRAWTAYLKDGRKEVLGEREMAILRLLIERAGQVVSRDEILDRVWG 183 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 + +++ + +LR+ + + +GY Sbjct: 184 Q-EVFPSSRTIDNFVVRLRRLFEPDPARPVHLHTVWGVGYRF 224 >gi|164520378|gb|ABY60244.1| PhoP [Listeria monocytogenes] gi|164520410|gb|ABY60260.1| PhoP [Listeria monocytogenes] gi|164520432|gb|ABY60271.1| PhoP [Listeria monocytogenes] Length = 233 Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats. Identities = 47/232 (20%), Positives = 95/232 (40%), Gaps = 16/232 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD A + G + L S + D+ ++ L +E Sbjct: 2 LVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLML--PEMDGIE 59 Query: 63 LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + +R VP++ ++ + + G DD + KP RE++AR+ AI RR + Sbjct: 60 VTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTEG 119 Query: 122 SNNRAETGPIR-----------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 E + D + +Q ++ L +E +L +L +RGK ++ Sbjct: 120 KAEIIEELTEDVEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFSR 179 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 Q+ ++ +D E +V+ H+S LR K+ + + + R GY ++ Sbjct: 180 DQLLDTVW-NYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKME 230 >gi|83643658|ref|YP_432093.1| phosphate regulon transcriptional regulatory protein phoB [Hahella chejuensis KCTC 2396] gi|83631701|gb|ABC27668.1| Phosphate regulon transcriptional regulatory protein phoB [Hahella chejuensis KCTC 2396] Length = 230 Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats. Identities = 45/221 (20%), Positives = 88/221 (39%), Gaps = 5/221 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVL 61 +++DD +++ L + D+ ++ L G G + Sbjct: 7 LIVDDEPAIREMIAVALEMADYDYLEAGDAREAHALIIDQKPDLILLDWMLPGVSGIEFA 66 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + S++PLI ++ + + G DD + KP RE++AR+ A+ RR V Sbjct: 67 RRLKRDQNTSEIPLIMLTAKTEEDNKVQGLEVGADDYITKPFSPRELVARLKAVLRRTAV 126 Query: 122 SNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 R+ +G+ + E ++L++ M ++ + + Q+ ++G Sbjct: 127 QGMETPIEVEGLRLDPVCHRVTAKGDALNMGPTEYKLLQFFMTHQERVYTRGQLLDQVWG 186 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + VEE V+ HI +LRK L V + R GY Sbjct: 187 -GNVYVEERTVDVHIRRLRKALE-PSHHHLVQTVRGTGYRF 225 >gi|304440255|ref|ZP_07400145.1| response regulator [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371304|gb|EFM24920.1| response regulator [Peptoniphilus duerdenii ATCC BAA-1640] Length = 231 Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats. Identities = 35/227 (15%), Positives = 89/227 (39%), Gaps = 10/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D ++ +G + + E + S + ++ L G Sbjct: 5 ILLVEDEDAIRKFIKINLEREGYDVYEAGTGEEGIEIADSEDIKIVVLDVML--PGIDGF 62 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAI 115 ++ +R + + +I ++ + G DD + KP + E+ R I Sbjct: 63 KVCETLRKKYKDLGIIMLTAKAEDYDKIMGLQYGTDDYMTKPFNPTELTLRIKSLERRVI 122 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + N E+ ++ + R G+ L E I++ + N+G+ + + ++ + Sbjct: 123 PEDEEDKKNIIESDIFKMDTYSRKFYKAGKELDLTPTEFLIMKTFLENKGRAITREELLN 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 ++G + + +V+ +I +LR K+ + +++ LGY + Sbjct: 183 KVWGE-EFIGDSKIVDVNIRRLRSKIEGDSADPKYIETVWGLGYRWN 228 >gi|300697799|ref|YP_003748460.1| transcriptional regulator [Ralstonia solanacearum CFBP2957] gi|299074523|emb|CBJ54074.1| Transcriptional regulatory protein, probable baeR protein, response regulator for mdtABCD and acrD [Ralstonia solanacearum CFBP2957] Length = 222 Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats. Identities = 41/222 (18%), Positives = 85/222 (38%), Gaps = 5/222 (2%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 M ++++D + E + ++ ++ L G+ Sbjct: 4 MILIVEDEPKLAALMGDYLRAAHYETEWVDDGTRAVQRVRETSPELVLLDLML--PGKDG 61 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R +RA S +P++ ++ L + G DD + KP RE+ R Sbjct: 62 LEICREVRAFSDLPIVMVTARVEEIDRLLGLELGADDYICKPFSPREL-VARIKTILRRV 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 +++ + ++G+ L E R+L L G+ +++ + IY Sbjct: 121 QRGGAQPESLLQIDNAAYSATLRGQRLDLTPVEFRLLSALANAPGRILSRANLLEQIYDD 180 Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 V + V++H+ LR+K+ G + + S +GY +D Sbjct: 181 H-RIVTDRTVDTHVKNLRRKMELVSPGTEMIHSVYGVGYRLD 221 >gi|297563588|ref|YP_003682562.1| two component transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296848036|gb|ADH70056.1| two component transcriptional regulator, winged helix family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 234 Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats. Identities = 47/223 (21%), Positives = 89/223 (39%), Gaps = 8/223 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++ +D D +G + + R D+ ++ L+ Sbjct: 6 LVAEDDVNQADLIRRYLEHEGHFVRVVHDGRAAVAAHHRDRPDLVVLDVM--MPVMSGLD 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 R +RA S V ++ ++ + + L D G DD V KP RE++ARV + RR + Sbjct: 64 ACRALRAESDVAVLMLTARSTEEDLLTGLDLGADDYVTKPYSPRELMARVRTLLRRSRRD 123 Query: 123 NNRAETG----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + A+ P+ V V G E ++L L A G+ + + Q+ I+ Sbjct: 124 PDDADRVLRAGPVAVDPSRHAVRVDGVPVTCTPAEFQLLAALAAQPGRVLTRAQLLEHIH 183 Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 G+ + E ++ H+ LR+KL + + + +GY + Sbjct: 184 GMS-RFITERTIDVHVKNLRRKLEPDPRRPVRLVTVYGVGYKL 225 >gi|254387470|ref|ZP_05002709.1| response regulator [Streptomyces clavuligerus ATCC 27064] gi|294815144|ref|ZP_06773787.1| Putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|326443505|ref|ZP_08218239.1| putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|197701196|gb|EDY47008.1| response regulator [Streptomyces clavuligerus ATCC 27064] gi|294327743|gb|EFG09386.1| Putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 221 Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats. Identities = 47/222 (21%), Positives = 90/222 (40%), Gaps = 10/222 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G +++ + + S D+ ++ L G Sbjct: 3 LLIVEDEKRLALSLARGLTAEGYAVDVVHDGLEGLHMASEGVHDLVILDIML--PGMNGY 60 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118 + +RA +P++ ++ + D+G DD + KP + ++ARV A R Sbjct: 61 RVCAALRAAGHDMPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARVKALLRRRG 120 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + G +RV + R V L +E +LE L G V+K QI ++ Sbjct: 121 RAGGSPVLAVGDLRVDTAARRVFVGETETTLTAKEFAVLEQLAVRAGDVVSKAQILEHVW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 F + N++E +IS LR+KL + + R GY + Sbjct: 181 D-FAYDGDPNIIEVYISSLRRKLGAP----RIQTVRGAGYRL 217 >gi|239917967|ref|YP_002957525.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Micrococcus luteus NCTC 2665] gi|239839174|gb|ACS30971.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Micrococcus luteus NCTC 2665] Length = 226 Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats. Identities = 47/220 (21%), Positives = 83/220 (37%), Gaps = 5/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + +DG R D+ ++ L G + Sbjct: 6 ILVVDDDEALAEMIGIVLRNDGFEPTFAADGTSALPAFHRERPDLVLLDLML--PGIDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120 E+ R+IRA S VP++ ++ + +SG DD V KP E++ARV A Sbjct: 64 EVCRLIRAESDVPIVMLTAKSDTADVVRGLESGADDYVPKPFKPAELVARVRARLREGEA 123 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 G + + G G L E +L L + + ++G Sbjct: 124 KPAEVLHIGDLEIDVAGHQVTRGGVGIALTPLEFDLLVALARRPRHVFTREMLLEEVWGY 183 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVD-SKRFLGYS 219 +A + +V H+ +LR K+ L V + R +GY Sbjct: 184 RHQA-DTRLVNVHVQRLRSKVEPDLENPCVVLTVRGVGYK 222 >gi|159029102|emb|CAO90091.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 226 Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats. Identities = 43/221 (19%), Positives = 93/221 (42%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + + +G + ++ + + D+ ++ L L Sbjct: 5 ILLVEDDPKLAEFIATELHLEGYQVTIASNGMDGLKIARDSSPDLLILDWML--PVISGL 62 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119 +L +R P+I ++ + + ++G DD V KP E+LARV A R Sbjct: 63 DLCLRLRKTGMEAPIIILTAKDEIPDRVTGLNAGADDYVTKPFSMEELLARVKARLRRTH 122 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 N + + R+ ++ L +E +LE+++ + + + + QI ++G Sbjct: 123 AQDLNIFTFEDLTLNCLAREVYRDSQLIELTAKEFDLLEFILRHPRQVLTREQILETVWG 182 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D + N++E +I LR KL + + + R +GY + Sbjct: 183 -YDFMGDSNIIEVYIRALRVKLESANPKRLIQTVRGVGYVL 222 >gi|150389310|ref|YP_001319359.1| two component transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149949172|gb|ABR47700.1| two component transcriptional regulator, winged helix family [Alkaliphilus metalliredigens QYMF] Length = 227 Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats. Identities = 40/222 (18%), Positives = 88/222 (39%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + +G + + + D+ ++ L + Sbjct: 6 ILIIEDEVKIARFLELELMHEGYQVAQAHDGRKGLEMAERETFDLIILDIML--PYMNGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118 E+ R IR +S+VP+I ++ + + D G +D + KP E + Sbjct: 64 EVLRKIRHNSEVPIIMLTAKDEVMDKVIGLDMGANDYITKPFAIEELLARIRSALKTKNH 123 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++G +++ D E L ++E +L Y + N + + +I ++ Sbjct: 124 GISEGRSLQSGSLKLDIDKHKVTYDEETVELTKKEFDLLHYFLENHDIVLTRDKILQTVW 183 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G +D + N+V+ +I LR K+ +K + + R +GY + Sbjct: 184 G-YDYMGDTNIVDVYIRYLRSKIDDKYNKKIIYTIRGVGYLL 224 >gi|329902856|ref|ZP_08273276.1| two component heavy metal response transcriptional regulator, winged helix family [Oxalobacteraceae bacterium IMCC9480] gi|327548595|gb|EGF33254.1| two component heavy metal response transcriptional regulator, winged helix family [Oxalobacteraceae bacterium IMCC9480] Length = 227 Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats. Identities = 40/223 (17%), Positives = 96/223 (43%), Gaps = 6/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + D ++G +++ + L +A D+ ++ L Sbjct: 3 LLVVEDETKIADYLRQGLTEEGFAVDLARNGLDGHHLAMTAPYDLIILDVML--PDVDGW 60 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118 + + +R A VP++ ++ S+ + + G DD + KP E+ R Sbjct: 61 RILQSLRDAGKNVPVLFLTARDSVADRVKGLELGADDYLVKPFAFSELLARVRTQLRRGS 120 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++ +R + + + R G+ L +E +LE L ++G+ +++ I S ++ Sbjct: 121 PAINADRFQIANLELDYLCRRATRSGQRINLTAKEFALLELLARHQGEVLSRALIASQVW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + + NV++ I +LR K+ + + + R +GY +D Sbjct: 181 DI-NFDSDTNVIDVAIRRLRAKMDDDFEPKLIHTVRGMGYRLD 222 >gi|295836940|ref|ZP_06823873.1| DNA-binding response regulator [Streptomyces sp. SPB74] gi|295826289|gb|EFG64773.1| DNA-binding response regulator [Streptomyces sp. SPB74] Length = 229 Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats. Identities = 42/219 (19%), Positives = 91/219 (41%), Gaps = 5/219 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + + +G + + D+ ++ L G +E Sbjct: 10 LVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFHDTKPDLVLLDLML--PGRDGIE 67 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLKV 121 + R+IRA S VP++ ++ + +SG DD + KP +E++AR+ A R + Sbjct: 68 VCRLIRAESGVPVVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEEP 127 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + G + + G + + + L E +L L + + + ++G + Sbjct: 128 APEQLTIGDLVIDVAGHSVKRESQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWG-Y 186 Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219 A + +V H+ +LR K+ + V + R +GY Sbjct: 187 RHAADTRLVNVHVQRLRSKVERDPERPEIVVTVRGVGYK 225 >gi|258511095|ref|YP_003184529.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477821|gb|ACV58140.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 233 Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats. Identities = 33/225 (14%), Positives = 76/225 (33%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD + D G + ++ + ++ L Sbjct: 7 ILVADDEKKIADVLSLYLEQAGFGVVCVDNGSEVLRRLEGLHPSLIILDLML--PDIPGE 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-----ILARVAAIY 116 E+ +RA S VP++ ++ + L G DD V KP + E + Sbjct: 65 EVCMAVRARSAVPILMLTAKHRDEDRLRGLQIGADDYVTKPFNPNEVVARVQAILRRTML 124 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 G + + + + G L E ++L L + + ++ ++ Sbjct: 125 DHPLADRLEYRDGDLVIDALSQVVYKGGINAELTATEYKLLVILSRHPRRVFSREELIER 184 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 ++G+ D + +++H+ LR K+ + + + +GY Sbjct: 185 VFGM-DFRGDVRTIDAHVKNLRAKIEDDPKSPVYIQTVYGMGYRF 228 >gi|255526633|ref|ZP_05393539.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296186093|ref|ZP_06854498.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] gi|255509666|gb|EET86000.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296049361|gb|EFG88790.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] Length = 227 Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats. Identities = 45/223 (20%), Positives = 92/223 (41%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + A +G + + L S ++ ++ L + Sbjct: 4 ILIVEDEEKISNVQKAYLEKEGYEVYTSTTGLKALELFDSIEFNLIILDLML--PDIQGE 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118 E+ +IIR S V + ++ +L+ ++ ++G D+ + KP RE + + Sbjct: 62 EICKIIRNKSDVYIFMVTAKSALEDRIEGLNTGADEYLVKPFSPRELVARVNSLFRRLVS 121 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 S + G + + D R +V+G L E IL L N+GK + + Q+ ++ Sbjct: 122 NNSSILCFDNGNLEIHKDSRIVKVKGLEVSLTPNEFDILYSLAMNKGKVLTREQLIDRVF 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 G+ D + V+ HI +RKK+ + + LGY Sbjct: 182 GM-DFEGFDRTVDVHIKNIRKKIEEDSKNPKYILTVTKLGYKF 223 >gi|229060536|ref|ZP_04197897.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH603] gi|228718780|gb|EEL70404.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH603] Length = 224 Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats. Identities = 38/220 (17%), Positives = 96/220 (43%), Gaps = 11/220 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++ DD + A F +G + E + + D++ ++ + + Sbjct: 13 LIADDEQDMLKILKAYFEKEGFEVLLAKDGEEALQIFYDEKIDLAILDWMMPKS--SGIT 70 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + I+ +S V ++ ++ + L SG D+ V KP H ++ R ++L Sbjct: 71 VCQEIKKNSSVKVLMLTAKSESEDELAALQSGADEYVKKPFHPGVLITRA----KKLVQH 126 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 + + +++ + + + E ++++ + ++G + + ++ ++G FD Sbjct: 127 EDVIQVQDLKIDFTKNKVYKNEKELDITKTELQLIKCFLNHKGTILTRKKLLDIVWG-FD 185 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 EE V++H+ +LRKK+ + + + R LGYS++ Sbjct: 186 YFGEERTVDTHVRRLRKKIGE----NIIKTHRGLGYSLEE 221 >gi|223984503|ref|ZP_03634635.1| hypothetical protein HOLDEFILI_01930 [Holdemania filiformis DSM 12042] gi|223963489|gb|EEF67869.1| hypothetical protein HOLDEFILI_01930 [Holdemania filiformis DSM 12042] Length = 224 Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats. Identities = 49/223 (21%), Positives = 96/223 (43%), Gaps = 8/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ +G +++ D+ ++ Sbjct: 4 ILVVDDEQRIREMIRKYAEYEGFAVDEACDGLEAVDKAMKENYDLIVMDIM--MPNLDGF 61 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 R IR + P+I +S + FD GVDD V KP +E++ R+ AI +R Sbjct: 62 SACREIRKTHENVPVILLSALGEEYDKIHGFDLGVDDYVVKPFSPKELMMRIHAILKRTS 121 Query: 121 VSNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 S + + + + GR +++ E L +E +L YL+ NRG + + ++ ++ Sbjct: 122 QSEKKELIKINDLTIDFTGRIVKIKDEKLNLSPKEYDLLFYLVKNRGIALTREKLLQNVW 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 G +D +E +++HI LRK LR + + R +GY + Sbjct: 182 G-YDFFGDERTLDTHIKLLRKNLREYS--RYITTLRGVGYRFE 221 >gi|251795715|ref|YP_003010446.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247543341|gb|ACT00360.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 229 Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats. Identities = 46/229 (20%), Positives = 89/229 (38%), Gaps = 13/229 (5%) Query: 1 MF---VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKG 57 M +LI+D + + +G ++ E + S D+ ++ + Sbjct: 1 MIKSVLLIEDDTTIAELQRDYLEINGFEVQVAADGEAGLAMSLSGHYDLVILDLMI--PK 58 Query: 58 EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 E+ + IR +P++ ++ + G DD + KP E++ARV A Sbjct: 59 MNGFEVCKKIREKQDIPILIVTSLHDDIDVIRGLGLGADDYITKPFKPAELVARVKAHLA 118 Query: 118 RLKV------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 R + N + + + D R V E L +E +L +L ++ K +K Sbjct: 119 RYERLVGKKDVKNIVQIRDLYIDPDTRKVYVNDEEAVLTTKEFDLLYFLASHPNKVFSKE 178 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYS 219 +F I+G+ D + V HI K+R+K+ +++ GY Sbjct: 179 HLFERIWGV-DALGDMQTVTVHIRKIREKIEKDSANPVYIETVWGAGYR 226 >gi|161367585|ref|NP_288428.2| transcriptional regulatory protein YedW [Escherichia coli O157:H7 str. EDL933] gi|161984954|ref|YP_407518.2| transcriptional regulatory protein YedW [Shigella boydii Sb227] gi|162139781|ref|NP_310734.2| transcriptional regulatory protein YedW [Escherichia coli O157:H7 str. Sakai] gi|209919389|ref|YP_002293473.1| transcriptional regulatory protein YedW [Escherichia coli SE11] gi|218689962|ref|YP_002398174.1| transcriptional regulatory protein YedW [Escherichia coli ED1a] gi|218705460|ref|YP_002412979.1| transcriptional regulatory protein YedW [Escherichia coli UMN026] gi|254161973|ref|YP_003045081.1| transcriptional regulatory protein YedW [Escherichia coli B str. REL606] gi|254793621|ref|YP_003078458.1| transcriptional regulatory protein YedW [Escherichia coli O157:H7 str. TW14359] gi|256017840|ref|ZP_05431705.1| transcriptional regulatory protein YedW [Shigella sp. D9] gi|260844365|ref|YP_003222143.1| putative DNA-binding response regulator in two-component system with YedV [Escherichia coli O103:H2 str. 12009] gi|260855938|ref|YP_003229829.1| putative DNA-binding response regulator in two-component system with YedV [Escherichia coli O26:H11 str. 11368] gi|260868559|ref|YP_003234961.1| putative DNA-binding response regulator in two-component system with YedV [Escherichia coli O111:H- str. 11128] gi|312973814|ref|ZP_07787986.1| transcriptional activator protein irlR [Escherichia coli 1827-70] gi|209912648|dbj|BAG77722.1| two-component response regulator [Escherichia coli SE11] gi|218427526|emb|CAR08421.2| DNA-binding response regulator in two-component system with YedV [Escherichia coli ED1a] gi|218432557|emb|CAR13450.1| DNA-binding response regulator in two-component system with YedV [Escherichia coli UMN026] gi|242377633|emb|CAQ32391.1| predicted DNA-binding response regulator in two-component system with YedV [Escherichia coli BL21(DE3)] gi|253973874|gb|ACT39545.1| predicted DNA-binding response regulator in two-component system with YedV [Escherichia coli B str. REL606] gi|253978068|gb|ACT43738.1| predicted DNA-binding response regulator in two-component system with YedV [Escherichia coli BL21(DE3)] gi|254593021|gb|ACT72382.1| predicted DNA-binding response regulator in two-component system with YedV [Escherichia coli O157:H7 str. TW14359] gi|257754587|dbj|BAI26089.1| predicted DNA-binding response regulator in two-component system with YedV [Escherichia coli O26:H11 str. 11368] gi|257759512|dbj|BAI31009.1| predicted DNA-binding response regulator in two-component system with YedV [Escherichia coli O103:H2 str. 12009] gi|257764915|dbj|BAI36410.1| predicted DNA-binding response regulator in two-component system with YedV [Escherichia coli O111:H- str. 11128] gi|310332409|gb|EFP99644.1| transcriptional activator protein irlR [Escherichia coli 1827-70] gi|320647173|gb|EFX16006.1| transcriptional regulatory protein YedW [Escherichia coli O157:H- str. 493-89] gi|320652458|gb|EFX20756.1| transcriptional regulatory protein YedW [Escherichia coli O157:H- str. H 2687] gi|320657782|gb|EFX25552.1| transcriptional regulatory protein YedW [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|323152702|gb|EFZ38974.1| transcriptional activator protein irlR [Escherichia coli EPECa14] gi|323158555|gb|EFZ44569.1| transcriptional activator protein irlR [Escherichia coli E128010] gi|323174649|gb|EFZ60269.1| transcriptional activator protein irlR [Escherichia coli LT-68] gi|323180780|gb|EFZ66320.1| transcriptional activator protein irlR [Escherichia coli 1180] gi|323183951|gb|EFZ69338.1| transcriptional activator protein irlR [Escherichia coli 1357] gi|327253104|gb|EGE64758.1| transcriptional activator protein irlR [Escherichia coli STEC_7v] gi|332095480|gb|EGJ00496.1| transcriptional activator protein irlR [Shigella dysenteriae 155-74] gi|332096928|gb|EGJ01917.1| transcriptional activator protein irlR [Shigella boydii 3594-74] gi|332343693|gb|AEE57027.1| transcriptional activator protein IrlR [Escherichia coli UMNK88] Length = 223 Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats. Identities = 50/219 (22%), Positives = 97/219 (44%), Gaps = 3/219 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D ++ + G ++ + +L + ++ L G Sbjct: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIML--PGMDGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + +R Q P+I ++ S+ + DSG +D + KP E+LARV A R+ Sbjct: 61 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 N+ E +R+ S + L R+E ++L L + G+ + +T I S I+G+ Sbjct: 121 LNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 179 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + N V+ I +LR K+ + + + R +GYS Sbjct: 180 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 >gi|332523540|ref|ZP_08399792.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Streptococcus porcinus str. Jelinkova 176] gi|332314804|gb|EGJ27789.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Streptococcus porcinus str. Jelinkova 176] Length = 236 Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 43/231 (18%), Positives = 85/231 (36%), Gaps = 16/231 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L+DD + +G E L S D ++ L +E Sbjct: 6 LLVDDEEHILRLLDYHLSKEGYETELVEDGRTALKLAESEHYDFILLDIML--PQLDGIE 63 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV--------- 112 + + IRA P++ +S + + G DD + KP RE++AR+ Sbjct: 64 VCKRIRAKGIQTPIMMVSAKSDEFDKVLALELGADDYMTKPFSPRELVARLKAILRRTDK 123 Query: 113 --AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + + + ++ + + + L +E +L YL+ + + + Sbjct: 124 EDNRQDNSERFAEETWTFDNLVIYPERHEIYKDKILLNLTPKEFELLLYLVKHANMTLTR 183 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 ++ I+G +D E +V+ HI KLR K+ + + + R GY Sbjct: 184 ERLLERIWG-YDFGQETRLVDVHIGKLRDKIEDDPKNPKFIKTIRGYGYKF 233 >gi|294498881|ref|YP_003562581.1| two-component response regulator [Bacillus megaterium QM B1551] gi|294348818|gb|ADE69147.1| two-component response regulator [Bacillus megaterium QM B1551] Length = 224 Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 51/220 (23%), Positives = 94/220 (42%), Gaps = 5/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD +++ + G + E R D++ ++ + K Sbjct: 4 ILVADDDQHIRELISLYLENQGFKIIKAADGEEAWAKMEEFRIDLAVVDIMMPFK--DGW 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL + I+ + +P++ ++ L FD G DD V KP +E++ARV A+ RR +V Sbjct: 62 ELTKEIKEYFDIPVLMVTARGESHDKLKGFDIGTDDYVVKPFDPQEMVARVKALLRRYRV 121 Query: 122 SNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 N + LP +E +L L+++ GK + Q+ I+G Sbjct: 122 EANNVIYMGNIKLDRTKLEMSAGETSEQLPLKEFELLFTLVSSPGKIFTRDQLIQLIWG- 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYS 219 +D +E V+ HI +LR++L + + + R LGY Sbjct: 181 YDYEGDERTVDVHIKRLRERLNHMKNVGMEIKTIRGLGYR 220 >gi|284047483|ref|YP_003397822.1| two component transcriptional regulator, winged helix family [Acidaminococcus fermentans DSM 20731] gi|283951704|gb|ADB46507.1| two component transcriptional regulator, winged helix family [Acidaminococcus fermentans DSM 20731] Length = 224 Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 42/223 (18%), Positives = 89/223 (39%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + S++ + + +A D+ ++ L Sbjct: 3 ILVVEDEPTLNKIIAKRLKIEAYSVDCAFNGKEALDYLDAAEYDLLIVDIM--MPEMDGL 60 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYR 117 L + +R S+VP++ ++ S Q + DSG DD + KP E + + Sbjct: 61 TLVKKLRDGGSRVPVLFLTALDSTQDKVTGLDSGGDDYLVKPFEFDELLARIRSLLRRSN 120 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + R + + + G+ L +E +L+YL+ N+G +++ QI Sbjct: 121 AQQTARTRLTLADLTLDTRTHQVTRGGQEIALTPKEFSVLDYLLRNQGTVLSREQILEHA 180 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + F N+V+ +I LRKK+ + + R GY + Sbjct: 181 WD-FSYEGYSNMVDVYIKTLRKKIDRDFEPKLLHTVRGTGYVL 222 >gi|223983413|ref|ZP_03633599.1| hypothetical protein HOLDEFILI_00879 [Holdemania filiformis DSM 12042] gi|223964585|gb|EEF68911.1| hypothetical protein HOLDEFILI_00879 [Holdemania filiformis DSM 12042] Length = 232 Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 46/222 (20%), Positives = 88/222 (39%), Gaps = 6/222 (2%) Query: 5 IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64 ++D + +G +G +++ + + E L + D+ ++ L +L Sbjct: 7 VEDDLSLINGLSFALNKEGYAVDVARTKQEAEALWLKEKFDLVILDVSL--PDGSGYDLC 64 Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH---HREILARVAAIYRRLKV 121 R IR S VP+I ++ + D G DD + KP + + Sbjct: 65 RQIRQTSTVPIIFLTAADEETEIIMGLDLGGDDYITKPFKLAVFLSRIHALLRRQENFSP 124 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 ++ + IRV R GE+ L E ++L LM N + + QI S ++ Sbjct: 125 ADRELASNGIRVQRLERSVYKNGELVNLTAGEYKLLCLLMENPNQVLTPEQILSKLWDCD 184 Query: 182 DEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 + V+ N + +I +LR K+ + + + R LGY + Sbjct: 185 ENYVDANTLTVYIRRLRAKIEDDPSDPKKIVTLRRLGYKWNV 226 >gi|50843550|ref|YP_056777.1| putative two-component response regulator [Propionibacterium acnes KPA171202] gi|50841152|gb|AAT83819.1| putative two-component response regulator [Propionibacterium acnes KPA171202] gi|315107744|gb|EFT79720.1| response regulator receiver domain protein [Propionibacterium acnes HL030PA1] Length = 232 Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 45/230 (19%), Positives = 91/230 (39%), Gaps = 11/230 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V++ G ++ S D ++ L Sbjct: 5 ILVVDDDRAVRESLARSLQYSGYEVDSAADGVEALAHLSGTHPDAVIMDVM--MPRLDGL 62 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E R++R++ P++ ++ ++ +D D+G DD + KP E+LAR+ A+ RR + Sbjct: 63 EATRMLRSNGNDVPILILTARDAVDDRVDGLDAGADDYMVKPFALDELLARLRALTRRSR 122 Query: 121 VSNNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 E + R+ L R E +L + N + + ++ + Sbjct: 123 PEPGPDEAPEHLSFADLTLDPATREVTRGNRRISLTRTEFALLTVFLQNPERVLERSWLL 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI-DWN 223 ++G FD N +E +I LR+K + + + R +GY + + N Sbjct: 183 HEVWG-FDFPTTANSLEVYIGYLRRKTEHDCEARLIHTVRGVGYVLREAN 231 >gi|49081852|gb|AAT50326.1| PA5360 [synthetic construct] Length = 230 Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 46/224 (20%), Positives = 93/224 (41%), Gaps = 9/224 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A +++ G + + + + D+ ++ L G + Sbjct: 6 ILIVDDEAPIREMIAVALEMAGYECLEAENTQQAHAVIVDRKPDLILLDWML--PGTSGI 63 Query: 62 ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 EL R ++ +P+I ++ + G DD + KP RE++AR+ A+ RR Sbjct: 64 ELARRLKRDELTVDIPIIMLTAKGEEDNKIQGLGVGADDYITKPFSPRELVARLKAVLRR 123 Query: 119 LKVSNNRAETGPIR--VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 ++ A + + G+ + E R+L++ M ++ + + Q+ Sbjct: 124 TGPGDSEAPIEVGGLLLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAYTRGQLLDQ 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + VEE V+ HI +LRK L + V + R GY Sbjct: 184 VWG-GNVYVEERTVDVHIRRLRKALGEVYE-NLVQTVRGTGYRF 225 >gi|320530934|ref|ZP_08031967.1| response regulator receiver domain protein [Selenomonas artemidis F0399] gi|320136799|gb|EFW28748.1| response regulator receiver domain protein [Selenomonas artemidis F0399] Length = 235 Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 39/228 (17%), Positives = 83/228 (36%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + + G S++ + + + + + + ++ L G Sbjct: 4 ILLVEDDTDIAELERDYLEASGFSVDISSDGDEGQRMALTGDYQLVLLDVML--PGADGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R +R +P++ +S + G DD + KP E+ ARV A R Sbjct: 62 AICRAVRKELDIPILMVSARLEDIDKIRALGLGADDYIVKPFSPSELAARVKAHITRYNR 121 Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 G + + V G L RE +L +L + +K ++ Sbjct: 122 LKGGEPTEPMSLRFGTLEIQPWTHRVFVAGREVHLASREFELLLFLAEHPQIVFSKETLY 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221 ++ L D + V H+++LR+K+ + + + GY + Sbjct: 182 DRVWDL-DAMGSTSTVSVHMNRLREKIEEDPSNPQWLQTVWGSGYRFN 228 >gi|297537697|ref|YP_003673466.1| winged helix family two component transcriptional regulator [Methylotenera sp. 301] gi|297257044|gb|ADI28889.1| two component transcriptional regulator, winged helix family [Methylotenera sp. 301] Length = 230 Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 46/226 (20%), Positives = 92/226 (40%), Gaps = 5/226 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D +++ G + S+E + L D+ ++ L G + Sbjct: 5 ILVVEDEPAIQELLALNITQAGHNAMRALSVEIAQNLMRETIPDLILLDWMLPGMNGLEF 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118 L + +P+I ++ + + G DD V KP RE+ AR+ A R Sbjct: 65 ARLLKSDNLTKTIPIIMLTARGDEYDKVRGLEVGADDYVTKPFSPRELNARIKAVLRRRA 124 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 +++++ E +R+ + L E R+L + M N + ++Q+ ++ Sbjct: 125 PQMTDDPIEMAGLRLDPTTHRVTGNNKTIDLGPTEFRLLHFFMTNAERVHTRSQLLDKVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI-DWN 223 G VE+ V+ HI +LR L D + + R GY + + N Sbjct: 185 GDR-VFVEDRTVDVHIRRLRNALSLSGHEDLIQTVRGAGYRLSEKN 229 >gi|255320055|ref|ZP_05361251.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter radioresistens SK82] gi|262380561|ref|ZP_06073715.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter radioresistens SH164] gi|255302923|gb|EET82144.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter radioresistens SK82] gi|262298007|gb|EEY85922.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter radioresistens SH164] Length = 236 Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 40/224 (17%), Positives = 89/224 (39%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ G + + R + ++ + G G + Sbjct: 6 ILIVDDELPIREMIHTSLDMAGFQCLQAEDAKQAHQMIVDQRPALILLDWMMPG-GISGV 64 Query: 62 ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 +L R ++ S++P+I ++ + D+G DD + KP RE+++R+ A+ RR Sbjct: 65 DLCRRLKRDENLSEIPVIMLTARGEEDHKVQGLDAGADDYMTKPFSTRELVSRIKAVLRR 124 Query: 119 LKVSNNRAETGPIRV--FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + + + + E R+L + M + + + Q+ Sbjct: 125 ANALSGEKTIDANGLLLDPVSQRVSFGDSILEMGPTEYRLLAFFMTHPERAYTRAQLLDQ 184 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + +E+ ++ HI +LRK L V + R GY Sbjct: 185 VWG-GNVYIEDRTIDVHIRRLRKVLEPYGADRFVQTVRGTGYRF 227 >gi|255323823|ref|ZP_05364949.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Corynebacterium tuberculostearicum SK141] gi|255299003|gb|EET78294.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Corynebacterium tuberculostearicum SK141] Length = 230 Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 39/221 (17%), Positives = 86/221 (38%), Gaps = 6/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + +G+ D+ ++ L G + Sbjct: 5 ILVVDDDPAISEMLTIVLESEGLKPIPVMDGNDAVPAFEQHEPDLILLDLML--PGMNGV 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R IR S VP++ ++ + +SG DD + KP +E++AR+ A RR Sbjct: 63 DICRAIRRESSVPIVMLTAKTDTVDVVLGLESGADDYITKPFKPKELIARIRARLRRTDS 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFP--LPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + V + + L E +L + G+ + + +++G Sbjct: 123 AESEILEVADLVIDVPEHTVRRTDGTELNLTPLEFDLLLEMARRPGQVHTRESLLDSVWG 182 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVD-SKRFLGYS 219 + A + +V H+ +LR K+ + + + R +GY Sbjct: 183 YRN-ASDTRLVNVHVQRLRAKIEHDPEDPQIVLTVRGVGYK 222 >gi|225028279|ref|ZP_03717471.1| hypothetical protein EUBHAL_02551 [Eubacterium hallii DSM 3353] gi|224954325|gb|EEG35534.1| hypothetical protein EUBHAL_02551 [Eubacterium hallii DSM 3353] Length = 224 Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 48/221 (21%), Positives = 96/221 (43%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G ++ + + + D ++A L G+ Sbjct: 3 ILVVEDEPDLNHIIAKHLQAEGYIVDSCFNGNDAVYYITEESYDAILLDAML--PGKDGF 60 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ + IR+ P++ ++ + + D G DD V KP E+LAR+ I +R Sbjct: 61 EVLKEIRSQKIETPVMFLTARDQTEDIVTGLDFGADDYVVKPFSFEEVLARLRVIIKRSP 120 Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + +D + G L +E ILEY++ N+ +++ QI S +G Sbjct: 121 QEHGTTYECADLLIDTDKKSVTRAGTDIELSPKEYAILEYMVRNKNIALSRLQIESNAWG 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 L D E N+++ +I LRKK+ + + + R +GY + Sbjct: 181 L-DFEDESNIIDVYIRYLRKKIDDDFDVKLIQTVRGIGYML 220 >gi|315037328|ref|YP_004030896.1| response regulator [Lactobacillus amylovorus GRL 1112] gi|325955796|ref|YP_004286406.1| response regulator [Lactobacillus acidophilus 30SC] gi|312275461|gb|ADQ58101.1| putative response regulator [Lactobacillus amylovorus GRL 1112] gi|325332361|gb|ADZ06269.1| response regulator [Lactobacillus acidophilus 30SC] gi|327182633|gb|AEA31080.1| response regulator [Lactobacillus amylovorus GRL 1118] Length = 238 Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 46/229 (20%), Positives = 91/229 (39%), Gaps = 15/229 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G ++ E D+ ++ L + L Sbjct: 5 ILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVQKVDEYDPDLMILDLML--PKKDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R +P+I ++ + + + G DD V KP +RE++ARV A RR + Sbjct: 63 EVAREVRQTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRDI 122 Query: 122 SNNRAETGPIRVFSD-----------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + E G+ L RE +L YL + G+ + + Sbjct: 123 VKKAEAANQEEPDKNIKIGNLLIMPDAYIVEKNGKKIELTHREFELLYYLAQHMGQVMTR 182 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGY 218 + ++G +D + V+ + +LR+K+ N + ++R +GY Sbjct: 183 EHLLQTVWG-YDYFGDVRTVDVTVHRLREKIENNPIQPQVLVTRRGVGY 230 >gi|295837253|ref|ZP_06824186.1| DNA-binding response regulator [Streptomyces sp. SPB74] gi|295826427|gb|EFG64844.1| DNA-binding response regulator [Streptomyces sp. SPB74] Length = 237 Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 47/229 (20%), Positives = 95/229 (41%), Gaps = 18/229 (7%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 + ++D ++++ G + A D++ ++ + G + Sbjct: 14 LFVEDDDVIREATQLALERVGFRVTAVPDGLQGLESFRVAAPDIALLDVMV--PGMDGVS 71 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121 L R IR S VP+I +S + ++G DD V KP ++AR+ A+ RR Sbjct: 72 LCRRIRDESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDVSVLVARLRAVMRRFGHA 131 Query: 122 ----------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 ++ G + V ++G + +G+ L E R+L A G +++ Sbjct: 132 GGGGEPVETGADGPLRFGDLEVDTEGMEVRREGKRIALTPTEMRLLLEFSAAPGTVLSRD 191 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 Q+ ++ + + VV+ H+ +LR K+ G D +++ R GY + Sbjct: 192 QLLERVWD-YGWGGDTRVVDVHVQRLRAKI----GQDRIETVRGFGYKL 235 >gi|256851719|ref|ZP_05557107.1| phosphate regulon transcriptional regulatory protein PhoB [Lactobacillus jensenii 27-2-CHN] gi|260661563|ref|ZP_05862475.1| phosphate regulon transcriptional regulatory protein PhoB [Lactobacillus jensenii 115-3-CHN] gi|282933547|ref|ZP_06338917.1| transcriptional regulatory protein WalR [Lactobacillus jensenii 208-1] gi|297205337|ref|ZP_06922733.1| response regulator [Lactobacillus jensenii JV-V16] gi|256615677|gb|EEU20866.1| phosphate regulon transcriptional regulatory protein PhoB [Lactobacillus jensenii 27-2-CHN] gi|260547620|gb|EEX23598.1| phosphate regulon transcriptional regulatory protein PhoB [Lactobacillus jensenii 115-3-CHN] gi|281302290|gb|EFA94522.1| transcriptional regulatory protein WalR [Lactobacillus jensenii 208-1] gi|297149915|gb|EFH30212.1| response regulator [Lactobacillus jensenii JV-V16] Length = 237 Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 42/228 (18%), Positives = 88/228 (38%), Gaps = 14/228 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G ++ E + D+ ++ L + L Sbjct: 5 ILVVDDEKPISDIIKFNLTKEGFEVDTAYDGEEAVKKVNEINPDLMILDLML--PKKDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILAR 111 E+ R +R +P+I ++ + + + G DD V KP +R Sbjct: 63 EVAREVRQTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRDI 122 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 V + N G + + D E G+ L RE +L YL ++ G+ + + Sbjct: 123 VQKQVDENENENKNITIGNLVIMPDAYIVEKDGQKIELTHREFELLHYLASHMGQVMTRE 182 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGY 218 + +G +D + V+ + +LR+K+ + + ++R +GY Sbjct: 183 HLLQTAWG-YDYFGDVRTVDVTVHRLREKIEDNPIQPKILVTRRGVGY 229 >gi|170023656|ref|YP_001720161.1| two component transcriptional regulator [Yersinia pseudotuberculosis YPIII] gi|169750190|gb|ACA67708.1| two component transcriptional regulator, winged helix family [Yersinia pseudotuberculosis YPIII] Length = 235 Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 48/226 (21%), Positives = 90/226 (39%), Gaps = 11/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ +D A +++G + + +G + L + D ++ Sbjct: 3 ILIAEDNAHIRNGLMEVLAHEGYRPIAAENGVQALALYRQQQPDFIILDIM--MPELDGY 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ R IR H P+I +S + + G DD ++KP E+ AR+ I RR Sbjct: 61 KVCREIRKHDWQTPIIFLSAKDEEIDRVIGLELGADDYISKPFGIHEMRARIKTIVRRCL 120 Query: 121 VSNNR------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 G + VF + L RE IL YL ++G+ + + +F Sbjct: 121 RKVPESAEDAGFPFGDLMVFPNELCAIRGETRLELSLREVNILRYLYQHKGRVITRDMLF 180 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219 A++G +D + ++ HISKLRK + + + + + GY Sbjct: 181 DAVWG-YDHLPQSRTLDQHISKLRKTIELDPVHPVLIRTVHGAGYR 225 >gi|109896549|ref|YP_659804.1| two component transcriptional regulator [Pseudoalteromonas atlantica T6c] gi|109698830|gb|ABG38750.1| two component transcriptional regulator, winged helix family [Pseudoalteromonas atlantica T6c] Length = 239 Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 44/232 (18%), Positives = 90/232 (38%), Gaps = 15/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + + GV ++ E S DV ++ L L Sbjct: 5 ILIVEDDLDIANLMRVNLLELGVEIDHQVDGETALHQALSNEYDVILLDVML--PNMSGL 62 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ R IR +I ++ S + + G DD + KP RE+ ARV + R++ Sbjct: 63 DICRKIRDERPMQIIIMLTSKNSETDRVLGLELGADDYMTKPFSVRELQARVRSQLRKVH 122 Query: 121 VSNNRAETGPIRV----------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + + L E +L +L ++ G+ ++ Sbjct: 123 ALRQSHVPSQQPDEALNTGDLRIDQKTHQVFLAEQELVLTATEFELLHHLASHPGQVFSR 182 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 +Q+ +++G + + E+ V SHI++LR KL + V + +GY + Sbjct: 183 SQLLESVWG-YHHSGYEHTVNSHINRLRAKLENDATSPKIVQTVWGVGYKFN 233 >gi|23014270|ref|ZP_00054096.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Magnetospirillum magnetotacticum MS-1] Length = 229 Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 49/223 (21%), Positives = 96/223 (43%), Gaps = 6/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + D + G S D+ ++ L G Sbjct: 7 ILVVEDEPAIADVLVEYLRHAGYSPSHVADGRVALDEIRRDPPDLVVLDIML--PGMDGT 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R +R S +P+I ++ L + G DD + KP RE++AR+ +++RR++ Sbjct: 65 AVCRELRRFSTIPVIMVTARVEEIDRLLGLEVGADDYICKPFSPREVVARITSLFRRMEW 124 Query: 122 SNNRAETGPIR--VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 N +GP + + G + G PL E R++ L ++ G+ + QI Y Sbjct: 125 GNPVPASGPAQLEIDDAGLRICINGNRLPLTPTEFRLMRLLASSPGRIYTRAQILDLAY- 183 Query: 180 LFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221 D+ V + +++SH+ +RKK+ + D + S +GY + Sbjct: 184 HGDQDVSDRIIDSHVKNIRKKISSVWPDVDVIHSVYGIGYRYE 226 >gi|309811547|ref|ZP_07705327.1| response regulator MprA [Dermacoccus sp. Ellin185] gi|308434490|gb|EFP58342.1| response regulator MprA [Dermacoccus sp. Ellin185] Length = 231 Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 44/223 (19%), Positives = 90/223 (40%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D +++ G + + L ++ D++ ++ L Sbjct: 8 ILIVEDDTNIRELLATSMKFAGFDVSVAGTGSEGLALAATQEFDLAVLDVML--PDMDGF 65 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPI---HHREILARVAAIYR 117 + +R + P++ ++ S+ T+ G DD + KP + V + Sbjct: 66 AVTSRLREGGRELPIVFLTARDSVDDTVKGLTVGGDDYITKPFSLEEVVARIRAVLRRTK 125 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 G + + D + G V + E ++L YLM N G+ V+K QI + Sbjct: 126 ADDSDGPTVTVGDLELDDDSHEVRRAGRVIDVSPTEFKLLRYLMLNAGRVVSKAQILDHV 185 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + +D E +VES+IS LR+K+ + +KR +GY + Sbjct: 186 WD-YDFRGEAGIVESYISYLRRKIDVDGLEPLIHTKRGVGYVL 227 >gi|293380991|ref|ZP_06627022.1| response regulator receiver domain protein [Lactobacillus crispatus 214-1] gi|290922454|gb|EFD99425.1| response regulator receiver domain protein [Lactobacillus crispatus 214-1] Length = 239 Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 46/232 (19%), Positives = 93/232 (40%), Gaps = 14/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D V + + + L + + + ++ L + Sbjct: 8 ILLVEDEESVASFVKTELEFEDYQVVWAEDGKKALDLFTQEKPTLILLDWML--PVYDGM 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARVAA 114 + R IR S VP+I ++ S D G+DD + KP R +L R+ Sbjct: 66 TVLRRIRKQSDVPIIMLTAKNSASDISSALDQGLDDYLTKPFEIEELLARIRVVLRRLEK 125 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + ++ V + E GP+++ + E L +E ++ LM + K ++ ++ Sbjct: 126 MRQQNDVPDTSLEFGPLKIDLLKHEFYCDTEQIYLTPKEFALITELMRDPEKVKSRDELL 185 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY---SIDWN 223 ++G +D + N V+ +I +R K+ N + + R LGY +D N Sbjct: 186 DTVWG-YDFVGQTNTVDVYIRTIRNKIGNPY-KKIIKTMRGLGYCLRKLDDN 235 >gi|288555847|ref|YP_003427782.1| winged helix family two component transcriptional regulator [Bacillus pseudofirmus OF4] gi|288547007|gb|ADC50890.1| two component transcriptional regulator, winged helix family protein [Bacillus pseudofirmus OF4] Length = 231 Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 43/229 (18%), Positives = 92/229 (40%), Gaps = 15/229 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++ +G + E L SS + D++ ++ Sbjct: 4 ILIVEDERTMQRLLTLHLTKEGFETITADHGEEAISLLSSHQIDLAVVDVM--MPVMDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + +R S +P+I ++ + ++ G DD ++KP E++AR+ A+ RR Sbjct: 62 DFVKKLRETSTLPVIFLTARSDEKDRIEGLMLGGDDYLSKPFSKGELIARIQAVLRRTYQ 121 Query: 122 SNNRAETGPIRV----------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 N R +V L +E +L +L ++G+ + Sbjct: 122 RNRNIIGHIDEREILSLEGIQLNRKARSVKVDQIPISLTVKEFDLLLFLFEHQGQVFTRE 181 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + ++++GL D E V++HI LR KL+ + + +GY + Sbjct: 182 HLLTSVWGL-DYEGTERTVDTHIKTLRMKLKPYGN--VIQTVWGIGYKL 227 >gi|237666049|ref|ZP_04526037.1| DNA-binding response regulator [Clostridium butyricum E4 str. BoNT E BL5262] gi|237658996|gb|EEP56548.1| DNA-binding response regulator [Clostridium butyricum E4 str. BoNT E BL5262] Length = 234 Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 46/231 (19%), Positives = 91/231 (39%), Gaps = 13/231 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ +D + + G + ++ D++ ++ LI Sbjct: 5 ILVAEDDNDIVKILKLYLDNSGFEVVYVDNGMDALKKIQEEHIDLALLD--LIMPIMNGY 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL + IR S +P++ S + + G DD + KP E++AR+ + RR Sbjct: 63 ELTKNIREISNIPILIFSAKYEISDKILALSIGADDYLTKPFEPMEVIARINSNLRRCYE 122 Query: 122 SNNRAETGPIRV---------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 ++R + D E G + E +IL LM G+ +K Q Sbjct: 123 LDDRFKNQDKNFKLQVGELNLDLDNFTIEKNGLPINVTATEYKILAKLMKYPGRVYSKAQ 182 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDW 222 ++ +I G + +++ + HIS LR+K+ + + + R +GY I+ Sbjct: 183 LYESINGEYC-DSDDSTMMVHISNLREKIEEDPKNPKYIKTVRGIGYKIEV 232 >gi|206976990|ref|ZP_03237891.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217962303|ref|YP_002340873.1| DNA-binding response regulator [Bacillus cereus AH187] gi|222098284|ref|YP_002532341.1| two-component response regulator [Bacillus cereus Q1] gi|229141548|ref|ZP_04270082.1| Two-component response regulator [Bacillus cereus BDRD-ST26] gi|206744795|gb|EDZ56201.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217065924|gb|ACJ80174.1| DNA-binding response regulator [Bacillus cereus AH187] gi|221242342|gb|ACM15052.1| Two-component response regulator [Bacillus cereus Q1] gi|228641948|gb|EEK98245.1| Two-component response regulator [Bacillus cereus BDRD-ST26] Length = 229 Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 52/229 (22%), Positives = 90/229 (39%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++++ F + + + + D+ ++ L Sbjct: 5 ILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEVVDLVILDIML--PELDGW 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR-------EILARVAA 114 + R IR S+VP+I ++ TL F+ G DD V KP +L Sbjct: 63 SVCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKI 122 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + L+ ++ I V R V L E IL YLM N+G + + Q+ Sbjct: 123 TKQLLENEDDTLSIHGIHVHFPSRTVTVDKTDINLTHTEFEILAYLMKNQGIVLTREQLI 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 S I+G ++ A ++ V SHI LR KL K + + GY + N Sbjct: 183 SRIWG-YEFAGDDRTVNSHIRNLRNKLGEK--AKYITTVVRTGYKFEGN 228 >gi|121596367|ref|YP_988263.1| two component transcriptional regulator [Acidovorax sp. JS42] gi|120608447|gb|ABM44187.1| two component transcriptional regulator, winged helix family [Acidovorax sp. JS42] Length = 223 Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 53/221 (23%), Positives = 104/221 (47%), Gaps = 9/221 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++D + G ++E + +L D ++ L L Sbjct: 3 ILVVEDEPTLRDQLVQAIAAAGHTVEAASDGAQAHYLGEVEDFDAVVLDLGL--PVLDGL 60 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119 + R R A +P++ ++ + + D+G DD + KP H E+LAR+ A+ RRL Sbjct: 61 SVLRRWRAAGRNMPVLILTARAAWHEKVAGMDAGADDYLAKPFHMEELLARLRALLRRLG 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + ++ + + GPI + + V G+ L E ++L LM +G+ +++T++ IY Sbjct: 121 EHASAQWQCGPIWLDTRQARVLVDGQPLTLTSHEFKLLSLLMQRKGQVLSRTELSEHIY- 179 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D + N +E + +LRKKL +++ R LGY + Sbjct: 180 PHDSDRDSNTIEVFVGRLRKKL----PPGSIETVRGLGYRL 216 >gi|229190642|ref|ZP_04317638.1| Sensor histidine kinase [Bacillus cereus ATCC 10876] gi|228592775|gb|EEK50598.1| Sensor histidine kinase [Bacillus cereus ATCC 10876] Length = 231 Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 43/230 (18%), Positives = 83/230 (36%), Gaps = 12/230 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD + + ++G ++ + + D+ ++ L Sbjct: 5 ILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQKLYTYEVDLMILDIM--MPKRNGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARVA 113 E+ + +R ++ VP++ +S + +G DD + KP + E + Sbjct: 63 EVCQEVRENNTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSF 122 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 K + + + +V GE L E IL L +N G+ + +I Sbjct: 123 QNATSQKNEDGIIRIRSVEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEI 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDW 222 F ++ D V HIS LR KL G + + +GY I+ Sbjct: 183 FERVWNE-DGYGSNKTVMVHISNLRDKLETVINGEKFIHTVWGVGYKIEK 231 >gi|167745694|ref|ZP_02417821.1| hypothetical protein ANACAC_00386 [Anaerostipes caccae DSM 14662] gi|317472712|ref|ZP_07932026.1| response regulator receiver domain-containing protein [Anaerostipes sp. 3_2_56FAA] gi|167655006|gb|EDR99135.1| hypothetical protein ANACAC_00386 [Anaerostipes caccae DSM 14662] gi|316899790|gb|EFV21790.1| response regulator receiver domain-containing protein [Anaerostipes sp. 3_2_56FAA] Length = 225 Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 45/222 (20%), Positives = 95/222 (42%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + ++ G + E + S + + + ++ Sbjct: 6 ILVVDDESRMRKLVKDFLNRAGYQVLEAGDGEEAVDVFFSTK-GIDLLVLDVMMPRMDGW 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120 E+ R IR S+VP+I ++ L FD GVD+ ++KP + ++AR+ AI R + Sbjct: 65 EVVREIRKVSEVPIIMLTAKDQENDELQGFDLGVDEYISKPFSPKILVARIEAILRRTRQ 124 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + G I + + + L +E +L Y M N G+ + + I + ++ Sbjct: 125 QDGEVLKAGGIVLDEAAHMVTIDDKSIDLSFKEFELLSYFMKNEGRALTRENILNQVW-N 183 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D + +++H+ KLR K+ +K + + +GY + Sbjct: 184 YDYFGDARTIDTHVKKLRNKMGSKGA--YIRTIWGMGYKFEV 223 >gi|154244330|ref|YP_001415288.1| two component transcriptional regulator [Xanthobacter autotrophicus Py2] gi|154158415|gb|ABS65631.1| two component transcriptional regulator, winged helix family [Xanthobacter autotrophicus Py2] Length = 238 Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 45/229 (19%), Positives = 90/229 (39%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D ++ G +G + + L ++ R D+ ++ L GE L Sbjct: 6 LLLVEDDREIRSLLADFLGREGYGVLAAEDGAAMDRLLATTRPDLVVLDLML--PGEDGL 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-------- 113 + R +RA S +P++ ++ + + G DD + KP + RE+LAR+ Sbjct: 64 SICRRLRARSGLPILMLTAKADDVDRIVGLEMGADDYLVKPFNPRELLARIRAVLRRADG 123 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 A+ + S A G + +GE L E +L + + +++ Q+ Sbjct: 124 AMPQPQFQSRRVAFAGFVADLDARSVGCAEGEALDLTSAEFELLACFLERPKRVLSRDQL 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL--RNKLGFDPVDSKRFLGYSI 220 G + ++ +S+LR+KL + + R GY Sbjct: 184 LDWTRGRS-ADPFDRTIDVSVSRLRRKLVAAAPEAALLIKTVRNGGYLF 231 >gi|306833114|ref|ZP_07466244.1| DNA-binding response regulator [Streptococcus bovis ATCC 700338] gi|304424688|gb|EFM27824.1| DNA-binding response regulator [Streptococcus bovis ATCC 700338] Length = 218 Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 49/220 (22%), Positives = 97/220 (44%), Gaps = 6/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++++G D + L+ + +++ + + L Sbjct: 3 ILIVEDEDMIREGISDYLTDCSYETIQAADGQEA--LEKFSSYEIALVLLDIQMPKLSGL 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ IR SQVP++ ++ + + + F S D + KP + RV AI++R Sbjct: 61 EVLAEIRKTSQVPVLMLTAFQDEEYKMGAFASLADGYLEKPFSLSLLKVRVDAIFKRYYD 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 RV + + GE + +E IL+YL+ N + + ++QI A++ Sbjct: 121 KGRVFIYKDTRVDFESYSASLAGEEVAINAKELEILDYLVKNERRVLTRSQIIDAVWKAT 180 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 DE E V++ +I LRKKL D + + R +GY ++ Sbjct: 181 DEVPFERVIDVYIKGLRKKL----HLDCIHTVRNVGYKLE 216 >gi|167755460|ref|ZP_02427587.1| hypothetical protein CLORAM_00974 [Clostridium ramosum DSM 1402] gi|237733688|ref|ZP_04564169.1| conserved hypothetical protein [Mollicutes bacterium D7] gi|167704399|gb|EDS18978.1| hypothetical protein CLORAM_00974 [Clostridium ramosum DSM 1402] gi|229383286|gb|EEO33377.1| conserved hypothetical protein [Coprobacillus sp. D7] Length = 230 Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 39/229 (17%), Positives = 84/229 (36%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D ++ + F + D++ ++ Sbjct: 5 ILVVDDEQSIADLVELYLQNESYQVFKFYHGQEALDSLKKNHYDLAILDVM--MPDLDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH--------REILARVA 113 L + IR P+I ++ + ++ G DD + KP + ++ Sbjct: 63 SLLKKIREDYFFPVIMLTAKNNDMDKINGLTLGADDYLTKPFNPLELAARVKTQLRRYTR 122 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 V+ + + + +D + + L E IL YL + RG V ++ Sbjct: 123 YNTNEPAVNQQIYDFNGLMINNDNHKCTLYDQPLNLTPIEFSILWYLCSKRGSVVTSEEL 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221 F A++ N V +H+++LR+K+ N V + +GY+I+ Sbjct: 183 FEAVWQEKYLD-NNNTVMAHVARLREKMNENARKPKFVKTVWGVGYTIE 230 >gi|293377150|ref|ZP_06623359.1| putative regulatory protein VanR [Enterococcus faecium PC4.1] gi|292644239|gb|EFF62340.1| putative regulatory protein VanR [Enterococcus faecium PC4.1] Length = 226 Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 46/224 (20%), Positives = 86/224 (38%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + A + S+ S D+ ++ L L Sbjct: 3 ILIVDDEEKILEIIDAYLVANHYSVYKAISGAMALEKFEKNNPDLVVLDLML--PDTDGL 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R IR S VP+I ++ L G DD + KP +E++AR+ + RR + Sbjct: 61 TVCRKIREISNVPIIMLTAKSDEDDILTGLKLGADDYMIKPFSPKELVARIQTVLRRTET 120 Query: 122 SNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 +N + V+ D R + L E IL LM+ K +++ + + Sbjct: 121 LSNPNKLSSNNKELIVYPDSRQVYLHQVELNLTPTEFDILHALMSTPNKVFSRSDLIEKV 180 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 G+ + + ++SHI LR K+ + + + GY Sbjct: 181 KGI-EFDGLDRSIDSHIKNLRHKIENDAKSPMYILTVHGTGYRF 223 >gi|229175730|ref|ZP_04303236.1| Two-component response regulator vanRB [Bacillus cereus MM3] gi|228607681|gb|EEK64997.1| Two-component response regulator vanRB [Bacillus cereus MM3] Length = 216 Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 45/221 (20%), Positives = 97/221 (43%), Gaps = 11/221 (4%) Query: 5 IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64 I+D +++ +++ + L D+ ++ L + Sbjct: 2 IEDNPDIQELIREFLMAQNFTVDVVGAGTEGILLFQKNSYDLVLLDVML--PDIDGYSIC 59 Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYRRLK 120 +I+R S VP+I ++ + ++ + F+ G+DD + KP H+ + RV + Sbjct: 60 KIMRGQSDVPIIMLTGLHNEESEIKGFELGIDDYITKPFHYTVFIKRVEAVLRRAATKEA 119 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + + + S V G L +E IL L+ NRGK ++++ + + ++G Sbjct: 120 EAATILQFHELMLNSTAYAAYVHGNQIELTTKEFEILYTLLQNRGKVLSRSDLLNKVWG- 178 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ + V+++HI LRKKL G + + + +GY I+ Sbjct: 179 YEHYGDVRVIDTHIKNLRKKL----GIPYIKTVKGIGYKIE 215 >gi|226311091|ref|YP_002770985.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226094039|dbj|BAH42481.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 255 Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 42/223 (18%), Positives = 88/223 (39%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + A + +E + E E S + ++ L G Sbjct: 32 ILIVEDELPISRVLKAYLEKNNFRVEQAFNGEEAERKFDSHSPALVLLDVML--PGRSGW 89 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 + IRA S P+I ++ + L + G DD + KP E++ARV ++ Sbjct: 90 SILEYIRAKSSCPVIMLTALGQIDNKLAGLNKGADDYITKPFIADEVVARVHAVLRRSKQ 149 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 L N+ + G ++V + G ++ + +L + + + Q+ ++ Sbjct: 150 LIEGNHVKQFGSLKVDFKAYSVMLHGIELAFTPKDLCLFLFLAQYKNQTFTREQLIEQVW 209 Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 G+ D + V+ I ++R+ L N + + R LGY + Sbjct: 210 GM-DYEGSDRAVDLAIKRIRRSLENWPTSEGEIRTYRGLGYKL 251 >gi|261344617|ref|ZP_05972261.1| transcriptional activator protein Irlr [Providencia rustigianii DSM 4541] gi|282567532|gb|EFB73067.1| transcriptional activator protein Irlr [Providencia rustigianii DSM 4541] Length = 223 Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 38/220 (17%), Positives = 97/220 (44%), Gaps = 3/220 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D + + G ++ + + ++ L G Sbjct: 3 ILLIEDHLKTQGWVKNGLEEAGFLVDVATDGRDGLYFALENNYQLVILDIML--PGMNGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ +++R +P+I ++ ++ + + G +D + KP E+LARV + + Sbjct: 61 DILKVLRTSKNIPVICLTARDAVDDRIKGLELGANDYLVKPFSFSELLARVKNQLKVHQP 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 ++ +++ + E G+ L R+E +L + + + + + +T I S ++G+ Sbjct: 121 TSTNMTIADLKIDLVRHEVERGGQKIILTRQEFSLLLFFVLHCDEILPRTLIASEVWGI- 179 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D + N+++ I +LRKK+ + +++ R +GY ++ Sbjct: 180 DFDSDTNIIDVAIRRLRKKIDDGFDVKLIETIRGMGYRLN 219 >gi|307150227|ref|YP_003885611.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 7822] gi|306980455|gb|ADN12336.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7822] Length = 246 Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 46/228 (20%), Positives = 89/228 (39%), Gaps = 9/228 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++IDD + + G + + L + D+ ++ L G V Sbjct: 4 ILVIDDDPAISELVSINLEMAGYDVNQAEDGIKGQALAVQLQPDLIMLDLMLPKVDGFTV 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R S +P++ ++ Q ++ F++G DD + KP E+LARV A+ RR Sbjct: 64 CQRLRRDERTSDIPVLMLTALGQTQDKVEGFNAGADDYLTKPFEVEEMLARVRALLRRTD 123 Query: 121 VSNNRAETGPIRVF------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 A+ I + + + + L E +L L+ G+ V+ + I Sbjct: 124 RIPQAAKHSEILNYGPLTLVPERFEAIWFNKTVKLTHLEFELLHCLLQRHGQTVSPSDIL 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 ++G +D + + HI LR KL + + + GY ++ Sbjct: 184 KEVWG-YDPDDDIETIRVHIRHLRTKLEPDPRHPRYIKTVYGAGYCLE 230 >gi|228969212|ref|ZP_04130100.1| Two-component response regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|228790479|gb|EEM38192.1| Two-component response regulator [Bacillus thuringiensis serovar sotto str. T04001] Length = 233 Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 51/227 (22%), Positives = 93/227 (40%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ ++G+ + L D+ ++ + Sbjct: 10 ILIVDDDKEIRNLISVYLENEGLKTQKAEDAIQALQLLEEKEFDLVILDIM--MPNMDGI 67 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E IR +P+I +S + SG DD ++KP + E++ARV + RR K Sbjct: 68 EACMKIREDRNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 127 Query: 122 SNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N E V +D R V+G+ L +E ILE L N+G ++ +I+ Sbjct: 128 YNTSVEHNKSILEIGDLTVNTDTRQVWVRGKETRLTPKEFAILELLARNKGIVLSVAKIY 187 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220 A++ +N V HI+K+R K+ + + +GY I Sbjct: 188 EAVWKEV-FYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGYKI 233 >gi|77359551|ref|YP_339126.1| transcriptional regulator [Pseudoalteromonas haloplanktis TAC125] gi|76874462|emb|CAI85683.1| phosphate regulon transcriptional regulatory protein phoB [Pseudoalteromonas haloplanktis TAC125] Length = 229 Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 41/223 (18%), Positives = 92/223 (41%), Gaps = 8/223 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD A +++ + + +G + D+ ++ L G ++ Sbjct: 6 LVVDDEAPIREMLVFVLEQNGFQAIEAEDYDSAIAAMVEPYPDMVLLDWML--PGGSGIQ 63 Query: 63 LPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 + + + + +P+I ++ + + + G DD V KP +E++AR+ A+ RR+ Sbjct: 64 IAKKFKQNEYTRAIPIIMLTARGEEEDKVRGLEVGADDYVTKPFSPKELMARIKAVIRRV 123 Query: 120 KVSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 ++ R+ G + E R+L + M + + ++ Q+ + Sbjct: 124 SPTSLEEAIDVHGLRLDPISHRVTSGGSELDMGPTEFRLLHFFMTHTERVYSREQLLDQV 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G + VE+ V+ HI +LRK + V + R GY Sbjct: 184 WGT-NVYVEDRTVDVHIRRLRKAISPLGHDRLVQTVRGAGYRF 225 >gi|332524805|ref|ZP_08400998.1| osmolarity response regulator [Rubrivivax benzoatilyticus JA2] gi|332108107|gb|EGJ09331.1| osmolarity response regulator [Rubrivivax benzoatilyticus JA2] Length = 244 Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 41/230 (17%), Positives = 82/230 (35%), Gaps = 14/230 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 V++DD A ++D +G + + + + D+ ++ L GE L Sbjct: 12 IVVVDDDARIRDLLRRYLSQEGFEVLLAEDAKALNRVLTRDTVDLIVLDLML--PGEDGL 69 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILAR 111 + R +R A+ P+I ++ + + G DD + KP + RE Sbjct: 70 SICRRLRAANDITPIIMLTAKVEDVDRIVGLEVGADDYLPKPFNPRELLARIHAVLRRRP 129 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 GP R GE L E +L+ L+ + + +++ Sbjct: 130 APEAPGAPSKEPQVVNFGPFEFDLSLRRLSKNGEQIALTTGEFSMLKALVRHPRQPLSRD 189 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++ G + + ++ IS+LRK L + + + +GY Sbjct: 190 KLAQLARGR-EFEPFDRSLDVQISRLRKMLEPDPAQPRYIQTVWGVGYVF 238 >gi|295105634|emb|CBL03178.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Faecalibacterium prausnitzii SL3/3] Length = 228 Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 50/225 (22%), Positives = 92/225 (40%), Gaps = 10/225 (4%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 M +++D A +++ +G ++GF S E +A ++ ++ L GE Sbjct: 1 MIYIVEDDASIRELEQYALQSNGYEVQGFESAEPFWQAMRAAEPELVILDVML--PGEDG 58 Query: 61 LELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVV--NKPIHHREILARVAAI 115 + + +R ++P+I ++ S T+ D G DD + I RVA Sbjct: 59 FSILKKLRNTPSLRKLPIIMVTAKSSELDTVRGLDCGADDYIAKPFGIMEFLSRVRVALR 118 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 +V + I++ + V L +E +L L+ N V + I Sbjct: 119 RSAPEVRPDVLVFHEIQLDNARHSVTVNSTPVELTYKEYCLLRLLLENTSLVVTRETILQ 178 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G D +VE V+ HI LRKKL + + + R +GY + Sbjct: 179 VVWGT-DISVESRTVDMHIRTLRKKLGDAG--RYICTVRKVGYKL 220 >gi|238923708|ref|YP_002937224.1| hypothetical protein EUBREC_1330 [Eubacterium rectale ATCC 33656] gi|238875383|gb|ACR75090.1| hypothetical protein EUBREC_1330 [Eubacterium rectale ATCC 33656] Length = 232 Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 46/232 (19%), Positives = 93/232 (40%), Gaps = 14/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D +++ L + G +E + E S + ++ + Sbjct: 4 LLIIEDDETIRNALRILLENQGYFIEEAHDGEEGLQKFDST---FDLLIIDIMMPNISGI 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR S VP++ ++ ++ +G DD + KP + E++AR+ A+ RR +V Sbjct: 61 EVCRRIREKSYVPILFLTAKSLETDKMEALSAGGDDYLVKPFSYVELIARIQALIRRCRV 120 Query: 122 SNN----------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 +N E + +++ + G L +E +IL L+++ K + Sbjct: 121 YDNADASDTTASSTIERCGLTLYTKCNNVSYDGRQLALTDKEYQILLLLISHPTKTFSTQ 180 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222 IF +++ N + HI LR KL + + GY + Sbjct: 181 NIFESVWNEPYTQFSNNTIMVHIKNLRNKLEAGCGCAHLIKTVWGKGYKFEE 232 >gi|228998532|ref|ZP_04158120.1| Response regulator [Bacillus mycoides Rock3-17] gi|229006008|ref|ZP_04163698.1| Response regulator [Bacillus mycoides Rock1-4] gi|228755276|gb|EEM04631.1| Response regulator [Bacillus mycoides Rock1-4] gi|228761257|gb|EEM10215.1| Response regulator [Bacillus mycoides Rock3-17] Length = 240 Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 35/225 (15%), Positives = 88/225 (39%), Gaps = 8/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +++DD + + + +G + + + + + D+ ++ ++ Sbjct: 13 ILIVDDEKEILNLLETVLKKEGFQHIYTYTTGAEGIRMCKRVQPDLIILD--IMLPDLDG 70 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR---EILARVAAIYR 117 + + IR + VP+ +S + G DD + KP + + + Sbjct: 71 YSVCQQIRQFTFVPIFFLSAKNEDLDKILGLSIGGDDYITKPFSPKEVAYKMKAFFRRNQ 130 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + + G IR+ + L +E IL +L+ N + +K +++ A+ Sbjct: 131 YQEKARIMYQFGDIRIDEAQGTVLKGDTLLSLTAKEFNILLFLIKNPNQIFSKARLYEAV 190 Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 +G +N++ H+ LR+K+ + + + R LGY ++ Sbjct: 191 WGET-YLGNDNIMMVHMRHLREKIEDNPSNPHYLVTVRGLGYKLN 234 >gi|229115399|ref|ZP_04244806.1| Two-component response regulator vanR [Bacillus cereus Rock1-3] gi|228668013|gb|EEL23448.1| Two-component response regulator vanR [Bacillus cereus Rock1-3] Length = 243 Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 43/228 (18%), Positives = 89/228 (39%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + ++ ++ E + ++ ++ ++ + Sbjct: 17 ILIVDDDLDIVQFINVNLTQEDFTVFSAHNGEEALEIINNNSIQLAILDIM--MPQMDGI 74 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL R IR +P++ +S S + F +G DD + KP E +ARV A RR Sbjct: 75 ELCRRIREKYSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 134 Query: 122 SNNRAETGPIR--------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 N A + + R ++ G+ + + E IL + A + + +I Sbjct: 135 FNQIAVQVMEKKINIKGLEIDEISRVVKIYGQTINVTKTEYDILHLMAAAKNRVFTIEEI 194 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + +++ N V HI++LR K+ + + +GY I Sbjct: 195 YESVWNERAYE-SNNTVMVHIARLRNKIEENPKEPRFIQNVWGVGYKI 241 >gi|255657556|ref|ZP_05402965.1| two-component response regulator [Clostridium difficile QCD-23m63] gi|296452769|ref|ZP_06894458.1| response regulator [Clostridium difficile NAP08] gi|296879979|ref|ZP_06903949.1| response regulator [Clostridium difficile NAP07] gi|296258388|gb|EFH05294.1| response regulator [Clostridium difficile NAP08] gi|296428956|gb|EFH14833.1| response regulator [Clostridium difficile NAP07] Length = 230 Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 39/229 (17%), Positives = 84/229 (36%), Gaps = 11/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++D + G ++ + + + ++ + Sbjct: 5 ILVVDDEKEIRDLIEIYLLNSGYNVIKAEDGKEALDILKKENIHLMVLDIM--MPKMDGI 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-------REILARVAA 114 E+ R +R +P++ +S + +G DD + KP + + ++ R Sbjct: 63 EVCRKVRESLNIPILMLSAKSEDMDKIQGIMTGADDYLTKPFNPLELTVRVKSLIRRAYY 122 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + E G + + + V G L RE IL L N+G+ + +IF Sbjct: 123 FSGANNEDKDVIEVGAVIIDKEKHSVTVAGNDIILTSREFDILYLLANNKGRVYSTEEIF 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 ++ N V H+S++R K+ G + + +GY I+ Sbjct: 183 EKVWKEK-YYQSNNTVMVHMSRIRDKIEKYTDGEKIIHTVWGVGYKIEK 230 >gi|212711730|ref|ZP_03319858.1| hypothetical protein PROVALCAL_02805 [Providencia alcalifaciens DSM 30120] gi|212685832|gb|EEB45360.1| hypothetical protein PROVALCAL_02805 [Providencia alcalifaciens DSM 30120] Length = 223 Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 40/220 (18%), Positives = 98/220 (44%), Gaps = 3/220 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D + + G ++ + + + ++ L G Sbjct: 3 ILLIEDHLKTQGWVKNGLEEAGFLVDVADDGRDGLYFALENNYQLVILDIML--PGMNGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ +I+R +P+I ++ ++ + + G +D + KP E+LARV + + Sbjct: 61 EILKILRTAKNIPVICLTARDAVDDRIKGLELGANDYLVKPFSFSELLARVKNQLKVNQP 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + +++ + E G+ L R+E +L + + + + + +T I S ++G+ Sbjct: 121 VSTTMTIADLKIDLTRHEVERGGQKIILTRQEFSLLLFFVLHCDEILPRTLIASEVWGI- 179 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D + N+++ I +LRKK+ ++ +++ R +GY ++ Sbjct: 180 DFDSDTNIIDVAIRRLRKKIDDEFEIKLIETIRGMGYRLN 219 >gi|164520392|gb|ABY60251.1| PhoP [Listeria monocytogenes] Length = 233 Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 47/232 (20%), Positives = 95/232 (40%), Gaps = 16/232 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD A + G + L S + D+ ++ L +E Sbjct: 2 LVVDDEASIVTLLQFNIEKAGFGVVTAEDGRTGYELALSEKPDLIVLDLML--PEMDGIE 59 Query: 63 LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + +R VP++ ++ + + G DD + KP RE++AR+ AI RR + Sbjct: 60 VTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRRTEG 119 Query: 122 SNNRAETGPIR-----------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 E + D + +Q ++ L +E +L +L +RGK ++ Sbjct: 120 KAEIIEEITEDSEATILIGDLKILPDSYEVYLQDDLLDLTPKEFELLLFLANHRGKVFSR 179 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 Q+ ++ +D E +V+ H+S LR K+ + + + R GY ++ Sbjct: 180 DQLLDTVW-NYDYVGETRIVDVHVSHLRDKIELDTKQPKYIKTIRGFGYKME 230 >gi|119897266|ref|YP_932479.1| two-component response regulatory protein [Azoarcus sp. BH72] gi|119669679|emb|CAL93592.1| probable two-component response regulatory protein [Azoarcus sp. BH72] Length = 228 Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 55/221 (24%), Positives = 102/221 (46%), Gaps = 6/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 +L +D ++ DG + G +++ + + +S D+ ++ L G +V Sbjct: 3 ILLAEDDPVIADGIVRALKRGGYAVDHVGNGAEADTAVASQPFDLLILDLGLPRLPGIEV 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L+ R S +P++ ++ ++ + D+G DD + KP E+ ARV A+ RR Sbjct: 63 LKRLRA--RKSALPVLILTAQDGVEDRVRGLDAGADDYLTKPFALPELEARVRALTRRGT 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 E G + R ++ G+V L RE +LE + G+ V+K Q+ + G Sbjct: 121 GQPRCIEVGNLSYDQADRVVKICGQVVELSAREIGLLEVFILRVGRLVSKDQLVDHLCG- 179 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + E V N +E ++ +LRKKL + + R LGY ++ Sbjct: 180 WGEEVSSNAIEVYVHRLRKKLEASG--VRIVTVRGLGYCLE 218 >gi|225182095|ref|ZP_03735524.1| two component transcriptional regulator, winged helix family [Dethiobacter alkaliphilus AHT 1] gi|225167214|gb|EEG76036.1| two component transcriptional regulator, winged helix family [Dethiobacter alkaliphilus AHT 1] Length = 226 Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 43/222 (19%), Positives = 86/222 (38%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + G +G ++E +S + + ++ L Sbjct: 4 ILLVEDDKTIAMGIEYALTQEGFTVEVCHSAGYARERWGKGGFSLVILDVSL--PDGNGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL R S P+I ++ + D G DD + KP RE+++R+ ++ RR Sbjct: 62 ELCREFGGQSDTPVIFLTACDEEVNVVMGLDMGADDYITKPFRVRELVSRIKSVLRRYNK 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFP---LPRRERRILEYLMANRGKRVAKTQIFSAIY 178 S + + L E R+L L ++G + + QI ++ Sbjct: 122 SMPNNAEINLGKLIINTAEAKVYKDGEAVLLTALEYRLLLTLANSKGLTLTRNQILEGLW 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYS 219 + + V +N + +I +LR+K+ + + + R LGY Sbjct: 182 DVAGDFVNDNTLTVYIKRLREKIEDDPQQPQIIKTVRGLGYK 223 >gi|17229920|ref|NP_486468.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] gi|17131520|dbj|BAB74127.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120] Length = 1627 Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 50/222 (22%), Positives = 92/222 (41%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D L A+ + ++E + L + D+ ++ L + Sbjct: 3 ILIVEDDELNAYALTAVLTNQNYAVEVGSDGITAWELIQTYDYDLILLDVML--PRLDGI 60 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L R IR+ Q+P++ ++ S D+G DD V KP E++ARV A+ RR Sbjct: 61 SLCRQIRSSGRQMPILLLTGCDSSHEKAIGLDAGADDYVVKPFDEEELVARVRALLRRGV 120 Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + ++ + + L +E +LE + + + + + I I+ Sbjct: 121 TTAQPILEWGNLQLDPSSCEVRYNQNLLSLTPKEYALLELFLRHSRRVFSCSMILEHIWS 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220 D EE V +HI LR KLRN D V++ +GY + Sbjct: 181 YEDTPGEE-AVRTHIKGLRMKLRNAGAPGDLVETVYGIGYRL 221 Score = 73.2 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 13/95 (13%), Positives = 32/95 (33%), Gaps = 1/95 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61 ++ DD L++ +L G + + + S+ DV ++ + G + + Sbjct: 1380 LVCDDDPLIRTELQSLLEQGGYRVFTVATGQEAIASASTQHPDVIVLDLLMPGMNGWETM 1439 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVD 96 + + +P++ S Y D Sbjct: 1440 AMLKESTETKHIPIVICSVYKPTSNHQPSRDFVDW 1474 Score = 55.4 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 9/80 (11%), Positives = 30/80 (37%), Gaps = 1/80 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVL 61 + +DD + L G+ + + D+ ++ + G ++ Sbjct: 382 LAVDDDPQILAILQTLLHPWGLQVITLDDPRQFWETLRDVNPDLLILDVEMPYTNGIELC 441 Query: 62 ELPRIIRAHSQVPLIGISDY 81 ++ R S++P++ ++ + Sbjct: 442 QVVRNDPQWSELPILFLTVH 461 Score = 43.5 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 5/40 (12%), Positives = 15/40 (37%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS 41 ++++D A + + ++ LF + + L Sbjct: 1501 ILIVEDDADLAELFVTLFERHDIETFSAKTGREAIHLSQE 1540 >gi|300742302|ref|ZP_07072323.1| DNA-binding response regulator PhoP [Rothia dentocariosa M567] gi|300381487|gb|EFJ78049.1| DNA-binding response regulator PhoP [Rothia dentocariosa M567] Length = 240 Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 50/226 (22%), Positives = 96/226 (42%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + G + + + + D+ ++ G Sbjct: 13 LLVVDDEFNILELLATSLRFAGFEVVTAGNGREAIEKAENEQPDLIVLDVM--MPGMDGF 70 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +R A P++ ++ + + + +G DD V KP E++AR+ AI RR + Sbjct: 71 EVTRRLRDAGRTYPVLFLTAKDATEDKVAGLGAGGDDYVTKPFSLDEVIARIRAILRRSR 130 Query: 121 VSNNRAETGPIRVF----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + D + + E L E +L YLM N + ++K QI Sbjct: 131 NAQEEDDAILRVDDLSLNIDTHEVFLGDEEIDLSPTEFNLLHYLMLNANRVLSKAQILDH 190 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYSI 220 ++ +D + ++VES+IS LR+K+ N + +KR +GY I Sbjct: 191 VW-EYDFNGDSSIVESYISYLRRKIDNNREGHEPLIHTKRGVGYMI 235 >gi|239981886|ref|ZP_04704410.1| two-component system response regulator [Streptomyces albus J1074] gi|291453741|ref|ZP_06593131.1| two-component system response regulator [Streptomyces albus J1074] gi|291356690|gb|EFE83592.1| two-component system response regulator [Streptomyces albus J1074] Length = 225 Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 43/219 (19%), Positives = 91/219 (41%), Gaps = 5/219 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + + +G + + D+ ++ L G +E Sbjct: 6 LVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFRETKPDLVLLDQML--PGRDGIE 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLKV 121 + R+IRA S VP++ ++ + +SG DD + KP +E++AR+ A R + Sbjct: 64 VCRLIRAESGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRRSEEP 123 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + G + + G + G+ L E +L L + + + ++G + Sbjct: 124 APEQLTIGDLVIDVAGHSVKRDGQSIALTPLEFDLLVALARKPWQVFTREVLLEQVWG-Y 182 Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219 A + +V H+ +LR K+ + V + R +GY Sbjct: 183 RHAADTRLVNVHVQRLRSKVERDPERPEIVVTVRGVGYK 221 >gi|228909410|ref|ZP_04073235.1| Two-component response regulator [Bacillus thuringiensis IBL 200] gi|228850187|gb|EEM95016.1| Two-component response regulator [Bacillus thuringiensis IBL 200] Length = 225 Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 53/225 (23%), Positives = 97/225 (43%), Gaps = 10/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L++D +++ F ++G + + L + D+ ++ L Sbjct: 6 LLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELFAEHEIDLIMLDIML--PEIDGWS 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120 + R IR S VP+I ++ TL F+ G D+ V KP + ++AR + +R Sbjct: 64 VCRRIRKESAVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGA 123 Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 N I V R V GE L +E +L YLM N+G +++ + + Sbjct: 124 VGVAEENAMSLAGIEVNRLSRTVLVDGEEIILTHKEFELLVYLMENKGIVLSRQHLLDQL 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +G +D ++ V++HI KLR KL +K + + +GY + Sbjct: 184 WG-YDYYGDDRTVDTHIKKLRNKLGDK--AKHISTVIRVGYKFEE 225 >gi|229133392|ref|ZP_04262220.1| Two-component response regulator [Bacillus cereus BDRD-ST196] gi|228650065|gb|EEL06072.1| Two-component response regulator [Bacillus cereus BDRD-ST196] Length = 233 Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 49/227 (21%), Positives = 94/227 (41%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ ++G+ + L + D+ ++ + Sbjct: 10 ILIVDDDKEIRNLISVYLENEGLKTQKAEDAIEALKLLEEKKFDLIILDVM--MPNMDGI 67 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ IR +P+I +S + SG DD ++KP + E++ARV + RR K Sbjct: 68 EVCMKIREERNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 127 Query: 122 SNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N + V +D R V+G L +E IL+ L N+G ++ +I+ Sbjct: 128 YNMHTDNNKSILEIGDLTVNTDTRQVWVRGTEVRLTPKEFDILKLLARNKGIVLSVAKIY 187 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220 A++ +N V HI+K+R K+ + + +GY I Sbjct: 188 EAVW-KDAFYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGYKI 233 >gi|156740441|ref|YP_001430570.1| two component transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156231769|gb|ABU56552.1| two component transcriptional regulator, winged helix family [Roseiflexus castenholzii DSM 13941] Length = 245 Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 43/225 (19%), Positives = 82/225 (36%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD + D + + ++ DV ++ Sbjct: 21 ILIADDDPSIGTLIQVTLKDPRYEIVAVKNGLEALKAFDESKFDVVILDVM--MPYVDGF 78 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAIY 116 E + IR S VP+I ++ + F+ G DD + KP R Sbjct: 79 EACQRIRERSDVPIIILTARDGTDDIVHGFELGADDYITKPFKTAELIARVDAILRRVEG 138 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + +V+ G I + V+G+ L E +L +L AN G + +F Sbjct: 139 YKHRVAPPIVRVGEIEIDEPRHRVTVRGKEVNLTPMEFELLYFLAANAGHVFDRETLFRE 198 Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++G +D E N+V+ + +LR+K+ + + R +GY + Sbjct: 199 VWG-YDYVGETNLVDVCVRRLREKVESEPSRPRLILTVRGVGYKM 242 >gi|326381575|ref|ZP_08203269.1| putative OmpR family two-component response regulator [Gordonia neofelifaecis NRRL B-59395] gi|326199822|gb|EGD57002.1| putative OmpR family two-component response regulator [Gordonia neofelifaecis NRRL B-59395] Length = 238 Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 43/229 (18%), Positives = 84/229 (36%), Gaps = 14/229 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D A + + DG + L DV ++ L G +E Sbjct: 9 MVVEDEAALASLVASYLERDGFEVTVTGDGADAVALARKVDPDVVVLDLGL--PGLDGVE 66 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH----------REILARV 112 + R +R S ++ ++ TL G DD + KP Sbjct: 67 VCRRLRTFSDAYVVMLTARADEVDTLVGLSVGADDYITKPFSPRELSARIQARMRRPRTG 126 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + G + + GR+ V GE L R E +L L + G ++ + Sbjct: 127 FTGEQTPVTRAPDRVFGDLSIDVLGREVWVSGEPVHLTRTEFDLLAALSSAPGTVFSRAR 186 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220 + ++G + ++++V+ HI +R+KL + V + R +GY + Sbjct: 187 LIDTVWG-PEWIGDDHLVDVHIGHVRRKLGDDAAQGRYVRTVRGVGYRM 234 >gi|300691227|ref|YP_003752222.1| DNA-binding response regulator in two-component regulatory system with phoR [Ralstonia solanacearum PSI07] gi|299078287|emb|CBJ50935.1| DNA-binding response regulator in two-component regulatory system with phoR [Ralstonia solanacearum PSI07] Length = 237 Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 45/231 (19%), Positives = 84/231 (36%), Gaps = 10/231 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++++D + + G + E L S D+ ++ L G G Sbjct: 5 ILVVEDEPAIAELIAVNLQHAGHYPIRAYNAEQALSLMSDVLPDLVLLDWMLPGKSGVMF 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112 + R Q+P+I ++ Q + D+G DD V KP +E + R Sbjct: 65 AKELRANERTRQIPIIMLTARSEEQDKIMGLDAGADDYVTKPFSPKELLARIKAVLRRRA 124 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + N + L E R+L +LM + + +++Q Sbjct: 125 PQLTDDVVAINGLRLDPATHRVTAMNGESENPIKLDLGPTEFRLLHFLMTHPERVHSRSQ 184 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 + ++G VEE V+ HI +LR L + +++ R GY + N Sbjct: 185 LLDQVWGDH-VFVEERTVDVHIKRLRAALAPGGYSNMIETVRGSGYRLARN 234 >gi|160942928|ref|ZP_02090167.1| hypothetical protein FAEPRAM212_00405 [Faecalibacterium prausnitzii M21/2] gi|158445829|gb|EDP22832.1| hypothetical protein FAEPRAM212_00405 [Faecalibacterium prausnitzii M21/2] gi|295103906|emb|CBL01450.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Faecalibacterium prausnitzii SL3/3] Length = 228 Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 47/225 (20%), Positives = 88/225 (39%), Gaps = 10/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ G E S D+ ++ + Sbjct: 4 ILIVDDEPRIRELIHEHLQYAGYICEEAGDGSAALAQLSGGGFDLVILDLM--MPFMDGM 61 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 R +RA P+I ++ L +SG DD V KP RE++ARV A+ R Sbjct: 62 TCLREMRARHINTPVIILTARGEEYDKLAGLESGADDYVVKPFSPRELVARVRAVLNRTM 121 Query: 121 VSN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + G + + + V GE L +E +L +L +N+G +++ +I Sbjct: 122 PRPTEAADTMTFGELTIDTASHTVRVSGEEVALTPKEFDLLVFLASNKGIALSREKILQK 181 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ +D E+ V++H+ LR L + + +GY D Sbjct: 182 VW-NYDYFGEDRTVDTHVKMLRGHLGK--CRSYIATVWGIGYKFD 223 >gi|110802073|ref|YP_699510.1| DNA-binding response regulator [Clostridium perfringens SM101] gi|110682574|gb|ABG85944.1| DNA-binding response regulator [Clostridium perfringens SM101] Length = 227 Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 39/225 (17%), Positives = 90/225 (40%), Gaps = 10/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D ++ F + + S E + D++ ++ L G Sbjct: 3 ILLVEDEESIRGFLRINFQRENFQVIECESGEEGVRKALIEKPDIAILDVML--PGMNGF 60 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR--- 117 E+ + +R ++ +I ++ + G DD V KP + EI RV A+ R Sbjct: 61 EVCQKLRESFPRMGIIMLTAKGEDMDKIMGLQFGADDYVLKPFNPLEITLRVKALIRRLE 120 Query: 118 --RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + +N+ E ++ + + + +E +++ M N GK + ++ + Sbjct: 121 GINEEDNNDCIEVDNFKLDLYSQSLYKENVEIDVTPKEFLLMKIFMQNPGKAFTRDELLN 180 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219 ++G+ D + +V+ +I +LR K+ +++ GY Sbjct: 181 LVWGI-DFFGDPKIVDVNIRRLRSKIEENSSKPKYIETVWGTGYR 224 >gi|39998037|ref|NP_953988.1| DNA-binding heavy metal response regulator [Geobacter sulfurreducens PCA] gi|39984982|gb|AAR36338.1| DNA-binding heavy metal response regulator [Geobacter sulfurreducens PCA] gi|298506979|gb|ADI85702.1| winged-helix heavy metal transcriptional response regulator [Geobacter sulfurreducens KN400] Length = 223 Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 43/221 (19%), Positives = 93/221 (42%), Gaps = 5/221 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++I+D F ++G + + S + L + D+ ++ L G E Sbjct: 4 LIIEDEKKAAAYLQKGFAENGFTADTAASGDDGLHLARTENYDLIILDIML--PGRDGWE 61 Query: 63 LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI-LARVAAIYRRLK 120 + +R S+VP+I +S ++ + + G DD + KP E+ + R Sbjct: 62 VLEELRKEGSEVPVIYLSARDAVHDRVRGLELGADDYLVKPFAFSELLARARTILRRGPS 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 R + + G +G L +E +L L+ +G+ +++T I ++G+ Sbjct: 122 RQPERLRADDLEMDLVGHKARREGRPIDLTAKEFILLSLLLRRKGEVLSRTLIAEQVWGI 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + N+V+ I +LR+K+ + + + R GY ++ Sbjct: 182 -NFDSDTNIVDVAIRRLRRKVDDPFERKLIHTVRGAGYVLE 221 >gi|94311118|ref|YP_584328.1| two component transcriptional regulator [Cupriavidus metallidurans CH34] gi|93354970|gb|ABF09059.1| DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) [Cupriavidus metallidurans CH34] Length = 235 Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 44/226 (19%), Positives = 83/226 (36%), Gaps = 8/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++++D + + G + E L S D+ ++ L G G Sbjct: 5 ILVVEDEPAIAELIAVNLQHAGHYPIRAYNAEQALSLMSDVLPDLVLLDWMLPGKSGATF 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAA 114 + R Q+P+I ++ Q + ++G DD V KP +E+ + R A Sbjct: 65 AKELRNNDRTKQIPIIMLTARSEEQDKVMGLEAGADDYVTKPFSPKELLARIKAVLRRRA 124 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 V + L E R+L +LM + + +++Q+ Sbjct: 125 PQLTDDVVAINGLRLDPATHRVTGQDDGGPIKLDLGPTEFRLLHFLMTHPERVHSRSQLL 184 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G VEE V+ HI +LR L + +++ R GY + Sbjct: 185 DQVWGDH-VFVEERTVDVHIKRLRAALTPGGYSNMIETVRGSGYRL 229 >gi|328950115|ref|YP_004367450.1| two component transcriptional regulator, winged helix family [Marinithermus hydrothermalis DSM 14884] gi|328450439|gb|AEB11340.1| two component transcriptional regulator, winged helix family [Marinithermus hydrothermalis DSM 14884] Length = 224 Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 45/220 (20%), Positives = 90/220 (40%), Gaps = 6/220 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVL 61 +L++D V+ G G ++ + DV ++ L G + L Sbjct: 5 LLVEDEESVRVGLRLGLRQAGFTVLEAATAAEGWAQLEGC--DVVVLDWMLPDEPGIRFL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E R +P++ ++ + ++ G DD + KP E++AR+ A+ RR Sbjct: 63 ERLRRTPRFEGLPVLMLTARAAEADRVEGLTRGADDYLVKPCSLPELVARLKALLRRAGR 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 G + + + V+G L RRE +L +L + G+ + ++ ++G Sbjct: 123 RRVVERPGL-VLDLERMEVRVEGRPVELTRREFDLLAHLARHAGRVFTREELLEQVWG-P 180 Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 D V+ H+++LR+KL + +++ R GY Sbjct: 181 DFFGTARTVDQHVAQLREKLGDAPNAPRFIETVRGKGYRF 220 >gi|306834322|ref|ZP_07467439.1| phosphate regulon response regulator [Streptococcus bovis ATCC 700338] gi|304423495|gb|EFM26644.1| phosphate regulon response regulator [Streptococcus bovis ATCC 700338] Length = 225 Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 42/225 (18%), Positives = 84/225 (37%), Gaps = 6/225 (2%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEK 59 M ++D +++ + G +GF + + ++ L G Sbjct: 1 MIYCVEDDDDIRELMLYTLRTAGFEAQGFPDSVLFWKAMEEEQPKLILLDIMLPVDDGLT 60 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +L+ R +P+I + + + D G DD + KP E+++R+ A+ RR Sbjct: 61 ILKSLRSNGMTKDIPVIMTTAKGTEFDKVKGLDLGADDYLVKPFGMMEMISRIKAVLRRT 120 Query: 120 KVSNNRAETGPIR--VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + G+ L +E +L LM N G+ + ++ + Sbjct: 121 SNQEQETHLTIKNLSLDAKNYTVRNNGQKIELTLKEFDLLSLLMLNPGRVFTRQELLDKV 180 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +G E V+ HI LR KL + + + R +GY ++ Sbjct: 181 WGEH-FIGETRTVDVHIGTLRMKLGDASH--LIKTVRGVGYRLEV 222 >gi|297194827|ref|ZP_06912225.1| two component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|197720711|gb|EDY64619.1| two component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 219 Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 48/222 (21%), Positives = 92/222 (41%), Gaps = 10/222 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ +D + +G + + S R D+ ++ L G Sbjct: 4 ILIAEDEERIASFVEKGLRSNGFTTTVAADGDTALDHALSGRFDLMLLDIGL--PGRDGF 61 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R +R P++ ++ S++ T+ + G DD + KP E+LARV R Sbjct: 62 TVLRELRESRVTLPVVVLTARDSVRDTVAGLEGGADDWMTKPFRFEELLARVRLRLRTAA 121 Query: 121 VSNNRAETGPIR--VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + R V G L RE +LE + + G+ +++ QI S ++ Sbjct: 122 RAPEVTVLRSGDLGLDLRTRRARVSGRTVDLTAREFVLLELFLRHPGQVLSREQILSHVW 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G +D N+V+ ++ LRKKL G + +++ R +GY + Sbjct: 182 G-YDFDPGSNIVDVYVRALRKKL----GAERLETVRGMGYRM 218 >gi|148266303|ref|YP_001233009.1| two component transcriptional regulator [Geobacter uraniireducens Rf4] gi|146399803|gb|ABQ28436.1| two component transcriptional regulator, winged helix family [Geobacter uraniireducens Rf4] Length = 224 Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 42/221 (19%), Positives = 91/221 (41%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D V ++ + + E + D+ ++ L + L Sbjct: 3 ILVVEDEKKVLSFIKRGLEEEQYEVLTASDGEEGLKMALDMPYDLIILDWML--PKQDGL 60 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + + +R P++ ++ S++ + DSG DD + KP E+LARV A+ RR + Sbjct: 61 SVLKELRNQKNATPVLMLTAKDSVEDIVAGLDSGSDDYLTKPFAFAELLARVRALLRRSE 120 Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 R+ + + L +E +LEY M N + + +T I ++ Sbjct: 121 QDRGAEIRFSDLRLDPVTHKVWRKDKEIDLTAKEYGLLEYFMRNPHEVLTRTMIAEHVWD 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + N+++ +++ LRKK+ + + R +GY + Sbjct: 181 -YTFDSFTNIIDVYVNYLRKKIDRDADKKLIHTVRGVGYIL 220 >gi|163847991|ref|YP_001636035.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222525873|ref|YP_002570344.1| winged helix family two component transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163669280|gb|ABY35646.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222449752|gb|ACM54018.1| two component transcriptional regulator, winged helix family [Chloroflexus sp. Y-400-fl] Length = 238 Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 43/222 (19%), Positives = 90/222 (40%), Gaps = 7/222 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + + +G+ + + D+ ++ L + Sbjct: 12 ILVIEDEPTIAESLRVGLTYEGMRVTVTTEGRSGLQVSEEQEVDLVILDLML--PDIDGM 69 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118 + R +RA S P+I ++ +Q + G DD + KP E+LARV A Sbjct: 70 VVCRRLRARSSTLPIIMLTARGEVQERVQGLQLGADDYIVKPFSFDELLARVYAVLRRAG 129 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + + + ++ R+ + G L E +LE M + + + + S ++ Sbjct: 130 VSRPSTVLRIAGLTLDTETREVTLNGRQLELTPTEFALLELFMRHPRRVFTRETLLSRVW 189 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G F + N+VE H+S LR+K+ + + + +GY + Sbjct: 190 G-FTYVGDSNIVEVHMSNLREKIGDH-ERKLIRTIYGVGYCL 229 >gi|326789756|ref|YP_004307577.1| transcriptional regulator [Clostridium lentocellum DSM 5427] gi|326540520|gb|ADZ82379.1| two component transcriptional regulator, winged helix family [Clostridium lentocellum DSM 5427] Length = 217 Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 49/221 (22%), Positives = 94/221 (42%), Gaps = 9/221 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + D G + + D+ ++ L Sbjct: 4 ILIVEDEVAINDLVKLNLHLVGHQCTSVFEGKSAIFAIQRESYDLIILDIML--PELDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + + P I ++ SLQ+ + F G DD + KP E+LARV AI RR + Sbjct: 62 EVIKQVNQ---TPTIFLTAKNSLQSRIQGFSLGADDYITKPFEMLELLARVEAILRRTQK 118 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 ++ E +++ D G++ +E +LE L+ NR +++ ++ ++G + Sbjct: 119 ASKYFEIRNVKIDFDSHQVFYNGQLVDFTPKEYNLLEVLINNRNIALSRERLLELVWG-Y 177 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 D + V+ HI KLRKKL + + + LGY ++ Sbjct: 178 DFEGDTRTVDVHIQKLRKKLSWEG---VIKTVYKLGYRLEV 215 >gi|218897513|ref|YP_002445924.1| DNA-binding response regulator [Bacillus cereus G9842] gi|228901111|ref|ZP_04065315.1| Sensor histidine kinase [Bacillus thuringiensis IBL 4222] gi|218541801|gb|ACK94195.1| DNA-binding response regulator [Bacillus cereus G9842] gi|228858517|gb|EEN02973.1| Sensor histidine kinase [Bacillus thuringiensis IBL 4222] Length = 231 Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 44/230 (19%), Positives = 84/230 (36%), Gaps = 12/230 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD + + ++G ++ + S+ D+ ++ L Sbjct: 5 ILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQKVSTYEVDLMILDIM--MPKRNGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARVA 113 E+ + +R ++ VP++ +S + +G DD + KP + E + Sbjct: 63 EVCQEVRENNTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSF 122 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 K + + + +V GE L E IL L +N G+ + +I Sbjct: 123 QNATSQKNEDGIIRIRSVEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEI 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222 F ++ D V HIS LR KL G + + +GY I+ Sbjct: 183 FERVWNE-DGYGSNKTVMVHISNLRDKLETVMNGEKFIHTVWGVGYKIEK 231 >gi|126733777|ref|ZP_01749524.1| two component transcriptional regulator, winged helix family protein [Roseobacter sp. CCS2] gi|126716643|gb|EBA13507.1| two component transcriptional regulator, winged helix family protein [Roseobacter sp. CCS2] Length = 226 Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 52/223 (23%), Positives = 88/223 (39%), Gaps = 6/223 (2%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 M ++ DD A ++D G + S R D+ ++ Sbjct: 1 MILVADDDAQIRDVVRIGLTQAGFGVAEAGDGRAALEKAESLRPDLIILDIG--MPEMDG 58 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117 LE+ R +R S VP++ ++ + + G DD V+KP RE++ARV Sbjct: 59 LEVCRALRKTSDVPILFLTARADEIDRVVGLELGADDYVSKPFSPRELVARVRAILKRSN 118 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 G I V V+ L RE +LE L+A +++ Q+ AI Sbjct: 119 GEVAEQVVMRRGVISVDPARHLCHVKDATVTLTSREMDLLERLIARPDHVMSRPQLVDAI 178 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 YG + V + ++SH+ LR KL D +++ +G + Sbjct: 179 YGT-NVNVSDRTMDSHLRNLRSKLGKAGCADAIETVHGVGIRM 220 >gi|172062381|ref|YP_001810032.1| two component heavy metal response transcriptional regulator [Burkholderia ambifaria MC40-6] gi|171994898|gb|ACB65816.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia ambifaria MC40-6] Length = 223 Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 43/221 (19%), Positives = 94/221 (42%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + +++ + + +L D+ ++ L Sbjct: 3 ILIVEDEPKMASYLRKGLAEASYTVDVAENGKDGLFLALHEDFDLVVLDVML--PELDGF 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +RA Q P++ ++ +++ + + G DD + KP + E LAR+ ++ RR Sbjct: 61 EVLRRLRAQKQTPVLLLTARDAIEDKVTGLELGADDYLLKPFAYAEFLARIRSLLRRAPR 120 Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + V R L +E +L+ L G+ + +T I S I+ + Sbjct: 121 NARDFLQVADLEVDLIKRRVRRADNRIDLTAQEFALLQLLAEREGEVLTRTFITSQIWDM 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + NVV++ I +LR K+ N + + R +GY ++ Sbjct: 181 -NFDSDTNVVDAAIKRLRAKIDNAYEKKLIHTIRGMGYVLE 220 >gi|323527236|ref|YP_004229389.1| winged helix family two component transcriptional regulator [Burkholderia sp. CCGE1001] gi|323384238|gb|ADX56329.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1001] Length = 220 Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 56/221 (25%), Positives = 100/221 (45%), Gaps = 9/221 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D ++ +G +G +++ E SS D+ ++ L L Sbjct: 3 ILLVEDDRMIAEGVRKALRGEGFAVDWVEDGEAALSAASSQPYDLVLLDLGL--PKRDGL 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ R +RA P++ ++ ++ + D+G DD + KP E+ AR+ A+ RR Sbjct: 61 DVLRTLRARGHALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQA 120 Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++ + + G L RE +LE L+A G ++K+Q+ +YG Sbjct: 121 GRSDSTIRHGNLTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + E + N VE +I LRKKL G D + + R LGY I Sbjct: 181 -WGEEIGSNTVEVYIHALRKKL----GADLIRNVRGLGYMI 216 >gi|260169549|ref|ZP_05756360.1| Transcriptional regulatory protein [Brucella sp. F5/99] gi|261759076|ref|ZP_06002785.1| transcriptional regulatory protein [Brucella sp. F5/99] gi|261739060|gb|EEY27056.1| transcriptional regulatory protein [Brucella sp. F5/99] Length = 228 Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 42/224 (18%), Positives = 88/224 (39%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++D + +G ++ + E + D+ ++ L G + Sbjct: 7 IAVVEDEEALSVLLRYNLEAEGYQVDTMLRGDEAEIALRESVPDLLILDWML--PGVSGI 64 Query: 62 ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIY 116 EL R +R + P+I ++ + G DD V KP E+ + Sbjct: 65 ELCRRLRQRPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKAMLRR 124 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + ++ + G + + + + L E R+LEY M + G+ +++Q+ Sbjct: 125 ANPSILSHVLKVGDLLLDRQQHRVYRKEKEVHLGPTEFRLLEYFMMSPGRVFSRSQLLDG 184 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G D V++ V+ H+ +LRK + D + + R GYS Sbjct: 185 VWG-PDIYVDDRTVDVHVGRLRKVINVGRAADSIRTVRGAGYSF 227 >gi|257439801|ref|ZP_05615556.1| phosphate regulon response regulator PhoB [Faecalibacterium prausnitzii A2-165] gi|257197710|gb|EEU95994.1| phosphate regulon response regulator PhoB [Faecalibacterium prausnitzii A2-165] Length = 229 Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 55/226 (24%), Positives = 95/226 (42%), Gaps = 6/226 (2%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEK 59 M +++D A +++ G ++ F + E +A ++ ++ L G G Sbjct: 1 MIYIVEDDAAIRELEQYALQSSGYGVQSFETSEPFWQAMRAAEPELVILDVMLPGEDGFS 60 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYR 117 +L+ R A ++P+I ++ S T+ D G DD + KP E L+RV A Sbjct: 61 ILKKLRNTPALRRLPIIMVTAKSSELDTVRGLDCGADDYITKPFGIMEFLSRVRAALRRS 120 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + N I + + V G L +E +L L+ N V + I + Sbjct: 121 APEEKQNVYAFHEILLDNARHSVTVNGTHIDLTYKEYSLLRLLLENTNLVVTRETILQVV 180 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 +G D +VE V+ HI LRKKL + + + R +GY + N Sbjct: 181 WGT-DISVESRTVDMHIRTLRKKLGDAG--RYICTVRKVGYKLADN 223 >gi|302519462|ref|ZP_07271804.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. SPB78] gi|302428357|gb|EFL00173.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. SPB78] Length = 227 Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 52/222 (23%), Positives = 93/222 (41%), Gaps = 9/222 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +LI+D V+ G + S E ++A DV ++ L G LE Sbjct: 5 LLIEDDEPVRRAVTLGLRRQGHEVRAAASGEEGLAAFAAAVPDVVVLDWML--PGMDGLE 62 Query: 63 LPRII--RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118 + R + + VPL+ ++ + ++G DD V KP+ R + AR+ A Sbjct: 63 VCRRLRTPERAHVPLLLVTARGDDIDVVVGLEAGADDYVVKPVRARVLDARIRAVLRRLD 122 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + GP+ + G +G PL E R+L L A+ G+ +++ Q+ A++ Sbjct: 123 TPGTPPPETHGPLTIDRTGLRVAHEGAPVPLAPSELRLLLTLSASPGQVLSRQQLLEAVW 182 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + +V++ + +LR KL D V++ R GY Sbjct: 183 -EHSYHGDIRLVDACVKRLRNKL--AAAADRVETVRGFGYRF 221 >gi|228927617|ref|ZP_04090669.1| Sensor histidine kinase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228832097|gb|EEM77682.1| Sensor histidine kinase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 242 Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 44/230 (19%), Positives = 83/230 (36%), Gaps = 12/230 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD + + ++G + + + S+ D+ ++ L Sbjct: 16 ILIIDDDKEIVELLAVYLRNEGYKIYKAYDGDEALQMISTYEVDLMILDIM--MPKRNGL 73 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARVA 113 E+ + +R ++ VP++ +S + +G DD + KP + E + Sbjct: 74 EVCQEVRENNTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSF 133 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 K + + +V GE L E IL L +N G+ + +I Sbjct: 134 QNATSQKNEDGMIRIRSAEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEI 193 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222 F ++ D V HIS LR KL G + + +GY I+ Sbjct: 194 FERVWNE-DGYGSNKTVMVHISNLRDKLETGMNGEKFIHTVWGVGYKIEK 242 >gi|261419917|ref|YP_003253599.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC61] gi|319766731|ref|YP_004132232.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC52] gi|261376374|gb|ACX79117.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC61] gi|317111597|gb|ADU94089.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y412MC52] Length = 226 Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 46/222 (20%), Positives = 87/222 (39%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L+DD + D +G S D+ ++ Sbjct: 4 LLLVDDEERMLDLLELYLAPNGYRCVKRRSGAEAIDYLRRHHADLVLLDVM--MPELDGW 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E R IR+ S VP++ ++ + G DD V KP E+LAR+ A+ RR Sbjct: 62 ETCRRIRSFSNVPIMMVTARDETADIVQGLKIGADDYVTKPFDEAELLARIEAVLRRTAG 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + + + + L +E IL L+ + + ++ QI ++++G + Sbjct: 122 GRSAIRAARLVWDEEEHTVRYEDKPIALTPKEFAILGLLLKHPNQVFSRGQIIASLWG-Y 180 Query: 182 DEAVEENVVESHISKLRKKLRNKL--GFDPVDSKRFLGYSID 221 EE V+SH+ +R+KLR + + + +GY + Sbjct: 181 LADTEERTVDSHMKNIREKLRKAGFPADEYLQTVWGVGYKWE 222 >gi|148654922|ref|YP_001275127.1| two component transcriptional regulator [Roseiflexus sp. RS-1] gi|148567032|gb|ABQ89177.1| two component transcriptional regulator, winged helix family [Roseiflexus sp. RS-1] Length = 229 Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 42/222 (18%), Positives = 90/222 (40%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++D +G S+ S + D+ ++ Sbjct: 9 ILIVDDEPGLRDLVRINLEHEGFSVLEAESGAQGLQMVREQHPDLMILDVM--MPEMDGW 66 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119 E+ R +R SQ+P++ ++ + + +SG DD + KP + E+ AR+ A Sbjct: 67 EVCRRLREFSQIPVLMLTARTQSKDIVTGLESGADDYLTKPFNMDELTARIRALLRRVPS 126 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 A G I + R+ V+GE L E +L L + G + + ++G Sbjct: 127 PNRPIVAGGGEIVIDKQKREVLVRGEPVDLTPTEYDLLLLLAEHAGAVLDHETLLRGVWG 186 Query: 180 LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + + + ++ +I LR+K+ + + ++ +GY + Sbjct: 187 -HEYTRDNDYLKVYIWHLRRKIEQDPREPKLLLTEWGVGYRL 227 >gi|124266470|ref|YP_001020474.1| two component transcriptional regulator [Methylibium petroleiphilum PM1] gi|124259245|gb|ABM94239.1| two component transcriptional regulator, winged helix family [Methylibium petroleiphilum PM1] Length = 233 Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 43/223 (19%), Positives = 92/223 (41%), Gaps = 8/223 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + + + G + + + + S D+ ++ L G+ L Sbjct: 5 LVVEDESAIAELISINLRHAGYEVTIAATADQAQLAIDSVLPDLVILDWML--PGQSGLA 62 Query: 63 LPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L + R S+ P+I ++ + D+G DD + KP E++AR+ A+ RR Sbjct: 63 LAKRWRGESRTKELPVIMLTARAEEGDKVAGLDAGADDYLTKPFSTHELMARIRAVLRRK 122 Query: 120 KVSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + R+ R + + E R+L +LM + + ++ Q+ + Sbjct: 123 APEALDSAVELGVLRLDPSTRRVARGEQEVKIGPTEFRLLHFLMTHPERVHSRAQLLDRV 182 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G +EE V+ H+ +LR+ L +++ R GY + Sbjct: 183 WGDH-VFIEERTVDVHVKRLREALAPVACSTMIETVRGAGYRL 224 >gi|326329444|ref|ZP_08195768.1| DNA-binding response regulator [Nocardioidaceae bacterium Broad-1] gi|325952770|gb|EGD44786.1| DNA-binding response regulator [Nocardioidaceae bacterium Broad-1] Length = 224 Score = 141 bits (355), Expect = 8e-32, Method: Composition-based stats. Identities = 42/223 (18%), Positives = 89/223 (39%), Gaps = 8/223 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD V++ +G + ++ DV ++ +E Sbjct: 2 LVVDDDKAVRESLRRSLEFNGYVVALAGDGAEALAGIANHGPDVVVMDVM--MPRLDGIE 59 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + +RA P++ ++ ++ +D D+G DD + KP E+LAR+ A+ RR Sbjct: 60 ATKALRAAGNDVPILVLTARDAVGDRVDGLDAGADDYLTKPFALEELLARLRALLRRAAP 119 Query: 122 SNNRAETGPIR----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 E + + R+ L R E +LE + + + ++ I + Sbjct: 120 IGEEDEETLSFADLTMNTTTREVTRGDRAIELTRTEFTLLEMFLRRPRRVLDRSFILEEV 179 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G +D N +E ++ LR+K + + + R +GY + Sbjct: 180 WG-YDFPTTANSLEVYVGYLRRKTEAEGEARLIHTVRGIGYVL 221 >gi|308175669|ref|YP_003922374.1| two-component response regulator YxdJ [Bacillus amyloliquefaciens DSM 7] gi|307608533|emb|CBI44904.1| two-component response regulator YxdJ [Bacillus amyloliquefaciens DSM 7] gi|328555650|gb|AEB26142.1| two-component response regulator YxdJ [Bacillus amyloliquefaciens TA208] Length = 229 Score = 141 bits (355), Expect = 8e-32, Method: Composition-based stats. Identities = 46/225 (20%), Positives = 86/225 (38%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++ G + + DV ++ L Sbjct: 4 IMIVEDSEDIRGLLRNYLEKYGYQTVAAADFTAVLDVFLQEKPDVVLLDINL--PSYDGY 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115 R IR HS P+I IS + ++G DD + KP + + R A Sbjct: 62 YWCRQIRQHSTSPIIFISARSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYG 121 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 K E +++F + + Q E L ++E ++LE L+ K + ++ Sbjct: 122 EYAAKQGEKVLEYAGVQLFVERFELRFQDEKSELSKKESKLLEVLLERGEKVTGRDRLME 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + D V++N + +I++LRKKLR ++S R GY + Sbjct: 182 KTWDT-DIFVDDNTLNVYITRLRKKLRELNAPVSIESVRGEGYQL 225 >gi|170693452|ref|ZP_02884611.1| two component transcriptional regulator, winged helix family [Burkholderia graminis C4D1M] gi|170141607|gb|EDT09776.1| two component transcriptional regulator, winged helix family [Burkholderia graminis C4D1M] Length = 220 Score = 141 bits (355), Expect = 8e-32, Method: Composition-based stats. Identities = 55/221 (24%), Positives = 100/221 (45%), Gaps = 9/221 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D ++ +G +G +++ E SS D+ ++ L L Sbjct: 3 ILLVEDDRMIAEGVRKALRGEGFAVDWVEDGEAALSAASSQPYDLVLLDLGL--PKRDGL 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ R +RA P++ ++ ++ + D+G DD + KP E+ AR+ A+ RR Sbjct: 61 DVLRTLRARGHALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQS 120 Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++ + + G L RE +LE L+A G ++K+Q+ +YG Sbjct: 121 GRSDSTIRHGNLTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + E + N VE +I LRKKL G + + + R LGY I Sbjct: 181 -WGEEIGSNTVEVYIHALRKKL----GAELIRNVRGLGYMI 216 >gi|331653384|ref|ZP_08354389.1| putative 2-component transcriptional regulator YedW [Escherichia coli M718] gi|331049482|gb|EGI21554.1| putative 2-component transcriptional regulator YedW [Escherichia coli M718] Length = 260 Score = 141 bits (355), Expect = 8e-32, Method: Composition-based stats. Identities = 50/219 (22%), Positives = 97/219 (44%), Gaps = 3/219 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D ++ + G ++ + +L + ++ L G Sbjct: 40 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIML--PGMDGW 97 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + +R Q P+I ++ S+ + DSG +D + KP E+LARV A R+ Sbjct: 98 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 157 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 N+ E +R+ S + L R+E ++L L + G+ + +T I S I+G+ Sbjct: 158 LNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 216 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + N V+ I +LR K+ + + + R +GYS Sbjct: 217 NFDSDTNTVDVAIRRLRAKVDDPFPEKLITTIRGMGYSF 255 >gi|229590186|ref|YP_002872305.1| response regulator protein [Pseudomonas fluorescens SBW25] gi|229362052|emb|CAY48953.1| response regulator protein [Pseudomonas fluorescens SBW25] Length = 249 Score = 141 bits (355), Expect = 8e-32, Method: Composition-based stats. Identities = 40/226 (17%), Positives = 87/226 (38%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D A + + + +G + + + D+ ++ L G L Sbjct: 20 ILLVEDDAALSELIASYLERNGYQVSVLSRGDHVRERARLNPPDLVILDLML--PGLDGL 77 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAI 115 ++ R++RA S P++ ++ + + G DD V KP R + Sbjct: 78 QVCRLLRADSAGLPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLLRRSS 137 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + +N++ G + + R + + L E +L L + G+ +++ QI Sbjct: 138 LSEPQAANDQIIMGNLCIDLSERTVTWREQSVELSSGEYNLLVVLARHAGEVLSRDQILQ 197 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + G+ + + V+ ISKLR+K + + + GY Sbjct: 198 RLRGI-EFNGTDRSVDVAISKLRRKFDDNAGEARKIKTVWGKGYLF 242 >gi|150021690|ref|YP_001307044.1| two component transcriptional regulator [Thermosipho melanesiensis BI429] gi|149794211|gb|ABR31659.1| two component transcriptional regulator, winged helix family [Thermosipho melanesiensis BI429] Length = 222 Score = 141 bits (355), Expect = 8e-32, Method: Composition-based stats. Identities = 51/220 (23%), Positives = 100/220 (45%), Gaps = 7/220 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++D +G ++ + S R D+ ++ L G Sbjct: 4 ILIVEDDETLRDLLKRYIKSEGYEVDEAENNFEMRKKLSKERYDLVLLDIMLP-DGLSTD 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ELP I + ++ +I +S + + + G DD V KP + RE++AR+ A +RR+ Sbjct: 63 ELPEIKVLYPKLGIIIVSAKDNDSDKIYGLEIGADDYVTKPFNPREVVARIKAFFRRISG 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + G +++F D ++ ++ +E IL L N ++ +I ++ Sbjct: 123 EREVIKFGQLQIFCDDYLVKLNDKIIDFTAKEFEILCLLAKNPNVVFSRERILDIVW--K 180 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 DE + + VV+ HIS +R KL G D + + R +GY + Sbjct: 181 DEFISDRVVDVHISNIRNKL----GKDSIITVRGVGYKFN 216 >gi|302559197|ref|ZP_07311539.1| DNA-binding response regulator [Streptomyces griseoflavus Tu4000] gi|302476815|gb|EFL39908.1| DNA-binding response regulator [Streptomyces griseoflavus Tu4000] Length = 240 Score = 141 bits (355), Expect = 8e-32, Method: Composition-based stats. Identities = 46/235 (19%), Positives = 86/235 (36%), Gaps = 20/235 (8%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L +D +++ +G + +R DV ++ G L+ Sbjct: 6 LLAEDDRAIRNALERALTLEGYRVTAVADGVEALAQAHRSRPDVLVLDVM--MPGIDGLQ 63 Query: 63 LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R++RA P++ ++ + D+G DD V KP E+ AR+ A+ RR Sbjct: 64 VCRVLRAEGDSTPVLMLTALVETADRIAGLDAGADDYVVKPFDVEEVFARLRALLRRAAP 123 Query: 122 SNNRAETGPI----------------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRG 165 R+ R L R E +LE L+ N G Sbjct: 124 VPEPVREPAEEPKPDTSGRFVEAAGLRMDPQARRAWRGRRELELTRTEFELLELLIRNAG 183 Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + I+ I+G +D + ++ LR+KL + + + R +GY + Sbjct: 184 VVLDHSTIYDRIWG-YDFGPGSKNLAVYVGYLRRKLDDPGAPQLIHTVRGVGYVL 237 >gi|239928855|ref|ZP_04685808.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291437180|ref|ZP_06576570.1| response regulator [Streptomyces ghanaensis ATCC 14672] gi|291340075|gb|EFE67031.1| response regulator [Streptomyces ghanaensis ATCC 14672] Length = 221 Score = 141 bits (355), Expect = 8e-32, Method: Composition-based stats. Identities = 45/223 (20%), Positives = 95/223 (42%), Gaps = 10/223 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G +++ + + D+ ++ L G Sbjct: 3 LLIVEDEKRLALSLAKGLTAEGYAVDVVHDGREGLHRATEGSYDLVVLDIML--PGLNGY 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118 + +RA P++ ++ + D+G DD + KP + ++ARV A R+ Sbjct: 61 RVCAALRAAGHDVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARVKALLRRRQ 120 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++ G +RV + R + + L +E +LE L+ G+ V+K +I ++ Sbjct: 121 GAGASPVHVHGDLRVDTAARRVFLGEDEVALTAKEFSVLEQLVLRAGEVVSKAEILEHVW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 F + N+VE ++S LR+KLR + + R GY ++ Sbjct: 181 D-FAYEGDPNIVEVYVSALRRKLRA----GLIRTVRGAGYRLE 218 >gi|222110191|ref|YP_002552455.1| winged helix family two component transcriptional regulator [Acidovorax ebreus TPSY] gi|221729635|gb|ACM32455.1| two component transcriptional regulator, winged helix family [Acidovorax ebreus TPSY] Length = 242 Score = 141 bits (355), Expect = 8e-32, Method: Composition-based stats. Identities = 53/228 (23%), Positives = 94/228 (41%), Gaps = 10/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS-AREDVSAIEAFLIGKGEKV 60 ++++D + D + G + E ++ D++ ++ L G Sbjct: 7 ILVVEDEQDIADVLLDYLRHAGYAPEHAADGRTALQALTAPQPPDLTLLDVML--PGIDG 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R R H+ P++ I+ L + G DD + KP RE++ARV A+ RR Sbjct: 65 LEVLRQARRHTDNPIVVITARVEEVDRLIGLELGADDYICKPFSPREVVARVKAVLRRRA 124 Query: 121 VSNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 A + + G + L RE +L L+A+ +++ Q+ Sbjct: 125 PLAQAAAQAELAYGALVLDEAQLQATLHGTLVALTPREWHLLRTLLAHPRSVLSRAQLLQ 184 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSID 221 Y + E V+SHI LR+KLR + G D + S +G++ D Sbjct: 185 HAYPDSPQEPNERAVDSHIKNLRRKLRSADPAGHDWIRSVYGVGFAFD 232 >gi|188493946|ref|ZP_03001216.1| heavy metal response regulator [Escherichia coli 53638] gi|193071320|ref|ZP_03052238.1| heavy metal response regulator [Escherichia coli E110019] gi|300899234|ref|ZP_07117505.1| transcriptional activator protein Irlr [Escherichia coli MS 198-1] gi|300901970|ref|ZP_07119998.1| transcriptional activator protein Irlr [Escherichia coli MS 84-1] gi|301304238|ref|ZP_07210353.1| transcriptional activator protein Irlr [Escherichia coli MS 124-1] gi|331683515|ref|ZP_08384116.1| transcriptional activator protein CopR [Escherichia coli H299] gi|188489145|gb|EDU64248.1| heavy metal response regulator [Escherichia coli 53638] gi|192955362|gb|EDV85847.1| heavy metal response regulator [Escherichia coli E110019] gi|300357145|gb|EFJ73015.1| transcriptional activator protein Irlr [Escherichia coli MS 198-1] gi|300405938|gb|EFJ89476.1| transcriptional activator protein Irlr [Escherichia coli MS 84-1] gi|300840495|gb|EFK68255.1| transcriptional activator protein Irlr [Escherichia coli MS 124-1] gi|315253295|gb|EFU33263.1| transcriptional activator protein Irlr [Escherichia coli MS 85-1] gi|331079730|gb|EGI50927.1| transcriptional activator protein CopR [Escherichia coli H299] Length = 260 Score = 141 bits (355), Expect = 8e-32, Method: Composition-based stats. Identities = 50/219 (22%), Positives = 97/219 (44%), Gaps = 3/219 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D ++ + G ++ + +L + ++ L G Sbjct: 40 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIML--PGMDGW 97 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + +R Q P+I ++ S+ + DSG +D + KP E+LARV A R+ Sbjct: 98 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHT 157 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 N+ E +R+ S + L R+E ++L L + G+ + +T I S I+G+ Sbjct: 158 LNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 216 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + N V+ I +LR K+ + + + R +GYS Sbjct: 217 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 255 >gi|219848680|ref|YP_002463113.1| winged helix family two component transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219542939|gb|ACL24677.1| two component transcriptional regulator, winged helix family [Chloroflexus aggregans DSM 9485] Length = 226 Score = 141 bits (355), Expect = 8e-32, Method: Composition-based stats. Identities = 55/226 (24%), Positives = 90/226 (39%), Gaps = 9/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + G + + + D+ ++ Sbjct: 3 ILVVDDDIPSAKLTSYVLEEAGYRVLRAHDATSIMQMIEQHNPDLILLDIM--MPKIDGF 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R IR S+VP+I +S LQ + G DD + KP E+LARV A+ RR Sbjct: 61 DVCRQIRRSSEVPIIFLSARSQLQDRVMGLQIGGDDYLVKPYEPSELLARVEAVLRRRNA 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF-----PLPRRERRILEYLMANRGKRVAKTQIFSA 176 T + E + L E R+L YLM N G+ + +QI S Sbjct: 121 DVLNTSTRLSQGDITLDPVEHKVIFTDGRTVELTPLEFRLLYYLMKNAGRILNVSQILSK 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 ++G +D E N+V +I +LR K+ V + R LGY + Sbjct: 181 VWG-YDYEGESNLVAVYIRRLRTKIEENPNNPRHVITVRNLGYKFE 225 >gi|291547625|emb|CBL20733.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus sp. SR1/5] Length = 229 Score = 141 bits (355), Expect = 8e-32, Method: Composition-based stats. Identities = 47/227 (20%), Positives = 85/227 (37%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + D G +E N + D+ ++ L Sbjct: 4 ILIIEDEEAIADLEKDYLELSGFEVEIENRGDTGLVRAMKEEFDLIILDLML--PEVDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 ++ R +R P+I +S + G DD + KP E++ARV A R Sbjct: 62 DICRQVREEKNTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHMERYNR 121 Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N+ E I++ R V GE +E +L +L N + K ++F Sbjct: 122 LVGSNVHKNDVIEIRGIKIDKTARRVWVNGEETTFTTKEFDLLTFLAENPNRVFTKEELF 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 I+ + + + V HI K+R+K+ N +++ +GY Sbjct: 182 REIWDM-ESVGDIATVTVHIKKIREKIEFNTAKPQYIETIWGVGYRF 227 >gi|227489423|ref|ZP_03919739.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867] gi|227541018|ref|ZP_03971067.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866] gi|227090601|gb|EEI25913.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867] gi|227183278|gb|EEI64250.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866] Length = 233 Score = 141 bits (355), Expect = 8e-32, Method: Composition-based stats. Identities = 48/224 (21%), Positives = 91/224 (40%), Gaps = 10/224 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + G + + E + +R D ++ G E Sbjct: 9 LVVDDEPNIVELLQVSLRFQGFDVVTASGGEEALKVAEESRPDAFILDVM--MPGMDGFE 66 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L +R P++ ++ +++ + G DD V KP E++ R+ I RR K Sbjct: 67 LLTKLRETGHDGPVLFLTAKDAVEDKIHGLTIGADDYVVKPFSLEEVITRLRVILRRGKA 126 Query: 122 SNNRA-----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + + + G + L E +L YLM N V+K +I Sbjct: 127 EETEEASGVLTYADLTLNDETHEVTKAGTIVDLSPTEFNLLRYLMLNAEVVVSKAKILDN 186 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +D + NVVES+IS LR+K+ + + + R +GY + Sbjct: 187 VW-HYDFGGDGNVVESYISYLRRKI-DTQEPQLIQTVRGVGYVL 228 >gi|218440560|ref|YP_002378889.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] gi|218173288|gb|ACK72021.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] Length = 246 Score = 141 bits (355), Expect = 8e-32, Method: Composition-based stats. Identities = 46/228 (20%), Positives = 88/228 (38%), Gaps = 9/228 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++IDD + + G + + L + D+ ++ L G V Sbjct: 4 ILVIDDDPAISELVSINLEMAGYDVNQAEDGIKGQALAVQLQPDLIMLDLMLPKVDGFTV 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R S +P++ ++ Q ++ F++G DD + KP E+LARV A+ RR Sbjct: 64 CQRLRRDDRTSDIPILMLTALGQTQDKVEGFNAGADDYLTKPFEVEEMLARVRALLRRTD 123 Query: 121 VSNNRAETGPIRVF------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 A+ I + + + + L E +L L+ G+ V+ + I Sbjct: 124 RIPQAAKHSEILNYGPLTLVPERFEAIWFNKTVKLTHLEFELLHCLLQRHGQTVSPSDIL 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 ++G +D + + HI LR KL + + GY ++ Sbjct: 184 KEVWG-YDPDDDIETIRVHIRHLRTKLEPDPRHPRYIKTVYGAGYCLE 230 >gi|227496351|ref|ZP_03926642.1| response regulator [Actinomyces urogenitalis DSM 15434] gi|226834127|gb|EEH66510.1| response regulator [Actinomyces urogenitalis DSM 15434] Length = 248 Score = 141 bits (355), Expect = 8e-32, Method: Composition-based stats. Identities = 43/230 (18%), Positives = 85/230 (36%), Gaps = 14/230 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++D + G + D+ ++ L Sbjct: 16 LLVVDDEPNIRDLLASSLRFAGFEVVTAADGNGALRAVDQEEPDLVVLDVML--PDMDGF 73 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI----HHREILARVAAIY 116 + R +R P++ ++ + + G DD V KP I A + + Sbjct: 74 TVARRLRERDVTTPILFLTARDDMSDKVQGLTVGGDDYVTKPFGLEEVVARIRAILRRTH 133 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 ++ + + D + G L E ++L YLM N G+ V+K QI Sbjct: 134 ATQDENDGIVRVADLVLDEDAHEVHRAGVEVDLSPTEFKLLRYLMLNAGRVVSKAQILDH 193 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNK------LGFDPVDSKRFLGYSI 220 ++ +D + +VES+IS LR+K+ + ++R +GY + Sbjct: 194 VW-EYDWNGDAAIVESYISYLRRKIDQIETADGQPVAPLIQTRRGVGYML 242 >gi|27382730|ref|NP_774259.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] gi|27355902|dbj|BAC52884.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] Length = 234 Score = 141 bits (355), Expect = 8e-32, Method: Composition-based stats. Identities = 48/226 (21%), Positives = 89/226 (39%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ G+ + + ++ R D+ ++ L Sbjct: 5 ILIVDDEGHIREVIRVALKKAGMDVIEARDGKEALARFAADRPDLIVLDVG--MPEFDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R IR S VP++ +S + + G DD V KP RE++ARV I RRL Sbjct: 63 DVCREIRKGSDVPILFLSARDEEIDRVLGLEIGGDDYVTKPFSPRELVARVNVILRRLSP 122 Query: 122 SNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N A+ GP + + G L E IL + + Q+ Sbjct: 123 RNGEAKAGPSALAQGGLLIDPEQHVASFAGTPLKLTAIEFGILRAFLTRPTSVFNREQLM 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 A Y + V + ++SHI +R KL + +++ +G+ + Sbjct: 183 RAAY-QLNIQVSDRTIDSHIRNIRAKLAALSCDNVIETIHGVGFKL 227 >gi|323494003|ref|ZP_08099119.1| response regulator BaeR [Vibrio brasiliensis LMG 20546] gi|323311630|gb|EGA64778.1| response regulator BaeR [Vibrio brasiliensis LMG 20546] Length = 221 Score = 141 bits (355), Expect = 8e-32, Method: Composition-based stats. Identities = 49/222 (22%), Positives = 89/222 (40%), Gaps = 4/222 (1%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 M ++++D + G D+ + L+ Sbjct: 1 MILIVEDEPSLASVVADYLSHSGYQTHIIGDGAEVIDWVRQYNPDLILL--DLMLPNRDG 58 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L++ R +R+ S +P+I + L + G DD V KP RE++ARV + RR + Sbjct: 59 LDIYRELRSFSDIPIIMATAKVDEIDRLLGLELGADDYVCKPYSPRELVARVKNVLRRFQ 118 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + P++V D V L E ++L Y + G+ ++ Q+ + IY Sbjct: 119 HTPSHTTRSPLKVDPDKMQTLVDDTPVMLTPAEFQLLCYFNQHHGQVFSRDQLMNRIYS- 177 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSID 221 V + ++SHI LRKK++ D + S +GY + Sbjct: 178 DGRVVTDRTIDSHIKNLRKKVQAVNDQYDWIKSVYGVGYRFE 219 >gi|311033061|ref|ZP_07711151.1| DNA-binding response regulator [Bacillus sp. m3-13] Length = 232 Score = 141 bits (355), Expect = 8e-32, Method: Composition-based stats. Identities = 43/220 (19%), Positives = 90/220 (40%), Gaps = 4/220 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++ +++ +G + + + + + D + L E Sbjct: 12 LIVESDQEIRNLLRTNLEKEGYEVLEAADGKRAKKMI--PQLDPCILLLDLSLPKISGEE 69 Query: 63 LPRIIRAH--SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R +R S +P+I IS + F G DD V KP E++ R+ A+ RR Sbjct: 70 ICRWVRNDLKSLMPIIIISGKTEESDIIKGFKLGADDYVVKPFRPAELMVRIEAVLRRTA 129 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + + + G L + E ++L + M N + + + QI ++IY Sbjct: 130 ARCGKLSFTGFTLKPAKGEALINGSPLNLTKFEFKLLHFFMQNSDQVLTREQILNSIYEH 189 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ V + ++ HI LR+K++ D + + R +GY Sbjct: 190 HEKMVSDRTIDVHIKHLREKIKMYTPKDYIQTVRGMGYKF 229 >gi|238855833|ref|ZP_04646122.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Lactobacillus jensenii 269-3] gi|282933323|ref|ZP_06338706.1| transcriptional regulatory protein WalR [Lactobacillus jensenii 208-1] gi|313472807|ref|ZP_07813295.1| DNA-binding response regulator VicR [Lactobacillus jensenii 1153] gi|238831496|gb|EEQ23844.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Lactobacillus jensenii 269-3] gi|281302508|gb|EFA94727.1| transcriptional regulatory protein WalR [Lactobacillus jensenii 208-1] gi|313448883|gb|EFR61222.1| DNA-binding response regulator VicR [Lactobacillus jensenii 1153] Length = 237 Score = 141 bits (355), Expect = 8e-32, Method: Composition-based stats. Identities = 42/228 (18%), Positives = 88/228 (38%), Gaps = 14/228 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G ++ E + D+ ++ L + L Sbjct: 5 ILVVDDEKPISDIIKFNLTKEGFEVDTAYDGEEAVKKVNEIDPDLMILDLML--PKKDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILAR 111 E+ R +R +P+I ++ + + + G DD V KP +R Sbjct: 63 EVAREVRQTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELLARVKANLRRRDI 122 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 V + N G + + D E G+ L RE +L YL ++ G+ + + Sbjct: 123 VQKQADESENENKNITIGNLVIMPDAYIVEKDGQKIELTHREFELLHYLASHMGQVMTRE 182 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGY 218 + +G +D + V+ + +LR+K+ + + ++R +GY Sbjct: 183 HLLQTAWG-YDYFGDVRTVDVTVHRLREKIEDNPIQPKILVTRRGVGY 229 >gi|114800395|ref|YP_760884.1| DNA-binding heavy metal response regulator [Hyphomonas neptunium ATCC 15444] gi|114740569|gb|ABI78694.1| DNA-binding heavy metal response regulator [Hyphomonas neptunium ATCC 15444] Length = 227 Score = 141 bits (355), Expect = 8e-32, Method: Composition-based stats. Identities = 45/221 (20%), Positives = 85/221 (38%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + G +++ + E L + D ++ G + Sbjct: 3 ILIVEDEPKTIAYLQRGLTEQGYAVDTAANGEDGLHLALTGEYDAIVMDVM--MPGLDGV 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + +R P+I ++ + L +G DD + KP E++AR+ AI RR + Sbjct: 61 LVLQSLRISKDTPVIFLTARDKVDDRLRGLGAGADDYLVKPFSFLELVARIQAITRRGRT 120 Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + R L RE +L L R + V+KT I ++ + Sbjct: 121 RETTLIQVADLHIDLVSRRAIRGARRLNLTAREFSLLAALARRRSQIVSKTAIAELVWDI 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + NVVE I +LR KL + + R +GY ++ Sbjct: 181 -NFDTNTNVVEVAIKRLRSKLEEPGEIRLLHTVRGMGYVLE 220 >gi|260664969|ref|ZP_05865819.1| phosphate regulon transcriptional regulatory protein PhoB [Lactobacillus jensenii SJ-7A-US] gi|260561023|gb|EEX26997.1| phosphate regulon transcriptional regulatory protein PhoB [Lactobacillus jensenii SJ-7A-US] Length = 237 Score = 141 bits (355), Expect = 8e-32, Method: Composition-based stats. Identities = 42/228 (18%), Positives = 88/228 (38%), Gaps = 14/228 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G ++ E + D+ ++ L + L Sbjct: 5 ILVVDDEKPISDIIKFNLTKEGFEVDTAYDGEEAVKKVNEIDPDLMILDLML--PKKDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILAR 111 E+ R +R +P+I ++ + + + G DD V KP +R Sbjct: 63 EVAREVRQTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRDI 122 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 V + N G + + D E G+ L RE +L YL ++ G+ + + Sbjct: 123 VQKQADESENENKNITIGNLVIMPDAYIVEKDGQKIELTHREFELLHYLASHMGQVMTRE 182 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGY 218 + +G +D + V+ + +LR+K+ + + ++R +GY Sbjct: 183 HLLQTAWG-YDYFGDVRTVDVTVHRLREKIEDNPIQPKILVTRRGVGY 229 >gi|229084861|ref|ZP_04217116.1| Two-component response regulator vanR [Bacillus cereus Rock3-44] gi|228698441|gb|EEL51171.1| Two-component response regulator vanR [Bacillus cereus Rock3-44] Length = 232 Score = 141 bits (355), Expect = 8e-32, Method: Composition-based stats. Identities = 36/229 (15%), Positives = 82/229 (35%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A + +G + ++ + + ++ + Sbjct: 6 ILIVDDDADIVQLIALHLKQEGYKVIKAYDGVEAIYMLDTNDIQLVLLDVM--MPTMDGV 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR--------EILARVA 113 E+ R IR +P++ +S + + +G DD + KP ++ Sbjct: 64 EVCRRIREKFNIPVMFLSAKSADIDKVIGLSTGADDYITKPFSMMELVARVKAQLRRYTY 123 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 +V N+ + + + R + G+ L + E IL + NR + +I Sbjct: 124 FNQVPSEVHENKIQIRGLEIDELSRTVMLYGKSINLTKTEYDILHLMAKNRNRVFTLEEI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + +++ N V HI++LR K+ + + +GY I+ Sbjct: 184 YESVWRERAHE-SNNTVMVHIARLRNKIEENPKESTIIQNVWGVGYKIE 231 >gi|148655542|ref|YP_001275747.1| two component transcriptional regulator [Roseiflexus sp. RS-1] gi|148567652|gb|ABQ89797.1| two component transcriptional regulator, winged helix family [Roseiflexus sp. RS-1] Length = 261 Score = 141 bits (355), Expect = 8e-32, Method: Composition-based stats. Identities = 42/234 (17%), Positives = 95/234 (40%), Gaps = 16/234 (6%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + ++++D L+ + + S+ L + ++ L Sbjct: 10 LIMIVEDNPLIVEFVEIHLQREKFSVVAATGCTEAVQLLRKHVPGLIILDIVL--DDGNG 67 Query: 61 LELPRIIR---------AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR 111 +L R+IR + VP++ +S + L+ F +G DD + KP E+ R Sbjct: 68 CDLCRLIRTGGSDGEFARIADVPILILSARADEEDRLEGFRAGADDYLTKPFSPAELTFR 127 Query: 112 VAAI-YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + +I R + +S E G +++ R+ V L +E +L L ++ G+ ++ Sbjct: 128 IKSILRRSIGLSIACIEIGALQIDPRRREVYVNHHPVELTPKEFELLHLLASHPGRVFSR 187 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG---FDPVDSKRFLGYSID 221 ++ ++G + V+ H+++LR KL + + ++ GY ++ Sbjct: 188 EELLERVWG-YSYMGNTRTVDVHVNRLRHKLELAGEGSCNNMISTEWGAGYKLE 240 >gi|332638568|ref|ZP_08417431.1| DNA-binding response regulator [Weissella cibaria KACC 11862] Length = 237 Score = 141 bits (355), Expect = 8e-32, Method: Composition-based stats. Identities = 44/231 (19%), Positives = 88/231 (38%), Gaps = 13/231 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + G + S + ++ D+ ++ L G+ + Sbjct: 4 ILVVDDEPSLVTLLSYNLTKSGFEVVTATSGDEARNQLANHPIDLMLLDVML--PGKSGV 61 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILAR 111 +L R +R +++P+I I+ + + G DD V KP RE Sbjct: 62 DLTRELRGEQNRIPIIMITALDDEVDKILGLEIGADDYVTKPFSPREVIARVRAVLRRLD 121 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + K + G + + D + QGE+ L +E +L Y+ G+ + + Sbjct: 122 KQQEPQVAKTPTKLKQFGNLTIDFDKMVVQRQGEIVKLTPKEYELLAYMADREGRVLDRE 181 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 I ++G + +V+ H+S LR K+ + + + R GY D Sbjct: 182 TILHGVWGYDYAGPDTRMVDMHLSHLRDKVEDDPKHPVHLKTVRGFGYRFD 232 >gi|331268289|ref|YP_004394781.1| transcriptional regulatory protein [Clostridium botulinum BKT015925] gi|329124839|gb|AEB74784.1| transcriptional regulatory protein [Clostridium botulinum BKT015925] Length = 236 Score = 141 bits (355), Expect = 8e-32, Method: Composition-based stats. Identities = 50/234 (21%), Positives = 91/234 (38%), Gaps = 15/234 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD + + D + G + + + D++ I+ Sbjct: 4 ILIADDEEEIIELLSLYLEKDNNIIYGAKNGLDAFEIIENNDIDLAIIDIM--MPKIDGY 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L + IR ++P+I +S + + G DD + KP + E++ARV A RR Sbjct: 62 HLVKKIREKYEIPVIMLSAKSEYSDKILGLELGADDYITKPFNAMEVVARVKAQLRRYYK 121 Query: 122 SNNRAETGPIRV-----------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 ++ + + G PL E +I+ YLM + G+ K Sbjct: 122 YHSIGDIVENNNEECLEYGSLKLNNSTCTLYKDGVEIPLTSTEYKIIFYLMNSCGRVFTK 181 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223 QIF ++ ++N + HIS LR K+ N + + + R LGY ++N Sbjct: 182 KQIFEYVWDEP-FYGDDNAIMVHISNLRDKIENDSKNPEYIKTIRGLGYKFNFN 234 >gi|313901323|ref|ZP_07834810.1| response regulator receiver domain protein [Clostridium sp. HGF2] gi|312953931|gb|EFR35612.1| response regulator receiver domain protein [Clostridium sp. HGF2] Length = 233 Score = 141 bits (355), Expect = 8e-32, Method: Composition-based stats. Identities = 32/231 (13%), Positives = 77/231 (33%), Gaps = 14/231 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ L +G + + + + ++ Sbjct: 6 ILVVDDDKEIREIIRVLLTQEGYDVSEARNGREALEYMNDH---IDLYILDIMMPYMDGY 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDV----------VNKPIHHREILAR 111 EL IR HS P++ ++ + + F G DD + + Sbjct: 63 ELCEQIRKHSNAPILFLTAKGTQKDKAQGFFKGADDYLAKPFSYSELLVRVKAMLCRFMV 122 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 ++ + IR+ V+GE + E ++L ++ +R + + Sbjct: 123 YQGKQAEIEKRYRILQIRDIRIEERDEAVYVKGEKIAMTDLEYQLLHFMATHRNQTFSAE 182 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 ++F +++ N + HI +RKK+ + + GY + Sbjct: 183 ELFVSVWNEPYFTSANNTLMVHIRNVRKKIEEDARNPKYIKTIWGKGYRFE 233 >gi|228908282|ref|ZP_04072127.1| Sensor histidine kinase [Bacillus thuringiensis IBL 200] gi|228939674|ref|ZP_04102256.1| Sensor histidine kinase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228965493|ref|ZP_04126579.1| Sensor histidine kinase [Bacillus thuringiensis serovar sotto str. T04001] gi|228972536|ref|ZP_04133142.1| Sensor histidine kinase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228979144|ref|ZP_04139489.1| Sensor histidine kinase [Bacillus thuringiensis Bt407] gi|228780577|gb|EEM28799.1| Sensor histidine kinase [Bacillus thuringiensis Bt407] gi|228787173|gb|EEM35146.1| Sensor histidine kinase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228794223|gb|EEM41741.1| Sensor histidine kinase [Bacillus thuringiensis serovar sotto str. T04001] gi|228820012|gb|EEM66055.1| Sensor histidine kinase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228851323|gb|EEM96132.1| Sensor histidine kinase [Bacillus thuringiensis IBL 200] gi|326940268|gb|AEA16164.1| two-component response regulator vanR [Bacillus thuringiensis serovar chinensis CT-43] Length = 231 Score = 141 bits (355), Expect = 8e-32, Method: Composition-based stats. Identities = 44/230 (19%), Positives = 84/230 (36%), Gaps = 12/230 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD + + ++G ++ + S+ D+ ++ L Sbjct: 5 ILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQKVSTYEVDLMILDIM--MPKRNGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARVA 113 E+ + +R ++ VP++ +S + +G DD + KP + E + Sbjct: 63 EVCQEVRENNTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSF 122 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 K + + + +V GE L E IL L +N G+ + +I Sbjct: 123 QNATSQKNEDGIIRIRSVEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEI 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222 F ++ D V HIS LR KL G + + +GY I+ Sbjct: 183 FERVWNE-DGYGSNKTVMVHISNLRDKLETVMNGEKLIHTVWGVGYKIEK 231 >gi|116617701|ref|YP_818072.1| DNA-binding response regulator [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116096548|gb|ABJ61699.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 230 Score = 141 bits (355), Expect = 8e-32, Method: Composition-based stats. Identities = 38/226 (16%), Positives = 79/226 (34%), Gaps = 12/226 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +G + + + + ++ L + Sbjct: 4 ILVVDDETAIATLLQYNLQQNGYEVTVASDGLSAYQKAKEQQFNAILLDLML--PEMDGM 61 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVA 113 + + +R P+I ++ + + G DD + KP RE++ R Sbjct: 62 TVLKQLRQDKVSTPIILVTAKGDEFDRVLGLELGADDYITKPFSPREVVARLKAVLRRSQ 121 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 K + + + + V L RE +L Y G+ + + I Sbjct: 122 VSTDTNKTDEMVISIQDLLINDSKKTVMKENIVLSLTPREYDLLLYFAQRLGRVIDRETI 181 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218 +A++G ++ E +V+ HIS LR K+ N + + R GY Sbjct: 182 LTAVWG-YEYTGESRMVDMHISNLRDKIESNPKAPKILKTVRGFGY 226 >gi|227878289|ref|ZP_03996251.1| response regulator [Lactobacillus crispatus JV-V01] gi|256844179|ref|ZP_05549666.1| response regulator [Lactobacillus crispatus 125-2-CHN] gi|256850449|ref|ZP_05555876.1| response regulator [Lactobacillus crispatus MV-1A-US] gi|262047895|ref|ZP_06020842.1| response regulator [Lactobacillus crispatus MV-3A-US] gi|312976705|ref|ZP_07788454.1| DNA-binding response regulator [Lactobacillus crispatus CTV-05] gi|227862120|gb|EEJ69677.1| response regulator [Lactobacillus crispatus JV-V01] gi|256614084|gb|EEU19286.1| response regulator [Lactobacillus crispatus 125-2-CHN] gi|256712654|gb|EEU27648.1| response regulator [Lactobacillus crispatus MV-1A-US] gi|260571802|gb|EEX28376.1| response regulator [Lactobacillus crispatus MV-3A-US] gi|310896033|gb|EFQ45098.1| DNA-binding response regulator [Lactobacillus crispatus CTV-05] Length = 239 Score = 141 bits (355), Expect = 8e-32, Method: Composition-based stats. Identities = 46/232 (19%), Positives = 93/232 (40%), Gaps = 14/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D V + + + L + + + ++ L + Sbjct: 8 ILLVEDEESVASFVKTELEFEDYQVVWAEDGKKALDLFTQEKPTLILLDWML--PVYDGM 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARVAA 114 + R IR S VP+I ++ S D G+DD + KP R +L R+ Sbjct: 66 TVLRRIRKQSDVPIIMLTAKNSASDISSALDQGLDDYLTKPFEIEELLARIRVVLRRLEK 125 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + ++ V + E GP+++ + E L +E ++ LM + K ++ ++ Sbjct: 126 MRQQNDVPDTSLEFGPLKIDLLKHEFYCDTEQIYLTPKEFALITELMRDPEKVKSRDELL 185 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY---SIDWN 223 ++G +D + N V+ +I +R K+ N + + R LGY +D N Sbjct: 186 DTVWG-YDFVGQTNTVDVYIRTIRNKIGNPY-KKIIKTMRGLGYCLRKLDDN 235 >gi|237809753|ref|YP_002894193.1| two component transcriptional regulator, winged helix family [Tolumonas auensis DSM 9187] gi|237502014|gb|ACQ94607.1| two component transcriptional regulator, winged helix family [Tolumonas auensis DSM 9187] Length = 241 Score = 141 bits (355), Expect = 8e-32, Method: Composition-based stats. Identities = 47/228 (20%), Positives = 96/228 (42%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++D G + + + L + + ++ L GE L Sbjct: 9 ILVVDDHADIRDLLKRFLEQHGFKVTCARDGKEMKRLLENGHFTLLVLDLML--PGEDGL 66 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R +RA S +P++ ++ + + G DD + KP + RE+LAR+ A+ RR + Sbjct: 67 TLCRDLRARSSLPVVMLTAMGEEMDRIIGLEMGADDYLAKPFNPRELLARIRAVLRRANL 126 Query: 122 SNNRAETGPIRVFSDGRD--------PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + E P R+ D + G L E +L+ + + +++ Q+ Sbjct: 127 MPDSQEELPERLHFDHWQLDLARRELVDEHGVAISLSTAEFDLLKVFLERPKRVLSRDQL 186 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 G +A + +++ +S+LR+KL + + + + GY Sbjct: 187 LDMARGREAQAFD-RAIDTLVSRLRRKLEVDPKKPELIKTVWGGGYMF 233 >gi|223936386|ref|ZP_03628298.1| two component transcriptional regulator, winged helix family [bacterium Ellin514] gi|223894904|gb|EEF61353.1| two component transcriptional regulator, winged helix family [bacterium Ellin514] Length = 226 Score = 141 bits (355), Expect = 8e-32, Method: Composition-based stats. Identities = 51/222 (22%), Positives = 92/222 (41%), Gaps = 6/222 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++I+D + G F ++ + + D+ ++ L E Sbjct: 7 LIIEDDPALLRGLKDNFEAQKYRVQIARDGQEGLGAALNQPPDLVLLDIML--PKMNGYE 64 Query: 63 LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 + R IRA +P+I ++ + + + G DD V KP RE+LAR AA RR K Sbjct: 65 ICRAIRAKRFDMPIIMLTAKGQEEDIIRGLELGADDYVTKPFSIRELLARAAAFLRRRKG 124 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + E G ++ G+ L +E R+LE+ G+ + + QI ++G Sbjct: 125 HAATVFEFGDCKLDLAAHKLYQGGKEIELTTKEFRLLEFFATRPGRALTRDQILDGVWGN 184 Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 D V + V+ ++ LR K+ N + + R +GY + Sbjct: 185 -DIVVNDRSVDRCVTTLRAKIETNPHQPVLIQTIRDVGYRFE 225 >gi|163758090|ref|ZP_02165178.1| DNA-binding response regulator [Hoeflea phototrophica DFL-43] gi|162284379|gb|EDQ34662.1| DNA-binding response regulator [Hoeflea phototrophica DFL-43] Length = 223 Score = 141 bits (355), Expect = 8e-32, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 90/224 (40%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G SL + + D ++ L G Sbjct: 3 LLVVEDDERIWQFLFRGLSAEGYSLTWEANGRAGLETARREQFDAIILDLML--PGMDGR 60 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +RA ++ ++ + + G DD ++KP E+ AR+ + R L Sbjct: 61 EICRRLRAEGVSTKILMLTALETTADLVKGLRMGADDYLSKPFAFDELTARLEVLTRGLP 120 Query: 121 VSNNRAETGPI---RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + ++ + E G L E +LE LM RGK V + +I + Sbjct: 121 ATRQPPHILSAGLLQLDTAAVQSEFDGVPVALTSLEHGLLELLMEERGKVVTRARILKRV 180 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +G D+ NV++ ++ +LR KL++ D + + R GY +D Sbjct: 181 WGT-DQDPLTNVIDVYVRRLRSKLKSAGAPDMITTVRGRGYRLD 223 >gi|158338202|ref|YP_001519379.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] gi|158308443|gb|ABW30060.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] Length = 249 Score = 141 bits (355), Expect = 8e-32, Method: Composition-based stats. Identities = 43/232 (18%), Positives = 97/232 (41%), Gaps = 15/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++ G + + + D+ ++ L Sbjct: 7 ILIVDDEATIRRILATRLSMVGYEIVVAADGVEALEQFEAEKPDLIVLDVM--MPRMNGL 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118 ++ + +R + VP+I ++ + + + G DD + KP +E+ +R+ AI RR Sbjct: 65 QVCQTLRESTGVPIIMLTALGEVSDRIKGLELGADDYLPKPFSPKELESRIQAILRRTVP 124 Query: 119 --------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 E GP+R+ + R + G+ L E +L+ L++ G+ V++ Sbjct: 125 GKGKAGAGHAAEQVIMEIGPLRIETHKRQVYLHGQRIQLTGIEFDVLKLLVSKAGQTVSR 184 Query: 171 TQIFSAIYGLF-DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 + I ++G + + VV+ ++S+LR K+ + + + + +GY Sbjct: 185 SDILQQVWGYSANHYADLRVVDVNVSRLRSKIGDSSKQPEYIHTDWGIGYFF 236 >gi|153952701|ref|YP_001393466.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|219853372|ref|YP_002470494.1| hypothetical protein CKR_0029 [Clostridium kluyveri NBRC 12016] gi|146345582|gb|EDK32118.1| Predicted transcriptional regulator [Clostridium kluyveri DSM 555] gi|219567096|dbj|BAH05080.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 229 Score = 141 bits (355), Expect = 8e-32, Method: Composition-based stats. Identities = 40/227 (17%), Positives = 88/227 (38%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + + +G + ++ + D+ ++ L Sbjct: 4 ILIIEDDLSIAELQKDYLELEGFEVTICTEGVKGLNTLNNNKFDLLILDIML--PKINGY 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R I+ +P++ +S + F G DD + KP E++ARV + + + Sbjct: 62 SILRSIQDKKDIPVLLVSAKKEEIDKIKGFTLGADDYITKPFSPGELVARVKSHIQNYER 121 Query: 122 SNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 ++ + + D R V G+ L ++E IL Y+ N + + ++F Sbjct: 122 IKSKFNLKHNKLIIRGLEILKDSRQVFVNGKEITLAQKEFDILLYMAENPNRVFNREELF 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 I+GL + V HI ++R+K+ +++ GY + Sbjct: 182 EKIWGLG-SMGDNATVTVHIRRIREKIEPYPSKPQYIETVWGAGYRL 227 >gi|26990850|ref|NP_746275.1| winged helix family two component transcriptional regulator [Pseudomonas putida KT2440] gi|24985860|gb|AAN69739.1|AE016610_5 transcriptional regulatory protein KdpE [Pseudomonas putida KT2440] Length = 231 Score = 141 bits (355), Expect = 8e-32, Method: Composition-based stats. Identities = 49/223 (21%), Positives = 93/223 (41%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD ++ G + + + + D+ ++ L Sbjct: 7 LLVIDDEPQIRKFLRISLASQGYKVLEAATGAEGLAQAALGKPDLVVLDLGL--PDMDGQ 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R +R S VP++ +S S +D D G +D V KP +E LARV A+ R++ Sbjct: 65 QVLRELREWSAVPVMVLSVRASEVQKVDALDGGANDYVTKPFGIQEFLARVRALLRQVPQ 124 Query: 122 ---SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 S A GP+ V R + G L R+E +L L + G+ + + Q+ I+ Sbjct: 125 AGGSEVAASFGPLTVDFAFRRVTLDGVEVALTRKEYALLAILAGHPGRVITQQQLLKDIW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 G + + + + LR+KL + + ++ +GY + Sbjct: 185 GPTHAE-DTHYLRIVVGHLRQKLGDDPTAPRFIITEAGVGYRL 226 >gi|161506705|ref|YP_001576655.1| putative response regulator [Lactobacillus helveticus DPC 4571] gi|160347694|gb|ABX26368.1| putative response regulator [Lactobacillus helveticus DPC 4571] Length = 238 Score = 141 bits (355), Expect = 8e-32, Method: Composition-based stats. Identities = 45/229 (19%), Positives = 91/229 (39%), Gaps = 15/229 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G ++ E D+ ++ L + L Sbjct: 5 ILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVDEYDPDLMILDLML--PKKDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R +P+I ++ + + + G DD V KP +RE++ARV A RR + Sbjct: 63 EVAREVRQTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRDI 122 Query: 122 SNNRAETGPIRVFSD-----------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + E G+ L RE +L YL + G+ + + Sbjct: 123 VKKAEAANQDDTDKNIKIGNLVIMPDAYIVEKDGQKIELTHREFELLYYLAQHMGQVMTR 182 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGY 218 + ++G +D + V+ + +LR+K+ + + ++R +GY Sbjct: 183 EHLLQTVWG-YDYFGDVRTVDVTVHRLREKIEDNPIQPQVLVTRRGVGY 230 >gi|329577164|gb|EGG58634.1| transcriptional regulatory protein WalR [Enterococcus faecalis TX1467] Length = 234 Score = 141 bits (355), Expect = 8e-32, Method: Composition-based stats. Identities = 48/232 (20%), Positives = 91/232 (39%), Gaps = 14/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L+DD + D DG +E F + ++ + ++ ++ L Sbjct: 5 ILLVDDEQEIADLLEVYLTSDGYEVEKFYRGKPALESMANNQFVLAVLDVML--PDIDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + R P+I ++ + G DD + KP + E++AR+ RR + Sbjct: 63 QMVKKAREKYFFPIILLTAKIEDIDKITGLTLGADDYITKPFNPLEVVARIKTQLRRFRK 122 Query: 122 SNNR-----------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 N++ + + + ++ GE L E IL YL +G+ V Sbjct: 123 YNSQASLQQETEGTEIDIHGLVINKIHHTSKLYGEDIFLTPLEFSILWYLAERQGEVVPA 182 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 +F I+G N V +HI +LR+KL+ + + +GY ID Sbjct: 183 EILFEEIWGEKYLENNGNTVMAHIGRLREKLKEPPRKPKFIKTVWGVGYKID 234 >gi|296113942|ref|YP_003627880.1| two-component system phosphate regulon response regulator PhoB [Moraxella catarrhalis RH4] gi|295921636|gb|ADG61987.1| two-component system phosphate regulon response regulator PhoB [Moraxella catarrhalis RH4] Length = 256 Score = 141 bits (355), Expect = 8e-32, Method: Composition-based stats. Identities = 38/223 (17%), Positives = 85/223 (38%), Gaps = 5/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG--KGEK 59 ++++D + + + + + D+ ++ + G Sbjct: 31 ILVVEDEPAINELIAGTLDLSDFDVVQAYDTQGAYVAVVDEKPDLILLDWMMPHGESGID 90 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 + A + +P+I ++ + D+GVDD + KP RE+++RV A+ RR Sbjct: 91 FARRLKKNPATADIPIIMLTAKGEEDNKVYGLDAGVDDYITKPFSTRELISRVKAVLRRT 150 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPR--RERRILEYLMANRGKRVAKTQIFSAI 177 + + + + V + E R+L + + + + + QI A+ Sbjct: 151 GIDMGKELMQAGNLSINTASQRVMAGGTEITMSITEYRLLCFFVTHSERAYTRAQILDAV 210 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G + ++E ++ HI +LRK L + + R GY Sbjct: 211 WG-GNVYIDERTIDVHIRRLRKLLAPYGADTLIQTVRGTGYRF 252 >gi|229544295|ref|ZP_04433354.1| two component transcriptional regulator, winged helix family [Bacillus coagulans 36D1] gi|229325434|gb|EEN91110.1| two component transcriptional regulator, winged helix family [Bacillus coagulans 36D1] Length = 227 Score = 141 bits (355), Expect = 8e-32, Method: Composition-based stats. Identities = 51/225 (22%), Positives = 96/225 (42%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + +G ++ DV ++ L L Sbjct: 4 ILLVEDEKNLARFIELELRHEGYEVKVAYDGREGLQSALEEDWDVILLDLML--PKLNGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R + P+I I+ S+ + D G DD + KP E+LAR+ AI+RR++ Sbjct: 62 EVCRRLRQEKETPVIMITARDSIMDRVSGLDHGADDYIVKPFAIEELLARLRAIFRRMEY 121 Query: 122 SNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + F D R + G+ L +RE +L L+ N+ + + + + Sbjct: 122 AEPKKAALTTYKFRDLVLEKESRLVKKAGKTIELTKREYDLLLTLLENKNIVMTREALLN 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G ++ VE NVV+ +I LR K+ + + + R GY + Sbjct: 182 KVWG-YETEVETNVVDVYIRYLRNKIDTEGEDSYIQTVRGTGYVM 225 >gi|229161727|ref|ZP_04289706.1| Two component transcriptional regulator, winged helix [Bacillus cereus R309803] gi|228621694|gb|EEK78541.1| Two component transcriptional regulator, winged helix [Bacillus cereus R309803] Length = 215 Score = 141 bits (355), Expect = 8e-32, Method: Composition-based stats. Identities = 38/220 (17%), Positives = 96/220 (43%), Gaps = 11/220 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++ DD + A F +G + E + + D++ ++ + + Sbjct: 4 LIADDEQDMLKILKAYFEKEGFEVLLAKDGEEALQIFYDEKVDLAILDWM--MPKQSGIA 61 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + I+ +S V ++ ++ + L SG D+ V KP H ++ R ++L Sbjct: 62 VCQEIKKNSSVKVLMLTAKSESEDELAALQSGADEYVKKPFHPGVLITRA----KKLVQH 117 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 ++ + +++ + + E ++++ + ++G + + ++ ++G FD Sbjct: 118 DDVIQVQDVKINFAKNKVFKNDIELEITKTELQLIKCFLQHKGMILTRKKLLDIVWG-FD 176 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 EE V++H+ +LRKK+ + + + R LGYS++ Sbjct: 177 YFGEERTVDTHVRRLRKKIGE----NVIKTHRGLGYSLEE 212 >gi|160931432|ref|ZP_02078828.1| hypothetical protein CLOLEP_00265 [Clostridium leptum DSM 753] gi|156869497|gb|EDO62869.1| hypothetical protein CLOLEP_00265 [Clostridium leptum DSM 753] Length = 223 Score = 141 bits (355), Expect = 8e-32, Method: Composition-based stats. Identities = 45/223 (20%), Positives = 92/223 (41%), Gaps = 8/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++D +G + D+ ++ Sbjct: 4 LLIVDDEERIRDIIKKYAQFEGFETVEAVDGLQAVEICRKESFDLIIMDVM--MPELDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 R IR S P++ +S + F+ G+DD V KP +E++ RV+AI +R Sbjct: 62 SAVREIRKTSSTPVLMLSARGEEYDKIHGFELGIDDYVVKPFSPKELMMRVSAILKRSGG 121 Query: 122 SNNRAETGPI---RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + V GR + G+ + +E + YL+ N+G + + ++ + ++ Sbjct: 122 GEAQRDVVTYGGLTVDFTGRLVYIDGKRVDMTPKEYDLFFYLVKNKGIALTREKLINEVW 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 G +D ++ +++HI LRK L G + + R +GY + Sbjct: 182 G-YDFYGDDRTLDTHIKLLRKSLGEYSGT--ITTLRGVGYRFE 221 >gi|73541504|ref|YP_296024.1| two component heavy metal response transcriptional regulator [Ralstonia eutropha JMP134] gi|72118917|gb|AAZ61180.1| two component heavy metal response transcriptional regulator, winged helix family [Ralstonia eutropha JMP134] Length = 224 Score = 141 bits (355), Expect = 8e-32, Method: Composition-based stats. Identities = 42/221 (19%), Positives = 92/221 (41%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + ++ + + D+ ++ L G Sbjct: 3 ILVVEDEPKTGEYLRKGLTESSFVVDVAVTGGDGLHQATEHEYDLIILDVML--PGMSGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120 ++ R +R P++ ++ ++ + + G DD + KP E+LARV + R Sbjct: 61 DVLRQLRERKDTPVLFLTARDEVEDRVRGLELGGDDYLAKPFAFVELLARVRTLLRRGPV 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 +R E G + + G+ L RE +L +L G+ +++T I S ++ + Sbjct: 121 READRIEIGDLEIDVIRHRVTRAGQRIDLTPREFALLHFLARRHGEVLSRTHIASQVWDM 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + NVV+ I +LR K+ + + S R +GY ++ Sbjct: 181 -NFDSDTNVVDVAIRRLRAKMDDHFAPKLIHSVRGIGYVLE 220 >gi|317128715|ref|YP_004094997.1| two component transcriptional regulator, winged helix family [Bacillus cellulosilyticus DSM 2522] gi|315473663|gb|ADU30266.1| two component transcriptional regulator, winged helix family [Bacillus cellulosilyticus DSM 2522] Length = 234 Score = 141 bits (355), Expect = 8e-32, Method: Composition-based stats. Identities = 50/229 (21%), Positives = 92/229 (40%), Gaps = 12/229 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++ DD V + + + N+ + L S++ D+ ++ E Sbjct: 7 LVADDDPNVCEIISLYLKQNQYDVVEANNGKEAISLFESSKPDIILLDIM--MPDIDGYE 64 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + IR + VP+I ++ + + G DD V KP RE++AR+ AI+RR+ Sbjct: 65 VCKEIRKKANVPIIMLTAKDEELDRVLGLEIGADDYVTKPFSPREVVARIKAIFRRMPAL 124 Query: 123 NNRAETGPIRVFSDGRDP--------EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N T + F+ GE +E +L YL+ N + Q+ Sbjct: 125 TNNTNTNENKDFTFSSFSILVDQREVIAHGEKLFFRPKEFDLLLYLVQNPQIVFTREQLL 184 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 ++G FD A + V+ HI ++R + K + + +GY N Sbjct: 185 QKVWG-FDFAGDVRTVDVHIKRIRDEF-AKHQILCIHTVWGVGYQFHIN 231 >gi|226949656|ref|YP_002804747.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] gi|226844282|gb|ACO86948.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] Length = 235 Score = 141 bits (355), Expect = 8e-32, Method: Composition-based stats. Identities = 38/228 (16%), Positives = 80/228 (35%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + +G + + ++ + Sbjct: 6 ILIVEDDVNINNMIKESLIKEGYDIGQAFHGLEAVEKFQGEDYHMVIMDVM--MPVMDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI--------HHREILARVA 113 E R IR S+VP+I +S + G DD + KP I + Sbjct: 64 EAMRRIREKSKVPIIILSAKGEDSDKIIGLGMGADDYIVKPFSVPELIARVKCNIRRAIY 123 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + N E G ++ + G+ L +E +IL+ N + K QI Sbjct: 124 YNETKSIKENKIHEYGDVKFDMNNYTVTKGGKELTLTAKEMKILKLFFENPNRVFTKVQI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 + +++G + + N V H+ +LR K+ + +++ +GY + Sbjct: 184 YDSVWGE-EFLSDYNTVTVHMRRLRSKIEDDPNNPKLIETVWGIGYKL 230 >gi|300822262|ref|ZP_07102403.1| transcriptional activator protein Irlr [Escherichia coli MS 119-7] gi|300525145|gb|EFK46214.1| transcriptional activator protein Irlr [Escherichia coli MS 119-7] gi|323936954|gb|EGB33235.1| heavy metal response regulator [Escherichia coli E1520] Length = 260 Score = 140 bits (354), Expect = 9e-32, Method: Composition-based stats. Identities = 50/219 (22%), Positives = 97/219 (44%), Gaps = 3/219 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D ++ + G ++ + +L + ++ L G Sbjct: 40 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIML--PGMDGW 97 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + +R Q P+I ++ S+ + DSG +D + KP E+LARV A R+ Sbjct: 98 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 157 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 N+ E +R+ S + L R+E ++L L + G+ + +T I S I+G+ Sbjct: 158 LNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 216 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + N V+ I +LR K+ + + + R +GYS Sbjct: 217 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 255 >gi|304317628|ref|YP_003852773.1| transcriptional regulator [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302779130|gb|ADL69689.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 225 Score = 140 bits (354), Expect = 9e-32, Method: Composition-based stats. Identities = 52/224 (23%), Positives = 95/224 (42%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD ++ G +G S++ E S D+ ++ L L Sbjct: 4 ILIIDDEEMLVKGLRLSLIQEGYSVDYAYDGEEGLEKIKSGNFDLVILDLML--PKIDGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L + +R+ S +P+I ++ + + G DD + KP + RE++AR+ A++RR Sbjct: 62 TLCKEVRSFSNIPIIMLTAKGEDVDKIVGIEMGADDYLAKPFNTRELIARIRALFRRTTS 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF----PLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + P+ + L +E +L L +N GK +K ++ I Sbjct: 122 PFVKKHDIIKIGDITINIPDKIVQKNGKEIDLTNKEFDLLVLLASNPGKLYSKDKLMDLI 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 +G FD + N V HI KLR+K+ + + +K GY + Sbjct: 182 WG-FDFYGDTNTVNVHIRKLREKIEDDPANPKHIFTKWGSGYYM 224 >gi|182413226|ref|YP_001818292.1| two component transcriptional regulator [Opitutus terrae PB90-1] gi|177840440|gb|ACB74692.1| two component transcriptional regulator, winged helix family [Opitutus terrae PB90-1] Length = 265 Score = 140 bits (354), Expect = 9e-32, Method: Composition-based stats. Identities = 45/221 (20%), Positives = 90/221 (40%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D V + + + + + + D ++ L L Sbjct: 47 ILVVEDERRVGQFVEKALTEQNYTARLVRTCAEARDVLAESTFDAVVLDLGL--PDGDGL 104 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +L R RA P++ +S ++ + + G DD + KP E++ARV ++ RR Sbjct: 105 DLLREWRASGFNEPVLVLSARDAVGDRVRGLNMGADDYLPKPFSVDEVVARVRSLLRRHA 164 Query: 121 VSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 GP+R+ GR G L RE +LE + N + + +T I ++ Sbjct: 165 GVKTTVLTHGPVRMDLLGRSVTCAGRPVELTSREYALLELFLQNPRRVLTRTLIAEKVW- 223 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +E N+++ ++ +LR+KL + + R GY + Sbjct: 224 EASYDLETNLIDVYVRRLRQKLEAPGQPPLIKTIRGTGYQL 264 >gi|169350204|ref|ZP_02867142.1| hypothetical protein CLOSPI_00948 [Clostridium spiroforme DSM 1552] gi|169292987|gb|EDS75120.1| hypothetical protein CLOSPI_00948 [Clostridium spiroforme DSM 1552] Length = 223 Score = 140 bits (354), Expect = 9e-32, Method: Composition-based stats. Identities = 46/221 (20%), Positives = 97/221 (43%), Gaps = 5/221 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD +++ +G + ++ E + + D+ I+ E Sbjct: 6 LVVDDEKDIRELIGFYLNKEGFEMLEASNGEEALDIFENEYVDLGIIDVM--MPVMDGFE 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L ++ +P+I ++ + L F GVDD V KP E++ARV A+ +R V+ Sbjct: 64 LVENLKEFKDIPVIMLTAKGESKDKLRGFSVGVDDYVVKPFDPTELMARVKAVLKRYSVN 123 Query: 123 NNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + + + E+ LP ++ ++ L + + ++ Q+ I+G+ Sbjct: 124 TSNIIKLNDVEFDGEKYEIRYHDEIIHLPLKQFELVFELAKHPDQIFSREQLIEKIWGM- 182 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 D + V+ HI ++R+ L + GF V + R LGY ++ Sbjct: 183 DYDGFDRTVDVHIKRIRENLGHLPGFK-VVTVRGLGYKVEV 222 >gi|49480400|ref|YP_039253.1| DNA-binding response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49331956|gb|AAT62602.1| DNA-binding response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 223 Score = 140 bits (354), Expect = 9e-32, Method: Composition-based stats. Identities = 41/226 (18%), Positives = 88/226 (38%), Gaps = 12/226 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +++ +G + + DV ++ L Sbjct: 3 ILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEG-PDVLILDVML--PDTDGY 59 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL R+ R +P++ ++ + L G DD V KP ++ E++ RV + RR+K Sbjct: 60 ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRVK 119 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEV-----FPLPRRERRILEYLMANRGKRVAKTQIFS 175 I P+ + L RE + + ++N + + ++ Sbjct: 120 KKEVTVSHEVIEAGEITICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 179 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G F+ V+ + +LRKKL + + + + +GY +D Sbjct: 180 KVWG-FEYIGNTRAVDIMVQRLRKKLGDSG--EYIKTIYGVGYKLD 222 >gi|300703822|ref|YP_003745424.1| DNA-binding response regulator in two-component regulatory system with phor [Ralstonia solanacearum CFBP2957] gi|299071485|emb|CBJ42807.1| DNA-binding response regulator in two-component regulatory system with phoR [Ralstonia solanacearum CFBP2957] Length = 237 Score = 140 bits (354), Expect = 9e-32, Method: Composition-based stats. Identities = 45/231 (19%), Positives = 83/231 (35%), Gaps = 10/231 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++++D + + G + E L S D+ ++ L G G Sbjct: 5 ILVVEDEPAIAELIAVNLQHAGHYPIRAYNAEQALSLMSDVLPDLVLLDWMLPGKSGVMF 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112 + R Q+P+I ++ Q + D G DD V KP +E + R Sbjct: 65 AKELRANERTRQIPIIMLTARSEEQDKIMGLDVGADDYVTKPFSPKELLARIKAVLRRRA 124 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + N + L E R+L +LM + + +++Q Sbjct: 125 PQLTDDVVAINGLRLDPATHRVTALNSESENPIKLDLGPTEFRLLHFLMTHPERVHSRSQ 184 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 + ++G VEE V+ HI +LR L + +++ R GY + N Sbjct: 185 LLDQVWGDH-VFVEERTVDVHIKRLRAALAPGGYSNMIETVRGSGYRLARN 234 >gi|228912002|ref|ZP_04075727.1| Two-component response regulator [Bacillus thuringiensis IBL 200] gi|228847657|gb|EEM92586.1| Two-component response regulator [Bacillus thuringiensis IBL 200] Length = 228 Score = 140 bits (354), Expect = 9e-32, Method: Composition-based stats. Identities = 50/227 (22%), Positives = 94/227 (41%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ ++G+ + L D+ ++ + Sbjct: 5 ILIVDDDKEIRNLISVYLENEGLKTQKVEDAMEALQLLEEKEFDLIILDIM--MPNMDGI 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E IR +P+I +S + SG DD ++KP + E++ARV + RR K Sbjct: 63 EACMKIREDRNIPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 122 Query: 122 SNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N+ E V +D R ++G+ L +E ILE L N+G ++ +I+ Sbjct: 123 YNSSIEHNKSILEIGDLTVNTDTRQVWIRGKETRLTPKEFAILELLARNKGIVLSVAKIY 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220 A++ +N V HI+K+R K+ + + +GY I Sbjct: 183 EAVWEEV-FYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGYKI 228 >gi|167747978|ref|ZP_02420105.1| hypothetical protein ANACAC_02710 [Anaerostipes caccae DSM 14662] gi|317472474|ref|ZP_07931796.1| response regulator receiver domain-containing protein [Anaerostipes sp. 3_2_56FAA] gi|167652628|gb|EDR96757.1| hypothetical protein ANACAC_02710 [Anaerostipes caccae DSM 14662] gi|316900047|gb|EFV22039.1| response regulator receiver domain-containing protein [Anaerostipes sp. 3_2_56FAA] Length = 225 Score = 140 bits (354), Expect = 9e-32, Method: Composition-based stats. Identities = 56/229 (24%), Positives = 102/229 (44%), Gaps = 11/229 (4%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSL-EFEEWLQSSAREDVSAIEAFLIGKGEK 59 M +++D A +++ I G G+ S F + L + ++ ++ L GE Sbjct: 1 MIYIVEDDANIRELVIYTLQSTGFDAGGYESGISFFKDLSAGKIPELVLLDIML--PGED 58 Query: 60 VLELPRII---RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 + + R I +P+I ++ + + DSG DD + KP E+++R+ A+ Sbjct: 59 GISILRKIRSNPETKHIPVIMMTAKGAEYDKVLGLDSGADDYITKPFGMMELVSRIKAVL 118 Query: 117 RRLKVSNNRAETGPIRVFSD--GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 RR+K E ++ GE L +E R+L LM ++G + + Q+ Sbjct: 119 RRVKKEEPTEELSAGNLYIHVGKHKVLADGEKVELTYKEFRLLCMLMESKGNVLTRDQLL 178 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 + I+G +D E V+ HI LR+KL +++ R +GY I N Sbjct: 179 TNIWG-YDFDGETRTVDVHIRTLRQKLGECGS--MIETVRGIGYRIGGN 224 >gi|153003289|ref|YP_001377614.1| two component transcriptional regulator [Anaeromyxobacter sp. Fw109-5] gi|152026862|gb|ABS24630.1| two component transcriptional regulator, winged helix family [Anaeromyxobacter sp. Fw109-5] Length = 231 Score = 140 bits (354), Expect = 9e-32, Method: Composition-based stats. Identities = 53/225 (23%), Positives = 87/225 (38%), Gaps = 12/225 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L+DD + G + E D+ ++ L E Sbjct: 5 LLVDDERDLLSLLDFNLRAAGFETLLATTGEQALVQLRRRIPDLVVLDLML--PDVSGTE 62 Query: 63 LPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAI 115 + R I+A VP++ ++ + F+ G DD V KP R + A Sbjct: 63 VCRQIKADARTRHVPVVMLTAKGEEVDRVVGFEVGADDYVTKPFSVRELVLRLKALARRT 122 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + GPIRV D V GE L E R+L LMA G+ ++ Q+ Sbjct: 123 GAGRPAERPPEQVGPIRVDVDAHRAFVDGEEVQLTPLEFRLLTMLMARLGRVQSREQLLE 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ VE V++H+ +LR+KL G D +++ R +GY + Sbjct: 183 DVW-EMSSEVETRTVDTHVKRLREKLG--SGRDLLETVRGIGYRL 224 >gi|160900345|ref|YP_001565927.1| two component transcriptional regulator [Delftia acidovorans SPH-1] gi|160365929|gb|ABX37542.1| two component transcriptional regulator, winged helix family [Delftia acidovorans SPH-1] Length = 231 Score = 140 bits (354), Expect = 9e-32, Method: Composition-based stats. Identities = 43/225 (19%), Positives = 91/225 (40%), Gaps = 10/225 (4%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 M ++++D + + +G + + DV ++ L G Sbjct: 6 MVLIVEDEPAIAELIAVNLRHNGFQPVWAEDGVTAQRELDAVLPDVILLDWML--PGASG 63 Query: 61 LELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAI 115 L L R RA S+ P++ ++ + D+G DD + KP +E+ R Sbjct: 64 LSLARKWRADSRTKAVPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIRAVLR 123 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 R + ++ G + + + QG++ + E ++L YLM + + ++ Q+ Sbjct: 124 RRAPEQIQDKVNIGELVLDAAAHRVSWQGDMIKVGPTEFKLLHYLMKHPERVHSRAQLLD 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G +EE V+ H+ +LR+ L +++ R GY + Sbjct: 184 KVWGDH-VFIEERTVDVHVKRLREALGMAGA--LIETVRGAGYRL 225 >gi|125974418|ref|YP_001038328.1| two component transcriptional regulator [Clostridium thermocellum ATCC 27405] gi|256005869|ref|ZP_05430817.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 2360] gi|281418944|ref|ZP_06249962.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum JW20] gi|125714643|gb|ABN53135.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum ATCC 27405] gi|255990173|gb|EEU00307.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 2360] gi|281407401|gb|EFB37661.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum JW20] gi|316941557|gb|ADU75591.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 1313] Length = 228 Score = 140 bits (354), Expect = 9e-32, Method: Composition-based stats. Identities = 38/223 (17%), Positives = 89/223 (39%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G + + + L + +V ++ L Sbjct: 5 ILIVEDENDIGSFMVRTLNRKGFNAIRAETGKEALRLVELEKPEVILLDIML--PDIDGF 62 Query: 62 ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118 E+ + + R H ++ +I ++ + + G DD + KP + E+ + Sbjct: 63 EICKRVSRQHPEISIIMVTARGEDVDKIRGLELGADDYIIKPFNPMELIARIKAVIRRTN 122 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++N GP+R+ + R G V L RE +L+ + N K + + +I + ++ Sbjct: 123 KPDNSNEVVIGPLRIDYNCRQVYKNGVVLDLTPREFCLLKVFVNNLNKALTRDEILNWVW 182 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 G D + V+ H+ +LR+K+ + +++ GY Sbjct: 183 GE-DYIGDTKTVDVHVRRLREKIEDDPSHPKYIETVWGKGYLF 224 >gi|160945120|ref|ZP_02092346.1| hypothetical protein FAEPRAM212_02639 [Faecalibacterium prausnitzii M21/2] gi|158442851|gb|EDP19856.1| hypothetical protein FAEPRAM212_02639 [Faecalibacterium prausnitzii M21/2] Length = 228 Score = 140 bits (354), Expect = 9e-32, Method: Composition-based stats. Identities = 50/225 (22%), Positives = 92/225 (40%), Gaps = 10/225 (4%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 M +++D A +++ +G ++GF S E +A ++ ++ L GE Sbjct: 1 MIYIVEDDASIRELEQYALQSNGYEVQGFESAEPFWQAMRTAEPELVILDVML--PGEDG 58 Query: 61 LELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVV--NKPIHHREILARVAAI 115 + + +R ++P+I ++ S T+ D G DD + I RVA Sbjct: 59 FSILKKLRNTPSLRRLPIIMVTAKSSELDTVRGLDCGADDYIAKPFGIMEFLSRVRVALR 118 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 +V + I++ + V L +E +L L+ N V + I Sbjct: 119 RSAPEVRPDVLAFHEIQLDNARHSVTVNSTPVELTYKEYCLLRLLLENTSLVVTRETILQ 178 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G D +VE V+ HI LRKKL + + + R +GY + Sbjct: 179 VVWGT-DISVESRTVDMHIRTLRKKLGDAG--RYICTVRKVGYKL 220 >gi|158339459|ref|YP_001520636.1| two component transcriptional regulator [Acaryochloris marina MBIC11017] gi|158309700|gb|ABW31317.1| two component transcriptional regulator, winged helix family [Acaryochloris marina MBIC11017] Length = 222 Score = 140 bits (354), Expect = 9e-32, Method: Composition-based stats. Identities = 45/224 (20%), Positives = 89/224 (39%), Gaps = 12/224 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ +D + G + + S ++ ++ L G L Sbjct: 4 ILIAEDEPRIASFIEKGLKSHGYATTTVENAHEALSFALSDGFELLILDLGL--PGRDGL 61 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118 E+ +R S +P+I ++ +Q + + G DD + KP E+LARV R Sbjct: 62 EVLADLRGQGSVLPVIILTARDDIQDKISGLEGGADDYMTKPFRFEELLARVRVRLRTVS 121 Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + R +V + LP RE + E + G+ +++ Q+ Sbjct: 122 IGTPPETMTMTAHNVVLDLRTRKAKVDDQWIELPAREFILAETFFRHPGQVLSRQQLLDR 181 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G +D N+V+ ++ LRKKL N +++ R +GY + Sbjct: 182 VWG-YDYDPGSNIVDVYVGYLRKKLGNS----LIETVRGVGYRL 220 >gi|291525698|emb|CBK91285.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium rectale DSM 17629] gi|291528177|emb|CBK93763.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium rectale M104/1] Length = 232 Score = 140 bits (354), Expect = 9e-32, Method: Composition-based stats. Identities = 45/232 (19%), Positives = 92/232 (39%), Gaps = 14/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D +++ L + G +E + E S + ++ + Sbjct: 4 LLIIEDDVTIRNALRILLENQGYFIEEAHDGEEGLQKFDST---FDLLIIDIMMPNISGI 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R IR S VP++ ++ ++ +G DD + KP + E++AR+ A+ RR +V Sbjct: 61 DVCRKIREKSYVPILFLTAKSLETDKMEALSAGGDDYLVKPFSYVELIARIQALIRRCRV 120 Query: 122 SNN----------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 +N E + + + + G L +E +IL L+++ K + Sbjct: 121 YDNADASDTTASSTIERCGLTLDTKCNNVSYDGRQLALTDKEYQILLLLISHPTKTFSTQ 180 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222 IF +++ N + HI LR KL + + GY + Sbjct: 181 NIFESVWNEPYTQFSNNTIMVHIKNLRNKLEAGCGCAHLIKTVWGKGYKFEE 232 >gi|241895394|ref|ZP_04782690.1| response regulator [Weissella paramesenteroides ATCC 33313] gi|241871368|gb|EER75119.1| response regulator [Weissella paramesenteroides ATCC 33313] Length = 233 Score = 140 bits (354), Expect = 9e-32, Method: Composition-based stats. Identities = 38/226 (16%), Positives = 89/226 (39%), Gaps = 5/226 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + D + + + + L ++++ I + Sbjct: 5 ILLVEDEEGLADSLKTELELEDMVVIWAKDGQEALDLFHEHEQELNLIILDWMLPKLDGF 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118 + R IR HSQ+P+I ++ + + G DD + KP E + ++ Sbjct: 65 SVLRRIRKHSQMPVIMLTARDYIGDKVAGLTGGADDYMTKPFEVEELLARIEVSLRHSQK 124 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 G + V + + ++ PL +RE +L L+ N + ++ + ++ Sbjct: 125 TDHQAKIYTVGDLTVDTTTKRVSRHNKIIPLTQREYELLVVLVMNEDEACSRDGLLDEVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223 G+ D + N+++ ++ LR K+ + + + R +GY + N Sbjct: 185 GV-DFEGQPNILDVYVRNLRSKIDADPSNQKLIHTVRGVGYMLSQN 229 >gi|251795759|ref|YP_003010490.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247543385|gb|ACT00404.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 225 Score = 140 bits (354), Expect = 9e-32, Method: Composition-based stats. Identities = 46/222 (20%), Positives = 91/222 (40%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD + + +G + + + D++ ++ L L Sbjct: 4 LLITDDDSNTRTLLGHYLTREGYRVLEAQNGLEAIAVLEKQPVDLAILDVMLPI--VDGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R + +P+I ++ L + SG DD V KP EIL RV A++RR + Sbjct: 62 TLCEFTRKNYDIPIILLTARDQLSDKEQGYLSGTDDYVTKPFELPEILYRVKALFRRYSL 121 Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 +++ + + + EV LP +E +L L G+ ++ ++ I+G Sbjct: 122 ASSDKIRLNQLIIDRKNYEIVDGEEVQMLPLKEFELLAQLAEYPGRVFSRDELIRIIWGT 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 D +E ++ HI +LRK+ + + R +GY ++ Sbjct: 182 -DYNGDERTIDVHIKRLRKRFPETERGFVIHTIRGIGYKLEV 222 >gi|312795607|ref|YP_004028529.1| phosphate regulon transcriptional regulatory protein phoB [Burkholderia rhizoxinica HKI 454] gi|312167382|emb|CBW74385.1| Phosphate regulon transcriptional regulatory protein phoB [Burkholderia rhizoxinica HKI 454] Length = 256 Score = 140 bits (354), Expect = 9e-32, Method: Composition-based stats. Identities = 46/226 (20%), Positives = 84/226 (37%), Gaps = 8/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++I+D + + G + E + L S D+ ++ L G G Sbjct: 28 ILVIEDEPAISELIAVNLQHAGHCPIRAYNAEQAQRLISDVLPDLVLLDWMLPGKSGVAF 87 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 R +P+I ++ Q + + G DD V KP +E++AR+ A+ RR Sbjct: 88 ARELRSNERTKHIPIIMLTARGEEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRRRA 147 Query: 121 VSNNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + L E R+L + M + + ++TQ+ Sbjct: 148 PQLTEDSVSINGLRLDPATHRVAASRNGEQTQLDLGPTEFRLLHFFMTHPERVHSRTQLL 207 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G VEE V+ HI +LR L+ +++ R GY + Sbjct: 208 DQVWGDH-VFVEERTVDVHIKRLRAALKPAGCDAMIETVRGSGYRL 252 >gi|229005191|ref|ZP_04162911.1| Sensor histidine kinase [Bacillus mycoides Rock1-4] gi|228756051|gb|EEM05376.1| Sensor histidine kinase [Bacillus mycoides Rock1-4] Length = 231 Score = 140 bits (354), Expect = 9e-32, Method: Composition-based stats. Identities = 44/229 (19%), Positives = 86/229 (37%), Gaps = 11/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD + + ++G + + + S + D+ ++ L Sbjct: 6 ILIIDDDKEIVELLAVYLRNEGYCIYKAYDGDEALHMLSLHQIDLMILDIM--MPKRNGL 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAA 114 E+ + +R + VP++ +S + +G DD + KP + E++ R + Sbjct: 64 EVCQQVREENTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELIARVKALLRRSSF 123 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + + +V GE L E IL L +N G+ + +IF Sbjct: 124 QQVTSLNDDGIIRIRSVEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEIF 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 ++ D V HIS LR+KL G + + +GY I+ Sbjct: 184 ERVWNE-DGYGSNKTVMVHISNLREKLETGTNGEKLIHTVWGVGYKIEK 231 >gi|218294733|ref|ZP_03495587.1| two component transcriptional regulator, winged helix family [Thermus aquaticus Y51MC23] gi|218244641|gb|EED11165.1| two component transcriptional regulator, winged helix family [Thermus aquaticus Y51MC23] Length = 224 Score = 140 bits (354), Expect = 9e-32, Method: Composition-based stats. Identities = 38/221 (17%), Positives = 82/221 (37%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEW-LQSSAREDVSAIEAFLIGKGEKV 60 +L++D V + +G+ + S + R D+ ++ L + Sbjct: 4 ILLVEDDPQVGELVRRYLEKEGMEVFWARSGGEALGRVFEGERPDLVVLDRGL--PDMEG 61 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ + +R + + + + + + D + L R Sbjct: 62 LEVLKELRELDPLLPVLLLTGRADEDSRVEGLLEGADDYLGKPFSLKELLARIKALLRRA 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 R GP+ + + R ++GE L E +L L+ G+ + ++ ++G Sbjct: 122 GKEGRRRFGPLELDLEARQAFLEGEPLKLSPTEMNLLLTLVQAPGRVYTREELLERVWG- 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 D E VV+++I LRKKL++ +++ +GY Sbjct: 181 PDFPGSERVVDAYIRLLRKKLKDDAQAPRFIETVVGMGYRF 221 >gi|170760898|ref|YP_001785689.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] gi|169407887|gb|ACA56298.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] Length = 228 Score = 140 bits (354), Expect = 9e-32, Method: Composition-based stats. Identities = 32/224 (14%), Positives = 83/224 (37%), Gaps = 9/224 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++ + + + E + +V ++ L G L Sbjct: 4 ILIVEDEISIRGFVKVNLKMNNFDVIEAETGEEGIEKARKHKPEVVVLDIML--PGVDGL 61 Query: 62 ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH----REILARVAAIY 116 E+ + + + + +I ++ + + G DD + KP + I A + + Sbjct: 62 EVCKTLRQEFPNMGIIMLTAKSQDIDKVSGLEYGADDYIIKPFNPLELTLRIKAILRRVN 121 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + +N GP ++ + E + E +++ + N GK + ++ Sbjct: 122 AVKESDDNIITGGPFKIDLYSKKIYKNEEEIDITPTEYLLMKIFIENPGKAFNRDELLDL 181 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYS 219 ++G +D + +V+ +I +LR K+ + + GY Sbjct: 182 VWG-YDFMGDSKIVDVNIRRLRSKIEETPSEPKFIKTVWGTGYR 224 >gi|160880986|ref|YP_001559954.1| two component transcriptional regulator [Clostridium phytofermentans ISDg] gi|160429652|gb|ABX43215.1| two component transcriptional regulator, winged helix family [Clostridium phytofermentans ISDg] Length = 224 Score = 140 bits (354), Expect = 9e-32, Method: Composition-based stats. Identities = 42/221 (19%), Positives = 99/221 (44%), Gaps = 5/221 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + ++ + + E + + D+S I ++ + Sbjct: 7 LVVDDESRMRKLVKDFLSRSNYDVLEAENGEQAVDIFFEQK-DISLIILDVMMPKMDGWQ 65 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-HHREILARVAAIYRRLKV 121 + + IR +S+VP+I ++ + L F+ GVD+ ++KP + A + R ++ Sbjct: 66 VCKEIRKYSKVPIIMLTAKSDEKDELLGFELGVDEYISKPFSPKILVARVEAIVRRSIQT 125 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + E G I + + ++ L +E +L Y + NRG +++ +I + ++ + Sbjct: 126 LDETMEIGGIVIDKAAHEVKIDDLAIELSVKEFELLTYFITNRGVALSREKILNNVW-NY 184 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 D + +++H+ KLR K+ +K D + + +GY + Sbjct: 185 DYFGDARTIDTHVKKLRSKMGDKG--DYIKTIWGMGYKFEV 223 >gi|227894008|ref|ZP_04011813.1| response regulator [Lactobacillus ultunensis DSM 16047] gi|227864209|gb|EEJ71630.1| response regulator [Lactobacillus ultunensis DSM 16047] Length = 239 Score = 140 bits (354), Expect = 9e-32, Method: Composition-based stats. Identities = 40/227 (17%), Positives = 90/227 (39%), Gaps = 9/227 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + ++G S + ++ D++ + ++ + Sbjct: 14 ILVVDDDKEIVELLSIYLKNEGYEPIAAYSGKEAITKLTTT-PDIALMILDVMMPNMSGI 72 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------AI 115 E+ + +R S +P+I +S + +G DD V+KP + E++ARV Sbjct: 73 EVIKEVRKDSDIPIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRRSQK 132 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + + + + G+ L E IL L ++ + + +IF Sbjct: 133 QVKDEKPDILEVGPLVINRDSHEVKTIDGKDIQLTALEFGILYLLASHPNRVFSADEIFE 192 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221 ++ + V V H+S LR K++ G D + + +GY ++ Sbjct: 193 RVW-QQESIVSAKTVMVHVSHLRDKIQKATGGEDVIQTVWGVGYKVE 238 >gi|206971770|ref|ZP_03232719.1| transcriptional regulatory protein ResD [Bacillus cereus AH1134] gi|218897743|ref|YP_002446154.1| transcriptional regulatory protein ResD [Bacillus cereus G9842] gi|229179004|ref|ZP_04306361.1| Two-component response regulator vanRB [Bacillus cereus 172560W] gi|206733155|gb|EDZ50328.1| transcriptional regulatory protein ResD [Bacillus cereus AH1134] gi|218541190|gb|ACK93584.1| transcriptional regulatory protein ResD [Bacillus cereus G9842] gi|228604372|gb|EEK61836.1| Two-component response regulator vanRB [Bacillus cereus 172560W] gi|326940485|gb|AEA16381.1| two-component response regulator VanRB [Bacillus thuringiensis serovar chinensis CT-43] Length = 221 Score = 140 bits (354), Expect = 9e-32, Method: Composition-based stats. Identities = 47/223 (21%), Positives = 91/223 (40%), Gaps = 9/223 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D +++ ++ + + D+ ++ Sbjct: 6 ILVVEDDQEIQELIKQFLMTQHYTVVVASDGLEGMTQFNKQSFDLILLDVM--MPNLNGF 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119 E+ ++IR+ S VP+I ++ + + FD G+DD + KP ++ RV A Sbjct: 64 EVSKMIRSQSNVPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSYD 123 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 K NN +R+ D V L +E IL+ L N K + + I ++G Sbjct: 124 KNVNNHLIFKEVRIDVDAYRVYVNDVEIILTTKEFEILQLLFQNERKVLTRENIVEKVWG 183 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D E ++++HI LRKKL + + + +GY ID Sbjct: 184 -YDYFGETRIIDTHIKNLRKKL----AIPYIKTIKGIGYKIDE 221 >gi|120404638|ref|YP_954467.1| two component transcriptional regulator [Mycobacterium vanbaalenii PYR-1] gi|119957456|gb|ABM14461.1| two component transcriptional regulator, winged helix family [Mycobacterium vanbaalenii PYR-1] Length = 246 Score = 140 bits (354), Expect = 9e-32, Method: Composition-based stats. Identities = 51/231 (22%), Positives = 93/231 (40%), Gaps = 16/231 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + + + + +S DV ++ L G +E Sbjct: 15 LVVDDEVPLAEVVASYLRREQFDVSLAHSGADALAQAREIDPDVVILDLAL--PGIDGVE 72 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120 + R +R S ++ ++ + T+ G DD V KP RE++AR+ A+ RR + Sbjct: 73 VCRQLRTFSDAYVVMLTARDTEMDTIVGLSVGADDYVTKPFSPRELVARIRAMLRRPRTV 132 Query: 121 ----------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 GP+ + GR + E L R E IL L + ++ Sbjct: 133 ATPISAATAADEPPPRAFGPLAIDVAGRQVFIDDEPVLLTRTEFDILAALSSRPAVVFSR 192 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220 Q+ A++G E++V+ HI LR+KL + V + R +GY + Sbjct: 193 RQLLEAVWGDS-WGGNEHLVDVHIGHLRRKLADDPADPRYVITVRGVGYRM 242 >gi|15600553|ref|NP_254047.1| two-component response regulator PhoB [Pseudomonas aeruginosa PAO1] gi|116053507|ref|YP_793834.1| two-component response regulator PhoB [Pseudomonas aeruginosa UCBPP-PA14] gi|152987707|ref|YP_001351454.1| two-component response regulator PhoB [Pseudomonas aeruginosa PA7] gi|218894463|ref|YP_002443333.1| two-component response regulator PhoB [Pseudomonas aeruginosa LESB58] gi|254237949|ref|ZP_04931272.1| two-component response regulator PhoB [Pseudomonas aeruginosa C3719] gi|254243755|ref|ZP_04937077.1| two-component response regulator PhoB [Pseudomonas aeruginosa 2192] gi|296392220|ref|ZP_06881695.1| two-component response regulator PhoB [Pseudomonas aeruginosa PAb1] gi|313106787|ref|ZP_07793002.1| two-component response regulator PhoB [Pseudomonas aeruginosa 39016] gi|12230950|sp|P23620|PHOB_PSEAE RecName: Full=Phosphate regulon transcriptional regulatory protein phoB gi|9951681|gb|AAG08745.1|AE004948_1 two-component response regulator PhoB [Pseudomonas aeruginosa PAO1] gi|115588728|gb|ABJ14743.1| two-component response regulator PhoB [Pseudomonas aeruginosa UCBPP-PA14] gi|126169880|gb|EAZ55391.1| two-component response regulator PhoB [Pseudomonas aeruginosa C3719] gi|126197133|gb|EAZ61196.1| two-component response regulator PhoB [Pseudomonas aeruginosa 2192] gi|150962865|gb|ABR84890.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas aeruginosa PA7] gi|218774692|emb|CAW30509.1| two-component response regulator PhoB [Pseudomonas aeruginosa LESB58] gi|310879504|gb|EFQ38098.1| two-component response regulator PhoB [Pseudomonas aeruginosa 39016] Length = 229 Score = 140 bits (354), Expect = 9e-32, Method: Composition-based stats. Identities = 46/224 (20%), Positives = 94/224 (41%), Gaps = 9/224 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A +++ G + + + + D+ ++ L G + Sbjct: 6 ILIVDDEAPIREMIAVALEMAGYECLEAENTQQAHAVIVDRKPDLILLDWML--PGTSGI 63 Query: 62 ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 EL R ++ +P+I ++ + + G DD + KP RE++AR+ A+ RR Sbjct: 64 ELARRLKRDELTVDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123 Query: 119 LKVSNNRAETGPIR--VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 ++ A + + G+ + E R+L++ M ++ + + Q+ Sbjct: 124 TGPGDSEAPIEVGGLLLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAYTRGQLLDQ 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + VEE V+ HI +LRK L + V + R GY Sbjct: 184 VWG-GNVYVEERTVDVHIRRLRKALGEVYE-NLVQTVRGTGYRF 225 >gi|119716238|ref|YP_923203.1| response regulator receiver [Nocardioides sp. JS614] gi|119536899|gb|ABL81516.1| response regulator receiver [Nocardioides sp. JS614] Length = 223 Score = 140 bits (354), Expect = 9e-32, Method: Composition-based stats. Identities = 50/226 (22%), Positives = 92/226 (40%), Gaps = 13/226 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + DG L D+ ++ L G Sbjct: 4 ILIVEDEERIASFLAKGLRADGHVTTCVADGREGLDLALGGDVDLVVLDIGL--PGMDGF 61 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ +R S VP+I ++ S+ T+ + G DD + KP E+LARV R+ Sbjct: 62 EVLDQLRSQGSTVPVIVLTARDSVGDTVSALEGGADDYMPKPFRFAELLARVRLRLRQSA 121 Query: 121 V-----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + ++G +++ R V+ L RE + E M N G+ +++ Q+ Sbjct: 122 DAGGASREDVLQSGRVKLDVRTRRAVVEDRQVDLSAREFSLAEIFMVNAGQVLSREQLLD 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G+ D NVV+ ++ LRKKL + + R +GY + Sbjct: 182 HVWGM-DFDPGSNVVDVYVGYLRKKLGADT----IATVRGMGYRFN 222 >gi|312863869|ref|ZP_07724107.1| putative sensory transduction protein RegX3 [Streptococcus vestibularis F0396] gi|311101405|gb|EFQ59610.1| putative sensory transduction protein RegX3 [Streptococcus vestibularis F0396] Length = 217 Score = 140 bits (354), Expect = 9e-32, Method: Composition-based stats. Identities = 45/220 (20%), Positives = 91/220 (41%), Gaps = 7/220 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D L+++G + G + L D+ ++ L L Sbjct: 3 ILIVEDEVLIREGMSDYLMECGHEVFEAGDGHEALDLFYREMPDLVLLDIQLPI--LNGL 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IR S VP++ ++ + L F D + +L + Sbjct: 61 EVLKTIRKTSSVPVLMLTAFHDEDYKLTAFGELADGY-LEKPFSLSLLRVRIEAIFKKLQ 119 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + G +RV + + G+ + +E ILEYL+ + GK ++QI A++ Sbjct: 120 PSRVFTYGDVRVDFESYTASLAGQAISMNAKELEILEYLLQHEGKARTRSQILDAVWKET 179 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +E + V++ +I +LRKKL D + + R +GY ++ Sbjct: 180 EEIPFDRVIDVYIKELRKKLEL----DCIVTVRNVGYKLE 215 >gi|311070610|ref|YP_003975533.1| YvrH protein [Bacillus atrophaeus 1942] gi|310871127|gb|ADP34602.1| YvrH [Bacillus atrophaeus 1942] Length = 236 Score = 140 bits (354), Expect = 9e-32, Method: Composition-based stats. Identities = 45/226 (19%), Positives = 98/226 (43%), Gaps = 11/226 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD + + +G+ + ++ + + D+ ++ L + Sbjct: 9 LIIDDEQEILALIKTVLVKEGIENVITSSTAKDGFTQFQQKQPDIVLLDIML--PDGEGY 66 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------AI 115 ++ + IR S VP+I +S + G DD + KP +E+ RV Sbjct: 67 DVCKQIRELSNVPIIFLSAKGEETDKIVGLAIGGDDYITKPFSPKEVAYRVKAQLRRANY 126 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + +++N + GP ++ + GE L +E ++++Y + N ++K +++ Sbjct: 127 SQSKGIADNIIKVGPFQLSERKAELTKNGEPVELKPKELKLMKYFLQNPNMVISKETLYN 186 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 A++G D +N + HI +LR+K+ K D + + + LGY Sbjct: 187 AVWGE-DSFGFDNTIMVHIRRLREKIETKPSKPDYLVTVKGLGYKF 231 >gi|310818000|ref|YP_003950358.1| DNA-binding response regulator PhoP [Stigmatella aurantiaca DW4/3-1] gi|309391072|gb|ADO68531.1| DNA-binding response regulator PhoP [Stigmatella aurantiaca DW4/3-1] Length = 235 Score = 140 bits (354), Expect = 9e-32, Method: Composition-based stats. Identities = 47/226 (20%), Positives = 91/226 (40%), Gaps = 9/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++ + ++G ++E ++L DV ++ L Sbjct: 10 ILVVEDDLNLRLTLVDNLEEEGYAVEAASTLAEARAKVRGTAFDVVVLDLML--PDGDGY 67 Query: 62 ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIY 116 L R + +A + ++ ++ + F+ G DD V KP R I A Sbjct: 68 TLCRELRQAATSSRVLMLTARSLEDDVVKGFEVGADDYVPKPYRLRELLARIRALARRGA 127 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + R G+ L R E +L +L+ + GK + + QI S+ Sbjct: 128 GAPVSTEVLTFDRFRVDLASRRILNATGQALELTRTEFDLLVFLLRHAGKALTRDQILSS 187 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221 ++G D V+ + V++ +S LRKKL + S R +GY +D Sbjct: 188 VWGE-DVVVDGHTVDNFVSNLRKKLEWTSTSRFEIRSVRGVGYRLD 232 >gi|119476332|ref|ZP_01616683.1| two-component system regulatory protein [marine gamma proteobacterium HTCC2143] gi|119450196|gb|EAW31431.1| two-component system regulatory protein [marine gamma proteobacterium HTCC2143] Length = 232 Score = 140 bits (354), Expect = 9e-32, Method: Composition-based stats. Identities = 47/221 (21%), Positives = 92/221 (41%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++ +++ + + D++ I+ L + Sbjct: 3 ILIVEDEDHIRQQLRTAMRRQNYAVDVAKDGREGLYFATEYPYDLAIIDLGL--PEISGI 60 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L + +R + Q P++ ++ Q ++ ++G DD V KP E+ AR+ A+ RR Sbjct: 61 TLIKELRENDKQFPILILTARSDWQDKVEGLEAGADDYVVKPFQMEEVNARINALLRRSA 120 Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S + + + + + + L E LEYL N GK V+KT++ +Y Sbjct: 121 GSCKPSMSFGPLTINTTSKVALIGNTEMTLTSYEYNTLEYLAHNAGKVVSKTELTEHLYS 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D + NV+E I +LRKK+ + + R GY Sbjct: 181 Q-DFERDSNVIEVFIGRLRKKIDPDNQLKAIVTVRGQGYRF 220 >gi|22299966|ref|NP_683213.1| two-component response regulator [Thermosynechococcus elongatus BP-1] gi|22296151|dbj|BAC09975.1| two-component response regulator [Thermosynechococcus elongatus BP-1] Length = 242 Score = 140 bits (354), Expect = 9e-32, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 88/228 (38%), Gaps = 9/228 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++IDD + D G + + L D+ ++ L G + Sbjct: 5 ILIIDDDPAIADVLAINLQMAGYEVTKSLDGMQGQALAVQLSPDLILLDLMLPQVDGFTI 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R +P++ ++ ++ F++G DD + KP E+LARV A+ RR Sbjct: 65 CQRLRRDPRTQDIPILMLTALSQTHNKVEGFNAGADDYLTKPFELEEMLARVRALLRRAD 124 Query: 121 VSNNRAETGPIRVF------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 A I + + + G++ L R E +L L+ G+ V+ ++I Sbjct: 125 RIPATAGHREILSYGPLTLVPERFEVSWFGKIIKLTRLEFELLHCLLQRHGQTVSPSEIL 184 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 ++G +D + + H+ LR KL + + GY ++ Sbjct: 185 KEVWG-YDPDDDIETIRVHVRHLRTKLEPDPRNPRYIKTVYGAGYCLE 231 >gi|329925314|ref|ZP_08280255.1| sensory transduction protein RegX3 [Paenibacillus sp. HGF5] gi|328939922|gb|EGG36257.1| sensory transduction protein RegX3 [Paenibacillus sp. HGF5] Length = 232 Score = 140 bits (354), Expect = 9e-32, Method: Composition-based stats. Identities = 39/230 (16%), Positives = 84/230 (36%), Gaps = 15/230 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + D +G +S ++ D+ ++ L + L Sbjct: 6 ILIIEDEEPIADLLAYGLAMEGFETRTASSGAAGFRELAAFHPDLLLLDWML--PDQSGL 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI---------HHREILARV 112 ++ + + +P+ I+ + + + G DD + KP Sbjct: 64 DICKKVTTDYNIPIFMITAKSDITDKVLGLEFGADDYITKPFDLREVVARIRTILRRLDQ 123 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 A R I + ++ R G L +E +L + +RGK +++ Sbjct: 124 ANQGDREGAPEAVIRFKGIEIVTEERLVRKDGSPVDLTPKEFDLLMTMYGHRGKIYTRSE 183 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + ++G +D + V++HI +LRKKL D + + +GY + Sbjct: 184 LLDLVWG-YDFMGDTRTVDTHIQRLRKKLD---AGDLITTVFGIGYKFEK 229 >gi|327481834|gb|AEA85144.1| two-component response regulator [Pseudomonas stutzeri DSM 4166] Length = 224 Score = 140 bits (354), Expect = 9e-32, Method: Composition-based stats. Identities = 48/223 (21%), Positives = 98/223 (43%), Gaps = 5/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A D + G +E + + L D+ ++ L G Sbjct: 3 ILVVEDEAKTADYLKRGLEESGYRVEVARNGVDGKHLIEEETFDLVILDVML--PGLDGW 60 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +L +++R S P++ ++ +++ + + G DD + KP + E+LARV + RR Sbjct: 61 QLVQVVRQRSAHTPVLFLTARDAVEDRVRGLELGADDYLIKPFSYAELLARVRTLLRRGP 120 Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + R QGE L +E +L L++ +G+ +++ QI S ++ Sbjct: 121 PREVEHFHVADLELDLLRRRVTRQGERINLTNKEFALLHLLLSRQGEVLSRAQIASQVW- 179 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + + NVV+ I +LR K+ + + + R +GY +D Sbjct: 180 QMNFDSDTNVVDVAIRRLRAKVDDPYPLKLIHTVRGMGYVLDV 222 >gi|326203105|ref|ZP_08192971.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] gi|325986751|gb|EGD47581.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] Length = 230 Score = 140 bits (354), Expect = 9e-32, Method: Composition-based stats. Identities = 48/226 (21%), Positives = 89/226 (39%), Gaps = 8/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD + D +G + + S + ++ + Sbjct: 5 ILIADDNEGILDILKTYAEKEGFMPLLAHDGLEAIDIFSKYHPLLLLLDVM--MPKKDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR S VP+I I+ + D G DD + KP E++AR+ AI RR+ Sbjct: 63 EVCREIRQKSNVPIIMITAKGEDSDRIMGLDIGADDYIVKPFSPGEVMARIRAILRRVDN 122 Query: 122 SNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 SN + + +V G L ++E IL L N GK ++ + ++ Sbjct: 123 SNEDNKKVTQHPGLEINIAEYEVKVNGSPVNLTKKEIEILWLLATNPGKVFSRDNLLDSV 182 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSIDW 222 +G ++ + V++HI +LR K+ + + +GY + Sbjct: 183 WG-YEYFGDARTVDTHIKRLRAKIDISDKISWDIKTIWGVGYKFEV 227 >gi|325662201|ref|ZP_08150816.1| hypothetical protein HMPREF0490_01554 [Lachnospiraceae bacterium 4_1_37FAA] gi|325471453|gb|EGC74674.1| hypothetical protein HMPREF0490_01554 [Lachnospiraceae bacterium 4_1_37FAA] Length = 224 Score = 140 bits (354), Expect = 9e-32, Method: Composition-based stats. Identities = 46/221 (20%), Positives = 95/221 (42%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ +D + + S++ E + A DV ++ + L Sbjct: 3 ILIAEDERDLNKILAQRLIAEHYSVDSCMDGEAALDYLAGAEYDVVILDIM--MPKKDGL 60 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R IR + VP++ ++ S++ + D+G +D + KP E+LAR+ + RR + Sbjct: 61 SVLREIRQKNKHVPVLLLTAKDSVEDRVRGLDAGANDYLVKPFAFEELLARIRVLLRRPE 120 Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S + V D G+ L +E +L Y++ N+G +++ ++ ++ Sbjct: 121 KSEDSCYREGGLEVHVDTHQVFRDGKEIQLSGKEFALLRYMIQNKGIVLSREKLEQHLW- 179 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D A NV++ +I LRKK+ + + R GY + Sbjct: 180 NYDYAGGSNVIDVYIRYLRKKIDEPFEEKLIHTVRGAGYVL 220 >gi|108760068|ref|YP_634130.1| DNA-binding reponse regulator [Myxococcus xanthus DK 1622] gi|108463948|gb|ABF89133.1| DNA-binding reponse regulator [Myxococcus xanthus DK 1622] Length = 231 Score = 140 bits (354), Expect = 9e-32, Method: Composition-based stats. Identities = 45/221 (20%), Positives = 80/221 (36%), Gaps = 7/221 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A + G + G + + D+ ++ L G+ Sbjct: 9 ILVVEDDAPIAAGIVRGLKLAGFQVVLATDGVLALEMAEREHPDLVVLDLNL--PGQDGF 66 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL R +VP+I ++ L+ L F G D + KP E++AR+ A + Sbjct: 67 ELLEAWRFRLRVPVIVLTARQELEARLRSFGLGAVDYLPKPFWMEELVARIRARLLLQEE 126 Query: 122 SNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 R P R E +L YL G+ + + QI Sbjct: 127 RPRRVLHWDDVSLDLDAREASREGTGALPFTRHEFDVLAYLAERPGRALTRAQIAQHAL- 185 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 E ++ V+SHI+++RKKL + + +GY Sbjct: 186 PPSEERDDRTVDSHIARIRKKLGPAGA--RIQTSWGIGYRF 224 >gi|120406123|ref|YP_955952.1| two component transcriptional regulator [Mycobacterium vanbaalenii PYR-1] gi|119958941|gb|ABM15946.1| two component transcriptional regulator, winged helix family [Mycobacterium vanbaalenii PYR-1] Length = 236 Score = 140 bits (354), Expect = 9e-32, Method: Composition-based stats. Identities = 48/224 (21%), Positives = 87/224 (38%), Gaps = 10/224 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD A + + G + ++ R D ++ G Sbjct: 13 LVVDDEANIVELLSVSLKFQGFEVHTASNGPAALDKAREVRPDAIILDVM--MPGMDGFG 70 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPI-----HHREILARVAAIY 116 L R +RA P + ++ SLQ + G DD V KP R + + Sbjct: 71 LLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRSGR 130 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + +R I + D + GE L E +L Y + N G ++K +I Sbjct: 131 GHEEPRTSRLTFADIELDEDTHEVWKAGEPVSLSPTEFTLLRYFIINAGTVLSKPKILDH 190 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +D + NVVES++S LR+K+ + + + R +GY + Sbjct: 191 VW-RYDFGGDVNVVESYVSYLRRKI-DTGDKRLLHTLRGVGYVL 232 >gi|303242250|ref|ZP_07328738.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] gi|302590238|gb|EFL59998.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] Length = 231 Score = 140 bits (354), Expect = 9e-32, Method: Composition-based stats. Identities = 40/229 (17%), Positives = 91/229 (39%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + +G S++ N D+ ++ L G Sbjct: 4 ILIVEDDHSIGELEKDYLEINGFSVKICNEGVSGLNCIKEEEFDLLILDIML--PGIDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + +R +P++ +S + G DD + KP E++ARV A + + Sbjct: 62 EILKRVRDVKDIPILLVSAKKEEIDKIRGLGLGADDYITKPFSPGELVARVNAHISKYER 121 Query: 122 SNNRAETGPIR---------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 ++ + + R V G+ + ++E +L +++ N + + + Sbjct: 122 LKSKYGNENPNETFTIRGLEIQKESRRVFVNGKELNMAQKEYELLLFMVQNPNRVFGREE 181 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 +F I+G FD + V HI+++R+K+ + V++ GY Sbjct: 182 LFERIWG-FDSLGDAATVTVHIARIREKIETDPSNPQYVETVWGAGYRF 229 >gi|302528854|ref|ZP_07281196.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. AA4] gi|302437749|gb|EFL09565.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. AA4] Length = 230 Score = 140 bits (354), Expect = 9e-32, Method: Composition-based stats. Identities = 45/226 (19%), Positives = 86/226 (38%), Gaps = 12/226 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + A +G S+ + +++ D+ ++ L G LE Sbjct: 9 LVVEDDLTIAASIDARLSAEGFSVTVAHDGPAAVEAEAATSPDLVVLDVML--PGFDGLE 66 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYRR 118 + R I+A VP++ ++ L G DD + KP R I A + + R Sbjct: 67 VCRRIQARRPVPVLMLTARADETDLLVGLGVGADDYLTKPFSMRVLSARIQALLRRVERS 126 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + R G + + R GE L E +L + + ++ S ++ Sbjct: 127 SAAAEERIVLGDLEIDIAERRVRRGGEPAQLTPIEFDLLVHFARRPRAVQPRERLLSEVW 186 Query: 179 GLF--DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 V+SHI LR+KL G D + + +GY+++ Sbjct: 187 DWDVQATGAGTRAVDSHIKALRRKL----GADLIRTVHGVGYALEV 228 >gi|304386239|ref|ZP_07368572.1| response regulator [Pediococcus acidilactici DSM 20284] gi|304327596|gb|EFL94823.1| response regulator [Pediococcus acidilactici DSM 20284] Length = 234 Score = 140 bits (354), Expect = 9e-32, Method: Composition-based stats. Identities = 45/227 (19%), Positives = 91/227 (40%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + ++ R D ++ L + Sbjct: 5 ILVVDDEPAIVTLLTYNLKQANYQVISVDNGVDAVKEVQRGRVDFVIMDLML--PQLDGV 62 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E + IR + Q+P+I ++ S + + G DD + KP +E+++R+ AI RR Sbjct: 63 EATKQIRKFNEQIPIIMLTAKSSEVDKILGLELGADDYLTKPFSPQELISRIKAILRRTN 122 Query: 121 VSNNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + P + + G+ L E R+L++L N + +++ QI Sbjct: 123 RVVDLKKIVPELPVTGVTIDFKRLTVQKNGQPVALTPNEFRLLKFLFQNSNQVLSRDQIL 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 ++G ++ + +V+ HIS LR KL + + + R GY Sbjct: 183 EQVWG-YEYGGQTRIVDMHISHLRDKLEDDPKHPRLIKTIRGFGYEF 228 >gi|299538648|ref|ZP_07051931.1| putative sensory transduction protein [Lysinibacillus fusiformis ZC1] gi|298726235|gb|EFI66827.1| putative sensory transduction protein [Lysinibacillus fusiformis ZC1] Length = 225 Score = 140 bits (354), Expect = 9e-32, Method: Composition-based stats. Identities = 43/222 (19%), Positives = 96/222 (43%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A +++ ++G+ + + + D+ ++ Sbjct: 4 LLVVDDDAHIRELVKVFLQNEGLEVIEAIDGVDALSKLDTEKIDMVVMDIM--MPNMDGW 61 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L IR+ + P++ ++ + F G DD + KP E++ RV +I +R + Sbjct: 62 ALCEEIRSFNTDLPILMLTAKGETSQKIKGFHLGTDDYLVKPFEPAELIVRVKSILKRYR 121 Query: 121 VSNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +S ++ + E+ GE+ L +E +L L + GK ++ Q+ I+G Sbjct: 122 ISLSQVVEAGHVKLNRHTHEVEMNGEMILLRLKEFELLFTLASYVGKTFSREQLIEEIWG 181 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +D +E V+ HI ++R++ + + + R LGY ++ Sbjct: 182 -YDYEGDERTVDVHIKRIRERFPQEASGIAIRTIRGLGYRLE 222 >gi|289424081|ref|ZP_06425867.1| transcriptional regulatory protein ResD [Peptostreptococcus anaerobius 653-L] gi|289155506|gb|EFD04185.1| transcriptional regulatory protein ResD [Peptostreptococcus anaerobius 653-L] Length = 224 Score = 140 bits (354), Expect = 9e-32, Method: Composition-based stats. Identities = 44/224 (19%), Positives = 92/224 (41%), Gaps = 10/224 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-EDVSAIEAFLIGKGEKV 60 ++IDD ++D F + S++ N+ L D+ ++ Sbjct: 6 ILIIDDDLSIQDLLAEFFTANDYSVDCANNGVEGIKLFRDNLGYDLILLDIM--MPNLDG 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118 ++IR S+VP+I +S + L ++ G DD + KP ++ +V A Sbjct: 64 YTTCKMIRNTSKVPIIFMSALNAENDQLKGYELGCDDYITKPFSFNLLVKKVEAVLKRTS 123 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 N + + D + G L +E IL+ L+ + + + + I+ Sbjct: 124 ETSPTNSIVFDKMHLDLDTYSISIDGNTVELTLKEFNILKTLIEKYPQIITRESLLDQIW 183 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 G +D + +V++HI +RKKL+ + + + +GY+++ Sbjct: 184 G-YDYYGDTRIVDAHIKNIRKKLKIP----YIRTVKGIGYTLEK 222 >gi|229099488|ref|ZP_04230416.1| Two-component response regulator vanRB [Bacillus cereus Rock3-29] gi|229105646|ref|ZP_04236279.1| Two-component response regulator vanRB [Bacillus cereus Rock3-28] gi|229118506|ref|ZP_04247860.1| Two-component response regulator vanRB [Bacillus cereus Rock1-3] gi|228665076|gb|EEL20564.1| Two-component response regulator vanRB [Bacillus cereus Rock1-3] gi|228677782|gb|EEL32026.1| Two-component response regulator vanRB [Bacillus cereus Rock3-28] gi|228683784|gb|EEL37734.1| Two-component response regulator vanRB [Bacillus cereus Rock3-29] Length = 216 Score = 140 bits (354), Expect = 9e-32, Method: Composition-based stats. Identities = 43/221 (19%), Positives = 96/221 (43%), Gaps = 11/221 (4%) Query: 5 IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64 I+D +++ +++ + L D+ ++ L + Sbjct: 2 IEDNPDIQELIREFLMAQNFTVDVVGAGTEGILLFQKNSYDLVLLDVML--PDIDGYSIC 59 Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYRRLK 120 +I+R S VP+I ++ + ++ + F+ G+DD + KP H+ + RV + Sbjct: 60 KIMRGQSDVPIIMLTGLHNEESEIKGFELGIDDYITKPFHYTVFIKRVEAVLRRAATKEA 119 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + + + S V G L +E I+ L+ NRGK ++++ + + ++G Sbjct: 120 EAATILQFHELMLNSTAYAAYVHGNQIELTTKEFEIIYTLLQNRGKVLSRSDLLNKVWG- 178 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ + V+++HI LRKKL + + + +GY I+ Sbjct: 179 YEHFGDVRVIDTHIKNLRKKLEIP----YIKTVKGIGYKIE 215 >gi|209964019|ref|YP_002296934.1| two-component transcriptional regulator, putative [Rhodospirillum centenum SW] gi|209957485|gb|ACI98121.1| two-component transcriptional regulator, putative [Rhodospirillum centenum SW] Length = 225 Score = 140 bits (354), Expect = 9e-32, Method: Composition-based stats. Identities = 49/222 (22%), Positives = 95/222 (42%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D A + + G ++ + + +L +S D ++ L G L Sbjct: 3 ILVIEDDAGTAEYLTKGLKEAGHVVDHAATGKDGLFLAASESYDALVVDRML--PGRDGL 60 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA--AIYRR 118 + ++RA +P + +S S++ + +G DD + KP E+LAR+ R Sbjct: 61 SVLEVLRATGNGIPALVLSALSSVEDRVKGLRAGADDYLPKPFAFSELLARLDALERRAR 120 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 R + + + R G L RE +LE+LM N G V +T + ++ Sbjct: 121 GSGPVTRLQVSDLEMDLLARSVSRAGRPVDLLPREFLLLEFLMRNAGHVVTRTMLLERVW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + NV++ HI++LR+K+ + + R GY + Sbjct: 181 D-YHFDPQTNVIDVHIARLRQKIDKDHPAPLIHTVRGAGYVL 221 >gi|182419828|ref|ZP_02951068.1| regulatory protein VanR [Clostridium butyricum 5521] gi|237666356|ref|ZP_04526341.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376376|gb|EDT73958.1| regulatory protein VanR [Clostridium butyricum 5521] gi|237657555|gb|EEP55110.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E BL5262] Length = 235 Score = 140 bits (354), Expect = 9e-32, Method: Composition-based stats. Identities = 39/233 (16%), Positives = 82/233 (35%), Gaps = 15/233 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++D +G + + + D+ ++ + Sbjct: 6 ILIVDDEKEIRDLVEIYLKSEGYNTLQACDGLEAIDIIENTDVDIVILDVM--MPNLNGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----------REILA 110 E IR ++P+I +S + + G DD ++KP + R Sbjct: 64 ETCLKIREMKEMPIIMLSAKSEDIDKILGLNMGADDYLSKPFNPLELVARVKSQLRRFYK 123 Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 K N + + D + ++ L E IL L +RGK + Sbjct: 124 FKNKQDVLYKEDENIIRIEDLTINLDTHEVKLGDTFLKLTPTEFDILSLLSKSRGKVFSI 183 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 I+ +++ + +N V HI K+R+K+ + + + +GY I+ Sbjct: 184 ENIYESVWNQ-EFMTSDNTVMVHIRKIREKIESDPRNPRFIKTVWGVGYKIEK 235 >gi|297243684|ref|ZP_06927615.1| response regulator (CheY receiver/winged-helix DNA-binding) [Gardnerella vaginalis AMD] gi|296888435|gb|EFH27176.1| response regulator (CheY receiver/winged-helix DNA-binding) [Gardnerella vaginalis AMD] Length = 250 Score = 140 bits (354), Expect = 9e-32, Method: Composition-based stats. Identities = 35/229 (15%), Positives = 78/229 (34%), Gaps = 16/229 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + G + D+ ++ L + Sbjct: 14 ILVVEDEPDLATAIAQRITAQGWRARVAADGASAVRAAEQLKPDLIIMDVMLPI--MDGI 71 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV--------- 112 E R I + VP++ ++ + + +G DD + KP RE++AR Sbjct: 72 EATRRIISKMPVPILMLTARDAEADKIVGLSAGADDYMTKPFSPRELIARCAALLRRVER 131 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 A+ + G + + R + + E +L L + + + Sbjct: 132 ASQIAKTMEHERTINFGSLIIRPRQRLVTLNDKEVHFTPTEFDLLATLARHPHTVFKREE 191 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + ++ D + V+SHI LR K+ G + + + +GY+ + Sbjct: 192 LLEEVWDWPDASG-TRTVDSHIKSLRHKI----GSEWIRTVHGIGYAFE 235 >gi|295103863|emb|CBL01407.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Faecalibacterium prausnitzii SL3/3] Length = 230 Score = 140 bits (354), Expect = 9e-32, Method: Composition-based stats. Identities = 32/222 (14%), Positives = 85/222 (38%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + DG + + D+ ++ L Sbjct: 4 ILIVEDDSFLNKMVAYNLTADGYGVTSALNARTAAEAIRQREFDLVLLDINL--PDGNGF 61 Query: 62 ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH---REILARVAAIYR 117 EL ++I H +I ++ + ++ G D + KP + + + A+ Sbjct: 62 ELCKLIKPQHPDTIVIFLTANDQESDQIRGYEVGAVDYITKPFVIGALQRKIKAMFAMLE 121 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 K + + + G + + + + G+ L E ++L N + + + Q+ + Sbjct: 122 HHKPAKDIYDDGRLFLDFSEQTASLNGKPLTLSPMEYKMLNLFRKNHRQVLTRGQLLEKL 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 + + + V+E+ + + IS++R K+ + G + + +GY Sbjct: 182 WDIDERFVDEHTLTTSISRIRSKIESDGGAPYIKTVYGMGYQ 223 >gi|295704202|ref|YP_003597277.1| two-component response regulator [Bacillus megaterium DSM 319] gi|294801861|gb|ADF38927.1| two-component response regulator [Bacillus megaterium DSM 319] Length = 224 Score = 140 bits (354), Expect = 9e-32, Method: Composition-based stats. Identities = 52/220 (23%), Positives = 94/220 (42%), Gaps = 5/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD +++ + G + E R D++ ++ + K Sbjct: 4 ILVADDDQHIRELISLYLENQGFKIIKAADGEEAWAKMEEFRIDLAVVDIMMPFK--DGW 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL + I+ + +P++ ++ L FD G DD V KP +E++ARV A+ RR +V Sbjct: 62 ELTKEIKEYFDIPVLMVTARGESHDKLKGFDIGTDDYVVKPFDPQEMVARVKALLRRYRV 121 Query: 122 SNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 N + LP +E +L L+++ GK + Q+ I+G Sbjct: 122 EANNVIYMGNIKLDRTKLEMSAGETSEQLPLKEFELLFTLVSSPGKIFTRDQLIQLIWG- 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYS 219 +D EE V+ HI +LR++L + + + R LGY Sbjct: 181 YDYEGEERTVDVHIKRLRERLNHMKNVGMEIKTIRGLGYR 220 >gi|229018178|ref|ZP_04175051.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH1273] gi|228743103|gb|EEL93230.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH1273] Length = 224 Score = 140 bits (354), Expect = 9e-32, Method: Composition-based stats. Identities = 38/220 (17%), Positives = 96/220 (43%), Gaps = 11/220 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++ DD + A F +G + E + + D++ ++ + + Sbjct: 13 LIADDEQDMLKILKAYFEKEGFEVLLAKDGEEALQIFYDEKIDLAILDWMMPKS--SGIT 70 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + I+ +S V ++ ++ + L SG D+ V KP H ++ R ++L Sbjct: 71 VCQEIKKNSSVKVLMLTAKSESEDELAALQSGADEYVKKPFHPGVLITRA----KKLVQH 126 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 + + +++ + + + E ++++ + ++G + + ++ ++G FD Sbjct: 127 EDVIQVQDLKIDFTKNKVYKNEKELDITKTELQLIKCFLNHKGTILTRKKLLDIVWG-FD 185 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 EE V++H+ +LRKK+ + + + R LGYS++ Sbjct: 186 YFGEERTVDTHVRRLRKKIGE----NIIKTHRGLGYSLEE 221 >gi|222098721|ref|YP_002532779.1| DNA-binding response regulator [Bacillus cereus Q1] gi|221242780|gb|ACM15490.1| DNA-binding response regulator [Bacillus cereus Q1] Length = 223 Score = 140 bits (354), Expect = 9e-32, Method: Composition-based stats. Identities = 41/226 (18%), Positives = 87/226 (38%), Gaps = 12/226 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +++ +G + DV ++ L Sbjct: 3 ILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWKEG-PDVLILDVML--PDTDGY 59 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL R+ R +P++ ++ + L G DD V KP ++ E++ RV + RR+K Sbjct: 60 ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRVK 119 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEV-----FPLPRRERRILEYLMANRGKRVAKTQIFS 175 + I P+ + L RE + + ++N + + ++ Sbjct: 120 KTEVTVSHEVIEAGEITICPKERKVHVSGQEVQLTYREFNLCQLFVSNPQRVFMRDELLE 179 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G F+ V+ + +LRKKL + + + +GY +D Sbjct: 180 KVWG-FEYIGNTRAVDIMVQRLRKKLGKSG--EYIKTIYGVGYKLD 222 >gi|157273493|gb|ABV27392.1| transcriptional regulatory protein [Candidatus Chloracidobacterium thermophilum] Length = 242 Score = 140 bits (354), Expect = 9e-32, Method: Composition-based stats. Identities = 43/224 (19%), Positives = 93/224 (41%), Gaps = 11/224 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDG-VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 V+I+D + +G + + E ++ ++ L Sbjct: 5 IVIIEDDTDIAQSIRYNLEQEGSFHVTITTTGEAGLRTVLEHPPNLILLDINLPL--MNG 62 Query: 61 LELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-Y 116 E+ R +R A + VP+I ++ + G DD + KP RE++AR+ A+ Sbjct: 63 FEICRRLRREEATAHVPIIMLTARTDETDKIHGLGLGADDYITKPFSVRELMARINAVLR 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 R ++ + G + + + QG+ L R+E +L+ L ++G+ + + + Sbjct: 123 RTEGTPSSVYDDGTLFIDYNHFVVRCQGQEINLTRKEFALLKLLAQSKGRVLTREYLLDR 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G+ D E ++ HI ++R+KL +++ +GY Sbjct: 183 VWGI-DYDGETRTLDVHIRRVRQKLGIDG---YIETAVGIGYRF 222 >gi|229133751|ref|ZP_04262577.1| Two component transcriptional regulator, winged helix [Bacillus cereus BDRD-ST196] gi|228649786|gb|EEL05795.1| Two component transcriptional regulator, winged helix [Bacillus cereus BDRD-ST196] Length = 215 Score = 140 bits (354), Expect = 9e-32, Method: Composition-based stats. Identities = 38/220 (17%), Positives = 96/220 (43%), Gaps = 11/220 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++ DD + A F +G + E + + D++ ++ + + Sbjct: 4 LIADDEQDMLKILKAYFEKEGFEVLLAKDGEEALQIFYDEKIDLAILDWMMPKS--SGIT 61 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + I+ +S V ++ ++ + L SG D+ V KP H ++ R ++L Sbjct: 62 VCQEIKKNSSVKVLMLTAKSESEDELAALQSGADEYVKKPFHPGVLITRA----KKLVQH 117 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 + + +++ + + + E ++++ + ++G + + ++ ++G FD Sbjct: 118 EDVIQVQDLKIDFTKNKVYKNEKELDITKTELQLIKCFLNHKGTILTRKKLLDIVWG-FD 176 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 EE V++H+ +LRKK+ + + + R LGYS++ Sbjct: 177 YFGEERTVDTHVRRLRKKIGE----NIIKTHRGLGYSLEE 212 >gi|167751410|ref|ZP_02423537.1| hypothetical protein EUBSIR_02401 [Eubacterium siraeum DSM 15702] gi|167655656|gb|EDR99785.1| hypothetical protein EUBSIR_02401 [Eubacterium siraeum DSM 15702] Length = 222 Score = 140 bits (354), Expect = 9e-32, Method: Composition-based stats. Identities = 41/221 (18%), Positives = 87/221 (39%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + D + ++ + E L + ++ L G Sbjct: 4 ILIVEDNEELADILCDFLRAENYTVSVAKTGEKALSLYEKYGARLIVLDIML--PGIDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R IR S P++ +S + L+ G DD + + +I+ A + + Sbjct: 62 AVCRKIREESDTPILIVSAKVDKEDKLNGLILGADDY-IEKPYDIDIMLAKIAGIFKRRY 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + G IRV R + +E +L L+ N+G+ + K +F+ I+G Sbjct: 121 AVDELIDGDIRVNKVSRTVCRNDIPIEMTVKEFELLVLLIENKGRILTKEYLFNQIWG-S 179 Query: 182 DEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 D E+ + HI +LR+K+ + + + +GY + Sbjct: 180 DSFSEQQTLTVHIKRLRQKIEDDPKNPKHIQTVWGVGYKYE 220 >gi|73537794|ref|YP_298161.1| heavy metal response regulator [Ralstonia eutropha JMP134] gi|72121131|gb|AAZ63317.1| Heavy metal response regulator [Ralstonia eutropha JMP134] Length = 229 Score = 140 bits (354), Expect = 9e-32, Method: Composition-based stats. Identities = 43/221 (19%), Positives = 91/221 (41%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D D + + G ++ D+ ++ L G Sbjct: 3 ILIVEDEPKAGDYLLKGLTESGFVVDLARDGVDGLAHAREQPYDLIVLDVML--PGMDGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120 + R +R P++ ++ LQ L + G DD + KP E++ R+ I R Sbjct: 61 SVLRELRRERDTPVLFLTARDELQDRLKGLELGADDYMVKPFAFAELVMRIRTILRRGPL 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + E +++ + R G+ L +E +L L RG+ ++++ I S ++ + Sbjct: 121 RESEFIEVADLQIDAIRRRVSRSGQKIDLTSKEFALLYLLARRRGEVLSRSLIASQVWDV 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + NVV+ I +LR K+ + + ++R +GY +D Sbjct: 181 -NFDSNTNVVDVSIRRLRAKVDDPFDHKLIHTRRGMGYVLD 220 >gi|300790441|ref|YP_003770732.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299799955|gb|ADJ50330.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 226 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 48/221 (21%), Positives = 95/221 (42%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G + + ++ W + DV ++ L Sbjct: 3 LLIVEDEREFAETLRRGLVAEGFTADVAHTGREGLWRATEHAYDVVVLDIML--PELSGY 60 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ + +R A + P++ ++ D FD G DD ++KP ++AR+ A+ RR Sbjct: 61 EVLKRLRAAENWTPVLMLTAKDGEYDEADAFDLGADDYLSKPFSFVVLIARLRALLRRGA 120 Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + R+ R + L RE +LE+L+ G ++K +I S ++ Sbjct: 121 PARPAVLEAGDLRLDPSARTVHRGQKRIELTAREFGLLEFLLRRTGAALSKNEILSHVWD 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +ENVVE +I LR+K+ G +++ R +GY + Sbjct: 181 AH-YDGDENVVEVYIGYLRRKIDAPFGTHTIETVRGVGYRL 220 >gi|255281933|ref|ZP_05346488.1| regulatory protein VanR [Bryantella formatexigens DSM 14469] gi|255267606|gb|EET60811.1| regulatory protein VanR [Bryantella formatexigens DSM 14469] Length = 237 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 40/230 (17%), Positives = 82/230 (35%), Gaps = 14/230 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D +++G L + ++ + L ++ D+ ++ G + Sbjct: 6 ILIIEDDPDIREGVRILLEGEDYTVTEAENGRKGLELLNAET-DLVILDVM--MPGMSGI 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILAR 111 IR S VP++ ++ L +G DD + KP + Sbjct: 63 RTCEEIRKVSNVPVLFLTAKSQESGKLIGLMAGGDDYLPKPFSYSELLGRVKALLRRYRV 122 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + ++ E +RV D EV+G+ L E ++L +M GK + Sbjct: 123 YRGKKEDDEDADACLEMAGVRVHKVFNDVEVRGKKVDLSDIEYQMLLLMMKYPGKIFSAQ 182 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 ++ +++ + V HI KLR K+ + + GY Sbjct: 183 NLYESVWDEPYFYTCNSTVMVHIRKLRVKIEENPQEPRLIQTVWGKGYRF 232 >gi|251797011|ref|YP_003011742.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247544637|gb|ACT01656.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 230 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 43/225 (19%), Positives = 90/225 (40%), Gaps = 9/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D ++D I+ +G + + + S+ D+ ++ L + Sbjct: 5 LVVEDEDKIRDVVISYLKKEGFKTLEAATGSYALEVLRSSLVDLVILDLML--PDMDGEQ 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + IR + +P++ +S S + G DD + KP RE++ARV AI RR S Sbjct: 63 VCVSIRKTNSIPILMLSAKMSDNNRIKGLSIGADDYLIKPFDPREVVARVRAILRRTDDS 122 Query: 123 N-----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + G + + S + GE L E ++L L + + ++ + Sbjct: 123 QLLADRSSYNHGHLEIDSLKQMVFCHGEPISLTPNEYKLLLMLAKYPQRHFTRNELVDKV 182 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 G +D + ++ H+ +R K+ + + + GY D Sbjct: 183 LG-YDFEGDVRTIDQHVKNIRYKIEPDPKNPLYIRTVYGSGYRFD 226 >gi|220927704|ref|YP_002504613.1| transcriptional regulator [Clostridium cellulolyticum H10] gi|219998032|gb|ACL74633.1| two component transcriptional regulator, winged helix family [Clostridium cellulolyticum H10] Length = 225 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 42/226 (18%), Positives = 93/226 (41%), Gaps = 11/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A +++ +G +E + D+ ++ Sbjct: 4 ILIVDDEAGIRNIIKKYAVFEGHEVEEAADGMEAIQVCREKEFDIIVMDVM--MPELDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118 + I+ S+ P++ +S + F+ G+DD V KP +E++ R+ I +R Sbjct: 62 SACKEIKKFSKAPVLMLSARGEEYDKIHGFELGIDDYVVKPFSPKELMMRINVIVKRSRG 121 Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + V GR + E + +E + YL+ NRG + + ++ + Sbjct: 122 TSDTENKKEIFTFKGLTVDFTGRLVYIDNEKIDMSPKEYDLFFYLVKNRGIALTRERLIT 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G +D ++ +++HI LRK L + + + R +GY + Sbjct: 182 DVWG-YDFFGDDRTLDTHIKLLRKSLGDYSKN--IVTLRGVGYRFE 224 >gi|15924405|ref|NP_371939.1| truncated (putative response regulator) [Staphylococcus aureus subsp. aureus Mu50] gi|21283034|ref|NP_646122.1| truncated (putative response regulator ArlR [Staphylococcus aureus subsp. aureus MW2] gi|49483605|ref|YP_040829.1| response regulator protein [Staphylococcus aureus subsp. aureus MRSA252] gi|49486256|ref|YP_043477.1| response regulator protein [Staphylococcus aureus subsp. aureus MSSA476] gi|57651916|ref|YP_186303.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp. aureus COL] gi|82751007|ref|YP_416748.1| two-component response regulator [Staphylococcus aureus RF122] gi|87161474|ref|YP_494005.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88195145|ref|YP_499946.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148267903|ref|YP_001246846.1| two component transcriptional regulator [Staphylococcus aureus subsp. aureus JH9] gi|150393966|ref|YP_001316641.1| response regulator receiver [Staphylococcus aureus subsp. aureus JH1] gi|151221540|ref|YP_001332362.1| two-component response regulator [Staphylococcus aureus subsp. aureus str. Newman] gi|156979734|ref|YP_001441993.1| truncated response regulator [Staphylococcus aureus subsp. aureus Mu3] gi|161509580|ref|YP_001575239.1| response regulator [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221142648|ref|ZP_03567141.1| response regulator [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253315262|ref|ZP_04838475.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253732052|ref|ZP_04866217.1| response regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253733338|ref|ZP_04867503.1| response regulator protein [Staphylococcus aureus subsp. aureus TCH130] gi|255006204|ref|ZP_05144805.2| DNA-binding response regulator [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257425479|ref|ZP_05601904.1| response regulator arlR [Staphylococcus aureus subsp. aureus 55/2053] gi|257428139|ref|ZP_05604537.1| two-component system response regulator [Staphylococcus aureus subsp. aureus 65-1322] gi|257430771|ref|ZP_05607153.1| two component transcriptional regulator [Staphylococcus aureus subsp. aureus 68-397] gi|257433530|ref|ZP_05609888.1| two component transcriptional regulator [Staphylococcus aureus subsp. aureus E1410] gi|257436371|ref|ZP_05612418.1| response regulator protein [Staphylococcus aureus subsp. aureus M876] gi|257795530|ref|ZP_05644509.1| response regulator protein [Staphylococcus aureus A9781] gi|258413338|ref|ZP_05681614.1| response regulator protein [Staphylococcus aureus A9763] gi|258420555|ref|ZP_05683497.1| two-component system response regulator [Staphylococcus aureus A9719] gi|258422552|ref|ZP_05685460.1| two component transcriptional regulator [Staphylococcus aureus A9635] gi|258434673|ref|ZP_05688747.1| response regulator protein [Staphylococcus aureus A9299] gi|258444751|ref|ZP_05693080.1| two-component system response regulator [Staphylococcus aureus A8115] gi|258447414|ref|ZP_05695558.1| two-component system response regulator [Staphylococcus aureus A6300] gi|258449255|ref|ZP_05697358.1| two-component system response regulator [Staphylococcus aureus A6224] gi|258452753|ref|ZP_05700750.1| response regulator arlR [Staphylococcus aureus A5948] gi|258454635|ref|ZP_05702599.1| two-component system response regulator [Staphylococcus aureus A5937] gi|269203038|ref|YP_003282307.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp. aureus ED98] gi|282892909|ref|ZP_06301144.1| response regulator arlR [Staphylococcus aureus A8117] gi|282903998|ref|ZP_06311886.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp. aureus C160] gi|282905760|ref|ZP_06313615.1| response regulator arlR [Staphylococcus aureus subsp. aureus Btn1260] gi|282908732|ref|ZP_06316550.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WW2703/97] gi|282914206|ref|ZP_06321993.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp. aureus M899] gi|282916682|ref|ZP_06324440.1| response regulator arlR [Staphylococcus aureus subsp. aureus D139] gi|282919128|ref|ZP_06326863.1| response regulator arlR [Staphylococcus aureus subsp. aureus C427] gi|282924311|ref|ZP_06331985.1| response regulator arlR [Staphylococcus aureus subsp. aureus C101] gi|282927663|ref|ZP_06335278.1| response regulator arlR [Staphylococcus aureus A9765] gi|282927940|ref|ZP_06335549.1| response regulator arlR [Staphylococcus aureus A10102] gi|283770486|ref|ZP_06343378.1| response regulator arlR [Staphylococcus aureus subsp. aureus H19] gi|283958180|ref|ZP_06375631.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp. aureus A017934/97] gi|284024415|ref|ZP_06378813.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp. aureus 132] gi|293501230|ref|ZP_06667081.1| response regulator arlR [Staphylococcus aureus subsp. aureus 58-424] gi|293510193|ref|ZP_06668901.1| response regulator arlR [Staphylococcus aureus subsp. aureus M809] gi|293526786|ref|ZP_06671471.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp. aureus M1015] gi|294850787|ref|ZP_06791503.1| response regulator arlR [Staphylococcus aureus A9754] gi|295406362|ref|ZP_06816169.1| response regulator arlR [Staphylococcus aureus A8819] gi|295427928|ref|ZP_06820560.1| response regulator arlR [Staphylococcus aureus subsp. aureus EMRSA16] gi|296275275|ref|ZP_06857782.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp. aureus MR1] gi|297207928|ref|ZP_06924361.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297244591|ref|ZP_06928474.1| response regulator arlR [Staphylococcus aureus A8796] gi|297591110|ref|ZP_06949748.1| response regulator [Staphylococcus aureus subsp. aureus MN8] gi|300912012|ref|ZP_07129455.1| response regulator [Staphylococcus aureus subsp. aureus TCH70] gi|304381007|ref|ZP_07363663.1| response regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|67460127|sp|P0C000|ARLR_STAAM RecName: Full=Response regulator ArlR gi|67460128|sp|P0C001|ARLR_STAAW RecName: Full=Response regulator ArlR gi|67460163|sp|Q5HG04|ARLR_STAAC RecName: Full=Response regulator ArlR gi|67460280|sp|Q6G9E6|ARLR_STAAS RecName: Full=Response regulator ArlR gi|67460282|sp|Q6GGZ3|ARLR_STAAR RecName: Full=Response regulator ArlR gi|67460427|sp|Q9KJN4|ARLR_STAA8 RecName: Full=Response regulator ArlR gi|123485963|sp|Q2FH23|ARLR_STAA3 RecName: Full=Response regulator ArlR gi|123549162|sp|Q2YY03|ARLR_STAAB RecName: Full=Response regulator ArlR gi|9230552|gb|AAF85896.1|AF165314_1 putative response regulator ArlR [Staphylococcus aureus] gi|14247186|dbj|BAB57577.1| truncated (putative response regulator) [Staphylococcus aureus subsp. aureus Mu50] gi|21204473|dbj|BAB95170.1| truncated (putative response regulator ArlR [Staphylococcus aureus subsp. aureus MW2] gi|49241734|emb|CAG40424.1| response regulator protein [Staphylococcus aureus subsp. aureus MRSA252] gi|49244699|emb|CAG43133.1| response regulator protein [Staphylococcus aureus subsp. aureus MSSA476] gi|57286102|gb|AAW38196.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp. aureus COL] gi|82656538|emb|CAI80960.1| two-component response regulator [Staphylococcus aureus RF122] gi|87127448|gb|ABD21962.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202703|gb|ABD30513.1| DNA-binding response regulator, putative [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147740972|gb|ABQ49270.1| two component transcriptional regulator, winged helix family [Staphylococcus aureus subsp. aureus JH9] gi|149946418|gb|ABR52354.1| response regulator receiver [Staphylococcus aureus subsp. aureus JH1] gi|150374340|dbj|BAF67600.1| two-component response regulator [Staphylococcus aureus subsp. aureus str. Newman] gi|156721869|dbj|BAF78286.1| truncated putative response regulator [Staphylococcus aureus subsp. aureus Mu3] gi|160368389|gb|ABX29360.1| response regulator [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253724214|gb|EES92943.1| response regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253728690|gb|EES97419.1| response regulator protein [Staphylococcus aureus subsp. aureus TCH130] gi|257271936|gb|EEV04074.1| response regulator arlR [Staphylococcus aureus subsp. aureus 55/2053] gi|257274980|gb|EEV06467.1| two-component system response regulator [Staphylococcus aureus subsp. aureus 65-1322] gi|257278899|gb|EEV09518.1| two component transcriptional regulator [Staphylococcus aureus subsp. aureus 68-397] gi|257281623|gb|EEV11760.1| two component transcriptional regulator [Staphylococcus aureus subsp. aureus E1410] gi|257284653|gb|EEV14773.1| response regulator protein [Staphylococcus aureus subsp. aureus M876] gi|257789502|gb|EEV27842.1| response regulator protein [Staphylococcus aureus A9781] gi|257839902|gb|EEV64370.1| response regulator protein [Staphylococcus aureus A9763] gi|257843503|gb|EEV67910.1| two-component system response regulator [Staphylococcus aureus A9719] gi|257847309|gb|EEV71315.1| two component transcriptional regulator [Staphylococcus aureus A9635] gi|257849034|gb|EEV73016.1| response regulator protein [Staphylococcus aureus A9299] gi|257850244|gb|EEV74197.1| two-component system response regulator [Staphylococcus aureus A8115] gi|257853605|gb|EEV76564.1| two-component system response regulator [Staphylococcus aureus A6300] gi|257857243|gb|EEV80141.1| two-component system response regulator [Staphylococcus aureus A6224] gi|257859566|gb|EEV82417.1| response regulator arlR [Staphylococcus aureus A5948] gi|257863018|gb|EEV85782.1| two-component system response regulator [Staphylococcus aureus A5937] gi|262075328|gb|ACY11301.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp. aureus ED98] gi|269940910|emb|CBI49294.1| response regulator ArlR [Staphylococcus aureus subsp. aureus TW20] gi|282313698|gb|EFB44091.1| response regulator arlR [Staphylococcus aureus subsp. aureus C101] gi|282316938|gb|EFB47312.1| response regulator arlR [Staphylococcus aureus subsp. aureus C427] gi|282319169|gb|EFB49521.1| response regulator arlR [Staphylococcus aureus subsp. aureus D139] gi|282322274|gb|EFB52598.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp. aureus M899] gi|282326996|gb|EFB57291.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331052|gb|EFB60566.1| response regulator arlR [Staphylococcus aureus subsp. aureus Btn1260] gi|282590237|gb|EFB95317.1| response regulator arlR [Staphylococcus aureus A10102] gi|282592052|gb|EFB97079.1| response regulator arlR [Staphylococcus aureus A9765] gi|282595616|gb|EFC00580.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp. aureus C160] gi|282764906|gb|EFC05031.1| response regulator arlR [Staphylococcus aureus A8117] gi|283460633|gb|EFC07723.1| response regulator arlR [Staphylococcus aureus subsp. aureus H19] gi|283470630|emb|CAQ49841.1| transcriptional regulatory protein ResD [Staphylococcus aureus subsp. aureus ST398] gi|283790329|gb|EFC29146.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp. aureus A017934/97] gi|285817093|gb|ADC37580.1| Putative response regulator ArlR [Staphylococcus aureus 04-02981] gi|290920858|gb|EFD97921.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp. aureus M1015] gi|291096235|gb|EFE26496.1| response regulator arlR [Staphylococcus aureus subsp. aureus 58-424] gi|291467137|gb|EFF09655.1| response regulator arlR [Staphylococcus aureus subsp. aureus M809] gi|294822362|gb|EFG38815.1| response regulator arlR [Staphylococcus aureus A9754] gi|294968950|gb|EFG44972.1| response regulator arlR [Staphylococcus aureus A8819] gi|295128286|gb|EFG57920.1| response regulator arlR [Staphylococcus aureus subsp. aureus EMRSA16] gi|296887502|gb|EFH26402.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297178621|gb|EFH37867.1| response regulator arlR [Staphylococcus aureus A8796] gi|297575996|gb|EFH94712.1| response regulator [Staphylococcus aureus subsp. aureus MN8] gi|298694710|gb|ADI97932.1| two-component response regulator [Staphylococcus aureus subsp. aureus ED133] gi|300886258|gb|EFK81460.1| response regulator [Staphylococcus aureus subsp. aureus TCH70] gi|302333028|gb|ADL23221.1| response regulator receiver [Staphylococcus aureus subsp. aureus JKD6159] gi|302751245|gb|ADL65422.1| response regulator receiver [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340451|gb|EFM06389.1| response regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312829810|emb|CBX34652.1| response regulator [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129124|gb|EFT85119.1| response regulator [Staphylococcus aureus subsp. aureus CGS03] gi|315195310|gb|EFU25697.1| response regulator [Staphylococcus aureus subsp. aureus CGS00] gi|315195878|gb|EFU26245.1| response regulator [Staphylococcus aureus subsp. aureus CGS01] gi|320139559|gb|EFW31429.1| response regulator receiver domain protein [Staphylococcus aureus subsp. aureus MRSA131] gi|320142167|gb|EFW33985.1| response regulator receiver domain protein [Staphylococcus aureus subsp. aureus MRSA177] gi|323444069|gb|EGB01680.1| two-component response regulator [Staphylococcus aureus O46] gi|329314093|gb|AEB88506.1| Response regulator ArlR [Staphylococcus aureus subsp. aureus T0131] gi|329727364|gb|EGG63820.1| response regulator ArlR [Staphylococcus aureus subsp. aureus 21172] gi|329730558|gb|EGG66944.1| response regulator ArlR [Staphylococcus aureus subsp. aureus 21189] gi|329733445|gb|EGG69777.1| response regulator ArlR [Staphylococcus aureus subsp. aureus 21193] Length = 219 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 45/219 (20%), Positives = 86/219 (39%), Gaps = 4/219 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + +++ + S D+ ++ L L Sbjct: 4 ILIVEDEQNLARFLELELTHENYNVDTEYDGQDGLDKALSHYYDLIILDLML--PSINGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR P+I I+ + D G DD + KP E+ R + Sbjct: 62 EICRKIRQQQSTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEEL-LARIRAILRRQP 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + I + + V G L + E +L L N+ + + QI + ++G + Sbjct: 121 QKDIIDVNGITIDKNAFKVTVNGAEIELTKTEYDLLYLLAENKNHVMQREQILNHVWG-Y 179 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + VE NVV+ +I LR KL+ +++ R +GY I Sbjct: 180 NSEVETNVVDVYIRYLRNKLKPYDRDKMIETVRGVGYVI 218 >gi|228991332|ref|ZP_04151289.1| Two-component response regulator [Bacillus pseudomycoides DSM 12442] gi|228768395|gb|EEM17001.1| Two-component response regulator [Bacillus pseudomycoides DSM 12442] Length = 238 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 39/228 (17%), Positives = 83/228 (36%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + +G S+ + + D++ I+ Sbjct: 5 ILIVDDEPEIIEILRLFLEMEGFSILEARDGKSALNFIQKFKIDLAIIDIM--MPNINGY 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI--------HHREILARVA 113 EL +I+R ++P+I +S + G DD ++KP ++ Sbjct: 63 ELIKIVRKEYKMPIIILSAKNQEMDKIMGLGLGADDFISKPFSLLEVLARIQAQLRRTYD 122 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 L ++ + + + +G L E ++L+ M G+ K QI Sbjct: 123 FNTDSLNQEGSQTCIDDLVLDHHSCILDKRGHEIKLSALEYKLLKLFMGEPGRIFTKKQI 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 F ++ ++N + IS+LR+K+ + + + R LGY Sbjct: 183 FENVWSDH-YYSDDNTIMVQISRLREKIEDHPRNPVYLKTIRGLGYRF 229 >gi|163940611|ref|YP_001645495.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163862808|gb|ABY43867.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] Length = 215 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 37/220 (16%), Positives = 96/220 (43%), Gaps = 11/220 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++ DD + A F +G + E + + D++ ++ + + Sbjct: 4 LIADDEQDMLKILKAYFEKEGFEVLLAKDGEEALQIFYDEKIDLAILDWMMPKS--SGIT 61 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + I+ +S V ++ ++ + L +G D+ V KP H ++ R ++L Sbjct: 62 VCQEIKKNSSVKVLMLTAKSESEDELAALQTGADEYVKKPFHPGVLITRA----KKLVQH 117 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 + + +++ + + + E ++++ + ++G + + ++ ++G FD Sbjct: 118 EDVIQVQDLKIDFTKNKVYKNEKELDITKTELQLIKCFLNHKGTILTRKKLLDIVWG-FD 176 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 EE V++H+ +LRKK+ + + + R LGYS++ Sbjct: 177 YFGEERTVDTHVRRLRKKIGE----NIIKTHRGLGYSLEE 212 >gi|295097669|emb|CBK86759.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 220 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 54/221 (24%), Positives = 101/221 (45%), Gaps = 7/221 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D L+++G G++G +L+ + + L S + ++ L K L Sbjct: 3 LLIVEDDLLLQEGLALALGNEGYALDCATTAAEADALIQSGEYSLVILDLGLPDKDGATL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120 L + R + P++ ++ +++ ++ DSG DD + KP E+ ARV A I R Sbjct: 63 -LCQWRRRGVENPVLILTARDAIEDRINGLDSGADDYLVKPFALAELQARVRALIRRYQG 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 S+N G I + + Q + + +E +L L+ G+ V + + IY Sbjct: 122 HSDNLLTDGDITLNLQTQQVLRQSQPVEVTPKEFALLTRLIMRSGQTVHRETLQQDIYSW 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D N +E HI LR+KL G D + + R +GY ++ Sbjct: 182 QD-DPGSNTLEVHIHNLRRKL----GKDRIKTVRGVGYRLE 217 >gi|229032881|ref|ZP_04188836.1| DNA-binding response regulator [Bacillus cereus AH1271] gi|228728426|gb|EEL79447.1| DNA-binding response regulator [Bacillus cereus AH1271] Length = 223 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 43/226 (19%), Positives = 90/226 (39%), Gaps = 12/226 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +++ +G + + DV ++ L Sbjct: 3 ILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALAKWNEG-PDVLILDVML--PDTDGY 59 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL R+ R + +P++ ++ + L G DD V KP ++ E++ RV + RR+K Sbjct: 60 ELLRLFREKNRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRVK 119 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEV-----FPLPRRERRILEYLMANRGKRVAKTQIFS 175 + I P+ + L RE + + ++N + + ++ Sbjct: 120 KAEVTVSHEVIGAGEITICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 179 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G F+ V+ + +LRKKL N + + + +GY ID Sbjct: 180 KVWG-FEYIGNTRAVDIMVQRLRKKLGNSG--EYIKTIYGVGYKID 222 >gi|254510565|ref|ZP_05122632.1| DNA-binding response regulator [Rhodobacteraceae bacterium KLH11] gi|221534276|gb|EEE37264.1| DNA-binding response regulator [Rhodobacteraceae bacterium KLH11] Length = 226 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 48/221 (21%), Positives = 97/221 (43%), Gaps = 6/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D +D FG++G +E + + D ++ L G L Sbjct: 5 LLIVEDDQDTRDFIAKGFGEEGYVVEVAADGREGLYHATDGGFDAIVLDRML--PGLDGL 62 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L + +RA + P++ ++ ++ + +G DD + KP +E+ AR+ A+ RR + Sbjct: 63 SLIKSMRAAGLKTPVLMLTAMSAVDERVKGLRAGADDYLVKPFSFQELHARIEALLRRPQ 122 Query: 121 VSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + + R G L RE +ILE+ + + + V++T + ++ Sbjct: 123 EAEETPTLICRDLEMDLLTRKVTRNGREITLTPREFQILEFFLRRKNRVVSRTMLLEGVW 182 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 + NVV+ HISKLR++L +++ R GY Sbjct: 183 D-YHFDPNTNVVDVHISKLRRQLDGDGADPVIETVRGAGYM 222 >gi|17546253|ref|NP_519655.1| phosphate regulon two-component response regulator transcription regulator protein [Ralstonia solanacearum GMI1000] gi|17428550|emb|CAD15236.1| probable phosphate regulon two-component response regulator transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 237 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 45/231 (19%), Positives = 83/231 (35%), Gaps = 10/231 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++++D + + G + E L S D+ ++ L G G Sbjct: 5 ILVVEDEPAIAELIAVNLQHAGHYPIRAYNAEQALSLMSDVLPDLVLLDWMLPGKSGVMF 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112 + R Q+P+I ++ Q + D+G DD V KP +E + R Sbjct: 65 AKELRANERTRQIPIIMLTARSEEQDKIMGLDAGADDYVTKPFSPKELLARIKAVLRRRA 124 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + N + L E R+L +LM + + +++Q Sbjct: 125 PQLTDDVVAINGLRLDPATHRVTAVNSESENPIKLDLGPTEFRLLHFLMTHPERVHSRSQ 184 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 + ++G VEE V+ HI +LR L +++ R GY + N Sbjct: 185 LLDQVWGDH-VFVEERTVDVHIKRLRAALAPGGYSSMIETVRGSGYRLARN 234 >gi|313889994|ref|ZP_07823631.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Streptococcus pseudoporcinus SPIN 20026] gi|313121652|gb|EFR44754.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Streptococcus pseudoporcinus SPIN 20026] Length = 242 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 45/231 (19%), Positives = 86/231 (37%), Gaps = 16/231 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L+DD + +G E L S D ++ L +E Sbjct: 6 LLVDDEEHILRLLDYHLHKEGYETELAEDGRTALKLAVSEHYDFILLDIML--PQLDGIE 63 Query: 63 LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV--------- 112 + + IRA P++ +S + + G DD + KP RE++ARV Sbjct: 64 VCKRIRAKGIETPIMMVSAKSDEFDKVLALELGADDYMTKPFSPRELMARVKAILRRTDK 123 Query: 113 --AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 R + + ++ + + + L +E +L YL+ + + + Sbjct: 124 EDNRQNDRERFAEESWIINDFLIYPERHEVYKDKILLNLTPKEFELLLYLVKHPNMTLTR 183 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 ++ I+G +D E +V+ HI KLR+K+ + + + R GY Sbjct: 184 ERLLERIWG-YDFGQETRLVDVHIGKLREKIEDDPKNPKCIKTIRGYGYQF 233 >gi|313895068|ref|ZP_07828625.1| response regulator ArlR [Selenomonas sp. oral taxon 137 str. F0430] gi|320529740|ref|ZP_08030818.1| response regulator receiver domain protein [Selenomonas artemidis F0399] gi|312975963|gb|EFR41421.1| response regulator ArlR [Selenomonas sp. oral taxon 137 str. F0430] gi|320137979|gb|EFW29883.1| response regulator receiver domain protein [Selenomonas artemidis F0399] Length = 228 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 50/221 (22%), Positives = 98/221 (44%), Gaps = 7/221 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D A + +G E ++ + D+ ++ L G +E Sbjct: 8 LIVEDEARIARFLQMELEHEGFEAETESNGTRAYERIIQEKFDIVLLDVML--PGMDGIE 65 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYRR 118 + R +R S VP+I ++ +++ ++ D G DD + KP + + Sbjct: 66 ICRRVREISNVPIIMLTARDAVEDRVEGLDIGADDYMTKPFAVPELIARLNNALRRRDLA 125 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++R + +F + +V GE+ L +RE +LEYL+ N+ + + QI ++ Sbjct: 126 EGDPSDRLTVKNLVMFLSRYEVQVDGEIVALTKREYDLLEYLLRNKRTVLTRDQILQEVW 185 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 G FD E NVV+ +I LR KL ++ + + R +GY Sbjct: 186 G-FDYTGETNVVDVYIRYLRAKLDDRFHQKYIYTVRGVGYV 225 >gi|229134404|ref|ZP_04263217.1| Two-component response regulator [Bacillus cereus BDRD-ST196] gi|229168317|ref|ZP_04296042.1| Two-component response regulator [Bacillus cereus AH621] gi|228615143|gb|EEK72243.1| Two-component response regulator [Bacillus cereus AH621] gi|228649025|gb|EEL05047.1| Two-component response regulator [Bacillus cereus BDRD-ST196] Length = 225 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 53/225 (23%), Positives = 97/225 (43%), Gaps = 10/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L++D +++ F ++G + + L + D+ ++ L Sbjct: 6 LLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELFAEHEIDLIMLDIML--PEIDGWS 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120 + R IR S VP+I ++ TL F+ G D+ V KP + ++AR + +R Sbjct: 64 VCRRIRKESAVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGA 123 Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 N I V R V GE L +E +L YLM N+G +++ + + Sbjct: 124 VGVSEENTMSLAGIEVNRLSRTVLVDGEEIILTHKEFELLVYLMENKGIVLSRQHLLDQL 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +G +D ++ V++HI KLR KL +K + + +GY + Sbjct: 184 WG-YDYYGDDRTVDTHIKKLRNKLGDK--AKHIGTVIRVGYKFEE 225 >gi|153956233|ref|YP_001396998.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|219856556|ref|YP_002473678.1| hypothetical protein CKR_3213 [Clostridium kluyveri NBRC 12016] gi|146349091|gb|EDK35627.1| Predicted transcriptional regulator [Clostridium kluyveri DSM 555] gi|219570280|dbj|BAH08264.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 230 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 38/226 (16%), Positives = 84/226 (37%), Gaps = 8/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD + +G ++ + + + ++ + Sbjct: 5 ILIADDNIEIIKILRPYIRKEGFTVISALNGKEALDKFEQYNPQIILLDIM--MPIFDGM 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH----REILARVAAIYR 117 E+ ++IR S P+I I+ + +SG DD + KP I A I Sbjct: 63 EVCKLIRLKSNTPIIMITARSEDSDKIWGLNSGADDYIVKPFSPGEVVARIKAVFRRITA 122 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + + + D ++ G L ++E +L L K V++ + I Sbjct: 123 HKNNEPSIIKYQHLELDIDNYSVKLDGVSVNLTKKEIEVLWVLSTYPNKIVSRDTLLDEI 182 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSIDW 222 +G+ D + V++HI ++R KL+ ++ + + +GY + Sbjct: 183 WGI-DYFGDPRTVDTHIKRIRAKLQLSEQYNRDIKTIWGMGYKFEV 227 >gi|325660808|ref|ZP_08149436.1| hypothetical protein HMPREF0490_00168 [Lachnospiraceae bacterium 4_1_37FAA] gi|325472882|gb|EGC76092.1| hypothetical protein HMPREF0490_00168 [Lachnospiraceae bacterium 4_1_37FAA] Length = 234 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 42/232 (18%), Positives = 90/232 (38%), Gaps = 15/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 V+++D +++G G ++ + + + + D++ ++ + Sbjct: 5 IVIVEDDKEIREGVEIYLRSQGYTVFQAENGKEGLAIIEREKIDLAIVDIM--MPVMDGI 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + +R + P+I +S + + G DD V KP E++ARV + RR Sbjct: 63 TMTMRLREKYEFPVIMLSAKSEEVDKVMGLNIGADDYVTKPFTPMELMARVNSQLRRYNR 122 Query: 122 SN----------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 G + V D + V G + E +IL L+ + G+ + Sbjct: 123 FQEALNKKEEKERSYMIGGLEVNEDRVEVLVDGRQVKMTPIEFKILLLLIKHPGRVFSAE 182 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 +I+ ++ ++AV + HI +R+K+ N V +GY ++ Sbjct: 183 EIYERVWN--EKAVNTETIMVHIRNIREKIEINPKEPKYVKVVWGIGYKMEK 232 >gi|302526266|ref|ZP_07278608.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. AA4] gi|302435161|gb|EFL06977.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. AA4] Length = 266 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 49/226 (21%), Positives = 89/226 (39%), Gaps = 11/226 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +LI+D V+DG G +++ + E + DV ++ L G E Sbjct: 41 LLIEDDRAVRDGLRLALTYQGHTVDAVETGEEGLARLAEDPADVVVLDLML--PGMDGFE 98 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-------HREILARVAAI 115 + R IRA +P+I ++ + ++G DD V KP R +L R Sbjct: 99 VCRRIRAAGDLPIIMLTARNDDIDVVAGLEAGADDYVVKPAQARVLEARIRAVLRRTGGE 158 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 R G + + DG G V L E R+L L + G+ +++ Q+ Sbjct: 159 PRGPDAKPGPERHGDLTIDRDGLVVSKHGTVIGLAPTELRLLLELSSAPGRVLSRQQLLE 218 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 +++ + +V++ + +LR K+ + V + R GY Sbjct: 219 SVWDQG-YLGDSRLVDACVQRLRAKIEDDPAKPVYVQTLRGFGYRF 263 >gi|227879192|ref|ZP_03997064.1| response regulator [Lactobacillus crispatus JV-V01] gi|256844016|ref|ZP_05549503.1| two-component system response regulator [Lactobacillus crispatus 125-2-CHN] gi|256849420|ref|ZP_05554852.1| two-component system response regulator [Lactobacillus crispatus MV-1A-US] gi|262046087|ref|ZP_06019050.1| two-component system response regulator [Lactobacillus crispatus MV-3A-US] gi|293380700|ref|ZP_06626749.1| putative regulatory protein VanR [Lactobacillus crispatus 214-1] gi|312976908|ref|ZP_07788657.1| DNA-binding response regulator [Lactobacillus crispatus CTV-05] gi|227861195|gb|EEJ68842.1| response regulator [Lactobacillus crispatus JV-V01] gi|256613921|gb|EEU19123.1| two-component system response regulator [Lactobacillus crispatus 125-2-CHN] gi|256713536|gb|EEU28525.1| two-component system response regulator [Lactobacillus crispatus MV-1A-US] gi|260573417|gb|EEX29974.1| two-component system response regulator [Lactobacillus crispatus MV-3A-US] gi|290922740|gb|EFD99693.1| putative regulatory protein VanR [Lactobacillus crispatus 214-1] gi|310896236|gb|EFQ45301.1| DNA-binding response regulator [Lactobacillus crispatus CTV-05] Length = 228 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 39/227 (17%), Positives = 89/227 (39%), Gaps = 9/227 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + ++G S + ++ D+ + ++ + Sbjct: 3 ILVVDDDKEIVELLSIYLKNEGYEPVAAYSGKEAITKLTTT-PDIVLMILDVMMPNMSGI 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------AI 115 ++ + +R S +P+I +S + +G DD V+KP + E++ARV Sbjct: 62 DVIKEVRKDSDIPIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRRSQK 121 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + + + + G+ L E IL L ++ + + +IF Sbjct: 122 QVKNEKPDILEVGPLVINRDSHEVKTIDGKTIQLTALEFGILYLLASHPNRVFSADEIFE 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 ++ + V V H+S LR K++ G D + + +GY ++ Sbjct: 182 RVW-QQESIVSAKTVMVHVSHLRDKIQKATDGEDVIQTVWGVGYKVE 227 >gi|83592618|ref|YP_426370.1| two component transcriptional regulator [Rhodospirillum rubrum ATCC 11170] gi|83575532|gb|ABC22083.1| two component transcriptional regulator, winged helix family [Rhodospirillum rubrum ATCC 11170] Length = 249 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 43/227 (18%), Positives = 90/227 (39%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + ++ A +G + + + S D+ ++ L G L Sbjct: 6 ILVVEDDPVGRETLAAYLRKEGYKVSDVEDGDSMRKVFSQQTVDLILLDIRL--PGVDGL 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 +L R IR S+V +I ++ + + G DD V KP + RE+LAR + RR Sbjct: 64 QLLREIRHQSEVGVIMVTGKDDEVDRIVALEMGADDYVTKPFNVRELLARAKNLLRRTLS 123 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPL-------PRRERRILEYLMANRGKRVAKTQIF 174 + +E + F+ + +F R E +L + G+ + + + Sbjct: 124 AREASEDENQKSFAGWTLDIPRRCLFAPDGSDVRLTRGEFELLCCFASRPGRVMTRDNLL 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + D A + V+ + +LR+K+ + + + +GY Sbjct: 184 DYV-SHRDWAPSDRTVDVLVGRLRRKIEADPKAPRHIITVHGIGYVF 229 >gi|305666163|ref|YP_003862450.1| response regulator DrrA [Maribacter sp. HTCC2170] gi|88707661|gb|EAQ99902.1| response regulator DrrA [Maribacter sp. HTCC2170] Length = 228 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 38/224 (16%), Positives = 86/224 (38%), Gaps = 10/224 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 +L+DD + + +G + N+ + + ++ + G + Sbjct: 8 ILLVDDEPDILEIVSYNLSSEGYQVFTANNGVEGVAKAKKKQPHLIILDVMMPEMDGIEA 67 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIY 116 E+ R + ++ + + F++G DD + KPI + ++++V Sbjct: 68 CEIIRKTVGLEDTIITFLTARGEDYSQVAGFEAGADDYITKPIKPKVLVSKVKALLRRFR 127 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + +++ G I + + G LPR+E +L L + K + I Sbjct: 128 KDSNSNDDIVSVGNIVINREEYKIINDGTEIILPRKEFELLSLLTSKPNKVFKREVILDK 187 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + V ++ HI KLR+K+ + D + + +GY Sbjct: 188 VWGN-EVVVGGRTIDVHIRKLREKIGD----DHFKTVKGVGYKF 226 >gi|332671154|ref|YP_004454162.1| winged helix family transcriptional regulator [Cellulomonas fimi ATCC 484] gi|332340192|gb|AEE46775.1| two component transcriptional regulator, winged helix family [Cellulomonas fimi ATCC 484] Length = 264 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 45/231 (19%), Positives = 85/231 (36%), Gaps = 19/231 (8%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + F +G +E + + D+ ++ L G LE Sbjct: 31 LVVEDEPAIAQAVAHRFSAEGWRVEVAADGPSGVSAATRVQPDLVVLDVML--PGIDGLE 88 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------------LA 110 + R I+A VP++ ++ L G DD + KP RE+ A Sbjct: 89 VCRQIQAERPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELVARTKALLRRQERA 148 Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 AA V + G + V R L E +L L + + + Sbjct: 149 ARAAEIAVAAVPDPPLVIGDVTVDRAQRRVTRGDREVHLTPTEFDLLVALANSSRTVLTR 208 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ + ++ D + V+SH+ LR+KL G D + + +GY+ + Sbjct: 209 ERLLAEVWDWVDASG-TRTVDSHVKALRRKL----GADLIRTVHGVGYAFE 254 >gi|111220157|ref|YP_710951.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Frankia alni ACN14a] gi|111147689|emb|CAJ59345.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Frankia alni ACN14a] Length = 240 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 48/228 (21%), Positives = 87/228 (38%), Gaps = 14/228 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + D G + + L AR D+ ++ L E Sbjct: 8 LVVDDEPNIVDLLRMALRFHGFDVLTAATGRSALQLAVQARPDLMILDVML--PDVDGFE 65 Query: 63 LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112 + R +RA Q VP++ ++ + + + G DD V KP E Sbjct: 66 VCRTLRAGGQSVPVVYLTARDAHRDKIAGLTYGGDDYVTKPFAVDELVARVRAVLRRTSP 125 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + D GE L E +L Y + N + +++ Q Sbjct: 126 PRPEPAPDPPATTLRFADVELDPDTHVVRRAGEPIELSPTEFTLLRYFLTNPNRVLSRVQ 185 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I A++ +D A E VV+ ++S LR+KL + G + ++R GY++ Sbjct: 186 ILDAVWS-YDFAGEPTVVDQYVSYLRRKLG-RHGPSLIHTQRGFGYAL 231 >gi|238917107|ref|YP_002930624.1| two-component system, OmpR family, response regulator ResD [Eubacterium eligens ATCC 27750] gi|238872467|gb|ACR72177.1| two-component system, OmpR family, response regulator ResD [Eubacterium eligens ATCC 27750] Length = 225 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 42/220 (19%), Positives = 87/220 (39%), Gaps = 6/220 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + ++ G ++ + D++ I ++ E Sbjct: 7 LVVDDESRMRKLVSDFLTRKGYAVIEAADGVEAVDTFMENK-DIALIILDVMMPRMDGWE 65 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV--NKPIHHREILARVAAIYRRLK 120 + R IR S+VP+I ++ L F+ G D+ + Sbjct: 66 VCRQIRKDSKVPIIMLTAKGEEMDELQGFECGADEYIAKPFSPKILTARVDAIIRRAYGV 125 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 SN E G I + ++ GE L +E +L Y + N+G +++ +I + ++ Sbjct: 126 DSNEIIEIGGITIDKAAHIVKIDGEEIELSYKEFELLTYFVENKGLALSREKILNNVW-N 184 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D + +++H+ KLRKK+ K D + + +GY Sbjct: 185 YDYYGDARTIDTHVKKLRKKMGEKG--DYIKTIWGMGYKF 222 >gi|256376753|ref|YP_003100413.1| two component transcriptional regulator, winged helix family [Actinosynnema mirum DSM 43827] gi|255921056|gb|ACU36567.1| two component transcriptional regulator, winged helix family [Actinosynnema mirum DSM 43827] Length = 229 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 48/225 (21%), Positives = 91/225 (40%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V + +G + + L S R D ++ L Sbjct: 3 ILVVDDEVAVAEAVTRTLRFEGYEVTTAHDGAQALDLVRSLRPDGVILDV--TMPVLGGL 60 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R +RA P++ ++ + + D+G DD + KP +E+LARV A+ RR Sbjct: 61 DACRALRASGDTTPVLMLTARAEVSDRVAGLDAGADDYLAKPFALQELLARVRALVRRGG 120 Query: 121 VSNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + A + +R + R+ L R E ILE + N +++ +F Sbjct: 121 YAGTAARSEALRFADLLLDAGTREVRRGDRQVALTRTEFSILETFLRNPRLVLSREAMFR 180 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G D N ++ ++ LR+KL + + R +GY + Sbjct: 181 TVWG-HDFGAGSNGLDVYVGYLRRKLEQDGEPRLIHTVRGVGYVL 224 >gi|206972806|ref|ZP_03233728.1| regulatory protein VanR [Bacillus cereus AH1134] gi|229193839|ref|ZP_04320763.1| hypothetical protein bcere0002_54670 [Bacillus cereus ATCC 10876] gi|206731690|gb|EDZ48890.1| regulatory protein VanR [Bacillus cereus AH1134] gi|228589616|gb|EEK47511.1| hypothetical protein bcere0002_54670 [Bacillus cereus ATCC 10876] Length = 231 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 44/228 (19%), Positives = 87/228 (38%), Gaps = 10/228 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + D ++ ++ + + + D++ ++ L L Sbjct: 6 LIVEDEREIADLVELYLKNENYTVFKYYTAKEALECIDKNVLDLAILDIML--PDVSGLT 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + IR P+I ++ + + G DD + KP E++ARV A RR K Sbjct: 64 ICQKIRDKHTYPIIMLTAKDTEVDKITGLTIGADDYITKPFRPLELIARVKAQLRRYKKY 123 Query: 123 NNRAETGPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 N + + + + L E IL L N+G V+ Q+F Sbjct: 124 NGVTAQNENVIVHSGLVINISTHECSLNEKPLSLTPTEFSILRILCENKGNVVSSEQLFH 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222 I+G + N + HI LR+K+ + + + +GY I+ Sbjct: 184 EIWGDEYFSKSNNTITVHIRHLREKMNDTVDNPKYIKTVWGIGYKIEK 231 >gi|104783258|ref|YP_609756.1| heavy-metal DNA-binding response regulator CzrR [Pseudomonas entomophila L48] gi|95112245|emb|CAK16972.1| heavy-metal DNA-binding response regulator CzrR [Pseudomonas entomophila L48] Length = 224 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 41/222 (18%), Positives = 89/222 (40%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D D ++G ++ ++ L D+ ++ L Sbjct: 3 LLIIEDEPRTADYLQQGLRENGYVVDCAHTGTDGLHLARQQPYDLVILDVNL--PELDGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119 + + +RA S ++ ++ + L + D G DD + KP E+ R Sbjct: 61 GVLQRLRAESSTRIMMLTAHGRLADRVKGLDLGADDYLLKPFEFPELLARIRSLLRRNDQ 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + + + + G+ L +E +L LM G+ +++TQI S ++ Sbjct: 121 HLQPSTLKVADLELDPGRHRAWRGGQRIDLTAKEFALLHLLMRQSGEVLSRTQIISLVWD 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + + NVVE I +LR K+ + + + R +GY ++ Sbjct: 181 M-NFDCDTNVVEVSIRRLRAKIDDPFEDKLIHTLRGVGYVLE 221 >gi|331269705|ref|YP_004396197.1| winged helix family two component transcriptional regulator [Clostridium botulinum BKT015925] gi|329126255|gb|AEB76200.1| two component transcriptional regulator, winged helix family [Clostridium botulinum BKT015925] Length = 224 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 41/221 (18%), Positives = 89/221 (40%), Gaps = 6/221 (2%) Query: 6 DDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLELP 64 +D +++ ++ + ++ + D+ ++ L G G V + Sbjct: 2 EDEEHIRELIKFNLENNNYKIIFASNGIDAVEIAKKELPDLILLDIMLPGKDGYDVCKEI 61 Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRRLKV 121 R + +I I+ + + G DD + KP RE++ARV L+ Sbjct: 62 RNNNDTYNISIIMITAKSEEIDKILGLELGADDYITKPFSIRELIARVKAVLRRTTLLQN 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 ++ + I V D + L +E ++E L+ N+GK + + + ++G + Sbjct: 122 NSRMYKFENIMVDFDQHKLFKDNKKVDLTLKEFELIEILVKNKGKIMTREYLLDKVWG-Y 180 Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 + E ++ HI LRKK+ + +++ R +GY + Sbjct: 181 EYVGETRTIDVHIRHLRKKIELDDKRPKFIETIRGVGYRFN 221 >gi|320658631|gb|EFX26325.1| transcriptional regulatory protein YedW [Escherichia coli O55:H7 str. USDA 5905] Length = 260 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 50/219 (22%), Positives = 97/219 (44%), Gaps = 3/219 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D ++ + G ++ + +L + ++ L G Sbjct: 40 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIML--PGMDGW 97 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + +R Q P+I ++ S+ + DSG +D + KP E+LARV A R+ Sbjct: 98 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 157 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 N+ E +R+ S + L R+E ++L L + G+ + +T I S I+G+ Sbjct: 158 LNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 216 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + N V+ I +LR K+ + + + R +GYS Sbjct: 217 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 255 >gi|300854363|ref|YP_003779347.1| two-component response regulator [Clostridium ljungdahlii DSM 13528] gi|300434478|gb|ADK14245.1| two-component response regulator [Clostridium ljungdahlii DSM 13528] Length = 231 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 46/228 (20%), Positives = 93/228 (40%), Gaps = 11/228 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD ++D ++G + + + + D+ ++ +E Sbjct: 7 LVVDDEKEIRDLVEIYLVNEGYKVLKASDGLEALQISNDNEVDLVILDIM--MPKMDGIE 64 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + +R +P+I +S + +G DD V KP + E++ARV + RR K Sbjct: 65 VCMRMRKSKNMPIIMLSAKSQDLDKILGLTTGADDYVVKPFNPLELVARVKSQLRRYKRL 124 Query: 123 NNRAETGPI-------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 N + + + +V + L RE ILE L +NRG + +I+ Sbjct: 125 NVPKKVDQEVIEVDDLMINTKNHQVKVGNKDVKLTPREFEILELLSSNRGVVFSIEKIYE 184 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 +++ D +N V HI K+R+K+ + + +GY ++ Sbjct: 185 SVW-KQDFFESDNTVMVHIRKIREKIEENPRRPRFIKTIWGVGYKVEK 231 >gi|291518264|emb|CBK73485.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Butyrivibrio fibrisolvens 16/4] Length = 229 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 43/227 (18%), Positives = 85/227 (37%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + + ++ E + D+ ++ L G Sbjct: 4 ILIIEDEEAIAELEKDYLELSNFEVDIEADGEKGLQKALAGNYDMYILDLML--PGIDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL + IR VP++ ++ + G DD + KP E++ARV A R + Sbjct: 62 ELCKRIREVKNVPILMVTAKKEEIDKIRGLGLGADDYITKPFSPSELVARVKAHLARYER 121 Query: 122 SNNRAETGPI-------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 R+ R + GE +E +L +L N +K Q+F Sbjct: 122 LVQSPNIQKDEISIRGLRIDKASRRVWINGEEKTFTAKEFDLLTFLAENPNVIYSKEQLF 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++G + + + V H++K+R+K+ N +++ +GY Sbjct: 182 ETLWGE-ESIGDISTVTVHVNKIREKIELNTSKPQYIETIWGVGYRF 227 >gi|289178766|gb|ADC86012.1| Two-component response regulator [Bifidobacterium animalis subsp. lactis BB-12] Length = 246 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 35/229 (15%), Positives = 77/229 (33%), Gaps = 16/229 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + ++G + D+ ++ L + Sbjct: 21 ILVVEDEPTLATAIAQRLTNEGWTARVAGDGATAVKAADKLHPDLIIMDLML--PVMDGI 78 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112 E + I A +P++ ++ + G DD ++KP RE Sbjct: 79 EATKRIEAQHPIPVLMLTARDDEADVVIGLGVGADDYMSKPFSMRELVARVRALLRRVDR 138 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 A + ++ + G + + R + G+ L E +L L + + Q Sbjct: 139 AKVIAHKSENDCILDFGTLVIDPAKRQVTLDGKEVHLTPTEFDLLTTLAKQPHSVLTREQ 198 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + ++ D A V+SH+ LR KL + + +GY+ + Sbjct: 199 LLEEVWDWVD-ASSTRTVDSHVKALRHKLGAST----IRTVHGVGYAFE 242 >gi|295836986|ref|ZP_06823919.1| DNA-binding response regulator RegX3 [Streptomyces sp. SPB74] gi|295826313|gb|EDY44378.2| DNA-binding response regulator RegX3 [Streptomyces sp. SPB74] Length = 260 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 45/223 (20%), Positives = 88/223 (39%), Gaps = 6/223 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L +D A + + +G +E + D+ ++ L G LE Sbjct: 40 LLAEDDASISEPLARALRREGYEVEVREDGPAALEAGTQGAIDLVVLDLGL--PGMDGLE 97 Query: 63 LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-HREILARVAAIYRRLK 120 + R +RA VP++ ++ T+ D+G DD V KP + A + R Sbjct: 98 VARRLRAEGLPVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAG 157 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + T +R+ + + E L +E +L L+ + G+ V + Q+ ++ Sbjct: 158 EAKEAPATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 217 Query: 181 FDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222 + ++ HIS LRKKL + + + R +G+ + Sbjct: 218 TWWS-STKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEK 259 >gi|253702308|ref|YP_003023497.1| two component heavy metal response transcriptional regulator, winged helix family [Geobacter sp. M21] gi|251777158|gb|ACT19739.1| two component heavy metal response transcriptional regulator, winged helix family [Geobacter sp. M21] Length = 224 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 45/223 (20%), Positives = 96/223 (43%), Gaps = 5/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + ++G S++ N E L + + ++ L +G Sbjct: 3 ILIVEDEQKAANYLKKGLTENGFSVDIANDGEDGLHLALTEVYSLIILDVMLPIRG--GW 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + + +RA P+I +S + + + G DD + KP E+LAR+ I RR Sbjct: 61 SIIKELRAAGNDVPVIFLSARDEVHDRVHGLELGADDYLVKPYAFSELLARIRIILRRCP 120 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + + + G L +E ++L ++ G+ +++T I ++G Sbjct: 121 LQQSESMKLADLELDLIRHKARRGGRSLDLTVKEFQLLALMLRRHGEVLSRTTISEQVWG 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + + + NVV+ I +LRKK+ + + + R +GY +D Sbjct: 181 I-NFDTDTNVVDVAIRRLRKKVDDPFPVKLIQTIRGVGYVLDE 222 >gi|187478540|ref|YP_786564.1| heavy metal sensing two-component sytem response regulator [Bordetella avium 197N] gi|115423126|emb|CAJ49657.1| heavy metal sensing two-component sytem,response regulator [Bordetella avium 197N] Length = 223 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 49/220 (22%), Positives = 95/220 (43%), Gaps = 4/220 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D D + G ++ + SA D+ ++ L G Sbjct: 3 ILIVEDEPKTADYLAGGLAESGYAVTVARDGRSAQHCFESALFDLVLLDVML--PGMDGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R+IR + P++ +S S+Q + + G DD + KP + E+LARV ++ RR V Sbjct: 61 EVLRVIRRRASTPVLFLSARDSVQDRVKGLELGGDDYLIKPFSYAELLARVRSLLRRGPV 120 Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + G + L +E +L L+ +G+ + +T I S ++ L Sbjct: 121 QCQDVLRLGDLEMVVGRFEVRRAGRLIRLTAKEFVLLRLLLERQGEVLTRTMIASHVW-L 179 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + NVV+ I +LR K+ + + R +GY + Sbjct: 180 MNFDCDTNVVDVAIRRLRMKIDEPYPDRLIHTVRGMGYRL 219 >gi|148545612|ref|YP_001265714.1| DNA-binding response regulator CreB [Pseudomonas putida F1] gi|148509670|gb|ABQ76530.1| two component transcriptional regulator, winged helix family [Pseudomonas putida F1] Length = 226 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 55/219 (25%), Positives = 94/219 (42%), Gaps = 5/219 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A + D + DG S E Q D+ ++ L Sbjct: 4 ILIVEDEAAIADTLVYALQADGHSTEWVTLGSAALDQQRQRPADLVILDIGL--PDISGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E R +R ++VP++ +S + + G DD V KP RE+ ARV AI +R+ Sbjct: 62 ETCRQLRRFTEVPVMFLSARDGEIDRVVGLEIGADDYVVKPFSPREVAARVRAILKRMAP 121 Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 ET + + + + L R E R+L+ L+ + ++ Q+ A+ G+ Sbjct: 122 RAEVVGETTLFHLDTLRMQITYRSQPLTLTRHEFRLLQCLLEQPQRVFSREQLLDAL-GV 180 Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGY 218 + E ++SHI LR KLR +P+ + R LGY Sbjct: 181 ASDVGYERTIDSHIKSLRAKLRQVAGDAEPIQTHRGLGY 219 >gi|186683435|ref|YP_001866631.1| two component transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186465887|gb|ACC81688.1| two component transcriptional regulator, winged helix family [Nostoc punctiforme PCC 73102] Length = 247 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 37/230 (16%), Positives = 85/230 (36%), Gaps = 13/230 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++ G + + E S D+ ++ Sbjct: 11 ILVVDDEASIRRILQTRLEMIGYHVVTASDGEEALSAWSRETPDLIVLDVM--MPKLDGY 68 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112 + +R S VP+I ++ + + + G DD + KP +E Sbjct: 69 GVCLELRKQSDVPIIMLTALADVADRITGLELGADDYMIKPFSPKELEARIASLLRRRFH 128 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + ++ G +++ + R + L E +LE L+ + G+ ++ + Sbjct: 129 KSDINTIIPNSLIIHVGNLKIDVNKRQVHKNEQRIRLTGIEFSLLELLVNHSGRVFSRLE 188 Query: 173 IFSAIYG-LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 I ++G + + VV+ HIS+L K+ + + + + + GY Sbjct: 189 ILQQLWGFVPGSHTDTRVVDVHISRLLTKVESDPNDPEFIITAKGSGYFF 238 >gi|160937479|ref|ZP_02084840.1| hypothetical protein CLOBOL_02370 [Clostridium bolteae ATCC BAA-613] gi|158439548|gb|EDP17298.1| hypothetical protein CLOBOL_02370 [Clostridium bolteae ATCC BAA-613] Length = 233 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 49/226 (21%), Positives = 92/226 (40%), Gaps = 6/226 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 + DD ++ ++G +E F + ++ D+ ++ G Sbjct: 5 IYVADDELHIRTLIQTFLVNEGYEVETFEDGKSLFEAFHASCPDLIILDIM--MPGMDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L IR S+VP+I +S + + G DD + KP E++ARV A++RR Sbjct: 63 ALCTAIRRESRVPIIIVSAKDAPMDRVTGITLGSDDYMVKPFLPLELVARVKALFRRAGY 122 Query: 122 SNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 A + R V G F + E L+YLM RG+ V+K + + Sbjct: 123 IRQDAGETLVCANLSLDPRSRCMTVDGAHFSVTPTEFAFLQYLMERRGEAVSKQVLLKEV 182 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 + L D ++ V + + +LR+K R +++ G+ ++ + Sbjct: 183 WELPDYDLDTRVADDLVKRLRRKFREAGCRAAIETVWGYGFRLEED 228 >gi|17232680|ref|NP_489228.1| two-component response regulator [Nostoc sp. PCC 7120] gi|17134327|dbj|BAB76887.1| two-component response regulator [Nostoc sp. PCC 7120] Length = 222 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 43/224 (19%), Positives = 94/224 (41%), Gaps = 12/224 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ +D + G + + S+ D+ ++ L G+ L Sbjct: 4 ILIAEDEPRIAAFIEKGLRSQGFTTAVATDAYSATNMALSSGFDLMILDLGL--PGKDGL 61 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIY 116 ++ +R +P+I ++ +Q + F++G DD + KP + AR+ Sbjct: 62 DVLEELRGQGENIPVIILTARDDIQDKVAGFEAGADDYLTKPFRFEELLVRVKARLRQSG 121 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + ++G I + R ++ + LP RE + E + G+ +++ Q+ Sbjct: 122 GSQAMEETVIKSGNIVLDLRSRKVKIGQDTIELPAREFTLAETFFRHPGQVLSREQLLDR 181 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G +D N+V+ ++ LRKKL N D +++ R +GY + Sbjct: 182 VWG-YDYDPGSNIVDVYVGYLRKKLGN----DLIETVRGMGYRL 220 >gi|170722646|ref|YP_001750334.1| two component transcriptional regulator [Pseudomonas putida W619] gi|169760649|gb|ACA73965.1| two component transcriptional regulator, winged helix family [Pseudomonas putida W619] Length = 231 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 49/223 (21%), Positives = 95/223 (42%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD ++ G + + + A+ D+ ++ L Sbjct: 7 LLVIDDEPQIRKFLRISLASQGYKVIEAATGSEGLAQAALAKPDLVVLDLGL--PDMDGQ 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R +R S VP++ +S + +D DSG +D V KP +E LAR+ A+ R++ Sbjct: 65 QVLRELREWSAVPVMVLSVRANELQKVDALDSGANDYVTKPFGIQEFLARIRALLRQVPQ 124 Query: 122 ---SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 S A GP+ V R ++G L R+E +L L + G+ + + Q+ I+ Sbjct: 125 AGGSEVTASFGPLTVDFAFRKVTLEGAEVALTRKEYALLAQLAGHPGRVITQQQLLKDIW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 G + + + LR+KL + + ++ +GY + Sbjct: 185 GPTHVE-NTHYLRIVVGHLRQKLGDDPTAPRFIITEAGVGYRL 226 >gi|318079812|ref|ZP_07987144.1| two-component system response regulator [Streptomyces sp. SA3_actF] Length = 227 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 52/222 (23%), Positives = 93/222 (41%), Gaps = 9/222 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +LI+D V+ G + S E ++A DV ++ L G LE Sbjct: 5 LLIEDDEPVRRAVTLGLRRQGHEVRAAASGEEGLAAFAAAVPDVVVLDWML--PGMDGLE 62 Query: 63 LPRII--RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118 + R + + VPL+ ++ + ++G DD V KP+ R + AR+ A Sbjct: 63 VCRRLRTPERAHVPLLLVTARGDDIDVVVGLEAGADDYVVKPVRARVLDARIRAVLRRLD 122 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + GP+ + G +G PL E R+L L A+ G+ +++ Q+ A++ Sbjct: 123 TPGTPPPETHGPLTIDRTGLRVAHEGAPVPLAPSELRLLLTLSASPGQVLSRQQLLEAVW 182 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + +V++ + +LR KL D V++ R GY Sbjct: 183 -EHSYHGDIRLVDACVKRLRNKL--AAAADRVETVRGFGYRF 221 >gi|304407986|ref|ZP_07389636.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] gi|304343005|gb|EFM08849.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] Length = 241 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 43/228 (18%), Positives = 87/228 (38%), Gaps = 13/228 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++I+D + +G + D+ ++ L G E Sbjct: 6 LVIEDEPTLARLLSYNLTQEGYETTVIDHGAEGLQAALQRSFDLIILDIML--PGLNGFE 63 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112 + +R + P+I ++ + + + G DD + KP E ++ Sbjct: 64 ILTKLRQNGIRTPIIILTARNAEEEVVQGLKHGADDYITKPFGVAELLARVSAVLRRTQL 123 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 ++ + G + +F + + + GE PL +E +L YL+ G V + Sbjct: 124 DEGKATVESNEKVISAGELSIFPEKYEVILNGESVPLRPKEFEVLLYLVQRPGMVVTRDD 183 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + ++G FD + V+ H+S LRKKL ++S R +GY + Sbjct: 184 LMNIVWG-FDYIGGQRTVDVHVSSLRKKLELGQQSVQIESIRGVGYKL 230 >gi|270290714|ref|ZP_06196938.1| two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP [Pediococcus acidilactici 7_4] gi|270280774|gb|EFA26608.1| two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP [Pediococcus acidilactici 7_4] Length = 234 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 44/227 (19%), Positives = 90/227 (39%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + ++ R D ++ L + Sbjct: 5 ILVVDDEPAIVTLLTYNLKQANYQVISVDNGVDAVKEVQRGRVDFVIMDLML--PQLDGV 62 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E + IR + Q+P+I ++ S + + G DD + KP +E+++R+ AI RR Sbjct: 63 EATKQIRKFNEQIPIIMLTAKSSEVDKILGLELGADDYLTKPFSPQELISRIKAILRRTN 122 Query: 121 VSNNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + P + + + L E R+L++L N + +++ QI Sbjct: 123 RVVDLKKIVPELPVTGVTIDFKRLTVQKNEQPVALTPNEFRLLKFLFQNSNQVLSRDQIL 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 ++G ++ + +V+ HIS LR KL + + + R GY Sbjct: 183 EQVWG-YEYGGQTRIVDMHISHLRDKLEDDPKHPRLIKTIRGFGYEF 228 >gi|167769639|ref|ZP_02441692.1| hypothetical protein ANACOL_00973 [Anaerotruncus colihominis DSM 17241] gi|167668000|gb|EDS12130.1| hypothetical protein ANACOL_00973 [Anaerotruncus colihominis DSM 17241] Length = 230 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 40/228 (17%), Positives = 88/228 (38%), Gaps = 10/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD + + + + N+ + + ++ G Sbjct: 4 ILIIDDDRELCALIKRSVQTEHIEADFCNTGKEGLQKLKEQEYQLVVLDVM--MPGMDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL------ARVAAI 115 E IR + +P++ + + + +G DD + KP E++ R Sbjct: 62 ETLEEIRKENSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRRYTR 121 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + + + +++ + R + F LP +E +L Y ++GK + K QI+ Sbjct: 122 FNHQAGAVQKLDFDGLQIDLENRSVTTENGTFELPPKEFDLLLYCAKHQGKILTKQQIYE 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 ++G + N + + IS+LRKKL N + + + +GY + Sbjct: 182 EVWGEEYFYDDSN-IMAIISRLRKKLEVNPSSPKYIQTVKGIGYRFNK 228 >gi|221064867|ref|ZP_03540972.1| two component heavy metal response transcriptional regulator, winged helix family [Comamonas testosteroni KF-1] gi|220709890|gb|EED65258.1| two component heavy metal response transcriptional regulator, winged helix family [Comamonas testosteroni KF-1] Length = 229 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 45/225 (20%), Positives = 100/225 (44%), Gaps = 8/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + + G++G ++ ++ L + D+ ++ L G L Sbjct: 3 LLVIEDETKLAEYLQKGLGEEGFVVDAAHNGIDGLHLATEQPYDLIILDGML--PGIDGL 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + +R Q P++ ++ ++ + +G DD + KP E++AR+ A+ RR Sbjct: 61 AVLAALRQSRQTPVLMLTARAQVEDRVRGLQAGADDYLVKPFAFSELVARIHALLRRGLQ 120 Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + E +R+ G+ L +E +L L+ +G+ +++T++ S Sbjct: 121 AQATPEATVLRMADLELDLLRHRATRAGQRLDLTAKEFNLLSLLLRRQGEVLSRTELASQ 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ + + E NVVE + +LR KL + + R +GY ++ Sbjct: 181 VWDM-NFDSETNVVEVAVRRLRLKLDAPFEQPLLHTVRGMGYVLE 224 >gi|114797880|ref|YP_760030.1| DNA-binding response regulator [Hyphomonas neptunium ATCC 15444] gi|114738054|gb|ABI76179.1| DNA-binding response regulator [Hyphomonas neptunium ATCC 15444] Length = 235 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 46/222 (20%), Positives = 91/222 (40%), Gaps = 7/222 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++I+D + + D G +E + + ++ D ++ L K L Sbjct: 13 LVIEDDTEMASFIEKVLLDAGHKVERASDGASGLAMARASEYDALIVDRMLPEK--DGLT 70 Query: 63 LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118 L + RA P + +S +Q + +G +D + KP E + + Sbjct: 71 LLQEFRAAGGTTPALFLSALGDVQNKVQGLRAGAEDYLGKPFAPAELAARVEALGRRQTN 130 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + G + + R G+ L RE R+LEYLM + G+ V +T + ++ Sbjct: 131 AEPPVTVLKAGDLEMNLLTRKVTRAGKKIDLQPREFRLLEYLMRHAGQVVTRTMLLEKVW 190 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ + NV++ HIS+LR K+ + + + R GY + Sbjct: 191 D-YNFDPQTNVIDVHISRLRAKIDKEFAEPLLQTVRGAGYRL 231 >gi|163942945|ref|YP_001647829.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163865142|gb|ABY46201.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] Length = 223 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 43/226 (19%), Positives = 90/226 (39%), Gaps = 12/226 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +++ +G + + + DV ++ L Sbjct: 3 ILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERW-NEQPDVLILDVML--PDTDGY 59 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL R+ R +P++ ++ + L G DD V KP ++ E++ RV + RR+K Sbjct: 60 ELLRLFREKERDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRVK 119 Query: 121 VSNNRAETGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 I + R V G+ L RE + + ++N + + ++ Sbjct: 120 KKEVPLNHEVIGAGNLLICPKERKLHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 179 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G F+ V+ + +LRKKL + + + +GY +D Sbjct: 180 KVWG-FEYIGNTRAVDIMVQRLRKKLGASG--EYIKTIYGVGYKLD 222 >gi|319653929|ref|ZP_08008023.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2] gi|317394465|gb|EFV75209.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2] Length = 238 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 42/226 (18%), Positives = 88/226 (38%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +L+DD + + + ++ ++ S D+ ++ L Sbjct: 6 LLLVDDEQAILHMLCTILQREQFRNIDTASTAAQALERCRSYTYDLILLDVML--PDRSG 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAI 115 ++ +IR + P+ ++ + L F G DD + KP + R Sbjct: 64 FDICPLIRETTDAPIFFLTARSTDLDKLSGFALGADDYITKPFNPLEVAARIKAHLRRHK 123 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + G I++ + + V G+ LP + ++L +L + + +K+Q++ Sbjct: 124 GSQPVPVQTIYDFGRIKINTSAGEVTVSGKRIDLPAQVYQLLLFLSKHPNQLFSKSQLYE 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++G E+N V HI KLR+K+ N + + R LGY Sbjct: 184 HVWGEEGF-GEDNTVMVHIRKLREKIESNPSSPCHIITVRGLGYKF 228 >gi|313906333|ref|ZP_07839675.1| two component transcriptional regulator, winged helix family [Eubacterium cellulosolvens 6] gi|313468839|gb|EFR64199.1| two component transcriptional regulator, winged helix family [Eubacterium cellulosolvens 6] Length = 243 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 40/236 (16%), Positives = 86/236 (36%), Gaps = 20/236 (8%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + +G + + L S D+ ++ L G L Sbjct: 5 ILIVEDESKLARYVELELLHEGYEVTKSENGREALELALSNHFDLILLDIML--PGLNGL 62 Query: 62 ELPRII---RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-------------- 104 E+ R + + + P+I ++ ++ + D+G D + KP Sbjct: 63 EVLRRLNKEQEMNPTPVILLTARDAVMDKVSGLDAGAVDYITKPFAIEELLARIRVALKL 122 Query: 105 HREILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANR 164 + ++ + +R+ G L RE +LE L+AN Sbjct: 123 YEARNRGASSGAVEKEKEEGVYTWNKLRLDEKRHTVHFDGHEVTLTNREFLMLETLLANM 182 Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +++ + + G +D E NV++ ++ LR K+ G + + R +GY I Sbjct: 183 DIVLSRDTLLEKVCG-YDYIGETNVIDVYVRYLRSKIDEAYGVKMIQTVRGVGYVI 237 >gi|317484213|ref|ZP_07943142.1| response regulator receiver domain-containing protein [Bilophila wadsworthia 3_1_6] gi|316924562|gb|EFV45719.1| response regulator receiver domain-containing protein [Bilophila wadsworthia 3_1_6] Length = 241 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 49/228 (21%), Positives = 86/228 (37%), Gaps = 13/228 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L+DD A + G SL+ + DV ++ L L+ Sbjct: 12 LLVDDDAKLCGLLRDYLEGFGFSLDVAEDASSGLEKAVANEYDVILLDMML--PDMDGLD 69 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +R P++ S + + + G DD V K RE+LARV A+ RR + Sbjct: 70 VLRRLREIGSTPIVIFSAQDEEASRIVGLEMGADDYVPKAFSPRELLARVRAVLRRAQPV 129 Query: 123 NNRAETGPI---------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + + G L E RIL + A+ G+ + + Sbjct: 130 QAERKEPEEDGVVRVRGLWMDRKSMKARMDGVPMDLTALEFRILFGMAAHPGRVFTRENL 189 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 G + + + V+ HIS LR+KL + + + R +GY++ Sbjct: 190 LELAVGR-EFSRYDRSVDMHISTLRRKLGDDPHNPAYLKTIRGMGYTL 236 >gi|302554205|ref|ZP_07306547.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces viridochromogenes DSM 40736] gi|302471823|gb|EFL34916.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces viridochromogenes DSM 40736] Length = 219 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 42/223 (18%), Positives = 94/223 (42%), Gaps = 11/223 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + +G +++ + S D+ ++ L G Sbjct: 1 MIVEDEKRLALSLARGLTAEGYAVDVVHDGREGLHQASEGTYDLVILDIML--PGLNGYR 58 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 + +RA P++ ++ + D+G DD + KP + ++AR+ Sbjct: 59 VCAALRAAGHEVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARIKALLRRRGV 118 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++ G ++V + R + + L +E +LE+L+ G+ V+K++I ++ Sbjct: 119 GAGASPVHVHGDLKVDTAARRVFLGDDEIALTAKEFSVLEHLVLRAGEVVSKSEILEHVW 178 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 F + N+VE ++S LR+KLR + + R GY ++ Sbjct: 179 D-FAYEGDPNIVEVYVSTLRRKLRA----GLIRTVRGAGYRLE 216 >gi|207724835|ref|YP_002255232.1| two-component response regulator protein [Ralstonia solanacearum MolK2] gi|207739498|ref|YP_002257891.1| two-component response regulator protein [Ralstonia solanacearum IPO1609] gi|206590060|emb|CAQ37021.1| two-component response regulator protein [Ralstonia solanacearum MolK2] gi|206592877|emb|CAQ59783.1| two-component response regulator protein [Ralstonia solanacearum IPO1609] Length = 222 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 41/222 (18%), Positives = 84/222 (37%), Gaps = 5/222 (2%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 M ++++D + E + ++ ++ L G+ Sbjct: 4 MILIVEDEPKLAALMGDYLRAAHYETEWVDDGTRAVQRVRETSPELVLLDLML--PGKDG 61 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R +RA S +P++ ++ L + G DD + KP RE+ R Sbjct: 62 LEICREVRAFSDLPIVMVTARVEEIDRLLGLELGADDYICKPFSPREL-VARIKTILRRV 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + + ++G+ L E R+L L G+ +++ + IY Sbjct: 121 QRGGAQPESLLLIDNTAYSATLRGQRLDLTPVEFRLLSALANAPGRILSRANLLEQIYDD 180 Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 V + V++H+ LR+K+ G + + S +GY +D Sbjct: 181 H-RIVTDRTVDTHVKNLRRKMELVSPGTEMIHSVYGVGYRLD 221 >gi|119964678|gb|ABM17107.1| response regulator receiver [Sulfobacillus acidophilus DSM 10332] Length = 229 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 38/224 (16%), Positives = 81/224 (36%), Gaps = 9/224 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L+DD A +++ G + DV ++ L + Sbjct: 2 LLVDDDAHIRELCRMYLEHAGFDVLEAGDGPTALTQLEQHPVDVMVLDLML--PEMDGFQ 59 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117 + +R P+I ++ + + D G DD + KP R + A + + Sbjct: 60 VLAEVRRRETWLPVIMLTALGDEEDRIMGLDQGADDYLIKPFSPRELVSRVRAVLRRAFL 119 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + V R + +V L RE +L +L ++ + ++ + + Sbjct: 120 APADEGKLLRHPGLIVDVAQRRVQAGDDVLNLTPREFDLLYFLASHPKQVFSREHLLDRV 179 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220 +GL D + V+ H+++LR+KL + +++ GY Sbjct: 180 WGL-DFDGDSRTVDVHVTRLRQKLLASNTPYEYLETVWGQGYRF 222 >gi|42781806|ref|NP_979053.1| transcription response regulator-like protein [Bacillus cereus ATCC 10987] gi|42737730|gb|AAS41661.1| transcription response regulator-like protein [Bacillus cereus ATCC 10987] Length = 221 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 44/223 (19%), Positives = 90/223 (40%), Gaps = 9/223 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D +++ ++ + + D+ ++ Sbjct: 6 ILVVEDDQEIQELIKQFLMTQQYTVVVASDGLEGMTQFNKQSFDLVLLDVM--MPNLNGF 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119 E+ ++IR+ S +P+I ++ + + FD G+DD + KP ++ RV A Sbjct: 64 EVAKMIRSQSNIPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSYD 123 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 NN +R+ D V L +E IL+ L N K + + I ++G Sbjct: 124 NNVNNHLIFKEVRIDVDAYRVYVDDVEIFLTTKEFEILQLLFQNERKVLTRENIVEKVWG 183 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D E ++++HI LRKKL + + + +GY +D Sbjct: 184 -YDYFGETRIIDTHIKNLRKKL----AIPYIKTIKGIGYKVDE 221 >gi|295693701|ref|YP_003602311.1| response regulator [Lactobacillus crispatus ST1] gi|295031807|emb|CBL51286.1| Response regulator [Lactobacillus crispatus ST1] Length = 228 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 40/227 (17%), Positives = 89/227 (39%), Gaps = 9/227 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + ++G S + S+ D+ + ++ + Sbjct: 3 ILVVDDDKEIVELLSIYLKNEGYEPIAAYSGKEAITKLSTT-PDIVLMILDVMMPNMSGI 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------AI 115 ++ + +R S +P+I +S + +G DD V+KP + E++ARV Sbjct: 62 DVIKEVRKDSDIPIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRRSQK 121 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + + + + G+ L E IL L ++ + + +IF Sbjct: 122 QVKNEKPDILEVGPLVINRDSHEVKTIDGKTIQLTALEFGILYLLASHPNRVFSADEIFE 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 ++ + V V H+S LR K++ G D + + +GY ++ Sbjct: 182 RVW-QQESIVSAKTVMVHVSHLRDKIQKATDGEDVIQTVWGVGYKVE 227 >gi|153954118|ref|YP_001394883.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|219854730|ref|YP_002471852.1| hypothetical protein CKR_1387 [Clostridium kluyveri NBRC 12016] gi|146346999|gb|EDK33535.1| Transcriptional regulator [Clostridium kluyveri DSM 555] gi|219568454|dbj|BAH06438.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 232 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 41/226 (18%), Positives = 85/226 (37%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D A G + + L + ++ L Sbjct: 7 ILVVDDEQKIVDVIRAYLEKAGYEVHSAYNGTEAVKLFEKISPALIVLDLML--PDISGE 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ +++R S+VP+I ++ +T L+ F+ G DD V KP ++++ARV A RR + Sbjct: 65 DICKMLRKKSRVPIIMLTAKVDEKTVLEGFNIGADDYVTKPFSPKQLVARVMAHLRRTEE 124 Query: 122 SNNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + G L E IL L+ K + ++ + Sbjct: 125 EAIPLSNILSFNNGDLVLNVIKHEVRKNGITVNLTSSEYNILMTLVKYPQKTFTREELVN 184 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 D + ++++H+ LR+K+ + + + +GY Sbjct: 185 LAL-EEDFNGFDRIIDAHVKNLRQKIEDNSREPKYILTVYKVGYRF 229 >gi|121593474|ref|YP_985370.1| two component transcriptional regulator [Acidovorax sp. JS42] gi|120605554|gb|ABM41294.1| two component transcriptional regulator, winged helix family [Acidovorax sp. JS42] Length = 242 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 53/228 (23%), Positives = 94/228 (41%), Gaps = 10/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS-AREDVSAIEAFLIGKGEKV 60 ++++D + D + G + E ++ D++ ++ L G Sbjct: 7 ILVVEDEQDIADVLLDYLRHAGYAPEHAADGRTALQALTAPQPPDLTLLDVML--PGIDG 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R R H+ P++ I+ L + G DD + KP RE++ARV A+ RR Sbjct: 65 LEVLRQARRHTDNPIVVITARVEEVDRLIGLELGADDYICKPFSPREVVARVKAVLRRRA 124 Query: 121 VSNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 A + + G + L RE +L L+A+ +++ Q+ Sbjct: 125 PPAQAAAQAELAYGALVLDEAQLQATLHGTLVALTPREWHLLRTLLAHPRSVLSRAQLLQ 184 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSID 221 Y + E V+SHI LR+KLR + G D + S +G++ D Sbjct: 185 HAYPDSPQEPNERAVDSHIKNLRRKLRSADPAGHDWIRSVYGVGFAFD 232 >gi|148658695|ref|YP_001278900.1| two component transcriptional regulator [Roseiflexus sp. RS-1] gi|148570805|gb|ABQ92950.1| two component transcriptional regulator, winged helix family [Roseiflexus sp. RS-1] Length = 245 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 43/225 (19%), Positives = 83/225 (36%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD + D + + + ++ DV ++ Sbjct: 21 ILIADDDPSIAMLIQVTLKDPRYEIVAVKNGLEALKAFNESKFDVVILDVM--MPYVDGF 78 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAIY 116 E + IR S VP+I ++ + F+ G DD + KP R Sbjct: 79 EACQRIRERSDVPIIILTARDGTDDIVHGFELGADDYITKPFKTAELIARVDAILRRVEG 138 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + +V+ G I + V+G+ L E +L +L AN G + +F Sbjct: 139 YKHRVAPPVVRVGEIEIDEPRHRVTVRGKEVNLTPMEFELLYFLAANAGHVFDRETLFRE 198 Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++G +D E N+V+ + +LR+K+ + + R +GY + Sbjct: 199 VWG-YDYVGETNLVDVCVRRLREKVEAEPSRPRMILTVRGVGYKM 242 >gi|331658014|ref|ZP_08358976.1| transcriptional activator protein CopR [Escherichia coli TA206] gi|331056262|gb|EGI28271.1| transcriptional activator protein CopR [Escherichia coli TA206] Length = 260 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 50/219 (22%), Positives = 97/219 (44%), Gaps = 3/219 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D ++ + G ++ + +L + ++ L G Sbjct: 40 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIML--PGMDGW 97 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + +R Q P+I ++ S+ + DSG +D + KP E+LARV A R+ Sbjct: 98 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 157 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 N+ E +R+ S + L R+E ++L L + G+ + +T I S I+G+ Sbjct: 158 LNSTLEISGLRMDSVSQSVSRNNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 216 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + N V+ I +LR K+ + + + R +GYS Sbjct: 217 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 255 >gi|253773085|ref|YP_003035916.1| transcriptional regulatory protein YedW [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253324129|gb|ACT28731.1| two component heavy metal response transcriptional regulator, winged helix family [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|260448922|gb|ACX39344.1| two component heavy metal response transcriptional regulator, winged helix family [Escherichia coli DH1] gi|315136606|dbj|BAJ43765.1| transcriptional regulatory protein YedW [Escherichia coli DH1] Length = 260 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 50/219 (22%), Positives = 96/219 (43%), Gaps = 3/219 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D ++ + G ++ + +L + ++ L G Sbjct: 40 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIML--PGMDGW 97 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + +R Q P+I ++ S+ + DSG +D + KP E+LARV A R+ Sbjct: 98 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 157 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 N+ E +R+ S L R+E ++L L + G+ + +T I S I+G+ Sbjct: 158 LNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 216 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + N V+ I +LR K+ + + + R +GYS Sbjct: 217 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 255 >gi|269836782|ref|YP_003319010.1| two component transcriptional regulator, winged helix family [Sphaerobacter thermophilus DSM 20745] gi|269786045|gb|ACZ38188.1| two component transcriptional regulator, winged helix family [Sphaerobacter thermophilus DSM 20745] Length = 224 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 45/224 (20%), Positives = 97/224 (43%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + D+G ++ + D++ ++ L + Sbjct: 3 ILVVEDEQRLARLLQRVLQDEGHTVHLAYDGVTGLDMALRGDYDLAILDLML--PDLDGV 60 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117 E+ R +RA + P++ ++ +++ + ++G DD + KP E++ARV R Sbjct: 61 EICRHLRAARVRTPILMLTARGAVEDRVTGLNAGADDYLVKPFAMAELVARVNALLRRAR 120 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + + + G+V L +E +LEYLM N G+ + ++QI + Sbjct: 121 GTDGPPTILQVADLTLDLLRHEARRGGQVIELTPKEFALLEYLMRNPGRALTRSQIIDRV 180 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + +D NVV+ +I LR K+ + + R +GY I+ Sbjct: 181 W-QYDLDSLSNVVDIYIHYLRDKIDRGFDRPLIKTVRGVGYKIE 223 >gi|229184109|ref|ZP_04311320.1| Two-component response regulator vanR [Bacillus cereus BGSC 6E1] gi|228599398|gb|EEK57007.1| Two-component response regulator vanR [Bacillus cereus BGSC 6E1] Length = 242 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 40/229 (17%), Positives = 84/229 (36%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + A +G + ++ E + ++ ++ ++ + Sbjct: 16 ILIVDDDQDIVRFVNANLMQEGFKVLSAHNGEEALKIINNNSIQLAILDIM--MPHMDEI 73 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARVA 113 EL R IR +P++ +S S + F +G DD + KP E Sbjct: 74 ELCRRIREKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 133 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 ++V + + + R + GE L + E IL + A + +I Sbjct: 134 FNQNAVQVIEKKISIRGLEIDEVSRTVMLYGETINLTKTEYDILYLMAAAENRVFTIEEI 193 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + +++ N V HI++LR K+ + + +GY I+ Sbjct: 194 YESVWKERAYE-SNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYKIE 241 >gi|307152178|ref|YP_003887562.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 7822] gi|306982406|gb|ADN14287.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7822] Length = 226 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 50/222 (22%), Positives = 95/222 (42%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + + D +E + L D+ ++ L + Sbjct: 3 ILLVEDDVSIAEAIEEDLSDQHYLVEVAYDGQEAWELVDVFEYDLILLDVML--PKIDGI 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119 L R R+ P++ I+ ++ + D+G DD + KP +E+ ARV A + R Sbjct: 61 SLCRKFRSRGCQTPILMITARDTVTDRVLGLDAGADDYLVKPFALQELSARVRALMRRGN 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 E G IR+ Q E PL +E ++LE+ + + + +++Q+ ++ Sbjct: 121 PSLPPVLEWGNIRLDPSSCRVYYQHEEIPLSPKEYKLLEFFLRHERRVFSRSQLLEHLW- 179 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220 F+ EE V++HI LR+KL D +++ LGY + Sbjct: 180 PFERLPEEATVKAHIRSLRQKLEACGAPSDVIETVYGLGYRL 221 >gi|323465648|gb|ADX69335.1| Alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Lactobacillus helveticus H10] Length = 238 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 45/229 (19%), Positives = 90/229 (39%), Gaps = 15/229 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G ++ E D+ ++ L + L Sbjct: 5 ILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVDEYDPDLMILDLML--PKKDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R +P+I ++ + + + G DD V KP +RE++ARV A RR + Sbjct: 63 EVAREVRQTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRDI 122 Query: 122 SNNRAETGPIRVFSD-----------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + E G L RE +L YL + G+ + + Sbjct: 123 VKKAEAANQDDTDKNIKIGNLVIMPDAYIVEKDGRKIELTHREFELLYYLAQHMGQVMTR 182 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGY 218 + ++G +D + V+ + +LR+K+ + + ++R +GY Sbjct: 183 EHLLQTVWG-YDYFGDVRTVDVTVHRLREKIEDNPIQPQVLVTRRGVGY 230 >gi|228985640|ref|ZP_04145793.1| hypothetical protein bthur0001_23320 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228774035|gb|EEM22448.1| hypothetical protein bthur0001_23320 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 231 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 89/228 (39%), Gaps = 10/228 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + D ++ ++ + + + D++ ++ L L Sbjct: 6 LIVEDEREIADLVELYLKNENYTVFKYYTAKEALECIDKNVLDLAILDIML--PDVSGLN 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + IR P+I ++ + + G DD + KP E++ARV A RR K Sbjct: 64 ICQKIRDKYNYPIIMLTAKDTEIDKITGLTIGADDYITKPFRPLELIARVKAQLRRYKKY 123 Query: 123 N-------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 N N + + + + + L E IL L N+G V+ Q+F Sbjct: 124 NGVTAQNENVIVHSGLVINISTHECSLNEKPLSLTPTEFSILRILCENKGNVVSSEQLFH 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222 I+G + N + HI LR+K+ + + + +GY I+ Sbjct: 184 EIWGDEYFSKSNNTITVHIRHLREKMNDTVDNPKYIKTVWGIGYKIEK 231 >gi|37523697|ref|NP_927074.1| two-component response regulator [Gloeobacter violaceus PCC 7421] gi|35214702|dbj|BAC92069.1| two-component response regulator [Gloeobacter violaceus PCC 7421] Length = 234 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 49/226 (21%), Positives = 96/226 (42%), Gaps = 11/226 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQS-SAREDVSAIEAFLI-GKGEKV 60 +++DD L+++ G++G S+ L S + D+ ++ L G + Sbjct: 11 LVVDDAELIRETVGMALGEEGYSVVLAEDGRQALDLVRNSDKVDLIVLDLMLPHLNGLDL 70 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L R + VP++ ++ + + + G DD + KP RE++AR A+ RR Sbjct: 71 CRLLRR--EGNAVPILMLTAKGTETDRVVGLEVGADDYLPKPFGMRELIARCRAVLRRHT 128 Query: 121 VSNNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + G + + + V+ L +E R+LE M N + ++ Q+ Sbjct: 129 RTQTQDNSAVLRCGDLCMNTQECRVRVRDVEVDLSPKEFRLLELFMRNPRRVWSREQLIE 188 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++G D + V+ HI LR+KL + + + + R GY Sbjct: 189 RVWG-PDFMGDSKTVDVHIRWLREKLEADPSHPEYLVTVRGFGYRF 233 >gi|255020960|ref|ZP_05293016.1| Phosphate regulon transcriptional regulatory protein PhoB [Acidithiobacillus caldus ATCC 51756] gi|254969751|gb|EET27257.1| Phosphate regulon transcriptional regulatory protein PhoB [Acidithiobacillus caldus ATCC 51756] Length = 247 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 43/221 (19%), Positives = 84/221 (38%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++++D +++ G + S+E E + ++ L G G Sbjct: 13 ILVVEDEEGIQELLRLSLQKQGFDVTCVASVEQAEEHLRDPMPHLIVLDWMLPGESGVAW 72 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118 R +P+I ++ + +SG DD ++KP RE+ ARV A Sbjct: 73 CRSLRRAERTQSLPIIVLTARGEEGDRVHGLESGADDYLSKPFSPRELGARVQALLRRSY 132 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++ G + V + E+ + E R+L N + ++ + I+ Sbjct: 133 GGLTPTHVRIGELLVDIKAHRVTLDDELVGMGPTEFRMLRLFATNPDRVYSREALLDHIW 192 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 G +EE V+ HI +LR+ L + +++ R GY Sbjct: 193 GR-QSFIEERTVDVHIRRLRRALAKVGYANIIETVRGEGYR 232 >gi|172041315|ref|YP_001801029.1| two-component system response regulator [Corynebacterium urealyticum DSM 7109] gi|171852619|emb|CAQ05595.1| two-component system response regulator [Corynebacterium urealyticum DSM 7109] Length = 256 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 46/223 (20%), Positives = 91/223 (40%), Gaps = 9/223 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + D G +E ++ + + + R D ++ G Sbjct: 33 LVVDDEDNISDLIKVSLKFQGFDVETADNGQTALEIAETYRPDAFILDVM--MPGMDGFT 90 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L +R P + ++ ++ + G DD V KP E++ R+ I RR+ Sbjct: 91 LLNKLREAGHDAPALFLTAKDGVEDRIHGLTIGADDYVTKPFSLEEVITRLRVILRRVAK 150 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEV----FPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 ++ + D + L E ++L YLM N ++K++I + Sbjct: 151 DDSEESSLITYEDITLDDDMHEVTKAGEVVDLSPTEFQLLRYLMVNAEVVLSKSKILDHV 210 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + +D + NVVES++S LR+K+ K + + R +GY + Sbjct: 211 W-NYDFGGDGNVVESYVSYLRRKIDTK-EPRLIHTVRGVGYVL 251 >gi|77408155|ref|ZP_00784901.1| DNA-binding response regulator [Streptococcus agalactiae COH1] gi|77173255|gb|EAO76378.1| DNA-binding response regulator [Streptococcus agalactiae COH1] Length = 223 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 43/220 (19%), Positives = 86/220 (39%), Gaps = 2/220 (0%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D + + L S++ ++ E S A DV ++ + G Sbjct: 3 ILVVEDEFDLNRSIVKLLKKQHYSVDSASNGEEALQFVSVAEYDVIILDVMMPKMDGFTF 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L+L R + + ++ D + F + V R + Sbjct: 63 LKLLRNKGSQVSILMLTARDAVEDRIAGLDFGADDYLVKPFEFGELMARIRAMLRRTNRQ 122 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 VS++ + I + + + L +E +LEYL +R + +++ QI ++ Sbjct: 123 VSSDDIQIQDITINLSTKQVWRNDNLIDLTAKEYEVLEYLARHRDQVLSRHQIREHVWD- 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D E N+++ I LR+KL N + +KR LGY I Sbjct: 182 YDYYGESNIIDVLIKNLRRKLDNNRDGSLIKTKRGLGYVI 221 >gi|320194319|gb|EFW68950.1| Putative two-component system response regulator YedW [Escherichia coli WV_060327] Length = 260 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 49/219 (22%), Positives = 97/219 (44%), Gaps = 3/219 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D ++ + G ++ + +L + ++ L G Sbjct: 40 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIML--PGMDGW 97 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + +R Q P+I ++ S+ + DSG +D + KP E+LARV A R+ Sbjct: 98 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHT 157 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 N+ E +++ S + L R+E ++L L + G+ + +T I S I+G+ Sbjct: 158 LNSTLEISGLKMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 216 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + N V+ I +LR K+ + + + R +GYS Sbjct: 217 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 255 >gi|160898293|ref|YP_001563875.1| osmolarity response regulator [Delftia acidovorans SPH-1] gi|160363877|gb|ABX35490.1| two component transcriptional regulator, winged helix family [Delftia acidovorans SPH-1] Length = 243 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 45/230 (19%), Positives = 93/230 (40%), Gaps = 14/230 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++D +G + + + D+ ++ GE L Sbjct: 11 ILVVDDDARIRDLLRRYLTQEGFEIMIAEDGKALNRILLRETVDLIVLDLM--MPGEDGL 68 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R +R A+ + P+I ++ + + G DD + KP + RE+LAR+ A+ RR Sbjct: 69 SICRRLRSANDRTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARIHAVLRRRP 128 Query: 121 VS---------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 N GP R + GE PL E +L+ L+ + + +++ Sbjct: 129 PQEAPGAPSGDNEVVSFGPFTFDLGTRVLQKNGEELPLTTGEFAMLKALVRHPRQPLSRE 188 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220 ++ G + + ++ +S+LRK + + + + +GY Sbjct: 189 KLALLARGR-EFEPFDRSLDVQVSRLRKLIEEDAAAPRYIQTVWGVGYVF 237 >gi|254255322|ref|ZP_04948638.1| Response regulator [Burkholderia dolosa AUO158] gi|124901059|gb|EAY71809.1| Response regulator [Burkholderia dolosa AUO158] Length = 225 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 44/221 (19%), Positives = 87/221 (39%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D F + G ++ L DV ++ L Sbjct: 3 ILIVEDEPKTGAYLKKGFEESGFCVDLAKDGAQGLLLAQEESYDVIVLDVTL--PVLDGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120 + + +R P++ ++ + + + G DD + KP E+LARV R Sbjct: 61 SVLKRLRDTHTTPVMFLTARGDVHDRVHGLELGADDYLVKPFAFVELLARVRTLARRGPP 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 R G + + R + L RE +L+ L G+ +++TQI S ++ + Sbjct: 121 RETERLAVGDLEIDVVRRRVKRGSVRIDLTPREFSLLQLLARRHGEVLSRTQIASYVWDM 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + NVVE I +LR K+ + + + R +GY ++ Sbjct: 181 -NFDSDTNVVEVAIRRLRAKVDDAFPLKLIHTVRGVGYVLE 220 >gi|229018790|ref|ZP_04175639.1| Two-component response regulator [Bacillus cereus AH1273] gi|229025034|ref|ZP_04181462.1| Two-component response regulator [Bacillus cereus AH1272] gi|228736240|gb|EEL86807.1| Two-component response regulator [Bacillus cereus AH1272] gi|228742540|gb|EEL92691.1| Two-component response regulator [Bacillus cereus AH1273] Length = 225 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 53/225 (23%), Positives = 97/225 (43%), Gaps = 10/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L++D +++ F ++G + + L + D+ ++ L Sbjct: 6 LLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELFAEHEIDLIMLDIML--PEIDGWS 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120 + R IR S VP+I ++ TL F+ G D+ V KP + ++AR + +R Sbjct: 64 VCRRIRKESAVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGA 123 Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 N I V R V GE L +E +L YLM N+G +++ + + Sbjct: 124 VGVTEENAMSLAGIEVNRLSRTVLVDGEEIILTHKEFELLVYLMENKGIVLSRQHLLDQL 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +G +D ++ V++HI KLR KL +K + + +GY + Sbjct: 184 WG-YDYYGDDRTVDTHIKKLRNKLGDK--AKHIGTVIRVGYKFEE 225 >gi|284006387|emb|CBA71623.1| two-component system, OmpR family, phosphate regulon response regulator [Arsenophonus nasoniae] Length = 234 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 36/222 (16%), Positives = 92/222 (41%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D +++ + +G + + + ++ + G G ++ Sbjct: 10 ILVVEDETAIREMVCFVLEQNGFQTVEADDYDSAIAQLIEPYPALILLDWMIPGGSGIQL 69 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + + + +P++ ++ + + + G DD + KP +E++ARV AI RR+ Sbjct: 70 IAHMKRDQLTRNIPIMMLTARGEEEDRVRGLEIGADDYLTKPFSPKELIARVNAILRRVS 129 Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 +N E +++ + E ++L + M + + + Q+ + ++ Sbjct: 130 AMASDNVIEMNGLKLDPASHRVMSDATSIEMGPTEYKLLYFFMTHPERVYNREQLLNYVW 189 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G+ + +E+ V+ HI +LRK L + + R GY Sbjct: 190 GV-NVYIEDRTVDVHIRRLRKALAVGGHEKMIQTVRGTGYRF 230 >gi|311744493|ref|ZP_07718293.1| response regulator [Aeromicrobium marinum DSM 15272] gi|311312112|gb|EFQ82029.1| response regulator [Aeromicrobium marinum DSM 15272] Length = 229 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 48/225 (21%), Positives = 94/225 (41%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V+D +G ++E + + D ++ L Sbjct: 3 ILVVDDDRAVRDSLRRSLEFNGYTVELASDGAEALARTPQVQPDAIVMDVM--MPRLGGL 60 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R +R A + VP++ ++ ++ +D D+G DD + KP E+LAR+ A+ RR Sbjct: 61 DATRALRSAGNDVPILVLTARDAVTDRVDGLDAGADDYLTKPFALEELLARLRALLRRSS 120 Query: 121 VSNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 S + P+ RD L R E +LE + + + ++ I Sbjct: 121 RSAELEDEAPLVFADLSLDPGTRDVRRGDRALSLTRTEFALLELFLRRPRRVLERSFILE 180 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G FD N +E ++ +R+KL + + + R +GY + Sbjct: 181 EVWG-FDFPTTANSLEVYVGYVRRKLEAEGESRLLHTVRGVGYVL 224 >gi|229156123|ref|ZP_04284221.1| hypothetical protein bcere0010_23120 [Bacillus cereus ATCC 4342] gi|228627306|gb|EEK84035.1| hypothetical protein bcere0010_23120 [Bacillus cereus ATCC 4342] Length = 231 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 89/228 (39%), Gaps = 10/228 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + D ++ ++ + + + D++ ++ L L Sbjct: 6 LIVEDEREIADLVELYLKNENYTVFKYYTAKEALECIDKNVLDLAILDIML--PDVSGLT 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + IR P+I ++ + + G DD + KP E++ARV A RR K Sbjct: 64 ICQKIRDKYNYPIIMLTAKDTEIDKITGLTIGADDYITKPFRPLELIARVKAQLRRYKKY 123 Query: 123 N-------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 N N + + + + + L E IL L N+G V+ Q+F Sbjct: 124 NGVTAQNENVIVHSGLVINISTHECSLNEKPLSLTPTEFSILRILCENKGNVVSSEQLFH 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222 I+G + N + HI LR+K+ + + + +GY I+ Sbjct: 184 EIWGDEYFSKSNNTITVHIRHLREKMNDTVDNPKYIKTVWGIGYKIEK 231 >gi|170697061|ref|ZP_02888157.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia ambifaria IOP40-10] gi|170138235|gb|EDT06467.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia ambifaria IOP40-10] Length = 223 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 43/221 (19%), Positives = 94/221 (42%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + +++ + + +L D+ ++ L Sbjct: 3 ILIVEDEPKMASYLRKGLAEASYTVDVAENGKDGLFLALHEDFDLVVLDVML--PELDGF 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +RA Q P++ ++ +++ + + G DD + KP + E LAR+ ++ RR Sbjct: 61 EVLRRLRAQKQTPVLLLTARDAIEDKVTGLELGADDYLLKPFAYAEFLARIRSLLRRAPR 120 Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + V R L +E +L+ L G+ + +T I S I+ + Sbjct: 121 NARDILQVADLEVDLIKRRVRRADNRIDLTAQEFSLLQLLAEREGEVLTRTFITSQIWDM 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + NVV++ I +LR K+ N + + R +GY ++ Sbjct: 181 -NFDSDTNVVDAAIKRLRAKIDNAYEKKLIHTIRGMGYVLE 220 >gi|118591897|ref|ZP_01549292.1| putative transcription regulator protein [Stappia aggregata IAM 12614] gi|118435540|gb|EAV42186.1| putative transcription regulator protein [Stappia aggregata IAM 12614] Length = 245 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 46/224 (20%), Positives = 92/224 (41%), Gaps = 12/224 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L+DD ++D L ++G + + D+ ++ GE L Sbjct: 26 ILLVDDDKRIRDLLSRLLKENGYRVTTAAHAAEARTCLTGLEFDLIILDVM--MPGETGL 83 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYR 117 EL +R S VP++ ++ + ++GVDD ++KP RE++ R+ + Sbjct: 84 ELAVSLREESSVPILMLTARSETPDRIAGLEAGVDDYLSKPFEPRELMLRIAAILRRGNQ 143 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + + GP S + + + L RE++IL G V + +I Sbjct: 144 QPVIVSEEIHFGPFSFNSARGELKNGEAMVRLTDREKQILSIFAEQPGATVPRHKIV--- 200 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 D + E V+ I++LR+K+ + + + R +GY + Sbjct: 201 --GDDSGLGERTVDVQINRLRRKIETDPGNPIYLQTVRGIGYRL 242 >gi|50841845|ref|YP_055072.1| response regulator [Propionibacterium acnes KPA171202] gi|282853420|ref|ZP_06262757.1| response regulator receiver domain protein [Propionibacterium acnes J139] gi|50839447|gb|AAT82114.1| response regulator [Propionibacterium acnes KPA171202] gi|282582873|gb|EFB88253.1| response regulator receiver domain protein [Propionibacterium acnes J139] gi|314922289|gb|EFS86120.1| response regulator receiver domain protein [Propionibacterium acnes HL001PA1] gi|314965397|gb|EFT09496.1| response regulator receiver domain protein [Propionibacterium acnes HL082PA2] gi|314982508|gb|EFT26601.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA3] gi|315091052|gb|EFT63028.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA4] gi|315094140|gb|EFT66116.1| response regulator receiver domain protein [Propionibacterium acnes HL060PA1] gi|315104789|gb|EFT76765.1| response regulator receiver domain protein [Propionibacterium acnes HL050PA2] gi|315106404|gb|EFT78380.1| response regulator receiver domain protein [Propionibacterium acnes HL030PA1] gi|327329342|gb|EGE71102.1| DNA-binding response regulator RegX3 [Propionibacterium acnes HL103PA1] Length = 226 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 48/223 (21%), Positives = 94/223 (42%), Gaps = 8/223 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++I+D ++ + +G + + + S D+ ++ G E Sbjct: 5 LIIEDEESYREATAFMLRKEGFEVNTAANGADGLEIYSRNGADIVLLDLM--MPGLPGTE 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +R V +I ++ S + + G DD V KP HRE++AR+ A+ RR Sbjct: 63 VCRQLRQRGNVGIIMVTARDSEIDKVVGLELGADDYVTKPFSHRELVARIRAVTRRGSPE 122 Query: 123 NNRAETGPI----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + R+ + + V+G V L +E +LE L+ N G+ + + + ++ Sbjct: 123 VEVSPDVLEESGVRMDVERHEVSVEGTVVRLALKEFDLLEVLLRNAGRVMTRASLIDRVW 182 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 G D + ++ HI +LR K+ + + + R LGY Sbjct: 183 GA-DYVGDTKTLDVHIKRLRAKIEDDPSRPVRITTVRGLGYKF 224 >gi|15894830|ref|NP_348179.1| response regulator [Clostridium acetobutylicum ATCC 824] gi|15024503|gb|AAK79519.1|AE007665_6 Response regulator (CheY-like receiver domain and HTH DNA-binding domain) [Clostridium acetobutylicum ATCC 824] gi|325508968|gb|ADZ20604.1| Response regulator (CheY-like receiver domain and HTH DNA-binding domain) [Clostridium acetobutylicum EA 2018] Length = 227 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 45/222 (20%), Positives = 94/222 (42%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D V + A +G ++ L + + ++ L Sbjct: 4 ILVVEDEENVLEIVRAYLEKEGYNVYCTTQGLDGIELFKKVKFQLVILDLML--PDIDGE 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ RI+R S V + ++ +L+ ++ + G D+ + KP RE+ ARV A++RR+ Sbjct: 62 EVCRILRRISDVYIFILTAKVALKDRIEGLNMGADEYLLKPCSPRELTARVNALFRRVFK 121 Query: 122 SNNRAETGPIRVFSDGRDP--EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 N + + ++ + L E IL L+ N+G+ +++ Q+ ++G Sbjct: 122 DENNTDFDDGNLQICSDKRIVRIKDQQISLTPNEFDILYALVLNKGRVLSREQLIERVFG 181 Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 L D + ++ HI +RKK+ + + LGY Sbjct: 182 L-DFDGFDRTIDVHIKNIRKKIEEDTKKPKYIITVTKLGYKF 222 >gi|313905592|ref|ZP_07838954.1| two component transcriptional regulator, winged helix family [Eubacterium cellulosolvens 6] gi|313469539|gb|EFR64879.1| two component transcriptional regulator, winged helix family [Eubacterium cellulosolvens 6] Length = 227 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 43/226 (19%), Positives = 84/226 (37%), Gaps = 10/226 (4%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 M ++D +++ + G + GF + + ++ ++ L GE Sbjct: 1 MIYCVEDDDSIRELMVYTLRASGFEVRGFQDASAFWNIMKEKKPELVLLDIML--PGEDG 58 Query: 61 LELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDV--VNKPIHHREILARVAAI 115 + + + +RA +P+I + S T+ DSG DD + + Sbjct: 59 ISILKKLRASPVTEDIPVIMATAKDSEYDTVIGLDSGADDYLSKPFGMMEMVSRIKAVLR 118 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 K + G I V V L +E +L+ L+ N G+ + + + Sbjct: 119 RSTPKKKQKLIQCGRIVVDEGKHTVTVNDRRVFLTLKEYELLKLLVENSGQVFTRDILLA 178 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +++G D E V+ HI LR KL + + R +GY ++ Sbjct: 179 SVWGA-DFVGETRTVDVHIGTLRTKLDECGN--MIKTVRGVGYKLE 221 >gi|229550855|ref|ZP_04439580.1| response regulator [Lactobacillus rhamnosus LMS2-1] gi|229315805|gb|EEN81778.1| response regulator [Lactobacillus rhamnosus LMS2-1] Length = 269 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 42/227 (18%), Positives = 92/227 (40%), Gaps = 9/227 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + ++G S + D++ + ++ + Sbjct: 44 ILIVDDDKEIVELLSIYVKNEGYEPIQAYSGKEAITKL-VTNPDIALMILDIMMPNMSGM 102 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + +R SQ+P+I +S + + +G DD V KP + E++ARV ++ RR + Sbjct: 103 DVVKEVRKDSQIPIIIVSAKTADMDKIQGLITGADDYVTKPFNPLEVMARVKSLLRRSQN 162 Query: 122 SNNRAETGPIRVFSDGRDPEVQG------EVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 +E + V + + L E IL L ++ + + +IF Sbjct: 163 EVTNSEPDVLEVGPLTIKKDSHEVTTLTGKQIQLTALEFGILYLLASHPNRVFSADEIFE 222 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 ++ + V V H+S LR K+ G +++ +GY ++ Sbjct: 223 RVW-QQESIVSAKTVMVHVSHLRDKIEEATDGEKVIETVWGVGYKVE 268 >gi|229199377|ref|ZP_04326042.1| DNA-binding response regulator [Bacillus cereus m1293] gi|228584091|gb|EEK42244.1| DNA-binding response regulator [Bacillus cereus m1293] Length = 224 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 42/226 (18%), Positives = 88/226 (38%), Gaps = 12/226 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +++ +G + S DV ++ L Sbjct: 4 ILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALEKWSEG-PDVLILDVML--PDTDGY 60 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL R+ R +P++ ++ + L G DD V KP ++ E++ RV + RR+K Sbjct: 61 ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRVK 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEV-----FPLPRRERRILEYLMANRGKRVAKTQIFS 175 I P+ + L RE + + ++N + + ++ Sbjct: 121 KKEVTVSHEVIGAGEITICPKERKVHVSGQEVQLTYREFNLCQLFVSNPQRVFMRDELLE 180 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G F+ V+ + +LRKKL + + + + +GY +D Sbjct: 181 KVWG-FEYIGNTRAVDIMVQRLRKKLGSSG--EYIKTIYGVGYKLD 223 >gi|240146754|ref|ZP_04745355.1| regulatory protein VanR [Roseburia intestinalis L1-82] gi|257201091|gb|EEU99375.1| regulatory protein VanR [Roseburia intestinalis L1-82] gi|291535944|emb|CBL09056.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Roseburia intestinalis M50/1] gi|291538436|emb|CBL11547.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Roseburia intestinalis XB6B4] Length = 234 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 46/230 (20%), Positives = 84/230 (36%), Gaps = 12/230 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + L +G + L + + + ++ L Sbjct: 5 ILVVDDDREIVRAIAILLEKEGYQVLKAYDGMQALELIAEQKVHLVIMDVM--MPKLDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 IR +P+I +S + G DD V KP + +E+ ARV + RR Sbjct: 63 SAVLKIRERKNIPIIVLSAKSEDTDKVLGLSMGADDYVAKPYNPQELAARVKSHLRRYTS 122 Query: 122 SNNRAETGPIRV--------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + ++ R V E L E +I+E LM G+ +I Sbjct: 123 LGDIHKADDDGCITNGRLEFHTNERVLYVDKEPVRLTATETKIMELLMKYPGRVFPAEEI 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 + ++ A E N V HI ++R+K+ N + + +GY I+ Sbjct: 183 YERVWNEQGYACE-NTVMVHIRRIREKIELNPKEPEYLKVVWGIGYKIEK 231 >gi|145222173|ref|YP_001132851.1| two component transcriptional regulator [Mycobacterium gilvum PYR-GCK] gi|315442611|ref|YP_004075490.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Mycobacterium sp. Spyr1] gi|145214659|gb|ABP44063.1| two component transcriptional regulator, winged helix family [Mycobacterium gilvum PYR-GCK] gi|315260914|gb|ADT97655.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Mycobacterium sp. Spyr1] Length = 238 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 49/224 (21%), Positives = 88/224 (39%), Gaps = 10/224 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD A + + G + ++ R D ++ G Sbjct: 15 LVVDDEANIVELLSVSLKFQGFEVHTASNGPAALDKAREVRPDAIILDVM--MPGMDGFG 72 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPI-----HHREILARVAAIY 116 L R +RA P + ++ SLQ + G DD V KP R + + Sbjct: 73 LLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRSGG 132 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 R + +R I + D + GE L E +L Y + N G ++K +I Sbjct: 133 RVQEPRTSRLTFADIELDEDTHEVWKAGEPVSLSPTEFTLLRYFIINAGTVLSKPKILDH 192 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +D + NVVES++S LR+K+ + + + R +GY + Sbjct: 193 VW-RYDFGGDVNVVESYVSYLRRKI-DTGDKRLLHTLRGVGYVL 234 >gi|291561456|emb|CBL40255.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [butyrate-producing bacterium SS3/4] Length = 226 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 46/224 (20%), Positives = 93/224 (41%), Gaps = 6/224 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ G + E + + D+S + ++ Sbjct: 6 ILMVDDEERMRKLVKDFLTIKGYRVLEAGDGEQAIDIFFKEK-DISLVILDVMMPKMDGW 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119 E + IR +SQVP+I ++ + L F+ GVD+ + KP + + Sbjct: 65 ETCKTIRRYSQVPIIMLTARSEERDELLGFELGVDEYITKPFSPKILVARIEAILRRGSG 124 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + E IRV D + V G L +E +L Y M N+G +++ +I + ++ Sbjct: 125 TSTGEILEADGIRVDKDAHEVTVDGRPVDLSNKEFELLTYFMENKGIALSREKILNNVW- 183 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 +D + +++H+ KLR KL K + + +GY ++ + Sbjct: 184 NYDYFGDARTIDTHVKKLRSKLGPKGDN--IKTVWGMGYKLEVD 225 >gi|317127238|ref|YP_004093520.1| two component transcriptional regulator, winged helix family [Bacillus cellulosilyticus DSM 2522] gi|315472186|gb|ADU28789.1| two component transcriptional regulator, winged helix family [Bacillus cellulosilyticus DSM 2522] Length = 224 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 43/219 (19%), Positives = 89/219 (40%), Gaps = 1/219 (0%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + G D ++ + + + + L Sbjct: 3 ILLVEDDKTIASGLEYSLQQDHFDTVLCYDIQSAQKIINHEISSIDLCLFDLSLPDGSGY 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL ++++ S P+I ++ Y + D G DD + KP RE+L+R+ ++ RR Sbjct: 63 ELCKLVKQKSDTPVIFLTAYDDEVNVVMGLDMGADDYITKPFRIRELLSRIKSVLRRYNK 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + I++ + GE + E R+L + G+ + + Q+ I+ + Sbjct: 123 QTTIIKLHNIQINTLEGKVYKNGEEIIITALEYRLLLIFANHVGQVLTREQLLERIWDVA 182 Query: 182 DEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYS 219 + V +N + +I +LR+KL + + + R LGY Sbjct: 183 GDYVNDNTLTVYIKRLREKLEDNPQKPTLIKTVRGLGYK 221 >gi|325261172|ref|ZP_08127910.1| DNA-binding response regulator [Clostridium sp. D5] gi|324032626|gb|EGB93903.1| DNA-binding response regulator [Clostridium sp. D5] Length = 230 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 45/227 (19%), Positives = 84/227 (37%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + D + N E D+ ++ L G Sbjct: 5 ILIIEDEESIADLEKDYLELSDFEVSVANDGEIGRRKALEEDFDLIILDLML--PGVDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R P+I +S + G DD + KP E++ARV A R + Sbjct: 63 EICRQVRDQKNTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARYER 122 Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N E +++ + R V GE +E +L +L + K ++F Sbjct: 123 LIGSNVEENEIIEIRGLKIDTTARRVWVNGEEKSFTTKEFDLLTFLAGHPNHVYTKEELF 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 I+ + + + V HI K+R+K+ + +++ +GY Sbjct: 183 QEIWDM-ESIGDIATVTVHIKKIREKVEYDTSHPQYIETIWGVGYRF 228 >gi|313895961|ref|ZP_07829515.1| putative transcriptional regulatory protein ResD [Selenomonas sp. oral taxon 137 str. F0430] gi|312975386|gb|EFR40847.1| putative transcriptional regulatory protein ResD [Selenomonas sp. oral taxon 137 str. F0430] Length = 235 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 38/228 (16%), Positives = 83/228 (36%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + + G S++ + + + + + + ++ L G Sbjct: 4 ILLVEDDTDIAELERDYLEASGFSVDISSDGDEGQRMALTGDYQLVLLDVML--PGADGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R +R +P++ +S + G DD + KP E+ ARV A R Sbjct: 62 AICRAVRKELDIPILMVSARLEDIDKIRALGLGADDYIVKPFSPSELAARVKAHITRYNR 121 Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 G + + V G L RE +L +L + +K ++ Sbjct: 122 LKGGEPTEPMSLRFGTLEIQPWTHRVFVAGREVHLASREFELLLFLAEHPQIVFSKETLY 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221 ++ L + + V H+++LR+K+ + + + GY + Sbjct: 182 DRVWDL-EAMGSTSTVSVHMNRLREKIEEDPSNPQWLQTVWGSGYRFN 228 >gi|297564623|ref|YP_003683595.1| winged helix family two component transcriptional regulator [Meiothermus silvanus DSM 9946] gi|296849072|gb|ADH62087.1| two component transcriptional regulator, winged helix family [Meiothermus silvanus DSM 9946] Length = 221 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 48/220 (21%), Positives = 91/220 (41%), Gaps = 8/220 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L+DD +++ A +G + S + L+ E Sbjct: 5 LLVDDDPAIREVLSAYLRQEGYEVVEAADGLEALGKI----PQASLVVLDLMLPRLSGWE 60 Query: 63 LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R +R + ++P++ ++ + + D G DD V KP RE++ARV A+ RR + Sbjct: 61 VARELRRDYPELPVLMLTAKGEEEERIRGLDLGADDYVTKPFSPREVVARVRALLRRSGL 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 A + R+ + GE L + E +L L + ++ ++ ++G Sbjct: 121 KAELAFGELVIR-PREREAYLAGEPLALSKLEFDLLLTLAQHPRLVWSRERLLERVWGT- 178 Query: 182 DEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 D + VV+ HI+ LRKKL +++ R +GY Sbjct: 179 DFPGVDRVVDVHIAGLRKKLGEDGDNPRYIETVRGVGYRF 218 >gi|295697098|ref|YP_003590336.1| two component transcriptional regulator, winged helix family [Bacillus tusciae DSM 2912] gi|295412700|gb|ADG07192.1| two component transcriptional regulator, winged helix family [Bacillus tusciae DSM 2912] Length = 243 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 49/229 (21%), Positives = 91/229 (39%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARE-DVSAIEAFLIGKGEKV 60 +++DD + G E E D+ ++ L Sbjct: 4 ILVVDDEEAILAVLQFHLEKAGYVAETATHPEEVFQRLREGEPVDLIILDHML--PDMSG 61 Query: 61 LELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L++ +I+R +P+I ++ + + G DD + KP RE+ AR+ A+ RR Sbjct: 62 LDICKILRQEGITIPIIFLTALDDEVERVLCLEMGADDYITKPFRPRELAARIRAVLRRY 121 Query: 120 -------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + + GP+ + V G+ L +E ++L +L + K V + Sbjct: 122 QLSGNGEQRTADVLHAGPVIIDLAKHTVTVFGQDVSLTLKEFQLLHHLAEHADKVVTRDT 181 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + I+G F + VV+ HIS LR K+ N + + R +GY + Sbjct: 182 LLDHIWG-FKYTGDTRVVDVHISHLRNKIEPNPASPQLIKTVRGVGYKL 229 >gi|39995559|ref|NP_951510.1| DNA-binding response regulator [Geobacter sulfurreducens PCA] gi|39982322|gb|AAR33783.1| DNA-binding response regulator [Geobacter sulfurreducens PCA] gi|298504564|gb|ADI83287.1| winged-helix transcriptional response regulator [Geobacter sulfurreducens KN400] Length = 224 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 43/220 (19%), Positives = 93/220 (42%), Gaps = 5/220 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D V ++ ++ + E + D+ ++ L + L Sbjct: 4 LVVEDEKKVSSFIKRGLEEEKYEVDAAFNGEEGLKMALDKGYDLIVLDVML--PKKDGLS 61 Query: 63 LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R +R P++ ++ S++ + DSG DD + KP E+LARV A+ RR + Sbjct: 62 VVRELRERKNSTPVLMLTAKDSVEDIVAGLDSGSDDYLTKPFAFAELLARVRALVRRSEQ 121 Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 R+ + + L +E +LEY M N + + +T I ++ Sbjct: 122 DRGAEIRFADLRLDPVTHKVWRKDKEIDLTAKEYSLLEYFMRNPNQVLTRTMIAEHVWD- 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + N+++ +++ LRKK+ + + + R +GY + Sbjct: 181 YTFDSFTNIIDVYVNYLRKKIDRESDKKLIHTVRGVGYIL 220 >gi|83745654|ref|ZP_00942712.1| Hypothetical Protein RRSL_04718 [Ralstonia solanacearum UW551] gi|83727731|gb|EAP74851.1| Hypothetical Protein RRSL_04718 [Ralstonia solanacearum UW551] Length = 245 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 41/222 (18%), Positives = 84/222 (37%), Gaps = 5/222 (2%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 M ++++D + E + ++ ++ L G+ Sbjct: 27 MILIVEDEPKLAALMGDYLRAAHYETEWVDDGTRAVQRVRETSPELVLLDLML--PGKDG 84 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R +RA S +P++ ++ L + G DD + KP RE+ R Sbjct: 85 LEICREVRAFSDLPIVMVTARVEEIDRLLGLELGADDYICKPFSPREL-VARIKTILRRV 143 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + + ++G+ L E R+L L G+ +++ + IY Sbjct: 144 QRGGAQPESLLLIDNTAYSATLRGQRLDLTPVEFRLLSALANAPGRILSRANLLEQIYDD 203 Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 V + V++H+ LR+K+ G + + S +GY +D Sbjct: 204 H-RIVTDRTVDTHVKNLRRKMELVSPGTEMIHSVYGVGYRLD 244 >gi|75763337|ref|ZP_00743078.1| Two-component response regulator vanRB [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228908456|ref|ZP_04072299.1| Two-component response regulator vanRB [Bacillus thuringiensis IBL 200] gi|74489174|gb|EAO52649.1| Two-component response regulator vanRB [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228851247|gb|EEM96058.1| Two-component response regulator vanRB [Bacillus thuringiensis IBL 200] Length = 228 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 47/223 (21%), Positives = 91/223 (40%), Gaps = 9/223 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D +++ ++ + + D+ ++ Sbjct: 13 ILVVEDDQEIQELIKQFLMTQHYTVVVASDGLEGMTQFNKQSFDLILLDVM--MPNLNGF 70 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119 E+ ++IR+ S VP+I ++ + + FD G+DD + KP ++ RV A Sbjct: 71 EVSKMIRSQSNVPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSYD 130 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 K NN +R+ D V L +E IL+ L N K + + I ++G Sbjct: 131 KNVNNHLIFKEVRIDVDAYRVYVNDVEIILTTKEFEILQLLFQNERKVLTRENIVEKVWG 190 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D E ++++HI LRKKL + + + +GY ID Sbjct: 191 -YDYFGETRIIDTHIKNLRKKL----AIPYIKTIKGIGYKIDE 228 >gi|313497996|gb|ADR59362.1| Two component transcriptional regulator [Pseudomonas putida BIRD-1] Length = 231 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 49/223 (21%), Positives = 94/223 (42%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD ++ G + + + + D+ ++ L Sbjct: 7 LLVIDDEPQIRKFLRISLASQGYKVLEAATGAEGLAQAALGKPDLVVLDLGL--PDMDGQ 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R +R S VP++ +S S +D D G +D V KP +E LARV A+ R++ Sbjct: 65 QVLRELREWSAVPVMVLSVRASEVQKVDALDGGANDYVTKPFGIQEFLARVRALLRQVPQ 124 Query: 122 ---SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 S A GP+ V R ++G L R+E +L L + G+ + + Q+ I+ Sbjct: 125 AGGSEVAASFGPLTVDFAFRRVTLEGVEVALTRKEYALLALLAGHPGRVITQQQLLKDIW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 G + + + + LR+KL + + ++ +GY + Sbjct: 185 GPTHAE-DTHYLRIVVGHLRQKLGDDPTAPRFIITEAGVGYRL 226 >gi|319762025|ref|YP_004125962.1| response regulator receiver [Alicycliphilus denitrificans BC] gi|330826156|ref|YP_004389459.1| winged helix family two component transcriptional regulator [Alicycliphilus denitrificans K601] gi|317116586|gb|ADU99074.1| response regulator receiver [Alicycliphilus denitrificans BC] gi|329311528|gb|AEB85943.1| two component transcriptional regulator, winged helix family [Alicycliphilus denitrificans K601] Length = 243 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 47/229 (20%), Positives = 92/229 (40%), Gaps = 14/229 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD A ++D +G + + + D+ ++ GE L Sbjct: 12 LVVDDDARIRDLLRRYLTQEGFEVMVAEDGKALNRILLRETVDLIVLDLM--MPGEDGLS 69 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R +RA S P+I ++ + + G DD + KP + RE+LAR+ A+ RR Sbjct: 70 ICRRLRAASDRTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARIHAVLRRRPP 129 Query: 122 S---------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 N GP R + GE PL E +L+ L+ + + +++ + Sbjct: 130 QEAPGAPSGDNEVVTFGPFTFDLGTRALQKNGEELPLTTGEFAMLKALVRHPRQPLSREK 189 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + G + + ++ IS+LRK + + + + +GY Sbjct: 190 LALLARGR-EFEPFDRSLDVQISRLRKLVEVDAAAPRYIQTVWGVGYVF 237 >gi|296111122|ref|YP_003621503.1| response regulator [Leuconostoc kimchii IMSNU 11154] gi|295832653|gb|ADG40534.1| response regulator [Leuconostoc kimchii IMSNU 11154] Length = 229 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 42/228 (18%), Positives = 91/228 (39%), Gaps = 9/228 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + ++G + ++ D++ + ++ L Sbjct: 3 ILVVDDDIEIAELLEIYLKNEGYEPIMAVDGKEALSKLNTN-PDIALMILDVMMPNMNGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ +++R S++P++ +S + +G DD V KP + E++ARV ++ RR + Sbjct: 62 EVVKVVRKDSRIPILMLSAKSGDMDKIQGLITGADDYVTKPFNPLEVMARVRSLLRRAEN 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF------PLPRRERRILEYLMANRGKRVAKTQIFS 175 S + + S + + L E IL L ++ + + IF Sbjct: 122 SVQDKTPDVLDIGSLFINKDSHEVKTADGDLVNLTALEFGILYLLASHPNRVFSADDIFE 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222 ++ + V V H+S LR K+ G + + +GY I+ Sbjct: 182 RVW-QQESVVSAKTVMVHVSHLRDKIEEATSGDQVIQTVWGVGYKIEV 228 >gi|167463992|ref|ZP_02329081.1| two component transcriptional regulator, winged helix family protein [Paenibacillus larvae subsp. larvae BRL-230010] Length = 230 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 44/227 (19%), Positives = 91/227 (40%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + + DG S+ + D+ ++ L G Sbjct: 5 ILIIEDDTSIAEIERDFLEIDGFETTIATDGIEGLNQASTEKFDLILLDLML--PGIDGY 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR ++VP++ ++ + G DD ++KP E++ARV A + + Sbjct: 63 EICRKIRGKTEVPILMVTARIEDADKIRGLGLGADDYISKPFSPTELVARVKANLAQYER 122 Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + GP+R+ + +E +L +L++N +K Q++ Sbjct: 123 LTTGSVVRSEEVQVGPVRINRLTHRVYINNHELEFKNKEYELLLFLISNPDIVFSKEQLY 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 I+G+ D + V HI++LR+K+ + + + GY Sbjct: 183 ERIWGM-DAIGDLKTVAVHINRLREKIEKDPQNPVYIQTVWGSGYHF 228 >gi|47569367|ref|ZP_00240050.1| DNA-binding response regulator VicR [Bacillus cereus G9241] gi|47553955|gb|EAL12323.1| DNA-binding response regulator VicR [Bacillus cereus G9241] Length = 223 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 42/226 (18%), Positives = 88/226 (38%), Gaps = 12/226 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +++ +G + + DV ++ L Sbjct: 3 ILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALEKWNEG-PDVLILDVML--PDTDGY 59 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL R+ R +P++ ++ + L G DD V KP ++ E++ RV + RR+K Sbjct: 60 ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRVK 119 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEV-----FPLPRRERRILEYLMANRGKRVAKTQIFS 175 I P+ + L RE + + ++N + + ++ Sbjct: 120 KKEVTVSHEVIGAGEITICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 179 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G F+ V+ + +LRKKL N + + + +GY +D Sbjct: 180 KVWG-FEYIGNTRAVDIMVQRLRKKLGNSG--EYIKTIYGVGYKLD 222 >gi|296536395|ref|ZP_06898497.1| response regulator [Roseomonas cervicalis ATCC 49957] gi|296263277|gb|EFH09800.1| response regulator [Roseomonas cervicalis ATCC 49957] Length = 226 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 52/222 (23%), Positives = 96/222 (43%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D A V + G ++E + ++ + D+ ++ L G G + Sbjct: 3 ILLVEDDAEVGRFVKKGLQEAGHTVEHAANGRDGLFMAAGESFDLLVLDRMLPG-GVDGV 61 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L +R + P++ +S + + +G DD + KP E+LARV A+ RR Sbjct: 62 RLVETLRGQGNHTPVLFLSALGGVDERVKGLKAGGDDYLVKPFAFAELLARVEALGRRPA 121 Query: 121 VSNNRAETGPIR--VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 V + R G + RE R+LE+LM + G+ V +T + ++ Sbjct: 122 VDAPATRLKVADLELDLLSRTVTRAGRKIDIQPREFRLLEHLMRHAGQVVTRTMLLEKVW 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + NV++ H+S+LR+KL + + R GY I Sbjct: 182 D-YHFDPQTNVIDVHVSRLRQKLDKGQDKPLIHTVRNAGYMI 222 >gi|320010070|gb|ADW04920.1| two component transcriptional regulator, winged helix family [Streptomyces flavogriseus ATCC 33331] Length = 237 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 45/236 (19%), Positives = 94/236 (39%), Gaps = 25/236 (10%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 + ++D ++++ G ++ + R D++ ++ + G + Sbjct: 7 LFVEDDDVIREATQLALERVGFTVTAVPDGLEGLEAFRADRPDIALLDVMV--PGLDGVS 64 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R IR S VP+I +S + ++G DD V KP ++AR+ A+ RR + Sbjct: 65 LCRRIRDESTVPVIMLSARADAIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRRFGHA 124 Query: 123 NNRAE------------------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANR 164 G + + ++G + QG L E R+L Sbjct: 125 TGTGPGAPAATGGPQDGAGGVLVFGDVEIDTEGMEVRRQGAHVGLTPTEMRLLLEFSTAP 184 Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G +++ ++ ++ + + VV+ H+ +LR K+ G D +++ R GY + Sbjct: 185 GTVLSRDKLLERVWD-YGWGGDTRVVDVHVQRLRTKI----GQDRIETVRGFGYKL 235 >gi|229014220|ref|ZP_04171341.1| Two-component response regulator vanRB [Bacillus mycoides DSM 2048] gi|229076416|ref|ZP_04209380.1| Two-component response regulator vanRB [Bacillus cereus Rock4-18] gi|229135864|ref|ZP_04264632.1| Two-component response regulator vanRB [Bacillus cereus BDRD-ST196] gi|229169751|ref|ZP_04297451.1| Two-component response regulator vanRB [Bacillus cereus AH621] gi|228613790|gb|EEK70915.1| Two-component response regulator vanRB [Bacillus cereus AH621] gi|228647604|gb|EEL03671.1| Two-component response regulator vanRB [Bacillus cereus BDRD-ST196] gi|228706703|gb|EEL58912.1| Two-component response regulator vanRB [Bacillus cereus Rock4-18] gi|228747174|gb|EEL97056.1| Two-component response regulator vanRB [Bacillus mycoides DSM 2048] Length = 216 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 43/221 (19%), Positives = 96/221 (43%), Gaps = 11/221 (4%) Query: 5 IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64 I+D +++ +++ + L D+ ++ L + Sbjct: 2 IEDNPDIQELIREFLMAQNFTVDVVGAGTEGILLFQKNSYDLVLLDVML--PDIDGYSIC 59 Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYRRLK 120 +I+R S VP+I ++ + ++ + F+ G+DD + KP H+ + RV + Sbjct: 60 KIMRGQSDVPIIMLTGLHNEESEIKGFELGIDDYITKPFHYTVFIKRVEAVLRRAATKEA 119 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + + + S V G L +E I+ L+ NRGK ++++ + + ++G Sbjct: 120 EAATILQFHELMLNSTAYAAYVHGNQIELTTKEFEIIYTLLQNRGKVLSRSDLLNKVWG- 178 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ + V+++HI LRKKL + + + +GY I+ Sbjct: 179 YEHYGDVRVIDTHIKNLRKKLEIP----YIKTVKGIGYKIE 215 >gi|194440153|ref|ZP_03072201.1| heavy metal response regulator [Escherichia coli 101-1] gi|256022375|ref|ZP_05436240.1| transcriptional regulatory protein YedW [Escherichia sp. 4_1_40B] gi|293415278|ref|ZP_06657921.1| two-component system [Escherichia coli B185] gi|194420916|gb|EDX36955.1| heavy metal response regulator [Escherichia coli 101-1] gi|291432926|gb|EFF05905.1| two-component system [Escherichia coli B185] gi|324018823|gb|EGB88042.1| transcriptional activator protein Irlr [Escherichia coli MS 117-3] Length = 260 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 50/219 (22%), Positives = 97/219 (44%), Gaps = 3/219 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D ++ + G ++ + +L + ++ L G Sbjct: 40 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIML--PGMDGW 97 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + +R Q P+I ++ S+ + DSG +D + KP E+LARV A R+ Sbjct: 98 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 157 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 N+ E +R+ S + L R+E ++L L + G+ + +T I S I+G+ Sbjct: 158 LNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 216 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + N V+ I +LR K+ + + + R +GYS Sbjct: 217 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 255 >gi|167768194|ref|ZP_02440247.1| hypothetical protein CLOSS21_02750 [Clostridium sp. SS2/1] gi|317499089|ref|ZP_07957368.1| response regulator receiver domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] gi|167709718|gb|EDS20297.1| hypothetical protein CLOSS21_02750 [Clostridium sp. SS2/1] gi|291560216|emb|CBL39016.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [butyrate-producing bacterium SSC/2] gi|316893609|gb|EFV15812.1| response regulator receiver domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 233 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 46/229 (20%), Positives = 84/229 (36%), Gaps = 11/229 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + D ++ ++ F + + D++ ++ L E Sbjct: 7 LVVDDEKEIADFIELYLKNENYNVHKFYNGKDALACVEHENIDLAILDVML--PDIDGFE 64 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + IR P+I ++ S ++ G DD + KP E++ARV A RR Sbjct: 65 ILKQIRLTHNFPVIMLTAKVSSMDKINGLTLGADDYIEKPFEPLELMARVKAQLRRFTRY 124 Query: 123 NNRAETGPIRV--------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N+ + E L E IL L NRGK ++ +F Sbjct: 125 NDGSGMNQEDTLEIAGLILNRATHQCTYGEEEITLTPLEFSILWILTQNRGKVISSENLF 184 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222 ++ N V HI LR+KL + + + +GY ++ Sbjct: 185 EQVWKEKYFKNNNNTVMVHIRHLREKLGEVMGHKELIKTVWGVGYKVEE 233 >gi|254496481|ref|ZP_05109357.1| transcriptional regulatory protein CpxR [Legionella drancourtii LLAP12] gi|254354298|gb|EET12957.1| transcriptional regulatory protein CpxR [Legionella drancourtii LLAP12] Length = 226 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 88/224 (39%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD + D +G + E + D ++ L Sbjct: 5 ILIIDDDTELTDLLTQYLEPEGFHAVCVHDGENGVKKALNQPFDAIILDVML--PKLNGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 E+ + IR H + P++ ++ + + G DD + KP + RE++AR+ ++ Sbjct: 63 EVLKAIREHLETPVLMLTARGDDIDRIVGLEIGADDYLPKPCNPRELVARLRAILRRTQK 122 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + E I V R + G L E ILE L+ + G+ +K ++ Sbjct: 123 IPAARPIIEQHNIVVDCSKRHVTLAGNYLELTNAEFNILEMLIKSPGQAFSKEELTEYAL 182 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYSID 221 G + ++ HIS LR KL + +P+ + R GY + Sbjct: 183 GRK-YTAYDRSIDVHISNLRNKLGDNPQGEPIVKTVRGFGYLFN 225 >gi|22538256|ref|NP_689107.1| DNA-binding response regulator [Streptococcus agalactiae 2603V/R] gi|25012116|ref|NP_736511.1| DNA-binding response regulator [Streptococcus agalactiae NEM316] gi|76798542|ref|ZP_00780775.1| Two-component response regulator czcR [Streptococcus agalactiae 18RS21] gi|77413189|ref|ZP_00789387.1| DNA-binding response regulator [Streptococcus agalactiae 515] gi|22535169|gb|AAN00980.1|AE014287_20 DNA-binding response regulator [Streptococcus agalactiae 2603V/R] gi|24413660|emb|CAD47740.1| Unknown [Streptococcus agalactiae NEM316] gi|76586106|gb|EAO62631.1| Two-component response regulator czcR [Streptococcus agalactiae 18RS21] gi|77160729|gb|EAO71842.1| DNA-binding response regulator [Streptococcus agalactiae 515] Length = 223 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 43/220 (19%), Positives = 86/220 (39%), Gaps = 2/220 (0%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D + + L S++ ++ E S A DV ++ + G Sbjct: 3 ILVVEDEFDLNRSIVKLLKKQHYSVDSASNGEEALQFVSVAEYDVIILDVMMPKMDGFTF 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L+L R + + ++ D + F + V R + Sbjct: 63 LKLLRNKGSQVSILMLTARDAVEDRIAGLDFGADDYLVKPFEFGELMARIRAMLRRANRQ 122 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 VS++ + I + + + L +E +LEYL +R + +++ QI ++ Sbjct: 123 VSSDDIQIQDITINLSTKQVWRNDNLIDLTAKEYEVLEYLARHRDQVLSRHQIREHVWD- 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D E N+++ I LR+KL N + +KR LGY I Sbjct: 182 YDYYGESNIIDVLIKNLRRKLDNNRDGSLIKTKRGLGYVI 221 >gi|169835992|ref|ZP_02869180.1| DNA-binding response regulator [candidate division TM7 single-cell isolate TM7a] Length = 218 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 50/222 (22%), Positives = 90/222 (40%), Gaps = 10/222 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D V+ G G ++ S E + A DV ++ L G + Sbjct: 5 ILLVEDEPAVRQGTEQFLRQRGFTVVTATSGEEALEKFTGA--DVIILDIML--PGMSGI 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120 E+ IR S VP++ ++ T + FD DD ++KP + R+ A + R+ Sbjct: 61 EVLHRIRQTSDVPVLMLTALHDEPTQIASFDELADDYMSKPFSLVILEKRIGALLRRQQS 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 V G V G L +E ++L+ L+ N ++ I ++ Sbjct: 121 VKKTLWRRGLASVDFAAYQGFYDGTDAHLKPKEVQLLKLLVDNPNMVWSRQAIIDKLW-R 179 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 DE + V++ +I LRKKL D + + + +GY + Sbjct: 180 DDEVPFDRVIDVYIKNLRKKL----HLDCIITVKGVGYRYEE 217 >gi|170759580|ref|YP_001788664.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] gi|169406569|gb|ACA54980.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] Length = 230 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 39/227 (17%), Positives = 87/227 (38%), Gaps = 9/227 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + +G ++ + E + + D+ ++ Sbjct: 5 ILIVDDDKTIVEFLQIFLIKEGYEVKFSYNGEEALNKIENEKFDLILMDIM--MPKIDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-----AAIY 116 E +IIR + +I ++ + Q + F SG DD + KP E+ R+ + Sbjct: 63 EAIKIIRKLTNTLIIFLTAKDNQQDKIKGFISGCDDYITKPFDLVELSLRMSAILRRSNV 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 R + + + + L +E IL L N+G+ ++++ Sbjct: 123 REFEDDKYIIKIKDLELNLKEHTLYKGKGEITLTPKEFDILCLLARNKGRVFPSSELYER 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222 ++G + +N + +HI LR+KL + + + +GY I+ Sbjct: 183 VWGQ-EFLENDNSLLTHIRNLREKLNDTVKNSKYIKTVWGVGYKIEK 228 >gi|206974047|ref|ZP_03234965.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|206748203|gb|EDZ59592.1| DNA-binding response regulator [Bacillus cereus H3081.97] Length = 231 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 43/230 (18%), Positives = 84/230 (36%), Gaps = 12/230 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD + + ++G ++ + + S+ ++ ++ L Sbjct: 5 ILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQMISTYEIELMILDIM--MPKRNGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARVA 113 E+ + +R ++ VP++ +S + +G DD + KP + E + Sbjct: 63 EVCQEVRENNTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSF 122 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 K + + +V GE L E IL L +N G+ + +I Sbjct: 123 QNATSPKNEDGMIRIRSAEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEI 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222 F ++ D V HIS LR KL G + + +GY I+ Sbjct: 183 FERVWNE-DGYGSNKTVMVHISNLRDKLETGMNGEKFIHTVWGVGYKIEK 231 >gi|311747935|ref|ZP_07721720.1| DNA-binding response regulator [Algoriphagus sp. PR1] gi|126574903|gb|EAZ79261.1| DNA-binding response regulator [Algoriphagus sp. PR1] Length = 222 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 49/218 (22%), Positives = 101/218 (46%), Gaps = 4/218 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + ++ +++ ++ + L S D+ ++ L G + Sbjct: 3 ILVVEDEPGISNFLKQGLEEEAFAVDLADNGKSGLELALSGSYDLLLLDWML--PGISGI 60 Query: 62 ELPRI-IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL R + S P+I ++ ++ T+ SG +D + KP H E+L R+ R K Sbjct: 61 ELTRQFRKQFSDTPIIFLTAKDTVDETIFGLQSGANDYIKKPFHFEELLERIRVQLRAKK 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + GPI + ++ + L ++E +LEYLM N+ K +T+I +++ + Sbjct: 121 GAKEKFTLGPIVLDTERHIVLKNEQEIQLTQKEFALLEYLMRNKNKVCRRTRIIESVWDI 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 V++ I+ LRKKL + D + + R +GY Sbjct: 181 H-FDYNTGVIDVFINSLRKKLDLQKDEDYIQTIRGVGY 217 >gi|117624105|ref|YP_853018.1| transcriptional regulatory protein YedW [Escherichia coli APEC O1] gi|301029610|ref|ZP_07192682.1| transcriptional activator protein Irlr [Escherichia coli MS 196-1] gi|91072760|gb|ABE07641.1| putative 2-component transcriptional regulator yedW [Escherichia coli UTI89] gi|115513229|gb|ABJ01304.1| putative 2-component transcriptional regulator [Escherichia coli APEC O1] gi|294492861|gb|ADE91617.1| heavy metal response regulator [Escherichia coli IHE3034] gi|299877512|gb|EFI85723.1| transcriptional activator protein Irlr [Escherichia coli MS 196-1] gi|307626558|gb|ADN70862.1| transcriptional regulatory protein YedW [Escherichia coli UM146] gi|323952458|gb|EGB48331.1| heavy metal response regulator [Escherichia coli H252] Length = 260 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 50/219 (22%), Positives = 97/219 (44%), Gaps = 3/219 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D ++ + G ++ + +L + ++ L G Sbjct: 40 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIML--PGMDGW 97 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + +R Q P+I ++ S+ + DSG +D + KP E+LARV A R+ Sbjct: 98 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 157 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 N+ E +R+ S + L R+E ++L L + G+ + +T I S I+G+ Sbjct: 158 LNSSLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 216 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + N V+ I +LR K+ + + + R +GYS Sbjct: 217 NFDSDTNTVDVAIRRLRAKVDDPFPEKLISTIRGMGYSF 255 >gi|319795275|ref|YP_004156915.1| two component heavy metal response transcriptional regulator winged helix family [Variovorax paradoxus EPS] gi|315597738|gb|ADU38804.1| two component heavy metal response transcriptional regulator, winged helix family [Variovorax paradoxus EPS] Length = 235 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 46/221 (20%), Positives = 93/221 (42%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D D + G +++ ++ + L + DV ++ L G+ Sbjct: 3 ILIVEDELRTADYLSKGLTEQGCTVDAAHNGIDGQHLALTHDYDVIVLDVML--PGQDGF 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120 + R +RA Q P+I ++ ++ + G DD + KP E+LAR+ A R K Sbjct: 61 AVLRALRAVKQTPVIMLTARDRVEDRIKGLHEGADDYLVKPFSFLELLARLQALNRRGRK 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + +++ R L +E +L L +G+ ++KT I ++ + Sbjct: 121 QEPVQLRIANLQIDLLARKAFRGATRIDLTAKEFALLAVLARRQGEILSKTAIAELVWDM 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + NVVE I +LR K+ + + R +GY ++ Sbjct: 181 -NFDSNTNVVEVAIKRLRDKIDAPFSPKLLHTIRGMGYVME 220 >gi|254427358|ref|ZP_05041065.1| phosphate regulon transcriptional regulatory protein PhoB [Alcanivorax sp. DG881] gi|196193527|gb|EDX88486.1| phosphate regulon transcriptional regulatory protein PhoB [Alcanivorax sp. DG881] Length = 234 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 39/222 (17%), Positives = 88/222 (39%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 +++DD +++ + + + + R D+ ++ L G ++ Sbjct: 6 ILIVDDEPAIREMVAVALELADFDVLEAENAQRGHEIIVDERPDLVLLDWMLPSVTGIEL 65 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118 + ++VP+I ++ + D G DD + KP RE+++R+ A Sbjct: 66 ARRLKRDETTNEVPIIMLTAKSEEDNKIQGLDVGADDYITKPFSTRELISRIKAVLRRAS 125 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + E + + + E R+LE+ M+++ + ++TQ+ ++ Sbjct: 126 SVAAEKAIEVEGLCLDPVSHRISADDYPVDMGPTEYRLLEFFMSHQERAYSRTQLLDQVW 185 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G + VE+ ++ HI +LRK L + + R GY Sbjct: 186 GA-NVYVEDRTIDVHIRRLRKALAPFDYDRFIQTVRGTGYRF 226 >gi|317494844|ref|ZP_07953255.1| response regulator receiver domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917169|gb|EFV38517.1| response regulator receiver domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 238 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 88/228 (38%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + D D+G +E + D ++ L G L Sbjct: 7 ILIVEDDSHIADLLALHLRDEGYQIEHAADGIAGMSMLEQGGWDALILDLML--PGIDGL 64 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-------REILARVA 113 ++ R R+ P+I IS S + + G DD V KP + + R Sbjct: 65 DICRRARSMTRYTPIIMISARSSEVHRVLGLELGADDYVAKPFSMVELAARVKALFRRQE 124 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 A+ R L++ R + + + R + + L RE +L + N K ++ Q+ Sbjct: 125 AMSRNLQMDAGRLDMAGLTIDPIARAVWMNQQPIDLTPREFDLLYFFAKNPDKVFSRLQL 184 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++G + E+ V +HI++LR K+ + + + GY Sbjct: 185 LDQVWG-YQHDGYEHTVNTHINRLRIKIEADPSEPQYILTVWGSGYKF 231 >gi|312898268|ref|ZP_07757659.1| response regulator receiver domain protein [Megasphaera micronuciformis F0359] gi|310620765|gb|EFQ04334.1| response regulator receiver domain protein [Megasphaera micronuciformis F0359] Length = 229 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 48/228 (21%), Positives = 97/228 (42%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D + + DG + + + D+ ++ L G+ Sbjct: 4 ILLIEDDLAIAELERDYLEADGFEITIETDGQKGLESALTENYDLLLVDVML--PGKDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R +R +P++ IS + G DD ++KP E++ARV A R + Sbjct: 62 QIVREVRKKKDIPILMISAKREDIDKIRGLGLGADDYISKPFSPSELVARVKAHSARYER 121 Query: 122 SN--------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + E G + + +G ++G+ L +E +L +L NRG +K + Sbjct: 122 LIAKADKSLASFIEVGSLEIQPEGHRVFIRGKEISLTHKEFELLLFLARNRGIVFSKDAL 181 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 F ++GL D + V H+++LR+KL + + +++ +GY + Sbjct: 182 FERVWGL-DAVGDTATVMVHVNRLREKLEKDPSKPEFIETVWGVGYRL 228 >gi|297159980|gb|ADI09692.1| two component transcriptional regulator, winged helix family protein [Streptomyces bingchenggensis BCW-1] Length = 250 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 50/224 (22%), Positives = 94/224 (41%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ +D +G +++ + + R D+ ++ L Sbjct: 5 ILVAEDDEKQARLIRIYLEREGNAVQTVHDGRSAIDRARTTRPDLIVLDVM--MPQVDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 ++ RI+R SQVP++ ++ + + L D G DD + KP RE+ ARV R Sbjct: 63 DVCRILRTDSQVPILLLTARATEEDMLLGLDLGADDYMTKPYSPRELTARVRALLRRSRA 122 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + G + + + + + GE+ L +E IL L A G+ + QI ++ Sbjct: 123 ITGEPTLIRAGALEIDTACFEVRLAGELIALTGKEFAILALLAAEPGRAFTRAQIIDRVF 182 Query: 179 GLFDEAVEENVVESHISKLRKKLRN--KLGFDPVDSKRFLGYSI 220 G F++ V E V++H+ LR+KL V++ GY + Sbjct: 183 G-FEQNVLERTVDAHVMNLRRKLEQRGPGAPRMVETVYGRGYRL 225 >gi|258543034|ref|YP_003188467.1| two component response regulator [Acetobacter pasteurianus IFO 3283-01] gi|256634112|dbj|BAI00088.1| two component response regulator [Acetobacter pasteurianus IFO 3283-01] gi|256637172|dbj|BAI03141.1| two component response regulator [Acetobacter pasteurianus IFO 3283-03] gi|256640224|dbj|BAI06186.1| two component response regulator [Acetobacter pasteurianus IFO 3283-07] gi|256643281|dbj|BAI09236.1| two component response regulator [Acetobacter pasteurianus IFO 3283-22] gi|256646336|dbj|BAI12284.1| two component response regulator [Acetobacter pasteurianus IFO 3283-26] gi|256649389|dbj|BAI15330.1| two component response regulator [Acetobacter pasteurianus IFO 3283-32] gi|256652375|dbj|BAI18309.1| two component response regulator [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655433|dbj|BAI21360.1| two component response regulator [Acetobacter pasteurianus IFO 3283-12] Length = 225 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 52/222 (23%), Positives = 100/222 (45%), Gaps = 6/222 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L++D V++ + G +E + L +S + DV ++ L G G + L Sbjct: 4 LLVEDDQTVRNFVAKGLAEAGHLVEQAEDGKNGLSLATSEKFDVIILDRMLPG-GVEGLH 62 Query: 63 LPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 + + + ++ P++ +S + + +G DD V KP E+ AR+ R Sbjct: 63 ILQTLRNQNNTTPVLLLSALADVDEKVAGLKAGGDDYVTKPFSFSELQARLEALVRRNRN 122 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 R G + + R+ + G+ L RE R+LE+LM + G+ V +T + ++ Sbjct: 123 EAQPQTRLTIGDLEIDLLSRNVKRAGQKIELQPREFRLLEFLMRHAGQVVTRTMLLEGVW 182 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + NV++ HIS+LR+K+ V + R GY + Sbjct: 183 D-YHFDPQTNVIDVHISRLRQKIDRPFHHPLVHTIRNAGYML 223 >gi|228917667|ref|ZP_04081208.1| Two-component response regulator vanRB [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228923764|ref|ZP_04087042.1| Two-component response regulator vanRB [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228930063|ref|ZP_04093073.1| Two-component response regulator vanRB [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228936917|ref|ZP_04099666.1| Two-component response regulator vanRB [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228942200|ref|ZP_04104740.1| Two-component response regulator vanRB [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228948764|ref|ZP_04111041.1| Two-component response regulator vanRB [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228955296|ref|ZP_04117304.1| Two-component response regulator vanRB [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228961275|ref|ZP_04122894.1| Two-component response regulator vanRB [Bacillus thuringiensis serovar pakistani str. T13001] gi|228975129|ref|ZP_04135688.1| Two-component response regulator vanRB [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981768|ref|ZP_04142063.1| Two-component response regulator vanRB [Bacillus thuringiensis Bt407] gi|228988285|ref|ZP_04148380.1| Two-component response regulator vanRB [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229049720|ref|ZP_04194277.1| Two-component response regulator vanRB [Bacillus cereus AH676] gi|229072518|ref|ZP_04205720.1| Two-component response regulator vanRB [Bacillus cereus F65185] gi|229082277|ref|ZP_04214740.1| Two-component response regulator vanRB [Bacillus cereus Rock4-2] gi|229112476|ref|ZP_04242013.1| Two-component response regulator vanRB [Bacillus cereus Rock1-15] gi|229124573|ref|ZP_04253758.1| Two-component response regulator vanRB [Bacillus cereus 95/8201] gi|229130288|ref|ZP_04259247.1| Two-component response regulator vanRB [Bacillus cereus BDRD-Cer4] gi|229142354|ref|ZP_04270873.1| Two-component response regulator vanRB [Bacillus cereus BDRD-ST26] gi|229147580|ref|ZP_04275925.1| Two-component response regulator vanRB [Bacillus cereus BDRD-ST24] gi|229153223|ref|ZP_04281402.1| Two-component response regulator vanRB [Bacillus cereus m1550] gi|229158637|ref|ZP_04286695.1| Two-component response regulator vanRB [Bacillus cereus ATCC 4342] gi|229181325|ref|ZP_04308655.1| Two-component response regulator vanRB [Bacillus cereus 172560W] gi|229187280|ref|ZP_04314425.1| Two-component response regulator vanRB [Bacillus cereus BGSC 6E1] gi|229193313|ref|ZP_04320263.1| Two-component response regulator vanRB [Bacillus cereus ATCC 10876] gi|229199181|ref|ZP_04325862.1| Two-component response regulator vanRB [Bacillus cereus m1293] gi|228584287|gb|EEK42424.1| Two-component response regulator vanRB [Bacillus cereus m1293] gi|228590114|gb|EEK47983.1| Two-component response regulator vanRB [Bacillus cereus ATCC 10876] gi|228596290|gb|EEK53965.1| Two-component response regulator vanRB [Bacillus cereus BGSC 6E1] gi|228602218|gb|EEK59709.1| Two-component response regulator vanRB [Bacillus cereus 172560W] gi|228624621|gb|EEK81390.1| Two-component response regulator vanRB [Bacillus cereus ATCC 4342] gi|228630322|gb|EEK86972.1| Two-component response regulator vanRB [Bacillus cereus m1550] gi|228635870|gb|EEK92355.1| Two-component response regulator vanRB [Bacillus cereus BDRD-ST24] gi|228641124|gb|EEK97436.1| Two-component response regulator vanRB [Bacillus cereus BDRD-ST26] gi|228653221|gb|EEL09100.1| Two-component response regulator vanRB [Bacillus cereus BDRD-Cer4] gi|228658913|gb|EEL14568.1| Two-component response regulator vanRB [Bacillus cereus 95/8201] gi|228670856|gb|EEL26163.1| Two-component response regulator vanRB [Bacillus cereus Rock1-15] gi|228700709|gb|EEL53232.1| Two-component response regulator vanRB [Bacillus cereus Rock4-2] gi|228710494|gb|EEL62467.1| Two-component response regulator vanRB [Bacillus cereus F65185] gi|228722633|gb|EEL74021.1| Two-component response regulator vanRB [Bacillus cereus AH676] gi|228771457|gb|EEM19928.1| Two-component response regulator vanRB [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228777880|gb|EEM26152.1| Two-component response regulator vanRB [Bacillus thuringiensis Bt407] gi|228784650|gb|EEM32670.1| Two-component response regulator vanRB [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228798396|gb|EEM45390.1| Two-component response regulator vanRB [Bacillus thuringiensis serovar pakistani str. T13001] gi|228804429|gb|EEM51040.1| Two-component response regulator vanRB [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228810896|gb|EEM57240.1| Two-component response regulator vanRB [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228817534|gb|EEM63619.1| Two-component response regulator vanRB [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228822746|gb|EEM68629.1| Two-component response regulator vanRB [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228829562|gb|EEM75189.1| Two-component response regulator vanRB [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228835893|gb|EEM81256.1| Two-component response regulator vanRB [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228841904|gb|EEM87010.1| Two-component response regulator vanRB [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 216 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 44/221 (19%), Positives = 97/221 (43%), Gaps = 11/221 (4%) Query: 5 IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64 I+D +++ +++ + L D+ ++ L + Sbjct: 2 IEDNPDIQELIREFLMAQNFTVDVVGAGTEGILLFQKNSYDLVLLDVML--PDIDGYSIC 59 Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYRRLK 120 +I+R S VP+I ++ + ++ + F+ G+DD + KP H+ + RV + Sbjct: 60 KIMRGQSDVPIIMLTGLHNEESEIKGFELGIDDYITKPFHYTVFIKRVEAVLRRAATKEA 119 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + + + S V G L +E I+ L+ NRGK ++++ + + ++G Sbjct: 120 EAATILQFHELMLNSTAYAAYVHGNQIELTTKEFEIIYTLLQNRGKVLSRSDLLNKVWG- 178 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ + V+++HI LRKKL G + + + +GY I+ Sbjct: 179 YEHYGDVRVIDTHIKNLRKKL----GIPYIKTVKGIGYKIE 215 >gi|226954429|ref|ZP_03824893.1| OmpR family transcriptional regulator [Acinetobacter sp. ATCC 27244] gi|294651444|ref|ZP_06728758.1| OmpR family transcriptional regulator [Acinetobacter haemolyticus ATCC 19194] gi|226834778|gb|EEH67161.1| OmpR family transcriptional regulator [Acinetobacter sp. ATCC 27244] gi|292822690|gb|EFF81579.1| OmpR family transcriptional regulator [Acinetobacter haemolyticus ATCC 19194] Length = 230 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 43/225 (19%), Positives = 91/225 (40%), Gaps = 7/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + G + F+ + + + ++ + L Sbjct: 7 IMLVEDEVELAQLVRDYLEAAGFEVSMFHDGQDAYTQFQQRKPSLMILDLMV--PRMDGL 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R +R S +P+I ++ + + G DD + KP +E++ARV A+ RRL+ Sbjct: 65 TICRKVREQSDLPIIMVTARTEEIDRVLGLNMGADDYICKPFSPKELVARVQAVLRRLER 124 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + R+ + Q + L E R+LE + + G+ ++ Q+ I Sbjct: 125 KAEPEQNDLFRIDKAQQRIWYQQKALTLTPTEFRLLELFLEHLGQVYSRAQLLDHI-NPD 183 Query: 182 DEAVEENVVESHISKLRKKLRNKLG----FDPVDSKRFLGYSIDW 222 V + V++SHI LR+K+ + + + +GY ++ Sbjct: 184 SFDVADRVIDSHIKNLRRKISEAADTGNRHEWIQAVYGVGYRFEY 228 >gi|89096579|ref|ZP_01169471.1| two-component response regulator [Bacillus sp. NRRL B-14911] gi|89088594|gb|EAR67703.1| two-component response regulator [Bacillus sp. NRRL B-14911] Length = 228 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 48/227 (21%), Positives = 94/227 (41%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ ++G+ + D+ ++ + Sbjct: 5 ILIVDDDKEIRHLISVYLENEGLKTSQAENALEALGKLEEQAFDLIILDIM--MPEMDGI 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E IR +P+I +S + SG DD ++KP + E++ARV + RR K Sbjct: 63 EACMKIREEQHMPIIMLSAKSEDMDKIQGLTSGADDYISKPFNPLELIARVKSHLRRYKK 122 Query: 122 SNNRAETGPI-------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N +E + +D R G+ L +E ILE L N+G ++ ++I+ Sbjct: 123 YNTESEADKNVIVIGSLEINTDTRLVYAGGKEIRLTPKEFDILELLARNKGIVMSVSKIY 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220 +++ D +N V HI+K+R+K+ + + + +GY I Sbjct: 183 ESVW-KEDLLKSDNTVMVHITKIREKIEEDPKHPIYIKTIWGVGYKI 228 >gi|330875500|gb|EGH09649.1| DNA-binding response regulator BaeS [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 226 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 45/221 (20%), Positives = 85/221 (38%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + G S + ++ + ++ L G + Sbjct: 9 ILIVEDEPKLATLMRDYLIAAGYSTHCLANGLDVVPAVRASAPQLILLDIML--PGRDGM 66 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + +R+ S VP+I I+ L D G DD + KP RE + R Sbjct: 67 DICKELRSFSAVPIIMITARVEEIDRLLGLDLGADDYICKPFSPRE-MVARVKAILRRTS 125 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + ++V + G V L E R+L + G+ ++ Q+ +Y Sbjct: 126 ATDPLAAKGLQVDEEHYQASFNGVVLDLTPVELRLLATFARSPGRVFSRDQLLDRLYSDH 185 Query: 182 DEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221 V + V+SHI LR+KL G D + S +GY ++ Sbjct: 186 -RVVTDRTVDSHIRNLRRKLEQACPGQDQIQSLYGVGYKLE 225 >gi|325685239|gb|EGD27357.1| DNA-binding response regulator [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 242 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 45/233 (19%), Positives = 93/233 (39%), Gaps = 19/233 (8%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G +E E D+ ++ L + L Sbjct: 5 ILVVDDEKPISDIIKFNLTKEGFDVETAYDGEEAVEKVEEYNPDLMILDLML--PKKDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-------- 113 E+ R +R +P+I ++ + + G DD V KP +RE++ARV Sbjct: 63 EVAREVRQTHDMPIIMVTAKGGEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRSRDI 122 Query: 114 -------AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166 + + +N + G + + D E GE L RE +L Y+ + + Sbjct: 123 VKKAVEVNQQKEKEQESNDIQIGNLLIKPDAYLVEKNGEKIELTHREFELLYYMAQHMDQ 182 Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGY 218 + + + ++G +D + V+ + +LR+K+ + + ++R +GY Sbjct: 183 VMTREHLLQTVWG-YDYFGDVRTVDVTVHRLREKIEDNPVRPKILVTRRGVGY 234 >gi|320333134|ref|YP_004169845.1| winged helix family two component transcriptional regulator [Deinococcus maricopensis DSM 21211] gi|319754423|gb|ADV66180.1| two component transcriptional regulator, winged helix family [Deinococcus maricopensis DSM 21211] Length = 222 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 44/219 (20%), Positives = 87/219 (39%), Gaps = 4/219 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D + G + D+ ++ L Sbjct: 5 ILLIEDNPDITRVVQYELEQSGYRVLSAPDGITGLTSARENNPDLVILDLGL--PDFDGA 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R S VP+I ++ ++ ++ ++G DD + KP H E++ARV R + Sbjct: 63 EIARRLRKTSAVPIIILTAMDAVDRKVNLLEAGADDYMTKPFHPEELVARVKVQLRHQQH 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 R G L +E +L +L G+ ++ +I ++ Sbjct: 123 GEVIQIGALEIH-PQKRLCHYNGHEVRLSPKEFDLLTFLARQPGRVYSRQEIEREVW-NG 180 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + NVV+ H++ +R KLR+ G+ + + R +GY++ Sbjct: 181 ELPSNSNVVDVHMANMRAKLRDLDGYGIIRTVRGIGYAL 219 >gi|307138638|ref|ZP_07497994.1| transcriptional regulatory protein YedW [Escherichia coli H736] gi|331642590|ref|ZP_08343725.1| transcriptional activator protein CopR [Escherichia coli H736] gi|331039388|gb|EGI11608.1| transcriptional activator protein CopR [Escherichia coli H736] Length = 260 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 50/219 (22%), Positives = 96/219 (43%), Gaps = 3/219 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D ++ + G ++ +L + ++ L G Sbjct: 40 ILLIEDNQRTQEWVTQGLSEAGYVIDAVTDGRDGLYLALKDDYALIILDIML--PGMDGW 97 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + +R Q P+I ++ S+ + DSG +D + KP E+LARV A R+ Sbjct: 98 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 157 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 N+ E +R+ S + L R+E ++L L + G+ + +T I S I+G+ Sbjct: 158 LNSTLEISGLRMDSVSQSVSRDNINITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 216 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + N V+ I +LR K+ + + + R +GYS Sbjct: 217 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 255 >gi|302558338|ref|ZP_07310680.1| DNA-binding response regulator TcrA [Streptomyces griseoflavus Tu4000] gi|302475956|gb|EFL39049.1| DNA-binding response regulator TcrA [Streptomyces griseoflavus Tu4000] Length = 220 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 45/222 (20%), Positives = 96/222 (43%), Gaps = 9/222 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G +++ + + D+ ++ L G Sbjct: 3 LLIVEDEKRLALSLAKGLTAEGYAVDVVHDGREGLHRATEGTYDLLILDIML--PGLNGY 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119 + +RA P++ ++ + D+G DD + KP + ++AR+ A + RR Sbjct: 61 RVCAALRAAGHDVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARIKALLRRRP 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++ G ++V + R + + L +E +LE+L+ G+ V+K I ++ Sbjct: 121 AGASPVHVHGDLKVDTAARRVFLGEDEVALTAKEFSVLEHLVLRAGEVVSKADILEHVWD 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 F + N+VE +IS LR+KLR + + R GY ++ Sbjct: 181 -FAYEGDPNIVEVYISALRRKLRA----RLIRTVRGAGYRLE 217 >gi|228914815|ref|ZP_04078424.1| Uncharacterized sensory transduction protein ykoG [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228845134|gb|EEM90176.1| Uncharacterized sensory transduction protein ykoG [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 227 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 44/224 (19%), Positives = 92/224 (41%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G E + + D+ ++ L L Sbjct: 5 ILIVEDEEKIARVVQLELEFEGYESEIAKTGTEAMEKFGNGNWDLILLDVML--PNISGL 62 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIY 116 E+ R IR ++ +P+I ++ S+ + D G D + KP I A + Sbjct: 63 EVLRRIRLKNAVIPIILLTARDSVVDKVSGLDQGASDYITKPFQIEELLARIRACLRISN 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + N+ + + + R+ + + L RE +L +LM + + + + QI + Sbjct: 123 VVKEEQNSSYQIADLYLDEKTREVKRGNSLIDLTPREFDLLLFLMKHENQVLNREQIVTN 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G FD + NVV+ +I LRKK+ + + + R +GY + Sbjct: 183 VWG-FDYYGDTNVVDVYIRYLRKKVDCNVDVPLIHTVRGVGYVL 225 >gi|229012119|ref|ZP_04169298.1| Two component transcriptional regulator, winged helix [Bacillus mycoides DSM 2048] gi|229167311|ref|ZP_04295049.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH621] gi|228615873|gb|EEK72960.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH621] gi|228749207|gb|EEL99053.1| Two component transcriptional regulator, winged helix [Bacillus mycoides DSM 2048] Length = 224 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 39/220 (17%), Positives = 97/220 (44%), Gaps = 11/220 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++ DD + A F +G + E + + D++ ++ + + Sbjct: 13 LIADDEQDMLKILKAYFEKEGFEVLLAKDGEEALQIFYDEKIDLAILDWMMPKS--SGIT 70 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + I+ +S V ++ ++ + L SG D+ V KP H ++ R ++L Sbjct: 71 VCQEIKKNSSVKVLMLTAKSESEDELAALQSGADEYVKKPFHPGVLITRA----KKLVQH 126 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 + + +++ + + + E ++++ + ++G + + ++ ++G FD Sbjct: 127 EDVIQVQDLKIDFTKNKVYKNEKELDITKTELQLIKCFLNHKGTILTRKKLLDIVWG-FD 185 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 EE V++H+ +LRKK+ G + + + R LGYS++ Sbjct: 186 YFGEERTVDTHVRRLRKKI----GGNIIKTHRGLGYSLEE 221 >gi|209546661|ref|YP_002278579.1| two component winged helix family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537905|gb|ACI57839.1| two component transcriptional regulator, winged helix family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 234 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 45/225 (20%), Positives = 84/225 (37%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++D G+ + + D+ ++ L Sbjct: 5 ILVVDDEPHIRDVICFALERAGLISTAVRNGTEAMAAFRRGKIDLIILDIG--MPDMDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R IR S +P++ +S + + G DD V KP RE++ARV AI +R Sbjct: 63 DVCRQIRKTSGLPILFLSARDEEIDKVLGLEIGGDDYVTKPFSPRELVARVKAILKRSGN 122 Query: 122 SNNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 I V GR + E IL+ L++ ++ ++ Sbjct: 123 EAEPERRRAIFVAGELSLDRQGRTVMFGDSAISMTVLEFAILDALLSRPDMVFSRERLME 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 A YG V + ++SHI +R K G + + +G+ + Sbjct: 183 AAYGAGTY-VADRTIDSHIRNIRAKFLAAGGQGIIATVHGIGFKL 226 >gi|315618142|gb|EFU98733.1| transcriptional regulatory protein baeR [Escherichia coli 3431] Length = 240 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 43/224 (19%), Positives = 88/224 (39%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + I + + + D+ ++ L G L Sbjct: 13 ILIVEDEPKLGQLLIDYLRAASYAPTLISHGDQVLPYVRQTPPDLILLDLML--PGTDGL 70 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 L R IR S +P++ ++ L + G DD + KP RE++ARV + Sbjct: 71 TLCREIRRFSDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCKP 130 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + P+ + +G++ L E R+L+ L GK ++ + + +Y Sbjct: 131 QRELQQQDAESPLIIDEGRFQASWRGKMLDLTPAEFRLLKTLSHEPGKVFSREHLLNHLY 190 Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + V + ++SHI LR+KL + + + +GY + Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLESLDAEQSFIRAVYSVGYRWE 233 >gi|288555025|ref|YP_003426960.1| winged helix family two component transcriptional regulator [Bacillus pseudofirmus OF4] gi|288546185|gb|ADC50068.1| two component transcriptional regulator, winged helix family protein [Bacillus pseudofirmus OF4] Length = 233 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 39/222 (17%), Positives = 77/222 (34%), Gaps = 7/222 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++I+D + + G + E D ++ L E Sbjct: 9 LIIEDDPHIAELIQLYMEKLGYLTQVAYDGEAGLESYYETYPDFIFLDIML--PKIDGWE 66 Query: 63 LPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118 L + I + ++P+I ++ Q + D G DD V KP E + V Sbjct: 67 LCQEIRWDNKKIPIIMLTGKGESQDKIKGLDIGADDYVVKPFDPNELVARMKAVMRRADL 126 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 L + + V + +P +E +L YL + + + Q+ I+ Sbjct: 127 LNDEDQVVSLLGLVVDKKEYKAAAGDKEITMPPKELDLLYYLASYPNQVFTRQQLLDQIW 186 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G + + ++ HI ++R+KL + + R +GY Sbjct: 187 G-YAFEGDPRTIDVHIKRIREKLTEADAKWTIKTIRGVGYKF 227 >gi|295688435|ref|YP_003592128.1| winged helix family two component transcriptional regulator [Caulobacter segnis ATCC 21756] gi|295430338|gb|ADG09510.1| two component transcriptional regulator, winged helix family [Caulobacter segnis ATCC 21756] Length = 225 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 53/221 (23%), Positives = 100/221 (45%), Gaps = 9/221 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + D G +++ E ++L + D ++ L + Sbjct: 3 ILLVEDDPDLTRQLKLALADAGYAVDHAPDGEEAQFLGETEPYDAVILDLGL--PKVDGV 60 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R + P++ ++ + + FD+G DD + KP H E+LAR+ A+ RR Sbjct: 61 SVLERWRRGNIATPVLILTARGAWSDKVAGFDAGADDYLAKPFHTEELLARLRALLRRSA 120 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + G +R+ V GE L E R+L Y+M ++G+ + +T++ +Y Sbjct: 121 GHAAPSLSCGALRLDPRAARASVNGEPLRLTSLEYRLLHYMMMHQGRVIGRTELVEHLYD 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D + N +E I +LRKKL G + +++ R LGY + Sbjct: 181 Q-DFDRDSNTIEVFIGRLRKKL----GAERIETVRGLGYRL 216 >gi|170680782|ref|YP_001743277.1| transcriptional regulatory protein YedW [Escherichia coli SMS-3-5] gi|194433665|ref|ZP_03065941.1| heavy metal response regulator [Shigella dysenteriae 1012] gi|293405449|ref|ZP_06649441.1| two-component system response regulator YedW [Escherichia coli FVEC1412] gi|301018162|ref|ZP_07182681.1| transcriptional activator protein Irlr [Escherichia coli MS 69-1] gi|331673476|ref|ZP_08374244.1| transcriptional activator protein CopR [Escherichia coli TA280] gi|332278865|ref|ZP_08391278.1| transcriptional regulatory protein YedW [Shigella sp. D9] gi|170518500|gb|ACB16678.1| heavy metal response regulator [Escherichia coli SMS-3-5] gi|194418094|gb|EDX34187.1| heavy metal response regulator [Shigella dysenteriae 1012] gi|291427657|gb|EFF00684.1| two-component system response regulator YedW [Escherichia coli FVEC1412] gi|300399854|gb|EFJ83392.1| transcriptional activator protein Irlr [Escherichia coli MS 69-1] gi|320180635|gb|EFW55563.1| Putative two-component system response regulator YedW [Shigella boydii ATCC 9905] gi|324119015|gb|EGC12904.1| heavy metal response regulator [Escherichia coli E1167] gi|331069674|gb|EGI41061.1| transcriptional activator protein CopR [Escherichia coli TA280] gi|332101217|gb|EGJ04563.1| transcriptional regulatory protein YedW [Shigella sp. D9] Length = 260 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 50/219 (22%), Positives = 97/219 (44%), Gaps = 3/219 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D ++ + G ++ + +L + ++ L G Sbjct: 40 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIML--PGMDGW 97 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + +R Q P+I ++ S+ + DSG +D + KP E+LARV A R+ Sbjct: 98 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 157 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 N+ E +R+ S + L R+E ++L L + G+ + +T I S I+G+ Sbjct: 158 LNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 216 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + N V+ I +LR K+ + + + R +GYS Sbjct: 217 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 255 >gi|157155786|ref|YP_001463269.1| transcriptional regulatory protein YedW [Escherichia coli E24377A] gi|157161437|ref|YP_001458755.1| transcriptional regulatory protein YedW [Escherichia coli HS] gi|170019701|ref|YP_001724655.1| transcriptional regulatory protein YedW [Escherichia coli ATCC 8739] gi|191169243|ref|ZP_03030996.1| heavy metal response regulator [Escherichia coli B7A] gi|194430371|ref|ZP_03062859.1| heavy metal response regulator [Escherichia coli B171] gi|297516682|ref|ZP_06935068.1| transcriptional regulatory protein YedW [Escherichia coli OP50] gi|300920190|ref|ZP_07136638.1| transcriptional activator protein Irlr [Escherichia coli MS 115-1] gi|300951603|ref|ZP_07165432.1| transcriptional activator protein Irlr [Escherichia coli MS 116-1] gi|300956508|ref|ZP_07168794.1| transcriptional activator protein Irlr [Escherichia coli MS 175-1] gi|301327760|ref|ZP_07220962.1| transcriptional activator protein Irlr [Escherichia coli MS 78-1] gi|301644571|ref|ZP_07244563.1| transcriptional activator protein Irlr [Escherichia coli MS 146-1] gi|307312448|ref|ZP_07592082.1| two component transcriptional regulator, winged helix family [Escherichia coli W] gi|331668658|ref|ZP_08369506.1| transcriptional activator protein CopR [Escherichia coli TA271] gi|157067117|gb|ABV06372.1| heavy metal response regulator [Escherichia coli HS] gi|157077816|gb|ABV17524.1| heavy metal response regulator [Escherichia coli E24377A] gi|169754629|gb|ACA77328.1| two component heavy metal response transcriptional regulator, winged helix family [Escherichia coli ATCC 8739] gi|190900721|gb|EDV60517.1| heavy metal response regulator [Escherichia coli B7A] gi|194411591|gb|EDX27925.1| heavy metal response regulator [Escherichia coli B171] gi|300316692|gb|EFJ66476.1| transcriptional activator protein Irlr [Escherichia coli MS 175-1] gi|300412786|gb|EFJ96096.1| transcriptional activator protein Irlr [Escherichia coli MS 115-1] gi|300449146|gb|EFK12766.1| transcriptional activator protein Irlr [Escherichia coli MS 116-1] gi|300845693|gb|EFK73453.1| transcriptional activator protein Irlr [Escherichia coli MS 78-1] gi|301077107|gb|EFK91913.1| transcriptional activator protein Irlr [Escherichia coli MS 146-1] gi|306907619|gb|EFN38122.1| two component transcriptional regulator, winged helix family [Escherichia coli W] gi|315061264|gb|ADT75591.1| predicted DNA-binding response regulator in two-component system with YedV [Escherichia coli W] gi|320174282|gb|EFW49439.1| putative two-component system response regulator YedW [Shigella dysenteriae CDC 74-1112] gi|320185520|gb|EFW60287.1| Putative two-component system response regulator YedW [Shigella flexneri CDC 796-83] gi|323378157|gb|ADX50425.1| two component heavy metal response transcriptional regulator, winged helix family [Escherichia coli KO11] gi|323940374|gb|EGB36565.1| heavy metal response regulator [Escherichia coli E482] gi|331063852|gb|EGI35763.1| transcriptional activator protein CopR [Escherichia coli TA271] Length = 260 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 50/219 (22%), Positives = 97/219 (44%), Gaps = 3/219 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D ++ + G ++ + +L + ++ L G Sbjct: 40 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIML--PGMDGW 97 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + +R Q P+I ++ S+ + DSG +D + KP E+LARV A R+ Sbjct: 98 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 157 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 N+ E +R+ S + L R+E ++L L + G+ + +T I S I+G+ Sbjct: 158 LNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 216 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + N V+ I +LR K+ + + + R +GYS Sbjct: 217 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 255 >gi|309795924|ref|ZP_07690337.1| transcriptional activator protein Irlr [Escherichia coli MS 145-7] gi|308120374|gb|EFO57636.1| transcriptional activator protein Irlr [Escherichia coli MS 145-7] gi|320198658|gb|EFW73258.1| Putative two-component system response regulator YedW [Escherichia coli EC4100B] Length = 260 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 50/219 (22%), Positives = 97/219 (44%), Gaps = 3/219 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D ++ + G ++ + +L + ++ L G Sbjct: 40 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIML--PGMDGW 97 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + +R Q P+I ++ S+ + DSG +D + KP E+LARV A R+ Sbjct: 98 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 157 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 N+ E +R+ S + L R+E ++L L + G+ + +T I S I+G+ Sbjct: 158 LNSSLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 216 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + N V+ I +LR K+ + + + R +GYS Sbjct: 217 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 255 >gi|229062506|ref|ZP_04199819.1| Two-component response regulator [Bacillus cereus AH603] gi|228716789|gb|EEL68480.1| Two-component response regulator [Bacillus cereus AH603] Length = 229 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 52/229 (22%), Positives = 90/229 (39%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++++ F + + + + D+ ++ L Sbjct: 5 ILIVEDEDILREILKDYFLSEQYIVFEARDGKEALVVFEEEEVDLVILDIML--PELDGW 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR-------EILARVAA 114 + R IR S+VP+I ++ TL F+ G DD V KP +L A Sbjct: 63 SVCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKA 122 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + L+ ++ I V R V L E IL Y M N+G + + Q+ Sbjct: 123 SKKPLENEDDTLSIHGIHVHFPSRTVTVDEADISLTHTEFEILVYFMKNQGIVLTREQLI 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 S I+G ++ A ++ V SHI LR KL K + + GY + N Sbjct: 183 SRIWG-YEFAGDDRTVNSHIRNLRNKLGEK--AKCITTVVRTGYKFEGN 228 >gi|329947016|ref|ZP_08294428.1| transcriptional activator protein CopR [Actinomyces sp. oral taxon 170 str. F0386] gi|328526827|gb|EGF53840.1| transcriptional activator protein CopR [Actinomyces sp. oral taxon 170 str. F0386] Length = 219 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 48/222 (21%), Positives = 89/222 (40%), Gaps = 10/222 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G + + L D+ ++ L Sbjct: 4 ILIVEDESRIVAFLTKGLKAAGFTTHTTAAGREAVELALQTSFDLIILDVGL--PDIDGF 61 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118 E+ + +R P+I ++ S+ + + G DD + KP E+ RV Sbjct: 62 EVLQQLRGQGVAAPVIMLTARSSVADRVAGLEGGADDYMPKPFSFEELLARIRVRLRPEA 121 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 R + + R ++G L RE + E M + G+ +++ Q+ SA++ Sbjct: 122 AGADQMRLTHRDMVLDLRTRTLTLEGRTVELSAREFALAEAFMRHPGQVLSREQLLSAVW 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 GL D NVVE ++S LR KL G D V++ R +GY + Sbjct: 182 GL-DFDPGSNVVEVYVSYLRNKL----GRDRVETVRGMGYRL 218 >gi|323968255|gb|EGB63663.1| heavy metal response regulator [Escherichia coli M863] gi|323977850|gb|EGB72936.1| heavy metal response regulator [Escherichia coli TW10509] Length = 260 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 50/219 (22%), Positives = 97/219 (44%), Gaps = 3/219 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D ++ + G ++ + +L + ++ L G Sbjct: 40 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIML--PGMDGW 97 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + +R Q P+I ++ S+ + DSG +D + KP E+LARV A R+ Sbjct: 98 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 157 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 N+ E +R+ S + L R+E ++L L + G+ + +T I S I+G+ Sbjct: 158 LNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 216 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + N V+ I +LR K+ + + + R +GYS Sbjct: 217 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 255 >gi|300311799|ref|YP_003775891.1| two component heavy metal response transcription regulator protein [Herbaspirillum seropedicae SmR1] gi|300074584|gb|ADJ63983.1| two component heavy metal response transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 230 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 44/221 (19%), Positives = 92/221 (41%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + + G +++ + + L DV ++ L G Sbjct: 3 ILIVEDEQKMSEYLCKGLTEQGCAVDLAANGVDGQHLAIEHDYDVIVLDVML--PGLDGF 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120 + R +R + P+I ++ S++ + G DD + KP E+LAR+ A R Sbjct: 61 SVLRALRKVKETPVIMLTARDSVEDRIKGLHDGADDYLIKPFSFLELLARLQALTRRGRA 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + G +++ R G L +E +L + +G+ ++KT I ++ + Sbjct: 121 QEPAQLRIGDLQIDLLSRKAFRGGLRIDLTAKEFALLAVMARRQGEILSKTAIAELVWDM 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + NVVE I +LR K+ + + R +GY ++ Sbjct: 181 -NFDSNTNVVEVAIKRLRAKIDAPFEQKLLHTVRGMGYVLE 220 >gi|269838215|ref|YP_003320443.1| two component transcriptional regulator, winged helix family [Sphaerobacter thermophilus DSM 20745] gi|269787478|gb|ACZ39621.1| two component transcriptional regulator, winged helix family [Sphaerobacter thermophilus DSM 20745] Length = 236 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 43/230 (18%), Positives = 84/230 (36%), Gaps = 17/230 (7%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + G + L + + D+ ++ L L Sbjct: 4 ILLVEDARDLAQVIERELTAAGYRVVLAYDGRTALDLLAREQPDLVVLDWML--PQVDGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----------REILA 110 E+ R +R S P++ ++ + + G DD + KP R Sbjct: 62 EVLRRLRQESPTPVLMLTARSEEVDRVVGLELGADDYLTKPFSMRELLARVRALLRRTDL 121 Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + K S GP+ + + G+ L E R+L LM + G+ + Sbjct: 122 VRQMLEADRKASTEAVRYGPLALDPVRHIATLDGQELDLTPTEFRLLHLLMRHPGRAFGR 181 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + I+G D+ V E V++ + +LRKKL +++ +GY + Sbjct: 182 SYLLDTIWG--DQFVGERSVDNAVLRLRKKLGPLGEA--IETVWGVGYRL 227 >gi|229060336|ref|ZP_04197702.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus AH603] gi|228718926|gb|EEL70543.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus AH603] Length = 224 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 49/223 (21%), Positives = 93/223 (41%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + D +G ++ D+ ++ L G L Sbjct: 4 ILIIEDEESLADFLELELKYEGYIVDIQLDGRKGLEAALENSYDLILLDLML--PGLNGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +RA P+I ++ S+ + DSG DD + KP E+LAR+ I+RR + Sbjct: 62 EVCRRLRATKSTPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARMRVIFRREEN 121 Query: 122 SNNRAETGPIRVF----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + + + R E L +E +L M N + + + + + Sbjct: 122 TEQKHASFLSFKDLQLQIESRTITKGNEEIELTNKEFELLLMFMKNINRVLTRDILLDQV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G +D VE N+V+ ++ LR KL + + + + R GY + Sbjct: 182 WG-YDAMVETNIVDVYVRYLRNKLHSVDKEEYIQTVRGAGYIM 223 >gi|254518068|ref|ZP_05130124.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA] gi|226911817|gb|EEH97018.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA] Length = 237 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 46/234 (19%), Positives = 87/234 (37%), Gaps = 17/234 (7%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++D +G + E + SS D+ ++ + Sbjct: 6 ILIVDDEKEIRDLIDIYLKGEGYDTIKAENGEEALNILSSNDVDLIILDIM--MPKVNGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-------------REI 108 E IR ++P+I +S + ++G DD + KP + + Sbjct: 64 EACLKIREEREMPIIMLSAKSEDMDKILGLNTGADDYLTKPFNPLELVARVRSQLRRYKR 123 Query: 109 LARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 A + +N E I + + + GE L E IL L NRGK Sbjct: 124 FNNTLAKEELVVKQDNVLEIDEISINLETHEVFKDGEEIKLTPTEFDILVLLGENRGKVF 183 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 + I+++++ + +N V HI K+R+K+ + + +GY ID Sbjct: 184 SIENIYNSVW-KQEFMQSDNTVMVHIRKVREKIEEDPRKPKFIKTVWGVGYKID 236 >gi|197106157|ref|YP_002131534.1| response regulator(with CheY-like receiver domain and winged-helix DNA-binding domain) [Phenylobacterium zucineum HLK1] gi|196479577|gb|ACG79105.1| response regulator(with CheY-like receiver domain and winged-helix DNA-binding domain) [Phenylobacterium zucineum HLK1] Length = 230 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 54/221 (24%), Positives = 102/221 (46%), Gaps = 9/221 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + D G +++ E ++L + D ++ L + Sbjct: 3 ILLVEDDPDLSRQLKLALTDAGYAVDHAPDGEEAQFLGETEPYDAIILDLGL--PKVDGV 60 Query: 62 ELP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R R + P++ ++ + + FD+G DD + KP H E+LAR+ A+ RR Sbjct: 61 SVLERWRRENMATPVLILTARGAWSEKVAGFDAGADDYLTKPFHTEELLARLRALLRRSA 120 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + G +R+ V GE L E R+L YLM ++G+ +++T++ +Y Sbjct: 121 GHATPNLSCGGLRLDPRAARASVNGEPLRLTSLEYRLLHYLMMHQGRVISRTELVEHLYD 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D + N +E I ++RKK+ G D +++ R LGY + Sbjct: 181 Q-DFDRDSNTIEVFIGRVRKKI----GADRIETVRGLGYRL 216 >gi|119487882|ref|ZP_01621379.1| Two component Transcriptional regulator, Winged helix family protein [Lyngbya sp. PCC 8106] gi|119455458|gb|EAW36596.1| Two component Transcriptional regulator, Winged helix family protein [Lyngbya sp. PCC 8106] Length = 222 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 41/224 (18%), Positives = 92/224 (41%), Gaps = 12/224 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ +D + +G ++ N ++ D+ ++ L + Sbjct: 4 ILIAEDEPRIAAFLEKGLKANGFTITVANDGLDALQKALGSQFDLLILDLNL--PHQDGF 61 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH----REILARVAAIY 116 ++ + +R +VP+I ++ ++ + + G DD V KP + AR+ Sbjct: 62 QILKQLRGQGEKVPIIILTARDDIEDKVAGLEEGADDYVTKPFRFAELLARVRARLRHQT 121 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 G I + R +V L +E ++LE LM + + +++ Q+ Sbjct: 122 LSPVKEERVLTAGDILLDLYTRQAQVADCPIKLSAKEFQLLETLMRHPEQVMSREQLLDR 181 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G +D N+V+ ++ LRKKL G + +++ R +GY + Sbjct: 182 VWG-YDYDPGSNIVDVYVGYLRKKL----GGNRIETVRGMGYRL 220 >gi|30021702|ref|NP_833333.1| two-component response regulator [Bacillus cereus ATCC 14579] gi|75760689|ref|ZP_00740714.1| Two-component response regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|206969120|ref|ZP_03230075.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|218235232|ref|YP_002368413.1| DNA-binding response regulator [Bacillus cereus B4264] gi|218898694|ref|YP_002447105.1| DNA-binding response regulator [Bacillus cereus G9842] gi|228902100|ref|ZP_04066264.1| Two-component response regulator [Bacillus thuringiensis IBL 4222] gi|228922307|ref|ZP_04085614.1| Two-component response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228940685|ref|ZP_04103248.1| Two-component response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228953868|ref|ZP_04115907.1| Two-component response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228959784|ref|ZP_04121459.1| Two-component response regulator [Bacillus thuringiensis serovar pakistani str. T13001] gi|228966495|ref|ZP_04127548.1| Two-component response regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|228973603|ref|ZP_04134185.1| Two-component response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228980161|ref|ZP_04140475.1| Two-component response regulator [Bacillus thuringiensis Bt407] gi|229047283|ref|ZP_04192882.1| Two-component response regulator [Bacillus cereus AH676] gi|229071099|ref|ZP_04204325.1| Two-component response regulator [Bacillus cereus F65185] gi|229075494|ref|ZP_04208483.1| Two-component response regulator [Bacillus cereus Rock4-18] gi|229080805|ref|ZP_04213323.1| Two-component response regulator [Bacillus cereus Rock4-2] gi|229098043|ref|ZP_04228993.1| Two-component response regulator [Bacillus cereus Rock3-29] gi|229104130|ref|ZP_04234804.1| Two-component response regulator [Bacillus cereus Rock3-28] gi|229111024|ref|ZP_04240583.1| Two-component response regulator [Bacillus cereus Rock1-15] gi|229117061|ref|ZP_04246443.1| Two-component response regulator [Bacillus cereus Rock1-3] gi|229128872|ref|ZP_04257848.1| Two-component response regulator [Bacillus cereus BDRD-Cer4] gi|229146167|ref|ZP_04274542.1| Two-component response regulator [Bacillus cereus BDRD-ST24] gi|229151795|ref|ZP_04279994.1| Two-component response regulator [Bacillus cereus m1550] gi|229179886|ref|ZP_04307232.1| Two-component response regulator [Bacillus cereus 172560W] gi|229191685|ref|ZP_04318664.1| Two-component response regulator [Bacillus cereus ATCC 10876] gi|296504106|ref|YP_003665806.1| two-component response regulator [Bacillus thuringiensis BMB171] gi|29897257|gb|AAP10534.1| Two-component response regulator [Bacillus cereus ATCC 14579] gi|74491807|gb|EAO54998.1| Two-component response regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|206736161|gb|EDZ53319.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|218163189|gb|ACK63181.1| DNA-binding response regulator [Bacillus cereus B4264] gi|218541903|gb|ACK94297.1| DNA-binding response regulator [Bacillus cereus G9842] gi|228591847|gb|EEK49687.1| Two-component response regulator [Bacillus cereus ATCC 10876] gi|228603567|gb|EEK61042.1| Two-component response regulator [Bacillus cereus 172560W] gi|228631608|gb|EEK88238.1| Two-component response regulator [Bacillus cereus m1550] gi|228637226|gb|EEK93681.1| Two-component response regulator [Bacillus cereus BDRD-ST24] gi|228654577|gb|EEL10439.1| Two-component response regulator [Bacillus cereus BDRD-Cer4] gi|228666465|gb|EEL21925.1| Two-component response regulator [Bacillus cereus Rock1-3] gi|228672387|gb|EEL27672.1| Two-component response regulator [Bacillus cereus Rock1-15] gi|228679337|gb|EEL33540.1| Two-component response regulator [Bacillus cereus Rock3-28] gi|228685480|gb|EEL39408.1| Two-component response regulator [Bacillus cereus Rock3-29] gi|228702539|gb|EEL55007.1| Two-component response regulator [Bacillus cereus Rock4-2] gi|228707743|gb|EEL59927.1| Two-component response regulator [Bacillus cereus Rock4-18] gi|228712039|gb|EEL63988.1| Two-component response regulator [Bacillus cereus F65185] gi|228724025|gb|EEL75371.1| Two-component response regulator [Bacillus cereus AH676] gi|228779519|gb|EEM27772.1| Two-component response regulator [Bacillus thuringiensis Bt407] gi|228786064|gb|EEM34061.1| Two-component response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228793217|gb|EEM40767.1| Two-component response regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|228799914|gb|EEM46856.1| Two-component response regulator [Bacillus thuringiensis serovar pakistani str. T13001] gi|228805836|gb|EEM52416.1| Two-component response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228818929|gb|EEM64991.1| Two-component response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228837362|gb|EEM82696.1| Two-component response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228857526|gb|EEN02022.1| Two-component response regulator [Bacillus thuringiensis IBL 4222] gi|296325158|gb|ADH08086.1| two-component response regulator [Bacillus thuringiensis BMB171] Length = 225 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 53/225 (23%), Positives = 97/225 (43%), Gaps = 10/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L++D +++ F ++G + + L + D+ ++ L Sbjct: 6 LLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELFAEHEIDLIMLDIML--PEIDGWS 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120 + R IR S VP+I ++ TL F+ G D+ V KP + ++AR + +R Sbjct: 64 VCRRIRKESAVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGA 123 Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 N I V R V GE L +E +L YLM N+G +++ + + Sbjct: 124 VGVAEENAMSLAGIEVNRLSRTVLVDGEEIILTHKEFELLVYLMENKGIVLSRQHLLDQL 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +G +D ++ V++HI KLR KL +K + + +GY + Sbjct: 184 WG-YDYYGDDRTVDTHIKKLRNKLGDK--AKHIGTVIRVGYKFEE 225 >gi|226308071|ref|YP_002768031.1| two-component response regulator PrrA [Rhodococcus erythropolis PR4] gi|229488493|ref|ZP_04382359.1| DNA-binding response regulator PrrA [Rhodococcus erythropolis SK121] gi|226187188|dbj|BAH35292.1| two-component response regulator PrrA [Rhodococcus erythropolis PR4] gi|229323997|gb|EEN89752.1| DNA-binding response regulator PrrA [Rhodococcus erythropolis SK121] Length = 234 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 51/230 (22%), Positives = 92/230 (40%), Gaps = 11/230 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 +++DD A V G ++ + S R D ++ + G V Sbjct: 7 ILVVDDDADVLTSLERGLRLSGFTVLTAVDGADALRVISDKRPDAVVLDINMPVLDGTGV 66 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARVA 113 + R A +++P+ +S S+ + +SG DD + KP R +L R Sbjct: 67 VTALRA--AGNEIPICVLSARNSVDDRIAGLESGADDYMVKPFVLAELVARIRAMLRRSN 124 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 N G + + GR V G+ PL +RE +LE L N G + + ++ Sbjct: 125 TPAGDHSEGTNTLRVGNLDIDLSGRRVRVDGKEVPLTKREFELLEVLAHNSGIVLTRERL 184 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 ++G +D + NVV+ I LR+K + + + R +G+ + N Sbjct: 185 LELVWG-YDFVADTNVVDVFIGYLRRKFESGGSPRLLHTVRGVGFVLREN 233 >gi|300923861|ref|ZP_07139879.1| transcriptional activator protein Irlr [Escherichia coli MS 182-1] gi|300419894|gb|EFK03205.1| transcriptional activator protein Irlr [Escherichia coli MS 182-1] Length = 260 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 50/219 (22%), Positives = 97/219 (44%), Gaps = 3/219 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D ++ + G ++ + +L + ++ L G Sbjct: 40 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIML--PGMDGW 97 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + +R Q P+I ++ S+ + DSG +D + KP E+LARV A R+ Sbjct: 98 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 157 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 N+ E +R+ S + L R+E ++L L + G+ + +T I S I+G+ Sbjct: 158 LNSSLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 216 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + N V+ I +LR K+ + + + R +GYS Sbjct: 217 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 255 >gi|262371688|ref|ZP_06064967.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter junii SH205] gi|262311713|gb|EEY92798.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter junii SH205] Length = 227 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 43/225 (19%), Positives = 91/225 (40%), Gaps = 7/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + G + F+ + + + ++ + L Sbjct: 4 IMLVEDEVELAQLVRDYLEAAGFEVSMFHDGQDAYTQFQQRKPSLMILDLMV--PRMDGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R +R S +P+I ++ + + G DD + KP +E++ARV A+ RRL+ Sbjct: 62 TICRKVREQSDLPIIMVTARTEEIDRVLGLNMGADDYICKPFSPKELVARVQAVLRRLER 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + R+ + Q + L E R+LE + + G+ ++ Q+ I Sbjct: 122 KAEPEQNDLFRIDKAQQRIWYQQKALTLTPTEFRLLELFLEHLGQVYSRAQLLDHI-NPD 180 Query: 182 DEAVEENVVESHISKLRKKLRNKLG----FDPVDSKRFLGYSIDW 222 V + V++SHI LR+K+ + + + +GY ++ Sbjct: 181 SFDVADRVIDSHIKNLRRKITEAADTGNRHEWIQAVYGVGYRFEY 225 >gi|229828805|ref|ZP_04454874.1| hypothetical protein GCWU000342_00887 [Shuttleworthia satelles DSM 14600] gi|229791968|gb|EEP28082.1| hypothetical protein GCWU000342_00887 [Shuttleworthia satelles DSM 14600] Length = 233 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 54/224 (24%), Positives = 98/224 (43%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQ-SSAREDVSAIEAFLIGKGEKV 60 +++DD ++ DG + E L + ++ L Sbjct: 13 IMVVDDEMRIRKIVRDFLVRDGYDVVEAQDGEEALDLFYQDHEIGLIILDVML--PKLSG 70 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ R IR S+VP++ ++ Q L FD GVD+ ++KP + ++ARV AI RR Sbjct: 71 FDVAREIRETSKVPIVILTAKSDEQDELQGFDIGVDEYISKPFSPKTLVARVQAILRRSG 130 Query: 121 VSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 V E G IR+ V G L +E +L Y M NRG +++ +I ++++ Sbjct: 131 VEEQAKLLEAGGIRLDFVAHTVTVDGREIMLSAKEFELLAYFMENRGIALSREKILNSVW 190 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D + +++H+ KLR K+ K + + +GY + Sbjct: 191 D-YDYFGDARTIDTHVKKLRAKIGEKGS--YIRTIWGMGYKFEV 231 >gi|229070198|ref|ZP_04203454.1| Two-component response regulator vanRB [Bacillus cereus F65185] gi|228712922|gb|EEL64841.1| Two-component response regulator vanRB [Bacillus cereus F65185] Length = 221 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 47/223 (21%), Positives = 91/223 (40%), Gaps = 9/223 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D +++ ++ + + D+ ++ Sbjct: 6 ILVVEDDQEIQELIKQFLMTQHYTVIVASDGLEGMTQFNKQSFDLILLDVM--MPNLNGF 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119 E+ ++IR+ S VP+I ++ + + FD G+DD + KP ++ RV A Sbjct: 64 EVSKMIRSQSNVPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSYD 123 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 K NN +R+ D V L +E IL+ L N K + + I ++G Sbjct: 124 KNVNNHLIFKEVRIDVDAYRVYVNDVEIILTTKEFEILQLLFQNERKVLTRENIVEKVWG 183 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D E ++++HI LRKKL + + + +GY ID Sbjct: 184 -YDYFGETRIIDTHIKNLRKKL----AIPYIKTIKGIGYKIDE 221 >gi|119717163|ref|YP_924128.1| response regulator receiver [Nocardioides sp. JS614] gi|119537824|gb|ABL82441.1| response regulator receiver [Nocardioides sp. JS614] Length = 232 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 47/227 (20%), Positives = 83/227 (36%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQS---SAREDVSAIEAFLIGKGE 58 +++DD ++ +G + + D+ ++ G Sbjct: 4 ILVVDDEPPIRTVLRGYLEAEGFVVSEAADGAAALAELRAGSAEPVDLVLLDVM--MPGM 61 Query: 59 KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AA 114 LE+ R +R + +I ++ L G DD V KP RE+ ARV Sbjct: 62 DGLEVLRRLRTVADTYVILVTARSEEVDKLVGLGVGADDYVTKPFSPREVTARVKSVLRR 121 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + R + V GR+ V G L E +L L+ G+ ++ Q+ Sbjct: 122 RRDGTTGDDPRLRFDELTVDPIGREITVDGAPVRLTALEFDLLHALVRAPGRVFSRAQLL 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220 ++G D +E VV+ HI LR +L + + + R +GY Sbjct: 182 EQVWGN-DFYGDERVVDVHIRNLRAELGDDATDPHLIATVRGVGYKF 227 >gi|255524543|ref|ZP_05391498.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296186042|ref|ZP_06854447.1| putative regulatory protein VanR [Clostridium carboxidivorans P7] gi|255511839|gb|EET88124.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296049310|gb|EFG88739.1| putative regulatory protein VanR [Clostridium carboxidivorans P7] Length = 228 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 42/225 (18%), Positives = 85/225 (37%), Gaps = 10/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + +G + F + + ++ ++ L + Sbjct: 6 ILIVEDDEEINNLIFHTLKKEGYDIVQFFDGKEAVEK-YNNSFNLVILDLML--PYVDGI 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR + P+I +S + G DD + KP RE++ARV A RR Sbjct: 63 EVLRQIRTVNNAPVIILSAMDEETDRIIGLGMGADDYMVKPFSTRELVARVKAQLRRYVY 122 Query: 122 SNNRAETGPIRVFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 N + + L E +L++ + N + K QIF+ Sbjct: 123 YNEDKHNSLLTYDKLKLDTSNYKVFKENRELNLTPIEFELLKFFLENPDRVFTKAQIFNN 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++ + ++N V HI +LR K+ + + + +GY + Sbjct: 183 VW-KNEYVNDDNTVMVHIKRLRNKIEDNPNNPKYIITVWGIGYKL 226 >gi|289424225|ref|ZP_06426008.1| response regulator receiver domain protein [Propionibacterium acnes SK187] gi|289428903|ref|ZP_06430583.1| response regulator receiver domain protein [Propionibacterium acnes J165] gi|295129921|ref|YP_003580584.1| Phosphate regulon transcriptional regulatory protein PhoB; Sensory transduction protein regX3 [Propionibacterium acnes SK137] gi|289154922|gb|EFD03604.1| response regulator receiver domain protein [Propionibacterium acnes SK187] gi|289157904|gb|EFD06127.1| response regulator receiver domain protein [Propionibacterium acnes J165] gi|291375523|gb|ADD99377.1| Phosphate regulon transcriptional regulatory protein PhoB; Sensory transduction protein regX3 [Propionibacterium acnes SK137] gi|313765549|gb|EFS36913.1| response regulator receiver domain protein [Propionibacterium acnes HL013PA1] gi|313772902|gb|EFS38868.1| response regulator receiver domain protein [Propionibacterium acnes HL074PA1] gi|313793076|gb|EFS41143.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA1] gi|313802476|gb|EFS43698.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA2] gi|313806491|gb|EFS44998.1| response regulator receiver domain protein [Propionibacterium acnes HL087PA2] gi|313811042|gb|EFS48756.1| response regulator receiver domain protein [Propionibacterium acnes HL083PA1] gi|313814457|gb|EFS52171.1| response regulator receiver domain protein [Propionibacterium acnes HL025PA1] gi|313815050|gb|EFS52764.1| response regulator receiver domain protein [Propionibacterium acnes HL059PA1] gi|313817360|gb|EFS55074.1| response regulator receiver domain protein [Propionibacterium acnes HL046PA2] gi|313821896|gb|EFS59610.1| response regulator receiver domain protein [Propionibacterium acnes HL036PA1] gi|313824208|gb|EFS61922.1| response regulator receiver domain protein [Propionibacterium acnes HL036PA2] gi|313826576|gb|EFS64290.1| response regulator receiver domain protein [Propionibacterium acnes HL063PA1] gi|313828760|gb|EFS66474.1| response regulator receiver domain protein [Propionibacterium acnes HL063PA2] gi|313831805|gb|EFS69519.1| response regulator receiver domain protein [Propionibacterium acnes HL007PA1] gi|313834651|gb|EFS72365.1| response regulator receiver domain protein [Propionibacterium acnes HL056PA1] gi|313840118|gb|EFS77832.1| response regulator receiver domain protein [Propionibacterium acnes HL086PA1] gi|314915811|gb|EFS79642.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA4] gi|314917083|gb|EFS80914.1| response regulator receiver domain protein [Propionibacterium acnes HL050PA1] gi|314921359|gb|EFS85190.1| response regulator receiver domain protein [Propionibacterium acnes HL050PA3] gi|314926710|gb|EFS90541.1| response regulator receiver domain protein [Propionibacterium acnes HL036PA3] gi|314931318|gb|EFS95149.1| response regulator receiver domain protein [Propionibacterium acnes HL067PA1] gi|314954858|gb|EFS99264.1| response regulator receiver domain protein [Propionibacterium acnes HL027PA1] gi|314958794|gb|EFT02896.1| response regulator receiver domain protein [Propionibacterium acnes HL002PA1] gi|314961083|gb|EFT05184.1| response regulator receiver domain protein [Propionibacterium acnes HL002PA2] gi|314964489|gb|EFT08589.1| response regulator receiver domain protein [Propionibacterium acnes HL082PA1] gi|314969588|gb|EFT13686.1| response regulator receiver domain protein [Propionibacterium acnes HL037PA1] gi|314974654|gb|EFT18749.1| response regulator receiver domain protein [Propionibacterium acnes HL053PA1] gi|314977150|gb|EFT21245.1| response regulator receiver domain protein [Propionibacterium acnes HL045PA1] gi|314980434|gb|EFT24528.1| response regulator receiver domain protein [Propionibacterium acnes HL072PA2] gi|314985752|gb|EFT29844.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA1] gi|314987275|gb|EFT31366.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA2] gi|314989181|gb|EFT33272.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA3] gi|315078496|gb|EFT50527.1| response regulator receiver domain protein [Propionibacterium acnes HL053PA2] gi|315082041|gb|EFT54017.1| response regulator receiver domain protein [Propionibacterium acnes HL078PA1] gi|315082819|gb|EFT54795.1| response regulator receiver domain protein [Propionibacterium acnes HL027PA2] gi|315086175|gb|EFT58151.1| response regulator receiver domain protein [Propionibacterium acnes HL002PA3] gi|315087760|gb|EFT59736.1| response regulator receiver domain protein [Propionibacterium acnes HL072PA1] gi|315097486|gb|EFT69462.1| response regulator receiver domain protein [Propionibacterium acnes HL038PA1] gi|315099937|gb|EFT71913.1| response regulator receiver domain protein [Propionibacterium acnes HL059PA2] gi|315101750|gb|EFT73726.1| response regulator receiver domain protein [Propionibacterium acnes HL046PA1] gi|315110294|gb|EFT82270.1| response regulator receiver domain protein [Propionibacterium acnes HL030PA2] gi|327331428|gb|EGE73167.1| DNA-binding response regulator RegX3 [Propionibacterium acnes HL096PA2] gi|327333415|gb|EGE75135.1| DNA-binding response regulator RegX3 [Propionibacterium acnes HL096PA3] gi|327334938|gb|EGE76649.1| DNA-binding response regulator RegX3 [Propionibacterium acnes HL097PA1] gi|327445567|gb|EGE92221.1| response regulator receiver domain protein [Propionibacterium acnes HL013PA2] gi|327447187|gb|EGE93841.1| response regulator receiver domain protein [Propionibacterium acnes HL043PA1] gi|327449779|gb|EGE96433.1| response regulator receiver domain protein [Propionibacterium acnes HL043PA2] gi|327454628|gb|EGF01283.1| response regulator receiver domain protein [Propionibacterium acnes HL087PA3] gi|327456700|gb|EGF03355.1| response regulator receiver domain protein [Propionibacterium acnes HL083PA2] gi|327457024|gb|EGF03679.1| response regulator receiver domain protein [Propionibacterium acnes HL092PA1] gi|328755683|gb|EGF69299.1| response regulator receiver domain protein [Propionibacterium acnes HL087PA1] gi|328756463|gb|EGF70079.1| response regulator receiver domain protein [Propionibacterium acnes HL025PA2] gi|328758807|gb|EGF72423.1| response regulator receiver domain protein [Propionibacterium acnes HL020PA1] gi|328761843|gb|EGF75355.1| DNA-binding response regulator RegX3 [Propionibacterium acnes HL099PA1] gi|332674761|gb|AEE71577.1| sensory transduction protein RegX [Propionibacterium acnes 266] Length = 226 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 47/223 (21%), Positives = 92/223 (41%), Gaps = 8/223 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++I+D ++ + +G + + + S D+ ++ G E Sbjct: 5 LIIEDEESYREATAFMLRKEGFEVNTAANGADGLEIYSHNGADIVLLDLM--MPGLPGTE 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +R V +I ++ S + + G DD V KP HRE++AR+ A+ RR Sbjct: 63 VCRQLRQRGNVGIIMVTARDSEIDKVVGLELGADDYVTKPFSHRELVARIRAVTRRGGPE 122 Query: 123 NNRAETGPI----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + R+ + + V G L +E +LE L+ N G+ + + + ++ Sbjct: 123 IEVSPDVLEESGVRMDVERHEVSVGGTAVRLALKEFDLLEVLLRNAGRVMTRASLIDRVW 182 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 G D + ++ HI +LR K+ + + + R LGY Sbjct: 183 GA-DYVGDTKTLDVHIKRLRAKIEDDPSRPVRIITVRGLGYKF 224 >gi|88797530|ref|ZP_01113119.1| transcriptional regulatory protein RstA [Reinekea sp. MED297] gi|88779702|gb|EAR10888.1| transcriptional regulatory protein RstA [Reinekea sp. MED297] Length = 234 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 40/226 (17%), Positives = 90/226 (39%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D A + + G + + L + D+ ++ L G+ Sbjct: 6 ILLVEDDASLATWIADYLTNQGYDITLATNGIDAVTLIRDDQPDLVLLDVNL--PGKDGF 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R +R P++ ++ + + G DD + KP+ R +LAR+ + +R Sbjct: 64 DVCREVRVFYHRPILIMTARLEETDEVLGLEMGADDYITKPVRPRALLARIKGLLKRELH 123 Query: 122 SNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + + + R + E + E +L YL ++ G V + Q+ Sbjct: 124 NPVPDVASDQKLRLGALVIDATARTTTLHDEPVRISSNEFDVLWYLASHAGTIVTREQLL 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + GL + + ++ +S++RKKL + D + + GY + Sbjct: 184 KDVRGL-EYDGFDRSMDVLVSRIRKKLGSAEHPDRIKTVWGKGYLL 228 >gi|333024984|ref|ZP_08453048.1| putative two-component system response regulator [Streptomyces sp. Tu6071] gi|332744836|gb|EGJ75277.1| putative two-component system response regulator [Streptomyces sp. Tu6071] Length = 260 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 45/223 (20%), Positives = 87/223 (39%), Gaps = 6/223 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L +D A + + +G +E D+ ++ L G LE Sbjct: 40 LLAEDDASISEPLARALRREGYEVEVREDGPAALEAGMQGAIDLVVLDLGL--PGMDGLE 97 Query: 63 LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-HREILARVAAIYRRLK 120 + R +RA VP++ ++ T+ D+G DD V KP + A + R Sbjct: 98 VARRLRAEGLPVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAG 157 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + T +R+ + + E L +E +L L+ + G+ V + Q+ ++ Sbjct: 158 EAKEAPATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 217 Query: 181 FDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222 + ++ HIS LRKKL + + + R +G+ + Sbjct: 218 TWWS-STKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEK 259 >gi|310287286|ref|YP_003938544.1| Two-component response regulator [Bifidobacterium bifidum S17] gi|311064134|ref|YP_003970859.1| two-component response regulator [Bifidobacterium bifidum PRL2010] gi|313139990|ref|ZP_07802183.1| response regulator [Bifidobacterium bifidum NCIMB 41171] gi|309251222|gb|ADO52970.1| Two-component response regulator [Bifidobacterium bifidum S17] gi|310866453|gb|ADP35822.1| Two-component response regulator [Bifidobacterium bifidum PRL2010] gi|313132500|gb|EFR50117.1| response regulator [Bifidobacterium bifidum NCIMB 41171] Length = 239 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 41/229 (17%), Positives = 83/229 (36%), Gaps = 16/229 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G S + R D+ ++ L L Sbjct: 14 ILVVEDEPTLATAIAQRITAEGWSARVASDGASAVQAAKQLRPDLVIMDIML--PVMDGL 71 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-------- 113 E + I A VP++ ++ + + +G DD + KP RE++AR Sbjct: 72 EATKRIVADRPVPVLILTARDAEADKVIGLGAGADDYMTKPFSMRELIARCKALLRRVER 131 Query: 114 -AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + + G + + R V GE L E +L L + + + Sbjct: 132 AKVIAKNSENEKILNFGSLVIDPAQRLVTVNGEQVHLTPTEFDLLVTLARKPKSVLTREK 191 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + ++ D + V+SH+ LR KL G + + + +GY+ + Sbjct: 192 LLEEVWDWVDASG-TRTVDSHVKALRHKL----GSETIRTVHGVGYAFE 235 >gi|302521367|ref|ZP_07273709.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. SPB78] gi|302430262|gb|EFL02078.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. SPB78] Length = 260 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 45/223 (20%), Positives = 87/223 (39%), Gaps = 6/223 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L +D A + + +G +E D+ ++ L G LE Sbjct: 40 LLAEDDASISEPLARALRREGYEVEVREDGPAALEAGMQGAIDLVVLDLGL--PGMDGLE 97 Query: 63 LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-HREILARVAAIYRRLK 120 + R +RA VP++ ++ T+ D+G DD V KP + A + R Sbjct: 98 VARRLRAEGLPVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAG 157 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + T +R+ + + E L +E +L L+ + G+ V + Q+ ++ Sbjct: 158 EAKEAPATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 217 Query: 181 FDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222 + ++ HIS LRKKL + + + R +G+ + Sbjct: 218 TWWS-STKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEK 259 >gi|302387499|ref|YP_003823321.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] gi|302198127|gb|ADL05698.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] Length = 230 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 47/228 (20%), Positives = 83/228 (36%), Gaps = 10/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD + D ++ + S + L + D++ I+ L Sbjct: 5 ILIIDDEKEITDLIEVFLQNENFQVFKCYSSQDALMLIKNESFDLAIIDVML--PDGNGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARVAA 114 EL ++IR P+I ++ + G DD V KP + L RV Sbjct: 63 ELCKLIREKYTYPIIMLTSKTEGIDRVTGLSLGADDYVTKPFLPLELVARVKAQLRRVQH 122 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + ++ + + + + G+ L E IL L NRGK + ++F Sbjct: 123 YDGKENNTSETLMVMGLFLNKTSHECNLNGKTIKLTPTEFSILWLLCKNRGKVFSADELF 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221 I+G N V I +R+KL + V + +GY I+ Sbjct: 183 QQIWGEKYFKNSRNTVMVQIRHIREKLYDTGNKPKFVKTVWGVGYIIE 230 >gi|225570827|ref|ZP_03779850.1| hypothetical protein CLOHYLEM_06930 [Clostridium hylemonae DSM 15053] gi|225160289|gb|EEG72908.1| hypothetical protein CLOHYLEM_06930 [Clostridium hylemonae DSM 15053] Length = 234 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 48/228 (21%), Positives = 93/228 (40%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDG-VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +L+DD + D D ++ ++ + DV ++ L Sbjct: 5 ILLVDDEKDIVDLLEETLRKDAAYEIKKAHTGAEALSMCREFHPDVIILDIML--PDIDG 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R IR S ++ +S + G DD + KP RE+ RV A RR K Sbjct: 63 LEICRQIRGFSYCSILFLSSRDDDIDKILGLSGGGDDYITKPFSPREVAFRVKAQLRRQK 122 Query: 121 VSNNRAETGPI-------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 ++ + S+ GE L RE +L Y+ N G+ ++K ++ Sbjct: 123 YQHSIPPQQEKLLPAGGLTIDSESCRVCKNGEEIELTGREFLLLSYMAENAGRIISKERL 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + ++G + ++ +N + HI +R+K+ + + + + + LGY + Sbjct: 183 YEQVWGEY-SSICDNTIMVHIRHIREKIEDNPSEPELLVTVKGLGYKL 229 >gi|108801553|ref|YP_641750.1| two component transcriptional regulator [Mycobacterium sp. MCS] gi|119870707|ref|YP_940659.1| two component transcriptional regulator [Mycobacterium sp. KMS] gi|126437538|ref|YP_001073229.1| two component transcriptional regulator [Mycobacterium sp. JLS] gi|108771972|gb|ABG10694.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. MCS] gi|119696796|gb|ABL93869.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. KMS] gi|126237338|gb|ABO00739.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. JLS] Length = 239 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 48/224 (21%), Positives = 85/224 (37%), Gaps = 10/224 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD A + + G + + R D ++ G Sbjct: 16 LVVDDEANIVELLSVSLKFQGFEVHTASDGASALDKARDVRPDAVILDVM--MPGMDGFG 73 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPI-----HHREILARVAAIY 116 L R +RA P + ++ SLQ + G DD V KP R + Sbjct: 74 LLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRTGR 133 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + +R I + D + GE L E +L Y + N G ++K +I Sbjct: 134 GAEEPKTSRLSFADIELDEDTHEVWKAGEPVSLSPTEFTLLRYFIINAGTVLSKPKILDH 193 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +D + NVVES++S LR+K+ + + + R +GY + Sbjct: 194 VW-RYDFGGDVNVVESYVSYLRRKI-DTGERRLLHTLRGVGYVL 235 >gi|75908656|ref|YP_322952.1| two component transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75702381|gb|ABA22057.1| two component transcriptional regulator, winged helix family [Anabaena variabilis ATCC 29413] Length = 222 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 44/224 (19%), Positives = 94/224 (41%), Gaps = 12/224 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ +D + G + + S+ D+ ++ L G+ L Sbjct: 4 ILIAEDEPRIAAFIEKGLRSQGFTTAVATDAYSATNMALSSGFDLMILDLGL--PGKDGL 61 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIY 116 ++ +R VP+I ++ +Q + F++G DD + KP + AR+ Sbjct: 62 DVLEELRGQGENVPVIILTARDDIQDKVAGFEAGADDYLTKPFRFEELLVRVKARLRQSG 121 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + ++G I + R ++ + LP RE + E + G+ +++ Q+ Sbjct: 122 GSQVMEEMVIKSGHIVLDLRSRKVKIGQDTIELPAREFTLAETFFRHPGQVLSREQLLDR 181 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G +D N+V+ ++ LRKKL N D +++ R +GY + Sbjct: 182 VWG-YDYDPGSNIVDVYVGYLRKKLGN----DLIETVRGMGYRL 220 >gi|110642074|ref|YP_669804.1| transcriptional regulatory protein YedW [Escherichia coli 536] gi|110805939|ref|YP_689459.1| transcriptional regulatory protein YedW [Shigella flexneri 5 str. 8401] gi|227885603|ref|ZP_04003408.1| response regulator [Escherichia coli 83972] gi|237705927|ref|ZP_04536408.1| transcriptional regulatory protein YedW [Escherichia sp. 3_2_53FAA] gi|300940426|ref|ZP_07155010.1| transcriptional activator protein Irlr [Escherichia coli MS 21-1] gi|300975470|ref|ZP_07173018.1| transcriptional activator protein Irlr [Escherichia coli MS 45-1] gi|300994173|ref|ZP_07180744.1| transcriptional activator protein Irlr [Escherichia coli MS 200-1] gi|301050665|ref|ZP_07197529.1| transcriptional activator protein Irlr [Escherichia coli MS 185-1] gi|306814209|ref|ZP_07448375.1| transcriptional regulatory protein YedW [Escherichia coli NC101] gi|331647562|ref|ZP_08348654.1| transcriptional activator protein CopR [Escherichia coli M605] gi|26108643|gb|AAN80846.1|AE016762_99 Probable transcriptional Regulatory protein yedW [Escherichia coli CFT073] gi|110343666|gb|ABG69903.1| probable transcriptional regulatory protein YedW [Escherichia coli 536] gi|110615487|gb|ABF04154.1| putative 2-component transcriptional regulator [Shigella flexneri 5 str. 8401] gi|226900684|gb|EEH86943.1| transcriptional regulatory protein YedW [Escherichia sp. 3_2_53FAA] gi|227837176|gb|EEJ47642.1| response regulator [Escherichia coli 83972] gi|281601411|gb|ADA74395.1| Two component heavy metal response transcriptional regulator, winged helix family precursor [Shigella flexneri 2002017] gi|300297662|gb|EFJ54047.1| transcriptional activator protein Irlr [Escherichia coli MS 185-1] gi|300304997|gb|EFJ59517.1| transcriptional activator protein Irlr [Escherichia coli MS 200-1] gi|300410360|gb|EFJ93898.1| transcriptional activator protein Irlr [Escherichia coli MS 45-1] gi|300454767|gb|EFK18260.1| transcriptional activator protein Irlr [Escherichia coli MS 21-1] gi|305852368|gb|EFM52819.1| transcriptional regulatory protein YedW [Escherichia coli NC101] gi|307553979|gb|ADN46754.1| heavy metal response regulator [Escherichia coli ABU 83972] gi|312946560|gb|ADR27387.1| transcriptional regulatory protein YedW [Escherichia coli O83:H1 str. NRG 857C] gi|315286723|gb|EFU46148.1| transcriptional activator protein Irlr [Escherichia coli MS 110-3] gi|315290199|gb|EFU49579.1| transcriptional activator protein Irlr [Escherichia coli MS 153-1] gi|315296452|gb|EFU55752.1| transcriptional activator protein Irlr [Escherichia coli MS 16-3] gi|323956362|gb|EGB52105.1| heavy metal response regulator [Escherichia coli H263] gi|324005926|gb|EGB75145.1| transcriptional activator protein Irlr [Escherichia coli MS 57-2] gi|324013430|gb|EGB82649.1| transcriptional activator protein Irlr [Escherichia coli MS 60-1] gi|331043286|gb|EGI15424.1| transcriptional activator protein CopR [Escherichia coli M605] Length = 260 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 49/219 (22%), Positives = 97/219 (44%), Gaps = 3/219 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D ++ + G ++ + +L + ++ L G Sbjct: 40 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIML--PGMDGW 97 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + +R Q P+I ++ S+ + DSG +D + KP E+LARV A R+ Sbjct: 98 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 157 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 N+ E +++ S + L R+E ++L L + G+ + +T I S I+G+ Sbjct: 158 LNSTLEISGLKMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 216 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + N V+ I +LR K+ + + + R +GYS Sbjct: 217 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 255 >gi|304317403|ref|YP_003852548.1| transcriptional regulator [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778905|gb|ADL69464.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 225 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 45/221 (20%), Positives = 99/221 (44%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D ++G S++ + DV ++ L + Sbjct: 3 ILVVDDEPYLTDLLNKALKEEGYSVDIAQNGIDGMECAKMNVYDVIILDIML--PEIDGI 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119 ++ + +R + P++ ++ +L + D+G DD + KP E+ AR+ A + R Sbjct: 61 QILKNLRNMNINTPILMLTAKDALDDKVKGLDTGADDYMTKPFELSELTARIRALLRREQ 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + + V + D G++ L +E +LEY+M N G+ + ++QI ++G Sbjct: 121 PSKSPILKIADLEVNTLTHDVRRGGKIITLTSKEYSLLEYMMRNSGRVLTRSQIVDHVWG 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ N+++ +I LRKK+ + + + R GY + Sbjct: 181 -YEFDGLSNIIDVYIRYLRKKIDDNFDIKLIQTIRGSGYCL 220 >gi|160935401|ref|ZP_02082783.1| hypothetical protein CLOBOL_00296 [Clostridium bolteae ATCC BAA-613] gi|158441759|gb|EDP19459.1| hypothetical protein CLOBOL_00296 [Clostridium bolteae ATCC BAA-613] Length = 222 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 38/219 (17%), Positives = 91/219 (41%), Gaps = 3/219 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + L +G + + E D+ ++ L Sbjct: 4 ILIVEDDRDIAGNLLLLLKKEGFTAVAVGTREESLEQIRRESFDLVLLDLML--PDGNGY 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + I+ + +P+I ++ ++ + F+ G DD + KP E+++RV + RR Sbjct: 62 SVCTAIKREADIPVIFLTAMGDEESVVTGFELGADDYIAKPFRPLELVSRVKNVLRRRGR 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 S + G + V + G+ L E R+ + +G+ + + ++ I+ + Sbjct: 122 SRSVLRAGDLLVDTVKGTVTRDGQEIILSALEYRLFLVFLNRQGEVLTRNRLLEEIWDIA 181 Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219 + V +N + +I +LR K+ + + +++ R GY Sbjct: 182 GDYVNDNTLTVYIKRLRDKIEKDPAHPEIIETVRGRGYK 220 >gi|330976281|gb|EGH76342.1| phosphate regulon transcriptional regulatory protein PhoB [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 229 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 45/224 (20%), Positives = 92/224 (41%), Gaps = 9/224 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A +++ G + + + + D+ ++ L G + Sbjct: 6 ILIVDDEAPIREMIAVALEMAGYDCIEAENSQQAHPIIVDRKPDLILLDWML--PGTSGI 63 Query: 62 ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IY 116 EL R ++ +P+I ++ + + G DD + KP RE++AR+ A Sbjct: 64 ELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 E G + + + G+ + E R+L++ M ++ + + Q+ Sbjct: 124 AGPTDGEAPIEVGGLLLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAYTRGQLLDQ 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + VEE V+ HI +LRK L + + V + R GY Sbjct: 184 VWG-GNVYVEERTVDVHIRRLRKALGDAYE-NLVQTVRGTGYRF 225 >gi|321314045|ref|YP_004206332.1| two-component response regulator YclK [Bacillus subtilis BSn5] gi|320020319|gb|ADV95305.1| two-component response regulator (YclK) [Bacillus subtilis BSn5] Length = 227 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 49/229 (21%), Positives = 91/229 (39%), Gaps = 11/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D V F +G E + + D+ ++ L + Sbjct: 3 ILMIEDNVSVCTMTEMFFFKEGFEAEFVHDGLEGYQRFTEENWDLIILDIML--PSMDGV 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 + R IR S VP+I ++ + + F+ G DD V KP ++AR+ A+ RR K Sbjct: 61 TICRKIRETSTVPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARIKAVIRRYKA 120 Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + V L +E +L YL+ N+ + ++ Q+ Sbjct: 121 TGKAVIDEDMIETECFTINKKTREVLLNGEPVENLTPKEFDLLYYLVQNQRQVFSREQLL 180 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 ++G + +E V+ HI +LRKKL ++ + + +GY D + Sbjct: 181 EQVWG-YQFYGDERTVDVHIKRLRKKLASEDKP-FLYTVWGVGYKFDED 227 >gi|289705109|ref|ZP_06501513.1| response regulator receiver domain protein [Micrococcus luteus SK58] gi|289558137|gb|EFD51424.1| response regulator receiver domain protein [Micrococcus luteus SK58] Length = 226 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 45/220 (20%), Positives = 81/220 (36%), Gaps = 5/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + +DG R D+ ++ L G + Sbjct: 6 ILVVDDDEALAEMIGIVLRNDGFEPAFAADGTSALPAFHRERPDLVLLDLML--PGIDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120 E+ R+IR S VP++ ++ + +SG DD V KP E++ARV A Sbjct: 64 EVCRLIRDESDVPIVMLTAKSDTADVVRGLESGADDYVPKPFKPAELVARVRARLREGEA 123 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 G + + G G L E +L L + + ++G Sbjct: 124 KPAEVLHIGDLEIDVAGHQVTRAGVGIALTPLEFDLLVALARRPRHVFTREMLLEEVWGY 183 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVD-SKRFLGYS 219 +A + +V H+ +LR K+ V + R +GY Sbjct: 184 RHQA-DTRLVNVHVQRLRSKVEPDPENPCVVLTVRGVGYK 222 >gi|257094547|ref|YP_003168188.1| winged helix family two component transcriptional regulator [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047071|gb|ACV36259.1| two component transcriptional regulator, winged helix family [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 243 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 51/229 (22%), Positives = 98/229 (42%), Gaps = 11/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + G L + R D+ ++ L G Sbjct: 5 LLLVEDDDAIAAALRLHLEAAGYRLHRESDGLQAMAAIDRQRWDMVLLDLML--PGADGW 62 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ R +RA H+ VP+I +S + + + G DD + KP E++ARV A+ RR++ Sbjct: 63 DVCRHLRARHADVPVIMLSARSAEAHRVLGLELGADDYLAKPFSMLELVARVRALLRRIE 122 Query: 121 VSNNRA------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + GP R+ + R+ +V PL RE +L +L + G+ ++ ++ Sbjct: 123 QLRSSPALASELRFGPFRLDTVRRELLRGDDVVPLTLREFDLLYFLARHPGRVFSRGELL 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 ++G E+ V SHI++LR K+ + + + +GY + Sbjct: 183 QRVWGAA-FDGYEHTVNSHINRLRTKIEDDPRDPRRIVTVWGVGYRFEE 230 >gi|228988075|ref|ZP_04148175.1| Two-component response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228771645|gb|EEM20111.1| Two-component response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 229 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 53/229 (23%), Positives = 90/229 (39%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++++ F + + + + D+ ++ L Sbjct: 5 ILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEIDLVILDIML--PELDGW 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR-------EILARVAA 114 + R IR S+VP+I ++ TL F+ G DD V KP +L Sbjct: 63 SVCRRIRKTSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLESRKV 122 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + L+ ++ I V R V L E IL YLM N+G + + Q+ Sbjct: 123 TKQLLENEDDTLSIHGIHVHFPSRTVTVDKTDINLTHTEFEILAYLMKNQGIVLTREQLI 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 S I+G ++ A ++ V SHI LR KL K V + GY + N Sbjct: 183 SRIWG-YEFAGDDRTVNSHIRNLRNKLGEK--AKYVTTVVRTGYKFEGN 228 >gi|254391635|ref|ZP_05006833.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|326441458|ref|ZP_08216192.1| putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|197705320|gb|EDY51132.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 225 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 43/223 (19%), Positives = 86/223 (38%), Gaps = 6/223 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L +D A + + +G +E + D+ ++ L G LE Sbjct: 5 LLAEDDASISEPLARALRREGYEVEVREDGPAALEAGLAGGVDLVVLDLGL--PGMDGLE 62 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-HREILARVAAIYRRLK 120 + R +R+ P++ ++ T+ D+G DD V KP + A + R Sbjct: 63 VARRLRSEGHTVPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAT 122 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 T +R+ + + E L +E +L L+ + G+ V + Q+ ++ Sbjct: 123 EPAPAPSTHGVRIDVESHRAWMGEEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 182 Query: 181 FDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222 + ++ HIS LRKKL + + + R +G+ + Sbjct: 183 TWWS-STKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEK 224 >gi|168752198|ref|ZP_02777220.1| heavy metal response regulator [Escherichia coli O157:H7 str. EC4113] gi|168757600|ref|ZP_02782607.1| heavy metal response regulator [Escherichia coli O157:H7 str. EC4401] gi|195940656|ref|ZP_03086038.1| transcriptional regulatory protein YedW [Escherichia coli O157:H7 str. EC4024] gi|261227539|ref|ZP_05941820.1| transcriptional regulatory protein YedW [Escherichia coli O157:H7 str. FRIK2000] gi|261254637|ref|ZP_05947170.1| transcriptional regulatory protein YedW [Escherichia coli O157:H7 str. FRIK966] gi|291283144|ref|YP_003499962.1| Heavy metal response regulator [Escherichia coli O55:H7 str. CB9615] gi|188013893|gb|EDU52015.1| heavy metal response regulator [Escherichia coli O157:H7 str. EC4113] gi|189355396|gb|EDU73815.1| heavy metal response regulator [Escherichia coli O157:H7 str. EC4401] gi|290763017|gb|ADD56978.1| Heavy metal response regulator [Escherichia coli O55:H7 str. CB9615] gi|320191940|gb|EFW66587.1| Putative two-component system response regulator YedW [Escherichia coli O157:H7 str. EC1212] gi|320641815|gb|EFX11203.1| transcriptional regulatory protein YedW [Escherichia coli O157:H7 str. G5101] gi|320668529|gb|EFX35356.1| transcriptional regulatory protein YedW [Escherichia coli O157:H7 str. LSU-61] gi|326344882|gb|EGD68629.1| Putative two-component system response regulator YedW [Escherichia coli O157:H7 str. 1125] Length = 260 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 50/219 (22%), Positives = 97/219 (44%), Gaps = 3/219 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D ++ + G ++ + +L + ++ L G Sbjct: 40 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIML--PGMDGW 97 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + +R Q P+I ++ S+ + DSG +D + KP E+LARV A R+ Sbjct: 98 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 157 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 N+ E +R+ S + L R+E ++L L + G+ + +T I S I+G+ Sbjct: 158 LNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 216 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + N V+ I +LR K+ + + + R +GYS Sbjct: 217 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 255 >gi|34495671|ref|NP_899886.1| response regulator OmpR [Chromobacterium violaceum ATCC 12472] gi|34101526|gb|AAQ57895.1| response regulator OmpR [Chromobacterium violaceum ATCC 12472] Length = 243 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 42/232 (18%), Positives = 87/232 (37%), Gaps = 15/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A +++ G +E + + + R D+ ++ GE L Sbjct: 6 ILVVDDDAKLRELLTRYLTQQGYIVETLPDPKDLDRKLARNRPDLIVLDVM--MPGEDGL 63 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILAR 111 + R +RA + P+I ++ + + G DD + KP + RE Sbjct: 64 AVVRRLRAQGETLPVIMLTARGEDIDRILGLEMGADDYLPKPFNPRELTARIQSVLRRHH 123 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 L +++ E G + R+ G+ L E +L L+++ + + + Sbjct: 124 ATPALAALHNADDVVEFGEFVLNLGQRELRRAGQPVSLTSAEFAVLSVLVSHPRRPLTRE 183 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR---NKLGFDPVDSKRFLGYSI 220 Q+ G + + ++ HIS+LRK L + + + GY Sbjct: 184 QLMELALGKGNGESLDRSIDVHISRLRKALESGDSDSQLRYIQTVWGYGYVF 235 >gi|114320264|ref|YP_741947.1| two component transcriptional regulator [Alkalilimnicola ehrlichii MLHE-1] gi|114226658|gb|ABI56457.1| two component transcriptional regulator, winged helix family [Alkalilimnicola ehrlichii MLHE-1] Length = 229 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 47/222 (21%), Positives = 84/222 (37%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +L++D A V++ + G + G + + D+ ++ L G Sbjct: 5 ILLVEDDAAVREMLLLPLRRAGFEITGVADVAQGKAALLERVPDLILLDWMLPDVSGIDW 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + VPLI ++ + + + G DD V KP RE++AR+ A+ RR Sbjct: 65 ARELKRDPFTRDVPLIMLTARGEEEDKVRGLEVGADDYVTKPFSPRELIARIRAVLRRTT 124 Query: 121 VSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + G + E R+L + M ++ + + Q+ ++ Sbjct: 125 PDAGDQPVEVEGLTLDPVSHRVSGNGRTLDMGPTEFRLLHFFMTHQERVYTRGQLLDNVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G + VEE V+ HI +LRK L V + R GY Sbjct: 185 GT-NVYVEERTVDVHIRRLRKVLAESGHDHLVQTVRGTGYRF 225 >gi|241896075|ref|ZP_04783371.1| response regulator [Weissella paramesenteroides ATCC 33313] gi|241870675|gb|EER74426.1| response regulator [Weissella paramesenteroides ATCC 33313] Length = 239 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 39/230 (16%), Positives = 84/230 (36%), Gaps = 13/230 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD ++ G + + + + D+ ++ L E ++ Sbjct: 5 LVVDDEPSLQTLLTYNLKKSGFDVVSAVDGKQALDIIHEQKIDIVLLDIML--PEESGVD 62 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPI---------HHREILARV 112 + R +RA P+I ++ + + G DD V KP H Sbjct: 63 VTRELRAEKNQIPIIMLTALDDEIDKVVGLEIGADDYVTKPFSPREVIARVHAVLRRFSQ 122 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + + G + + D + GE+ L +E +L Y+ G+ +++ Sbjct: 123 KTQTEKEQSVKHSQSYGRLTIDFDKMVVQFDGEIVKLTPKEYELLAYMAEREGRVLSRET 182 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 I ++G + +V+ H+S LR K+ + + + R GY D Sbjct: 183 ILDGVWGYEFSGPDTRMVDMHLSHLRDKIELDPKHPVYLKTVRGFGYRFD 232 >gi|158340812|ref|YP_001521980.1| two-component transcriptional regulator/diguanylate cyclase (GGDEF) [Acaryochloris marina MBIC11017] gi|158311053|gb|ABW32666.1| two-component transcriptional regulator/diguanylate cyclase (GGDEF) [Acaryochloris marina MBIC11017] Length = 792 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 47/222 (21%), Positives = 92/222 (41%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D LV + L D ++E + L + D+ + L + Sbjct: 3 ILVVEDDELVAEALQTLLVDLNYAVELATDGQTAAELVEAFEYDLILSDVML--PRLDGV 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119 L + +R+ P++ ++ S D+G DD V KP E+ ARV A + R Sbjct: 61 GLCQQLRSQGYQIPILLLTGKDSSHDRAIGLDAGADDYVVKPFDPEELAARVRALLRRGE 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + +++ + + Q + L +E ++E +M N + + I I+ Sbjct: 121 AIKPPILKWENLQLDPRACEVKYQDVLLKLTPKEYALVELMMRNTRRVFSCGMILEHIWT 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220 D EE V +HI LR+KL+ D +++ +GY + Sbjct: 181 YEDTPGEE-AVRTHIKGLRQKLKASGAPTDLIETVYGIGYRL 221 Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 12/81 (14%), Positives = 34/81 (41%), Gaps = 1/81 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +++DD + + AL G+ + G + +++ D+ ++ + G + Sbjct: 490 IMIVDDDPQILETVAALCKPWGLEVIGLDEPTQFWETLTNSPPDLLLLDVEMPEIGGIDL 549 Query: 61 LELPRIIRAHSQVPLIGISDY 81 + R Q+P+I ++ + Sbjct: 550 CRVVRNDIQWEQLPIIFLTAH 570 >gi|313122882|ref|YP_004033141.1| alkaline phosphatase synthesis transcriptional regulatory proteinphop [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312279445|gb|ADQ60164.1| Alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 242 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 46/233 (19%), Positives = 94/233 (40%), Gaps = 19/233 (8%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G +E E D+ ++ L + L Sbjct: 5 ILVVDDEKPISDIIKFNLTKEGFDVETAYDGEEAVEKVEEYNPDLMILDLML--PKKDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-------- 113 E+ R +R +P+I ++ S + + G DD V KP +RE++ARV Sbjct: 63 EVAREVRQTHDMPIIMVTAKGSEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRSRDI 122 Query: 114 -------AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166 + + +N + G + + D E GE L RE +L Y+ + + Sbjct: 123 VKKAVEVNQQKEKEQESNDIQIGNLLIKPDAYLVEKNGEKIELTHREFDLLYYMAQHMDQ 182 Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGY 218 + + + ++G +D + V+ + +LR+K+ + + ++R +GY Sbjct: 183 VMTREHLLQTVWG-YDYFGDVRTVDVTVHRLREKIEDNPVRPKILVTRRGVGY 234 >gi|307324828|ref|ZP_07604034.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] gi|306889710|gb|EFN20690.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] Length = 225 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 46/221 (20%), Positives = 85/221 (38%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A +++ +G ++E L S ++ L G Sbjct: 3 ILVVEDDARLRELLTEGLEQEGFTIETAADGLSGLALARSGGYAAIVLDVML--PGCSGY 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +L +R P++ ++ D D G DD + KP ++ARV A+ RR Sbjct: 61 QLCSRLREKGDWTPILMLTAKDGEYDEADGLDVGADDYLTKPFSFVVLIARVRALVRRGG 120 Query: 121 VSNNRAETGPIRVFSDGRDPE-VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + E L +E +LEYL G+ V+K++I +++ Sbjct: 121 LDRPDVLELGDLRLEPAALACARGKEEVTLTAKEFAVLEYLARRAGQVVSKSEIVQSVWD 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 N+VE +I LR+K+ G + + R GY + Sbjct: 181 TA-YDGGANLVEVYIRSLRRKIDVPYGRQSIRTIRGAGYLL 220 >gi|291543637|emb|CBL16746.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus sp. 18P13] Length = 236 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 47/230 (20%), Positives = 95/230 (41%), Gaps = 12/230 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 + DD ++D + DG + F + + +A D+ ++ G L Sbjct: 5 IYIADDEKNIRDLIKSFLESDGYRVWAFETGDALMGAFQAAPADLVILDIM--MPGTDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + +RA + VP+I ++ S + G DD + KP +L RV ++ RR+++ Sbjct: 63 TICQQLRAKTDVPIIMLTAKDSEYDYVQGITIGSDDYLTKPFRPTTLLMRVRSLLRRMEM 122 Query: 122 SNNRAETGPIRVF---------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 ++ R ++ G+ + E R+L Y+M GK A+ + Sbjct: 123 NSRRPVQPEEPDDLVVGDLTFSAEANTISCNGKGIGFTQTELRMLSYMMQKPGKAYARDK 182 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + I+G ++ VE V + + ++R+KL V + GY ++ Sbjct: 183 LLETIWG-YETEVETRVTDETLRRIRRKLSLAGSSVCVQTIWGYGYKLEV 231 >gi|268607886|ref|ZP_06141617.1| two component transcriptional regulator [Ruminococcus flavefaciens FD-1] Length = 223 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 44/222 (19%), Positives = 97/222 (43%), Gaps = 3/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + ++G +++ + + D+ ++ L Sbjct: 4 LLLVEDDKEIIVNLTEFLSNEGFTVKNVTGQAAALDIIEKEKFDLVLLDVSLA--DGNGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + I++ P+I ++ +T+ FD G DD + KP RE+++R+ + R Sbjct: 62 AVCSAIKSDGATPVIFLTASSDEFSTVTGFDLGADDYIAKPFRPRELISRIKNVLRLTGN 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + + G + V + G L E R+L + NRG +++T++ +I+ + Sbjct: 122 TGSVTQLGDVLVDTVKGTASKNGNDLYLSALEYRLLLVFINNRGAVLSRTKLLESIWDIA 181 Query: 182 DEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 E V +N + +I +LR+K+ + + + R LGY +D Sbjct: 182 GEYVNDNTLTVYIKRLREKIEDDPQDPKIIRTVRGLGYKVDV 223 >gi|257866229|ref|ZP_05645882.1| transcriptional regulator [Enterococcus casseliflavus EC30] gi|257873257|ref|ZP_05652910.1| transcriptional regulator [Enterococcus casseliflavus EC10] gi|257875864|ref|ZP_05655517.1| transcriptional regulator [Enterococcus casseliflavus EC20] gi|325567671|ref|ZP_08144338.1| response regulator [Enterococcus casseliflavus ATCC 12755] gi|257800187|gb|EEV29215.1| transcriptional regulator [Enterococcus casseliflavus EC30] gi|257807421|gb|EEV36243.1| transcriptional regulator [Enterococcus casseliflavus EC10] gi|257810030|gb|EEV38850.1| transcriptional regulator [Enterococcus casseliflavus EC20] gi|325159104|gb|EGC71250.1| response regulator [Enterococcus casseliflavus ATCC 12755] Length = 241 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 40/227 (17%), Positives = 82/227 (36%), Gaps = 9/227 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD + + ++G + + D+ + ++ + Sbjct: 15 ILVADDDKEIVELLSIYLHNEGYESVKAYDGKEALTKIRTTS-DIELLILDIMMPEMDGM 73 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILA------RVAAI 115 ++ + +R SQ+P+I ++ + + +G DD V KP + E++A R + Sbjct: 74 QVVKELRKESQIPIIMLTAKTTDMDKIRGLVAGADDYVTKPFNPLEVMARVKSLLRRTKM 133 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + I V G L E IL L ++ + + +IF Sbjct: 134 QAASNQPEILEVSSLIINRDSHEVKTVDGNEIQLTALEFGILYLLASHPNRVFSADEIFE 193 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 ++ + V V H+S LR K+ G + + +GY ID Sbjct: 194 RVW-KQESVVSAKTVMVHVSHLRDKIEEATDGEKVIQTVWGVGYKID 239 >gi|315651418|ref|ZP_07904443.1| response regulator [Eubacterium saburreum DSM 3986] gi|315486377|gb|EFU76734.1| response regulator [Eubacterium saburreum DSM 3986] Length = 235 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 49/232 (21%), Positives = 87/232 (37%), Gaps = 15/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D DG ++ N+ E + ++ ++ G L Sbjct: 6 ILVVDDEKEIADLVEIYLVSDGYTVFKANNAEDGLAIIEKEDIHLAILDIM--MPGMDGL 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IR P+I +S + + +G DD V KP + E+ ARV + RR Sbjct: 64 EMCKKIRESYNFPIILLSAKSADIDKILGLGTGADDYVTKPFNTLELTARVKSQLRRYTQ 123 Query: 122 SNNRAETGP-----------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 N + + D + + L E IL L +N GK + Sbjct: 124 LNPNNIVVEKEDPNEIRLKGMIINKDNHKVIIDDKEIKLTPIEFDILYLLASNAGKVFST 183 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221 +IF ++ N V HI +LR K+ + + + +GY I+ Sbjct: 184 DEIFERVWNEKVYEAN-NTVMVHIRRLRGKMNEDARVNKIITTVWGVGYKIE 234 >gi|317057519|ref|YP_004105986.1| winged helix family two component transcriptional regulator [Ruminococcus albus 7] gi|315449788|gb|ADU23352.1| two component transcriptional regulator, winged helix family [Ruminococcus albus 7] Length = 224 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 49/221 (22%), Positives = 97/221 (43%), Gaps = 7/221 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A ++ A +G + + D+ + Sbjct: 4 ILVVEDDASLRRLMSAALKQNGYQPFTASDGIEALDMLEKTNIDLIISDIM--MPNMDGY 61 Query: 62 ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL R + A+ Q+P+I ++ S + FD+G DD + KPI E++ RV A+ +R K Sbjct: 62 ELTRQLRNANFQMPIIMVTAKESFEDKKIGFDAGTDDYMVKPIDINEMILRVGALLKRSK 121 Query: 121 VSNNRAETGPIRVFSD--GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 +++ T V + +P+ E ++L L++ K + Q+ ++ Sbjct: 122 LASEHTMTVGNCVLDYDAQTVAFDGQQGETIPQMEFKLLFKLLSYPNKIFTRRQLLDELW 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 G+ D+ V+E V+ HI +LR++ + F + + R LGY Sbjct: 182 GM-DKDVDERTVDVHIKRLRERYGSAEAFS-IVTVRGLGYK 220 >gi|282864678|ref|ZP_06273733.1| two component transcriptional regulator, winged helix family [Streptomyces sp. ACTE] gi|282560617|gb|EFB66164.1| two component transcriptional regulator, winged helix family [Streptomyces sp. ACTE] Length = 236 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 37/225 (16%), Positives = 71/225 (31%), Gaps = 7/225 (3%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEK 59 M + +D A + +G ++ D+ ++ + G Sbjct: 1 MI-VAEDDAKQAELVRRYLEREGHAVTVVADGLAALEQARQGEPDLLVLDVMMPRADGLD 59 Query: 60 VLELPR---IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 V+ + R A + D L L D + + R Sbjct: 60 VVRVLRSEGRELAVLMLTARSTEDDLLLGLDLGADDYMTKPYSPRELMARVRTLLRRTRR 119 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + G + V + V G E R+L + A G+ + Q+ + Sbjct: 120 DADRQDDPVVRVGALAVDPRRHEVAVDGVRITCTPGEFRLLAAMAAEPGRVFTREQLLAE 179 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 ++G FD + V+ HI LRKK+ D + + +GY + Sbjct: 180 LHG-FDRYISSRTVDVHIMNLRKKIEQAPRRPDRLLTVFGVGYKL 223 >gi|229061164|ref|ZP_04198514.1| Two-component response regulator [Bacillus cereus AH603] gi|228718035|gb|EEL69675.1| Two-component response regulator [Bacillus cereus AH603] Length = 225 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 53/225 (23%), Positives = 97/225 (43%), Gaps = 10/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L++D +++ F ++G + + L + D+ ++ L Sbjct: 6 LLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELFAEHTIDLIMLDIML--PEIDGWS 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120 + R IR S VP+I ++ TL F+ G D+ V KP + ++AR + +R Sbjct: 64 VCRRIRKESAVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGA 123 Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 N I V R V GE L +E +L YLM N+G +++ + + Sbjct: 124 LGVSEENTMSLAGIEVNRLSRTVLVDGEEIILTHKEFELLVYLMENKGIVLSRQHLLDQL 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +G +D ++ V++HI KLR KL +K + + +GY + Sbjct: 184 WG-YDYYGDDRTVDTHIKKLRNKLGDK--AKHIGTVIRVGYKFEE 225 >gi|229154965|ref|ZP_04283079.1| Two-component response regulator [Bacillus cereus ATCC 4342] gi|228628523|gb|EEK85236.1| Two-component response regulator [Bacillus cereus ATCC 4342] Length = 209 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 38/214 (17%), Positives = 77/214 (35%), Gaps = 7/214 (3%) Query: 11 VKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH 70 ++ + G + + + D ++ L + + IR Sbjct: 1 MRQLVGMYLDNFGYEWGEAENGKEALKKLETNHYDFVVLDIM--MPEMDGLSVCKEIRKT 58 Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRLKVSNNRAET 128 S VP+I ++ ++ G DD + KP E+ + + Sbjct: 59 SDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTKQEQQEEIQF 118 Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188 GPI + R E GE L +E +L +L + G+ ++ Q+ ++G +D A Sbjct: 119 GPILINEKSRKIEADGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG-YDYAGSTR 177 Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 V++H+ +R KL + + +GY + Sbjct: 178 TVDTHVKTMRLKLGESGN--YIQTVWGVGYKFEV 209 >gi|218289377|ref|ZP_03493611.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius LAA1] gi|218240483|gb|EED07664.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius LAA1] Length = 235 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 50/220 (22%), Positives = 98/220 (44%), Gaps = 5/220 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + +G +++ + V ++ + G E Sbjct: 18 LVVDDEPSIVKFLEFGLRREGYAVDTARDGVEAIAKARESMPHVCILDVMMPGP--DGFE 75 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-AIYRRLKV 121 + R++++ V +I ++ ++ + G DD V KP E+LAR+ + + Sbjct: 76 VCRMLKSMGNVAVILLTARDAIDDRVKGLVGGADDYVVKPFSFEELLARIHARVRNQFPS 135 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 R E GP + ++ +GE L E +L YL+ N G ++K QI ++G + Sbjct: 136 LLKRQEMGPFVIDDARKEISFRGETLKLSSTEYELLRYLLQNHGLVLSKAQILDHVWG-Y 194 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D ++N+VE +IS LR+KL ++ + + R GY +D Sbjct: 195 DFNGQDNIVEVYISALREKLGDR-DRTLIRTLRGQGYRVD 233 >gi|91779281|ref|YP_554489.1| two component transcriptional regulator [Burkholderia xenovorans LB400] gi|91691941|gb|ABE35139.1| two component transcriptional regulator, winged helix family [Burkholderia xenovorans LB400] Length = 248 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 44/228 (19%), Positives = 88/228 (38%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + D+ + L D ++ L G L Sbjct: 7 ILIVEDDVDIANVLSLHLRDERYEVVHSADGNEGLRLLEQGGWDALILDLML--PGVDGL 64 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARVA 113 E+ R RA P+I S S + + G DD + KP + +L RV Sbjct: 65 EICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVD 124 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 A+ + ++ + + R+ G+ L RE +L Y + GK ++ + Sbjct: 125 ALAKDSRIEAGNLRIAGLSIDPLTREAAANGKPIELTPREFDLLYYFAQHPGKVFSRMDL 184 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 +A++G + E+ V +HI++LR K+ + + + + GY + Sbjct: 185 LNAVWG-YQHEGYEHTVNTHINRLRAKIEADPAQPERILTVWGRGYKL 231 >gi|42784424|ref|NP_981671.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|229158824|ref|ZP_04286882.1| DNA-binding response regulator [Bacillus cereus ATCC 4342] gi|42740356|gb|AAS44279.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|228624808|gb|EEK81577.1| DNA-binding response regulator [Bacillus cereus ATCC 4342] Length = 223 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 42/226 (18%), Positives = 88/226 (38%), Gaps = 12/226 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +++ +G + + DV ++ L Sbjct: 3 ILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEG-PDVLILDVML--PDTDGY 59 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL R+ R +P++ ++ + L G DD V KP ++ E++ RV + RR+K Sbjct: 60 ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRVK 119 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEV-----FPLPRRERRILEYLMANRGKRVAKTQIFS 175 I P+ + L RE + + ++N + + ++ Sbjct: 120 KKEVTVSHEVIGAGEITICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 179 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G F+ V+ + +LRKKL N + + + +GY +D Sbjct: 180 KVWG-FEYIGNTRAVDIMVQRLRKKLGNSG--EYIKTIYGVGYKLD 222 >gi|148546949|ref|YP_001267051.1| two component transcriptional regulator [Pseudomonas putida F1] gi|148511007|gb|ABQ77867.1| two component transcriptional regulator, winged helix family [Pseudomonas putida F1] Length = 231 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 49/223 (21%), Positives = 94/223 (42%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD ++ G + + + + D+ ++ L Sbjct: 7 LLVIDDEPQIRKFLRISLASQGYKVLEAATGAEGLAQAALGKPDLVVLDLGL--PDMDGQ 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R +R S VP++ +S S +D D G +D V KP +E LARV A+ R++ Sbjct: 65 QVLRELREWSAVPVMVLSVRASEVQKVDALDGGANDYVTKPFGIQEFLARVRALLRQVPQ 124 Query: 122 ---SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 S A GP+ V R ++G L R+E +L L + G+ + + Q+ I+ Sbjct: 125 AGGSEVAASFGPLTVDFAFRRVTLEGLEVALTRKEYALLALLAGHPGRVITQQQLLKDIW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 G + + + + LR+KL + + ++ +GY + Sbjct: 185 GPTHAE-DTHYLRIVVGHLRQKLGDDPTAPRFIITEAGVGYRL 226 >gi|291521712|emb|CBK80005.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Coprococcus catus GD/7] Length = 229 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 42/227 (18%), Positives = 87/227 (38%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G + ++ + + ++ ++ L Sbjct: 4 ILIVEDEVAIAELEKDYLELSGFDVVMQHTGDAGLKAALNEDFNLIILDLML--PNVDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + +R P+I +S + G DD + KP E++ARV A R + Sbjct: 62 EICKKVREKKNTPIIMVSAKKEDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARYER 121 Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 +N E I++ R V GE +E +L +L N K ++F Sbjct: 122 LVGSGVKANEIIEIRGIKIDKTARRVYVNGEEKAFTTKEFDLLTFLAENPNHVFTKEELF 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + I+ + + + V HI K+R+K+ N +++ +GY Sbjct: 182 NKIWDM-ESIGDIATVTVHIKKIREKIEFNTSKPQYIETIWGVGYRF 227 >gi|229167490|ref|ZP_04295228.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus AH621] gi|228616052|gb|EEK73139.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus AH621] Length = 224 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 49/223 (21%), Positives = 94/223 (42%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + D +G ++ D+ ++ L G L Sbjct: 4 ILIIEDEESLADFLELELKYEGYIVDIQLDGRKGLEAALENSYDLILLDLML--PGLNGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +RA P+I ++ S+ + DSG DD + KP E+LAR+ I+RR + Sbjct: 62 EVCRRLRATKSTPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARMRVIFRREEN 121 Query: 122 SNNRAETGPIRVF----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + + + R + E L +E +L M N + + + + + Sbjct: 122 TEQKHASFLSFKDLQLQIESRTITKENEEIELTNKEFELLLMFMKNINRVLTRDILLDQV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G +D VE N+V+ ++ LR KL + + + + R GY + Sbjct: 182 WG-YDAMVETNIVDVYVRYLRNKLHSVDKEEYIQTVRGAGYIM 223 >gi|262193593|ref|YP_003264802.1| transcriptional regulator [Haliangium ochraceum DSM 14365] gi|262076940|gb|ACY12909.1| two component transcriptional regulator, winged helix family [Haliangium ochraceum DSM 14365] Length = 227 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 88/224 (39%), Gaps = 10/224 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD + ++D DG +E + + D+ ++ + L Sbjct: 6 ILVADDESNIRDVVQYALERDGYRVETAADGQSALARIEAGGIDLVILDV--LMPELDGL 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI------ 115 L R +R VP+I +S + + G DD V KP RE+ RV A+ Sbjct: 64 NLCRKLRERGDVPIIFLSSRSEEADRILGLELGGDDYVTKPFSPRELATRVKAVLRRVAA 123 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 R + + + + V + L E R+L ++ G+ + ++Q+ Sbjct: 124 RRGADDAPPALVYERLTLDPAAHELRVDDDKIALTVTEFRVLHAILERPGRVLTRSQLID 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 Y V E +++HI ++R KLR G + +++ LGY Sbjct: 184 RAY-EDGLHVSERTIDTHIRRIRAKLR-PYGIEAIETVHGLGYK 225 >gi|206971849|ref|ZP_03232798.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|229151075|ref|ZP_04279283.1| Two component transcriptional regulator, winged helix [Bacillus cereus m1550] gi|206733234|gb|EDZ50407.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|228632386|gb|EEK89007.1| Two component transcriptional regulator, winged helix [Bacillus cereus m1550] Length = 215 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 39/220 (17%), Positives = 94/220 (42%), Gaps = 11/220 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++ DD + A F +G + E + + D++ ++ + Sbjct: 4 LIADDEQDMLRILKAYFEKEGFEVLLAKDGEEALQIFYDEKIDLAILDWM--MPKHSGIT 61 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + I+ +S V ++ ++ + L SG D+ V KP H ++ R ++L Sbjct: 62 VCQEIKKNSSVKVLMLTAKSESEDELAALQSGADEYVKKPFHPGVLITRA----KKLIQH 117 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 +N + +++ + + E +++ + ++G + + ++ ++G FD Sbjct: 118 DNIIQVQDVKINFAKNKVYKNDIELEITKTELELIKCFLNHKGTILTRKKLLDIVWG-FD 176 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 EE V++H+ +LRKK+ + + + R LGYS++ Sbjct: 177 YFGEERTVDTHVRRLRKKIGE----NIIKTHRGLGYSLEE 212 >gi|329927919|ref|ZP_08281947.1| putative transcriptional regulatory protein afsQ1 [Paenibacillus sp. HGF5] gi|328938138|gb|EGG34534.1| putative transcriptional regulatory protein afsQ1 [Paenibacillus sp. HGF5] Length = 228 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 42/223 (18%), Positives = 80/223 (35%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + + +G + + + + + ++ L G+ + Sbjct: 5 LLLVEDEVAMLETMKLYLEGEGFRVLAVTNGQDALECARREQPALVVLDWML--PGKSGI 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + +R S +I ++ + + G DD + KP RE+ +R+ ++ RR Sbjct: 63 EVCKELRQSSACGIIMVTAKSEETDKIIGLELGADDYITKPFSLRELTSRIRSVLRRTAP 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEV---FPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 A PL E +IL L G ++ Q+ A Sbjct: 123 IQVEAPPLQRGDLLISETQCQVTRNGELIPLTPTEFKILLTLANRPGVVFSRLQLMKAAM 182 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220 D E ++SH+SKLRKKL + + GY Sbjct: 183 D-DDFMNYERTLDSHVSKLRKKLEPDPDHMKYIQTVYGFGYRF 224 >gi|324329208|gb|ADY24468.1| DNA-binding response regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 223 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 42/226 (18%), Positives = 88/226 (38%), Gaps = 12/226 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +++ +G + + DV ++ L Sbjct: 3 ILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEG-PDVLILDVML--PDTDGY 59 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL R+ R +P++ ++ + L G DD V KP ++ E++ RV + RR+K Sbjct: 60 ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRVK 119 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEV-----FPLPRRERRILEYLMANRGKRVAKTQIFS 175 I P+ + L RE + + ++N + + ++ Sbjct: 120 KKEVTVSHEVIEAGEITICPKERKVHVSGQEVQLTYREFNLCQLFVSNPQRVFMRDELLE 179 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G F+ V+ + +LRKKL N + + + +GY +D Sbjct: 180 KVWG-FEYIGNTRAVDIMVQRLRKKLGNSG--EYIKTIYGVGYKLD 222 >gi|229087735|ref|ZP_04219858.1| DNA-binding response regulator [Bacillus cereus Rock3-44] gi|228695570|gb|EEL48432.1| DNA-binding response regulator [Bacillus cereus Rock3-44] Length = 223 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 40/226 (17%), Positives = 85/226 (37%), Gaps = 12/226 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +++ +G + + DV ++ L Sbjct: 3 ILVVDDESSIRNLIRMQLEMEGYEVLTAADGNEALQRWAEE-PDVLILDVML--PDTDGY 59 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAI 115 EL R+ R +P++ ++ + L G DD V KP +H R + Sbjct: 60 ELLRVFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNHAELILRVKNMARRVM 119 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + N G + ++ R V GE L RE + + ++ + + ++ Sbjct: 120 KQGVPKDNKIIRAGELVIYPKERKVHVNGEEIDLTYREFNLCQLFASHPQRVFMRDELLE 179 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G F+ V+ + +LRKKL D + + +GY ++ Sbjct: 180 KVWG-FEYTGNTRAVDIMVQRLRKKLGASG--DSIKTIYGVGYKLE 222 >gi|291287945|ref|YP_003504761.1| two component transcriptional regulator, winged helix family [Denitrovibrio acetiphilus DSM 12809] gi|290885105|gb|ADD68805.1| two component transcriptional regulator, winged helix family [Denitrovibrio acetiphilus DSM 12809] Length = 224 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 46/223 (20%), Positives = 89/223 (39%), Gaps = 5/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + G + + D ++ L L Sbjct: 5 ILIIEDEEQIALLLKDYLSQAGFEAHMHGTGKGALETVEKISPDAVILDIML--PEVDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119 ++ R IR S +P+I ++ L + G DD + KP RE++AR+ A Sbjct: 63 DICRGIRKKSALPIIMLTAKVEEIDRLIGLELGADDYICKPFSPREVVARLKAVLRRTSP 122 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + G + ++ + GE L R E +L + + G +++ + S+++G Sbjct: 123 EKPVQSISIGSLTIYPELYKVSAGGEDIVLTRSEFMLLLTMAKHPGVVYSRSDLISSVHG 182 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 ++ E V+SHI LRKKL + + + + +GY I+ Sbjct: 183 -YEFEGYERTVDSHIKNLRKKLSEFVNDNIIHTIYGVGYKIEV 224 >gi|229829584|ref|ZP_04455653.1| hypothetical protein GCWU000342_01681 [Shuttleworthia satelles DSM 14600] gi|229791573|gb|EEP27687.1| hypothetical protein GCWU000342_01681 [Shuttleworthia satelles DSM 14600] Length = 237 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 49/234 (20%), Positives = 87/234 (37%), Gaps = 16/234 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L DD A +++ + + N L D+ ++ Sbjct: 5 ILLADDEAEIRELLRLYLDHESYRVLEANDGLEALDLLKKEHVDLCVLDVM--MPKMDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 L + IR S +P++ +S + + G DD ++KP + E +AR+ A RR Sbjct: 63 CLLKEIRKKSNMPVLMLSAKDGDSDKILGLNLGADDYLSKPFNPLEAVARINASIRRFYA 122 Query: 121 ------------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 +R+ + E L E RI++ M++ GK Sbjct: 123 LGADIALGSGEDRGKKELRVQDLRLDREACTLYRGEEEIDLTSVEYRIMDLFMSHPGKVF 182 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 K QI+ + + V +N + ISKLR KL + + + R LGY ++ Sbjct: 183 TKQQIYERGW-EEEYIVADNNIMVCISKLRSKLDDGDNNHYIRTIRGLGYRMEK 235 >gi|237738033|ref|ZP_04568514.1| DNA-binding response regulator [Fusobacterium mortiferum ATCC 9817] gi|229419913|gb|EEO34960.1| DNA-binding response regulator [Fusobacterium mortiferum ATCC 9817] Length = 221 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 49/222 (22%), Positives = 99/222 (44%), Gaps = 7/222 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + F +G + E + + D+ ++ L + Sbjct: 5 ILIIEDEKPLAQVLEDTFSQEGFEIIKAFDGENGVDKFYNEKPDLILLDINL--PKKLGW 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IR S +P+I ++ S + G DD + KP + + +L +V + + Sbjct: 63 EVCKEIRETSNIPIIMMTARDSDSDEYNGLSIGADDYITKPFNLKILLLKVKKLLKLDDN 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + E + + GE L RRE + LEY++ N+G ++ + + I+G F Sbjct: 123 NIYKFENFS--FDIKKGEITINGENSELTRREIQFLEYMIKNKGIIFSRDYLLNEIWG-F 179 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 D ++ VV++ + ++RKKL + + + R +GYS D N Sbjct: 180 DFEGDDRVVDTLVKRIRKKLGDYSF--LLKTIRGMGYSFDEN 219 >gi|269957713|ref|YP_003327502.1| winged helix family two component transcriptional regulator [Xylanimonas cellulosilytica DSM 15894] gi|269306394|gb|ACZ31944.1| two component transcriptional regulator, winged helix family [Xylanimonas cellulosilytica DSM 15894] Length = 243 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 52/231 (22%), Positives = 95/231 (41%), Gaps = 15/231 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 V++DD +++ G + L D+ ++ L Sbjct: 9 LVVVDDEPNIRELLSTSLRFAGFEVHAAADGRSALQLVRDLEPDLVVLDVML--PDMDGF 66 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R +R + P++ ++ Q + G DD V KP E++AR+ A+ RR Sbjct: 67 TVTRRMRETGRHTPVVFLTAKDDTQDKVQGLTVGGDDYVTKPFSLEEVVARIRAVLRRTS 126 Query: 121 VSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 S G + + D + G L E ++L YLM N G+ ++K QI Sbjct: 127 GSLPDDDALLRVGDLEMDEDSHEVRRAGIEVDLSPTEFKLLRYLMLNAGRVLSKAQILDH 186 Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-------NKLGFDPVDSKRFLGYSI 220 ++ +D + N+VES+IS LR+K+ ++ + +KR +GY + Sbjct: 187 VW-QYDWGGDANIVESYISYLRRKIDNVTVPGTDEALPALIHTKRGIGYLL 236 >gi|163940441|ref|YP_001645325.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|229011915|ref|ZP_04169095.1| Uncharacterized sensory transduction protein ykoG [Bacillus mycoides DSM 2048] gi|229133482|ref|ZP_04262309.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus BDRD-ST196] gi|163862638|gb|ABY43697.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] gi|228649882|gb|EEL05890.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus BDRD-ST196] gi|228749329|gb|EEL99174.1| Uncharacterized sensory transduction protein ykoG [Bacillus mycoides DSM 2048] Length = 224 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 49/223 (21%), Positives = 93/223 (41%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + D +G ++ D+ ++ L G L Sbjct: 4 ILIIEDEESLADFLELELKYEGYIVDIQLDGRKGLEAALEKNYDLILLDLML--PGLNGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +RA P+I ++ S+ + DSG DD + KP E+LAR+ I+RR + Sbjct: 62 EVCRRLRATKSTPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARMRVIFRREEN 121 Query: 122 SNNRAETGPIRVF----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + + + R E L +E +L M N + + + + + Sbjct: 122 TEQKHASFLSFKDLQLQIESRTITKGNEEIELTNKEFELLLMFMKNINRVLTRDILLDQV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G +D VE N+V+ ++ LR KL + + + + R GY + Sbjct: 182 WG-YDAMVETNIVDVYVRYLRNKLHSVDKEEYIQTVRGAGYIM 223 >gi|325273473|ref|ZP_08139717.1| two component transcriptional regulator [Pseudomonas sp. TJI-51] gi|324101394|gb|EGB98996.1| two component transcriptional regulator [Pseudomonas sp. TJI-51] Length = 231 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 49/223 (21%), Positives = 95/223 (42%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD ++ G + + + + D+ ++ L Sbjct: 7 LLVIDDEPQIRKFLRISLASQGYKVLEAATGAEGLAQAALGKPDLVVLDLGL--PDMDGQ 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R +R S VP++ +S S +D D G +D V KP +E LARV A+ R++ Sbjct: 65 QVLRELREWSSVPVLVLSVRASELQKVDALDGGANDYVTKPFGIQEFLARVRALLRQVPQ 124 Query: 122 ---SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 S +A GP+ V R ++G L R+E +L L + G+ + + Q+ I+ Sbjct: 125 AGGSEVKASFGPLTVDFAFRRVTLEGVEVALTRKEYALLALLAGHPGRVMTQQQLLKDIW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 G + + + + LR+KL + + ++ +GY + Sbjct: 185 GPSHVE-DTHYLRIVVGHLRQKLGDDPTAPRFIITEAGVGYRL 226 >gi|300818609|ref|ZP_07098817.1| transcriptional activator protein Irlr [Escherichia coli MS 107-1] gi|300528781|gb|EFK49843.1| transcriptional activator protein Irlr [Escherichia coli MS 107-1] Length = 260 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 50/219 (22%), Positives = 97/219 (44%), Gaps = 3/219 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D ++ + G ++ + +L + ++ L G Sbjct: 40 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIML--PGMDGW 97 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + +R Q P+I ++ S+ + DSG +D + KP E+LARV A R+ Sbjct: 98 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 157 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 N+ E +R+ S + L R+E ++L L + G+ + +T I S I+G+ Sbjct: 158 LNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 216 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + N V+ I +LR K+ + + + R +GYS Sbjct: 217 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 255 >gi|312114151|ref|YP_004011747.1| two component transcriptional regulator, winged helix family [Rhodomicrobium vannielii ATCC 17100] gi|311219280|gb|ADP70648.1| two component transcriptional regulator, winged helix family [Rhodomicrobium vannielii ATCC 17100] Length = 244 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 41/228 (17%), Positives = 85/228 (37%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ D+G+ + + R D+ ++ GE L Sbjct: 7 ILVVDDDRRIRTSLKRFLTDNGMRVTEVADGVAMFAAVEAGRFDLIVLDVM--MPGEDGL 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R +R S++P++ ++ + + G DD V KP RE+LAR+ A+ RR Sbjct: 65 SLCRRLRGTSKIPVVLLTAMSGETDRIIGLEIGADDYVCKPFSPRELLARIRAVLRRTGD 124 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEV--------FPLPRRERRILEYLMANRGKRVAKTQI 173 + + + + +V L E +L + + + Q+ Sbjct: 125 AASETRVAGLTYVFENWRLDVVRRTLRNPEGALVDLTAGEHDLLLAFLERPQHVLTRDQL 184 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 G + ++ +S+LR+K+ + + + R GY Sbjct: 185 LDLARGRVASPFD-RSIDVQVSRLRRKIEADPQTPELIKTVRSGGYIF 231 >gi|226312547|ref|YP_002772441.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226095495|dbj|BAH43937.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 224 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 50/223 (22%), Positives = 93/223 (41%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D+ ++++ D+G + L + ++ L Sbjct: 5 ILIVEDQQVLREIMKEYLMDEGYEVLEAGDGSQALTLFQEHEVHLIILDVML--PELDGW 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119 + R IR S VP++ ++ TL F+ G DD V KP +LAR R++ Sbjct: 63 SVCRRIRKVSNVPILMLTARSDEDDTLLGFELGADDYVVKPCSPPILLARSKRLLENRQM 122 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + G I + R ++G+ + L E IL YLM N+G +++ Q+ I+G Sbjct: 123 HEPGDMLSGGGITIHLPSRTVSIEGKNYSLTHTEYEILAYLMKNKGIILSREQLIIKIWG 182 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D E+ + SH+ LR KL + + + GY + Sbjct: 183 -YDFIGEDRTLSSHVRNLRSKLGDH--AKHIVTVVRSGYKFEE 222 >gi|225010136|ref|ZP_03700608.1| two component transcriptional regulator, winged helix family [Flavobacteria bacterium MS024-3C] gi|225005615|gb|EEG43565.1| two component transcriptional regulator, winged helix family [Flavobacteria bacterium MS024-3C] Length = 230 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 37/228 (16%), Positives = 82/228 (35%), Gaps = 16/228 (7%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L+DD + + +G + ++ + + ++ + Sbjct: 8 ILLVDDEPDILEIVSYNLSAEGYQVYTASNGVEGVAKAKKKQPHLIILDVM--MPEMDGI 65 Query: 62 ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILA------RV 112 E IRA + ++ + + FD+G DD + KPI + +++ R Sbjct: 66 EACEKIRATPGLENTIVAFLTARGEDYSQVAGFDAGADDYITKPIKPKVLVSKVKALLRR 125 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + G + + + +G LPR+E +L L + K + Sbjct: 126 FKEGAVTAEAEDITSVGDLIINREEYKIVHKGIEMVLPRKEFELLALLASKPNKVFKREV 185 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I ++G + V ++ HI KLR+K+ + + + +GY Sbjct: 186 ILDKVWGN-EVVVGGRTIDVHIRKLREKIGDNN----FKTVKGVGYKF 228 >gi|147676370|ref|YP_001210585.1| response regulator [Pelotomaculum thermopropionicum SI] gi|146272467|dbj|BAF58216.1| response regulator [Pelotomaculum thermopropionicum SI] Length = 227 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 50/220 (22%), Positives = 98/220 (44%), Gaps = 5/220 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L+DD + ++G ++ L + V ++ G E Sbjct: 10 LLVDDEPNILQFLELGLQNEGFEVQTAQDGFTAINLMKQFQPHVVILDVM--MPGMDGFE 67 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-AIYRRLKV 121 + R+++ V +I ++ + + + G DD + KP E+LAR+ + + Sbjct: 68 VCRMLKKMENVAVIMLTARDEVDDRVKGLNIGADDYMVKPFSFEELLARIHARVRNQFPN 127 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 GP ++ ++ + +G V L E +L+YL+ N G ++K I ++G + Sbjct: 128 LFGEVAIGPFQIDDRRKEIKFEGRVLELSPTEYELLKYLVLNHGLVLSKRMILDKVWG-Y 186 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D A EEN+VE ++ LR+KL++K + + R GY +D Sbjct: 187 DFAGEENIVEVYVRSLREKLKDK-DHQIIRTLRGAGYRVD 225 >gi|163941207|ref|YP_001646091.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163863404|gb|ABY44463.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] Length = 225 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 53/225 (23%), Positives = 97/225 (43%), Gaps = 10/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L++D +++ F ++G + + L + D+ ++ L Sbjct: 6 LLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELFAEHEIDLIMLDIML--PEIDGWS 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120 + R IR S VP+I ++ TL F+ G D+ V KP + ++AR + +R Sbjct: 64 VCRRIRKESAVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGA 123 Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 N I V R V GE L +E +L YLM N+G +++ + + Sbjct: 124 VGVSEENTMSLAGIEVNRLSRTVLVDGEEIILTHKEFELLVYLMENKGIVLSRQHLLDQL 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +G +D ++ V++HI KLR KL +K + + +GY + Sbjct: 184 WG-YDYYGDDRTVDTHIKKLRNKLGDK--ARHIGTVIRVGYKFEE 225 >gi|83649045|ref|YP_437480.1| response regulator [Hahella chejuensis KCTC 2396] gi|83637088|gb|ABC33055.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Hahella chejuensis KCTC 2396] Length = 228 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 55/223 (24%), Positives = 103/223 (46%), Gaps = 5/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D AL++ G +++ E +L D++ ++ L L Sbjct: 3 ILLVEDEALLRGQLRDELVKHGYAVDTAEDGEVAAYLGKENPYDLAVVDLGL--PKRTGL 60 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119 E+ + R + P++ ++ Q + ++G DD + KP H E++AR+ A+ R Sbjct: 61 EVIQEWRGMGKEFPILILTARGHWQDKVSGLEAGADDYLVKPFHVAELMARLGALLRRSS 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S+ + GP+ + + + ++ G L E LEYL+ G+ V+KT++ +Y Sbjct: 121 GFSSPVIQAGPMTLDTRAKLVQIDGSALELTAYEYNTLEYLVHRAGQAVSKTELTEHLY- 179 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 D + NV+E I +LRKKL P+ + R GY +W Sbjct: 180 AQDFDRDSNVIEVFIGRLRKKLDPDGVNKPITTLRGQGYRFNW 222 >gi|260102098|ref|ZP_05752335.1| DNA-binding response regulator [Lactobacillus helveticus DSM 20075] gi|260084098|gb|EEW68218.1| DNA-binding response regulator [Lactobacillus helveticus DSM 20075] Length = 238 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 45/229 (19%), Positives = 90/229 (39%), Gaps = 15/229 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G ++ E D+ ++ L + L Sbjct: 5 ILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVDEYDPDLMILDLML--PKKDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R +P+I ++ + + + G DD V KP +RE++ARV A RR + Sbjct: 63 EVAREVRQTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRDI 122 Query: 122 SNNRAETGPIRVFSD-----------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + E G L RE +L YL + G+ + + Sbjct: 123 VKKAEADNQDDTDKNIKIGNLVIMPDAYIVEKDGRKIELTHREFELLYYLAQHMGQVMTR 182 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGY 218 + ++G +D + V+ + +LR+K+ + + ++R +GY Sbjct: 183 EHLLQTVWG-YDYFGDVRTVDVTVHRLREKIEDNPIQPQVLVTRRGVGY 230 >gi|229829750|ref|ZP_04455819.1| hypothetical protein GCWU000342_01847 [Shuttleworthia satelles DSM 14600] gi|229791739|gb|EEP27853.1| hypothetical protein GCWU000342_01847 [Shuttleworthia satelles DSM 14600] Length = 218 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 43/220 (19%), Positives = 97/220 (44%), Gaps = 6/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++++G + G + S D+ ++ + L Sbjct: 3 ILVVEDDQMIREGVCEYLSESGYEMVEAGDGREALARFYSDDIDLVILDIQI--PHINGL 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + IR S++P++ ++ + + ++ F S D + KP + AR+ ++ R Sbjct: 61 DVLKEIRRKSRLPVLILTAFSDEEYKIEAFTSLADGYIEKPFSLPVLKARIDSLIERHFG 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 +R V V GE + +E IL++L+ + G + + QI ++ Sbjct: 121 LTDRFAYKGTEVNFSSYSARVDGEKVDVNAKEVEILKFLLEHEGCALTRAQILDGVWKET 180 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +E + V++ +I +LRKKL G D + + R +GY ++ Sbjct: 181 EEIPFDRVIDVYIKELRKKL----GLDCIITVRNVGYKLE 216 >gi|29831310|ref|NP_825944.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29608425|dbj|BAC72479.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 245 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 43/230 (18%), Positives = 83/230 (36%), Gaps = 15/230 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L +D ++ +G ++ DV ++ G L+ Sbjct: 16 LLAEDDRAIRHALERALTLEGYAVTAVADGVEALAQAHRTPPDVLLLDVM--MPGIDGLQ 73 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-------- 113 + R++RA P++ ++ + D+G DD V KP E+ AR+ Sbjct: 74 VCRVLRAEGDRTPILMLTALVETADRIAGLDAGADDYVVKPFDVEEVFARLRALLRRTGN 133 Query: 114 ---AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + + + +R+ R L R E +LE L+ N G + Sbjct: 134 ASLDAPKEEPSPSGQVSVAGLRMDVQARRAWRGEREVELTRTEFDLLELLVRNAGIVLDH 193 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 T I+ I+G +D + ++ LR+KL + + R +GY + Sbjct: 194 TTIYDRIWG-YDFGPGSKNLAVYVGYLRRKLDQPGAPALIHTVRGVGYVL 242 >gi|293572383|ref|ZP_06683365.1| regulatory protein VanR [Enterococcus faecium E980] gi|291607543|gb|EFF36883.1| regulatory protein VanR [Enterococcus faecium E980] Length = 229 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 42/227 (18%), Positives = 91/227 (40%), Gaps = 9/227 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD + + ++G + + D+ + ++ + Sbjct: 3 ILIADDDKEIVELLSIYVHNEGYEAVKAYDGKEALSKIRTI-PDIDLLILDIMMPEMDGM 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + +R SQ+P+I ++ + + +G DD V KP + E++ARV ++ RR K+ Sbjct: 62 QVVKELRKESQIPIIMLTAKTTDMDKIKGLVAGADDYVTKPFNPLEVMARVKSLLRRTKM 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQG------EVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + V + + + + L E IL L ++ + + +IF Sbjct: 122 QIAPDQPDVLEVNALIINKDSHEVKTIDGKEIQLTALEFGILYLLASHPNRVFSADEIFE 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221 ++ + V V H+S LR K+ G + + +GY ID Sbjct: 182 RVW-KQESIVSAKTVMVHVSHLRDKIEEATGGEKVIQTVWGVGYKID 227 >gi|171058342|ref|YP_001790691.1| two component transcriptional regulator [Leptothrix cholodnii SP-6] gi|170775787|gb|ACB33926.1| two component transcriptional regulator, winged helix family [Leptothrix cholodnii SP-6] Length = 245 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 88/224 (39%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G S A D+ ++ L GE + Sbjct: 4 ILVVEDEPAIAELISMNLRHAGYDPHTVGSAGEAHEAVRDALPDLVILDWML--PGESGV 61 Query: 62 ELPRIIRAHSQVP---LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIY 116 L R RA ++ +I ++ S Q + D+G DD ++KP E+ R Sbjct: 62 SLARRWRADARTRELSIIMLTARSSEQDMVQGLDAGADDYLSKPFSTAELLARIRAVLRR 121 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + E GP+R+ Q + L E R+L +LM + ++ Q+ Sbjct: 122 KLPEALEAAVEVGPLRLDPAAHRVFHQHDEVTLGPTEFRLLRFLMTYPERVHSRGQLLDR 181 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G +EE V+ HI +LR L + +++ R GY + Sbjct: 182 VWGDH-VFIEERTVDVHIKRLRGVLAPYGCAELIETVRGAGYRL 224 >gi|187779154|ref|ZP_02995627.1| hypothetical protein CLOSPO_02749 [Clostridium sporogenes ATCC 15579] gi|187772779|gb|EDU36581.1| hypothetical protein CLOSPO_02749 [Clostridium sporogenes ATCC 15579] Length = 230 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 42/222 (18%), Positives = 89/222 (40%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G +E + + D+ ++ L + Sbjct: 9 ILIVEDEVKISRFLQLELQYEGYEIEQAYDGREGLDKALNEKYDLILLDIML--PKLNGM 66 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118 E+ R IR S +P+I ++ + D+G DD + KP E + + Sbjct: 67 EVCRRIRQISDIPIIMLTAKDETTDIVMGLDTGADDYITKPFAIEELLARIRVALKRKKL 126 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 +N + + D ++ L + E +L++ M N+ + + QI + ++ Sbjct: 127 EIEHSNTISIKGLELDLDKHIVSYNQQIIDLTKTEFDLLKFFMENKNIALNRDQILNKVW 186 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G FD + NVV+ ++ LR K+ NK + + R +GY + Sbjct: 187 G-FDYLGDTNVVDVYVRYLRTKIDNKYNERFIYTIRGVGYLL 227 >gi|310829931|ref|YP_003962288.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium limosum KIST612] gi|308741665|gb|ADO39325.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium limosum KIST612] Length = 230 Score = 140 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 41/228 (17%), Positives = 84/228 (36%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + + + + + D+ ++ L G Sbjct: 4 ILIIEDDRKIAELERDYLEINDFQVALAADGDTGLLFAVRDDFDLIVLDLML--PGVDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R IR + P+I +S + G DD + KP E++ARV A R + Sbjct: 62 AICRRIREKKETPIIMVSAKRDDVDKIRGLGLGADDYMVKPFSPAELVARVKAHIGRFER 121 Query: 122 SNNRAETGPIR--------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 ++ + + D R ++G L +E +L ++ N K + Sbjct: 122 LTSQEKRKQHHIIEINGLRIDKDARRVYLRGAETALANKEFDLLLFMAENPNIVFNKETL 181 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 F ++GL D + V H+++LR+K+ + +++ GY Sbjct: 182 FERVWGL-DAVGDTTTVTVHVNRLREKIETDNREPRYIETVWGAGYRF 228 >gi|298246096|ref|ZP_06969902.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297553577|gb|EFH87442.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 234 Score = 140 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 45/220 (20%), Positives = 94/220 (42%), Gaps = 5/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L+DD + + F +G ++ + + D+ ++ L G + Sbjct: 14 ILLVDDERQIIEFLRMGFEYEGFTVHVSMTGHEALQAVERHKPDIVILDLML--PGLDGM 71 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 + + I +I ++ ++ + + G DD V KP +E+LARV A+ RR Sbjct: 72 AVAQQIHGAYNTAIIMLTAREEVEDRVTGLELGADDYVTKPFAFKELLARVRAVLRRRGL 131 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 N I + R L RE +LE +++ + + + I + I+G Sbjct: 132 QLGNVLVFQDITLNRTTRVVRRGAREIELTPREFELLELFLSHPRQVLTRNAILARIWG- 190 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ ++NV+E ++ LR+KL++ + + R +GY + Sbjct: 191 YNYVGDDNVIEVYVKHLREKLQDLP-PQLLQTVRGVGYVL 229 >gi|295426129|ref|ZP_06818796.1| response regulator [Lactobacillus amylolyticus DSM 11664] gi|295064165|gb|EFG55106.1| response regulator [Lactobacillus amylolyticus DSM 11664] Length = 228 Score = 140 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 41/227 (18%), Positives = 90/227 (39%), Gaps = 9/227 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + ++G S + + D++ + ++ + Sbjct: 3 ILVVDDDKEIVELLSIYLKNEGYEPIAAYSGKEAITKLITT-PDIALMILDIMMPNMSGI 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------AI 115 E+ + +R S +P+I +S S + +G DD V+KP + E++ARV Sbjct: 62 EVIKEVRKDSDIPIIVVSAKTSDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRRSQK 121 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + + + + G+ L E IL L ++ + + +IF Sbjct: 122 QVKDEKPDVLEVGPLVINRDSHEVKTIDGKAIQLTALEFGILYLLASHPNRVFSADEIFE 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221 ++ + V V H+S LR K++ G D + + +GY ++ Sbjct: 182 RVW-QQESIVSAKTVMVHVSHLRDKIQKATGGEDVIQTVWGVGYKVE 227 >gi|262199161|ref|YP_003270370.1| transcriptional regulator [Haliangium ochraceum DSM 14365] gi|262082508|gb|ACY18477.1| two component transcriptional regulator, winged helix family [Haliangium ochraceum DSM 14365] Length = 243 Score = 140 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 46/224 (20%), Positives = 90/224 (40%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEE-WLQSSAREDVSAIEAFLIG-KGEK 59 +L++D A + +G + L D ++ L G + Sbjct: 13 ILLVEDEADLAAAIEYNLQREGYRTRVAHDGRTALEELAREPAPDAILLDLMLPDISGTE 72 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIY 116 + + R VP+I ++ + + F+ G DD V KP RE++ R+ Sbjct: 73 ICKHLREQERTRDVPVIMVTAKGAEIDRVVGFEVGADDYVVKPFSVRELMLRIRALLRRT 132 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 R + + +RV +G V + L E R+L ++ RG+ + + S Sbjct: 133 ERPADNPDMITFDRLRVDREGHRVWVDEQEISLTALEFRLLYAFISRRGRVQTRDALLSD 192 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G+ + V V++H+ +LR+KL + V++ R +GY Sbjct: 193 VWGI-EADVTTRTVDTHVKRLREKLGDAG--RYVETLRGVGYRF 233 >gi|218233709|ref|YP_002367381.1| DNA-binding response regulator [Bacillus cereus B4264] gi|229073107|ref|ZP_04206291.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus F65185] gi|229079836|ref|ZP_04212368.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus Rock4-2] gi|218161666|gb|ACK61658.1| DNA-binding response regulator [Bacillus cereus B4264] gi|228703420|gb|EEL55874.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus Rock4-2] gi|228710015|gb|EEL62005.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus F65185] Length = 224 Score = 140 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 50/223 (22%), Positives = 93/223 (41%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + D +G ++ D+ ++ L G L Sbjct: 4 ILIIEDEESLADFLELELKYEGYKVDIQLDGRKGLSAALEKNYDLILLDLML--PGLNGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +RA P+I ++ S+ + DSG DD + KP E+LAR+ I+RR + Sbjct: 62 EVCRRLRATKNTPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARMRVIFRREEH 121 Query: 122 SNNRAETGPIRVF----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 N+ + + R E L +E +L M N + + + + + Sbjct: 122 IENKQVSFLTFKDLQLQIESRTITKGNEEIELTNKEFELLLMFMKNINRVLTRDVLLDQV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G +D VE N+V+ ++ LR KL + + + + R GY + Sbjct: 182 WG-YDAIVETNIVDVYVRYLRNKLHSVDKEEYIQTVRGAGYIM 223 >gi|160946207|ref|ZP_02093418.1| hypothetical protein PEPMIC_00169 [Parvimonas micra ATCC 33270] gi|158447730|gb|EDP24725.1| hypothetical protein PEPMIC_00169 [Parvimonas micra ATCC 33270] Length = 218 Score = 140 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 45/220 (20%), Positives = 98/220 (44%), Gaps = 6/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D +++G + G + + L + D++ + + L Sbjct: 3 ILVVEDDQFIREGISEYLSEFGYEIIQAKDGQEA--LINFNNNDINLVILDIQIPFLNGL 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IR S++P++ ++ + + ++ F S D + KP + R+ ++ +R Sbjct: 61 EVLKEIRKKSKLPVLMLTAFNDEEYKINAFSSLADGYMEKPFSLPVLKVRIDSLIKRHYS 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + E V + GE + +E IL+YL+ N G + + QI ++ Sbjct: 121 GQEKFEYKDAEVNFTSYTAKYNGEDVDINAKELEILKYLLENEGHALTRAQIIDNVWKET 180 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 DE + V++ +I +LRKKL G D + + R +GY ++ Sbjct: 181 DEIPFDRVIDVYIKELRKKL----GLDCIVTIRNVGYKLE 216 >gi|160892844|ref|ZP_02073633.1| hypothetical protein CLOL250_00374 [Clostridium sp. L2-50] gi|156865403|gb|EDO58834.1| hypothetical protein CLOL250_00374 [Clostridium sp. L2-50] Length = 222 Score = 140 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 44/222 (19%), Positives = 97/222 (43%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G +++ + +A D ++ + + + Sbjct: 3 ILVVEDELDLNHIICNKLTKEGYNVDACFDGQAALDYLETASYDGVIMDIMI--PKKDGM 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119 + + IRA P++ ++ Q + D+G D + KP E+LAR+ + Sbjct: 61 SVLKTIRAEGIQVPVLFLTAKSETQDIVRGLDAGASDYMTKPFEFSELLARLRVMLRTVH 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +++ G +++ ++ G L RE ILEYL+ N+ V + QI + I+ Sbjct: 121 ISNDSILNYGSLQIDTNNHRVVRDGVTVDLTVREYAILEYLVRNKNIVVTREQIRANIWS 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + D + NVV+ +I LR+K+ + + + R +GY ++ Sbjct: 181 IDD-DINSNVVDVYIRYLRRKIDDPFEEKLIHTIRGVGYRLE 221 >gi|89096819|ref|ZP_01169710.1| two-component response regulator [Bacillus sp. NRRL B-14911] gi|89088199|gb|EAR67309.1| two-component response regulator [Bacillus sp. NRRL B-14911] Length = 236 Score = 140 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 49/228 (21%), Positives = 96/228 (42%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +L+DD + + +G S + + E S D+ ++ L G+ Sbjct: 6 ILLVDDEKSIVKLMETVLRKEGFSSIHTAYTAEEALECVSRHPIDIVVLDVML--PGQSG 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ IR S ++ ++ S L F G DD + KP + EI AR+ A RR + Sbjct: 64 FDICPKIREISDAYILFLTARVSDLDVLTGFAIGGDDYITKPFNPLEIAARIKARLRRNQ 123 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEV-------FPLPRRERRILEYLMANRGKRVAKTQI 173 + + + + + P + +L+YL + ++KTQ+ Sbjct: 124 APSPALKEAGRKHDFGRFILDEEAGDLIVEGKAVQTPAQVFLLLQYLCQHPNTVISKTQM 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 A++G FD V++N V HI ++R+++ + + + + R LGY + Sbjct: 184 LEAVWG-FDSFVDDNTVTVHIRRIRERIEKDPSHPELLVTVRGLGYKL 230 >gi|326319003|ref|YP_004236675.1| winged helix family two component transcriptional regulator [Acidovorax avenae subsp. avenae ATCC 19860] gi|323375839|gb|ADX48108.1| two component transcriptional regulator, winged helix family [Acidovorax avenae subsp. avenae ATCC 19860] Length = 248 Score = 140 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 47/230 (20%), Positives = 86/230 (37%), Gaps = 16/230 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + A DG+ + L + D+ ++ L G L+ Sbjct: 15 LVVEDEPGIATILSAYLQRDGLRAHQAHDGLEALRLFRQLKPDMVLLDIHL--PGMDGLD 72 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE------------ILA 110 L R IR Q P+I ++ L G DD V KP E Sbjct: 73 LLRAIREDGQTPVIMVTALADDVDKLVGLRLGADDYVVKPFSPPEVVARVRAVLRRVQAQ 132 Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 A ++ R E + + + PL E R+L L A + ++ Sbjct: 133 PSAPARAAQRIRVGRIEIDQEAHAAFAHGDDGRAVPLPLTLTEYRLLACLAAQPRRCFSR 192 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + L + + V++SH+SKLR+KL+ + +++ R +GY + Sbjct: 193 SHLIEHC--LPESDALDRVIDSHLSKLRRKLQQAGQGELIETVRGIGYRL 240 >gi|254420558|ref|ZP_05034282.1| response regulator receiver domain protein [Brevundimonas sp. BAL3] gi|196186735|gb|EDX81711.1| response regulator receiver domain protein [Brevundimonas sp. BAL3] Length = 226 Score = 140 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 56/220 (25%), Positives = 104/220 (47%), Gaps = 9/220 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L++D A + D G +++ E +L + DV ++ L + Sbjct: 4 LLVEDDADLSRQLKGALADAGYAVDHAADGEEAWFLGDTEPYDVIVLDLGL--PKIDGVS 61 Query: 63 LP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 + R R P++ ++ + + FD+G DD + KP H E+LAR+ A+ RR Sbjct: 62 VLERWRREGKATPVLILTARGAWSDKVSGFDAGADDYLTKPFHTEELLARLRALLRRSAG 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 +++ G +R+ V GE L E R+L Y+M ++G+ +++T++ +Y Sbjct: 122 IASATLSCGGLRLDPRAARANVNGEPLRLTSLEYRLLHYMMMHQGRVISRTELVEHLYDQ 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D + N +E I +LRKK+ G D +++ R LGY + Sbjct: 182 -DFDRDSNTIEVFIGRLRKKI----GSDRIETVRGLGYRL 216 >gi|30250065|ref|NP_842135.1| response regulator PhoB [Nitrosomonas europaea ATCC 19718] gi|30139172|emb|CAD86042.1| possible phoB; Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding [Nitrosomonas europaea ATCC 19718] Length = 240 Score = 140 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 50/228 (21%), Positives = 94/228 (41%), Gaps = 11/228 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVL 61 ++++D + +++ + G + NS E + + D+ ++ L G G ++ Sbjct: 6 LVVEDESAIQELIAYNLRNAGYTAVCTNSAEQAAAMVNEVLPDLVLLDWMLPGKSGIELA 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 R +P+I ++ + + ++G DD V KP RE++AR+ A+ RR Sbjct: 66 RSLRRDPRTKPIPVIMLTARVDERDKVIGLETGADDYVTKPFSPRELIARIKAVLRRSLP 125 Query: 122 SN---------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + RV + + L E R+L +LMA+ + + Q Sbjct: 126 EASDEILDIGGVQINPMTHRVTVTDLNDGTHEKELLLSPTEYRLLYFLMAHAERVHTRAQ 185 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + ++G VE+ V+ HI +LRK L D V + R GY Sbjct: 186 LLDRVWGDH-VFVEDRTVDVHIRRLRKALDVAGKADLVQTVRGAGYRF 232 >gi|324327498|gb|ADY22758.1| DNA-binding response regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 225 Score = 140 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 53/225 (23%), Positives = 97/225 (43%), Gaps = 10/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L++D +++ F ++G + + L + D+ ++ L Sbjct: 6 LLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELFAEHEIDLIMLDIML--PEIDGWS 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120 + R IR S VP+I ++ TL F+ G D+ V KP + ++AR + +R Sbjct: 64 VCRRIRKESAVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGV 123 Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 N I V R V GE L +E +L YLM N+G +++ + + Sbjct: 124 VGVAEENTMSLAGIEVNRLSRTVLVDGEEIILTHKEFELLVYLMENKGIVLSRQHLLDQL 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +G +D ++ V++HI KLR KL +K + + +GY + Sbjct: 184 WG-YDYYGDDRTVDTHIKKLRNKLGDK--AKHIGTVIRVGYKFEE 225 >gi|241895290|ref|ZP_04782586.1| response regulator [Weissella paramesenteroides ATCC 33313] gi|241871596|gb|EER75347.1| response regulator [Weissella paramesenteroides ATCC 33313] Length = 229 Score = 140 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 88/228 (38%), Gaps = 9/228 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + ++G + + + D+ I ++ Sbjct: 3 ILIVDDDHEIAELLEIYVKNEGYEPVIASDGKEALTKIRTN-PDIGLIILDIMMPEMSGT 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + +R + VP++ +S + +G DD V KP + E++ARV A+ RR + Sbjct: 62 EVLKEVRKDNPVPILLLSAKSGAMDKIQGLITGADDYVTKPFNPLEVMARVRALLRRAQN 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEV------FPLPRRERRILEYLMANRGKRVAKTQIFS 175 +A + V + + L E IL L ++ + + IF Sbjct: 122 GLAQATPEVLDVGPLTINKDSHEVRTADGVDINLTALEFGILYLLASHPNRVFSADDIFE 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222 ++ + V V H+S LR KL + G V + +GY I+ Sbjct: 182 RVW-QQESVVSAKTVMVHVSHLRDKLEDATGGNQVVQTVWGVGYKIEV 228 >gi|228940293|ref|ZP_04102864.1| Two-component response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228973209|ref|ZP_04133798.1| Two-component response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228786405|gb|EEM34395.1| Two-component response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228819419|gb|EEM65473.1| Two-component response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 233 Score = 140 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 51/227 (22%), Positives = 93/227 (40%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ ++G+ + L D+ ++ + Sbjct: 10 ILIVDDDKEIRNLISVYLENEGLKTQKAEDAIQALQLLEEKDFDLIILDIM--MPNMDGI 67 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E IR +P+I +S + SG DD ++KP + E++ARV + RR K Sbjct: 68 EACMKIREDRNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 127 Query: 122 SNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N E V +D R V+G+ L +E ILE L N+G ++ +I+ Sbjct: 128 YNTSIEHNKSILEIGDLTVNTDTRQVWVRGKETRLTPKEFAILELLARNKGVVLSVAKIY 187 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220 A++ +N V HI+K+R K+ + + +GY I Sbjct: 188 EAVWKEV-FYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGYKI 233 >gi|89094516|ref|ZP_01167455.1| DNA-binding response regulator [Oceanospirillum sp. MED92] gi|89081252|gb|EAR60485.1| DNA-binding response regulator [Oceanospirillum sp. MED92] Length = 230 Score = 140 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 51/229 (22%), Positives = 94/229 (41%), Gaps = 12/229 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++ +D ++ G L D+G ++ + L + + D+ ++ G Sbjct: 4 LIAEDDLNIRLGLSDLLEDEGYECLQASNGDEAYSLFAMHQPDLVLLDIM--MPGMDGYA 61 Query: 63 LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 + R IR + QVP+I I+ + + G DD + KP RE++AR+ A+ RR Sbjct: 62 VCRKIRQLNEQVPVIFITAKSEEIDQVLGLELGADDYIKKPFGTREVIARINAVIRRCNK 121 Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 ++ N+ + V L R+ +IL+ L GK V + +F Sbjct: 122 ALPAEQIENDHFTMDDLTVLPLQLRAHRDQTKIELSLRDIKILQLLYREAGKVVDRDMLF 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 + +G D ++ HISKLRK + + + + +GY D Sbjct: 182 NECWGR-DYLPSSRTLDQHISKLRKLIEIDPRQPRIIKTAHGVGYRFDK 229 >gi|115359931|ref|YP_777069.1| two component heavy metal response transcriptional regulator [Burkholderia ambifaria AMMD] gi|115285219|gb|ABI90735.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia ambifaria AMMD] Length = 223 Score = 140 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 42/221 (19%), Positives = 94/221 (42%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + +++ + + +L D+ ++ L Sbjct: 3 ILIVEDEPKMASYLRKGLAEASYTVDVAENGKDGLFLALHEDFDLVVLDVML--PELDGF 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +RA Q P++ ++ +++ + + G DD + KP + E LAR+ ++ RR Sbjct: 61 EVLRRLRAQKQTPVLLLTARDAIEDKVTGLELGADDYLLKPFAYAEFLARIRSLLRRAPR 120 Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + R L +E +L+ L G+ + +T I S I+ + Sbjct: 121 NARDLLQVADLEIDLIKRRVRRADNRIDLTAQEFALLQLLAEREGEVLTRTFITSQIWDM 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + NVV++ I +LR K+ N + + R +GY ++ Sbjct: 181 -NFDSDTNVVDAAIKRLRAKIDNAYEKKLIHTIRGMGYVLE 220 >gi|315039139|ref|YP_004032707.1| two-component response regulator [Lactobacillus amylovorus GRL 1112] gi|325957610|ref|YP_004293022.1| two-component response regulator [Lactobacillus acidophilus 30SC] gi|312277272|gb|ADQ59912.1| two-component response regulator [Lactobacillus amylovorus GRL 1112] gi|325334175|gb|ADZ08083.1| two-component response regulator [Lactobacillus acidophilus 30SC] gi|327184255|gb|AEA32702.1| two-component response regulator [Lactobacillus amylovorus GRL 1118] Length = 228 Score = 140 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 40/227 (17%), Positives = 90/227 (39%), Gaps = 9/227 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + ++G S + ++ D++ + ++ + Sbjct: 3 ILVVDDDKEIVELLSIYLKNEGYEPIAAYSGKEAITKLTTT-PDIALMILDVMMPNMSGI 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------AI 115 E+ + +R S +P+I +S + +G DD V+KP + E++ARV Sbjct: 62 EVIKEVRKDSDIPIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRRSQK 121 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + + + + G+ L E IL L ++ + + +IF Sbjct: 122 QVKDEKPDILEVGPLVINRDSHEVKTIDGKAIQLTALEFGILYLLASHPNRVFSADEIFE 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221 ++ + V V H+S LR K++ G D + + +GY ++ Sbjct: 182 RVW-QQESIVSAKTVMVHVSHLRDKIQKATGGEDVIQTVWGVGYKVE 227 >gi|291562260|emb|CBL41076.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [butyrate-producing bacterium SS3/4] Length = 234 Score = 140 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 41/227 (18%), Positives = 89/227 (39%), Gaps = 9/227 (3%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + + DD + +G +E F E D+ ++ G Sbjct: 4 LIYVADDEKNICFLIENFLEKEGYEVECFGDGESLLDAFQKKAPDLCILDIM--MPGMDG 61 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARVA 113 L + IR S VP+I +S S + G DD + KP + + RV Sbjct: 62 LTVCTQIRKTSHVPIIIVSAKDSPLDRITGITLGSDDYMVKPFLPLELVTRVKALFRRVD 121 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + + + E G I+++ R +++ E F L E L +++ + ++ + Sbjct: 122 TFSGQEEEAKDSYEIGDIKLYPKRRAAKLKDEDFALTPLEFDFLCHMLERQEHAASRDDL 181 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +++ + V+ V+ + +LRKKL+++ +++ G+ + Sbjct: 182 LKSLWKVDSREVDTRAVDDMVKRLRKKLKDQKSTVKIETVWGYGFRL 228 >gi|285017381|ref|YP_003375092.1| two-component system regulatory protein phob [Xanthomonas albilineans GPE PC73] gi|283472599|emb|CBA15104.1| probable two-component system regulatory protein phob [Xanthomonas albilineans] Length = 229 Score = 140 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 83/224 (37%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++D + L + D+ ++ L G L Sbjct: 5 ILIVDDEPAIRDMVAFALRKGDFEPVHAGDAREAQSLIADRVPDLILLDWML--PGTSGL 62 Query: 62 ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIY 116 EL R R + P+I ++ + ++GVDD V KP RE+ R Sbjct: 63 ELARRWRKDAMTREVPIIMLTARGEENDRVGGLEAGVDDYVVKPFSARELLARIRAVMRR 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 R + G +R+ P+ E R+L + M + + ++ Q+ Sbjct: 123 TREDDEDGSVSVGNLRIDGAAHRVFAGDAPVPIGPTEYRLLHFFMTHPERVYSRAQLLDH 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G VEE ++ HI +LRK L + V + R GY Sbjct: 183 VWGGSVY-VEERTIDVHIRRLRKTLEPFAVENMVQTVRGSGYRF 225 >gi|259909297|ref|YP_002649653.1| Response regulator in two-component regulatory system with PhoR [Erwinia pyrifoliae Ep1/96] gi|224964919|emb|CAX56442.1| Response regulator in two-component regulatory system with PhoR [Erwinia pyrifoliae Ep1/96] gi|283479352|emb|CAY75268.1| Phosphate regulon transcriptional regulatory protein phoB [Erwinia pyrifoliae DSM 12163] Length = 229 Score = 140 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 38/222 (17%), Positives = 91/222 (40%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D A +++ + + + L D+ ++ L G G + Sbjct: 5 ILVVEDEAPIREMLCFVLEQNDYQPIEAADYDRAVNLLIEPWPDLILLDWMLPGGSGIQF 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ + +P++ ++ + + ++G DD + KP +E++AR+ A+ RR+ Sbjct: 65 IKHLKREAMTRDIPVVMLTARGEEEDRVRGLEAGADDYITKPFSPKELVARIKAVMRRIS 124 Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 E + + + + E ++L + M + + ++ Q+ + ++ Sbjct: 125 PMAVEEVIEMQGLTLDPSSHRVMSGNQPLDMGPTEYKLLHFFMTHTERVYSREQLLNHVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G + VE+ V+ HI +LRK L V + R GY Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALELNGHDRMVQTVRGTGYRF 225 >gi|297202432|ref|ZP_06919829.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] gi|197710046|gb|EDY54080.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] Length = 219 Score = 140 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 42/223 (18%), Positives = 90/223 (40%), Gaps = 11/223 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + +G +++ + + D+ ++ L G Sbjct: 1 MIVEDERRLALSLAKGLTAEGYAVDVVHDGREGLHRATEGSYDLVILDIML--PGLNGYR 58 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 + +RA P++ ++ + D+G DD + KP + ++AR+ Sbjct: 59 VCAALRAAGHEVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARIKALLRRRGN 118 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++ E G +R+ + + G L +E +LE L G+ V+K QI ++ Sbjct: 119 GAGASPVLELGELRIDTAAHRVFLDGSEVTLTAKEFSVLEQLALRAGEVVSKAQILEHVW 178 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 F + N+VE ++S LR+KL + + R GY ++ Sbjct: 179 D-FAYDGDPNIVEVYVSTLRRKLDA----GLIRTVRGAGYRLE 216 >gi|196039393|ref|ZP_03106698.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|196045673|ref|ZP_03112903.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|218906439|ref|YP_002454273.1| DNA-binding response regulator [Bacillus cereus AH820] gi|196023504|gb|EDX62181.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|196029553|gb|EDX68155.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|218535506|gb|ACK87904.1| DNA-binding response regulator [Bacillus cereus AH820] Length = 223 Score = 140 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 42/226 (18%), Positives = 89/226 (39%), Gaps = 12/226 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +++ +G + + DV ++ L Sbjct: 3 ILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEG-PDVLILDVML--PDTDGY 59 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL R+ R +P++ ++ + L G DD V KP ++ E++ RV + RR+K Sbjct: 60 ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRVK 119 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEV-----FPLPRRERRILEYLMANRGKRVAKTQIFS 175 + I P+ + L RE + + ++N + + ++ Sbjct: 120 KTEVTVSHEVIEAGEITICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 179 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G F+ V+ + +LRKKL N + + + +GY +D Sbjct: 180 KVWG-FEYIGNTRAVDIMVQRLRKKLGNSG--EYIKTIYGVGYKLD 222 >gi|52140301|ref|YP_086529.1| DNA-binding response regulator [Bacillus cereus E33L] gi|228930266|ref|ZP_04093274.1| DNA-binding response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|51973770|gb|AAU15320.1| DNA-binding response regulator [Bacillus cereus E33L] gi|228829407|gb|EEM75036.1| DNA-binding response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 223 Score = 140 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 42/226 (18%), Positives = 88/226 (38%), Gaps = 12/226 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +++ +G + + DV ++ L Sbjct: 3 ILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEG-PDVLILDVML--PDTDGY 59 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL R+ R +P++ ++ + L G DD V KP ++ E++ RV + RR+K Sbjct: 60 ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRVK 119 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEV-----FPLPRRERRILEYLMANRGKRVAKTQIFS 175 I P+ + L RE + + ++N + + ++ Sbjct: 120 KKEVTVSHEVIEAGEITICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 179 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G F+ V+ + +LRKKL N + + + +GY +D Sbjct: 180 KVWG-FEYIGNTRAVDIMVQRLRKKLGNSG--EYIKTIYGVGYKLD 222 >gi|268318212|ref|YP_003291931.1| two component transcriptional regulator, winged helix family [Rhodothermus marinus DSM 4252] gi|262335746|gb|ACY49543.1| two component transcriptional regulator, winged helix family [Rhodothermus marinus DSM 4252] Length = 243 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 40/226 (17%), Positives = 83/226 (36%), Gaps = 13/226 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61 +++DD + F +G +E + + DV ++ + G +V Sbjct: 21 LIVDDEDDILALLAYNFKREGFEVELARDGVEALEKAARWQPDVIILDIMMPNMDGIEVC 80 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARVAA 114 R P++ ++ + + + G D V KP+ R +L Sbjct: 81 RRIRRDARLRTTPILMLTARTEEEDQIQGLEIGADMYVGKPVSVPVLLSQTRALLRGARR 140 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + R+ E LPR+E +L +L A+ GK + ++ Sbjct: 141 YETPPDLLRIHDLEIDRDRYLVYREGPEGRETVRLPRKEFELLYFLAAHPGKVFTRQELL 200 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G V+ V+ HI K+R+KL + +++ + +GY Sbjct: 201 DEVWGRDVYVVD-RTVDVHIRKIREKLGSH----YIETVKGVGYKF 241 >gi|229100335|ref|ZP_04231208.1| Response regulator [Bacillus cereus Rock3-29] gi|228683091|gb|EEL37096.1| Response regulator [Bacillus cereus Rock3-29] Length = 240 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 35/225 (15%), Positives = 88/225 (39%), Gaps = 8/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +++DD + + A+ +G + + + + + D+ ++ ++ Sbjct: 13 ILIVDDEKEILNLLEAVLKKEGFQHIYTCTTGKEGIHMCKQVQPDLIILD--IMLPDLDG 70 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR---EILARVAAIYR 117 + + IR + VP+ +S + G DD + KP + + + Sbjct: 71 YSVCQQIRQFTFVPIFFLSAKNEDLDKILGLSIGGDDYITKPFSPKEVAYKMKAFFRRNQ 130 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + + G I + + L +E IL +L+ N + +K +++ A+ Sbjct: 131 YQEKARIVYQFGDITIDEAQGTVLRGDTLLTLTAKEFNILLFLIKNPNQIFSKARLYEAV 190 Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 +G +N++ H+ LR+K+ + + + R LGY ++ Sbjct: 191 WGDT-YLGNDNIMMVHMRHLREKIEDNPSKPHYLVTVRGLGYKLN 234 >gi|229134011|ref|ZP_04262831.1| Two-component response regulator [Bacillus cereus BDRD-ST196] gi|228649346|gb|EEL05361.1| Two-component response regulator [Bacillus cereus BDRD-ST196] Length = 228 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 48/226 (21%), Positives = 89/226 (39%), Gaps = 11/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++++ ++G ++ + + + ++ L Sbjct: 5 ILIVEDEDILREIMKDYLLNEGYNVLEALDGKEALSIFEEHEVHLIILDIML--PELDGW 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR------EILARVAAI 115 + R IR S VP+I ++ TL F+ G DD V KP + L Sbjct: 63 AVCRRIRKKSNVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLIESRYS 122 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + + I V R V GE + E IL Y M N+G +++ Q+ + Sbjct: 123 STVNVSTADTLTSSGIHVHFPSRTVTVDGEGISMTHTEFEILTYFMQNQGIVISREQLIT 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 I+G ++ A ++ V SHI LR KL K + + GY + Sbjct: 183 KIWG-YEFAGDDRTVNSHIRNLRHKLGQK--ATCIVTVVRAGYKFE 225 >gi|168184914|ref|ZP_02619578.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|182672034|gb|EDT83995.1| DNA-binding response regulator [Clostridium botulinum Bf] Length = 229 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 48/227 (21%), Positives = 88/227 (38%), Gaps = 9/227 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + F D G S+ ++ D+ I ++ Sbjct: 5 ILIVDDEDDIVSFIKDYFQDQGYSVITASNGREAIEYCDK---DIDIILLDIMMPNIDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + IR P+I +S S + G DD + KP +E+ ARV A RR K Sbjct: 62 QICQKIRDKVSCPIIFLSARQSEFDKIKGLSVGGDDYIVKPFSIKELKARVQAHLRREKR 121 Query: 122 SNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + R + E +E I+E L + + +K QI+ + Sbjct: 122 VPLNNRSKISFGKLTLDINSRRVHYEEEEILFTAKEFDIVELLALHPQQVFSKEQIYEKV 181 Query: 178 YGLFDEAVEENVVESHISKLRKK-LRNKLGFDPVDSKRFLGYSIDWN 223 +G +D + N V HI K+R K ++ + + + +GY + N Sbjct: 182 WG-YDAEGDANTVAEHIKKIRAKFIKRNASLNHIATVWGVGYRWERN 227 >gi|30020982|ref|NP_832613.1| two-component response regulator [Bacillus cereus ATCC 14579] gi|229128203|ref|ZP_04257184.1| Two component transcriptional regulator, winged helix [Bacillus cereus BDRD-Cer4] gi|29896535|gb|AAP09814.1| Two-component response regulator [Bacillus cereus ATCC 14579] gi|228655062|gb|EEL10919.1| Two component transcriptional regulator, winged helix [Bacillus cereus BDRD-Cer4] Length = 215 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 39/220 (17%), Positives = 94/220 (42%), Gaps = 11/220 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++ DD + A F +G + E + + D++ ++ + Sbjct: 4 LIADDEQDMLRILKAYFEKEGFEVLLAKDGEEALQIFYDEKIDLAILDWM--MPKHSGIT 61 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + I+ +S V ++ ++ + L SG D+ V KP H ++ R ++L Sbjct: 62 VCQEIKKNSSVKVLMLTAKSESEDELAALQSGADEYVKKPFHPGVLITRA----KKLIQH 117 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 ++ + +++ + + E +++ + ++G + + ++ ++G FD Sbjct: 118 DDIIQVQDVKINFAKNKVYKNDIELEITKTELELIKCFLNHKGTILTRKKLLDIVWG-FD 176 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 EE V++H+ +LRKK+ D + + R LGYS++ Sbjct: 177 YFGEERTVDTHVRRLRKKIGE----DIIKTHRGLGYSLEE 212 >gi|29376802|ref|NP_815956.1| DNA-binding response regulator VanRB [Enterococcus faecalis V583] gi|256960861|ref|ZP_05565032.1| regulatory protein vanRB [Enterococcus faecalis Merz96] gi|2500744|sp|Q47744|VANR_ENTFA RecName: Full=Regulatory protein vanRB gi|1209526|gb|AAB05622.1| response regulator [Enterococcus faecalis] gi|29344267|gb|AAO82026.1| DNA-binding response regulator VanRB [Enterococcus faecalis V583] gi|256951357|gb|EEU67989.1| regulatory protein vanRB [Enterococcus faecalis Merz96] Length = 220 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 51/221 (23%), Positives = 91/221 (41%), Gaps = 7/221 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + + A + ++ + ++ L G Sbjct: 5 ILLVEDDDHICNTVRAFLAEARYEVDACTDGNEAHTKFYENTYQLVILDIML--PGMNGH 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL R RA + P++ ++ + + FD+ DD V KP R +L RV A+ RR Sbjct: 63 ELLREFRAQNDTPILMMTALSDDENQIRAFDAEADDYVTKPFKMRILLKRVEALLRRSGA 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 G + + + G PL R+E IL L+ N+G+ + I S I+G + Sbjct: 123 LAKEFRVGRLTLLPEDFRVLCDGTELPLTRKEFEILLLLVQNKGRTLTHEIILSRIWG-Y 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 D + + V +HI LR KL + + + R +GY ++ Sbjct: 182 DFDGDGSTVHTHIKNLRAKLPE----NIIKTIRGVGYRLEE 218 >gi|296535791|ref|ZP_06897952.1| response regulator [Roseomonas cervicalis ATCC 49957] gi|296263859|gb|EFH10323.1| response regulator [Roseomonas cervicalis ATCC 49957] Length = 259 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 46/229 (20%), Positives = 89/229 (38%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++ L +G + G + + + D+ ++ L G+ L Sbjct: 27 ILVVEDDGEMRTLIAKLLRQNGFRVTGARNGAEMWDTMALSPVDLVLLDVML--PGQSGL 84 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 +L R IRA S+VP+I ++ + + G DD + KP E+LAR+ A+ RR + Sbjct: 85 DLCRTIRARSEVPIIMVTARGEEADRVVGLELGADDYLPKPFSRPELLARIRAVLRRAQA 144 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF---------PLPRRERRILEYLMANRGKRVAKTQ 172 NRA L E +L + + +++ Q Sbjct: 145 GANRAGMVSGDRMVFSDWVLDTRRRELAAPDGSAVDLSSGEYDLLLAFCEHPQRVLSRDQ 204 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + ++V+ V+ +S+LR+KL + + R GY Sbjct: 205 LLDLARNRISDSVD-RSVDVMVSRLRRKLEPLPDSPAVIKTVRGAGYMF 252 >gi|290955975|ref|YP_003487157.1| two component system transcriptional regulator PhoP [Streptomyces scabiei 87.22] gi|260645501|emb|CBG68589.1| putative POSSIBLE TWO COMPONENT SYSTEM RESPONSE TRANSCRIPTIONAL POSITIVE REGULATOR PHOP [Streptomyces scabiei 87.22] Length = 247 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 40/226 (17%), Positives = 90/226 (39%), Gaps = 11/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++ A G + ++ + R + ++ L Sbjct: 14 LLVVEDEPSIRTLLEATLRLTGYEVSSTDTGQSALVEVERLRPHLVLLDVML--PDLDGF 71 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAA 114 E+ R +RA P++ ++ + G DD V+KP E+ + R A Sbjct: 72 EVTRRLRAAGDECPILFLTARTGTDDRIQGLSVGGDDYVSKPFSIEEVLLRIEAILRRTA 131 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + + + G+ L E ++L YL++N G+ V+K QI Sbjct: 132 PVDAALPPPSVLRYADLELDEGAHEVHRAGQYIALSPTEFKLLAYLLSNAGQVVSKVQIL 191 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +D A + ++E+++ LR+K+ + + + R +GY + Sbjct: 192 DHVWS-YDFAGDARIIETYVRYLRRKI-DCFEPPLIQTVRGVGYCL 235 >gi|239623920|ref|ZP_04666951.1| two-component system protein response regulator [Clostridiales bacterium 1_7_47_FAA] gi|239521951|gb|EEQ61817.1| two-component system protein response regulator [Clostridiales bacterium 1_7_47FAA] Length = 234 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 50/228 (21%), Positives = 94/228 (41%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEG-FNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +L+DD + D + +G + + + + DV ++ L Sbjct: 5 ILLVDDEKDIVDLVEEVLRKEGFRVIQKAYNGTDALKICRDFQPDVIVLDIML--PDIDG 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R IR S ++ +S + G DD V KP RE++ R+ A RR + Sbjct: 63 LEVCRQIRQFSYCSILFLSSKNDDVDKILGLSWGGDDYVTKPFSPREVVFRIKAQLRRQQ 122 Query: 121 VSNNRAETG-------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 P+R+ + G+ L RE +L YLM N K ++K ++ Sbjct: 123 YQTASPLQEGTSLTVGPLRIDKESCRAYKGGQEIGLTGREYLLLTYLMENADKIISKERL 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + ++G + ++ +N + HI LR+K+ + + + + LGY + Sbjct: 183 YEQVWGEY-SSICDNTIMVHIRHLREKIEDLPSQPQQLITVKGLGYKL 229 >gi|170078061|ref|YP_001734699.1| two-component response regulator [Synechococcus sp. PCC 7002] gi|169885730|gb|ACA99443.1| two-component response regulator [Synechococcus sp. PCC 7002] Length = 222 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 89/224 (39%), Gaps = 12/224 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + F +G ++ ++ + + ++ L L Sbjct: 4 ILIIEDEPRIASFLEKGFKSEGFTVTIASTAKEALDWALQYPFALLILDLGL--PDADGL 61 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ +R P+I ++ L + + G DD + KP +E+LARV A R Sbjct: 62 EVLHDLRGQGVTAPIIILTARDDLDDKVTGLNLGADDYLGKPFSFKELLARVQARLRTFT 121 Query: 121 VSNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 R LP RE +LE L+ + + +++ Q+ Sbjct: 122 PRATPEPMCLKTQTLELDLKARRVRQGDVWLELPTREFILLETLLRHPDQVLSRQQLLDQ 181 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G +D N+V+ +I LRKKL G D +++ R +GY + Sbjct: 182 VWG-YDYDPGSNIVDVYIGYLRKKL----GSDLIETVRGIGYRL 220 >gi|94499897|ref|ZP_01306433.1| two-component response regulator PhoB [Oceanobacter sp. RED65] gi|94428098|gb|EAT13072.1| two-component response regulator PhoB [Oceanobacter sp. RED65] Length = 232 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 44/222 (19%), Positives = 91/222 (40%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +++DD A +++ G ++ + L ++ ++ L G G + Sbjct: 8 ILIVDDEASIREMIAVALEMAGYECIEASNTQDAYSLIIDEHPEMILLDWMLPGTSGLEF 67 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + ++VP+I ++ + ++G DD + KP RE++AR+ A+ RR Sbjct: 68 ARRLKRDDRTNEVPIIMLTAKGEEDNKVLGLEAGADDYITKPFSPRELVARLKAVLRRTT 127 Query: 121 VSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + E + E R+L++ M ++ + ++TQ+ ++ Sbjct: 128 PQGIEDPIEVNGLILDPVCHRVSANDEALDIGPTEYRLLQFFMTHQERAYSRTQLLDQVW 187 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G + VEE V+ HI +LRK L + + + R GY Sbjct: 188 G-GNVYVEERTVDVHIRRLRKALGSNYEH-LIQTVRGTGYRF 227 >gi|117676235|ref|YP_863811.1| DNA-binding transcriptional activator CusR [Shewanella sp. ANA-3] gi|117615059|gb|ABK50512.1| two component heavy metal response transcriptional regulator, winged helix family [Shewanella sp. ANA-3] Length = 226 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 37/224 (16%), Positives = 98/224 (43%), Gaps = 6/224 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G ++ ++ L +A D+ ++ L Sbjct: 3 ILIVEDEIKTGEYLSKGLREAGFVVDHADNGLTGYHLAMTAEYDLVILDIML--PDMNGW 60 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118 ++ R++R A +P++ ++ +++ + + G DD + KP E+LARV Sbjct: 61 DIIRMLRTAGKGMPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVKTLLRRGN 120 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++ ++ + + R G L +E +LE+ + ++G+ + ++ I S ++ Sbjct: 121 TMITESQFRVAGLSIDLVSRKVSRAGNRIVLTSKEFSLLEFFIRHQGEVLPRSLIASQVW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + + + N ++ + +LR K+ N + + R +GY ++ Sbjct: 181 DM-NFDSDTNAIDVAVKRLRAKIDNDYETKLIQTVRGVGYMLEV 223 >gi|322835521|ref|YP_004215547.1| two component transcriptional regulator, winged helix family [Rahnella sp. Y9602] gi|321170722|gb|ADW76420.1| two component transcriptional regulator, winged helix family [Rahnella sp. Y9602] Length = 240 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 44/228 (19%), Positives = 85/228 (37%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + D+G + D ++ L G L Sbjct: 7 ILIVEDDGDIAELLSLHLRDEGYEITHAADGNLGVAHLEKGGWDALILDLML--PGVDGL 64 Query: 62 ELPRI-IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-------REILARVA 113 E+ R P+I IS S + + G DD + KP + + R Sbjct: 65 EICRRARNMTRYTPIIIISARSSEVHRVLGLELGADDYLAKPFSMLELVARVKALFRRQE 124 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 A+ R LK+ + + RD + + L RE +L + N GK ++ + Sbjct: 125 AMSRNLKMDAGTLSFSGLVIDPIARDVMLNHQSVELTPREFDLLYFFAKNPGKVFSRLSL 184 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + ++G ++ E+ V +HI++LR K+ N + + + GY Sbjct: 185 LNQVWG-YEHEGYEHTVNTHINRLRIKIETNPAEPERILTVWGKGYKF 231 >gi|218232702|ref|YP_002366911.1| DNA-binding response regulator [Bacillus cereus B4264] gi|218160659|gb|ACK60651.1| DNA-binding response regulator [Bacillus cereus B4264] Length = 227 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 42/224 (18%), Positives = 91/224 (40%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G E + + ++ ++ L L Sbjct: 5 ILIVEDEEKIARVVQLELEFEGYESEIAKTGTEAMEKFGNGNWNLILLDVML--PNISGL 62 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIY 116 E+ R IR ++ +P+I ++ S+ + D G D + KP I A + Sbjct: 63 EVLRRIRLKNAVIPIILLTARDSVVDKVSGLDQGASDYITKPFQIEELLARIRACLRISN 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + N+ + + + R+ + L RE +L +LM + + + + QI + Sbjct: 123 VIKEEENSSYQIADLYLDEKTREVKRGNHFVELTPREFDLLLFLMKHENQVLNREQIVTN 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G FD + NVV+ +I LR+K+ + + + R +GY + Sbjct: 183 VWG-FDYYGDTNVVDVYIRYLRRKIDCNVDVPLIHTVRGVGYVL 225 >gi|241554112|ref|YP_002979325.1| two component transcriptional regulator, winged helix family [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240863418|gb|ACS61080.1| two component transcriptional regulator, winged helix family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 234 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 47/225 (20%), Positives = 84/225 (37%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++D G++ + D+ ++ L Sbjct: 5 ILVVDDEPHIRDVICFALERAGLAWMAARNGTEAMAAFRRGNIDLIILDIG--MPEMDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR S +P++ +S + + G DD V KP RE++ARV AI +R Sbjct: 63 EVCRQIRKTSGLPILFLSARDEEIDRILGLEIGGDDYVTKPFSPRELVARVKAILKRSSN 122 Query: 122 SNNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 V GR + E IL+ L++ ++ Q+ Sbjct: 123 GAEPDRRHATLVAGELSLDRRGRTVMFGENTIAMTALEFAILDALLSRPDMVFSREQLME 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 A YG V + ++SHI +R K G + + R +G+ + Sbjct: 183 AAYGAGTY-VADRTIDSHIRNIRAKFLVAGGQGIIATVRGIGFKL 226 >gi|158318323|ref|YP_001510831.1| two component transcriptional regulator [Frankia sp. EAN1pec] gi|158113728|gb|ABW15925.1| two component transcriptional regulator, winged helix family [Frankia sp. EAN1pec] Length = 229 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 48/222 (21%), Positives = 95/222 (42%), Gaps = 8/222 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + D +G + +S + S D+ ++ L Sbjct: 8 LVVDDEEAITDLVAMALRYEGFDVSAAHSGQAALTQVSREPPDLLVLDVML--PDIDGFA 65 Query: 63 LPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + + A VP + ++ + + + G DD V KP E++ARV AI RR + Sbjct: 66 VCQRLRNAGRDVPTLFLTARDTTEDKVHGLTLGGDDYVTKPFVVSELVARVRAILRRAGM 125 Query: 122 SNNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++ E + R+ G + L E R+L YL+ N K + + Q+ ++ Sbjct: 126 ADGAPEPLRFADLELDPETREVRRAGRLVELTVTEYRLLHYLLVNARKVLTRAQLLDHVW 185 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G D + V+E+++S LR+K+ + + + R +GY + Sbjct: 186 G-HDFGGDARVLETYVSYLRRKIDDAP-PALIHTVRGVGYVL 225 >gi|223986859|ref|ZP_03636837.1| hypothetical protein HOLDEFILI_04160 [Holdemania filiformis DSM 12042] gi|223961164|gb|EEF65698.1| hypothetical protein HOLDEFILI_04160 [Holdemania filiformis DSM 12042] Length = 228 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 42/223 (18%), Positives = 84/223 (37%), Gaps = 4/223 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++D + + +G + + L D+ ++ L G G ++ Sbjct: 4 ICCVEDDSAILTALQYTLSQEGYEVMTAMTKTQGLELIQQESFDLVLLDVTLPDGSGYEI 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118 + R ++P+I ++ + D G DD + KP RE+ Sbjct: 64 CKRMREDSRLKEIPVIFLTACDDEVNIVMGLDLGADDYITKPFRVRELISRMNSVLRRAG 123 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 K + + + + + L E R+L L +R + + + Q+F AI+ Sbjct: 124 KKQAETTINYQDLSINTIAARVFKNNQEVFLTGMEYRLLLILATHRNQVMTRDQLFEAIW 183 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 L E V +N + +I +LR+KL + + + R LGY + Sbjct: 184 DLGGEYVNDNTLTVYIKRLREKLEDDPAHPQLIRTIRGLGYKL 226 >gi|171912654|ref|ZP_02928124.1| DNA-binding heavy metal response regulator [Verrucomicrobium spinosum DSM 4136] Length = 226 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 32/222 (14%), Positives = 85/222 (38%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++ + G ++ E + D+ ++ L Sbjct: 3 ILIVEDERRSREFLAKGLQEAGYVVDVAGDGEEGLQATRDSAFDLIVLDVML--PVRDGW 60 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-HHREILARVAAIYRRL 119 + +R + P++ ++ S+ + + G DD + KP + + R Sbjct: 61 HVLEHLRTEGCETPVLFLTARDSVPDRVRGLELGADDYLVKPFAWTEFLARVRTLLRRSP 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + G + + L +E ++L L RG+ +++T I ++ Sbjct: 121 VRTAEIIKIGDLELDLPRMKARRGRHPIDLTAKEFQLLSLLARRRGEVLSRTTICEQVWD 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + + + N V+ + +LR+K+ + ++R LGY ++ Sbjct: 181 M-NFSTDSNAVDVAMGRLRRKVDEPFENKLIHTQRGLGYILE 221 >gi|197124506|ref|YP_002136457.1| transcriptional regulator [Anaeromyxobacter sp. K] gi|196174355|gb|ACG75328.1| two component transcriptional regulator, winged helix family [Anaeromyxobacter sp. K] Length = 230 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 49/224 (21%), Positives = 88/224 (39%), Gaps = 11/224 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L+DD + G + E D+ ++ L E Sbjct: 5 LLVDDERDLLSLLDFNLRASGFETLLATTGEQALSHLRRRVPDLVLLDVML--PDVSGTE 62 Query: 63 LPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIY 116 + R I++ VP++ ++ + F+ G DD V KP RE++ R+ Sbjct: 63 VCRQIKSDPRTRHVPVVMLTAKGDEVDRVVGFELGADDYVTKPFSVRELVLRLKAVLRRA 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 GPIRV + V G L E ++L LM+ G+ ++ Q+ Sbjct: 123 GARPSERPPESVGPIRVDVESHRAYVDGAEVVLTPLEFKLLTTLMSRLGRVQSREQLLED 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ VE V++H+ +LR+KL G D +++ R +GY + Sbjct: 183 VW-EMSAEVETRTVDTHVKRLREKLG--SGRDLLETVRGIGYRL 223 >gi|73662632|ref|YP_301413.1| response regulator ArlR [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|123642594|sp|Q49XM7|ARLR_STAS1 RecName: Full=Response regulator ArlR gi|72495147|dbj|BAE18468.1| response regulator ArlR [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 220 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 48/218 (22%), Positives = 87/218 (39%), Gaps = 4/218 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + ++ + S D+ ++ L L Sbjct: 4 ILIVEDEQNLARFIELELEHENYDVDIEYDGKPGLEKALSNTYDLILLDLML--PNINGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR + P+I I+ + D G DD + KP E+ R + Sbjct: 62 EICRQIRQNQTTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEEL-LARIRAMLRRQP 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 N + I + D V G+ L + E +L L+ NR + + QI + ++G + Sbjct: 121 QKNLIDIKGIIIDKDAFKVTVDGQPLDLTKTEYDLLFLLVENRNHVLQREQIITDVWG-Y 179 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 D VE NVV+ +I LR KL+ +++ R +GY Sbjct: 180 DTEVETNVVDVYIRYLRNKLKPFGKDKCIETVRGVGYV 217 >gi|30262227|ref|NP_844604.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47527505|ref|YP_018854.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49185067|ref|YP_028319.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|65319516|ref|ZP_00392475.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bacillus anthracis str. A2012] gi|165872233|ref|ZP_02216871.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167632884|ref|ZP_02391210.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|167641072|ref|ZP_02399328.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170686369|ref|ZP_02877590.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|170708398|ref|ZP_02898841.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|177650825|ref|ZP_02933722.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190567848|ref|ZP_03020759.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|196033952|ref|ZP_03101363.1| DNA-binding response regulator [Bacillus cereus W] gi|196039761|ref|ZP_03107065.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|196046933|ref|ZP_03114154.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|218903356|ref|YP_002451190.1| DNA-binding response regulator [Bacillus cereus AH820] gi|227814973|ref|YP_002814982.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228927282|ref|ZP_04090343.1| Uncharacterized sensory transduction protein ykoG [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228945834|ref|ZP_04108178.1| Uncharacterized sensory transduction protein ykoG [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229121769|ref|ZP_04250990.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus 95/8201] gi|229601295|ref|YP_002866569.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|254684793|ref|ZP_05148653.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254722202|ref|ZP_05183990.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254737239|ref|ZP_05194943.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254743574|ref|ZP_05201259.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254751556|ref|ZP_05203593.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|254759070|ref|ZP_05211097.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|300118053|ref|ZP_07055801.1| DNA-binding response regulator [Bacillus cereus SJ1] gi|301053744|ref|YP_003791955.1| DNA-binding response regulator [Bacillus anthracis CI] gi|30256858|gb|AAP26090.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47502653|gb|AAT31329.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49178994|gb|AAT54370.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|164712026|gb|EDR17565.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167510970|gb|EDR86360.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|167531696|gb|EDR94361.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170126637|gb|EDS95521.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|170669445|gb|EDT20187.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|172083286|gb|EDT68347.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190560903|gb|EDV14877.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|195993632|gb|EDX57589.1| DNA-binding response regulator [Bacillus cereus W] gi|196022308|gb|EDX60994.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|196029464|gb|EDX68067.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|218538518|gb|ACK90916.1| DNA-binding response regulator [Bacillus cereus AH820] gi|227003622|gb|ACP13365.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228661685|gb|EEL17304.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus 95/8201] gi|228813816|gb|EEM60093.1| Uncharacterized sensory transduction protein ykoG [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228832358|gb|EEM77934.1| Uncharacterized sensory transduction protein ykoG [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229265703|gb|ACQ47340.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|298724364|gb|EFI65058.1| DNA-binding response regulator [Bacillus cereus SJ1] gi|300375913|gb|ADK04817.1| DNA-binding response regulator [Bacillus cereus biovar anthracis str. CI] Length = 227 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 44/224 (19%), Positives = 92/224 (41%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G E + + D+ ++ L L Sbjct: 5 ILIVEDEEKIARVVQLELEFEGYESEIAKTGTEAMEKFGNGNWDLILLDVML--PNISGL 62 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIY 116 E+ R IR ++ +P+I ++ S+ + D G D + KP I A + Sbjct: 63 EVLRRIRLKNAVIPIILLTARDSVVDKVSGLDQGASDYITKPFQIEELLARIRACLRISN 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + N+ + + + R+ + + L RE +L +LM + + + + QI + Sbjct: 123 VVKEEENSSYQIADLYLDEKTREVKRGNSLIDLTPREFDLLLFLMKHENQVLNREQIVTN 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G FD + NVV+ +I LRKK+ + + + R +GY + Sbjct: 183 VWG-FDYYGDTNVVDVYIRYLRKKVDCNVDVPLIHTVRGVGYVL 225 >gi|322421546|ref|YP_004200769.1| two component heavy metal response transcriptional regulator, winged helix family [Geobacter sp. M18] gi|320127933|gb|ADW15493.1| two component heavy metal response transcriptional regulator, winged helix family [Geobacter sp. M18] Length = 224 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 51/223 (22%), Positives = 101/223 (45%), Gaps = 5/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + ++G S++ N+ E L + D+ ++ L KG Sbjct: 3 ILIIEDEQKAANYLKKGLSENGFSVDIANNGEDGLHLAMTEAYDLIILDVMLPIKG--GW 60 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + + +R A + VP+I +S ++ + + G DD + KP E+LAR+ I RR Sbjct: 61 AIIKELRDAGNDVPVIFLSARDAVHDRVHGLELGADDYLVKPYAFSELLARIRIILRRHP 120 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + + + G L +E ++L ++ RG+ + +T I ++G Sbjct: 121 LQQSELLKMADLELDLIRHKARRGGHSLDLTVKEFQLLALMLRRRGEVLTRTTISEQVWG 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + + + NVV+ I +LRKK+ + + + R +GY ID Sbjct: 181 I-NFDSDTNVVDVAIRRLRKKVDDPFPLKLIHTIRGVGYVIDE 222 >gi|237746571|ref|ZP_04577051.1| response regulator [Oxalobacter formigenes HOxBLS] gi|229377922|gb|EEO28013.1| response regulator [Oxalobacter formigenes HOxBLS] Length = 233 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 45/222 (20%), Positives = 93/222 (41%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D + + G S R DV ++ L G ++ Sbjct: 8 ILVVEDEPAIAELVAFSVKSAGWMPVTVYSGTEAWTALQRFRPDVVLLDWMLPDLSGMRL 67 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118 L R R +P+I ++ + + D G DD + KP +E++AR+ A + Sbjct: 68 LSRIREHREMKTLPVIMLTAKTLEEDKVAGLDQGADDYITKPFSPKELVARINALLRRKA 127 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + + G + + + ++ + E R+L++LMAN + ++ Q+ ++ Sbjct: 128 PERAKSLLRAGAVTLDPESCQVKIGNGEIEMGHSEFRLLKFLMANPDRVFSRGQLLDKVW 187 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +EE V+ HI +LRK L K + + + R +GY + Sbjct: 188 SN-QLDIEERTVDVHILRLRKAL--KGQENLIRTVRGMGYML 226 >gi|163790641|ref|ZP_02185069.1| two-component response regulator [Carnobacterium sp. AT7] gi|159874089|gb|EDP68165.1| two-component response regulator [Carnobacterium sp. AT7] Length = 233 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 41/225 (18%), Positives = 87/225 (38%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D A + ++ + ++ ++ L Sbjct: 3 ILIVDDEPKILDIVEAYLTIKRFQVFRASNGIEALEKFELVQPNLIVLDLML--PDISGT 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + IR S VP+I ++ + L+ G DD + KP +E++ARV + RR Sbjct: 61 VICQKIRKTSDVPIIMLTAKSTENDILNGLQIGADDYIVKPFSPKELVARVETVLRRSDS 120 Query: 122 SNNRAETGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 S ++ + + + L E +L L + K ++ Q+ Sbjct: 121 SVVTETKWSFDKGNLVIYPENKQVFKNQKEVILTPTEFELLTLLASYPKKIFSREQLLEN 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220 + GL + V + +++SHI LR+K+ + + + +GY Sbjct: 181 VKGL-EFDVLDRIIDSHIKNLRQKIEDNTRQPYFILTVYGMGYRF 224 >gi|129157|sp|P28257|YCF27_GALSU RecName: Full=Probable transcriptional regulator ycf27; AltName: Full=OmpR-like protein gi|73047|pir||RGKKOR regulatory protein ompR - red alga (Cyanidium caldarium) chloroplast gi|11279|emb|CAA44458.1| regulatory protein [Cyanidium caldarium] gi|254505|gb|AAA10400.1| OmpR-like protein [Cyanidium caldarium] Length = 255 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 43/229 (18%), Positives = 90/229 (39%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD + ++ G + +L ++ ++ Sbjct: 10 ILIADDESSIRRILETRLSIIGYEVLTAPDGRSALFLFHKEHPNLVVLDVM--MPKIDGY 67 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + IR S +P+I ++ + + + G DD V KP +E+ AR+ + RR+ Sbjct: 68 GVCQEIRKESDIPIIMLTALGDVTDRITGLELGADDYVVKPFSPKELEARIRCVLRRVDK 127 Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 ++ + + E L E +LE L++N G+ +++T I Sbjct: 128 FYFSNTFTNSGIINIGFLKIDINRKQVYKNEERIRLTGMEFNLLELLISNSGEPLSRTTI 187 Query: 174 FSAIYG-LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 ++G + ++ VV+ HIS+LR KL + + + + R GY Sbjct: 188 LEEVWGYTPERHLDTRVVDVHISRLRAKLEDDPSNPELILTSRGTGYLF 236 >gi|328466857|gb|EGF37967.1| putative response regulator [Lactobacillus helveticus MTCC 5463] Length = 238 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 45/229 (19%), Positives = 90/229 (39%), Gaps = 15/229 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G ++ E D+ ++ L + L Sbjct: 5 ILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVDKYDPDLMILDLML--PKKDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R +P+I ++ + + + G DD V KP +RE++ARV A RR + Sbjct: 63 EVAREVRQTHDMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRDI 122 Query: 122 SNNRAETGPIRVFSD-----------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + E G L RE +L YL + G+ + + Sbjct: 123 VKKAEAANQDDTDKNIKIGNLVIMPDAYIVEKDGRKIELTHREFELLYYLAQHMGQVMTR 182 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGY 218 + ++G +D + V+ + +LR+K+ + + ++R +GY Sbjct: 183 EHLLQTVWG-YDYFGDVRTVDVTVHRLREKIEDNPIQPQVLVTRRGVGY 230 >gi|256390113|ref|YP_003111677.1| two component transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256356339|gb|ACU69836.1| two component transcriptional regulator, winged helix family [Catenulispora acidiphila DSM 44928] Length = 254 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 42/233 (18%), Positives = 90/233 (38%), Gaps = 18/233 (7%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD ++ + +G ++ R D+ ++ + G L Sbjct: 17 LIVDDEPGIRAVLASSLEFEGYAVRTAVDGRAALAEVERGRPDLVLLDV--LMPGMDGLT 74 Query: 63 LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-------------- 107 R +R A +P++ ++ + D+G DD + KP E Sbjct: 75 ACRRLRTADPTLPVLMLTARDLTGDRVAGLDAGADDYLAKPFELDELLARVRALLRRGAL 134 Query: 108 ILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167 + L ++ E +R+ + R+ G + L R E +LE +++ + Sbjct: 135 TGEGAESGPGALSRDDHVLEYEDLRMDTLTREVTRAGRLIDLTRTEYLLLEMFLSHPRQA 194 Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + QI A++G FD N ++ ++ +RKK V + R +GY++ Sbjct: 195 LTREQILRAVWG-FDFEPASNSLDVYVMYVRKKTEFDDLPRLVQTVRGVGYAL 246 >gi|229005054|ref|ZP_04162778.1| Two-component response regulator [Bacillus mycoides Rock1-4] gi|228756156|gb|EEM05477.1| Two-component response regulator [Bacillus mycoides Rock1-4] Length = 238 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 39/228 (17%), Positives = 83/228 (36%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + +G S+ + + D++ I+ Sbjct: 5 ILIVDDEPEIIEILRLFLEMEGFSILEARDGKSALNFIQKFKIDLAIIDIM--MPNINGY 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI--------HHREILARVA 113 EL +I+R ++P+I +S + G DD ++KP ++ Sbjct: 63 ELIKIVRKEYKMPIIILSAKNQEMDKIMGLGLGADDFISKPFSLLEVLARIQAQLRRTYD 122 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 L ++ + + + +G L E ++L+ M G+ K QI Sbjct: 123 FNTDLLNQEGSQTCIDDLVLDHHSCILDKRGHEIKLSALEYKLLKLFMGEPGRIFTKKQI 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 F ++ ++N + IS+LR+K+ + + + R LGY Sbjct: 183 FENVWSDH-YYSDDNTIMVQISRLREKIEDHPRNPVYLKTIRGLGYRF 229 >gi|171319841|ref|ZP_02908923.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia ambifaria MEX-5] gi|171094903|gb|EDT39933.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia ambifaria MEX-5] Length = 223 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 43/221 (19%), Positives = 94/221 (42%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + +++ + + +L D+ ++ L Sbjct: 3 ILIVEDEPKMASYLRKGLTEASYTVDVAENGKDGLFLALHEDFDLVVLDVML--PELDGF 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +RA Q P++ ++ +++ + + G DD + KP + E LAR+ ++ RR Sbjct: 61 EVLRRLRAQKQTPVLLLTARDAIEDKVTGLELGADDYLLKPFAYAEFLARIRSLLRRAPR 120 Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + V R L +E +L+ L G+ + +T I S I+ + Sbjct: 121 NARDLLQVADLEVDLIKRRVRRADNRIDLTAQEFALLQLLAEREGEVLTRTFITSQIWDM 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + NVV++ I +LR K+ N + + R +GY ++ Sbjct: 181 -NFDSDTNVVDAAIKRLRAKIDNAYEKKLIHTIRGMGYVLE 220 >gi|171059157|ref|YP_001791506.1| two component transcriptional regulator [Leptothrix cholodnii SP-6] gi|170776602|gb|ACB34741.1| two component transcriptional regulator, winged helix family [Leptothrix cholodnii SP-6] Length = 241 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 47/223 (21%), Positives = 94/223 (42%), Gaps = 7/223 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + G + + D+ ++ L G L Sbjct: 10 LVVEDEPRLARLVSDYLVAAGYTTRIVDHGLDVLPAVRQHAPDLIVLDLML--PGRDGLS 67 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRRL 119 L + +R S+VP+I ++ L ++G DD + KP RE++ARV ++R+ Sbjct: 68 LCQELRRFSEVPVIMLTARVEEVDRLIGLEAGADDYICKPFSPREVVARVKAVLRRHKRV 127 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 A + P+ + + + G L E R+L+ L A G+ ++ Q+ ++ Sbjct: 128 PTDLVAAPSSPLVIDEERHRALLDGHELDLTPVEFRLLKALAAAPGRVFSRDQLLDKLHD 187 Query: 180 LFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221 A+ + ++SH+ LR+KL G +P+ S +GY + Sbjct: 188 DT-RALSDRTIDSHVKNLRRKLEQACPGLEPIRSIYGVGYRFE 229 >gi|148553326|ref|YP_001260908.1| two component transcriptional regulator [Sphingomonas wittichii RW1] gi|148498516|gb|ABQ66770.1| two component transcriptional regulator, winged helix family [Sphingomonas wittichii RW1] Length = 235 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 43/231 (18%), Positives = 78/231 (33%), Gaps = 15/231 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 L+DD + +G ++ ++ E D++ ++ + Sbjct: 5 IALVDDDRNILTSVSIALQSEGFTVRVYSDGESALKALLDNPPDLAVLDI--KMPRMDGM 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----------REILA 110 EL R +R S +P I ++ G DD + KP R Sbjct: 63 ELLRRLREKSSIPTIFLTSKDDELDEALGLAMGADDYITKPFSQRLLIARIRAILRRTEV 122 Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 R + G + + + G+ L E ILE L G ++ Sbjct: 123 RATPEDEADATPVEKIVRGRLEMDPARHRVQWDGKDVTLTVTEFLILEALAQRPGFVKSR 182 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 Q+ Y D V++ ++SHI +LR+K R F +++ +GY Sbjct: 183 DQLMDTAY-QDDVYVDDRTIDSHIKRLRRKFRQVDPEFKAIETLYGVGYRF 232 >gi|332535342|ref|ZP_08411138.1| two component transcriptional regulator, winged helix family [Pseudoalteromonas haloplanktis ANT/505] gi|332035215|gb|EGI71723.1| two component transcriptional regulator, winged helix family [Pseudoalteromonas haloplanktis ANT/505] Length = 241 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 39/234 (16%), Positives = 79/234 (33%), Gaps = 17/234 (7%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + ++ S E + + ++ L L Sbjct: 6 ILVVEDDREIGKLITTQLTSLNLHVDHVVSAELALKKIAKHPYGLILLDINL--PQMDGL 63 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L R I+ H +I ++ S + + G DD + KP RE+ ARV R Sbjct: 64 SLCRKIKEHYPTTSVILLTALSSDMDRVIGLEMGADDYICKPFFARELQARVKTQLRHRA 123 Query: 121 VSNNRAETGPIRVF-------------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167 + + L E +L Y + Sbjct: 124 QLLAGQNNDNSPADSEQTLNVGSLNIEFSSHQVYLGKQALNLTATEFDLLVYFARHPNHV 183 Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ Q+ ++G + + E+ V SHI++LR KL +++ +GY ++ Sbjct: 184 FSRQQLLDKVWG-YQHSGYEHTVNSHINRLRAKLEEHQQAPIIETVWGVGYKLN 236 >gi|299537140|ref|ZP_07050443.1| response regulator ArlR [Lysinibacillus fusiformis ZC1] gi|298727381|gb|EFI67953.1| response regulator ArlR [Lysinibacillus fusiformis ZC1] Length = 224 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 48/222 (21%), Positives = 96/222 (43%), Gaps = 7/222 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + +G ++ L +S DV ++ L + Sbjct: 5 ILLVEDEKHIARFVELELQHEGYEVKTAFDGREGLSLATSENFDVLLLDVML--PSINGI 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118 E+ R IR SQVP+I ++ ++ + D+G DD + KP E + + Sbjct: 63 EICRRIRTQSQVPIILLTARDAVMDRVAGLDAGADDYIVKPFAIEELLARIRTILRRVTP 122 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + ++ I + + VQG L + E +L+ L+ ++ + + I ++++ Sbjct: 123 EQTNSESLCLRDIEIDVAAYEVFVQGNKLDLTKTEYDLLKLLIEHKNRVCTREHILTSVW 182 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G +D +E NVV+ +I LR KL D +++ R +GY + Sbjct: 183 G-YDTDIETNVVDVYIRHLRTKL-PGAMNDYIETVRGVGYVM 222 >gi|295425495|ref|ZP_06818188.1| response regulator [Lactobacillus amylolyticus DSM 11664] gi|295064834|gb|EFG55749.1| response regulator [Lactobacillus amylolyticus DSM 11664] Length = 242 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 44/235 (18%), Positives = 93/235 (39%), Gaps = 17/235 (7%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D V + F +G + + + I L + + Sbjct: 5 ILMVEDDTSVAEMMEMFFKKEGWQQDVAVDGVQAVEMFKEHASEYDLITLDLNLPKKDGI 64 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ + +R S P+I ++ S + G DD V+KP ++AR+ A++RR+ Sbjct: 65 QVAKEVRQISPTVPIIMLTARGSEADQVLGLGVGADDYVSKPFSPISLIARIKALHRRVM 124 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEV--------------FPLPRRERRILEYLMANRGK 166 + +V +D ++ L +E +L + + Sbjct: 125 MDEPTNNAVNKQVNNDYDIQTQHLKISKSRREVLFDGKSVTTLTPKEFDLLFTMAQKPKQ 184 Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ Q+ ++G ++ EE V++HI KLR+KL K+G + + +GY D Sbjct: 185 VFSRDQLLELVWG-YEYYGEERTVDAHIKKLRQKLE-KVGPQVIQTVWGVGYKFD 237 >gi|262370815|ref|ZP_06064139.1| positive response regulator for the pho regulon [Acinetobacter johnsonii SH046] gi|262314177|gb|EEY95220.1| positive response regulator for the pho regulon [Acinetobacter johnsonii SH046] Length = 236 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 40/224 (17%), Positives = 88/224 (39%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ G + + R + ++ + G G + Sbjct: 6 ILIVDDELPIREMIHTSLDMAGFQCLQAEDAKQAHQMIVDQRPALILLDWMMPG-GVSGV 64 Query: 62 ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 +L R ++ S++P+I ++ + D+G DD + KP RE+++R+ A+ RR Sbjct: 65 DLCRRLKRDENLSEIPVIMLTARGEEDHKVQGLDAGADDYMTKPFSTRELVSRIKAVLRR 124 Query: 119 LKVSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + + + E R+L + M + + + Q+ Sbjct: 125 ANALSGEKSIDANGLILDPVSQRVSFGNNFLDMGPTEYRLLAFFMTHPERAYTRAQLLDQ 184 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + +E+ ++ HI +LRK L V + R GY Sbjct: 185 VWG-GNVYIEDRTIDVHIRRLRKVLEPYAADRFVQTVRGTGYRF 227 >gi|152986792|ref|YP_001349246.1| putative two-component response regulator [Pseudomonas aeruginosa PA7] gi|150961950|gb|ABR83975.1| probable two-component response regulator [Pseudomonas aeruginosa PA7] Length = 229 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 45/221 (20%), Positives = 90/221 (40%), Gaps = 5/221 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D A D + G +++ ++ L + DV ++ L G Sbjct: 4 LIVEDEAKTADYLNRGLTEQGFTVDLADNGIDGRHLALNGEYDVIVLDVML--PGIDGYG 61 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA--AIYRRLK 120 + R +R Q P+I ++ ++ + G DD + KP E++AR+ Sbjct: 62 VLRALREQRQTPVIMLTARERVEDRVRGLREGADDYLIKPFSFLELVARLQALTRRGGNH 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 S ++ + + R G L +E +L L G+ ++KT I ++ + Sbjct: 122 ESASQMRVADLSIDLLSRKVFRGGSRLELTAKEYALLCVLAQRSGEILSKTAIAELVWDI 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + NVVE I +LR KL + + R +GY ++ Sbjct: 182 -NFDTDTNVVEVAIKRLRAKLDGPFENKLLHTIRGMGYVLE 221 >gi|293410323|ref|ZP_06653899.1| hypothetical protein ECEG_01281 [Escherichia coli B354] gi|291470791|gb|EFF13275.1| hypothetical protein ECEG_01281 [Escherichia coli B354] Length = 260 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 50/219 (22%), Positives = 96/219 (43%), Gaps = 3/219 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D ++ + G ++ + +L + ++ L G Sbjct: 40 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIML--PGMDGW 97 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + +R Q P+I ++ S+ + DSG +D + KP E+LARV A R+ Sbjct: 98 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 157 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 N+ E +R+ S + L R+E ++L L + G+ + +T I S I+G+ Sbjct: 158 LNSTLEISGLRMDSVSQSVSRDNINITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 216 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + N V+ I +LR K+ + + R +GYS Sbjct: 217 NFDSDTNTVDVAIRRLRAKVDEPFPEKLIATIRGMGYSF 255 >gi|206976925|ref|ZP_03237827.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|206744891|gb|EDZ56296.1| DNA-binding response regulator [Bacillus cereus H3081.97] Length = 223 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 41/226 (18%), Positives = 88/226 (38%), Gaps = 12/226 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +++ +G + + DV ++ L Sbjct: 3 ILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEG-PDVLILDVML--PDTDGY 59 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL R+ R +P++ ++ + L G DD V KP ++ E++ RV + RR+K Sbjct: 60 ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRVK 119 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEV-----FPLPRRERRILEYLMANRGKRVAKTQIFS 175 I P+ + L RE + + ++N + + ++ Sbjct: 120 KKEVTVSYEVIGAGEITICPKERKVHVSGQEVQLTYREFNLCQLFVSNPQRVFMRDELLE 179 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G F+ V+ + +LRKKL + + + + +GY +D Sbjct: 180 KVWG-FEYIGNTRAVDIMVQRLRKKLGSSG--EYIKTIYGVGYKLD 222 >gi|30263549|ref|NP_845926.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|42782670|ref|NP_979917.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|47528946|ref|YP_020295.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|47567882|ref|ZP_00238589.1| two-component response regulator [Bacillus cereus G9241] gi|49186400|ref|YP_029652.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|49477754|ref|YP_037680.1| transcriptional regulatory protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52141934|ref|YP_084893.1| transcriptional regulatory protein [Bacillus cereus E33L] gi|118478844|ref|YP_895995.1| transcriptional regulatory protein [Bacillus thuringiensis str. Al Hakam] gi|165870959|ref|ZP_02215610.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167636464|ref|ZP_02394762.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|167640572|ref|ZP_02398834.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170688455|ref|ZP_02879663.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|170708146|ref|ZP_02898593.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|177652476|ref|ZP_02934943.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190564567|ref|ZP_03017488.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|196034040|ref|ZP_03101450.1| DNA-binding response regulator [Bacillus cereus W] gi|196038467|ref|ZP_03105776.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|196044699|ref|ZP_03111934.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|206975347|ref|ZP_03236260.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217961002|ref|YP_002339570.1| DNA-binding response regulator [Bacillus cereus AH187] gi|218904728|ref|YP_002452562.1| DNA-binding response regulator [Bacillus cereus AH820] gi|222097054|ref|YP_002531111.1| transcriptional regulatory protein [Bacillus cereus Q1] gi|225865582|ref|YP_002750960.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|227813568|ref|YP_002813577.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228916230|ref|ZP_04079800.1| Two-component response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228928652|ref|ZP_04091688.1| Two-component response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228934872|ref|ZP_04097703.1| Two-component response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228947215|ref|ZP_04109509.1| Two-component response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228986689|ref|ZP_04146819.1| Two-component response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229123117|ref|ZP_04252324.1| Two-component response regulator [Bacillus cereus 95/8201] gi|229140213|ref|ZP_04268771.1| Two-component response regulator [Bacillus cereus BDRD-ST26] gi|229157173|ref|ZP_04285253.1| Two-component response regulator [Bacillus cereus ATCC 4342] gi|229185835|ref|ZP_04313008.1| Two-component response regulator [Bacillus cereus BGSC 6E1] gi|229197708|ref|ZP_04324428.1| Two-component response regulator [Bacillus cereus m1293] gi|229604587|ref|YP_002867793.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|254686167|ref|ZP_05150026.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254726066|ref|ZP_05187848.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254738640|ref|ZP_05196343.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254744802|ref|ZP_05202480.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254752958|ref|ZP_05204994.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|254759230|ref|ZP_05211256.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|301055087|ref|YP_003793298.1| DNA-binding response regulator [Bacillus anthracis CI] gi|30258184|gb|AAP27412.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|42738596|gb|AAS42525.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|47504094|gb|AAT32770.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|47555360|gb|EAL13704.1| two-component response regulator [Bacillus cereus G9241] gi|49180327|gb|AAT55703.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|49329310|gb|AAT59956.1| transcriptional regulatory protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51975403|gb|AAU16953.1| transcriptional regulatory protein [Bacillus cereus E33L] gi|118418069|gb|ABK86488.1| transcriptional regulatory protein [Bacillus thuringiensis str. Al Hakam] gi|164713170|gb|EDR18696.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167511440|gb|EDR86824.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|167528123|gb|EDR90915.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170126954|gb|EDS95834.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|170667625|gb|EDT18380.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|172082150|gb|EDT67217.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190563884|gb|EDV17848.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|195993114|gb|EDX57072.1| DNA-binding response regulator [Bacillus cereus W] gi|196024734|gb|EDX63406.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|196030875|gb|EDX69473.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|206746249|gb|EDZ57643.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217065228|gb|ACJ79478.1| DNA-binding response regulator [Bacillus cereus AH187] gi|218538759|gb|ACK91157.1| DNA-binding response regulator [Bacillus cereus AH820] gi|221241112|gb|ACM13822.1| transcriptional regulatory protein [Bacillus cereus Q1] gi|225789063|gb|ACO29280.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|227007659|gb|ACP17402.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228585785|gb|EEK43883.1| Two-component response regulator [Bacillus cereus m1293] gi|228597547|gb|EEK55194.1| Two-component response regulator [Bacillus cereus BGSC 6E1] gi|228626237|gb|EEK82984.1| Two-component response regulator [Bacillus cereus ATCC 4342] gi|228643299|gb|EEK99572.1| Two-component response regulator [Bacillus cereus BDRD-ST26] gi|228660411|gb|EEL16044.1| Two-component response regulator [Bacillus cereus 95/8201] gi|228773020|gb|EEM21456.1| Two-component response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228812462|gb|EEM58789.1| Two-component response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228824772|gb|EEM70573.1| Two-component response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228830971|gb|EEM76572.1| Two-component response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228843428|gb|EEM88506.1| Two-component response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229268995|gb|ACQ50632.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|300377256|gb|ADK06160.1| DNA-binding response regulator [Bacillus cereus biovar anthracis str. CI] Length = 225 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 53/225 (23%), Positives = 98/225 (43%), Gaps = 10/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L++D +++ F ++G + + L + D+ ++ L Sbjct: 6 LLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELFAEHEIDLIMLDIML--PEIDGWS 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR S VP+I ++ TL F+ G D+ V KP + ++AR + +R Sbjct: 64 VCRRIRKESAVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGV 123 Query: 123 NNRAETGPI-----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 AE + V R V GE L +E +L YLM N+G +++ + + Sbjct: 124 VGVAEENAMSLAGIEVNRLSRTVLVDGEEIILTHKEFELLVYLMENKGIVLSRQHLLDQL 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +G +D ++ V++HI KLR KL +K + + +GY + Sbjct: 184 WG-YDYYGDDRTVDTHIKKLRNKLGDK--AKHIGTVIRVGYKFEE 225 >gi|323496468|ref|ZP_08101526.1| putative two-component response regulator [Vibrio sinaloensis DSM 21326] gi|323318745|gb|EGA71698.1| putative two-component response regulator [Vibrio sinaloensis DSM 21326] Length = 235 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 47/226 (20%), Positives = 89/226 (39%), Gaps = 11/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ G G + G + D+ ++ GE Sbjct: 6 ILVVDDNQELREALSDYLGRAGFEVLGAENGRAMWQTLQHTTPDLIILDIM--MPGEDGF 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R +R SQ+P+I ++ + + G DD + K RE+LAR+ I RR + Sbjct: 64 CLCRQLRQDSQIPIIMLTAVTEEADRVAGLEMGADDYITKSFSPRELLARIKTILRRSQP 123 Query: 122 SNNRAETGPIRVFSDGRDPEVQG-------EVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N ++ D + +V L + +L ++N +++ I Sbjct: 124 DNQIQLKRRVKFDDWHLDMVTRQLSSPGSKQVKQLSGADLSLLGLFVSNAKAILSRDDIA 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I+G D E ++ IS+LR+ L +K + + R GY + Sbjct: 184 REIWGR-DAEPFERGIDVQISRLRQHLEDK-DRSLILTVRNKGYML 227 >gi|300853845|ref|YP_003778829.1| putative transcriptional regulator [Clostridium ljungdahlii DSM 13528] gi|300433960|gb|ADK13727.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM 13528] Length = 229 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 40/226 (17%), Positives = 86/226 (38%), Gaps = 11/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + + ++ ++ + + ++ L + Sbjct: 6 ILVIEDDEEINNLIYNTLKNENYNIVQAFDGKDALEKYD-NTFQLIILDLML--PYIDGI 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115 E+ R IR +S VP+I +S + G DD + KP RE+ R Sbjct: 63 EVLRKIRENSTVPVIILSAKNEETDRVIGLSMGADDYMIKPFSTRELAARVKAQLRRYIY 122 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 Y + N +++ + + + L +E +L++ + N + K QIF+ Sbjct: 123 YNNVHDKNPTLTYKSLKLDTSNHKFFKEDKELNLTPKEFELLKFFLKNPDRVFTKAQIFN 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++ D ++N V HI +LR K+ + + + +GY + Sbjct: 183 GVW-ENDYLHDDNTVMVHIKRLRNKIEDNPNNPKYIVTVWGIGYKL 227 >gi|261369014|ref|ZP_05981897.1| phosphate regulon response regulator PhoB [Subdoligranulum variabile DSM 15176] gi|282568888|gb|EFB74423.1| phosphate regulon response regulator PhoB [Subdoligranulum variabile DSM 15176] Length = 230 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 43/226 (19%), Positives = 85/226 (37%), Gaps = 9/226 (3%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEK 59 M +++D A +++ +G G + D+ ++ L G + Sbjct: 1 MIYIVEDDASIRELEQYALQTNGYEATGCEDGASFWAALRESAPDLVILDVMLPDEDGYQ 60 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAA 114 +L R A +P+I ++ S + D G DD + KP E ++R A Sbjct: 61 ILNKLRADPATRTIPVIMVTAKTSEIDVVKGLDHGADDYLCKPFGIMEFISRVKAVLRRA 120 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + G I + R V G L +E +L + + + +A+ +I Sbjct: 121 QAAAPAPAPKTLTFGAIVMDDVARTVRVDGAPVELTFKEYALLHLFLEHPEQVLARERIM 180 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ D +E ++ H+ LR+KL + + R +GY + Sbjct: 181 KEVWDTDDL-LESRTIDMHVRTLRQKLGAAGES--IRTVRKVGYKL 223 >gi|168178370|ref|ZP_02613034.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|226948239|ref|YP_002803330.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] gi|182670982|gb|EDT82956.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|226841050|gb|ACO83716.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] Length = 240 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 43/227 (18%), Positives = 91/227 (40%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 ++IDD + + +G + +LE + D+ ++ L + Sbjct: 11 ILIIDDEEDIVRLIRTVLKKEGFQNIYYATNLEDGFKEFNKVEPDIVILDIML--PDGEG 68 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI------HHREILARVAA 114 EL + IRA S+VP++ +S + F G DD + KP + + R + Sbjct: 69 YELCKTIRAKSKVPILFLSAKGEEIDKILGFAIGGDDYITKPFSTKELAYRVKAHLRRYS 128 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N GP + + + +G + L +E ++ + + + ++K +I Sbjct: 129 YVENASEEKNILSFGPFELNISKGEFKKEGRLIELKPKELALIAFFAKHPNQIISKEKIC 188 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++G D +N + HI +LR+K+ + + + + LGY + Sbjct: 189 DNVWGE-DYYGFDNTIMVHIRRLREKIEKEPSKPEYLINVKGLGYKL 234 >gi|70730633|ref|YP_260374.1| DNA-binding response regulator [Pseudomonas fluorescens Pf-5] gi|68344932|gb|AAY92538.1| DNA-binding response regulator [Pseudomonas fluorescens Pf-5] Length = 233 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 38/226 (16%), Positives = 89/226 (39%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + + + +G + + + ++ D+ ++ L G L Sbjct: 4 ILLVEDDTALSELIASYLERNGYQVSVISRGDQVRERAKASPPDLVILDLML--PGLDGL 61 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAI 115 ++ R++RA S P++ ++ + + G DD V KP R + Sbjct: 62 QVCRLLRADSATLPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLLRRSS 121 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + ++++ G + + R + ++ L E +L L + G+ +++ QI Sbjct: 122 LSEPQSASDQILMGNLCIDLSERTVTWREQLVELSSGEYNLLVVLARHAGEVLSRDQILQ 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220 + G+ + + V+ ISKLR+K + + + GY Sbjct: 182 RLRGI-EFNGTDRSVDVAISKLRRKFDDHAGEARKIKTVWGKGYLF 226 >gi|300811605|ref|ZP_07092085.1| Transcriptional regulatory protein WalR [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300497400|gb|EFK32442.1| Transcriptional regulatory protein WalR [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 242 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 45/233 (19%), Positives = 93/233 (39%), Gaps = 19/233 (8%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G +E E D+ ++ L + L Sbjct: 5 ILVVDDEKPISDIIKFNLTKEGFDVETAYDGEEAVEKVEEYNPDLMILDLML--PKKDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-------- 113 E+ R +R +P+I ++ + + G DD V KP +RE++ARV Sbjct: 63 EVAREVRQTHDMPIIMVTAKGGEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRSRDI 122 Query: 114 -------AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166 + + +N + G + + D E GE L RE +L Y+ + + Sbjct: 123 VKKAVEVNQQKEKEQESNDIQIGNLLIKPDAYLVEKNGEKIELTHREFELLYYMAQHMDQ 182 Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGY 218 + + + ++G +D + V+ + +LR+K+ + + ++R +GY Sbjct: 183 VMTREHLLQTVWG-YDYFGDVRTVDVTVHRLREKIEDNPVRPKILVTRRGVGY 234 >gi|225867234|ref|YP_002752612.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|225788675|gb|ACO28892.1| DNA-binding response regulator [Bacillus cereus 03BB102] Length = 223 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 42/226 (18%), Positives = 89/226 (39%), Gaps = 12/226 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +++ +G + + DV ++ L Sbjct: 3 ILVVDDESSIRNLIRMQLEMEGYEVLTAADGRAALERWNEG-PDVLILDVML--PDTDGY 59 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL R+ R +P++ ++ + L G DD V KP ++ E++ RV + RR+K Sbjct: 60 ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRVK 119 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEV-----FPLPRRERRILEYLMANRGKRVAKTQIFS 175 + I P+ + L RE + + ++N + + ++ Sbjct: 120 KAEVTVSHEVIEAGEITICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 179 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G F+ V+ + +LRKKL N + + + +GY +D Sbjct: 180 KVWG-FEYIGNTRAVDIMVQRLRKKLGNSG--EYIKTIYGVGYKLD 222 >gi|218886726|ref|YP_002436047.1| two component transcriptional regulator, winged helix family [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757680|gb|ACL08579.1| two component transcriptional regulator, winged helix family [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 275 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 45/233 (19%), Positives = 87/233 (37%), Gaps = 17/233 (7%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ G E + R D+ ++ L G+ L Sbjct: 7 ILVVDDDPEIRALLTGYLDKHGFRAESAADGSEMFRMLEVGRYDLVVLDVML--PGDDGL 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R +RA S++P+I ++ + + G DD V KP + RE++AR+ + RR + Sbjct: 65 TLCRKLRARSELPVIMLTALDDDTDRIIGLELGADDYVAKPFNPRELVARIRTVLRRARA 124 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF-------------PLPRRERRILEYLMANRGKRV 168 S L E R+L + + + + Sbjct: 125 LPENIAKAEPEAMSRTIRFAGWTLDTVPRHLVAPDGVVVNLSGAEYRLLRFFLKYPNRVM 184 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 ++ Q+ G EA + ++ +S+LR +LR+ + + R GY + Sbjct: 185 SRDQLLDLTQGRAAEAFD-RSIDVLVSRLRTRLRDNGREPQIIKTVRGDGYYL 236 >gi|167031376|ref|YP_001666607.1| DNA-binding response regulator CreB [Pseudomonas putida GB-1] gi|166857864|gb|ABY96271.1| two component transcriptional regulator, winged helix family [Pseudomonas putida GB-1] Length = 226 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 55/219 (25%), Positives = 95/219 (43%), Gaps = 5/219 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A + D + DG S E Q D+ ++ L Sbjct: 4 ILIVEDEAAIADTLLYALQADGHSTEWVTLGSAALDQQRQRPADLIILDIGL--PDISGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E R +R ++VP++ +S + + G DD V KP RE+ ARV AI +R+ Sbjct: 62 ETCRQLRRFTEVPVMFLSARDGEIDRVVGLEIGADDYVVKPFSPREVAARVRAILKRMAP 121 Query: 122 SNNRAETGP-IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 A ++ + + + L R E R+L+ L+ + ++ Q+ A+ G+ Sbjct: 122 RAEPATVAALFQLDTLRMQITYRSQPLTLTRHEFRLLQCLLEQPQRVFSREQLLDAL-GV 180 Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGY 218 + E ++SHI LR KLR G +P+ + R LGY Sbjct: 181 ASDVGYERTIDSHIKSLRAKLRQVASGGEPIQTHRGLGY 219 >gi|149377685|ref|ZP_01895421.1| Phosphate regulon transcriptional regulatory protein phoB [Marinobacter algicola DG893] gi|149358038|gb|EDM46524.1| Phosphate regulon transcriptional regulatory protein phoB [Marinobacter algicola DG893] Length = 230 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 43/221 (19%), Positives = 90/221 (40%), Gaps = 5/221 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVL 61 +++DD A +++ L + D+ ++ L G G ++ Sbjct: 7 LIVDDEAPIREMIAVALEMADYDYLEAADAREAHALIVDKQPDLILLDWMLPGTSGVELA 66 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + A +++P+I ++ + + G DD + KP RE++AR+ A+ RR Sbjct: 67 RRLKKEEATAEIPIIMLTAKVEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRRTTP 126 Query: 122 SNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + G + + E R+L++ M ++ + ++Q+ ++G Sbjct: 127 PGVETPIEVDGLTLDPVGHRVTTETGALNIGPTEYRLLQFFMTHQERVYTRSQLLDQVWG 186 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + VEE V+ HI +LRK L ++ + + R GY Sbjct: 187 -GNVYVEERTVDVHIRRLRKALGDQYDH-LIQTVRGTGYRF 225 >gi|197119976|ref|YP_002140403.1| winged-helix heavy metal transcriptional response regulator [Geobacter bemidjiensis Bem] gi|197089336|gb|ACH40607.1| winged-helix heavy metal transcriptional response regulator [Geobacter bemidjiensis Bem] Length = 224 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 46/223 (20%), Positives = 96/223 (43%), Gaps = 5/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + ++G S++ N E L + + ++ L +G Sbjct: 3 ILIVEDEQKAANYLKKGLSENGFSVDIANDGEDGLHLALTEVYSLIILDVMLPIRG--GW 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119 + + +RA P+I +S + + + G DD + KP E+LAR+ I R Sbjct: 61 SIIKELRAAGNDVPVIFLSARDEVHDRVHGLELGADDYLVKPYAFSELLARIRIILRRYP 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + + + G L +E ++L ++ RG+ +++T I I+G Sbjct: 121 LQQSESMKLADLELDLIRHKARRGGRSLDLTVKEFQLLALMLHRRGEVLSRTTISEQIWG 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + + + NVV+ I +LRKK+ + + + R +GY +D Sbjct: 181 I-NFDTDTNVVDVAIRRLRKKVDDPFPVKLIQTIRGVGYVLDE 222 >gi|150017826|ref|YP_001310080.1| two component transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149904291|gb|ABR35124.1| two component transcriptional regulator, winged helix family [Clostridium beijerinckii NCIMB 8052] Length = 227 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 49/223 (21%), Positives = 93/223 (41%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D V D A +G + + + R D+ ++ L Sbjct: 4 ILIIEDEKSVSDVVKAYLEREGYGVYSTENGLDGIEVFRKERIDLVILDLML--PDIDGE 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ +I+R S V + ++ +L ++ + G D+ + KP+ RE+ ARV A++RR+ Sbjct: 62 EVCKILRKISDVYIFMLTAKSTLSDKIEGLNIGADEYLTKPLSPRELTARVNALFRRVGC 121 Query: 122 SNNR---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + D R ++ GE L E IL L +N+GK + I + Sbjct: 122 KKENVISFNDNKLIIDVDKRLVKLSGEEINLTPNEFDILYILASNQGKVFTREAIIERAF 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 G+ + + ++ HI LRKK+ + + +GY Sbjct: 182 GM-EFDGSDRSIDVHIKNLRKKIEEDTKSPQYIVTVTKIGYKF 223 >gi|307701723|ref|ZP_07638737.1| putative Sensory transduction protein regX3 [Mobiluncus mulieris FB024-16] gi|307612981|gb|EFN92236.1| putative Sensory transduction protein regX3 [Mobiluncus mulieris FB024-16] Length = 229 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 54/228 (23%), Positives = 93/228 (40%), Gaps = 14/228 (6%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 M ++D ++D + G G G + + R ++ ++ L G Sbjct: 1 MIYFVEDDRNIRDLVVYTLGSTGFEAFGCEDDKAFRAEMAKTRPELVLLDIML--PGTDG 58 Query: 61 LELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 +++ R ++A +P+I ++ + + D G DD V KP E+++RV A+ R Sbjct: 59 IQILRRLKADRSTADIPIIMVTARGAEFEKVKSLDLGADDYVTKPFGMMELVSRVRAVLR 118 Query: 118 RLKVSNNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 R S + I V GE L +E ++LE LM G ++ Sbjct: 119 RSSRSTQDSVEEEILTLGSISLNLSRHAVMVNGETVTLTLKEYQLLEELMTQPGFIFSRD 178 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 Q+ +I+G + E V+ HI LRKKL V + R +GY Sbjct: 179 QLLDSIWG-YSFHGETRTVDVHIRTLRKKLGE--AAKYVKTVRGVGYK 223 >gi|241889810|ref|ZP_04777108.1| transcriptional regulatory protein SrrA [Gemella haemolysans ATCC 10379] gi|241863432|gb|EER67816.1| transcriptional regulatory protein SrrA [Gemella haemolysans ATCC 10379] Length = 238 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 44/231 (19%), Positives = 87/231 (37%), Gaps = 14/231 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD ++ I +G ++ ++ ++ L Sbjct: 5 ILIIDDEERIRKLLIMYLEKEGYIVDEASNGHDGLERLKYMDYSCVLLDVQLPM--LNGK 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + +R P+I +S Q+ ++ F+ G DD V KP RE++ R+ AI +R K Sbjct: 63 SILSELRKTKATPVIIMSAQADEQSRVEGFELGADDYVVKPFSPRELMLRINAILQRTKR 122 Query: 122 SNNRAE---------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 S + + + V L +E +L +L + K + + Sbjct: 123 SVFYTPELYAKDVLVFPGLIIDVNSHKVIVDDTEVLLTPKEFDLLLFLAKSPDKAFKRNE 182 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG--FDPVDSKRFLGYSID 221 I A++ +D + V++HI ++RKK + + +GY D Sbjct: 183 ILRAVWD-YDFYSDLRTVDTHIKRVRKKFDKISPIVAQMIVTVWGIGYKFD 232 >gi|288942284|ref|YP_003444524.1| winged helix family two component transcriptional regulator [Allochromatium vinosum DSM 180] gi|288897656|gb|ADC63492.1| two component transcriptional regulator, winged helix family [Allochromatium vinosum DSM 180] Length = 233 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 50/222 (22%), Positives = 85/222 (38%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + G ++ R D+ ++ L G+ L Sbjct: 9 ILIVEDEERLARLVADYLRAAGHRVQHLAEGTGVAAWVRRERPDLILLDLML--PGKDGL 66 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R IR SQVP+I + L + G DD V KP RE++ARV A+ RR Sbjct: 67 DICREIRTESQVPIIMTTARVEEIDRLLGLELGADDYVCKPYSPRELVARVKAVLRRTLA 126 Query: 122 SNNRAETGPIRVFSD-GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 A + L E +LE L G+ ++ ++ IY Sbjct: 127 PEPPAADPGPLHLHRDELRVRAGDDEIELTAVEFALLETLHGAPGRIFSRDRLMDRIY-R 185 Query: 181 FDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221 V + ++SH+ KLR+KL + + S +GY + Sbjct: 186 DHRVVSDRTIDSHVKKLRRKLAELVPDQELIHSVYGVGYRYE 227 >gi|225028286|ref|ZP_03717478.1| hypothetical protein EUBHAL_02558 [Eubacterium hallii DSM 3353] gi|224954332|gb|EEG35541.1| hypothetical protein EUBHAL_02558 [Eubacterium hallii DSM 3353] Length = 225 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 42/223 (18%), Positives = 80/223 (35%), Gaps = 12/223 (5%) Query: 6 DDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPR 65 DD +++ L G +G +E + + + D+ ++ G + R Sbjct: 2 DDNPEIREIIQVLLGGEGYLVETAGNGVKALEMLENREYDLIILDIM--MPGMDGYQTCR 59 Query: 66 IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARVAAIY 116 +R S P++ +S F SG DD + KP + E +V Sbjct: 60 KMREESNAPILFLSARTKDSDKTLGFSSGGDDYLAKPFSYNELISRAKALIRRYQVYKGK 119 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + V + + G++ L E IL L+ NR + + +++ A Sbjct: 120 AEKVETPKNFSCKNLVVAEETKSVYSDGQLLELTDTEYAILLLLLKNRRQVFSTERLYEA 179 Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218 ++ EN V HI LR+K+ + + + GY Sbjct: 180 VWKENFYYGAENTVMVHIRNLRRKVERDSKNPMIIKTSWGKGY 222 >gi|212635951|ref|YP_002312476.1| transcriptional regulatory protein [Shewanella piezotolerans WP3] gi|212557435|gb|ACJ29889.1| Response regulator receiver:Transcriptional regulatory protein [Shewanella piezotolerans WP3] Length = 227 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 44/224 (19%), Positives = 95/224 (42%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++I+D + + G ++ + + +L + ++ L G V Sbjct: 3 ILVIEDNLTTRQYLQKALKEQGYEIDLAENGQDGLFLALEGDYQLILLDRMLPKLDGLTV 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L R A Q P++ +S S+ + G DD + KP E+L R+ + +R Sbjct: 63 LTTLR--NAGKQTPVLILSALDSVSERVKGLREGSDDYLIKPFALSELLVRIEILIQRKG 120 Query: 121 VSNNRAETGPIRVFSD----GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 ++++ R L +E ++L YLM + G+ V+++ +F A Sbjct: 121 SNSDKQTNVLQVADLKMELLSRKVFRGKNEVILQPKEFKLLRYLMEHSGQVVSRSLLFEA 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ + + NV++ H+++LRKK+ +++ R +GY + Sbjct: 181 VWD-YQFDPQTNVIDVHMARLRKKVEFDGLPSLLETVRGVGYRM 223 >gi|188590060|ref|YP_001921679.1| transcriptional regulatory protein ResD [Clostridium botulinum E3 str. Alaska E43] gi|188500341|gb|ACD53477.1| transcriptional regulatory protein ResD [Clostridium botulinum E3 str. Alaska E43] Length = 223 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 44/222 (19%), Positives = 98/222 (44%), Gaps = 7/222 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D ++ DG ++ + E + S + D+ ++ LE Sbjct: 6 LIVEDELKIRFLIRDYLLKDGFNIFEASDGEEGLFQFSKEKIDLIILDIM--MPKMNGLE 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRLK 120 + +R S VP+I ++ + L+ ++ G DD + KP + ++A+V A R Sbjct: 64 MLEKLREVSNVPVIFLTARGEEEDKLEGYEFGADDYMTKPFSPKVLVAKVKALLKRTRED 123 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + ++ + V + +V + L +E +L YL+ N +++ I ++G+ Sbjct: 124 LDSSIQNFNGLSVNQLSHEVKVNDNIILLSPKEYELLIYLINNESIALSRDNILDNVWGI 183 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 D + V+++I +LR+KL +K + + R GY + Sbjct: 184 -DYYGDIRTVDTNIKRLREKLLDKSS--YIVTVRGSGYKFEV 222 >gi|217962746|ref|YP_002341322.1| DNA-binding response regulator [Bacillus cereus AH187] gi|229141995|ref|ZP_04270520.1| DNA-binding response regulator [Bacillus cereus BDRD-ST26] gi|217065523|gb|ACJ79773.1| DNA-binding response regulator [Bacillus cereus AH187] gi|228641284|gb|EEK97590.1| DNA-binding response regulator [Bacillus cereus BDRD-ST26] Length = 223 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 40/226 (17%), Positives = 87/226 (38%), Gaps = 12/226 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +++ +G + + DV ++ L Sbjct: 3 ILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEG-PDVLILDVML--PDTDGY 59 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL R+ R +P++ ++ + L G DD V KP ++ E++ RV + RR+ Sbjct: 60 ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRVN 119 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEV-----FPLPRRERRILEYLMANRGKRVAKTQIFS 175 I P+ + L RE + + ++N + + ++ Sbjct: 120 KKEVTVSYEVIGAGEITICPKERKVHVSGQEVQLTYREFNLCQLFVSNPQRVFMRDELLE 179 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G F+ V+ + +LRKKL + + + + +GY +D Sbjct: 180 KVWG-FEYIGNTRAVDIMVQRLRKKLGSSG--EYIKTIYGVGYKLD 222 >gi|120610269|ref|YP_969947.1| osmolarity response regulator [Acidovorax citrulli AAC00-1] gi|326316447|ref|YP_004234119.1| winged helix family two component transcriptional regulator [Acidovorax avenae subsp. avenae ATCC 19860] gi|120588733|gb|ABM32173.1| two component transcriptional regulator, winged helix family [Acidovorax citrulli AAC00-1] gi|323373283|gb|ADX45552.1| two component transcriptional regulator, winged helix family [Acidovorax avenae subsp. avenae ATCC 19860] Length = 243 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 44/230 (19%), Positives = 93/230 (40%), Gaps = 14/230 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++D +G + + + ++ ++ GE L Sbjct: 11 ILVVDDDARIRDLLRRYLTQEGFEVMVAEDGKALNRILLRETVELIVLDLM--MPGEDGL 68 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R +R A+ + P+I ++ + + G DD + KP + RE+LAR+ A+ RR Sbjct: 69 SICRRLRAANDRTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARIHAVLRRRP 128 Query: 121 VS---------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 N GP R + GE PL E +L+ L+ + + +++ Sbjct: 129 PQEAPGAPSGDNEVVTFGPFTFDLGTRALQKNGEELPLTTGEFAMLKALVRHPRQPLSRE 188 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++ G + + ++ +S+LRK + + + + +GY Sbjct: 189 KLALLARGR-EFEPFDRSLDVQVSRLRKLVEVDAAAPRYIQTVWGVGYVF 237 >gi|296271218|ref|YP_003653850.1| winged helix family two component transcriptional regulator [Thermobispora bispora DSM 43833] gi|296094005|gb|ADG89957.1| two component transcriptional regulator, winged helix family [Thermobispora bispora DSM 43833] Length = 229 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 44/221 (19%), Positives = 87/221 (39%), Gaps = 7/221 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D +++ G + + EW + +R D+ ++ L L Sbjct: 8 LVVEDDPGIRELLREGLRHAGFEVIATATGREAEWQANRSRPDLVLLDVML--PDIDGLL 65 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRRL 119 L + + + DD V KP E++AR+ R Sbjct: 66 LAERLVHAIGPVPVVFVTARDSTADKVAGLARGDDYVTKPFRMEELIARIQAVLRRSRGW 125 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 R + + + R+ G L E R+L Y M N+G+ ++K QI ++ Sbjct: 126 DAPRPRLTVADLELDEETREVWRAGRPIRLSPTEFRLLRYFMINQGRVLSKAQILDHVW- 184 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D + N+VES++S LR+K+ + + + R +GY + Sbjct: 185 NYDFRGDANIVESYVSYLRRKI-DTTEPKLIHTLRGVGYVL 224 >gi|237786475|ref|YP_002907180.1| two-component system response regulator [Corynebacterium kroppenstedtii DSM 44385] gi|237759387|gb|ACR18637.1| two-component system, response regulator [Corynebacterium kroppenstedtii DSM 44385] Length = 228 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 47/227 (20%), Positives = 94/227 (41%), Gaps = 11/227 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D+ + + L +G + S + ++ L G E Sbjct: 5 LIVEDQETLSEPLAFLLRKEGFDVIIAPDGPTGLREFSQHEISIVLLDLML--PGMSGTE 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARVAAI 115 + + +R S VP+I ++ + + + G DD V KP R +L R Sbjct: 63 VCKKLRQSSTVPIIMVTARDTEMDKIVGLELGADDYVTKPYSARELIARIRAVLRRGRGT 122 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + E G +R+ + V G+ +P +E +LEYLM N G+ + + Q+ Sbjct: 123 SGPDQFDDEILEVGNVRMDVERHSVWVDGKEISMPLKEFDLLEYLMRNEGRVLTRGQLID 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221 ++GL D + ++ H+ +LR K+ + + + R LGY + Sbjct: 183 RVWGL-DYVGDTKTLDVHVKRLRSKVEDDPSHPHHLITVRGLGYKFE 228 >gi|11465394|ref|NP_045215.1| Ycf27 [Cyanidium caldarium] gi|14548002|sp|Q9TLQ4|YCF27_CYACA RecName: Full=Probable transcriptional regulator ycf27; AltName: Full=OmpR-like protein gi|6466297|gb|AAF12879.1|AF022186_1 unknown [Cyanidium caldarium] Length = 249 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 46/231 (19%), Positives = 96/231 (41%), Gaps = 16/231 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ G S+ + E + ++ D+ ++ Sbjct: 14 LLIVDDENNIRKILQTRLTLLGYSVSTACNGEEALKIFTTHSIDLIILDVM--MPKLDGY 71 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + IR S +P+I ++ + + + G DD V KP RE+ AR+ +I RR++ Sbjct: 72 GVCQEIRKESDIPIIMLTALEDVLDKVTGLELGADDYVIKPFSPRELEARIQSILRRIQT 131 Query: 122 SNNRAETGPI---------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 N + + + + + E+ L E +LE L++ GK ++++ Sbjct: 132 RNAKLKPYDNINLFKTGSLNIDLEKKQIYKNNELIRLTEMEFSLLELLVSQSGKAFSRSK 191 Query: 173 IFSAIYG----LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGY 218 I ++G + + +V+ HIS+LR KL + + + R GY Sbjct: 192 ILKEVWGYKLSKHEPIADTRIVDVHISRLRAKLEDDPTNPTLILTARGTGY 242 >gi|309778806|ref|ZP_07673579.1| DNA-binding response regulator BaeS [Ralstonia sp. 5_7_47FAA] gi|308922514|gb|EFP68138.1| DNA-binding response regulator BaeS [Ralstonia sp. 5_7_47FAA] Length = 219 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 45/222 (20%), Positives = 85/222 (38%), Gaps = 5/222 (2%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 M ++I+D + E ++ ++ L G+ Sbjct: 1 MILIIEDEPKLAALMTDYLHAAHYETEWLADGTHATQRVRETAPELVLLDLML--PGKDG 58 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ R +RA S+VP++ ++ L + G DD V KP RE+ R Sbjct: 59 LEICREVRAFSEVPIVMVTARVEEIDRLLGLELGADDYVCKPFSPREL-VARIKTILRRV 117 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + + ++G+ L E R+L L G+ ++++ + IY Sbjct: 118 QRGGGVPESALHIDAAAYAATLRGQRLDLTPVEFRLLAALAGAPGRILSRSNLLEQIYDD 177 Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 V + V++HI LR+K+ G + + S +GY +D Sbjct: 178 H-RIVTDRTVDTHIKNLRRKMEQVSPGTEMIHSVYGVGYRLD 218 >gi|301056729|ref|YP_003794940.1| DNA-binding response regulator [Bacillus anthracis CI] gi|300378898|gb|ADK07802.1| DNA-binding response regulator [Bacillus cereus biovar anthracis str. CI] Length = 223 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 42/226 (18%), Positives = 89/226 (39%), Gaps = 12/226 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +++ +G + + DV ++ L Sbjct: 3 ILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEG-PDVLILDVML--PDTDGY 59 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL R+ R +P++ ++ + L G DD V KP ++ E++ RV + RR+K Sbjct: 60 ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRVK 119 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEV-----FPLPRRERRILEYLMANRGKRVAKTQIFS 175 + I P+ + L RE + + ++N + + ++ Sbjct: 120 KTEVTVSHEVIEAGEITICPKERKVHVGGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 179 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G F+ V+ + +LRKKL N + + + +GY +D Sbjct: 180 KVWG-FEYIGNTRAVDIMVQRLRKKLGNSG--EYIKTIYGVGYKLD 222 >gi|297530122|ref|YP_003671397.1| two component transcriptional regulator, winged helix family [Geobacillus sp. C56-T3] gi|297253374|gb|ADI26820.1| two component transcriptional regulator, winged helix family [Geobacillus sp. C56-T3] Length = 226 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 46/222 (20%), Positives = 87/222 (39%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L+DD + D +G S D+ ++ Sbjct: 4 LLLVDDEERMLDLLELYLAPNGYRCVKRRSGAEAIDYLRRHHADLVLLDVM--MPELDGW 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E R IR+ S VP++ ++ + G DD V KP E+LAR+ A+ RR Sbjct: 62 ETCRRIRSFSNVPIMMVTARDETADIVQGLKIGADDYVAKPFDEAELLARIEAVLRRTAG 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + + + + L +E IL L+ + + ++ QI ++++G + Sbjct: 122 GRSAIRAAGLVWDEEEHTVRYEDKPIALTPKEFAILGLLLKHPNQVFSRGQIIASLWG-Y 180 Query: 182 DEAVEENVVESHISKLRKKLRNKL--GFDPVDSKRFLGYSID 221 EE V+SH+ +R+KLR + + + +GY + Sbjct: 181 LADTEERTVDSHMKNIREKLRKAGFPADEYLQTVWGVGYKWE 222 >gi|227550077|ref|ZP_03980126.1| response regulator [Enterococcus faecium TX1330] gi|257885994|ref|ZP_05665647.1| two-component system response regulator [Enterococcus faecium 1,231,501] gi|293568562|ref|ZP_06679881.1| regulatory protein VanR [Enterococcus faecium E1071] gi|307287256|ref|ZP_07567324.1| response regulator receiver domain protein [Enterococcus faecalis TX0109] gi|325571902|ref|ZP_08147192.1| response regulator [Enterococcus casseliflavus ATCC 12755] gi|227180794|gb|EEI61766.1| response regulator [Enterococcus faecium TX1330] gi|257821850|gb|EEV48980.1| two-component system response regulator [Enterococcus faecium 1,231,501] gi|291588736|gb|EFF20565.1| regulatory protein VanR [Enterococcus faecium E1071] gi|306501713|gb|EFM71005.1| response regulator receiver domain protein [Enterococcus faecalis TX0109] gi|325155630|gb|EGC67834.1| response regulator [Enterococcus casseliflavus ATCC 12755] Length = 226 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 45/224 (20%), Positives = 88/224 (39%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + A + S+ S D+ ++ L L Sbjct: 3 ILIVDDEEKILEIIDAYLVANHYSVYKAISGAMALEKFEKNNPDLVVLDLML--PDTDGL 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R IR S VP+I ++ L G DD + KP +E++AR+ + RR + Sbjct: 61 TVCRKIREVSNVPIIMLTAKSDEDDILTGLKLGADDYMIKPFSPKELVARIQTVLRRTET 120 Query: 122 SNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 +N + G + V+ + R + L E IL L++ K +++ + + Sbjct: 121 LSNPNKLSSSNGELIVYPESRQVYLHQVELNLTTTEFDILHALISTPNKVFSRSDLIEKV 180 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 G+ + + ++SHI LR K+ + + + GY Sbjct: 181 KGI-EFDGLDRSIDSHIKNLRHKIENDAKSPMYILTVHGTGYRF 223 >gi|219683981|ref|YP_002470364.1| response regulator of two-component system [Bifidobacterium animalis subsp. lactis AD011] gi|219621631|gb|ACL29788.1| response regulator of two-component system [Bifidobacterium animalis subsp. lactis AD011] Length = 239 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 35/229 (15%), Positives = 77/229 (33%), Gaps = 16/229 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + ++G + D+ ++ L + Sbjct: 14 ILVVEDEPTLATAIAQRLTNEGWTARVAGDGATAVKAADKLHPDLIIMDLML--PVMDGI 71 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112 E + I A +P++ ++ + G DD ++KP RE Sbjct: 72 EATKRIEAQHPIPVLMLTARDDEADVVIGLGVGADDYMSKPFSMRELVARERALLRRVDR 131 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 A + ++ + G + + R + G+ L E +L L + + Q Sbjct: 132 AKVIAHKSENDCILDFGTLVIDPAKRQVTLDGKEVHLTPTEFDLLTTLAKQPHSVLTREQ 191 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + ++ D A V+SH+ LR KL + + +GY+ + Sbjct: 192 LLEEVWDWVD-ASSTRTVDSHVKALRHKLGAST----IRTVHGVGYAFE 235 >gi|218441910|ref|YP_002380239.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] gi|218174638|gb|ACK73371.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] Length = 226 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 47/222 (21%), Positives = 95/222 (42%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + D + D +E + + L D+ ++ L + Sbjct: 3 ILLVEDDERISDAIVEDLSDQHYLVEVAHDGQEAWELVDVFSYDLILLDVML--PKMDGI 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119 L R +R+ P++ I+ +++ + D G DD + KP +E+ ARV A + R Sbjct: 61 TLCRKLRSGGCQTPILMITARDTVEDRVSGLDVGADDYLVKPFALQELSARVRALLRRGT 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + G + + Q ++ PL +E +LE+ + + + + Q+ ++ Sbjct: 121 SSLPPVLKWGDLCLDPSSCKVYYQEQLIPLSPKEYTLLEFFLRHEHRVFNRAQLLEHLW- 179 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220 F+ EE V++HI LR+KL D +++ LGY + Sbjct: 180 PFERLPEEATVKAHIRSLRQKLDAVGAPSDVIETVYGLGYRL 221 >gi|146338495|ref|YP_001203543.1| OmpR family two-component response regulator [Bradyrhizobium sp. ORS278] gi|146191301|emb|CAL75306.1| two-component response transcriptional regulator (OmpR family) [Bradyrhizobium sp. ORS278] Length = 235 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 41/224 (18%), Positives = 85/224 (37%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D ++ +G ++ + D + ++ GE L Sbjct: 7 LLIIEDDIEIRSLLRDHLAREGFRVD-VGDGGAALDRFRNTFGDPDLVVLDIMLPGEDGL 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R +RA S+VP++ ++ + + G DD + KP RE++AR+ AI RR + Sbjct: 66 SICRRLRAASRVPILMLTAKGDEIDRIVGLEMGADDYLPKPFSPRELVARIRAILRRAEP 125 Query: 122 SNNRAETGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + Q PL E +L + + +++ Q+ Sbjct: 126 APLENRRFLVNATLTVDLDKREIAHAQDGALPLTSAEFELLGCFLVRPNRVLSRDQLMDW 185 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G + ++ +S+LRKK+ + + + R GY Sbjct: 186 TRGR-QADPLDRTIDVQVSRLRKKIERDGEEELIKTVRSAGYIF 228 >gi|187925240|ref|YP_001896882.1| two component transcriptional regulator, winged helix family [Burkholderia phytofirmans PsJN] gi|187716434|gb|ACD17658.1| two component transcriptional regulator, winged helix family [Burkholderia phytofirmans PsJN] Length = 220 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 54/221 (24%), Positives = 99/221 (44%), Gaps = 9/221 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D ++ +G +G +++ E S D+ ++ L L Sbjct: 3 ILLVEDDRMIAEGVRKALRGEGFAVDWVEDGEAALSAAGSQPYDLVLLDLGL--PKRDGL 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ R +RA P++ ++ ++ + D+G DD + KP E+ AR+ A+ RR Sbjct: 61 DVLRTLRARGHALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQS 120 Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++ + + G L RE +LE L+A G ++K+Q+ +YG Sbjct: 121 GRSDSTIRHGNLTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + E + N VE +I LRKKL G + + + R LGY I Sbjct: 181 -WGEEIGSNTVEVYIHALRKKL----GAELIRNVRGLGYMI 216 >gi|300789759|ref|YP_003770050.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299799273|gb|ADJ49648.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 226 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 44/219 (20%), Positives = 88/219 (40%), Gaps = 5/219 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + A G +G +++ ++ W ++ L G Sbjct: 4 ILVVEDERRLAEALRAGLGAEGYAVDVAHNGRDALWYAGEHPYAAIVLDIML--PGLNGY 61 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-REILARVAAIYRRL 119 + R +R P++ ++ ++ D+G DD + KP + + A I R Sbjct: 62 RVCRRLRDQGDSTPILMLTAKDGEDDEIEALDTGADDFLPKPFSYGVLLSRLRALIRRGG 121 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + G + + R G L +E +L YLM G+ V K ++ ++ Sbjct: 122 ATRPGVLKLGDLELDQASRTCRRGGADITLTGKEFALLAYLMQRPGQVVTKAELLDNLWD 181 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 F + N+VE H+S LR+K+ G + + + R GY Sbjct: 182 -FAASATANLVEVHVSALRRKIDVPFGAETIRTVRGAGY 219 >gi|293603144|ref|ZP_06685578.1| two component response regulator [Achromobacter piechaudii ATCC 43553] gi|292818538|gb|EFF77585.1| two component response regulator [Achromobacter piechaudii ATCC 43553] Length = 228 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 39/221 (17%), Positives = 90/221 (40%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + D + ++ L D+ ++ L G Sbjct: 3 ILVIEDEPKLADYLKKGLSEQSHVVDLARDGVDGLHLALEGAHDLIVLDVML--PGVDGF 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120 + +RA P++ ++ +++ + + G DD + KP E+LARV A + R Sbjct: 61 GILAAVRARKNTPILMLTARDAVEDRVRGLEGGADDYLVKPFAFSELLARVQALLRRGRA 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + R + G L +E +L L+ +G+ +++T + ++ + Sbjct: 121 QEPTLLRLADLELDLASRRAQRGGRRLDLTAKEFNLLALLLRRQGQVLSRTTLAEQVWDM 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + NV++ + +LR KL + + + R +GY ++ Sbjct: 181 -NFDSDTNVIDVAVRRLRSKLDDPYDTKLLHTVRGMGYVLE 220 >gi|260752408|ref|YP_003225301.1| two component transcriptional regulator PhoB, winged helix family [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258551771|gb|ACV74717.1| two component transcriptional regulator PhoB, winged helix family [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 231 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 49/223 (21%), Positives = 93/223 (41%), Gaps = 4/223 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +L++D + + F + + L D+ ++ + G G +V Sbjct: 6 LLLVEDDDALAELLKWHFSKQNFEVVHTRDGDEALLLARENPPDIMLLDWMVEGTSGIEV 65 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 R + +P+I ++ + ++G DD V KP RE++ARV A+ RR++ Sbjct: 66 CRQLRRYPETANLPIIMLTARGEEDDRIRGLETGADDYVTKPFSPRELVARVLAVLRRIR 125 Query: 121 V--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 S + I + + G + E R+L +LM + ++ ++ I+ Sbjct: 126 PALSKEQLTYNDIEMDLVSHRVKRAGTNVSIGPTEFRLLRHLMEYPRRVFSREKLLDYIW 185 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 G D +E V+ HI +LRK L D + + R GY++D Sbjct: 186 GQ-DSDIELRTVDVHIRRLRKALNRDGLPDLIRTVRSAGYALD 227 >gi|302548596|ref|ZP_07300938.1| DNA-binding response regulator PhoP [Streptomyces hygroscopicus ATCC 53653] gi|302466214|gb|EFL29307.1| DNA-binding response regulator PhoP [Streptomyces himastatinicus ATCC 53653] Length = 234 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 42/227 (18%), Positives = 92/227 (40%), Gaps = 12/227 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A +++ A G ++ + + ++ L Sbjct: 7 LLVVEDDATLRELLSASLRLAGFAVVPVATGAQALAAVREQPPGLIVLDVML--PDFDGF 64 Query: 62 ELPRIIRAHS------QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--ILARVA 113 E+ R +R H P++ ++ + + + +G DD V KP + E + R Sbjct: 65 EVVRRLRGHHPSAAAGHPPVLFLTARDAPEDRISGLRAGGDDYVTKPFNLEELVLRIRAI 124 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + ++ R G + + D G L E +L LM N G+ ++K+Q+ Sbjct: 125 LRRTSGRQTDGRLVVGALELDPDSHQVTRDGSPVQLSPTEFSLLRVLMENAGQVLSKSQL 184 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +D ++++V S+IS LR+K+ + + + R GY + Sbjct: 185 LELVW-QYDFGGDDSIVASYISYLRRKV-DLDEPKLIHTVRGTGYVL 229 >gi|256848579|ref|ZP_05554020.1| phosphate regulon transcriptional regulatory protein PhoB [Lactobacillus coleohominis 101-4-CHN] gi|256714631|gb|EEU29611.1| phosphate regulon transcriptional regulatory protein PhoB [Lactobacillus coleohominis 101-4-CHN] Length = 244 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 39/227 (17%), Positives = 84/227 (37%), Gaps = 9/227 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + ++G + + ++ D+ + L+ + Sbjct: 18 ILVVDDDKEIVQLLEIYVRNEGYEPVSAYNGKDALTKLNTT-PDIGLVILDLMMPEMDGM 76 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------AI 115 E+ + IR S +P++ +S + + +G DD V KP + E++ARV Sbjct: 77 EVIKRIRKDSSIPILVLSAKTADMDKIQGLITGADDYVTKPFNPLEVMARVRSLLRRSEG 136 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + G++ L E IL L ++ + + IF Sbjct: 137 QMTNDQPDILNVGPLQINKDSHEVKTINGDLIQLTALEFGILYLLASHPNRVFSADDIFE 196 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221 ++ + V V H+S LR K+ G +++ +GY ++ Sbjct: 197 RVW-QQESVVSAKTVMVHVSHLRDKIEAATGGEKVIETVWGVGYKVE 242 >gi|116493790|ref|YP_805524.1| DNA-binding response regulator [Lactobacillus casei ATCC 334] gi|116103940|gb|ABJ69082.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus casei ATCC 334] Length = 228 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 41/227 (18%), Positives = 90/227 (39%), Gaps = 9/227 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + ++G S + D++ + ++ + Sbjct: 3 ILIVDDDKEIVELLSIYVKNEGYEPIQAYSGKEAITKL-VTNPDIALMILDIMMPNMSGM 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + +R SQ+P+I +S + + +G DD V KP + E++ARV ++ RR + Sbjct: 62 DVVKEVRKDSQIPIIIVSAKTADMDKIQGLITGADDYVTKPFNPLEVMARVKSLLRRSQN 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQG------EVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 E + + + L E IL L ++ + + +IF Sbjct: 122 EVTNTEPDVLEGGPLTIKKDSHEVTTLTGKQIQLTALEFGILYLLASHPNRVFSADEIFE 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 ++ + V V H+S LR K+ G +++ +GY ++ Sbjct: 182 RVW-QQESIVSAKTVMVHVSHLRDKIEEATDGEKVIETVWGVGYKVE 227 >gi|325922699|ref|ZP_08184439.1| phosphate regulon transcriptional regulatory protein PhoB [Xanthomonas gardneri ATCC 19865] gi|325546816|gb|EGD17930.1| phosphate regulon transcriptional regulatory protein PhoB [Xanthomonas gardneri ATCC 19865] Length = 229 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 84/224 (37%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++D + + D+ ++ L G L Sbjct: 5 ILIVDDEPAIRDMVAFALRKGEFEPIHAGDAREAQTAIADRVPDLILLDWML--PGTSGL 62 Query: 62 ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIY 116 +L R R S ++P+I ++ + ++GVDD V KP RE+ R Sbjct: 63 DLARRWRKESLTREIPIIMLTARGEENDRVGGLEAGVDDYVVKPFSARELLARIRAVMRR 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 R + G +R+ P+ E R+L + M + + +TQ+ Sbjct: 123 TREDDEDGSVAVGRLRIDGAAHRVFAGDAPVPIGPTEYRLLHFFMTHPERVYTRTQLLDH 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G VEE ++ HI +LRK L + V + R GY Sbjct: 183 VWGGSVY-VEERTIDVHIRRLRKTLEPFGLENMVQTVRGSGYRF 225 >gi|258515908|ref|YP_003192130.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] gi|257779613|gb|ACV63507.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] Length = 228 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 88/228 (38%), Gaps = 10/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + + +G + DV ++ L G+ Sbjct: 4 ILIIEDDLHIAELERDYLQLNGFKADIVQDGVQGLKKALPGNYDVIIVDLML--PGKDGY 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR VP++ +S + + G DD + KP E++AR+ + RR + Sbjct: 62 EIIREIREKLDVPVVVVSAKDEDVNKIRGLEYGADDYLTKPFSPGELVARIKSHIRRYER 121 Query: 122 SNNRA------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + + + G+ + RE +L +L +N G +K I Sbjct: 122 LKGNHVPSEVIIHRGLEINTASHRVYLNGQQVQMTTREYELLLFLASNPGIVFSKEHILV 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 +I+G D + V HI K+RKK+ + + +++ GY + Sbjct: 182 SIWG-DDYFGDTATVAVHIQKIRKKIEKDPSNPEFIETLWGTGYRFNK 228 >gi|91214972|ref|ZP_01251944.1| response regulator DrrA [Psychroflexus torquis ATCC 700755] gi|91186577|gb|EAS72948.1| response regulator DrrA [Psychroflexus torquis ATCC 700755] Length = 228 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 38/225 (16%), Positives = 82/225 (36%), Gaps = 13/225 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + +G + + + ++ + Sbjct: 8 ILVVDDDPDILEILSYNLNAEGYKVITAEDGVQAVKKAKKKKPHLVILDVM--MPEMDGI 65 Query: 62 ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AI 115 E IR + ++ + + FD+G DD + KP+ + ++++V Sbjct: 66 EACEQIRETKGLENTVITFLTARGEDYSQVAGFDAGADDYITKPVKPKVLMSKVKALLRR 125 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 ++ N + G I + D G LPR+E +L L + K + I + Sbjct: 126 FKSNASEKNIYKIGGIVINRDEYKISSDGIEMTLPRKEFELLSLLTSEPNKVFKRDDILN 185 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + V ++ HI KLR+KL + + + +GY Sbjct: 186 TVWGN-EVVVGGRTIDVHIRKLREKLGDDK----FKTVKGVGYKF 225 >gi|50086511|ref|YP_048021.1| positive response regulator for the pho regulon,autophosphorylates and phosphorylates sensor PhoR [Acinetobacter sp. ADP1] gi|49532487|emb|CAG70199.1| positive response regulator for the pho regulon, autophosphorylates and phosphorylates sensor PhoR [Acinetobacter sp. ADP1] Length = 236 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 39/224 (17%), Positives = 88/224 (39%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ G + + R + ++ L G G + Sbjct: 6 ILIVDDELPIREMIHTSLDMAGFQCLQAEDAKQAHQMIVDQRPALILLDWMLPG-GVSGV 64 Query: 62 ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IY 116 +L R ++ S++P+I ++ + D+G DD + KP RE+++R+ A Sbjct: 65 DLCRRLKRDENLSEIPVIMLTARGEEDHKVQGLDAGADDYMTKPFSTRELVSRIKAVLRR 124 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + + + + + + E R+L + M + + + Q+ Sbjct: 125 ANALNGDKVIDANGLILDPVSQRVSFGSNILDMGPTEYRLLAFFMTHPERAYTRAQLLDQ 184 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + +E+ ++ HI +LRK L V + R GY Sbjct: 185 VWG-GNVYIEDRTIDVHIRRLRKVLEPFGADRFVQTVRGTGYRF 227 >gi|283783078|ref|YP_003373832.1| response regulator receiver domain protein [Gardnerella vaginalis 409-05] gi|298253498|ref|ZP_06977288.1| response regulator (CheY receiver/winged-helix DNA-binding) [Gardnerella vaginalis 5-1] gi|283442136|gb|ADB14602.1| response regulator receiver domain protein [Gardnerella vaginalis 409-05] gi|297532265|gb|EFH71153.1| response regulator (CheY receiver/winged-helix DNA-binding) [Gardnerella vaginalis 5-1] Length = 250 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 35/229 (15%), Positives = 78/229 (34%), Gaps = 16/229 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + G + D+ ++ L + Sbjct: 14 ILVVEDEPDLATAIAQRITAQGWRARVATDGASAVRAAEQLKPDLIIMDIMLPI--MDGI 71 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV--------- 112 E R I + VP++ ++ + + +G DD + KP RE++AR Sbjct: 72 EATRRIISKMPVPILMLTARDAEADKIVGLSAGADDYMTKPFSPRELIARCAALLRRVER 131 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 A+ + G + + R + + E +L L + + + Sbjct: 132 ASQIAKTMEHERTINFGSLIIRPRQRLVTLNDKEVHFTPTEFDLLATLARHPHTVFKREK 191 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + ++ D + V+SHI LR K+ G + + + +GY+ + Sbjct: 192 LLEEVWDWPDASG-TRTVDSHIKSLRHKI----GSEWIRTVHGIGYAFE 235 >gi|189348833|ref|YP_001942028.1| two-component system copper resistance phosphate regulon response regulator [Burkholderia multivorans ATCC 17616] gi|189338971|dbj|BAG48038.1| two-component system copper resistance phosphate regulon response regulator [Burkholderia multivorans ATCC 17616] Length = 227 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 41/221 (18%), Positives = 90/221 (40%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + G ++ + + D+ ++ L G+ Sbjct: 3 ILIVEDEPKTGAYLRKGLTEAGYVVDWVEDGITGQHQAETEEYDLLVLDVML--PGQDGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120 L + +R P++ ++ + + + G DD + KP E+ AR+ +I R Sbjct: 61 TLLQNLRRSKSTPVLFLTARDDVGDRVKGLELGADDYLAKPFDFVELTARIKSILRRGQP 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 +N + + R QG+ L +E +L LM G+ + + I S ++ + Sbjct: 121 RDSNTLRAADLELDLTRRKATRQGDTILLTAKEFALLWLLMRREGEILPRATIASQVWDM 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + NVV+S I +LR K+ + + + R +GY ++ Sbjct: 181 -NFNSDTNVVDSAIRRLRSKIDDAYEPKLIHTVRGMGYVLE 220 >gi|56552060|ref|YP_162899.1| two component transcriptional regulator PhoB [Zymomonas mobilis subsp. mobilis ZM4] gi|4768853|gb|AAD29647.1|AF124757_7 phosphate regulatory protein PhoB [Zymomonas mobilis subsp. mobilis ZM4] gi|56543634|gb|AAV89788.1| two component transcriptional regulator PhoB, winged helix family [Zymomonas mobilis subsp. mobilis ZM4] Length = 231 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 49/223 (21%), Positives = 93/223 (41%), Gaps = 4/223 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +L++D + + F + + L D+ ++ + G G +V Sbjct: 6 LLLVEDDDALAELLKWHFSKQNFEVVHTRDGDEALLLARENPPDIMLLDWMVEGTSGIEV 65 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 R + +P+I ++ + ++G DD V KP RE++ARV A+ RR++ Sbjct: 66 CRQLRRYPETANLPIIMLTARGEEDDRIRGLETGADDYVTKPFSPRELVARVLAVLRRIR 125 Query: 121 V--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 S + I + + G + E R+L +LM + ++ ++ I+ Sbjct: 126 PALSKEQLNYNDIEMDLVSHRVKRAGTNVSIGPTEFRLLRHLMEYPRRVFSREKLLDYIW 185 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 G D +E V+ HI +LRK L D + + R GY++D Sbjct: 186 GQ-DSDIELRTVDVHIRRLRKALNRDGLPDLIRTVRSAGYALD 227 >gi|25026981|ref|NP_737035.1| putative response regulator [Corynebacterium efficiens YS-314] gi|259508536|ref|ZP_05751436.1| DNA-binding response regulator [Corynebacterium efficiens YS-314] gi|23492261|dbj|BAC17235.1| putative response regulator [Corynebacterium efficiens YS-314] gi|259163886|gb|EEW48440.1| DNA-binding response regulator [Corynebacterium efficiens YS-314] Length = 232 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 48/231 (20%), Positives = 88/231 (38%), Gaps = 14/231 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + D L +G S D+ ++ L G Sbjct: 4 ILIVEDEESLADPLAFLLRKEGFDTIIAGDGPTALVEFSRNDIDIVLLDLML--PGMSGT 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILAR 111 ++ + +R S VP+I ++ S + + G DD V KP R Sbjct: 62 DVCKELRLVSNVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLRRRGD 121 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 A + E G +R+ D V G+ +P +E +LEYL+ N G+ + + Sbjct: 122 TEAEAAEDDTDDQILEGGRVRMDVDSHTVTVDGKAVNMPLKEFDLLEYLLRNAGRVLTRG 181 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221 Q+ I+G D + ++ H+ +LR K+ + + R LGY + Sbjct: 182 QLIDRIWGA-DYVGDTKTLDVHVKRLRSKIEEEPSRPRHLVTVRGLGYKYE 231 >gi|296271227|ref|YP_003653859.1| winged helix family two component transcriptional regulator [Thermobispora bispora DSM 43833] gi|296094014|gb|ADG89966.1| two component transcriptional regulator, winged helix family [Thermobispora bispora DSM 43833] Length = 234 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 92/224 (41%), Gaps = 11/224 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + A G + ++ R D+ ++ L Sbjct: 10 LLVVEDEPNILELLSASLRYAGFEVTTASTGTEAVAAAQRRRPDLIVLDVML--PDMDGF 67 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +R SQ P++ ++ + + + G DD V KP E++AR+ A+ RR Sbjct: 68 EIVRRLRGCGSQTPVVYLTARDATEDKVRGLTLGGDDYVTKPFSLDEVIARIRAVLRRTA 127 Query: 121 VSNNRAETGPIRVFS----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + GE L E ++L +LM N G+ ++K QI Sbjct: 128 GDPYVPPPRLTFADIELDEESHEVWRGGEPIMLSPTEFKLLRFLMLNAGRVLSKGQILDH 187 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +VES++S LR+K+ +K + + R +GY + Sbjct: 188 VWDHVRGEG---IVESYVSALRRKI-DKDRPRLIHTIRGVGYVM 227 >gi|295394513|ref|ZP_06804736.1| response regulator [Brevibacterium mcbrellneri ATCC 49030] gi|294972692|gb|EFG48544.1| response regulator [Brevibacterium mcbrellneri ATCC 49030] Length = 252 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 44/236 (18%), Positives = 89/236 (37%), Gaps = 20/236 (8%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ G + + L D+ ++ L Sbjct: 14 LLVVDDEPNIRELLSTSLRFAGFDVVSAANGADALRLAEQNDPDLLVLDVML--PDMDGF 71 Query: 62 ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI----HHREILARVAAIY 116 + R + +A +P++ ++ + G DD V KP I A + + Sbjct: 72 TVTRRLRQAGKHMPVVFLTARDDTSDKITGLTVGGDDYVTKPFSLEEVVARIRAVLRRTH 131 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + G + + D + G L E ++L YLM N + ++K+QI Sbjct: 132 ALDEEDDAVLNAGDLELDDDTHEVRRAGIYIDLSPTEFKLLRYLMLNANRVLSKSQILDH 191 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFD------------PVDSKRFLGYSI 220 ++ +D + +VES+IS LR+K+ D + +KR +GY + Sbjct: 192 VW-EYDFGGDTGIVESYISYLRRKIDVAPETDEAGNPIDMEWTPMIQTKRGVGYML 246 >gi|302867454|ref|YP_003836091.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|315506136|ref|YP_004085023.1| two component transcriptional regulator, winged helix family [Micromonospora sp. L5] gi|302570313|gb|ADL46515.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|315412755|gb|ADU10872.1| two component transcriptional regulator, winged helix family [Micromonospora sp. L5] Length = 224 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 49/222 (22%), Positives = 96/222 (43%), Gaps = 8/222 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++I+D ++ ++G G + E Q D ++ L G + Sbjct: 5 LVIEDDDRIRLALQLALEEEGYEAYGAPTAEDGLRRQREKPADYVLVDLML--PGMNGFD 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 R +R VP++ IS + ++G DD V KP+ +E+ AR+ A+ RR++ Sbjct: 63 CIRQLRRDDDVPVVVISARDDTHDIVAALEAGADDYVVKPVAIKELSARLRALRRRVRTV 122 Query: 123 NNRAETGPIRVFSDG---RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + G+ P+ R E R+L L + G+ +++ Q+ S ++G Sbjct: 123 AGPVPAQFFGDLEISAEAGEVRRSGQPVPVTRTEFRLLCELAEHAGRVLSRQQLLSRVWG 182 Query: 180 LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 E +E +V+ H+ +LR+K+ + + + R LGY + Sbjct: 183 Y--ETGDERLVDVHVGRLRQKIESDPANPRHLVTLRGLGYKL 222 >gi|262371046|ref|ZP_06064368.1| transcriptional regulator [Acinetobacter johnsonii SH046] gi|262313932|gb|EEY94977.1| transcriptional regulator [Acinetobacter johnsonii SH046] Length = 228 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 45/225 (20%), Positives = 93/225 (41%), Gaps = 7/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + G + F+ + + + + ++ + L Sbjct: 4 IMLVEDEVELAQLVRDYLEAAGFEVSMFHDGQEAYDSFTQRKPSLMILDLMV--PRMDGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R +R S +P+I ++ + + G DD V KP +E++ARV A+ RRL+ Sbjct: 62 TICRKVREQSDLPIIMVTARTEEIDRVLGLNMGADDYVCKPFSPKELVARVQAVLRRLER 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + R+ + Q + L E R+LE + + G+ ++ Q+ I Sbjct: 122 KAEPEDQSLFRMDKAQQRIWYQQKPLNLTPTEFRLLELFLEHVGQVYSRAQLLDHI-NPD 180 Query: 182 DEAVEENVVESHISKLRKKLRNKLG----FDPVDSKRFLGYSIDW 222 V + V++SHI LR+K+ + + V + +GY ++ Sbjct: 181 SFEVADRVIDSHIKNLRRKISDAAETGNRHEWVQAVYGVGYRFEY 225 >gi|229824452|ref|ZP_04450521.1| hypothetical protein GCWU000282_01775 [Catonella morbi ATCC 51271] gi|229786053|gb|EEP22167.1| hypothetical protein GCWU000282_01775 [Catonella morbi ATCC 51271] Length = 231 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 44/226 (19%), Positives = 82/226 (36%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 +L+DD + D +G + + + + D+ + + G Sbjct: 4 ILLVDDEPAILDIVTRYLSKEGYQVTTATNGQEALDHYRAQAVDLIITDIMMPQMDGYDF 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA---IYR 117 ++ +R P I I+ + G DD + KP RE+ RV + Sbjct: 64 IDAVLQLRE--DQPFIFITAKDQAVDRIYSLTLGADDYLTKPFSPRELTLRVKNLLRRIQ 121 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 K + P + + + L +E ++L + N G+ AK+++F I Sbjct: 122 PKKAGQSVLSYAPFAIDEGQHRVTLYDQPLQLSLKEFQLLALFLKNPGRVFAKSELFLKI 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDP---VDSKRFLGYSI 220 + D + N + HI LR KL G P +++ LGY + Sbjct: 182 W-ETDYMEDANTLNVHIHSLRDKLAKLAGQRPYPKIETVWGLGYRL 226 >gi|21230432|ref|NP_636349.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66769574|ref|YP_244336.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. 8004] gi|188992783|ref|YP_001904793.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. B100] gi|21111993|gb|AAM40273.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66574906|gb|AAY50316.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. 8004] gi|167734543|emb|CAP52753.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris] Length = 229 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 84/224 (37%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++D + + D+ ++ L G L Sbjct: 5 ILIVDDEPAIRDMVAFALRKGEFEPIHAGDAREAQTAIADRVPDLILLDWML--PGTSGL 62 Query: 62 ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIY 116 +L R R S ++P+I ++ + ++GVDD V KP RE+ R Sbjct: 63 DLARRWRKESLTREIPIIMLTARGEENDRVGGLEAGVDDYVVKPFSARELLARIRAVMRR 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 R + G +R+ P+ E R+L + M + + +TQ+ Sbjct: 123 TREDDEDGSVAVGRLRIDGAAHRVFAGDAPVPIGPTEYRLLHFFMTHPERVYTRTQLLDH 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G VEE ++ HI +LRK L + V + R GY Sbjct: 183 VWGGSVY-VEERTIDVHIRRLRKTLEPFGLENMVQTVRGSGYRF 225 >gi|261414846|ref|YP_003248529.1| two component transcriptional regulator, winged helix family [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371302|gb|ACX74047.1| two component transcriptional regulator, winged helix family [Fibrobacter succinogenes subsp. succinogenes S85] gi|302327318|gb|ADL26519.1| DNA-binding response regulator [Fibrobacter succinogenes subsp. succinogenes S85] Length = 238 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 48/234 (20%), Positives = 88/234 (37%), Gaps = 16/234 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D +++ G F + +E E S + + ++ L + Sbjct: 6 ILIVEDEEIIRLGLQDNFELENYEVETACDGEEAIAKTDSFQPHLILLDVML--PKKSGF 63 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-----------HHREIL 109 E+ RIIR H + +I ++ + + D G DD V KP R I Sbjct: 64 EVCRIIRKKHPECIIIMLTAKTEETSKVAGLDMGADDYVTKPFSILELLARVKAFLRRID 123 Query: 110 ARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 + A + S + + I + G L RE +IL+Y RG+ V Sbjct: 124 LQTQANPTKQLASVDAIDFADIHLDFKKFIATKGGVPLELSTREFQILKYFWQRRGEVVL 183 Query: 170 KTQIFSAIYG-LFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221 + + ++G + +++HI LR+KL + + S R GY D Sbjct: 184 REDLLQDLWGYTPENMPSTRTIDNHIVNLRRKLEDDQANPKIILSIRGAGYKFD 237 >gi|228908610|ref|ZP_04072448.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis IBL 200] gi|228851026|gb|EEM95842.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis IBL 200] Length = 215 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 38/220 (17%), Positives = 94/220 (42%), Gaps = 11/220 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++ DD + A F +G + E + + D++ ++ + Sbjct: 4 LIADDEQDMLRILKAYFEKEGFEVLLAKDGEEALQMFYDEKIDLAILDWM--MPKHSGIT 61 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + I+ +S V ++ ++ + L SG D+ V KP H ++ R ++L Sbjct: 62 VCQEIKKNSSVKVLMLTAKSESEDELAALQSGADEYVKKPFHPGVLITRA----KKLIQH 117 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 ++ + +++ + + E +++ + ++G + + ++ ++G FD Sbjct: 118 DDIIQVQDVKINFAKNKVYKNDIELEITKTELELIKCFLNHKGTILTRKKLLDMVWG-FD 176 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 EE V++H+ +LRKK+ + + + R LGYS++ Sbjct: 177 YFGEERTVDTHVRRLRKKIGE----NIIKTHRGLGYSLEE 212 >gi|326332848|ref|ZP_08199106.1| DNA-binding response regulator MtrA [Nocardioidaceae bacterium Broad-1] gi|325949406|gb|EGD41488.1| DNA-binding response regulator MtrA [Nocardioidaceae bacterium Broad-1] Length = 229 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 51/226 (22%), Positives = 94/226 (41%), Gaps = 14/226 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D ++ +G + D+ ++ L G LE Sbjct: 8 LVVEDEPVINQAVSDRLTAEGYDVVRAWDGPGAVSCFEETSPDLVVLDVML--PGYDGLE 65 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121 + R I+A VP++ ++ L G DD + KP RE++ARV A+ RR++ Sbjct: 66 VCRRIQAVRPVPVLMLTARVDEADVLVGLGVGADDYLTKPFRARELVARVNALLRRVERA 125 Query: 122 ------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 AE G +R+ R V G L E +L L A+ G V + ++ + Sbjct: 126 AELAGAPRRTAEIGGLRMDPAARRVWVDGSEVRLTPTEFDLLVCLAADPGAVVTRERLLA 185 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G D + V+SH+ LR K+ + V + +GY+++ Sbjct: 186 EVWGWNDASG-TRTVDSHVKGLRAKIGSA----RVRTVHGVGYALE 226 >gi|313672415|ref|YP_004050526.1| two component transcriptional regulator, winged helix family [Calditerrivibrio nitroreducens DSM 19672] gi|312939171|gb|ADR18363.1| two component transcriptional regulator, winged helix family [Calditerrivibrio nitroreducens DSM 19672] Length = 231 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 41/229 (17%), Positives = 95/229 (41%), Gaps = 10/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD + D L +G ++ ++ + ++ ++ L Sbjct: 5 ILIIDDDYEILDMLKILLEVEGYEVDTASNGFTGLEKLKKSSYNLILLDLNL--PDIAGE 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAA 114 +L + IR +S++P++ +S S+ + + G DD + KP + E++ R A Sbjct: 63 QLCKAIRKNSELPILILSAKESVTDKVLCLEYGADDYITKPFQNIELIARIKAILRRCAC 122 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 Y + + + + + EV +E I YL+ N+GK V++ ++ Sbjct: 123 NYGTEEEHTSILYYKNFIIDVENMIVKRDDEVINFTPKEFEIFLYLVRNKGKIVSRDKMI 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 + ++G + ++ HI +R+K+ G + + +GY ++ Sbjct: 183 NELWGKDNLYKWSRSIDVHIQHIRQKIEKNSKGHLYLKTISGVGYKLEE 231 >gi|295090875|emb|CBK76982.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Clostridium cf. saccharolyticum K10] Length = 223 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 44/221 (19%), Positives = 93/221 (42%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 + +D +++ + +G ++G S DV ++ G L Sbjct: 3 ILFAEDEPALREVTVKRLKAEGFGVDGCRDGREVLDYLDSTDYDVVILDIM--MPGIDGL 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R +R+ P++ ++ ++ + D+G DD + KP E+ AR+ A+ RR Sbjct: 61 TVLRTLRSRGNTVPVMLLTARDAVADRVGGLDAGADDYLTKPFEFAELTARIRALLRRNS 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQG-EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + +G L RE +LE L+ ++G +++TQ+ + ++ Sbjct: 121 DNKTDTASVADLTVEFSTRKVTRGGVEISLSSREFALLESLIRHKGAILSRTQLENQVWD 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 F N+V+ +I LRKK+ + + + R GY++ Sbjct: 181 -FGFEGGSNIVDVYIRYLRKKIDDPFEKKLIHTVRGAGYTL 220 >gi|312197681|ref|YP_004017742.1| transcriptional regulator [Frankia sp. EuI1c] gi|311229017|gb|ADP81872.1| two component transcriptional regulator, winged helix family [Frankia sp. EuI1c] Length = 239 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 47/226 (20%), Positives = 86/226 (38%), Gaps = 11/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D G + S ++ R D+ ++ L L Sbjct: 8 LLVVDDEPNILDMLRMALRFHGFDVVTARSGHEATAEVTARRPDLLVLDIML--PDGDGL 65 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILA------RVAA 114 EL R R +VP++ ++ + G DD V KP E++A R Sbjct: 66 ELCRRWREQGVEVPVVFLTARDRHADKIAGLTYGGDDYVTKPFSIDELVARIRAVLRRTR 125 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + + G+ L E R+L YL+ N + +++ QI Sbjct: 126 REQAADTGTAPLTFADLTLDETTHSVTRAGQHVELAPTEYRLLRYLLVNPNRVLSREQIL 185 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 A++ D VV+ ++S LR+KL G + ++R GY++ Sbjct: 186 DAVWDT-DYRGGATVVDQYVSYLRRKL-APYGPPLIHTQRGFGYAL 229 >gi|229145440|ref|ZP_04273826.1| Two component transcriptional regulator, winged helix [Bacillus cereus BDRD-ST24] gi|228638016|gb|EEK94460.1| Two component transcriptional regulator, winged helix [Bacillus cereus BDRD-ST24] Length = 215 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 39/220 (17%), Positives = 94/220 (42%), Gaps = 11/220 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++ DD + A F +G + E + + D++ ++ + Sbjct: 4 LIADDEQDMLRILKAYFEKEGFEVFLAKDGEEALQIFYDEKIDLAILDWM--MPKHSGIT 61 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + I+ +S V ++ ++ + L SG D+ V KP H ++ R ++L Sbjct: 62 VCQEIKKNSSVKVLMLTAKSESEDELAALQSGADEYVKKPFHPGVLITRA----KKLIQH 117 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 ++ + +++ + + E +++ + ++G + + ++ ++G FD Sbjct: 118 DDIIQVQDVKINFAKNKVYKNDIELEITKTELELIKCFLNHKGTILTRKKLLDIVWG-FD 176 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 EE V++H+ +LRKK+ D + + R LGYS++ Sbjct: 177 YFGEERTVDTHVRRLRKKIGE----DIIKTHRGLGYSLEE 212 >gi|119493257|ref|ZP_01624097.1| Two component Transcriptional regulator, Winged helix family protein [Lyngbya sp. PCC 8106] gi|119452730|gb|EAW33908.1| Two component Transcriptional regulator, Winged helix family protein [Lyngbya sp. PCC 8106] Length = 229 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 40/221 (18%), Positives = 91/221 (41%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + +G + + D+ ++ L + Sbjct: 10 ILLVEDEEALAQFLKQELTYEGYEVTVEQDGMNGLVKARESNPDLIILDWML--PRLSGI 67 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-HREILARVAAIYRRL 119 E+ R +R +H+ VP+I ++ + + DSG +D + KP + I Sbjct: 68 EICRRLRTSHNHVPIILLTAKDEVSDRVTGLDSGANDYIIKPFSLEEFLARVRVHIRHLQ 127 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + + + + R+ + L +E +LEYLM++ + + + QI ++G Sbjct: 128 EPNADLLTFYDLSLDRKTREVRRANRLIDLTAKEYDLLEYLMSHPRQVLTRNQILEQVWG 187 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D + N++E ++ LR KL ++ + + R +GY + Sbjct: 188 -YDFMGDSNIIEVYVRYLRIKLESEGESRLIQTVRSVGYVL 227 >gi|294509055|ref|YP_003565944.1| DNA-binding response regulator [Bacillus megaterium QM B1551] gi|294352359|gb|ADE72681.1| DNA-binding response regulator [Bacillus megaterium QM B1551] Length = 226 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 53/225 (23%), Positives = 97/225 (43%), Gaps = 8/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +F D G + + E + V I ++ Sbjct: 5 ILVVDDELEIVDIISDIFEDRGYRVLKAYNGEQALDQLKTN---VDLIILDVMMPQMDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 +L ++IR P++ +S S + F G DD + KP +E++ARV A RR + Sbjct: 62 DLCKVIREQIYCPILFLSAKHSEMDKVKGFTLGGDDYITKPFQVKELIARVEAHLRREQR 121 Query: 122 SNNRAETG----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + + D + G+ L +E +ILE L N G+ +K QI+ I Sbjct: 122 DRVSTQNQRLLGNLTINYSQHDVLLDGKKIDLTSKEFKILELLTVNLGQIFSKEQIYEKI 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +G+ D + N + HI+ LR KL + + + + +GY ++ Sbjct: 182 WGI-DAMGDLNTIIVHINNLRAKLTSGMSTYHIKTVWGVGYKLEK 225 >gi|313835591|gb|EFS73305.1| response regulator receiver domain protein [Propionibacterium acnes HL037PA2] gi|314928691|gb|EFS92522.1| response regulator receiver domain protein [Propionibacterium acnes HL044PA1] gi|314970292|gb|EFT14390.1| response regulator receiver domain protein [Propionibacterium acnes HL037PA3] gi|328908152|gb|EGG27911.1| response regulator [Propionibacterium sp. P08] Length = 226 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 48/223 (21%), Positives = 92/223 (41%), Gaps = 8/223 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++I+D ++ + +G ++ S S D+ ++ G E Sbjct: 5 LIIEDEESYREATAFMLRKEGFEVDTATSGSDGLETYSRNGADIVLLDLM--MPGLPGTE 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +R V +I ++ S + + G DD V KP HRE++AR+ A+ RR Sbjct: 63 VCRQLRQRGNVRIIMVTARDSEIDKVVGLELGADDYVTKPFSHRELVARIRAVTRRGGPE 122 Query: 123 NNRAETGPI----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + R+ + + V+G L +E +LE L+ N G+ + + + ++ Sbjct: 123 IEVSPDVLEESGVRMDVERHEVSVEGTTVRLALKEFDLLEVLLRNAGRVMTRASLIDRVW 182 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 G D + ++ HI +LR K+ + + R LGY Sbjct: 183 GA-DYVGDTKTLDVHIKRLRAKIEKDSSRPVRITTVRGLGYKF 224 >gi|302670905|ref|YP_003830865.1| two component system response regulator [Butyrivibrio proteoclasticus B316] gi|302395378|gb|ADL34283.1| two component system response regulator [Butyrivibrio proteoclasticus B316] Length = 232 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 45/227 (19%), Positives = 90/227 (39%), Gaps = 9/227 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD + + ++G + + AR ++ ++ + Sbjct: 4 ILVCDDDKEIVEAIEIYLEEEGFRVFKAYDGVEALEILRQARIQLAIVDIM--MPRMDGI 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L + +R S +P+I +S + + G DD + KP + E++ARV + RR Sbjct: 62 RLVKEVRRFSTIPVIFLSAKSEDADKILGLNIGADDYITKPFNPLELIARVKSNLRRYTT 121 Query: 122 SNNRAETGPIR------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + + + ++ V GE L E IL +L+ N+GK + QI+ Sbjct: 122 LGSEVTNDNVYTVGGLVIDDNSKECFVFGENIKLTPVEYNILCFLVKNKGKVYSIEQIYE 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 I+ +N + HI +R+K+ N + +GY I+ Sbjct: 182 HIWNESVGGRSDNTIAVHIRHIREKIEINPKDPKFLKVVWGVGYKIE 228 >gi|291295420|ref|YP_003506818.1| two component transcriptional regulator, winged helix family [Meiothermus ruber DSM 1279] gi|290470379|gb|ADD27798.1| two component transcriptional regulator, winged helix family [Meiothermus ruber DSM 1279] Length = 219 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 42/220 (19%), Positives = 81/220 (36%), Gaps = 6/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + G + S E L D+ + L E Sbjct: 3 LLIVEDEPSLASTLKESLSAQGFQVTLAASRSEAEALVWEQPFDLLLFDVMLPEGPEAGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL + +R I DD + KP E++AR+ A+ RR ++ Sbjct: 63 ELAQALRESGFHQPILFLTAREALPDRVRGLEWGDDYLPKPFALAELVARLKALGRRGEI 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEV-FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + P + + L +E +LE L N+G+ + +I I+G Sbjct: 123 KPQVLQISPQVELALEHRQVRRQGELVRLTAKEYLVLELLALNKGRVFTREEILERIWG- 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + N+++ ++ LRK+L D +++ R +GY + Sbjct: 182 PGFEADSNLIDVYVKNLRKRLGE----DVIETVRGVGYRL 217 >gi|187732444|ref|YP_001879602.1| transcriptional regulator YedW [Shigella boydii CDC 3083-94] gi|187429436|gb|ACD08710.1| heavy metal response regulator [Shigella boydii CDC 3083-94] Length = 260 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 50/219 (22%), Positives = 97/219 (44%), Gaps = 3/219 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D ++ + G ++ + +L + ++ L G Sbjct: 40 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIML--PGMDGW 97 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + +R Q P+I ++ S+ + DSG +D + KP E+LARV A R+ Sbjct: 98 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 157 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 N+ E +R+ S + L R+E ++L L + G+ + +T I S I+G+ Sbjct: 158 LNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 216 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + N V+ I +LR K+ + + + R +GYS Sbjct: 217 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 255 >gi|183601477|ref|ZP_02962847.1| response regulator of two-component system [Bifidobacterium animalis subsp. lactis HN019] gi|241191023|ref|YP_002968417.1| putative response regulator [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196429|ref|YP_002969984.1| putative response regulator [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183219083|gb|EDT89724.1| response regulator of two-component system [Bifidobacterium animalis subsp. lactis HN019] gi|240249415|gb|ACS46355.1| Putative response regulator [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250983|gb|ACS47922.1| Putative response regulator [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295794012|gb|ADG33547.1| Putative response regulator [Bifidobacterium animalis subsp. lactis V9] Length = 239 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 35/229 (15%), Positives = 77/229 (33%), Gaps = 16/229 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + ++G + D+ ++ L + Sbjct: 14 ILVVEDEPTLATAIAQRLTNEGWTARVAGDGATAVKAADKLHPDLIIMDLML--PVMDGI 71 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112 E + I A +P++ ++ + G DD ++KP RE Sbjct: 72 EATKRIEAQHPIPVLMLTARDDEADVVIGLGVGADDYMSKPFSMRELVARVRALLRRVDR 131 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 A + ++ + G + + R + G+ L E +L L + + Q Sbjct: 132 AKVIAHKSENDCILDFGTLVIDPAKRQVTLDGKEVHLTPTEFDLLTTLAKQPHSVLTREQ 191 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + ++ D A V+SH+ LR KL + + +GY+ + Sbjct: 192 LLEEVWDWVD-ASSTRTVDSHVKALRHKLGAST----IRTVHGVGYAFE 235 >gi|167636524|ref|ZP_02394820.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170689415|ref|ZP_02880607.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|254686315|ref|ZP_05150174.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254724311|ref|ZP_05186095.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254744396|ref|ZP_05202076.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|167528056|gb|EDR90856.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170666642|gb|EDT17413.1| DNA-binding response regulator [Bacillus anthracis str. A0465] Length = 223 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 43/226 (19%), Positives = 88/226 (38%), Gaps = 12/226 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +++ +G + + DV ++ L Sbjct: 3 ILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEG-PDVLILDVML--PDTDGY 59 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL R+ R +P++ ++ + L G DD V KP ++ E++ RV + RR+K Sbjct: 60 ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRVK 119 Query: 121 VSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 I P V + L RE + + ++N + + ++ Sbjct: 120 KKEVTVSHEVIEAGEITICPKERKVHVSEQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 179 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G F+ V+ + +LRKKL N + + + +GY +D Sbjct: 180 KVWG-FEYIGNTRAVDIMVQRLRKKLGNSG--EYIKTIYGVGYKLD 222 >gi|78059924|ref|YP_366499.1| two component transcriptional regulator [Burkholderia sp. 383] gi|77964474|gb|ABB05855.1| two component transcriptional regulator, winged helix family [Burkholderia sp. 383] Length = 277 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 49/228 (21%), Positives = 89/228 (39%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A + D D+ + L D ++ L G L Sbjct: 45 ILIVEDDADIADVLSLHLRDERYEVVHSADGAEGLRLLEQGGWDALILDLML--PGVDGL 102 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R RA P+I S S + + G DD + KP E++ARV A+ RR+ Sbjct: 103 EICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVD 162 Query: 121 VSNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + R+ V G L RE +L + + GK ++ + Sbjct: 163 ALARDSRIDAGTLDVAGLAIDPIAREASVDGARIDLTPREFDLLYFFARHPGKVFSRMDL 222 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 +A++G + E+ V +HI++LR K+ + + + GY + Sbjct: 223 LNAVWG-YQHEGYEHTVNTHINRLRAKIEADPAEPVRILTVWGRGYKL 269 >gi|87301808|ref|ZP_01084642.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. WH 5701] gi|87283376|gb|EAQ75331.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. WH 5701] Length = 263 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 91/228 (39%), Gaps = 9/228 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +LI+D +++ F G +E + + L A D+ ++ L G + Sbjct: 5 ILLIEDDEDMRELVAGHFEHGGFVVETADDGIKGQALALQASPDLILLDLMLPKVDGLTL 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R + +P++ I+ + + F+SG DD + KP E++ RV A+ RR Sbjct: 65 CQRLRRDERTAGIPILMITALGGTKDKVSGFNSGADDYLTKPFDLEELMVRVKALLRRSD 124 Query: 121 VSNNRAETGPIRVF------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + I + + + E L E +L L+ G+ VA + I Sbjct: 125 RAPLSTKHSEILSYGPLTLVPERFEAIWFDEPVRLTHLEFELLHCLLQRHGQTVAPSLIL 184 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 ++G ++ + + H+ LR KL + + + GY ++ Sbjct: 185 KEVWG-YEPDDDIETIRVHVRHLRTKLEPDPRKPRFIKTVYGAGYCLE 231 >gi|315648396|ref|ZP_07901495.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] gi|315276090|gb|EFU39436.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] Length = 231 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 35/226 (15%), Positives = 82/226 (36%), Gaps = 14/226 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + +G ++E + S DV ++ + Sbjct: 5 LVVDDEVSISSAVAYALRREGYTVETAGDGQEALERVESFHPDVMVLDVM--MPRLSGYD 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARVA 113 + R + + ++ ++ + + + G DD + KP RE +R Sbjct: 63 VCRKLENRQRPAILLLTVKDDIVDKVLGLELGADDYMTKPFDMREIIARVKALSRRSRTV 122 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 ++ N + + R +G++ L +E ++ L N + ++ + Sbjct: 123 ENVQQPASPQNEIRISGLVINLLNRTVHAEGKLLELTPKEFDLIALLARNPERVYSREAL 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 ++ + D A V+ H+ +LRKKL + D + + +GY Sbjct: 183 LEQVWDM-DFAGGTRTVDIHVQRLRKKLGDL--HDVIQTVYGIGYK 225 >gi|309386157|gb|ADO67022.1| response regulator [Enterococcus faecium] Length = 228 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 45/224 (20%), Positives = 88/224 (39%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + A + S+ S D+ ++ L L Sbjct: 5 ILIVDDEEKILEIIDAYLVANHYSVYKAISGAMALEKFEKNNPDLVVLDLML--PDTDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R IR S VP+I ++ L G DD + KP +E++AR+ + RR + Sbjct: 63 TVCRKIREVSNVPIIMLTAKSDEDDILTGLKLGADDYMIKPFSPKELVARIQTVLRRTET 122 Query: 122 SNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 +N + G + V+ + R + L E IL L++ K +++ + + Sbjct: 123 LSNPNKLSSSNGELIVYPESRQVYLHQVELNLTTTEFDILHALISTPNKVFSRSDLIEKV 182 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 G+ + + ++SHI LR K+ + + + GY Sbjct: 183 KGI-EFDGLDRSIDSHIKNLRHKIENDAKSPMYILTVHGTGYRF 225 >gi|167968859|ref|ZP_02551136.1| putative two component system response transcriptional positive regulator PhoP [Mycobacterium tuberculosis H37Ra] gi|308397079|ref|ZP_07492385.2| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu012] gi|308367020|gb|EFP55871.1| two component system transcriptional regulator phoP [Mycobacterium tuberculosis SUMu012] Length = 240 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 46/224 (20%), Positives = 85/224 (37%), Gaps = 10/224 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD A + + G + + R D ++ G Sbjct: 17 LVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVM--MPGMDGFG 74 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPI-----HHREILARVAAIY 116 + R +RA P + ++ SLQ + G DD V KP R + A Sbjct: 75 VLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAGK 134 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + N R I + + + G+ L E +L Y + N G ++K +I Sbjct: 135 GNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDH 194 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +D + NVVES++ LR+K+ + + + R +GY + Sbjct: 195 VW-RYDFGGDVNVVESYVLYLRRKI-DTGEKRLLHTLRGVGYVL 236 >gi|331092529|ref|ZP_08341351.1| hypothetical protein HMPREF9477_01994 [Lachnospiraceae bacterium 2_1_46FAA] gi|330400750|gb|EGG80353.1| hypothetical protein HMPREF9477_01994 [Lachnospiraceae bacterium 2_1_46FAA] Length = 229 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 45/229 (19%), Positives = 87/229 (37%), Gaps = 10/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D D + F + + + + D++ ++ L Sbjct: 3 ILVVDDEREIADVVELYLQSDQYHIFKFYTGQEALDCIDNTKIDLALLDVML--PDIDGF 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IR P+I ++ + G DD + KP + E++ARV A RR Sbjct: 61 EILKRIREKYTFPVIMLTAKIEYMDKITGLTLGADDYIPKPFNPLELVARVKAQLRRYTQ 120 Query: 122 SNNRAETGPIRVFS-------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N+ + + + + L E IL L NRG+ ++ ++F Sbjct: 121 YNDVGKNEGDIIDFGALFLNRTSHECVYYDKELTLTPIEFDILWLLCENRGRVISSEELF 180 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSIDW 222 ++ N V HI LR+K+ G D + + +GY ++ Sbjct: 181 RTVWKEQYYKNSNNTVMVHIRHLREKMSEPTGKSDFIKTVWGVGYKVEE 229 >gi|154688062|ref|YP_001423223.1| YxdJ [Bacillus amyloliquefaciens FZB42] gi|154353913|gb|ABS75992.1| YxdJ [Bacillus amyloliquefaciens FZB42] Length = 229 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 46/225 (20%), Positives = 87/225 (38%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++ G + + + DV ++ L Sbjct: 4 IMIVEDSEDIRGLLQNYLEKYGYQTVAADDFTAVLDVFLREKPDVVLLDINL--PSYDGY 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115 R IR HS P+I IS + ++G DD + KP + + R A Sbjct: 62 YWCRQIRQHSTSPIIFISARSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYG 121 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 K E +++F + + Q E L ++E ++LE L+ K + ++ Sbjct: 122 EYAAKQGEKVVEYAGVQLFVERFELRFQDEKSELSKKESKLLEVLLERGEKVTGRDRLME 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + D V++N + +I++LRKKLR ++S R GY + Sbjct: 182 KTWDT-DIFVDDNTLNVYITRLRKKLRELNAPVSIESVRGEGYQL 225 >gi|83999830|emb|CAH60130.1| putative two-component response regulator [Streptomyces tenjimariensis] Length = 234 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 46/233 (19%), Positives = 93/233 (39%), Gaps = 22/233 (9%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 + ++D ++++ DG ++ + R D++ ++ L G + Sbjct: 7 LFVEDDDVIREATQLALERDGFTVTAMPDGLSGLESFRADRPDIALLDVML--PGMDGVS 64 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R IR S VP+I +S + ++G DD V KP ++AR+ A+ RR + Sbjct: 65 LCRRIRDESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRRFGHA 124 Query: 123 NNRAETGPIRV---------------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167 P ++G + G L E R+L + G Sbjct: 125 GGAESPDPEGRGQAERGLLVFGDLEVDTEGMEVRRAGAPVALTPTEMRLLLEFSSAPGTV 184 Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +++ ++ ++ + + VV+ H+ +LR K+ G D +++ R GY + Sbjct: 185 LSRDKLLERVWD-YGWGGDTRVVDVHVQRLRAKI----GQDRIETVRGFGYKL 232 >gi|83747754|ref|ZP_00944788.1| PhoB [Ralstonia solanacearum UW551] gi|207724004|ref|YP_002254402.1| phosphate regulon two-component response regulator protein [Ralstonia solanacearum MolK2] gi|207742914|ref|YP_002259306.1| phosphate regulon two-component response regulator protein [Ralstonia solanacearum IPO1609] gi|83725526|gb|EAP72670.1| PhoB [Ralstonia solanacearum UW551] gi|206589212|emb|CAQ36174.1| phosphate regulon two-component response regulator protein [Ralstonia solanacearum MolK2] gi|206594309|emb|CAQ61236.1| phosphate regulon two-component response regulator protein [Ralstonia solanacearum IPO1609] Length = 237 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 45/231 (19%), Positives = 82/231 (35%), Gaps = 10/231 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++++D + + G + E L S D+ ++ L G G Sbjct: 5 ILVVEDEPAIAELIAVNLQHAGHYPIRAYNAEQALSLMSDVLPDLVLLDWMLPGKSGVMF 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112 + R Q+P+I ++ Q + D G DD V KP +E + R Sbjct: 65 AKELRANERTRQIPIIMLTARSEEQDKIMGLDVGADDYVTKPFSPKELLARIKAVLRRRA 124 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + N + L E R+L +LM + + +++Q Sbjct: 125 PQLTDDVVAINGLRLDPATHRVTALNSESENPIKLDLGPTEFRLLHFLMTHPERVHSRSQ 184 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 + ++G VEE V+ HI +LR L +++ R GY + N Sbjct: 185 LLDQVWGDH-VFVEERTVDVHIKRLRAALAPGGYSTMIETVRGSGYRLARN 234 >gi|315640983|ref|ZP_07896074.1| response regulator [Enterococcus italicus DSM 15952] gi|315483254|gb|EFU73759.1| response regulator [Enterococcus italicus DSM 15952] Length = 226 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 45/224 (20%), Positives = 88/224 (39%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + A + S+ S D+ ++ L L Sbjct: 3 ILIVDDEEKILEIIDAYLVANHYSVYKAISGAMALEKFEKNNPDLVVLDLML--PDTDGL 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R IR S VP+I ++ L G DD + KP +E++AR+ + RR + Sbjct: 61 TVCRKIREVSNVPIIMLTAKSDEDDILTGLKLGADDYMIKPFSPKELVARIQTVLRRTET 120 Query: 122 SNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 +N + G + V+ + R + L E IL L++ K +++ + + Sbjct: 121 LSNPNKLSSSNGELIVYPESRHVYLHQVELNLTTTEFDILHALISTPNKVFSRSDLIEKV 180 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 G+ + + ++SHI LR K+ + + + GY Sbjct: 181 KGI-EFDGLDRSIDSHIKNLRHKIENDAKSPMYILTVHGTGYRF 223 >gi|170077111|ref|YP_001733749.1| two-component response regulator (ycf27) [Synechococcus sp. PCC 7002] gi|169884780|gb|ACA98493.1| two-component response regulator (ycf27) [Synechococcus sp. PCC 7002] Length = 258 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 43/227 (18%), Positives = 89/227 (39%), Gaps = 10/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V+ G + + + D+ ++ Sbjct: 16 ILVVDDEIAVRRILQTRLSMIGYDIITAADGDEALDIFWREDPDLVILDVM--MPKRDGY 73 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + IR S P+I ++ + + G DD + KP +E+ R+ I RR + Sbjct: 74 YVCQEIRRESSTPIIMLTALGDVADRITGLRFGADDYLIKPFSPKELEVRIQCILRRTQK 133 Query: 122 SNNRA------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + T + + ++ R + L E +LE L+ G+ +++T I + Sbjct: 134 TLPPTEEAGILRTANLVIDTNRRKVTQNNKPLRLTHIEFNLLELLVNQAGQPLSRTDILT 193 Query: 176 AIYGL-FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 AI+G + VV+ H+S+LR K+ + + + ++R GY Sbjct: 194 AIWGYVPRRHSDLRVVDVHVSRLRSKIEQDPRQPEFIITERGTGYLF 240 >gi|158318242|ref|YP_001510750.1| two component transcriptional regulator [Frankia sp. EAN1pec] gi|158113647|gb|ABW15844.1| two component transcriptional regulator, winged helix family [Frankia sp. EAN1pec] Length = 270 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 45/226 (19%), Positives = 94/226 (41%), Gaps = 12/226 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + D G + + + ++ + D+ ++ L E Sbjct: 24 LVVDDEPNIVDLVRMALRFHGFDVVTAATGQEALTRAAADQPDLLILDVML--PDADGFE 81 Query: 63 LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R +RA +V ++ ++ + + + G DD + KP E++ARV A+ RR + Sbjct: 82 VCRRLRADGAEVAVVYLTARDAHRDKITGLTYGGDDYITKPFAVEELIARVRAVLRRTRR 141 Query: 122 SNNRA-------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + D + L E +L Y + N + +++ QI Sbjct: 142 PAPEPSPAPGLLTYADVELDPDAHLVRRADQPVELSPTEFSLLRYFLHNPNRVLSRAQIL 201 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +A++ D E VV+ ++S LR+KL G + ++R GY++ Sbjct: 202 AAVWDR-DFDGEPTVVDQYVSYLRRKLGQH-GPPLIHTQRGFGYAL 245 >gi|313819282|gb|EFS56996.1| response regulator receiver domain protein [Propionibacterium acnes HL046PA2] gi|314960588|gb|EFT04690.1| response regulator receiver domain protein [Propionibacterium acnes HL002PA2] gi|315085982|gb|EFT57958.1| response regulator receiver domain protein [Propionibacterium acnes HL002PA3] Length = 236 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 38/224 (16%), Positives = 82/224 (36%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A + + + +G S G + R + ++ L G + Sbjct: 10 ILVVDDDAALAEMLQLVLIKEGFSTAGVGHGSDVMDVFREHRPALVLLDLML--PGRDGI 67 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH---REILARVAAIYRR 118 + + IR S VP+I ++ + +G DD V KP + Sbjct: 68 RICQDIRRESGVPIIMLTARTDTPNVVQGLGAGADDYVCKPFRSAELIARIRARLRTPVS 127 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + G + + ++ GE L E +L + + ++ + ++ Sbjct: 128 RREEGEVITVGDLTIDPVAHLVQLGGEEISLTPLEYSLLVTMAQYPNRVFSRETLLREVW 187 Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 G + ++ +V H+ +LR K+ N + + R +GY I+ Sbjct: 188 G-YTNIIDTRLVNVHVQRLRSKVERNADHPQMIVTVRGIGYRIN 230 >gi|319763169|ref|YP_004127106.1| phosphate regulon transcriptional regulatory protein phob [Alicycliphilus denitrificans BC] gi|330825232|ref|YP_004388535.1| two component transcriptional regulator PhoB [Alicycliphilus denitrificans K601] gi|317117730|gb|ADV00219.1| phosphate regulon transcriptional regulatory protein PhoB [Alicycliphilus denitrificans BC] gi|329310604|gb|AEB85019.1| two component transcriptional regulator PhoB, winged helix family [Alicycliphilus denitrificans K601] Length = 233 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 45/223 (20%), Positives = 90/223 (40%), Gaps = 10/223 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D A + + +G + E + + DV ++ L G L+ Sbjct: 8 LVVEDEAAIAELIAVNLRHNGFTPIWAEDAEAAQRELDAVLPDVILLDWML--PGMSGLQ 65 Query: 63 LPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYR 117 L R R VP++ ++ + D+G DD + KP +E+ R R Sbjct: 66 LARKWRSAARTKGVPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIRAVLRRR 125 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + G + + + QG+ L E ++L YLM + + ++ Q+ I Sbjct: 126 APEQVADSVAIGALSLDAATHRASFQGQPLKLGPTEFKLLHYLMKHAERVHSRAQLLDKI 185 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G +EE V+ H+ +LR+ L +++ R GY + Sbjct: 186 WGDHVY-IEERTVDVHVKRLREALGEASA--MLETVRGAGYRL 225 >gi|229819337|ref|YP_002880863.1| two component transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229565250|gb|ACQ79101.1| two component transcriptional regulator, winged helix family [Beutenbergia cavernae DSM 12333] Length = 241 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 86/228 (37%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 V++DD ++D G + + D+ ++ L Sbjct: 14 LVVVDDEPNIRDLLATSLRFAGFDVVTASDGTEALEAIVEGEPDLVVLDVML--PDMDGF 71 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI---HHREILARVAAIYR 117 + R +R + P++ ++ + + G DD V KP + V + Sbjct: 72 TVTRRLRERGVRTPVVFLTARDDVADAVTGLTVGGDDYVTKPFSLEEVVARIRAVLRRSQ 131 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + + D R+ G L E ++L YLM N G+ ++KTQI + Sbjct: 132 AHDADSGVLRYADLELDEDAREVRRAGRPVELSPTEFKLLRYLMLNAGRVLSKTQILDHV 191 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGF-----DPVDSKRFLGYSI 220 + +D E +VES+IS LR+K+ + ++R +GY + Sbjct: 192 W-EYDWRGESAIVESYISYLRRKIDVPGPDGAPTVPLIHTRRGIGYVL 238 >gi|210618151|ref|ZP_03291916.1| hypothetical protein CLONEX_04149 [Clostridium nexile DSM 1787] gi|210148975|gb|EEA79984.1| hypothetical protein CLONEX_04149 [Clostridium nexile DSM 1787] Length = 223 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 43/223 (19%), Positives = 92/223 (41%), Gaps = 10/223 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D ++ L + G + N + ++ Sbjct: 5 ILIIEDEKAIQSVLYELLTEAGYRVTLANDGLEGLSQFEKQYFSLILLDIM--MPKIDGY 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 + IIR +S +P+I ++ + + F+ DD + KP + +L R+ + Sbjct: 63 AVCEIIRKNSDIPIIMLTAMDEEEAQVKAFELQADDYITKPFSLKLVLMRIEAVLRRTKE 122 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++N + I++ ++ EV G+ L + E ILE M +R + + + + + ++ Sbjct: 123 KVENHNIFISHGIKLDTNRHTVEVNGKEINLTQLEFDILEVFMKHRNQVLTRDNLINQVW 182 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 G +D +E V H+ LR+KL D + + R +GY + Sbjct: 183 G-YDFTGDEKAVNIHVMNLRRKLD----IDCIQTVRGVGYKFE 220 >gi|196040633|ref|ZP_03107932.1| regulatory protein VanR [Bacillus cereus NVH0597-99] gi|196028423|gb|EDX67031.1| regulatory protein VanR [Bacillus cereus NVH0597-99] Length = 228 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 48/227 (21%), Positives = 90/227 (39%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ ++ + + L D+ ++ + Sbjct: 5 ILIVDDDKEIRNLISVYLENEDLKTQKAEDAIEALQLLEEKEFDLIILDIM--MPNMDGI 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E IR +P+I +S + SG DD ++KP + E++ARV + RR K Sbjct: 63 EACMKIREDRNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 122 Query: 122 SNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N E V +D V+G+ L +E ILE L N+G ++ +I+ Sbjct: 123 YNTPIEYNKSILEIGDLTVNTDTCQVWVRGKETRLTPKEFAILELLARNKGSVLSVAKIY 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220 ++ +N V HI+K+R K+ + + +GY I Sbjct: 183 ETVWKEV-FYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGYKI 228 >gi|218897940|ref|YP_002446351.1| DNA-binding response regulator [Bacillus cereus G9842] gi|228901405|ref|ZP_04065593.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis IBL 4222] gi|228965805|ref|ZP_04126879.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar sotto str. T04001] gi|218545632|gb|ACK98026.1| DNA-binding response regulator [Bacillus cereus G9842] gi|228793796|gb|EEM41325.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar sotto str. T04001] gi|228858229|gb|EEN02701.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis IBL 4222] Length = 215 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 38/220 (17%), Positives = 94/220 (42%), Gaps = 11/220 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++ DD + A F +G + E + + D++ ++ + Sbjct: 4 LIADDEQDMLRILKAYFEKEGFEVLLAKDGEEALQMFYDEKIDLAILDWM--MPKHSGIT 61 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + I+ +S V ++ ++ + L SG D+ V KP H ++ R ++L Sbjct: 62 VCQEIKKNSSVKVLMLTAKSESEDELAALQSGADEYVKKPFHPGVLITRA----KKLIQH 117 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 ++ + +++ + + E +++ + ++G + + ++ ++G FD Sbjct: 118 DDIIQVQDVKINFAKNKVYKNDIELEITKTELELIKCFLNHKGTILTRKKLLDIVWG-FD 176 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 EE V++H+ +LRKK+ + + + R LGYS++ Sbjct: 177 YFGEERTVDTHVRRLRKKIGE----NIIKTHRGLGYSLEE 212 >gi|85375211|ref|YP_459273.1| DNA-binding response regulator [Erythrobacter litoralis HTCC2594] gi|84788294|gb|ABC64476.1| DNA-binding response regulator [Erythrobacter litoralis HTCC2594] Length = 248 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 41/227 (18%), Positives = 88/227 (38%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L+DD +++ G + +S + + R D++ ++ GE L Sbjct: 13 ILLVDDEPSLREPLAEYLAGQGFRISEADSAAGARSVLLNERPDIALVDIM--MPGEDGL 70 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R + +P+I ++ + + G DD V KP RE++AR+ ++ RR Sbjct: 71 SLTRHLIETRDLPVILLTARGETTDRIIGLEIGADDYVTKPFEPRELVARIRSVLRRAGR 130 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPL-------PRRERRILEYLMANRGKRVAKTQIF 174 + VF + ++ + E R+L + + K + + ++ Sbjct: 131 APAVDAEDAFYVFEGWQLDPLKRRLTDPDGALVAISTAEFRMLRAFLDHPKKVLDRDRLL 190 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 + G + V++ +S+LR+K+ + + R GY Sbjct: 191 DLVQGREAHLFD-RAVDNQVSRLRRKIEADSRNPHFIQTVRGGGYRF 236 >gi|33239602|ref|NP_874544.1| two-component response regulator [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33237127|gb|AAP99196.1| Two-component response regulator [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 255 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 39/229 (17%), Positives = 82/229 (35%), Gaps = 10/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +LI+D +++ G ++ + L + D+ ++ L G + Sbjct: 5 ILLIEDDKDMRELVGGHLEHTGFDVQVAEDGIKGQALALQYKPDLILLDLMLPNVDGLTL 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVA 113 + R S +P++ I+ + + + F+SG DD + KP E+ R Sbjct: 65 CQRLRRDERTSSIPILMITALGATKDKVTGFNSGADDYLTKPFDLEELHVRIKALLRRTN 124 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 GP+ + + + L E +L L+ G+ VA + I Sbjct: 125 RAPLGSTGHPEILSYGPMTLVPERFEAIWFECPVRLTHLEFELLHCLLQRHGQTVAPSLI 184 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 ++G ++ + + H+ LR KL + + GY ++ Sbjct: 185 LKEVWG-YEPDDDIETIRVHVRHLRTKLEPEPRKPRFIKTVYGAGYCLE 232 >gi|333025275|ref|ZP_08453339.1| putative phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. Tu6071] gi|332745127|gb|EGJ75568.1| putative phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. Tu6071] Length = 265 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 46/231 (19%), Positives = 94/231 (40%), Gaps = 20/231 (8%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 + ++D ++++ G + + D++ ++ + G + Sbjct: 40 LFVEDDDVIREATQLALERVGFRVTAVPDGLQGLESFRAGAPDIALLDVMV--PGMDGVS 97 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121 L R IR S VP+I +S + ++G DD V KP ++AR+ A+ RR Sbjct: 98 LCRRIRDESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDVSVLVARLRAVMRRFGHA 157 Query: 122 ------------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 ++ G + V ++G + GE L E R+L A G ++ Sbjct: 158 GGGARQAVEEEAASGPLRFGDLEVDTEGMEVRRGGERIALTPTEMRLLLEFSAAPGTVLS 217 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + ++ ++ + + VV+ H+ +LR K+ G D +++ R GY + Sbjct: 218 RDRLLERVWD-YGWGGDTRVVDVHVQRLRAKI----GQDRIETVRGFGYKL 263 >gi|310766801|gb|ADP11751.1| Response regulator in two-component regulatory system with PhoR [Erwinia sp. Ejp617] Length = 229 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 38/222 (17%), Positives = 90/222 (40%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D A +++ + + + L D+ ++ L G G + Sbjct: 5 ILVVEDEAPIREMLCFVLEQNDYQPIEAADYDRAVNLLIEPWPDLILLDWMLPGGSGIQF 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ + +P++ ++ + + + G DD + KP +E++AR+ A+ RR+ Sbjct: 65 IKHLKREAMTRDIPVVMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRRIS 124 Query: 121 V--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 E + + + + E ++L + M + + ++ Q+ + ++ Sbjct: 125 PLAVEEVIEMQGLTLDPSSHRVMSGNQPLDMGPTEYKLLHFFMTHTERVYSREQLLNHVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G + VE+ V+ HI +LRK L V + R GY Sbjct: 185 GT-NVYVEDRTVDVHIRRLRKALELNGHDRMVQTVRGTGYRF 225 >gi|262376905|ref|ZP_06070132.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter lwoffii SH145] gi|262308250|gb|EEY89386.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter lwoffii SH145] Length = 236 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 40/224 (17%), Positives = 89/224 (39%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ G + + R + ++ + G G + Sbjct: 6 ILIVDDELPIREMIHTSLDMAGFQCLQAEDAKQAHQMIVDQRPALILLDWMMPG-GVSGV 64 Query: 62 ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 +L R ++ S++P+I ++ + D+G DD + KP RE+++R+ A+ RR Sbjct: 65 DLCRRLKRDESLSEIPVIMLTARGEEDHKVQGLDAGADDYMTKPFSTRELVSRIKAVLRR 124 Query: 119 LKVSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + + + + E R+L + M + + + Q+ Sbjct: 125 ANALSGEKTIDANGLILDPVSQRVNFGNNILEMGPTEYRLLAFFMTHPERAYTRAQLLDQ 184 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + +E+ ++ HI +LRK L V + R GY Sbjct: 185 VWG-GNVYIEDRTIDVHIRRLRKVLEPYGVDRFVQTVRGTGYRF 227 >gi|228921532|ref|ZP_04084854.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228939981|ref|ZP_04102555.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228953198|ref|ZP_04115252.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228959096|ref|ZP_04120796.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar pakistani str. T13001] gi|228972876|ref|ZP_04133471.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228979457|ref|ZP_04139789.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis Bt407] gi|229070339|ref|ZP_04203586.1| Two component transcriptional regulator, winged helix [Bacillus cereus F65185] gi|229080052|ref|ZP_04212580.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock4-2] gi|229110313|ref|ZP_04239885.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock1-15] gi|229179150|ref|ZP_04306505.1| Two component transcriptional regulator, winged helix [Bacillus cereus 172560W] gi|229190963|ref|ZP_04317953.1| Two component transcriptional regulator, winged helix [Bacillus cereus ATCC 10876] gi|228592361|gb|EEK50190.1| Two component transcriptional regulator, winged helix [Bacillus cereus ATCC 10876] gi|228604305|gb|EEK61771.1| Two component transcriptional regulator, winged helix [Bacillus cereus 172560W] gi|228673053|gb|EEL28325.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock1-15] gi|228703176|gb|EEL55634.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock4-2] gi|228712777|gb|EEL64705.1| Two component transcriptional regulator, winged helix [Bacillus cereus F65185] gi|228780275|gb|EEM28510.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis Bt407] gi|228786749|gb|EEM34733.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228800605|gb|EEM47522.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar pakistani str. T13001] gi|228806425|gb|EEM52990.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228819593|gb|EEM65644.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228838151|gb|EEM83470.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|326940635|gb|AEA16531.1| two-component response regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 215 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 38/220 (17%), Positives = 94/220 (42%), Gaps = 11/220 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++ DD + A F +G + E + + D++ ++ + Sbjct: 4 LIADDEQDMLRILKAYFEKEGFEVLLAKDGEEALQIFYDEKIDLAILDWM--MPKHSGIT 61 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + I+ +S V ++ ++ + L SG D+ V KP H ++ R ++L Sbjct: 62 VCQEIKKNSSVKVLMLTAKSESEDELAALQSGADEYVKKPFHPGVLITRA----KKLIQH 117 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 ++ + +++ + + E +++ + ++G + + ++ ++G FD Sbjct: 118 DDIIQVQDVKINFAKNKVYKNDIELEITKTELELIKCFLNHKGTILTRKKLLDIVWG-FD 176 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 EE V++H+ +LRKK+ + + + R LGYS++ Sbjct: 177 YFGEERTVDTHVRRLRKKIGE----NIIKTHRGLGYSLEE 212 >gi|227494381|ref|ZP_03924697.1| response regulator PhoP [Actinomyces coleocanis DSM 15436] gi|226832115|gb|EEH64498.1| response regulator PhoP [Actinomyces coleocanis DSM 15436] Length = 252 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 46/223 (20%), Positives = 92/223 (41%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++D + G + L ++ D+ ++ L Sbjct: 30 LLVVDDEPNIRDLLASSLRFAGFEVITAADGASAFHLATTENPDLIVLDVML--PDMDGF 87 Query: 62 ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI--HHREILARVAAIYRR 118 + R + A +++P++ ++ ++ + G DD V KP R Sbjct: 88 TVTRRLRNAGTRIPVLFLTARDDMRDKIQGLTVGGDDYVTKPFGLEEVVARIRAILRRTM 147 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 V + + + D + G L E ++L YLM N G+ V+K QI ++ Sbjct: 148 DSVDDGILRIADLELDEDAYEVRRDGVELELSPTEFKLLRYLMINEGRVVSKMQILDHVW 207 Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 +D + +VES+IS LR+KL ++ D + ++R +GY + Sbjct: 208 -EYDWEGDAAIVESYISYLRRKLAVHEDSKDLIHTRRGVGYML 249 >gi|331005887|ref|ZP_08329239.1| Phosphate regulon transcriptional regulatory protein PhoB [gamma proteobacterium IMCC1989] gi|330420331|gb|EGG94645.1| Phosphate regulon transcriptional regulatory protein PhoB [gamma proteobacterium IMCC1989] Length = 233 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 41/222 (18%), Positives = 85/222 (38%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +++DD + ++D + L + + ++ L G G + Sbjct: 7 ILIVDDESAIRDMLRVALEMADYHCLEAADTQSAHALIIDQKPSLILLDWMLPGTSGIDL 66 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118 + + +P+I ++ + + G DD + KP RE++AR+ A Sbjct: 67 ARRLKKDEFTADIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRRTE 126 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + E +R+ G + E + E R+L + + ++ + + Q+ ++ Sbjct: 127 GISAAELIEVEGLRMDPVGHVVTINNEPLQMGPTEYRLLAFFLTHQDRVYTRGQLLDHVW 186 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G + VEE V+ HI +LRK L + + R GY Sbjct: 187 G-GNVYVEERTVDVHIRRLRKAL--TSHDRFIQTVRGAGYRF 225 >gi|225574599|ref|ZP_03783209.1| hypothetical protein RUMHYD_02676 [Blautia hydrogenotrophica DSM 10507] gi|225038213|gb|EEG48459.1| hypothetical protein RUMHYD_02676 [Blautia hydrogenotrophica DSM 10507] Length = 225 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 46/226 (20%), Positives = 98/226 (43%), Gaps = 6/226 (2%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEK 59 + +++D +++ + G ++GF + + D++ ++ L G + Sbjct: 3 LIYVVEDDKNIREIESFALKNAGYEIQGFVCAKDFYTAMLRQKPDLALLDVMLPDEDGLE 62 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYR 117 ++ R R +P++ ++ + + D G DD + KP E+++RV A Sbjct: 63 IVRKLRSDRMTKHIPILMVTAKTTEIDKVKGLDMGADDYMTKPFGVMELISRVKALLRRS 122 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 ++ + GP+ + + R G+ L +E +L LM N G +++ I + + Sbjct: 123 QIIPEEEVIQVGPVTMDQNKRKVSAYGKACELTYKEYELLHLLMQNAGIVISRDVILNRV 182 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 +G D E ++ HI LRKKL+ + + R +GY + N Sbjct: 183 WGT-DYEGESRTIDMHIKTLRKKLKEAGA--MIQTVRNVGYVFNEN 225 >gi|254425657|ref|ZP_05039374.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] gi|196188080|gb|EDX83045.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] Length = 640 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 43/222 (19%), Positives = 87/222 (39%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L+DD A + D ++ E E + D ++ L + + Sbjct: 29 ILLVDDDAALMDILAEQLIKQRYVVDIATDGESAEECVNLFSYDFIILDMGL--PDIEGI 86 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119 L + +R P++ ++ + + + ++G DD V KP E+ AR+ A R Sbjct: 87 SLCQRLRQQKITSPILMLTAEDNSKAKVKALNAGADDYVVKPFDFEELFARIRALRRRDN 146 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + G +RV + + Q + +E +LE + + + + I ++ Sbjct: 147 NTLAAVLQQGDLRVDPNTFEVFYQDRPLRVTPKEYTMLELFLRHPNQVFSIDAIIDNLWS 206 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220 D E+ V +H+ LR+KL+ D + + LGY + Sbjct: 207 FED-PPSEDAVRTHVKGLRQKLKAGGAPKDFIQTVYGLGYRL 247 Score = 59.7 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 37/101 (36%), Gaps = 1/101 (0%) Query: 5 IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLEL 63 IDD V + G + + S R D+ I+ + G ++ + Sbjct: 517 IDDDPQVLALLQTILSPWGFQTTALENADRLFDTLESVRPDLLLIDVEMPETNGLEICRV 576 Query: 64 PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH 104 R Q+P++ +S + T F+ G DD ++K Sbjct: 577 LRADERWQQLPILFLSVHDEDHTQHQAFNVGADDFISKTTM 617 >gi|297154252|gb|ADI03964.1| two component system transcriptional regulator PhoP [Streptomyces bingchenggensis BCW-1] Length = 249 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 46/229 (20%), Positives = 98/229 (42%), Gaps = 14/229 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++ + G G + + R D+ ++ L Sbjct: 13 ILVVEDDPGIRLLLESALGLSGYQVSSAATGHDALLGVERFRPDLLLLDVML--PDLDGF 70 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +RA + P++ ++ + + +G DD V KP E+L R+ AI RR Sbjct: 71 EVTRSLRAVGVRTPVLFLTARTEVGDRIAGLGAGGDDYVGKPFSIEEVLLRIRAILRRTG 130 Query: 121 VSNNRAE---------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + + + G+ PL E ++L +LM N + ++K+ Sbjct: 131 HDVPYEMGEDEAEVLRYADLELDERAHEVHRAGQYIPLSPTEFKLLAFLMENPNRVLSKS 190 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 QI ++G +D + + +VE+++ LR+K+ + L + ++R +GY + Sbjct: 191 QILDRVWG-YDFSGDGRIVETYVRYLRRKI-DHLDPPLIHTQRGVGYCL 237 >gi|255283380|ref|ZP_05347935.1| DNA-binding response regulator PhoP [Bryantella formatexigens DSM 14469] gi|255266028|gb|EET59233.1| DNA-binding response regulator PhoP [Bryantella formatexigens DSM 14469] Length = 249 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 43/221 (19%), Positives = 92/221 (41%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ +D+ + + S++ + D ++ L Sbjct: 22 ILVAEDQRDMNRLISNRLAAEHYSVDSCFDGQEALDYLECTEYDAVILDIM--MPVMDGL 79 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119 ++ R +R + P++ ++ S++ + D+G DD + KP E+LAR+ + + Sbjct: 80 QVLRKLRQRKEHVPVLLLTAMDSIEDRVTGLDAGADDYLVKPFAFEELLARLRVMLRKPA 139 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 V N G + V D + G+ L +E IL Y++ N G +++ ++ I+ Sbjct: 140 AVKTNICTVGDLEVHMDTQQVLRGGKEIKLSGKEFSILRYMVQNAGIVLSREKLEQHIW- 198 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D NV++ +I LRKK+ + + + R GY + Sbjct: 199 NYDYTGSSNVIDVYIRYLRKKIDDGYEKKLIHTVRGAGYVL 239 >gi|331268468|ref|YP_004394960.1| transcriptional regulatory protein [Clostridium botulinum BKT015925] gi|329125018|gb|AEB74963.1| transcriptional regulatory protein [Clostridium botulinum BKT015925] Length = 247 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 44/233 (18%), Positives = 98/233 (42%), Gaps = 17/233 (7%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D ++D ++G S++ ++ E + ++ D+ ++ L G Sbjct: 17 ILIIEDEENIRDILNYSLNNEGYSIKEASTGEEGIKIIENSNIDLIILDLML--PGISGY 74 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R I + ++P+I ++ + + + G DD + KP RE++AR+ RR+K Sbjct: 75 DVCREINPNYKIPIIMLTAKNDIVDKVIGLELGADDYITKPFDIREVIARIKVCLRRIKE 134 Query: 122 SNNRAETGPIRVFSDGRDP--------------EVQGEVFPLPRRERRILEYLMANRGKR 167 + + S E+ L +E +L +L N+ Sbjct: 135 LDKQYYEDKNGEDSQNIMKIDENIKIFIDSREIFKDEEIINLKPKEYDLLYFLARNKNIV 194 Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ Q+ I+G +D + V+ H+ ++RKKL + + +GY + Sbjct: 195 FSREQLLDDIWG-YDFLGDSRTVDVHVQRIRKKLGVTGKNSIIKTVFGVGYKM 246 >gi|321313923|ref|YP_004206210.1| two-component response regulator YcbM [Bacillus subtilis BSn5] gi|320020197|gb|ADV95183.1| two-component response regulator (YcbM) [Bacillus subtilis BSn5] Length = 230 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 40/227 (17%), Positives = 81/227 (35%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + + +G + E L D+ ++ L + Sbjct: 4 ILLVEDDHSISEMVDHYLTKEGFGIVYAFDGEEGIRLFQQGSYDLVLLDIML--PKLNGM 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI-------LARVAA 114 + +IIR S +P++ IS G DD + KP E+ + R Sbjct: 62 DFLKIIREKSNIPVLMISAKDGDVDKALGLGFGADDYIAKPFSMIELTARVKAAIRRATQ 121 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N + + D GE L E ++L +N K K QI+ Sbjct: 122 YSAEELAVNKVIRIHQLAIDVDNVSVLKNGEPLQLTSTEWQLLCLFASNPKKVFTKEQIY 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 +++ ++N++ H+ +LR+K+ + + + +GY + Sbjct: 182 RSVWNEEYFD-DQNIINVHMRRLREKIEDDPSSPQYIKTLWGIGYKL 227 >gi|255525277|ref|ZP_05392218.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296187784|ref|ZP_06856178.1| putative regulatory protein VanR [Clostridium carboxidivorans P7] gi|255511042|gb|EET87341.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296047741|gb|EFG87181.1| putative regulatory protein VanR [Clostridium carboxidivorans P7] Length = 229 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 38/229 (16%), Positives = 81/229 (35%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD +++ L +G ++ + E ++ D+ ++ + K Sbjct: 4 ILIADDNEEIREIVRVLLESEGYNVMEAVNGEDAV-IKVDKNIDLIILDIMMPIK--SGF 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARVA 113 + IR + P++ ++ F SG DD ++KP + E + Sbjct: 61 KACVEIREKTSAPILFLTAKTQDSDKCMGFSSGCDDYLSKPFSYTELVSRVKALLRRYYV 120 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + SN + + + + + L E RIL + NR K + + Sbjct: 121 YKGKEKVNSNEDINIDGLTINISSNEVFIDNKEIILTETEYRILLLMAQNRKKVFSAQNL 180 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 + +++ N + HI LR+KL + + GY I+ Sbjct: 181 YESVWKEPYFYSCNNTIMVHIRNLRRKLEREPQNPKYIKTVWGKGYRIE 229 >gi|196036337|ref|ZP_03103735.1| DNA-binding response regulator [Bacillus cereus W] gi|195991129|gb|EDX55099.1| DNA-binding response regulator [Bacillus cereus W] Length = 223 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 41/226 (18%), Positives = 87/226 (38%), Gaps = 12/226 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +++ +G + + DV ++ L Sbjct: 3 ILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEG-PDVLILDVML--PDTDGY 59 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL R+ R +P++ ++ + L G DD V KP ++ E++ RV + RR+K Sbjct: 60 ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRVK 119 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEV-----FPLPRRERRILEYLMANRGKRVAKTQIFS 175 I P+ + L RE + + ++N + + ++ Sbjct: 120 KKEVTVSHEVIEAGEITICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 179 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G F+ V+ + +LRKKL + + + +GY +D Sbjct: 180 KVWG-FEYIGNTRAVDIMVQRLRKKLGTSG--EYIKTIYGVGYKLD 222 >gi|94971080|ref|YP_593128.1| two component transcriptional regulator [Candidatus Koribacter versatilis Ellin345] gi|94553130|gb|ABF43054.1| two component transcriptional regulator, winged helix family [Candidatus Koribacter versatilis Ellin345] Length = 226 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 45/224 (20%), Positives = 87/224 (38%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D A V+ F G + + ++ L G+ Sbjct: 4 ILVIEDDATVQKALRRTFESAGFEVVVAPDGATAVQTFQATSPRAVLLDLRL--PGKSGQ 61 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR--- 117 ++ R IR S P++ +S + + + G DD V KP RE+LARV R Sbjct: 62 DICREIRGFSPNVPILVLSAASDVVDKVLLLELGADDYVTKPFSPRELLARVRTALRRLI 121 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 I+V + G+ L +E ++L + + N+ + V++ ++ + + Sbjct: 122 PSIDKQEVYNFDEIQVDFGKMELLRSGQPVALTPQEFKMLRFFLNNKDRVVSRNELLNEV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 +G + V++HI +LR+KL + + GY Sbjct: 182 WG-YHSYPTTRTVDTHILRLRQKLERDPADPIHFRTVHGTGYKF 224 >gi|21223763|ref|NP_629542.1| two-component system response regulator [Streptomyces coelicolor A3(2)] gi|256785143|ref|ZP_05523574.1| two-component system response regulator [Streptomyces lividans TK24] gi|289769037|ref|ZP_06528415.1| two-component system response regulator [Streptomyces lividans TK24] gi|6808396|emb|CAB70633.1| probable two-component system response regulator [Streptomyces coelicolor A3(2)] gi|289699236|gb|EFD66665.1| two-component system response regulator [Streptomyces lividans TK24] Length = 222 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 43/224 (19%), Positives = 92/224 (41%), Gaps = 11/224 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G +++ + D+ ++ L G Sbjct: 3 LLIVEDEKRLAVSLAKGLTAEGYAVDVVHDGLEGLHRAGEGVYDLVILDIML--PGLNGY 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117 + +RA P++ ++ + D+G DD + KP + ++ARV Sbjct: 61 RVCAALRAAGHDVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARVKALLRRRG 120 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + ++ G +RV + R + + L +E +LE L+ G+ V+K +I + Sbjct: 121 QGAGASPVHVHGDLRVDTAARRVFLGEDEATLTAKEFAVLEQLVVRAGQVVSKAEILEHV 180 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + F + N+VE ++S LR+KLR + + R GY ++ Sbjct: 181 WD-FAYDGDPNIVEVYVSALRRKLRA----GLIRTVRGAGYRLE 219 >gi|88807104|ref|ZP_01122616.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. WH 7805] gi|88788318|gb|EAR19473.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. WH 7805] Length = 265 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 40/230 (17%), Positives = 86/230 (37%), Gaps = 11/230 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +LI+D +++ G ++ + L D+ ++ L G + Sbjct: 5 ILLIEDDRDMRELVSGHLEHSGFDVQSAEDGIKGQALALQYSPDLILLDLMLPKVDGLTL 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R S +P++ ++ + + F+SG DD + KP E+ R+ A+ RR Sbjct: 65 CQRLRRDERTSGIPILMLTALGGTKDKVSGFNSGADDYLTKPFDLEELQVRIKALLRRSD 124 Query: 121 VSNNRAETGPIRVFSD--------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + + S + + L E +L L+ G+ VA + Sbjct: 125 RAPVGSSGNHHEILSYGPLTLVPERFEAIWFDKPVRLTHLEFELLHCLLQRHGQTVAPSL 184 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 I ++G ++ + + H+ LR KL + + + GY ++ Sbjct: 185 ILKEVWG-YEPDDDIETIRVHVRHLRTKLEPDPRKPRFIKTVYGAGYCLE 233 >gi|308068213|ref|YP_003869818.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Paenibacillus polymyxa E681] gi|305857492|gb|ADM69280.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Paenibacillus polymyxa E681] Length = 228 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 40/227 (17%), Positives = 82/227 (36%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD A +++ +G +E E DV ++ Sbjct: 5 ILIADDEASIRNALAYALKREGFLVETAVDGEDALEKVRLFHPDVLILDVM--MPKLGGY 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH------HREILARVAAI 115 E+ R + + + ++ ++ + + + G DD ++KP + L R Sbjct: 63 EVCRRLESRKGIGILLLTAKNDIVDKVLGLELGADDFMSKPFDLRELLARIKALVRRLER 122 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 GP+RV R E+ L +E +L L+++ G+ + ++ Sbjct: 123 EGAPAPEGTEVVLGPLRVRPSSRTAELGAIALDLTPKEFDVLALLVSHAGRVYTRDELLE 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 ++ FD V+ HI +LRKKL + + +GY + Sbjct: 183 QVWS-FDYVGGTRTVDIHIQRLRKKLE--PHQAILQTVYGIGYKAEK 226 >gi|229012775|ref|ZP_04169944.1| Two-component response regulator [Bacillus mycoides DSM 2048] gi|228748456|gb|EEL98312.1| Two-component response regulator [Bacillus mycoides DSM 2048] Length = 225 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 53/225 (23%), Positives = 97/225 (43%), Gaps = 10/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L++D +++ F ++G + + L + D+ ++ L Sbjct: 6 LLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELFAEHTIDLIMLDIML--PEIDGWS 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120 + R IR S VP+I ++ TL F+ G D+ V KP + ++AR + +R Sbjct: 64 VCRRIRKESAVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGA 123 Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 N I V R V GE L +E +L YLM N+G +++ + + Sbjct: 124 VGVSEENTMSLAGIEVNRLSRTVLVDGEEIILTHKEFELLVYLMENKGIVLSRQHLLDQL 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +G +D ++ V++HI KLR KL +K + + +GY + Sbjct: 184 WG-YDYYGDDRTVDTHIKKLRNKLGDK--ARHIGTVIRVGYKFEE 225 >gi|184200526|ref|YP_001854733.1| two-component response regulator MtrA [Kocuria rhizophila DC2201] gi|183580756|dbj|BAG29227.1| two-component response regulator MtrA [Kocuria rhizophila DC2201] Length = 228 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 45/220 (20%), Positives = 93/220 (42%), Gaps = 5/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A + + + + + ++ D+ ++ L G + Sbjct: 5 ILVVDDDAALSEMIGIILASEDFEPVYCYDGSSAREVFRASDPDLILLDLML--PGMDGI 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + IRA S VP++ ++ + ++G DD V KP E++ARV A R + Sbjct: 63 QVCQQIRAESDVPVVMLTAKSDTADVVRGLEAGADDYVPKPFKPAELVARVKARLRPMDR 122 Query: 122 SNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + T G I + G GE L E +L L + + ++ ++ ++G Sbjct: 123 GVTQEITLGDIVIDVTGHTVTRGGEEIFLTPLEFDLLATLARSPHQVFSRDELLRDVWG- 181 Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219 + A + +V H+ +LR K+ + + V + R +GY Sbjct: 182 YPHAADNRLVNVHVQRLRSKVERDPENPEVVLTVRGIGYK 221 >gi|229080343|ref|ZP_04212868.1| Two-component response regulator [Bacillus cereus Rock4-2] gi|228703012|gb|EEL55473.1| Two-component response regulator [Bacillus cereus Rock4-2] Length = 228 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 48/226 (21%), Positives = 90/226 (39%), Gaps = 11/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++++ ++G ++ + + + ++ L Sbjct: 5 ILIVEDEDILREIMKDYLLNEGYNVLEAMDGKEALSIFEEHEVHLIILDIML--PELDGW 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR------EILARVAAI 115 + R IR S VP+I ++ TL F+ G DD V KP + L Sbjct: 63 TVCRRIRKKSNVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLMESRYS 122 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + + I V R + GE L E I+ YLM N+G +++ Q+ + Sbjct: 123 SAVNVPAEDTLTSSGIHVHFPSRTVTIDGEDINLTHTEFEIVTYLMRNQGIVISREQLIN 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 I+G ++ A ++ V SHI LR KL K + + GY + Sbjct: 183 KIWG-YEFAGDDRTVNSHIRNLRHKLGQKAA--CIVTVVRAGYKFE 225 >gi|121595458|ref|YP_987354.1| osmolarity response regulator [Acidovorax sp. JS42] gi|222111672|ref|YP_002553936.1| osmolarity response regulator [Acidovorax ebreus TPSY] gi|120607538|gb|ABM43278.1| two component transcriptional regulator, winged helix family [Acidovorax sp. JS42] gi|221731116|gb|ACM33936.1| two component transcriptional regulator, winged helix family [Acidovorax ebreus TPSY] Length = 243 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 46/229 (20%), Positives = 93/229 (40%), Gaps = 14/229 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD A ++D +G + + + D+ ++ GE L Sbjct: 12 LVVDDDARIRDLLRRYLTQEGFEVMVAEDGKALNRILLRETVDLIVLDLM--MPGEDGLS 69 Query: 63 LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R +R A+ + P+I ++ + + G DD + KP + RE+LAR+ A+ RR Sbjct: 70 ICRRLRAANDRTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARIHAVLRRRPP 129 Query: 122 S---------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 N GP R + GE PL E +L+ L+ + + +++ + Sbjct: 130 QEAPGAPSGDNEVVTFGPFTFDLGTRALQKNGEELPLTTGEFAMLKALVRHPRQPLSREK 189 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + G + + ++ IS+LRK + + + + +GY Sbjct: 190 LALLARGR-EFEPFDRSLDVQISRLRKLVEVDAAAPRYIQTVWGVGYVF 237 >gi|325294901|ref|YP_004281415.1| two component transcriptional regulator, winged helix family [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065349|gb|ADY73356.1| two component transcriptional regulator, winged helix family [Desulfurobacterium thermolithotrophum DSM 11699] Length = 223 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 49/222 (22%), Positives = 94/222 (42%), Gaps = 9/222 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L++D + + + ++ + + D+ ++ L G L+ Sbjct: 4 LLVEDDEDLGELLKYNLEKNQFKVDWTLDGKEALEKIKTNSYDLIILDLML--PGASGLD 61 Query: 63 LPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 + + IR +S P+I ++ T + F G DD V KP +E+LAR+ A+ RR Sbjct: 62 ICKEIRENSINKDVPVIVLTALSDEDTKVKGFSIGADDYVTKPFSMKELLARIEAVLRRA 121 Query: 120 KVSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 E I + V G L + E ++LE+ + + + ++ ++ I+ Sbjct: 122 GYVRKAILEFDGIVYDKRSKSVTVDGNSIYLTKTEFQLLEFFLEHPEQLFSREELLEKIW 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G D V+ +IS+LRKKL +K + + LGY + Sbjct: 182 G-HDHNETTRTVDVYISRLRKKLGDKG--KYLKTLPRLGYKL 220 >gi|229046887|ref|ZP_04192519.1| Two-component response regulator [Bacillus cereus AH676] gi|229113338|ref|ZP_04242797.1| Two-component response regulator [Bacillus cereus Rock1-15] gi|228670102|gb|EEL25486.1| Two-component response regulator [Bacillus cereus Rock1-15] gi|228724432|gb|EEL75757.1| Two-component response regulator [Bacillus cereus AH676] Length = 233 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 51/227 (22%), Positives = 93/227 (40%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ ++G+ + L D+ ++ + Sbjct: 10 ILIVDDDKEIRNLISVYLENEGLKTQKVEDAIQALQLLEEKEFDLIILDIM--MPNMDGI 67 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E IR +P+I +S + SG DD ++KP + E++ARV + RR K Sbjct: 68 EACMKIREDRNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRRFKK 127 Query: 122 SNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N E V +D R V+G+ L +E ILE L N+G ++ +I+ Sbjct: 128 YNTSIEHNKSILEIGDLTVNTDTRQVWVRGKETRLTPKEFAILELLARNKGIVLSVAKIY 187 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220 A++ +N V HI+K+R K+ + + +GY I Sbjct: 188 EAVWKEV-FYKSDNTVMVHITKIRDKIEEDSKHPIYIKTVWGIGYKI 233 >gi|229063921|ref|ZP_04200222.1| DNA-binding response regulator [Bacillus cereus AH603] gi|229136075|ref|ZP_04264831.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196] gi|229169971|ref|ZP_04297664.1| DNA-binding response regulator [Bacillus cereus AH621] gi|228613489|gb|EEK70621.1| DNA-binding response regulator [Bacillus cereus AH621] gi|228647396|gb|EEL03475.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196] gi|228716391|gb|EEL68099.1| DNA-binding response regulator [Bacillus cereus AH603] Length = 224 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 43/226 (19%), Positives = 90/226 (39%), Gaps = 12/226 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +++ +G + + + DV ++ L Sbjct: 4 ILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERW-NEQPDVLILDVML--PDTDGY 60 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL R+ R +P++ ++ + L G DD V KP ++ E++ RV + RR+K Sbjct: 61 ELLRLFREKERDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRVK 120 Query: 121 VSNNRAETGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 I + R V G+ L RE + + ++N + + ++ Sbjct: 121 KKEVPLNHEVIGAGDLLICPKERKLHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 180 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G F+ V+ + +LRKKL + + + +GY +D Sbjct: 181 KVWG-FEYIGNTRAVDIMVQRLRKKLGASG--EYIKTIYGVGYKLD 223 >gi|199597921|ref|ZP_03211346.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus rhamnosus HN001] gi|258507247|ref|YP_003169998.1| two-component response regulator [Lactobacillus rhamnosus GG] gi|258538434|ref|YP_003172933.1| two-component response regulator [Lactobacillus rhamnosus Lc 705] gi|199591178|gb|EDY99259.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus rhamnosus HN001] gi|257147174|emb|CAR86147.1| Two-component response regulator [Lactobacillus rhamnosus GG] gi|257150110|emb|CAR89082.1| Two-component response regulator [Lactobacillus rhamnosus Lc 705] gi|259648613|dbj|BAI40775.1| two-component response regulator [Lactobacillus rhamnosus GG] Length = 228 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 42/227 (18%), Positives = 92/227 (40%), Gaps = 9/227 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + ++G S + D++ + ++ + Sbjct: 3 ILIVDDDKEIVELLSIYVKNEGYEPIQAYSGKEAITKL-VTNPDIALMILDIMMPNMSGM 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + +R SQ+P+I +S + + +G DD V KP + E++ARV ++ RR + Sbjct: 62 DVVKEVRKDSQIPIIIVSAKTADMDKIQGLITGADDYVTKPFNPLEVMARVKSLLRRSQN 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQG------EVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 +E + V + + L E IL L ++ + + +IF Sbjct: 122 EVTNSEPDVLEVGPLTIKKDSHEVTTLTGKQIQLTALEFGILYLLASHPNRVFSADEIFE 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 ++ + V V H+S LR K+ G +++ +GY ++ Sbjct: 182 RVW-QQESIVSAKTVMVHVSHLRDKIEEATDGEKVIETVWGVGYKVE 227 >gi|94971486|ref|YP_593534.1| two component transcriptional regulator [Candidatus Koribacter versatilis Ellin345] gi|94553536|gb|ABF43460.1| two component transcriptional regulator, winged helix family [Candidatus Koribacter versatilis Ellin345] Length = 230 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 44/220 (20%), Positives = 90/220 (40%), Gaps = 7/220 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LIDD + +G +E ++ E S + ++ L G L Sbjct: 4 ILLIDDDIELTSLLTDYLKSEGFEVEAVHNGEQGLQKALSGNYSIVVLDIML--PGISGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118 ++ R +R S++P++ ++ + + G DD V KP + RE + + + Sbjct: 62 DVLRRLRPQSRIPVLLLTARGEDVDRIVGLELGADDYVPKPFNTRELLARIQAILRRVQG 121 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + G + + R + G+ E +L YL+ N G V + ++ + Sbjct: 122 GQTPGAIVNVGDVTLDPGARTVQRGGQKLDFTSVEFDLLRYLLENAGNVVPREELAERVL 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 G + + ++ HISK+R+KL ++ + + + R GY Sbjct: 182 GRR-FSPFDRSIDMHISKIRRKLLDESD-ELIKTVRGTGY 219 >gi|28798044|emb|CAD69002.1| beta-lactamase response regulator [Aeromonas hydrophila] Length = 224 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 49/221 (22%), Positives = 89/221 (40%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 L++D A + D I DG +E F+ + R D ++ L Sbjct: 6 IWLVEDEASIADTLIYALQTDGFEVEWFSLGQPLLARLEQTRPDFLILDVGL--PDISGF 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL + +RA PL+ ++ L + G DD V KP RE+ + R Sbjct: 64 ELCKQVRALCDTPLMFLTARSEEIDRLIGLEIGADDYVAKPFSPREV-RARVRVILRRSQ 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + + + G+ L R E +L+ LM G+ ++ Q+ ++ Sbjct: 123 PTTPPPSQLLALDEERARISFHGQPLALTRYEYLLLKTLMQAPGRVYSRQQLMDLVWSAA 182 Query: 182 DEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 E+++ V++HI +R KLR + + + R GYS++ Sbjct: 183 GESLD-RTVDTHIKTIRAKLRERDPHANLILTHRGFGYSLE 222 >gi|116622737|ref|YP_824893.1| two component transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116225899|gb|ABJ84608.1| two component transcriptional regulator, winged helix family [Candidatus Solibacter usitatus Ellin6076] Length = 250 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 51/223 (22%), Positives = 88/223 (39%), Gaps = 8/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + F G +E + D+ ++ L Sbjct: 27 ILLVEDDTELTSLMTDYFAQHGFQVEAAHDGRTGLARAIEGSFDLIILDVML--PVLDGF 84 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R S P+I ++ S + +SG DD + KP E+LAR+ A+ RR Sbjct: 85 EVLRQLRKRSATPVIMLTARISQSDRVAGLNSGADDYLPKPFGPDELLARIRAVLRRTGH 144 Query: 122 SNNRAETGPI----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 ++ R+ R GE + E ILE L+ + G+ V + ++ + + Sbjct: 145 TDAAPPQIVESAGLRIDPAARAVWDHGEAIEITSIEFDILEILVRSAGRTVTRDELTAVL 204 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 Y E ++ HIS LRKKL + + R +GY Sbjct: 205 YQRPATPYE-RSLDVHISHLRKKLERD-DRSVIRTIRGVGYQF 245 >gi|331002009|ref|ZP_08325529.1| hypothetical protein HMPREF0491_00391 [Lachnospiraceae oral taxon 107 str. F0167] gi|330411805|gb|EGG91210.1| hypothetical protein HMPREF0491_00391 [Lachnospiraceae oral taxon 107 str. F0167] Length = 225 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 45/222 (20%), Positives = 99/222 (44%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++ G + E + + D+ I ++ Sbjct: 6 ILVVDDEARMRKLVKDFLTIKGFIVLEAQDGEQALKVFDENK-DIKLILLDVMMPKLDGF 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120 E ++R +S+VP+I ++ + L + GVD+ + KP + ++ARV A+ R + Sbjct: 65 ETLEVLRQYSKVPVIMLTARSEERDELLGYKLGVDEYITKPFSPKILVARVEAVLRRTIG 124 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 S + G I + R + + L +E +L Y + N+G +++ +I S+++ Sbjct: 125 ESEEKLVAGAIEIDKVARSVYIDQKPVDLSFKEYELLTYFIENKGIALSREKILSSVW-N 183 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D + +++H+ KLR K+ + D + + +GY + Sbjct: 184 YDYFGDARTIDTHVKKLRAKMGERG--DYIKTVWGMGYKFEV 223 >gi|315221901|ref|ZP_07863812.1| response regulator receiver domain protein [Streptococcus anginosus F0211] gi|315188867|gb|EFU22571.1| response regulator receiver domain protein [Streptococcus anginosus F0211] Length = 232 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 43/222 (19%), Positives = 92/222 (41%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D A+++ + G + + + + ++ L Sbjct: 8 ILLVEDDAVIRQQVKKMLEQWGFEVVAVEDFMQVLTIFAKEEPHLVLMDIGLPL--FNGY 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 + IR S+VP++ +S + + G DD V KP + +LA+V Sbjct: 66 HWCQEIRKISKVPIMFLSSRYQAMDIVMAINMGGDDFVTKPFDNNVLLAKVQGLLRRSYE 125 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + E + + D +GEV L + E +IL L + G VA+ + ++ Sbjct: 126 FGTDQSLLEYHGVILNLKSMDMVYEGEVITLTKNEFQILRVLFEHSGSIVARDDLMKELW 185 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D +++N + ++++LRKKL + +++K+ +GY + Sbjct: 186 -NSDFFIDDNTLSVNVARLRKKLEEVGLKNFIETKKGIGYRL 226 >gi|258405968|ref|YP_003198710.1| two component transcriptional regulator, winged helix family [Desulfohalobium retbaense DSM 5692] gi|257798195|gb|ACV69132.1| two component transcriptional regulator, winged helix family [Desulfohalobium retbaense DSM 5692] Length = 236 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 44/227 (19%), Positives = 96/227 (42%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + G +G +E L ++ D+ ++ L Sbjct: 9 ILLVEDEESLAVGLQFNLQQEGYVVERAVDGREALTLFAAQEFDLIILDLML--PYVDGY 66 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAA 114 E+ R +RA S P++ ++ + + + ++G DD + KP H +E+ + + Sbjct: 67 EVAREVRAVSPQLPILMLTARTTAKDRIQGLEAGADDYLTKPFHLKELLLRVQGMLKRKQ 126 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 Y+ + G V + + E F L RE +L+YL+ + G+ V++ ++ Sbjct: 127 WYQDVTQQEPVVRFGENTVNFATLRAQTRKEEFQLTAREAMVLKYLIEHEGRVVSRKELL 186 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++ + V+ V++ I++LRK + + + S R +GY Sbjct: 187 ENVW-QVEGTVQTRTVDAFIARLRKYFEADPKHPEFITSVREVGYQF 232 >gi|332993804|gb|AEF03859.1| response regulator in two-component regulatory system with PhoQ [Alteromonas sp. SN2] Length = 224 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 59/224 (26%), Positives = 106/224 (47%), Gaps = 5/224 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ +D + + +L G S++ ++ E +L + D++ I+ L Sbjct: 3 ILIAEDDSRLLTQLDSLLQQHGYSVDLADNGEHALYLLNEYAYDLAIIDIGL--PKMDGF 60 Query: 62 ELPR-IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R + + P++ ++ Q ++ D+G DD + KP H+ E+LARV A+ RR Sbjct: 61 EVIRNARQEDIRCPVLILTARDRWQEKVEGLDAGADDYLTKPFHNEELLARVKALIRRAS 120 Query: 121 VSNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 N + + V L E +++EYLM N K V+KT++ IY Sbjct: 121 GQANPVIQFGPISLDTVAEEITVNDAPLELTAYEYKVMEYLMLNPQKVVSKTELTEHIYD 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 D ++ NV+E + +LRKKL + F P+++ R GY I+ N Sbjct: 181 Q-DFDLDSNVIEVFVGRLRKKLDPENSFKPIETLRGRGYRINRN 223 >gi|226326489|ref|ZP_03802007.1| hypothetical protein PROPEN_00337 [Proteus penneri ATCC 35198] gi|225205088|gb|EEG87442.1| hypothetical protein PROPEN_00337 [Proteus penneri ATCC 35198] Length = 235 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 41/222 (18%), Positives = 84/222 (37%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + I G D+ ++ L + + Sbjct: 10 ILIVEDEPKLAQLLIDYLQSSGYQTYWLADGAEVCHCVKQQHYDLILLDLML--PVKDGI 67 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120 + + +R S +P+I ++ L + G DD + KP RE++ARV + R + Sbjct: 68 TVCKELRQFSDIPIIMVTAKTEEVDRLLGLEIGADDYICKPYSPREVVARVKTLLRRFYR 127 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + + + ++ L E R+L+ L GK + + Q+ +Y Sbjct: 128 PQDIVQNDKLVVIDEQAYQIQYNNKILDLTTAEFRLLKALATQPGKILTRDQLMDHLYDD 187 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSID 221 + V + ++SHI LR+KL + + S GY + Sbjct: 188 Y-RIVTDRTIDSHIKNLRRKLEQLNDQIEFIRSIYGQGYRWE 228 >gi|193066637|ref|ZP_03047672.1| heavy metal response regulator [Escherichia coli E22] gi|293446346|ref|ZP_06662768.1| transcriptional regulatory protein YedW [Escherichia coli B088] gi|298381094|ref|ZP_06990693.1| two-component system response regulator YedW [Escherichia coli FVEC1302] gi|81244982|gb|ABB65690.1| putative 2-component transcriptional regulator [Shigella boydii Sb227] gi|192925712|gb|EDV80371.1| heavy metal response regulator [Escherichia coli E22] gi|291323176|gb|EFE62604.1| transcriptional regulatory protein YedW [Escherichia coli B088] gi|298278536|gb|EFI20050.1| two-component system response regulator YedW [Escherichia coli FVEC1302] Length = 239 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 50/219 (22%), Positives = 97/219 (44%), Gaps = 3/219 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D ++ + G ++ + +L + ++ L G Sbjct: 19 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIML--PGMDGW 76 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + +R Q P+I ++ S+ + DSG +D + KP E+LARV A R+ Sbjct: 77 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 136 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 N+ E +R+ S + L R+E ++L L + G+ + +T I S I+G+ Sbjct: 137 LNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 195 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + N V+ I +LR K+ + + + R +GYS Sbjct: 196 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 234 >gi|332185911|ref|ZP_08387658.1| response regulator [Sphingomonas sp. S17] gi|332014269|gb|EGI56327.1| response regulator [Sphingomonas sp. S17] Length = 239 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 42/229 (18%), Positives = 87/229 (37%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L+DD +++ G + ++ D+ ++ GE L Sbjct: 7 LLLVDDERSIREPLAVYLTKQGFRVTQAGDAASARTRLAAYAIDLVILDIM--MPGEDGL 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R I A S+VP+I ++ + + G DD V KP RE+ R + RR + Sbjct: 65 SLCRHIAATSEVPVILLTARAEETDRIVGLEMGADDYVVKPFSPRELATRAKVVLRRTQA 124 Query: 122 SNNRAETGPIRVFSDGRD---------PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 R ++ + +G L E +L L++ + + + Q Sbjct: 125 GGARVHAPDSGSYAFAGWVLKSGERSLVDREGVSVMLSTGEYNLLLALVSRPRQVLTRDQ 184 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + G A + +++ +S+LR+K+ + + + + GY++ Sbjct: 185 LLDLTQGREAAAFD-RAIDNQVSRLRRKIEADPKSPEIIKTVWGGGYTL 232 >gi|322806627|emb|CBZ04196.1| DNA-binding response regulator [Clostridium botulinum H04402 065] Length = 235 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 38/228 (16%), Positives = 80/228 (35%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + +G + ++ + Sbjct: 6 ILIVEDDVNINNMIKESLIKEGYDTGQAFHGLEAVEKFQGENYHMVIMDVM--MPVMDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI--------HHREILARVA 113 E R IR S+VP+I +S + G DD + KP I + Sbjct: 64 ESMRRIREKSKVPIIILSAKGEDSDKIIGLGMGADDYIVKPFSVPELVARVKCNIRRAIY 123 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + N E G ++ + +G+ L +E +IL+ N + K QI Sbjct: 124 YNETKSIKENKIYEYGDVKFDMNNYTVTKRGKELTLTAKEIKILKLFFENPNRVFTKVQI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 + +++G + + N V H+ +LR K+ + +++ +GY + Sbjct: 184 YDSVWGE-EFLSDYNTVTVHMRRLRSKIEDDPNNPKLIETVWGIGYKL 230 >gi|256618610|ref|ZP_05475456.1| two-component system response regulator [Enterococcus faecalis ATCC 4200] gi|256598137|gb|EEU17313.1| two-component system response regulator [Enterococcus faecalis ATCC 4200] gi|315171705|gb|EFU15722.1| response regulator receiver domain protein [Enterococcus faecalis TX1342] Length = 227 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 44/224 (19%), Positives = 87/224 (38%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + A + S+ + S D+ ++ L L Sbjct: 3 ILIVDDEVKILEVIDAYLVANKFSVYKATNGSMALSKFESINPDLVVLDLML--PDTDGL 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R IR S +P+I ++ + L G DD + KP +E++AR+ + RR + Sbjct: 61 TVCRKIRESSNIPIIMLTAKSDEEDILTGLQLGADDYMVKPFSPKELVARIQTVLRRSET 120 Query: 122 SNNRAETGPIR----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 N + + ++ D R + L E IL L + K ++ + I Sbjct: 121 LLNPNKLSINKGELLIYPDSRQVYLHQIELNLTTTEFDILYTLASTPNKVFSRGDLIEKI 180 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 G+ + + ++SHI LR K+ + + + + GY Sbjct: 181 KGI-EFDGLDRSIDSHIKNLRHKIESDPKTPNYILTVHGTGYRF 223 >gi|229593016|ref|YP_002875135.1| DNA-binding response regulator CreB [Pseudomonas fluorescens SBW25] gi|229364882|emb|CAY52950.1| two-component system, response regulator [Pseudomonas fluorescens SBW25] Length = 222 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 54/218 (24%), Positives = 97/218 (44%), Gaps = 7/218 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A + D I +G + + + Q D+ ++ L Sbjct: 4 ILIVEDEAAIADTLIFALQGEGFTTTWLSLGQEALAYQRQTPADLVILDIGL--PDITGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E + +R S+VP++ +S + + G DD V KP RE+ ARV AI +R+ Sbjct: 62 ETCKQLRRFSEVPVMFLSARDGEIDRVVGLEIGADDYVVKPFSPREVTARVRAILKRIGP 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 S +V + + + L R E R+L+ L+ + ++ Q+ A+ G+ Sbjct: 122 SA---APAVFQVDLERMQISYRSQPLSLTRHEFRLLQSLLEQPERVFSREQLLDAV-GVA 177 Query: 182 DEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGY 218 +A E ++SHI LR KLR+ +P+ + R LGY Sbjct: 178 ADAGYERNIDSHIKSLRSKLRSVAADAEPIQTHRGLGY 215 >gi|170724028|ref|YP_001751716.1| DNA-binding response regulator CreB [Pseudomonas putida W619] gi|169762031|gb|ACA75347.1| two component transcriptional regulator, winged helix family [Pseudomonas putida W619] Length = 226 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 52/219 (23%), Positives = 91/219 (41%), Gaps = 5/219 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A + D I +G S Q D+ ++ L Sbjct: 4 ILIVEDEAAIADTLIYALQAEGHSTAWVTLGTAALEQQRQRPADLVILDIGL--PDISGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R +R S+VP++ +S + + G DD V KP RE+ ARV AI +R+ Sbjct: 62 DTCRQLRRFSEVPVMFLSARDGEIDRVVGLEIGADDYVVKPFSPREVAARVRAILKRMAP 121 Query: 122 SNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + + + L R E R+L+ L+ + ++ Q+ A+ G+ Sbjct: 122 RVEPPAETALFQLDTLRMLISYRSQPLSLTRHEFRLLQCLLTQPQRVFSREQLLDAL-GV 180 Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGY 218 + E ++SHI LR KLR +P+ + R LGY Sbjct: 181 ASDVGYERTIDSHIKSLRAKLRQVAAHAEPIQTHRGLGY 219 >gi|160895572|ref|YP_001561154.1| two component transcriptional regulator [Delftia acidovorans SPH-1] gi|160361156|gb|ABX32769.1| two component transcriptional regulator, winged helix family [Delftia acidovorans SPH-1] Length = 241 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 48/227 (21%), Positives = 87/227 (38%), Gaps = 13/227 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + A DG+ + + L R D+ ++ L G ++ Sbjct: 15 LVVEDEPAIASILTAYLERDGLRSRMASDGQEALQLFRLLRPDLVLLDIHL--PGMDGID 72 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARVA 113 + R IR SQ P+I ++ L G DD V KP + E + Sbjct: 73 VLRAIRDDSQTPVIMVTALADDVDKLLALRLGADDYVVKPFNPPEVVARVRAVLRRTQAR 132 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + E + D E + PL E R+L L A + +++ + Sbjct: 133 KNPAPAPIRVGPIEIDAEAHSAVVYDNEGRALPLPLTLTEFRLLACLAAQPRRCFSRSHL 192 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 L + E V++SH+SKLR+KL+ +++ R +GY + Sbjct: 193 IEHC--LPESDALERVIDSHLSKLRRKLQLAGQEGLIETVRGIGYRL 237 >gi|323438700|gb|EGA96442.1| two-component response regulator [Staphylococcus aureus O11] Length = 219 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 44/219 (20%), Positives = 85/219 (38%), Gaps = 4/219 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + +++ + D+ ++ L L Sbjct: 4 ILIVEDEQNLARFLELELTHENYNVDTEYDGQDGLDKALIHYYDLIILDLML--PSINGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR P+I I+ + D G DD + KP E+ R + Sbjct: 62 EICRKIRQQQSTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEEL-LARIRAILRRQP 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + I + + V G L + E +L L N+ + + QI + ++G + Sbjct: 121 QKDIIDVNGITIDKNAFKVTVNGAEIELTKTEYDLLYLLAENKNHVMQREQILNHVWG-Y 179 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + VE NVV+ +I LR KL+ +++ R +GY I Sbjct: 180 NSEVETNVVDVYIRYLRNKLKPYDRDKMIETVRGVGYVI 218 >gi|229020479|ref|ZP_04177229.1| DNA-binding response regulator [Bacillus cereus AH1273] gi|229026706|ref|ZP_04183046.1| DNA-binding response regulator [Bacillus cereus AH1272] gi|228734600|gb|EEL85254.1| DNA-binding response regulator [Bacillus cereus AH1272] gi|228740814|gb|EEL91062.1| DNA-binding response regulator [Bacillus cereus AH1273] Length = 222 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 43/225 (19%), Positives = 92/225 (40%), Gaps = 11/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +++ +G + + + DV ++ L Sbjct: 3 ILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERW-NEQPDVLILDVML--PDTDGY 59 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL R+ R +P++ ++ + L G DD V KP ++ E++ RV + RR+K Sbjct: 60 ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMSRRVK 119 Query: 121 VSNNRAETGPI----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + R V+G+ L RE + + ++N + + ++ Sbjct: 120 KEVAVSHEVIRAGELVICPKERKVHVEGQEIQLTYREFNLCQLFVSNPQRVFMRDELLEK 179 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G F+ V+ + +LRKKL N + + + +GY +D Sbjct: 180 VWG-FEYIGNTRAVDIMVQRLRKKLGNSG--EYIKTIYGVGYKLD 221 >gi|170755642|ref|YP_001780597.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] gi|169120854|gb|ACA44690.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] Length = 240 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 43/227 (18%), Positives = 92/227 (40%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 ++IDD + + +G + +LE + D+ ++ L + Sbjct: 11 ILIIDDEEDIVRLIRTVLKKEGFQNIYYATNLEDGFKEFNKTEPDIVILDIML--PDGEG 68 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI------HHREILARVAA 114 EL + IR+ S+VP++ +S + F G DD + KP + + R + Sbjct: 69 YELCKTIRSKSKVPILFLSAKGEEIDKILGFAIGGDDYITKPFSTKELAYRVKAHLRRYS 128 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + N GP + + + GE+ L +E ++ + + + ++K +I Sbjct: 129 YVENVNEEKNILSFGPFELNISKAEFKKDGELIELKPKELALITFFAKHPNQIISKEKIC 188 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++G D +N + HI +LR+K+ + + + + LGY + Sbjct: 189 DNVWGE-DYYGFDNTIMVHIRRLREKIEKEPSRPEYLINVKGLGYKL 234 >gi|304407940|ref|ZP_07389590.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] gi|304342959|gb|EFM08803.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] Length = 234 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 36/229 (15%), Positives = 80/229 (34%), Gaps = 14/229 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + + L ++ G+ Sbjct: 7 ILVVDDDPSIVELLRDFLEYESFQVLTACDAAQALALFQQHPVHGIVLDVM--MPGQNGF 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--------LARVA 113 EL R IR+ S VP++ +S + G DD + K EI A Sbjct: 65 ELCRTIRSSSSVPILFLSARGEDVDKIRGLTLGGDDYIVKTASPGEIVARVKAVLRRSSA 124 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + ++ + G +++ R+ V G L RE +L+ + + + + Sbjct: 125 QQEQERSLAVLDYDEGRLQINLSTREVFVDGTSISLTPREFELLQLFVERPRQVFSYDHL 184 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 ++ + +++ V H+S+LR K+ + + + +GY + Sbjct: 185 IDKLW---EGVGDKHTVRVHLSRLRDKIESDPAQPRYLINVWGVGYRFE 230 >gi|169828380|ref|YP_001698538.1| two-component response regulator [Lysinibacillus sphaericus C3-41] gi|168992868|gb|ACA40408.1| two-component response regulator [Lysinibacillus sphaericus C3-41] Length = 212 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 36/217 (16%), Positives = 88/217 (40%), Gaps = 11/217 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD + F +G ++ + E + + D++ ++ + L Sbjct: 3 ILIADDELAMLKILQNYFQREGFTVFTATNGEEALAIFYQEKIDLAILDWM--MPKKDGL 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R ++ ++ ++ ++ + + G DD VNKP + + ++ R ++L Sbjct: 61 MVCREMKQTQKIKVLLLTARDTGEDEFQALAEGADDYVNKPFYPKVLIMRA----KKLLQ 116 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + + G L + E +L NR + + + Q+ ++GL Sbjct: 117 IEAIQQLQNVSFDVTSKRVWRAGIEIELTKTEFELLRIFSQNRRQILTRDQLLDLVWGL- 175 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 D + V++HI +LR+K+ + + + R +GY Sbjct: 176 DYMGDARTVDTHIRRLREKIGE----NIIQTHRGIGY 208 >gi|160934057|ref|ZP_02081444.1| hypothetical protein CLOLEP_02920 [Clostridium leptum DSM 753] gi|156866730|gb|EDO60102.1| hypothetical protein CLOLEP_02920 [Clostridium leptum DSM 753] Length = 234 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 42/230 (18%), Positives = 80/230 (34%), Gaps = 12/230 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +G + + S + I+ L Sbjct: 5 ILVVDDDKEIVQAIAINLEQEGFRVFKAYDGLEALEIAMSQDLQLIIIDVM--MPKLDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 IR P++ +S + G DD + KP + E++ARV + RR Sbjct: 63 SAVLKIRERKNFPIMILSAKSEDTDKVLGLSMGADDYLTKPFNSMELIARVKSQVRRYTT 122 Query: 122 SNNRAETG--------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + + R GE L E +I + L+ N G+ +I Sbjct: 123 LGDIHAKTGGKTIEIGRLCYDLETRSLFADGEPVHLTATESKIFDLLIRNAGRIFPAEEI 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 + ++ + E N V HI ++R+K+ N + + +GY I+ Sbjct: 183 YERVWNEPAFSAE-NTVMVHIRRIREKIELNPKEPEYLKVVWGIGYKIEK 231 >gi|170736223|ref|YP_001777483.1| two component heavy metal response transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|206562574|ref|YP_002233337.1| two-component regulatory system response regulator protein [Burkholderia cenocepacia J2315] gi|169818411|gb|ACA92993.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia cenocepacia MC0-3] gi|198038614|emb|CAR54574.1| two-component regulatory system, response regulator protein [Burkholderia cenocepacia J2315] Length = 227 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 41/221 (18%), Positives = 90/221 (40%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + G ++ + + D+ ++ L G+ Sbjct: 3 ILIVEDEPKTGAYLRKGLTEAGYVVDWVEDGITGQHQAETEEYDLLVLDVML--PGQDGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120 L + +R P++ ++ + + + G DD + KP E+ AR+ +I R Sbjct: 61 TLLQNLRRSKSTPVLFLTARDDVGDRVKGLELGADDYLAKPFDFVELTARIKSILRRGQP 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 +N + + R QG+ L +E +L LM G+ + + I S ++ + Sbjct: 121 RDSNTLRVADLELDLTRRKATRQGDTILLTAKEFALLWLLMRREGEILPRATIASQVWDM 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + NVV+S I +LR K+ + + + R +GY ++ Sbjct: 181 -NFNSDTNVVDSAIRRLRSKIDDAYEPKLIHTVRGMGYVLE 220 >gi|319892417|ref|YP_004149292.1| Putative response regulator ArlR [Staphylococcus pseudintermedius HKU10-03] gi|317162113|gb|ADV05656.1| Putative response regulator ArlR [Staphylococcus pseudintermedius HKU10-03] gi|323464480|gb|ADX76633.1| two-component response regulator ArlR [Staphylococcus pseudintermedius ED99] Length = 225 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 47/222 (21%), Positives = 85/222 (38%), Gaps = 7/222 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++I+D + F + +E D+ ++ L LE Sbjct: 5 LIIEDEQNLARFIELEFKHENYEVEVKYDGVSGLNRALQHDFDLILLDLML--PEMDGLE 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI----LARVAAIYRR 118 + + +R P+I I+ + + D G DD + KP E+ A + Sbjct: 63 VCKRLRTQKDTPIIMITAKGEIYDKVTGLDIGADDYIVKPFEIEELLARSRALIRRYSDE 122 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 N E I++ Q E L + E +L L N+ + + + QI ++ Sbjct: 123 NVSDTNVVEIDGIKIDKSAFHVTYQSEKLELTKTEFDLLLLLAENKNRVLHREQILDHVW 182 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G ++ VE NVV+ +I LR KL+ +++ R +GY I Sbjct: 183 G-YESEVETNVVDVYIRYLRNKLKRIDKQKLIETVRGVGYVI 223 >gi|300855748|ref|YP_003780732.1| putative two-component response regulator [Clostridium ljungdahlii DSM 13528] gi|300435863|gb|ADK15630.1| predicted two-component response regulator [Clostridium ljungdahlii DSM 13528] Length = 227 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 47/227 (20%), Positives = 94/227 (41%), Gaps = 10/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +D + +S E D+ ++ G+ Sbjct: 5 ILVVDDEEDIISFLRDSLEEDDYEVFTASSGEEALEKIKLY-PDLILLDIM--MPGKNGY 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ IR P+I ++ + + SG DD + KP R++ AR+ A RR K Sbjct: 62 EVCNDIRDIVSCPIIFLTAKGEERDIVKGLASGGDDYIQKPFSLRQLKARIHAHLRREKR 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFP-----LPRRERRILEYLMANRGKRVAKTQIFSA 176 + N +E + + + + L ++E I+E+L N G+ +K QI+ Sbjct: 122 NTNNSEKANLYFKNISINLRNREVYCNGQLVILTKKEFDIIEFLSVNCGQVFSKEQIYEK 181 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDW 222 ++G +D + V H+ K+R K++N + + + +GY + Sbjct: 182 VWG-YDAEGDSASVAEHVKKIRHKIQNFDPEEEYISTVWGVGYKWEK 227 >gi|255280864|ref|ZP_05345419.1| subtilin biosynthesis regulatory protein SpaR [Bryantella formatexigens DSM 14469] gi|255268801|gb|EET62006.1| subtilin biosynthesis regulatory protein SpaR [Bryantella formatexigens DSM 14469] Length = 240 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 48/221 (21%), Positives = 88/221 (39%), Gaps = 7/221 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + F G + + D+ ++ + Sbjct: 21 ILIVDDEPDIVEMLRCFFERRGYFVLTATDGAEALKKA-EQQPDMILLDVN--MPELDGM 77 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR P++ ++ + F +G DD + KP E+ ARVAA RR Sbjct: 78 EVCRRIRDFVPCPILFLTARIEESDRVQGFAAGGDDYILKPFSLAELEARVAAHLRRETR 137 Query: 122 SNN---RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 N + + R V E P++E I+E L AN G+ K +I+ ++ Sbjct: 138 RINGASVRFDKELSIDYSQRKVFVNKETLAFPKKEFAIIELLSANAGQVFDKERIYEKVW 197 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 G +D + +VV HI ++R +L + +++ GY Sbjct: 198 G-YDGEGDSSVVAEHIRRIRARLSAVTDREYIETVWGCGYK 237 >gi|298489896|ref|YP_003720073.1| winged helix family two component transcriptional regulator ['Nostoc azollae' 0708] gi|298231814|gb|ADI62950.1| two component transcriptional regulator, winged helix family ['Nostoc azollae' 0708] Length = 224 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 42/222 (18%), Positives = 85/222 (38%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + +G + D+ ++ L G L Sbjct: 4 ILLVEDEVKLARFIELELSYEGYQVSVAYDGLTALTAARQLNLDLIILDWML--PGVSGL 61 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118 E+ R +RA P+I ++ + + D+G DD V KP E+ R + Sbjct: 62 EICRRLRASGDKVPIILLTAKDEVSACVAGLDAGADDYVVKPFSLEELLARVRAHLRRSK 121 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 S + + + + + L +E +L+YL+ + + + + +I ++ Sbjct: 122 ETDSADILMFDDLSLNRSTGEVYRGQRLVELTAKEFDLLDYLLTHPRQVITRDRILEEVW 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G +D + NV+E +I LR KL + + R +GY + Sbjct: 182 G-YDFMGDSNVIEVYIRYLRLKLEANNEKRLLQTVRGVGYVL 222 >gi|191637032|ref|YP_001986198.1| Response regulator [Lactobacillus casei BL23] gi|301065366|ref|YP_003787389.1| OmpR family DNA-binding response regulator [Lactobacillus casei str. Zhang] gi|190711334|emb|CAQ65340.1| Response regulator [Lactobacillus casei BL23] gi|300437773|gb|ADK17539.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus casei str. Zhang] gi|327381059|gb|AEA52535.1| Two-component response regulator [Lactobacillus casei LC2W] gi|327384234|gb|AEA55708.1| Two-component response regulator [Lactobacillus casei BD-II] Length = 228 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 42/227 (18%), Positives = 91/227 (40%), Gaps = 9/227 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + ++G S + D++ + ++ + Sbjct: 3 ILIVDDDKEIVELLSIYVKNEGYEPIQAYSGKEAITKL-VTNPDIALMILDIMMPNMSGM 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + +R SQ+P+I +S + + +G DD V KP + E++ARV ++ RR + Sbjct: 62 DVVKEVRKDSQIPIIIVSAKTADMDKIQGLITGADDYVTKPFNPLEVMARVKSLLRRSQN 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQG------EVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 E + V + + L E IL L ++ + + +IF Sbjct: 122 EVTNTEPDVLEVGPLTIKKDSHEVTTLTGKQIQLTALEFGILYLLASHPNRVFSADEIFE 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 ++ + V V H+S LR K+ G +++ +GY ++ Sbjct: 182 RVW-QQESIVSAKTVMVHVSHLRDKIEEATDGEKVIETVWGVGYKVE 227 >gi|312143607|ref|YP_003995053.1| two component transcriptional regulator, winged helix family [Halanaerobium sp. 'sapolanicus'] gi|311904258|gb|ADQ14699.1| two component transcriptional regulator, winged helix family [Halanaerobium sp. 'sapolanicus'] Length = 225 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 44/223 (19%), Positives = 100/223 (44%), Gaps = 9/223 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++ + +D + + E L + ++ ++ + Sbjct: 4 ILIVEDEYKIRKIITSYLEED-YEVYEAENGEKALKLFADNNFNLIILDLMI--PKLSGE 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYR 117 ++ + IR SQ+P+I ++ S + +D F+ G DD + KP RE+ AR+ Sbjct: 61 KVCQKIRQSSQIPIIMLTAKSSEENKIDGFNYGTDDYITKPFSPRELKARIKAVLRRSND 120 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 K S + G I+++ + + + L E +IL L+ N + +++ Q+ + + Sbjct: 121 SNKASIITLKDGNIKIYPEEMVVKQDNDNCDLTSTEFKILMELINNARQVLSREQLANKV 180 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 GL + + + +++HI +RKKL+ K + + + GY Sbjct: 181 MGL-EFSGFDRTIDTHIKNIRKKLKLKKD-EYIVTVYGAGYKF 221 >gi|262373903|ref|ZP_06067180.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter junii SH205] gi|262310914|gb|EEY92001.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter junii SH205] Length = 240 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 51/233 (21%), Positives = 97/233 (41%), Gaps = 17/233 (7%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 + ++D A + +G ++ N+ S D ++ L + Sbjct: 7 ILCVEDEAAIILPLRYALEREGWNVSWANTGAQALQYLSEQAFDFIILDVGL--PDQNGF 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + +R Q PL+ ++ + + G DD KP REI+AR+ AI+RR+++ Sbjct: 65 EVCKQLRQKYQTPLLFLTARDDEIDRVVGLEIGADDYCTKPFSAREIVARIKAIWRRMEI 124 Query: 122 SNNRAETGP-------------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 + P + G++ L R E R+L L+ + K Sbjct: 125 QAQNISSQPSISKVEIPLQSATWTCNPQSLQIQYHGQILQLTRYEYRLLFLLIQHPEKVF 184 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220 ++ Q+ I+ + ++E V++HI LR+KL+ DP+ + R GYS+ Sbjct: 185 SRQQLMDHIWEHPEHSLE-RTVDTHIKSLRQKLKQITPDDDPIRTHRGFGYSL 236 >gi|254785020|ref|YP_003072448.1| alkaline phosphatase synthesis PhoB family transcriptional regulator [Teredinibacter turnerae T7901] gi|237686037|gb|ACR13301.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Teredinibacter turnerae T7901] Length = 233 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 45/230 (19%), Positives = 94/230 (40%), Gaps = 14/230 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D+ + + ++ + L + R D+ ++ L G L Sbjct: 5 ILVIEDQEEINELIALNLETLNYTVTRALDGDIGLNLSLNTRFDLIILDVML--PGIDGL 62 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR--------- 111 ++ + +R+ P++ ++ S + + G DD + KP RE+ AR Sbjct: 63 QICQKLRSAGVLTPILMLTAKKSEADRVVGLEVGADDYLTKPFSVRELQARVRALLRRVA 122 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 ++ G + + + + E L +E +L YL ++ G+ ++ Sbjct: 123 FNTQETNPTAGPDQLVFGDLSINKNKHVVTLADEEIKLTAKEFDLLLYLASSPGQVFSRD 182 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 Q+ SA++G + + E+ V SHI++LR KL N V + +GY Sbjct: 183 QLLSAVWG-YHHSGYEHTVNSHINRLRAKLEPNASEPRYVLTVWGVGYKF 231 >gi|269120932|ref|YP_003309109.1| two component transcriptional regulator, winged helix family [Sebaldella termitidis ATCC 33386] gi|268614810|gb|ACZ09178.1| two component transcriptional regulator, winged helix family [Sebaldella termitidis ATCC 33386] Length = 223 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 40/221 (18%), Positives = 93/221 (42%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + +G + + D+ ++ L + Sbjct: 5 ILIIEDDPKISRLIEIELKFEGFEVSFAYDGKEGLNSAKYNSYDLIILDLML--PKMNGI 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA--AIYRRL 119 E+ + IR S+VP+I ++ + + D G DD + KP + E++AR+ + Sbjct: 63 EVCKRIREFSEVPIIMLTAKDEISDKVVGLDYGADDYMTKPFSNEELIARIKALIRRTKK 122 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + +++ + + L +RE +L+YL+ N+G +++ +I ++G Sbjct: 123 RNNQEEFVYEDLKINYSTYEVFRGETLISLSKREFELLDYLVLNKGIVLSRDKILENVWG 182 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 F+ +N+++ +I LR K+ + + R LG+ Sbjct: 183 -FEYIGNDNILDLYIKYLRDKIDKPYERKFIQTVRGLGFIF 222 >gi|21221504|ref|NP_627283.1| two-component system reponse regulator [Streptomyces coelicolor A3(2)] gi|256787308|ref|ZP_05525739.1| two-component system reponse regulator [Streptomyces lividans TK24] gi|289771203|ref|ZP_06530581.1| two-component system response regulator [Streptomyces lividans TK24] gi|7672246|emb|CAB89435.1| putative two-component system reponse regulator [Streptomyces coelicolor A3(2)] gi|289701402|gb|EFD68831.1| two-component system response regulator [Streptomyces lividans TK24] Length = 225 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 45/224 (20%), Positives = 87/224 (38%), Gaps = 6/224 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L +D A + + +G +E D+ ++ L G LE Sbjct: 5 LLAEDDASISEPLARALRREGYEVEVREDGPTAVDAGLQGGIDLVVLDLGL--PGMDGLE 62 Query: 63 LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-HREILARVAAIYRRLK 120 + R +R+ VP++ ++ T+ D+G DD V KP + A + R Sbjct: 63 VARRLRSEGHAVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAA 122 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 T +R+ + + E L +E +L L+ + G+ V + Q+ ++ Sbjct: 123 EPPQPPATHGVRIDVESHRAWMGEEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 182 Query: 181 FDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDWN 223 + ++ HIS LRKKL + + + R +G+ + N Sbjct: 183 TWWS-STKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEKN 225 >gi|317061728|ref|ZP_07926213.1| DNA-binding response regulator [Fusobacterium sp. D12] gi|313687404|gb|EFS24239.1| DNA-binding response regulator [Fusobacterium sp. D12] Length = 231 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 40/223 (17%), Positives = 91/223 (40%), Gaps = 6/223 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61 ++++D +++ F +G +E ++ D ++ L G ++ Sbjct: 9 LIVEDDLEIQNLIAYFFKKEGYEVEKASNGLEALKQLKKNSFDFLILDWMLPSLDGSQLT 68 Query: 62 ELPRIIRAHSQVPL-IGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-ILARVAAIYRRL 119 ++ R + P I ++ + L+ F G D+ V KP RE + + ++ Sbjct: 69 KIIREMPEEYGSPFVIMVTAKTETEDVLEGFTFGADEYVKKPFDPRELLARAKKLLQNKI 128 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S N + + +G L ++E +L L+ N+G + + +I ++G Sbjct: 129 PHSKNSFHFQSLILDDRKHLVTWEGIEVDLSKKEYDLLLTLLVNQGLVITREKILDEVWG 188 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + + V+ +ISKLR+KL + + + +GY ++ Sbjct: 189 ST-YYIGDRTVDVYISKLREKL--PGISTSIKTVKGVGYKLEE 228 >gi|251781809|ref|YP_002996111.1| response regulator [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390438|dbj|BAH80897.1| response regulator [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|322411154|gb|EFY02062.1| response regulator protein [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] gi|323126621|gb|ADX23918.1| response regulator protein [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 228 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 90/224 (40%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + +G + + D+ ++ L Sbjct: 5 ILIIEDEKNLARFVSLELQHEGYEVTVEVNGREGLETALEKDFDLILLDLML--PEMDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R ++ ++ ++ S+ + D G DD + KP E+LAR+ AI+RR + Sbjct: 63 EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122 Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + R + L +RE +L LM N + + + ++ S Sbjct: 123 ESEKKTPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLSILMTNMNRVMTREELLSN 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +DEAVE NVV+ +I LR K+ + + R +GY I Sbjct: 183 VW-KYDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225 >gi|229191256|ref|ZP_04318244.1| Two-component response regulator [Bacillus cereus ATCC 10876] gi|228592271|gb|EEK50102.1| Two-component response regulator [Bacillus cereus ATCC 10876] Length = 228 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 48/226 (21%), Positives = 90/226 (39%), Gaps = 11/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++++ ++G ++ + + + ++ L Sbjct: 5 ILIVEDEDILREIMKDYLLNEGYNVLEAIDGKEALSIFEEYEVHLIILDIML--PELDGW 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR------EILARVAAI 115 + R IR S VP+I ++ TL F+ G DD V KP + L Sbjct: 63 TVCRRIRKKSNVPIIMLTARVDEHDTLLGFELGADDYVTKPYSPPILLARAKRLMESRYS 122 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + + I V R + GE L E I+ YLM N+G +++ Q+ + Sbjct: 123 SAANVPAEDTLTSSGIHVHFPSRTVTIDGEDINLTHTEFEIVTYLMRNQGIVISREQLIN 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 I+G ++ A ++ V SHI LR KL K + + GY + Sbjct: 183 KIWG-YEFAGDDRTVNSHIRNLRHKLGQKAA--CIVTVVRAGYKFE 225 >gi|239620735|ref|ZP_04663766.1| DNA-binding response regulator [Bifidobacterium longum subsp. infantis CCUG 52486] gi|312132346|ref|YP_003999685.1| response regulator [Bifidobacterium longum subsp. longum BBMN68] gi|317481680|ref|ZP_07940714.1| response regulator receiver domain-containing protein [Bifidobacterium sp. 12_1_47BFAA] gi|322689647|ref|YP_004209381.1| two-component response regulator [Bifidobacterium longum subsp. infantis 157F] gi|322691608|ref|YP_004221178.1| two-component response regulator [Bifidobacterium longum subsp. longum JCM 1217] gi|239516311|gb|EEQ56178.1| DNA-binding response regulator [Bifidobacterium longum subsp. infantis CCUG 52486] gi|311773960|gb|ADQ03448.1| Response regulator [Bifidobacterium longum subsp. longum BBMN68] gi|316916912|gb|EFV38300.1| response regulator receiver domain-containing protein [Bifidobacterium sp. 12_1_47BFAA] gi|320456464|dbj|BAJ67086.1| two-component response regulator [Bifidobacterium longum subsp. longum JCM 1217] gi|320460983|dbj|BAJ71603.1| two-component response regulator [Bifidobacterium longum subsp. infantis 157F] Length = 240 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 48/235 (20%), Positives = 93/235 (39%), Gaps = 19/235 (8%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++DD + + + ++G + + D+ ++ L G Sbjct: 4 IFIVDDDQAIGEMLSLVLENEGFQTVTCLDGLRAVEMFPIVKPDLILLDVML--PGLDGT 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R IRA S VP+I ++ + ++G DD V KP E+LAR+ A +R K Sbjct: 62 GVARRIRATSNVPIIMLTAKSDTLDVVAGLEAGADDYVPKPFKVAELLARIHARFRIAKP 121 Query: 122 ---------------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166 + N E G I + G+ L E +L L A G+ Sbjct: 122 AAEDGATGGASGGNANVNHLERGSIVIDRLEHTATKDGKDLNLTPMEFELLFMLAAAAGE 181 Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 ++++ + ++G ++ + + +V H+ +LR K+ + V + R +GY Sbjct: 182 AISRSSLLKNVWG-YENSGDTRLVNVHVQRLRAKVEDDPENPQIVQTVRGIGYKF 235 >gi|120403380|ref|YP_953209.1| two component transcriptional regulator [Mycobacterium vanbaalenii PYR-1] gi|119956198|gb|ABM13203.1| two component transcriptional regulator, winged helix family [Mycobacterium vanbaalenii PYR-1] Length = 219 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 45/221 (20%), Positives = 91/221 (41%), Gaps = 8/221 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ +D V +G S+ + + D+ ++ L G Sbjct: 4 ILIAEDEPRVSSFVRKGLSSNGYSVTLVTDGRSAYFSARNGGFDLMLLDTDL--PGMDGF 61 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R +RA S +P++ + + T + G DD V KP ++LARV + Sbjct: 62 AVLRRLRADGSPLPVVMLMSRAGVADTTAALEEGADDYVVKPFRFEDLLARVRLRLTAGR 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 ++ G + + R V L RE ++ E + + G+ +++ Q+ + ++G Sbjct: 122 AASTTLAYGSLLLDLRTRRAHVGDYAVDLSARECKLAETFLRHPGQVLSREQLLNQVWGR 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D NVV+ ++ LR+KL G + + R +GY ++ Sbjct: 182 -DHETGSNVVDVYVRYLRRKL----GANRFATLRGMGYRLE 217 >gi|86741097|ref|YP_481497.1| two component transcriptional regulator [Frankia sp. CcI3] gi|86567959|gb|ABD11768.1| two component transcriptional regulator, winged helix family [Frankia sp. CcI3] Length = 283 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 42/220 (19%), Positives = 89/220 (40%), Gaps = 5/220 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D A ++G +++ W + D ++ L G E Sbjct: 33 LVVEDEARTAALLRRGLVEEGYAVDVVGDGADAVWQATEIGYDAIVLDLML--PGLDGFE 90 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R +R + P++ ++ + + D+G DD + KP E+ AR+ A+ RR V Sbjct: 91 VCRRLREAGRWAPVLMLTARGDVDDRIRGLDAGADDYLPKPFSFGELTARLRALVRRGAV 150 Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 R+ G L +E +L LM + + + +T I ++ Sbjct: 151 ERPTVLRIGDLRLDPAEHRVLRAGSPLDLSAKEFALLHLLMRHPDEVLTRTYIVDHVWD- 209 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 F N+V+ ++ +R+K+ G +++ R +GY + Sbjct: 210 FAFDGTSNIVDQYVRYVRRKIDIPDGPSLIETVRGVGYRL 249 >gi|56962170|ref|YP_173893.1| two-component response regulator [Bacillus clausii KSM-K16] gi|56908405|dbj|BAD62932.1| two-component response regulator [Bacillus clausii KSM-K16] Length = 222 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 52/223 (23%), Positives = 98/223 (43%), Gaps = 5/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D A + +G L N E + DV ++ L + Sbjct: 4 ILLIEDDAAIARYLELELKHEGFELIIENDGEGGLAKALLEKFDVILLDVML--PKISGI 61 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +R P+I ++ + + DSG +D + KP E+LAR+ I+R Sbjct: 62 EVLRRLRKSKETTPVILLTAKGEVSDKVTGLDSGANDYMTKPFFIEELLARIRVIFREKT 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 +N+ + D V+G+ L ++E +L YL+ NR +++ I ++G Sbjct: 122 TNNSLHWGEL-TMNPDTYQVIVKGQELGLTKKEYELLYYLLVNRNIALSRENIIENVWG- 179 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 ++ + N+V+ I +R+KL + + + + R +GY I N Sbjct: 180 YEYYGDTNIVDVFIKNIRRKLEDVMDVRMIQTIRGIGYVIKDN 222 >gi|311278928|ref|YP_003941159.1| two component transcriptional regulator, winged helix family [Enterobacter cloacae SCF1] gi|308748123|gb|ADO47875.1| two component transcriptional regulator, winged helix family [Enterobacter cloacae SCF1] Length = 240 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 42/224 (18%), Positives = 83/224 (37%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + I + + + + + ++ L G L Sbjct: 13 ILIVEDEPKLGQLLIDYLLAANYAPTLISHGDKVLPYVHQSPPALILLDLML--PGTDGL 70 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118 L R IR S VP++ ++ L + G DD + KP RE + + R Sbjct: 71 TLCREIRRFSDVPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRCRP 130 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + P+ V + ++ L E R+L+ L GK ++ Q+ + +Y Sbjct: 131 HRELQAMDAESPLIVDESRFQASWRNKLLDLTPAEFRLLKTLSQEPGKVFSREQLLNHLY 190 Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + V + ++SHI LR+KL + + +GY + Sbjct: 191 DDY-RVVTDRTIDSHIKNLRRKLEALDAEQSFIRAVYGVGYRWE 233 >gi|304406662|ref|ZP_07388317.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] gi|304344195|gb|EFM10034.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] Length = 229 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 50/223 (22%), Positives = 91/223 (40%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++DD + +G + N + L + D+ ++ Sbjct: 5 IFVVDDDEKITSLLRRSLAFEGYEVTIANDGQEGLKLMGQSDPDLLILDVM--MPQMDGW 62 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +R S VP++ ++ +Q + D G DD + KP E+LARV A+ RR Sbjct: 63 EVCRRVREAGSGVPVLMLTAMDDVQDRVKGLDLGADDYLVKPFALEELLARVRALLRRKP 122 Query: 121 VSNNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + + D R+ G L +E +L M N + + + I I Sbjct: 123 DRQETDGRLQFEDMTLDLDSREAIRGGRRIDLTAKEFDLLHLFMQNPRRVLTRDSIMDKI 182 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G +D + E NV+E +I+ LR+K + + + R GY + Sbjct: 183 WG-YDYSGESNVLEVYIAMLRQKTEDGTAKRLIQTVRGTGYVL 224 >gi|229092565|ref|ZP_04223721.1| Two-component response regulator [Bacillus cereus Rock3-42] gi|228690852|gb|EEL44627.1| Two-component response regulator [Bacillus cereus Rock3-42] Length = 225 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 53/225 (23%), Positives = 97/225 (43%), Gaps = 10/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L++D +++ F ++G + + L + D+ ++ L Sbjct: 6 LLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELFAEHEIDLIMLDIML--PEIDGWS 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR S VP+I ++ TL F+ G D+ V KP + ++AR + +R Sbjct: 64 VCRRIRKESAVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGV 123 Query: 123 NNRAETGPI-----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 AE + V R V GE L +E +L YLM N+G +++ + + Sbjct: 124 VGVAEENAMSLAGIEVNRLSRTVLVDGEEIILTHKEFELLVYLMENKGIVLSRQHLLDQL 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +G +D ++ V++HI KLR KL K + + +GY + Sbjct: 184 WG-YDYYGDDRTVDTHIKKLRNKLGEK--AKHIGTVIRVGYKFEE 225 >gi|191173324|ref|ZP_03034854.1| heavy metal response regulator [Escherichia coli F11] gi|190906441|gb|EDV66050.1| heavy metal response regulator [Escherichia coli F11] Length = 239 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 49/219 (22%), Positives = 97/219 (44%), Gaps = 3/219 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D ++ + G ++ + +L + ++ L G Sbjct: 19 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIML--PGMDGW 76 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + +R Q P+I ++ S+ + DSG +D + KP E+LARV A R+ Sbjct: 77 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 136 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 N+ E +++ S + L R+E ++L L + G+ + +T I S I+G+ Sbjct: 137 LNSTLEISGLKMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 195 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + N V+ I +LR K+ + + + R +GYS Sbjct: 196 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 234 >gi|114332048|ref|YP_748270.1| two component transcriptional regulator, winged helix family protein [Nitrosomonas eutropha C91] gi|114309062|gb|ABI60305.1| two component transcriptional regulator, winged helix family [Nitrosomonas eutropha C91] Length = 240 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 46/228 (20%), Positives = 92/228 (40%), Gaps = 11/228 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVL 61 ++++D +++ + + NS E + D+ ++ L+G G + Sbjct: 6 LVVEDEPAIQELIAYNLRNANYIVVCVNSAEQAVVKINEILPDLILLDWMLLGKSGIEFA 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 R +P+I ++ + ++G DD + KP RE++AR+ A+ RR Sbjct: 66 RSLRRDPRTRSIPVIMLTARVEEGDKVSGLEAGADDYITKPFSPRELIARIKAVLRRSLP 125 Query: 122 SNNRA---------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + RV ++ + + + E R+L +LMA+ + + Q Sbjct: 126 EASDEILNAEGVRLNPMTHRVTVINQEDGFREKELLVSPTEFRLLHFLMAHAERVHTRAQ 185 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + ++G VE+ V+ HI +LRK L D + + R GY Sbjct: 186 LLDRVWGDH-VFVEDRTVDVHIRRLRKVLEVAGKADLIQTVRGAGYRF 232 >gi|284921875|emb|CBG34950.1| two-component response regulator [Escherichia coli 042] Length = 239 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 50/219 (22%), Positives = 97/219 (44%), Gaps = 3/219 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D ++ + G ++ + +L + ++ L G Sbjct: 19 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIML--PGMDGW 76 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + +R Q P+I ++ S+ + DSG +D + KP E+LARV A R+ Sbjct: 77 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 136 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 N+ E +R+ S + L R+E ++L L + G+ + +T I S I+G+ Sbjct: 137 LNSSLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 195 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + N V+ I +LR K+ + + + R +GYS Sbjct: 196 NFDSDTNTVDVAIRRLRAKVDDPFPEKLISTIRGMGYSF 234 >gi|317127472|ref|YP_004093754.1| two component transcriptional regulator, winged helix family [Bacillus cellulosilyticus DSM 2522] gi|315472420|gb|ADU29023.1| two component transcriptional regulator, winged helix family [Bacillus cellulosilyticus DSM 2522] Length = 236 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 43/225 (19%), Positives = 86/225 (38%), Gaps = 10/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++I+D +++ + + + + ++ L G K E Sbjct: 6 LIIEDDEDIRELTALYLKKHSYEVFTAKDGYEGINIVQNNNPHLVLLDILL--PGMKGYE 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAIY 116 + + IR S+ P+I +S ++ + D+G DD + KP E+ R + + Sbjct: 64 ICQKIRMLSEAPIIFLSCKRDIRDKVKGLDAGADDYLTKPFDFTELEARIKANLRRSKMN 123 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 G + + D D +G L +E ++L L+ N+ + +I+ Sbjct: 124 ANRNEPKRVFSCGNLEIDLDSYDVFNKGNKVSLYTKELQLLMLLVENKNHVFSAEKIYDQ 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 I+G+ D + V HIS LR+K+ + + R GY Sbjct: 184 IWGI-DHCGDLKTVMVHISNLRRKIEENPSKPKLIKTVRGFGYKF 227 >gi|302545825|ref|ZP_07298167.1| DNA-binding response regulator PhoP [Streptomyces hygroscopicus ATCC 53653] gi|302463443|gb|EFL26536.1| DNA-binding response regulator PhoP [Streptomyces himastatinicus ATCC 53653] Length = 245 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 47/222 (21%), Positives = 82/222 (36%), Gaps = 8/222 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + G + + R D+ ++ L Sbjct: 19 ILVVDDESRIAELLSTTLELAGYQVGTAATGGEALDRVGRERPDLVILDVML--PDLDGF 76 Query: 62 ELPRIIRA--HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 + R + A P++ ++ SL + + G D V KP E+LARV + R Sbjct: 77 TVCRRLVAADEDHPPVLFLTARDSLDSLVTGLGIGGGDYVTKPFRIAEVLARVQVLLRGR 136 Query: 120 KVSNNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + E R L E R+L YL+ N G+ V+K QI Sbjct: 137 RRGVRAEEPPRYADLVLDDTTRQARRGRRALDLTPAEYRLLRYLLVNAGRVVSKEQIGEH 196 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++ A +N +E IS+LR K+ + ++R GY Sbjct: 197 LWFKDHRAYGDNAIEKLISRLRHKVDEA-EPALIHTRRGFGY 237 >gi|254994186|ref|ZP_05276376.1| two-component response regulator [Listeria monocytogenes FSL J2-064] Length = 220 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 39/220 (17%), Positives = 87/220 (39%), Gaps = 5/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +G + + + + ++ I+ Sbjct: 4 ILVVDDDRHILKLVGHYLRAEGFRVLEASDGVEARKNVETEQVHLAVIDVM--MPNMDGF 61 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119 EL + +R ++ +P+I ++ +L F+ G DD V KP E++ R+ A + R Sbjct: 62 ELCKKMRTSYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELIFRIRALLRRSN 121 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + S + G I + ++ + +P +E +L L + G+ + ++ I+ Sbjct: 122 QASEVKINIGNITIDQKSYGIKIGNQERMIPVKEFELLYQLASYPGRIFTREELIERIW- 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 D + V+ HI +LR + + + R +GY Sbjct: 181 QRDYDGSDRTVDVHIKRLRDHFDEEKDGIRIVTVRGVGYK 220 >gi|296121739|ref|YP_003629517.1| response regulator receiver [Planctomyces limnophilus DSM 3776] gi|296014079|gb|ADG67318.1| response regulator receiver [Planctomyces limnophilus DSM 3776] Length = 235 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 44/224 (19%), Positives = 86/224 (38%), Gaps = 11/224 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +LI+D + D +G + + + + D+ ++ L LE Sbjct: 7 LLIEDERSLIDILTYNLEKEGFEVTSASDGQDGLRRAQAMTPDLVILDLML--PVIDGLE 64 Query: 63 LPRIIRAHSQVPLI---GISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIY 116 + R +R+ ++P ++ + F+ G DD V KP + ++ R+ Sbjct: 65 VCRQLRSDPKLPNCRILMLTARAEEVDEIVGFNMGADDYVAKPFKVKPLIHRIKALLRRS 124 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + S + T I + + GE L E R+L L + G+ + ++ Sbjct: 125 QAGEQSRDVIVTRGIEIDRINHTARLNGEELHLTPTEFRLLWTLARSPGRPFGRNELMDR 184 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G D E ++ H+ LR+KL D V++ R +GY Sbjct: 185 CRGE-DANALERTIDVHVRSLRQKLGAL--ADIVETVRGVGYRF 225 >gi|227498888|ref|ZP_03929028.1| DNA-binding response regulator [Acidaminococcus sp. D21] gi|226904340|gb|EEH90258.1| DNA-binding response regulator [Acidaminococcus sp. D21] Length = 224 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 45/223 (20%), Positives = 91/223 (40%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G S++ + + A D+ ++ + L Sbjct: 3 ILVVEDEPSLNQIIAKRLKIEGYSVDQAENGRDALEFVALAEYDLLIVDI--LMPEMDGL 60 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L +R + VP++ ++ + + D+G DD + KP E+LARV A+ RR Sbjct: 61 TLVHTLREKNVTVPVLFLTALDGTEDKVKGLDAGGDDYLVKPFEFSELLARVRALLRRSG 120 Query: 121 VSNNRAETGPIRVF---SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + G+ L +E +LEYL+ N+G +++ +I Sbjct: 121 GTAVPKNELQLSDLVLSESAHTVTRGGKPIALTPKEFSVLEYLLRNQGIVLSRDKILEHA 180 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + F N+V+ +I LRKK+ + + + R GY + Sbjct: 181 WD-FSYEGASNMVDVYIKTLRKKIDHDFEPKLLHTVRGAGYVL 222 >gi|225414555|ref|ZP_03761744.1| hypothetical protein CLOSTASPAR_05778 [Clostridium asparagiforme DSM 15981] gi|225041911|gb|EEG52157.1| hypothetical protein CLOSTASPAR_05778 [Clostridium asparagiforme DSM 15981] Length = 234 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 48/224 (21%), Positives = 91/224 (40%), Gaps = 9/224 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +I+D +++ G E F + E ++ + L G + Sbjct: 4 IYIIEDDENIRNLLQIALEGFGYQAESFETAEEGLARMKEEPPSLAIFDWML--PGMDGI 61 Query: 62 ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 + + +R +P++ ++ + D G DD + KP E+ ARV ++ RR Sbjct: 62 QAIKEVRRTEGLKDLPVMVLTAREKELDKVVGLDCGADDYMVKPFGVLELSARVRSLLRR 121 Query: 119 LKVSNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + E IRV R+ G L +E +L YL+ N + V + ++ + Sbjct: 122 SRREDRSDELAFDGIRVNRRTREVNSGGRPVELTLKEYELLMYLLENCSRVVTRDELLNR 181 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I+G + E ++ HI LR+KL G + + R +GY + Sbjct: 182 IWG-YGYDGETRTLDMHIRTLRQKLGADGGA-CIRTVRGVGYRM 223 >gi|157429040|gb|ABB99942.2| hypothetical protein pCT0024 [Listeria monocytogenes] Length = 226 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 46/224 (20%), Positives = 86/224 (38%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + A + S+ S D+ ++ L L Sbjct: 3 ILIVDDEEKILEIIDAYLVANHYSVYKAISGAMALEKFEKNNPDLVVLDLML--PDTDGL 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R IR S VP+I ++ L G DD + KP +E++AR+ + RR + Sbjct: 61 TVCRKIREISNVPIIMLTAKSDEDDILTGLKLGADDYMLKPFSPKELVARIQTVLRRTET 120 Query: 122 SNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 +N + V+ D R + L E IL LM+ K +++ + + Sbjct: 121 LSNPNKLSSNNKELIVYPDSRQVYLHQVELNLTTTEFDILHALMSTPNKVFSRSDLIEKV 180 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 G+ + + ++SHI LR K+ + + + GY Sbjct: 181 KGI-EFDGLDRSIDSHIKNLRHKIENDAKSPMYILTVHGTGYRF 223 >gi|146309134|ref|YP_001189599.1| DNA-binding response regulator CreB [Pseudomonas mendocina ymp] gi|145577335|gb|ABP86867.1| two component transcriptional regulator, winged helix family [Pseudomonas mendocina ymp] Length = 226 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 51/220 (23%), Positives = 92/220 (41%), Gaps = 6/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A + D + +G + L + D++ ++ L Sbjct: 4 ILIVEDEAAIADTLVYALQAEGFVTRWSSLGGEALTLLENGAFDLAILDVGL--PDISGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + +R S+VP+I ++ + + G DD V KP RE+ ARV I +R+ Sbjct: 62 EVCKRLRRFSEVPVIFLTARSEEIDRVVGLEIGADDYVVKPFSPREVAARVKVILKRMAP 121 Query: 122 SNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++ G+ L R E R+L L+ + ++ Q+ A+ G Sbjct: 122 RETPAAGAASAFQIDDAAFCIHYHGQALSLTRHEFRLLRTLLGQPRRVYSREQLLDAL-G 180 Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGY 218 + E E ++SHI LR KLR +P+ + R LGY Sbjct: 181 VASEVGYERNIDSHIKSLRAKLRAIAPAEEPIQTHRGLGY 220 >gi|163940379|ref|YP_001645263.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163862576|gb|ABY43635.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] Length = 221 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 47/223 (21%), Positives = 91/223 (40%), Gaps = 9/223 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D +++ ++ + + D+ ++ Sbjct: 6 ILVVEDDQEIQELIKQFLMTQQYTVVVASDGLEGMTQFNKQSFDLILLDVM--MPNLNGF 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119 E+ ++IR+ S VP+I ++ + + FD G+DD + KP ++ RV A Sbjct: 64 EVSKMIRSQSNVPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSYD 123 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 K NN +R+ D V L +E IL+ L N K + + I ++G Sbjct: 124 KNVNNHLVFKEVRIDVDAYRVYVNDVEILLTIKEFEILQLLFQNERKVLTRENIVEKVWG 183 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D E ++++HI LRKKL + + + +GY ID Sbjct: 184 -YDYFGETRIIDTHIKNLRKKL----AIPYIKTIKGIGYKIDE 221 >gi|75761320|ref|ZP_00741297.1| Two-component response regulator vanRB [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74491192|gb|EAO54431.1| Two-component response regulator vanRB [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 228 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 44/223 (19%), Positives = 93/223 (41%), Gaps = 9/223 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D +++ + + + D+ ++ Sbjct: 13 ILVVEDDQEIQELIKQFLMTQQYKVIVASDGLEGMKQFNKQSFDLILLDVM--MPNLNGF 70 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119 E+ ++IR+ S +P+I ++ Q + FD G+DD + KP ++ RV A Sbjct: 71 EVAKMIRSQSNIPIIMLTALEEEQDQMKGFDLGIDDYITKPFSFHVLMRRVEAVLRRSNN 130 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + ++N + V D V PL +E IL+ L+ N K + + I I+G Sbjct: 131 QSTDNHFVFRELHVDGDAYKVYVNKVEVPLTTKEFEILQLLLRNEKKVLTRDNIVEKIWG 190 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 ++ A + ++++H+ +RKKL + + + +GY ID Sbjct: 191 -YEYAGDTRMIDTHMKNIRKKLDIP----YIKTVKGIGYKIDE 228 >gi|313837585|gb|EFS75299.1| response regulator receiver domain protein [Propionibacterium acnes HL037PA2] gi|314927535|gb|EFS91366.1| response regulator receiver domain protein [Propionibacterium acnes HL044PA1] gi|314972523|gb|EFT16620.1| response regulator receiver domain protein [Propionibacterium acnes HL037PA3] gi|328907809|gb|EGG27572.1| response regulator receiver domain protein [Propionibacterium sp. P08] Length = 237 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 42/223 (18%), Positives = 87/223 (39%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A + + + +G S + R + ++ L G + Sbjct: 11 ILVVDDDAALAEMLQLVLVKEGFSTVWVGHGRDVMDVFRERRPALVLLDLML--PGRDGI 68 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 ++ + IR S VP+I ++ + +G DD V KP E++AR+ Sbjct: 69 QICQDIRRESGVPIIMLTARSDTPDVVRGLGAGADDYVCKPFRSAELVARLRARLRTPAA 128 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + G + + ++ GE L E +L L + + ++ + ++ Sbjct: 129 QREEAGVITVGDLTIDPAAHVVQLGGEEISLTPLEYSLLLTLAQHPNQVFSRETLLREVW 188 Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 G + A + +V H+ +LR K+ N + + R +GY I Sbjct: 189 GYTNSA-DTRLVNVHVQRLRSKVERNADHPQMIITVRGIGYRI 230 >gi|293611083|ref|ZP_06693382.1| predicted protein [Acinetobacter sp. SH024] gi|292826735|gb|EFF85101.1| predicted protein [Acinetobacter sp. SH024] gi|325123407|gb|ADY82930.1| transcriptional regulator protein (OmpR family),response regulator in two-component regulatory system with BaeS, regulates RNA synthesis [Acinetobacter calcoaceticus PHEA-2] Length = 228 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 44/224 (19%), Positives = 92/224 (41%), Gaps = 7/224 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L++D + G + F+ + + ++ ++ + L Sbjct: 5 MLVEDEVELAHLVRDYLEAAGFEVSMFHDGQDAYASFQQRKPNLMILDLMV--PRMDGLT 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +R S +P+I ++ + + G DD V KP +E++ARV A+ RRL+ Sbjct: 63 ICRKVREQSDLPIIMVTARTEEIDRVLGLNMGADDYVCKPFSPKELVARVQAVLRRLERK 122 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 + R+ + Q + L E R+LE + + G+ ++ Q+ I Sbjct: 123 AEPEQNDSFRIDKAQQRIWYQQKSLSLTPTEFRLLELFLEHVGQVYSRAQLLDHI-NPDS 181 Query: 183 EAVEENVVESHISKLRKKLRNKLG----FDPVDSKRFLGYSIDW 222 V + V++SHI LR+K+ + + + +GY ++ Sbjct: 182 FDVADRVIDSHIKNLRRKISEAAETGNRHEWIQAVYGVGYRFEY 225 >gi|251797099|ref|YP_003011830.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247544725|gb|ACT01744.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 226 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 51/224 (22%), Positives = 100/224 (44%), Gaps = 9/224 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D L+++ F + + + L D+ ++ Sbjct: 5 ILLVEDDTLMREFITDYFKKEQWDVHEAENGRVALELFERVSVDLIVLDIM--MPEMDGW 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R IR S VP+I I+ + L F+ G D+ V KP+ R ++AR A+ +R + Sbjct: 63 SVCRRIREKSDVPIIMITARAEDEDQLMGFELGADEYVTKPLSPRVLVARANALMKRTER 122 Query: 122 SNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + R + G + V + V GE+ L +E +L +L+ + GK +++ I +A+ Sbjct: 123 TVGREAELLQYGELSVNREAHTVTVTGELINLSPKEYDLLLFLIKHDGKVLSRDYILNAV 182 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +G ++ + V++HI KLR KL + + + GY + Sbjct: 183 WG-YEYLGDLRTVDTHIKKLRAKLGDAG--KLIATVIRSGYRFE 223 >gi|42781734|ref|NP_978981.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|42737657|gb|AAS41589.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] Length = 224 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 49/223 (21%), Positives = 93/223 (41%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + D +G ++ D+ ++ L G + Sbjct: 4 ILIIEDEENLADFLELELKYEGYKVDIQFDGRKGLEAALETNYDLILLDLML--PGLNGI 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +RA P+I ++ S+ + DSG DD + KP E+LAR+ I+RR + Sbjct: 62 EVCRRLRATKNTPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARMRVIFRREEQ 121 Query: 122 SNNRAETGPIRVF----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 N+ + + R E L +E +L M N + + + + + Sbjct: 122 IENKHVSSLTFKDLQLQIESRTITKGNEEIELTNKEFELLLMFMKNINRVLTRDVLLDQV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G +D VE N+V+ ++ LR KL + + + + R GY + Sbjct: 182 WG-YDAMVETNIVDVYVRYLRNKLHSVDKEEYIQTVRGAGYIM 223 >gi|330810541|ref|YP_004355003.1| Response regulator, OmpR family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327378649|gb|AEA69999.1| putative Response regulator, OmpR family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 227 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 52/220 (23%), Positives = 91/220 (41%), Gaps = 5/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + G + + ++ ++ + ++ L G L Sbjct: 7 ILIVEDEPKLAALMRDYLIAAGYATQCLDNGLQVVPAVRASEPRLILLDLML--PGRDGL 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + +R+ S VP+I I+ L D G DD + KP RE++ARV AI RR Sbjct: 65 QVCQELRSFSAVPIIMITARVEEVDRLLGLDLGADDYICKPFSPREVVARVKAILRRSPQ 124 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 A + D + G L E R+L L + G+ ++ Q+ IY Sbjct: 125 LLVTAPARL-LIDEDRYQASLDGVALDLTPLELRLLRTLAQSPGRVFSRDQLLDRIYSDH 183 Query: 182 DEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220 V + V+SHI LR+KL +P++S +GY Sbjct: 184 -RVVTDRTVDSHIRNLRRKLEQACPAENPIESLYGVGYRF 222 >gi|290958392|ref|YP_003489574.1| two-component system response regulator [Streptomyces scabiei 87.22] gi|260647918|emb|CBG71023.1| two-component system response regulator [Streptomyces scabiei 87.22] Length = 235 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 44/233 (18%), Positives = 94/233 (40%), Gaps = 22/233 (9%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 + ++D ++++ DG ++ + R D++ ++ + G + Sbjct: 8 LFVEDDDVIREATQLALERDGFAVTAMPDGLSGLEAFRADRPDIALLDVMV--PGLDGVS 65 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R IR S VP+I +S + ++G DD V KP ++AR+ A+ RR + Sbjct: 66 LCRRIRDESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRRFGHA 125 Query: 123 NNRAETGPI---------------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167 + + ++G + G L E R+L + G Sbjct: 126 SGGDTRAEEAGAASTGGVLTFGELVIDTEGMEVLKSGVPVALTPTEMRLLLEFSSAPGTV 185 Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +++ ++ ++ + + VV+ H+ +LR K+ G D +++ R GY + Sbjct: 186 LSRDKLLERVWD-YGWGGDTRVVDVHVQRLRAKI----GQDRIETVRGFGYKL 233 >gi|254292563|ref|YP_003058586.1| transcriptional regulator [Hirschia baltica ATCC 49814] gi|254041094|gb|ACT57889.1| two component transcriptional regulator, winged helix family [Hirschia baltica ATCC 49814] Length = 230 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 52/226 (23%), Positives = 95/226 (42%), Gaps = 11/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 L+DD + + A F +G ++ ++ E + +++ ++ + Sbjct: 4 IALVDDDENIVESLKAFFEAEGYTVRAYHDGEAALQGLAEHPPELAILDV--KMPKMDGM 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL R +R S +P I ++ + F+ G DD + KP R + RV A+ RR + Sbjct: 62 ELLRRLRQTSNLPAIFLTSKDDEIDEVVGFNIGADDFIRKPCSMRLLSERVKAVLRRSRG 121 Query: 122 SNNRAETGPIRV-------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + E + + +GEV L E IL+ L G ++ Q+ Sbjct: 122 AGVSEEGDKKPIVRGSLTLDPNRHACTWKGEVVRLTVTEFLILQALSTRPGYVKSRDQLM 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYS 219 A Y V++ ++SHI +LRKK R+ FD +++ +GY Sbjct: 182 DAAYD-DQVYVDDRTIDSHIKRLRKKFRDQDDEFDSIETLYGVGYR 226 >gi|257791382|ref|YP_003181988.1| two component transcriptional regulator, winged helix family [Eggerthella lenta DSM 2243] gi|257475279|gb|ACV55599.1| two component transcriptional regulator, winged helix family [Eggerthella lenta DSM 2243] Length = 232 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 57/227 (25%), Positives = 88/227 (38%), Gaps = 10/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 + DD + D L + G F + Q+ D+ ++ G Sbjct: 7 IAVCDDEQAIADLVGQLLVEAGFVPTVFYAAPDLLACQADDPFDLVILDIM--MPGMDGF 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 R +R S VP+I ++ + F+ G DD V KP RE++ARV A RR Sbjct: 65 ACCRELRRTSSVPIIFLTAKDEEVDKVVGFELGADDYVVKPFKPRELVARVRARLRRATS 124 Query: 122 S-------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + E I + + GE L +E IL LM ++ + VA +F Sbjct: 125 NDVAREDGPGMLECCGIALDESAYTATLHGEALSLTPKEFAILACLMRDQSRPVASRDLF 184 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++G A N V HI LRKKL + V++ +GY + Sbjct: 185 ETVWGEIANAQSNNTVMVHIRHLRKKLAAVDSSQEFVETVWGVGYKL 231 >gi|227534581|ref|ZP_03964630.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239631045|ref|ZP_04674076.1| DNA-binding response regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|227187830|gb|EEI67897.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239527328|gb|EEQ66329.1| DNA-binding response regulator [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 246 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 42/227 (18%), Positives = 91/227 (40%), Gaps = 9/227 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + ++G S + D++ + ++ + Sbjct: 21 ILIVDDDKEIVELLSIYVKNEGYEPIQAYSGKEAITKL-VTNPDIALMILDIMMPNMSGM 79 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + +R SQ+P+I +S + + +G DD V KP + E++ARV ++ RR + Sbjct: 80 DVVKEVRKDSQIPIIIVSAKTADMDKIQGLITGADDYVTKPFNPLEVMARVKSLLRRSQN 139 Query: 122 SNNRAETGPIRVFSDGRDPEVQG------EVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 E + V + + L E IL L ++ + + +IF Sbjct: 140 EVTNTEPDVLEVGPLTIKKDSHEVTTLTGKQIQLTALEFGILYLLASHPNRVFSADEIFE 199 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 ++ + V V H+S LR K+ G +++ +GY ++ Sbjct: 200 RVW-QQESIVSAKTVMVHVSHLRDKIEEATDGEKVIETVWGVGYKVE 245 >gi|271961705|ref|YP_003335901.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270504880|gb|ACZ83158.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 222 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 47/221 (21%), Positives = 96/221 (43%), Gaps = 5/221 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L++D + D +G +++ + W+ S DV ++ L Sbjct: 4 LLVEDEKRLADLLKGGLAGEGFAVDVAHDGRDGLWMASENVYDVIVLDVML--PRMNGYT 61 Query: 63 LP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R+ A + P++ ++ + + D+G DD ++KP + +LAR+ A+ RR Sbjct: 62 VCARLRDAENWTPILMLTAKDGVHDEAEALDTGADDFLSKPFSYVVLLARLRALIRRGGR 121 Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + T V G L +E +L L G+ V+K+++ + + Sbjct: 122 ARPVSITVGDLTVDPAGLRCRRGEVEIALTPKEFAVLHGLARRPGEVVSKSELLAQAWD- 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 F + N+VE +IS LR+K+ + G + + R GY ++ Sbjct: 181 FSYDGDPNIVEVYISALRRKIDSPFGRSSLVTVRGAGYRLE 221 >gi|104782628|ref|YP_609126.1| transcriptional regulator of kdp operon [Pseudomonas entomophila L48] gi|95111615|emb|CAK16336.1| transcriptional regulator of kdp operon [Pseudomonas entomophila L48] Length = 231 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 45/223 (20%), Positives = 89/223 (39%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD ++ G + + + + D+ ++ L Sbjct: 7 LLVIDDEPQIRKFLRISLASQGYKVIEAATGGEGLTQAALNKPDLVVLDLGL--PDMDGQ 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R +R S VP++ +S S +D D G +D V KP +E LARV A+ R+ Sbjct: 65 QVLRELREWSAVPVMVLSVRASEVQKVDALDGGANDYVTKPFGIQEFLARVRALLRQAPQ 124 Query: 122 SNNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + T R ++G L R+E +L L + G+ + + Q+ I+ Sbjct: 125 VGSATSTASFGPLVVDFAFRKVTLEGVEVSLTRKEYALLAQLAGHPGRVITQQQLLKDIW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 G + + + + LR+KL + + ++ +GY + Sbjct: 185 GPTHVD-DTHYLRIVVGHLRQKLGDDPTAPRFIVTEAGVGYRL 226 >gi|83649242|ref|YP_437677.1| response regulator [Hahella chejuensis KCTC 2396] gi|83637285|gb|ABC33252.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Hahella chejuensis KCTC 2396] Length = 219 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 56/223 (25%), Positives = 97/223 (43%), Gaps = 9/223 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D L+ DG +++ S E + + ++ L L Sbjct: 3 ILLVEDDELLADGIQTSLSQQANTVDWVASGEAALHALKLEQFHLVILDLGL--PDIDGL 60 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + + +R +P++ +S +Q + D+G DD + KP E+ AR+ A+ RR Sbjct: 61 TVLKRLRDRGDEIPVLILSARDQVQDRVKGLDAGADDYLLKPFDVSELKARLRALSRRGS 120 Query: 121 VSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + IR+ E L RRE +L L ++RG+ ++K Q+ +YG Sbjct: 121 GNAHPEIQLANIRILPSSYQVYKSAEEVRLSRREYALLYELASHRGRVLSKDQLEELVYG 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 D V N +E HI LRKKL D + + R +GY I+ Sbjct: 181 WSD-DVSSNTMEVHIHNLRKKL----NPDLIKTVRGMGYMIEK 218 >gi|21241807|ref|NP_641389.1| two-component system regulatory protein [Xanthomonas axonopodis pv. citri str. 306] gi|78046628|ref|YP_362803.1| two-component system regulatory protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325926361|ref|ZP_08187691.1| phosphate regulon transcriptional regulatory protein PhoB [Xanthomonas perforans 91-118] gi|325927126|ref|ZP_08188393.1| phosphate regulon transcriptional regulatory protein PhoB [Xanthomonas perforans 91-118] gi|21107184|gb|AAM35925.1| two-component system regulatory protein [Xanthomonas axonopodis pv. citri str. 306] gi|78035058|emb|CAJ22703.1| two-component system regulatory protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325542509|gb|EGD13984.1| phosphate regulon transcriptional regulatory protein PhoB [Xanthomonas perforans 91-118] gi|325543254|gb|EGD14687.1| phosphate regulon transcriptional regulatory protein PhoB [Xanthomonas perforans 91-118] Length = 229 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 44/222 (19%), Positives = 82/222 (36%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +++DD ++D + + D+ ++ L G G + Sbjct: 5 ILIVDDEPAIRDMVAFALRKGEFEPIHAGDAREAQTAIADRVPDLILLDWMLPGTSGLDL 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118 R + ++P+I ++ + ++GVDD V KP RE+ R R Sbjct: 65 ARRWRKEQLTREIPIIMLTARGEENDRVGGLEAGVDDYVVKPFSARELLARIRAVMRRTR 124 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + G +R+ P+ E R+L + M + + +TQ+ ++ Sbjct: 125 EDDEDGSVAVGKLRIDGAAHRVFAGDAPVPIGPTEYRLLHFFMTHPERVYTRTQLLDHVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G VEE ++ HI +LRK L + V + R GY Sbjct: 185 GGSVY-VEERTIDVHIRRLRKTLEPFGLENMVQTVRGSGYRF 225 >gi|300022658|ref|YP_003755269.1| two component transcriptional regulator, winged helix family [Hyphomicrobium denitrificans ATCC 51888] gi|299524479|gb|ADJ22948.1| two component transcriptional regulator, winged helix family [Hyphomicrobium denitrificans ATCC 51888] Length = 262 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 46/221 (20%), Positives = 88/221 (39%), Gaps = 6/221 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++I+D ++G + + E L + DV ++ L L Sbjct: 40 LVIEDDRETAQFLQKSLKENGHTADLAGDGEAGLALATDGAYDVLIVDRMLPL--LDGLS 97 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119 + + +RA P++ +S + + +G DD + KP + E+ Sbjct: 98 VIKSLRAEGNRTPVLILSALGEVDDRVKGLRAGGDDYLTKPYAYSELLARVEALGRRTAP 157 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + R G + + GE L RE R+LEYLM + G+ V +T + ++ Sbjct: 158 EEQQTRISVGDLVLDRLSHRVTRSGEHILLQPREYRLLEYLMQHAGQVVTRTMLLEHVWD 217 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + NV++ H+S+LR K+ + + R GY+I Sbjct: 218 -YHFDPQTNVIDVHVSRLRAKIDKNFDKPLLHTVRGAGYTI 257 >gi|229060772|ref|ZP_04198127.1| Two-component response regulator [Bacillus cereus AH603] gi|228718419|gb|EEL70051.1| Two-component response regulator [Bacillus cereus AH603] Length = 228 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 49/226 (21%), Positives = 90/226 (39%), Gaps = 11/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++++ ++G ++ + + + ++ L Sbjct: 5 ILIVEDEDILREIMKDYLLNEGYNVLEAIDGKEALSIFEEHEVHLIILDIML--PELDGW 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR------EILARVAAI 115 + R IR S VP+I ++ TL F+ G DD V KP + L Sbjct: 63 AVCRRIRKKSNVPIIMLTARVDEDDTLLGFEMGADDYVTKPYSPPILLARAKRLIESRYS 122 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + + I V R V GE + E IL YLM N+G +++ Q+ + Sbjct: 123 STINVSTADTLTSSGIHVHFPSRTVTVDGEDISMTHTEFEILTYLMQNQGIVISREQLIT 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 I+G ++ A ++ V SHI LR KL K + + GY + Sbjct: 183 KIWG-YEFAGDDRTVNSHIRNLRHKLGEK--ATCIVTVVRTGYKFE 225 >gi|222152557|ref|YP_002561732.1| response regulator protein [Streptococcus uberis 0140J] gi|222113368|emb|CAR40995.1| response regulator protein [Streptococcus uberis 0140J] Length = 228 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 41/224 (18%), Positives = 84/224 (37%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G + + D+ ++ L Sbjct: 5 ILIVEDEKNLARFVSLELQHEGYEVTVEVNGREGLETALEKDFDLILLDLML--PEMDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAIY 116 E+ R ++ ++ ++ S+ + D G DD + KP R Sbjct: 63 EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 K + N+ + + R + L +RE +L LM+N + + + ++ S Sbjct: 123 ETEKKAPNQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMSNMNRVMTREELLSN 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +DEAVE NVV+ +I LR K+ + + R +GY I Sbjct: 183 VW-KYDEAVETNVVDVYIRYLRGKIDMPGRESYIQTVRGMGYVI 225 >gi|148660534|ref|YP_001282057.1| putative two component system response transcriptional positive regulator PhoP [Mycobacterium tuberculosis H37Ra] gi|148504686|gb|ABQ72495.1| putative two component system response transcriptional positive regulator PhoP [Mycobacterium tuberculosis H37Ra] Length = 247 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 46/224 (20%), Positives = 85/224 (37%), Gaps = 10/224 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD A + + G + + R D ++ G Sbjct: 24 LVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVM--MPGMDGFG 81 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPI-----HHREILARVAAIY 116 + R +RA P + ++ SLQ + G DD V KP R + A Sbjct: 82 VLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAGK 141 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + N R I + + + G+ L E +L Y + N G ++K +I Sbjct: 142 GNKEPRNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDH 201 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +D + NVVES++ LR+K+ + + + R +GY + Sbjct: 202 VW-RYDFGGDVNVVESYVLYLRRKI-DTGEKRLLHTLRGVGYVL 243 >gi|148654299|ref|YP_001274504.1| two component transcriptional regulator [Roseiflexus sp. RS-1] gi|148566409|gb|ABQ88554.1| two component transcriptional regulator, winged helix family [Roseiflexus sp. RS-1] Length = 229 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 50/226 (22%), Positives = 92/226 (40%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + +A DG + E R D+ L+ G L Sbjct: 5 ILVVEDEEPILNLVVAYLKADGFVVHTARDGESALQQAQIVRPDLVV--LDLLLPGIDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R ++ ++ ++ + G DD + KP RE++ARV AI RR + Sbjct: 63 EICRRLQHDGGPYVLMLTARAEEVDKVVGLSVGADDYLTKPFSPRELVARVKAILRRRRH 122 Query: 122 SNNRA------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + +++ R+ + +G L RE +L L A G+ + Q+ Sbjct: 123 TGAAPAENTLLTFRDLQIDVARREVQRRGVPVTLTAREFDLLYTLAAMPGRVFTREQLLE 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 ++G D + VV+ HIS LR+KL + + + R +GY Sbjct: 183 RVWG-HDFDGVDRVVDVHISLLRRKLEDDPAEPTLIQTVRGVGYKF 227 >gi|19553859|ref|NP_601861.1| two-component system, response regulator [Corynebacterium glutamicum ATCC 13032] gi|62391500|ref|YP_226902.1| two component response regulator [Corynebacterium glutamicum ATCC 13032] gi|145296659|ref|YP_001139480.1| hypothetical protein cgR_2566 [Corynebacterium glutamicum R] gi|21325434|dbj|BAC00056.1| Two-component system, response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Corynebacterium glutamicum ATCC 13032] gi|41326842|emb|CAF20686.1| putative two component response regulator [Corynebacterium glutamicum ATCC 13032] gi|140846579|dbj|BAF55578.1| hypothetical protein [Corynebacterium glutamicum R] Length = 241 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 49/225 (21%), Positives = 98/225 (43%), Gaps = 10/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + G + + R DV ++ L G LE Sbjct: 17 LIVEDERPLARMISLYLSKAGFDTTTIHDGAAAPDKVAHLRPDVVILDLGL--PGLDGLE 74 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + IRA + ++ ++ S + + + G DD + KP + RE++ R+ ++ RR + Sbjct: 75 VCKRIRAFTDCYILMLTARGSERDRITGLEIGADDYITKPFNIRELVIRIQSVMRRPRKI 134 Query: 123 NNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + G I + + + V+G L R E +L+ LM G+ V++ + S Sbjct: 135 DETIQNGLTLTYGHIELDTLAHEVTVKGVGVTLTRTEFELLQALMHKPGEAVSRRDLVSQ 194 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220 ++ +E +V+ HI LR+KL G +D+ R +GY + Sbjct: 195 VWDTT-WVGDERIVDVHIGNLRRKLEAPAPGSHFIDTIRGVGYRM 238 >gi|313890851|ref|ZP_07824475.1| response regulator ArlR [Streptococcus pseudoporcinus SPIN 20026] gi|332522247|ref|ZP_08398499.1| response regulator ArlR [Streptococcus porcinus str. Jelinkova 176] gi|313120749|gb|EFR43864.1| response regulator ArlR [Streptococcus pseudoporcinus SPIN 20026] gi|332313511|gb|EGJ26496.1| response regulator ArlR [Streptococcus porcinus str. Jelinkova 176] Length = 228 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 41/224 (18%), Positives = 83/224 (37%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G + + D+ ++ L Sbjct: 5 ILIVEDEKNLARFVSLELQHEGYEVTVEVNGREGLETALEKDFDLILLDLML--PEMDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAIY 116 E+ R ++ ++ ++ S+ + D G DD + KP R Sbjct: 63 EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 K + N+ + + R + L +RE +L LM N + + + ++ S Sbjct: 123 ETEKKAPNQGVYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +DEAVE NVV+ +I LR K+ + + R +GY I Sbjct: 183 VW-KYDEAVETNVVDVYIRYLRGKIDMPGRESYIQTVRGMGYVI 225 >gi|228997776|ref|ZP_04157380.1| Two component transcriptional regulator, winged helix [Bacillus mycoides Rock3-17] gi|229005316|ref|ZP_04163031.1| Two component transcriptional regulator, winged helix [Bacillus mycoides Rock1-4] gi|228755955|gb|EEM05285.1| Two component transcriptional regulator, winged helix [Bacillus mycoides Rock1-4] gi|228761908|gb|EEM10850.1| Two component transcriptional regulator, winged helix [Bacillus mycoides Rock3-17] Length = 215 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 39/219 (17%), Positives = 94/219 (42%), Gaps = 11/219 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++ DD + A F +G + E + + D++ ++ + Sbjct: 4 LIADDEQDMLKILKAYFEKEGFQVLLAKDGEEALEIFYEVKIDLAILDWM--MPKRNGIT 61 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + I+ +S V ++ ++ + L SG D+ V KP H +L R ++L Sbjct: 62 VCQEIKKNSSVKVLMLTAKSENEDELAALQSGADEYVKKPFHPGILLTRA----KKLLNQ 117 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 + + +++ + + + E +++ + ++G + + ++ ++G FD Sbjct: 118 DEVIQVQNLKIDLIKNKVYKSDKELEITKTELELIKCFLNHKGTILTREKLLDIVWG-FD 176 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +E V++H+ +LRKK+ D + + R LGYS++ Sbjct: 177 YFGDERTVDTHVRRLRKKIGE----DIIKTHRGLGYSLE 211 >gi|170758675|ref|YP_001786359.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] gi|169405664|gb|ACA54075.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] Length = 240 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 43/227 (18%), Positives = 91/227 (40%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 ++IDD + + +G + +LE + D+ ++ L + Sbjct: 11 ILIIDDEEDIVRLIRTVLKKEGFQNIYYATNLEDGFKEFNKVEPDIIILDIML--PDGEG 68 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI------HHREILARVAA 114 EL + IRA S+VP++ +S + F G DD + KP + + R + Sbjct: 69 YELCKTIRAKSKVPILFLSAKGEEIDKILGFAIGGDDYITKPFSTKELAYRVKAHLRRYS 128 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N GP + + + +G + L +E ++ + + + ++K +I Sbjct: 129 YVENANEEKNILSFGPFELNISKGEFKKEGSLIELKPKELALIAFFAKHPNQIISKEKIC 188 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++G D +N + HI +LR+K+ + + + + LGY + Sbjct: 189 DNVWGE-DYYGFDNTIMVHIRRLREKIEKEPSRPEYLINVKGLGYKL 234 >gi|24380274|ref|NP_722229.1| response regulator GcrR for glucan-binding protein C [Streptococcus mutans UA159] gi|290579753|ref|YP_003484145.1| response regulator GcrR for glucan-binding protein C [Streptococcus mutans NN2025] gi|24378286|gb|AAN59535.1|AE015017_1 response regulator GcrR for glucan-binding protein C [Streptococcus mutans UA159] gi|6174678|dbj|BAA85986.1| gcrR [Streptococcus mutans] gi|254996652|dbj|BAH87253.1| response regulator GcrR for glucan-binding protein C [Streptococcus mutans NN2025] Length = 230 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 87/228 (38%), Gaps = 9/228 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + +G +E D+ ++ L Sbjct: 5 ILIIEDEKKLAKFVSLELQHEGYEVEVTYDGRSGLERALEKDFDLILLDLML--PEMDGY 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115 E+ R ++ +I I+ S+ + D G D + KP E+ + R I Sbjct: 63 EVIRRLQLEKTTYVIIITARDSIMDIVTGLDRGADGYIVKPFAIEELLARVRAIFRRQDI 122 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + S N +++ R GE PL +RE +L L+ N + + + ++ + Sbjct: 123 EKAKHSSKNDTTYRDLKLDVHNRAAIRNGETIPLTKREFDLLNALVENINQVMTREELLA 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 ++ +D+ E NVV+ +I LR K+ + + R +GY I N Sbjct: 183 RVW-KYDQEAETNVVDVYIRYLRGKIDVPGKESYIQTVRGMGYIIREN 229 >gi|149365128|ref|ZP_01887163.1| putative two-component response regulator [Yersinia pestis CA88-4125] gi|165926923|ref|ZP_02222755.1| DNA-binding response regulator [Yersinia pestis biovar Orientalis str. F1991016] gi|165935925|ref|ZP_02224495.1| DNA-binding response regulator [Yersinia pestis biovar Orientalis str. IP275] gi|167422671|ref|ZP_02314424.1| DNA-binding response regulator [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167467549|ref|ZP_02332253.1| putative two-component response regulator [Yersinia pestis FV-1] gi|218930056|ref|YP_002347931.1| putative two-component response regulator [Yersinia pestis CO92] gi|229838602|ref|ZP_04458761.1| putative two-component response regulator [Yersinia pestis biovar Orientalis str. PEXU2] gi|229899168|ref|ZP_04514311.1| putative two-component response regulator [Yersinia pestis biovar Orientalis str. India 195] gi|115348667|emb|CAL21612.1| putative two-component response regulator [Yersinia pestis CO92] gi|149291541|gb|EDM41615.1| putative two-component response regulator [Yersinia pestis CA88-4125] gi|165916070|gb|EDR34677.1| DNA-binding response regulator [Yersinia pestis biovar Orientalis str. IP275] gi|165921274|gb|EDR38498.1| DNA-binding response regulator [Yersinia pestis biovar Orientalis str. F1991016] gi|166958378|gb|EDR55399.1| DNA-binding response regulator [Yersinia pestis biovar Orientalis str. MG05-1020] gi|229687570|gb|EEO79643.1| putative two-component response regulator [Yersinia pestis biovar Orientalis str. India 195] gi|229694968|gb|EEO85015.1| putative two-component response regulator [Yersinia pestis biovar Orientalis str. PEXU2] Length = 235 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 49/226 (21%), Positives = 90/226 (39%), Gaps = 11/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ +D A +++G + + +G + L + D ++ Sbjct: 3 ILIAEDNAHIRNGLMEVLAHEGYRPIAAENGVQALALYRQQQPDFIILDIM--MPELDSY 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ R IR H P+I +S + + G DD ++KP E+ AR+ I RR Sbjct: 61 KVCREIRKHDWQTPIIFLSAKDEEIDRVIGLELGADDYISKPFGIHEMRARIKTIVRRCL 120 Query: 121 VSNNR------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 G + VF + L RE IL YL ++G+ V + +F Sbjct: 121 RKVPESAEDAGFPFGDLMVFPNELCAIRGETRLELSLREVNILRYLYQHKGRVVTRDMLF 180 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219 A++G +D + ++ HISKLRK + + + + + GY Sbjct: 181 DAVWG-YDHLPQSRTLDQHISKLRKTIELDPVHPVLIRTVHGAGYR 225 >gi|332639012|ref|ZP_08417875.1| two-component response regulator [Weissella cibaria KACC 11862] Length = 229 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 44/228 (19%), Positives = 86/228 (37%), Gaps = 9/228 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + ++G + + D+ I ++ Sbjct: 3 ILIVDDDHEIAELLEIYVKNEGYEPVIASDGREAMTKIRTN-PDIGLIILDIMMPDMNGT 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + +R + VP++ +S + +G DD V KP + E++ARV A+ RR + Sbjct: 62 EVLKEVRKDNPVPILMLSAKSGAMDKIQGLITGADDYVTKPFNPLEVMARVRALLRRAQN 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF------PLPRRERRILEYLMANRGKRVAKTQIFS 175 +A + + + + L E IL L ++ + + IF Sbjct: 122 GMAQATPEVLDIGPLTINKDSHEVKTADGVEVNLTALEFGILYLLASHPNRVFSADDIFE 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222 ++ + V V H+S LR KL G V + +GY I+ Sbjct: 182 RVW-QQESVVSAKTVMVHVSHLRDKLEAATGGNQVVQTVWGVGYKIEV 228 >gi|291516211|emb|CBK69827.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bifidobacterium longum subsp. longum F8] Length = 240 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 48/235 (20%), Positives = 93/235 (39%), Gaps = 19/235 (8%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++DD + + + ++G + + D+ ++ L G Sbjct: 4 IFIVDDDQAIGEMLSLVLENEGFQTVTCLDGLRAVEIFPIVKPDLILLDVML--PGLDGT 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R IRA S VP+I ++ + ++G DD V KP E+LAR+ A +R K Sbjct: 62 GVARRIRATSNVPIIMLTAKSDTLDVVAGLEAGADDYVPKPFKVAELLARIHARFRIAKP 121 Query: 122 ---------------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166 + N E G I + G+ L E +L L A G+ Sbjct: 122 AAEDGATGGASGGNANVNHLERGSIVIDRLEHTATKDGKDLNLTPMEFELLFMLAAAAGE 181 Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 ++++ + ++G ++ + + +V H+ +LR K+ + V + R +GY Sbjct: 182 AISRSSLLKNVWG-YENSGDTRLVNVHVQRLRAKVEDDPENPQIVQTVRGIGYKF 235 >gi|257464207|ref|ZP_05628587.1| DNA-binding response regulator [Fusobacterium sp. D12] Length = 226 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 40/223 (17%), Positives = 91/223 (40%), Gaps = 6/223 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61 ++++D +++ F +G +E ++ D ++ L G ++ Sbjct: 4 LIVEDDLEIQNLIAYFFKKEGYEVEKASNGLEALKQLKKNSFDFLILDWMLPSLDGSQLT 63 Query: 62 ELPRIIRAHSQVPL-IGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-ILARVAAIYRRL 119 ++ R + P I ++ + L+ F G D+ V KP RE + + ++ Sbjct: 64 KIIREMPEEYGSPFVIMVTAKTETEDVLEGFTFGADEYVKKPFDPRELLARAKKLLQNKI 123 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S N + + +G L ++E +L L+ N+G + + +I ++G Sbjct: 124 PHSKNSFHFQSLILDDRKHLVTWEGIEVDLSKKEYDLLLTLLVNQGLVITREKILDEVWG 183 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + + V+ +ISKLR+KL + + + +GY ++ Sbjct: 184 ST-YYIGDRTVDVYISKLREKL--PGISTSIKTVKGVGYKLEE 223 >gi|227874892|ref|ZP_03993045.1| response regulator [Mobiluncus mulieris ATCC 35243] gi|227844667|gb|EEJ54823.1| response regulator [Mobiluncus mulieris ATCC 35243] Length = 229 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 53/228 (23%), Positives = 92/228 (40%), Gaps = 14/228 (6%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 M ++D ++D + G G G + + ++ ++ L G Sbjct: 1 MIYFVEDDRNIRDLVVYTLGSTGFEAFGCEDDKAFRAEMAKTPPELVLLDIML--PGTDG 58 Query: 61 LELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 +++ R ++A +P+I ++ + + D G DD V KP E+++RV A+ R Sbjct: 59 IQILRRLKADRSTADIPIIMVTARGAEFEKVKSLDLGADDYVTKPFGMMELVSRVRAVLR 118 Query: 118 RLKVSNNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 R S + I V GE L +E ++LE LM G ++ Sbjct: 119 RSSRSTQDSVEEEILTLGSISLNLSRHAVMVNGETVTLTLKEYQLLEELMTQPGFIFSRD 178 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 Q+ +I+G + E V+ HI LRKKL V + R +GY Sbjct: 179 QLLDSIWG-YSFHGETRTVDVHIRTLRKKLGE--AAKYVKTVRGVGYK 223 >gi|254526324|ref|ZP_05138376.1| two-component response regulator [Prochlorococcus marinus str. MIT 9202] gi|221537748|gb|EEE40201.1| two-component response regulator [Prochlorococcus marinus str. MIT 9202] Length = 260 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 42/229 (18%), Positives = 85/229 (37%), Gaps = 10/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 +LI+D ++D G ++ + L D+ ++ L G + Sbjct: 5 ILLIEDDRDMRDLVARHLEHSGFDVQKAEDGIKGQALALQYSPDLILLDLMLPSVDGLTL 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R S +P++ I+ L+ + F+SG DD + KP E+ R+ A+ RR Sbjct: 65 CQRLRRDERTSNIPILMITALGGLKDKVTGFNSGADDYITKPFDLEELHVRIKALLRRTN 124 Query: 121 VSNNRAETGPIRVFS-------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + + + + L E +L L+ G+ V+ I Sbjct: 125 RAQLNSSNQQEILNYGPLTLVPERFEAMWFESPIRLTHLEFELLHCLLQRHGQTVSPALI 184 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 ++G ++ + + HI LR KL + + + GY ++ Sbjct: 185 LKEVWG-YEPDDDIETIRVHIRHLRTKLEPDPRKPVYIKTVYGAGYCLE 232 >gi|192359567|ref|YP_001983303.1| DNA-binding response regulator [Cellvibrio japonicus Ueda107] gi|190685732|gb|ACE83410.1| DNA-binding response regulator [Cellvibrio japonicus Ueda107] Length = 220 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 49/219 (22%), Positives = 90/219 (41%), Gaps = 4/219 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + + + E E + + D+ ++ L L Sbjct: 3 ILIVEDEIDLGEILRDYLNAENYTTELVGDGESALARIRNGQWDLIILDLML--PKLDGL 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R +R SQVP+I + L + G DD + KP RE+ R Sbjct: 61 SVCREVRKQSQVPIIMTTAKVEEIDRLLGLEVGADDYICKPFSPREV-VARVKAVLRRSQ 119 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + A+ + + + QG+ L E RILE L A++ K V++ + Y Sbjct: 120 APSGADNSILHLDKEAMQVHHQGQSIELTAIEFRILETLFAHKHKVVSRDLLQKNAY-TD 178 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 V + ++SHI+KLRKKL+ + + S +GY + Sbjct: 179 HRVVSDRTMDSHITKLRKKLQQIHPQEIIHSVYGVGYRL 217 >gi|259502020|ref|ZP_05744922.1| response regulator [Lactobacillus antri DSM 16041] gi|259170021|gb|EEW54516.1| response regulator [Lactobacillus antri DSM 16041] Length = 229 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 41/227 (18%), Positives = 84/227 (37%), Gaps = 9/227 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + ++G + ++ D++ + L+ + Sbjct: 3 ILVVDDDKEIVQLLEIYIRNEGYEPLSAYDGKEALTKLNTN-PDINLVILDLMMPEMDGM 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILA------RVAAI 115 E+ + IR S +P++ +S + + SG DD V KP + E++A R Sbjct: 62 EVIKQIRKDSDIPILVLSAKTADMDKIQGLISGADDYVTKPFNPLEVMARVKSLLRRTQG 121 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + I ++G+V L E IL L ++ + + IF Sbjct: 122 EVTNDQPDVLNVGPLIINKDSHEVKTIKGDVIQLTALEFGILYLLASHPNRVFSADDIFE 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 ++ + V V H+S LR K+ G + + +GY ++ Sbjct: 182 RVW-QQESVVSAKTVMVHVSHLRDKIEEATNGEKVIQTVWGVGYKVE 227 >gi|271969710|ref|YP_003343906.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270512885|gb|ACZ91163.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 224 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 49/221 (22%), Positives = 97/221 (43%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D V+ G G S+ + S E S R ++ ++ L G + Sbjct: 4 ILLVEDDPSVRTGLELALARQGHSVTSYASGEEALDHIRSRRPEIVILDVML--PGIDGV 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120 E+ R IR Q+P+I ++ + ++G DD V KP+ R + AR+ A+ R Sbjct: 62 EVCRRIRKMDQLPVILLTARGDDLDVVVGLEAGADDYVVKPVEPRVLDARIRAVLRRVES 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 V+++R G + V + G L E R+L L+ + G+ + + + A++ Sbjct: 122 VASDRITFGDLVVDRGALKVSLAGREIHLTPTELRLLLELVRHPGQVLNRRYLLRAVWD- 180 Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + +V++ + ++R K+ + D + + R GY Sbjct: 181 HTHVADSRLVDACVQRVRAKIESVPAEPDFIHTVRGFGYRF 221 >gi|229105863|ref|ZP_04236490.1| DNA-binding response regulator [Bacillus cereus Rock3-28] gi|228677584|gb|EEL31834.1| DNA-binding response regulator [Bacillus cereus Rock3-28] Length = 223 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 45/226 (19%), Positives = 90/226 (39%), Gaps = 12/226 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +++ +G + DV ++ L Sbjct: 3 ILVVDDESSIRNLIRMQLEMEGYEVLVAADGREALEKWKEG-PDVLILDVML--PDTDGY 59 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL R+ R +P++ ++ + L G DD V KP ++ E++ RV + RR+K Sbjct: 60 ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMSRRVK 119 Query: 121 VSNNRAETGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 A IR + R V G+ L RE + + ++N + + ++ Sbjct: 120 KEEVTASHEVIRAGELIICPKERKLHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 179 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G F+ V+ + +LRKKL + + + +GY +D Sbjct: 180 KVWG-FEYIGNTRAVDIMVQRLRKKLGTSG--EYIKTIYGVGYKLD 222 >gi|239626588|ref|ZP_04669619.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239516734|gb|EEQ56600.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 237 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 47/223 (21%), Positives = 93/223 (41%), Gaps = 9/223 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +I+D +++ G EGF + E + D++ + L G + Sbjct: 13 IYIIEDDENIRNLLKIALEGFGYGSEGFETAEEGLKRMKEEQPDMAIFDWML--PGMDGI 70 Query: 62 ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IY 116 + +R +P++ ++ + D G DD + KP E+ AR+ + Sbjct: 71 TAIKQVRQTDGLKDIPIMLLTAKEKELDKVIGLDCGADDYMVKPFGVLELSARIRSLLRR 130 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 R + S + I V R+ G L +E +L YL+ N+ + V + ++ + Sbjct: 131 TRREESRDVLSYQGISVNRKTREVISSGHPCELTLKEFELLVYLLENQSRVVTRDELLNR 190 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 I+G ++ E ++ HI LR+KL ++ G + + R +GY Sbjct: 191 IWG-YEYDGETRTLDMHIRTLRQKLGDEGGS-CIKTVRGVGYR 231 >gi|161506505|ref|YP_001573626.1| two component heavy metal response transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|160346743|gb|ABX19826.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia multivorans ATCC 17616] Length = 228 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 41/221 (18%), Positives = 90/221 (40%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + G ++ + + D+ ++ L G+ Sbjct: 4 ILIVEDEPKTGAYLRKGLTEAGYVVDWVEDGITGQHQAETEEYDLLVLDVML--PGQDGW 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120 L + +R P++ ++ + + + G DD + KP E+ AR+ +I R Sbjct: 62 TLLQNLRRSKSTPVLFLTARDDVGDRVKGLELGADDYLAKPFDFVELTARIKSILRRGQP 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 +N + + R QG+ L +E +L LM G+ + + I S ++ + Sbjct: 122 RDSNTLRAADLELDLTRRKATRQGDTILLTAKEFALLWLLMRREGEILPRATIASQVWDM 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + NVV+S I +LR K+ + + + R +GY ++ Sbjct: 182 -NFNSDTNVVDSAIRRLRSKIDDAYEPKLIHTVRGMGYVLE 221 >gi|94310594|ref|YP_583804.1| DNA-binding response regulator CreB [Cupriavidus metallidurans CH34] gi|93354446|gb|ABF08535.1| DNA-binding response regulator in two-component regulatory system with CreC [Cupriavidus metallidurans CH34] Length = 232 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 55/227 (24%), Positives = 97/227 (42%), Gaps = 11/227 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + + D + +G+ +E S R D+ ++ L E Sbjct: 7 LVVEDESAIADTILYALRTEGMQVETCTLGSEALDRVRSRRPDLVILDVGL--PDISGFE 64 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI------- 115 + R +R S VP+I ++ + + G DD V KP RE+ ARV I Sbjct: 65 VCRSMRTFSDVPVIFLTARHEEIDRIVGLEIGADDYVVKPFSPRELAARVRVILRRAKGA 124 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 S E +DG +G L R E R+L L+ + G+ A++Q+ Sbjct: 125 SDSPHPSPMAQEEADFVHDTDGARLAYRGRWLDLTRYEYRLLALLVQHPGRIFARSQLMD 184 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 ++ + V+ V++H+ LR KLR DP+ + R +GYS++ Sbjct: 185 LVWHDSLDTVD-RTVDTHVKTLRAKLREIAPAGDPIRTHRGMGYSLE 230 >gi|331677849|ref|ZP_08378524.1| transcriptional activator protein CopR [Escherichia coli H591] gi|331074309|gb|EGI45629.1| transcriptional activator protein CopR [Escherichia coli H591] Length = 260 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 50/219 (22%), Positives = 97/219 (44%), Gaps = 3/219 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D ++ + G ++ + +L + ++ L G Sbjct: 40 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIML--PGMDGW 97 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + +R Q P+I ++ S+ + DSG +D + KP E+LARV A R+ Sbjct: 98 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 157 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 N+ E +R+ S + L R+E ++L L + G+ + +T I S I+G+ Sbjct: 158 LNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 216 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + N V+ I +LR K+ + + + R +GYS Sbjct: 217 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 255 >gi|326388569|ref|ZP_08210162.1| two component transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] gi|326206820|gb|EGD57644.1| two component transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] Length = 260 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 46/227 (20%), Positives = 91/227 (40%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L+DD A +++ G + S +SA D+ ++ GE L Sbjct: 26 ILLVDDEAALREPLADYLARQGFVVTQAASAAEARGRIASAHYDLVLLDIM--MPGEDGL 83 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R + ++P+I I+ + + G DD V KP RE++AR+ ++ RR Sbjct: 84 SLCRHLAETRRMPVIFITAKGESTDRIVGLEIGGDDYVVKPFDPRELVARIRSVLRRSGR 143 Query: 122 SNNRAETGPIRVFSDGRDPEVQGE-------VFPLPRRERRILEYLMANRGKRVAKTQIF 174 A + F R ++ V P+ E R+L + + + + + ++ Sbjct: 144 VIPEAVEATLYEFESWRLDPLKRRLTDPEGVVVPISSAEFRLLMAFLDHPRQVLDRDRLL 203 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + G + V++ IS+LR+K+ + + + GY + Sbjct: 204 DMVQGREAHLFD-RAVDNQISRLRRKIEIDSRNPQLIQTVWGGGYML 249 >gi|303256488|ref|ZP_07342502.1| DNA-binding response regulator PhoB [Burkholderiales bacterium 1_1_47] gi|330999059|ref|ZP_08322783.1| putative phosphate regulon transcriptional regulatory protein PhoB [Parasutterella excrementihominis YIT 11859] gi|302859979|gb|EFL83056.1| DNA-binding response regulator PhoB [Burkholderiales bacterium 1_1_47] gi|329575646|gb|EGG57177.1| putative phosphate regulon transcriptional regulatory protein PhoB [Parasutterella excrementihominis YIT 11859] Length = 231 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 40/220 (18%), Positives = 94/220 (42%), Gaps = 4/220 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKVL 61 ++++D + + G+ + ++ + +A+ D+ ++ L G L Sbjct: 7 LIVEDEPSILELISYTCRTSGMEVRKAANVAEAKKNLEAAKPDIILLDWMLPDCAGLDWL 66 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119 R ++ +P+I ++ + ++G DD V KP RE+ R + Sbjct: 67 RELRSYHSNESLPVIMLTARGQEDDRVRGLEAGADDYVTKPFSPRELVARIRAVIRRKGG 126 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + GP+ + ++ + V G+ L E + L+ + G+ ++ Q+ ++G Sbjct: 127 DALPDTLRVGPLEIDAERYEARVNGKPLRLSAVEFKFLQVFAKHPGRVYSRAQLIDKVWG 186 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 + ++E V+ H+ +LRK+L D +++ R +GY Sbjct: 187 VG-ADIDERTVDVHMLRLRKQLAGTAAADFIETVRGVGYR 225 >gi|301059412|ref|ZP_07200334.1| response regulator receiver domain protein [delta proteobacterium NaphS2] gi|300446493|gb|EFK10336.1| response regulator receiver domain protein [delta proteobacterium NaphS2] Length = 231 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 46/223 (20%), Positives = 86/223 (38%), Gaps = 8/223 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVL 61 +++DD + + +G ++ + E + S + D+ ++ L G G +V Sbjct: 7 LVVDDEEDILELVRFNLSREGYRVDCVGTGEEAIKIIKSKQPDLMVLDLMLPGIDGFEVA 66 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117 + S +P++ ++ L + G DD V KP R I A + Sbjct: 67 RFLKRDPETSNIPIVMLTAKTEEADVLTGLEMGADDYVTKPFSPRILTARIKAILRRDML 126 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 ++ + + V R+ V + L E IL L+ G +TQ+ + Sbjct: 127 AFPEESSAVKIHNLVVHPGRREVLVDDKPVRLTFTEFGILNALVRRPGWVFTRTQLVDEV 186 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G + V + V+ I LR+KL V++ R +GY I Sbjct: 187 RG-SEHLVTDRSVDVQIVGLRRKLGPAGA--YVETVRGVGYRI 226 >gi|300868153|ref|ZP_07112786.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] gi|300333856|emb|CBN57966.1| putative Histidine kinase [Oscillatoria sp. PCC 6506] Length = 1175 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 41/222 (18%), Positives = 92/222 (41%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D L +A ++E + + L + D+ ++ L + Sbjct: 3 ILVVEDDELTAQALVATLASQNYTVETASDGQEGWELTEAFAYDLILLDVTL--PKLDGI 60 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L + +R+ +P++ ++ + D+G DD V KP E+ AR+ A+ RR + Sbjct: 61 TLCQRLRSQGHQMPILLLTARNTSHDKALGLDAGADDYVVKPFEPEELAARIRALLRRNQ 120 Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +++ + + + L +E +LE + N + + I ++ Sbjct: 121 LTSQSVLEWGDLVFDPISCEVTYKTKPLSLTAKEYALLELFLRNSRRVFSCGAILENLWS 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220 F+E + V +HI LR+KL+ D +++ +GY + Sbjct: 181 -FEEVPSDEAVRTHIKGLRQKLKAAGAPTDMIETVYGIGYRL 221 Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 10/80 (12%), Positives = 33/80 (41%), Gaps = 1/80 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61 +++DD + +L G+ + L + D+ ++ + G ++ Sbjct: 515 MVVDDDPKMLAIVRSLLEPWGLKIIALADPRQFWELLETTSPDLLILDIEMPQISGTELC 574 Query: 62 ELPRIIRAHSQVPLIGISDY 81 ++ R + S +P++ ++ + Sbjct: 575 QIVRNDSSWSSLPILFLTAH 594 Score = 36.6 bits (83), Expect = 2.4, Method: Composition-based stats. Identities = 8/49 (16%), Positives = 16/49 (32%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAI 49 + +++D + IA G LE +L D+ + Sbjct: 388 LLLIVDRDRSLAKKLIAEATTWGFDLEVATNLTIARNKIGLKSPDLVLL 436 >gi|94972032|ref|YP_594072.1| two component transcriptional regulator [Deinococcus geothermalis DSM 11300] gi|94554083|gb|ABF43998.1| two component transcriptional regulator, winged helix family [Deinococcus geothermalis DSM 11300] Length = 244 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 55/223 (24%), Positives = 96/223 (43%), Gaps = 8/223 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + DG + E + L + DV+ ++ L G LE Sbjct: 19 LIVDDDPAILEILRVYLRQDGFRVLEAR--EGAQALSLLPQADVAVLDWML--PGMTGLE 74 Query: 63 LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R A +VPL+ ++ + L + G DD V KP RE++AR+ + RR+ V Sbjct: 75 LARRAHATFPEVPLLMLTARDGEEDKLLGLEGGADDYVTKPFSPREVVARLKVLLRRMGV 134 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + R ++GE L + E +L L G + ++ ++G+ Sbjct: 135 REVIEHGEL-HLDVRARAATLRGEALGLSKLEFDLLFTLAQYPGLAWTRERLLERVWGV- 192 Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDWN 223 D E VV+ HI+ LR+KL + +++ R +GY N Sbjct: 193 DYPRMERVVDVHITGLRRKLGDHAEHPRYIETVRGVGYRFREN 235 >gi|78045027|ref|YP_359462.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans Z-2901] gi|77997142|gb|ABB16041.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans Z-2901] Length = 226 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 40/225 (17%), Positives = 81/225 (36%), Gaps = 7/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++ L + E D+ ++ L + Sbjct: 4 ILVVEDDQKIQKALAHLLKAENYDFVQAYDGEAAVEHFYRENFDLVILDLNL--PKQDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH---REILARVAAIYRR 118 + + I+ VP+I ++ + F GVDD + KP + V YR+ Sbjct: 62 SVLKEIKNREDVPVIILTARGEEMDKITGFTLGVDDYLTKPFSPAELMLRIKAVLRRYRK 121 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + G + V R+ GE L +E +LE L N + K QI ++ Sbjct: 122 GRGEEEILKYGKVAVNLKTREVLKNGEPVELTSKEYALLELLFKNPNRIFTKEQIMDRLW 181 Query: 179 GLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDW 222 + N+V + +LR+K+ + + + +GY + Sbjct: 182 -PDTFPEDPNIVSVLVRRLREKIEEDPSSPRIIKTVWGVGYKAEK 225 >gi|331701703|ref|YP_004398662.1| winged helix family two component transcriptional regulator [Lactobacillus buchneri NRRL B-30929] gi|329129046|gb|AEB73599.1| two component transcriptional regulator, winged helix family [Lactobacillus buchneri NRRL B-30929] Length = 241 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 40/232 (17%), Positives = 95/232 (40%), Gaps = 17/232 (7%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + ++ + + + + D+ ++ L + Sbjct: 5 LVVDDEPAIVTLLEYNLKQANFEVQSATNGVDALSMAENGQFDIVLLDLML--PQMSGEQ 62 Query: 63 LPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + + + P+I ++ + + + G DD + KP RE++AR+ A+ RR + Sbjct: 63 VLKQLRMDRNDTPVILLTAKDTEFDKVFGLEMGADDYIPKPFSPREVIARINAVLRRYEK 122 Query: 122 S------------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 S N TGP + + L +E ++EYL+++ + ++ Sbjct: 123 SAAASETPATKSAENVETTGPFTIDHKKYRVSADSKNLKLTPKEFELMEYLVSHENQVLS 182 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + Q+ ++G FD + + +V+ I+ LR+K+ + + + R GY Sbjct: 183 RDQLLQGVWG-FDYSGQSRMVDIQIAHLREKIEPDPKRPKYLRTVRGFGYEF 233 >gi|320527273|ref|ZP_08028458.1| response regulator receiver domain protein [Solobacterium moorei F0204] gi|320132297|gb|EFW24842.1| response regulator receiver domain protein [Solobacterium moorei F0204] Length = 221 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 43/221 (19%), Positives = 95/221 (42%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + +G S + + + E L + + + ++ L Sbjct: 4 ILLVEDDFAIVHSLQEYLNLEGFSSDYASGQKEAEQLLKTKQYQLLLLDVSLK--DGDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + Q+P+I +S +T + + G DD + KP +E+L+R+ + RR Sbjct: 62 AVC-NMAQKIQLPVIFLSASSDEETVVRGLNIGADDYITKPFRPKELLSRIKNVLRRHTG 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 I+V + + + + L E ++L + +RGK + + Q+ I+ + Sbjct: 121 HQTIILLDEIQVDIEKAIVKKKEKEINLSALEYKLLTLFIDHRGKLLTRDQLLDEIWNIA 180 Query: 182 DEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 + V +N + +I +LR+K+ + + + R LGY +D Sbjct: 181 GDFVNDNTITVYIKRLREKIEDDPTNPKIIKTVRGLGYRMD 221 >gi|308068988|ref|YP_003870593.1| sensory transduction protein [Paenibacillus polymyxa E681] gi|305858267|gb|ADM70055.1| Hypothetical sensory transduction protein [Paenibacillus polymyxa E681] Length = 222 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 50/221 (22%), Positives = 88/221 (39%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D + + + S D+ ++ L G + Sbjct: 4 ILLIEDEKNLARFIELELKHESYEVTVEYEGRKGLESALSEEWDIILLDLML--PGINGI 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119 E+ R IR Q P+I ++ + + DSG DD + KP E+ R Sbjct: 62 EVCRRIRKTKQTPIIMLTARDGVMDKVMGLDSGADDYIPKPFAIEELLARMRSLLRRSGF 121 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + + + S+ R ++ L +RE +L LM N G+ + + ++ I+G Sbjct: 122 VEDSKQITYNGLVLDSEARILTKDQQIIELTKREFDLLSILMHNIGRVMTRERLLELIWG 181 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D VE NVV+ +I LR K+ + + R LGY I Sbjct: 182 -YDSEVETNVVDVYIRYLRSKIDEPGEASFIQTLRGLGYVI 221 >gi|294627904|ref|ZP_06706483.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294666844|ref|ZP_06732076.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292597818|gb|EFF41976.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292603361|gb|EFF46780.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 229 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 44/222 (19%), Positives = 82/222 (36%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +++DD ++D + + D+ ++ L G G + Sbjct: 5 ILIVDDEPAIRDMVAFALRKGEFEPIHAGDARAAQTAIADRVPDLILLDWMLPGTSGLDL 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118 R + ++P+I ++ + ++GVDD V KP RE+ R R Sbjct: 65 ARRWRKEQLTREIPIIMLTARGEENDRVGGLEAGVDDYVVKPFSARELLARIRAVMRRTR 124 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + G +R+ P+ E R+L + M + + +TQ+ ++ Sbjct: 125 EDDEDGSVAVGKLRIDGAAHRVFAGDAPVPIGPTEYRLLHFFMTHPERVYTRTQLLDHVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G VEE ++ HI +LRK L + V + R GY Sbjct: 185 GGSVY-VEERTIDVHIRRLRKTLEPFGLENMVQTVRGSGYRF 225 >gi|291522141|emb|CBK80434.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Coprococcus catus GD/7] Length = 232 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 44/228 (19%), Positives = 87/228 (38%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + G + + L + D+ ++ + Sbjct: 7 ILVVDDDKEIANLVEIYLSSTGYKIHKAYNAVDGLALLQ--KYDIKLAIIDVMMPQIDGI 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 E+ R IR +P+I +S + + G DD + KP + E+LARV + RR Sbjct: 65 EMCRRIRTCRNIPIIILSAKSADVDKILGLSVGADDYMIKPFNPMELLARVKSQLRRYLE 124 Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 +N E + + + V G L E IL+ L ++ G+ + +I+ Sbjct: 125 LNPGVVPDSNMIEVQDVVIDTKKHRVTVDGRDVVLTPIEFNILQLLASHPGRVFSTDEIY 184 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 ++ N V H+ +LR+K+ + + +GY I+ Sbjct: 185 ENVWNEKLYEAN-NTVMVHMRRLREKVEKNPRSPQLIKTVWGVGYKIE 231 >gi|290959872|ref|YP_003491054.1| two-component system reponse regulator [Streptomyces scabiei 87.22] gi|260649398|emb|CBG72513.1| putative two-component system reponse regulator [Streptomyces scabiei 87.22] Length = 241 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 45/224 (20%), Positives = 86/224 (38%), Gaps = 6/224 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L +D A + + +G +E D+ ++ L G LE Sbjct: 21 LLAEDDASISEPLARALRREGYEVEVREDGPTALDAGMQGGIDLVVLDLGL--PGMDGLE 78 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-HREILARVAAIYRRLK 120 + R +RA P++ ++ T+ D+G DD V KP + A + R Sbjct: 79 VARRLRAEGHTVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAA 138 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 T +R+ + + E L +E +L L+ + G+ V + Q+ ++ Sbjct: 139 EPAQPPATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 198 Query: 181 FDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDWN 223 + ++ HIS LRKKL + + + R +G+ + N Sbjct: 199 TWWS-STKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEKN 241 >gi|302553204|ref|ZP_07305546.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces viridochromogenes DSM 40736] gi|302470822|gb|EFL33915.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces viridochromogenes DSM 40736] Length = 233 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 45/231 (19%), Positives = 93/231 (40%), Gaps = 20/231 (8%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 + ++D ++++ DG + + R D++ ++ + G + Sbjct: 8 LFVEDDDVIREATQLALERDGFVVTAMPDGLSGLEAFRADRPDIALLDVMV--PGLDGVS 65 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R IR S VP+I +S + ++G DD V KP ++AR+ A+ RR + Sbjct: 66 LCRRIRDESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRRFGHA 125 Query: 123 NNRAETGPIRV-------------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 P ++G + G L E R+L + G ++ Sbjct: 126 GGGRAEEPASPADGGVLTFGDLEVDTEGMEVRRAGRPVALTPTEMRLLLEFSSAPGTVLS 185 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + ++ ++ + + VV+ H+ +LR+K+ G D +++ R GY + Sbjct: 186 RDKLLERVWD-YGWGGDTRVVDVHVQRLRQKI----GQDRIETVRGFGYKL 231 >gi|323705669|ref|ZP_08117242.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium xylanolyticum LX-11] gi|323534887|gb|EGB24665.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium xylanolyticum LX-11] Length = 225 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 50/224 (22%), Positives = 94/224 (41%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD ++ G +G ++ E + D+ ++ L L Sbjct: 4 ILIIDDEEMLVKGLKLSLIQEGYYVDCAYDGEEGLEKIKNGNYDLVILDLML--PKIDGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L + +R+ S +P+I ++ + + G DD + KP + RE++AR+ A++RR Sbjct: 62 TLCKEVRSFSNIPIIMLTAKGEDVDKIVGIEMGADDYLAKPFNTRELIARIRALFRRTTT 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF----PLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + P+ + L +E +L L +N GK +K ++ I Sbjct: 122 PYVKKHDVIKLGDITINVPDKIVQKNGKDIDLTNKEFELLVLLASNPGKLYSKDKLMDLI 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 +G FD + N V HI KLR+K+ + + +K GY + Sbjct: 182 WG-FDFYGDTNTVNVHIRKLREKIEDDPANPKHIFTKWGSGYYM 224 >gi|322807733|emb|CBZ05308.1| putative response regulator ArlR [Clostridium botulinum H04402 065] Length = 227 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 42/221 (19%), Positives = 88/221 (39%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++ + +G ++ + + ++ + G + Sbjct: 6 ILLVEYEEQMSMFIEMELTHEGYKVDIVYDGREALEKVENTEYQLILLDIMI--PGLNGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119 E+ R IR S VP+I ++ + + D G +D + KP E+ RV + + Sbjct: 64 EVCRRIRQFSCVPIIMLTTKSGVSDKVLGLDVGANDYLTKPFAIEELLARIRVYGREKLV 123 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 K + + I + + G L ++E +LE L+ N+ + + ++ ++G Sbjct: 124 KSKFDEVKVKEIVMDNKTHQVWRSGREIELTKKEYDLLEKLLINKNIVLTRERLIEKVWG 183 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D + NVV+ I LR K+ N + + R +GY I Sbjct: 184 -YDYVGDTNVVDVFIRYLRSKIDNDSKEKLITTIRGVGYVI 223 >gi|168703031|ref|ZP_02735308.1| two component heavy metal response transcriptional regulator, winged helix family protein [Gemmata obscuriglobus UQM 2246] Length = 224 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 40/222 (18%), Positives = 91/222 (40%), Gaps = 5/222 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++I+D + + G +++ + + L ++ ++ ++ L G Sbjct: 4 LIIEDDTRTAEYLRKGLREAGFTVDIASRGDDGLHLAATGGYELVVLDIML--PGRDGWS 61 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + +RA + P++ ++ ++ + + G DD + KP E LARV ++ RR Sbjct: 62 VLAALRAAGRQTPVLFLTAADAVTDRVRGLELGADDYLIKPFAFSEFLARVRSVLRRGTD 121 Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 V + G L +E ++ + G +++T I ++ + Sbjct: 122 RRTDVLRVADLEVDTVRLAASRAGRKLDLTPKEFGLIALMARRAGDVLSRTVIAEQVWDM 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + E NVV+ H+ +LR KL + + + R +GY ++ Sbjct: 182 -NFDSESNVVDVHVRRLRAKLDDPYPTKLIHTVRGVGYVLEE 222 >gi|89092214|ref|ZP_01165168.1| phosphate regulon transcriptional regulatory protein PhoB [Oceanospirillum sp. MED92] gi|89083302|gb|EAR62520.1| phosphate regulon transcriptional regulatory protein PhoB [Oceanospirillum sp. MED92] Length = 231 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 46/224 (20%), Positives = 92/224 (41%), Gaps = 5/224 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVL 61 +++DD A +++ G + L + D+ ++ + G G + Sbjct: 8 LIVDDEAPIREMIAVALEMAGYQCLEAENANQAHGLIVDDKPDMVLLDWMMPGASGIEFA 67 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 R + +P+I ++ + ++GVDD + KP RE++AR+ A+ RR Sbjct: 68 RRLRKDETTADIPIIMLTAKGDEDNKIKGLEAGVDDYITKPFSPRELVARLKAVLRRTTP 127 Query: 122 SNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + L E R+L++ M ++ + +++Q+ ++G Sbjct: 128 KGIEEPVTVDGLTLDPISHRVTSDLNPIELGPTEFRLLQFFMTHQDRAYSRSQLLDMVWG 187 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 + VEE V+ HI +LRK L ++ + V + R GY N Sbjct: 188 -GNVYVEERTVDVHIRRLRKALGDRHDY-LVQTVRGTGYRFSSN 229 >gi|46190306|ref|ZP_00206421.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bifidobacterium longum DJO10A] Length = 248 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 50/235 (21%), Positives = 95/235 (40%), Gaps = 19/235 (8%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++DD + + + ++G + + D+ ++ L G Sbjct: 12 IFIVDDDQAIGEMLSLVLENEGFQTVTCLDGLRAVEMFPIVKPDLILLDVML--PGLDGT 69 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IRA S VP+I ++ + ++G DD V KP E+LAR+ A +R K Sbjct: 70 EVARRIRATSNVPIIMLTAKSDTLDVVAGLEAGADDYVPKPFKVAELLARIRARFRIAKP 129 Query: 122 ---------------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166 + N E GPI + G+ L E +L L A G+ Sbjct: 130 AAEDGATGGASGGNANVNHLERGPIVIDRLEHTATKDGKDLNLTPMEFELLFMLAAAAGE 189 Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 ++++ + ++G ++ + + +V H+ +LR K+ + V + R +GY Sbjct: 190 AISRSSLLKNVWG-YENSGDTRLVNVHVQRLRAKVEDDPENPQIVQTVRGIGYKF 243 >gi|294010703|ref|YP_003544163.1| two-component system response regulator CusR [Sphingobium japonicum UT26S] gi|292674033|dbj|BAI95551.1| two-component system response regulator CusR [Sphingobium japonicum UT26S] Length = 228 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 46/223 (20%), Positives = 94/223 (42%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D A G+ G +++ ++ +L S ++ + G + Sbjct: 5 ILVVEDDAATAAYVAKGMGEAGFTVDRADNGRDGLFLASDGSYGAIILDRMMPAMDGMAM 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L+ R A + P+I +S + + ++ SG DD + KP E++ARV + RR Sbjct: 65 LKALRA--AEIETPVIILSALGTPEDRVEGLTSGADDYLAKPFAFAELMARVQLLLRRGG 122 Query: 121 VSNNRAETGPI---RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + R + L RE R+LEY + + + V +T + + Sbjct: 123 GGGGVVTHLRHADLEMDLLSRRVKRGSRSVDLQPREFRLLEYFLRHPDQVVTRTMLLEGV 182 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + NV++ H+S+LR+KL + + + R +GY + Sbjct: 183 WD-YHFDPGTNVIDVHVSRLRRKLDDGGDRPLLHTVRGMGYRL 224 >gi|297197902|ref|ZP_06915299.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] gi|197717155|gb|EDY61189.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] Length = 231 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 53/227 (23%), Positives = 94/227 (41%), Gaps = 12/227 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +LI+D V++G ++ + E + R D+ ++ L G LE Sbjct: 5 LLIEDDPAVREGVALALRRQNHDVDATATGEEGMDRLRAFRPDIVVLDLML--PGMTGLE 62 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118 + R IRA Q P+I + + ++G DD V KP+ R + AR+ A+ RR Sbjct: 63 VCRGIRAVDQTLPIIMATARGEEVDIVVGLEAGADDYVVKPVLARVLDARIRAVLRRAAG 122 Query: 119 ----LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + G + V G + GE L E R+L L A+ G+ ++ Q+ Sbjct: 123 GTPGAEGLPKIDTYGDLAVDRAGLTVALNGEPIALAPSELRLLLTLSASPGQVFSRQQLL 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 A++ D + +V++ + +LR K+ + + R GY Sbjct: 183 EAVW-EHDYHGDARLVDACVKRLRTKMSEPPRAPRYIHTVRGFGYRF 228 >gi|221067477|ref|ZP_03543582.1| two component transcriptional regulator, winged helix family [Comamonas testosteroni KF-1] gi|264678108|ref|YP_003278015.1| two component transcriptional regulator, winged [Comamonas testosteroni CNB-2] gi|299533688|ref|ZP_07047062.1| osmolarity response regulator [Comamonas testosteroni S44] gi|220712500|gb|EED67868.1| two component transcriptional regulator, winged helix family [Comamonas testosteroni KF-1] gi|262208621|gb|ACY32719.1| two component transcriptional regulator, winged [Comamonas testosteroni CNB-2] gi|298718410|gb|EFI59393.1| osmolarity response regulator [Comamonas testosteroni S44] Length = 243 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 45/230 (19%), Positives = 93/230 (40%), Gaps = 14/230 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++D +G + + + D+ ++ GE L Sbjct: 11 ILVVDDDARIRDLLRRYLTQEGFEIMIAEDGKALNRILLRETVDLIVLDLM--MPGEDGL 68 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R +R A+ + P+I ++ + + G DD + KP + RE+LAR+ A+ RR Sbjct: 69 SICRRLRSANDRTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARIHAVLRRRP 128 Query: 121 VS---------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 N GP R + GE PL E +L+ L+ + + +++ Sbjct: 129 PQEAPGAPSGDNEVVTFGPFTFDLGTRVLQKNGEELPLTTGEFAMLKALVRHPRQPLSRE 188 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220 ++ G + + ++ +S+LRK + + + + +GY Sbjct: 189 KLALLARGR-EFEPFDRSLDVQVSRLRKLIEEDAAAPRYIQTVWGVGYVF 237 >gi|229070657|ref|ZP_04203894.1| Two-component response regulator [Bacillus cereus F65185] gi|228712479|gb|EEL64417.1| Two-component response regulator [Bacillus cereus F65185] Length = 228 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 48/226 (21%), Positives = 90/226 (39%), Gaps = 11/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++++ ++G ++ + + + ++ L Sbjct: 5 ILIVEDEDILREIMKDYLLNEGYNVLEAIDGKEALSIFEEHEVHLIILDIML--PELDGW 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR------EILARVAAI 115 + R IR S VP+I ++ TL F+ G DD V KP + L Sbjct: 63 TVCRRIRKKSNVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLMESRYS 122 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + + I V R + GE L E I+ YLM N+G +++ Q+ + Sbjct: 123 SAVNVPAEDTLTSSGIHVHFPSRTVTIDGEDINLTHTEFEIVTYLMRNQGIVISREQLIN 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 I+G ++ A ++ V SHI LR KL K + + GY + Sbjct: 183 KIWG-YEFAGDDRTVNSHIRNLRHKLGQKAA--CIVTVVRAGYKFE 225 >gi|126736726|ref|ZP_01752465.1| two component transcriptional regulator, winged helix family protein [Roseobacter sp. CCS2] gi|126713841|gb|EBA10713.1| two component transcriptional regulator, winged helix family protein [Roseobacter sp. CCS2] Length = 249 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 46/223 (20%), Positives = 92/223 (41%), Gaps = 8/223 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L++D + + + G +G + + E + ++ L G LE Sbjct: 16 LLVEDDTRLAEMVASYLGANGFGVTTAKTGEDGLGVLDDTPFKAVILDINL--PGIDGLE 73 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R ++A S+ P+I ++ + + G DD + KP RE+LAR+ AI RR + Sbjct: 74 VCRRMKARSETPIIMLTAKGDPMDRIIGLEIGADDYLPKPFEPRELLARLRAIMRRGQTP 133 Query: 123 NNRAETGPIR----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 T + +V G L + ++L L G+ +++ + A+ Sbjct: 134 TQTVTTPLQFGRLQIDPGSMLAKVDGRSCDLTSHQFQLLLVLARAPGRVLSRELLMDALR 193 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 G EA + ++ HIS++R ++ + + + R GY Sbjct: 194 GETLEAFD-RSIDVHISRIRAEIEDDPKNPRRIITVRGAGYVF 235 >gi|86160425|ref|YP_467210.1| two component transcriptional regulator [Anaeromyxobacter dehalogenans 2CP-C] gi|85776936|gb|ABC83773.1| two component transcriptional regulator, winged helix family [Anaeromyxobacter dehalogenans 2CP-C] Length = 230 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 50/224 (22%), Positives = 88/224 (39%), Gaps = 11/224 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L+DD + G + E D+ ++ L E Sbjct: 5 LLVDDERDLLSLLDFNLRASGFETLLATTGEQALSHLRRRVPDLVLLDVML--PDVSGTE 62 Query: 63 LPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIY 116 + R I++ VP++ ++ + F+ G DD V KP RE++ R+ Sbjct: 63 VCRQIKSDPRTRHVPVVMLTAKGDEVDRVVGFELGADDYVTKPFSVRELVLRLKAVLRRS 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 GPIRV D V G L E ++L LM+ G+ ++ Q+ Sbjct: 123 AARPSDRPPESVGPIRVDVDAHRAYVDGAEVVLTPLEFKLLTTLMSRLGRVQSREQLLED 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ VE V++H+ +LR+KL G D +++ R +GY + Sbjct: 183 VW-EMSSEVETRTVDTHVKRLREKLG--SGRDLLETVRGIGYRL 223 >gi|308067409|ref|YP_003869014.1| transcriptional regulatory protein resD [Paenibacillus polymyxa E681] gi|305856688|gb|ADM68476.1| Transcriptional regulatory protein resD [Paenibacillus polymyxa E681] Length = 226 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 45/224 (20%), Positives = 92/224 (41%), Gaps = 9/224 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L++D +++ F + + + + S + D+ ++ E Sbjct: 6 LLVEDEIRIREVIADYFKQNNWEVYEAGNGKDALIWLDSVQPDLIILDIM--MPELDGWE 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +R+ S VP+I ++ + F+ G DD V KP + ++AR A+ +R++ Sbjct: 64 VCRQVRSRSGVPIILLTAKSGDDDKILGFELGADDYVTKPFSPKVLIARANALMKRVEGH 123 Query: 123 NNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + EV L +E +L L+ N+G +++ I + ++ Sbjct: 124 VQPESHILRFGSAILNTMAHRLEVDQAEVELTPKEYELLRLLIHNKGIVISRDTILNRVW 183 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 G+ D + VV++HI KLR KL + + GY + Sbjct: 184 GI-DFEGDTRVVDTHIKKLRSKLGR--ESRHIRTVFGTGYRFEE 224 >gi|262038592|ref|ZP_06011961.1| response regulator MprA [Leptotrichia goodfellowii F0264] gi|261747461|gb|EEY34931.1| response regulator MprA [Leptotrichia goodfellowii F0264] Length = 224 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 40/222 (18%), Positives = 92/222 (41%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + +G + + + D+ ++ L + Sbjct: 5 ILVIEDDPKISRLLEIELKFEGFDVFFAYDGKEGLNMAKYGSYDLILLDVML--PKMSGM 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118 E+ + IR SQVP+I ++ + + FD G DD + KP + E + + ++ Sbjct: 63 EVCKRIREGSQVPIIMLTAKDEISDKIVGFDYGADDYMTKPFSNEELLARIKALLRRTKK 122 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 E +++ + + L +RE +L++L+ N+G +++ +I ++ Sbjct: 123 TVDHKGIFEFEDLKINYSTYEVFRGETLISLSKREFELLDFLVLNKGIVLSRDKILEEVW 182 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G FD +N+++ +I LR K+ + + R +G+ Sbjct: 183 G-FDYIGNDNILDLYIKYLRDKVDKPYERKFIQTVRGIGFIF 223 >gi|260600073|ref|YP_003212811.1| DNA-binding transcriptional activator CusR [Cronobacter turicensis z3032] gi|260219420|emb|CBA34772.1| Probable transcriptional regulatory protein silR [Cronobacter turicensis z3032] Length = 234 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 37/224 (16%), Positives = 99/224 (44%), Gaps = 6/224 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G ++ ++ L +A D+ ++ L Sbjct: 11 ILIVEDEIKTGEYLSKGLTEAGFVVDHADNGLTGYHLAMTAEYDLVILDIML--PDVNGW 68 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118 ++ R++R A +P++ ++ +++ + + G DD + KP E+LARV Sbjct: 69 DIIRMLRTAGKGMPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGN 128 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++ ++ + + + R G L +E +LE+ + ++G+ + ++ I S ++ Sbjct: 129 TMITESQFKVADLSIDLVSRKVSRAGNRIVLTSKEFSLLEFFIRHQGEVLPRSLIASQVW 188 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + + + N ++ + +LR K+ N + + R +GY ++ Sbjct: 189 DM-NFDSDTNAIDVAVKRLRAKIDNDYETKLIQTVRGVGYMLEV 231 >gi|218235082|ref|YP_002367585.1| DNA-binding response regulator [Bacillus cereus B4264] gi|229046562|ref|ZP_04192213.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH676] gi|296503400|ref|YP_003665100.1| two-component response regulator [Bacillus thuringiensis BMB171] gi|218163039|gb|ACK63031.1| DNA-binding response regulator [Bacillus cereus B4264] gi|228724737|gb|EEL76043.1| Two component transcriptional regulator, winged helix [Bacillus cereus AH676] gi|296324452|gb|ADH07380.1| two-component response regulator [Bacillus thuringiensis BMB171] Length = 215 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 38/220 (17%), Positives = 94/220 (42%), Gaps = 11/220 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++ DD + A F +G + E + + D++ ++ + Sbjct: 4 LIADDEQDMLRILKAYFEKEGFEVFLAKDGEEALQIFYDEKIDLAILDWM--MPKHSGIT 61 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + I+ +S V ++ ++ + L SG D+ V KP H ++ R ++L Sbjct: 62 VCQEIKKNSSVKVLMLTAKSESEDELAALQSGADEYVKKPFHPGVLITRA----KKLIQH 117 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 ++ + +++ + + E +++ + ++G + + ++ ++G FD Sbjct: 118 DDIIQVQDVKINFAKNKVYKNDIELEITKTELELIKCFLNHKGTILTRKKLLDIVWG-FD 176 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 EE V++H+ +LRKK+ + + + R LGYS++ Sbjct: 177 YFGEERTVDTHVRRLRKKIGE----NIIKTHRGLGYSLEE 212 >gi|42519762|ref|NP_965692.1| two-component system response regulator [Lactobacillus johnsonii NCC 533] gi|116630289|ref|YP_815511.1| DNA-binding response regulator [Lactobacillus gasseri ATCC 33323] gi|227889299|ref|ZP_04007104.1| response regulator [Lactobacillus johnsonii ATCC 33200] gi|238853710|ref|ZP_04644077.1| regulatory protein VanR [Lactobacillus gasseri 202-4] gi|268320126|ref|YP_003293782.1| two-component system response regulator [Lactobacillus johnsonii FI9785] gi|300362908|ref|ZP_07059078.1| response regulator [Lactobacillus gasseri JV-V03] gi|41584052|gb|AAS09658.1| two-component system response regulator [Lactobacillus johnsonii NCC 533] gi|116095871|gb|ABJ61023.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus gasseri ATCC 33323] gi|227850101|gb|EEJ60187.1| response regulator [Lactobacillus johnsonii ATCC 33200] gi|238833646|gb|EEQ25916.1| regulatory protein VanR [Lactobacillus gasseri 202-4] gi|262398501|emb|CAX67515.1| two-component system response regulator [Lactobacillus johnsonii FI9785] gi|300352958|gb|EFJ68836.1| response regulator [Lactobacillus gasseri JV-V03] gi|329668013|gb|AEB93961.1| two-component system response regulator [Lactobacillus johnsonii DPC 6026] Length = 228 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 42/227 (18%), Positives = 96/227 (42%), Gaps = 9/227 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + ++G S + S+ +++ + ++ + Sbjct: 3 ILVVDDDKEIVELLSIYLKNEGYEPIAAYSGKEALTKLSTN-PEIALMILDIMMPQMSGI 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + +R S++P++ +S S + +G DD V KP + E++ARV ++ RR + Sbjct: 62 EVIKEVRKDSEIPILVVSAKTSDMDKIQGLITGADDYVVKPFNPLEVMARVRSLLRRSQK 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQG------EVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + V + + +V L E IL L ++ + + +IF Sbjct: 122 EVKDDKPDVLEVGPLVINKDSHEVKTLTGKVIQLTALEFGILYMLASHPNRVFSADEIFE 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 ++ + V V H+S LR K++ G + + + +GY ++ Sbjct: 182 RVW-QQESVVSAKTVMVHVSHLRDKIQKATDGEEVIQTVWGVGYKVE 227 >gi|291482632|dbj|BAI83707.1| hypothetical protein BSNT_00453 [Bacillus subtilis subsp. natto BEST195] Length = 230 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 41/227 (18%), Positives = 81/227 (35%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + + +G + E L D+ ++ L + Sbjct: 4 ILLVEDDHSISEMVDHYLTKEGFGIVHAFDGEEGIRLFQQGSYDLVLLDIML--PKLNGM 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI-------LARVAA 114 + +IIR S VP++ IS G DD + KP E+ + R Sbjct: 62 DFLKIIREKSNVPVLMISAKDGDVDKALGLGFGADDYIAKPFSMIELTARVKAAIRRATQ 121 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N + + D GE L E ++L +N K K QI+ Sbjct: 122 YSAEEPAVNKVIRIHQLAIDIDNVSVLKNGEPLQLTSTEWQLLCLFASNSKKVFTKEQIY 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 +++ ++N++ H+ +LR+K+ + + + +GY + Sbjct: 182 RSVWNEEYFD-DQNIINVHMRRLREKIEDDPSSPQYIKTLWGIGYKL 227 >gi|255525555|ref|ZP_05392490.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|255510739|gb|EET87044.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] Length = 228 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 48/219 (21%), Positives = 94/219 (42%), Gaps = 4/219 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + G +G+ + +LE + ++ D+ ++ L Sbjct: 4 ILLVEDDESLNRGISFKLNKEGMKVFAAKNLEEGREIFNNTSLDLIILDIGL--PDGNGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E IR S V +I ++ + D G DD + KP +++++ A+ RR Sbjct: 62 EFCSEIRKQSGVLIIFLTACDEEVDIVTGLDMGADDYITKPFSFMVLMSKINALLRRNSS 121 Query: 122 SNNRAETGPIRVFSDGRDPE-VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 SN+ F + L + E R+L+YLM N G+ + K Q+ + ++ L Sbjct: 122 SNSSKIVSGSIAFYPEEMKVLKDEKQIDLSKTELRLLKYLMLNSGQIIKKEQLLNELWDL 181 Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218 + V+ N + +I +LR+K+ N + + R +GY Sbjct: 182 DGDFVDSNTIAVNIRRLREKIEVNPSKPKYIKTVRGIGY 220 >gi|169828289|ref|YP_001698447.1| response regulator ArlR [Lysinibacillus sphaericus C3-41] gi|168992777|gb|ACA40317.1| response regulator ArlR [Lysinibacillus sphaericus C3-41] Length = 247 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 48/223 (21%), Positives = 94/223 (42%), Gaps = 8/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + +G + L ++ DV ++ L G + Sbjct: 27 ILLVEDEKHIARFVELELQHEGYDVTVAFEGREGLSLATTDAFDVLLLDVML--PGINGI 84 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117 E+ R IR SQVP+I I+ ++ + D+G DD + KP I + Sbjct: 85 EICRRIRTQSQVPIILITARDAVMDRVAGLDAGADDYIVKPFAIEELLARIRTILRRATT 144 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + ++ I + + VQG L + E +L+ L+ ++ + + I +++ Sbjct: 145 QEPANSECLSLRDIEIDIAAYEVFVQGNKLDLTKTEYDLLKLLIEHKNRVCTREHILTSV 204 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G +D +E NVV+ +I LR KL +++ R +GY + Sbjct: 205 WG-YDTDIETNVVDVYIRHLRSKLPGDTNA-YIETVRGVGYVM 245 >gi|160880958|ref|YP_001559926.1| two component transcriptional regulator [Clostridium phytofermentans ISDg] gi|160429624|gb|ABX43187.1| two component transcriptional regulator, winged helix family [Clostridium phytofermentans ISDg] Length = 230 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 91/224 (40%), Gaps = 7/224 (3%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEK 59 + +++D +++ + G +E F + E ++ ++ L G Sbjct: 8 LIYIVEDDRNIREIEGYALRNSGFEVEVFETGEELYRALEKEIPELILLDVMLPNEDGLS 67 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIY 116 +L R +P++ ++ + + D G DD + KP E+++RV Sbjct: 68 ILSNVRKDSKTENIPIMMVTAKTTEMDKVKGLDLGADDYITKPFGIMELVSRVKALLRRA 127 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + + + V GE L +E +L YL+ N+G +++ +I Sbjct: 128 GGNGQNVGALSFHDVSLHVEKHSVTVDGESCELTYKEFELLRYLLENQGIVLSRDRIMER 187 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G FD E V+ HI LR KL G D + + R +GY I Sbjct: 188 VWG-FDYEGESRTVDMHIKTLRHKLGA--GGDIIKTVRNVGYKI 228 >gi|89902408|ref|YP_524879.1| two component transcriptional regulator [Rhodoferax ferrireducens T118] gi|89347145|gb|ABD71348.1| two component transcriptional regulator, winged helix family [Rhodoferax ferrireducens T118] Length = 243 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 45/229 (19%), Positives = 87/229 (37%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ + + D+ ++ L L Sbjct: 7 ILIVDDEPEIRRLLVDYLMRNNFEAVAARDGREMWQALDRHAIDLVVLDLML--PDTDGL 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R +RA S +P++ ++ + + G DD + KP RE+LAR+ A+ RR + Sbjct: 65 SLCRELRAKSNLPVLMLTALGEETDRIVGIEMGADDYLVKPFSPRELLARIKAVLRRTRA 124 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEV---------FPLPRRERRILEYLMANRGKRVAKTQ 172 R E PL E R+L L+ + + + + Q Sbjct: 125 LPPNMRPESARCLCFAGWCLDTAERLLTAPDGVATPLSGGEYRLLHILLDHPNRVLNRDQ 184 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 + I+G EA + ++ +S+LR++LR+ + + R GY + Sbjct: 185 LTEMIHGREAEAYD-RAIDVQVSRLRQRLRDDSREPTLIKTVRGEGYVL 232 >gi|329116649|ref|ZP_08245366.1| response regulator ArlR [Streptococcus parauberis NCFD 2020] gi|326907054|gb|EGE53968.1| response regulator ArlR [Streptococcus parauberis NCFD 2020] Length = 228 Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 42/224 (18%), Positives = 84/224 (37%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G + + D+ ++ L Sbjct: 5 ILIVEDEKNLARFVSLELQHEGYEVSVEVNGREGLETALEKDFDLILLDLML--PEMDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAIY 116 E+ R ++ ++ ++ S+ + D G DD + KP R Sbjct: 63 EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 K + N+ + + R E L +RE +L LM N + + + ++ S+ Sbjct: 123 ETEKKAPNQGVYRDLVLNPQNRSVNRGDEEISLTKREYDLLNILMTNMNRVMTREELLSS 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +DEAVE NVV+ +I LR K+ + + R +GY I Sbjct: 183 VW-KYDEAVETNVVDVYIRYLRGKIDMPGRESYIQTVRGMGYVI 225 >gi|228984473|ref|ZP_04144650.1| Two-component response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228775176|gb|EEM23565.1| Two-component response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 209 Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 37/214 (17%), Positives = 76/214 (35%), Gaps = 7/214 (3%) Query: 11 VKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH 70 ++ + G + + + D ++ + + IR Sbjct: 1 MRQLVGMYLDNFGYEWGEAENGKEALKKLETNHYDFVVLDIM--MPEMDGHSVCKEIRKT 58 Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRLKVSNNRAET 128 S VP+I ++ ++ G DD + KP E+ + + Sbjct: 59 SDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTKQEQQEEIQF 118 Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188 GPI + R E GE L +E +L +L + G+ ++ Q+ ++G +D A Sbjct: 119 GPILINEKSRKIEADGEPISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG-YDYAGSTR 177 Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 V++H+ +R KL + + +GY + Sbjct: 178 TVDTHVKTMRLKLGESGN--YIQTVWGVGYKFEV 209 >gi|16126998|ref|NP_421562.1| DNA-binding response regulator [Caulobacter crescentus CB15] gi|221235790|ref|YP_002518227.1| two-component response regulator [Caulobacter crescentus NA1000] gi|13424362|gb|AAK24730.1| DNA-binding response regulator [Caulobacter crescentus CB15] gi|220964963|gb|ACL96319.1| two-component response regulator [Caulobacter crescentus NA1000] Length = 225 Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 53/221 (23%), Positives = 100/221 (45%), Gaps = 9/221 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + D G +++ E ++L + D ++ L + Sbjct: 3 ILLVEDDPDLTRQLKLALADAGYAVDHAPDGEEAQYLGENEPYDAVILDLGL--PKVDGV 60 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R + P++ ++ + + FD+G DD + KP H E+LAR+ A+ RR Sbjct: 61 SVLERWRRGNVTTPVLILTARGAWSDKVAGFDAGADDYLAKPFHTEELLARLRALLRRSA 120 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + G +R+ V GE L E R+L Y++ ++G+ + +T++ +Y Sbjct: 121 GHAAPSLSCGALRLDPRAARASVNGEPLRLTSLEYRLLHYMIMHQGRVIGRTELVEHLYD 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D + N +E I +LRKKL G D +++ R LGY + Sbjct: 181 Q-DFDRDSNTIEVFIGRLRKKL----GADRIETVRGLGYRL 216 >gi|187776443|ref|ZP_02802733.2| heavy metal response regulator [Escherichia coli O157:H7 str. EC4196] gi|189406170|ref|ZP_02826753.2| heavy metal response regulator [Escherichia coli O157:H7 str. EC508] gi|12516077|gb|AAG56982.1|AE005418_10 putative 2-component transcriptional regulator [Escherichia coli O157:H7 str. EDL933] gi|13362175|dbj|BAB36130.1| putative 2-component transcriptional regulator [Escherichia coli O157:H7 str. Sakai] gi|187767096|gb|EDU30940.1| heavy metal response regulator [Escherichia coli O157:H7 str. EC4196] gi|189376147|gb|EDU94563.1| heavy metal response regulator [Escherichia coli O157:H7 str. EC508] gi|209766628|gb|ACI81626.1| putative 2-component transcriptional regulator [Escherichia coli] gi|209766630|gb|ACI81627.1| putative 2-component transcriptional regulator [Escherichia coli] gi|209766632|gb|ACI81628.1| putative 2-component transcriptional regulator [Escherichia coli] gi|209766634|gb|ACI81629.1| putative 2-component transcriptional regulator [Escherichia coli] gi|209766636|gb|ACI81630.1| putative 2-component transcriptional regulator [Escherichia coli] Length = 239 Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 50/219 (22%), Positives = 97/219 (44%), Gaps = 3/219 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D ++ + G ++ + +L + ++ L G Sbjct: 19 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIML--PGMDGW 76 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + +R Q P+I ++ S+ + DSG +D + KP E+LARV A R+ Sbjct: 77 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 136 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 N+ E +R+ S + L R+E ++L L + G+ + +T I S I+G+ Sbjct: 137 LNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 195 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + N V+ I +LR K+ + + + R +GYS Sbjct: 196 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 234 >gi|86135169|ref|ZP_01053751.1| two-component system response regulator [Polaribacter sp. MED152] gi|85822032|gb|EAQ43179.1| two-component system response regulator [Polaribacter sp. MED152] Length = 229 Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 39/223 (17%), Positives = 88/223 (39%), Gaps = 9/223 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 +L+DD + + ++G + + + + ++ + G + Sbjct: 8 ILLVDDEPDILEIVGYNLRNEGYQVFTAENGQEAIKSAKKNTPHLILLDIMMPEMDGIEA 67 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117 E R I+ V + ++ + + F++G DD + KPI + +++++ + Sbjct: 68 CEKIRKIKNLDNVIIAFLTARGEDYSQVAGFEAGADDYITKPIKPKVLVSKIKSLLRRLK 127 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + S + G I + D G+ LPR+E + L + K + I + Sbjct: 128 SEEESEETLKLGDIVIDRDEYVVYKAGKKIALPRKEFELFSLLTSKPSKVFKREVILDTV 187 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G + V ++ HI KLR+K+ + D + + +GY Sbjct: 188 WGN-EVVVGGRTIDVHIRKLREKIGD----DHFKTVKGVGYKF 225 >gi|332766713|gb|EGJ96917.1| response regulator [Shigella flexneri 2930-71] gi|333017489|gb|EGK36802.1| transcriptional activator protein irlR [Shigella flexneri K-227] Length = 253 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 49/219 (22%), Positives = 97/219 (44%), Gaps = 3/219 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D ++ + G ++ + +L + ++ L G Sbjct: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIML--PGMDGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + +R Q P+I ++ S+ + DSG +D + KP E+LARV A R+ Sbjct: 61 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 N+ E +++ S + L R+E ++L L + G+ + +T I S I+G+ Sbjct: 121 LNSTLEISGLKMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 179 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + N V+ I +LR K+ + + + R +GYS Sbjct: 180 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 218 >gi|293605229|ref|ZP_06687616.1| DNA-binding response regulator [Achromobacter piechaudii ATCC 43553] gi|292816372|gb|EFF75466.1| DNA-binding response regulator [Achromobacter piechaudii ATCC 43553] Length = 252 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 47/227 (20%), Positives = 86/227 (37%), Gaps = 12/227 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D A + D D+G +E D ++ L G LE Sbjct: 18 LIVEDDAHIADLLRLHLRDEGYEVEHAADGNEGMRRLEEGDWDALVLDLML--PGIDGLE 75 Query: 63 LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + RA P+I S S + + G DD + KP E++ARV A+ RR Sbjct: 76 ICKRARAMARYTPIIITSARSSEVHRILGLELGADDYLAKPFSMLELVARVRALLRRSSA 135 Query: 122 SNNRAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 A + + R +V L RE +L + + K ++ + Sbjct: 136 IERNARIDAGSLAVHGVSIDPIARTVDVDDRRLDLTPREFDLLHFFARHPDKVFSRMDLL 195 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + ++G + E+ V +HI++LR K+ + + + GY Sbjct: 196 NHVWG-YQHEGYEHTVNTHINRLRTKIEADPSDPQRILTVWGRGYKF 241 >gi|254520016|ref|ZP_05132072.1| DNA-binding response regulator [Clostridium sp. 7_2_43FAA] gi|226913765|gb|EEH98966.1| DNA-binding response regulator [Clostridium sp. 7_2_43FAA] Length = 227 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 45/223 (20%), Positives = 91/223 (40%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D V + A D ++ NS + + ++ L Sbjct: 4 ILIIEDEESVANVLKAYLEKDKYNVSVCNSGMEALEVYKEIDFQLVILDLML--PDIDGE 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118 E+ +IIR S V + ++ SL + D G D+ + KP RE + + Sbjct: 62 EICKIIRRTSDVYIFMLTSKASLNDRIVGLDIGADEYLIKPFSPRELTARVNALFRRINT 121 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + ++ G +++ + R E++GE E IL L+ N+GK +++ Q+ ++ Sbjct: 122 SEKISDIFNDGILKIDYEKRIVELRGEEISFTPSEFDILYTLLINKGKVLSREQLIEIVF 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 G+ D + ++ HI +RKK+ + + +GY Sbjct: 182 GI-DFDGYDRTIDVHIKNIRKKIEEDTKNPKYIITVTKVGYKF 223 >gi|197303868|ref|ZP_03168903.1| hypothetical protein RUMLAC_02606 [Ruminococcus lactaris ATCC 29176] gi|197297051|gb|EDY31616.1| hypothetical protein RUMLAC_02606 [Ruminococcus lactaris ATCC 29176] Length = 223 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 50/222 (22%), Positives = 93/222 (41%), Gaps = 6/222 (2%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEK 59 M ++D +++ I G+ +GF + ++ ++ L G G Sbjct: 1 MIYCVEDDDNIRELVIYTLETTGLKAKGFADGAAFMEALAFDTPELVLLDIMLPGDDGMV 60 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYR 117 +L+ + +P+I ++ S + DSG DD V KP E+ + Sbjct: 61 LLKKLKSSSKTKDIPVIMVTAKGSEYDKVMGLDSGADDYVTKPFGMMELVSRIKAVLRRS 120 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 R ++ E I + + V G+ L +E +LE +M N+G + + Q+ + I Sbjct: 121 RKTEEKSQIELSGICMNIKKHEVTVNGKEVALTLKEFELLEKMMLNKGIVLTRDQLLTEI 180 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 +G +D E V+ H+ LR+KL K D + + R +GY Sbjct: 181 WG-YDFDGETRTVDVHVRTLRQKLGEKG--DLIQTVRGVGYR 219 >gi|119476351|ref|ZP_01616702.1| two-component response regulator PhoB [marine gamma proteobacterium HTCC2143] gi|119450215|gb|EAW31450.1| two-component response regulator PhoB [marine gamma proteobacterium HTCC2143] Length = 236 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 43/226 (19%), Positives = 92/226 (40%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A +++ G + + + ++ D+ ++ L G + Sbjct: 6 ILIVDDEAPIREMIRMSLDMAGFNCREAADTREAYRVIADSKPDLVLLDWML--PGGSGI 63 Query: 62 ELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIY 116 EL R +R + +P+I ++ + D G DD + KP RE+ + Sbjct: 64 ELLRRLRKEELTADLPVIMLTAKTDEDNKIQGLDVGADDYITKPFAPREMLSRIKALLRR 123 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + E +++ + + E R+L + M ++ + ++ Q+ Sbjct: 124 TSTGIGGSVIEVQGLKLDISSHRVYIDTRPVDMGPTEFRLLSFFMTHQERAYSRGQLLDH 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG--FDPVDSKRFLGYSI 220 ++G + VEE V+ HI +LRK L ++ G + V + R GY Sbjct: 184 VWG-GNVYVEERTVDVHIRRLRKALESEGGCYNECVQTVRGTGYRF 228 >gi|115374028|ref|ZP_01461317.1| response regulator DrrA [Stigmatella aurantiaca DW4/3-1] gi|310819375|ref|YP_003951733.1| DNA-binding response regulator [Stigmatella aurantiaca DW4/3-1] gi|115368918|gb|EAU67864.1| response regulator DrrA [Stigmatella aurantiaca DW4/3-1] gi|309392447|gb|ADO69906.1| DNA-binding response regulator [Stigmatella aurantiaca DW4/3-1] Length = 229 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 38/224 (16%), Positives = 81/224 (36%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + G +G + D+ ++ L Sbjct: 8 ILVVEDDLSILTGLSINLRIEGYDVLQAQDGRVGLAKALDEAPDLVVLDIML--PELNGF 65 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118 ++ + +R + P++ +S + + G DD V KP +E+ + R Sbjct: 66 DVLKELRQRGRDTPVVMLSAKGMEPDKILGLNLGADDYVVKPFGLQELLARIKAVLRRRH 125 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 G + V G+ G+ L +E ++L + +A+ G+ ++ ++ S + Sbjct: 126 PASGAPPVTFGDVEVDMVGKTVARAGKAVELTAQEFKLLTHFLAHPGRTFSREELLSGAW 185 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221 G FD V++ + +LR K + R LGY D Sbjct: 186 G-FDYEGSARTVDNFVRQLRLKFEPDPEAPRHFLTIRGLGYRFD 228 >gi|89096124|ref|ZP_01169017.1| two-component response regulator [Bacillus sp. NRRL B-14911] gi|89088978|gb|EAR68086.1| two-component response regulator [Bacillus sp. NRRL B-14911] Length = 238 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 43/227 (18%), Positives = 86/227 (37%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + G S+ ++ + ++ D+ ++ L Sbjct: 7 LLLVEDDGQIAKIISDHLRKYGFSVAWASTGKEGLEEFAAEAFDLVLVDLML--PELDGF 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R IR ++P++ IS ++ + F+ G DD + KP E+ AR+ + RR + Sbjct: 65 TLLRTIRKTHEIPMLIISARSEDESKVKGFNLGADDYITKPFSLEELSARITSHLRRYRR 124 Query: 122 SN-------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + + + G++ L +E +L L N + +K + Sbjct: 125 YQGVNDTSKVNVYHNGLSIDFSQKAVHLDGQLLNLTAKEYELLHLLAKNPFETFSKEALL 184 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 I+ D + N V HI LR KL++ + + GY Sbjct: 185 EMIWKQEDISA-SNTVTVHIKSLRSKLKDTSRSAVFIQTVWGSGYRF 230 >gi|310827668|ref|YP_003960025.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium limosum KIST612] gi|308739402|gb|ADO37062.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium limosum KIST612] Length = 222 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 45/223 (20%), Positives = 93/223 (41%), Gaps = 8/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ +G + L S D+ ++ Sbjct: 4 ILMVDDEEKIRAIVRKYAEFEGNEVVEAADGMEAVKLAKSQDFDIIILDIM--MPELDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + IR + P+I +S + F+ G+DD V KP +E++ RV AI +R Sbjct: 62 SACKEIRKYKDTPVIMLSARGEEYDRIHGFELGIDDYVVKPFSPKELMMRVGAILKRRGG 121 Query: 122 SNNRAETGPI---RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + I V GR + G+ + +E + Y++ NRG + + ++ + ++ Sbjct: 122 AQENKDVVKIGDLEVDFAGRRVTISGKPVEMTPKEYDLFFYMVRNRGIALTREKLITNVW 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 G +D ++ +++HI LRK L + + + R +GY + Sbjct: 182 G-YDFYGDDRTLDTHIKLLRKSLGDYS--KCIVTLRGVGYRFE 221 >gi|229031256|ref|ZP_04187262.1| Two-component response regulator [Bacillus cereus AH1271] gi|228730014|gb|EEL80988.1| Two-component response regulator [Bacillus cereus AH1271] Length = 225 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 53/225 (23%), Positives = 97/225 (43%), Gaps = 10/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L++D +++ F ++G + + L + D+ ++ L Sbjct: 6 LLVEDERRLREIVSDYFRNEGFEVIEAEDGKIALELFAEHEIDLIMLDIML--PEIDGWS 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR S VP+I ++ TL F+ G D+ V KP + ++AR + +R Sbjct: 64 VCRRIRKESAVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGV 123 Query: 123 NNRAETGPI-----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 AE + V R V GE L +E +L YLM N+G +++ + + Sbjct: 124 VGVAEENAMSLAGIEVNRLSRTVLVNGEEIILTHKEFELLVYLMENKGIVLSRQHLLDQL 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +G +D ++ V++HI KLR KL K + + +GY + Sbjct: 184 WG-YDYYGDDRTVDTHIKKLRNKLGEK--AKHIGTVIRVGYKFEE 225 >gi|83814805|ref|YP_446586.1| response regulator DrrA [Salinibacter ruber DSM 13855] gi|294508518|ref|YP_003572577.1| response regulator DrrA [Salinibacter ruber M8] gi|83756199|gb|ABC44312.1| response regulator DrrA [Salinibacter ruber DSM 13855] gi|294344847|emb|CBH25625.1| response regulator DrrA [Salinibacter ruber M8] Length = 245 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 44/229 (19%), Positives = 93/229 (40%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + D D G +++ + + D+ ++ L G Sbjct: 9 ILLVEDDDDIADLLELHLTDAGHAVDVVGDGDDGLARALTEAYDLIVLDIML--PGTDGF 66 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ R +R P++ ++ + + G DD + KP RE+LARV A++RR++ Sbjct: 67 DICRRLRQEKCPTPILMVTAKTEEVDKVLGLELGADDYITKPFSIREVLARVKALFRRVE 126 Query: 121 VSNNRAETGPIRVF--------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 V + R V+GE L +E +L + G+ ++ + Sbjct: 127 VDQETQGQADDTPIELGKVVVEPEKRKVTVEGEAVDLTSKEFELLLLFARHPGRAFSRDE 186 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + ++G + + + V +HI++LR K+ + V + +GY Sbjct: 187 LLDEVWG-YQYSGYSHTVNTHINRLRNKIEPDPSEPRYVKTVWGVGYRF 234 >gi|19745448|ref|NP_606584.1| CovR [Streptococcus pyogenes MGAS8232] gi|19747562|gb|AAL97083.1| CovR [Streptococcus pyogenes MGAS8232] Length = 228 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 90/224 (40%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + +G + + D+ ++ L Sbjct: 5 ILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLML--PEMDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R ++ ++ ++ S+ + D G DD + KP E+LAR+ A +RR + Sbjct: 63 EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRATFRRQDI 122 Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + R + PL +RE +L LM N + + + ++ S Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEIPLTKREYDLLNILMTNMNRVMTREELLSN 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +DEAVE NVV+ +I LR K+ + + R +GY I Sbjct: 183 VW-KYDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225 >gi|295693549|ref|YP_003602159.1| response regulator [Lactobacillus crispatus ST1] gi|295031655|emb|CBL51134.1| Response regulator [Lactobacillus crispatus ST1] Length = 239 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 45/232 (19%), Positives = 92/232 (39%), Gaps = 14/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D V + + + + + + ++ L + Sbjct: 8 ILLVEDEESVASFVKTELEFEDYQVVWAEDGKKALDFFTQEKPTLILLDWML--PVYDGM 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARVAA 114 + R IR S VP+I ++ S D G+DD + KP R +L R+ Sbjct: 66 TVLRRIRKQSDVPIIMLTAKNSASDISSALDQGLDDYLTKPFEIEELLARIRVVLRRLEK 125 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + ++ V + E GP++V + E L +E ++ LM + + ++ ++ Sbjct: 126 MRQQNDVPDTSLEFGPLKVDLLKHEFYCDNEKIYLTPKEFALITELMRDPEQVKSRDELL 185 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY---SIDWN 223 ++G +D + N V+ +I +R K+ N + + R LGY +D N Sbjct: 186 DTVWG-YDFVGQTNTVDVYIRTIRNKIGNPY-KKIIKTMRGLGYCLRKLDDN 235 >gi|229174262|ref|ZP_04301795.1| Two-component response regulator [Bacillus cereus MM3] gi|228609119|gb|EEK66408.1| Two-component response regulator [Bacillus cereus MM3] Length = 225 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 53/225 (23%), Positives = 98/225 (43%), Gaps = 10/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L++D +++ F ++G + + L + D+ ++ L Sbjct: 6 LLVEDERRLREIVSDYFRNEGFEVIEAEDGKIALELFAEHEIDLIMLDIML--PEIDGWS 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR S VP+I ++ TL F+ G D+ V KP + ++AR + +R Sbjct: 64 VCRRIRKESAVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGV 123 Query: 123 NNRAETGPI-----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 AE + V R V GE L +E +L YLM N+G +++ + + Sbjct: 124 VGVAEENAMSLAGIEVNRLSRTVLVDGEEIVLTHKEFELLVYLMENKGIVLSRQHLLDQL 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +G +D ++ V++HI KLR KL +K + + +GY + Sbjct: 184 WG-YDYYGDDRTVDTHIKKLRNKLGDK--AKHIGTVIRVGYKFEE 225 >gi|229182111|ref|ZP_04309403.1| hypothetical protein bcere0005_54300 [Bacillus cereus 172560W] gi|228601362|gb|EEK58891.1| hypothetical protein bcere0005_54300 [Bacillus cereus 172560W] Length = 281 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 89/228 (39%), Gaps = 10/228 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + D ++ ++ + + + D++ ++ L L Sbjct: 56 LIVEDEREIADLVELYLKNENYTVFKYYTAKEALECIDKNVLDLAILDIML--PDVSGLT 113 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + IR P+I ++ + + G DD + KP E++ARV A RR K Sbjct: 114 ICQKIRDKHTYPIIMLTAKDTEVDKITGLTIGADDYITKPFRPLELIARVKAQLRRYKKY 173 Query: 123 N-------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 N N + + + + + L E IL L N+G V+ Q+F Sbjct: 174 NGVTAQNENVIVHSGLVINISTHECSLNEKPLSLTPTEFSILRILCENKGNVVSSEQLFH 233 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222 I+G + N + HI LR+K+ + + + +GY I+ Sbjct: 234 EIWGDEYFSKSNNTITVHIRHLREKMNDTVDNPKYIKTVWGIGYKIEK 281 >gi|78063277|ref|YP_373185.1| two component heavy metal response transcriptional regulator [Burkholderia sp. 383] gi|77971162|gb|ABB12541.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia sp. 383] Length = 227 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 41/221 (18%), Positives = 90/221 (40%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + G ++ + + D+ ++ L G+ Sbjct: 3 ILIVEDEPKTGAYLRKGLTEAGYVVDWVEDGITGQHQAETEEYDLLVLDVML--PGQDGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120 L + +R P++ ++ + + + G DD + KP E+ AR+ +I R Sbjct: 61 TLLQNLRRSKSTPVLFLTARDDVGDRVKGLELGADDYLAKPFDFVELTARIKSILRRGQP 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 +N + + R QG+ L +E +L LM G+ + + I S ++ + Sbjct: 121 RDSNTLRVADLELDLTRRKATRQGDTILLTAKEFALLWLLMRREGEILPRATIASQVWDM 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + NVV+S I +LR K+ + + + R +GY ++ Sbjct: 181 -NFNSDTNVVDSAIRRLRSKIDDAYDPKLIHTVRGMGYVLE 220 >gi|332140773|ref|YP_004426511.1| response regulator in two-component regulatory system with PhoQ [Alteromonas macleodii str. 'Deep ecotype'] gi|327550795|gb|AEA97513.1| response regulator in two-component regulatory system with PhoQ [Alteromonas macleodii str. 'Deep ecotype'] Length = 224 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 56/224 (25%), Positives = 104/224 (46%), Gaps = 5/224 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ +D + + AL +G S++ ++ E +L D++ ++ Sbjct: 3 ILVAEDDSRLLTQLDALLQQNGYSVDLADNGEHALFLIKEYDYDLAIVDIG--MPKLDGF 60 Query: 62 ELPRI-IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +A P++ ++ Q ++ D+G DD + KP H+ E+LAR A+ RR Sbjct: 61 EVIRKARQADISCPILILTARDRWQEKVEGLDAGADDYLTKPFHNEELLARTKALIRRAS 120 Query: 121 VSNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 N + + + G+ L E +++EYLM N K ++KT++ IY Sbjct: 121 GQANPTIQFGPISLDTVSEELSINGKALDLTAYEYKVMEYLMLNPQKVISKTELTEHIYD 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 D ++ NV+E + +LRKKL P+++ R GY I+ N Sbjct: 181 Q-DFDLDSNVIEVFVGRLRKKLDPAGDLKPIETLRGRGYRINRN 223 >gi|120556501|ref|YP_960852.1| two component transcriptional regulator [Marinobacter aquaeolei VT8] gi|120326350|gb|ABM20665.1| two component transcriptional regulator, winged helix family [Marinobacter aquaeolei VT8] Length = 230 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 43/221 (19%), Positives = 89/221 (40%), Gaps = 5/221 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVL 61 +++DD A +++ L + D+ ++ L G G ++ Sbjct: 7 LIVDDEAPIREMIAVALEMADYDYLEAADAREAHALIIDKQPDLILLDWMLPGTSGVELA 66 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + A + +P+I ++ + + G DD + KP RE++AR+ A+ RR Sbjct: 67 RRLKKEEATADIPIIMLTAKVEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRRATP 126 Query: 122 SNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + G + E R+L++ M ++ + ++Q+ ++G Sbjct: 127 PGVDSPIEVDGLTLDPIGHRVTTVDGAINMGPTEYRLLQFFMTHQERVYTRSQLLDQVWG 186 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + VEE V+ HI +LRK L ++ + + R GY Sbjct: 187 -GNVYVEERTVDVHIRRLRKALGDRYDH-LIQTVRGTGYRF 225 >gi|290352191|dbj|BAI78806.1| putative two-component response regulator [Streptococcus pyogenes] Length = 228 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 90/224 (40%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + +G + + D+ ++ L Sbjct: 5 ILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLML--PEMDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R ++ ++ ++ S+ + D G DD + KP E+LAR+ AI+RR + Sbjct: 63 EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDCGADDYIVKPFAIEELLARIRAIFRRQDI 122 Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + R + L +RE +L LM N + + + ++ S Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +DEAVE NVV+ +I LR K+ + + R +GY I Sbjct: 183 VW-KYDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225 >gi|257091795|ref|YP_003165436.1| winged helix family two component heavy metal response transcriptional regulator [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257044319|gb|ACV33507.1| two component heavy metal response transcriptional regulator, winged helix family [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 227 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 40/224 (17%), Positives = 90/224 (40%), Gaps = 6/224 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G ++ E + D+ ++ L G Sbjct: 3 ILVVEDEPKTGNYLKQGLLEAGFVVDLARDGEDGMHCALTEAYDLVILDVML--PGIDGW 60 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118 + R IR +P++ ++ + + + G DD + KP E+LARV + Sbjct: 61 SVLRGIRKSGKDMPVLFLTARDHVDDRVRGLELGADDYLVKPFAFSELLARVRSLLRRGG 120 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + + R G+ L +E +LE L+ +G+ + ++ I S ++ Sbjct: 121 KATESEFLRAADLELDLMRRRVNRSGKRIDLTAKEFALLELLLRRQGEVLPRSLIASQVW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + + + NV+E I +LR K+ + + + R +GY ++ Sbjct: 181 DM-NFDSDTNVIEVAIRRLRAKMDDGFEPKLIRTVRGMGYVLEV 223 >gi|239930847|ref|ZP_04687800.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291439218|ref|ZP_06578608.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291342113|gb|EFE69069.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 225 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 52/223 (23%), Positives = 93/223 (41%), Gaps = 6/223 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L +D A + + +G +E D+ ++ L G LE Sbjct: 5 LLAEDDASISEPLARALRREGYEVEVREDGPGALEAGMQGGVDLVVLDLGL--PGMDGLE 62 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R +RA PL+ ++ T+ D+G DD V KP E+LARV A+ RR V Sbjct: 63 VARRLRAEGHTVPLLILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAV 122 Query: 122 SNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + T +R+ + + E L +E +L L+ + G+ V + Q+ ++ Sbjct: 123 EPQQAPATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 182 Query: 181 FDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222 + ++ HIS LRKKL + + + R +G+ + Sbjct: 183 TWWS-STKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEK 224 >gi|228971393|ref|ZP_04132019.1| Two-component response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978006|ref|ZP_04138385.1| Two-component response regulator [Bacillus thuringiensis Bt407] gi|228781667|gb|EEM29866.1| Two-component response regulator [Bacillus thuringiensis Bt407] gi|228788260|gb|EEM36213.1| Two-component response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] Length = 209 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 38/214 (17%), Positives = 77/214 (35%), Gaps = 7/214 (3%) Query: 11 VKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH 70 ++ + G + + + D ++ L + + IR Sbjct: 1 MRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIM--MPEMDGLSVCKEIRKT 58 Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRLKVSNNRAET 128 S VP+I ++ ++ G DD + KP E+ + + Sbjct: 59 SDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYTKQEQQEEIQF 118 Query: 129 GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEEN 188 GPI + R E GE L +E +L +L + G+ ++ Q+ ++G +D A Sbjct: 119 GPILINEKSRRIEADGESISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG-YDYAGSTR 177 Query: 189 VVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 V++H+ +R KL + + +GY + Sbjct: 178 TVDTHVKTMRLKLGESGN--YIQTVWGVGYKFEV 209 >gi|167769573|ref|ZP_02441626.1| hypothetical protein ANACOL_00907 [Anaerotruncus colihominis DSM 17241] gi|167668541|gb|EDS12671.1| hypothetical protein ANACOL_00907 [Anaerotruncus colihominis DSM 17241] Length = 224 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 48/221 (21%), Positives = 100/221 (45%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD + D + G +++G ++ + + D++ ++ G L Sbjct: 3 ILVADDERELLDITVKRLKAQGYAVDGCDNGDDAAYYLEQTPYDLAILDIM--MPGRDGL 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R +RA + P++ ++ ++ + D+G DD + KP E+LAR+ + RR Sbjct: 61 SILRGLRAAGRTLPVLLLTALDAVGDRVSGLDAGADDYLTKPFAFDELLARIRVLLRRSS 120 Query: 121 VSNNRAETGPIRVFS-DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 T R G+ L +E ILEYL+ N+G +++ Q+ S ++ Sbjct: 121 SDKAVVLTAEDLTMELSTRTVRRAGQEITLSSKEYAILEYLLRNKGVVLSRAQLESHVWD 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D N+V+ ++ LR+K+ + + + R +GY+I Sbjct: 181 -YDFEGGSNIVDVYVRYLRRKIDDPFEKKLIQTVRGVGYTI 220 >gi|153938240|ref|YP_001391588.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|152934136|gb|ABS39634.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|295319616|gb|ADF99993.1| DNA-binding response regulator [Clostridium botulinum F str. 230613] Length = 234 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 38/228 (16%), Positives = 79/228 (34%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + +G + ++ + Sbjct: 6 ILIVEDDVNINNMIKESLIKEGYDTGQAFHGLEAVEKFQGEDYHMVIMDVM--MPVMDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI--------HHREILARVA 113 E R IR S+VP+I +S + G DD + KP I + Sbjct: 64 ESMRRIREKSKVPIIILSAKGEDSDKIIGLGMGADDYIVKPFSVPELIARVKCNIRRAIY 123 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + N E G ++ + G+ L +E +IL+ N + K QI Sbjct: 124 YNETKSIKENKIHEYGDVKFDMNNYTVTKGGKELTLTAKEMKILKLFFENPNRVFTKVQI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 + +++G + + N V H+ +LR K+ + +++ +GY + Sbjct: 184 YDSVWGE-EFLSDYNTVTVHMRRLRSKIEDDPNNPKLIETVWGIGYKL 230 >gi|47569605|ref|ZP_00240282.1| DNA-binding response regulator [Bacillus cereus G9241] gi|47553720|gb|EAL12094.1| DNA-binding response regulator [Bacillus cereus G9241] Length = 224 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 50/223 (22%), Positives = 95/223 (42%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + D +G ++ + D+ ++ L G L Sbjct: 4 ILIIEDEESLADFLELELKYEGYKVDIQFDGRKGLEVALETNYDLILLDLML--PGLNGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +RA P+I ++ S+ + DSG DD + KP E+LAR+ I+RR + Sbjct: 62 EVCRRLRATKNTPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARMRVIFRREEH 121 Query: 122 SNNRAETGPIRVF----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 N+ + + R E L +E +L M N + + + + + + Sbjct: 122 IENKHVSSLTFKDLQLQIESRTITKGNEEIELTNKEFELLLMFMKNVNRVLTRDVLLNQV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G +D VE N+V+ ++ LR KL + + + + R GY + Sbjct: 182 WG-YDAMVETNIVDVYVRYLRNKLHSVDKEEYIQTVRGAGYIM 223 >gi|289428091|ref|ZP_06429794.1| response regulator receiver domain protein [Propionibacterium acnes J165] gi|289158691|gb|EFD06892.1| response regulator receiver domain protein [Propionibacterium acnes J165] gi|313820661|gb|EFS58375.1| response regulator receiver domain protein [Propionibacterium acnes HL036PA1] gi|313823192|gb|EFS60906.1| response regulator receiver domain protein [Propionibacterium acnes HL036PA2] gi|313825530|gb|EFS63244.1| response regulator receiver domain protein [Propionibacterium acnes HL063PA1] gi|314924865|gb|EFS88696.1| response regulator receiver domain protein [Propionibacterium acnes HL036PA3] gi|314978112|gb|EFT22206.1| response regulator receiver domain protein [Propionibacterium acnes HL072PA2] gi|314986186|gb|EFT30278.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA2] gi|314989598|gb|EFT33689.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA3] gi|315084809|gb|EFT56785.1| response regulator receiver domain protein [Propionibacterium acnes HL027PA2] gi|315088297|gb|EFT60273.1| response regulator receiver domain protein [Propionibacterium acnes HL072PA1] gi|327327165|gb|EGE68942.1| DNA-binding response regulator MtrA [Propionibacterium acnes HL096PA3] gi|328754980|gb|EGF68596.1| response regulator receiver domain protein [Propionibacterium acnes HL020PA1] gi|332675749|gb|AEE72565.1| DNA-binding response regulator MtrA [Propionibacterium acnes 266] Length = 236 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 38/224 (16%), Positives = 81/224 (36%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A + + + +G S G + R + ++ L G + Sbjct: 10 ILVVDDDAALAEMLQLVLIKEGFSTAGVGHGSDVMDVFREHRPALVLLDLML--PGRDGI 67 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH---REILARVAAIYRR 118 + + IR S VP+I ++ + +G DD V KP + Sbjct: 68 RICQDIRRESGVPIIMLTARTDTPNVVQGLGAGADDYVCKPFRSAELIARIRARLRTPVS 127 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + G + + ++ GE L E +L + + ++ + ++ Sbjct: 128 RREEGEVITVGDLTIDPVAHLVQLGGEEISLTPLEYSLLVTMAQYPNRVFSRETLLREVW 187 Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 G + + +V H+ +LR K+ N + + R +GY I+ Sbjct: 188 G-YTNITDTRLVNVHVQRLRSKVERNADHPQMIVTVRGIGYRIN 230 >gi|161508040|ref|YP_001578007.1| two-component response regulator [Lactobacillus helveticus DPC 4571] gi|160349029|gb|ABX27703.1| Two-component response regulator [Lactobacillus helveticus DPC 4571] gi|323467275|gb|ADX70962.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Lactobacillus helveticus H10] gi|323467318|gb|ADX71005.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Lactobacillus helveticus H10] Length = 228 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 39/227 (17%), Positives = 89/227 (39%), Gaps = 9/227 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + ++G S + ++ D++ + ++ + Sbjct: 3 ILVVDDDKEIVELLSIYLKNEGYEPIAAYSGKEAITKLTTT-PDIALMILDIMMPNMSGI 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------AI 115 E+ + +R S +P+I +S + +G DD V+KP + E++ARV Sbjct: 62 EVIKEVRKDSDIPIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRRSQK 121 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + + + G+ L E IL L ++ + + +IF Sbjct: 122 QVKDDEPDVLEVGPLVINRDSHEVKTIDGKAIQLTALEFGILYLLASHPNRVFSADEIFE 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221 ++ + + V H+S LR K++ G D + + +GY ++ Sbjct: 182 RVW-QQESIISAKTVMVHVSHLRDKIQKATGGEDVIQTVWGVGYKVE 227 >gi|300312356|ref|YP_003776448.1| cobalt/zinc/cadmium resistance two component response regulator protein [Herbaspirillum seropedicae SmR1] gi|300075141|gb|ADJ64540.1| cobalt/zinc/cadmium resistance two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 223 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 38/220 (17%), Positives = 89/220 (40%), Gaps = 4/220 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D D + G +++ + + D+ ++ L G Sbjct: 3 ILVIEDDPKTGDYLRKGLRESGYAVDLARNGADGLHMALEQDYDLVVLDVML--PGLDGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120 ++ +R+ +P++ ++ + + G DD + KP E++ R+ + R + Sbjct: 61 QVMSALRSKRDLPVLFLTARDHVDDRIRGLQLGADDYLVKPFSFTELVLRIRTLLRRGVT 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 E +++ QG L +E +L L+ +G+ ++++ I S I+ + Sbjct: 121 REAEVYEIADLQLDHVRHKVTRQGVNIALTNKEFMLLHLLIKRQGEALSRSVIASQIWDM 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + NVV+ I +LR K+ + + R +GY Sbjct: 181 -NFDSDTNVVDVAIKRLRAKIDAPFDKKLIHTVRSVGYMF 219 >gi|296503090|ref|YP_003664790.1| two-component response regulator vanR [Bacillus thuringiensis BMB171] gi|296324142|gb|ADH07070.1| two-component response regulator vanR [Bacillus thuringiensis BMB171] Length = 248 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 44/230 (19%), Positives = 84/230 (36%), Gaps = 12/230 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD + + ++G ++ + S+ D+ ++ L Sbjct: 22 ILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQKVSTYEVDLMILDIM--MPKRNGL 79 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARVA 113 E+ + +R ++ VP++ +S + +G DD + KP + E + Sbjct: 80 EVCQEVRENNTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSF 139 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 K + + + +V GE L E IL L +N G+ + +I Sbjct: 140 QNATSQKNEDGIIRIRSVEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEI 199 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDW 222 F ++ D V HIS LR KL G + + +GY I+ Sbjct: 200 FERVWNE-DGYGSNKTVMVHISNLRDKLETVINGEKFIHTVWGVGYKIEK 248 >gi|290475733|ref|YP_003468622.1| response regulator in two-component regulatory system with BaeS (OmpR family) [Xenorhabdus bovienii SS-2004] gi|289175055|emb|CBJ81858.1| response regulator in two-component regulatory system with BaeS (OmpR family) [Xenorhabdus bovienii SS-2004] Length = 235 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 45/222 (20%), Positives = 85/222 (38%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + I + + + D+ ++ L G + Sbjct: 10 ILIVEDEPKLGQLLIDYLQAADYQTQWLIRGDEVIAHVQKRQPDIILLDIML--PGLDGI 67 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R IR S VP++ ++ L + G DD + KP RE++ARV I RR Sbjct: 68 SICREIRRFSDVPIVMMTARTEEIDRLLGLEIGADDYICKPYSPREMVARVKTILRRCYR 127 Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + + V L E R+L+ + + G+ ++ Q+ + +Y Sbjct: 128 PQDIISEHGSLTIDENHFQARYLDRVLELTPVEFRLLKIMSSQPGRVFSRDQLLNNLYDD 187 Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 V + ++SHI LR+KL + S LGY + Sbjct: 188 H-RIVNDRTIDSHIKNLRRKLEQLDEDKSFIRSIYGLGYRWE 228 >gi|254411111|ref|ZP_05024889.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] gi|196182466|gb|EDX77452.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] Length = 224 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 42/222 (18%), Positives = 84/222 (37%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + D ++ E + + ++ L + Sbjct: 3 ILLVEDDQRIAKALAETLQDQHYIVDMATDGEAGWDFVEAFSYKLILLDVML--PKLDGI 60 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119 + +R P++ ++ + + D+G DD V KP E+ AR+ A + R Sbjct: 61 SFCQRLRRSGKMTPVLMLTAKDTSNDKVIGLDAGADDYVVKPFDLPELTARIRALLRRGN 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 E + + + + L +E +LE L+ + G+ +++ I ++ Sbjct: 121 SSLPPVLEWERLSLDPNTCQVTYAEQPLHLTPKEYGLLELLLRSHGRVQSRSAILEQLWS 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 D EE V+ HI LRKKLR D + + +GY + Sbjct: 181 WDDPPGEE-AVKVHIKDLRKKLRAAGAPPDLIQTVYGIGYRL 221 >gi|184159450|ref|YP_001847789.1| response regulator [Acinetobacter baumannii ACICU] gi|239501705|ref|ZP_04661015.1| response regulator [Acinetobacter baumannii AB900] gi|260557142|ref|ZP_05829358.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter baumannii ATCC 19606] gi|332876292|ref|ZP_08444067.1| response regulator receiver domain protein [Acinetobacter baumannii 6014059] gi|183211044|gb|ACC58442.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Acinetobacter baumannii ACICU] gi|193078315|gb|ABO13289.2| transcriptional regulator protein (OmpR family) [Acinetobacter baumannii ATCC 17978] gi|260409248|gb|EEX02550.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter baumannii ATCC 19606] gi|322509364|gb|ADX04818.1| baeR [Acinetobacter baumannii 1656-2] gi|323519388|gb|ADX93769.1| response regulator [Acinetobacter baumannii TCDC-AB0715] gi|332735564|gb|EGJ66616.1| response regulator receiver domain protein [Acinetobacter baumannii 6014059] Length = 228 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 44/225 (19%), Positives = 92/225 (40%), Gaps = 7/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + G + F+ + + ++ ++ + L Sbjct: 4 IMLVEDEVELAHLVRDYLEAAGFEVSMFHDGQDAYTSFQQRKPNLMILDLMV--PRMDGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R +R S +P+I ++ + + G DD V KP +E++ARV A+ RRL+ Sbjct: 62 TICRKVREQSDLPIIMVTARTEEIDRVLGLNMGADDYVCKPFSPKELVARVQAVLRRLER 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + R+ + Q + L E R+LE + + G+ ++ Q+ I Sbjct: 122 KAEPEQNDSFRIDKAQQRIWYQQKSLSLTPTEFRLLELFLEHVGQVYSRAQLLDHI-NPD 180 Query: 182 DEAVEENVVESHISKLRKKL----RNKLGFDPVDSKRFLGYSIDW 222 V + V++SHI LR+K+ + + + +GY ++ Sbjct: 181 SFDVADRVIDSHIKNLRRKITEVAETGNRHEWIQAVYGVGYRFEY 225 >gi|168186993|ref|ZP_02621628.1| regulatory protein VanR [Clostridium botulinum C str. Eklund] gi|169295082|gb|EDS77215.1| regulatory protein VanR [Clostridium botulinum C str. Eklund] Length = 235 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 52/234 (22%), Positives = 90/234 (38%), Gaps = 15/234 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD + + D + + + S+ + D++ I+ Sbjct: 4 ILIADDEEEIIELLSLYLEKDKHCIYSAVNGLEAFEIISNNKVDIAIIDIM--MPKIDGY 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L + IR +P+I +S + D G DD V KP + E++ARV A RR Sbjct: 62 HLIKKIREKYDIPIIMLSAKSEYSDKILGLDLGADDYVTKPFNAMEVVARVNAQLRRYNK 121 Query: 122 SNNRAE-----------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 G +R+ + L E +I+ YL+ N+G+ K Sbjct: 122 LKKNTYVNLKEKKSYLECGNLRLNINTCTLYKDNVEVYLTSTEYKIISYLLENKGRVFTK 181 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223 QIF ++ ++N + HIS LR K+ + + + R LGY +D N Sbjct: 182 KQIFEYVWEEP-FYGDDNAIMVHISNLRDKVEDDSKNPKYIKTIRGLGYKLDAN 234 >gi|148240578|ref|YP_001225965.1| two-component system response regulator [Synechococcus sp. WH 7803] gi|147849117|emb|CAK24668.1| Two-component system response regulator [Synechococcus sp. WH 7803] Length = 265 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 40/230 (17%), Positives = 86/230 (37%), Gaps = 11/230 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +LI+D +++ G ++ + + L D+ ++ L G + Sbjct: 5 ILLIEDDRDMRELVSGHLEHSGFDVQSADDGIKGQALALQYNPDLILLDLMLPKVDGLTL 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R S +P++ ++ + + F+SG DD + KP E+ R+ A+ RR Sbjct: 65 CQRLRRDERTSAIPILMLTALGGTKDKVSGFNSGADDYLTKPFDLEELQVRIKALLRRSD 124 Query: 121 VSNNRAETGPIRVFSD--------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + S + + L E +L L+ G+ VA + Sbjct: 125 RAPVGTSGNHHEILSYGPLTLVPERFEAIWFDKPVRLTHLEFELLHCLLQRHGQTVAPSL 184 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 I ++G ++ + + H+ LR KL + + + GY ++ Sbjct: 185 ILKEVWG-YEPDDDIETIRVHVRHLRTKLEPDPRKPRFIKTVYGAGYCLE 233 >gi|260904263|ref|ZP_05912585.1| two-component response regulator [Brevibacterium linens BL2] Length = 251 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 45/236 (19%), Positives = 86/236 (36%), Gaps = 20/236 (8%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ G + + L D+ ++ L Sbjct: 13 LLVVDDEPNIRELLSTSLRFAGFDVVSAANGAEALRLAEQTNPDLLVLDVML--PDMDGF 70 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPI----HHREILARVAAIY 116 + R +R P++ ++ + G DD V KP I A + Sbjct: 71 TVTRRLRQIGMNAPVVFLTARDDTSDKITGLTVGGDDYVTKPFSLEEVVARIRAVLRRTR 130 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 N G + + D + G + L E ++L YLM N + ++K+QI Sbjct: 131 SLEDEENAVIMAGDLELDDDTHEVRRSGILIDLSPTEFKLLRYLMLNTNRVLSKSQILDH 190 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFD------------PVDSKRFLGYSI 220 ++ +D + +VES+IS LR+K+ D + +KR +GY + Sbjct: 191 VW-EYDFGGDTGIVESYISYLRRKIDVTPETDAAGHPVEMEWTPMIQTKRGVGYML 245 >gi|113971609|ref|YP_735402.1| two component transcriptional regulator [Shewanella sp. MR-4] gi|113886293|gb|ABI40345.1| two component transcriptional regulator, winged helix family [Shewanella sp. MR-4] Length = 253 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 48/224 (21%), Positives = 92/224 (41%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + + + SL L + R D+ ++ L L Sbjct: 23 ILLVEDEQDLAQMIMVNLTALNFRVFHAASLHQANALLQAKRIDLVLLDRML--PDGDGL 80 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117 L + +R Q+P++ ++ T+ +SG DD + KP E+ AR + Sbjct: 81 LLCQQLRNDGQQMPVMLLTARDGEADTVLGLESGADDYMTKPFSVLELRARTKALLRRHL 140 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + E +R+ D R+ PL +E +L +L + + ++TQ+ A+ Sbjct: 141 SATPTRQLIEFEGLRIDLDSREVIAFDNPLPLTAKEFDLLTFLARHPQQVFSRTQLLDAV 200 Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 +G + E+ V SHI++LR KL + + V + +GY Sbjct: 201 WG-YRFDGFEHTVNSHINRLRGKLAHIPGSRELVQTVWGVGYKF 243 >gi|15596634|ref|NP_250128.1| two-component response regulator [Pseudomonas aeruginosa PAO1] gi|107100871|ref|ZP_01364789.1| hypothetical protein PaerPA_01001901 [Pseudomonas aeruginosa PACS2] gi|116049382|ref|YP_791815.1| putative two-component response regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|218892691|ref|YP_002441560.1| putative two-component response regulator [Pseudomonas aeruginosa LESB58] gi|254234536|ref|ZP_04927859.1| hypothetical protein PACG_00396 [Pseudomonas aeruginosa C3719] gi|254239787|ref|ZP_04933109.1| hypothetical protein PA2G_00413 [Pseudomonas aeruginosa 2192] gi|296390196|ref|ZP_06879671.1| putative two-component response regulator [Pseudomonas aeruginosa PAb1] gi|313106435|ref|ZP_07792666.1| putative two-component response regulator [Pseudomonas aeruginosa 39016] gi|9947387|gb|AAG04826.1|AE004573_5 probable two-component response regulator [Pseudomonas aeruginosa PAO1] gi|115584603|gb|ABJ10618.1| putative two-component response regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|126166467|gb|EAZ51978.1| hypothetical protein PACG_00396 [Pseudomonas aeruginosa C3719] gi|126193165|gb|EAZ57228.1| hypothetical protein PA2G_00413 [Pseudomonas aeruginosa 2192] gi|218772919|emb|CAW28731.1| probable two-component response regulator [Pseudomonas aeruginosa LESB58] gi|310879168|gb|EFQ37762.1| putative two-component response regulator [Pseudomonas aeruginosa 39016] Length = 229 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 46/221 (20%), Positives = 91/221 (41%), Gaps = 5/221 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D A D + G +++ ++ L DV ++ L G Sbjct: 4 LIVEDEAKTADYLNRGLSEQGFTVDLADNGIDGRHLALHGEYDVIVLDVML--PGVDGYG 61 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +R Q P+I ++ ++ + G DD + KP E++AR+ A+ RR Sbjct: 62 VLRALRERRQTPVIMLTARERVEDRVRGLREGADDYLIKPFSFLELVARLQALTRRGGNH 121 Query: 123 NNRAETGPIR--VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + ++ + R L +E +L L G+ ++KT I ++ + Sbjct: 122 ESHSQMRIADLSIDLLSRKVFRGNTRLELTAKEYALLCVLAQRSGEILSKTAIAELVWDI 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + NVVE I +LR KL + + R +GY ++ Sbjct: 182 -NFDTDTNVVEVAIKRLRAKLDGPFENKLLHTIRGMGYVLE 221 >gi|313899159|ref|ZP_07832682.1| response regulator receiver domain protein [Clostridium sp. HGF2] gi|312956052|gb|EFR37697.1| response regulator receiver domain protein [Clostridium sp. HGF2] Length = 233 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 50/233 (21%), Positives = 82/233 (35%), Gaps = 15/233 (6%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + ++ +D A + D G + + D++ I+ Sbjct: 4 VILIAEDEASIADAIEIYLKSQGYQTLKAANGAIAWEQLQNNTVDLAIIDVM--MPVMDG 61 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + L IR + P+I +S + + G DD V KP E+LARV A RR Sbjct: 62 IALTMKIRELYEFPIIILSAKSEDIDKITGLNIGADDYVTKPFVPMELLARVHAQLRRHL 121 Query: 121 VSNNRAETGPIRVF----------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 E ++ V GE L E RIL+ M + G+ + Sbjct: 122 RYQQLLEQKQEVEDRLLLGGIELHRKSKEVFVDGESRRLTPIEFRILQLFMEHPGQVFSS 181 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 I+ ++ + AV V HI LR+K+ N + +GY I+ Sbjct: 182 DDIYEHVWN--ETAVNTETVMVHIRNLREKIEINPRAPRYIKVVWGVGYKIEK 232 >gi|268609776|ref|ZP_06143503.1| regulatory protein VanR [Ruminococcus flavefaciens FD-1] Length = 229 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 31/222 (13%), Positives = 86/222 (38%), Gaps = 7/222 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D +L+ DG + + + E ++ D+ ++ L Sbjct: 4 ILIVEDDSLLNKTLAYNLASDGYEVMAALNAKNAEAKLTTNEYDMVLLDINL--PDGNGF 61 Query: 62 ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL ++I H ++ ++ + + ++ G D + KP + +V A++ L+ Sbjct: 62 ELCKLIKPEHPDTVVLFLTANDQESSQIRGYEVGAIDYITKPFSIVALQKKVKAMFAMLE 121 Query: 121 VSNNRAETGPI---RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + + + G+ + E ++L N + + + + + Sbjct: 122 HHKPLQDIFDNGKLFLDFSEQRAALNGKPISMSAMEFKMLHLFCKNPKRVLTRQLLLEKL 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 + + + V+E+ + + IS+LR K+ + + +GY Sbjct: 182 WDIDENYVDEHTLTTSISRLRSKIEADGDI-YIKTVYGMGYQ 222 >gi|228903532|ref|ZP_04067655.1| Two-component response regulator vanRB [Bacillus thuringiensis IBL 4222] gi|228910870|ref|ZP_04074679.1| Two-component response regulator vanRB [Bacillus thuringiensis IBL 200] gi|228968144|ref|ZP_04129148.1| Two-component response regulator vanRB [Bacillus thuringiensis serovar sotto str. T04001] gi|228791579|gb|EEM39177.1| Two-component response regulator vanRB [Bacillus thuringiensis serovar sotto str. T04001] gi|228848821|gb|EEM93666.1| Two-component response regulator vanRB [Bacillus thuringiensis IBL 200] gi|228856108|gb|EEN00645.1| Two-component response regulator vanRB [Bacillus thuringiensis IBL 4222] Length = 216 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 44/221 (19%), Positives = 97/221 (43%), Gaps = 11/221 (4%) Query: 5 IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64 I+D +++ +++ + L D+ ++ L + Sbjct: 2 IEDNPDIQELIREFLMAQNFTVDVVGAGTEGILLFQKNSYDLVLLDVML--PDIDGYSIC 59 Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYRRLK 120 +I+R S VP+I ++ + ++ + F+ G+DD + KP H+ + RV + Sbjct: 60 KIMRGQSDVPIIMLTGLHNEESEIKGFELGIDDYITKPFHYTVFIKRVEAVLRRAATKEA 119 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + + + S V G L +E I+ L+ NRGK ++++ + + ++G Sbjct: 120 EAATILQFHELMLNSTAYAAYVHGNQIELTTKEFEIIYTLLQNRGKVLSRSDLLNKVWG- 178 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ + V+++HI LRKKL G + + + +GY I+ Sbjct: 179 YEHYGDVRVIDTHIKNLRKKL----GITYIKTVKGIGYKIE 215 >gi|229162433|ref|ZP_04290394.1| Two-component response regulator [Bacillus cereus R309803] gi|228620912|gb|EEK77777.1| Two-component response regulator [Bacillus cereus R309803] Length = 225 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 53/225 (23%), Positives = 97/225 (43%), Gaps = 10/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L++D +++ F ++G + + L + D+ ++ L Sbjct: 6 LLVEDERRLREIVSDYFRNEGFEVIEAEDGKIALELFAEHEIDLIMLDIML--PEIDGWS 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120 + R IR S VP+I ++ TL F+ G D+ V KP + ++AR + +R Sbjct: 64 VCRRIRKESAVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKRADGV 123 Query: 121 ---VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 N I V R V GE L +E +L YLM N+G +++ + + Sbjct: 124 VGVAEENTMSLAGIEVNRLSRTVLVDGEEIILTHKEFELLVYLMENKGIVLSRQHLLDQL 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +G +D ++ V++HI KLR KL +K + + +GY + Sbjct: 184 WG-YDYYGDDRTVDTHIKKLRNKLGDK--AKHIGTVIRVGYKFEE 225 >gi|255656708|ref|ZP_05402117.1| two-component response regulator [Clostridium difficile QCD-23m63] gi|296452468|ref|ZP_06894168.1| response regulator [Clostridium difficile NAP08] gi|296877817|ref|ZP_06901842.1| response regulator [Clostridium difficile NAP07] gi|296258700|gb|EFH05595.1| response regulator [Clostridium difficile NAP08] gi|296431189|gb|EFH17011.1| response regulator [Clostridium difficile NAP07] Length = 234 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 46/229 (20%), Positives = 88/229 (38%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD +++ L +G + + E L S + I ++ + Sbjct: 9 ILVADDNPEIREIVEILLTGEGYEVIMATNGEEAVNLADST---IDLIILDVVMPVKTGF 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 IR + P++ ++ + F +G DD ++KP + E+++RV ++ RR + Sbjct: 66 VACSEIREKTTAPILFLTAKTQDSDKVIGFSAGGDDYLSKPFSYSELISRVKSLLRRYYI 125 Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + V D +D + G+ L E IL ++ NR K + + Sbjct: 126 YQGKEKEKEPNILKTKELCVNLDTQDVTLNGQPVFLTTIEYSILVLMLKNRKKVFSSENL 185 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221 + I+ N + HI LRKKL + + GY ID Sbjct: 186 YETIWDEQYFYTANNTIMVHIRNLRKKLEKDQKNPQYIKTAWGKGYYID 234 >gi|218291334|ref|ZP_03495294.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius LAA1] gi|258512228|ref|YP_003185662.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|218238780|gb|EED05994.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius LAA1] gi|257478954|gb|ACV59273.1| two component transcriptional regulator, winged helix family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 231 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 50/222 (22%), Positives = 96/222 (43%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 +L++D + L + +++ + E L + D++ ++ L G + Sbjct: 3 ILLVEDEVRLASALKQLLKEHQYAVDVAHDGETGCDLALTDSYDLAILDIMLPKMSGLDI 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118 L R A Q P++ ++ +++ + D+G DD + KP ++E+ R + Sbjct: 63 LRAMRK--AGLQTPVLLLTAKDTVEDRVTGLDAGADDYLVKPFDNKELLARVRALSRRTG 120 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + E GP R+ + R GE L +E ++LE M N K ++K I ++ Sbjct: 121 QIAGGDAIEAGPFRLDLNTRTVTRNGEPLALTAKEFQLLELFMRNPNKVLSKEVILDRVW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G D V N VE+++ LRKK+ + + R +GY Sbjct: 181 G-PDADVIGNAVENYVHFLRKKIDEPDLPSYITTVRGVGYMF 221 >gi|167757351|ref|ZP_02429478.1| hypothetical protein CLORAM_02901 [Clostridium ramosum DSM 1402] gi|237735574|ref|ZP_04566055.1| two-component system transcriptional regulator [Mollicutes bacterium D7] gi|167703526|gb|EDS18105.1| hypothetical protein CLORAM_02901 [Clostridium ramosum DSM 1402] gi|229381319|gb|EEO31410.1| two-component system transcriptional regulator [Coprobacillus sp. D7] Length = 236 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 42/234 (17%), Positives = 93/234 (39%), Gaps = 17/234 (7%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D +++ + G ++ ++ E L + ++ ++ + Sbjct: 5 ILIVEDEKGIRETVTVFLKNQGYNVLQASNGEEGLALIEANEIHLAVVDIM--MPVMDGI 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + +R + P+I +S + + G DD + KP E++ARV + RR Sbjct: 63 TMVLKLRENYDFPVIFLSAKSEDIDKITGLNIGGDDYITKPFEAMELIARVNSNLRRYNQ 122 Query: 122 SNNRAETGPIRV------------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 E + ++ V L +E +ILE LM+ G+ + Sbjct: 123 ILALKENRNLNNNQQRLVVGGLELDKFTKEVFVNDRGVRLTAKEFQILELLMSYPGRVYS 182 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 +I+ A++ +EA+ + H+ KLR+K+ N + + +GY I+ Sbjct: 183 AEEIYEAVW--KEEAINTETIMVHVRKLREKIEANPKKPEYLKVVWGIGYKIEK 234 >gi|150024463|ref|YP_001295289.1| two-component system response regulatory protein involved in phosphate regulation [Flavobacterium psychrophilum JIP02/86] gi|149771004|emb|CAL42471.1| Two-component system response regulatory protein involved in phosphate regulation [Flavobacterium psychrophilum JIP02/86] Length = 228 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 40/225 (17%), Positives = 88/225 (39%), Gaps = 10/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 +L+DD V + +G + + + + ++ + G + Sbjct: 8 ILLVDDEPDVLEIVGYNLSQEGYQIFTAENGKEAVQKAKKHNPHLIIMDVMMPEMDGMEA 67 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIY 116 E+ R + + V + ++ + + FD+G DD + KPI + ++ A + I Sbjct: 68 CEIIRKVPELNNVIITFLTARNEDYSQVAGFDAGADDYIAKPIKPKLLVSKVKALLRRIK 127 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + G I + + + G LPR+E + L + GK + +I Sbjct: 128 EEESPKSETLIIGDIEINREEYNVIKDGVEIILPRKEFELFYLLASKPGKVFKREEILDK 187 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G + V ++ HI KLR+K+ + + + + +GY + Sbjct: 188 VWG-SEVVVGGRTIDVHIRKLREKIGD----EYFKTTKGIGYKFE 227 >gi|150388920|ref|YP_001318969.1| two component transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149948782|gb|ABR47310.1| two component transcriptional regulator, winged helix family [Alkaliphilus metalliredigens QYMF] Length = 232 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 46/223 (20%), Positives = 90/223 (40%), Gaps = 9/223 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + D A + ++ + + D ++ L G E Sbjct: 9 LIVEDEKNIADVIKAYLEKEKYEAIVTHNGKEAIDIFQQQSFDFVILDLML--PGLSGEE 66 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + IR S VP++ ++ + D G DD + KP +E++ARV AI RR Sbjct: 67 ICNRIRLQSDVPILMLTAKVEETDQIHGLDIGADDYMTKPFSPKELMARVRAIMRRTSNE 126 Query: 123 NNRAETGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 RA + V G + +GE+ L E ++L + N GK ++ ++ + Sbjct: 127 GVRAHLIELNGGDLKVDIRGMETRKKGELMDLTATEFKLLSIFIQNSGKVFSREELVLKV 186 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G +D + ++ HI +R K+ + + + +GY Sbjct: 187 LG-YDYVGYDRTIDVHIKNVRHKIE-CEQYKYIVTVYGVGYRF 227 >gi|116492234|ref|YP_803969.1| DNA-binding response regulator [Pediococcus pentosaceus ATCC 25745] gi|116102384|gb|ABJ67527.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Pediococcus pentosaceus ATCC 25745] Length = 234 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 44/227 (19%), Positives = 87/227 (38%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + ++ + D ++ L + Sbjct: 5 ILVVDDEPAIVTLITYNLEQANYQVVSVDNGLDAVEIVQKGLVDFVIMDLML--PQLDGI 62 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E + IR Q+P+I ++ S + + G DD + KP +E+L+R+ I RR Sbjct: 63 EATKQIRKFDEQIPIIMLTAKTSQVDKILGLELGADDYITKPFSPQELLSRIKVILRRTD 122 Query: 121 V------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + I + + E L E ++L YL N + +++ QI Sbjct: 123 RAINLAEIDPTLQAENIAIDFKRMVVKKNNEKIQLTPNEFKLLRYLYKNANQVLSRDQIL 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++G ++ + +V+ HIS LR KL + + + R GY Sbjct: 183 EKVWG-YEYGGQTRIVDIHISHLRDKLENDPKHPQLIKTIRGFGYEF 228 >gi|170760105|ref|YP_001787670.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] gi|169407094|gb|ACA55505.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] Length = 235 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 38/228 (16%), Positives = 81/228 (35%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + +G + + ++ + Sbjct: 6 ILIVEDDVNINNMIKESLIKEGYDIGQAFHGLEAVEKFQGENYHMVIMDIM--MPVMDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI--------HHREILARVA 113 E R IR S+VP+I +S + G DD + KP I + Sbjct: 64 ESMRRIREKSKVPIIILSAKGEDSDKIIGLGMGADDYIVKPFSVPELIARVKCNIRRAIY 123 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + N E G ++ + +G+ L +E +IL+ N + K QI Sbjct: 124 YNETKSIKENKIYEYGDVKFDMNNYIVTKEGKELTLTAKEMKILKLFFENPNRVFTKVQI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 + +++G + + N V H+ +LR K+ + +++ +GY + Sbjct: 184 YDSVWGE-EFLSDYNTVTVHMRRLRSKIEDDPNNPKLIETVWGIGYKL 230 >gi|118477643|ref|YP_894794.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|225864192|ref|YP_002749570.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|229184439|ref|ZP_04311645.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus BGSC 6E1] gi|118416868|gb|ABK85287.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|225788434|gb|ACO28651.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|228599018|gb|EEK56632.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus BGSC 6E1] Length = 227 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 44/224 (19%), Positives = 92/224 (41%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G E + + D+ ++ L L Sbjct: 5 ILIVEDEEKIARVVQLELEFEGYESEIAKTGTEAMENFENGNWDLILLDVML--PNISGL 62 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIY 116 E+ R IR ++ +P+I ++ S+ + D G D + KP I A + Sbjct: 63 EVLRRIRLKNAVIPIILLTARDSVVDKVSGLDQGASDYITKPFQIEELLARIRACLRISN 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + N+ + + + R+ + + L RE +L +LM + + + + QI + Sbjct: 123 VVKEEENSSYQIADLYLDEKTREVKRGNSLIDLTPREFDLLLFLMKHENQVLNREQIVTN 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G FD + NVV+ +I LRKK+ + + + R +GY + Sbjct: 183 VWG-FDYYGDTNVVDVYIRYLRKKVDCNVDVPLIHTVRGVGYVL 225 >gi|58338068|ref|YP_194653.1| two-component response regulator [Lactobacillus acidophilus NCFM] gi|227902754|ref|ZP_04020559.1| response regulator [Lactobacillus acidophilus ATCC 4796] gi|58255385|gb|AAV43622.1| two-component response regulator [Lactobacillus acidophilus NCFM] gi|227869417|gb|EEJ76838.1| response regulator [Lactobacillus acidophilus ATCC 4796] Length = 228 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 40/227 (17%), Positives = 90/227 (39%), Gaps = 9/227 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + ++G S + ++ D++ + ++ + Sbjct: 3 ILVVDDDKEIVELLSIYLKNEGYEPVTAYSGKEAITKLTTT-PDIALMILDVMMPNMSGI 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------AI 115 E+ + +R S +P+I +S + +G DD V+KP + E++ARV Sbjct: 62 EVIKEVRKDSDIPIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRRSQK 121 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + + + + G+ L E IL L ++ + + +IF Sbjct: 122 QVKDEKPDILEVGPLVINRDSHEVKTIDGKAIQLTALEFGILYLLASHPNRVFSADEIFE 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 ++ + V V H+S LR K++ G D + + +GY ++ Sbjct: 182 RVW-QQESIVSAKTVMVHVSHLRDKIQKATDGEDVIQTVWGVGYKVE 227 >gi|161525185|ref|YP_001580197.1| two component transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|189350076|ref|YP_001945704.1| OmpR family two-component system phosphate regulon response regulator [Burkholderia multivorans ATCC 17616] gi|160342614|gb|ABX15700.1| two component transcriptional regulator, winged helix family [Burkholderia multivorans ATCC 17616] gi|189334098|dbj|BAG43168.1| OmpR family two-component system phosphate regulon response regulator [Burkholderia multivorans ATCC 17616] Length = 233 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 44/226 (19%), Positives = 81/226 (35%), Gaps = 8/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++++D + + G + E + L S D+ ++ L G G Sbjct: 5 ILVVEDEPAISELISVNLQHAGHCPIRAYNAEQAQNLISDVLPDLVLLDWMLPGKSGIAF 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILA------RVAA 114 R +P+I ++ Q + + G DD V KP +E++A R A Sbjct: 65 ARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRRRA 124 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 V + L E R+L + M + + ++TQ+ Sbjct: 125 PQLTEDVVSINGLRLDPATHRVAAQTNGSEIKLDLGPTEFRLLHFFMTHPERVHSRTQLL 184 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G VEE V+ HI +LR L+ +++ R GY + Sbjct: 185 DQVWGDH-VFVEERTVDVHIKRLRAALKPAGCDAMIETVRGSGYRL 229 >gi|145593748|ref|YP_001158045.1| response regulator receiver [Salinispora tropica CNB-440] gi|145303085|gb|ABP53667.1| response regulator receiver [Salinispora tropica CNB-440] Length = 230 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 43/225 (19%), Positives = 87/225 (38%), Gaps = 10/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD V D G + + ++ D+ ++ L G LE Sbjct: 6 LVVDDDRTVSDVVCRYLVHAGYQVRHVGDGDSALAAVAAEPPDLVVLDLML--PGLDGLE 63 Query: 63 LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYR 117 + R +R VP+I ++ + G DD ++KP RE++ RV Sbjct: 64 VCRRLRTKPGGVPIIMLTARGDEADRVLGLQLGADDYLSKPFSPRELVLRVGSVLRRSGE 123 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 G + V + R + G L RE +L YLM + + + + ++ + Sbjct: 124 PRTAPATVLRDGALVVETGPRVARLHGHELTLTVREFDLLAYLMRHPARALGRAELLERV 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 +G +++ V H+ +LR+K+ + + + +GY + Sbjct: 184 WGWN--FGDQSTVTVHVRRLREKVEADPANPHRIVTVWGIGYRYE 226 >gi|229080381|ref|ZP_04212905.1| hypothetical protein bcere0023_30270 [Bacillus cereus Rock4-2] gi|228702943|gb|EEL55405.1| hypothetical protein bcere0023_30270 [Bacillus cereus Rock4-2] Length = 230 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 46/221 (20%), Positives = 89/221 (40%), Gaps = 7/221 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + + G ++ + + + ++ L G Sbjct: 15 ILLVEDDEHICNAVKVFLSGAGYKVDACFNGDEAHTKFYDNPYQLVILDILL--PGMNGH 72 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL R R + P++ ++ + + FD+ DD V KP + +L RV A+ RR Sbjct: 73 ELLREFRKLNNTPVLMMTALSDDENQIRSFDAEADDYVTKPFKIQLLLKRVEALLRRSGA 132 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 G + + + E L +E IL L+ GK ++ I S ++G + Sbjct: 133 VAKEIHYGKLTLLPEDFKVFYDDEELLLTLKEFEILMLLVQKNGKTLSHEVILSRVWG-Y 191 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 D + + V +HI LR KL + + + + R +GY ++ Sbjct: 192 DFDGDGSTVHTHIKNLRAKLPD----NIIKTVRGVGYRLEE 228 >gi|256833265|ref|YP_003161992.1| two component transcriptional regulator, winged helix family [Jonesia denitrificans DSM 20603] gi|256686796|gb|ACV09689.1| two component transcriptional regulator, winged helix family [Jonesia denitrificans DSM 20603] Length = 236 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 54/230 (23%), Positives = 97/230 (42%), Gaps = 14/230 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 V++DD +++ G + L + D+ ++ L Sbjct: 6 LVVVDDEPNIRELLATSLRFAGFEVFAAADGLSAIQLITDTTPDLVVLDVML--PDLDGF 63 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +R+ P++ ++ Q + G DD V KP E++AR+ AI RR Sbjct: 64 EVTRRLRSKDIHSPVLFLTAKDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTN 123 Query: 121 VSNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + + + D + G V L E ++L YLM N G+ ++K QI Sbjct: 124 HQIDDNDAVLSYADLDMDEDSHEVRRAGVVVDLSPTEFKLLRYLMLNSGRVLSKQQILDH 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFD------PVDSKRFLGYSI 220 ++ +D + N+VES+IS LR+K+ D + +KR +GY + Sbjct: 184 VWD-YDWGGDANIVESYISYLRRKIDAVTQPDGSPVQPLIHTKRGVGYML 232 >gi|195978766|ref|YP_002124010.1| TCS response regulator CovR-like [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|225867917|ref|YP_002743865.1| response regulator protein [Streptococcus equi subsp. zooepidemicus] gi|225871169|ref|YP_002747116.1| response regulator protein [Streptococcus equi subsp. equi 4047] gi|195975471|gb|ACG62997.1| TCS response regulator CovR-like [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|225700573|emb|CAW95079.1| response regulator protein [Streptococcus equi subsp. equi 4047] gi|225701193|emb|CAW98111.1| response regulator protein [Streptococcus equi subsp. zooepidemicus] Length = 228 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 90/224 (40%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + +G + + D+ ++ L Sbjct: 5 ILIIEDEKNLARFVSLELQHEGYEVTVEVNGREGLETALEKDFDLILLDLML--PEMDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R ++ ++ ++ S+ + D G DD + KP E+LAR+ AI+RR + Sbjct: 63 EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122 Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + R + L +RE +L LM N + + + ++ S Sbjct: 123 ESEKKTPSQGVYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +DEAVE NVV+ +I LR K+ + + R +GY I Sbjct: 183 VW-KYDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225 >gi|164688779|ref|ZP_02212807.1| hypothetical protein CLOBAR_02426 [Clostridium bartlettii DSM 16795] gi|164602255|gb|EDQ95720.1| hypothetical protein CLOBAR_02426 [Clostridium bartlettii DSM 16795] Length = 216 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 45/221 (20%), Positives = 94/221 (42%), Gaps = 7/221 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A ++D G + E + + D+ ++ + G Sbjct: 3 ILVVEDEAPIRDLISINLQLVGYEVFTAEDGIIAEKFLENQKVDLILLDVMI--PGIDGF 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L I+ H P+I ++ S+ + G +D + KP E+LARV + RR Sbjct: 61 SLIEKIKKH-NTPVIFVTAKESVLDRVKGLRLGAEDYIIKPFETIELLARVEVVLRRYNK 119 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + I V ++ R + + L +E +L L+ N+ + +++ QI ++ F Sbjct: 120 NKQTIKFKNIEVDTEQRIVNLNNKEVYLTVKEYELLVLLLQNKNRALSRDQILERVW-RF 178 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + E V+ HI ++R+KL K + + +GY ++ Sbjct: 179 EYGGETRTVDIHIQRIREKLDLKNN---IKTVFKVGYRLEE 216 >gi|146306206|ref|YP_001186671.1| two component heavy metal response transcriptional regulator [Pseudomonas mendocina ymp] gi|145574407|gb|ABP83939.1| two component heavy metal response transcriptional regulator, winged helix family [Pseudomonas mendocina ymp] Length = 224 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 45/222 (20%), Positives = 95/222 (42%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G ++ + + + A ++ ++ L Sbjct: 3 ILIVEDELKTAEYLHQGLTESGYVVDIATNGVDGLHMAAQASYELIILDVDL--PEIDGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119 + IR +S+ P++ ++ L L FDSG DD + KP E+LARV + Sbjct: 61 GVLASIRRNSRTPVMMLTARGRLADKLKGFDSGADDYLVKPFEFPELLARVRSLLRRGEQ 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + + + + G+ L +E +L LM G+ +++TQI S ++ Sbjct: 121 VSAPDVLKVDDLELDPARHRAYRNGQRIDLTTKEFALLHLLMRRSGEVLSRTQIISLVWD 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + + NVVE I +LR K+ + + + R +GY ++ Sbjct: 181 M-NFDCDTNVVEVSIRRLRAKIDDPFENKLIHTLRGVGYVLE 221 >gi|221134984|ref|ZP_03561287.1| osmolarity response regulator [Glaciecola sp. HTCC2999] Length = 241 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 38/229 (16%), Positives = 87/229 (37%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ + G + + E + L + ++ L GE L Sbjct: 8 ILVVDDDMRLRSLLERYLVEQGFQVRSAANAEQMDRLLERENFHLIVLDLML--PGEDGL 65 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112 + R +R + +P+I ++ + + G DD + KP + RE + + Sbjct: 66 SICRRLRQKENTIPIIMLTAKGDEIDRIIGLEMGADDYLPKPFNPRELLARAKAVLRRKS 125 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 A + E ++ R+ G+ L E +L+ L+ + + +++ + Sbjct: 126 AEAPGAPSQAEQIVEFAHYKLNLATREMSADGKPMTLTSGEFAVLKSLVTHPREPLSRDK 185 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + + G D E ++ +S+LR+ L + + + LGY Sbjct: 186 LMNLARGR-DYGALERSIDVQVSRLRRMLEQDPTNPRYIQTVWGLGYVF 233 >gi|5764628|gb|AAD51348.1|AF173226_5 SmeR [Stenotrophomonas maltophilia] Length = 229 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 51/221 (23%), Positives = 96/221 (43%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + G++ E + + + D+ ++ L + + Sbjct: 11 ILIVEDEPRLASVLRDYLAAAGMASEWVDDGGQVIDAFARYQPDLVLLDLMLPQR--DGV 68 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 +L R +RA S VP+I ++ L + G DD + KP RE++ARV A+ RR + Sbjct: 69 DLCRELRASSDVPVIMVTARVEEIDRLLGLEIGADDYICKPFSPREVVARVMAVLRRYRP 128 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 G + + G+ L E R+L L+A G+ A+ ++ +Y Sbjct: 129 DPGARANGGLHIDEPAARATWNGKGLDLTPVEYRLLRTLLATPGRIWARDELLDRLYLDH 188 Query: 182 DEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 V+ V+SH+ LR+KL + +P+ S +GYS + Sbjct: 189 RVVVD-RTVDSHVRNLRRKLADAGMEGEPIRSVYGMGYSYE 228 >gi|295109503|emb|CBL23456.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus obeum A2-162] Length = 228 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 43/220 (19%), Positives = 96/220 (43%), Gaps = 3/220 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + S+ +S + + ++++ I L+ Sbjct: 6 ILVVDDEIKLLQTVTEFLTLQNFSVMQASSGSEALKIFTENKKEIELILLDLMLPDISGY 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R IR S VP+I +S + ++ F+ G DD + KP + + A+ +R Sbjct: 66 SVLREIRKISDVPVIILSARSEVTDQMNGFEKGADDYITKPFSLGLVKLHIEAVLKRAGK 125 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 N E G I++ + + E+ + RRE +L Y + ++ +++ I +A++ + Sbjct: 126 MKNILECGKIKIEKGRQLVYREDEMLEMTRREYELLLYFIEHKETVLSRETILNAVWD-Y 184 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D A + V++ + ++RKKL + + + +GY + Sbjct: 185 DYAGDVRTVDTLVKQIRKKLGDDCN--YIHTVYGIGYLFE 222 >gi|262281095|ref|ZP_06058877.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202] gi|299768811|ref|YP_003730837.1| response regulator [Acinetobacter sp. DR1] gi|262257326|gb|EEY76062.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202] gi|298698899|gb|ADI89464.1| response regulator [Acinetobacter sp. DR1] Length = 228 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 44/224 (19%), Positives = 92/224 (41%), Gaps = 7/224 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L++D + G + F+ + + ++ ++ + L Sbjct: 5 MLVEDEVELAHLVRDYLEAAGFEVSMFHDGQDAYASFQQRKPNLMVLDLMV--PRMDGLT 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +R S +P+I ++ + + G DD V KP +E++ARV A+ RRL+ Sbjct: 63 ICRKVREQSDLPIIMVTARTEEIDRVLGLNMGADDYVCKPFSPKELVARVQAVLRRLERK 122 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 + R+ + Q + L E R+LE + + G+ ++ Q+ I Sbjct: 123 AEPEQNDSFRIDKAQQRIWYQQKSLSLTPTEFRLLELFLEHVGQVYSRAQLLDHI-NPDS 181 Query: 183 EAVEENVVESHISKLRKKLRNKLG----FDPVDSKRFLGYSIDW 222 V + V++SHI LR+K+ + + + +GY ++ Sbjct: 182 FDVADRVIDSHIKNLRRKISEAAETGNRHEWIQAVYGVGYRFEY 225 >gi|255524900|ref|ZP_05391848.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|255511378|gb|EET87670.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] Length = 231 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 43/226 (19%), Positives = 91/226 (40%), Gaps = 12/226 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + D+ ++ S + D+ ++ L + Sbjct: 6 ILIVDDDKDIVNLITDILEDELYQVDKAYSGQEAINKVEKESFDLIILDIML--PDIDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R IR +I ++ + + G DD + KP E+ ARV A R+ K Sbjct: 64 DVCRKIRDKFLGTIIFLTAKNRGVDKIVGLEIGADDYITKPFDDGELCARVKAHLRKQKR 123 Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 ++ I + + + V + L +E ++L Y++ N + + QI+ Sbjct: 124 LNSLNLKNDETIRYKSIEINKNSFEVFVDRQRIILSTKEFQVLYYMIENHNIVLTREQIY 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++++G D + N V HI KLR+K+ + + +GY Sbjct: 184 NSVWGFGDF-GDINTVTVHIKKLREKI--PGCDRFIKTVWGIGYKF 226 >gi|189913071|ref|YP_001964960.1| Response regulator [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|189913405|ref|YP_001964634.1| Two-component response regulator [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|167777747|gb|ABZ96047.1| Response regulator [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167781473|gb|ABZ99770.1| Two-component response regulator [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 241 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 45/233 (19%), Positives = 90/233 (38%), Gaps = 14/233 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + + + F + E S D+ ++ L + Sbjct: 4 ILVIEDDPDIGNLIRKSLDSAHYTTSVFENGEDGLKFYKSNHPDLVILDLSL--PDIDGM 61 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R IR + P+ +S + + G DD + KP RE+ RV +RR Sbjct: 62 EICRSIRKSDESTPIFILSARTEEIDRIMGLELGADDYITKPFSVRELKTRVDVFFRRWD 121 Query: 121 VSNNRAETGPI---------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 ++ S R + + + R+E IL+ L + GK ++ Sbjct: 122 KKIGIKPNVGQAGEIIRGALKIDSIRRRVTLNENIINISRKEFDILQLLAGSPGKVFSRE 181 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDWN 223 I +++G+ + E +++SHI ++R KL + +++ +GY N Sbjct: 182 MILESVWGV-EWDGFERMIDSHIKRIRSKLEKNSAQPEWIETIWGIGYRFTDN 233 >gi|150015424|ref|YP_001307678.1| two component transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149901889|gb|ABR32722.1| two component transcriptional regulator, winged helix family [Clostridium beijerinckii NCIMB 8052] Length = 225 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 46/223 (20%), Positives = 99/223 (44%), Gaps = 5/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD +++ + D+G S+ + + D+ ++ Sbjct: 4 ILVIDDDDYIRELICTVLKDEGFSVAEAVNGRDALEKLGEEKIDLCVLDIM--MPQMDGY 61 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E + R + +P++ ++ L + F+ G DD + KP E+L R+ A+ RR K Sbjct: 62 EFCKQARRYYEDMPILMLTAKSELSQKVKGFELGTDDYLTKPFEIDELLVRIKALLRRYK 121 Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 V+ +R + E F +P +E +L L + GK +++ ++ ++G Sbjct: 122 VAASRIINIGNLVMDKSSYTVISNNEQFDIPMKEFELLFMLGSYPGKTLSRDRLIEEVWG 181 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 L D E ++ HI++LR++ ++ + + + R LGY ++ Sbjct: 182 L-DFEGNERTLDVHINRLRERFQSDIYKFKITTIRGLGYRVEE 223 >gi|260103047|ref|ZP_05753284.1| response regulator [Lactobacillus helveticus DSM 20075] gi|260083137|gb|EEW67257.1| response regulator [Lactobacillus helveticus DSM 20075] gi|328464398|gb|EGF35807.1| two-component response regulator [Lactobacillus helveticus MTCC 5463] Length = 228 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 39/227 (17%), Positives = 89/227 (39%), Gaps = 9/227 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + ++G S + ++ D++ + ++ + Sbjct: 3 ILVVDDDKEIVELLSIYLKNEGYEPIAAYSGKEAITKLTTT-PDIALMILDIMMPNMSGI 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------AI 115 E+ + +R S +P+I +S + +G DD V+KP + E++ARV Sbjct: 62 EVIKEVRKDSDIPIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRRSQK 121 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + + + G+ L E IL L ++ + + +IF Sbjct: 122 QVKDDEPDVLEVGPLVINRDSHEVKTIDGKAIQLTALEFGILYLLASHPNRVFSADEIFE 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221 ++ + + V H+S LR K++ G D + + +GY ++ Sbjct: 182 RVW-KQESIISAKTVMVHVSHLRDKIQKATGGEDVIQTVWGVGYKVE 227 >gi|298528299|ref|ZP_07015703.1| two component transcriptional regulator, winged helix family [Desulfonatronospira thiodismutans ASO3-1] gi|298511951|gb|EFI35853.1| two component transcriptional regulator, winged helix family [Desulfonatronospira thiodismutans ASO3-1] Length = 232 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 38/224 (16%), Positives = 88/224 (39%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++I+D +++ G + ++ + + ++ ++ L G +V Sbjct: 6 ILVIEDEEDIQNLLHINLEAAGYRVFLTDNGYDGLKIAREEQPELIILDLMLPHMDGLEV 65 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIY 116 + + +I ++ + F+ G DD V KP R I A + Y Sbjct: 66 CRRLKKDDKLKDIIVIMVTAKSEEMDRVVGFELGADDYVVKPFSIRELLLRIKAVLRREY 125 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 R + + + + +V G L E ++L+ ++ N G+ + + ++ + Sbjct: 126 RSDSGVERIWKHKGLEFDFEAMEFKVDGINVSLTATEMKLLQEMVQNEGRVLTRERLLNN 185 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G ++ V++H+ +LR KL D + + R LGY Sbjct: 186 VWG-YEFEGYARTVDTHVRRLRAKLEPYS--DLIQTARGLGYKF 226 >gi|116511831|ref|YP_809047.1| DNA-binding response regulator [Lactococcus lactis subsp. cremoris SK11] gi|116107485|gb|ABJ72625.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactococcus lactis subsp. cremoris SK11] Length = 228 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 45/221 (20%), Positives = 95/221 (42%), Gaps = 3/221 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + D + + + A+ V + + L Sbjct: 6 LIVEDEPSISDYVKKELVFEDYQVSTAFDGLAALEVFEQAKPAVDVVLLDWMIPKLDGLT 65 Query: 63 LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R ++ P+I ++ + + D+G DD + KP E+LAR+ I+R+ Sbjct: 66 VLRRMKKIQPNTPIIFLTARDYIGDKVAGLDAGADDYITKPFEIEELLARLRLIFRKWST 125 Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 S ++ +V EV G+ L +RE +L Y + +RG V++ I ++G+ Sbjct: 126 SCSKVYELDYLKVDLTAHTTEVAGKTVNLTQREFALLSYFLEHRGIVVSRADILDDVWGM 185 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D +EN V++++ LR K+ +++ R +GY ++ Sbjct: 186 -DFDGQENTVDAYVRYLRAKIDLPNHKSLIETVRGVGYRLN 225 >gi|300932509|ref|ZP_07147765.1| two-component system response regulator [Corynebacterium resistens DSM 45100] Length = 235 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 47/223 (21%), Positives = 90/223 (40%), Gaps = 9/223 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD A + D G +E +S + + + D ++ G Sbjct: 12 LVVDDEANISDLLKVSLKFQGFDVETADSGQAALDIVDEYQPDAFILDVM--MPGMDGFS 69 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L +RA P++ ++ ++ + G DD V KP E++ R+ I RR+ Sbjct: 70 LLNKLRAKGHDAPVLFLTAKDGVEDRIHGLTIGADDYVTKPFSLEEVITRLRVILRRVSP 129 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEV----FPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + D + L E ++L YLM N ++K +I + Sbjct: 130 EDEKESNVISYEDLTLDDDMHEVTKAGKVVDLSPTEFKLLRYLMVNAEVVLSKAKILDHV 189 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + +D + NVVES++S LR+K+ + + R +GY + Sbjct: 190 W-NYDFGGDGNVVESYVSYLRRKIDTD-DPRLIHTVRGVGYVL 230 >gi|226946662|ref|YP_002801735.1| response regulator [Azotobacter vinelandii DJ] gi|226721589|gb|ACO80760.1| response regulator [Azotobacter vinelandii DJ] Length = 267 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 46/230 (20%), Positives = 93/230 (40%), Gaps = 14/230 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ D G ++ + + E L R DV ++ GE L Sbjct: 31 ILVVDDEQDLRALLQRYLSDQGYAVRALDGGQHLERLLGRERFDVLVLDVM--MPGEDGL 88 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L R +RA +P++ ++ + + G DD + KP + RE+ AR+ A+ RR + Sbjct: 89 SLCRRLRARGETIPIVMLTARGDPLDRIIGLEMGADDYLPKPFNPRELQARIEALIRRQR 148 Query: 121 VSNNR---------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + + GP + R G PL E +L+ L + G+ + + Sbjct: 149 MLGAHTGPLPGDGRIDFGPFSLHLGERRLRRDGGDIPLTSGEFALLQALARHPGRPLGRD 208 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 ++ G D + ++ + +LR+ + + + + LGY + Sbjct: 209 RLIELSRGR-DHEASDRSIDVQVMRLRRAIEDDPAQPRYIQTVWGLGYVL 257 >gi|294501737|ref|YP_003565437.1| two-component response regulator [Bacillus megaterium QM B1551] gi|295707087|ref|YP_003600162.1| two-component response regulator [Bacillus megaterium DSM 319] gi|294351674|gb|ADE72003.1| two-component response regulator [Bacillus megaterium QM B1551] gi|294804746|gb|ADF41812.1| two-component response regulator [Bacillus megaterium DSM 319] Length = 241 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 46/229 (20%), Positives = 94/229 (41%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A + + ++ + +SA+ D+ ++ L + Sbjct: 5 ILIVEDEAQIAKVLKIELEFEDYEVDVEYDGKAGLETATSAQYDLILLDVML--PSLSGI 62 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +R A P+I ++ + + D G +D V KP E+LARV + R Sbjct: 63 EVLRRLRKAEVFTPVILLTARNTTLDKVMGLDQGANDYVTKPFEIEELLARVRSCIRYRS 122 Query: 121 VSNNRAETGPI---------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + + + R+ E L +E ++ YL+ N+ K V + Sbjct: 123 LVEASGTKEAEAELLTISDLTINLETREVLRNNESITLTPKEYDLVVYLLTNKNKIVTRE 182 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I + ++G ++ E NV++ +I LRKK+ + + R +GY + Sbjct: 183 GILTNVWG-YEYEGETNVIDVYIRHLRKKVDEGFSTSLIHTVRGVGYMM 230 >gi|283780370|ref|YP_003371125.1| two component transcriptional regulator, winged helix family [Pirellula staleyi DSM 6068] gi|283438823|gb|ADB17265.1| two component transcriptional regulator, winged helix family [Pirellula staleyi DSM 6068] Length = 236 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 44/223 (19%), Positives = 80/223 (35%), Gaps = 11/223 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++I+D + + G + + + D+ ++ L L+ Sbjct: 7 LVIEDDRSLAEVLSYNLKQAGYEVLTASDGQDGLLQAQLKTPDIVLLDLML--PVIDGLD 64 Query: 63 LPRIIRAHSQVPL---IGISDYPSLQTTLDFFDSGVDDVVNKPIHHR---EILARVAAIY 116 + R +RA S + I ++ L F G DD V KP + E + + Sbjct: 65 VCRRLRADSSMRDLLIIMLTAKAEETDELVGFSLGADDYVAKPFSVKVLLERMKALRRRR 124 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + V G+ L R E R+L+ L+ G+ + ++ A Sbjct: 125 SGEATPEEVTSRLGVTVDRRRHQAMADGKPLQLTRSEFRLLDTLIRQPGRVFHRAELIDA 184 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 G D V E ++ HI LR+KL D +++ R +GY Sbjct: 185 ALGE-DTMVMERTIDVHIRALRRKLGQY--ADVIETVRGVGYR 224 >gi|167590140|ref|ZP_02382528.1| two component heavy metal response transcriptional regulator, winged helix family protein [Burkholderia ubonensis Bu] Length = 227 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 40/221 (18%), Positives = 89/221 (40%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + G ++ + D+ ++ L G+ Sbjct: 3 ILIVEDEPKTGAYLRKGLTEAGYVVDWVEDGITGLHQAETEDYDLLVLDVML--PGQDGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120 L + +R P++ ++ + + + G DD + KP E+ AR+ ++ R Sbjct: 61 TLLQNLRRSKSTPVLFLTAMDDVGDRVKGLELGADDYLAKPFDFVELTARIKSVLRRGQP 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 +N + + R QG+ L +E +L LM G+ + + I S ++ + Sbjct: 121 RESNTLRVADLELDLTRRKATRQGDTILLTAKEFALLWLLMRREGEILPRATIASQVWDM 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + NVV+S I +LR K+ + + + R +GY ++ Sbjct: 181 -NFNSDTNVVDSAIRRLRSKIDDAYEPKLIHTVRGMGYVLE 220 >gi|157412484|ref|YP_001483350.1| two-component response regulator [Prochlorococcus marinus str. MIT 9215] gi|157387059|gb|ABV49764.1| two-component response regulator [Prochlorococcus marinus str. MIT 9215] Length = 263 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 42/229 (18%), Positives = 85/229 (37%), Gaps = 10/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 +LI+D ++D G ++ + L D+ ++ L G + Sbjct: 8 ILLIEDDRDMRDLVARHLEHSGFDVQKAEDGIKGQALALQYSPDLILLDLMLPSVDGLTL 67 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R S +P++ I+ L+ + F+SG DD + KP E+ R+ A+ RR Sbjct: 68 CQRLRRDERTSNIPILMITALGGLKDKVTGFNSGADDYITKPFDLEELHVRIKALLRRTN 127 Query: 121 VSNNRAETGPIRVFS-------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + + + + L E +L L+ G+ V+ I Sbjct: 128 RAQLNSSNQQEILNYGPLTLVPERFEAMWFESPIRLTHLEFELLHCLLQRHGQTVSPALI 187 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 ++G ++ + + HI LR KL + + + GY ++ Sbjct: 188 LKEVWG-YEPDDDIETIRVHIRHLRTKLEPDPRKPVYIKTVYGAGYCLE 235 >gi|284031819|ref|YP_003381750.1| winged helix family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283811112|gb|ADB32951.1| two component transcriptional regulator, winged helix family [Kribbella flavida DSM 17836] Length = 233 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 51/229 (22%), Positives = 96/229 (41%), Gaps = 13/229 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D ++ D+G + + L A D+ ++ L Sbjct: 6 LIVEDDDRIRAVLRLALEDEGYQVAEAGDADTALDLTRKAMPDLMIVDLMLGA--TDGYT 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 R +R S +P++ +S + ++G DD V KP +EI AR+ A+ RRL+ + Sbjct: 64 CIREVRRSSDIPIVVVSARSDTHDIVAGLEAGADDYVTKPFQVKEITARLRALRRRLRTA 123 Query: 123 NNRAETGPIRVFSDGRD---------PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + AE + R + G+ PL E R+L L G+ +++ + Sbjct: 124 ADDAEPDIVLDADPRRSLVLSRARGAARLDGQDVPLTVTEFRLLSELARIPGRVLSRQAL 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 A++ +E +V+ HI +LR K+ + V + R LGY +D Sbjct: 184 LEAVW-EHGFYGDERIVDVHIRRLRTKIERDPGHPAIVVTVRGLGYRLD 231 >gi|229065319|ref|ZP_04200598.1| Two-component response regulator vanRB [Bacillus cereus AH603] gi|228715969|gb|EEL67706.1| Two-component response regulator vanRB [Bacillus cereus AH603] Length = 221 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 49/223 (21%), Positives = 93/223 (41%), Gaps = 9/223 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D +++ ++E + + D+ ++ Sbjct: 6 ILVIEDDQEIQELIKQFLLTQQYTVEVASDGLEGMIQFNKQSFDLILLDVM--MPNLNGF 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119 E+ ++IR+ S VP+I ++ Q + FD G+DD + KP ++ RV A Sbjct: 64 EVAKMIRSQSNVPIIMLTALEEEQDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSND 123 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 K +N +RV D V L +E IL+ L+ N K + + I ++G Sbjct: 124 KSLDNHFVFKELRVDVDAYKVYVNEVEISLTTKEFEILQLLLQNERKVLLRESIVEKVWG 183 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D E ++++HI +RKKL + + + +GY ID Sbjct: 184 -YDYIGESRIIDTHIKNIRKKLDIP----YIKTIKGIGYKIDE 221 >gi|160933134|ref|ZP_02080523.1| hypothetical protein CLOLEP_01977 [Clostridium leptum DSM 753] gi|156868208|gb|EDO61580.1| hypothetical protein CLOLEP_01977 [Clostridium leptum DSM 753] Length = 233 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 47/230 (20%), Positives = 94/230 (40%), Gaps = 11/230 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D +++ + G + NS E + ++ G L Sbjct: 4 ILVVEDEDAIREFVVINLQRAGYDVVEANSGEAALQKYEENHGEFDVAILDIMMPGIDGL 63 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + + +R S +I ++ + G DD V KP E++ARV ++YRR+ Sbjct: 64 TVCKELRKKSGNLGIIMLTAKTQEMDKVTGLMLGADDYVTKPFSPSELVARVDSLYRRVA 123 Query: 121 VSNNRAETGPIRV--------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 ++ R E R + +G + L + E +I+EY +N G + +T Sbjct: 124 IAEMREENNFQEELVSGDFVLNLRNRALKKKGRMIELTQVEFQIMEYFFSNPGVALDRTN 183 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 I + ++G EE +V+ +I +LR K+ + + + LGY + Sbjct: 184 ILTHVWGEA-YYGEEKIVDVNIRRLRMKIEDEPSNPKHIVTVWGLGYKWE 232 >gi|311696245|gb|ADP99118.1| two component transcriptional regulator, winged helix family [marine bacterium HP15] Length = 230 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 45/223 (20%), Positives = 90/223 (40%), Gaps = 9/223 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD A +++ L D+ ++ L G +E Sbjct: 7 LIVDDEAPIREMIAVALEMADYDYLEAADAREAHALIVDKHPDLVLLDWML--PGTSGVE 64 Query: 63 LPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L R ++ + +P+I ++ + + G DD + KP RE++AR+ A+ RR Sbjct: 65 LARRLKKEESTADIPIIMLTAKVEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRRA 124 Query: 120 KVSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + G Q + E R+L++ M ++ + ++Q+ + Sbjct: 125 TPPGVDSPIEVEGLTLDPVGHRVTTQDGALTMGPTEYRLLQFFMTHQERVYTRSQLLDQV 184 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G + VEE V+ HI +LRK L ++ + + R GY Sbjct: 185 WG-GNVYVEERTVDVHIRRLRKALGDQYDH-LIQTVRGTGYRF 225 >gi|304404458|ref|ZP_07386119.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] gi|304346265|gb|EFM12098.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] Length = 232 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 48/230 (20%), Positives = 91/230 (39%), Gaps = 11/230 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + + ++ + S D+ ++ L G + Sbjct: 5 ILVIEDEEGISRVLQLELEHESYTVGVAEDGRKGLEMAQSGEWDLVLLDVML--PGLNGI 62 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +R P+I ++ ++ + F+ G D V KP E+LARV I R Sbjct: 63 EVLRRLRQGGNTVPVILLTARDTVPDKVSGFEHGASDYVTKPFAMEELLARVRNILRIFA 122 Query: 121 VSNNRAETGPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 E + R + L RE +L YL ++ + ++ I Sbjct: 123 QHTKEVEGADLIKVGDLTVELRTRKVFRKELAVDLTPREFELLVYLAEHKNEEKSREDIL 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI-DWN 223 S ++G +D E N+V+ +I LR+KL + + + R +GY + + N Sbjct: 183 SEVWG-YDFIGETNLVDVYIRYLRQKLDKGFRYKLIHTVRGVGYMLKEPN 231 >gi|209523452|ref|ZP_03272007.1| multi-component transcriptional regulator, winged helix family [Arthrospira maxima CS-328] gi|209496194|gb|EDZ96494.1| multi-component transcriptional regulator, winged helix family [Arthrospira maxima CS-328] Length = 628 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 50/225 (22%), Positives = 104/225 (46%), Gaps = 6/225 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + D +A+ ++ N + S+ D+ ++ L + Sbjct: 3 ILLVEDDLHLADALVAMLTSQKYQVDLVNDGQQGWEYIQSSSYDLVLLDIELPL--LDGI 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119 L +R+H+ P++ ++ + Q + D+G DD + KP+ E+ AR+ A + R Sbjct: 61 SLCHQLRSHNFQVPILLLTARNNQQDKVKGLDAGADDYMVKPLDIAELSARIRALLRRSS 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + +++ + + + D G+ L +E +LE LM NR + + +I ++ Sbjct: 121 EATSSVLTYEKMVLDTSTCDVSYNGKPLKLTPKEYGLLELLMGNRQRTFSIDKILDKLW- 179 Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223 FD+ N V +HI LR+KL+ G + +++ LGY ++ N Sbjct: 180 TFDDPPSANTVRAHIKGLRQKLKAAGAGAEFIETVYGLGYRLNQN 224 Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 16/102 (15%), Positives = 38/102 (37%), Gaps = 1/102 (0%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61 +++DD + L G+ + S+ D+ ++ + G ++ Sbjct: 499 MIVDDDPQMLAAIQGLLQPWGIQTITLDDPRQFWKTLESSHPDLLVLDIEMPHLNGIELC 558 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI 103 ++ R +P++ ++ Q F +G DD + KP Sbjct: 559 QIVRNDPRWRGLPVLFVTAQTDRQIREQVFQAGADDYLTKPF 600 >gi|163761277|ref|ZP_02168352.1| phosphate regulon, two-component response regulator protein [Hoeflea phototrophica DFL-43] gi|162281434|gb|EDQ31730.1| phosphate regulon, two-component response regulator protein [Hoeflea phototrophica DFL-43] Length = 229 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 48/225 (21%), Positives = 93/225 (41%), Gaps = 8/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++D + +G ++ + E D+ ++ L G + Sbjct: 7 ITVVEDEEALSVLLQYNLEAEGYEVDAVLRGDEAEIHLQERVPDLLILDWML--PGISGI 64 Query: 62 ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIY 116 EL R +RA + P+I ++ + +G DD V KP E+ R Sbjct: 65 ELCRRLRARPETERLPIIMLTARGEESERVRGLATGADDYVVKPFSTPELLARVRAMLRR 124 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 +V ++ + G I + + + L E R+LE+LM++ G+ ++ Q+ Sbjct: 125 ASPEVISSLLKVGDIELDRETHRVRRRARDIKLGPTEFRLLEFLMSSPGRVYSRAQLLDG 184 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G D V+E V+ H+ +LRK + D + + R GYSI+ Sbjct: 185 VWG-HDVYVDERTVDVHVGRLRKAVNLSGMRDIIRTVRGAGYSIE 228 >gi|186475652|ref|YP_001857122.1| two component transcriptional regulator [Burkholderia phymatum STM815] gi|184192111|gb|ACC70076.1| two component transcriptional regulator, winged helix family [Burkholderia phymatum STM815] Length = 233 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 46/226 (20%), Positives = 84/226 (37%), Gaps = 8/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++I+D + + G + E + L S D+ ++ L G G Sbjct: 5 ILVIEDEPAISELISVNLQHAGHCPIRAYNAEQAQNLISDVLPDLVLLDWMLPGKSGIAF 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 R +P+I ++ Q + + G DD V KP +E++AR+ A+ RR Sbjct: 65 ARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRRRA 124 Query: 121 VSNNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + L E R+L + M + + ++TQ+ Sbjct: 125 PQLTEDVVAINGLKLDPATHRVAAHAQGSEIKLDLGPTEFRLLHFFMTHPERVHSRTQLL 184 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G VEE V+ HI +LR L+ +++ R GY + Sbjct: 185 DQVWGDH-VFVEERTVDVHIKRLRAALKPAGCDAMIETVRGSGYRL 229 >gi|90407312|ref|ZP_01215498.1| hypothetical DNA-binding response regulator OmpR [Psychromonas sp. CNPT3] gi|90311595|gb|EAS39694.1| hypothetical DNA-binding response regulator OmpR [Psychromonas sp. CNPT3] Length = 242 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 46/227 (20%), Positives = 96/227 (42%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ + + + + +A+ D+ ++ L GE L Sbjct: 6 LLIVDDHQEIRELLQRFLKQHQYRVSVAINGQEMKKKLKTAQIDLIILDLML--PGEDGL 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R +RA S +P+I +S + + G DD ++KP + E+LAR+ A+ RR Sbjct: 64 TLCRNLRAQSNIPVIMLSAMGEEMDKIIGLEMGADDYISKPFNPHELLARIKAVLRRSTQ 123 Query: 122 SNNRAETGPIRVF-------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + I F + + QG L E +L+ + + + +++ Q+ Sbjct: 124 ITKQVTDSQILHFERWTLDINRRQLLNHQGINIILSSAEFSLLKVFLEHPQQVLSRDQLL 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 G + V + +++ +S+LRKKL + + + GY + Sbjct: 184 DLAKGR-EGDVYDRAIDTQVSRLRKKLEKDPKQPCLIKTIWGGGYQL 229 >gi|289664195|ref|ZP_06485776.1| two-component system regulatory protein [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289668785|ref|ZP_06489860.1| two-component system regulatory protein [Xanthomonas campestris pv. musacearum NCPPB4381] gi|325918854|ref|ZP_08180934.1| phosphate regulon transcriptional regulatory protein PhoB [Xanthomonas vesicatoria ATCC 35937] gi|325534945|gb|EGD06861.1| phosphate regulon transcriptional regulatory protein PhoB [Xanthomonas vesicatoria ATCC 35937] Length = 229 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 44/222 (19%), Positives = 82/222 (36%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +++DD ++D + + D+ ++ L G G + Sbjct: 5 ILIVDDEPAIRDMVAFALRKGEFEPIHAGDAREAQTAIADRVPDLILLDWMLPGTSGLDL 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118 R + ++P+I ++ + ++GVDD V KP RE+ R R Sbjct: 65 ARRWRKEQLTREIPIIMLTARGEENDRVGGLEAGVDDYVVKPFSARELLARIRAVMRRTR 124 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + G +R+ P+ E R+L + M + + +TQ+ ++ Sbjct: 125 EDDEDGSVAVGRLRIDGAAHRVFAGDAPVPIGPTEYRLLHFFMTHPERVYTRTQLLDHVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G VEE ++ HI +LRK L + V + R GY Sbjct: 185 GGSVY-VEERTIDVHIRRLRKTLEPFGLENMVQTVRGSGYRF 225 >gi|284989870|ref|YP_003408424.1| winged helix family two component transcriptional regulator [Geodermatophilus obscurus DSM 43160] gi|284063115|gb|ADB74053.1| two component transcriptional regulator, winged helix family [Geodermatophilus obscurus DSM 43160] Length = 232 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 51/227 (22%), Positives = 92/227 (40%), Gaps = 12/227 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D +++ + G + S DV ++ L E Sbjct: 7 LVVEDTEEIRELVCTVLRRAGTDVRAVASGAEALAEVRRDAPDVVVLDLGL--PDADGTE 64 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IRA S+ ++ ++ L G D + KP RE++ARV A+ RR +V Sbjct: 65 VCRQIRAESECYVLMLTARAEEVDLLIGLAVGADGYMAKPFSPRELVARVQALLRRPRVP 124 Query: 123 NNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 R+ V D R+ V G V L R E +L L + G+ + + + Sbjct: 125 APRSAPVEESVLRLAELEVDEDSREVRVDGAVVDLTRTEFDLLTALASRPGRVLQRETLL 184 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 ++ D +VE+H+S LR+KL+ + + R +GY + Sbjct: 185 REVW-QTDWEGSVRLVEAHMSNLRRKLQAAGLSSPSIRTVRGVGYRL 230 >gi|196032666|ref|ZP_03100080.1| DNA-binding response regulator [Bacillus cereus W] gi|218903983|ref|YP_002451817.1| DNA-binding response regulator [Bacillus cereus AH820] gi|228927912|ref|ZP_04090957.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228934132|ref|ZP_04096971.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228946472|ref|ZP_04108790.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229122407|ref|ZP_04251620.1| Two component transcriptional regulator, winged helix [Bacillus cereus 95/8201] gi|254722832|ref|ZP_05184620.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|195995417|gb|EDX59371.1| DNA-binding response regulator [Bacillus cereus W] gi|218539029|gb|ACK91427.1| DNA-binding response regulator [Bacillus cereus AH820] gi|228660968|gb|EEL16595.1| Two component transcriptional regulator, winged helix [Bacillus cereus 95/8201] gi|228813220|gb|EEM59523.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228825300|gb|EEM71094.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228831602|gb|EEM77194.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 215 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 38/220 (17%), Positives = 95/220 (43%), Gaps = 11/220 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++ DD + A F +G + E + + D++ ++ + Sbjct: 4 LIADDEQDMLRILKAYFEKEGFEVFLAKDGEEALQIFYDEKIDLAILDWM--MPKHSGIT 61 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + I+ +S V ++ ++ + L SG D+ V KP H ++ R ++L Sbjct: 62 VCQEIKKNSSVKVLMLTAKSESEDELAALQSGADEYVKKPFHPGVLITRA----KKLIQH 117 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 ++ + +++ + + + E +++ + ++G + + ++ ++G FD Sbjct: 118 DDVIQVQDLKIDFTKNKVYKNDKELDITKTELELIKCFLNHKGMILTRKKLLDIVWG-FD 176 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 EE V++H+ +LRKK+ + + + R LGYS++ Sbjct: 177 YFGEERTVDTHVRRLRKKIGE----NIIKTHRGLGYSLEE 212 >gi|163858914|ref|YP_001633212.1| two-component response regulator [Bordetella petrii DSM 12804] gi|163262642|emb|CAP44945.1| two-component response regulator [Bordetella petrii] Length = 224 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 35/222 (15%), Positives = 91/222 (40%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + + ++ ++ D+ ++ L G Sbjct: 3 ILVIEDERKLAHYLQKGLTEHNYVVDIASNGVDGRHAALEGNYDLVVLDVML--PGIDGF 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120 + + +R P++ ++ ++ + ++G DD + KP E+LAR+ A+ R Sbjct: 61 WILKDLRETKDTPVLMLTARDKVEDRVRGLENGADDYLVKPFAFSELLARIQALLRRGRG 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + G + + R G L +E +L L+ +G+ +++T + ++ + Sbjct: 121 QESTLLKLGDLELDLARRKAHRAGMRLDLTAKEFTLLALLLRRQGQVLSRTMLAEQVWDM 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + + N +E + +LR K+ + + + R +GY ++ Sbjct: 181 -NFDSDTNAIEVAVRRLRAKIDDPFDRRLLHTVRGMGYVLEE 221 >gi|307330420|ref|ZP_07609564.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] gi|306883937|gb|EFN14979.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] Length = 230 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 46/234 (19%), Positives = 94/234 (40%), Gaps = 23/234 (9%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 + ++D ++++ DG + + R D++ ++ + G + Sbjct: 2 LFVEDDDVIREATQLALERDGFLVTAAPDGLTGLERFRADRPDIALLDVMV--PGLDGVS 59 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R IR S VP+I +S + ++G DD V KP ++AR+ A+ RR + Sbjct: 60 LCRRIRDESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRRFGHA 119 Query: 123 NNRA----------------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166 + G + + +G + G L E R+L A G Sbjct: 120 SGPGGRGAEPVPEEPDGGVLCFGDLEIDPEGMEVRKGGRQVALTPTEMRLLLEFSAAPGT 179 Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +++ ++ ++ + + VV+ H+ +LR K+ G D +++ R GY + Sbjct: 180 VLSRDRLLERVW-EYGWGGDTRVVDVHVQRLRGKI----GQDRIETVRGFGYKL 228 >gi|317056826|ref|YP_004105293.1| winged helix family two component transcriptional regulator [Ruminococcus albus 7] gi|315449095|gb|ADU22659.1| two component transcriptional regulator, winged helix family [Ruminococcus albus 7] Length = 227 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 46/221 (20%), Positives = 86/221 (38%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++D + L G + L + R D+ ++ L K Sbjct: 5 IAVVEDDREISSILKELLESSGYECVQAFDGDEASRLLKNERFDMVLMDLMLPYK--NGE 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119 L +R+ S+ P+I IS ++T LD G DD + KP E+ V Sbjct: 63 RLIGELRSRSETPVIVISAKSMMETKLDVLRLGADDYIIKPFDIDEVLVRIEVVLRRSGA 122 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + E G + + ++ G L +E +L+ M + K K +++ ++ Sbjct: 123 FAARPVLEVGDLSMNTEENTVSANGGQVQLTAKEFMLLKLFMEHPQKVYTKAELYETVWN 182 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 E+N + H+S LR KL+ G D +++ +GY + Sbjct: 183 EV-YYYEDNTINVHVSNLRSKLKKVSGKDHIETVWGIGYRL 222 >gi|300868611|ref|ZP_07113225.1| two component transcriptional regulator [Oscillatoria sp. PCC 6506] gi|300333370|emb|CBN58417.1| two component transcriptional regulator [Oscillatoria sp. PCC 6506] Length = 245 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 90/228 (39%), Gaps = 9/228 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++IDD + + G + + L D+ ++ L G V Sbjct: 5 ILVIDDDPTIAELVAVNLEMAGYEVTQAEDGIKGQALAIQMLPDLIMLDLMLPRVDGFTV 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R + +P++ ++ Q ++ F+SG DD + KP E+LARV A+ RR Sbjct: 65 CQRLRRDDRTADIPVLMLTALGQTQDKVEGFNSGADDYLTKPFELEEMLARVRALLRRTD 124 Query: 121 VSNNRAETGPIRVF------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 A+ I + + + ++ L E +L L+ G+ V+ ++I Sbjct: 125 RIPQAAKHAEILSYGPLTLVPERFEAIWYAQIVKLTHLEFELLHCLLQRHGQTVSPSEIL 184 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 ++G +D + + HI LR K+ + + + GY ++ Sbjct: 185 KEVWG-YDPDDDIETIRVHIRHLRTKMEPDPRHPRFIKTVYGAGYCLE 231 >gi|295133762|ref|YP_003584438.1| two component transcriptional regulator winged helix family protein [Zunongwangia profunda SM-A87] gi|294981777|gb|ADF52242.1| two component transcriptional regulator, winged helix family protein [Zunongwangia profunda SM-A87] Length = 222 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 41/218 (18%), Positives = 99/218 (45%), Gaps = 4/218 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + ++ +++ ++ + L + + D+ ++ L G + Sbjct: 3 ILIVEDETGISGFLKQGLEEESFAVDIADNGKKGLELALTGKYDLLLLDWML--PGLSGI 60 Query: 62 ELPRI-IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R + + P++ ++ ++ T+ SG +D + KP H E+L R+ R Sbjct: 61 EICRQFRKEDKETPVLFLTAKDTVDETIFGLQSGANDYIKKPFHFEELLERIKVQLRPKS 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + GPI + + G+ L +E +LEYL+ N+ + +T+I ++ + Sbjct: 121 GEHAIFSLGPIELNTGTHQAFKNGKEVNLTLKEFALLEYLIRNKERVCTRTKIIEKVWDI 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + + V++ +I+ LR+KL + + + R +GY Sbjct: 181 -NFSYNTGVIDVYINALRRKLDLDQDENYIQTVRGVGY 217 >gi|229179439|ref|ZP_04306792.1| Two-component response regulator [Bacillus cereus 172560W] gi|228603940|gb|EEK61408.1| Two-component response regulator [Bacillus cereus 172560W] Length = 229 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 45/225 (20%), Positives = 91/225 (40%), Gaps = 10/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ ++G + + + D+ ++ L + Sbjct: 7 ILIVDDDIEIRKIVSIYLKNEGYEIIDASDAIEALETLRNTTIDLIILDIML--PKMDGI 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILA------RVAAI 115 E IR Q+P+I +S + SG +D + KP + E++A R + Sbjct: 65 EACLKIREQYQMPIIFLSAKDEDIDKIQGLMSGAEDYITKPFNPLELMARIKSQLRRYRV 124 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 Y+ +V E G ++V R ++ E L +E IL L+ N+GK + +I+ Sbjct: 125 YQTEEVKQFIHEIGHLKVDEKTRQVFIRNEEVRLTPKEFDILSLLVRNKGKVFSVEKIYE 184 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYS 219 ++ +N V HI+K+R+K+ + + +GY Sbjct: 185 MVW-EDSFYKSDNTVMVHITKIREKIEENPRQPVYLKTVWGVGYR 228 >gi|150018483|ref|YP_001310737.1| two component transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149904948|gb|ABR35781.1| two component transcriptional regulator, winged helix family [Clostridium beijerinckii NCIMB 8052] Length = 229 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 41/229 (17%), Positives = 89/229 (38%), Gaps = 11/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ ++G ++ + E + + ++ L Sbjct: 4 ILVVDDEKEIRNLLEINLRNEGYNVFKASCGEEALDILEKEEIHLIVLDIM--MPHMDGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-------REILARVAA 114 E+ R +R +P++ +S + +G DD V KP + + ++ R Sbjct: 62 EVCRRVREKYNIPILMLSAKSEDMDKIQGIMTGADDYVCKPFNQLELIVRVKALMRRSYF 121 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + +++VS + + + + + L RE IL L NRG + +IF Sbjct: 122 LNLKMQVSEDLIRIESMVIDKSKHKVTIDDKEVDLTAREFEILYLLATNRGIVFSAEEIF 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222 ++ N V H+S+LR K+ + G + + +GY I+ Sbjct: 182 EKVWKER-YYQSNNTVMVHMSRLRDKIEHHMEGNKIIHTIWGVGYKIEK 229 >gi|271499217|ref|YP_003332242.1| winged helix family two component transcriptional regulator [Dickeya dadantii Ech586] gi|270342772|gb|ACZ75537.1| two component transcriptional regulator, winged helix family [Dickeya dadantii Ech586] Length = 240 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 43/231 (18%), Positives = 88/231 (38%), Gaps = 12/231 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + D+G + + D ++ L G L Sbjct: 7 ILLVEDDHDIATLLRLNLQDEGYQISHEVNGAHALVQLEKQVWDAVILDLML--PGVDGL 64 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARVA 113 E+ R IR + P+I IS S + + G DD + KP + + R Sbjct: 65 EICRRIRQMTHYLPVIIISARTSETHRVLGLEMGADDYLPKPFSVLELVARVKALFRRQE 124 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 A+ + +++ + + R+ + G+ L RE +L + + G+ ++ + Sbjct: 125 AMGQNIRMEAGSVSLHGLDIDPLAREVSLHGKPIELTPREFDLLYWFARHPGEVFSRLTL 184 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223 ++G + E+ V +HI++LR K+ N + + + GY N Sbjct: 185 LDRVWG-YQHEGYEHTVNTHINRLRIKIERNPAEPEIILTVWGKGYKFATN 234 >gi|237734082|ref|ZP_04564563.1| DNA-binding response regulator [Mollicutes bacterium D7] gi|229382908|gb|EEO32999.1| DNA-binding response regulator [Coprobacillus sp. D7] Length = 236 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 47/234 (20%), Positives = 88/234 (37%), Gaps = 17/234 (7%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + G ++ N+ + + R D+ ++ + Sbjct: 6 ILVVEDEIEIAKAIEIYLKSQGYNVYIANNGKAGLEMV--ERYDIHLAIVDIMMPVMDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ IR + P+I +S + + G DD V KP E+LARV++ RR Sbjct: 64 EMTMKIRENYDFPIIFLSAKSEDIDKITGLNIGGDDYVTKPFVPMELLARVSSQLRRYHK 123 Query: 122 SNNRAETGPIRV------------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 N D ++ V G+ + E +ILE LM G+ + Sbjct: 124 YLNMIGKIQEDQAANKYVVGGLELDLDTKEVSVDGKAVKVTPIELKILELLMEKPGRVFS 183 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 QI+ ++ + A+ V H+ LR+K+ N + +GY I+ Sbjct: 184 SEQIYENVW--HEAAINTETVMVHVRNLREKIEINPSNPQYLKVVWGVGYKIEK 235 >gi|145594981|ref|YP_001159278.1| response regulator receiver [Salinispora tropica CNB-440] gi|145304318|gb|ABP54900.1| response regulator receiver [Salinispora tropica CNB-440] Length = 334 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 49/223 (21%), Positives = 90/223 (40%), Gaps = 9/223 (4%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + +L++D +++ D G + + + D+ ++ L Sbjct: 108 LILLVEDDSIITAALSRALTDAGHVVRAVGQAAEALRVLTGEPPDLVLLDLGL--PDIDG 165 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAI 115 + R+IR+ S+VP++ I+ S + +SG DD V KP ILAR Sbjct: 166 TDTLRMIRSISEVPVVVITARRSETDIIHLLNSGADDYVTKPFSGEHILARISAVLRRYR 225 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + GP+ + R + G L RRE +L YL G+ V++ ++ + Sbjct: 226 SGTDREGPGAITVGPLVIGRKERRVTMHGNPLKLTRREYDVLTYLAERVGQVVSRRELMT 285 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLG 217 ++ EE ++ HIS LR+KL + + R +G Sbjct: 286 EVW-RQARIGEEQTIDVHISWLRRKLGETAAKPRLLHTVRGVG 327 >gi|331085996|ref|ZP_08335079.1| hypothetical protein HMPREF0987_01382 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330406919|gb|EGG86424.1| hypothetical protein HMPREF0987_01382 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 224 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 46/221 (20%), Positives = 95/221 (42%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ +D + + S++ E + A DV ++ + L Sbjct: 3 ILIAEDERDLNKILAQRLMAEHYSVDSCMDGEAALDYLAGAEYDVVILDIM--MPKKDGL 60 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R IR + VP++ ++ S++ + D+G +D + KP E+LAR+ + RR + Sbjct: 61 SVLREIRQKNKHVPVLLLTAKDSVEDRVRGLDAGANDYLVKPFAFEELLARIRVLLRRPE 120 Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S + V D G+ L +E +L Y++ N+G +++ ++ ++ Sbjct: 121 KSEDSCYREGGLEVHVDTHQVFRDGKEIQLSGKEFALLRYMIQNKGIVLSREKLEQHLW- 179 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D A NV++ +I LRKK+ + + R GY + Sbjct: 180 NYDYAGGSNVIDVYIRYLRKKIDESFKEKLIHTVRGAGYVL 220 >gi|153939612|ref|YP_001390321.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|152935508|gb|ABS41006.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|295318412|gb|ADF98789.1| DNA-binding response regulator [Clostridium botulinum F str. 230613] Length = 240 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 43/227 (18%), Positives = 92/227 (40%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 ++IDD + + +G + +LE + D+ ++ L + Sbjct: 11 ILIIDDEEDIVRLIRTVLKKEGFQNIYYATNLEDGFKEFNKVEPDIVILDIML--PDGEG 68 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI------HHREILARVAA 114 EL + IR+ S+VP++ +S + F G DD + KP + + R + Sbjct: 69 YELCKTIRSKSKVPILFLSAKGEEIDKILGFAIGGDDYITKPFSTKELAYRVKAHLRRYS 128 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + N GP + + + GE+ L +E ++ + + + ++K +I Sbjct: 129 YVENVNEEKNILSFGPFELNISKAEFKKDGEIIELKPKELALISFFAKHPNQIISKEKIC 188 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++G D +N + HI +LR+K+ + + + + LGY + Sbjct: 189 DNVWGE-DYYGFDNTIMVHIRRLREKIEKEPSKPEYLINVKGLGYKL 234 >gi|170736487|ref|YP_001777747.1| two component heavy metal response transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|169818675|gb|ACA93257.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia cenocepacia MC0-3] Length = 223 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 42/221 (19%), Positives = 94/221 (42%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + +++ + + +L D+ ++ L Sbjct: 3 ILIVEDEPKMASYLRKGLTEASYTVDVAENGQDGLFLALHEDFDLIVLDVMLPA--LDGF 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +RA Q P++ ++ +++ + + G DD + KP + E LAR+ ++ RR Sbjct: 61 EVLRRLRAQKQTPVLLLTAREAIEDKVAGLELGADDYLLKPFAYAEFLARIRSLLRRAPR 120 Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + R L +E +L+ L G+ + +T I S I+ + Sbjct: 121 NVRDILHVADLEIDLLKRRVRRADTRIDLTAQEFALLQLLAEREGEVLTRTFITSQIWDM 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + NVV++ I +LR K+ N + + R +GY ++ Sbjct: 181 -NFDSDTNVVDAAIKRLRAKIDNAYEKKLIHTIRGMGYVLE 220 >gi|221066120|ref|ZP_03542225.1| two component transcriptional regulator PhoB, winged helix family [Comamonas testosteroni KF-1] gi|264679333|ref|YP_003279240.1| two component transcriptional regulator, winged [Comamonas testosteroni CNB-2] gi|299532292|ref|ZP_07045685.1| two component transcriptional regulator, winged [Comamonas testosteroni S44] gi|220711143|gb|EED66511.1| two component transcriptional regulator PhoB, winged helix family [Comamonas testosteroni KF-1] gi|262209846|gb|ACY33944.1| two component transcriptional regulator, winged [Comamonas testosteroni CNB-2] gi|298719700|gb|EFI60664.1| two component transcriptional regulator, winged [Comamonas testosteroni S44] Length = 231 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 43/225 (19%), Positives = 90/225 (40%), Gaps = 10/225 (4%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 M ++++D + + +G + + DV ++ L G Sbjct: 6 MVLIVEDEPAIAELIAVNLRHNGFQPVWAEDGVSAQRELDAVLPDVILLDWML--PGASG 63 Query: 61 LELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAI 115 L L R RA S+ P++ ++ + D+G DD + KP +E+ R Sbjct: 64 LSLARKWRADSRTKAVPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIRAVLR 123 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 R + ++ G + + + QG++ + E ++L YLM + + ++ Q+ Sbjct: 124 RRAPEQVQDKVSIGELVLDAAAHRVSWQGDLLKIGPTEFKLLNYLMKHPERVHSRAQLLD 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G +EE V+ H+ +LR+ L +++ R GY Sbjct: 184 KVWGDH-VFIEERTVDVHVKRLRESLGVAG--VLIETVRGAGYRF 225 >gi|148550486|ref|YP_001270588.1| two component transcriptional regulator [Pseudomonas putida F1] gi|148514544|gb|ABQ81404.1| two component transcriptional regulator, winged helix family [Pseudomonas putida F1] Length = 240 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 48/229 (20%), Positives = 89/229 (38%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++DD +++ +G L L D+ ++ GE L Sbjct: 7 IAIVDDYPDIRELVAQYLTQEGYRLTVVADGNELRALLDRDVPDLIILDVM--MPGEDGL 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R IR+ S P++ +S + + G DD + KP + RE+LARV A+ RR Sbjct: 65 SLCRHIRSRSNTPVLFLSARTEDLDVILGLEMGGDDYLKKPFNPRELLARVKALLRRATP 124 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF---------PLPRRERRILEYLMANRGKRVAKTQ 172 ++ A + G L E R+L L+ G+ V + + Sbjct: 125 ASEGASSLLEGSIRFGEWVLNCKLRELLGADGVSVSLSGTEFRLLAALLEKPGEIVTRDE 184 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + + + G E + +++ IS+LR+K+ + + + GY+ Sbjct: 185 LLNKVSGRASEPFD-RSIDNQISRLRRKIEPDPKNPIYIRTHWGGGYAF 232 >gi|124266822|ref|YP_001020826.1| two-component response regulator [Methylibium petroleiphilum PM1] gi|124259597|gb|ABM94591.1| two-component response regulator [Methylibium petroleiphilum PM1] Length = 228 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 40/226 (17%), Positives = 87/226 (38%), Gaps = 8/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + + G ++ + L D+ +++ L G L Sbjct: 3 LLVVEDEVKLAEYLRKGLTESGYVVDVAHDGIDGLHLAMEGNYDLLVLDSML--PGIDGL 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-----IY 116 L +R P++ ++ + + G DD + KP E+ AR+ Sbjct: 61 ALLAALRRSKHTPVLMLTARVHVDDRVRGLQGGADDYLTKPFAFTELTARIQVLLRRAAP 120 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + V R G+ L +E +L LM +G+ +++T++ + Sbjct: 121 SQSASEPTLLRIADLEVDLLRRKAVRAGQRLDLTAKEFSLLALLMRRQGEVLSRTELAAQ 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 ++ + + E NVVE I +LR K + + R +GY ++ Sbjct: 181 VWDM-NYDSETNVVEVAIRRLRNKFDAPFEQVLLHTVRGMGYVLEE 225 >gi|330813170|ref|YP_004357409.1| phosphate regulon transcriptional regulatory protein PhoB (SphR) [Candidatus Pelagibacter sp. IMCC9063] gi|327486265|gb|AEA80670.1| phosphate regulon transcriptional regulatory protein PhoB (SphR) [Candidatus Pelagibacter sp. IMCC9063] Length = 228 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 39/223 (17%), Positives = 88/223 (39%), Gaps = 4/223 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 +++D + + + N+ E D+ ++ L G ++ Sbjct: 5 IFIVEDEPSIATLVKYNLEKENYKVFISNNGEEGLKEIKKIEPDLILLDWMLPDLSGIEI 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118 + + +P+I ++ + + ++G DD + KP H E++AR+ A + Sbjct: 65 CRSLKKDKKFKFIPIIMLTAKGQEEDKVLGLNTGADDYLVKPFSHSELVARINALLRRVK 124 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + ++V + + L E R++ + + N + ++ Q+ ++ Sbjct: 125 PQAIEDSVTFEDLKVDRLQKRVSRGSQQIILGPTEYRLINFFITNPRRVFSREQLLENVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 L VE V+ HI +LRK + D + + R GYS+D Sbjct: 185 -LNSINVELRTVDVHIRRLRKAINLPGKKDLIRTVRSTGYSLD 226 >gi|309776080|ref|ZP_07671071.1| regulatory protein VanR [Erysipelotrichaceae bacterium 3_1_53] gi|308916031|gb|EFP61780.1| regulatory protein VanR [Erysipelotrichaceae bacterium 3_1_53] Length = 229 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 34/225 (15%), Positives = 77/225 (34%), Gaps = 8/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + ++ ++ + D++ ++ L Sbjct: 3 ILVVDDEQEIAGLVEIYLKNENYDVDVCYTGTQALQNIQKHTYDLAILDVML--PDMDGF 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAIY 116 + + IR P+I ++ + G DD + KP R Sbjct: 61 TICKTIRQKHTWPIIMLTAKEQDIDKITGLMIGADDYMTKPFQPLELVARVKAQLRRYKR 120 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 ++ + + D + + L E RIL YL +GK V+ ++++A Sbjct: 121 YNVQQKAQELSYLGLVMNRDLHICRLNEKDVFLTPIEFRILWYLCERQGKVVSAKELYTA 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 I+ N + HI +R+K+ ++ + + +GY + Sbjct: 181 IWQEEYLTSSNNTLMVHIRHIREKMHDRGEHPRYIQNVWGVGYKL 225 >gi|75908138|ref|YP_322434.1| two component transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75701863|gb|ABA21539.1| two component transcriptional regulator, winged helix family [Anabaena variabilis ATCC 29413] Length = 238 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 40/225 (17%), Positives = 87/225 (38%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V++ +E + L + ++ L Sbjct: 11 ILVVDDDFGVRNLIYRFLSRK-YQIESAADGKTALSLFEQFNPALVILDWNL--PDTSGY 67 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI----HHREILARVAAIYR 117 L + +++ + V ++ ++ + +G DD + KP + A + I Sbjct: 68 SLCQEMQSRNNVLVMILTGRTEEADKIKILAAGADDFITKPFSLAEIEVRVQALLRRIRS 127 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + R + + +GR+ + + L E IL +L ++ G+ ++ Q+ I Sbjct: 128 IKPSPSQRLIFKQLAINPEGREVTLNDKPLNLTALEFNILHFLASHPGQAWSRPQLIQKI 187 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221 +G D + VV+ HI +LRKKL + + + + R GY + Sbjct: 188 WGC-DYVGDGRVVDVHIGQLRKKLESDTSIPEFIKTVRGYGYKFE 231 >gi|186685384|ref|YP_001868580.1| two component transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186467836|gb|ACC83637.1| two component transcriptional regulator, winged helix family [Nostoc punctiforme PCC 73102] Length = 227 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 53/220 (24%), Positives = 98/220 (44%), Gaps = 5/220 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 + ++D A + + A + G ++ ++ + DV ++ + G+ L Sbjct: 4 LFVEDEAKIANFVRAGLKEQGFVVDYCDNGDEGYLRALENEYDVLILDIMV--PGKDGLS 61 Query: 63 LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-AIYRRLK 120 + +++R P+I ++ L L + G DD + KP E+ AR+ + R + Sbjct: 62 ILKLLRGQGRNAPVILLTARNELDDRLAGLNLGADDYIAKPFFVEELAARIHAVVRRSVS 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 N GPIR+ R+ + L RE +LEYLM + G+ +TQI ++G Sbjct: 122 NRQNILSVGPIRLDRITREVTCDRQAIELTSREFNLLEYLMRSPGRVFTRTQILEHVWG- 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D NVV+ I ++RKK+ ++S R +GY Sbjct: 181 YDFNPNTNVVDVCIQRIRKKIDPIDEPVWIESIRGVGYRF 220 >gi|313672108|ref|YP_004050219.1| two component transcriptional regulator, winged helix family [Calditerrivibrio nitroreducens DSM 19672] gi|312938864|gb|ADR18056.1| two component transcriptional regulator, winged helix family [Calditerrivibrio nitroreducens DSM 19672] Length = 222 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 44/221 (19%), Positives = 102/221 (46%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + F ++G +++ E + + D ++ L L Sbjct: 3 ILIVEDEKTLANLIKKGFEEEGFAVDIAYDGEDGLFFAQNYSYDCIVLDIML--PVIDGL 60 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-ILARVAAIYRRL 119 + + +R ++ P+I ++ +++ + DSG DD + KP E + A I R+ Sbjct: 61 TILKKLRKQNNTTPVIMLTAKDTVKDKVLGLDSGSDDYLTKPFSFEELLSRTKAVIRRKY 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++S+ + + + + + + + L +E +LEYL AN+ K +++T I IY Sbjct: 121 EISSPIIKVDNLEIDTAKKTVKRANQPIELSAKEYALLEYLAANKNKVLSRTMIIEHIYN 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + NV++ I+++R K+ V + R +GY++ Sbjct: 181 E-EFDFDSNVIDVFINRIRNKIDKNFDKKLVHTIRGMGYAL 220 >gi|307329401|ref|ZP_07608563.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] gi|306884935|gb|EFN15959.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] Length = 225 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 46/221 (20%), Positives = 91/221 (41%), Gaps = 5/221 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + +G ++ + E L V ++ L G + Sbjct: 4 LVVEDEQNIALAVDRGLRAEGFGVDIAENGEKALGLIRHNDYAVIVLDLML--PGRNGYD 61 Query: 63 LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120 + R +RA P++ ++ D D G DD + KP +LAR+ A + R Sbjct: 62 VCRTLRAAGIATPVLILTAKDGEYDEADALDLGADDYLTKPFSFVVLLARIRALLRRSAP 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + G + + E L RE +LE+L+ + V+KT + + ++ Sbjct: 122 QRSPVLRAGDLWLDPAAHRCGRGDERLDLTPREFGLLEFLLRHPDTVVSKTDLLAQVWDA 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + N+VE ++ LR+K+ G +D+ R +GY +D Sbjct: 182 W-FEGDPNIVEVYVGYLRRKIDIPFGRSAIDTVRGVGYRLD 221 >gi|291302356|ref|YP_003513634.1| winged helix family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290571576|gb|ADD44541.1| two component transcriptional regulator, winged helix family [Stackebrandtia nassauensis DSM 44728] Length = 221 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 49/223 (21%), Positives = 91/223 (40%), Gaps = 11/223 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + G + ++ + D+ ++ L Sbjct: 4 ILIIEDSERITAFLTKGLAAAGFTPSVAHTGAEGLGRALTGEVDLIVLDIGL--PDMDGF 61 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +L R +RA + P+I ++ S + G DD + KP E+LAR+ R + Sbjct: 62 DLLRALRAAGRDTPVIILTARDSATDRVTGLSDGADDYMPKPFSVDELLARIRLRLRPVS 121 Query: 121 VSNNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + R G L RE +L+ LM N G+ +++ Q+ S + Sbjct: 122 GGGSDQAVLRVGDLELDLRTRAVRAGGRQVELTARELSLLDTLMRNAGQVLSREQLLSRV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G FD NVV+ ++ LR+K+ G D +++ R LGY + Sbjct: 182 WG-FDFDPGSNVVDVYVRYLRRKI----GADRIETVRGLGYRL 219 >gi|107027025|ref|YP_624536.1| two component heavy metal response transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116691778|ref|YP_837311.1| two component heavy metal response transcriptional regulator [Burkholderia cenocepacia HI2424] gi|105896399|gb|ABF79563.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia cenocepacia AU 1054] gi|116649778|gb|ABK10418.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia cenocepacia HI2424] Length = 228 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 41/221 (18%), Positives = 90/221 (40%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + G ++ + + D+ ++ L G+ Sbjct: 4 ILIVEDEPKTGAYLRKGLTEAGYVVDWVEDGITGQHQAETEEYDLLVLDVML--PGQDGW 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120 L + +R P++ ++ + + + G DD + KP E+ AR+ +I R Sbjct: 62 TLLQNLRRSKSTPVLFLTARDDVGDRVKGLELGADDYLAKPFDFVELTARIKSILRRGQP 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 +N + + R QG+ L +E +L LM G+ + + I S ++ + Sbjct: 122 RDSNTLRVADLELDLTRRKATRQGDTILLTAKEFALLWLLMRREGEILPRATIASQVWDM 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + NVV+S I +LR K+ + + + R +GY ++ Sbjct: 182 -NFNSDTNVVDSAIRRLRSKIDDAYEPKLIHTVRGMGYVLE 221 >gi|110346937|ref|YP_665755.1| two component transcriptional regulator [Mesorhizobium sp. BNC1] gi|110283048|gb|ABG61108.1| two component transcriptional regulator, winged helix family [Chelativorans sp. BNC1] Length = 242 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 42/229 (18%), Positives = 87/229 (37%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++D L +G + + D+ ++ L GE L Sbjct: 10 ILVVDDHQDIRDLVAGLLAKEGYRVSAAADGRQMRRQLIESSVDLVVLDLML--PGEDGL 67 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R +RA + +P++ ++ + + G DD + KP RE++AR+ A+ RR + Sbjct: 68 TLCRDLRASTNIPVVMLTAKGDEFDRVLGLEMGADDYLTKPFGGRELVARIRAVLRRTRS 127 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF---------PLPRRERRILEYLMANRGKRVAKTQ 172 + ++ GR L E +L+ + + + Q Sbjct: 128 VPPGTRSQIACLWRFGRWTFDTATRSLKSTDDALLSLSTAEFNLLKVFVERPQIVLTRDQ 187 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 + G E ++ +++ IS+LR+K+ + + GY Sbjct: 188 LLDLTRGRESEFID-RSIDTRISRLRRKIEEDPQNPQILKTVWGDGYVF 235 >gi|315499320|ref|YP_004088124.1| two component transcriptional regulator phob, winged helix family [Asticcacaulis excentricus CB 48] gi|315417332|gb|ADU13973.1| two component transcriptional regulator PhoB, winged helix family [Asticcacaulis excentricus CB 48] Length = 231 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 51/223 (22%), Positives = 97/223 (43%), Gaps = 4/223 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++ +D + +G + + + + + D+ + + G +V Sbjct: 7 IIIAEDEDALSTLLQYNLEKEGYEVGVAIDGDEALMMINERQPDLLVCDWMMPKVSGIEV 66 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 R +P++ ++ + D+G DD V KP E++AR+ A+ RR++ Sbjct: 67 TRRLRAQTETRNLPIVMLTARSEETDRIRGLDTGADDYVIKPFSMVELVARIRAVLRRIR 126 Query: 121 V--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 S +R G I + + G L E ++L+YLM + + ++ Q+ A++ Sbjct: 127 PGLSEDRVTFGEIVIDRLSHRVQRSGRDVHLGPTEYKLLDYLMQHPKRVFSREQLLDAVW 186 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 G D VE V+ HI +LRK L +DP+ + R GYS+D Sbjct: 187 GN-DVYVEARTVDVHIGRLRKALNADTDYDPIRTVRSAGYSLD 228 >gi|113867801|ref|YP_726290.1| response regulator [Ralstonia eutropha H16] gi|113526577|emb|CAJ92922.1| response regulator, OmpR-family [Ralstonia eutropha H16] Length = 232 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 43/227 (18%), Positives = 92/227 (40%), Gaps = 12/227 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++I+D A + + ++ N S D+ ++ L G LE Sbjct: 6 LVIEDDADIAELVRLQVSGLSCDVKVINHGRAGLEEALSRPYDLVILDLML--PGADGLE 63 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARVAA 114 + R +RA + P++ ++ + + + G DD + KP + I V Sbjct: 64 ICRRLRAEPRYTPILMLTARSTELDRVLGLEMGADDYLTKPFSVLELTARVKAIFRLVDT 123 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + + + D R+ V+G L +E ++L Y +N G+ ++ Q+ Sbjct: 124 LANPPSDGPRTVQVKALHIDIDKREVSVRGTPICLTAKEFQLLLYFASNPGRVFSRAQLL 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++G + + E+ V SHI++LR K+ + + + + +GY Sbjct: 184 DQVWG-YSHSGYEHTVSSHINRLRAKIELDPNEPEYIQTVWGVGYKF 229 >gi|290954874|ref|YP_003486056.1| two-component system response regulator [Streptomyces scabiei 87.22] gi|260644400|emb|CBG67485.1| putative two-component system response regulator [Streptomyces scabiei 87.22] Length = 229 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 47/222 (21%), Positives = 86/222 (38%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + D + D G +++ W+ R D ++ L G Sbjct: 9 LLLVEDELRLADVIKSGLVDKGFAVDVVGDGSEAVWMAGEHRYDAIVLDVML--PGLNGF 66 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R +R P++ ++ + DSG DD + KP +LAR+ A+ RR Sbjct: 67 AVCRKLRESGNWTPIMMLTAMDGELDEVQSLDSGADDYLAKPFSFAVLLARLRALVRRGA 126 Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +V G L +E +L L G+ V KT++ + Sbjct: 127 QERPAVIEVGDLQVDPAAACARRGGVHIALTPKEFAVLHLLARRAGQVVTKTELLQHAWD 186 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 F + N+VE ++S LR+K+ + + R GY ++ Sbjct: 187 -FAFEGDPNIVEVYVSALRRKIDAPFAVRTLTTVRGSGYLLE 227 >gi|228991673|ref|ZP_04151613.1| Two component transcriptional regulator, winged helix [Bacillus pseudomycoides DSM 12442] gi|228767996|gb|EEM16619.1| Two component transcriptional regulator, winged helix [Bacillus pseudomycoides DSM 12442] Length = 215 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 39/219 (17%), Positives = 94/219 (42%), Gaps = 11/219 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++ DD + A F +G + E + + D++ ++ + Sbjct: 4 LIADDEQDMLKILKAYFEKEGFQVLLAKDGEEALEIFYEVKIDLAILDWM--MPKRNGIT 61 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + I+ +S V ++ ++ + L SG D+ V KP H +L R ++L Sbjct: 62 VCQEIKKNSSVKVLMLTAKSENEDELVALQSGADEYVKKPFHPGILLTRA----KKLLNQ 117 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 + + +++ + + + E +++ + ++G + + ++ ++G FD Sbjct: 118 DEVIQVQNLKIDLIKNKVYKSDKELEITKTELELIKCFLNHKGTILTREKLLDIVWG-FD 176 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +E V++H+ +LRKK+ D + + R LGYS++ Sbjct: 177 YFGDERTVDTHVRRLRKKIGE----DIIKTHRGLGYSLE 211 >gi|226311027|ref|YP_002770921.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226093975|dbj|BAH42417.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 232 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 41/226 (18%), Positives = 92/226 (40%), Gaps = 11/226 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + +G+ + ++ DV ++ L + Sbjct: 5 LIVDDEEDIVRLLKTVLIKEGIENVYTASTAAEGFGQFQDKHPDVVILDIML--PDGEGY 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------AI 115 ++ + IR+ S VP++ +S L G DD + KP +E+ RV Sbjct: 63 DVCKKIRSISHVPILFLSAKTEEVDKLVGLAIGGDDYIGKPFSPKEVAYRVKAQLRRAEY 122 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + ++ + GP + + G + L +E + +L+ + + ++K +++ Sbjct: 123 QQVQVKADPIIQVGPFVFDEEKVELRKHGTIIELKPKELGLFTHLLKHPNQIISKEKLYY 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 ++G D +N V HI KLR+K+ + + + + LGY + Sbjct: 183 QVWGE-DFFGFDNTVMVHIRKLREKIEDDPSNPTYLLTVKGLGYKL 227 >gi|153939783|ref|YP_001391249.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|152935679|gb|ABS41177.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|295319285|gb|ADF99662.1| DNA-binding response regulator [Clostridium botulinum F str. 230613] Length = 229 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 47/227 (20%), Positives = 87/227 (38%), Gaps = 9/227 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + F D G + ++ D+ I ++ Sbjct: 5 ILIVDDEDDIVSFMKDYFEDQGYGVITASNGREAIEYCDK---DIDIILLDIMMPNIDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + IR P+I +S S + G DD + KP +E+ ARV A RR K Sbjct: 62 QVCQKIRDKVSCPIIFLSARQSEIDKIKGLSVGGDDYIVKPFSIKELKARVQAHLRREKR 121 Query: 122 SNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + R + E +E I+E L + + +K QI+ + Sbjct: 122 IPLNNRSKISFGKLTLDINSRKVHYEEEEILFTAKEFDIVELLALHPEQVFSKEQIYEKV 181 Query: 178 YGLFDEAVEENVVESHISKLRKK-LRNKLGFDPVDSKRFLGYSIDWN 223 +G +D + N V HI K+R K ++ + + + +GY + N Sbjct: 182 WG-YDAEGDANTVAEHIKKIRAKFIKRNASLNHIATVWGVGYRWEIN 227 >gi|153811804|ref|ZP_01964472.1| hypothetical protein RUMOBE_02197 [Ruminococcus obeum ATCC 29174] gi|149832207|gb|EDM87292.1| hypothetical protein RUMOBE_02197 [Ruminococcus obeum ATCC 29174] Length = 227 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 46/225 (20%), Positives = 89/225 (39%), Gaps = 8/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D + +G S + ++ ++ L G Sbjct: 5 ILIVDDDMAINDMLVKYLRKNGYITYSAYSGTEALLFLEKQKVNLIILDLML--PGLSGE 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117 ++ I+ VP+IG+S ++ + +G DD V KP I + IY Sbjct: 63 QVLAEIKKTKNVPVIGLSAKEDSKSKIFLLKNGADDYVTKPFDIEELLARIETILRRIYE 122 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 SN+ G + + + G + ++ + PL + E IL+ LM + + K I+ + Sbjct: 123 NQYTSNSLLCCGDLNLDTIGMEATLKNQKLPLTKNEFAILKMLMEHPQQVFTKDMIYEQL 182 Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + EN + HIS LRKK+ + + +G+ +D Sbjct: 183 WNET-LEGTENAINVHISNLRKKIAAIDNSKSYIKTVWGIGFKMD 226 >gi|153955658|ref|YP_001396423.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|219856032|ref|YP_002473154.1| hypothetical protein CKR_2689 [Clostridium kluyveri NBRC 12016] gi|146348516|gb|EDK35052.1| Predicted transcriptional regulator [Clostridium kluyveri DSM 555] gi|219569756|dbj|BAH07740.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 229 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 48/220 (21%), Positives = 94/220 (42%), Gaps = 5/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + G +G ++ S D+ ++ L Sbjct: 4 ILIVEDNIALSTGLSFDLEREGYKVDTVCSSGQAREAVRETEFDLIVLDINL--PDGSGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL R I+ +PLI ++ + T+ F+ G DD + KP RVAA+ +R + Sbjct: 62 ELCRWIKELKDIPLIFLTACDMEKDTIKGFELGADDYITKPFSVGIFRRRVAAVLKRCEK 121 Query: 122 SN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 N N G + V D + + F L E R+++ +AN GK + + + ++ Sbjct: 122 ENIGNIYNDGYLMVDFDKLMVIRENKAFMLTSSEYRLMKIFVANSGKVLTRQILLQKLWD 181 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 V+E+ + ++++LR K++NK G + + +GY Sbjct: 182 NDGNFVDEHALTVNVNRLRSKIQNK-GHKYIKTVYGMGYM 220 >gi|148557691|ref|YP_001265273.1| two component transcriptional regulator [Sphingomonas wittichii RW1] gi|148502881|gb|ABQ71135.1| two component transcriptional regulator, winged helix family [Sphingomonas wittichii RW1] Length = 230 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 45/225 (20%), Positives = 87/225 (38%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D A D + G ++ ++ + + D ++ L G + Sbjct: 5 ILLVEDDAATADFVATGLSEHGFVVDRADNGRDGLFHATDGSYDCVILDRML--PGMDGM 62 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAI 115 + IRA P+I +S + + + + G DD + KP R L Sbjct: 63 AVLGAIRAAGIETPVIILSALGAAEDRVKGLEGGSDDYLTKPFAFAELLARVRLLIRHGQ 122 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 R R + + R G+ L RE R+LE+L+ + + V +T + Sbjct: 123 GRSAAAPETRLACDDLEMDLLSRKVRRGGQPIELQPREFRLLEFLLRHAEQVVTRTMLLE 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ + NV++ H+S+LRKK+ + + R GY + Sbjct: 183 GVWD-YHFDPGTNVIDVHVSRLRKKIDEGQARPLLHTVRGSGYRL 226 >gi|222056251|ref|YP_002538613.1| two component heavy metal response transcriptional regulator, winged helix family [Geobacter sp. FRC-32] gi|221565540|gb|ACM21512.1| two component heavy metal response transcriptional regulator, winged helix family [Geobacter sp. FRC-32] Length = 223 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 45/223 (20%), Positives = 89/223 (39%), Gaps = 5/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + G + + N L + D+ ++ L G Sbjct: 3 ILVIEDEVKTAAFIRKGLRESGYTADVANEGFEGLDLALTREYDIIILDVML--PGLDGW 60 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ IR P+I ++ ++Q + + G DD + KP E+L R+ I RR Sbjct: 61 QIISRIRKLKKDTPIIFLTARDAIQDRIKGLELGADDYLVKPFAFSELLVRIRTILRRGP 120 Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 V T + G G+ L +E ++ L G+ + + +I I+ Sbjct: 121 VRTQELITIGDLEIDLMGHRVTRGGKRLDLTPKEFALISLLARRSGEVLTRVRIAERIWD 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + D + NVV+ H+ +LR K+ + + + R +GY ++ Sbjct: 181 I-DFESDTNVVDVHMRRLRAKVDDPFEKKLIHTVRGVGYVLEE 222 >gi|260588963|ref|ZP_05854876.1| DNA-binding response regulator ResD [Blautia hansenii DSM 20583] gi|331083315|ref|ZP_08332428.1| hypothetical protein HMPREF0992_01352 [Lachnospiraceae bacterium 6_1_63FAA] gi|260540742|gb|EEX21311.1| DNA-binding response regulator ResD [Blautia hansenii DSM 20583] gi|330404396|gb|EGG83941.1| hypothetical protein HMPREF0992_01352 [Lachnospiraceae bacterium 6_1_63FAA] Length = 229 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 47/227 (20%), Positives = 85/227 (37%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + D G +E N + D+ ++ L Sbjct: 4 ILIVEDEEAIADLEKDYLELSGFEVEIENRGDVGLKRALEEDYDLFILDLML--PEVDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 E+ R IR P+I +S + G DD + KP E++ARV A R + Sbjct: 62 EICREIRNQKNTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARYER 121 Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N+ E +++ R V GE +E +L +L N + K ++F Sbjct: 122 LIGTGIQENDIIEIRGLKIDKTARRVWVNGEEKNFTTKEFDLLTFLAQNPNRVFTKDELF 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 I+ + + V HI K+R+K+ N +++ +GY Sbjct: 182 KEIW-AMESIGDIATVTVHIKKIREKIEFNTAKPQYIETIWGVGYRF 227 >gi|163814718|ref|ZP_02206107.1| hypothetical protein COPEUT_00869 [Coprococcus eutactus ATCC 27759] gi|158450353|gb|EDP27348.1| hypothetical protein COPEUT_00869 [Coprococcus eutactus ATCC 27759] Length = 225 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 50/222 (22%), Positives = 97/222 (43%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G +E + D+ ++ L G L Sbjct: 5 ILIVEDEEKIARFVELELVHEGYEVEKAFDGRTGLDKALTGDFDLVVLDVML--PGLNGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118 E+ R IR S VP+I ++ ++ + D+G DD + KP E + Sbjct: 63 EVLRRIRKESVVPVIMLTARDAVMDKVSGLDAGADDYLTKPFAIEELLARIRVALKRRGT 122 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++V +R E + + +D + V GE L RE +L LM N+ + + ++ SA+ Sbjct: 123 VEVHTHRIEIRGVCMDTDRHEVTVDGESVELTNREFELLRTLMENKDIVMDREKLLSAVC 182 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G +D E N+++ ++ LR K+ ++ G + + R +GY I Sbjct: 183 G-YDYLGETNIIDVYVRYLRTKIDDRFGVKLITTVRGVGYVI 223 >gi|153954764|ref|YP_001395529.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|146347622|gb|EDK34158.1| Transcriptional regulator [Clostridium kluyveri DSM 555] Length = 228 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 41/223 (18%), Positives = 93/223 (41%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G ++ D+ ++ L + Sbjct: 6 ILIVEDEIKIARFVQLELEHEGYMVDQTGDGRVGLEKALKGGYDLIILDVML--PSLNGM 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R S++P+I ++ + + D G +D + KP E+LAR+ +++ Sbjct: 64 EVLRRLRQISEIPVIMLTAKDEIMDKVMGLDIGAEDYMTKPFAIEELLARIRVVFKHKSN 123 Query: 122 SNNRAETGPI----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 +N + ++ + L ++E +L+YLM N+ +++ I + Sbjct: 124 NNVKVNNIINAGSLQMDIGRHIVTYENSGIDLTKKEFDLLKYLMVNKDIALSRENILEKV 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G +D + N+V+ +I LR K+ +K + + R LGY Sbjct: 184 WG-YDYLGDTNIVDVYIRYLRSKIDDKFNKKYIYTIRGLGYQF 225 >gi|23464658|ref|NP_695261.1| response regulator of two-component system [Bifidobacterium longum NCC2705] gi|23325218|gb|AAN23897.1| response regulator of two-component system [Bifidobacterium longum NCC2705] Length = 240 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 49/235 (20%), Positives = 94/235 (40%), Gaps = 19/235 (8%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++DD + + + ++G + + D+ ++ L G Sbjct: 4 IFIVDDDQAIGEMLSLVLENEGFQTVTCLDGLRAVEMFPIVKPDLILLDVML--PGLDGT 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R IRA S VP+I ++ + ++G DD V KP E+LAR+ A +R K Sbjct: 62 GVARRIRATSNVPIIMLTAKSDTLDVVAGLEAGADDYVPKPFKVAELLARIRARFRIAKP 121 Query: 122 ---------------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166 + N E GPI + G+ L E +L L A G+ Sbjct: 122 AAEDGATGGASGGNANVNHLERGPIVIDRLEHTATKDGKDLNLTPMEFELLFMLAAAAGE 181 Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 ++++ + ++G ++ + + +V H+ +LR K+ + V + R +GY Sbjct: 182 AISRSSLLKNVWG-YENSGDTRLVNVHVQRLRAKVEDDPENPQIVQTVRGIGYKF 235 >gi|298251741|ref|ZP_06975544.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297546333|gb|EFH80201.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 231 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 47/223 (21%), Positives = 93/223 (41%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD D ++ L S D+ ++ L G L Sbjct: 5 ILVVDDDKKTVDLIRLSLKNEHFETLEAYDGIEALALTRSEAPDLIILDWMLPHVG--GL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 +L RI+R S +P+I ++ + L + GVDD + KP RE++ARV + RR Sbjct: 63 DLCRIVRLESTIPVIMLTAKATEDDKLLGLNLGVDDYLTKPFSLRELVARVRVVLRRTYR 122 Query: 122 SNNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 S R + + + + G+ L +E ++LE + N G+ ++ ++ + Sbjct: 123 SEERPATLHFSDLVINVQRHEVWLSGKAIRLTPKEFKLLETFVRNPGRIFSREELVERVC 182 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 G + + ++ H+ LRKK+ + + +GY++ Sbjct: 183 G-SNYDGFDRAIDFHLGNLRKKIDTHSEQPSYIQTVHGVGYTL 224 >gi|326793099|ref|YP_004310920.1| transcriptional regulator [Clostridium lentocellum DSM 5427] gi|326543863|gb|ADZ85722.1| two component transcriptional regulator, winged helix family [Clostridium lentocellum DSM 5427] Length = 225 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 41/222 (18%), Positives = 93/222 (41%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + G G +G ++ ++ + + D+ ++ L Sbjct: 3 ILVVEDDLSIAMGIEYSLGQEGYEVKVCGNVAEGKAYIENEVVDLCLLDLTL--PDGSGY 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 EL ++ + + +P+I ++ + D G DD V KP RE+++R+ + + Sbjct: 61 ELCKVAKENRDIPVIFLTACDDEVNVVMGLDMGADDYVTKPFRIRELISRIKSVLRRHNK 120 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + IR+ + + L E R+L + + G+ +++ Q+ I+ Sbjct: 121 TDSTKAIFNYNNIRINTLEAKVYKNNKEVQLTALEYRLLLTFITHEGQALSRNQLLEGIW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219 + + V +N V +I +LR KL + G + + R +GY Sbjct: 181 DIAGDFVNDNTVTVYIKRLRDKLEDDPGNPTFITTIRGIGYK 222 >gi|293602287|ref|ZP_06684734.1| two component response regulator IrlR [Achromobacter piechaudii ATCC 43553] gi|292819316|gb|EFF78350.1| two component response regulator IrlR [Achromobacter piechaudii ATCC 43553] Length = 229 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 35/226 (15%), Positives = 85/226 (37%), Gaps = 9/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + + ++ + L + D+ ++ L G Sbjct: 3 ILVVEDERKLAEYLKRALSEHNYVVDVASDGVSGLHLARETQYDLILLDVML--PGMDGF 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI------HHREILARVAAI 115 ++ +R +VP++ ++ ++ + G DD + KP L R Sbjct: 61 DVLHELRKSDRVPVLMLTARDKVEDRVRGLQDGADDYLVKPFALSELLARVLALGRRRGH 120 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 N + G + + R G L +E +L LM +G+ +++ + Sbjct: 121 IVAEASRQNVLKVGDLELDLLRRKASRAGTRLDLTAKEFTLLALLMRKQGEVLSRLDLAE 180 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ + + NVVE + +LR K+ + + + R +GY ++ Sbjct: 181 QVWDI-NFNSNTNVVEVAVRRLRGKVDDPFETKVLHTVRGMGYVLE 225 >gi|228991507|ref|ZP_04151455.1| Uncharacterized sensory transduction protein ykoG [Bacillus pseudomycoides DSM 12442] gi|229008403|ref|ZP_04165865.1| Uncharacterized sensory transduction protein ykoG [Bacillus mycoides Rock1-4] gi|228752861|gb|EEM02428.1| Uncharacterized sensory transduction protein ykoG [Bacillus mycoides Rock1-4] gi|228768231|gb|EEM16846.1| Uncharacterized sensory transduction protein ykoG [Bacillus pseudomycoides DSM 12442] Length = 224 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 48/223 (21%), Positives = 96/223 (43%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + + +G ++E D+ ++ L G + Sbjct: 4 ILIIEDEESLAEFLELELKYEGYAVEVQYDGRKGLEAAIEKNYDIILLDLML--PGLNGI 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +RA P+I ++ S+ + DSG DD + KP E+LAR+ I+RR + Sbjct: 62 EVCRRLRATKNTPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARIRVIFRREQK 121 Query: 122 SNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 ++ +++ + R E+ L +E +L M N + + + + + Sbjct: 122 EESKPTLLLAFKDLQLHVESRTLRKNDEIIELTNKEFELLLMFMKNINRVLTRDILLEQV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G +D VE N+V+ ++ LR KL + + + R GY + Sbjct: 182 WG-YDAIVETNIVDVYVRYLRNKLHGVDKEEYIQTVRGAGYVM 223 >gi|16125542|ref|NP_420106.1| DNA-binding response regulator [Caulobacter crescentus CB15] gi|221234288|ref|YP_002516724.1| two-component response regulator protein [Caulobacter crescentus NA1000] gi|13422630|gb|AAK23274.1| DNA-binding response regulator [Caulobacter crescentus CB15] gi|220963460|gb|ACL94816.1| two-component response regulator protein [Caulobacter crescentus NA1000] Length = 242 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 44/235 (18%), Positives = 92/235 (39%), Gaps = 20/235 (8%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVS----------AIEA 51 ++++D V D +G + D+ I Sbjct: 3 ILVVEDDTRVADFLERGLKAEGYKVRVARDGVSGLEAAR----DLDAMLRELDQRGVILL 58 Query: 52 FLIGKGEKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR---- 106 L+ +E+ + +RA P++ ++ ++ + +G DD + KP Sbjct: 59 DLMLPKMTGMEVCQTLRASGVLTPVLMLTALGAVDDRVTGLRTGADDYLVKPFSFEELLA 118 Query: 107 EILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166 I A + + +N + G + + GE L RE +LE +++ G+ Sbjct: 119 RIEALLRRSRDQRAPANRTLKAGNVELDRTTMRVSRDGEEVVLTARELALLELFLSSPGR 178 Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +++ +I S ++G+ DE NVV+ ++ +LR K+ L + + R LGY ++ Sbjct: 179 VLSRERILSNVWGV-DEDPLTNVVDVYVRRLRAKIDPPLASSFITTVRGLGYRLE 232 >gi|325849613|ref|ZP_08170851.1| response regulator receiver domain protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480094|gb|EGC83171.1| response regulator receiver domain protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 218 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 41/220 (18%), Positives = 97/220 (44%), Gaps = 6/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++++G + ++G S+ ++ ++ + L Sbjct: 3 ILVVEDDQIIREGVCEFLSELSYDVDGACDGREALDKFSNNSYNLLILDIQI--PFINGL 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ IR S++P++ ++ + + + F + D + KP + RV ++ +R Sbjct: 61 KVLEEIRKTSRIPVLILTAFNDEEYKISAFTNLCDGYMEKPFSLSLLKLRVESLLKRYYG 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 E ++ GE + +E IL++L+ N G +++ QI ++ Sbjct: 121 DREIFEYKDAKINFSSYKATYGGENIDMNAKELEILKFLLENEGLALSRMQIIENVWKES 180 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 DE + V++ +I +LRKKL G D + + R +GY ++ Sbjct: 181 DEIPYDRVIDVYIKQLRKKL----GLDCIKTIRNVGYKLE 216 >gi|297159383|gb|ADI09095.1| two-component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 234 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 47/233 (20%), Positives = 95/233 (40%), Gaps = 22/233 (9%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 + ++D ++++ DG + + R D++ ++ + G + Sbjct: 7 LFVEDDDVIREATQLALERDGFVVTAAPDGLTGLERFRADRPDIALLDVMV--PGLDGVS 64 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R IR S VP+I +S + ++G DD V KP ++AR+ A+ RR + Sbjct: 65 LCRRIRDESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRRFGHA 124 Query: 123 NNRA---------------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167 + G + V +G + G+ L E R+L A G Sbjct: 125 SGPGRGAEAEPDEPEGGVLRFGDLEVDPEGMEVRRAGQQVALTPTEMRLLLEFSAVPGTV 184 Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +++ ++ ++ + + VV+ H+ +LR K+ G D +++ R GY + Sbjct: 185 LSRDRLLERVWD-YGWGGDTRVVDVHVQRLRGKI----GQDRIETVRGFGYKL 232 >gi|297201515|ref|ZP_06918912.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] gi|297147907|gb|EFH28783.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] Length = 237 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 46/236 (19%), Positives = 83/236 (35%), Gaps = 21/236 (8%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L +D ++ +G + DV ++ G L+ Sbjct: 2 LLAEDDRAIRHALERALTLEGYQVTAVADGVEALAQAHKTPPDVLVLDVM--MPGIDGLQ 59 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R++RA P++ ++ Q + D+G DD V KP E+ AR+ A+ RR Sbjct: 60 VCRVLRAEGDRTPILMLTALVETQDRIAGLDAGADDYVVKPFDVEEVFARLRALLRRTSP 119 Query: 122 SNNRAETGPI-----------------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANR 164 R+ R L R E +LE L+ N Sbjct: 120 DGMAPVGAAPKAVAPELPQGRIEAAGLRMDIQARRAWRGTRELELTRTEFELLELLVRNA 179 Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G + + I+ I+G +D + ++ LR+KL + + R +GY + Sbjct: 180 GIVLDHSTIYDRIWG-YDFGPGSKNLAVYVGYLRRKLDEPGAPQLIHTVRGVGYVL 234 >gi|288957923|ref|YP_003448264.1| two-component response regulator [Azospirillum sp. B510] gi|288910231|dbj|BAI71720.1| two-component response regulator [Azospirillum sp. B510] Length = 226 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 51/222 (22%), Positives = 93/222 (41%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + G ++ N + +L + DV ++ L G L Sbjct: 3 ILVIEDDRQAASYLAKGLKEAGHVVDVANDGKEGLFLAGAEHYDVMIVDRML--PGRDGL 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118 L +++RA P++ +S S+ + +G DD + KP E+ V R Sbjct: 61 SLVQVLRAAGNDTPVLFLSALGSVDDRVKGLKAGGDDYLTKPFAFSELLARIEVLVRRRG 120 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 R G + + R + G+ L RE +LEYLM N G V +T + ++ Sbjct: 121 AAQPQTRLAVGDLELDLLSRSVKRCGKAIDLLPREFSLLEYLMRNAGSVVTRTMMLENVW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + NV++ HI++LR+K+ + + R GYS+ Sbjct: 181 D-YHFDPQTNVIDVHIARLRQKIDKDFPTPLIHTVRGAGYSL 221 >gi|124024335|ref|YP_001018642.1| two-component response regulator [Prochlorococcus marinus str. MIT 9303] gi|123964621|gb|ABM79377.1| two-component response regulator [Prochlorococcus marinus str. MIT 9303] Length = 268 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 40/229 (17%), Positives = 85/229 (37%), Gaps = 10/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +LI+D +++ + +G ++ + L D+ ++ L G + Sbjct: 5 ILLIEDDQDMRELVSSHLEHNGFDVQKAEDGIKGQALALQYTPDLILLDLMLPNVDGLTL 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R + +P++ I+ + + F+SG DD + KP E+ RV A+ RR Sbjct: 65 CQRLRRDERTAGIPILMITALGGTKDKVTGFNSGADDYLTKPFDLEELQVRVKALLRRTD 124 Query: 121 VSNNRAETGPIRVFS-------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + + + L E +L L+ G+ VA + I Sbjct: 125 RAPVGTNAHHEILSYGPLTLVPERFEAIWFDRPVRLTHLEFELLHCLLQRHGQTVAPSLI 184 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 ++G ++ + + H+ LR KL + + GY ++ Sbjct: 185 LKEVWG-YEPDDDIETIRVHVRHLRTKLEPDPRKPRFIKTVYGAGYCLE 232 >gi|94967342|ref|YP_589390.1| two component transcriptional regulator [Candidatus Koribacter versatilis Ellin345] gi|94549392|gb|ABF39316.1| two component transcriptional regulator, winged helix family [Candidatus Koribacter versatilis Ellin345] Length = 232 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 44/219 (20%), Positives = 89/219 (40%), Gaps = 5/219 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ +D + + ++G S+ + + S D ++ L G Sbjct: 3 ILVAEDEKRLLELLRNGLAEEGHSVITSMNGVDALDIAMSGEFDALLLDVML--PGMDGF 60 Query: 62 ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-ILARVAAIYRRL 119 E+ R + QVP++ ++ + + D+G DD V KP E + A R Sbjct: 61 EVARRLRHKGRQVPILMLTARDAESDIIRGLDNGADDYVTKPFSFSELLARLRAVTRRTG 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++ + + S + L R E +L+ LM N G+ V++ + ++G Sbjct: 121 PHRSSTLVCEDLTLDSASHEVFRGDRPIHLTRTEFLLLQKLMQNAGRPVSRQSLIGNVWG 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 +D A+E N +++ I LR+K+ + + + R GY Sbjct: 181 -YDRAIENNTLDAFIRLLRQKVDTQGHPKLIQTVRGFGY 218 >gi|28896527|ref|NP_802877.1| two-component response regulator (CsrR/CovR) [Streptococcus pyogenes SSI-1] gi|28811781|dbj|BAC64710.1| putative two-component response regulator (CsrR/CovR) [Streptococcus pyogenes SSI-1] Length = 228 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 41/224 (18%), Positives = 82/224 (36%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + +G + + D+ ++ L Sbjct: 5 ILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLML--PEMDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAIY 116 E+ R ++ ++ ++ S+ + D G DD + KP R Sbjct: 63 EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFCRQDI 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 K ++ + + R + L +RE +L LM N + + + ++ S Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +DEAVE NVV+ +I LR K+ + + R +GY I Sbjct: 183 VW-KYDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225 >gi|150019307|ref|YP_001311561.1| two component transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149905772|gb|ABR36605.1| two component transcriptional regulator, winged helix family [Clostridium beijerinckii NCIMB 8052] Length = 229 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 47/220 (21%), Positives = 95/220 (43%), Gaps = 5/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + L ++ ++ L G Sbjct: 11 ILIVDDEKSIVDFIKMGLEGEGYLVYEAYDGNEAIELARKINPNIVILDIML--PGMDGY 68 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-AIYRRLK 120 E+ II+ + +I ++ + + D G DD + KP +E+LAR+ I Sbjct: 69 EVCSIIKKSIKTSVIMLTALDEVDDKVKGLDIGADDYMAKPFSFKELLARINARIRNSFP 128 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 ++ G +V + + +V LP + +L +L+ N G ++K+ I ++G Sbjct: 129 ELSDITNIGNFKVDDKAHEITYREKVLDLPPTQYNLLSFLLMNNGIALSKSLILEKVWG- 187 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D E+N+VE +I LR K+ +K + + + R +GY + Sbjct: 188 YDFNGEDNIVEVYIRYLRDKIGDK-DHNIIKTVRGVGYKM 226 >gi|322806184|emb|CBZ03752.1| two-component response regulator [Clostridium botulinum H04402 065] Length = 229 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 49/227 (21%), Positives = 89/227 (39%), Gaps = 9/227 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + F D G S+ ++ D+ I ++ Sbjct: 5 ILIVDDEDDIVSFIKDYFEDQGYSVITASNGREAIEYCDK---DIDIILLDIMMPNIDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + IR P+I +S S + G DD + KP +E+ ARV A RR K Sbjct: 62 QVCQNIRDKVSCPIIFLSARQSEVDKIKGLGVGGDDYIVKPFSIKELKARVQAHLRREKR 121 Query: 122 SNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + R + + L +E I+E L + + +K QI+ I Sbjct: 122 VPLNNRSKISFGKLTLDLNSRKVHYEEDEIILTAKEFDIVELLALHPEQVFSKEQIYEKI 181 Query: 178 YGLFDEAVEENVVESHISKLRKK-LRNKLGFDPVDSKRFLGYSIDWN 223 +G +D + N V HI K+R K ++ + + + +GY + N Sbjct: 182 WG-YDAEGDANTVAEHIKKIRAKFIKRNASLNHIATVWGVGYRWEIN 227 >gi|300868620|ref|ZP_07113234.1| two component transcriptional regulator [Oscillatoria sp. PCC 6506] gi|300333379|emb|CBN58426.1| two component transcriptional regulator [Oscillatoria sp. PCC 6506] Length = 225 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 54/221 (24%), Positives = 101/221 (45%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 + ++D A + A + G ++ ++ + DV ++ L G+ L Sbjct: 3 ILYVEDEAKIASFVCAGLKEQGFVVDYCDNGDEGYLRAMDNEYDVLVLDIML--PGKDGL 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + + +R + P+I ++ L L+ + G DD + KP E++AR+ A+ RR+ Sbjct: 61 AILKSLRRSGRNVPVILLTARNELDDRLEGLNLGADDYLAKPFFVEELIARIHAVIRRVS 120 Query: 121 VSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 GP+++ R + L RE +LEYLM + G+ + +TQI ++G Sbjct: 121 GERQNILSLGPLKLDRITRQVTCNQQSVELTTREFNLLEYLMRSPGRVLTRTQILEHVWG 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D N+V+ I ++RKKL G ++S R +GY Sbjct: 181 -YDFNPTTNLVDVCIQRIRKKLERMGGASCIESVRGVGYCF 220 >gi|288961886|ref|YP_003452196.1| DNA-binding two-component response regulator [Azospirillum sp. B510] gi|288914166|dbj|BAI75652.1| DNA-binding two-component response regulator [Azospirillum sp. B510] Length = 230 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 48/227 (21%), Positives = 82/227 (36%), Gaps = 12/227 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LIDD ++D +G ++ L + D+ ++ Sbjct: 4 ILLIDDDPHIRDIVRFALKREGFAVVEAGDGVQGLALAQADSPDLILLDIG--MPEIDGT 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARVA 113 E+ R +R S+VP+I +S + + G DD V KP RE + V Sbjct: 62 EVCRRLRRESRVPIIFLSSRDDEIDRILGLELGGDDYVTKPFSPRELTARVKAVLRRVVP 121 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + +R+ DG L E +L L GK ++ + Sbjct: 122 PEPPVPEGPAPVLRNNRLRLDLDGVRAFWDEMEVVLTATEFCLLRTLADRPGKVFSRDAL 181 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 Y + V + V+SHI ++R K + G PV++ LGY + Sbjct: 182 MDGTY-ATERYVADRTVDSHIRRVRAKFQAVGGA-PVETVHGLGYKL 226 >gi|323342046|ref|ZP_08082279.1| DNA-binding response regulator [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464471|gb|EFY09664.1| DNA-binding response regulator [Erysipelothrix rhusiopathiae ATCC 19414] Length = 222 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 44/222 (19%), Positives = 94/222 (42%), Gaps = 6/222 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD +++ G+ + + + S DV ++ Sbjct: 5 LIVDDEEKIREVAKEYAKATGLLCDEASDGAEAIEMVKSNDYDVVVLDIM--MPNLDGFT 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-AIYRRLKV 121 R I+ VP+I +S L F+ G+DD V KP +E++AR+ R + Sbjct: 63 ACREIKKIKDVPIIMLSARQEEFDKLLGFELGIDDYVTKPFSPKELMARIKAVSERAKGM 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 ++ G + V GR+ + GE + +E +L +L+ ++ + +++ + ++ + Sbjct: 123 KHSVYSFGGLEVDITGRNLIIDGERINVTPKEFDLLVFLIQHKDQALSRDVLLDKVW-NY 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 + + V++HI LR+ L D + + R GY + N Sbjct: 182 NYYGDYRTVDTHIKMLRQNLGPY--RDYIVTVRGTGYKFEIN 221 >gi|225376300|ref|ZP_03753521.1| hypothetical protein ROSEINA2194_01938 [Roseburia inulinivorans DSM 16841] gi|225211946|gb|EEG94300.1| hypothetical protein ROSEINA2194_01938 [Roseburia inulinivorans DSM 16841] Length = 227 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 40/223 (17%), Positives = 93/223 (41%), Gaps = 8/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + ++ + + E + + +++ I ++ Sbjct: 6 ILVVDDESRMRKLVRDFLVREDYEVLEAGDGEEALDIFYKEK-NIALIILDVMMPKINGW 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117 ++ R +R S+VP+I ++ L F+ GVD+ ++KP + + A + Sbjct: 65 DVCREVRETSKVPIIMLTAKSDESDELTGFELGVDEYISKPFSPKILVARVNALLRRSGL 124 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 E G I++ V G L +E +L+Y M N+G +++ +I + + Sbjct: 125 TAGNDEKFVEAGGIKLDKTAHLVTVDGRPIELSIKEFELLDYFMENQGIALSREKILNNV 184 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + +D + +++H+ KLR K+ K + + + +GY Sbjct: 185 W-NYDYFGDARTIDTHVKKLRAKIGEKG--EYIKTIWGVGYKF 224 >gi|163940843|ref|YP_001645727.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163863040|gb|ABY44099.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] Length = 228 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 47/226 (20%), Positives = 88/226 (38%), Gaps = 11/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++++ ++G ++ + + + ++ L Sbjct: 5 ILIVEDEDILREIMKDYLLNEGYNVLEAIDGKEALSIFEEHEVHLIILDIML--PELDGW 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR------EILARVAAI 115 + R IR S VP+I ++ TL F+ G DD V KP + L Sbjct: 63 AVCRRIRKKSNVPIIMLTARVDEDDTLLGFEMGADDYVTKPYSPPILLARAKRLIESRYS 122 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + + I V R V GE + E IL Y M N+G +++ Q+ + Sbjct: 123 STINVSTADTLTSSGIHVHFPSRTVTVDGEDISMTHTEFEILTYFMQNQGIVISREQLIT 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 I+G ++ A ++ V SHI LR KL + + GY + Sbjct: 183 KIWG-YEFAGDDRTVNSHIRNLRHKLG--GKATCIVTVVRTGYKFE 225 >gi|297529461|ref|YP_003670736.1| two component transcriptional regulator, winged helix family [Geobacillus sp. C56-T3] gi|297252713|gb|ADI26159.1| two component transcriptional regulator, winged helix family [Geobacillus sp. C56-T3] Length = 224 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 44/222 (19%), Positives = 90/222 (40%), Gaps = 8/222 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD ++ + G E L S D ++ + Sbjct: 7 LIVDDEEEMRLLVGMYLENAGFRCLEAGDGEEALVLLSQHPVDAVLLDVM--MPKQDGFA 64 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRRL 119 + IR S VP++ ++ + G DD + KP E++AR+ +R+ Sbjct: 65 VCARIREQSDVPILFLTALGEEWDKVKGLKLGGDDYIVKPFSPGELIARLEAVLRRVQRV 124 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + ++ R + G + + GR V GE L +E +L +L +RG ++ + ++G Sbjct: 125 RENDGRLQFGDLAIDEKGRTVTVGGEAVKLTLKEFELLLFLAKHRGLVFSRDDLLVKVWG 184 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +D V++H+ LR KL++ + + +GY + Sbjct: 185 -YDYTGNARTVDTHVKTLRMKLKD--AARHIQTVWGIGYKFE 223 >gi|149375578|ref|ZP_01893348.1| response regulator, OmpR-family protein [Marinobacter algicola DG893] gi|149360283|gb|EDM48737.1| response regulator, OmpR-family protein [Marinobacter algicola DG893] Length = 236 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 38/232 (16%), Positives = 89/232 (38%), Gaps = 17/232 (7%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + + D G++ + + D+ ++ L G L Sbjct: 6 LIVEDNPGIGELVRMHVADLGMNAVLCDRGDTGLERFREGDIDLVVLDLML--PGMDGLS 63 Query: 63 LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI------------HHREIL 109 + R IR+ VP++ ++ + + + G DD + KP R Sbjct: 64 VCREIRSGPGYVPVLMLTAKSTELDRVLGLEMGADDYLTKPFSVAELSARVKALFRRVDA 123 Query: 110 ARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 ++ +T +R+ R V + L RE +L + ++ G+ + Sbjct: 124 MSSSSGETSGPEELGELDTEGLRIDPTRRRVFVWEQEVELTAREFDLLWHFASHPGRVFS 183 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 + Q+ ++G ++ E+ V +HI++LR K+ + +++ +GY Sbjct: 184 RVQLLDKVWG-YNHEGYEHTVNTHINRLRGKIEQDPARPEFIETVWGVGYRF 234 >gi|300853968|ref|YP_003778952.1| putative two-component response regulator [Clostridium ljungdahlii DSM 13528] gi|300434083|gb|ADK13850.1| predicted two-component response regulator [Clostridium ljungdahlii DSM 13528] Length = 236 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 42/228 (18%), Positives = 86/228 (37%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + +G + +S + + + I+ L Sbjct: 5 LMIVEDDEAIANILKEHLEKEGYEVNWASSGKEGLEDFKTYEFALVMIDIML--PEMDGF 62 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L + IR + +P++ IS + + G DD + KP E+ AR+ A RR K Sbjct: 63 TLCKNIRWINEDIPVVIISAKQTEMDKVKGLKLGADDYITKPFSLIEVSARIEAHLRRYK 122 Query: 121 VSNNRAETGPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + I F + + V + + +E +L + N K +K ++ Sbjct: 123 KVDRESAVNGILKFKNGLIIIPEEKKVTVNEKEIQMTIKEFELLSLMAQNPNKVFSKEEL 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 + I+ D N V HI +LR+K+ + + + +GY Sbjct: 183 YHHIWESMDVEGN-NTVTVHIKELREKIGDSSKNPTFIKTVWGVGYKF 229 >gi|297627027|ref|YP_003688790.1| Response regulator receiver [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922792|emb|CBL57370.1| Response regulator receiver [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 225 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 47/223 (21%), Positives = 96/223 (43%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D +D + +G ++ E D+ ++ G + Sbjct: 4 ILIIEDEESYRDAMSFMLDREGFAVAAAPDGEQGLAEFDRNGADLVLLDLM--MPGLPGI 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118 E+ + +R S VP+I ++ S + + G DD V KP RE + V R Sbjct: 62 EVCKALRQRSDVPVIMVTARDSEVDKVVGLELGADDYVTKPFSQRELVARIRAVLRRGRA 121 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++ + E+G +R+ + + V+ E L +E +LE L+ N G+ +++ Q+ ++ Sbjct: 122 EELVPDVLESGDVRMDVERHEVAVRDEPVRLALKEFELLELLLRNSGRVMSREQLIDRVW 181 Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 G D + ++ H+ +LR K+ + + + R LGY Sbjct: 182 G-SDYVGDTKTLDVHVKRLRAKIELDPSHPTALVTVRGLGYKF 223 >gi|282910995|ref|ZP_06318797.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WBG10049] gi|282324690|gb|EFB55000.1| phosphate regulon transcriptional regulatory protein PhoB [Staphylococcus aureus subsp. aureus WBG10049] gi|312438183|gb|ADQ77254.1| response regulator [Staphylococcus aureus subsp. aureus TCH60] Length = 219 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 46/219 (21%), Positives = 87/219 (39%), Gaps = 4/219 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + +++ + S D+ ++ L L Sbjct: 4 ILIVEDEQNLVRFLELELTHENYNVDTEYDGQDGLDKALSHYYDLIILDLML--PSINGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR P+I I+ + D G DD + KP E+L R + Sbjct: 62 EICRKIRQQQSTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELL-ARIRAILRRQP 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + I + + V G L + E +L L N+ + + QI + ++G + Sbjct: 121 QKDIIDVNGITIDKNAFKVTVNGAEIELTKTEYDLLYLLAENKNHVMQREQILNHVWG-Y 179 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + VE NVV+ +I LR KL+ +++ R +GY I Sbjct: 180 NSEVETNVVDVYIRYLRNKLKPYDRDKMIETVRGVGYVI 218 >gi|226358137|ref|YP_002787876.1| response regulator, OmpR; phosphate regulon transcriptional regulatory protein phoB [Deinococcus deserti VCD115] gi|226319780|gb|ACO47774.1| putative response regulator, OmpR; putative phosphate regulon transcriptional regulatory protein phoB [Deinococcus deserti VCD115] Length = 223 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 52/220 (23%), Positives = 88/220 (40%), Gaps = 8/220 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + A G +G + + L R DV+ ++ L G Sbjct: 5 LIVDDDPAILEILRAYLGAEGHEVLEAQDGQEARALL--PRADVAVMDWML--PGAAGPV 60 Query: 63 LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R RA +P++ ++ + L + GVDD V KP REI R Sbjct: 61 LAREARAAGLDLPILMLTARGEEEDKLHGLEEGVDDYVVKPFSPREI-VARVRALLRRVG 119 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + + + R V G L R E +L L + G + ++ ++G Sbjct: 120 VHQDVRSDSLTMDLKRRTVMVDGLPVELSRLEFDLLAALALHPGLAWTRERLLERLWG-P 178 Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 D E VV+ HI+ LRKKL + +++ R +GY Sbjct: 179 DFPGTERVVDVHITALRKKLGDDPERPRYIETVRGVGYRF 218 >gi|218233819|ref|YP_002367876.1| regulatory protein VanR [Bacillus cereus B4264] gi|218161776|gb|ACK61768.1| regulatory protein VanR [Bacillus cereus B4264] Length = 229 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 45/225 (20%), Positives = 92/225 (40%), Gaps = 10/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ ++G + + + D+ ++ L + Sbjct: 7 ILIVDDDIEIRKIVSIYLKNEGYEIIDASDAIEALETLRNKTIDLIILDIML--PKMDGI 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILA------RVAAI 115 E IR Q+P+I +S + SG +D + KP + E++A R + Sbjct: 65 EACLKIREQYQMPIIFLSAKDEDIDKIQGLMSGAEDYITKPFNPLELMARIKSQLRRYRV 124 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 Y+ +V E G ++V + R ++ E L +E IL L+ N+GK + +I+ Sbjct: 125 YQTEEVKQFIHEIGHLKVDEETRQVFIRNEEVRLTPKEFDILSLLVRNKGKVFSVEKIYE 184 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYS 219 ++ +N V HI+K+R+K+ + + +GY Sbjct: 185 MVW-EDSFYKSDNTVMVHITKIREKIEENPRQPVYLKTVWGVGYR 228 >gi|118470690|ref|YP_884659.1| two component response transcriptional regulatory protein prra [Mycobacterium smegmatis str. MC2 155] gi|118171977|gb|ABK72873.1| two component response transcriptional regulatory protein prra [Mycobacterium smegmatis str. MC2 155] Length = 246 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 48/222 (21%), Positives = 96/222 (43%), Gaps = 7/222 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61 +++DD V+ G + S + L S+ D ++ + G V+ Sbjct: 24 LMVDDDPDVRTSVARGLRHSGFDVRVAASGKEALRLLSTESHDALVLDVQMPELDGVAVV 83 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 R + + +P+ +S ++ + ++G DD + KP E++AR+ Sbjct: 84 TALRALG--NDIPICVLSARDTVNDRIAGLEAGADDYLTKPFDLGELVARLHALLRRASH 141 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + ++ GP+ + + R V GE L +RE +L L N G +++ ++ ++ Sbjct: 142 TEQPSDTMTVGPVTIDTARRLVFVSGERVDLTKREFDLLAVLAENAGVVLSRQRLLELVW 201 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G +D V+ NV + IS LR+KL + + R +GY + Sbjct: 202 G-YDFDVDTNVADVFISYLRRKLERDGVPRVIHTVRGIGYVL 242 >gi|94971194|ref|YP_593242.1| two component transcriptional regulator [Candidatus Koribacter versatilis Ellin345] gi|94553244|gb|ABF43168.1| two component transcriptional regulator, winged helix family [Candidatus Koribacter versatilis Ellin345] Length = 237 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 38/230 (16%), Positives = 93/230 (40%), Gaps = 11/230 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + G + +E + E L + ++ + ++ G+ Sbjct: 4 ILIVEDEEHLARGLQFNLQAEDHEVEVAGTGELALDLLLNEKQHFDVMVLDIMLPGKDGF 63 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI--------HHREILARV 112 + R +R A + +P++ ++ + L F++G DD + KP + R Sbjct: 64 TVARELRDAQNFIPILMLTARGRSEDILQGFEAGTDDYLPKPFELAILTARLDSLLRRRR 123 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + V + D + V +V L E ++L+YL+ + G+ V++ Sbjct: 124 WSQKVEAPVEPEVLRFNGKFLDFDALELHVGDQVHNLTLMEAQLLQYLIRSAGRPVSRKS 183 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 I ++GL + + +++ I +LR+ + + + + R +GY + Sbjct: 184 ILEEVWGLHE-DTDTRAIDNFIVRLRRYIEADPSHPKHLQTVRGIGYRFN 232 >gi|329769598|ref|ZP_08261002.1| hypothetical protein HMPREF0433_00766 [Gemella sanguinis M325] gi|328838353|gb|EGF87962.1| hypothetical protein HMPREF0433_00766 [Gemella sanguinis M325] Length = 238 Score = 139 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 40/230 (17%), Positives = 87/230 (37%), Gaps = 14/230 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++IDD ++ I +G ++ + + ++ L Sbjct: 6 LVIDDEERIRKLLIMYLEKEGYIVDEATNGQDGLERLKYMDYSCVLLDVHLPM--LNGKT 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL---------ARVA 113 + +R P+I +S Q+ ++ F+ G DD V KP RE++ + + Sbjct: 64 ILAELRKTKATPVIIMSAQADEQSRVEGFELGADDYVIKPFSPRELMLRVNAILQRTKRS 123 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 Y + + + + + V+ L +E +L +L + K +T+I Sbjct: 124 VFYTPELYTKDVLVFPGLIIDVNAHKVIVEDSEIFLTPKEFDLLLFLAKSPDKAFKRTEI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLG--FDPVDSKRFLGYSID 221 A++ +D + V++HI ++RKK+ + + +GY D Sbjct: 184 LRAVWD-YDFYTDLRTVDTHIKRVRKKIDKISPRVAKMIITVWGIGYKFD 232 >gi|296116946|ref|ZP_06835548.1| two component response regulator PhoB [Gluconacetobacter hansenii ATCC 23769] gi|295976512|gb|EFG83288.1| two component response regulator PhoB [Gluconacetobacter hansenii ATCC 23769] Length = 261 Score = 139 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 41/236 (17%), Positives = 84/236 (35%), Gaps = 19/236 (8%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ +D + G + S + D+ ++ L G + Sbjct: 21 ILVAEDDEALSVLVTYNLEAAGYEVRAVADGLDALEQVGSWQPDLLVLDWML--PGLSGV 78 Query: 62 ELPRIIR----AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---- 113 +L R +R A +P++ ++ + ++ D+G DD + KP + ARV Sbjct: 79 DLCRRLRARGGAMCDMPVLMLTARTAESDSVHALDTGADDYLTKPCGMEALNARVRALLR 138 Query: 114 --------AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRG 165 + + + + G V E R+LE+ M N Sbjct: 139 RSVLNAGAGGVQAQADATAVLRFVDVVLDPVSHRVTRAGRVLAPGPTEYRLLEFFMRNPN 198 Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + ++ + +++ VE V+ HI +LR+ L D + + R GY++D Sbjct: 199 RVFSREDLLRSVW-ERGVHVESRTVDVHIRRLRRILNEGDLPDLIRTVRASGYALD 253 >gi|302875608|ref|YP_003844241.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] gi|307690139|ref|ZP_07632585.1| two component transcriptional regulator, winged helix family protein [Clostridium cellulovorans 743B] gi|302578465|gb|ADL52477.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] Length = 222 Score = 139 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 38/223 (17%), Positives = 94/223 (42%), Gaps = 8/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++ +G + + D+ ++ L + Sbjct: 4 ILVVEDDDRIRKLICNYLSKEGFEIIEAVDGVSAIEKFKNNNIDLIVLDLML--PKLNGI 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 + IR S V +I ++ + L +++G DD + KP + ++A++ + Sbjct: 62 TVCSKIREISDVHIIMLTAKSQEEDKLIGYETGADDYITKPFSPKVLVAKIKAVLKRIKE 121 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + + + + R+ + GE L +E ++ YL N+G +++ I ++ Sbjct: 122 DEKEDGVLQFDDLIINELSREVILSGETLDLTPKEIDLILYLAKNKGIALSREHILEKVW 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 G FD + V++++ +LR+KL++K + + R GY + Sbjct: 182 G-FDYEGDIRTVDTNVKRLRQKLKDK--ATVISTVRGSGYKFE 221 >gi|154505123|ref|ZP_02041861.1| hypothetical protein RUMGNA_02636 [Ruminococcus gnavus ATCC 29149] gi|153794602|gb|EDN77022.1| hypothetical protein RUMGNA_02636 [Ruminococcus gnavus ATCC 29149] Length = 236 Score = 139 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 43/230 (18%), Positives = 83/230 (36%), Gaps = 13/230 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A + + + G + S + D ++ L G Sbjct: 10 ILIVEDDADISGLLVKIMEGAGYQVRQVFSGTEALFCMERELPDCVLLDLML--PGMTGE 67 Query: 62 ELPRIIR--AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 + IR ++P++ +S S+Q + G DD + KP E++ARV A RR Sbjct: 68 AVLDQIRQKQKKEMPVLILSAKVSVQDKVKLLRLGADDYITKPFDPEEVIARVEAAMRRY 127 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPL-------PRRERRILEYLMANRGKRVAKTQ 172 E Q + E IL L+ N K ++ Sbjct: 128 TKEAQNMEAEQEVFRYKNLSLYPQSRKVEVSGIELPLTMHEYDILYLLIQNPQKVYSREH 187 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221 ++ ++ E+N V H+S LRKK+ + + + +G+ ++ Sbjct: 188 LYEQVW-KGGYYGEDNTVNVHVSNLRKKIQKADKEESYIKTVWGIGFKLE 236 >gi|254249195|ref|ZP_04942515.1| Heavy metal response regulator [Burkholderia cenocepacia PC184] gi|124875696|gb|EAY65686.1| Heavy metal response regulator [Burkholderia cenocepacia PC184] Length = 223 Score = 139 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 42/221 (19%), Positives = 94/221 (42%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + +++ + + +L D+ ++ L Sbjct: 3 ILIVEDEPKMASYLRKGLTEASYTVDVAENGQDGLFLALHEDFDLIVLDVMLPA--LDGF 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +RA Q P++ ++ +++ + + G DD + KP + E LAR+ ++ RR Sbjct: 61 EVLRRLRAQKQTPVLLLTAREAIEDKVAGLELGADDYLLKPFAYAEFLARIRSLLRRAPR 120 Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + R L +E +L+ L G+ + +T I S I+ + Sbjct: 121 NVRDILHVADLEIDLLKRRVRRADARIDLTAQEFALLQLLAEREGEVLTRTFITSQIWDM 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + NVV++ I +LR K+ N + + R +GY ++ Sbjct: 181 -NFDSDTNVVDAAIKRLRAKIDNAYEKKLIHTIRGMGYVLE 220 >gi|58583289|ref|YP_202305.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|84625120|ref|YP_452492.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188578384|ref|YP_001915313.1| phosphate regulon transcriptional regulatory protein PhoB [Xanthomonas oryzae pv. oryzae PXO99A] gi|58427883|gb|AAW76920.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|84369060|dbj|BAE70218.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188522836|gb|ACD60781.1| phosphate regulon transcriptional regulatory protein PhoB [Xanthomonas oryzae pv. oryzae PXO99A] Length = 229 Score = 139 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 44/222 (19%), Positives = 81/222 (36%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +++DD ++D + + D+ ++ L G G + Sbjct: 5 ILIVDDEPAIRDMVAFALRKGEFEPIHAGDAREAQTAIADRVPDLILLDWMLPGTSGLDL 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118 R + +P+I ++ + ++GVDD V KP RE+ R R Sbjct: 65 ARRWRKEQLTRDIPIIMLTARGEENDRVGGLEAGVDDYVVKPFSARELLARIRAVMRRTR 124 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + G +R+ P+ E R+L + M + + +TQ+ ++ Sbjct: 125 EDDEDGSVAVGRLRIDGAAHRVFAGDAPVPIGPTEYRLLHFFMTHPERVYTRTQLLDHVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G VEE ++ HI +LRK L + V + R GY Sbjct: 185 GGSVY-VEERTIDVHIRRLRKTLEPFGLENMVQTVRGSGYRF 225 >gi|304319971|ref|YP_003853614.1| DNA-binding response regulator [Parvularcula bermudensis HTCC2503] gi|303298874|gb|ADM08473.1| DNA-binding response regulator [Parvularcula bermudensis HTCC2503] Length = 238 Score = 139 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 44/229 (19%), Positives = 88/229 (38%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A +++ + + +A+ D+ ++ GE L Sbjct: 6 ILIVDDEASIREPLADYLAGHHYDILRAKDGLEAREVCRTAQPDLVLLDIM--MPGEDGL 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R +A P+I ++ + + G DD V KP + RE++AR+ A+ RR Sbjct: 64 SLLREWQATGGPPVILLTAMADDTDRIVGLELGADDYVTKPFNPRELVARIKAVLRRAGG 123 Query: 122 SNNRAETGPIRVFSD---------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 +S PL E +L L+ + G+ +++ Q Sbjct: 124 EGANPPPDACEGYSFAGFHLDIGRRHLTGPDHPSIPLTGGEFALLHVLLDSAGRVLSRDQ 183 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + A G + +++ IS++RKK+ + + + R GY + Sbjct: 184 LLDATQGREAHLFD-RSIDNQISRIRKKIELDPKQPQIIKTVRNGGYVL 231 >gi|329935904|ref|ZP_08285706.1| putative two-component system response regulator [Streptomyces griseoaurantiacus M045] gi|329304595|gb|EGG48471.1| putative two-component system response regulator [Streptomyces griseoaurantiacus M045] Length = 239 Score = 139 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 54/224 (24%), Positives = 97/224 (43%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ +D +G ++ ++R D+ ++ L Sbjct: 5 ILVAEDDVKQAQLIRIYLEREGHDIQVVADGRSAIDRARASRPDLLVLDVM--MPHVDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R++RA S+VP++ ++ + + L D G DD + KP RE+ ARV A+ RR + Sbjct: 63 DVCRVLRAESRVPILLLTARSTEEDLLLGLDLGADDYLTKPYSPRELTARVRALLRRARP 122 Query: 122 SNNRAETGPI----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + V + + GE PL +E IL L A G+ + QI + Sbjct: 123 AEGERPPVLTVGDLVVDTARFEVRAAGEPVPLTGKEFAILALLAAEPGRVFTRAQIIDRV 182 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 +G FD+ V E V++H+ LR+KL + G V++ GY + Sbjct: 183 FG-FDQQVLERTVDAHVMNLRRKLDGGRPGTRHVETVYGRGYRL 225 >gi|255523050|ref|ZP_05390022.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|255513165|gb|EET89433.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] Length = 230 Score = 139 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 42/227 (18%), Positives = 88/227 (38%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + ++G + + + + + D+ ++ Sbjct: 4 ILIVDDDKEIVELIDFYMKNNGYNTYKAFNGKEALEIFQKEQIDIVILDIM--MPDLDGK 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAA 114 E+ R IR S P+I +S +D G DD + KP + E++ R Sbjct: 62 EVLRKIREKSSTPIIFLSAKGEDIDKIDGLFLGADDYLAKPFNTLELIARVKALLRRSTI 121 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + SN +++ + L E +++ + M NR K K Q++ Sbjct: 122 FNNTKEESNLTIINKHLKLDEESCKVYKDDVEIQLTSFEYKLICFFMKNRNKVFTKGQLY 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++G +E ++ +ISKLR+K+ + + + + R LGY Sbjct: 182 EEVWGQC-YLGDEKIIMVYISKLREKIEDNPKEPNFIKTIRGLGYIF 227 >gi|209558840|ref|YP_002285312.1| Response regulator CsrR [Streptococcus pyogenes NZ131] gi|209540041|gb|ACI60617.1| Response regulator CsrR [Streptococcus pyogenes NZ131] Length = 228 Score = 139 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 90/224 (40%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + +G + + D+ ++ L Sbjct: 5 ILIIEDEKNLARFVSLELQHEGYEVIVEGNGREGLKTALEKEFDLILLDLML--PEMDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R ++ ++ ++ S+ + D G DD + KP E+LAR+ AI+RR + Sbjct: 63 EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122 Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + R + L +RE +L LM N + + + ++ S Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +DEAVE NVV+ +I LR K+ + + R +GY I Sbjct: 183 VW-KYDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225 >gi|160902317|ref|YP_001567898.1| two component transcriptional regulator [Petrotoga mobilis SJ95] gi|160359961|gb|ABX31575.1| two component transcriptional regulator, winged helix family [Petrotoga mobilis SJ95] Length = 222 Score = 139 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 48/221 (21%), Positives = 97/221 (43%), Gaps = 6/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + ++G ++ E E + D+ ++ L + + Sbjct: 3 ILVVEDEEKLAYIIKRGLTEEGYCIDVVYDGEEAENYAKYSSYDLIILDIML--PKKDGI 60 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + + IR + P++ ++ S+ + DSG DD + KP E+ ARV ++ RR Sbjct: 61 TVCQNIRKENINTPILMLTAKDSVGDRVKGLDSGADDYLVKPFDFDELFARVRSLLRRES 120 Query: 121 VSNNRAETGPIRVFSD-GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + N + R+ + + L +E ILEY M N V +T + ++ Sbjct: 121 FTRNPVLKVGDLTLNTLTREVWMGEKKLKLTPKEYNILEYFMRNPKIVVTRTILEEKMWD 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + D NV++ +I +LRKK+ +K G +++ R GY + Sbjct: 181 I-DFEGNSNVIDVYIRRLRKKIGDKEG-KILETVRGAGYRL 219 >gi|116253342|ref|YP_769180.1| two-component response regulator transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] gi|115257990|emb|CAK09088.1| putative two-component response regulator transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] Length = 297 Score = 139 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 48/226 (21%), Positives = 92/226 (40%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + AL +G + + + + R D+ ++ L GE L Sbjct: 67 ILVVDDDPEIGRLVAALLSREGFDVRTAENGMELDDVLRKVRPDLIILDLML--PGEDGL 124 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R +R+ P++ ++ + + G DD V+KP RE+LARV A+ RR + Sbjct: 125 SICRRMRSEGAFPILMLTAKNDEMDRVVGLEVGADDYVSKPFGPRELLARVRALLRRTQS 184 Query: 122 SNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 +A + + + G L E +L + + +++ QI Sbjct: 185 QPFQAASRRYSFDRFVIDLDARQLTDEDGAPATLTSAEFDLLTCFVLRPRRVLSRDQILD 244 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 +G + V+ +S+LRKKL + G + + R GY + Sbjct: 245 WTHGRT-ADPLDRTVDILVSRLRKKLESLSPGNTLISTVRNGGYLL 289 >gi|29831247|ref|NP_825881.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|81838270|sp|Q82EB1|CSEB_STRAW RecName: Full=Transcriptional regulatory protein CseB gi|29608362|dbj|BAC72416.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 235 Score = 139 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 45/233 (19%), Positives = 95/233 (40%), Gaps = 22/233 (9%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 + ++D ++++ DG ++ + R D++ ++ + G + Sbjct: 8 LFVEDDDVIREATQLALERDGFAVTAMPDGLSGLEAFRANRPDIALLDVMV--PGLDGVS 65 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R IR S VP+I +S + ++G DD V KP ++AR+ A+ RR + Sbjct: 66 LCRRIRDESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRRFGHA 125 Query: 123 NNRAETGPIR---------------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167 + + ++G + G+ L E R+L + G Sbjct: 126 SGPNSRPAEDSSAPDGGVLTFGELEIDTEGMEVRRSGQPVALTPTEMRLLLEFSSAPGTV 185 Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +++ ++ ++ + + VV+ H+ +LR K+ G D +D+ R GY + Sbjct: 186 LSRDKLLERVWD-YGWGGDTRVVDVHVQRLRTKI----GQDRIDTVRGFGYKL 233 >gi|78485313|ref|YP_391238.1| two component transcriptional regulator [Thiomicrospira crunogena XCL-2] gi|78363599|gb|ABB41564.1| two component transcriptional regulator, winged helix family [Thiomicrospira crunogena XCL-2] Length = 226 Score = 139 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 50/222 (22%), Positives = 96/222 (43%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + D G ++ + D+ ++ L G+ L Sbjct: 6 ILIVEDEIKIANIVQEYLQDSGFKTVCIDNGSDVLSWVQNHPVDLILLDIML--PGKDGL 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + +R SQVP+I ++ + + G DD + KP RE++ARV A+ RR + Sbjct: 64 QVCKEVRTISQVPIIMLTAKVEEIDRILGLELGADDYICKPFSPRELVARVKALLRRSSL 123 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 T + + QG+ L E IL+ L + G+ +++ + +IY Sbjct: 124 RQENHSTEDWHMDEERYQVRYQGKTVNLSMVEFAILKLLSTSPGRIYSRSHLIGSIY-PD 182 Query: 182 DEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDW 222 + V + V+SHI KLR KL + + S +GY ++ Sbjct: 183 NRVVSDRTVDSHIKKLRHKLAEELTSKELIYSVYGVGYKFEF 224 >gi|154506657|ref|ZP_02043114.1| hypothetical protein RUMGNA_03924 [Ruminococcus gnavus ATCC 29149] gi|153793325|gb|EDN75748.1| hypothetical protein RUMGNA_03924 [Ruminococcus gnavus ATCC 29149] Length = 228 Score = 139 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 49/225 (21%), Positives = 85/225 (37%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + + + + E + ++ + + Sbjct: 3 LLLVEDDIEISQMLKSYLEAENYEVICAVDGEEACEKFEKESYSLVLLDLMI--PKISGM 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IR HS VP+I +S + G DD + KP E+LAR+ A RR Sbjct: 61 EVMQHIRTHSTVPIIIVSAKDTDADKTLGLGLGADDYITKPFSVTEVLARIKANIRRSTQ 120 Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + E + + E G L +E IL+ L+ N K K Q++S Sbjct: 121 YSKPEEQEVLMMGDLTINLTNYTVEKNGTKIDLTAKEFEILKLLVQNPQKVYTKEQMYSL 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 I+ +EN V HIS+LR K+ + + +GY + Sbjct: 181 IW-NDAYLGDENAVNVHISRLRNKIEEHPRSPKYIITVWGIGYKL 224 >gi|254250783|ref|ZP_04944102.1| two component transcriptional regulator [Burkholderia cenocepacia PC184] gi|124879917|gb|EAY67273.1| two component transcriptional regulator [Burkholderia cenocepacia PC184] Length = 282 Score = 139 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 49/228 (21%), Positives = 89/228 (39%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A + D D+ + L D ++ L G L Sbjct: 50 ILIVEDDADIADVLSLHLRDERYEVVHSADGAEGLRLLEQGNWDALILDLML--PGVDGL 107 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R RA P+I S S + + G DD + KP E++ARV A+ RR+ Sbjct: 108 EICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVD 167 Query: 121 VSNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + R+ V G L RE +L + + GK ++ + Sbjct: 168 ALARDSRIDAGTLDVAGLAIDPIAREASVDGARLDLTPREFDLLYFFARHPGKVFSRMDL 227 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 +A++G + E+ V +HI++LR K+ + + + GY + Sbjct: 228 LNAVWG-YQHEGYEHTVNTHINRLRAKIEADPAEPVRILTVWGRGYKL 274 >gi|108798410|ref|YP_638607.1| two component transcriptional regulator [Mycobacterium sp. MCS] gi|119867507|ref|YP_937459.1| two component transcriptional regulator [Mycobacterium sp. KMS] gi|108768829|gb|ABG07551.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. MCS] gi|119693596|gb|ABL90669.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. KMS] Length = 265 Score = 139 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 49/230 (21%), Positives = 93/230 (40%), Gaps = 15/230 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD A + + + + + + DV ++ L G LE Sbjct: 35 LVVDDEAPLAEVVASYLEREHFEAIVTGNGADAITIARELDPDVVILDIGL--PGIDGLE 92 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +R S ++ ++ + T+ G DD + KP RE++AR+ A+ RR ++ Sbjct: 93 VCRQLRTFSDAYVVMLTARDTEMDTILGLTVGADDYITKPFSPRELVARIRAMLRRPRIQ 152 Query: 123 N-----------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 G + + R+ + E L R E ILE L A G +++ Sbjct: 153 QSAAAATEREAVPPRRFGALIIDVAAREVHIDDEPILLTRTEFDILEALSARPGIVLSRR 212 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220 Q+ + E++V+ HI LR+KL + + + R +GY + Sbjct: 213 QLLEIVRDGP-WVGNEHLVDVHIGHLRRKLGDDAANPRYITTVRGVGYRM 261 >gi|310778503|ref|YP_003966836.1| two component transcriptional regulator, winged helix family [Ilyobacter polytropus DSM 2926] gi|309747826|gb|ADO82488.1| two component transcriptional regulator, winged helix family [Ilyobacter polytropus DSM 2926] Length = 219 Score = 139 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 45/222 (20%), Positives = 94/222 (42%), Gaps = 9/222 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L +D ++ +G + E + + D+ ++ Sbjct: 5 ILLAEDDWKLRRIASDFLKKEGYLVIEAEDGEQAIEFFFNNKIDLVILDIM--MPKLDGW 62 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ R IR VP+I ++ L + D+ V KP+ + ++A+V A+ RR Sbjct: 63 DVCREIRSERKNVPIIMLTAKGDEDDILKGYKLKTDEYVTKPVSLKILMAKVKALLRRNN 122 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + I + GE+ L RE +L Y + N+G +++ +I ++++G Sbjct: 123 NDSIINMGKLIIND-SSHVVTLDGEILELSPREYEMLLYFVINKGIALSREKIITSLWG- 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D + V+S I ++RKKL G + +++ R +GY + Sbjct: 181 YDYEGDRRAVDSQIKRIRKKL----GGEYIETVRGVGYKFEV 218 >gi|282852927|ref|ZP_06262268.1| putative regulatory protein VanR [Lactobacillus gasseri 224-1] gi|282556035|gb|EFB61656.1| putative regulatory protein VanR [Lactobacillus gasseri 224-1] Length = 228 Score = 139 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 42/227 (18%), Positives = 96/227 (42%), Gaps = 9/227 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + ++G S + S+ +++ + ++ + Sbjct: 3 ILVVDDDKEIVELLSIYLKNEGYEPIAAYSGKEALTKLSTN-PEIALMILDIMMPQMSGI 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + +R S++P++ +S S + +G DD V KP + E++ARV ++ RR + Sbjct: 62 EVIKEVRKDSEIPILVVSAKTSDMDKIQGLITGADDYVVKPFNPLEVMARVRSLLRRSQK 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQG------EVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + V + + +V L E IL L ++ + + +IF Sbjct: 122 EVKDDKPDVLEVGPLVINKDSHEVKTLTGKVIQLTALEFGILYILASHPNRVFSADEIFE 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 ++ + V V H+S LR K++ G + + + +GY ++ Sbjct: 182 RVW-QQESVVSAKTVMVHVSHLRDKIQKATDGEEVIQTVWGVGYKVE 227 >gi|227496786|ref|ZP_03927057.1| response regulator [Actinomyces urogenitalis DSM 15434] gi|226833702|gb|EEH66085.1| response regulator [Actinomyces urogenitalis DSM 15434] Length = 234 Score = 139 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 49/230 (21%), Positives = 91/230 (39%), Gaps = 14/230 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS-------AREDVSAIEAFLI 54 +L++D ++ DG + L D+ ++ L Sbjct: 4 ILLVEDEENYREPLAFNLRRDGYDVVEAEDGAVAVELFEEAGRPGGGEPIDLVLLDLML- 62 Query: 55 GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA- 113 E+ R IR S VP+I ++ S + + G DD V KP +RE++ARV Sbjct: 63 -PRLSGTEVCRRIRRSSNVPVIMLTAKDSEVDKIVGLEIGADDYVTKPYSYRELVARVHA 121 Query: 114 --AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 R + + E G + + + + V GE +P RE +LE + N + + + Sbjct: 122 VLRRTREEEPAEPVLEAGRVSMDVERHEVRVDGEPIAMPLREFELLELFLRNADRVLTRG 181 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 QI ++G + ++ H+ ++R K+ + + R LGY + Sbjct: 182 QIIDRVWGAG-YVGDTKTLDVHVKRIRAKIEREPSDPTLLVTVRGLGYKL 230 >gi|188578983|ref|YP_001915912.1| two-component system regulatory protein (response regulator) required for AvrXa21 activity R2 (raxR2) [Xanthomonas oryzae pv. oryzae PXO99A] gi|188523435|gb|ACD61380.1| two-component system regulatory protein (response regulator) required for AvrXa21 activity R2 (raxR2) [Xanthomonas oryzae pv. oryzae PXO99A] Length = 223 Score = 139 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 59/218 (27%), Positives = 100/218 (45%), Gaps = 5/218 (2%) Query: 5 IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVLEL 63 ++D A +++ A +G +++ E ++ DV I+ L G ++++ Sbjct: 2 VEDEAPLRETLAARLKREGFAVDAAQDGEEGLYMGREVPFDVGIIDLGLPKMSGMELIKA 61 Query: 64 PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLKVS 122 R + P++ ++ S Q ++ G DD + KP H E+LARV A+ R S Sbjct: 62 LR--DEGKKFPVLILTARSSWQDKVEGLKQGADDYLVKPFHVEELLARVNALLRRAAGWS 119 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 E GP+ + + V G L E ++LEYLM + G+ V+K + IY D Sbjct: 120 KPTLECGPVALDLAAQTVSVNGANVDLTSYEYKVLEYLMMHAGELVSKADLTEHIY-QQD 178 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + NV+E I +LRKKL P+++ R GY Sbjct: 179 FDRDSNVLEVFIGRLRKKLDPDGELKPIETVRGRGYRF 216 >gi|260061608|ref|YP_003194688.1| response regulator DrrA [Robiginitalea biformata HTCC2501] gi|88785740|gb|EAR16909.1| response regulator DrrA [Robiginitalea biformata HTCC2501] Length = 228 Score = 139 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 37/224 (16%), Positives = 84/224 (37%), Gaps = 10/224 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 +L+DD + + +G + + + ++ + G + Sbjct: 8 ILLVDDEPDILEILSYNLTSEGYQVYTARNGAEGVEKARKKNPHLIILDVMMPEMDGIEA 67 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIY 116 E+ R + + ++ + + FD+G DD + KPI + +++V + Sbjct: 68 CEIIRKTKGLQDSIIAFLTARNEDYSQVAGFDAGADDYITKPIKPKVFISKVKALLRRLK 127 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + + G + + + +GE LPR+E +L L + K + I Sbjct: 128 NQEGSGEDILKVGKLVINREEYKVVNKGEELTLPRKEFELLALLASKPDKVFKREVILDK 187 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + V ++ HI KLR+K+ + + +GY Sbjct: 188 VWGQ-EVVVGGRTIDVHIRKLREKIGES----HFKTVKGVGYKF 226 >gi|290352153|dbj|BAI78787.1| putative two-component response regulator [Streptococcus pyogenes] Length = 228 Score = 139 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 46/224 (20%), Positives = 89/224 (39%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + +G + + D+ ++ L Sbjct: 5 ILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLML--PEMDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R ++ ++ ++ S+ + D G DD + KP E+LAR+ AI+R + Sbjct: 63 EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRSQDI 122 Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + R + L +RE +L LM N + + + ++ S Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +DEAVE NVV+ +I LR K+ + + R +GY I Sbjct: 183 VW-KYDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225 >gi|317128046|ref|YP_004094328.1| two component transcriptional regulator, winged helix family [Bacillus cellulosilyticus DSM 2522] gi|315472994|gb|ADU29597.1| two component transcriptional regulator, winged helix family [Bacillus cellulosilyticus DSM 2522] Length = 228 Score = 139 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 42/220 (19%), Positives = 90/220 (40%), Gaps = 5/220 (2%) Query: 4 LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63 +++D ++++ +G + E + ++ L E+ Sbjct: 9 VVEDNEMIRNLVEIYLRKEGYDVITAVDGEEAKEQFLQYSPCAVILDLML--PKLSGEEV 66 Query: 64 PRIIRAHSQV--PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 R IR+ + +I ++ S ++ ++ G DD V KP E++ARV A+ RR Sbjct: 67 CRWIRSQKRNEISIIMLTAKISAESKINGLRIGADDYVIKPFSPEELMARVEAVLRRSGQ 126 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + + + G+ L + E +L Y M N +++ Q+ I+ Sbjct: 127 FCQKISLNGLIIQPRKGVVLLNGKPVNLTKYEFNLLFYFMENPNIVLSREQLIQQIHPHT 186 Query: 182 DEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 D + + +++HI KLR+K+ + + + R +GY Sbjct: 187 DVDILDRTIDAHIKKLREKIEDVPSKPKKIQTVRGMGYRF 226 >gi|271963089|ref|YP_003337285.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270506264|gb|ACZ84542.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 241 Score = 139 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 52/224 (23%), Positives = 95/224 (42%), Gaps = 13/224 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + +G ++ E + + DV ++ L G LE Sbjct: 22 LVVEDDETIARAVRHRLAAEGFDVQVVGDGEGALAAYARSGPDVVVLDRLL--PGLDGLE 79 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------AIY 116 + R ++A VP++ ++ L G DD + KP RE++ARV Sbjct: 80 VCRRMQAARPVPVLMLTALGEETDLLVGLGVGADDYMTKPFSMRELVARVHALLRRVERA 139 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 +L V++ G + + + R V+G L R E +L L G+ + ++ + Sbjct: 140 SQLAVADPVIRAGDVEIDTAERRVYVRGAEAQLTRTEFDLLCRLAERPGQVFERERLLND 199 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I+G F EA V+SH+ LR+KL G V + +GY++ Sbjct: 200 IWG-FSEAAATRTVDSHVRALRRKL----GPGVVRTVHGVGYAL 238 >gi|229075160|ref|ZP_04208154.1| Two-component response regulator [Bacillus cereus Rock4-18] gi|228707937|gb|EEL60116.1| Two-component response regulator [Bacillus cereus Rock4-18] Length = 228 Score = 139 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 47/226 (20%), Positives = 90/226 (39%), Gaps = 11/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++++ ++G ++ + + + ++ L Sbjct: 5 ILIVEDEDILREIMKDYLLNEGYNVLEAIDGKEALSIFEEYEVHLIILDIML--PELDGW 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR------EILARVAAI 115 + R IR S VP+I ++ TL F+ G DD V KP + L Sbjct: 63 AVCRRIRKKSNVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLMESRYS 122 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 ++ + + I V R + GE L E IL Y M N+G +++ Q+ + Sbjct: 123 SAVKVLTADTLTSSGIHVHFPSRTVTIDGEDISLTHTEFEILTYFMQNQGIVISREQLIN 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 I+G ++ A ++ + SHI LR KL K + + GY + Sbjct: 183 KIWG-YEFAGDDRTINSHIRNLRHKLGQKAA--CIVTVVRAGYKFE 225 >gi|297201439|ref|ZP_06918836.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] gi|197713846|gb|EDY57880.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] Length = 234 Score = 139 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 45/232 (19%), Positives = 96/232 (41%), Gaps = 21/232 (9%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 + ++D ++++ DG ++ + R D++ ++ + G + Sbjct: 8 LFVEDDDVIREATQLALERDGFAVTAMPDGLSGLEAFRADRPDIALLDVMV--PGLDGVS 65 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R IR S VP+I +S + ++G DD V KP ++AR+ A+ RR + Sbjct: 66 LCRRIRDESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRRFGHA 125 Query: 123 NNRAE--------------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 G + + ++G + G+ L E R+L + G + Sbjct: 126 GGTDRGEVSADAAAGGVLTFGELEIDTEGMEVRRAGQPVALTPTEMRLLLEFSSAPGTVL 185 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ ++ ++ + + VV+ H+ +LR K+ G D +++ R GY + Sbjct: 186 SRDKLLERVWD-YGWGGDTRVVDVHVQRLRTKI----GQDRIETVRGFGYKL 232 >gi|114046179|ref|YP_736729.1| two component transcriptional regulator [Shewanella sp. MR-7] gi|113887621|gb|ABI41672.1| two component transcriptional regulator, winged helix family [Shewanella sp. MR-7] Length = 253 Score = 139 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 91/224 (40%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + + + SL L + R D+ ++ L L Sbjct: 23 ILLVEDEQDLAQMIMVNLTALNFRVFHAASLHQANALLQAKRIDLVLLDRML--PDGDGL 80 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117 L + +R Q+P++ ++ T+ +SG DD + KP E+ AR + Sbjct: 81 LLCQQLRNDGQQMPVMLLTARDGEADTVLGLESGADDYMTKPFSVLELRARTKALLRRHL 140 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + E +R+ D R+ L +E +L +L + + ++TQ+ A+ Sbjct: 141 SAAPTRQLIEFEGLRIDLDSREVIAFDNPLSLTAKEFDLLTFLARHPQQVFSRTQLLDAV 200 Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 +G + E+ V SHI++LR KL + + V + +GY Sbjct: 201 WG-YRFDGFEHTVNSHINRLRGKLAHIPGSRELVQTVWGVGYKF 243 >gi|332706802|ref|ZP_08426863.1| two-component response regulator, CheY subfamily [Lyngbya majuscula 3L] gi|332354686|gb|EGJ34165.1| two-component response regulator, CheY subfamily [Lyngbya majuscula 3L] Length = 225 Score = 139 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 45/222 (20%), Positives = 95/222 (42%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + D D ++ + + + L S D+ ++ L + Sbjct: 3 ILLVEDDQRITDALAEDLTDQHYVVDVAHDGQIGKELVESFSYDLILLDVML--PKMDGI 60 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119 L R +R+ P++ ++ ++ + D+G DD + KP E+ AR+ A + R Sbjct: 61 TLCRKLRSQGDLTPILMLTARDTISDKIVGLDAGADDYLVKPFDLGELSARIRALLRRGN 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 E +R+ + + + L +E +LE+ + + + ++ QI ++ Sbjct: 121 TTLPPVLEWDSLRLDPSTCEVFYEDRLLSLSPKEYALLEFFLRHPRRVFSRAQILENLWS 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220 F+ EE V++HI LR+KL D +++ LGY + Sbjct: 181 -FERLPEEATVKAHIRGLRQKLEAAGAPSDLIETVYGLGYRL 221 >gi|326384016|ref|ZP_08205699.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395] gi|326197176|gb|EGD54367.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395] Length = 235 Score = 139 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 46/224 (20%), Positives = 92/224 (41%), Gaps = 10/224 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD +++ G + + + + D+ ++ G Sbjct: 11 LVVDDEENIRELLSVSLKFQGYEVVAAADGPRALDVVRTFKPDILVLDVM--MPGMDGFG 68 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116 L R +RA P + +S S++ ++ G DD V KP E++AR + + Sbjct: 69 LLRRLRADGIDAPALFLSARDSVEDKVNGLTIGGDDYVTKPFSLEEVVARLAVLLRRSGF 128 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 R + + + + GE+ L E +L Y M N G ++K +I Sbjct: 129 GVGDEEPTRIVFSDLELDDETHEVFKNGELVSLSPTEFTLLRYFMVNAGTVLSKPRILDH 188 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +D + NVVES++S LR+K+ + + + R +GY + Sbjct: 189 VWS-YDFGGDVNVVESYVSYLRRKV-DTGPKRLIHTLRGVGYVM 230 >gi|290352123|dbj|BAI78772.1| putative two-component response regulator [Streptococcus pyogenes] Length = 228 Score = 139 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 46/224 (20%), Positives = 89/224 (39%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + +G + + D+ ++ L Sbjct: 5 ILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLML--PEMDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R ++ ++ ++ S+ + D G DD + KP E+LAR+ AI+ R + Sbjct: 63 EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFSRQDI 122 Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + R + L +RE +L LM N + + + ++ S Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +DEAVE NVV+ +I LR K+ + + R +GY I Sbjct: 183 VW-KYDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225 >gi|253583816|ref|ZP_04861014.1| OmpR family response regulator [Fusobacterium varium ATCC 27725] gi|251834388|gb|EES62951.1| OmpR family response regulator [Fusobacterium varium ATCC 27725] Length = 228 Score = 139 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 41/221 (18%), Positives = 91/221 (41%), Gaps = 6/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D ++ + S++ E + D+ ++ Sbjct: 4 ILIIEDEKKIRRYLQLELEHEKYSVDTAQDGEEGIEKFKNNFYDIILLDLM--MPKFSGE 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119 E+ +IIR S +P+I ++ ++ D G DD + KP E+ AR+ + Sbjct: 62 EVCKIIRKTSNIPIIVLTAKDHTLNKVELLDMGADDYLTKPFEIEELFARIRVALRNKSN 121 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + +++ + L + E + YL+ N+ V++ +I + ++G Sbjct: 122 FTNTDYIHYDILKLDLKTNSLYKNEKEISLTKTEYNLFHYLLLNKELVVSREKILNEVWG 181 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D EE +V+ +I+ LRKK+ + + + R GY + Sbjct: 182 -YDYMGEEKIVDVYINALRKKI-DYDENKFIHTVRGFGYVL 220 >gi|228928237|ref|ZP_04091278.1| hypothetical protein bthur0010_29360 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228946799|ref|ZP_04109104.1| hypothetical protein bthur0007_29360 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229122717|ref|ZP_04251927.1| hypothetical protein bcere0016_30100 [Bacillus cereus 95/8201] gi|228660768|gb|EEL16398.1| hypothetical protein bcere0016_30100 [Bacillus cereus 95/8201] gi|228812923|gb|EEM59239.1| hypothetical protein bthur0007_29360 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228831284|gb|EEM76880.1| hypothetical protein bthur0010_29360 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 245 Score = 139 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 46/221 (20%), Positives = 90/221 (40%), Gaps = 7/221 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + + G ++ + + + ++ L G Sbjct: 30 ILLVEDDEHICNAVKVFLSGAGYKVDACFNGDEAHTKFYDNTYQLVILDILL--PGMNGH 87 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL R R + P++ ++ + + FD+ DD V KP + +L RV A+ RR Sbjct: 88 ELLREFRKLNNTPVLMMTALSDDENQIRAFDAEADDYVTKPFKIQLLLKRVEALLRRSGA 147 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 G + + + E L +E IL L+ N G+ ++ I S ++G + Sbjct: 148 VAKELHYGKLTILPEDFKVFYDDEELLLTLKEFEILMLLVQNNGRTLSHEVILSRVWG-Y 206 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 D + + V +HI LR KL + + + + R +GY ++ Sbjct: 207 DFDGDGSTVHTHIKNLRAKLPD----NIIKTVRGVGYRLEE 243 >gi|189218173|ref|YP_001938815.1| phosphate regulon transcriptional regulatory protein phoB [Methylacidiphilum infernorum V4] gi|189185031|gb|ACD82216.1| Phosphate regulon transcriptional regulatory protein phoB [Methylacidiphilum infernorum V4] Length = 258 Score = 139 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 36/224 (16%), Positives = 81/224 (36%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++++D V G G + D+ ++ + G V Sbjct: 34 ILVVEDEEDVLSLICLHLNSQGFETIGAKEGMEALRIARKELPDLIVLDLMIPEFSGLDV 93 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIY 116 + + +P++ ++ + + G DD + KP R I + + Sbjct: 94 CKYLKKDPDTLSIPIVILTAKSDPSDRILGLELGADDYIAKPFSPRELILRIQSILRRRL 153 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 ++ + IR+ + + + L E R+L L+ G ++ Q+ Sbjct: 154 EDNPLAEQIQQEDGIRLDPIDKVAYFKKKKIELTPIEFRLLSTLVEREGAVQSREQLLKE 213 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G +D+ V+ +++HI +LR KL + + R +GY Sbjct: 214 VWG-YDKTVDTRTIDTHIRRLRDKLGRAS--QYLRTVRGIGYRF 254 >gi|189010643|ref|ZP_02808375.2| heavy metal response regulator [Escherichia coli O157:H7 str. EC4076] gi|189403619|ref|ZP_02796631.2| heavy metal response regulator [Escherichia coli O157:H7 str. EC4486] gi|189404363|ref|ZP_02788923.2| heavy metal response regulator [Escherichia coli O157:H7 str. EC4501] gi|208810230|ref|ZP_03252106.1| heavy metal response regulator [Escherichia coli O157:H7 str. EC4206] gi|208816557|ref|ZP_03257677.1| heavy metal response regulator [Escherichia coli O157:H7 str. EC4045] gi|208819204|ref|ZP_03259524.1| heavy metal response regulator [Escherichia coli O157:H7 str. EC4042] gi|209398847|ref|YP_002271082.1| heavy metal response regulator [Escherichia coli O157:H7 str. EC4115] gi|217328961|ref|ZP_03445042.1| heavy metal response regulator [Escherichia coli O157:H7 str. TW14588] gi|188999283|gb|EDU68269.1| heavy metal response regulator [Escherichia coli O157:H7 str. EC4076] gi|189359672|gb|EDU78091.1| heavy metal response regulator [Escherichia coli O157:H7 str. EC4486] gi|189366025|gb|EDU84441.1| heavy metal response regulator [Escherichia coli O157:H7 str. EC4501] gi|208724746|gb|EDZ74453.1| heavy metal response regulator [Escherichia coli O157:H7 str. EC4206] gi|208730900|gb|EDZ79589.1| heavy metal response regulator [Escherichia coli O157:H7 str. EC4045] gi|208739327|gb|EDZ87009.1| heavy metal response regulator [Escherichia coli O157:H7 str. EC4042] gi|209160247|gb|ACI37680.1| heavy metal response regulator [Escherichia coli O157:H7 str. EC4115] gi|217318308|gb|EEC26735.1| heavy metal response regulator [Escherichia coli O157:H7 str. TW14588] gi|326342377|gb|EGD66158.1| Putative two-component system response regulator YedW [Escherichia coli O157:H7 str. 1044] Length = 233 Score = 139 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 50/219 (22%), Positives = 97/219 (44%), Gaps = 3/219 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D ++ + G ++ + +L + ++ L G Sbjct: 13 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIML--PGMDGW 70 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + +R Q P+I ++ S+ + DSG +D + KP E+LARV A R+ Sbjct: 71 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 130 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 N+ E +R+ S + L R+E ++L L + G+ + +T I S I+G+ Sbjct: 131 LNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 189 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + N V+ I +LR K+ + + + R +GYS Sbjct: 190 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 228 >gi|302870967|ref|YP_003839603.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor obsidiansis OB47] gi|302573826|gb|ADL41617.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor obsidiansis OB47] Length = 224 Score = 139 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 47/221 (21%), Positives = 100/221 (45%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D+ + + G S + + +S D+ ++ L + Sbjct: 3 ILIVEDQESLAHTIARRLQEVGYSTDITFDGQEGLHFATSTSYDLIILDIML--PKIDGI 60 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L ++IR Q P++ ++ S++ + D+G DD + KP E+LAR+ A+ RR Sbjct: 61 NLLKLIRLKGIQTPVLCLTAKDSIEDRVIGLDAGADDYLVKPFSFDELLARIRALLRRYA 120 Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + ++ G++ L +E ILEYL N+G+ + ++QI ++ Sbjct: 121 QTREPIIKVKDLVIDTNSHKVTRAGKLIELTSKEYSILEYLARNKGRVLTRSQIAEHVW- 179 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D N+V+ +I LR+K+ + + + R +GY + Sbjct: 180 NYDFEGTSNIVDVYIRYLRRKIDDGFPEKLIYTIRGVGYML 220 >gi|284053035|ref|ZP_06383245.1| two-component response regulator [Arthrospira platensis str. Paraca] gi|291566312|dbj|BAI88584.1| two-component response regulator [Arthrospira platensis NIES-39] Length = 628 Score = 139 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 48/225 (21%), Positives = 104/225 (46%), Gaps = 6/225 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + D +A+ ++ N + S+ D+ ++ L + Sbjct: 3 ILLVEDDLHLADALVAMLTSQKYQVDVVNDGQQGWEYIQSSSYDLVLLDIELPL--LDGI 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119 L +R+H+ P++ ++ + Q + D+G DD + KP+ E+ AR+ A + R Sbjct: 61 SLCHQLRSHNFQVPILLLTARNNQQDKVKGLDAGADDYMVKPLDIAELSARIRALLRRSS 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + +++ + + + D G+ + +E +LE LM +R + + +I ++ Sbjct: 121 EGTSSVFTYEKMVLDTSTCDVTYNGKPIKVTPKEYGLLELLMGDRQRTYSIDKILDKLW- 179 Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223 FD+ N V +HI LR+KL+ G + +++ LGY ++ N Sbjct: 180 TFDDPPSANTVRAHIKGLRQKLKAAGAGAEFIETVYGLGYRLNQN 224 Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 17/102 (16%), Positives = 37/102 (36%), Gaps = 1/102 (0%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61 +++DD + L G+ S+ D+ ++ + G ++ Sbjct: 499 MIVDDDPQMLAAIQTLLQPWGIQTITLGDPRQFWKTLESSHPDLLVLDIEMPHLNGIELC 558 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI 103 ++ R +P+I ++ Q F +G DD + KP Sbjct: 559 QIVRNDPRWRGIPVIFVTAQTDRQIREQVFQAGADDYLTKPF 600 >gi|242373720|ref|ZP_04819294.1| response regulator [Staphylococcus epidermidis M23864:W1] gi|242348688|gb|EES40290.1| response regulator [Staphylococcus epidermidis M23864:W1] Length = 219 Score = 139 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 48/219 (21%), Positives = 85/219 (38%), Gaps = 4/219 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + +++ N + D+ ++ L L Sbjct: 4 ILIVEDEQNLARFIELELTHENYNVDIENDGRTGLDKALNKSYDLIILDLML--PNINGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR P+I I+ + D G DD + KP E+ R + Sbjct: 62 EICRQIRQEYSTPIIIITAKGETYDKVAGLDYGADDYIVKPFDIEEL-LARIRAILRRQP 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + I + D V G L + E +L L NR + + QI ++G F Sbjct: 121 QKDVIDINGIIIDKDAFKVTVDGTQLELTKTEYDLLYVLAENRNHVMQREQILDHVWG-F 179 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + VE NVV+ +I LR KL+ +++ R +GY I Sbjct: 180 NSEVETNVVDVYIRYLRNKLKPFNKEKSIETVRGVGYVI 218 >gi|227501322|ref|ZP_03931371.1| DNA-binding response regulator [Anaerococcus tetradius ATCC 35098] gi|227216555|gb|EEI81961.1| DNA-binding response regulator [Anaerococcus tetradius ATCC 35098] Length = 219 Score = 139 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 46/221 (20%), Positives = 90/221 (40%), Gaps = 6/221 (2%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 M +++D +++ + G ++ F D+ ++ L K Sbjct: 1 MIYVVEDDKSIRNLLEYALREKGYEMKSFEDGSEIVREVKDKPCDLLILDIMLPEK--DG 58 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-REILARVAAIYRRL 119 + + + IR S +P+I ++ + D G DD + KP + A + R Sbjct: 59 ISILKEIRQFSNLPIIMLTAKSDEFDKVMGLDLGADDYITKPFSILEFLSRVKAVLRRSN 118 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 K + +R+ + R +V+GE L +E +L ++N G +++ I+G Sbjct: 119 KKDTDHISYKEVRLNTKKRSVKVKGEKVDLTYKEFEMLLLFLSNIGNVISRDDFLLKIWG 178 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D E V+ HI+ LR KL+ +++ R LGY Sbjct: 179 -YDYEGETRTVDVHIASLRAKLKESG--KYIETVRNLGYRF 216 >gi|189438905|ref|YP_001953986.1| response regulator [Bifidobacterium longum DJO10A] gi|296454575|ref|YP_003661718.1| winged helix family two component transcriptional regulator [Bifidobacterium longum subsp. longum JDM301] gi|32700051|gb|AAP86676.1| response regulator [Bifidobacterium longum subsp. infantis] gi|189427340|gb|ACD97488.1| Response regulator [Bifidobacterium longum DJO10A] gi|296184006|gb|ADH00888.1| two component transcriptional regulator, winged helix family [Bifidobacterium longum subsp. longum JDM301] Length = 240 Score = 139 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 50/235 (21%), Positives = 95/235 (40%), Gaps = 19/235 (8%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++DD + + + ++G + + D+ ++ L G Sbjct: 4 IFIVDDDQAIGEMLSLVLENEGFQTVTCLDGLRAVEMFPIVKPDLILLDVML--PGLDGT 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IRA S VP+I ++ + ++G DD V KP E+LAR+ A +R K Sbjct: 62 EVARRIRATSNVPIIMLTAKSDTLDVVAGLEAGADDYVPKPFKVAELLARIRARFRIAKP 121 Query: 122 ---------------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166 + N E GPI + G+ L E +L L A G+ Sbjct: 122 AAEDGATGGASGGNANVNHLERGPIVIDRLEHTATKDGKDLNLTPMEFELLFMLAAAAGE 181 Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 ++++ + ++G ++ + + +V H+ +LR K+ + V + R +GY Sbjct: 182 AISRSSLLKNVWG-YENSGDTRLVNVHVQRLRAKVEDDPENPQIVQTVRGIGYKF 235 >gi|310827934|ref|YP_003960291.1| two component transcriptional regulator [Eubacterium limosum KIST612] gi|308739668|gb|ADO37328.1| two component transcriptional regulator [Eubacterium limosum KIST612] Length = 227 Score = 139 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 42/224 (18%), Positives = 88/224 (39%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + + L G + + S + + ++ L G Sbjct: 6 ILIVEDDVNISNMLVDLLTHSGYTADTAYSGTEALFCLEKKSYALILLDLML--PGMSGE 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117 E+ + +R S +I +S T + +G DD + KP ++ I A + Sbjct: 64 EVLKSLRQTSDTLVIAVSAKDDSPTKISLLKNGADDYITKPFNNEELLARIEALLRRNSG 123 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 +S + + + ++G+ L +RE +ILE LM N + +K I+ + Sbjct: 124 NTSLSGKTLTYKGLTLNPSTYEVYLKGQPLSLTKREYKILELLMQNPQRVFSKNVIYETV 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + E+N + HIS LR+KL + + +G+ + Sbjct: 184 W-EDLFLGEDNAINVHISNLRQKLAKIDPDEAYIQTVWGIGFKM 226 >gi|326789158|ref|YP_004306979.1| transcriptional regulator [Clostridium lentocellum DSM 5427] gi|326539922|gb|ADZ81781.1| two component transcriptional regulator, winged helix family [Clostridium lentocellum DSM 5427] Length = 237 Score = 139 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 42/223 (18%), Positives = 89/223 (39%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + +G + + + D+ ++ L + Sbjct: 13 ILIIEDEVKIARFLQLELQHEGYDVNMSHDGREGLNMALENNYDLLILDVML--PSLNGM 70 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR S +P+I ++ + + D G D + KP E+LAR+ +++ Sbjct: 71 EVLRRIRQVSSLPVIMLTAKDDVMDKVMGLDLGAQDYITKPFAIEELLARIRVLFKLKAT 130 Query: 122 SNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + + L ++E +L++LM N+ + + QI + Sbjct: 131 TPTATPEVLKCGQLTLDPERYEVSYNNIPLALTKKEFELLQFLMLNKNLLITREQILEKV 190 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G +D + NVV+ +I LR K+ + + + R +GY I Sbjct: 191 WG-YDYLGDTNVVDVYIRYLRNKIDQRFEDKLIYTVRGMGYQI 232 >gi|83945597|ref|ZP_00957943.1| hypothetical protein OA2633_14905 [Oceanicaulis alexandrii HTCC2633] gi|83850963|gb|EAP88822.1| hypothetical protein OA2633_14905 [Oceanicaulis alexandrii HTCC2633] Length = 228 Score = 139 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 49/220 (22%), Positives = 100/220 (45%), Gaps = 9/220 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D ++ + G +++ E +L + D ++ L + Sbjct: 4 LIVEDDPDLRRQLSDVLTHSGYAVDTAADGEDGLFLGETEPYDAIVLDLGL--PKLDGVT 61 Query: 63 LP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120 + R A P++ ++ + FD+G DD + KP H E+LAR+ A R Sbjct: 62 VLERWRDAGMSAPVLILTARDRWSEKVAGFDAGADDYLTKPFHPEELLARLRALTRRAAG 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 S++ G + + + G + ++ L E R+L YLM +R + +++T++ IY Sbjct: 122 HSSSTLMCGDLSLDTRGSRVFLGDQLIKLTSHEFRMLSYLMHHRDRVISRTELVEHIYDQ 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D + N +E + +LRKK+ G + +++ R LGY + Sbjct: 182 -DFDRDSNTIEVFVGRLRKKI----GSNRIETVRGLGYRL 216 >gi|323484833|ref|ZP_08090189.1| winged helix family Two component transcriptional regulator [Clostridium symbiosum WAL-14163] gi|323693799|ref|ZP_08107993.1| winged helix family Two component transcriptional regulator [Clostridium symbiosum WAL-14673] gi|323401829|gb|EGA94171.1| winged helix family Two component transcriptional regulator [Clostridium symbiosum WAL-14163] gi|323502146|gb|EGB18014.1| winged helix family Two component transcriptional regulator [Clostridium symbiosum WAL-14673] Length = 233 Score = 139 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 37/225 (16%), Positives = 81/225 (36%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L+DD + + A G + L + + ++ L Sbjct: 7 ILLVDDEEKIVEVLQAYLEKAGYEVLCAYDGAAAMELFRNNDISLILLDLML--PDIMGE 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R++RA S+VP+I ++ + G DD + KP R ++A+ A+ RR++ Sbjct: 65 EICRMVRAVSRVPIIMLTAKTEENDLIKGLRLGADDYIFKPFSPRTVVAKAEAVLRRVES 124 Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + D + G+ L E +IL + + + Q+ + Sbjct: 125 DKLISVPVSYNQGSLVIDFQNGDVKAGGQDAGLTPTEYKILATMAKAPNRTFTREQLITY 184 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220 + + ++++I +R K+ + + +GY Sbjct: 185 ALD-DNFDGYDRSIDTYIKSIRSKIEEDRKNPVFIVTVHGIGYRF 228 >gi|300024440|ref|YP_003757051.1| two component transcriptional regulator, winged helix family [Hyphomicrobium denitrificans ATCC 51888] gi|299526261|gb|ADJ24730.1| two component transcriptional regulator, winged helix family [Hyphomicrobium denitrificans ATCC 51888] Length = 230 Score = 139 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 40/223 (17%), Positives = 88/223 (39%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + G + + + ++ D+ ++ L Sbjct: 6 ILVVDDEPQILRFLKPSLTAAGYEVVVATTGKEALKAAATQSPDIILLDLGL--PDMDGK 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 ++ R +R S+ P++ +S + FD G DD VNKP E+ AR+ + Sbjct: 64 DVIRELRGWSKTPILVLSARDRESEKIAAFDLGADDYVNKPFGIGELTARLRTALRHAAQ 123 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++G + V + G L +E +L L+ N G+ + Q+ +A++ Sbjct: 124 QASEQTHLKSGALEVDVLAHTVTLNGAAVKLTPKEFDLLAILVRNAGRLLTHRQLLAAVW 183 Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 G + + + +LR+KL+ + + ++ +GY + Sbjct: 184 GAAHTE-DLQYLRVFVGQLRQKLKASPDAPEFIVTEPGIGYRL 225 >gi|164687352|ref|ZP_02211380.1| hypothetical protein CLOBAR_00993 [Clostridium bartlettii DSM 16795] gi|164603776|gb|EDQ97241.1| hypothetical protein CLOBAR_00993 [Clostridium bartlettii DSM 16795] Length = 226 Score = 139 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 49/224 (21%), Positives = 97/224 (43%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++IDD + + ++G ++ + D+ ++ L G + Sbjct: 4 ILIIDDEIHIVELLKFNLENNGYKVDYSYDGFDGYLKTKEFQPDLILLDWMLPNISGIDL 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L+ R Q+P+I ++ + L+ + G DD + KP +E+LAR+ ++ RR K Sbjct: 64 LKKIRSDETLEQIPVIMLTAKNMEEDKLEGLEDGADDYITKPFSVKEVLARITSVLRRYK 123 Query: 121 VSNNRAETGPIRVFSD----GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 ++N G+ L +E +IL+ L+ N+G + +T + Sbjct: 124 YTSNEKIEVLKADDIQVNVNKHIVTKNGQEIELTLKEFQILKLLIENKGNVLTRTFLLDK 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I+G +D E ++ HI LRKK+ + +++ R +GY I Sbjct: 184 IWG-YDYYGETRTLDVHIRHLRKKIGDN-DSKLIETVRGVGYKI 225 >gi|221201978|ref|ZP_03575014.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia multivorans CGD2M] gi|221204892|ref|ZP_03577909.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia multivorans CGD2] gi|221213870|ref|ZP_03586843.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia multivorans CGD1] gi|221166047|gb|EED98520.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia multivorans CGD1] gi|221175749|gb|EEE08179.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia multivorans CGD2] gi|221178061|gb|EEE10472.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia multivorans CGD2M] Length = 235 Score = 139 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 44/226 (19%), Positives = 81/226 (35%), Gaps = 8/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++++D + + G + E + L S D+ ++ L G G Sbjct: 7 ILVVEDEPAISELISVNLQHAGHCPIRAYNAEQAQNLISDVLPDLVLLDWMLPGKSGIAF 66 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILA------RVAA 114 R +P+I ++ Q + + G DD V KP +E++A R A Sbjct: 67 ARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRRRA 126 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 V + L E R+L + M + + ++TQ+ Sbjct: 127 PQLTEDVVSINGLRLDPATHRVAAQTNGSEIKLDLGPTEFRLLHFFMTHPERVHSRTQLL 186 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G VEE V+ HI +LR L+ +++ R GY + Sbjct: 187 DQVWGDH-VFVEERTVDVHIKRLRAALKPAGCDAMIETVRGSGYRL 231 >gi|152974618|ref|YP_001374135.1| two component transcriptional regulator [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152023370|gb|ABS21140.1| two component transcriptional regulator, winged helix family [Bacillus cytotoxicus NVH 391-98] Length = 220 Score = 139 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 46/222 (20%), Positives = 89/222 (40%), Gaps = 9/222 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D +++ + + + D+ ++ Sbjct: 5 ILVIEDDEEIQELIKQFLITQQYIVTVASDGLEGMKQFNKHPFDLILLDVM--MPNLNGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119 E+ IIR S +P+I ++ Q + FD G+DD + KP + RV A Sbjct: 63 EVANIIRNQSNIPIILLTALEEEQDQMKGFDLGIDDYITKPFSFHVFIRRVEAVLRRSYG 122 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + ++N I V D V L +E IL+ L+ N+ K + + I ++G Sbjct: 123 ERTDNHLSFKEIHVDCDTYKVYVNKVEISLTAKEFEILQLLLKNKRKVITRENIVERVWG 182 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ E ++++HI +RKKL + + + +GY ID Sbjct: 183 -YEPYGETRIIDTHIKNIRKKL----NTPYIKTVKGIGYKID 219 >gi|312891216|ref|ZP_07750737.1| two component transcriptional regulator, winged helix family [Mucilaginibacter paludis DSM 18603] gi|311296295|gb|EFQ73443.1| two component transcriptional regulator, winged helix family [Mucilaginibacter paludis DSM 18603] Length = 229 Score = 139 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 38/223 (17%), Positives = 85/223 (38%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 L++D ++ +G + + E + D+ ++ L G++ Sbjct: 7 IALVEDDENLRFLVAERLELEGYKVLEAEDGDKAEKMIMEEMPDIVLLDWML--PGKQGS 64 Query: 62 ELPRIIRAHSQVP-LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118 E+ IR +I ++ ++ + GV D + KP + ++A + + Sbjct: 65 EVCTSIRDKGFDKLVIMMTAKAQDVDKIEAYQFGVSDYITKPFNMDVLVAMIDNKIKFTL 124 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + + + G L E RIL Y + N+ K + + ++ ++ Sbjct: 125 NNEKSESYKFANMEHHPNTHTLLRDGRKIELTILENRILLYFLKNKNKVINREELMMEVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 G ++ V ++ HI +LRKK+ N + + R +GY Sbjct: 185 G-YNADVNTRTLDMHIVRLRKKIENNPDSPQYLQTVRGIGYKF 226 >gi|229172538|ref|ZP_04300097.1| hypothetical protein bcere0006_16500 [Bacillus cereus MM3] gi|228611009|gb|EEK68272.1| hypothetical protein bcere0006_16500 [Bacillus cereus MM3] Length = 229 Score = 139 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 40/227 (17%), Positives = 87/227 (38%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D A++ + G +++ S E D+ ++ L G Sbjct: 4 ILIIEDEAIIAELEKDYLEVAGYTVDIDYSGEKGLQRVLLEDYDLLILDIML--PGIDGY 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + +R +P++ +S + G DD + KP E++ARV A R Sbjct: 62 EICKQVRLEKDIPILMVSAKQEEIDKIKGLGFGADDYIIKPFSPSEMVARVNAHLARYDR 121 Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + + R V G L +E +L + + + +K ++F Sbjct: 122 LTGKRELIKDEIRIRGLFIDKSARRVFVNGTEVMLTGKEFDLLTCMAEHPNQVFSKDRLF 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++G+ D + V H+ +R+K+ + +++ +GY Sbjct: 182 ETVWGM-DVIGDAATVAVHVKNIRQKIELDPFDKSYIETIWGVGYRF 227 >gi|226315467|ref|YP_002775363.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226098417|dbj|BAH46859.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 237 Score = 139 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 50/229 (21%), Positives = 95/229 (41%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +++DD + + +G + + + L + D+ ++ L + Sbjct: 6 ILIVDDEKSIIQLLETVLKKEGFRHIYTAGTAQEALRLLAKNEVDIIILDVML--PDQSG 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------- 113 +L IR S +I ++ S L F G DD V KP + EI+AR Sbjct: 64 FDLCPQIREISSAYIIYLTARASDLDVLSGFAIGGDDYVTKPFNPLEIVARTKAGLRRGV 123 Query: 114 -AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + + R + G + + V GE P P + ++L YL N +K Q Sbjct: 124 LMPVQHAEETRRRYDFGGFVLDEYEGELLVGGEAVPCPAQAYQLLLYLCKNPNMVFSKAQ 183 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++ A++G+ D ++N V HI K+R+++ + + + R LGY + Sbjct: 184 LYEAVWGI-DGMGDDNTVMVHIHKIRERIESDLGAPRYLVTVRGLGYKL 231 >gi|226325687|ref|ZP_03801205.1| hypothetical protein COPCOM_03500 [Coprococcus comes ATCC 27758] gi|225205811|gb|EEG88165.1| hypothetical protein COPCOM_03500 [Coprococcus comes ATCC 27758] Length = 233 Score = 139 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 46/223 (20%), Positives = 86/223 (38%), Gaps = 5/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G S L + S I L+ G Sbjct: 10 ILIVEDDTDINNLLYTALQKAGYETVQAFSGTEARMLFQMDKAGFSLILLDLMLPGISGE 69 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ IR P+I ++ L + SG DD + KP +E+LAR+ R ++ Sbjct: 70 EVLAQIRKQGNTPVIVLTAKDGLDEKIGLLTSGADDYITKPFEIQEVLARIQVQLRHMQQ 129 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEV---FPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + D EV+ + ++E ILE L+ + + +K +IF + Sbjct: 130 EPEHKSVSYKNLELDRERFEVRIAGVLLPKITKQEFAILELLLEHPKQVFSKEEIFEYAW 189 Query: 179 GLFDEAVEENVVESHISKLR-KKLRNKLGFDPVDSKRFLGYSI 220 E ++ HIS +R KK++ + +D+ +GY + Sbjct: 190 DEH-YMGETKTLDVHISNIRKKKIKAVTQEEYIDTVWGIGYRL 231 >gi|228997630|ref|ZP_04157239.1| Uncharacterized sensory transduction protein ykoG [Bacillus mycoides Rock3-17] gi|228762092|gb|EEM11029.1| Uncharacterized sensory transduction protein ykoG [Bacillus mycoides Rock3-17] Length = 224 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 48/223 (21%), Positives = 96/223 (43%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + + +G ++E D+ ++ L G + Sbjct: 4 ILIIEDEESLAEFLELELKYEGYAVEVQYDGRKGLEAAIEKNYDIILLDLML--PGLNGM 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +RA P+I ++ S+ + DSG DD + KP E+LAR+ I+RR + Sbjct: 62 EVCRRLRATKNTPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARIRVIFRREQK 121 Query: 122 SNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 ++ +++ + R E+ L +E +L M N + + + + + Sbjct: 122 EESKPTLLLAFKDLQLHVESRTLRKNDEIIELTNKEFELLLMFMKNINRVLTRDILLEQV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G +D VE N+V+ ++ LR KL + + + R GY + Sbjct: 182 WG-YDAIVETNIVDVYVRYLRNKLHGVDKEEYIQTVRGAGYVM 223 >gi|229012380|ref|ZP_04169557.1| Two-component response regulator [Bacillus mycoides DSM 2048] gi|228749016|gb|EEL98864.1| Two-component response regulator [Bacillus mycoides DSM 2048] Length = 228 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 48/226 (21%), Positives = 89/226 (39%), Gaps = 11/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++++ ++G ++ + + + ++ L Sbjct: 5 ILIVEDEDILREIMKDYLLNEGYNVLEAIDGKEALSIFEEHEVHLIILDIML--PELDGW 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR------EILARVAAI 115 + R IR S VP+I ++ TL F+ G DD V KP + L Sbjct: 63 AVCRRIRKKSNVPIIMLTARVDEDDTLLGFEMGADDYVTKPYSPPILLARAKRLIESRYS 122 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + + I V R V GE + E IL Y M N+G +++ Q+ + Sbjct: 123 STINVSTEDTLTSSGIHVHFPSRTVTVDGEDISMTHTEFEILTYFMQNQGIVISREQLIT 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 I+G ++ A ++ V SHI LR KL K + + GY + Sbjct: 183 KIWG-YEFAGDDRTVNSHIRNLRHKLGQK--ATCIVTVVRTGYKFE 225 >gi|167632633|ref|ZP_02390960.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170685451|ref|ZP_02876675.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|254685422|ref|ZP_05149282.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254742948|ref|ZP_05200633.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|167532931|gb|EDR95567.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170670811|gb|EDT21550.1| DNA-binding response regulator [Bacillus anthracis str. A0465] Length = 215 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 37/220 (16%), Positives = 94/220 (42%), Gaps = 11/220 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++ DD + A F +G + E + + D++ ++ + Sbjct: 4 LIADDEQDMLRILKAYFEKEGFEVFLAKDGEEALQIFYDEKIDLAILDWM--MPKHSGIT 61 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + I+ +S V ++ ++ + L SG D+ V K H ++ R ++L Sbjct: 62 VCQEIKKNSSVKVLMLTAKSESEDELAALQSGADEYVKKTFHPGVLITRA----KKLIQH 117 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 ++ + +++ + + + E +++ + ++G + + ++ ++G FD Sbjct: 118 DDVIQVQDLKIDFTKNKVYKNDKELDITKTELELIKCFLNHKGMILTRKKLLDIVWG-FD 176 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 EE V++H+ +LRKK+ + + + R LGYS++ Sbjct: 177 YFGEERTVDTHVRRLRKKIGE----NIIKTHRGLGYSLEE 212 >gi|300715486|ref|YP_003740289.1| two component heavy metal response transcriptional regulator [Erwinia billingiae Eb661] gi|299061322|emb|CAX58431.1| Two component heavy metal response transcriptional regulator [Erwinia billingiae Eb661] Length = 224 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 41/222 (18%), Positives = 95/222 (42%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD ++ + + G ++ + ++ D+ ++ Sbjct: 3 ILVIDDEPKAREYMRSGLTESGYVVDVAVNGREGLFMAQEYHYDLILLDVM--MPELDGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + + A +P+I ++ +++ + + G DD + KP E+LAR+ RR Sbjct: 61 EVMKTLDAQ-NIPVIFLTAKSTVEDRIKGLELGADDYLVKPFSFAELLARIRTALRRGAN 119 Query: 122 SNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + G +++ R E G L +E +L+ M N G+ +++T I S ++ Sbjct: 120 VKRDELLQVGDLQLDRAKRRVERAGVRIDLTNKEFNLLQLFMLNPGQVMSRTLIASRVWD 179 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + + NVV+ + +LR+K+ + + +GY + Sbjct: 180 M-NFDSDTNVVDVAVRRLRQKVDEPFATPLIHTVHGVGYRCE 220 >gi|259418415|ref|ZP_05742333.1| transcriptional regulatory protein ChvI [Silicibacter sp. TrichCH4B] gi|259345810|gb|EEW57654.1| transcriptional regulatory protein ChvI [Silicibacter sp. TrichCH4B] Length = 230 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 43/223 (19%), Positives = 83/223 (37%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + G + Q D+ ++ L L Sbjct: 5 ILVVDDDPDILEVTGFAVEKAGFETLFASDGLAAINAQQQEDPDLIVLDIGL--PEMDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117 E+ R IR S+VP++ ++ + + G DD + KP R I A + Sbjct: 63 EVCREIRKISEVPILFLTARDEEIDRILGLELGADDYLTKPFSPRELVARIKAILKRSVS 122 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 K S+ G + + ++ L E R+L LM + + Q+ A+ Sbjct: 123 APKPSDAAVIHGALHLDAERHQCTFNDTSVSLTGSEFRLLATLMIRPDHVLTRAQLVDAL 182 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 YG ++ V + ++SHI +R KL + + + +G + Sbjct: 183 YG-YNIHVSDRTIDSHIRNIRAKLSQAGCVEGIVTVHGVGLRM 224 >gi|119356708|ref|YP_911352.1| two component transcriptional regulator [Chlorobium phaeobacteroides DSM 266] gi|119354057|gb|ABL64928.1| two component transcriptional regulator, winged helix family [Chlorobium phaeobacteroides DSM 266] Length = 236 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 44/229 (19%), Positives = 97/229 (42%), Gaps = 12/229 (5%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + ++++D + G + + E + R D+ ++ L G Sbjct: 5 LLLVVEDDQNLAKLLGYNLERAGYRHQLSPTGEDALEQLAKRRFDLVLLDLML--PGIDG 62 Query: 61 LELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 ++ R IR + +P+I ++ + F+ G+DD V KP RE+ R+ AI + Sbjct: 63 FDVCRKIRQNQLLRDIPIIMLTAKGEEIDKVLGFELGIDDYVVKPFSPRELTLRIRAILK 122 Query: 118 RLKVSNNRAETGPI----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 R + + + + V + ++ G+ L E ++L L+ +G+ ++ + Sbjct: 123 RDRRQSAQHQEVLSAAGLDVDIVRHEVKLDGKEIVLTLMEFKLLVALLKRKGQAQSRDML 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 S ++ D + +++HI++LR+KL + + R LGY + Sbjct: 183 LSDVW-EVDRFINTRTIDTHITRLREKLGVTGS--MIKTVRGLGYKFEE 228 >gi|307298063|ref|ZP_07577867.1| two component transcriptional regulator, winged helix family [Thermotogales bacterium mesG1.Ag.4.2] gi|306916149|gb|EFN46532.1| two component transcriptional regulator, winged helix family [Thermotogales bacterium mesG1.Ag.4.2] Length = 224 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 47/222 (21%), Positives = 90/222 (40%), Gaps = 11/222 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + ++ + + E S + DV ++ L L+ Sbjct: 4 LIVDDDLDILNIVRTACENESMQTSTAANAEELWSSLRSEKPDVILLDIML--PDANGLD 61 Query: 63 LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR---EILARVAAIYRR 118 L + IR +S++P+I ++ S + + G DD V KP + R + V Sbjct: 62 LVKKIRTMYSRIPIIFLTARKSDLDMILGLELGADDYVTKPFNPRALVARIKAVMRRTEI 121 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++ G V G+ L RRE +L+ L N G+ + ++ ++ Sbjct: 122 SGTLEDKLTIGDAVVNLKSYTVTKNGKSEELTRREFELLKLLAENPGRVFTREELLDKVW 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G+ D + V+ HISKLR+K+ + + R +GY Sbjct: 182 GM-DFFGDFRTVDVHISKLREKVGE----GFIKTVRGVGYKF 218 >gi|306827976|ref|ZP_07461243.1| two component response regulator [Streptococcus pyogenes ATCC 10782] gi|304429895|gb|EFM32937.1| two component response regulator [Streptococcus pyogenes ATCC 10782] Length = 228 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 91/224 (40%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + +G + + D+ ++ L Sbjct: 5 ILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLML--PEMDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R ++ ++ ++ S+ + D G DD + KP E+LAR++AI+RR + Sbjct: 63 EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARISAIFRRQDI 122 Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + R + L +RE +L LM N + + + ++ S Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +DEAVE NVV+ +I LR K+ + + R +GY I Sbjct: 183 VW-KYDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225 >gi|325679466|ref|ZP_08159046.1| response regulator receiver domain protein [Ruminococcus albus 8] gi|324108753|gb|EGC02989.1| response regulator receiver domain protein [Ruminococcus albus 8] Length = 224 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 46/223 (20%), Positives = 88/223 (39%), Gaps = 8/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D A + D L +G S L + ++ L G Sbjct: 4 ILIIEDDAGINDMLRVLLRQNGYDTISAYSGTEGL-LAHGEEVSLILLDLML--PGLSGE 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118 + + ++ VP+I S + +D F G DD V KP H+ E ++ Sbjct: 61 AVIKGLKEKKNVPVIVTSAIHDVSKKVDLFALGADDYVTKPFHNEELLARISARLRNVLP 120 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + I + G L + E +LE M + + K++I+ ++ Sbjct: 121 EQTKGDVLTYKDIILNKSEHTVSCHGTAVELSKHEFALLELFMESPKRTCTKSRIYDTVW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++ + ++N + HISKLRKKL+ D +++ +GY + Sbjct: 181 D-YENSADDNTLNVHISKLRKKLKECSPDEDYIETVWGIGYRL 222 >gi|264677272|ref|YP_003277178.1| two component transcriptional regulator, winged [Comamonas testosteroni CNB-2] gi|262207784|gb|ACY31882.1| two component transcriptional regulator, winged [Comamonas testosteroni CNB-2] Length = 223 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 56/221 (25%), Positives = 102/221 (46%), Gaps = 9/221 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D +++ G ++E E ++L D + ++ L L Sbjct: 3 ILLIEDEPTLREQLHQALLQAGHTVETAADGETAQYLGEVESFDAAVLDLGL--PVRDGL 60 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119 + R RA + +P++ ++ + + D+G DD + KP H E+LAR+ A+ RRL Sbjct: 61 SVLRAWRAQGRSMPVLILTARAAWHEKVAGMDAGADDYLAKPFHMEELLARLRALLRRLS 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++ + G I + S V+G+ L E ++L LM G V++T++ IY Sbjct: 121 PHASALWQCGSITLDSRQARVTVEGQALTLTSHEFKVLALLMQRMGAVVSRTELSEHIY- 179 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D + N +E + +LRKKL +++ R LGY + Sbjct: 180 PQDSDRDSNTIEVFVGRLRKKL----PPGSIETVRGLGYRL 216 >gi|167766603|ref|ZP_02438656.1| hypothetical protein CLOSS21_01109 [Clostridium sp. SS2/1] gi|167711726|gb|EDS22305.1| hypothetical protein CLOSS21_01109 [Clostridium sp. SS2/1] Length = 238 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 47/229 (20%), Positives = 86/229 (37%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD + D ++ + F S D++ ++ L Sbjct: 12 ILIIDDEQDIADLLEVYLKNENYVVYKFYCATDAMSCIESGDIDLAILDIML--PDMNGF 69 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L ++IR P+I ++ + G DD V KP E++ARV A RR K Sbjct: 70 SLCQLIRKKYTYPIIMLTAKIEETDKITGLTLGADDYVTKPFRPLEVVARVKAQLRRYKK 129 Query: 122 SNNRAE---------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + + + + GE L E IL L+++ G V+ + Sbjct: 130 YSPGIITEKIPSELSYNKLCLNVQTHECLLDGEPVSLTPTEFSILHVLLSSAGNVVSIEE 189 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 +F A++ + + + HI LR+KL + + + +GY I Sbjct: 190 LFHAVWKDEYYSKNSSTITVHIRHLREKLNDTSDTPQYIKTIWGVGYKI 238 >gi|302391640|ref|YP_003827460.1| two component transcriptional regulator, winged helix family [Acetohalobium arabaticum DSM 5501] gi|302203717|gb|ADL12395.1| two component transcriptional regulator, winged helix family [Acetohalobium arabaticum DSM 5501] Length = 233 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 43/228 (18%), Positives = 92/228 (40%), Gaps = 7/228 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +++DD + + +G + + E D+ ++ L G G +V Sbjct: 6 ILVVDDEKNILELVKYNLIQEGYEVSLAINGEKALKKVDDIAPDLIILDIMLPGLDGFEV 65 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + + +P+I +S ++ + + G D + KP RE+ +RV A+ RR+ Sbjct: 66 CHCLQEMEKTEGIPIIFLSAKSEVEDKVKGLNLGATDYLTKPFSPRELASRVKAVSRRIN 125 Query: 121 VSNNRAETGPIR----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + + G + E L +E +L YL+ GK ++ ++ + Sbjct: 126 QNPYHKKETLRYGKLTMDLKGYRVLINKEEIDLTNKEFNLLAYLIDKLGKVCSRDELLAN 185 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223 ++G ++ V+ HI LRKK + + + + +GY + N Sbjct: 186 VWG-YENVSGIRTVDVHIRMLRKKFTQYNIESLLIKTVQGVGYKLVKN 232 >gi|300854069|ref|YP_003779053.1| putative response regulator [Clostridium ljungdahlii DSM 13528] gi|300434184|gb|ADK13951.1| predicted response regulator (CheY-like receiver domain and HTH DNA-binding domain) [Clostridium ljungdahlii DSM 13528] Length = 226 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 50/223 (22%), Positives = 92/223 (41%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D V D A +G + + L + + ++ L Sbjct: 4 ILVIEDEIKVSDVIKAYLEREGYKVYCATTGLEGIRLFNKIEFKLVILDLML--PDIDGE 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ IR S V + ++ +L L + G D+ + KP RE+ ARV A++RRL Sbjct: 62 EVCSTIRRISNVHIFMLTAKVTLSDKLQGLNIGADEYLTKPCSPRELTARVNALFRRLSS 121 Query: 122 SNNRAETGPI---RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + D R +++GE + E IL L NRG+ +++ Q+ ++ Sbjct: 122 AEEPEIISRDGLLVINHDKRCVKLKGEEIAMTPNEFNILYVLAKNRGRVLSRDQLIEQVF 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 G+ D + ++ HI +RKK+ + + LGY Sbjct: 182 GI-DFEGSDRTIDVHIKNIRKKIERDTRFPKYIITVIKLGYKF 223 >gi|285017655|ref|YP_003375366.1| two-component system regulatory protein, ompr family [Xanthomonas albilineans GPE PC73] gi|283472873|emb|CBA15378.1| probable two-component system regulatory protein, ompr family [Xanthomonas albilineans] Length = 236 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 47/228 (20%), Positives = 94/228 (41%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ + G +E ++ L + + D+ ++ GE L Sbjct: 5 ILVVDDDPDLRRLISEFLSEHGYQVESAETVAQMRQLMAERQPDLIVLDVM--MPGEDGL 62 Query: 62 ELPRIIRAHSQVP-LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 R + + P +I +S S + + G DD + KP + RE+LARV A+ RR + Sbjct: 63 SAARQLASERGAPAVIMLSALGSDTDRIIGLEVGADDYLAKPCNPRELLARVRALLRRSQ 122 Query: 121 VSNNRAETGPIRVFSDGRD--------PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + E G + G L E +L + + + +++ Q Sbjct: 123 AATLPPEARGNVYEFAGWRLDVIRRDLRDPTGIFINLSDGEFALLRTFVEHPQRVLSRDQ 182 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + G D V + ++S IS+LR+K+ ++ + + + R GY + Sbjct: 183 LLDYARGR-DTEVYDRAIDSQISRLRRKINERVQTELIRTVRNEGYML 229 >gi|262275912|ref|ZP_06053721.1| putative DNA-binding response regulator [Grimontia hollisae CIP 101886] gi|262219720|gb|EEY71036.1| putative DNA-binding response regulator [Grimontia hollisae CIP 101886] Length = 240 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 35/229 (15%), Positives = 84/229 (36%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ G ++ + + + + D+ ++ L G+ Sbjct: 7 ILVVDDDLEIRELLQEYLSKAGYNVTTAQNGQEMKAKLAVQYPDLILLDIML--PGDDGF 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112 L + +R S VP+I ++ + + G DD + KP R+ + Sbjct: 65 TLCKYVRQDSSVPIIMLTAVSDETDQIIGLELGADDYIAKPFSPRQLVARIRALLRRTQQ 124 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 K R + + + V G+ + + +L + + + + Sbjct: 125 LQETTLSKPKAIRFAQWRLDPVAQRLNHLVTGQEVEMTSSDFALLMLFIESPNTLLDRNA 184 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220 I +A G D +E ++ +S+LR++L++ + + R GY Sbjct: 185 ISNATRGR-DAQPQERGIDVQVSRLRQRLKDNGRQSTIIKTVRGNGYMF 232 >gi|220919230|ref|YP_002494534.1| two component transcriptional regulator, winged helix family [Anaeromyxobacter dehalogenans 2CP-1] gi|219957084|gb|ACL67468.1| two component transcriptional regulator, winged helix family [Anaeromyxobacter dehalogenans 2CP-1] Length = 230 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 49/224 (21%), Positives = 88/224 (39%), Gaps = 11/224 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L+DD + G + E D+ ++ L E Sbjct: 5 LLVDDERDLLSLLDFNLRASGFETLLATTGEQALSHLRRRVPDLVLLDVML--PDVSGTE 62 Query: 63 LPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIY 116 + R I++ VP++ ++ + F+ G DD V KP RE++ R+ Sbjct: 63 VCRQIKSDPRTRHVPVVMLTAKGDEVDRVVGFELGADDYVTKPFSVRELVLRLKAVLRRA 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 GPIRV + V G L E ++L LM+ G+ ++ Q+ Sbjct: 123 GARPSERPPESVGPIRVDVESHRVYVDGAEVVLTPLEFKLLTTLMSRLGRVQSRDQLLED 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ VE V++H+ +LR+KL G D +++ R +GY + Sbjct: 183 VW-EMSAEVETRTVDTHVKRLREKLG--SGRDLLETVRGIGYRL 223 >gi|206969330|ref|ZP_03230285.1| regulatory protein VanR [Bacillus cereus AH1134] gi|206736371|gb|EDZ53529.1| regulatory protein VanR [Bacillus cereus AH1134] Length = 229 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 45/225 (20%), Positives = 92/225 (40%), Gaps = 10/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ ++G + + + D+ ++ L + Sbjct: 7 ILIVDDDIEIRKIVSIYLKNEGYEIIDASDAIEALETLRNTTIDLIILDIML--PKMDGI 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILA------RVAAI 115 E IR Q+P+I +S + SG +D + KP + E++A R + Sbjct: 65 EACLKIREQYQMPIIFLSAKDEDIDKIQGLMSGAEDYITKPFNPLELMARIKSQLRRYRV 124 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 Y+ +V E G ++V + R ++ E L +E IL L+ N+GK + +I+ Sbjct: 125 YQTEEVKQFIHEIGHLKVDEETRQVFIRNEEVRLTPKEFDILSLLVRNKGKVFSVEKIYE 184 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYS 219 ++ +N V HI+K+R+K+ + + +GY Sbjct: 185 MVW-EDSFYKSDNTVMVHITKIREKIEENPRQPVYLKTVWGVGYR 228 >gi|255280222|ref|ZP_05344777.1| DNA-binding response regulator ResD [Bryantella formatexigens DSM 14469] gi|255269313|gb|EET62518.1| DNA-binding response regulator ResD [Bryantella formatexigens DSM 14469] Length = 225 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 37/222 (16%), Positives = 87/222 (39%), Gaps = 6/222 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + ++ ++ + S + D++ + ++ + Sbjct: 7 LVVDDESRMRKLVKDFLVKKDFTVLEAEDGAQAVDVFFSTK-DIALVILDVMMPKMDGWQ 65 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV--NKPIHHREILARVAAIYRRLK 120 + R IR S VP+I ++ + L F+ GVD+ + Sbjct: 66 VCREIRGVSNVPIIMLTARADERDELLGFELGVDEYISKPFSPKILVARVEAILRRSNAL 125 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + G I + + G+ L +E +L Y M N+G +++ +I ++++ Sbjct: 126 APDKIMTAGKISLDKAAHVVKADGQSVDLSYKEFELLSYFMENQGIALSREKILNSVW-N 184 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D + +++H+ KLR KL + D + + +GY + Sbjct: 185 YDYFGDARTIDTHVKKLRSKLGKQG--DYIKTIWGMGYKFEV 224 >gi|150016009|ref|YP_001308263.1| two component transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149902474|gb|ABR33307.1| two component transcriptional regulator, winged helix family [Clostridium beijerinckii NCIMB 8052] Length = 233 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 37/228 (16%), Positives = 92/228 (40%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + G + N+ + + + + L+ G Sbjct: 6 ILIVDDEEHIVELLHFNLVNAGYEVLSANNGIDAVKIAKAEKPSLL--LLDLMLPGMDGF 63 Query: 62 ELPRIIRAHSQVP---LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAA 114 ++ + I+ S++ +I ++ + + G DD + KP R + A + Sbjct: 64 DVCKEIKRDSEMKKTSIIMLTAKGEELDKILGLELGADDYITKPFSVRELLARVKAVLRR 123 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + ++ + ++V + + V L +E +L+ L+ N+G+ + + + Sbjct: 124 TSSFNEAEDDVYNSENLKVDFERHEVYVNDRKVDLTLKEFELLQILIKNKGRILKRETLL 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221 I+G ++ E V+ HI LRKK+ + +++ R +GY + Sbjct: 184 DKIWG-YEYIGETRTVDVHIRYLRKKIEEDDKNPRFIETIRGVGYRFN 230 >gi|299822697|ref|ZP_07054583.1| two component response regulator [Listeria grayi DSM 20601] gi|299816226|gb|EFI83464.1| two component response regulator [Listeria grayi DSM 20601] Length = 229 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 43/224 (19%), Positives = 92/224 (41%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +++DD + + +G+ + +L + + D+ ++ ++ + Sbjct: 4 ILIVDDEKELSLLLKRILEKEGLSDISIAQNLAEGYTKFEAEKPDLVLLD--IMLPDGEG 61 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +L + IR S VP++ +S L G DD + KP +E+ RV A RR Sbjct: 62 YDLCKKIRETSIVPILFMSAKGEEIDKLLGLAIGGDDYITKPFSPKEVAYRVKAHLRRAN 121 Query: 121 VSNNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + + GP + + + GE L +E ++ M N + ++K +F + Sbjct: 122 FTVPQQKALQVGPFQFNDNETELRKAGEPLELTAKEIALMRVFMHNPNQIISKETLFERV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + +N + HI +LR+K+ + + + + LGY Sbjct: 182 W-QETFLGADNTLMVHIRRLREKIEAQPSKPEYLITVKGLGYKF 224 >gi|118477956|ref|YP_895107.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|118417181|gb|ABK85600.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] Length = 248 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 44/230 (19%), Positives = 84/230 (36%), Gaps = 12/230 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD + + ++G ++ + + S+ D+ ++ L Sbjct: 22 ILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDDALQMISTYEVDLMILDIM--MPKRNGL 79 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARVA 113 E+ + +R ++ VP++ +S + +G DD + KP + E + Sbjct: 80 EVCQEVRENNTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRRSSF 139 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 K + + +V GE L E IL L +N G+ + +I Sbjct: 140 QNASSPKNEDGMIRIRSAEIHKHNHTVKVNGEYIKLTSIEFDILYLLASNTGRVFSSEEI 199 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222 F ++ D V HIS LR KL G + + +GY I+ Sbjct: 200 FERVWNE-DGYGSNKTVMVHISNLRDKLETGMNGEKFIHTVWGVGYKIEK 248 >gi|325265151|ref|ZP_08131877.1| DNA-binding response regulator [Clostridium sp. D5] gi|324029555|gb|EGB90844.1| DNA-binding response regulator [Clostridium sp. D5] Length = 232 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 37/229 (16%), Positives = 84/229 (36%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D +++G G + + ++ ++ + Sbjct: 6 ILIVEDDKEIREGVQIYLQSQGYKVYQAADGVEGLEVMEKEEIHLAIVDVM--MPRMDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + +R P+I +S + + G DD V KP E++ARV + RR + Sbjct: 64 RMTMKLREKYDFPVIMLSAKSEEVDKIMGLNIGADDYVTKPFTPMELMARVNSQLRRYRR 123 Query: 122 SNNRAETGPIRV-------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + E D + V G + E +IL L N G+ + +I+ Sbjct: 124 FMEKLEPKENVHVIGGLEINEDRVEVLVDGNPVKMTPIEYKILLLLAKNPGRVFSAEEIY 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 ++ ++A+ + + H+ +R+K+ + + +GY I+ Sbjct: 184 ERVW--QEKAISTDTIMVHVRNIREKIEVDPKNPKYLKVVWGVGYKIEK 230 >gi|271970052|ref|YP_003344248.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270513227|gb|ACZ91505.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 234 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 41/222 (18%), Positives = 77/222 (34%), Gaps = 7/222 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ A G + R D+ ++ L Sbjct: 11 LLVVDDEPNIRELLSASLRRSGFEVVTAADGREAVHFAERIRPDLVVLDVML--PDMDGF 68 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118 + +R + DD V KP E + V R Sbjct: 69 AVAGRLREMGGQMPVVFLTARDATDDKVAGLRVADDYVTKPFSLEEVLARIRAVLRRTRG 128 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 R + G + + + G L E ++L Y M N G+ ++K QI ++ Sbjct: 129 DLDLPTRLQVGDLELDEEAHQVWRSGTPVRLSPTEFKLLHYFMVNTGRVLSKAQILDHVW 188 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D + VVES++S LR+K+ + + + R +GY + Sbjct: 189 -NYDFGGDAGVVESYVSYLRRKV-DVSEPRLIHTLRGVGYVL 228 >gi|229551853|ref|ZP_04440578.1| response regulator [Lactobacillus rhamnosus LMS2-1] gi|229314797|gb|EEN80770.1| response regulator [Lactobacillus rhamnosus LMS2-1] Length = 248 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 43/237 (18%), Positives = 88/237 (37%), Gaps = 19/237 (8%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D V + F + + E A + I L + Sbjct: 8 LLMIEDNTSVAEMMAMFFQKEKWEVVNAYDGEEGLAKFKEAPDSFDIITLDLNLPKMDGM 67 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118 ++ + IR S+ PLI ++ + + + G DD V KP ++AR+ A++RR Sbjct: 68 QVAKEIRQISETVPLIMLTARDTESDQVLGLELGADDYVTKPFSPITLIARIKALHRRAE 127 Query: 119 --------------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANR 164 + ++ L +E +L L + Sbjct: 128 VGAEAGAEQATPETKADGFDVETDHFKLSTKTREAYLNGKQIEGLTPKEFDLLHTLSKSP 187 Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + ++ Q+ ++ ++ +E V++HI KLR+K+ K+G + + +GY D Sbjct: 188 KQVFSREQLLQLVWD-YEYYGDERTVDAHIKKLRQKIE-KVGPQIIQTVWGVGYKFD 242 >gi|254429432|ref|ZP_05043139.1| response regulator receiver domain protein [Alcanivorax sp. DG881] gi|196195601|gb|EDX90560.1| response regulator receiver domain protein [Alcanivorax sp. DG881] Length = 227 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 44/225 (19%), Positives = 82/225 (36%), Gaps = 8/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + E +S + L ++ L + Sbjct: 4 ILIVEDEPRLSQLVADYLQHAHYQTEQTDSAKAAIALAREQSFQAVLLDLML--PDGDGM 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 E+ + IR HS VP++ ++ L + G DD + KP RE++ARV Sbjct: 62 EVCKAIRQHSNVPILMVTARVDEVDRLLGLELGADDYICKPFSPRELVARVKAVLRRANP 121 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + L E +L L + G+ ++ Q+ IY Sbjct: 122 EPTEQEHELQLDEERYEAILKQPQGQQRIALTAIEFALLATLSRHPGRIWSRDQLMDEIY 181 Query: 179 GLFDEAVEENVVESHISKLRKKL--RNKLGFDPVDSKRFLGYSID 221 V + ++SHI KLR+KL ++ D + S +GY ++ Sbjct: 182 -KDHRVVSDRTIDSHIRKLRRKLSDGDEQSHDWIGSVYGVGYRLE 225 >gi|163814967|ref|ZP_02206354.1| hypothetical protein COPEUT_01117 [Coprococcus eutactus ATCC 27759] gi|158449650|gb|EDP26645.1| hypothetical protein COPEUT_01117 [Coprococcus eutactus ATCC 27759] Length = 229 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 48/227 (21%), Positives = 90/227 (39%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + + + +E + S + ++ L Sbjct: 4 ILIIEDELSIAELERDYLELNDFEVEIEPNGINGLEKALSEEYSLILLDLML--PDMDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR +P+I ++ + + GVDD V KP E++ARV A R + Sbjct: 62 EICRQIREKKDIPIIMVTAKKNDIDKIRGLGLGVDDYVTKPFSPSELVARVKAHISRYER 121 Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N+ E +++ R V E +E IL +L +N K +K ++F Sbjct: 122 LVGSTALKNDVIEIRGLKIDKTDRRVYVDNEEKVFTNKEFDILCFLASNPNKVFSKDELF 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 S I+ + D + V HI K+R+K+ + +++ +GY Sbjct: 182 SKIWNM-DSIGDIATVTVHIKKIREKIEFDTSNPQYIETVWGVGYRF 227 >gi|326797358|ref|YP_004315178.1| PhoB family transcriptional regulator [Marinomonas mediterranea MMB-1] gi|326548122|gb|ADZ93342.1| two component transcriptional regulator PhoB, winged helix family [Marinomonas mediterranea MMB-1] Length = 231 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 46/223 (20%), Positives = 93/223 (41%), Gaps = 9/223 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++IDD A +++ G + + + R D+ ++ G +E Sbjct: 7 LIIDDEAPIREMIAVALEMAGYEYLEAENAQHGHEIIVDHRPDLILVDWM--MPGGSGIE 64 Query: 63 LPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L R ++ S +P+I ++ + + G DD + KP RE++AR+ A+ RR Sbjct: 65 LTRRLKKDSTTAEIPVIMLTAKSEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRRA 124 Query: 120 KVSNNRAETGPIR--VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + + + + E R+L++LM ++ + ++ Q+ + Sbjct: 125 TPQGVDEPIEVDGLLLDPISQRVSIGNKPLEMGPTEYRLLKFLMTHQERAYSRAQLLDQV 184 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G + VEE V+ HI +LRK + N + + R GY Sbjct: 185 WG-GNVYVEERTVDVHIRRLRKAIGN-THDSLIQTVRGTGYRF 225 >gi|317508033|ref|ZP_07965722.1| response regulator receiver domain-containing protein [Segniliparus rugosus ATCC BAA-974] gi|316253672|gb|EFV13053.1| response regulator receiver domain-containing protein [Segniliparus rugosus ATCC BAA-974] Length = 228 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 42/220 (19%), Positives = 87/220 (39%), Gaps = 5/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + +G + R D+ ++ L G + Sbjct: 8 ILVVDDDVALAEMLTIVLRGEGFDPVVVSDGSKVLPAVRELRPDLVLLDVML--PGLNGI 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R +RA S VP++ ++ + +SG DD V KP +E++ARV A RR +V Sbjct: 66 DVCRQVRAESGVPIVMLTARTDTIDVVVGLESGADDYVMKPFKPKELVARVRARLRRNEV 125 Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + + ++ L E +L L + + + ++G Sbjct: 126 AAPEVLTIDDVEIDVLAHRVSRADQIISLTPLEFDLLVALARKPRQVFTREVLLEQVWG- 184 Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219 + + +V H+ +LR K+ + V + R +GY Sbjct: 185 YRHPADTRLVNVHVQRLRAKVEKDPDAPRVVLTVRGVGYK 224 >gi|255024215|ref|ZP_05296201.1| transcriptional regulatory protein ResD [Listeria monocytogenes FSL J1-208] Length = 228 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 40/228 (17%), Positives = 83/228 (36%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D V + F + + + + D++ I+ L + Sbjct: 3 LLMIEDNVSVCEMIEMFFMKEEIDATFVHDGKQGYEAFFKDEYDIAIIDLML--PNMDGM 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAA 114 + R IR S VP+I ++ S + + G DD V KP ++ R + Sbjct: 61 TICRKIREVSDVPIIILTAKESESDQVLGLEMGADDYVTKPFSPLTLMARIKAVTRRKNS 120 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + T + L +E +L +LM + + ++ Q+ Sbjct: 121 TSNAENNEDILETTYFKISKRTREIFYQGELLDALTPKEFDLLYFLMQHPRQVFSREQLL 180 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 ++G + +E V+ HI +LR+K+ + + + +GY D Sbjct: 181 EQVWG-YQFYGDERTVDVHIKRLRQKIATETKP-FLHTVWGVGYKFDE 226 >gi|229494209|ref|ZP_04387972.1| two component transcriptional regulator, winged helix family [Rhodococcus erythropolis SK121] gi|229318571|gb|EEN84429.1| two component transcriptional regulator, winged helix family [Rhodococcus erythropolis SK121] Length = 237 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 41/223 (18%), Positives = 82/223 (36%), Gaps = 8/223 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + +G ++ + + ++ L G LE Sbjct: 15 LVVDDETALAKVVANYLTREGFTVRLAHDGPSAVRSVREFEPALIVLDLML--PGFDGLE 72 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYRR 118 + R IR S ++ +S + +G DD V KP RE++ARV Sbjct: 73 VCRRIRTFSDAYVLMLSARGDESDKVTGLAAGADDYVVKPFGPRELVARVKALLRRPRAS 132 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + + R V L E +L L ++ I ++++ Sbjct: 133 SMLPEALPTPPGLDIDVLARTVHVDNRPVDLTPTEFALLSALATRPDAAWSRADIIASVW 192 Query: 179 GLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220 G ++++V+ H+ LR+KL + + + R +GYS+ Sbjct: 193 GSP-WFGDQHIVDVHVRALRRKLGDDATDPRFIRTVRGVGYSL 234 >gi|229817860|ref|ZP_04448142.1| hypothetical protein BIFANG_03146 [Bifidobacterium angulatum DSM 20098] gi|229784760|gb|EEP20874.1| hypothetical protein BIFANG_03146 [Bifidobacterium angulatum DSM 20098] Length = 242 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 40/228 (17%), Positives = 83/228 (36%), Gaps = 16/228 (7%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + +G S + R D+ ++ L LE Sbjct: 16 LVVEDEPTLATAIAQRITAEGWSARVAGDGASAVQAAAQLRPDLVIMDIML--PVMDGLE 73 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA--------- 113 + I A VP++ ++ + +G DD + KP RE++AR Sbjct: 74 ATKRIVADRPVPVLILTARDDEADKVIGLGAGADDYMTKPFSMRELIARCKALLRRVDRA 133 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + + + G + + R + G+ L E +L L + + ++ Sbjct: 134 KVIAKNAENEKVLDFGSLIIDPAQRTVSLNGKDVHLTPTEFDLLATLARKPKSVLTREKL 193 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ D + V+SH+ LR KL G D + + +GY+ + Sbjct: 194 LEEVWDWVDASG-TRTVDSHVKALRHKL----GPDMIRTVHGVGYAFE 236 >gi|154507916|ref|ZP_02043558.1| hypothetical protein ACTODO_00401 [Actinomyces odontolyticus ATCC 17982] gi|153797550|gb|EDN79970.1| hypothetical protein ACTODO_00401 [Actinomyces odontolyticus ATCC 17982] Length = 240 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 46/224 (20%), Positives = 91/224 (40%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++D + G + ++R D+ ++ L Sbjct: 16 LLVVDDEPNIRDLLASSLRFAGFDVITAEDGSGAFHEAQASRPDLIVLDVML--PDMDGF 73 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI---HHREILARVAAIYR 117 + R +R A P++ ++ ++ + G DD V KP + + Sbjct: 74 TVTRRLRDAGITTPVLFLTARDDMRDKIQGLTVGGDDYVTKPFGLEEVVARIRAILRRTM 133 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + G + + D + G L E ++L YL+ N G+ V+K QI + Sbjct: 134 GSEEDDAFLRVGDLVIDEDAHEVTRAGVPIDLSPTEFKLLRYLVINAGRVVSKMQILDHV 193 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220 + +D E +VES+IS LR+KL + + + +KR +GY + Sbjct: 194 W-EYDWDGEVAIVESYISYLRRKLAVEGASGELIHTKRGVGYIL 236 >gi|148380236|ref|YP_001254777.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 3502] gi|153932234|ref|YP_001384540.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|153936748|ref|YP_001388056.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|148289720|emb|CAL83825.1| two-component response regulator [Clostridium botulinum A str. ATCC 3502] gi|152928278|gb|ABS33778.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|152932662|gb|ABS38161.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] Length = 235 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 38/228 (16%), Positives = 80/228 (35%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + +G + + ++ + Sbjct: 6 ILIVEDDVNINNMIKESLIKEGYDIGQAFHGLEAMEKFQGENYHMVIMDIM--MPVMDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI--------HHREILARVA 113 E R IR S+VP+I +S + G DD + KP I + Sbjct: 64 ESMRRIREKSKVPIIILSAKGEDSDKIIGLGMGADDYIVKPFSVPELIARVKCNIRRAIY 123 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + N E G ++ + G+ L +E +IL+ N + K QI Sbjct: 124 YNETKSIKENKIHEYGDVKFDINNYTVTKGGKELTLTAKEMKILKLFFENPNRVFTKVQI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 + +++G + + N V H+ +LR K+ + +++ +GY + Sbjct: 184 YDSVWGE-EFLSDYNTVTVHMRRLRSKIEDDPNNPKLIETVWGIGYKL 230 >gi|46907735|ref|YP_014124.1| DNA-binding response regulator [Listeria monocytogenes serotype 4b str. F2365] gi|47093429|ref|ZP_00231194.1| DNA-binding response regulator [Listeria monocytogenes str. 4b H7858] gi|226224108|ref|YP_002758215.1| two-component response regulator [Listeria monocytogenes Clip81459] gi|254852131|ref|ZP_05241479.1| DNA-binding response regulator [Listeria monocytogenes FSL R2-503] gi|254931442|ref|ZP_05264801.1| DNA-binding response regulator [Listeria monocytogenes HPB2262] gi|300764827|ref|ZP_07074817.1| DNA-binding response regulator [Listeria monocytogenes FSL N1-017] gi|46881004|gb|AAT04301.1| DNA-binding response regulator [Listeria monocytogenes serotype 4b str. F2365] gi|47018208|gb|EAL08976.1| DNA-binding response regulator [Listeria monocytogenes str. 4b H7858] gi|225876570|emb|CAS05279.1| Putative two-component response regulator [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258605434|gb|EEW18042.1| DNA-binding response regulator [Listeria monocytogenes FSL R2-503] gi|293582993|gb|EFF95025.1| DNA-binding response regulator [Listeria monocytogenes HPB2262] gi|300514503|gb|EFK41560.1| DNA-binding response regulator [Listeria monocytogenes FSL N1-017] gi|328465545|gb|EGF36774.1| two-component response regulator [Listeria monocytogenes 1816] gi|328474868|gb|EGF45668.1| two-component response regulator [Listeria monocytogenes 220] gi|332311949|gb|EGJ25044.1| Transcriptional regulatory protein yclJ [Listeria monocytogenes str. Scott A] Length = 228 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 40/228 (17%), Positives = 83/228 (36%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D V + F + + + + D++ I+ L + Sbjct: 3 LLMIEDNVSVCEMIEMFFMKEEIDATFVHDGKQGYEAFFKDEYDIAIIDLML--PNMDGM 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAA 114 + R IR S VP+I ++ S + + G DD V KP ++ R + Sbjct: 61 TICRKIREVSDVPIIILTAKESESDQVLGLEMGADDYVTKPFSPLTLMARIKAVTRRKNS 120 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + T + L +E +L +LM + + ++ Q+ Sbjct: 121 ATSTENNEDILETTYFKISKRTREIFYQGELLDALTPKEFDLLYFLMQHPRQVFSREQLL 180 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 ++G + +E V+ HI +LR+K+ + + + +GY D Sbjct: 181 EQVWG-YQFYGDERTVDVHIKRLRQKIATETKP-FLHTVWGVGYKFDE 226 >gi|170759641|ref|YP_001785959.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] gi|169406630|gb|ACA55041.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] Length = 230 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 44/229 (19%), Positives = 90/229 (39%), Gaps = 11/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++D ++G ++ + E + ++ ++ L Sbjct: 5 ILVVDDEKEIRDLLEINLINEGYNVFKASCGEEALEILEREEVNLMVLDIM--MPDMDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-------REILARVAA 114 E+ + R +P++ +S ++ +G DD V KP +H R +L R Sbjct: 63 EVCKRARQKYSIPILMLSAKVEDMDRIEGIMTGADDYVCKPFNHLELAVRIRALLRRAYF 122 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + ++++S+N + + + L RE IL L NRG + +IF Sbjct: 123 LNTKMQISDNIIRIESMVIDKKQHKVTINDNEIDLTAREFEILYLLANNRGMVFSAEEIF 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222 ++ N V H+S+LR K+ G + + +GY I+ Sbjct: 183 EKVWKER-YFQSNNTVMVHMSRLRDKIEQHMEGSKVIHTVWGVGYKIEK 230 >gi|254361254|ref|ZP_04977397.1| phosphate regulon response regulator PhoB [Mannheimia haemolytica PHL213] gi|153092750|gb|EDN73793.1| phosphate regulon response regulator PhoB [Mannheimia haemolytica PHL213] Length = 228 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 37/221 (16%), Positives = 86/221 (38%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++++D +++ + + + ++ ++ + G G + Sbjct: 5 ILIVEDERAIREMLSLYLSKQ-YQVIEAEDYQSAINKLG-EKPELILLDWMMPGRSGIHL 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI-LARVAAIYRRL 119 ++ + ++P+I ++ S + + ++G DD + KP + + A R Sbjct: 63 IKYLKKQPETEKIPIIMLTARSSEEDCITGLNAGADDYITKPFSPQVLLARIEAVWRRSY 122 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +N + + + V + L E ++L +LM + K + Q+ I+G Sbjct: 123 DPPSNLINIDGLILDQQAQRVLVAEQEVKLSGTEYKLLHFLMTHPEKVYRREQLLDFIWG 182 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D VE+ V+S+I +LRK L + + R GY Sbjct: 183 N-DIYVEDRTVDSYIRRLRKSLEPYGFERYIQTVRGSGYRF 222 >gi|154482551|ref|ZP_02024999.1| hypothetical protein EUBVEN_00218 [Eubacterium ventriosum ATCC 27560] gi|149736576|gb|EDM52462.1| hypothetical protein EUBVEN_00218 [Eubacterium ventriosum ATCC 27560] Length = 228 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 46/224 (20%), Positives = 99/224 (44%), Gaps = 6/224 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +++D + + + G + F + E + D+ ++ L G V Sbjct: 4 IYILEDDKNISEIEQFALKNAGYEVSAFATASDFENALTKEHPDLIIMDIMLPDRDGLSV 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118 L+ R ++ +++P+I ++ S + D G DD + KP E+++RV A Sbjct: 64 LKDVRAEQSTAKLPVIMVTAKTSEMDKVKGLDQGADDYMTKPFGIMELISRVKALLRRAN 123 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + ++ I + V G+ L +E ++L+ L+ N G + ++QI ++ Sbjct: 124 VSGGSHIYSFDGITMDDAKHQVLVDGQETELTYKEYQLLKMLIQNSGIVLQRSQILDRVW 183 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 G+ D E ++ HI LR+K+ K + + R +GY++++ Sbjct: 184 GI-DYEGESRTLDMHIKTLRRKIGEKGS--LIQTVRNVGYTMNY 224 >gi|126701227|ref|YP_001090124.1| two-component response regulator [Clostridium difficile 630] gi|254977229|ref|ZP_05273701.1| two-component response regulator [Clostridium difficile QCD-66c26] gi|255094558|ref|ZP_05324036.1| two-component response regulator [Clostridium difficile CIP 107932] gi|255102817|ref|ZP_05331794.1| two-component response regulator [Clostridium difficile QCD-63q42] gi|255316313|ref|ZP_05357896.1| two-component response regulator [Clostridium difficile QCD-76w55] gi|255518973|ref|ZP_05386649.1| two-component response regulator [Clostridium difficile QCD-97b34] gi|255652153|ref|ZP_05399055.1| two-component response regulator [Clostridium difficile QCD-37x79] gi|260685121|ref|YP_003216406.1| two-component response regulator [Clostridium difficile CD196] gi|260688779|ref|YP_003219913.1| two-component response regulator [Clostridium difficile R20291] gi|115252664|emb|CAJ70507.1| Two-component response regulator, CheY family [Clostridium difficile] gi|260211284|emb|CBA66849.1| two-component response regulator [Clostridium difficile CD196] gi|260214796|emb|CBE07526.1| two-component response regulator [Clostridium difficile R20291] Length = 230 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 38/228 (16%), Positives = 84/228 (36%), Gaps = 11/228 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD ++D + G ++ + + + ++ +E Sbjct: 6 LVVDDEKEIRDLIEIYLLNSGYNVIKAEDGKEALDILKKENIHLMILDIM--MPKMDGIE 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-------REILARVAAI 115 + R +R +P++ +S + +G DD + KP + + ++ R Sbjct: 64 VCRKVRESLNIPILMLSAKSEDMDKIQGIMTGADDYLTKPFNPLELTVRVKSLIRRAYYF 123 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + G + + + V G L RE IL L N+G+ + +IF Sbjct: 124 SGANNEDKDVIKVGVVIIDKEKHSVTVAGNEIILTSREFDILYLLANNKGRVYSTEEIFE 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 ++ N V H+S++R K+ G + + +GY I+ Sbjct: 184 KVWKEK-YYQSNNTVMVHMSRIRDKIEKYTDGEKIIHTVWGVGYKIEK 230 >gi|329939379|ref|ZP_08288715.1| putative two-component system response regulator [Streptomyces griseoaurantiacus M045] gi|329301608|gb|EGG45502.1| putative two-component system response regulator [Streptomyces griseoaurantiacus M045] Length = 237 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 43/223 (19%), Positives = 86/223 (38%), Gaps = 8/223 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++ +D + +G + R D+ ++ G L+ Sbjct: 2 LIAEDDPRQAEVLRLYLDAEGYETVVAHDGRAAVDAARRLRPDLLVLDVM--MPGVDGLD 59 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + RI+R + +P++ ++ + L D G DD + KP RE++ARV + RR++ + Sbjct: 60 VCRILRQETAMPILMLTARSNEDDLLLGLDLGADDYIGKPYSPRELMARVRTLLRRVERA 119 Query: 123 NNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 R + + V + E +L L A G+ + Q+ Sbjct: 120 VPRRDGVLRVDGLTVDPLRHEVWVDDRLVDCTAGEFTVLATLAAEPGRVFTRQQLLERTR 179 Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 G +D A + ++ HI LRKK+ + + + +GY + Sbjct: 180 G-WDTAPTQRTIDMHIMHLRKKVERDPRRPARLLTVHGIGYKL 221 >gi|290352129|dbj|BAI78775.1| putative two-component response regulator [Streptococcus pyogenes] Length = 228 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 48/224 (21%), Positives = 91/224 (40%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + +G + + D+ ++ L Sbjct: 5 ILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLML--PEMDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R ++ ++ ++ S+ + D G DD + KP E+LAR+ AI+RR + Sbjct: 63 EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122 Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + R + PL +RE +L LM N + + + ++ S Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEIPLTKREYDLLNILMTNMNRVMTREELLSN 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +DEAVE NVV+ +I LR K+ + + R +GY I Sbjct: 183 VW-KYDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225 >gi|229097379|ref|ZP_04228341.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock3-29] gi|229103467|ref|ZP_04234149.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock3-28] gi|229116374|ref|ZP_04245764.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock1-3] gi|228667206|gb|EEL22658.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock1-3] gi|228679963|gb|EEL34158.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock3-28] gi|228686190|gb|EEL40106.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock3-29] Length = 215 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 38/220 (17%), Positives = 94/220 (42%), Gaps = 11/220 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++ DD + A F +G + E + + D++ ++ + Sbjct: 4 LIADDEQDMLKILKAYFEKEGFEVLLAKDGEEALQIFYDEKIDLAILDWM--MPKHSGIT 61 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + I+ +S V ++ ++ + L SG D+ V KP H ++ R ++L Sbjct: 62 VCQEIKKNSSVRVLMLTAKSESEDELAALQSGADEYVKKPFHPGVLITRA----KKLVQQ 117 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 ++ + +++ + + E +++ + ++G + + ++ ++G FD Sbjct: 118 DDVIQVQDVKINFAKNKVYKNDIELDITKTELELIKCFLNHKGMILTRKKLLDIVWG-FD 176 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 EE V++H+ +LRKK+ + + + R LGYS++ Sbjct: 177 YFGEERTVDTHVRRLRKKIGE----NIIKTHRGLGYSLEE 212 >gi|212716132|ref|ZP_03324260.1| hypothetical protein BIFCAT_01047 [Bifidobacterium catenulatum DSM 16992] gi|212661499|gb|EEB22074.1| hypothetical protein BIFCAT_01047 [Bifidobacterium catenulatum DSM 16992] Length = 242 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 42/228 (18%), Positives = 87/228 (38%), Gaps = 16/228 (7%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + +G + + ++ R D+ ++ L LE Sbjct: 16 LVVEDEPTLATAIAQRITAEGWTARVASDGASAVQAAATLRPDLVIMDIML--PVMDGLE 73 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + I A VP++ ++ + +G DD + KP RE++AR A+ RR+ + Sbjct: 74 ATKRIVAERPVPVLILTARDDEADKVIGLGAGADDYMTKPFSMRELIARCKALLRRVDRA 133 Query: 123 NNRAETGPIR---------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 A+ + R V G+ L E +L L + + ++ Sbjct: 134 KVIAKNSENEKLLDFGSLVIDPAQRIVTVNGKQVHLTPTEFDLLATLARKPKSVLTREKL 193 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ D + V+SH+ LR KL +K + + +GY+ + Sbjct: 194 LEEVWDWVDASG-TRTVDSHVKALRHKLGSKT----IRTVHGVGYAFE 236 >gi|323972872|gb|EGB68071.1| heavy metal response regulator [Escherichia coli TA007] Length = 290 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 50/219 (22%), Positives = 97/219 (44%), Gaps = 3/219 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D ++ + G ++ + +L + ++ L G Sbjct: 40 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIML--PGMDGW 97 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + +R Q P+I ++ S+ + DSG +D + KP E+LARV A R+ Sbjct: 98 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 157 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 N+ E +R+ S + L R+E ++L L + G+ + +T I S I+G+ Sbjct: 158 LNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 216 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + N V+ I +LR K+ + + + R +GYS Sbjct: 217 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 255 >gi|313899606|ref|ZP_07833114.1| putative sensory transduction protein RegX3 [Clostridium sp. HGF2] gi|312955591|gb|EFR37251.1| putative sensory transduction protein RegX3 [Clostridium sp. HGF2] Length = 229 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 33/222 (14%), Positives = 84/222 (37%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 + ++D + G + +G + + D+ ++ L Sbjct: 5 LLFVEDDQAIAMGLVYTLKKEGYEVVWCDHKRSALQQLDQQTFDLLLLDVGL--PDGSGY 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI-LARVAAIYRRLK 120 ++ ++ VP++ ++ + D G DD + KP E+ + R + Sbjct: 63 DICTYAKSRQDVPVLFLTALDDEGNVVMGLDMGGDDYITKPFRINELLSRMRSVQRRYHR 122 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + + ++ + E L E R+L + + + ++++Q+ I+ Sbjct: 123 QEEDIVQIQYLSIYPKQGKVYREQEEVLLTALEYRLLMVFINHPQQVLSRSQLLEGIWDA 182 Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 + V +N + +I +LR+KL + + + R LGY ++ Sbjct: 183 AGDFVNDNTLTVYIKRLREKLERDPQNPSIIVTVRGLGYRLE 224 >gi|311031098|ref|ZP_07709188.1| two-component response regulator [Bacillus sp. m3-13] Length = 223 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 45/224 (20%), Positives = 89/224 (39%), Gaps = 11/224 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + +G + + D+ ++ L L Sbjct: 4 ILIIEDEKKIARVLQLELEHEGYETDAAFTGTSGLEKFKENHWDLVLLDVML--PELSGL 61 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIY 116 E+ R IRA P+I ++ S+ + D G +D V KP + A + + Sbjct: 62 EVLRRIRATDTSTPVILLTARNSIPDKVSGLDLGANDYVTKPFEIEELLARVRASLRTVQ 121 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + +V R+ E L +E +L Y + N+G+ + + QI + Sbjct: 122 SGTEKNAGVLTVNDWKVNEKTREVSRGDEHVDLTPKEFDLLVYFIENKGQALNREQILNR 181 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G FD + N+V+ ++ LRKKL + + + R +GY + Sbjct: 182 VWG-FDYYGDTNIVDVYVRHLRKKLD---LSEVLVTLRGVGYRL 221 >gi|302530673|ref|ZP_07283015.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. AA4] gi|302439568|gb|EFL11384.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. AA4] Length = 222 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 46/221 (20%), Positives = 90/221 (40%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G ++ ++ W D ++ L Sbjct: 3 LLIVEDELEFAETLRRGLVAEGFTVNVAHTGRDGLWSAMEHDYDAVVLDIML--PELSGY 60 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ + +RA + P++ ++ D FD G DD ++KP +LAR+ A+ RR Sbjct: 61 EVLKRLRAAENWTPVLMLTAKDGEYDEADAFDLGADDYLSKPFSFVVLLARLRALLRRGA 120 Query: 121 VSNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + T R L RE +LE+L+ +G + K +I ++ Sbjct: 121 PARPAVLTAGDLQLDPAARTVHRGETRIELTAREFGLLEFLLRRQGAALTKNEILGHVWD 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +ENVVE ++ LR+K+ G +++ R +GY + Sbjct: 181 AH-YEGDENVVEVYVGYLRRKIDAPFGTRTIETVRGVGYRL 220 >gi|148378611|ref|YP_001253152.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 3502] gi|153931129|ref|YP_001382998.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|153935657|ref|YP_001386545.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|153941463|ref|YP_001389974.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|148288095|emb|CAL82163.1| two-component response regulator [Clostridium botulinum A str. ATCC 3502] gi|152927173|gb|ABS32673.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|152931571|gb|ABS37070.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|152937359|gb|ABS42857.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|295318058|gb|ADF98435.1| DNA-binding response regulator [Clostridium botulinum F str. 230613] gi|322804930|emb|CBZ02489.1| two-component response regulator [Clostridium botulinum H04402 065] Length = 230 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 43/229 (18%), Positives = 89/229 (38%), Gaps = 11/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++D ++G ++ + E + ++ ++ L Sbjct: 5 ILVVDDEKEIRDLLEINLINEGYNVFKASCGEEALEILEREEVNLMVLDIM--MPDMDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAA 114 E+ + R +P++ +S ++ +G DD V KP +H E+ R Sbjct: 63 EVCKRAREKYSIPILMLSAKVEDMDRIEGIMTGADDYVCKPFNHLELTVRIRALLRRAYF 122 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + ++++S+N + + + L RE IL L NRG + +IF Sbjct: 123 LNTKMQISDNIIRIESMVIDKKQHKVTINDNEIDLTAREFEILYLLANNRGMVFSAEEIF 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222 ++ N V H+S+LR K+ G + + +GY I+ Sbjct: 183 EKVWKER-YFQSNNTVMVHMSRLRDKIEQHMEGSKVIHTVWGVGYKIEK 230 >gi|66048024|ref|YP_237865.1| heavy metal response regulator [Pseudomonas syringae pv. syringae B728a] gi|63258731|gb|AAY39827.1| Heavy metal response regulator [Pseudomonas syringae pv. syringae B728a] gi|330972950|gb|EGH73016.1| heavy metal response regulator [Pseudomonas syringae pv. aceris str. M302273PT] Length = 224 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 39/223 (17%), Positives = 87/223 (39%), Gaps = 5/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G ++ N+ +L DV ++ L Sbjct: 3 ILVVEDEPKTAEYMHQGLTESGYVVDIANTGLDGLYLAQHQAYDVVILDVNL--PEMDGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119 E+ +R ++ ++ L+ + + G DD + KP E+ R Sbjct: 61 EVLSRLRKTVNTRIMMVTARGRLEEKVKGLEMGADDYLVKPFEFPELLARVRTLMRRSEQ 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + G + + + L +E +L LM + G+ +++TQI S ++ Sbjct: 121 TTTAKVLQVGDLELDQGRHRAFRGKQRIDLTTKEFALLHLLMRHSGEVMSRTQIISLVWD 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + + + NVVE I +LR K+ + + + R +GY ++ Sbjct: 181 M-NFDCDTNVVEVSIRRLRAKIDDPFETKLIHTLRGVGYVLEV 222 >gi|17231280|ref|NP_487828.1| two-component response regulator [Nostoc sp. PCC 7120] gi|17132922|dbj|BAB75487.1| two-component response regulator [Nostoc sp. PCC 7120] Length = 238 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 40/225 (17%), Positives = 87/225 (38%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V++ +E + L + ++ L Sbjct: 11 ILVVDDDFGVRNLIYRFLSRK-YQIESAADGKTALSLFEQFNPALVILDWNL--PDTSGY 67 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI----HHREILARVAAIYR 117 L + +++ + V ++ ++ + +G DD + KP + A + I Sbjct: 68 SLCQEMQSRNNVLVMILTGRTEEADKIRILAAGADDFITKPFSLAEIEVRVQALLRRIRS 127 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + R + + +GR+ + + L E IL +L ++ G+ ++ Q+ I Sbjct: 128 IKPSPSQRLIFKQLAINPEGREVTLNDKPLNLTALEFNILHFLASHPGQAWSRPQLIQKI 187 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221 +G D + VV+ HI +LRKKL + + + + R GY + Sbjct: 188 WGC-DYVGDGRVVDVHIGQLRKKLESDTSIPEFIKTVRGYGYKFE 231 >gi|331268770|ref|YP_004395262.1| winged helix family two component transcriptional regulator [Clostridium botulinum BKT015925] gi|329125320|gb|AEB75265.1| two component transcriptional regulator, winged helix family [Clostridium botulinum BKT015925] Length = 229 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 52/226 (23%), Positives = 91/226 (40%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + L G +++ S S + ++ L G Sbjct: 6 ILVIEDDNDINKMLSKLIEKKGYNVKQAYSGTEGMLYIESLDFQLILLDLML--PGMTGE 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115 EL + IR ++P+I IS + L+ F G DD V KP E+ R Sbjct: 64 ELIKKIRKTKKLPIIVISAKLDKEIKLELFKLGADDYVTKPFDIDELSARIDANLRRYID 123 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + I + + ++ V G+ L RE ILE L+ + K +K +F Sbjct: 124 FNNSSNGEKDIVHKDIILNKEAKEVLVSGQELSLTSREFNILELLLTHPKKVFSKANLFE 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220 +++G + +EN V HIS LR KL + + +++ +GY + Sbjct: 184 SVWG-DEYLGDENTVNVHISNLRNKLNKASPNEEYIETVWGMGYKL 228 >gi|290352199|dbj|BAI78810.1| putative two-component response regulator [Streptococcus pyogenes] Length = 228 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 46/224 (20%), Positives = 89/224 (39%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + +G + + D+ ++ L Sbjct: 5 ILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLML--PEMDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R ++ ++ ++ S+ + D DD + KP E+LAR+ AI+RR + Sbjct: 63 EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRSADDYIVKPFAIEELLARIRAIFRRQDI 122 Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + R + L +RE +L LM N + + + ++ S Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +DEAVE NVV+ +I LR K+ + + R +GY I Sbjct: 183 VW-KYDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225 >gi|227432429|ref|ZP_03914417.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227351795|gb|EEJ42033.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 234 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 38/226 (16%), Positives = 79/226 (34%), Gaps = 12/226 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +G + + + + ++ L + Sbjct: 8 ILVVDDETAIATLLQYNLQQNGYEVTVASDGLSAYQKAKEQQFNAILLDLML--PEMDGM 65 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVA 113 + + +R P+I ++ + + G DD + KP RE++ R Sbjct: 66 TVLKQLRQDKVSTPIILVTAKGDELDRVLGLELGADDYITKPFSPREVVARLKAVLRRSQ 125 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 K + + + + V L RE +L Y G+ + + I Sbjct: 126 VSTDTYKTDEMVISIQDLLINDSKKTVMKENIVLSLTPREYDLLLYFAQRLGRVIDRETI 185 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218 +A++G ++ E +V+ HIS LR K+ N + + R GY Sbjct: 186 LTAVWG-YEYTGESRMVDMHISNLRDKIESNPKAPKILKTVRGFGY 230 >gi|199597340|ref|ZP_03210771.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus rhamnosus HN001] gi|258539273|ref|YP_003173772.1| two-component response regulator [Lactobacillus rhamnosus Lc 705] gi|199591856|gb|EDY99931.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus rhamnosus HN001] gi|257150949|emb|CAR89921.1| Two-component response regulator [Lactobacillus rhamnosus Lc 705] Length = 243 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 43/237 (18%), Positives = 88/237 (37%), Gaps = 19/237 (8%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D V + F + + E A + I L + Sbjct: 3 LLMIEDNTSVAEMMAMFFQKEKWEVVNAYDGEEGLAKFKEAPDSFDIITLDLNLPKMDGM 62 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118 ++ + IR S+ PLI ++ + + + G DD V KP ++AR+ A++RR Sbjct: 63 QVAKEIRQISETVPLIMLTARDTESDQVLGLELGADDYVTKPFSPITLIARIKALHRRAE 122 Query: 119 --------------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANR 164 + ++ L +E +L L + Sbjct: 123 VGAEAGAEQATPETKADGFDVETDHFKLSTKTREAYLNGKQIEGLTPKEFDLLHTLSKSP 182 Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + ++ Q+ ++ ++ +E V++HI KLR+K+ K+G + + +GY D Sbjct: 183 KQVFSREQLLQLVWD-YEYYGDERTVDAHIKKLRQKIE-KVGPQIIQTVWGVGYKFD 237 >gi|303242269|ref|ZP_07328756.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] gi|302590179|gb|EFL59940.1| two component transcriptional regulator, winged helix family [Acetivibrio cellulolyticus CD2] Length = 230 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 39/227 (17%), Positives = 88/227 (38%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G +E + + ++ ++ L Sbjct: 5 ILIVEDEVTIAELQRDYLEISGYDVEIEKTGDKGLSRSLKEDFNLIILDLML--PNIDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR +P++ +S + G DD + KP E++ARV A R + Sbjct: 63 EICRKIRESKNIPILMVSARKEDIDKIRGLGLGADDYITKPFSPSELVARVTAHISRYER 122 Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + D R ++ + L +E +L ++ N + ++ ++F Sbjct: 123 LIGSKEKKTETVNIRNLIIDKDSRRVWLENQEITLTGKEFDLLLFMAENPNRVFSREELF 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 I+G+ D + + V HI K+R+K+ + +++ +GY Sbjct: 183 DNIWGM-DACGDISTVTVHIKKVREKIELDNSKPQYIETIWGIGYRF 228 >gi|293190389|ref|ZP_06608821.1| DNA-binding response regulator PhoP [Actinomyces odontolyticus F0309] gi|292820973|gb|EFF79928.1| DNA-binding response regulator PhoP [Actinomyces odontolyticus F0309] Length = 240 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 46/224 (20%), Positives = 91/224 (40%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++D + G + ++R D+ ++ L Sbjct: 16 LLVVDDEPNIRDLLASSLRFAGFDVITAEDGSGAFHEAQASRPDLIVLDVML--PDMDGF 73 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI---HHREILARVAAIYR 117 + R +R A P++ ++ ++ + G DD V KP + + Sbjct: 74 TVTRRLRDAGITTPVLFLTARDDMRDKIQGLTVGGDDYVTKPFGLEEVVARIRAILRRTM 133 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + G + + D + G L E ++L YL+ N G+ V+K QI + Sbjct: 134 GSEEDDAFLRVGDLVIDEDAHEVTRAGVPIDLSPTEFKLLRYLVINAGRVVSKMQILDHV 193 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220 + +D E +VES+IS LR+KL + + + +KR +GY + Sbjct: 194 W-EYDWDGEVAIVESYISYLRRKLAVEGASGELIHTKRGVGYIL 236 >gi|228934444|ref|ZP_04097279.1| hypothetical protein bthur0009_29000 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228825081|gb|EEM70878.1| hypothetical protein bthur0009_29000 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 245 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 46/221 (20%), Positives = 91/221 (41%), Gaps = 7/221 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + + G ++ + + + + ++ L G Sbjct: 30 ILLVEDDEHICNAVKVFLSGAGYKVDACFNGDEAHTKFYDSTYQLVILDILL--PGMNGH 87 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL R R + P++ ++ + + FD+ DD V KP + +L RV A+ RR Sbjct: 88 ELLREFRKLNNTPVLMMTALSDDENQIRAFDAEADDYVTKPFKIQLLLKRVEALLRRSGA 147 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 G + + + E L +E IL L+ N G+ ++ I S ++G + Sbjct: 148 VAKELHYGKLTILPEDFKVFYDDEELLLTLKEFEILMLLVQNNGRTLSHEVILSRVWG-Y 206 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 D + + V +HI LR KL + + + + R +GY ++ Sbjct: 207 DFDGDGSTVHTHIKNLRAKLPD----NIIKTVRGVGYRLEE 243 >gi|254431718|ref|ZP_05045421.1| two component transcriptional regulator, winged helix family [Cyanobium sp. PCC 7001] gi|197626171|gb|EDY38730.1| two component transcriptional regulator, winged helix family [Cyanobium sp. PCC 7001] Length = 234 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 47/221 (21%), Positives = 98/221 (44%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A + + G ++ ++ D+ ++ L L Sbjct: 3 ILVVEDDAGILRFIRQGLTEAGYVVDSAADGRRGVECALTSDYDLIVLDVLL--PELDGL 60 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119 + R +R Q P++ ++ ++Q + ++G DD + KP E+LAR+ A + R Sbjct: 61 SVLRQLRGQGLQTPVLLLTALDAVQDRVQGLNAGADDYLVKPFDFTELLARLRALMRRPP 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S+ G + + + R + L RE +LEYLM + + +++TQI ++ Sbjct: 121 LQSDVALRVGDLELDAAQRLVKRGERPIELSPREFSLLEYLMRHPNQVLSRTQIAQHVWS 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 FD + V++ +I LR+K+ + + R +GYS+ Sbjct: 181 -FDFYGDYKVIDVYIGYLRRKIDRHGASSMIHTVRGVGYSM 220 >gi|118480301|ref|YP_897452.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|118419526|gb|ABK87945.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] Length = 241 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 42/226 (18%), Positives = 89/226 (39%), Gaps = 12/226 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +++ +G + + DV ++ L Sbjct: 21 ILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEG-PDVLILDVML--PDTDGY 77 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL R+ R +P++ ++ + L G DD V KP ++ E++ RV + RR+K Sbjct: 78 ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRVK 137 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEV-----FPLPRRERRILEYLMANRGKRVAKTQIFS 175 + I P+ + L RE + + ++N + + ++ Sbjct: 138 KTEVTVSHEVIEAGEITICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 197 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G F+ V+ + +LRKKL N + + + +GY +D Sbjct: 198 KVWG-FEYIGNTRAVDIMVQRLRKKLGNSG--EYIKTIYGVGYKLD 240 >gi|88802016|ref|ZP_01117544.1| response regulator DrrA [Polaribacter irgensii 23-P] gi|88782674|gb|EAR13851.1| response regulator DrrA [Polaribacter irgensii 23-P] Length = 232 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 40/223 (17%), Positives = 88/223 (39%), Gaps = 9/223 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 +L+DD + + ++G + + + + ++ + G + Sbjct: 8 ILLVDDEPDIIEIVGYNLRNEGYQIFTATNGQEAIKSAKKNIPHLILLDIMMPEMDGIEA 67 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117 E R I + V + ++ + + F++G DD + KPI + ++++V + Sbjct: 68 CEKIRKISSLENVLIAFLTARGEDYSQVAGFEAGADDYITKPIKPKVLVSKVKSLLRRLK 127 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 K + G I + + G+ LPR+E + L + GK + I + Sbjct: 128 SEKQNEETVTIGDIVIDREEYVVFKAGKRISLPRKEFELFSLLTSKPGKVFKREVILDTV 187 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G + V ++ HI KLR+K+ + D + + +GY Sbjct: 188 WGN-EVVVGGRTIDVHIRKLREKIGD----DHFKTVKGVGYKF 225 >gi|325840792|ref|ZP_08167156.1| sensory transduction protein RegX3 [Turicibacter sp. HGF1] gi|325490162|gb|EGC92499.1| sensory transduction protein RegX3 [Turicibacter sp. HGF1] Length = 228 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 54/223 (24%), Positives = 93/223 (41%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D LV D A + + + + + D+ ++ L K Sbjct: 3 ILLIEDEVLVLDALKAYLEREQYRVFVATTGNEGLTIFEKEKIDLVILDLML--PDMKGE 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IRA S V L ++ SL+ + + G DD + KP RE++AR+ + RR+ Sbjct: 61 EICQQIRAISDVYLFMLTAKGSLEHRILGLNLGADDYLVKPFSPRELVARIKTVVRRING 120 Query: 122 SNNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 R +VQ E+ P E +L LM N+GK + + Q+ + I Sbjct: 121 PLQNINLYDDGYLLIDQSKRIVKVQEEIVPFTTTEFNLLVLLMDNKGKVLTREQLINQIL 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 G FD + ++ HI +RKK+ + + +GY Sbjct: 181 G-FDFNGYDRTIDVHIKNIRKKIEQDTKQPRYIVTVMKVGYKF 222 >gi|318061543|ref|ZP_07980264.1| two-component system response regulator [Streptomyces sp. SA3_actG] Length = 240 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 45/232 (19%), Positives = 91/232 (39%), Gaps = 21/232 (9%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 + ++D ++++ G + + D++ ++ + G + Sbjct: 14 LFVEDDDVIREATQLALERVGFRVTAVPDGLQGLESFRAGAPDIALLDVMV--PGMDGVS 71 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R IR S VP+I +S + ++G DD V KP ++AR+ A+ RR + Sbjct: 72 LCRRIRDESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDVSVLVARLRAVMRRFGHA 131 Query: 123 NNRAETGPIRV--------------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 A ++G + GE L E R+L A G + Sbjct: 132 GGGARQAVEEEAAAAGPLRFGDLEVDTEGMEVRRGGERIALTPTEMRLLLEFSAAPGTVL 191 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ ++ ++ + + VV+ H+ +LR K+ G D +++ R GY + Sbjct: 192 SRDRLLERVWD-YGWGGDTRVVDVHVQRLRAKI----GQDRIETVRGFGYKL 238 >gi|297563468|ref|YP_003682442.1| two component transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296847916|gb|ADH69936.1| two component transcriptional regulator, winged helix family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 221 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 52/221 (23%), Positives = 95/221 (42%), Gaps = 9/221 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + G + + S+ D+ ++ L G Sbjct: 3 ILVVEDEEGIVSFVRRGLETAGYQVLTAADGIDGLTMALSSDVDLVVLDLGL--PGIPGE 60 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +RA VP+I ++ ++ + D+G DD + KP E+LARV A R Sbjct: 61 EVLRRLRARRPSVPVIVLTAKDAVSDRVANLDAGADDYMVKPFSVSELLARVRARLRGGG 120 Query: 121 VSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 G + + R V+G L RE +LE L+ + + ++ Q+ ++G Sbjct: 121 QERGDVLAAGGVVLDLGARTASVEGRTVNLSAREFALLEVLIRHPTQVFSRPQLLDRVWG 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D NVVE ++S+LR+KL G + + + R GY + Sbjct: 181 -YDFDGASNVVEVYVSQLRRKL----GSERIQTVRGAGYRL 216 >gi|257124968|ref|YP_003163082.1| two component transcriptional regulator, winged helix family [Leptotrichia buccalis C-1013-b] gi|257048907|gb|ACV38091.1| two component transcriptional regulator, winged helix family [Leptotrichia buccalis C-1013-b] Length = 229 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 48/224 (21%), Positives = 90/224 (40%), Gaps = 8/224 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++ DD + + + + E + D+ ++ + + Sbjct: 5 LIADDNKQIVSILSEYCKKNNFIVSTVFNGEDALKEVEENKFDIVLLDVM--MPKKDGFD 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +R S VP+I I+ + + G DD + KP EI+AR+ AI RR+ Sbjct: 63 VCREVRKFSNVPIIMITARGEDYEKIMGLEIGADDYIVKPFSPGEIIARINAILRRITPK 122 Query: 123 NNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 N+ + + + ++ E+ L ++E IL L N+ K + + I+ Sbjct: 123 NDDSEKIFSFDNLEIDLNNFTVKINNEIISLTKKEIEILWTLATNQNKVFTRENLLDLIW 182 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221 G FD E V++HI +LR K+ N + + +GY D Sbjct: 183 G-FDYFGESRTVDTHIKRLRAKMDNYEHKKWNIKTIWGVGYKFD 225 >gi|158318231|ref|YP_001510739.1| two component transcriptional regulator [Frankia sp. EAN1pec] gi|158113636|gb|ABW15833.1| two component transcriptional regulator, winged helix family [Frankia sp. EAN1pec] Length = 231 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 51/224 (22%), Positives = 94/224 (41%), Gaps = 9/224 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + +G + R D ++ L L Sbjct: 8 ILVVDDENTLSELLSMALRYEGWEVRTAQDGRGALRAARDFRPDAVVLDIML--PDMDGL 65 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +RA S P++ ++ +++ + +G DD V KP E++AR+ + RRL Sbjct: 66 EVLRKLRADSPEVPVLFLTARDAVEDRVAGLTAGGDDYVTKPFSLEELVARLRGLLRRLH 125 Query: 121 VSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 S G + + + R+ G L E +L Y M N + ++K QI Sbjct: 126 RSTIWDGAVLVVGDLIMNEESREVTRAGREIRLTATEFELLRYFMRNPRRVLSKAQILDR 185 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +D + NVVE ++S LRKK+ + + + R GY + Sbjct: 186 VW-NYDFGGQANVVELYVSYLRKKI-DAGRPAMIHTMRGAGYVL 227 >gi|332976206|gb|EGK13070.1| DNA-binding response regulator [Desmospora sp. 8437] Length = 227 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 46/223 (20%), Positives = 93/223 (41%), Gaps = 9/223 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 +++DD + + ++ S+ + L + D+ ++ + G +V Sbjct: 5 ILIVDDEEEMLSMLTLILEEE-FSVTPASDGVEAVKLLQNRVFDLCILDIMMPRLDGMEV 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L + +++P+I +S + + + G DD + KP E++ARV ++ RR Sbjct: 64 LHVLNR--EQNRIPVILLSARADTRDRVAGLEGGADDYITKPFEPAELVARVKSLLRRAG 121 Query: 121 VSNNR---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 IR+ GR + L R E +L L + G+ ++ ++ I Sbjct: 122 SGPGMGGAEPMPGIRIDHTGRTAFAGEKELRLTRTEFDLLATLAGSPGRAWSREELVERI 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219 +G +D E V++H+ LR+KL+ D +D+ GY Sbjct: 182 WG-WDFPGEVRTVDTHVKNLREKLKQAGASPDLIDTVWGYGYK 223 >gi|294814187|ref|ZP_06772830.1| Response regulator [Streptomyces clavuligerus ATCC 27064] gi|326442585|ref|ZP_08217319.1| winged helix family two component transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|294326786|gb|EFG08429.1| Response regulator [Streptomyces clavuligerus ATCC 27064] Length = 239 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 51/225 (22%), Positives = 95/225 (42%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ +D +G ++ + + R D+ ++ L Sbjct: 5 ILVAEDDVKQARLIRIYLEREGNEVQIVSDGRSAIDRARATRPDLIVLDVM--MPHVDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R++R SQ+P++ ++ + + L D G DD + KP RE+ ARV A+ RR + Sbjct: 63 DVCRVLRTESQIPILLLTARTTEEDMLLGLDLGADDYMTKPYSPRELAARVRALLRRARA 122 Query: 122 SNNRAETG-----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + A G + + + GE L +E IL+ L G+ + QI Sbjct: 123 AAVSAGAGVLAVGELEIDPARYEVRAGGEPVVLTGKEFAILQLLAEEPGRVFTRGQIIDR 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 ++G FD+ V E V++H+ LR+KL V++ GY + Sbjct: 183 VFG-FDQNVLERTVDAHVMNLRRKLEADGRRPRVVETVYGRGYRL 226 >gi|268316932|ref|YP_003290651.1| two component transcriptional regulator, winged helix family [Rhodothermus marinus DSM 4252] gi|262334466|gb|ACY48263.1| two component transcriptional regulator, winged helix family [Rhodothermus marinus DSM 4252] Length = 231 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 48/225 (21%), Positives = 97/225 (43%), Gaps = 8/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + ++G ++ E ++ D ++ L Sbjct: 3 ILLVEDDERLARALARGLREEGYQVDRVADGVEAEARVQASHYDALIVDWRL--PRMDGQ 60 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L R +R +P++ ++ L+ + D+G DD + KP E+LAR+ A+ RR Sbjct: 61 TLVRRLREAGYQMPILMLTALDDLEHRVAGLDAGADDYLGKPFAFEELLARLRALLRRSP 120 Query: 121 VSNNRAETG--PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 V P+ + R V V PL +E +L +L + G+ +++T+I ++ Sbjct: 121 VWQATDVIRLGPLEINERRRQVRVGEYVLPLRPKEYDLLRFLARHPGEVLSRTRIAEQVW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY--SID 221 G V +N ++ +S LR+KL +++ R +GY ++ Sbjct: 181 GDP-FYVSDNTIDVTVSGLRQKLSEATPALQIETVRGVGYALRLE 224 >gi|218246258|ref|YP_002371629.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 8801] gi|257059308|ref|YP_003137196.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8802] gi|218166736|gb|ACK65473.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8801] gi|256589474|gb|ACV00361.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8802] Length = 225 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 46/222 (20%), Positives = 97/222 (43%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + + D +E E L D+ ++ L + Sbjct: 3 ILLVEDDENIALPVVEDLSDRHYIVEVAQDGEMAFELLDVYEYDLILLDIML--PKIDGI 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119 L R +R+ P++ ++ ++ + D+G DD + KP +E+ AR+ A + R Sbjct: 61 SLCRRLRSQGCQTPILMLTARDTVSDRVAGLDAGADDYLVKPFALQELSARIRALMRRGD 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 G + + + + Q + L +E ++LE+ + + + +TQI ++ Sbjct: 121 SSLPPVLTWGNLSLNPNTCEVFYQEQPLSLSPKEYKLLEFFLRHPHRVFNRTQILDHLW- 179 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 ++ EE V++HIS LR+K++ G D +++ LGY + Sbjct: 180 PLEQLPEEATVKAHISSLRQKIKAVGGVPDLIETVYGLGYRL 221 >gi|302521973|ref|ZP_07274315.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. SPB78] gi|318059392|ref|ZP_07978115.1| two-component system response regulator [Streptomyces sp. SA3_actG] gi|318079003|ref|ZP_07986335.1| two-component system response regulator [Streptomyces sp. SA3_actF] gi|302430868|gb|EFL02684.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. SPB78] Length = 219 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 49/222 (22%), Positives = 97/222 (43%), Gaps = 9/222 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + G +G +++ + + D+ ++ L G Sbjct: 3 LLIVEDERRLARSLALGLGAEGYAVDVAHDGTEGLHRATEGGYDLIVLDIML--PGMNGY 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + +RA P++ ++ + D+G DD + KP + + ARV A+ RR Sbjct: 61 RVCAALRAAGDDTPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLRARVKALLRRRA 120 Query: 121 VSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 G +R+ + R + GE PL +E +LE+L+ G+ V+K I ++ Sbjct: 121 TGAPPVRELGALRLDTGARRVRLAGEEIPLTAKEYAVLEHLVLRAGQVVSKADILEHVWD 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 F + + N+VE ++S LR+KL G + + R GY ++ Sbjct: 181 -FAYSGDPNIVEVYVSTLRRKL----GAGLIRTVRGAGYLLE 217 >gi|170757618|ref|YP_001779916.1| regulatory protein VanR [Clostridium botulinum B1 str. Okra] gi|169122830|gb|ACA46666.1| regulatory protein VanR [Clostridium botulinum B1 str. Okra] Length = 231 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 49/229 (21%), Positives = 88/229 (38%), Gaps = 13/229 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD A + + +DG + + + + + + ++ G L+ Sbjct: 5 LIVDDEAEIIELMEVYLLNDGYKVFKATNGLDALNIINEEKIHLVILDIM--MPGIDGLQ 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + IR +P+I +S + +G DD + KP E+LARV A RR Sbjct: 63 VCMKIRKEYNIPIIMVSAKGQEMDKIQGLSTGADDYIVKPFSTMELLARVKAQIRRYVYL 122 Query: 123 NNRAETGPIRV---------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 N + + + G L E +IL L +N GK + I Sbjct: 123 NENHKQLDNKDVIEIKGITINKRNHKVHLFGTELKLTPTEYKILLLLASNSGKVFSAEDI 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + I+ N V +HI +LR+KL + V++ +GY I+ Sbjct: 183 YKEIWAEKYFEGN-NTVMAHIWRLREKLEDNPKEPKIVETVWGVGYKIE 230 >gi|163847395|ref|YP_001635439.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222525241|ref|YP_002569712.1| winged helix family two component transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163668684|gb|ABY35050.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222449120|gb|ACM53386.1| two component transcriptional regulator, winged helix family [Chloroflexus sp. Y-400-fl] Length = 226 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 58/226 (25%), Positives = 90/226 (39%), Gaps = 9/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD L + G + + L D+ ++ Sbjct: 3 ILVVDDDIPSARMTSYLLEEAGYRVFRAHDASNILQLIEQHNPDLILLDVM--MPKIDGF 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR +S +P+I +S LQ + G DD + KP E+LARV A+ RR Sbjct: 61 EVCRQIRRNSDIPIIFLSARHQLQDRVMGLQIGGDDYLVKPFEPSELLARVEAVLRRRNA 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF-----PLPRRERRILEYLMANRGKRVAKTQIFSA 176 T + E + L E R+L YLM N G+ + TQI S Sbjct: 121 DVLNTSTRLSQGNITLDPVEHKVLFTDGRVVELTPLEFRLLYYLMKNSGRILNVTQILSK 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221 ++G +D E N+V +I +LR K+ V + R LGY + Sbjct: 181 VWG-YDYEGESNLVAVYIRRLRTKVEEDPDHPRHVITVRNLGYKFE 225 >gi|325524664|gb|EGD02663.1| phosphate regulon two-component regulatory system response regulator protein [Burkholderia sp. TJI49] Length = 233 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 45/226 (19%), Positives = 84/226 (37%), Gaps = 8/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++++D + + G + E + L S D+ ++ L G G Sbjct: 5 ILVVEDEPAISELISVNLQHAGHCPIRAYNAEQAQNLISDVLPDLVLLDWMLPGKSGIAF 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 R +P+I ++ Q + + G DD V KP +E++AR+ A+ RR Sbjct: 65 ARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRRRA 124 Query: 121 VSNNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + L E R+L + M + + ++TQ+ Sbjct: 125 PQLTEDVVSINGLRLDPATHRVAAHTDGSEIKLDLGPTEFRLLHFFMTHPERVHSRTQLL 184 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G VEE V+ HI +LR L+ +++ R GY + Sbjct: 185 DQVWGDH-VFVEERTVDVHIKRLRAALKPAGCDAMIETVRGSGYRL 229 >gi|269797012|ref|YP_003316467.1| CheY-like receiver domain/winged-helix DNA-binding domain-containing response regulator [Sanguibacter keddieii DSM 10542] gi|269099197|gb|ACZ23633.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Sanguibacter keddieii DSM 10542] Length = 225 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 45/221 (20%), Positives = 92/221 (41%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + DG +G +++ + W+ R D ++ G Sbjct: 3 ILVVDDEVRLVDGVRRGLEAEGFAVDVAANGVDGLWMAQEHRYDAIVLDIM--MPGMNGY 60 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + +R A P++ ++ ++ D+G DD ++KP + ++AR+ ++ RR Sbjct: 61 TVCERLRAAEDWTPILMLTAKDGEWDQVEALDTGADDFLSKPFSYAVLVARLRSLVRRGS 120 Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++ R L RE +LE+L+ N G V+K Q+ ++ Sbjct: 121 RERPVVLEAGDLQLDPAARRVRRGDVEIELTSREFAVLEFLIRNAGDVVSKRQVLDNVWD 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D + N+VE ++ LR K+ G +++ R GY + Sbjct: 181 -GDFEGDPNIVEVYVRHLRNKVDRPFGRASIETLRGAGYRL 220 >gi|302559265|ref|ZP_07311607.1| DNA-binding response regulator [Streptomyces griseoflavus Tu4000] gi|302476883|gb|EFL39976.1| DNA-binding response regulator [Streptomyces griseoflavus Tu4000] Length = 231 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 47/229 (20%), Positives = 95/229 (41%), Gaps = 18/229 (7%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 + ++D ++++ DG ++ + R D++ ++ + G + Sbjct: 8 LFVEDDDVIREATQLALERDGFAVTAMPDGLSGLEAFRTDRPDIALLDVMV--PGLDGVS 65 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R IR S VP+I +S + ++G DD V KP ++AR+ A+ RR + Sbjct: 66 LCRRIRDESMVPVIMLSARADAIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRRFGRA 125 Query: 123 NNRAETGPIR-----------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 N E + + G + G+ L E R+L A G +++ Sbjct: 126 NGGREEPAADAGGVLAFGELEIDTGGMEVRRAGQPVALTPTEMRLLLEFSAAPGTVLSRD 185 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ ++ + + VV+ H+ +LR K+ G D +++ R GY + Sbjct: 186 KLLERVW-EYGWGGDTRVVDVHVQRLRTKI----GQDRIETVRGFGYKL 229 >gi|253578241|ref|ZP_04855513.1| regulatory protein VanR [Ruminococcus sp. 5_1_39B_FAA] gi|251850559|gb|EES78517.1| regulatory protein VanR [Ruminococcus sp. 5_1_39BFAA] Length = 234 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 40/230 (17%), Positives = 84/230 (36%), Gaps = 14/230 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A +++G L +G ++ S D+ + ++ G + Sbjct: 7 ILVVEDDAAIREGVRILLEGEGYIVQEAEDGYQCLKKVSD---DIDLVILDIMMPGISGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILAR 111 + IR S VP++ ++ L +G DD + KP + Sbjct: 64 KTCEEIRKISHVPVLFLTAKSQESDKLLGLMAGGDDYLVKPFSYAELLARVKALLRRYHV 123 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + + K + E G ++V + + + L E RIL +M N K + Sbjct: 124 YSQTLQGEKTKEHWIEYGKVKVNTQCNEVFRNEKEISLREMEYRILLLMMENPKKVFSVK 183 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 ++ +++ N V HI +LR K+ + + + GY + Sbjct: 184 NLYESLWEEPFLYSSGNTVMVHIRRLRMKIEDDPQKPKMIQTVWGKGYRL 233 >gi|229076471|ref|ZP_04209433.1| DNA-binding response regulator [Bacillus cereus Rock4-18] gi|229099686|ref|ZP_04230613.1| DNA-binding response regulator [Bacillus cereus Rock3-29] gi|228683756|gb|EEL37707.1| DNA-binding response regulator [Bacillus cereus Rock3-29] gi|228706657|gb|EEL58868.1| DNA-binding response regulator [Bacillus cereus Rock4-18] Length = 223 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 45/226 (19%), Positives = 91/226 (40%), Gaps = 12/226 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +++ +G + + DV ++ L Sbjct: 3 ILVVDDESSIRNLIRMQLEMEGYEVLVAADGREALEKWNEG-PDVLILDVML--PDTDGY 59 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL R+ R +P++ ++ + L G DD V KP ++ E++ RV + RR+K Sbjct: 60 ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMSRRVK 119 Query: 121 VSNNRAETGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 A IR + R V G+ L RE + + ++N + + ++ Sbjct: 120 KEEVTASHEVIRAGELIICPKERKLHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 179 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G F+ V+ + +LRKKL + + + +GY +D Sbjct: 180 KVWG-FEYIGNTRAVDIMVQRLRKKLGTSG--EYIKTIYGVGYKLD 222 >gi|160915463|ref|ZP_02077674.1| hypothetical protein EUBDOL_01471 [Eubacterium dolichum DSM 3991] gi|158432583|gb|EDP10872.1| hypothetical protein EUBDOL_01471 [Eubacterium dolichum DSM 3991] Length = 235 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 42/234 (17%), Positives = 92/234 (39%), Gaps = 17/234 (7%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D +++ + G + + L ++ ++ + Sbjct: 5 ILIVEDEVGIRETISVFMKNQGYHVYVAENGMAGLELLQKEDIHLAIVDIM--MPVMDGI 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + +R + +P+I +S + + G DD V KP E++ARV + RR + Sbjct: 63 TMTMKLRENYDIPVIFLSAKSEDIDKITGLNVGADDYVTKPFEPMELIARVNSNLRRYQQ 122 Query: 122 SNNRAETGPI------------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 + + + ++ ++ + L +E +ILE LM G+ + Sbjct: 123 ILRLKQGKKEEEQGVLLQVGDLMLNQETKEVSIRKKSVHLTSKEFKILELLMGQPGRIFS 182 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 QI+ ++ +EAV + + HI KLRKK+ + + +GY I+ Sbjct: 183 AEQIYENVW--EEEAVNTDTIMVHIRKLRKKIEADPRNPEYIKVVWGIGYKIEK 234 >gi|33860688|ref|NP_892249.1| two-component response regulator [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33633630|emb|CAE18587.1| two-component response regulator [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 251 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 41/229 (17%), Positives = 84/229 (36%), Gaps = 10/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 +LI+D +++ G ++ + L D+ ++ L G + Sbjct: 5 ILLIEDDRDMRELVSGHLEHSGFDVQKAEDGIKGQALALQYSPDLILLDLMLPSVDGLTL 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R S +P++ I+ L+ + F+SG DD + KP E+ R+ A+ RR Sbjct: 65 CQRLRRDERTSNIPILMITALGGLKDKVTGFNSGADDYITKPFDLEELYVRIKALLRRTN 124 Query: 121 VSNNRAETGPIRVFS-------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + + + + L E +L LM G+ V+ I Sbjct: 125 RAQLNSTNQQEILNYGPLTLVPERFEAIWFESAVRLTHLEFELLHCLMQRHGQTVSPALI 184 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 ++G ++ + + H+ LR KL + + GY ++ Sbjct: 185 LKEVWG-YEPDDDIETIRVHVRHLRTKLEPEPRKPKYIKTVYGAGYCLE 232 >gi|311744313|ref|ZP_07718117.1| DNA-binding response regulator [Aeromicrobium marinum DSM 15272] gi|311312486|gb|EFQ82399.1| DNA-binding response regulator [Aeromicrobium marinum DSM 15272] Length = 334 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 44/218 (20%), Positives = 81/218 (37%), Gaps = 9/218 (4%) Query: 4 LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63 +++D + D DG + + R + ++ L G LE+ Sbjct: 114 VVEDEPAIADLVRLYLSRDGYGVHVERDGLRGLDAVRTLRPSLVLLDVGL--PGIDGLEV 171 Query: 64 PRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRLK 120 R +R A P++ ++ + G DD V KP RE+ Sbjct: 172 CRRLRAADDWTPVLFVTARDDEVDRVVGLQLGADDYVTKPFSPRELVARVAAVLRRSTGV 231 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 G +RV R V+ L E +L LM G+ + + Q+ + ++G Sbjct: 232 TGGAVLVVGAVRVDPGSRQVWVEEREVVLTATEFDLLLALMRRPGQVLRREQLLADVWGE 291 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 D + V+ H++++R KL + P+ + R +GY Sbjct: 292 ADYSG-SRTVDVHVAQVRAKLGDAS---PIRTHRGVGY 325 >gi|193212324|ref|YP_001998277.1| two component transcriptional regulator, winged helix family [Chlorobaculum parvum NCIB 8327] gi|193085801|gb|ACF11077.1| two component transcriptional regulator, winged helix family [Chlorobaculum parvum NCIB 8327] Length = 236 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 43/227 (18%), Positives = 90/227 (39%), Gaps = 12/227 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + G S + E ++ ++ L G Sbjct: 6 ILIVEDDRNLAGLLKYNLEKAGYSCLHAATGEEALEQLRQHAVNMVLLDIML--PGIDGF 63 Query: 62 ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA----A 114 E+ R IR S +P++ ++ + F+ G+DD V KP RE+ R+ Sbjct: 64 EVCRRIRQDVQWSDLPIVMLTAKGEEIDKVFGFELGIDDYVVKPFSPRELNLRIRAILKR 123 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 R I + ++ G+ L E ++L L+ RG+ + + Sbjct: 124 DRRNRSNVQEVLRADGIEIDIGKHIAKLDGQPLALTLMEFKLLALLLKRRGQAQTREVLL 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 S ++ + D+++ +++H+++LR+KL + + + R LGY D Sbjct: 184 SDVWDV-DKSINTRTIDTHVTRLREKLGDAG--KLIKTVRGLGYKFD 227 >gi|91203082|emb|CAJ72721.1| strongly similar to response regulator protein phoB [Candidatus Kuenenia stuttgartiensis] Length = 230 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 53/228 (23%), Positives = 102/228 (44%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + DG E L S R + ++ L G L Sbjct: 5 ILIVDDERDIVNLIMYHLEKDGYKTITALDGEAALELSKSERPALIILDIML--PGMNGL 62 Query: 62 ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 E+ + ++ A S +I ++ G DD V KP +E++ARV ++ RR Sbjct: 63 EVCKRLKSDEALSDAAIIMLTARGEEDDITRGLKLGADDYVTKPFSPKELVARVHSVLRR 122 Query: 119 LKVSNNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 K ++ + E G +++ D + ++ +V PL E ++L L G+ + Q+ Sbjct: 123 TKNASFKKELLEIGDLKINMDNYEVKIGHDVIPLTLTEFKLLCQLAGKPGRVFTRDQLID 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI-DW 222 AI G+ ++ ++ HI+ LRKKL++ + + + R +GY +W Sbjct: 183 AIAGVETIIID-RTIDVHIASLRKKLKSF--KNHIITIRGIGYKFMEW 227 >gi|91784528|ref|YP_559734.1| two component transcriptional regulator [Burkholderia xenovorans LB400] gi|170695467|ref|ZP_02886612.1| two component transcriptional regulator, winged helix family [Burkholderia graminis C4D1M] gi|187924829|ref|YP_001896471.1| two component transcriptional regulator, winged helix family [Burkholderia phytofirmans PsJN] gi|296158187|ref|ZP_06841019.1| two component transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] gi|307730483|ref|YP_003907707.1| winged helix family two component transcriptional regulator [Burkholderia sp. CCGE1003] gi|323526816|ref|YP_004228969.1| two component transcriptional regulator PhoB, winged helix family [Burkholderia sp. CCGE1001] gi|91688482|gb|ABE31682.1| two component transcriptional regulator, winged helix family [Burkholderia xenovorans LB400] gi|170139658|gb|EDT07841.1| two component transcriptional regulator, winged helix family [Burkholderia graminis C4D1M] gi|187716023|gb|ACD17247.1| two component transcriptional regulator, winged helix family [Burkholderia phytofirmans PsJN] gi|295891523|gb|EFG71309.1| two component transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] gi|307585018|gb|ADN58416.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1003] gi|323383818|gb|ADX55909.1| two component transcriptional regulator PhoB, winged helix family [Burkholderia sp. CCGE1001] Length = 233 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 47/226 (20%), Positives = 84/226 (37%), Gaps = 8/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++I+D + + G + E + L S D+ ++ L G G Sbjct: 5 ILVIEDEPAISELISVNLQHAGHCPIRAYNAEQAQNLISDVLPDLVLLDWMLPGKSGIAF 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 R +P+I ++ Q + + G DD V KP +E++AR+ A+ RR Sbjct: 65 ARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRRRA 124 Query: 121 VSNNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 E L E R+L + M + + ++TQ+ Sbjct: 125 PQLTEDVVAINGLKLDPATHRVAAHAEGSEIKLDLGPTEFRLLHFFMTHPERVHSRTQLL 184 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G VEE V+ HI +LR L+ +++ R GY + Sbjct: 185 DQVWGDH-VFVEERTVDVHIKRLRAALKPAGCDAMIETVRGSGYRL 229 >gi|323692686|ref|ZP_08106915.1| two-component system response regulator [Clostridium symbiosum WAL-14673] gi|323503240|gb|EGB19073.1| two-component system response regulator [Clostridium symbiosum WAL-14673] Length = 236 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 49/230 (21%), Positives = 85/230 (36%), Gaps = 13/230 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 + DD +++ L +G + ++ + S D+ ++ G+ + Sbjct: 10 ILFADDDPEIREVVRILLEHEGFEVIEASNGKEAVEK-SGGSVDLIILDVM--MPGKSGI 66 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 IR VP++ ++ F +G DD + KP + E++ARV A+ RR V Sbjct: 67 LACLEIRKKLTVPILFLTARTQDSDKALGFCAGGDDYLAKPFSYTELVARVKAMLRRYYV 126 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPL---------PRRERRILEYLMANRGKRVAKTQ 172 RD + + + E RIL L NRGK Sbjct: 127 YQGGGNRKEDDAQIQIRDLLLNKDSREVRLEGGEILLTDLEYRILLLLAENRGKIFTIQN 186 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 I+ +++ + N V HI LRKKL + + + GY I+ Sbjct: 187 IYESVWEEPYYYISNNTVMVHIRNLRKKLEKDPKNPKYIVNVWGKGYRIE 236 >gi|319789306|ref|YP_004150939.1| two component transcriptional regulator, winged helix family [Thermovibrio ammonificans HB-1] gi|317113808|gb|ADU96298.1| two component transcriptional regulator, winged helix family [Thermovibrio ammonificans HB-1] Length = 223 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 46/221 (20%), Positives = 91/221 (41%), Gaps = 9/221 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L++D + + + G +E L S + D+ ++ L G L+ Sbjct: 5 LLVEDDDSIGELVTYYLKNKGYDVEWVQDGLEARELLKSRKYDIIVLDLML--PGVNGLD 62 Query: 63 LPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L R +R + P+I ++ T + ++G DD V KP +E+ R Sbjct: 63 LCREVRLRGINKDTPIIVLTAIGDEDTKVHGLEAGADDYVTKPFSIKEL-LARIEAVLRR 121 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + E I + V G+ L + E ++LE+ + + + ++ ++ I+G Sbjct: 122 AGYSEVLEFEGIVEDKRSKSVTVDGKPIHLTKTELQLLEFFLEHPEQLFSREELLEKIWG 181 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + V+ +IS+LRKKL +K + + LGY + Sbjct: 182 VEHNE-TTRTVDVYISRLRKKLGDKG--KFLKTLPRLGYKL 219 >gi|295100813|emb|CBK98358.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Faecalibacterium prausnitzii L2-6] Length = 229 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 54/225 (24%), Positives = 93/225 (41%), Gaps = 10/225 (4%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 M +++D + +++ +G GF S E + ++ ++ L GE Sbjct: 1 MIYIVEDDSAIRELEQYALQSNGYEAVGFESSEPFWQAVHTTPPELVILDVML--PGEDG 58 Query: 61 LELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--I 115 + + +RA ++P+I I+ S T+ D G DD + KP E L+RV A Sbjct: 59 FSILKKLRAAPSLRRLPIIMITAKSSELDTVRGLDCGADDYITKPFGIMEFLSRVRAALR 118 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + N I + + V G L +E +L L+ N V + I Sbjct: 119 RAEPEARPNVYSFREILLDNARHSVTVSGAPVELTYKEYSLLRLLLENTNLVVTRETILQ 178 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G D +VE V+ HI LRKKL + + + R +GY + Sbjct: 179 VVWGT-DISVESRTVDMHIRTLRKKLGDAG--KYICTVRKVGYKL 220 >gi|217964346|ref|YP_002350024.1| ResD family transcriptional regulator [Listeria monocytogenes HCC23] gi|290893866|ref|ZP_06556844.1| DNA-binding response regulator [Listeria monocytogenes FSL J2-071] gi|217333616|gb|ACK39410.1| transcriptional regulatory protein ResD [Listeria monocytogenes HCC23] gi|290556583|gb|EFD90119.1| DNA-binding response regulator [Listeria monocytogenes FSL J2-071] gi|307571088|emb|CAR84267.1| DNA-binding response regulator [Listeria monocytogenes L99] Length = 228 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 43/228 (18%), Positives = 88/228 (38%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D V + F + + + + D++ I+ L + Sbjct: 3 LLMIEDNVSVCEMIEMFFMKEEIDATFVHDGKQGYEAFFKDEYDIAIIDLML--PNMDGM 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R IR S VP+I ++ S + + G DD V KP ++AR+ A+ RR Sbjct: 61 TICRKIREVSDVPIIILTAKESESDQVLGLEMGADDYVTKPFSPLTLMARIKAVTRRKNS 120 Query: 122 SNNRAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 ++ + L +E +L +LM + + ++ Q+ Sbjct: 121 ASPAENNEDILETTYFKISKRTREIFYQGELLDALTPKEFDLLYFLMQHPRQVFSREQLL 180 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 ++G + +E V+ HI +LR+K+ + + + +GY D Sbjct: 181 EQVWG-YQFYGDERTVDVHIKRLRQKIATETKP-FLHTVWGVGYKFDE 226 >gi|300931183|ref|ZP_07146528.1| putative transcriptional activator protein Irlr [Escherichia coli MS 187-1] gi|300460990|gb|EFK24483.1| putative transcriptional activator protein Irlr [Escherichia coli MS 187-1] gi|323948330|gb|EGB44317.1| heavy metal response regulator [Escherichia coli H120] Length = 290 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 50/219 (22%), Positives = 97/219 (44%), Gaps = 3/219 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D ++ + G ++ + +L + ++ L G Sbjct: 40 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIML--PGMDGW 97 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + +R Q P+I ++ S+ + DSG +D + KP E+LARV A R+ Sbjct: 98 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 157 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 N+ E +R+ S + L R+E ++L L + G+ + +T I S I+G+ Sbjct: 158 LNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 216 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + N V+ I +LR K+ + + + R +GYS Sbjct: 217 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 255 >gi|227546759|ref|ZP_03976808.1| response regulator [Bifidobacterium longum subsp. infantis ATCC 55813] gi|227212721|gb|EEI80602.1| response regulator [Bifidobacterium longum subsp. infantis ATCC 55813] Length = 240 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 48/235 (20%), Positives = 92/235 (39%), Gaps = 19/235 (8%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++DD + + + ++G + + D+ ++ L G Sbjct: 4 IFIVDDDQAIGEMLSLVLENEGFQTVTCLDGLRAVEMFPIVKPDLILLDVML--PGLDGT 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R IRA S VP+I ++ + ++G DD V KP E+LAR+ A +R K Sbjct: 62 GVARRIRATSNVPIIMLTAKSDTLDVVAGLEAGADDYVPKPFKVAELLARIHARFRIAKP 121 Query: 122 ---------------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166 + N E G I + G+ L E +L L A G+ Sbjct: 122 AAEDGATGGASGGNANVNHLERGSIVIDRLEHTATKDGKDLNLTPMEFELLFMLAAAAGE 181 Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 +++ + ++G ++ + + +V H+ +LR K+ + V + R +GY Sbjct: 182 AISRPSLLKNVWG-YENSGDTRLVNVHVQRLRAKVEDDPENPQIVQTVRGIGYKF 235 >gi|255284065|ref|ZP_05348620.1| DNA-binding response regulator [Bryantella formatexigens DSM 14469] gi|255265410|gb|EET58615.1| DNA-binding response regulator [Bryantella formatexigens DSM 14469] Length = 235 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 41/231 (17%), Positives = 80/231 (34%), Gaps = 15/231 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D +++G L +G +E + + + ++ G + Sbjct: 6 ILMIEDDPAIREGVRILLEGEGYHVEEAENGRMGLEKLTENT-HLVILDIM--MPGISGI 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----------REILA 110 IR S VP++ ++ + +G DD + KP + R Sbjct: 63 RTCEEIRKVSNVPVLFLTAKEQESDKVIGLTAGGDDYLVKPFSYAELLARVKALLRRRNV 122 Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 A + G IR+ + V+GE L E R+L M K + Sbjct: 123 YDKAAQEEKSNLPEWLKKGDIRICTIQNSVFVRGEEVNLTELEYRLLLLFMEYPQKIFSA 182 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 ++ + + + N V HI +LRKK+ +++ GY + Sbjct: 183 RNLYESAWEEPFDLGSANTVMVHIRRLRKKVEEDAQNPKLIETVWGKGYRL 233 >gi|78065919|ref|YP_368688.1| two component transcriptional regulator [Burkholderia sp. 383] gi|77966664|gb|ABB08044.1| two component transcriptional regulator, winged helix family [Burkholderia sp. 383] Length = 233 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 46/226 (20%), Positives = 84/226 (37%), Gaps = 8/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++++D + + G + E + L S D+ ++ L G G Sbjct: 5 ILVVEDEPAISELISVNLQHAGHCPIRAYNAEQAQNLISDVLPDLVLLDWMLPGKSGIAF 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 R +P+I ++ Q + + G DD V KP +E++AR+ A+ RR Sbjct: 65 ARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRRRA 124 Query: 121 VSNNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 E L E R+L + M + + ++TQ+ Sbjct: 125 PQLTEDVVAINGLRLDPATHRVAAHAEGSEIKLDLGPTEFRLLHFFMTHPERVHSRTQLL 184 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G VEE V+ HI +LR L+ +++ R GY + Sbjct: 185 DQVWGDH-VFVEERTVDVHIKRLRAALKPAGCDAMIETVRGSGYRL 229 >gi|329922845|ref|ZP_08278361.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] gi|328941618|gb|EGG37903.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] Length = 239 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 45/227 (19%), Positives = 83/227 (36%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +++DD + + + ++ +S + D+ ++ L Sbjct: 6 ILVVDDEIGILKLLEITLRKENFTHIDTVSSGKGALQRVKEKSYDMILLDIML--PDLSG 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH------REILARVAA 114 EL IR H+ P+I IS + L G DD + KP + + + R Sbjct: 64 FELCTEIRKHTNAPIIFISARSTDFDKLTGLGIGGDDYITKPFNPLEVIARIKAILRRQR 123 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 I N + G + + V+G+ +E +L + + Q++ Sbjct: 124 IMENALQQNTAYDYGHLSYHPESATLIVKGQPVDCTAKELELLHFFFKHPNHIFTTVQLY 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 ++G D EE V HISKLRKK+ + + + R +GY Sbjct: 184 ELVWGN-DVFGEEKTVTIHISKLRKKIGDDTRKPAIIVNLRGIGYKF 229 >gi|282853701|ref|ZP_06263038.1| response regulator receiver domain protein [Propionibacterium acnes J139] gi|282583154|gb|EFB88534.1| response regulator receiver domain protein [Propionibacterium acnes J139] gi|314923679|gb|EFS87510.1| response regulator receiver domain protein [Propionibacterium acnes HL001PA1] gi|314967118|gb|EFT11217.1| response regulator receiver domain protein [Propionibacterium acnes HL082PA2] gi|314983174|gb|EFT27266.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA3] gi|315092396|gb|EFT64372.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA4] gi|315103851|gb|EFT75827.1| response regulator receiver domain protein [Propionibacterium acnes HL050PA2] gi|327327251|gb|EGE69027.1| DNA-binding response regulator [Propionibacterium acnes HL103PA1] Length = 236 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 37/224 (16%), Positives = 80/224 (35%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A + + + +G S + R + ++ L G + Sbjct: 10 ILVVDDDAALAEMLQLVLIKEGFSTAWVGHGSDVMDVFREHRPALVLLDLML--PGRDGI 67 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH---REILARVAAIYRR 118 + + IR S VP+I ++ + +G DD V KP + Sbjct: 68 RICQDIRRESGVPIIMLTARSDTPDVVQGLGAGADDYVCKPFRSAELIARIRARLRTPVA 127 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + G + + ++ GE L E +L + + ++ + ++ Sbjct: 128 QREEGEVITVGDLTIDPAAHLVQLGGEEISLTPLEYSLLVTMAQYPNRVFSRETLLREVW 187 Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 G + + +V H+ +LR K+ N + + R +GY I+ Sbjct: 188 G-YTNITDTRLVNVHVQRLRSKVERNADHPQMIVTVRGIGYRIN 230 >gi|302560283|ref|ZP_07312625.1| DNA-binding response regulator RegX3 [Streptomyces griseoflavus Tu4000] gi|302477901|gb|EFL40994.1| DNA-binding response regulator RegX3 [Streptomyces griseoflavus Tu4000] Length = 225 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 44/223 (19%), Positives = 85/223 (38%), Gaps = 6/223 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L +D A + + +G +E D+ ++ L G LE Sbjct: 5 LLAEDDASISEPLARALRREGYEVEVREDGPAALEAGMRGGIDLVVLDLGL--PGMDGLE 62 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-HREILARVAAIYRRLK 120 + R +R+ PL+ ++ T+ D+G DD V KP + A + R Sbjct: 63 VARRLRSEGHTVPLLILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAS 122 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 T +R+ + + E L +E +L L+ + G+ V + Q+ ++ Sbjct: 123 EPQQPPATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 182 Query: 181 FDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222 + ++ HIS LRKKL + + + R +G+ + Sbjct: 183 TWWS-STKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEK 224 >gi|169628810|ref|YP_001702459.1| putative two-component system response regulator [Mycobacterium abscessus ATCC 19977] gi|169240777|emb|CAM61805.1| Putative two-component system response regulator [Mycobacterium abscessus] Length = 227 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 96/224 (42%), Gaps = 10/224 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + A +G +++ ++ D+ ++ L G L Sbjct: 7 ILVVDDEPTICASISARLRAEGYAVDTEDNGLDAVRHCRENPPDLMVLDVML--PGLDGL 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 E+ R ++AH+ +P++ ++ + L G DD + KP R ++ARVA R Sbjct: 65 EVCRQVQAHAPIPVLMLTARGTETDMLVGLGVGADDYLPKPFSMRVLVARVAALLRRTHR 124 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + G +R+ R + + L R E +L YL N +++ ++ ++ Sbjct: 125 IAPPSTDVRIGQVRIDVSERRVYHRDDEVHLTRTEFDLLAYLADNPRVAISRDRLLDQVW 184 Query: 179 GLFDEAVE-ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 G V+SHI LR+KL G + + + +GY+++ Sbjct: 185 GWSAGLPSGRRTVDSHIKALRRKL----GQELIRTVHGIGYALE 224 >gi|169794777|ref|YP_001712570.1| OmpR family transcriptional regulator [Acinetobacter baumannii AYE] gi|213157895|ref|YP_002320693.1| two component signal transduction system response regulator [Acinetobacter baumannii AB0057] gi|215482321|ref|YP_002324503.1| Transcriptional regulatory protein baeR [Acinetobacter baumannii AB307-0294] gi|301345681|ref|ZP_07226422.1| Transcriptional regulatory protein baeR [Acinetobacter baumannii AB056] gi|301511858|ref|ZP_07237095.1| Transcriptional regulatory protein baeR [Acinetobacter baumannii AB058] gi|301594996|ref|ZP_07240004.1| Transcriptional regulatory protein baeR [Acinetobacter baumannii AB059] gi|332852228|ref|ZP_08434033.1| response regulator receiver domain protein [Acinetobacter baumannii 6013150] gi|332870450|ref|ZP_08439214.1| response regulator receiver domain protein [Acinetobacter baumannii 6013113] gi|169147704|emb|CAM85567.1| transcriptional regulator protein (OmpR family),response regulator in two-component regulatory system with BaeS, regulates RNA synthesis [Acinetobacter baumannii AYE] gi|213057055|gb|ACJ41957.1| two component signal transduction system response regulator [Acinetobacter baumannii AB0057] gi|213985926|gb|ACJ56225.1| Transcriptional regulatory protein baeR [Acinetobacter baumannii AB307-0294] gi|332729358|gb|EGJ60698.1| response regulator receiver domain protein [Acinetobacter baumannii 6013150] gi|332732187|gb|EGJ63455.1| response regulator receiver domain protein [Acinetobacter baumannii 6013113] Length = 228 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 44/225 (19%), Positives = 92/225 (40%), Gaps = 7/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + G + F+ + + ++ ++ + L Sbjct: 4 IMLVEDEVELAHLVRDYLEAAGFEVSMFHDGQDAYTNFQQRKPNLMILDLMV--PRMDGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R +R S +P+I ++ + + G DD V KP +E++ARV A+ RRL+ Sbjct: 62 TICRKVREQSDLPIIMVTARTEEIDRVLGLNMGADDYVCKPFSPKELVARVQAVLRRLER 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + R+ + Q + L E R+LE + + G+ ++ Q+ I Sbjct: 122 KAEPEQNDSFRIDKAQQRIWYQQKSLSLTPTEFRLLELFLEHVGQVYSRAQLLDHI-NPD 180 Query: 182 DEAVEENVVESHISKLRKKL----RNKLGFDPVDSKRFLGYSIDW 222 V + V++SHI LR+K+ + + + +GY ++ Sbjct: 181 SFDVADRVIDSHIKNLRRKITEVAETGNRHEWIQAVYGVGYRFEY 225 >gi|308051430|ref|YP_003914996.1| two component transcriptional regulator, winged helix family [Ferrimonas balearica DSM 9799] gi|307633620|gb|ADN77922.1| two component transcriptional regulator, winged helix family [Ferrimonas balearica DSM 9799] Length = 225 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 44/222 (19%), Positives = 95/222 (42%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D A + F + G ++ + L +S + ++ L + L Sbjct: 3 ILIIEDDATNRQYLSKGFSEQGYVVDCAEDGQQGLMLATSESYRLIVLDRML--PKLEGL 60 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L +RA P++ +S + + +G DD + KP E+L R + R Sbjct: 61 ALLAALRATGNTTPVVILSALGDVDERIKGLRAGGDDYMVKPFSFAELLIRAQRLMERPS 120 Query: 121 VSNNRAETG--PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + ++ + + V L +E ++L +L+ ++G+ + +T +F +++ Sbjct: 121 NDSRPSQLSLANLHLDLLAHKARVDDHTMTLQPKEFQLLRFLLEHQGQLLTRTLLFESVW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + NV++ HI++LRKKL+ +++ R GY I Sbjct: 181 D-YHFDPGTNVIDVHIARLRKKLQEAGARVHIETVRGAGYRI 221 >gi|302534835|ref|ZP_07287177.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. C] gi|302443730|gb|EFL15546.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. C] Length = 225 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 44/223 (19%), Positives = 87/223 (39%), Gaps = 6/223 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L +D A + + +G +E D+ ++ L G LE Sbjct: 5 LLAEDDASISEPLARALRREGYEVEVREDGPTALDAGLQGGVDLVVLDLGL--PGMDGLE 62 Query: 63 LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-HREILARVAAIYRRLK 120 + R +RA P++ ++ T+ D+G DD V KP + A + R Sbjct: 63 VARRLRAEGHGFPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAT 122 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 ++ T +R+ + + E L +E +L L+ + G+ V + Q+ ++ Sbjct: 123 EASQAPATHGVRIDVESHRAWMGEEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 182 Query: 181 FDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222 + ++ HIS LRKKL + + + R +G+ + Sbjct: 183 TWWS-STKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEK 224 >gi|225405674|ref|ZP_03760863.1| hypothetical protein CLOSTASPAR_04895 [Clostridium asparagiforme DSM 15981] gi|225042775|gb|EEG53021.1| hypothetical protein CLOSTASPAR_04895 [Clostridium asparagiforme DSM 15981] Length = 238 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 43/233 (18%), Positives = 82/233 (35%), Gaps = 16/233 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D +++G G + L ++ ++ + Sbjct: 8 ILLVEDDKEIREGVEIFLRSQGYQVFQAADGLEGLKLLEQEEVQLAIVDVM--MPRMDGI 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + +R P+I +S + + G DD + KP E+LARV + RR + Sbjct: 66 TMVVKLREMYDFPVIFLSAKSEEVDKILGLNMGADDYITKPFTPMELLARVNSQLRRYRR 125 Query: 122 SNNRAETGPIRV-----------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 R D + V + L E +IL L+ N G+ Sbjct: 126 FMERLNRQQPENSKIHRLGGLEINEDTVEVTVDDKPVKLTPIEYKILLLLVQNPGRVFPA 185 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 +I+ ++ + A+ + V HI +R+K+ N V +GY I+ Sbjct: 186 DEIYERVWN--ERAINTDTVMVHIRNIREKIEVNPKEPKYVKVVWGVGYKIEK 236 >gi|254384902|ref|ZP_05000238.1| two-component system response regulator [Streptomyces sp. Mg1] gi|194343783|gb|EDX24749.1| two-component system response regulator [Streptomyces sp. Mg1] Length = 225 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 44/223 (19%), Positives = 86/223 (38%), Gaps = 6/223 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L +D A + + +G +E D+ ++ L G LE Sbjct: 5 LLAEDDASISEPLARALRREGYEVEVREDGPTALDAGLQGGVDLVVLDLGL--PGMDGLE 62 Query: 63 LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-HREILARVAAIYRRLK 120 + R +RA P++ ++ T+ D+G DD V KP + A + R Sbjct: 63 VARRLRAEGHGFPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAT 122 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + T +R+ + + E L +E +L L+ + G+ V + Q+ ++ Sbjct: 123 EAAQSPATHGVRIDVESHRAWMGEEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 182 Query: 181 FDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222 + ++ HIS LRKKL + + + R +G+ + Sbjct: 183 TWWS-STKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEK 224 >gi|170755180|ref|YP_001780249.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] gi|169120392|gb|ACA44228.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] Length = 230 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 43/229 (18%), Positives = 89/229 (38%), Gaps = 11/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++D ++G ++ + E + ++ ++ L Sbjct: 5 ILVVDDEKEIRDLLEINLINEGYNVFKASCGEEALEILEREEVNLMVLDIM--MPDMDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAA 114 E+ + R +P++ +S ++ +G DD V KP +H E+ R Sbjct: 63 EVCKRAREKYSIPILMLSAKVEDMDRIEGIMTGADDYVCKPFNHLELTVRIRALLRRAYF 122 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + ++++S+N + + + L RE IL L NRG + +IF Sbjct: 123 LNTKMQISDNIIRIESMVIDKKQHKVAINDNEIDLTAREFEILYLLANNRGMVFSAEEIF 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222 ++ N V H+S+LR K+ G + + +GY I+ Sbjct: 183 EKVWKER-YFQSNNTVMVHMSRLRDKIEQHMEGSKVIHTVWGVGYKIEK 230 >gi|196037899|ref|ZP_03105209.1| regulatory protein VanRB [Bacillus cereus NVH0597-99] gi|196031169|gb|EDX69766.1| regulatory protein VanRB [Bacillus cereus NVH0597-99] Length = 220 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 46/221 (20%), Positives = 91/221 (41%), Gaps = 7/221 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + + G ++ + + + ++ L G Sbjct: 5 ILLVEDDEHICNAVKVFLSGAGYKVDACFNGDEAHTKFYDNTYQLVILDILL--PGMNGH 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL R R + P++ ++ + + FD+ DD V KP + +L RV A+ RR Sbjct: 63 ELLREFRKLNNTPVLMMTALSDDENQIRAFDAEADDYVTKPFKIQLLLKRVEALLRRSGA 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 G + + + + E L +E IL L+ N G+ ++ I S ++G + Sbjct: 123 VAKELHYGKLTILPEDFNVFYDDEELLLTLKEFEILMLLVQNNGRTLSHEVILSRVWG-Y 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 D + + V +HI LR KL + + + + R +GY ++ Sbjct: 182 DFDGDGSTVHTHIKNLRAKLPD----NIIKTVRGVGYRLEE 218 >gi|187919104|ref|YP_001888135.1| two component heavy metal response winged helix family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187717542|gb|ACD18765.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia phytofirmans PsJN] Length = 226 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 44/221 (19%), Positives = 90/221 (40%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + G ++ + + + D+ ++ L G+ Sbjct: 3 ILLVEDEPKTGAYLRKGLSEAGYVVDWAQNGVTGQHQAETEDYDLLILDVML--PGQDGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L + +R P++ ++ + + + G DD + KP E++ARV +I RR K Sbjct: 61 TLLQNLRRKRCTPVLFLTARDDVGDRVKGLELGADDYLAKPFDFVELIARVRSILRRGKP 120 Query: 122 SNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 R Q +V L +E +L LM G+ + + I S ++ + Sbjct: 121 REFTLLKVADLELDLTRRKATRQHDVILLTAKEFTLLWLLMRKEGEILPRATIASQVWDM 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + NVV+S I +LR K+ + + + R +GY ++ Sbjct: 181 -NFNSDTNVVDSAIRRLRSKIDDAYEPKLIHTVRGMGYVLE 220 >gi|311103714|ref|YP_003976567.1| transcriptional activator protein IrlR 1 [Achromobacter xylosoxidans A8] gi|310758403|gb|ADP13852.1| transcriptional activator protein IrlR 1 [Achromobacter xylosoxidans A8] Length = 229 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 38/221 (17%), Positives = 89/221 (40%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + D + ++ L D+ ++ L G Sbjct: 3 ILVIEDEPKLADYLKKGLSEQSHVVDLARDGVDGLHLALEGVYDLIVLDVML--PGVDGF 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120 + +R P++ ++ +++ + + G DD + KP E+LARV A + R Sbjct: 61 GVLAAVREQKDTPILMLTARDAVEDRVRGLEGGADDYLVKPFAFSELLARVQALLRRGRS 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + R + G L +E +L L+ +G+ +++T + ++ + Sbjct: 121 QEPTLLRLADLELDLARRRAQRGGRRLDLTAKEFNLLALLLRRQGQVLSRTTLAEQVWDM 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + NV++ + +LR KL + + + R +GY ++ Sbjct: 181 -NFDSDTNVIDVAVRRLRSKLDDPYDTKLLHTVRGMGYVLE 220 >gi|302543545|ref|ZP_07295887.1| DNA-binding response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302461163|gb|EFL24256.1| DNA-binding response regulator [Streptomyces himastatinicus ATCC 53653] Length = 236 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 47/235 (20%), Positives = 94/235 (40%), Gaps = 24/235 (10%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 + ++D ++++ DG + + R D++ ++ + G + Sbjct: 7 LFVEDDDVIREATQLALERDGFLVTAAPDGLTGLERFRADRPDIALLDVMV--PGLDGVS 64 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R IR S VP+I +S + ++G DD V KP ++AR+ A+ RR + Sbjct: 65 LCRRIRDESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRRFGHA 124 Query: 123 NNRAETGPIRV-----------------FSDGRDPEVQGEVFPLPRRERRILEYLMANRG 165 + G + +G + GE L E R+L A G Sbjct: 125 SGPGGRGGEQPGPEEPEGGVLRFGDLEVDPEGMEVRKGGEQVALTPTEMRLLLEFSAAPG 184 Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +++ ++ ++ + + VV+ H+ +LR K+ G D +++ R GY + Sbjct: 185 TVLSRDRLLERVW-EYGWGGDTRVVDVHVQRLRGKI----GQDRIETVRGFGYKL 234 >gi|167577808|ref|ZP_02370682.1| response regulator [Burkholderia thailandensis TXDOH] gi|167615936|ref|ZP_02384571.1| response regulator [Burkholderia thailandensis Bt4] Length = 229 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 45/222 (20%), Positives = 92/222 (41%), Gaps = 8/222 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++I+D A + G ++ + L ++ D ++ L G L Sbjct: 4 LVIEDDAGIAANLYDYLESAGYEVDAAANGPAGLQLAATQPWDAILLDLSL--PGMDGLT 61 Query: 63 LPRIIRA--HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L R +R P++ ++ +L L F G DD + KP +E+ AR+ A+ +R + Sbjct: 62 LCRKLREEIRRDTPVLMLTARDTLDDKLAGFVHGADDYLVKPFSLKEVAARLGALIKRYR 121 Query: 121 VSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 +A +R+ E G +P + +L LM + + ++ + I+ Sbjct: 122 GQVTQAALCRADVRLDLQTLTVERAGRPVKMPPKCLHLLRILMQTPNRVIGHAELEAEIW 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G D + + + +H+ LR+ L + D +++ LGY + Sbjct: 182 G--DALPDSDTLRAHVYTLRRALTAQGEPDLIETVHGLGYRL 221 >gi|119717917|ref|YP_924882.1| response regulator receiver [Nocardioides sp. JS614] gi|119538578|gb|ABL83195.1| response regulator receiver [Nocardioides sp. JS614] Length = 236 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 51/223 (22%), Positives = 99/223 (44%), Gaps = 9/223 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD A + + +G + ++ R D ++ L LE Sbjct: 14 LVVDDEANIAELISMALRYEGWQVRAAHTGSKAVAAAKEFRPDAVVLDIML--PDFDGLE 71 Query: 63 LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR---- 117 + R IR+ VP++ ++ +++ + +G DD V KP E++AR+ + R Sbjct: 72 VLRRIRSTDPSVPVVFLTARDAVEDRVAGLTAGGDDYVTKPFSLEELVARLRGLMRRAGA 131 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + +++ G + + D R+ G L E +L +LM N + ++K QI + Sbjct: 132 QQATASSTLVVGDLELDEDSREVFRAGREVTLTATEFELLRFLMRNPRRVLSKAQILDRV 191 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + +D + NVVE +IS LRKK+ + + + R GY + Sbjct: 192 W-NYDFGGQANVVELYISYLRKKI-DAGHEPMIHTMRGAGYVL 232 >gi|330874632|gb|EGH08781.1| heavy metal response regulator [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 224 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 38/223 (17%), Positives = 86/223 (38%), Gaps = 5/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G ++ + +L DV ++ L Sbjct: 3 ILVVEDEPKTAEYMHQGLTESGYVVDIATTGLDGLYLAQHQAYDVVILDVNL--PEMDGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119 E+ +R ++ ++ L+ + + G DD + KP E+ R Sbjct: 61 EVLSRLRKTVNTRIMMVTARGRLEEKVKGLEMGADDYLVKPFEFPELLARVRTLMRRSEQ 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + G + + + L +E +L LM + G+ +++TQI S ++ Sbjct: 121 TTTAKVLQVGDLELDQGRHRAFRGKQRIDLTTKEFALLHLLMRHSGEVMSRTQIISLVWD 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + + + NVVE I +LR K+ + + + R +GY ++ Sbjct: 181 M-NFDCDTNVVEVSIRRLRAKIDDPFETKLIHTLRGVGYVLEV 222 >gi|320160336|ref|YP_004173560.1| KDP operon transcriptional regulatory protein KdpE [Anaerolinea thermophila UNI-1] gi|319994189|dbj|BAJ62960.1| KDP operon transcriptional regulatory protein KdpE [Anaerolinea thermophila UNI-1] Length = 229 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 45/222 (20%), Positives = 91/222 (40%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ G + + + D+ ++ L + Sbjct: 8 ILVVDDERAIRRYLRTSLTALGYEVLEAATGNEALQSAMTEHPDILILDLGL--PDIDGV 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119 E+ R IR S VP++ +S + D+G DD + KP +E+ RVA +R Sbjct: 66 EVVRRIREWSNVPILILSVRDREDDKVVALDAGADDYLTKPFGIKELLARIRVAIRHRTP 125 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + E +RV R+ VQG L E +++ L+ + G+ + Q+ ++G Sbjct: 126 DQQDTVFEVEDLRVDLGKREVFVQGNRVALTPTEYDLIKVLVQHAGRVLTHNQLLRQVWG 185 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 E +++ +IS LR+K+ + ++ +GY + Sbjct: 186 -PAYENEAHLLRVNISNLRRKIEPNPDQPRYILTEPGVGYRL 226 >gi|170701392|ref|ZP_02892352.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria IOP40-10] gi|170133701|gb|EDT02069.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria IOP40-10] Length = 277 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 49/228 (21%), Positives = 89/228 (39%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A + D D+ + L D ++ L G L Sbjct: 45 ILIVEDDADIADVLSLHLRDERYEVVHSADGTEGLRLLEQGNWDALILDLML--PGVDGL 102 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R RA P+I S S + + G DD + KP E++ARV A+ RR+ Sbjct: 103 EICRRARAMARYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVD 162 Query: 121 VSNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + R+ V G L RE +L + + GK ++ + Sbjct: 163 ALARDSRIDAGTLDVAGLSIDPIAREASVDGTRIDLTPREFDLLYFFARHPGKVFSRMDL 222 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 +A++G + E+ V +HI++LR K+ + + + GY + Sbjct: 223 LNAVWG-YQHEGYEHTVNTHINRLRAKVEADPAEPVRILTVWGRGYKL 269 >gi|169632456|ref|YP_001706192.1| OmpR family transcriptional regulator [Acinetobacter baumannii SDF] gi|169151248|emb|CAO99934.1| transcriptional regulator protein (OmpR family),response regulator in two-component regulatory system with BaeS, regulates RNA synthesis [Acinetobacter baumannii] Length = 228 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 44/225 (19%), Positives = 92/225 (40%), Gaps = 7/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + G + F+ + + ++ ++ + L Sbjct: 4 IMLVEDEVELAHLVCDYLEAAGFEVSMFHDGQDAYTSFQQRKPNLMILDLMV--PRMDGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R +R S +P+I ++ + + G DD V KP +E++ARV A+ RRL+ Sbjct: 62 TICRKVREQSDLPIIMVTARTEEIDRVLGLNMGADDYVCKPFSPKELVARVQAVLRRLER 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + R+ + Q + L E R+LE + + G+ ++ Q+ I Sbjct: 122 KAEPEQNDSFRIDKAQQRIWYQQKSLSLTPTEFRLLELFLEHVGQVYSRAQLLDHI-NPD 180 Query: 182 DEAVEENVVESHISKLRKKL----RNKLGFDPVDSKRFLGYSIDW 222 V + V++SHI LR+K+ + + + +GY ++ Sbjct: 181 SFDVADRVIDSHIKNLRRKITEVAETGNRHEWIQAVYGVGYRFEY 225 >gi|12484568|gb|AAG09631.1| CztR [Pseudomonas fluorescens] Length = 224 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 42/222 (18%), Positives = 88/222 (39%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D D + G ++ ++ L ++ ++ L G+ Sbjct: 3 ILVVEDEQKTADYLQQGLSESGYVVDCASNGIDGLHLAGQHAYELVILDVNL--PGKDGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119 E+ +R + ++ ++ L + D G DD + KP E+LARV Sbjct: 61 EVLEQLRRNGTQRVMMLTARGRLADKIKGLDMGADDYLVKPFEFPELLARVRTLLRRSEH 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + L +E +L+ LM G+ + +TQI S ++ Sbjct: 121 IPQPEVFSVQDLELDPRRHRAYRGSRRIDLTTKEFALLQVLMRQTGEVLTRTQIISLVWD 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + + NVVE IS+LR K+ ++ + + R +GY ++ Sbjct: 181 M-NFDCDTNVVEVSISRLRAKVDDQSEVKLIHTIRGVGYVLE 221 >gi|333024364|ref|ZP_08452428.1| putative two-component system response regulator [Streptomyces sp. Tu6071] gi|332744216|gb|EGJ74657.1| putative two-component system response regulator [Streptomyces sp. Tu6071] Length = 219 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 49/222 (22%), Positives = 97/222 (43%), Gaps = 9/222 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + G +G +++ + + D+ ++ L G Sbjct: 3 LLIVEDERRLARSLALGLGAEGYAVDIAHDGTEGLRRATEGGYDLIVLDIML--PGMNGY 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + +RA P++ ++ + D+G DD + KP + + ARV A+ RR Sbjct: 61 RVCAALRAAGDDTPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLRARVKALLRRRA 120 Query: 121 VSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 G +R+ + R + GE PL +E +LE+L+ G+ V+K I ++ Sbjct: 121 TGAPPVRELGALRLDTGARRVRLAGEEIPLTAKEYAVLEHLVLRAGQVVSKADILEHVWD 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 F + + N+VE ++S LR+KL G + + R GY ++ Sbjct: 181 -FAYSGDPNIVEVYVSTLRRKL----GAGLIRTVRGAGYLLE 217 >gi|325068515|ref|ZP_08127188.1| winged helix family two component transcriptional regulator [Actinomyces oris K20] Length = 219 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 46/222 (20%), Positives = 86/222 (38%), Gaps = 10/222 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + G + L D+ ++ L Sbjct: 4 ILIVEDEPRIVAFLTKGLKAAGFTTHTTAEGRQAVALAVQEDFDLIILDVGL--PDIDGF 61 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118 E+ + +R P+I ++ S+ + + G DD + KP E+ RV Sbjct: 62 EVLQQLRGQGVGAPVIMLTARSSVADRVAGLEGGADDYMPKPFSFEELLARIRVRLRPDA 121 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 R + + R ++G L RE + E M + G+ +++ Q+ S+++ Sbjct: 122 TAPDQMRLTHRDMVLDLRARTLMLEGRTVELSAREFALAETFMRHPGQVLSREQLLSSVW 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 GL D NVVE ++S LR KL G V++ R +GY + Sbjct: 182 GL-DFDPGSNVVEVYVSYLRNKL----GRQRVETVRGMGYRL 218 >gi|258593609|emb|CBE69950.1| putative Two-component transcriptional regulator; putative transcriptional regulator involved in heavy-metal (Cu/Zn) homeostasis [NC10 bacterium 'Dutch sediment'] Length = 225 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 53/221 (23%), Positives = 96/221 (43%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D ++GV ++ NS + E+L S DV ++ L G+ + Sbjct: 3 LLLVEDDQKAARVLKKGLAEEGVVVDIANSGDEGEYLASVNDYDVIVLDWLL--PGKDGI 60 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119 +L R +RA P++ ++ +L+ + D+G DD + KP E+LAR+ A + R Sbjct: 61 QLCRELRARGLSTPILMVTAKDALRDRIKGLDTGADDYMVKPFAFAELLARIRALMRRGT 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + G L +E I+E+L G+ V +T + I+ Sbjct: 121 GPRPTMLRVADLVIDPASHRVTRGGASIKLTTKEYAIIEFLARRVGEVVTRTTLGEHIW- 179 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + N+V+ HIS LRKK+ + + R GY + Sbjct: 180 EDEFDNLTNLVDVHISNLRKKIDAGSTVSLIHTVRGRGYRL 220 >gi|229091866|ref|ZP_04223055.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock3-42] gi|228691446|gb|EEL45205.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock3-42] Length = 215 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 39/220 (17%), Positives = 95/220 (43%), Gaps = 11/220 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++ DD + A F +G + E + + D++ ++ + Sbjct: 4 LIADDEQDMLRILKAYFEKEGFEVFLAKDGEEALQIFYDEKIDLAILDWM--MPKHSGIT 61 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + I+ +S V ++ ++ + L SG D+ V KP H ++ R ++L Sbjct: 62 VCKEIKKNSSVKVLMLTAKSESEDELAALQSGADEYVKKPFHPGVLITRA----KKLIQH 117 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 +N + +++ + + + E +++ + ++G + + ++ ++G FD Sbjct: 118 DNVIQVQDLKIDFTKNKIYKNDKELDITKTELELIKCFLNHKGMILTRKKLLDIVWG-FD 176 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 EE V++H+ +LRKK+ + + + R LGYS++ Sbjct: 177 YFGEERTVDTHVRRLRKKVGE----NIIKTHRGLGYSLEE 212 >gi|229119146|ref|ZP_04248471.1| hypothetical protein bcere0017_53940 [Bacillus cereus Rock1-3] gi|228664299|gb|EEL19815.1| hypothetical protein bcere0017_53940 [Bacillus cereus Rock1-3] Length = 230 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 46/221 (20%), Positives = 89/221 (40%), Gaps = 7/221 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + + G ++ + + + ++ L G Sbjct: 15 ILLVEDDEHICNAVKVFLSGAGYKVDACFNGDEAHTKFYDNTYQLVILDILL--PGMNGH 72 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL R R + P++ ++ + + FD+ DD V KP + +L RV A+ RR Sbjct: 73 ELLREFRKLNNTPVLMMTALSDDENQIRAFDAEADDYVTKPFKIQLLLKRVEALLRRSGA 132 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 G + + + E L +E IL L+ GK ++ I S ++G + Sbjct: 133 VAKELHYGKLTLLPEDFKVFYGDEELLLTLKEFEILMLLVQKNGKTLSHEVILSRVWG-Y 191 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 D + + V +HI LR KL + + + + R +GY ++ Sbjct: 192 DFDGDGSTVHTHIKNLRAKLPD----NIIKTVRGVGYRLEE 228 >gi|90023343|ref|YP_529170.1| two component transcriptional regulator [Saccharophagus degradans 2-40] gi|89952943|gb|ABD82958.1| two component transcriptional regulator, winged helix family [Saccharophagus degradans 2-40] Length = 232 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 46/229 (20%), Positives = 96/229 (41%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D + + + L ++ D+ ++ L L Sbjct: 5 ILLIEDHQDINALIAMNLEVLDYHVTRCSDGAEGLHLGTTQTFDLIILDIML--PSMDGL 62 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ + +RA + P++ ++ S + ++G DD + KP RE+ ARV A RR Sbjct: 63 QVCQHLRAKNIFTPILMLTAKKSESDRVVGLETGADDYLTKPFSVRELQARVKAHLRRTD 122 Query: 121 VSNNRA--------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 +S + G + + R + + L +E +L Y+ ++ G+ ++ + Sbjct: 123 MSQKESTPQADDALHFGELCIDKTKRRLTIGDKEITLTAKEFDLLLYMASHPGQVFSREK 182 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + A++G + + E+ V SHI++LR KL + V + +GY Sbjct: 183 LLDAVWG-YQHSGYEHTVNSHINRLRTKLETDTSNPKYVLTVWGVGYKF 230 >gi|91785081|ref|YP_560287.1| two component transcriptional regulator [Burkholderia xenovorans LB400] gi|91689035|gb|ABE32235.1| two component transcriptional regulator, winged helix family [Burkholderia xenovorans LB400] Length = 220 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 55/221 (24%), Positives = 101/221 (45%), Gaps = 9/221 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D ++ +G +G +++ E +S D+ ++ L L Sbjct: 3 ILLVEDDRMIAEGVRKALRGEGFAVDWVEDGESALSAAASQPYDLVLLDLGL--PRRDGL 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ R +RA P++ ++ ++ + D+G DD + KP E+ AR+ A+ RR Sbjct: 61 DVLRTLRARGHALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQS 120 Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++ + ++G L RE +LE L+A G ++K+Q+ +YG Sbjct: 121 GRSDSTIRLGNLTLDPASHQVTLEGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + E + N VE +I LRKKL G D + + R LGY I Sbjct: 181 -WGEEIGSNTVEVYIHALRKKL----GADLIRNVRGLGYMI 216 >gi|313679062|ref|YP_004056801.1| two component transcriptional regulator, winged helix family [Oceanithermus profundus DSM 14977] gi|313151777|gb|ADR35628.1| two component transcriptional regulator, winged helix family [Oceanithermus profundus DSM 14977] Length = 228 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 48/222 (21%), Positives = 92/222 (41%), Gaps = 10/222 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A + D +G E + + L + R D+ ++ L L Sbjct: 9 ILVVEDEARIADVLERYLRAEGFVTERAATGKRALELWRAFRPDLILLDLML--PEIGGL 66 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 E+ R IRA S VP++ ++ L + G DD + KP RE++ARV Sbjct: 67 EVARTIRAQSDVPILMVTAKAEEVDRLVGLELGADDYITKPFSPREVVARVRAVLRRVGG 126 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + G I V D + E L + R+L L G+ +++ ++ + Sbjct: 127 GARAARIYRVGAIAVDLDAFEARCGDEPVALSPTQLRLLAALAQAEGRALSRHELLDQL- 185 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + V+ V++H+ LR++L +++ R +GY + Sbjct: 186 --GEAYVDTRTVDAHVKNLRRRLGPCGAQ--IETVRGVGYRL 223 >gi|299532922|ref|ZP_07046309.1| two component heavy metal response [Comamonas testosteroni S44] gi|298719146|gb|EFI60116.1| two component heavy metal response [Comamonas testosteroni S44] Length = 229 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 45/225 (20%), Positives = 100/225 (44%), Gaps = 8/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + + G++G ++ ++ L + D+ ++ L G L Sbjct: 3 LLVIEDETKLAEYLQKGLGEEGFVVDAAHNGIDGLHLATEQPYDLIILDGML--PGIDGL 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + +R Q P++ ++ ++ + +G DD + KP E++AR+ A+ RR Sbjct: 61 AVLAALRQSRQTPVLMLTARAQVEDRVKGLQAGADDYLVKPFAFSELVARIHALLRRGLQ 120 Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + E +R+ G+ L +E +L L+ +G+ +++T++ S Sbjct: 121 AQATPEATVLRMADLELDLLRHRATRAGQRLDLTAKEFNLLSLLLRRQGEVLSRTELASQ 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ + + E NVVE + +LR KL + + R +GY ++ Sbjct: 181 VWDM-NFDSETNVVEVAVRRLRLKLDAPFELPLLHTVRGMGYVLE 224 >gi|323487591|ref|ZP_08092881.1| DNA-binding response regulator [Clostridium symbiosum WAL-14163] gi|291547394|emb|CBL20502.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus sp. SR1/5] gi|323399090|gb|EGA91498.1| DNA-binding response regulator [Clostridium symbiosum WAL-14163] Length = 231 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 47/229 (20%), Positives = 86/229 (37%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD + D ++ + F S D++ ++ L Sbjct: 5 ILIIDDEQDIADLLEVYLKNENYVVYKFYCATDAMSCIESGDIDLAILDIML--PDMNGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L ++IR P+I ++ + G DD V KP E++ARV A RR K Sbjct: 63 SLCQLIRKKYTYPIIMLTAKIEETDKITGLTLGADDYVTKPFRPLEVVARVKAQLRRYKK 122 Query: 122 SNNRAE---------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + + + + GE L E IL L+++ G V+ + Sbjct: 123 YSPGIITEKIPSELSYNKLCLNVQTHECLLDGEPVSLTPTEFSILHVLLSSAGNVVSIEE 182 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 +F A++ + + + HI LR+KL + + + +GY I Sbjct: 183 LFHAVWKDEYYSKNSSTITVHIRHLREKLNDTSDTPQYIKTIWGVGYKI 231 >gi|226364525|ref|YP_002782307.1| OmpR family two-component response regulator [Rhodococcus opacus B4] gi|226243014|dbj|BAH53362.1| putative OmpR family two-component response regulator [Rhodococcus opacus B4] Length = 228 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 47/227 (20%), Positives = 92/227 (40%), Gaps = 14/227 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD A +++ A +G + + + +++ DV ++ L G LE Sbjct: 7 LVVDDEATIREAVAARLRAEGFDVVTASDGPAAVTVCAASSPDVLVLDVML--PGFDGLE 64 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-------REILARVAAI 115 + R ++A VP++ ++ L G DD ++KP +L R Sbjct: 65 VCRRVQASRPVPVLMLTARADETDMLIGLGVGADDYLSKPFSMRVLVARVHALLRRADRA 124 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + G + V R + L R E +L Y + +A+ + + Sbjct: 125 HEAVPAERGGLAVGDLEVDLVERRVRRGADEIHLTRTEFDLLAYFASRPRAAIARESLLA 184 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 ++G D A V+SH+ LR+KL G D + + +GY++D Sbjct: 185 EVWGWGDGAG-SRTVDSHVKALRRKL----GGDLIRTVHGVGYALDV 226 >gi|196032134|ref|ZP_03099548.1| transcriptional regulatory protein VanRB [Bacillus cereus W] gi|218904325|ref|YP_002452159.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Bacillus cereus AH820] gi|195994885|gb|EDX58839.1| transcriptional regulatory protein VanRB [Bacillus cereus W] gi|218538575|gb|ACK90973.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Bacillus cereus AH820] Length = 220 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 46/221 (20%), Positives = 90/221 (40%), Gaps = 7/221 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + + G ++ + + + ++ L G Sbjct: 5 ILLVEDDEHICNAVKVFLSGAGYKVDACFNGDEAHTKFYDNTYQLVILDILL--PGMNGH 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL R R + P++ ++ + + FD+ DD V KP + +L RV A+ RR Sbjct: 63 ELLREFRKLNNTPVLMMTALSDDENQIRAFDAEADDYVTKPFKIQLLLKRVEALLRRSGA 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 G + + + E L +E IL L+ N G+ ++ I S ++G + Sbjct: 123 VAKELHYGKLTILPEDFKVFYDDEELLLTLKEFEILMLLVQNNGRTLSHEVILSRVWG-Y 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 D + + V +HI LR KL + + + + R +GY ++ Sbjct: 182 DFDGDGSTVHTHIKNLRAKLPD----NIIKTVRGVGYRLEE 218 >gi|163814202|ref|ZP_02205594.1| hypothetical protein COPEUT_00356 [Coprococcus eutactus ATCC 27759] gi|158450651|gb|EDP27646.1| hypothetical protein COPEUT_00356 [Coprococcus eutactus ATCC 27759] Length = 235 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 43/222 (19%), Positives = 93/222 (41%), Gaps = 6/222 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + ++ +G + E + + ++S + ++ E Sbjct: 17 LMVDDESRMRKLVKDFLTREGYIVLEAGDGEQALDIFMEDK-NISLVILDVMMPKMDGWE 75 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRLK 120 + IR SQVP+I ++ + L F+ GVD+ + KP + + Sbjct: 76 TLKEIRKFSQVPVIMLTAKADERDELQGFNLGVDEYITKPFSPKILVARVAAILRRTSDA 135 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 S R G I + + G+ L +E +L+Y + NRG +++ +I + ++ Sbjct: 136 ASEERLSAGGIDMDLSAHIVTIDGKPVELSFKEFELLQYFIVNRGVALSREKILNNVW-N 194 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D + +++H+ KLR K+ K D + + +GY + Sbjct: 195 YDYYGDARTIDTHVKKLRSKMGAKG--DYIKTIWGVGYRFEV 234 >gi|310641011|ref|YP_003945769.1| two component transcriptional regulator, winged helix family [Paenibacillus polymyxa SC2] gi|309245961|gb|ADO55528.1| Two component transcriptional regulator, winged helix family [Paenibacillus polymyxa SC2] Length = 228 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 41/227 (18%), Positives = 83/227 (36%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD A +++ +G +E E DV ++ Sbjct: 5 ILIADDEASIRNALAYALKREGFLVETAVDGEDALEKVRLFHPDVLILDVM--MPKLGGY 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH------HREILARVAAI 115 E+ R + + V ++ ++ + + + G DD ++KP + L R Sbjct: 63 EVCRRLESRKGVGILLLTAKNDIVDKVLGLELGADDFMSKPFDLRELLARIKALVRRLER 122 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 GP+RV R E+ + L +E +L L+++ G+ + + Sbjct: 123 EGAPAPEGTEVILGPLRVRPSSRTAELGVKALDLTPKEFDVLALLVSHTGRVYTRDDLLE 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 ++G+ D V+ HI +LRKKL + + +GY + Sbjct: 183 QVWGI-DYVGGTRTVDIHIQRLRKKLE--PHQSMLQTVYGIGYKAEK 226 >gi|256833046|ref|YP_003161773.1| two component transcriptional regulator, winged helix family [Jonesia denitrificans DSM 20603] gi|256686577|gb|ACV09470.1| two component transcriptional regulator, winged helix family [Jonesia denitrificans DSM 20603] Length = 227 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 43/219 (19%), Positives = 90/219 (41%), Gaps = 5/219 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + + +G E + + D+ ++ L G+ Sbjct: 6 LVVDDDTALSEMIGIVLKAEGFDAEFCADGDSALQTFHDTQPDLVLLDLML--PGKDGTV 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR S VP+I ++ + ++G DD V+KP +E++AR+ RR++ Sbjct: 64 VCREIRRESGVPIIMLTAKSDTVDVVAGLEAGADDYVSKPFKPKELVARIRTRLRRVEEP 123 Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + G G+V L E +L L + +++ + ++G + Sbjct: 124 EPEILRIGDLDIDVTGHKVTRDGQVISLTPLEFDLLVALARKPWQVLSREVLLEKVWG-Y 182 Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219 A + +V H+ +LR K+ + + V + R +GY Sbjct: 183 RHAADTRLVNVHVQRLRSKIEHDPESPEIVLTVRGVGYK 221 >gi|271964907|ref|YP_003339103.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270508082|gb|ACZ86360.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 224 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 48/220 (21%), Positives = 88/220 (40%), Gaps = 6/220 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + +G +++ + E L DV ++ L Sbjct: 4 LVVEDERRMAAALQRGLQAEGFAVDLAHDGEDGLHLARQGDYDVVVLDIML--PRLSGYN 61 Query: 63 LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + +R + VP++ +S D D G DD + KP + ++AR+ A+ RR Sbjct: 62 VCKQLRAEENWVPILMLSAKDGEYDMADGLDLGADDYLTKPFSYVVLVARLRALLRRGAN 121 Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + R L RE +LEYLM + V+KT+I ++ Sbjct: 122 RRPSVLRAGDLSLDPARRRVSRGETPVELTPREFALLEYLMRRHDEVVSKTEILEHVWDT 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 FD + NVVE ++ LR+K+ + + R GY + Sbjct: 182 FD--TDPNVVEVYVGYLRRKIDVPFSRTALQTVRGAGYRL 219 >gi|251797032|ref|YP_003011763.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247544658|gb|ACT01677.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 216 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 43/221 (19%), Positives = 98/221 (44%), Gaps = 11/221 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L DD ++ + F +G ++ E + + D++ ++ + Sbjct: 3 LLLADDEPMMLQILKSYFIKEGFNVLTAGDGEEALEMFYEHQVDLAVLDWM--MPKVSGV 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + I+ S+ ++ ++ + L ++G DD V KP R ++AR + Sbjct: 61 EVCKEIKKVSRTKVLLLTAKGEPEDELYALNAGADDYVRKPFDPRVLIARACKLLNWASQ 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 +G + V + + G +E ++++YL+ N+G+ V + + ++G F Sbjct: 121 LR----SGDLVVDMEAQKIYRDGSDVQATSKEFQLMKYLIQNKGQIVPRKMLLDQVWG-F 175 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 D ++ V++HI +LR+K+ + + R LGYS++ Sbjct: 176 DYYGDDRTVDTHIRRLREKIGET----RIKTFRGLGYSLEE 212 >gi|58000301|ref|YP_190195.1| DNA-binding transcriptional activator CusR [Escherichia coli] gi|47716815|gb|AAT37590.1| SilR [Escherichia coli] Length = 226 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 38/224 (16%), Positives = 100/224 (44%), Gaps = 6/224 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G ++ ++ L +A D+ ++ L Sbjct: 3 ILIVEDEIKTGEYLSKGLREAGFVVDHADNGLTGYHLAMTAEYDLVILDIML--PDVNGW 60 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118 ++ R++R A +P++ ++ +++ + + G DD + KP E+LARV Sbjct: 61 DIIRMLRTAGKGMPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGN 120 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++ ++ + + + R G L +E +LE+ + ++G+ + ++ I S ++ Sbjct: 121 TMITESQFKVADLSIDLVSRKVSRAGNRIVLTSKEFSLLEFFIRHQGEVLPRSLIASQVW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + + + N ++ + +LR K+ N G + + R +GY ++ Sbjct: 181 DM-NFDSDTNAIDVAVKRLRAKIDNDYGTKLIQTVRGVGYMLEV 223 >gi|28867608|ref|NP_790227.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|213967848|ref|ZP_03395995.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. tomato T1] gi|301382485|ref|ZP_07230903.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. tomato Max13] gi|302062264|ref|ZP_07253805.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. tomato K40] gi|302132919|ref|ZP_07258909.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28850843|gb|AAO53922.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|213927624|gb|EEB61172.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. tomato T1] gi|330961965|gb|EGH62225.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. maculicola str. ES4326] gi|330967264|gb|EGH67524.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. actinidiae str. M302091] gi|331014914|gb|EGH94970.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 224 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 38/223 (17%), Positives = 86/223 (38%), Gaps = 5/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G ++ + +L DV ++ L Sbjct: 3 ILVVEDEPKTAEYMHQGLTESGYVVDIAATGLDGLYLAQHQAYDVVILDVNL--PEMDGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119 E+ +R ++ ++ L+ + + G DD + KP E+ R Sbjct: 61 EVLSRLRKTVNTRIMMVTARGRLEEKVKGLEMGADDYLVKPFEFPELLARVRTLMRRSEQ 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + G + + + L +E +L LM + G+ +++TQI S ++ Sbjct: 121 TTTAKVLQVGDLELDQGRHRAFRGKQRIDLTTKEFALLHLLMRHSGEVMSRTQIISLVWD 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + + + NVVE I +LR K+ + + + R +GY ++ Sbjct: 181 M-NFDCDTNVVEVSIRRLRAKIDDPFETKLIHTLRGVGYVLEV 222 >gi|107022380|ref|YP_620707.1| two component transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|115351235|ref|YP_773074.1| two component transcriptional regulator [Burkholderia ambifaria AMMD] gi|116689327|ref|YP_834950.1| two component transcriptional regulator [Burkholderia cenocepacia HI2424] gi|134295368|ref|YP_001119103.1| two component transcriptional regulator [Burkholderia vietnamiensis G4] gi|170697960|ref|ZP_02889043.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria IOP40-10] gi|170732626|ref|YP_001764573.1| two component transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|171318223|ref|ZP_02907386.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria MEX-5] gi|172060249|ref|YP_001807901.1| two component transcriptional regulator [Burkholderia ambifaria MC40-6] gi|206559652|ref|YP_002230413.1| phosphate regulon two-component regulatory system response regulator protein [Burkholderia cenocepacia J2315] gi|105892569|gb|ABF75734.1| two component transcriptional regulator, winged helix family [Burkholderia cenocepacia AU 1054] gi|115281223|gb|ABI86740.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria AMMD] gi|116647416|gb|ABK08057.1| two component transcriptional regulator, winged helix family [Burkholderia cenocepacia HI2424] gi|134138525|gb|ABO54268.1| two component transcriptional regulator, winged helix family [Burkholderia vietnamiensis G4] gi|169815868|gb|ACA90451.1| two component transcriptional regulator, winged helix family [Burkholderia cenocepacia MC0-3] gi|170137126|gb|EDT05371.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria IOP40-10] gi|171096567|gb|EDT41461.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria MEX-5] gi|171992766|gb|ACB63685.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria MC40-6] gi|198035690|emb|CAR51577.1| phosphate regulon two-component regulatory system, response regulator protein [Burkholderia cenocepacia J2315] Length = 233 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 45/226 (19%), Positives = 84/226 (37%), Gaps = 8/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++++D + + G + E + L S D+ ++ L G G Sbjct: 5 ILVVEDEPAISELISVNLQHAGHCPIRAYNAEQAQNLISDVLPDLVLLDWMLPGKSGIAF 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 R +P+I ++ Q + + G DD V KP +E++AR+ A+ RR Sbjct: 65 ARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRRRA 124 Query: 121 VSNNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + L E R+L + M + + ++TQ+ Sbjct: 125 PQLTEDVVSINGLRLDPATHRVAAHGDGSEIKLDLGPTEFRLLHFFMTHPERVHSRTQLL 184 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G VEE V+ HI +LR L+ +++ R GY + Sbjct: 185 DQVWGDH-VFVEERTVDVHIKRLRAALKPAGCDAMIETVRGSGYRL 229 >gi|304405338|ref|ZP_07386997.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] gi|304345377|gb|EFM11212.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] Length = 234 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 44/226 (19%), Positives = 95/226 (42%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + D A +++ + + D+ ++ L Sbjct: 4 ILVIEDDEKIADMLSAAIAKYDFAVQVVEDFRLVLECFLAVKPDLVLLDVNL--PKFDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 R IRA S P+I IS S + ++G DD + KP ++A++ + RR Sbjct: 62 YWCRQIRAQSTCPIIFISARDSQMDQVMALENGADDYITKPFDIEIVIAKIRSQLRRAYG 121 Query: 122 SNNRAETGPIRV-------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + V + + QG L ++E +LE LM G+ V++ ++ Sbjct: 122 AYAAGQEQERTVTSAGIVLYPERFVVSCQGNSIELTQKEAALLEVLMLKEGRVVSRERLL 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +++N + +I+++R+KL++ D +++ R GY + Sbjct: 182 DLMW-EDQHFIDDNTLNVYITRVRRKLKDIGIGDRIETVRGAGYRL 226 >gi|300859158|ref|YP_003784141.1| two-component system transcriptional regulatory protein [Corynebacterium pseudotuberculosis FRC41] gi|300686612|gb|ADK29534.1| two-component system transcriptional regulatory protein [Corynebacterium pseudotuberculosis FRC41] gi|302206852|gb|ADL11194.1| Two-component system, OmpR family, response regulator PhoP [Corynebacterium pseudotuberculosis C231] gi|302331414|gb|ADL21608.1| Two component system response regulator protein [Corynebacterium pseudotuberculosis 1002] gi|308277104|gb|ADO27003.1| Two component system response regulator protein [Corynebacterium pseudotuberculosis I19] Length = 237 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 48/225 (21%), Positives = 90/225 (40%), Gaps = 10/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + G + NS + + D ++ G Sbjct: 11 ILVVDDEPNIVELLNVSLKFQGFDVATANSGVEALEIAKEFKPDAFILDVM--MPGMDGY 68 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL +RA P++ ++ +++ + G DD V KP E++ R+ I RR Sbjct: 69 ELLPKLRAEGLDGPVLYLTAKDAVEHRIHGLTIGADDYVTKPFSLEEVITRLRVILRRGS 128 Query: 121 VSNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + D + G+V L E +L LM N ++K +I Sbjct: 129 SVEMVEDDSTLVYADLTLNDDTHEVTKAGKVVDLSPTEFNLLRCLMLNAEVVMSKAKILD 188 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +D + NVVES+IS LR+K+ + + + R +GY + Sbjct: 189 HVW-HYDFGGDGNVVESYISYLRRKI-DTHDPQLIQTVRGVGYVL 231 >gi|291549052|emb|CBL25314.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus torques L2-14] Length = 232 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 36/228 (15%), Positives = 83/228 (36%), Gaps = 12/228 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D +++G G + + ++ I+ + Sbjct: 7 LIVEDDKEIREGVQIYLQSQGYKVFQAADGIEGLEVLEKEEIHLAIIDIM--MPRMDGIR 64 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + +R P+I +S + + G DD V KP E++ARV + RR + Sbjct: 65 MTMKLREKYDFPVIMLSAKSEEVDKITGLNIGADDYVTKPFTPMELMARVNSQLRRYRRF 124 Query: 123 NNRAETGPIRV-------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + D + + G L E +IL L N G+ + +I+ Sbjct: 125 LEKLVPQENVHVIGGLEINEDTVEVTMDGNPVKLTPIEYKILLLLAKNPGRVFSSEEIYE 184 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 ++ ++A+ + + H+ +R+K+ + + +GY ++ Sbjct: 185 RVW--QEKAINTDTIMVHVRNIREKIEIDPKKPKYLKVVWGVGYKLEK 230 >gi|253577574|ref|ZP_04854886.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251843043|gb|EES71079.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 229 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 46/224 (20%), Positives = 88/224 (39%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD + +G + + + SA D+ ++ Sbjct: 5 ILVIDDDEKITSMLRRGLAFEGYDVYTAQNGAEGLSMMLSADPDLIILDVM--MPKVDGF 62 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIY 116 E+ R +R S VP++ ++ ++ + D G DD + KP + A + Sbjct: 63 EVCRRLREGGSTVPVLMLTAKDEVENRVKGLDIGADDYLVKPFALEELLARVRALLRRKD 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + R I + D R+ G+ L +E +L M N + + + I Sbjct: 123 SGSRSGSQRLIFEDIIMDLDSREVTRAGQRLELTAKEFELLHLFMQNPKRLLTRDLIMDK 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I+G +D + E NV+E +I+ LR+K G + + R GY + Sbjct: 183 IWG-YDYSGESNVLEVYIAMLRQKTEEHGGKRVIQTIRGAGYIL 225 >gi|88797266|ref|ZP_01112856.1| Transcriptional regulatory protein CpxR [Reinekea sp. MED297] gi|88780135|gb|EAR11320.1| Transcriptional regulatory protein CpxR [Reinekea sp. MED297] Length = 233 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 49/226 (21%), Positives = 88/226 (38%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LIDD + + +G LE +S E D+ ++ G Sbjct: 6 ILLIDDDKDLAELLGEYLDTEGYRLEAAHSGEDGIEQIKHHHYDLVLLDVM--MPGIDGF 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-------ILARVAA 114 E + IR S VP++ ++ + + G DD + KP HRE +L R+ Sbjct: 64 ETLKRIRESSIVPVLMLTAKGEETDRILGLELGADDYLAKPYSHRELLARIKALLRRIEL 123 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + N + + D GE P+ E ++L LM+ GK V K ++ Sbjct: 124 DKNQKEDDNGILACNGVELNFDTYRVYSDGEHIPMTTSEFKVLRVLMSRAGKAVPKEDLY 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + G + + ++ H+S +R+KL + + R +GY Sbjct: 184 LEVLGR-EIMAYDRSIDMHVSNVRRKLGGTTEQSKIQTIRGIGYMF 228 >gi|21909780|ref|NP_664048.1| two-component response regulator [Streptococcus pyogenes MGAS315] gi|50913656|ref|YP_059628.1| response regulator CsrR [Streptococcus pyogenes MGAS10394] gi|56808741|ref|ZP_00366459.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Streptococcus pyogenes M49 591] gi|71902940|ref|YP_279743.1| response regulator [Streptococcus pyogenes MGAS6180] gi|71910096|ref|YP_281646.1| response regulator [Streptococcus pyogenes MGAS5005] gi|94987913|ref|YP_596014.1| response regulator [Streptococcus pyogenes MGAS9429] gi|94989788|ref|YP_597888.1| response regulator CsrR [Streptococcus pyogenes MGAS10270] gi|94993673|ref|YP_601771.1| Response regulator CsrR [Streptococcus pyogenes MGAS10750] gi|139474380|ref|YP_001129096.1| response regulator protein [Streptococcus pyogenes str. Manfredo] gi|3599371|gb|AAC64935.1| CsrR [Streptococcus pyogenes] gi|21903965|gb|AAM78851.1| two-component response regulator [Streptococcus pyogenes MGAS315] gi|50902730|gb|AAT86445.1| Response regulator CsrR [Streptococcus pyogenes MGAS10394] gi|71802035|gb|AAX71388.1| response regulator [Streptococcus pyogenes MGAS6180] gi|71852878|gb|AAZ50901.1| response regulator [Streptococcus pyogenes MGAS5005] gi|84578944|dbj|BAE72910.1| two-component response regulator mutated protein M3-2 [Streptococcus pyogenes] gi|94541421|gb|ABF31470.1| response regulator [Streptococcus pyogenes MGAS9429] gi|94543296|gb|ABF33344.1| Response regulator CsrR [Streptococcus pyogenes MGAS10270] gi|94547181|gb|ABF37227.1| Response regulator CsrR [Streptococcus pyogenes MGAS10750] gi|134272627|emb|CAM30894.1| response regulator protein [Streptococcus pyogenes str. Manfredo] gi|190350983|gb|ACE75888.1| CovR [Streptococcus pyogenes] gi|190350986|gb|ACE75890.1| CovR [Streptococcus pyogenes] gi|190350989|gb|ACE75892.1| CovR [Streptococcus pyogenes] gi|190350992|gb|ACE75894.1| CovR [Streptococcus pyogenes] gi|190350995|gb|ACE75896.1| CovR [Streptococcus pyogenes] gi|190350998|gb|ACE75898.1| CovR [Streptococcus pyogenes] gi|190351001|gb|ACE75900.1| CovR [Streptococcus pyogenes] gi|190351004|gb|ACE75902.1| CovR [Streptococcus pyogenes] gi|190351007|gb|ACE75904.1| CovR [Streptococcus pyogenes] gi|190351010|gb|ACE75906.1| CovR [Streptococcus pyogenes] gi|190351013|gb|ACE75908.1| CovR [Streptococcus pyogenes] gi|190351016|gb|ACE75910.1| CovR [Streptococcus pyogenes] gi|190351019|gb|ACE75912.1| CovR [Streptococcus pyogenes] gi|190351022|gb|ACE75914.1| CovR [Streptococcus pyogenes] gi|190351025|gb|ACE75916.1| CovR [Streptococcus pyogenes] gi|190351028|gb|ACE75918.1| CovR [Streptococcus pyogenes] gi|190351031|gb|ACE75920.1| CovR [Streptococcus pyogenes] gi|190351034|gb|ACE75922.1| CovR [Streptococcus pyogenes] gi|190351037|gb|ACE75924.1| CovR [Streptococcus pyogenes] gi|190351040|gb|ACE75926.1| CovR [Streptococcus pyogenes] gi|190351043|gb|ACE75928.1| CovR [Streptococcus pyogenes] gi|190351046|gb|ACE75930.1| CovR [Streptococcus pyogenes] gi|190351049|gb|ACE75932.1| CovR [Streptococcus pyogenes] gi|190351052|gb|ACE75934.1| CovR [Streptococcus pyogenes] gi|190351055|gb|ACE75936.1| CovR [Streptococcus pyogenes] gi|190351058|gb|ACE75938.1| CovR [Streptococcus pyogenes] gi|190351061|gb|ACE75940.1| CovR [Streptococcus pyogenes] gi|254826682|dbj|BAH86623.1| response regulator [Streptococcus pyogenes] gi|254826685|dbj|BAH86625.1| response regulator [Streptococcus pyogenes] gi|254826688|dbj|BAH86627.1| response regulator [Streptococcus pyogenes] gi|254826691|dbj|BAH86629.1| response regulator [Streptococcus pyogenes] Length = 228 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 90/224 (40%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + +G + + D+ ++ L Sbjct: 5 ILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLML--PEMDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R ++ ++ ++ S+ + D G DD + KP E+LAR+ AI+RR + Sbjct: 63 EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122 Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + R + L +RE +L LM N + + + ++ S Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +DEAVE NVV+ +I LR K+ + + R +GY I Sbjct: 183 VW-KYDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225 >gi|260589379|ref|ZP_05855292.1| subtilin biosynthesis regulatory protein SpaR [Blautia hansenii DSM 20583] gi|331082774|ref|ZP_08331897.1| hypothetical protein HMPREF0992_00821 [Lachnospiraceae bacterium 6_1_63FAA] gi|260540460|gb|EEX21029.1| subtilin biosynthesis regulatory protein SpaR [Blautia hansenii DSM 20583] gi|330400393|gb|EGG80035.1| hypothetical protein HMPREF0992_00821 [Lachnospiraceae bacterium 6_1_63FAA] Length = 224 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 42/221 (19%), Positives = 90/221 (40%), Gaps = 7/221 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L+DD + F + + + +A D+ ++ L Sbjct: 5 ILLVDDDTELVKMLSKYFERKKYRVITAQNGKEAIEKLQTA-PDIILLDIN--MPQMDGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI---YRR 118 E+ R IR P++ ++ + ++ SG DD + KP +E+ AR+ A +R Sbjct: 62 EVCRKIRDKISCPILFLTARVEEEDRVNGLLSGGDDYILKPFSLKELDARITAHLKREQR 121 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + G + + ++ ++ E+ + E I+E L + G+ K +I+ Sbjct: 122 HSQNTEFRFHGELCIDYGQKNVQINEEIIEFTKLEYEIIELLSTHPGQVFDKERIYEITC 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 G +D + V+ I ++RKK+ N + +++ +GY Sbjct: 182 G-YDAEGDSRVITELIRRIRKKIGNYSDTEYIETVWGMGYK 221 >gi|182418651|ref|ZP_02949928.1| regulatory protein VanR [Clostridium butyricum 5521] gi|237668000|ref|ZP_04527984.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377513|gb|EDT75067.1| regulatory protein VanR [Clostridium butyricum 5521] gi|237656348|gb|EEP53904.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E BL5262] Length = 229 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 41/229 (17%), Positives = 90/229 (39%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD +++ L +G ++ + E + D+ ++ + K Sbjct: 4 ILIADDNDEIREIVRILLESEGFNVSEAINGEDAVNKVNDNT-DLIILDIMMPIK--SGF 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + IR + P++ ++ F +G DD ++KP + E+++RV A+ RR + Sbjct: 61 KACIEIREKTSAPILFLTAKSQDSDKCMAFSAGSDDFLSKPFSYTELISRVKALLRRYYI 120 Query: 122 SN--------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + +++ + + E L E R+L + +NR K + + Sbjct: 121 YKGKEAPESSDSIDINGLKINKTSNEVSIDNEEIILTEIEYRLLLLMASNRSKIFSAQNL 180 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 + +++ N V HI LR KL + + + GY I+ Sbjct: 181 YESVWNEPYFYTNNNTVMVHIRNLRSKLECDPQNPKYIKTVWGKGYRIE 229 >gi|114798462|ref|YP_760726.1| phosphate regulon transcriptional regulatory protein PhoB [Hyphomonas neptunium ATCC 15444] gi|114738636|gb|ABI76761.1| phosphate regulon transcriptional regulatory protein PhoB [Hyphomonas neptunium ATCC 15444] Length = 228 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 54/223 (24%), Positives = 99/223 (44%), Gaps = 8/223 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++ +D + V + + + + E + D+ ++ L +E Sbjct: 6 LVAEDESAVSELLLYNLKREDYDVAIAADGEEALMMIDERIPDLLLLDWML--PKVSGIE 63 Query: 63 LPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 + R +RA + +P+I ++ + D+G DD V KP E++ARV A+ RR+ Sbjct: 64 ICRRVRATGVNPNLPIIMLTARGEESDRIRGLDTGADDYVTKPFSTTELMARVRAVLRRI 123 Query: 120 KV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + +R G I + E L E R+L+Y M + G+ ++ Q+ + Sbjct: 124 RPGLKEDRITVGDIEIDRVAHRVSRNNEDIHLGPTEFRLLDYFMQHPGRVFSREQLLDTV 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G D VE V+ H+ +LRK LR G DP+ + R GY++ Sbjct: 184 WG-SDVYVEARTVDVHVGRLRKALRQSGGEDPIRTVRSAGYAL 225 >gi|318056730|ref|ZP_07975453.1| two-component system response regulator [Streptomyces sp. SA3_actG] gi|318075364|ref|ZP_07982696.1| two-component system response regulator [Streptomyces sp. SA3_actF] Length = 225 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 45/223 (20%), Positives = 87/223 (39%), Gaps = 6/223 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L +D A + + +G +E D+ ++ L G LE Sbjct: 5 LLAEDDASISEPLARALRREGYEVEVREDGPAALEAGMQGAIDLVVLDLGL--PGMDGLE 62 Query: 63 LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-HREILARVAAIYRRLK 120 + R +RA VP++ ++ T+ D+G DD V KP + A + R Sbjct: 63 VARRLRAEGLPVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAG 122 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + T +R+ + + E L +E +L L+ + G+ V + Q+ ++ Sbjct: 123 EAKEAPATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 182 Query: 181 FDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222 + ++ HIS LRKKL + + + R +G+ + Sbjct: 183 TWWS-STKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEK 224 >gi|315092676|gb|EFT64652.1| response regulator receiver domain protein [Propionibacterium acnes HL060PA1] Length = 236 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 37/224 (16%), Positives = 80/224 (35%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A + + + +G S + R + ++ L G + Sbjct: 10 ILVVDDDAALAEMLQLVLIKEGFSTAWVGHGSDVMDVFREHRPALVLLDLML--PGRDGI 67 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH---REILARVAAIYRR 118 + + IR S VP+I ++ + +G DD V KP + Sbjct: 68 RICQDIRRESGVPIIMLTARSDTPDVVQRLGAGADDYVCKPFRSAELIARIRARLRTPVA 127 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + G + + ++ GE L E +L + + ++ + ++ Sbjct: 128 QREEGEVITVGDLTIDPAAHLVQLGGEEISLTPLEYSLLVTMAQYPNRVFSRETLLREVW 187 Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 G + + +V H+ +LR K+ N + + R +GY I+ Sbjct: 188 G-YTNITDTRLVNVHVQRLRSKVERNADHPQMIVTVRGIGYRIN 230 >gi|325847791|ref|ZP_08170013.1| putative alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480809|gb|EGC83862.1| putative alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 237 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 44/232 (18%), Positives = 89/232 (38%), Gaps = 13/232 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D + + + + + + S D+ ++ + Sbjct: 6 ILLIEDEKGISKIMKSYLEKEDYEVFQAFDGKEGLEIFESEDIDLVLLDLMI--PKISGE 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 +L + IR S VP+I ++ S ++ G DD V KP +E++ R+ + RR++ Sbjct: 64 DLIKEIRNKSNVPVIMVTAKVSEDDIVNGLKLGADDYVTKPFSPKELMQRIKTVLRRIEK 123 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFP------LPRRERRILEYLMANRGKRVAKTQIFS 175 N F L + E +I++ L +N K + +I Sbjct: 124 YNIPRADIIKTTDGRLEMDLEYNRFFKDGEEIFLTKNEFQIIKTLFSNPNKIFTREEIIE 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYS---IDWN 223 +G FD + +++HI +R+K+ + + + +GY ID N Sbjct: 184 ITFG-FDYDAYDRAIDTHIKNIRQKIEDNPKKPSYIKTIYGMGYKSGGIDDN 234 >gi|291085390|ref|ZP_06352946.2| DNA-binding response regulator YycF [Citrobacter youngae ATCC 29220] gi|291070837|gb|EFE08946.1| DNA-binding response regulator YycF [Citrobacter youngae ATCC 29220] Length = 243 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 48/228 (21%), Positives = 89/228 (39%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 L++D + D+G + D ++ L G L Sbjct: 10 IFLVEDDNDIASLLQLSLKDEGYEIIHEADGTRALEQLEKHVWDAVILDLML--PGVDGL 67 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R IR S P+I IS S + + G DD + KP E++ARV A++RR + Sbjct: 68 EICRRIRQMSFYLPVIIISARTSETHRVLGLEMGADDYLAKPFSVLELMARVKALFRRQE 127 Query: 121 VSNNRAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + + R+ G+ L RE +L + + G+ ++ + Sbjct: 128 AMSQNLRMEAGIVSVHGVEIDPLAREVRQHGKSIDLTPREFDLLYFFARHPGEVFSRQAL 187 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++G + E+ V SHI++LR K+ + + + + GY + Sbjct: 188 LDQVWG-YQHEGYEHTVNSHINRLRTKIEKDAAEPEIILTVWGRGYKL 234 >gi|284051845|ref|ZP_06382055.1| two component transcriptional regulator [Arthrospira platensis str. Paraca] gi|291567764|dbj|BAI90036.1| two-component response regulator [Arthrospira platensis NIES-39] Length = 253 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 40/226 (17%), Positives = 87/226 (38%), Gaps = 11/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD + ++ G S+ + D+ ++ Sbjct: 16 ILIADDESAIRRILTTRLSMVGYSVVAAADGLQAIEMFDRESPDLVVLDVM--MPRLNGY 73 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARVAA 114 + + IR S +P+I ++ + + + G DD + KP IL R Sbjct: 74 GVCQKIREISDIPIIMLTALGDVADRITGLELGADDYLTKPFSPKELEARIHAILRRFKD 133 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 +S + +R+ + R ++ PL E +LE L G+ V++++I Sbjct: 134 NASSHDLSPEVIQVDTLRIDTIKRRVYKGDKLLPLTYIEFNLLELLFKRSGEAVSRSEIL 193 Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218 ++G + VV+ H+++LR K+ ++ + + + R +GY Sbjct: 194 QQLWGYTPRRIADMRVVDVHVARLRAKIETDQRNPEYILTVRGIGY 239 >gi|261492521|ref|ZP_05989074.1| phosphate regulon response regulator PhoB [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261496796|ref|ZP_05993170.1| phosphate regulon response regulator PhoB [Mannheimia haemolytica serotype A2 str. OVINE] gi|261307543|gb|EEY08872.1| phosphate regulon response regulator PhoB [Mannheimia haemolytica serotype A2 str. OVINE] gi|261311680|gb|EEY12830.1| phosphate regulon response regulator PhoB [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 228 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 36/221 (16%), Positives = 86/221 (38%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++++D +++ + + + ++ ++ + G G + Sbjct: 5 ILIVEDERAIREMLSLYLSKQ-YQVIEAEDYQSAINKLG-EKPELILLDWMMPGRSGIHL 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI-LARVAAIYRRL 119 ++ + ++P+I ++ S + + ++G DD + KP + + A R Sbjct: 63 IKYLKKQPETEKIPIIMLTARSSEEDCITGLNAGADDYITKPFSPQVLLARIEAVWRRSY 122 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +N + + + V + L E ++L +L+ + K + Q+ I+G Sbjct: 123 DPPSNLINIDGLILDQQAQRVLVAEQEVKLSGTEYKLLHFLITHPEKVYRREQLLDFIWG 182 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D VE+ V+S+I +LRK L + + R GY Sbjct: 183 N-DIYVEDRTVDSYIRRLRKSLEPYGFERYIQTVRGSGYRF 222 >gi|168186973|ref|ZP_02621608.1| transcriptional regulatory protein ResD [Clostridium botulinum C str. Eklund] gi|169295067|gb|EDS77200.1| transcriptional regulatory protein ResD [Clostridium botulinum C str. Eklund] Length = 227 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 44/224 (19%), Positives = 92/224 (41%), Gaps = 9/224 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + D ++ DG ++G + D+ ++ L E + Sbjct: 6 LVVEDEISINDILVSALRSDGYIVKGVFLASEAKEALGLFNPDLVLLDINL--PDENGFD 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAIY 116 L R I +P+I ++ + + + G DD + KP H +E+ R Y Sbjct: 64 LCRYINKKCIIPIIMLTARNDIVDKVLGLELGADDYITKPFHIKEVLTRVKVAMRRVNKY 123 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + +++ +GR + L +E +LE+ + NR K + ++ Sbjct: 124 KDSSEESFIDINNSVKINLEGRIVLKNNKEVKLKPKEYELLEFFVKNRNKVFCREELLDK 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ FD E V+ H+ +LR KL +K +D+ +GY + Sbjct: 184 VW-EFDYDGEIRTVDVHVRRLRSKLNDKHEASIIDTVFGVGYVM 226 >gi|167760669|ref|ZP_02432796.1| hypothetical protein CLOSCI_03054 [Clostridium scindens ATCC 35704] gi|167661556|gb|EDS05686.1| hypothetical protein CLOSCI_03054 [Clostridium scindens ATCC 35704] Length = 235 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 40/231 (17%), Positives = 82/231 (35%), Gaps = 13/231 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D ++ +++ F S S D++ ++ L L Sbjct: 5 ILVVDDEKEIADLIEVYLQNENLNVYKFYSGTEALAHMESVDFDLAILDIML--PDISGL 62 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH---------REILAR 111 + +I+R P+I ++ + G DD + KP + + Sbjct: 63 SICQIMREKGCACPIIMLTAKDEETDKITGLMLGADDYITKPFRPLELVARVKAQLRRYK 122 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + E + + + + GE L E IL L+ +G V+ Sbjct: 123 KYNTVSAAPATETILEYAGLTMNIKTYECLLNGESLSLTPTEFAILRVLLERKGSVVSAE 182 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221 +F I+ N + HI LR+K+++ G + + +GY I+ Sbjct: 183 DLFHEIWQDEYYNKSNNTITVHIRHLREKMKDTGGNPKYIKTIWGVGYKIE 233 >gi|120402833|ref|YP_952662.1| two component transcriptional regulator [Mycobacterium vanbaalenii PYR-1] gi|119955651|gb|ABM12656.1| two component transcriptional regulator, winged helix family [Mycobacterium vanbaalenii PYR-1] Length = 251 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 52/230 (22%), Positives = 95/230 (41%), Gaps = 15/230 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + + + + DV ++ L G LE Sbjct: 18 LVVDDEVPLAEVIAGYLEREQFETIVAANGLDAISVARELDPDVVILDLGL--PGIDGLE 75 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR S ++ ++ + T+ G DD V KP RE++AR+ A+ RR +V Sbjct: 76 VCRQIRTFSDAYVVMLTARDTEIDTVLGLTVGADDYVTKPFSPRELVARIRAMLRRPRVL 135 Query: 123 N-----------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + + GP+ + R+ + GE L R E ILE L + G +++ Sbjct: 136 HTAGAAAERNVTPPRQFGPLSIDVAAREVRIDGEPILLTRTEFDILEALSGHPGIVLSRR 195 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 Q+ + E++V+ HI LR+KL + + + R +GY + Sbjct: 196 QLIEIVRDGP-WVGNEHLVDVHIGHLRRKLGDDAAQPRYIRTVRGVGYRM 244 >gi|163943206|ref|YP_001642436.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163865403|gb|ABY46461.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] Length = 221 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 47/223 (21%), Positives = 93/223 (41%), Gaps = 9/223 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D +++ ++E + + D+ ++ Sbjct: 6 ILVIEDDQEIQELIKQFLLTQQYTVEVASDGLEGMIQFNKQSFDLILLDVM--MPNLNGF 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119 E+ ++IR+ S VP+I ++ Q + FD G+DD + KP ++ RV A Sbjct: 64 EVAKMIRSQSNVPVIMLTALEEEQDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSND 123 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 K +N +RV D V L +E IL+ L+ N + + + I ++G Sbjct: 124 KSLDNHFVFKELRVDVDAYKVYVNEVEISLTTKEFEILQLLLQNEKRVLPRESIVEKVWG 183 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D E ++++H+ +RKKL + + + +GY ID Sbjct: 184 -YDYIGESRIIDTHMKNIRKKLDIP----YIKTIKGIGYKIDE 221 >gi|325263675|ref|ZP_08130409.1| phosphate regulon response regulator PhoB [Clostridium sp. D5] gi|324031384|gb|EGB92665.1| phosphate regulon response regulator PhoB [Clostridium sp. D5] Length = 226 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 52/223 (23%), Positives = 100/223 (44%), Gaps = 6/223 (2%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEK 59 M ++D +++ I G+ +GF + ++ ++ L G G Sbjct: 1 MIYCVEDDDNIRELVIYTLETTGLKAQGFAEGGSFMEALAFDTPELILLDIMLPGEDGLS 60 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +L + +P+I ++ + + DSG DD V KP E+++RV A+ RR Sbjct: 61 LLGKLKSSSKTKDIPVIMVTAKGAEYDKVVGLDSGADDYVTKPFGMMELVSRVKAVLRRT 120 Query: 120 KVSNNRAETGP--IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 ++++ + + V + V G+ L +E +LE LM N+ + + Q+ I Sbjct: 121 GRASDKDDMSVGGVCVNVKKHEVTVDGKTVTLTLKEFELLERLMRNQNIVLTRDQLLEDI 180 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G +D E V+ H+ LR+KL K + +++ R +GY I Sbjct: 181 WG-YDFDGETRTVDVHVRTLRQKLGVKG--EIIETVRGVGYRI 220 >gi|254775852|ref|ZP_05217368.1| TcrA [Mycobacterium avium subsp. avium ATCC 25291] Length = 222 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 47/220 (21%), Positives = 91/220 (41%), Gaps = 5/220 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L++D + +G + + + DV ++ L G E Sbjct: 4 LLVEDEPRLAATVARGLKAEGFVVVTVGNGVDGLAEATENPFDVVILDIML--PGRSGYE 61 Query: 63 LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120 + R +R+++ P++ ++ D FD G DD + KP R ++AR+ A + R Sbjct: 62 VLRRMRSNNVWTPVLMLTAKDGEYDETDAFDLGADDYLTKPFSFRVLVARLRALVRRGAP 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 G + + + L RE +LE+LM N+ V K I + ++ Sbjct: 122 ERPVVLTAGSLSLDPARHTVQRGSTPIALTPREYGVLEFLMRNKDVVVTKADILANVWDA 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + NVVE ++ LR+K+ G + +++ R +GY + Sbjct: 182 HHHGPD-NVVEVYVGYLRRKIDVPFGTNTIETIRGVGYRL 220 >gi|226310694|ref|YP_002770588.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226093642|dbj|BAH42084.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 230 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 48/222 (21%), Positives = 93/222 (41%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L+DD + ++G + + + V ++ G Sbjct: 12 ILLVDDEPTILQFLEMGLENEGFQVLTAQDGMNAVTMVKEHQPHVVILDVM--MPGMDGF 69 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-AIYRRLK 120 E+ R+++ V I ++ ++ + G DD + KP E+LAR+ I Sbjct: 70 EVCRMLKKIQNVATIMLTAREDVEDRVKGLTLGADDYMIKPFSFEELLARIHARIRNHYP 129 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 ++ GP ++ ++ G + L E +L+YL+ N G ++K I ++G Sbjct: 130 HLLSKVHLGPFQIDDRRKEITYDGTLLELSPTEYSLLKYLVTNHGLVLSKPMILDNVWG- 188 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D EEN+VE +I LR KL ++ + + R GY +D+ Sbjct: 189 YDFGGEENIVEVYIRSLRDKLNDR-QHRIIRTLRGAGYRVDF 229 >gi|326943053|gb|AEA18949.1| two-component response regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 223 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 42/226 (18%), Positives = 85/226 (37%), Gaps = 12/226 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +++ +G + + DV ++ L Sbjct: 3 ILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALERWNEG-PDVLILDVML--PDTDGY 59 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAI 115 EL R+ R +P++ ++ + L G DD V KP ++ R Sbjct: 60 ELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRVK 119 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 VS+ E G I + R V G+ L RE + + ++N + + ++ Sbjct: 120 KTENAVSHEVIEAGEIVICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 179 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G F+ V+ + +LRKKL + + + +GY +D Sbjct: 180 KVWG-FEYIGNTRAVDIMVQRLRKKLGTSG--EYIKTIYGVGYKLD 222 >gi|209526757|ref|ZP_03275279.1| two component transcriptional regulator, winged helix family [Arthrospira maxima CS-328] gi|209492801|gb|EDZ93134.1| two component transcriptional regulator, winged helix family [Arthrospira maxima CS-328] Length = 253 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 41/226 (18%), Positives = 88/226 (38%), Gaps = 11/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD + ++ G S+ + D+ ++ Sbjct: 16 ILIADDESAIRRILTTRLSMVGYSVVAAADGLQAIEMFDRESPDLVVLDVM--MPRLNGY 73 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARVAA 114 + + IRA S +P+I ++ + + + G DD + KP IL R Sbjct: 74 GVCQKIRAISDIPIIMLTALGDVADRITGLELGADDYLTKPFSPKELEARIHAILRRFKD 133 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 +S + +R+ + R ++ PL E +LE L G+ V++++I Sbjct: 134 NASSHDLSPEVIQVDTLRIDTIKRRVYKGDKLLPLTYIEFNLLELLFKRSGEAVSRSEIL 193 Query: 175 SAIYG-LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218 ++G + VV+ H+++LR K+ ++ + + + R +GY Sbjct: 194 QQLWGYTPRRIADMRVVDVHVARLRAKIETDQRNPEYILTVRGIGY 239 >gi|196228357|ref|ZP_03127224.1| two component transcriptional regulator, winged helix family [Chthoniobacter flavus Ellin428] gi|196227760|gb|EDY22263.1| two component transcriptional regulator, winged helix family [Chthoniobacter flavus Ellin428] Length = 226 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 92/224 (41%), Gaps = 5/224 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D V + +++ + + S D+ ++ L Sbjct: 3 ILLVEDEEKVARFITVGLKAERFAVDTARDGKTGLQMASLNPYDLLIVDLML--PEINGT 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL R +R + P++ ++ +L + F+SG DD + KP E+L R+ A+ RR Sbjct: 61 ELIRRVRKQNTDVPIVVLTARDALSDKVANFESGADDYLTKPFAFAELLVRIKALLRRGA 120 Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 V + G+ L +E +LEYL N G+ +++T I ++ Sbjct: 121 VPRANVIQIADLEIDRLAHQVRRGGQSIKLTAKEYGLLEYLATNAGRVLSRTMIVEHVWD 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 N+V+ ++ +LR K+ + + R +GY I+ N Sbjct: 181 QS-FEGLTNIVDVYVRQLRAKIDEPFDRKLIHTVRSVGYVINEN 223 >gi|160939834|ref|ZP_02087181.1| hypothetical protein CLOBOL_04725 [Clostridium bolteae ATCC BAA-613] gi|158437268|gb|EDP15033.1| hypothetical protein CLOBOL_04725 [Clostridium bolteae ATCC BAA-613] Length = 225 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 93/224 (41%), Gaps = 9/224 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +I+D + + G + EGF + E + D+ + L G Sbjct: 4 IYIIEDDENIMNLLKIALEGFGYAAEGFETAEEGLARMREEKPDLVIFDWML--PGMDGT 61 Query: 62 ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IY 116 E + +R VP++ ++ + D G DD + KP E+ AR+ + Sbjct: 62 EAIKEVRNTEQLKYVPIMLLTAKEKELDKVVGLDCGADDYMVKPFGVLELSARIRSLLRR 121 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + + I+V R+ G + L +E +L YL+ N+ + V + ++ + Sbjct: 122 TKREEDRDVLFYQDIQVNRKTREVSSGGRLVELTLKEFELLVYLLENQSRVVTRDELLNR 181 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I+G ++ E ++ HI LR+KL + G + + R +GY + Sbjct: 182 IWG-YEYDGETRTLDMHIRTLRQKLGEEGGA-CIKTVRGVGYRM 223 >gi|149912107|ref|ZP_01900695.1| putative DNA-binding response regulator [Moritella sp. PE36] gi|149804813|gb|EDM64853.1| putative DNA-binding response regulator [Moritella sp. PE36] Length = 237 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 40/226 (17%), Positives = 88/226 (38%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +K+ G S+ + + + ++ D+ ++ G+ Sbjct: 7 ILVVDDDVEIKELLSEYLDQAGFSVLTAGEGKEMQRVLATNTPDLIVLDVM--MPGDDGF 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------AI 115 L + IR SQVP+I ++ + + G DD + KP RE+LAR+ + Sbjct: 65 TLCQKIRRTSQVPIIMLTANSDEADRIVGLEIGADDYMAKPFSPRELLARIKALLRRSSY 124 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + + + + L E +L+ + N + +++ + Sbjct: 125 TKPTQGRYFIFAHWKLDTLTRQLINQHDNATTELSGSEFNMLKLFVTNPNQVLSRDALSD 184 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 A G + E ++ +S+LR+KL + + + R GY + Sbjct: 185 ATRGR-EALPLERGIDIQLSRLRQKLGDNSKSPTLIKTIRGRGYVL 229 >gi|50842818|ref|YP_056045.1| putative response regulator [Propionibacterium acnes KPA171202] gi|289425213|ref|ZP_06426990.1| response regulator receiver domain protein [Propionibacterium acnes SK187] gi|295130871|ref|YP_003581534.1| transcriptional regulatory protein, C-terminal domain protein [Propionibacterium acnes SK137] gi|50840420|gb|AAT83087.1| putative response regulator [Propionibacterium acnes KPA171202] gi|289154191|gb|EFD02879.1| response regulator receiver domain protein [Propionibacterium acnes SK187] gi|291375364|gb|ADD99218.1| transcriptional regulatory protein, C-terminal domain protein [Propionibacterium acnes SK137] gi|313764116|gb|EFS35480.1| response regulator receiver domain protein [Propionibacterium acnes HL013PA1] gi|313771854|gb|EFS37820.1| response regulator receiver domain protein [Propionibacterium acnes HL074PA1] gi|313792423|gb|EFS40518.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA1] gi|313801533|gb|EFS42778.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA2] gi|313809578|gb|EFS47314.1| response regulator receiver domain protein [Propionibacterium acnes HL083PA1] gi|313813262|gb|EFS50976.1| response regulator receiver domain protein [Propionibacterium acnes HL025PA1] gi|313816381|gb|EFS54095.1| response regulator receiver domain protein [Propionibacterium acnes HL059PA1] gi|313827322|gb|EFS65036.1| response regulator receiver domain protein [Propionibacterium acnes HL063PA2] gi|313829983|gb|EFS67697.1| response regulator receiver domain protein [Propionibacterium acnes HL007PA1] gi|313833010|gb|EFS70724.1| response regulator receiver domain protein [Propionibacterium acnes HL056PA1] gi|314914892|gb|EFS78723.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA4] gi|314918039|gb|EFS81870.1| response regulator receiver domain protein [Propionibacterium acnes HL050PA1] gi|314919689|gb|EFS83520.1| response regulator receiver domain protein [Propionibacterium acnes HL050PA3] gi|314930068|gb|EFS93899.1| response regulator receiver domain protein [Propionibacterium acnes HL067PA1] gi|314956471|gb|EFT00759.1| response regulator receiver domain protein [Propionibacterium acnes HL027PA1] gi|314957307|gb|EFT01410.1| response regulator receiver domain protein [Propionibacterium acnes HL002PA1] gi|314963204|gb|EFT07304.1| response regulator receiver domain protein [Propionibacterium acnes HL082PA1] gi|314967673|gb|EFT11772.1| response regulator receiver domain protein [Propionibacterium acnes HL037PA1] gi|314972933|gb|EFT17030.1| response regulator receiver domain protein [Propionibacterium acnes HL053PA1] gi|314975639|gb|EFT19734.1| response regulator receiver domain protein [Propionibacterium acnes HL045PA1] gi|314984091|gb|EFT28183.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA1] gi|315078181|gb|EFT50226.1| response regulator receiver domain protein [Propionibacterium acnes HL053PA2] gi|315080885|gb|EFT52861.1| response regulator receiver domain protein [Propionibacterium acnes HL078PA1] gi|315095758|gb|EFT67734.1| response regulator receiver domain protein [Propionibacterium acnes HL038PA1] gi|315098866|gb|EFT70842.1| response regulator receiver domain protein [Propionibacterium acnes HL059PA2] gi|315101706|gb|EFT73682.1| response regulator receiver domain protein [Propionibacterium acnes HL046PA1] gi|315109432|gb|EFT81408.1| response regulator receiver domain protein [Propionibacterium acnes HL030PA2] gi|327329939|gb|EGE71693.1| DNA-binding response regulator MtrA [Propionibacterium acnes HL097PA1] gi|327330096|gb|EGE71849.1| DNA-binding response regulator MtrA [Propionibacterium acnes HL096PA2] gi|327442666|gb|EGE89320.1| response regulator receiver domain protein [Propionibacterium acnes HL043PA1] gi|327443798|gb|EGE90452.1| response regulator receiver domain protein [Propionibacterium acnes HL043PA2] gi|327452406|gb|EGE99060.1| response regulator receiver domain protein [Propionibacterium acnes HL087PA3] gi|327452714|gb|EGE99368.1| response regulator receiver domain protein [Propionibacterium acnes HL083PA2] gi|327453471|gb|EGF00126.1| response regulator receiver domain protein [Propionibacterium acnes HL092PA1] gi|328752586|gb|EGF66202.1| response regulator receiver domain protein [Propionibacterium acnes HL025PA2] gi|328753863|gb|EGF67479.1| response regulator receiver domain protein [Propionibacterium acnes HL087PA1] gi|328761465|gb|EGF74990.1| DNA-binding response regulator MtrA [Propionibacterium acnes HL099PA1] Length = 236 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 37/224 (16%), Positives = 80/224 (35%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A + + + +G S + R + ++ L G + Sbjct: 10 ILVVDDDAALAEMLQLVLIKEGFSTAWVGHGSDVMDVFREHRPALVLLDLML--PGRDGI 67 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH---REILARVAAIYRR 118 + + IR S VP+I ++ + +G DD V KP + Sbjct: 68 RICQDIRRESGVPIIMLTARTDTPNVVQGLGAGADDYVCKPFRSAELIARIRARLRTPVS 127 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + G + + ++ GE L E +L + + ++ + ++ Sbjct: 128 RREEGEVITVGDLTIDPVAHLVQLGGEEISLTPLEYSLLVTMAQYPNRVFSRETLLREVW 187 Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 G + + +V H+ +LR K+ N + + R +GY I+ Sbjct: 188 G-YTNITDTRLVNVHVQRLRSKVERNADHPQMIVTVRGIGYRIN 230 >gi|262039153|ref|ZP_06012473.1| transcriptional activator protein CopR [Leptotrichia goodfellowii F0264] gi|261746769|gb|EEY34288.1| transcriptional activator protein CopR [Leptotrichia goodfellowii F0264] Length = 243 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 44/223 (19%), Positives = 90/223 (40%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + D + + + ++ + S D ++ L + Sbjct: 19 ILVVEDEKKINDVIVKILKQEKYGVDSCYDGQEALDYIFSVDYDAVILDIML--PKKDGF 76 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYR 117 E+ + IR + P++ ++ ++ + D G DD + KP E + + Sbjct: 77 EVLKKIREKNIKTPVLFLTARDRVEDRVKGLDYGADDYLIKPFAFEELLARVRVLLRKSS 136 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + N + + V + L +E ILEYL+ N+GK V+K +I + Sbjct: 137 DTSQTGNIFKVENLTVNCNDHTVFRDETSIKLSAKEFAILEYLIRNKGKVVSKEKIEEHV 196 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + FD N+VE +I LRKK+ + + + R +GY + Sbjct: 197 WD-FDYEGGSNIVEVYIKFLRKKIDDNFSPKLIHTIRRVGYIL 238 >gi|261339169|ref|ZP_05967027.1| hypothetical protein ENTCAN_05392 [Enterobacter cancerogenus ATCC 35316] gi|288319013|gb|EFC57951.1| DNA-binding response regulator SrrA [Enterobacter cancerogenus ATCC 35316] Length = 235 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 43/230 (18%), Positives = 89/230 (38%), Gaps = 11/230 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + D+G ++ L D ++ L L Sbjct: 4 ILLVEDDRDIAALLRLNLEDEGYTITHEPDGGNALRLLEKQSWDAVILDLML--PSVDGL 61 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILA-----RVAAI 115 E+ R IR ++ P+I IS S + ++G DD + KP +E++A Sbjct: 62 EICRRIRQMTRYLPVIIISARSSETDRITGLETGADDYLAKPFSVQELIARIKALFRRQQ 121 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 ++ + + R + G+ L RE +L + + G+ ++ ++ Sbjct: 122 AMGQAQNDGHIHAHGLTLDPLARTVRLNGQEVDLTPREFELLYFFARHPGEVFSRLELLE 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI-DWN 223 ++G + E+ V +HI++LR K+ + + V + GY + N Sbjct: 182 QVWG-YQHEGYEHTVNTHINRLRIKIEKDAAEPEIVRTVWGKGYKFAELN 230 >gi|218900386|ref|YP_002448797.1| DNA-binding response regulator [Bacillus cereus G9842] gi|218542036|gb|ACK94430.1| DNA-binding response regulator [Bacillus cereus G9842] Length = 223 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 42/226 (18%), Positives = 85/226 (37%), Gaps = 12/226 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +++ +G + + DV ++ L Sbjct: 3 ILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALERWNEG-PDVLILDVML--PDTDGY 59 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAI 115 EL R+ R +P++ ++ + L G DD V KP ++ R Sbjct: 60 ELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRVK 119 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 VS+ E G I + R V G+ L RE + + ++N + + ++ Sbjct: 120 KTETAVSHEVIEAGEIVICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 179 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G F+ V+ + +LRKKL + + + +GY +D Sbjct: 180 KVWG-FEYIGNTRAVDIMVQRLRKKLGTSG--EYIKTIYGVGYKLD 222 >gi|72383330|ref|YP_292685.1| two component transcriptional regulator [Prochlorococcus marinus str. NATL2A] gi|72003180|gb|AAZ58982.1| two component transcriptional regulator, winged helix family [Prochlorococcus marinus str. NATL2A] Length = 265 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 42/229 (18%), Positives = 86/229 (37%), Gaps = 10/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +LI+D ++D G ++ + L D+ ++ L G + Sbjct: 5 ILLIEDDQDMRDLVAGHLEHTGFDVQKAEDGIKGQALALQYAPDLILLDLMLPKVDGLTL 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R S +P++ I+ ++ + F+SG DD + KP E+ R+ A+ RR Sbjct: 65 CQRLRRDERTSAIPILMITALGGIKDKVTGFNSGADDYITKPFDLEELQVRIKALLRRTN 124 Query: 121 VSNNRAETGPIRVFS-------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + + + + L E +L LM G+ VA + I Sbjct: 125 RAPLGSNNQQEILDYGPLTLVPERFEAIWFESPVRLTHLEFELLHCLMQRHGQTVAPSLI 184 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 ++G ++ + + H+ LR KL + + + GY ++ Sbjct: 185 LKEVWG-YEPDDDIETIRVHVRHLRTKLEPDPRKPRFIKTVYGAGYCLE 232 >gi|302386943|ref|YP_003822765.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] gi|302197571|gb|ADL05142.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] Length = 235 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 45/225 (20%), Positives = 81/225 (36%), Gaps = 10/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + L G + + + S + ++ E Sbjct: 9 LVVDDEPKILEVVCLLLESKGFRTFPAENGQRALEIFESENISLIILDLM--MPDISGEE 66 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILA------RVAAIY 116 + R IR S+VP+I ++ ++ G DD V KP +E+ A R Sbjct: 67 VCRAIRKKSRVPIIMLTAKVDESDVVEGLGLGADDYVVKPFGLKELYARIEAVLRRTESD 126 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 V N G + + + +G L E +IL L+ GK + ++ A Sbjct: 127 LVPLVKRNSWRNGDLVTDFEKNEVRKKGVSLTLTPSELKILSVLIKYPGKVFTREELIEA 186 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 A + ++SHI +RKK+ + V + LGY Sbjct: 187 ALDKG-FAGYDRAIDSHIKNIRKKVEDDPKNPVYVRTIPGLGYKF 230 >gi|296157271|ref|ZP_06840107.1| two component transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] gi|295892607|gb|EFG72389.1| two component transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] Length = 220 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 55/221 (24%), Positives = 100/221 (45%), Gaps = 9/221 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D ++ +G +G +++ E +S D+ ++ L L Sbjct: 3 ILLVEDDRMIAEGVRKALRGEGFAVDWVEDGESALSAAASQPYDLVLLDLGL--PRRDGL 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ R +RA P++ ++ ++ + D+G DD + KP E+ AR+ A+ RR Sbjct: 61 DVLRTLRARGHALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQS 120 Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++ + + G L RE +LE L+A G ++K+Q+ +YG Sbjct: 121 GRSDSTIRLGNLTLDPASHQVTLDGAPVALSAREFALLEALLARPGAVLSKSQLEEKMYG 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + E + N VE +I LRKKL G D + + R LGY I Sbjct: 181 -WGEEIGSNTVEVYIHALRKKL----GADLIRNVRGLGYMI 216 >gi|289672518|ref|ZP_06493408.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. syringae FF5] gi|302186898|ref|ZP_07263571.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. syringae 642] Length = 224 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 38/223 (17%), Positives = 87/223 (39%), Gaps = 5/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G ++ + +L DV ++ L Sbjct: 3 ILVVEDEPKTAEYMHQGLTESGYIVDIAATGLDGLYLAQHQAYDVVILDVNL--PEMDGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119 E+ +R ++ ++ L+ + + G DD + KP E+ R Sbjct: 61 EVLSRLRKTVSTRIMMVTARGRLEEKVKGLEMGADDYLVKPFEFPELLARVRTLMRRSEQ 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++ + G + + + L +E +L LM + G+ +++TQI S ++ Sbjct: 121 TSTSKVLQVGDLELDQGRHRAFRGSQRIDLTTKEFALLHLLMRHSGEVMSRTQIISLVWD 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + + + NVVE I +LR K+ + + + R +GY ++ Sbjct: 181 M-NFDCDTNVVEVSIRRLRAKIDDPFETKLIHTLRGVGYVLEV 222 >gi|254252693|ref|ZP_04946011.1| Response regulator [Burkholderia dolosa AUO158] gi|124895302|gb|EAY69182.1| Response regulator [Burkholderia dolosa AUO158] Length = 235 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 44/226 (19%), Positives = 82/226 (36%), Gaps = 8/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++++D + + G + E + L S D+ ++ L G G Sbjct: 7 ILVVEDEPAISELISVNLQHAGHCPIRAYNAEQAQNLISDVLPDLVLLDWMLPGKSGIAF 66 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILA------RVAA 114 R +P+I ++ Q + + G DD V KP +E++A R A Sbjct: 67 ARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRRRA 126 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 V + + L E R+L + M + + ++TQ+ Sbjct: 127 PQLTEDVVSINGLRLDPATHRVAAQSDGSEIKLDLGPTEFRLLHFFMTHPERVHSRTQLL 186 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G VEE V+ HI +LR L+ +++ R GY + Sbjct: 187 DQVWGDH-VFVEERTVDVHIKRLRAALKPAGCDAMIETVRGSGYRL 231 >gi|117922448|ref|YP_871640.1| osmolarity response regulator [Shewanella sp. ANA-3] gi|117614780|gb|ABK50234.1| two component transcriptional regulator, winged helix family [Shewanella sp. ANA-3] Length = 241 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 36/229 (15%), Positives = 86/229 (37%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ + G + + E + L + ++ L GE L Sbjct: 8 ILVVDDDMRLRALLERYLMEQGYQVRSAANAEQMDRLLERENFHLIVLDLML--PGEDGL 65 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112 + R +R S +P++ ++ + + G DD + KP + RE + ++ Sbjct: 66 SICRRLRQQGSTIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQI 125 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + G + R+ E L E +L+ L+ + + +++ + Sbjct: 126 QDVPGAPAQQEAEISFGEFSLDLATREMYHGNEAIALTSGEFAVLKVLVTHPREPLSRDK 185 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + + G D + E ++ +S+LR+ + + + + LGY Sbjct: 186 LMNLARGR-DYSALERSIDVQVSRLRRLIEKDPANPRYIQTVWGLGYVF 233 >gi|327398349|ref|YP_004339218.1| winged helix family two component transcriptional regulator [Hippea maritima DSM 10411] gi|327180978|gb|AEA33159.1| two component transcriptional regulator, winged helix family [Hippea maritima DSM 10411] Length = 222 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 50/223 (22%), Positives = 107/223 (47%), Gaps = 5/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D I + +++ ++ + +L +++ D+ I+ L G L Sbjct: 3 ILLIEDDKETAHFIIKGLSESNYTVDHADNGKDGLYLAVNSKYDLLIIDRML--PGIDGL 60 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + +++RA ++P++ +S S+ ++ G DD + KP E+LAR+ + RR K Sbjct: 61 SIVKMLRAADKRMPILILSALGSVDEKVEGLRIGADDYLPKPYAFSELLARIEVLLRRNK 120 Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S + ++ + + L E ++L YL+ +RG+ + +T + I+G Sbjct: 121 ESQAKFLQVADLKINLENYTVTRAAKKIELKPTEFKLLVYLVRHRGQVITRTMLLENIWG 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 ++ + N+V+ HIS+LR K+ + + + R +GY I+ Sbjct: 181 -YNFDPQTNIVDVHISRLRSKIDRGFDKELIKTIRGIGYKIEE 222 >gi|325956445|ref|YP_004291857.1| response regulator [Lactobacillus acidophilus 30SC] gi|325333010|gb|ADZ06918.1| Response regulator [Lactobacillus acidophilus 30SC] Length = 238 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 44/233 (18%), Positives = 90/233 (38%), Gaps = 15/233 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D V + F +G + + + I L + + Sbjct: 3 ILMVEDDNSVAEMMGMFFKKEGWEQDIAVDGVEAVDMFKENADKYDLITLDLNLPKKDGI 62 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ + +RA S P+I ++ S + G D+ V KP ++AR+ A++RR+ Sbjct: 63 QVAKEVRAISPTVPIIMLTARGSESDQVLGLGIGADEYVTKPFSPIALIARIKALHRRVM 122 Query: 121 VSNNRAETGPIRVFS------------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 + A + V L +E +L + + Sbjct: 123 MEEKPALPQEKKQDYDIETEHLKISKSRREVLFDAQPVTDLTPKEFDLLYTMAQKPKQVF 182 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ Q+ ++G ++ EE V++HI KLR+KL K+G + + +GY D Sbjct: 183 SRDQLLELVWG-YEYYGEERTVDAHIKKLRQKLE-KVGAKVIQTVWGVGYKFD 233 >gi|297172289|gb|ADI23266.1| response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [uncultured actinobacterium HF0770_13M05] Length = 224 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 55/219 (25%), Positives = 98/219 (44%), Gaps = 3/219 (1%) Query: 5 IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVLEL 63 ++D A + + G S+ S E + + R D+ I+ L G + + Sbjct: 2 VEDDADISSLLRFSLENTGFSVFESPSAEAAMQILTERRTDLVIIDWMLPGMDGLNLTKT 61 Query: 64 PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLKVS 122 R ++P+I ++ + FDSGVDD + KP RE++ARV A+ R + Sbjct: 62 LRNRADTQKIPIIMLTARSDEADAIQGFDSGVDDYITKPFSPRELIARVNALLRRSTDGA 121 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 + E+ + + + ++ GE L R +L+YLM N + +++ Q+ +G Sbjct: 122 GSLIESNGMSLNTHNHTLQINGENLYLKPRVYGLLQYLMKNPNRILSRNQLLDGAWGRSV 181 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 VEE V+ +I +LRKKL + + +GY D Sbjct: 182 Y-VEERTVDVYIVRLRKKLEPSGKSAVIKTIHGVGYVYD 219 >gi|294788094|ref|ZP_06753338.1| phosphate regulon transcriptional regulatory protein PhoB [Simonsiella muelleri ATCC 29453] gi|294484387|gb|EFG32070.1| phosphate regulon transcriptional regulatory protein PhoB [Simonsiella muelleri ATCC 29453] Length = 232 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 43/222 (19%), Positives = 87/222 (39%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++++D A + G + S+E + L + D+ ++ L G + Sbjct: 5 ILIVEDEAAIATLIRFNLEQAGFQVSVSGSVEESKILINKQLPDLILLDWMLPQTSGVQF 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118 + R ++P+I ++ + G DD + KP RE++ARV A R Sbjct: 65 VGQLRADSRTRELPIILLTARSEDVDKETGLNQGADDYITKPFSPRELVARVNALLRRRA 124 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + N + + +V + E ++L + M + + + Q+ ++ Sbjct: 125 PQKTENIIRLSSLTLDPSQFSVQVADKKIEFSPSEFKLLHFFMTHPNRIYTRRQLLDLVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G VEE ++ HI +LR+ L + V + R GY Sbjct: 185 GDH-IFVEERTIDVHIRRLRRGLESVNLAHWVQTIRGSGYQF 225 >gi|269957744|ref|YP_003327533.1| winged helix family two component transcriptional regulator [Xylanimonas cellulosilytica DSM 15894] gi|269306425|gb|ACZ31975.1| two component transcriptional regulator, winged helix family [Xylanimonas cellulosilytica DSM 15894] Length = 246 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 53/241 (21%), Positives = 98/241 (40%), Gaps = 25/241 (10%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFE-EWLQSSAREDVSAIEAFLIGKGEKV 60 ++++D +D +G + E ++ D+ ++ L G Sbjct: 4 ILVVEDEESYRDPLTYQLAREGFDVVAAADGLEAIEKFEADGGIDIVLLDLML--PGLSG 61 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI----- 115 E+ R +R S VP+I ++ + + + G DD V KP RE+LARV A+ Sbjct: 62 TEVCRRLRLVSDVPVIMLTAKDTEIDKVVGLELGADDYVTKPYSFRELLARVRAVLRRRA 121 Query: 116 ---------------YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYL 160 + + + GP+R+ D V G LP +E +LE L Sbjct: 122 PVAVDPSGRARPDDGRHGWEDDDGVLDVGPVRMDVDRHTVTVDGAPVALPLKEFDLLELL 181 Query: 161 MANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219 + N G+ + + Q+ ++G D + ++ H+ +LR K+ G + + R LGY Sbjct: 182 LRNAGRVLTRGQLIDRVWGA-DYVGDTKTLDVHVKRLRAKIEPDPGTPRFLLTVRGLGYK 240 Query: 220 I 220 + Sbjct: 241 L 241 >gi|225174332|ref|ZP_03728331.1| two component transcriptional regulator, winged helix family [Dethiobacter alkaliphilus AHT 1] gi|225170117|gb|EEG78912.1| two component transcriptional regulator, winged helix family [Dethiobacter alkaliphilus AHT 1] Length = 224 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 44/223 (19%), Positives = 96/223 (43%), Gaps = 6/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D ++ A+ +G ++ L SA D+ + + G + Sbjct: 4 ILVVEDDRNLQKLMKAVLRQNGYNVLCAEDGVQALELLDSAHVDLIICDIMMPNMDGYAL 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-ARVAAIYRRL 119 + R A++ +P++ ++ + F G DD + KP+ E++ A + R Sbjct: 64 TDTLRK--ANNNLPVLMVTARETFDDKKKGFLVGTDDYMVKPVDMDEMVLRVAALLRRSR 121 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++ R G + + D + LP++E +L L++ + + Q+ I+G Sbjct: 122 IINERRLSIGEVELNYDTLTVHRNNNSYILPKKEFYLLFKLLSYPKQIFTRQQLMDEIWG 181 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + D +E V+ HI +LR+K + F+ + + R LGY + Sbjct: 182 M-DAEADERTVDVHIKRLREKFADFPEFE-IVTVRGLGYKAEK 222 >gi|168177980|ref|ZP_02612644.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|226947863|ref|YP_002802954.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] gi|182671519|gb|EDT83493.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|226844534|gb|ACO87200.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] Length = 230 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 44/229 (19%), Positives = 90/229 (39%), Gaps = 11/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++D ++G ++ + E + ++ ++ L Sbjct: 5 ILVVDDEKEIRDLLEINLINEGYNVFKASCGEEALEILEREEVNLMVLDIM--MPDMDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-------REILARVAA 114 E+ + R +P++ +S ++ +G DD V KP +H R +L R Sbjct: 63 EVCKRAREKYSIPILMLSAKVEDMDRIEGIMTGADDYVCKPFNHLELAVRIRALLRRAYF 122 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + ++++S+N + + + L RE IL L NRG + +IF Sbjct: 123 LNTKMQISDNIIRIESMVIDKKQHKVTINDNEIDLTAREFEILYLLANNRGMVFSAEEIF 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222 ++ N V H+S+LR K+ G + + +GY I+ Sbjct: 183 EKVWKER-YYQSNNTVMVHMSRLRDKIEQHMEGSKVIHTVWGVGYKIEK 230 >gi|88703693|ref|ZP_01101409.1| Response regulator receiver domain [Congregibacter litoralis KT71] gi|88702407|gb|EAQ99510.1| Response regulator receiver domain [Congregibacter litoralis KT71] Length = 258 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 42/234 (17%), Positives = 94/234 (40%), Gaps = 18/234 (7%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + D L + + L S D+ ++ L G L Sbjct: 24 ILVVEDDEDIARLIVMHLEDLNADLLHCDQGDKALQLALSNAWDLIVLDLRL--PGMGGL 81 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ R +R + P++ ++ S + + G DD ++KP E+ AR A+ RR + Sbjct: 82 DICRQLRERGNITPILMLTAKSSELDRVLGLELGADDYLSKPFSPLELTARAKALLRRTR 141 Query: 121 VSNNRAETG-------------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167 ++ ++ P + + G+ L RE +L + G+ Sbjct: 142 MNRHQENAELEQNGAAEPLKLGPFCICDRTHRVTMHGDRIELTSREFDLLLHFARQPGRV 201 Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++++ ++G + E+ V +HI++LR K+ + V++ +GY Sbjct: 202 FRRSELLDEVWG-YGHDGYEHTVNTHINRLRGKIETDPGNPQYVNTVWGVGYRF 254 >gi|330955030|gb|EGH55290.1| DNA-binding heavy metal response regulator [Pseudomonas syringae Cit 7] Length = 224 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 38/223 (17%), Positives = 87/223 (39%), Gaps = 5/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G ++ + +L DV ++ L Sbjct: 3 ILVVEDEPKTAEYMHQGLTESGYIVDIAATGLDGLYLAQHQAYDVVILDVNL--PEMDGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119 E+ +R ++ ++ L+ + + G DD + KP E+ R Sbjct: 61 EVLSRLRKTVSTRIMMVTARGRLEEKVKGLEMGADDYLVKPFEFPELLARVRTLMRRSEQ 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++ + G + + + L +E +L LM + G+ +++TQI S ++ Sbjct: 121 TTTSKVLQVGDLELDQGRHRAFRGSQRIDLTTKEFALLHLLMRHSGEVMSRTQIISLVWD 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + + + NVVE I +LR K+ + + + R +GY ++ Sbjct: 181 M-NFDCDTNVVEVSIRRLRAKIDDPFETKLIHTLRGVGYVLEV 222 >gi|318076622|ref|ZP_07983954.1| two-component system response regulator [Streptomyces sp. SA3_actF] Length = 266 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 45/232 (19%), Positives = 91/232 (39%), Gaps = 21/232 (9%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 + ++D ++++ G + + D++ ++ + G + Sbjct: 40 LFVEDDDVIREATQLALERVGFRVTAVPDGLQGLESFRAGAPDIALLDVMV--PGMDGVS 97 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R IR S VP+I +S + ++G DD V KP ++AR+ A+ RR + Sbjct: 98 LCRRIRDESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDVSVLVARLRAVMRRFGHA 157 Query: 123 NNRAETGPIRV--------------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 A ++G + GE L E R+L A G + Sbjct: 158 GGGARQAVEEEAAAAGPLRFGDLEVDTEGMEVRRGGERIALTPTEMRLLLEFSAAPGTVL 217 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ ++ ++ + + VV+ H+ +LR K+ G D +++ R GY + Sbjct: 218 SRDRLLERVWD-YGWGGDTRVVDVHVQRLRAKI----GQDRIETVRGFGYKL 264 >gi|314933599|ref|ZP_07840964.1| DNA-binding response regulator ArlR [Staphylococcus caprae C87] gi|313653749|gb|EFS17506.1| DNA-binding response regulator ArlR [Staphylococcus caprae C87] Length = 219 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 47/219 (21%), Positives = 84/219 (38%), Gaps = 4/219 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + +++ + D+ ++ L L Sbjct: 4 ILIVEDEQNLARFIELELKHEDYNVDIEYDGRTGLDKALNKSYDLIILDLML--PNINGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R IR P+I I+ + D G DD + KP E+ R + Sbjct: 62 KICRQIRQEQSTPIIIITAKGETYDKVAGLDYGADDYIVKPFDIEEL-LARIRAILRRQP 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 N + I + D V G L + E +L L NR + + QI ++G F Sbjct: 121 QKNVIDINGIIIDKDAFKVTVDGTQLELTKTEYDLLYVLAENRNHVMQREQILDHVWG-F 179 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + VE NVV+ +I LR KL+ +++ R +GY I Sbjct: 180 NSEVETNVVDVYIRYLRNKLKPFNKEKSIETVRGVGYVI 218 >gi|299541871|ref|ZP_07052194.1| transcriptional regulator [Lysinibacillus fusiformis ZC1] gi|298725609|gb|EFI66250.1| transcriptional regulator [Lysinibacillus fusiformis ZC1] Length = 228 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 44/223 (19%), Positives = 88/223 (39%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + G S+ + + + D+ ++ L K Sbjct: 4 ILVIEDEYPISQVLKVYLQKVGYSVTQCFNGGQALVMFRETQPDLVLLDIMLPEK--NGW 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 + + IR S P+I ++ + L+ FD G DD + KP E++ARV Sbjct: 62 TILKEIRERSTCPVIMLTALGEVNYRLEGFDHGADDYIGKPFIADEVVARVRAVLRRAVG 121 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 S + G + + + GE L R+ +L +L + + + Q+ ++ Sbjct: 122 SPDSATSKQYGSLVIDCKAHKVLLHGEEIVLTPRDLSVLMFLADHPNQTFTRDQLIDQVW 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220 G ++ + V+ I +LRK L+ + + + R LGY + Sbjct: 182 G-WEYEGSDRAVDLAIKRLRKALKEWDEAEGEIKTLRGLGYQL 223 >gi|169828429|ref|YP_001698587.1| regulatory protein [Lysinibacillus sphaericus C3-41] gi|168992917|gb|ACA40457.1| Regulatory protein [Lysinibacillus sphaericus C3-41] Length = 228 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 46/227 (20%), Positives = 91/227 (40%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD +++ ++G+ S D+ ++ + Sbjct: 5 ILVIDDDNDIRNLISVYLENEGMETIKVADAIKGLEFLKSNDVDLIILDIM--MPKMDGI 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-------REILARVAA 114 + IR +P+I +S + SG DD ++KP + + L R + Sbjct: 63 QACLKIREEKSMPIIMLSAKSEDIDKIQGLTSGADDYLSKPFNPLELIARVKSQLRRSSK 122 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 +K + E G + + +D R VQ + L +E ILE L N+G ++ +I+ Sbjct: 123 YNVNMKNNKKIIEIGNLVINTDTRQVIVQEKEIRLTPKEFDILELLAYNKGIVLSIQKIY 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 A++ D +N V HI+ +R+K+ + + + +GY I Sbjct: 183 EAVW-KEDYFKSDNTVMVHITNIREKIEQDPKHPIYIKTVWGVGYKI 228 >gi|1903396|gb|AAC45062.1| response regulator protein [Aeromonas jandaei] Length = 223 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 55/222 (24%), Positives = 99/222 (44%), Gaps = 6/222 (2%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + L++D A + D I DG +E F + + +R D ++ L Sbjct: 5 VIWLVEDEASIADTLIYALQTDGFEVEWFTLGQQLLSRLAQSRPDFLILDVGL--PDISG 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL + +R + PL+ ++ L + G DD V KP RE+ ARV I RR + Sbjct: 63 FELCKQVRTLTDTPLMFLTARSEEIDRLIGLEIGADDYVAKPFSPREVCARVRVILRRSQ 122 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 S + + + +G+ L R E +L+ LM G+ ++ Q+ ++ Sbjct: 123 PSA--QPAPLLALDEERARIHFRGQPLALTRYEYLLLKTLMQAPGRVYSRQQLMDLVWQD 180 Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 +E+++ V++HI +R KLR + + + R LGYS++ Sbjct: 181 AEESLD-RTVDTHIKTIRAKLREHDPEANLILTHRGLGYSLE 221 >gi|291167031|gb|EFE29077.1| DNA-binding response regulator [Filifactor alocis ATCC 35896] Length = 239 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 40/230 (17%), Positives = 86/230 (37%), Gaps = 13/230 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + + L + + D+ ++ + + Sbjct: 6 ILVVDDDVEIAKSIQLYLNSQNYKVLVAHDGQEALDLFHNQKIDLILMDIM--MPKKNGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + +IR S +P++ +S + + G DD + KP + E++ARV ++ RR Sbjct: 64 DTTMLIRQESIIPIVILSAKSEDTDKIMGLNIGADDYITKPFNPMELIARVNSVLRRYSR 123 Query: 122 SNNRAETGPIRV--------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 R + + + V E + E +IL LM+ GK + +I Sbjct: 124 YGGRYSEETEQSIRIGGIELNKETKQIFVDEEEVRITPLEYKILLLLMSYPGKVFSIDEI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 + ++ E V HI ++R+K+ N + +GY + Sbjct: 184 YEQVWKEPAYNPE--TVTVHIRRIREKIEINPKEPRYLKVVWGIGYKFEK 231 >gi|217960300|ref|YP_002338860.1| DNA-binding response regulator [Bacillus cereus AH187] gi|229139497|ref|ZP_04268068.1| Two component transcriptional regulator, winged helix [Bacillus cereus BDRD-ST26] gi|217065692|gb|ACJ79942.1| DNA-binding response regulator [Bacillus cereus AH187] gi|228644044|gb|EEL00305.1| Two component transcriptional regulator, winged helix [Bacillus cereus BDRD-ST26] Length = 215 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 38/220 (17%), Positives = 96/220 (43%), Gaps = 11/220 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++ DD + A F +G + E + + D++ ++ + Sbjct: 4 LIADDEQDMLRILKAYFEKEGFEVFLAKDGEEALQIFYDEKIDLAILDWM--MPKHSGIT 61 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + I+ +S V ++ ++ + L SG D+ V KP H ++ R ++L Sbjct: 62 VCKEIKKNSSVKVLMLTAKSESEDELAALQSGADEYVKKPFHPGVLITRA----KKLIQH 117 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 ++ + +++ + + + E +++ ++++G + + ++ ++G FD Sbjct: 118 DDVIQVQDLKIDFTKNKVYKNDKELDITKTELELIKCFLSHKGMILTRKKLLDIVWG-FD 176 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 EE V++H+ +LRKK+ + + + R LGYS++ Sbjct: 177 YFGEERTVDTHVRRLRKKVGE----NIIKTHRGLGYSLEE 212 >gi|325660728|ref|ZP_08149356.1| hypothetical protein HMPREF0490_00088 [Lachnospiraceae bacterium 4_1_37FAA] gi|325472802|gb|EGC76012.1| hypothetical protein HMPREF0490_00088 [Lachnospiraceae bacterium 4_1_37FAA] Length = 226 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 45/225 (20%), Positives = 98/225 (43%), Gaps = 10/225 (4%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 M ++D + +++ + G+ GF + ++ ++ L GE Sbjct: 1 MIYCVEDDSNIRELVVYTLESTGMKACGFPDGTAFMKALAFETPELVLLDIML--PGEDG 58 Query: 61 LELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 + L + ++ +P+I ++ + + DSG DD V KP E+++RV A+ R Sbjct: 59 ISLLKKLKSSAKTKDIPVIMVTAKGAEYDKVIGLDSGADDYVTKPFGMMELISRVKAVLR 118 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK--RVAKTQIFS 175 R K + + D + EV+ + P+ + + R K +++ ++ Sbjct: 119 RTKREEKSTQYEIRNLMLDQKKHEVRVDGIPVTLTLKEFELLELLIRNKNIVLSRDRLLE 178 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G +D E ++ HI LR+KL++ D +++ R +GY + Sbjct: 179 EVWG-YDFDGETRTIDVHIRTLRQKLKSAG--DLIETVRGVGYRM 220 >gi|306834849|ref|ZP_07467910.1| response regulator [Corynebacterium accolens ATCC 49726] gi|304569273|gb|EFM44777.1| response regulator [Corynebacterium accolens ATCC 49726] Length = 268 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 46/226 (20%), Positives = 85/226 (37%), Gaps = 10/226 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + G ++ DV ++ L LE Sbjct: 44 LVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGL--PELDGLE 101 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR S ++ ++ S + G DD + KP RE++ RV A+ RR + S Sbjct: 102 VCRRIRTFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRRPRTS 161 Query: 123 NNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + V L R E +L L G+ + + + + Sbjct: 162 TTPPQVTTPLIVGDLILDPVAHQVRVGETTVELTRTEFELLVALALRPGQVLTRHDLVTE 221 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 ++ +E +V+ HI LR+KL G +D+ R +GY ++ Sbjct: 222 VWDTT-WVGDERIVDVHIGNLRRKLGTDTQGRGFIDTVRGVGYRVE 266 >gi|296394611|ref|YP_003659495.1| transcriptional regulator [Segniliparus rotundus DSM 44985] gi|296181758|gb|ADG98664.1| two component transcriptional regulator, winged helix family [Segniliparus rotundus DSM 44985] Length = 228 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 42/220 (19%), Positives = 87/220 (39%), Gaps = 5/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + +G + R D+ ++ L G + Sbjct: 8 ILVVDDDVALAEMLTIVLRGEGFDPVVVSDGTKVLPAVRELRPDLVLLDVML--PGLNGI 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R +RA S VP++ ++ + +SG DD V KP +E++ARV A RR +V Sbjct: 66 DVCRQVRAESGVPIVMLTARTDTIDVVVGLESGADDYVMKPFKPKELVARVRARLRRNEV 125 Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + + ++ L E +L L + + + ++G Sbjct: 126 AAPEVLTIDDVEIDVLAHRVSRGDQIISLTPLEFDLLVALARKPRQVFTREVLLEQVWG- 184 Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219 + + +V H+ +LR K+ + V + R +GY Sbjct: 185 YRHPADTRLVNVHVQRLRAKVEKDPDAPRVVLTVRGVGYK 224 >gi|284044693|ref|YP_003395033.1| two component transcriptional regulator [Conexibacter woesei DSM 14684] gi|283948914|gb|ADB51658.1| two component transcriptional regulator, winged helix family [Conexibacter woesei DSM 14684] Length = 229 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 46/219 (21%), Positives = 94/219 (42%), Gaps = 4/219 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + +G + S D+ ++ L ++ Sbjct: 11 LVVEDDDEIAQVLQRSLRMEGYDVRTAGDGVSALDEAHSFLPDLVILDLGL--PKLDGID 68 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +R VP++ ++ +L++ ++ D+G DD + KP +E+LAR+ A+ RR Sbjct: 69 VARTLRRGDDVPILMLTARDALESRVEGLDAGADDYLVKPFERQELLARLRALLRRRPPR 128 Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + R+ D + L +RE +LEYLM N +++ ++ ++G + Sbjct: 129 GSAPLVVGDLRLNPDTHEVHRGERSIELTQREFELLEYLMRNERIVISRQRLLDEVWG-Y 187 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D N +E +S LR+KL + + R GY + Sbjct: 188 DPFSTTNTIEVFVSNLRRKLEADGEPRLLHTIRGAGYVL 226 >gi|257469388|ref|ZP_05633481.1| two-component response regulator [Fusobacterium ulcerans ATCC 49185] Length = 228 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 42/221 (19%), Positives = 92/221 (41%), Gaps = 6/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D ++ + S++ E S D+ ++ Sbjct: 4 ILIIEDEKKIRRYLQLELEHEKYSVDTAQDGEEGVEKFKSNFYDLILLDLM--MPKLSGE 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119 E+ +IIR S +P+I ++ + ++ D G DD + KP E+ AR+ + Sbjct: 62 EVCKIIRKTSNIPIIVLTAKDQILNKVELLDMGADDYLTKPFEIEELFARIRVALRNKSN 121 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + +++ + L + E + YL+ N+ V++ +I + ++G Sbjct: 122 FSNTDFLYYDILKLNLKTNILYKDEKEISLTKTEYNLFYYLLLNKELVVSREKILNEVWG 181 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D EE +V+ +I+ LRKK+ + + + R GY + Sbjct: 182 -YDYMGEEKIVDVYINALRKKI-DYDENKFIHTVRGFGYVL 220 >gi|229132720|ref|ZP_04261566.1| hypothetical protein bcere0014_16500 [Bacillus cereus BDRD-ST196] gi|228650730|gb|EEL06719.1| hypothetical protein bcere0014_16500 [Bacillus cereus BDRD-ST196] Length = 229 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 40/227 (17%), Positives = 87/227 (38%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D A++ + G +++ S E D+ ++ L G Sbjct: 4 ILIIEDEAIIAELEKDYLEVAGYTVDIDYSGEKGLQRVLLEDYDLLILDIML--PGIDGY 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + +R +P++ +S + G DD + KP E++ARV A R Sbjct: 62 EICKQVRLKKDIPILMVSAKQEEIDKIKGLGFGADDYIIKPFSPSEMVARVNAHLARYDR 121 Query: 122 SNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + E + R + G L +E +L + + + +K ++F Sbjct: 122 LTGKREQIKDEIRIRGLLIDKSARRVFINGTEVMLTGKEFDLLTCMAEHPNQVFSKDRLF 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++G+ D + V H+ +R+K+ + +++ +GY Sbjct: 182 ETVWGM-DVIGDAATVAVHVKNIRQKIELDPFDKSYIETIWGVGYRF 227 >gi|229167840|ref|ZP_04295572.1| Two-component response regulator [Bacillus cereus AH621] gi|228615656|gb|EEK72749.1| Two-component response regulator [Bacillus cereus AH621] Length = 228 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 46/226 (20%), Positives = 87/226 (38%), Gaps = 11/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++++ ++G ++ + + + ++ L Sbjct: 5 ILIVEDEDILREIMKDYLLNEGYNVLEAIDGKEALSIFEEHEVHLIILDIML--PELDGW 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR------EILARVAAI 115 + R IR S VP+I ++ TL F+ G DD V KP + L Sbjct: 63 AVCRRIRKKSNVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLIESRYT 122 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + I V R + + L E IL Y M N+G +++ Q+ + Sbjct: 123 STVNVSIEDTLTSSGIHVHFPSRTVNIDEKEINLTHTEFEILTYFMQNQGIVISREQLIN 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 I+G ++ A ++ V SHI LR KL K + + GY + Sbjct: 183 KIWG-YEFAGDDRTVNSHIRNLRHKLGQK--ATCIVTVVRTGYKFE 225 >gi|163734401|ref|ZP_02141841.1| probable two-component response regulator transcription regulator protein [Roseobacter litoralis Och 149] gi|161392409|gb|EDQ16738.1| probable two-component response regulator transcription regulator protein [Roseobacter litoralis Och 149] Length = 223 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 52/225 (23%), Positives = 107/225 (47%), Gaps = 11/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D A V D +G S++ + E L + DV ++ L G + Sbjct: 3 ILLIEDEARVADFVRRGLAAEGWSVDHAANGEDGLELAAQNNYDVVLLDLML--PGIQGQ 60 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R +RA S+ P++ ++ + ++ G DD + KP E++AR+ A++RR Sbjct: 61 GVCRKLRARKSKTPIMMLTALDGSEEKVEGLKIGADDYLPKPFDFDELVARIEALHRRAT 120 Query: 121 VS-----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + G I + V+ + L ++ER +L+ L+ + G+ +++ +I + Sbjct: 121 GYTADVSDTIITNGAITFDRASLEVNVEKKPIELTKKERDLLQLLLTSNGRVLSRERILN 180 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++GL + NVV+ ++ +LR+KL + + + R +GY + Sbjct: 181 TVWGL-NADPLTNVVDVYVGRLRRKLGQEG--QRIVTLRNVGYRM 222 >gi|262373811|ref|ZP_06067089.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter junii SH205] gi|262311564|gb|EEY92650.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter junii SH205] Length = 236 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 36/224 (16%), Positives = 81/224 (36%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ G + + R + ++ L G G + Sbjct: 6 ILIVDDELPIREMIHTSLDMAGFQCLQAEDAKQAHQIIVDQRPALILLDWMLPG-GVSGV 64 Query: 62 ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIY 116 +L R ++ +P+I ++ + D+G DD + KP RE+ + Sbjct: 65 DLCRRLKRDENLAEIPVIMLTARGEEDHKVQGLDAGADDYMTKPFSTRELVSRIKAVLRR 124 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + + + + + E R+L + M + + + Q+ Sbjct: 125 ANALSGEKVIDANGLMLDPVSQRVSFGNSILEMGPTEYRLLAFFMTHPERAYTRAQLLDQ 184 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + +E+ ++ HI +LRK L V + R GY Sbjct: 185 VWG-GNVYIEDRTIDVHIRRLRKVLEPFGVDRFVQTVRGTGYRF 227 >gi|187935582|ref|YP_001887366.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Clostridium botulinum B str. Eklund 17B] gi|187723735|gb|ACD24956.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridium botulinum B str. Eklund 17B] Length = 242 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 36/239 (15%), Positives = 73/239 (30%), Gaps = 23/239 (9%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + D + ++G + E L + + ++ L Sbjct: 6 ILVVEDEFSINDTLKFALSKENFEVKGAYNGESALKLLEEFQPHLVLLDIML--PDISGF 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI------ 115 EL + I V ++ D + + I Sbjct: 64 ELCKSISQKFYVIMLTARDDVIDKILGMEIGADDYITKPFEIREVIARINAIFRTAGKNI 123 Query: 116 --------------YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLM 161 + I + + R GE L R+E +L YL Sbjct: 124 WNNENNNMIMNVLECNTNDDNKGNTVEDEISINFNTRTVIKDGEEIILKRKEFELLSYLY 183 Query: 162 ANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 N+G + Q+ + ++G +D + V+ HI +LR L +++ +GY I Sbjct: 184 KNKGIVFTRQQLLNEVWG-YDYYGDTRTVDVHIRRLRANLGEDKENSVIETVFGVGYVI 241 >gi|157146486|ref|YP_001453805.1| hypothetical protein CKO_02246 [Citrobacter koseri ATCC BAA-895] gi|157083691|gb|ABV13369.1| hypothetical protein CKO_02246 [Citrobacter koseri ATCC BAA-895] Length = 235 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 41/230 (17%), Positives = 88/230 (38%), Gaps = 11/230 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + D+G ++ + D ++ L L Sbjct: 4 ILLVEDDHDIAALLRLNLEDEGYAITHQPDGGKALQCLETQPWDAVILDLML--PNVDGL 61 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILA-----RVAAI 115 E+ R IR ++ P+I IS S + ++G DD + KP +E++A Sbjct: 62 EICRRIRQMTRYLPVIIISARSSETDRITGLETGADDYLAKPFSVQELIARIKALFRRQQ 121 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + + + R + G+ L RE +L + + G+ ++ + Sbjct: 122 AMGQAQTAGHIQAHGLTLDPLARTVRLHGQDVDLTPREFELLYFFARHPGEVFSRLALLE 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI-DWN 223 ++G + E+ V +HI++LR K+ + + + + GY + N Sbjct: 182 QVWG-YQHEGYEHTVNTHINRLRIKIEKDAAEPEIIRTVWGKGYKFAELN 230 >gi|144899128|emb|CAM75992.1| two-component transcriptional regulator FeuP, winged helix family [Magnetospirillum gryphiswaldense MSR-1] Length = 222 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 54/221 (24%), Positives = 100/221 (45%), Gaps = 9/221 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + G +++ E L + D + ++ L + Sbjct: 3 ILIVEDEPALAFRLQQALEAAGFAVDTAYDGENGWHLGDTEPYDAAVLDLGL--PKLDGI 60 Query: 62 ELP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119 + R A +P++ ++ + F++G DD V KP EI+ R+ A I R Sbjct: 61 SVLSRWREAGRDLPVLILTARGRWSEKMQGFNAGADDYVTKPFEMDEIVYRLRALIRRAS 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S GP+R+ ++G + G+V L +E RIL YLM + GK V++T++ +Y Sbjct: 121 GHSQPELACGPVRLDTNGGRVSLDGQVLQLTAQEFRILSYLMHHPGKVVSRTELMEHVYD 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + NV+E I +LRKK+ G + + + R GY + Sbjct: 181 R-NFDSDSNVLEVMIGRLRKKI----GAEMIQTVRGQGYVL 216 >gi|123965391|ref|YP_001010472.1| two-component response regulator [Prochlorococcus marinus str. MIT 9515] gi|123199757|gb|ABM71365.1| two-component response regulator [Prochlorococcus marinus str. MIT 9515] Length = 260 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 40/229 (17%), Positives = 84/229 (36%), Gaps = 10/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 +LI+D +++ G ++ + L D+ ++ L G + Sbjct: 5 ILLIEDDRDMRELVAGHLEHSGFDVQKAEDGIKGQALALQYSPDLILLDLMLPSVDGLTL 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R S +P++ I+ L+ + F+SG DD + KP E+ R+ A+ RR Sbjct: 65 CQRLRRDERTSNIPILMITALGGLKDKVTGFNSGADDYITKPFDLEELHVRIKALLRRTN 124 Query: 121 VSNNRAETGPIRVFS-------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + + + + L E +L L+ G+ V+ I Sbjct: 125 RAQLNSTNQQEILNYGPLTLVPERFEAIWFESPVRLTHLEFELLHCLLQRHGQTVSPALI 184 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 ++G ++ + + H+ LR KL + + GY ++ Sbjct: 185 LKEVWG-YEPDDDIETIRVHVRHLRTKLEPDPRKPTYIKTVYGAGYCLE 232 >gi|56965768|ref|YP_177502.1| two-component response regulator [Bacillus clausii KSM-K16] gi|56912014|dbj|BAD66541.1| two-component response regulator [Bacillus clausii KSM-K16] Length = 226 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 45/221 (20%), Positives = 86/221 (38%), Gaps = 8/221 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + + + ++ D+ ++ +G Sbjct: 7 LVVDDEPELLELVVTYLRKESYRALTADNGADALKRIEQDAVDLVILDVM--MEGMDGFH 64 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + IR +P+I ++ + + +G DD + KP +E++ARV A RR + Sbjct: 65 VCERIRQKHSLPVIMLTARGNEADKVRGLKTGADDYMVKPFSPKELMARVEAALRRANMD 124 Query: 123 NNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 R DGR V G + L RRE +L +L N G+ ++ +F ++ Sbjct: 125 KIRGRRLVFGELELDQDGRAVTVAGSLISLTRREYELLLFLAENAGRAFSREHLFERVW- 183 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 A V++HI LR KL +++ +GY Sbjct: 184 TDTAASSLRTVDTHIKTLRLKL--NGAGRFIETVWGVGYKF 222 >gi|84497467|ref|ZP_00996289.1| putative two-component system response regulator [Janibacter sp. HTCC2649] gi|84382355|gb|EAP98237.1| putative two-component system response regulator [Janibacter sp. HTCC2649] Length = 254 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 52/226 (23%), Positives = 83/226 (36%), Gaps = 12/226 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D V A G R DV ++ L LE Sbjct: 26 LVVEDDPTVSSVLSAYLRRAGFEPVLAADGLTALQAWRERRPDVVILDVMLPL--MSGLE 83 Query: 63 LPRIIRAHSQVPLIGI-SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R RA + + S L + G DD + KP RE L RV A+ RR + Sbjct: 84 VLRRRRAEDDHAAVIVLSARGEEDDRLLGLELGADDYMVKPFSPREALGRVEALLRRAER 143 Query: 122 ------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 E +RV + R V G L RE +L YL+A+ G K Q+ Sbjct: 144 LGAVTLLPKVTERLGVRVDTGSRTATVDGRGVELTTREFDLLAYLIAHPGLTFTKEQLMR 203 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++G + + V H+ ++R+K+ + + + R GY Sbjct: 204 RVWGWD--FGDTSTVTVHVRRVREKIETDPSDPQRIVTVRGAGYRF 247 >gi|255282006|ref|ZP_05346561.1| DNA-binding response regulator CsrR [Bryantella formatexigens DSM 14469] gi|255267325|gb|EET60530.1| DNA-binding response regulator CsrR [Bryantella formatexigens DSM 14469] Length = 247 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 39/230 (16%), Positives = 86/230 (37%), Gaps = 14/230 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G ++ + + S + ++ L G L Sbjct: 11 ILVVEDEEKLARFVELELVHEGYTVSKAVNGREALEIALSGDFALILLDIML--PGLNGL 68 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI-----------LA 110 E+ R ++ P+I ++ ++ + D+G D + KP E+ Sbjct: 69 EVLRRLQQEKPTPVILLTARDAVMDKVAGLDAGAVDYITKPFAIEELLARIRVALKLHGD 128 Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + R + G +++ G L RE ++L+ L+ N+ + + Sbjct: 129 TRRSARRPEEEETGVYRWGRLQLSEKRHQVTYDGTEIILTNREFQMLKTLLENQDIVLTR 188 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + + G +D E NVV+ +I LR K+ + + R +GY I Sbjct: 189 EVLLNRVCG-YDYVGETNVVDVYIRFLRAKIDEAFQIKMIQTVRGVGYVI 237 >gi|206562306|ref|YP_002233069.1| two-component regulatory system response regulator protein [Burkholderia cenocepacia J2315] gi|198038346|emb|CAR54301.1| two-component regulatory system, response regulator protein [Burkholderia cenocepacia J2315] Length = 223 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 43/221 (19%), Positives = 95/221 (42%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A + + +++ + + +L D+ ++ L Sbjct: 3 ILIVEDEAKMASYLRKGLTEASYTVDVAENGKDGLFLALHEDFDLVVLDVML--PELDGF 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +RA Q P++ ++ +++ + + G DD + KP + E LAR+ ++ RR Sbjct: 61 EVLRRLRAQKQTPVLLLTARDAIEDKVAGLELGADDYLLKPFAYAEFLARIRSLLRRAPR 120 Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + R L +E +L+ L G+ + +T I S I+ + Sbjct: 121 NVRDILHVADLEIDLLKRRVRRADARIDLTAQEFALLQLLAEREGEVLTRTFITSQIWDM 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + NVV++ I +LR K+ N + + R +GY ++ Sbjct: 181 -NFDSDTNVVDAAIKRLRAKIDNAYEKKLIHTIRGMGYVLE 220 >gi|41407200|ref|NP_960036.1| TcrA [Mycobacterium avium subsp. paratuberculosis K-10] gi|41395551|gb|AAS03419.1| TcrA [Mycobacterium avium subsp. paratuberculosis K-10] Length = 222 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 46/220 (20%), Positives = 91/220 (41%), Gaps = 5/220 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L++D + +G + + + D+ ++ L G E Sbjct: 4 LLVEDEPRLAATVARGLKAEGFVVVTVGNGVDGLAEATENPFDIVILDIML--PGRSGYE 61 Query: 63 LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120 + R +R+++ P++ ++ D FD G DD + KP R ++AR+ A + R Sbjct: 62 VLRRMRSNNVWTPVLMLTAKDGEYDETDAFDLGADDYLTKPFSFRVLVARLRALVRRGAP 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 G + + + L RE +LE+LM N+ V K I + ++ Sbjct: 122 ERPVVLTAGSLSLDPARHTVQRGSTPIALTPREYGVLEFLMRNKDVVVTKADILANVWDA 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + NVVE ++ LR+K+ G + +++ R +GY + Sbjct: 182 HHHGPD-NVVEVYVGYLRRKIDVPFGTNTIETIRGVGYRL 220 >gi|330002909|ref|ZP_08304459.1| transcriptional activator protein Irlr [Klebsiella sp. MS 92-3] gi|328537146|gb|EGF63418.1| transcriptional activator protein Irlr [Klebsiella sp. MS 92-3] Length = 232 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 36/224 (16%), Positives = 97/224 (43%), Gaps = 6/224 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G ++ ++ L ++ D+ ++ L Sbjct: 8 ILIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTSDYDLLILDIML--PDVNGW 65 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118 ++ R++R A +P++ ++ +++ + + G DD + KP E+LARV Sbjct: 66 DIVRMLRTAGKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 125 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + ++ + + V R L +E +LE+ + ++G+ + ++ I S ++ Sbjct: 126 AVIVESQFQAADLSVDLVSRKVTRGATRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 185 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + + + N ++ + +LR K+ N + + R +GY ++ Sbjct: 186 DM-NFDSDTNAIDVAVKRLRAKIDNDFEPKLIQTVRGVGYMLEV 228 >gi|323483719|ref|ZP_08089099.1| regulatory protein VanR [Clostridium symbiosum WAL-14163] gi|323402910|gb|EGA95228.1| regulatory protein VanR [Clostridium symbiosum WAL-14163] Length = 236 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 50/230 (21%), Positives = 86/230 (37%), Gaps = 13/230 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 + DD +++ L +G + ++ + S D+ ++ G+ + Sbjct: 10 ILFADDDPEIREVVRILLEHEGFEVIEASNGKEAVEK-SGGSVDLIILDVM--MPGKSGI 66 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 IR VP++ ++ F +G DD + KP + E++ARV A+ RR V Sbjct: 67 LACLEIRKKLTVPILFLTARTQDSDKALGFCAGGDDYLAKPFSYTELVARVKAMLRRYYV 126 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPL---------PRRERRILEYLMANRGKRVAKTQ 172 V RD + + + E RIL L NRGK Sbjct: 127 YQGGGNRKEDDVQIQIRDLLLNKDSREVRLEGGEILLTDLEYRILLLLAENRGKIFTIQN 186 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 I+ +++ + N V HI LRKKL + + + GY I+ Sbjct: 187 IYESVWEEPYYYISNNTVMVHIRNLRKKLEKDPKNPKYIVNVWGKGYRIE 236 >gi|260890602|ref|ZP_05901865.1| DNA-binding response regulator ArlR [Leptotrichia hofstadii F0254] gi|260859647|gb|EEX74147.1| DNA-binding response regulator ArlR [Leptotrichia hofstadii F0254] Length = 226 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 95/224 (42%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + +G + + + D+ ++ L + Sbjct: 5 ILVIEDDPKISRLLEIELKFEGFDVFFAYDGKEGLNMAKYGSYDIILLDVML--PKMSGM 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IR SQVP+I ++ + + FD G DD + KP + E+LAR+ A+ RR K Sbjct: 63 EVCKRIRETSQVPIIMLTAKDEISDKVVGFDYGADDYMTKPFSNEELLARIKALLRRTKK 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF-----PLPRRERRILEYLMANRGKRVAKTQIFSA 176 S + + L +RE +L++L+ N+G +++ +I Sbjct: 123 SVVHKGIFEFEDLTINYSTYEVFREYGKNLIQLSKREFELLDFLVLNKGIVLSRDKILEE 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G FD +N+++ +I LR K+ + + R +G+ Sbjct: 183 VWG-FDYIGNDNILDLYIKYLRDKIDRPYERKFIQTVRGIGFIF 225 >gi|188996277|ref|YP_001930528.1| two component transcriptional regulator, winged helix family [Sulfurihydrogenibium sp. YO3AOP1] gi|188931344|gb|ACD65974.1| two component transcriptional regulator, winged helix family [Sulfurihydrogenibium sp. YO3AOP1] Length = 231 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 42/227 (18%), Positives = 99/227 (43%), Gaps = 9/227 (3%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEK 59 + +I+D + + F +G + F + + + D+ ++ + G + Sbjct: 3 LIYVIEDDEDINELLTYNFKKEGFDVRSFPNGKVAFEHIKQEKPDIVVLDLMMPEVDGLE 62 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAA 114 +L R + +PLI ++ + + + G DD V KP RE+LAR + Sbjct: 63 FCKLVRSDKELEHIPLIMLTAKSTEIDKIVGLELGADDYVTKPFSFRELLARVKALLRRS 122 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + G +++ + + ++G+ L + ++L L+ ++GK +++ I Sbjct: 123 KSLHFPTAKPEYKFGDLKISPEKFEVTIKGQPVHLTTTQFKLLLALVNSQGKVLSRDYII 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ +D+ V + ++ HI KLR+ L+ + + R +GY + Sbjct: 183 EHVW-AWDKDVYDRTIDVHIKKLRELLKEYGN--CIKTIRGVGYKWE 226 >gi|304407984|ref|ZP_07389634.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] gi|304343003|gb|EFM08847.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] Length = 231 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 45/226 (19%), Positives = 90/226 (39%), Gaps = 12/226 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++I+D + D ++ + S +V ++ L + + Sbjct: 5 LIIEDDNIFGDMLSLYLTEEQYEVTRVPSAGEGLRALQEFAPNVVLLDLML--PDTEGIN 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 ++R + +P+I IS + + G DD + KP +E+ AR+ A+ RR + Sbjct: 63 ACAMLRGFTTIPIIVISAETKVSERILSLSEGADDYLCKPFSMQELKARIEAVLRRTNMQ 122 Query: 123 N--------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + A+ + + R G E I++ L N GK ++ ++ Sbjct: 123 SAVIAPPAAPNADEWTLVLDMARRLLICNGNEIETTFSEFEIIKLLYHNPGKVFSREELI 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219 +AI G+ D + E ++ HI+ LRKK+ N + + +GY Sbjct: 183 NAIRGI-DSYINERAIDVHITNLRKKIEQNPKEPQYIKTVWGVGYK 227 >gi|238026792|ref|YP_002911023.1| response regulator [Burkholderia glumae BGR1] gi|237875986|gb|ACR28319.1| Response regulator [Burkholderia glumae BGR1] Length = 235 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 46/226 (20%), Positives = 82/226 (36%), Gaps = 8/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++I+D + + G + E + L S D+ ++ L G G Sbjct: 7 ILVIEDEPAISELISVNLQHAGHCAIRAYNAEQAQNLISDVLPDLVLLDWMLPGKSGIAF 66 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILA------RVAA 114 R +P+I ++ Q + + G DD V KP +E++A R A Sbjct: 67 ARELRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRRRA 126 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 V + E L E R+L + M + + ++TQ+ Sbjct: 127 PQLTEDVVSINGLRLDPATHRVAASAEGSEIKLDLGPTEFRLLHFFMTHPERVHSRTQLL 186 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G VEE V+ HI +LR L+ +++ R GY + Sbjct: 187 DQVWGDH-VFVEERTVDVHIKRLRAALKPAGCDAMIETVRGSGYRL 231 >gi|210631746|ref|ZP_03296988.1| hypothetical protein COLSTE_00873 [Collinsella stercoris DSM 13279] gi|210159866|gb|EEA90837.1| hypothetical protein COLSTE_00873 [Collinsella stercoris DSM 13279] Length = 241 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 50/227 (22%), Positives = 90/227 (39%), Gaps = 13/227 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-----EDVSAIEAFLIGKG 57 +++DD + D F +G + N S++R D+ ++ + Sbjct: 14 LVVDDEVEIADMLAEYFRMEGYDVATANDGAAALEAVSASRGGRGAFDIILLDVNMT--N 71 Query: 58 EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 E+ R IR H P+I ++ +D F +G DD V KP + RVAA Sbjct: 72 MDGFEVCRRIREHLSCPIIFLTARVEDVDQIDGFAAGADDYVLKPFSLEVLGRRVAAHMA 131 Query: 118 RLKVSNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 R + + + R EV G L + E ++ L G+ + I Sbjct: 132 REGRARRQEQAVRFFRGLTIDYGSRTVEVAGSPVDLTKLEFDLVALLSKRPGQVFDREAI 191 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYS 219 + ++G +D A + + V H+ ++R KL DP+++ +GY Sbjct: 192 YERVWG-WDAAGDPSQVREHVRRIRNKLAAAGLDEDPIETVWGVGYR 237 >gi|157369751|ref|YP_001477740.1| two component transcriptional regulator [Serratia proteamaculans 568] gi|157321515|gb|ABV40612.1| two component transcriptional regulator, winged helix family [Serratia proteamaculans 568] Length = 237 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 40/228 (17%), Positives = 85/228 (37%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + D+G + + D ++ L G L Sbjct: 7 ILIVEDDGNIAELLQLHLRDEGYDISHAADGNLGMAMLEQGGWDALILDLML--PGIDGL 64 Query: 62 ELPRI-IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-------REILARVA 113 E+ R P+I S S + + G DD + KP + + R Sbjct: 65 EICRRARNMTRYTPIIITSARSSEVHRVLGLELGADDYLAKPFSMLELVARVKALFRRQE 124 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 A+ R L++ + + R+ + + L RE +L + + GK ++ + Sbjct: 125 AMSRNLRMDAGTLSFDGLTIDPIAREVHLNQQTIDLTPREFDLLYFFAKHPGKVFSRLSL 184 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + ++G + E+ V +HI++LR K+ N + + + +GY Sbjct: 185 LNQVWG-YQHEGYEHTVNTHINRLRIKIETNPAEPERILTVWGMGYKF 231 >gi|239940925|ref|ZP_04692862.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239987401|ref|ZP_04708065.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] gi|291444359|ref|ZP_06583749.1| two component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291347306|gb|EFE74210.1| two component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 219 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 44/222 (19%), Positives = 90/222 (40%), Gaps = 10/222 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ +D + +G + + + D+ ++ L G Sbjct: 4 ILIAEDEERIASFVQKGLRANGFTTVVAEDGDLALGHALTGGFDLMVLDIGL--PGRDGF 61 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R +R P+I ++ S++ T+ + G DD + KP E+LARV R Sbjct: 62 TVLRELREARVTLPVIVLTARDSVRDTVAGLEGGADDWMTKPFRFEELLARVRLRRRTAA 121 Query: 121 VSNNRAETGPIR--VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + R + L RE +LE + + G+ +++ QI S ++ Sbjct: 122 RAPEVTMLRSGTLALDLRTRRARAEDRTVDLTAREFVLLEMFLRHPGQVLSREQILSHVW 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G +D N+V+ ++ LR+KL G + +++ R +GY + Sbjct: 182 G-YDFDPGSNIVDVYVRALRRKL----GAERLETVRGMGYRL 218 >gi|291294702|ref|YP_003506100.1| two component transcriptional regulator, winged helix family [Meiothermus ruber DSM 1279] gi|290469661|gb|ADD27080.1| two component transcriptional regulator, winged helix family [Meiothermus ruber DSM 1279] Length = 221 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 44/220 (20%), Positives = 89/220 (40%), Gaps = 8/220 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L+DD +++ +G + + L + L+ + Sbjct: 5 LLVDDDPAIREVLGVYLRQEGCEVLEATNGLEALQLL----PQADVVILDLMLPQLTGWQ 60 Query: 63 LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + +R + +PL+ ++ + + G DD V KP RE++ARV A+ RR Sbjct: 61 VAQELRRDYPDLPLLMLTARGEEAERIQGLELGADDYVTKPFSPREVVARVRALLRRSGF 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 I R+ +G+ L + E +L L + G ++ ++ ++G Sbjct: 121 KQELVFGDLILR-PRQREALFKGQALNLSKLEFDLLLTLAQHPGLVWSRERLLERVWG-S 178 Query: 182 DEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220 D + VV+ H++ LRKKL + +++ R +GY Sbjct: 179 DFPGVDRVVDVHVAGLRKKLGEDAENPLYIETVRGVGYRF 218 >gi|218231365|ref|YP_002370039.1| DNA-binding response regulator [Bacillus cereus B4264] gi|228903747|ref|ZP_04067865.1| DNA-binding response regulator [Bacillus thuringiensis IBL 4222] gi|218159322|gb|ACK59314.1| DNA-binding response regulator [Bacillus cereus B4264] gi|228855893|gb|EEN00435.1| DNA-binding response regulator [Bacillus thuringiensis IBL 4222] Length = 223 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 42/226 (18%), Positives = 85/226 (37%), Gaps = 12/226 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +++ +G + + DV ++ L Sbjct: 3 ILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALERWNEG-PDVLILDVML--PDTDGY 59 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAI 115 EL R+ R +P++ ++ + L G DD V KP ++ R Sbjct: 60 ELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRVK 119 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 VS+ E G I + R V G+ L RE + + ++N + + ++ Sbjct: 120 KTEAAVSHEVIEAGEIVICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 179 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G F+ V+ + +LRKKL + + + +GY +D Sbjct: 180 KVWG-FEYIGNTRAVDIMVQRLRKKLGTSG--EYIKTIYGVGYKLD 222 >gi|218778981|ref|YP_002430299.1| two component transcriptional regulator, winged helix family [Desulfatibacillum alkenivorans AK-01] gi|218760365|gb|ACL02831.1| two component transcriptional regulator, winged helix family [Desulfatibacillum alkenivorans AK-01] Length = 234 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 44/223 (19%), Positives = 90/223 (40%), Gaps = 8/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + +G+++ E R D ++ L + + Sbjct: 8 ILMIEDDQRLAKLTQEYLERNGLAVSLSGDGEAGLQQALQHRFDAIVLDLMLPAR--DGI 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + IR HS P+I ++ + + G DD + KP RE+LAR+ A+ RR + Sbjct: 66 SVCQRIREHSDAPIIMVTARGEEADRVMGLEIGADDYLPKPFSPRELLARIRAMVRRARG 125 Query: 122 SNNRAETGPI----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + + + G L E +L+ L G+ +++ ++ Sbjct: 126 QAGPRSSVVVVGDLMLDPAALTAVLDGAPLDLTTYEFALLKALAERAGQVLSRERLMELA 185 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYS 219 G +EA + ++ HIS+LR+K+ + + + R GY Sbjct: 186 KGNAEEAFD-RSIDVHISRLRQKIGDDPRHPTRIRTVRGAGYQ 227 >gi|33864253|ref|NP_895813.1| two-component response regulator [Prochlorococcus marinus str. MIT 9313] gi|33641033|emb|CAE22162.1| two-component response regulator [Prochlorococcus marinus str. MIT 9313] Length = 268 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 39/229 (17%), Positives = 85/229 (37%), Gaps = 10/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +LI+D +++ + +G ++ + L D+ ++ L G + Sbjct: 5 ILLIEDDQDMRELVSSHLEHNGFDVQNAEDGIKGQALALQYTPDLILLDLMLPNVDGLTL 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R + +P++ I+ + + F+SG DD + KP E+ RV ++ RR Sbjct: 65 CQRLRRDERTAGIPILMITALAGTKDKVTGFNSGADDYLTKPFDLEELQVRVKSLLRRTD 124 Query: 121 VSNNRAETGPIRVFS-------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + + + L E +L L+ G+ VA + I Sbjct: 125 RAPVGTNAHHEILSYGPLTLVPERFEVIWFERPVRLTHLEFELLHCLLQRHGQTVAPSLI 184 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 ++G ++ + + H+ LR KL + + GY ++ Sbjct: 185 LKEVWG-YEPDDDIETIRVHVRHLRTKLEPDPRKPRFIKTVYGAGYCLE 232 >gi|290352215|dbj|BAI78818.1| putative two-component response regulator [Streptococcus pyogenes] Length = 228 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 46/224 (20%), Positives = 89/224 (39%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + +G + + D+ ++ L Sbjct: 5 ILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLML--PEMDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R ++ ++ ++ S+ + D G DD + KP E+LAR+ AI+R + Sbjct: 63 EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRLQDI 122 Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + R + L +RE +L LM N + + + ++ S Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +DEAVE NVV+ +I LR K+ + + R +GY I Sbjct: 183 VW-KYDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225 >gi|297588607|ref|ZP_06947250.1| DNA-binding response regulator [Finegoldia magna ATCC 53516] gi|297573980|gb|EFH92701.1| DNA-binding response regulator [Finegoldia magna ATCC 53516] Length = 218 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 41/220 (18%), Positives = 98/220 (44%), Gaps = 6/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++++G + G + + + +++ ++ L L Sbjct: 3 LLVVEDDKMIREGICEFLSEFGYKTYQAEDGKQAISIFENNEINLAILDIQL--PYINGL 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IR S +P I ++ + + ++ F S D + KP R+ ++ ++ Sbjct: 61 EVLKKIRETSDIPAIMLTAFSDEEYKINAFTSLADGYIEKPFSLPVFKVRIESLIKKYYG 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 +N V ++ G+ + +E IL+Y++ N G+ + + QI +++ Sbjct: 121 NNETFNYKNTEVNFTSYTAKINGKKVDVNAKELEILKYMIENEGQALTRMQIIDSVWKET 180 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 DE + V++ +I +LRKKL D + + R +GY ++ Sbjct: 181 DEIPFDRVIDVYIKELRKKLEL----DCIVTIRNVGYKLE 216 >gi|171058578|ref|YP_001790927.1| osmolarity response regulator [Leptothrix cholodnii SP-6] gi|170776023|gb|ACB34162.1| two component transcriptional regulator, winged helix family [Leptothrix cholodnii SP-6] Length = 244 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 41/230 (17%), Positives = 84/230 (36%), Gaps = 14/230 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 V++DD A ++D +G + + + + D+ ++ L GE L Sbjct: 12 IVVVDDDARIRDLLRRYLTQEGFEVLLAEDSKALNRILTRETVDLIVLDLML--PGEDGL 69 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILAR 111 + R +R A+ P+I ++ + + G DD + KP + RE Sbjct: 70 SICRRLRAANDITPIIMLTAKVDDVDRIVGLEVGADDYLPKPFNPRELLARINAVLRRRP 129 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 V GP R GEV L E +L+ L+ + + +++ Sbjct: 130 VMEAPGAPSREAQSVTFGPFEFDLALRRLTRDGEVISLTTGEFSMLKALVRHPRQPLSRD 189 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++ G + + ++ +S+LRK + + + + +GY Sbjct: 190 KLAQLARGR-EFEPFDRSLDVQVSRLRKMIEPDPSQPRYIQTVWGVGYVF 238 >gi|168182818|ref|ZP_02617482.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|237794261|ref|YP_002861813.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] gi|182673963|gb|EDT85924.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|229263864|gb|ACQ54897.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] Length = 240 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 49/227 (21%), Positives = 96/227 (42%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 ++IDD + + +G + +LE + D+ ++ L + Sbjct: 11 ILIIDDEEDIVRLIRTVLKKEGFQNIYYATNLEDGLKEFNKVEPDILILDVML--PDGEG 68 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL + IRA S+VP++ +S + F G DD + KP +E+ RV A RR Sbjct: 69 YELCKTIRAKSKVPILFLSAKGEEIDKILGFAIGGDDYITKPFSTKELAYRVKAHLRRYS 128 Query: 121 VSNNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N E GP + + + +G + L +E ++ + + + ++K +I Sbjct: 129 YVENAIEEKNILSFGPFELNMSKGEFKKEGRLIELKPKELALIAFFAKHPNQIISKEKIC 188 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++G D +N + HI +LR+K+ + + + + LGY + Sbjct: 189 DNVWGE-DYYGFDNTIMVHIRRLREKIEKEPSKPEYLINVKGLGYKL 234 >gi|325265320|ref|ZP_08132045.1| DNA-binding response regulator [Clostridium sp. D5] gi|324029499|gb|EGB90789.1| DNA-binding response regulator [Clostridium sp. D5] Length = 234 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 43/222 (19%), Positives = 89/222 (40%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D +++ I G + + L + D+ ++ Sbjct: 16 ILIVEDEKNMQEIMIEYMRKGGHTCFAADDGVDALMLLKNHPMDLMVLDIM--MPHLDGF 73 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + ++ R S +P+I ++ S L ++ G DD + KP R +LA+ A+ RR Sbjct: 74 SVCKMAREMSSLPIIMLTARSSEDDKLKGYEYGADDYMTKPFSPRVLLAKANALLRRSSS 133 Query: 122 SNNRAETGPIRVFSD-GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + V G+ L +E +L + + N G+ ++ Q+ + I+G Sbjct: 134 GKTDSLHAGKITLIPASHKVFVDGQEVTLTHKEYELLHFFLTNSGQIFSRDQLLNRIWG- 192 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D A V++HI LR+KL + + + GY + Sbjct: 193 YDFAGTTRTVDTHIKTLRQKLGD--ESRHIVTLIRSGYKFEE 232 >gi|296505684|ref|YP_003667384.1| two-component response regulator [Bacillus thuringiensis BMB171] gi|296326736|gb|ADH09664.1| two-component response regulator [Bacillus thuringiensis BMB171] Length = 223 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 42/226 (18%), Positives = 85/226 (37%), Gaps = 12/226 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +++ +G + + DV ++ L Sbjct: 3 ILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALEKWNEG-PDVLILDVML--PDTDGY 59 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAI 115 EL R+ R +P++ ++ + L G DD V KP ++ R Sbjct: 60 ELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRVK 119 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 VS+ E G I + R V G+ L RE + + ++N + + ++ Sbjct: 120 KTDAAVSHEVIEAGEIVICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 179 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G F+ V+ + +LRKKL + + + +GY +D Sbjct: 180 KVWG-FEYIGNTRAVDIMVQRLRKKLGTSG--EYIKTIYGVGYKLD 222 >gi|237795357|ref|YP_002862909.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] gi|229261731|gb|ACQ52764.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] Length = 229 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 48/227 (21%), Positives = 88/227 (38%), Gaps = 9/227 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + F D G S+ ++ D+ I ++ Sbjct: 5 ILIVDDEDDIVSFIKDYFQDQGYSIITASNGREAIEYCDK---DIDIILLDIMMPNIDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + IR P+I +S S + G DD + KP +E+ ARV A RR K Sbjct: 62 QICQKIRDKVSCPIIFLSARQSEFDKIKGLSVGGDDYIVKPFSIKELKARVQAHLRREKR 121 Query: 122 SNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + R + E +E I+E L + + +K QI+ + Sbjct: 122 VPLNNRSKISFGKLTLDINSRRVHYEEEEILFTAKEFDIVELLALHPEQVFSKEQIYEKV 181 Query: 178 YGLFDEAVEENVVESHISKLRKK-LRNKLGFDPVDSKRFLGYSIDWN 223 +G +D + N V HI K+R K ++ + + + +GY + N Sbjct: 182 WG-YDAEGDANTVAEHIKKIRAKFIKINASLNHIATVWGVGYRWEKN 227 >gi|146329260|ref|YP_001209793.1| two-component copper resistance response regulator [Dichelobacter nodosus VCS1703A] gi|146232730|gb|ABQ13708.1| two-component copper resistance response regulator [Dichelobacter nodosus VCS1703A] Length = 229 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 47/223 (21%), Positives = 92/223 (41%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + G ++ ++ + + DV ++ L L Sbjct: 3 ILVIEDDQDAAAYIAKGLTESGYVVDTAHTGSKGLMIAQKGQYDVLIVDRML--PELDGL 60 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYR 117 L + +RA P++ +S + ++ +G DD + KP E + +A Sbjct: 61 SLIQQLRAQGASTPVLILSALGEVDDRVEGLAAGGDDYLVKPYAFSELLARVQSLARRRN 120 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 E + + R G+ L RE R+LEYLM+N G+ V +T + + Sbjct: 121 TDVHDQMVLEIADLHLDRLRRKVTRAGKKINLQPREFRLLEYLMSNSGQVVTRTMLLEKV 180 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + ++ + NV++ HIS+LR K+ + ++R GYS+ Sbjct: 181 W-EYNFDPQTNVIDVHISRLRSKIDKDFNPPLIHTERGAGYSM 222 >gi|315647351|ref|ZP_07900464.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] gi|315277553|gb|EFU40882.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] Length = 230 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 40/225 (17%), Positives = 88/225 (39%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ + + + D+ ++ L + Sbjct: 4 ILVVDDEPNIREVLASYLLKEHYLTLEAANGSEALGYMRKQAVDLVILDLML--PDMEGE 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + IR S VP++ ++ + + + F +G DD + KP RE++AR+ A+ RR Sbjct: 62 RVCQEIRTFSSVPIMMLTAKVTQSSRIGGFAAGADDYIVKPFDPREVMARIKAVLRRGDD 121 Query: 122 SN-----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 S G + + S + G+V L E ++L L + ++ ++ Sbjct: 122 SKLLADVIVYHQGRLVINSLKHEVTCDGQVINLTPSEYKLLLLLAKYPQRNFSREELVDR 181 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 + G D + +++ HI LR+K+ + + GY Sbjct: 182 VLGC-DFIGDIRIIDQHIKNLRQKIEPDSRQPQYIITVYGFGYRF 225 >gi|295097784|emb|CBK86874.1| heavy metal response regulator [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 226 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 39/224 (17%), Positives = 100/224 (44%), Gaps = 6/224 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G ++ ++ L +A D+ ++ L Sbjct: 3 ILIVEDEIKTGEYLSKGLTEAGFVVDHADNGLTGYHLAMTAEYDLVILDIML--PDVNGW 60 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118 ++ R++R A +P++ ++ +++ + + G DD + KP E+LARV Sbjct: 61 DIIRMLRTAGKGMPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGN 120 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++ ++ + + V R G L +E +LE+ + ++G+ + ++ I S ++ Sbjct: 121 TLITESQFKVADLSVDLVSRKVSRAGNRIVLTSKEFSLLEFFIRHQGEVLPRSLIASQVW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + + + N ++ + +LR K+ N G + + R +GY ++ Sbjct: 181 DM-NFDSDTNAIDVAVKRLRAKIDNDYGTKLIQTVRGVGYMLEV 223 >gi|170782838|ref|YP_001711172.1| putative two-component system response regulator [Clavibacter michiganensis subsp. sepedonicus] gi|169157408|emb|CAQ02597.1| putative two-component system response regulator [Clavibacter michiganensis subsp. sepedonicus] Length = 252 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 46/223 (20%), Positives = 88/223 (39%), Gaps = 11/223 (4%) Query: 5 IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64 ++D V + G +E + + D+ ++ L G LE+ Sbjct: 2 VEDDPTVNEVVCRYLKASGFQVETVADGLEAVRVATERMPDLVVLDRML--PGLDGLEVC 59 Query: 65 RIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118 R IRAH S VP++ ++ + ++ D+G DD + KP RE + V Sbjct: 60 RRIRAHHPESPVPVVMLTALGQGEDRVNGLDAGADDYLAKPFSPRELVLRVRAVLRRTVP 119 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 V GP + R+ G + L RE +L +L+ N + + + +++ Sbjct: 120 EAVPEPPFVAGPFVLDLGAREIHQAGVMLSLTSREFDLLAFLLRNPRRVFGRDDLLRSVW 179 Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 G E + + V H+ +LR+K+ + + + +GY Sbjct: 180 GW--EIGDLSTVTVHVRRLREKIEADPAHPVLLGTVWGVGYRF 220 >gi|254245751|ref|ZP_04939072.1| Response regulator receiver [Burkholderia cenocepacia PC184] gi|124870527|gb|EAY62243.1| Response regulator receiver [Burkholderia cenocepacia PC184] Length = 235 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 45/226 (19%), Positives = 84/226 (37%), Gaps = 8/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++++D + + G + E + L S D+ ++ L G G Sbjct: 7 ILVVEDEPAISELISVNLQHAGHCPIRAYNAEQAQNLISDVLPDLVLLDWMLPGKSGIAF 66 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 R +P+I ++ Q + + G DD V KP +E++AR+ A+ RR Sbjct: 67 ARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRRRA 126 Query: 121 VSNNRAETG------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + L E R+L + M + + ++TQ+ Sbjct: 127 PQLTEDVVSINGLRLDPATHRVAAHGDGSEIKLDLGPTEFRLLHFFMTHPERVHSRTQLL 186 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G VEE V+ HI +LR L+ +++ R GY + Sbjct: 187 DQVWGDH-VFVEERTVDVHIKRLRAALKPAGCDAMIETVRGSGYRL 231 >gi|312868964|ref|ZP_07729144.1| response regulator receiver domain protein [Lactobacillus oris PB013-T2-3] gi|311095528|gb|EFQ53792.1| response regulator receiver domain protein [Lactobacillus oris PB013-T2-3] Length = 229 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 40/227 (17%), Positives = 84/227 (37%), Gaps = 9/227 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + ++G + ++ D++ + L+ + Sbjct: 3 ILVVDDDKEIVQLLEIYIRNEGYEPLSAYDGKEALTKLNTN-PDINLVILDLMMPEMDGM 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILA------RVAAI 115 E+ + +R S +P++ +S + + SG DD V KP + E++A R Sbjct: 62 EVIKQVRKDSDIPILVLSAKTADMDKIQGLISGADDYVTKPFNPLEVMARVKSLLRRTQG 121 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + I ++G+V L E IL L ++ + + IF Sbjct: 122 EVTNDQPDVLNVGPLIINKDSHEVKTIKGDVIQLTALEFGILYLLASHPNRVFSADDIFE 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 ++ + V V H+S LR K+ G + + +GY ++ Sbjct: 182 RVW-QQESVVSAKTVMVHVSHLRDKIEEATNGEKVIQTVWGVGYKVE 227 >gi|225575437|ref|ZP_03784047.1| hypothetical protein RUMHYD_03527 [Blautia hydrogenotrophica DSM 10507] gi|225037382|gb|EEG47628.1| hypothetical protein RUMHYD_03527 [Blautia hydrogenotrophica DSM 10507] Length = 226 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 42/223 (18%), Positives = 86/223 (38%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ +D + + S++ E + D ++ L Sbjct: 3 ILIAEDEKDLNVLLKKRLENQKYSVDACCDGEEALDYLAVTEYDAVVLDIM--MPKINGL 60 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ + IR + P++ ++ S++ + D G DD + KP E+LAR+ + R+ Sbjct: 61 QVLQKIRKEGTSTPVLLLTAKDSIEDRVTGLDLGADDYLVKPFAFEELLARIRVMLRKSA 120 Query: 121 VSNNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 I + L +E IL Y+ N+G +++ +I I Sbjct: 121 AVETNTNVVKIANLTVDLNTHRVFRDETEIELSNKEFSILRYMCMNKGVVLSRDKIEEHI 180 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + +D A NVV+ +I LR+K+ + + + R GY + Sbjct: 181 W-NYDYAGASNVVDVYIRYLRRKIDDSYEPKLIHTIRGAGYVL 222 >gi|262045124|ref|ZP_06018153.1| transcriptional activator protein Irlr [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259037516|gb|EEW38758.1| transcriptional activator protein Irlr [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 232 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 36/224 (16%), Positives = 98/224 (43%), Gaps = 6/224 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G ++ ++ L ++ D+ ++ L Sbjct: 8 ILIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTSDYDLLILDVML--PDVNGW 65 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118 ++ R++RA + +P++ ++ +++ + + G DD + KP E+LARV Sbjct: 66 DIVRMLRAAGKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 125 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + ++ + + V R L +E +LE+ + ++G+ + ++ I S ++ Sbjct: 126 AVIVESQFQAADLSVDLVSRKVTRGATRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 185 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + + + N ++ + +LR K+ N + + R +GY ++ Sbjct: 186 DM-NFDSDTNAIDVAVKRLRAKIDNDFEPKLIQTVRGVGYMLEV 228 >gi|210617979|ref|ZP_03291838.1| hypothetical protein CLONEX_04070 [Clostridium nexile DSM 1787] gi|210149053|gb|EEA80062.1| hypothetical protein CLONEX_04070 [Clostridium nexile DSM 1787] Length = 225 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 38/223 (17%), Positives = 88/223 (39%), Gaps = 6/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + ++ +G + + + D++ I ++ Sbjct: 6 ILVVDDESRMRKLVKDFLEREGHIIIEAADGMEAMDIFYENK-DIALIILDVMMPRMDGW 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV--NKPIHHREILARVAAIYRRL 119 ++ R +RA SQVP+I ++ + L F+ GVD+ + R Sbjct: 65 QVCREVRALSQVPIIMLTARGEERDELQGFELGVDEYISKPFSPKILVARVNAILKRGRA 124 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S + + G I + ++ L +E +L Y + N+ +++ +I + ++ Sbjct: 125 AASEDLIDAGVIVIDKAAHLVKIDDVPIDLSVKEFELLTYFVENQKMALSREKILNNVWD 184 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D + +++H+ KLR KL K + + +GY + Sbjct: 185 -YDYFGDARTIDTHVKKLRSKLGEKGN--YIKTIWGMGYKFEV 224 >gi|148378962|ref|YP_001253503.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 3502] gi|153932237|ref|YP_001383344.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|153936363|ref|YP_001386892.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|148288446|emb|CAL82523.1| two-component response regulator [Clostridium botulinum A str. ATCC 3502] gi|152928281|gb|ABS33781.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|152932277|gb|ABS37776.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] Length = 240 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 43/227 (18%), Positives = 90/227 (39%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 ++IDD + + +G + +LE + D+ ++ L + Sbjct: 11 ILIIDDEEDIVRLIRTVLKKEGFQNIYYATNLEDGFKEFNKVEPDIIILDIML--PDGEG 68 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI------HHREILARVAA 114 EL + IRA S+VP++ +S + F G DD + KP + + R + Sbjct: 69 YELCKTIRAKSKVPILFLSAKGEEIDKILGFAIGGDDYITKPFSTKELAYRVKAHLRRYS 128 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N GP + + + E+ L +E ++ + + + ++K +I Sbjct: 129 YVENANEEKNILSFGPFELNISKAEFKKDREIIELKPKELALITFFAKHPNQIISKEKIC 188 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++G D +N + HI +LR+K+ + + + + LGY + Sbjct: 189 DNVWGE-DYYGFDNTIMVHIRRLREKIEKEPSRPEYLINVKGLGYKL 234 >gi|21325738|dbj|BAC00359.1| Two-component system, response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Corynebacterium glutamicum ATCC 13032] Length = 252 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 46/224 (20%), Positives = 83/224 (37%), Gaps = 10/224 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + G ++ DV ++ L LE Sbjct: 28 LVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGL--PELDGLE 85 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR S ++ ++ S + G DD + KP RE++ RV A+ RR + S Sbjct: 86 VCRRIRTFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRRPRTS 145 Query: 123 NNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + V L R E +L L G+ + + + + Sbjct: 146 TTPPQVTTPLIVGDLILDPVAHQVWVGETTVELTRTEFELLVALALRPGQVLTRHDLITE 205 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYS 219 ++ +E +V+ HI LR+KL G +D+ R +GY Sbjct: 206 VWDTT-WVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGYR 248 >gi|86605728|ref|YP_474491.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab] gi|86554270|gb|ABC99228.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab] Length = 249 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 44/225 (19%), Positives = 88/225 (39%), Gaps = 8/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ + G + L +A + + L+ G L Sbjct: 26 LLVVDDEDAIRETVAVALEEQGYQVLQAADGRQALELVHTAE-RLDLMILDLMLPGLNGL 84 Query: 62 ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIY 116 +L R++ R + +P++ ++ S + + G DD + KP R + + Sbjct: 85 DLCRLLRREGNTIPILMLTAKSSETDRVVGLELGADDYLTKPFGMRELIARCRSVLRRRQ 144 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + G I +F+ V+G +E R+LE M+N + + Q+ Sbjct: 145 QSHASEATVLRYGDICMFTQECRVLVRGVEVSFSPKEFRLLELFMSNPRRVWTREQLLER 204 Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 I+G D + V+ HI LR+KL + + + + R GY Sbjct: 205 IWG-SDFMGDSKTVDVHIRWLREKLELDPSNPEYLVTVRGFGYRF 248 >gi|302521034|ref|ZP_07273376.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. SPB78] gi|302429929|gb|EFL01745.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. SPB78] Length = 264 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 46/230 (20%), Positives = 93/230 (40%), Gaps = 19/230 (8%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 + ++D ++++ G + + D++ ++ + G + Sbjct: 40 LFVEDDDVIREATQLALERVGFRVTAVPDGLQGLESFRAGAPDIALLDVMV--PGMDGVS 97 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121 L R IR S VP+I +S + ++G DD V KP ++AR+ A+ RR Sbjct: 98 LCRRIRDESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDVSVLVARLRAVMRRFGHA 157 Query: 122 -----------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + G + V ++G + GE L E R+L A G +++ Sbjct: 158 GGGARQAVEEEAAGPLRFGDLEVDTEGMEVRRGGERIALTPTEMRLLLEFSAAPGTVLSR 217 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ ++ + + VV+ H+ +LR K+ G D +++ R GY + Sbjct: 218 DRLLERVWD-YGWGGDTRVVDVHVQRLRAKI----GQDRIETVRGFGYKL 262 >gi|283834149|ref|ZP_06353890.1| transcriptional activator protein Irlr [Citrobacter youngae ATCC 29220] gi|291070299|gb|EFE08408.1| transcriptional activator protein Irlr [Citrobacter youngae ATCC 29220] Length = 227 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 37/224 (16%), Positives = 99/224 (44%), Gaps = 6/224 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G ++ ++ L ++ D+ ++ L Sbjct: 3 ILIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTSDYDLLILDIML--PDVNGW 60 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118 ++ R++R A+ +P++ ++ +++ + + G DD + KP E+LARV Sbjct: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + ++ + + V R G L +E +LE+ + ++G+ + ++ I S ++ Sbjct: 121 AVIVESQFQAADLMVDLVSRKVTRSGARITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + + + N ++ + +LR K+ N + + R +GY ++ Sbjct: 181 DM-NFDSDTNAIDVAVKRLRAKIDNDFEPKLIQTVRGVGYMLEV 223 >gi|259648971|dbj|BAI41133.1| putative two-component response regulator [Lactobacillus rhamnosus GG] Length = 266 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 42/230 (18%), Positives = 81/230 (35%), Gaps = 14/230 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + +G L + + DV ++ L K Sbjct: 37 ILLVEDNREFSELLKLYLQGEGYILTRVFDGKIAMDTIKNNTFDVVLLDIMLPEK--NGF 94 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + +R P+I I+ Q + G DD + KP + AR+ A RR Sbjct: 95 NVLKELRQTKMTPVIIITARDMDQDEVLGLSLGADDYLKKPFSLVALNARIKAQIRRTTQ 154 Query: 122 SNNRAETGPIRV----------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + + L +E R+L+ LM + G +K Sbjct: 155 YAVYGYEKMHTQSQVTFADLRLDNLNQTVYKNDRRLNLTVKEYRLLKLLMIHPGHVFSKQ 214 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 I+ ++G +EN V I +LR K+++ + + + +GY ++ Sbjct: 215 AIYEKVWGES-YIGDENTVNVCIKRLRDKIQD-VNQRYIRTVWGIGYVLE 262 >gi|167768425|ref|ZP_02440478.1| hypothetical protein CLOSS21_02984 [Clostridium sp. SS2/1] gi|317499213|ref|ZP_07957488.1| response regulator receiver domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] gi|167709949|gb|EDS20528.1| hypothetical protein CLOSS21_02984 [Clostridium sp. SS2/1] gi|291560400|emb|CBL39200.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [butyrate-producing bacterium SSC/2] gi|316893527|gb|EFV15734.1| response regulator receiver domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 229 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 39/226 (17%), Positives = 83/226 (36%), Gaps = 11/226 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + + +E + D+ ++ L G E Sbjct: 5 LIVEDELSIAELEKDYLELSSFEVEIETDGQQGLEKALKNDFDMIILDIML--PGVDGFE 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + IR ++P++ +S + G DD + KP E++ARV A R + Sbjct: 63 ICKQIREAKEIPILMVSARKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHLNRYQRL 122 Query: 123 NNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 N + R + GE +E +L +L + + K ++F+ Sbjct: 123 VNNQMEVNDIIEIRGLKIDKTARRVYLNGEEKVFTTKEFDLLTFLAGHPNRVFTKEELFN 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 I+ + + + V HI K+R+K+ +++ +GY Sbjct: 183 KIWDM-ESLGDIATVTVHIKKIREKIEVNTAKPQYIETIWGVGYRF 227 >gi|319442731|ref|ZP_07991887.1| two-component system response regulator TcsR5 [Corynebacterium variabile DSM 44702] Length = 231 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 43/230 (18%), Positives = 81/230 (35%), Gaps = 11/230 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V+D +G + E + L D+ ++ L L Sbjct: 3 ILVVDDDRSVRDTLRQSLTFNGYDVVQATDGEEAQTLIGKENPDLVIMDGIL--PKVDGL 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSG-VDDVVNKPI-------HHREILARVA 113 E+ R +R L+ + S DD + KP R + R Sbjct: 61 EILRSLRGSGSEVLVLMLSQKSDVADRVAGLDAGADDYLTKPFALEELLARVRSLYRRSR 120 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + + + + R+ L R E +LE L+ N K +++ I Sbjct: 121 RTAAAVAKDSKPLSFLDLTLNPETREVTRDERRISLTRTEFALLELLLRNARKVLSRNTI 180 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 ++G +D N +E +I LR+K + + + R +GY + N Sbjct: 181 LEEVWG-YDFPTSGNALEVYIGYLRRKTEAEGEDRLIHTVRGVGYVLREN 229 >gi|206891181|ref|YP_002249203.1| DNA-binding response regulator [Thermodesulfovibrio yellowstonii DSM 11347] gi|206743119|gb|ACI22176.1| DNA-binding response regulator [Thermodesulfovibrio yellowstonii DSM 11347] Length = 227 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 50/223 (22%), Positives = 100/223 (44%), Gaps = 6/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + I G + D+ ++ L + Sbjct: 5 ILVVEDEPKLANLLIDYLKASGFEAFWLDDGARVIQWTKENCPDLIILDVML--PNKDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR+ S +P+I ++ + + G DD + KP RE++ARV AI+RR+ Sbjct: 63 EICREIRSFSTIPIIMVTARIEEVDRIVGLELGADDYICKPFSPRELIARVKAIFRRMNF 122 Query: 122 SNNRAETGP--IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +++A + P + + + G+ L E R+L+ L++N G+ ++Q+ +Y Sbjct: 123 KDDKAISFPSGFYLDENSLKAFLNGQELHLTTVEFRLLKILISNPGRVFTRSQLMDIMY- 181 Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + V + ++SHI KLRKK++ + + S GY + Sbjct: 182 PDNRIVSDRTIDSHIKKLRKKIKEISPEKEVIYSVYGAGYKFE 224 >gi|83717997|ref|YP_439386.1| response regulator [Burkholderia thailandensis E264] gi|257142507|ref|ZP_05590769.1| response regulator [Burkholderia thailandensis E264] gi|83651822|gb|ABC35886.1| response regulator [Burkholderia thailandensis E264] Length = 229 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 45/222 (20%), Positives = 92/222 (41%), Gaps = 8/222 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++I+D A + G ++ + L ++ D ++ L G L Sbjct: 4 LVIEDDAGIAANLYDYLESAGYEVDAAANGPAGLQLAATQPWDAILLDLSL--PGMDGLT 61 Query: 63 LPRIIRA--HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L R +R P++ ++ +L L F G DD + KP +E+ AR+ A+ +R + Sbjct: 62 LCRKLREEIRRDTPVLMLTARDTLDDKLAGFVHGADDYLVKPFSLKEVAARLGALIKRYR 121 Query: 121 VSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 +A +R+ E G +P + +L LM + + ++ + I+ Sbjct: 122 GQVTQAALCRADVRLDLQTLTVERAGRAVKMPPKCLHLLRILMQTPNRVIGHAELEAEIW 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G D + + + +H+ LR+ L + D +++ LGY + Sbjct: 182 G--DALPDSDTLRAHVYTLRRALTAQGEPDLIETVHGLGYRL 221 >gi|94310689|ref|YP_583899.1| two component heavy metal response transcriptional regulator [Cupriavidus metallidurans CH34] gi|93354541|gb|ABF08630.1| DNA-binding response regulator in two-component regulatory system with AgrS [Cupriavidus metallidurans CH34] Length = 224 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 40/221 (18%), Positives = 87/221 (39%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + + ++ ++ D+ ++ L G Sbjct: 3 ILVIEDEPKTGEYLRKGLTESSFVVDLASTGRDGLHHAIDGDYDLVILDVML--PGMNGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI-LARVAAIYRRLK 120 E+ + +R H P++ ++ ++ + + G DD + KP E+ + R Sbjct: 61 EVLKELREHKDTPVLFLTARDEVEDRVKGLELGGDDYLAKPFAFVELLARARTLLRRGPT 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 R E + + G L RE +L +L G+ +++TQI S ++ + Sbjct: 121 REAERIEIEDLEIDLLRHRVSRGGIRIDLSPREFALLHFLARRHGEVLSRTQIASHVWDM 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + NVV+ I +LR K+ + + S R +GY ++ Sbjct: 181 -NFDSDTNVVDVAIRRLRAKMDDTYAPKLIHSVRGIGYVLE 220 >gi|312127220|ref|YP_003992094.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor hydrothermalis 108] gi|311777239|gb|ADQ06725.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor hydrothermalis 108] Length = 234 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 44/223 (19%), Positives = 86/223 (38%), Gaps = 7/223 (3%) Query: 4 LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63 ++DD + + G +++ F + E + D+ ++ L E+ Sbjct: 8 VVDDEKDILELVSEYLTQKGYAVKTFENGEGFLEEFEKSEPDIVILDIML--PDIDGYEI 65 Query: 64 PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH----HREILARVAAIYRRL 119 + IR +S VP+I +S + + G DD ++KP I + + + Sbjct: 66 CKRIRKNSDVPIIMLSAKGEELDKVLGLELGSDDYISKPFSLSELEARIKKILRRVNKGP 125 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +N E I+V R+ G L +E L+ K + ++ I I+G Sbjct: 126 TKQDNVIEMFGIKVDFSQRNVFYNGTHIELSPKEFETFALLLKESTKVLKRSYILERIWG 185 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +E +V+ I +LRKK+ + + LGY ++ Sbjct: 186 DPALY-DERMVDDVIKRLRKKILQYSLPVEIKTMWGLGYKLEE 227 >gi|300856126|ref|YP_003781110.1| putative two-component response regulator [Clostridium ljungdahlii DSM 13528] gi|300436241|gb|ADK16008.1| predicted two-component response regulator [Clostridium ljungdahlii DSM 13528] Length = 230 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 42/226 (18%), Positives = 92/226 (40%), Gaps = 8/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD + +G ++ E + + ++ + + Sbjct: 5 ILIADDNIEIIKILKPYIEKEGFTVIFALDGEEALLKFNHYNPQLILLDIMMPL--MDGI 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ IR S P+I I+ + +SG DD + KP E++AR+ A+ RR+ Sbjct: 63 EVCNKIREKSNTPIIMITAKSEDADKILGLNSGADDYIVKPFSPGEVVARIKAVLRRITF 122 Query: 122 SNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + D +++G+ L ++E +L L ++ K V++ + I Sbjct: 123 PESNKMSLIKYESLELDIDNYSVKLKGKNINLTKKEIEVLWMLSSSPNKIVSRDDLLDNI 182 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSIDW 222 +G+ D + V++HI ++R KL ++ + + +GY + Sbjct: 183 WGV-DYFGDPRTVDTHIKRIRSKLHLNGQYNWDIKTIWAIGYKFEV 227 >gi|284043027|ref|YP_003393367.1| two component transcriptional regulator [Conexibacter woesei DSM 14684] gi|283947248|gb|ADB49992.1| two component transcriptional regulator, winged helix family [Conexibacter woesei DSM 14684] Length = 223 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 42/221 (19%), Positives = 87/221 (39%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V+ DG + + + D ++ + G + Sbjct: 3 ILVVDDEPAVRTALERALRLDGYEVALAADGQEALDALAGVAPDAVVLDLLMPQVG--GV 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +RA P++ ++ + + D+G DD + KP E+ AR+ A+ RR Sbjct: 61 EVCRRLRAAGDRTPVLMLTARDRIADRVSGLDAGADDYLVKPFALEELSARLRALLRRAG 120 Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + + L R E +LE L+ + + + ++ IF ++G Sbjct: 121 ADEHDRLRFGDLVLDQAAHEVRRGEREIELTRTEFLLLELLLRHPRQVLPRSVIFEHVWG 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D N +E ++ LR+K + + R +GY + Sbjct: 181 -YDFGSTSNSLEVYVGYLRRKTEAGDEPRLIHTVRGVGYVL 220 >gi|253578483|ref|ZP_04855755.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251850801|gb|EES78759.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 222 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 51/223 (22%), Positives = 98/223 (43%), Gaps = 5/223 (2%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEK 59 M L++D +++ I G +GF + + ++ L G Sbjct: 1 MIYLVEDDESIRELVIYTLKSQGFEAKGFERPSHFWKALEKEKPALLLLDVMLPEEDGIS 60 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +L+ R+ ++P+I ++ S T+ DSG DD + KP E+++R+ A+ RR Sbjct: 61 ILKKLRMRPDTRKLPIIMLTAKSSEYDTVVGLDSGADDYIPKPFRMMELISRIRALLRRT 120 Query: 120 KVSNNRAETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + R V + L +E +L L+ N G +++TQ+ + ++ Sbjct: 121 EDDGAEEYRTGNLYVCPSRHIATVDKKNVNLTLKEYEVLCLLLKNSGTVLSRTQLLNQVW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 G ++ E V+ HI LR+KL + + V++ R +GY I+ Sbjct: 181 G-YEFDGESRTVDVHIRTLRQKLGSAG--ELVETVRGVGYKIN 220 >gi|237731448|ref|ZP_04561929.1| DNA-binding response regulator [Citrobacter sp. 30_2] gi|226906987|gb|EEH92905.1| DNA-binding response regulator [Citrobacter sp. 30_2] Length = 240 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 88/228 (38%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 L++D + + D+G + D ++ L G L Sbjct: 7 IFLVEDDSDIASLLQLSLKDEGYEIVHEADGARALEQLEKHVWDAVILDLML--PGVDGL 64 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVA 113 E+ R IR S P+I IS S + + G DD + KP E++ R Sbjct: 65 EICRRIRQMSFYLPVIIISARTSETHRVLGLEMGADDYLAKPFSVLELMARVKALFRRQE 124 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 A+ + L++ + + R+ + G+ L RE +L + + G+ ++ + Sbjct: 125 AMSQNLRMEAGIITVHGVEIDPLAREVRLHGKSLDLTPREFDLLYFFARHPGEVFSRQAL 184 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++G + E+ V SHI++LR K+ + + + + GY + Sbjct: 185 LDQVWG-YQHEGYEHTVNSHINRLRTKIEKDAAEPEIILTVWGRGYKL 231 >gi|113972138|ref|YP_735931.1| osmolarity response regulator [Shewanella sp. MR-4] gi|114049386|ref|YP_739936.1| osmolarity response regulator [Shewanella sp. MR-7] gi|113886822|gb|ABI40874.1| two component transcriptional regulator, winged helix family [Shewanella sp. MR-4] gi|113890828|gb|ABI44879.1| two component transcriptional regulator, winged helix family [Shewanella sp. MR-7] Length = 241 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 37/229 (16%), Positives = 86/229 (37%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ + G + + E + L + ++ L GE L Sbjct: 8 ILVVDDDMRLRALLERYLMEQGYQVRSAANAEQMDRLLERENFHLIVLDLML--PGEDGL 65 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112 + R +R S +P++ ++ + + G DD + KP + RE + +V Sbjct: 66 SICRRLRQQGSTIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQV 125 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + G + R+ E L E +L+ L+ + + +++ + Sbjct: 126 QDVPGAPAQQEAEITFGEFSLDLATREMYHGDEAITLTSGEFAVLKVLVTHPREPLSRDK 185 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + + G D + E ++ +S+LR+ + + + + LGY Sbjct: 186 LMNLARGR-DYSALERSIDVQVSRLRRLIEKDPANPRYIQTVWGLGYVF 233 >gi|304405488|ref|ZP_07387147.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] gi|304345527|gb|EFM11362.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] Length = 228 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 51/222 (22%), Positives = 95/222 (42%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L+DD + ++G + L V ++ G Sbjct: 9 ILLVDDEPHILQFLELGLANEGFDVRTAPDGMTAINLAQEFVPHVIVLDVM--MPGMDGF 66 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119 E R+I+ S+V +I ++ + + G DD + KP E+LAR+ A + Sbjct: 67 ETCRMIKKGGSEVAVIMLTAKDEVDDRVKGLTLGADDYLVKPFSFDELLARIRARLRNQF 126 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + G + ++ + +G+ L E +L+Y++AN G ++K+ I ++G Sbjct: 127 PMLFGEVKLGRFSIDDRRKEIQYEGQALELSPTEYELLKYMVANHGIVLSKSTILDKVWG 186 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +D EEN+VE ++ LR KL +K + + R GY ID Sbjct: 187 -YDFGGEENIVEVYVRSLRDKLGDK-EHRLIRTLRGAGYRID 226 >gi|290352143|dbj|BAI78782.1| putative two-component response regulator [Streptococcus pyogenes] Length = 228 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 46/224 (20%), Positives = 89/224 (39%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + +G + + D+ ++ L Sbjct: 5 ILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLML--PEMDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R ++ ++ ++ S+ + D G DD + KP E+L R+ AI+RR + Sbjct: 63 EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLDRIRAIFRRQDI 122 Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + R + L +RE +L LM N + + + ++ S Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +DEAVE NVV+ +I LR K+ + + R +GY I Sbjct: 183 VW-KYDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225 >gi|257067981|ref|YP_003154236.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Brachybacterium faecium DSM 4810] gi|256558799|gb|ACU84646.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Brachybacterium faecium DSM 4810] Length = 239 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 51/225 (22%), Positives = 95/225 (42%), Gaps = 10/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++D G + ++ + + D+ ++ L Sbjct: 13 LLVVDDEPNIRDLLATSLRFAGFEVFTASTGNEAIREATENQPDLVVLDVML--PDMDGF 70 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R +R + P++ ++ Q + G DD V KP E++AR+ A+ RR Sbjct: 71 TVTRRLRDRGEKYPILFLTAKDETQDKVAGLTVGGDDYVTKPFSLEEVVARIRAVLRRTH 130 Query: 121 VSNNRAETG-----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 +R+ D + L E ++L YLM N G+ V+KTQI Sbjct: 131 GGAETTVDSALVVADLRLDEDSHEVHRGDVNIELSPTEFKLLRYLMLNAGRVVSKTQILD 190 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +D + E +VES+IS LR+K+ + +KR +GY + Sbjct: 191 HVWD-YDWSGEVGIVESYISYLRRKIDVIGEP-MIHTKRGIGYVL 233 >gi|228952982|ref|ZP_04115044.1| Uncharacterized sensory transduction protein ykoG [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228806703|gb|EEM53260.1| Uncharacterized sensory transduction protein ykoG [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 224 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 50/223 (22%), Positives = 93/223 (41%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + D +G ++ D+ ++ L G L Sbjct: 4 ILIIEDEESLADFLELELKYEGYKVDIQLDGRKGLSEALEKNYDLILLDLML--PGLNGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +RA P+I ++ S+ + DSG DD + KP E+LAR+ I+RR + Sbjct: 62 EVCRRLRATKNTPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARMRVIFRREEH 121 Query: 122 SNNRAETGPIRVF----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 N+ + + R E L +E +L M N + + + + + Sbjct: 122 IENKQVSFLTFKDLQLQIESRTITKGDEEIELTNKEFELLLMFMKNINRVLTRDVLLDQV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G +D VE N+V+ ++ LR KL + + + + R GY + Sbjct: 182 WG-YDAIVETNIVDVYVRYLRNKLHSVDKEEYIQTVRGAGYIM 223 >gi|224543644|ref|ZP_03684183.1| hypothetical protein CATMIT_02854 [Catenibacterium mitsuokai DSM 15897] gi|224523417|gb|EEF92522.1| hypothetical protein CATMIT_02854 [Catenibacterium mitsuokai DSM 15897] Length = 225 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 48/220 (21%), Positives = 92/220 (41%), Gaps = 5/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +I+D +++ G + FN+ D++ + L + Sbjct: 5 IYVIEDDENIQEIIKLSLESSGYQITLFNNAIDAIVAIHEDTPDLAIFDVML--PELDGI 62 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + IR + P++ +S + DSG DD + KP E+ ARV ++ RR + Sbjct: 63 SAIKQIRKTNTTLPILILSAKDREIDKVRGLDSGCDDYMTKPFGVLELAARVRSLLRRSQ 122 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + +T + + QGE L +E ++L YL+ N+ + V + ++ + I+G Sbjct: 123 HHSKVIKTTSLEIDKSKHIILKQGEKLELTHKEYQLLLYLVENKERVVEREELLNNIWG- 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D E ++ HI LR KL + + + R +GY Sbjct: 182 YDFVGESRALDVHIRSLRAKLGDDGHH-YIKTIRSVGYRF 220 >gi|190350980|gb|ACE75886.1| CovR [Streptococcus pyogenes] Length = 228 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 46/224 (20%), Positives = 89/224 (39%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + +G + + D+ ++ L Sbjct: 5 ILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLML--PEMDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R ++ ++ ++ S+ + D G DD + KP E+L R+ AI+RR + Sbjct: 63 EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLVRIRAIFRRQDI 122 Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + R + L +RE +L LM N + + + ++ S Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +DEAVE NVV+ +I LR K+ + + R +GY I Sbjct: 183 VW-KYDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225 >gi|187928801|ref|YP_001899288.1| winged helix family two component heavy metal response transcriptional regulator [Ralstonia pickettii 12J] gi|241114328|ref|YP_002973803.1| two component heavy metal response transcriptional regulator, winged helix family [Ralstonia pickettii 12D] gi|187725691|gb|ACD26856.1| two component heavy metal response transcriptional regulator, winged helix family [Ralstonia pickettii 12J] gi|240868901|gb|ACS66559.1| two component heavy metal response transcriptional regulator, winged helix family [Ralstonia pickettii 12D] Length = 228 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 45/223 (20%), Positives = 98/223 (43%), Gaps = 6/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G ++ + L S D+ ++ L Sbjct: 3 LLVVEDEPKTGEYLQQGLTEAGFVVDLARNGTDGRHLAMSGDYDLLLLDVML--PDVDGW 60 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118 ++ + +RA VP++ ++ S+ + + G DD + KP E+LARV Sbjct: 61 QIVQSLRAAEQAVPVLFLTARDSVADRVKGLEMGADDYLVKPFAFAELLARVRTLLRRGT 120 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 VS++R + + + R G+ PL +E +LE L+ RG+ + ++ I S ++ Sbjct: 121 GAVSSDRIQVADLVLDLARRRASRGGQKIPLTSKEFSLLELLVRRRGEVLPRSLIASQVW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + + NV++ I +LR K+ + + + R +GY ++ Sbjct: 181 DM-NFDSDTNVIDVAIRRLRAKIDDHFEPKLIQTVRGMGYVLE 222 >gi|260889615|ref|ZP_05900878.1| DNA-binding heavy metal response regulator CopR [Leptotrichia hofstadii F0254] gi|260861026|gb|EEX75526.1| DNA-binding heavy metal response regulator CopR [Leptotrichia hofstadii F0254] Length = 235 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 54/228 (23%), Positives = 100/228 (43%), Gaps = 9/228 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++ D + S++ + SA DV ++ L Sbjct: 10 ILIVEDERMINDIIARTLRKENYSVDSCFDGQEALDYIFSAEYDVLILDIML--PKLDGF 67 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ + IR P++ ++ S+Q + D G DD + KP E+LAR+ I R+ Sbjct: 68 EVLKRIRNKGIQTPVLFLTARESVQDRVKGLDYGADDYLVKPFDFEELLARIRVILRKNS 127 Query: 121 VSN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + N + + V + + L +E ILEY++ N+ + ++K +I Sbjct: 128 IKSDSVGNIFKIANLTVDCNEHTVFRDEKRIKLSPKEFSILEYMIRNKKRVISKDKIEQH 187 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI-DWN 223 IY FD + NV+E HI LRKK+ + + R +GY + + N Sbjct: 188 IYD-FDSEINSNVIEVHIRLLRKKIDTDFTPKLIHTIRGVGYVLKEEN 234 >gi|257061994|ref|YP_003139882.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8802] gi|256592160|gb|ACV03047.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8802] Length = 224 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 44/221 (19%), Positives = 90/221 (40%), Gaps = 6/221 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L++D + + +++ E L + D+ ++ L + Sbjct: 4 LLVEDDPRIATVLADSLKEQRYTVDVAEDGEKGWQLIEAFPYDLILLDVML--PKLDGIS 61 Query: 63 LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120 L + +R +P++ ++ + + + D G DD V KP E+ AR+ A + R Sbjct: 62 LCQRLRKSGYAIPVLMLTAKDTSEDKVMGLDVGADDYVVKPFDLPELSARIRALLRRGNT 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 S+ + + + + L +E +LE + N ++++ I ++ Sbjct: 122 SSSPILAWNQLSLNPNTYQVTYGEKPLHLTPKEYSLLELFLRNPHLVLSRSMILDHLWSF 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 D E V+ HI +LRKKLRN D +++ LGY + Sbjct: 182 ED-PPSEEAVKVHIKELRKKLRNVGSLPDFIETVYGLGYRL 221 >gi|163759095|ref|ZP_02166181.1| putative two-component response regulator transcriptional regulatory protein [Hoeflea phototrophica DFL-43] gi|162283499|gb|EDQ33784.1| putative two-component response regulator transcriptional regulatory protein [Hoeflea phototrophica DFL-43] Length = 241 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 46/222 (20%), Positives = 91/222 (40%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D F + G++++ + + +L S D ++ L L Sbjct: 19 ILIIEDDLETAAYLSRAFREAGITVDHASDGDSGFFLASENTYDALVVDRML--PKRDGL 76 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118 + +R + P + +S + + +G DD + KP E+ + + Sbjct: 77 SIISELRRNGDDTPALILSALGQVDDRVTGLRAGGDDYLTKPYAFSELLARIEILGRRKG 136 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + G + + + G+ PL RE R+LEYLM N G+ V +T + ++ Sbjct: 137 ARDQETTYRVGDLELDRLSHEVRRAGQPIPLQPREYRLLEYLMKNAGQVVTRTMLLEHVW 196 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + NV++ HIS+LR K+ G + + R GY + Sbjct: 197 D-YHFDPQTNVIDVHISRLRSKIEKDFGEPLLKTVRGAGYMM 237 >gi|315646885|ref|ZP_07900000.1| two-component response regulator [Paenibacillus vortex V453] gi|315277815|gb|EFU41139.1| two-component response regulator [Paenibacillus vortex V453] Length = 235 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 45/226 (19%), Positives = 98/226 (43%), Gaps = 11/226 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A + + +G+ + + E + ++ ++ L + Sbjct: 8 LIVDDEADIVRLLQTVLVKEGIDQVYTAATAEAAWDEFQRCQPEIVILDIML--PDGEGY 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IRA S VP+ +S + F G DD + KP +E+ R+ A +RR Sbjct: 66 EVCKKIRAVSNVPIFFLSAKAEEIDKILGFAIGGDDYITKPFSPKEVAYRIKARFRRADP 125 Query: 122 SNNRAETG------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + P + + + + G+V PL +E +L L+ + G+ ++K ++ Sbjct: 126 VQLEDKANRLIKVGPFELDEEKVELKKNGKVIPLKPKELGLLTLLLKHPGQIISKESLYD 185 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 ++G + +N V H+ +LR+K+ + + + + LGY + Sbjct: 186 QVWGE-EFFGFDNTVMVHVRRLREKIEDDPSAPRYLLTVKGLGYKL 230 >gi|310641862|ref|YP_003946620.1| response regulators consisting of a chey-like receiver domain protein and a winged-helix DNA-binding domain protein [Paenibacillus polymyxa SC2] gi|309246812|gb|ADO56379.1| Response regulators consisting of a CheY-like receiver domain protein and a winged-helix DNA-binding domain protein [Paenibacillus polymyxa SC2] Length = 233 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 42/229 (18%), Positives = 81/229 (35%), Gaps = 11/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L+DD + ++G L + + DV ++ + Sbjct: 6 ILLVDDEPEIIKLMQIYLENEGYRLLMARDGLEALEQVNREQIDVMVLDVM--MPNMDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARVAA 114 E IR P+I +S + G DD V KP + L RV Sbjct: 64 EACMKIRETEHFPIIMLSAKGQDMDKITGLSVGADDYVTKPFSPLELVARIKSQLRRVRK 123 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 V + + + + + + GE L RE I+E L +RG+ ++ QI+ Sbjct: 124 YTHSSSVLEHEMVLDELSINTVTHEVTLAGESVKLTPREFAIVELLARHRGQVLSMEQIY 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 ++ N + H+ K+R+K+ + + + +GY ++ Sbjct: 184 EKVWKEQYLE-SNNTLMVHVRKIREKIETDPRKPKYLKTVWGIGYKMEK 231 >gi|311280552|ref|YP_003942783.1| two component heavy metal response transcriptional regulator, winged helix family [Enterobacter cloacae SCF1] gi|308749747|gb|ADO49499.1| two component heavy metal response transcriptional regulator, winged helix family [Enterobacter cloacae SCF1] Length = 227 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 38/224 (16%), Positives = 99/224 (44%), Gaps = 6/224 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G ++ ++ L +A D+ ++ L Sbjct: 3 ILIVEDEVKTGEYLSKGLTEAGFVVDLADNGLTGYHLAMTADYDLIVLDIML--PDVNGW 60 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118 ++ R++R A+ +P++ ++ +++ + + G DD + KP E+LARV Sbjct: 61 DIVRMLRTANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + ++ + + + R G L +E +LE+ + +RG+ + ++ I S ++ Sbjct: 121 AVIPESQFQVADLTLDLVSRKVSRGGARITLTSKEFTLLEFFIRHRGEVLPRSLIASQVW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + + + N ++ + +LR K+ N + + R +GY ++ Sbjct: 181 DM-NFDSDTNAIDVAVKRLRAKIDNDFEPKLIQTVRGVGYVLEV 223 >gi|172039329|ref|YP_001805830.1| two-component response regulator [Cyanothece sp. ATCC 51142] gi|171700783|gb|ACB53764.1| two-component response regulator [Cyanothece sp. ATCC 51142] Length = 248 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 43/227 (18%), Positives = 88/227 (38%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + F + +E + L D++ ++ L E Sbjct: 21 ILIVDDDPAICQLISRFFSYNNYYIESAVDAKTARQLFQKFNPDLAILDVNL--PDESGF 78 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAA 114 L + IR + ++ ++ L+ F+ G DD + KP + + R Sbjct: 79 NLCKEIRQTGTL-VLMLTCMTDTSHVLEGFEQGADDYLTKPFNLEILKAKIAALLKRRNG 137 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 L NN + + + + + EV PL E +L +L + + ++ + Sbjct: 138 GEVNLNTPNNSVSIEGLTIDPNRCEVSLNHEVLPLTSLEFELLYFLATHPNRVWERSDLI 197 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +A++G E E V+ HI ++RKK+ + G + + R GY + Sbjct: 198 AAVWGNHHEIGAERKVDVHIGQIRKKINDIQG-KLIKTVRGKGYLFE 243 >gi|206970138|ref|ZP_03231091.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|206734715|gb|EDZ51884.1| DNA-binding response regulator [Bacillus cereus AH1134] Length = 223 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 43/226 (19%), Positives = 85/226 (37%), Gaps = 12/226 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +++ +G + + DV ++ L Sbjct: 3 ILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALERWNEG-PDVLILDVML--PDTDGY 59 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAI 115 EL R+ R +P++ ++ + L G DD V KP ++ R Sbjct: 60 ELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRIKNMARRVK 119 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 VS+ E G I V R V G+ L RE + + ++N + + ++ Sbjct: 120 KAEAAVSHEVIEAGEIVVCPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 179 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G F+ V+ + +LRKKL + + + +GY +D Sbjct: 180 KVWG-FEYIGNTRAVDIMVQRLRKKLGTSG--EYIKTIYGVGYKLD 222 >gi|118464519|ref|YP_882587.1| TcrA protein [Mycobacterium avium 104] gi|118165806|gb|ABK66703.1| TcrA protein [Mycobacterium avium 104] Length = 222 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 47/220 (21%), Positives = 91/220 (41%), Gaps = 5/220 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L++D + +G + + + DV ++ L G E Sbjct: 4 LLVEDEPRLAATVARGLKAEGFVVVTVGNGVDGLAEATENPFDVVILDIML--PGRSGYE 61 Query: 63 LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120 + R +R+++ P++ ++ D FD G DD + KP R ++AR+ A + R Sbjct: 62 VLRRMRSNNVWTPVLMLTAKDGEYDETDAFDLGADDYLTKPFSFRVLVARLRALVRRGAP 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 G + + + L RE +LE+LM N+ V K I + ++ Sbjct: 122 ERPVVLTAGSLSLDPARHTVQRGSTPIALTPREYGVLEFLMRNKDVVVTKADILANVWDA 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + NVVE ++ LR+K+ G + +++ R +GY + Sbjct: 182 HHHGPD-NVVEVYVGYLRRKIDVPFGTNTIETIRGVGYRL 220 >gi|290352241|dbj|BAI78831.1| putative two-component response regulator [Streptococcus pyogenes] Length = 228 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 48/224 (21%), Positives = 91/224 (40%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + +G + + D+ ++ L Sbjct: 5 ILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLML--PEMDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R ++ ++ ++ S+ + D GVDD + KP E+LAR+ AI+RR + Sbjct: 63 EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGVDDYIVKPFAIEELLARIRAIFRRQDI 122 Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + R + L +RE +L LM N + + + ++ S Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +DEAVE NVV+ +I LR K+ + + R +GY I Sbjct: 183 VW-KYDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225 >gi|229050930|ref|ZP_04194480.1| DNA-binding response regulator [Bacillus cereus AH676] gi|228722388|gb|EEL73783.1| DNA-binding response regulator [Bacillus cereus AH676] Length = 224 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 42/226 (18%), Positives = 85/226 (37%), Gaps = 12/226 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +++ +G + + DV ++ L Sbjct: 4 ILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALERWNEG-PDVLILDVML--PDTDGY 60 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAI 115 EL R+ R +P++ ++ + L G DD V KP ++ R Sbjct: 61 ELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRVK 120 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 VS+ E G I + R V G+ L RE + + ++N + + ++ Sbjct: 121 KTEAAVSHEVIEAGEIVICPKKRKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 180 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G F+ V+ + +LRKKL + + + +GY +D Sbjct: 181 KVWG-FEYIGNTRAVDIMVQRLRKKLGTSG--EYIKTIYGVGYKLD 223 >gi|261406712|ref|YP_003242953.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261283175|gb|ACX65146.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] Length = 228 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 42/225 (18%), Positives = 82/225 (36%), Gaps = 10/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + +D ++ E + ++ G+ Sbjct: 7 ILVVDDDQSIVELLRDFLENDSFHVKTACDAEEAWAIFQQHPIQCMVLDIM--MPGQNGF 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYR 117 EL R IRA S VP++ +S + G DD + K EI+ARV Sbjct: 65 ELCRRIRAESPVPILFLSARSDDVDKIRGLTLGGDDYIVKTASPAEIVARVKAVLRRSAT 124 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 R + + G +R+ R+ V G L +E +L + Q+ + Sbjct: 125 RRPMEERVLDYGRLRLNLSTREVVVDGNNVVLTPKEFELLRVFAEHPRHVFTYDQLLAKF 184 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221 + D + + + H+S+LR+K+ + + +GY + Sbjct: 185 W---DGVGDRHTIRVHLSRLREKIEADPNQPQFLVNVWGVGYRFE 226 >gi|168179635|ref|ZP_02614299.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|182669357|gb|EDT81333.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] Length = 229 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 49/227 (21%), Positives = 89/227 (39%), Gaps = 9/227 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + F D G S+ ++ D+ I ++ Sbjct: 5 ILIVDDEDDIVSFMKDYFEDQGYSVITASNGREAIEYCDK---DIDIILLDIMMPNIDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + IR P+I +S S + G DD + KP +E+ ARV A RR K Sbjct: 62 QVCQNIRDKVSCPIIFLSARQSEVDKIKGLGVGGDDYIVKPFSIKELKARVQAHLRREKR 121 Query: 122 SNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + R + + L +E I+E L + + +K QI+ I Sbjct: 122 VPLNNRSKISFGKLTLDLNSRKVHYEEDEIILTAKEFDIVELLALHPEQVFSKEQIYEKI 181 Query: 178 YGLFDEAVEENVVESHISKLRKK-LRNKLGFDPVDSKRFLGYSIDWN 223 +G +D + N V HI K+R K ++ + + + +GY + N Sbjct: 182 WG-YDAEGDANTVAEHIKKIRAKFIKRNASLNHIATVWGVGYRWEIN 227 >gi|311033146|ref|ZP_07711236.1| two-component response regulator; MrsR2 protein [Bacillus sp. m3-13] Length = 236 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 40/231 (17%), Positives = 90/231 (38%), Gaps = 15/231 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +++DD + +G + ++ + ++ ++ L + Sbjct: 6 ILIVDDEKDLCTLIKTALIKEGFSEIRIAGTVNQGWNEFNDFHPNIVILDVML--PDGEG 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +L + IR S+VP++ +S + G DD ++KP +E+ RV A RR Sbjct: 64 YDLCKKIREISRVPVLFLSAKTEEVDKILGLAIGGDDYISKPFSPKEVAFRVKAQLRRAG 123 Query: 121 V----------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + G + + + G++ L +E ++ M N ++K Sbjct: 124 YSTVGASTSNKNEKVISVGSFSINHEETEVMKDGKMLELTAKEVGLMACFMRNPNHIISK 183 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 +F+ ++G + +N + HI +LR+K+ + + + + LGY Sbjct: 184 ETLFNKVWGE-EFYGADNTLTVHIRRLREKIEDTPSKPTYIITVKGLGYRF 233 >gi|319760961|ref|YP_004124898.1| heavy metal response regulator [Alicycliphilus denitrificans BC] gi|317115522|gb|ADU98010.1| heavy metal response regulator [Alicycliphilus denitrificans BC] Length = 228 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 43/225 (19%), Positives = 98/225 (43%), Gaps = 8/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A + D ++G ++ + + S D+ ++ L G Sbjct: 3 LLIVEDEAKLADYLRKGLSEEGYVIDVAVNGIDGLHMASDGHYDLIVLDTML--PGIDGF 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L +R + Q P+I ++ ++ + +G DD + KP E++AR+ + RR Sbjct: 61 GLLAALRQNKQTPVIMLTARHRIEDRVRGLKTGADDYLVKPFAFSELVARIEVLLRRAAG 120 Query: 122 SNNRA-----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + G ++V R G+ L +E ++L L+ +G+ +++T+I Sbjct: 121 TAPAPDALVLCLGDLQVDLARRRATRAGQRIDLSAKEFQLLTLLLRRKGEVLSRTEIAEQ 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ + + NV++ + +LR KL + + R +GY ++ Sbjct: 181 VWDV-NFDHGTNVIDVAVRRLRSKLDLPFERPLLHTVRGMGYVLE 224 >gi|217969842|ref|YP_002355076.1| two component transcriptional regulator, winged helix family [Thauera sp. MZ1T] gi|217507169|gb|ACK54180.1| two component transcriptional regulator, winged helix family [Thauera sp. MZ1T] Length = 230 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 52/221 (23%), Positives = 99/221 (44%), Gaps = 6/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L +D ++ DG G +++ + + D+ ++ L + Sbjct: 3 ILLAEDDPVIADGICRALRRGGCAVDHVADGMEADAALAGQGYDLLILDLGL--PRMNGI 60 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ + +RA S P++ ++ + + D+G DD + KP E+ ARV A+ RR Sbjct: 61 EVLKRLRARKSAQPVLILTAQDGVDDRVRGLDAGADDYLTKPFALPELEARVRALTRRGT 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 E G + R ++ G++ L RE +LE + G+ V+K Q+ + G Sbjct: 121 GQPRCIEIGQLSYDQADRVVKIGGQLVELSAREIGLLEIFLLRVGRLVSKDQLVDHLCG- 179 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + E V N +E ++ +LRKKL + + + R LGY ++ Sbjct: 180 WGEEVSSNAIEVYVHRLRKKLEDSG--VRIVTVRGLGYCLE 218 >gi|167748370|ref|ZP_02420497.1| hypothetical protein ANACAC_03114 [Anaerostipes caccae DSM 14662] gi|317472095|ref|ZP_07931427.1| response regulator receiver domain-containing protein [Anaerostipes sp. 3_2_56FAA] gi|167652362|gb|EDR96491.1| hypothetical protein ANACAC_03114 [Anaerostipes caccae DSM 14662] gi|316900499|gb|EFV22481.1| response regulator receiver domain-containing protein [Anaerostipes sp. 3_2_56FAA] Length = 229 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 40/226 (17%), Positives = 86/226 (38%), Gaps = 11/226 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + + +E E L + D+ ++ L G E Sbjct: 5 LIVEDELAIAELEKDYLELSSFEVEIETDGEKGLKLGLTEDFDMIILDIML--PGVDGFE 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + IR +P++ +S + G DD + KP E++ARV A R + Sbjct: 63 ICKQIREKKDIPILMVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHLERYRRL 122 Query: 123 NNRAETGPI-------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + ++ R + GE +E +L +L ++ + K ++F+ Sbjct: 123 VSSNTQENDVVEIRGLKIDKTARRVYLNGEEKAFTTKEFDLLTFLASHPNRVFTKEELFN 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 I+ + + + V HI K+R+K+ +++ +GY Sbjct: 183 KIWDM-ESLGDIATVTVHIKKIREKIELNTAKPQYIETIWGVGYRF 227 >gi|163815933|ref|ZP_02207303.1| hypothetical protein COPEUT_02113 [Coprococcus eutactus ATCC 27759] gi|158448743|gb|EDP25738.1| hypothetical protein COPEUT_02113 [Coprococcus eutactus ATCC 27759] Length = 228 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 47/225 (20%), Positives = 94/225 (41%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++ G G +E S + + D+ ++ L + L Sbjct: 4 ILVVEDDVIICGGVKLFLEKRGYEVETAYSCKEADGCL-EHGFDLILLDRNL--PDGRGL 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116 + R +R ++VP+I ++ + ++ F +G DD + KP + R + Sbjct: 61 DYCRELRKSTKVPIIFLTARDTEADMIEGFRAGCDDYIAKPFSVELLYQRIEAVLRRSEN 120 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 V R G + V + + E L E RILE L+ N+G+ + + I Sbjct: 121 APDGVKRERFHYGDMSVDFERMQVYISDEPIKLSVTEYRILELLIKNKGRVLTRDMIIQK 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 I+ + V+EN + HI +LR+K+ + + V + +GY+ Sbjct: 181 IWDDNENYVDENTLNVHIRRLRQKIEKDAGNPEYVITVFGIGYTF 225 >gi|71066478|ref|YP_265205.1| two component transcriptional regulator [Psychrobacter arcticus 273-4] gi|71039463|gb|AAZ19771.1| two component transcriptional regulator, winged helix family [Psychrobacter arcticus 273-4] Length = 234 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 37/223 (16%), Positives = 89/223 (39%), Gaps = 5/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK--GEK 59 ++++D A +++ + G + R + ++ L G G Sbjct: 6 ILIVEDEAAIREMVVMTLEMAGFDSLQAADVSEAHQQVVDHRPALILLDWMLPGDKSGID 65 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYR 117 + + S++P+I ++ + + D+G DD + KP RE+++R+ A Sbjct: 66 FCRMLKNDALLSEIPVIMLTAKSEEDSKVHGLDAGADDYMTKPFSTRELISRIKAVLRRS 125 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + G + + + + V + + E R+L + M++ + + Q+ + Sbjct: 126 SALSGDKPINIGKLTLDAKSQRFMVGDNIIDMGPTEYRLLAFFMSHPERAYTRAQLLDQV 185 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G + +E+ ++ H+ +LR LR + + R GY Sbjct: 186 WG-GNVYIEDRTIDVHVKRLRTLLRPYDCDTLIQTVRGTGYRF 227 >gi|15894117|ref|NP_347466.1| response regulator [Clostridium acetobutylicum ATCC 824] gi|15023722|gb|AAK78806.1|AE007599_2 Response regulator [Clostridium acetobutylicum ATCC 824] gi|325508244|gb|ADZ19880.1| Response regulator [Clostridium acetobutylicum EA 2018] Length = 229 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 45/229 (19%), Positives = 86/229 (37%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + ++G + + ++ + + ++ L + Sbjct: 4 ILVVDDDIEILNLVSIYLSNEGYEIIKATNGCEAISKINNEKPKLVILDVML--PDIDGI 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR VP+I +S + +G DD + KP + E + RV + RR + Sbjct: 62 EVCRKIREKLNVPIIILSAKVQNSDKIKGLLTGADDYITKPFNQLEFIVRVKTLLRRTYL 121 Query: 122 SNNRAETGPIRVF--------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + R + + L E IL+ L N+G+ + +I Sbjct: 122 FDTRGNKDDLDDIVLGTLTIKKSTHTVLINNNEIILTATEFEILKLLAINKGRIFSAEEI 181 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221 F ++ N V HIS LR K+ K G + + +GY I+ Sbjct: 182 FETVWKEK-YFQSNNTVMVHISNLRDKIERKLNGEKLIHTVWGVGYKIE 229 >gi|322516470|ref|ZP_08069390.1| DNA-binding response regulator [Streptococcus vestibularis ATCC 49124] gi|322125016|gb|EFX96425.1| DNA-binding response regulator [Streptococcus vestibularis ATCC 49124] Length = 217 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 45/220 (20%), Positives = 91/220 (41%), Gaps = 7/220 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D L+++G + G + L D+ ++ L L Sbjct: 3 ILIVEDEVLIREGMSDYLMECGHEVFETGDGHEALDLFYREMPDLVLLDIQLPI--LNGL 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IR S VP++ ++ + L F D + +L + Sbjct: 61 EVLKTIRKTSSVPVLMLTAFHDEDYKLTAFGELADGY-LEKPFSLSLLRVRIEAIFKKLQ 119 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + G +RV + + G+ + +E ILEYL+ + GK ++QI A++ Sbjct: 120 PSRVFTYGDVRVDFESYTASLAGQAISMNAKELEILEYLLQHEGKARTRSQILDAVWKET 179 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +E + V++ +I +LRKKL D + + R +GY ++ Sbjct: 180 EEIPFDRVIDVYIKELRKKLEL----DCIVTVRNVGYKLE 215 >gi|209974323|gb|ACJ04041.1| CsrR [Streptococcus pyogenes serotype M3] Length = 228 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 46/224 (20%), Positives = 90/224 (40%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + +G + + D+ ++ L Sbjct: 5 ILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLML--PEMDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R ++ ++ ++ S+ + D G DD + +P E+LAR+ AI+RR + Sbjct: 63 EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVRPFAIEELLARIRAIFRRQDI 122 Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + R + L +RE +L LM N + + + ++ S Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +DEAVE NVV+ +I LR K+ + + R +GY I Sbjct: 183 VW-KYDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225 >gi|251798749|ref|YP_003013480.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] gi|247546375|gb|ACT03394.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. JDR-2] Length = 230 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 51/225 (22%), Positives = 94/225 (41%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +G + ++ L +A D+ ++ Sbjct: 5 IMVVDDDEKITSLLRRSLAFEGYEVSTASNGMEGLRLLLTADPDMLILDVM--MPQVDGW 62 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +R S VP++ ++ + + D+G DD + KP E+LARV A+ RR Sbjct: 63 EVCRRVREGGSTVPILMLTAKDDISDRVKGLDAGADDYLIKPFALEELLARVRALLRRKS 122 Query: 121 VSNNRAETGPIRVFS-----DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + + I D R+ G L +E +L M N + + + I Sbjct: 123 DKIDESSSNKIVFDDLALDLDSREAIRSGRRIELTAKEYDLLLLFMQNPRRVLTRDAIME 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I+G +D + E NV+E +I+ LR+KL + + R GY + Sbjct: 183 KIWG-YDFSGESNVLEVYIAMLRQKLEEGGAKRIIQTVRGTGYVL 226 >gi|110598537|ref|ZP_01386806.1| Response regulator receiver:Transcriptional regulatory protein-like [Chlorobium ferrooxidans DSM 13031] gi|110339841|gb|EAT58347.1| Response regulator receiver:Transcriptional regulatory protein-like [Chlorobium ferrooxidans DSM 13031] Length = 230 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 94/228 (41%), Gaps = 12/228 (5%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 M ++++D + G ++ E D+ ++ L G Sbjct: 5 MLLVVEDDPHLAQLLGYNLERAGFKCHVSSTGEDALLQLVRKSFDLVLLDVML--PGIDG 62 Query: 61 LELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 E+ R IR + P+I ++ + F+ G+DD V KP RE++ R+ AI++ Sbjct: 63 FEVCRQIRQNQLFRDLPIIMLTAKGEEIDRILGFELGIDDYVVKPFSPRELILRIRAIFK 122 Query: 118 RLKVSNNRAETGPI----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 R + R V ++G L E ++L L+ +G+ ++ ++ Sbjct: 123 RDRRHGGRVPEQLRAGTLDVDLVRHLVTLEGRELLLTLMEFKLLAALLKRKGEAQSREKL 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 S ++ + D ++ +++HI++LR+KL + + R GY + Sbjct: 183 LSDVWDV-DRSINTRTIDTHITRLREKLGETG--RMIKTVRGFGYKFE 227 >gi|293395322|ref|ZP_06639606.1| two component response regulator IrlR [Serratia odorifera DSM 4582] gi|291422006|gb|EFE95251.1| two component response regulator IrlR [Serratia odorifera DSM 4582] Length = 225 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 41/221 (18%), Positives = 89/221 (40%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D D + G ++ + + D ++ L G Sbjct: 5 ILVVEDDTSTGDYLKKGLEEAGYRVDLARNGTDGLFRALEHGYDAIVLDVML--PGLDGW 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ ++R S VP++ ++ +Q + + G DD + KP E++ R+ + RR V Sbjct: 63 QIIEVLRKKSDVPILFLTARDGVQDRIHGLELGADDYLIKPFSFTELVLRLRTLLRRGTV 122 Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + R Q + L +E +L L+ G+ +++T I S ++ + Sbjct: 123 READHYAIADLHIDVLRRKVVRQEQTITLTNKEFMLLHLLVRREGEVLSRTMIASQVWDM 182 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + NVV+ I +LR K+ + + R +GY + Sbjct: 183 -NFDSDTNVVDVAIKRLRAKIDRPFAVKLIHTVRGIGYVCE 222 >gi|146291368|ref|YP_001181792.1| DNA-binding transcriptional activator CusR [Shewanella putrefaciens CN-32] gi|145563058|gb|ABP73993.1| two component heavy metal response transcriptional regulator, winged helix family [Shewanella putrefaciens CN-32] Length = 226 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 37/224 (16%), Positives = 98/224 (43%), Gaps = 6/224 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G ++ ++ L +A D+ ++ L Sbjct: 3 ILIVEDEIKTGEYLSKGLREAGFVVDHADNGLTGYHLAMTAEYDLVILDIML--PDVNGW 60 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118 ++ R++R A +P++ ++ +++ + + G DD + KP E+LARV Sbjct: 61 DIIRMLRTAGKGMPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVKTLLRRGN 120 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++ ++ + + R G L +E +LE+ + ++G+ + ++ I S ++ Sbjct: 121 TMITESQFRVAGLSIDLVSRKVSRAGNRIVLTSKEFSLLEFFIRHQGEVLPRSLIASQVW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + + + N ++ + +LR K+ N + + R +GY ++ Sbjct: 181 DM-NFDSDTNAIDVAVKRLRAKIDNDYETKLIQTVRGVGYMLEV 223 >gi|311280253|ref|YP_003942484.1| two component transcriptional regulator, winged helix family [Enterobacter cloacae SCF1] gi|308749448|gb|ADO49200.1| two component transcriptional regulator, winged helix family [Enterobacter cloacae SCF1] Length = 240 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 42/228 (18%), Positives = 89/228 (39%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + D+G + L D ++ L L Sbjct: 7 ILLVEDDRDIATLLRLNLQDEGYKIVHEADGARALALLDKQVWDAVILDLML--PHVDGL 64 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARVA 113 E+ R IR ++ P+I IS S + + G DD + KP + + R Sbjct: 65 EICRRIRQMARYLPVIIISARTSETHRVLGLEMGADDYLPKPFSVLELIARVKALFRRQE 124 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 A+ + +++ + + R+ ++GE+ L RE +L + + G+ ++ + Sbjct: 125 AMGQNIRLEGGMISCHGLAIDPLAREVRLRGELVDLTPREFDLLYWFARHPGEVFSRLSL 184 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++G + E+ V +HI++LR K+ + + + + GY Sbjct: 185 LDNVWG-YQHEGYEHTVNTHINRLRTKIERDAAEPEVILTVWGKGYKF 231 >gi|293375797|ref|ZP_06622067.1| response regulator receiver domain protein [Turicibacter sanguinis PC909] gi|292645574|gb|EFF63614.1| response regulator receiver domain protein [Turicibacter sanguinis PC909] Length = 228 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 54/223 (24%), Positives = 92/223 (41%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D LV D A + + + + + D ++ L K Sbjct: 3 ILLIEDEVLVLDALKAYLEREQYRVFVATTGNEGLTIFEKEKIDFVILDLML--PDMKGE 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IRA S V L ++ SL+ + + G DD + KP RE++AR+ + RR+ Sbjct: 61 EICQQIRAISDVYLFMLTAKGSLEHRILGLNLGADDYLVKPFSPRELVARIKTVVRRMNG 120 Query: 122 SNNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 R +VQ E+ P E +L LM N+GK + + Q+ + I Sbjct: 121 PLQNINLYDDGYLLIDQSKRIVKVQEEIVPFTTTEFNLLVLLMDNKGKVLTREQLINQIL 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 G FD + ++ HI +RKK+ + + +GY Sbjct: 181 G-FDFNGYDRTIDVHIKNIRKKIEQDTKQPRYIVTVMKVGYKF 222 >gi|282882917|ref|ZP_06291522.1| transcriptional regulatory protein ResD [Peptoniphilus lacrimalis 315-B] gi|300813311|ref|ZP_07093666.1| response regulator receiver domain protein [Peptoniphilus sp. oral taxon 836 str. F0141] gi|281297328|gb|EFA89819.1| transcriptional regulatory protein ResD [Peptoniphilus lacrimalis 315-B] gi|300512582|gb|EFK39727.1| response regulator receiver domain protein [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 223 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 43/222 (19%), Positives = 90/222 (40%), Gaps = 7/222 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ +G + DV ++ Sbjct: 4 ILVVDDEKKIREVIKTYAEFEGHEVVEAVDGIDAIEKVKENDFDVIVMDIM--MPRLDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + I+ +P++ +S L F+ G+DD V KP +E++AR+ I R Sbjct: 62 SSYKEIKKIKDIPVLMLSARGEEYDKLFGFEIGIDDYVTKPFSPKELMARLNVIVNRNNK 121 Query: 122 SNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + N ++ GR V GE L +E +L +L+ N +++ + + ++G Sbjct: 122 TTNNDNLIFQGLKIDLGGRVVFVDGEKIDLTPKEYDLLVFLVKNENIALSRETLLNKVWG 181 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +D ++ V++HI LR +++ + + R +GY D Sbjct: 182 -YDFFGDDRTVDTHIKMLRNSIKDY--RKFIVTVRGVGYKFD 220 >gi|281179028|dbj|BAI55358.1| two-component response regulator [Escherichia coli SE15] Length = 239 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 50/219 (22%), Positives = 98/219 (44%), Gaps = 3/219 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D ++ F + G ++ + +L + ++ L G Sbjct: 19 ILLIEDNQRTQEWVTQGFSEAGYVIDAVSDGRDGLYLALKDDYALIILDIML--PGMDGW 76 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + +R Q P+I ++ S+ + DSG +D + KP E+LARV A R+ Sbjct: 77 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 136 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 N+ E +++ S + L R+E ++L L + G+ + +T I S I+G+ Sbjct: 137 LNSTLEISGLKMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 195 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + N V+ I +LR K+ + + + R +GYS Sbjct: 196 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 234 >gi|209520876|ref|ZP_03269617.1| two component transcriptional regulator, winged helix family [Burkholderia sp. H160] gi|295677130|ref|YP_003605654.1| two component transcriptional regulator PhoB, winged helix family [Burkholderia sp. CCGE1002] gi|209498683|gb|EDZ98797.1| two component transcriptional regulator, winged helix family [Burkholderia sp. H160] gi|295436973|gb|ADG16143.1| two component transcriptional regulator PhoB, winged helix family [Burkholderia sp. CCGE1002] Length = 233 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 47/226 (20%), Positives = 83/226 (36%), Gaps = 8/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++I+D + + G + E L S D+ ++ L G G Sbjct: 5 ILVIEDEPAISELISVNLQHAGHCPIRAYNAEQAHNLISDVLPDLVLLDWMLPGKSGISF 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 R +P+I ++ Q + + G DD V KP +E++AR+ A+ RR Sbjct: 65 ARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRRRA 124 Query: 121 VSNNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 E L E R+L + M + + ++TQ+ Sbjct: 125 PQLTEDVVAINGLKLDPATHRVAAHAEGSEIKLDLGPTEFRLLHFFMTHPERVHSRTQLL 184 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G VEE V+ HI +LR L+ +++ R GY + Sbjct: 185 DQVWGDH-VFVEERTVDVHIKRLRAALKPAGCDAMIETVRGSGYRL 229 >gi|145301166|ref|YP_001144007.1| two-component system blr regulon response regulator [Aeromonas salmonicida subsp. salmonicida A449] gi|142853938|gb|ABO92259.1| two-component system blr regulon response regulator [Aeromonas salmonicida subsp. salmonicida A449] Length = 224 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 50/222 (22%), Positives = 91/222 (40%), Gaps = 5/222 (2%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + L++D A + D I DG +E F + R D ++ L Sbjct: 5 VIWLVEDEASIADTLIYALQTDGFEVEWFPLGQPLLTRLEQTRPDFLILDVGL--PDISG 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL + +RA PL+ ++ L + G DD V KP RE+ + R Sbjct: 63 FELCKQVRARCDTPLMFLTARSEEIDRLIGLEIGADDYVAKPFSPREV-CARVRVILRRS 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + + + G+ L R E +L+ LM G+ ++ Q+ ++ Sbjct: 122 QPVATQPSQLLALDEERARISFHGQPLALTRYEYLLLKTLMQAPGRVYSRQQLMDLVWSG 181 Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 +E+++ V++HI +R KLR + + + R LGYS++ Sbjct: 182 AEESLD-RTVDTHIKTIRAKLRERDADANLILTHRGLGYSLE 222 >gi|119503823|ref|ZP_01625905.1| two-component response regulator PhoB [marine gamma proteobacterium HTCC2080] gi|119460331|gb|EAW41424.1| two-component response regulator PhoB [marine gamma proteobacterium HTCC2080] Length = 234 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 45/224 (20%), Positives = 93/224 (41%), Gaps = 6/224 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 +++DD ++D +G + + WL + D+ ++ L G G ++ Sbjct: 4 ILVVDDEPDLRDMLRFALETEGFEVLEAADTQKAYWLITDQDPDLVLLDWMLPGGSGIEL 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118 L + A +P+I ++ + + D G D + KP +E+ R + Sbjct: 64 LSRLKKEEATQSLPVIMVTAKAREEDIIQGLDMGAHDYITKPFSLKELLARIRTIFRHTE 123 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 N++ G + + D R + +V L E ++L++ M + + A+ QI I+ Sbjct: 124 DDDVNHQLRVGDLVLELDNRRVTLGSQVLMLGPTEFKLLQFFMLHPERAHARKQILQHIW 183 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG--FDPVDSKRFLGYSI 220 G + V+ V+ I +LRK L++ + + + R GY Sbjct: 184 GN-NACVDARTVDVSIRRLRKTLQSAHPVYSELIQTVRGTGYRF 226 >gi|262374891|ref|ZP_06068125.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter lwoffii SH145] gi|262309904|gb|EEY91033.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter lwoffii SH145] Length = 228 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 43/224 (19%), Positives = 92/224 (41%), Gaps = 7/224 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L++D + G + F+ + + + + ++ + L Sbjct: 5 MLVEDEIELAQLVRDYLEAAGFEVSMFHDGQEAYNSFTQRKPSLMILDLMV--PRMDGLT 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +R S +P+I ++ + + G DD + KP +E++ARV A+ RRL Sbjct: 63 ICRKVREQSDLPIIMVTARTEEIDRVLGLNMGADDYLCKPFSPKELVARVQAVLRRLDRK 122 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 + R+ + Q + L E R+LE + + G+ ++ Q+ I Sbjct: 123 SEPESNDLFRMDKSQQRIWYQQKALNLTPTEFRLLELFLEHVGQVYSRAQLLDHI-NPDS 181 Query: 183 EAVEENVVESHISKLRKKLRNKLG----FDPVDSKRFLGYSIDW 222 V + V++SHI LR+K+ + + + + +GY ++ Sbjct: 182 FDVADRVIDSHIKNLRRKISDAAETGNRHEWIQAVYGVGYRFEY 225 >gi|296141305|ref|YP_003648548.1| two component transcriptional regulator, winged helix family [Tsukamurella paurometabola DSM 20162] gi|296029439|gb|ADG80209.1| two component transcriptional regulator, winged helix family [Tsukamurella paurometabola DSM 20162] Length = 235 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 47/223 (21%), Positives = 89/223 (39%), Gaps = 9/223 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD +++ G + + DV ++ G L Sbjct: 13 LVVDDEQSIRELLQVSLKFQGFDVTVAQDGPSALDRVRTFHPDVMVLDIM--MPGMDGLG 70 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L + +R P + ++ S++ + G DD V KP E++AR+ + RR Sbjct: 71 LLKRLRQDGIDAPALFLTARDSVEDKVAGLTLGGDDYVTKPFSLEEVVARINVLLRRSGF 130 Query: 122 SNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 T + + GE+ L E +L Y M N G ++K +I + Sbjct: 131 GQKEEITRLKFADLELDDETHEVWKAGELVSLSPTEFTLLRYFMVNAGVVLSKPRILDHV 190 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + +D + NVVES++S LR+K+ + + + R +GY + Sbjct: 191 W-HYDFGGDVNVVESYVSYLRRKV-DTGEPRLIHTLRGVGYVL 231 >gi|224543110|ref|ZP_03683649.1| hypothetical protein CATMIT_02310 [Catenibacterium mitsuokai DSM 15897] gi|224523897|gb|EEF93002.1| hypothetical protein CATMIT_02310 [Catenibacterium mitsuokai DSM 15897] Length = 234 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 50/226 (22%), Positives = 92/226 (40%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +L+DD + D +G ++ ++ D+ ++ L Sbjct: 6 IMLVDDEPDILDLLDKALTIEGYCNITKIDNGLSAINTCKEINPDIIVLDVML--PDIDG 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ + IR S P++ +S + G DD V KP +EI RV A RR + Sbjct: 64 YEVCKKIREISHCPILFLSSKNDELDKILGLAVGGDDYVTKPFSPKEIAYRVKAQLRRAE 123 Query: 121 VSNNRAETGPI-----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 N + + + +DG + L RE IL+YL N G+ +++ +++ Sbjct: 124 YKYNPKQDFSVRIGELMIDADGCRVMKNNKEIELTAREFEILQYLAQNVGRVISRERLYE 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++G D +N + HI LR+KL + + + + LGY + Sbjct: 184 TVWGE-DSFGCDNTIMVHIRHLREKLEDNPTAPQYIITMKGLGYKL 228 >gi|126695485|ref|YP_001090371.1| two-component response regulator [Prochlorococcus marinus str. MIT 9301] gi|126542528|gb|ABO16770.1| two-component response regulator [Prochlorococcus marinus str. MIT 9301] Length = 260 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 42/229 (18%), Positives = 84/229 (36%), Gaps = 10/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 +LI+D ++D G ++ + L D+ ++ L G + Sbjct: 5 ILLIEDDRDMRDLVARHLEHSGFDVQKAEDGIKGQALALQYSPDLILLDLMLPSVDGLTL 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R S +P++ I+ L+ + F+SG DD + KP E+ R+ A+ RR Sbjct: 65 CQRLRRDERTSNIPILMITALGGLKDKVTGFNSGADDYITKPFDLEELHVRIKALLRRTN 124 Query: 121 VSNNRAETGPIRVFS-------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + + + + L E +L L+ G+ V+ I Sbjct: 125 RAQLNSSNQQEILNYGPLTLVPERFEAIWFESPVRLTHLEFELLHCLLQRHGQTVSPALI 184 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221 ++G ++ + + HI LR KL + + GY ++ Sbjct: 185 LKEVWG-YEPDDDIETIRVHIRHLRTKLEPDPRKPIYIKTVYGAGYCLE 232 >gi|123967682|ref|YP_001008540.1| two-component response regulator [Prochlorococcus marinus str. AS9601] gi|123197792|gb|ABM69433.1| two-component response regulator [Prochlorococcus marinus str. AS9601] Length = 260 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 42/229 (18%), Positives = 84/229 (36%), Gaps = 10/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 +LI+D ++D G ++ + L D+ ++ L G + Sbjct: 5 ILLIEDDRDMRDLVARHLEHSGFDVQKAEDGIKGQALALQYSPDLILLDLMLPSVDGLTL 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R S +P++ I+ L+ + F+SG DD + KP E+ R+ A+ RR Sbjct: 65 CQRLRRDERTSNIPILMITALGGLKDKVTGFNSGADDYITKPFDLEELHVRIKALLRRTN 124 Query: 121 VSNNRAETGPIRVFS-------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + + + + L E +L L+ G+ V+ I Sbjct: 125 RAQLNSSNQQEILNYGPLTLVPERFEAIWFESPVRLTHLEFELLHCLLQRHGQTVSPALI 184 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221 ++G ++ + + HI LR KL + + GY ++ Sbjct: 185 LKEVWG-YEPDDDIETIRVHIRHLRTKLEPDPRKPIYIKTVYGAGYCLE 232 >gi|294340410|emb|CAZ88791.1| Phosphate regulon transcriptional regulatory protein phoB [Thiomonas sp. 3As] Length = 244 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 47/227 (20%), Positives = 87/227 (38%), Gaps = 9/227 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D + + G S E + DV I+ L G + Sbjct: 7 ILIVEDEPAIAELLAMNLQHAGHCPIRAGSAEEALRVIRDVLPDVLLIDWMLPGMSGVAL 66 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 R +P+I ++ + D+G DD + KP +E+LAR+ A+ RR Sbjct: 67 ARALRTDARTKAIPIIMLTARSEEGDKVQGLDAGADDYITKPFSPKELLARIRAVLRRRA 126 Query: 121 VSNNRAETG-------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + P + + P + L E ++L YLMA+ + ++ + Sbjct: 127 PQLTAEQVQIGGLSVDPSSRRALFKKPGSEPLEIRLGPTEFKLLHYLMAHPERVHSRGAL 186 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G +EE V+ HI +LR+ L + V++ R GY Sbjct: 187 LDKVWGDH-VFIEERTVDVHIKRLREALSPVQCAEMVETVRGAGYRF 232 >gi|260437804|ref|ZP_05791620.1| DNA-binding response regulator ResD [Butyrivibrio crossotus DSM 2876] gi|292809828|gb|EFF69033.1| DNA-binding response regulator ResD [Butyrivibrio crossotus DSM 2876] Length = 229 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 41/227 (18%), Positives = 85/227 (37%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + ++ + E E + + ++ L G+ Sbjct: 4 ILIVEDEISIAELEKDYLELSDYEVDIASDGETGESMALKGDYVLCILDVML--PGKDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IR +P+I +S + G DD + KP E++ARV A R Sbjct: 62 EICKAIRKEKNIPIIMVSAKRDDIDKIRGLGLGADDYITKPFSPSELVARVKAHLARYDR 121 Query: 122 SNNRAETGPI-------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 ++ R V E +E +L +L +N K +K ++F Sbjct: 122 LVASTVPQNDVLEIRGLKIDKTARRVFVNNEEKVFTTKEFDLLLFLASNPNKVFSKDELF 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 I+ + + + V HI K+R+K+ + +++ +GY Sbjct: 182 RNIWDM-ESIGDIATVTVHIKKIREKIEYDTSKPQYIETIWGVGYRF 227 >gi|291301374|ref|YP_003512652.1| winged helix family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290570594|gb|ADD43559.1| two component transcriptional regulator, winged helix family [Stackebrandtia nassauensis DSM 44728] Length = 230 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 55/220 (25%), Positives = 89/220 (40%), Gaps = 10/220 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++ +D A + D DG + S R A++ L G+ +E Sbjct: 12 LIAEDDAAIADLVSMYLRRDGFGVRVETDGVGALTAIRSVRPVAVALDIGL--PGKDGIE 69 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L +RA P++ ++ L + G DD + KP RE+ ARV + RR Sbjct: 70 LCTELRAAGDWTPVLFMTARDDEVDRLLGLEIGADDYITKPFSPRELTARVRTVLRRASG 129 Query: 122 SNNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + G +R+ R L E +L LM N G+ A+ Q+ SA++ Sbjct: 130 GSAATEALTVGAVRLDPARRRVWAADAEVELTVTEFDLLASLMRNPGQVFAREQLLSAVW 189 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 G A V+ HI++LR KL + P+ + R +GY Sbjct: 190 GYTASAG-TRTVDVHIAQLRGKLGDHS---PIRTVRGVGY 225 >gi|298243491|ref|ZP_06967298.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297556545|gb|EFH90409.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 253 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 48/226 (21%), Positives = 93/226 (41%), Gaps = 11/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +G +E ++ + D+ ++ Sbjct: 29 ILVVDDDRFANTLVQFVLSKEGYEVETADNPRGALQMIQKREPDLLILDV--TMPYINGF 86 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E ++A +PLI ++ +++ L F+ G DD + KP +H+E++ARV A+ RR+K Sbjct: 87 EFSAKLKAEGYEIPLIFMTAQDTIEAKLQGFNIGADDYICKPYNHQELVARVQAVLRRIK 146 Query: 121 VSNNRAETGPIRVFSDGRDPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 S + E + L E +L LM + G+ V + Q+ + Sbjct: 147 KSGKTGNQSIRGGQIELFPAELKVAVTGKQPVTLTPTEMHVLRVLMHSAGQVVNRDQLLA 206 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220 ++ D N+V+ +I +LR KL + + S R +GY Sbjct: 207 EVWN--DNENNSNIVDVYIRRLRVKLEDDPDKPLYILSVRGVGYKF 250 >gi|257126795|ref|YP_003164909.1| two component transcriptional regulator, winged helix family [Leptotrichia buccalis C-1013-b] gi|257050734|gb|ACV39918.1| two component transcriptional regulator, winged helix family [Leptotrichia buccalis C-1013-b] Length = 226 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 95/224 (42%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + +G + + + D+ ++ L + Sbjct: 5 ILVIEDDPKISRLLEIELKFEGFDVFFAYDGKEGLNMAKYGSYDIILLDVML--PKMSGM 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IR SQVP+I ++ + + FD G DD + KP + E+LAR+ A+ RR K Sbjct: 63 EVCKRIRETSQVPIIMLTAKDEISDKVVGFDYGADDYMTKPFSNEELLARIKALLRRTKK 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF-----PLPRRERRILEYLMANRGKRVAKTQIFSA 176 S + + L +RE +L++L+ N+G +++ +I Sbjct: 123 SVVHKGIFEFEDLTINYSTYEVFRDYGKNLIQLSKREFELLDFLVLNKGIVLSRDKILEE 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G FD +N+++ +I LR K+ + + R +G+ Sbjct: 183 VWG-FDYIGNDNILDLYIKYLRDKIDRPYERKFIQTVRGIGFIF 225 >gi|116749438|ref|YP_846125.1| two component transcriptional regulator [Syntrophobacter fumaroxidans MPOB] gi|116698502|gb|ABK17690.1| two component transcriptional regulator, winged helix family [Syntrophobacter fumaroxidans MPOB] Length = 223 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 45/221 (20%), Positives = 95/221 (42%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D V ++G +++ E + D+ ++ L + Sbjct: 3 LLVVEDEKKVASFIRKGLEEEGYAVDVALDGEVGLQMAMDRVHDLIILDIQL--PRLSGM 60 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL R +RA P++ ++ +++ + D+G DD + KP RE++ARV A+ RR Sbjct: 61 ELLRSLRAKRISTPVLLLTVRATIEDKVLGLDAGADDYLTKPFSFRELVARVRALLRRRA 120 Query: 121 VSNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S+ E L +E +L+Y M N + + +T I ++ Sbjct: 121 ESSQTELRVADLTLDPVRHTVSRGSEKIELTAKEFALLDYFMRNPDRVLTRTMIAEHVWD 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D NV++ +++ LR+K+ + + + R +GY + Sbjct: 181 -YDFDSMTNVIDVYVNYLRRKIDSDREPKLIHTVRGVGYML 220 >gi|110635445|ref|YP_675653.1| two component transcriptional regulator [Mesorhizobium sp. BNC1] gi|110286429|gb|ABG64488.1| two component transcriptional regulator, winged helix family [Chelativorans sp. BNC1] Length = 229 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 42/225 (18%), Positives = 94/225 (41%), Gaps = 4/225 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D + +G +E + E D+ ++ + G ++ Sbjct: 6 IMVVEDDEPLCVLLRYNLEAEGYQVEVVTRGDEAEVRLQENVPDLLVLDWMVPAISGIEL 65 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118 ++ ++P+I ++ + +G DD + KP E +ARV A + Sbjct: 66 CRRLKMRPETERLPIIMLTARGEESDRVRGLSTGADDYLVKPFSTPEFIARVRALLRRAK 125 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 +V + + G I + + + L E R+LE++M + G+ +++Q+ ++ Sbjct: 126 PEVLSTVLKVGDIVLDREAHRVYRRKNEIHLGPTEFRLLEFMMQHPGRVFSRSQLLDNVW 185 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 G ++E V+ H+ +LRK + D + + R GY+I N Sbjct: 186 GETIY-IDERTVDVHVGRLRKAVNQGRMPDVIRTIRGAGYAIREN 229 >gi|288918433|ref|ZP_06412785.1| two component transcriptional regulator, winged helix family [Frankia sp. EUN1f] gi|288350196|gb|EFC84421.1| two component transcriptional regulator, winged helix family [Frankia sp. EUN1f] Length = 227 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 50/220 (22%), Positives = 95/220 (43%), Gaps = 5/220 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D ++G +++ W + DV ++ L E Sbjct: 4 LVVEDETRTAALLRRGLAEEGFAVDVVADGADAVWQATEITYDVIVLDLML--PSLDGFE 61 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R +RA + P++ +S ++ + D G DD + KP E+ AR+ A+ RR Sbjct: 62 VCRRLRAAGRWSPVLMLSARGAVTDRVRGLDVGADDYLPKPFSFDELSARIRALIRRGAH 121 Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 E +R+ GR G L +E +LEYLM + G+ + +T I ++ Sbjct: 122 ERPVVLEVDGLRLDPAGRTVSRDGVPLDLSPKEFALLEYLMRHPGEALRRTAILEHVWD- 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 F NVV+ +++ LR+K+ G +++ R GY + Sbjct: 181 FAYDGTSNVVDQYVAYLRRKIDKPFGTSQLETVRGAGYRL 220 >gi|255280412|ref|ZP_05344967.1| phosphate regulon response regulator PhoB [Bryantella formatexigens DSM 14469] gi|255268877|gb|EET62082.1| phosphate regulon response regulator PhoB [Bryantella formatexigens DSM 14469] Length = 223 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 48/224 (21%), Positives = 94/224 (41%), Gaps = 6/224 (2%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEK 59 + +++D +++ + G S+E F + S + D+ ++ L G + Sbjct: 3 LIYILEDDKNIREIESYSLKNSGYSVEEFEYAKPFWNKVSERKPDLVLLDIMLPDSDGVE 62 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYR 117 VL+ R +VP++ ++ S + D+G DD + KP E+++RV A Sbjct: 63 VLKKLRRNPETKKVPVVMVTAKSSEIDKVKGLDNGADDYITKPFGVMELISRVKAVLRRV 122 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 I + ++ R V L +E +L+ + N G +A+ I + Sbjct: 123 NQMEEEKLMRLHEIFMDNEKRMVYVSDVPCELTYKEFELLKLFLQNAGIVMARESIMERV 182 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +G+ D E ++ HI LR+KL + + R +GY I+ Sbjct: 183 WGV-DFEGESRTLDMHIKTLRQKLGVAG--KYIKTVRNVGYRIE 223 >gi|225572220|ref|ZP_03781084.1| hypothetical protein RUMHYD_00514 [Blautia hydrogenotrophica DSM 10507] gi|225040282|gb|EEG50528.1| hypothetical protein RUMHYD_00514 [Blautia hydrogenotrophica DSM 10507] Length = 224 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 40/220 (18%), Positives = 97/220 (44%), Gaps = 5/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D L+ +G + ++ +S+E + + ++ L Sbjct: 4 ILLVEDDLLLSEGISYALRKESYLVDCADSIEKAWECLNKG-PSLVLLDVNL--PDGDGR 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E + +R+ ++VP++ ++ S + L+ FD+G DD + KP + ++ + + + Sbjct: 61 EFLKRLRSANKVPVVFLTARDSEKDMLEGFDAGCDDYITKPFPISVLSRKIGLLLKGVAY 120 Query: 122 SNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + G ++ +Q L E R+LEY + NRG+ + + QI ++ Sbjct: 121 LDKSLYYQGDFVYDYAKKELTIQNVPVKLTATELRLLEYFLKNRGQVLTREQILENVWDS 180 Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219 ++ V+E + ++ +LR+K+ + + + +GY Sbjct: 181 YENFVDERTLNVNVRRLREKIEKDPKNPRYIVTMFGIGYK 220 >gi|323357907|ref|YP_004224303.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Microbacterium testaceum StLB037] gi|323274278|dbj|BAJ74423.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Microbacterium testaceum StLB037] Length = 244 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 50/223 (22%), Positives = 97/223 (43%), Gaps = 9/223 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD A + D ++G + + + D+ ++ G +E Sbjct: 23 LVVDDEANLSDLLRMALQNEGWDARTAANGQEALNVIREFGPDLLVLDIM--MPGLDGME 80 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L IRA P++ ++ +++ + +G DD V KP + E++ R+ + RR Sbjct: 81 LLTRIRAAGNDAPVLFLTAKDAVEDRIAGISAGADDYVTKPFNLEEVVVRLRGMARRHVA 140 Query: 122 SNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + A+ + + E G L +E +L YLM N + ++K QI + Sbjct: 141 AIADADPRLRVGDLSLDEESYEVERGGIPIKLTAKEFELLRYLMQNPRRVLSKAQILDQV 200 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + +D +VVE +IS LRKK+ + + + R +GY+I Sbjct: 201 WS-YDFGGNGSVVEIYISYLRKKIDSLGEP-LIHTVRGVGYTI 241 >gi|257066704|ref|YP_003152960.1| two component transcriptional regulator, winged helix family [Anaerococcus prevotii DSM 20548] gi|256798584|gb|ACV29239.1| two component transcriptional regulator, winged helix family [Anaerococcus prevotii DSM 20548] Length = 237 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 43/225 (19%), Positives = 85/225 (37%), Gaps = 10/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + D DG + + + + D+ ++ L Sbjct: 6 ILIVEDEKTISDIVKNYLIKDGYHVFQAFDGVKALEIFNEEQIDLVILDLMLPM--LSGE 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IR SQVP+I S + G DD V KP ++E++ RV A+ RR++ Sbjct: 64 EVLKDIRNKSQVPVIITSAKVEEFDRIQGLRLGADDYVTKPFSNKELVERVKAVLRRIEK 123 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEV------FPLPRRERRILEYLMANRGKRVAKTQIFS 175 N L + E I++ L ++ K + +I Sbjct: 124 YNIPRADIIKTNDGRLLMDLKYNRFLKDGREISLTKNEFSIVKTLFSSPNKIFTRDEIIE 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYS 219 +GL D + +++HI +R+K+ + + + +GY Sbjct: 184 LTFGL-DYDAYDRAIDTHIKNIRQKIEDNPKKPQYIKTIYGMGYK 227 >gi|187919209|ref|YP_001888240.1| two component winged helix family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187717647|gb|ACD18870.1| two component transcriptional regulator, winged helix family [Burkholderia phytofirmans PsJN] Length = 245 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 46/228 (20%), Positives = 89/228 (39%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + D+ + L D ++ L G L Sbjct: 7 ILIVEDDIDIANVLSLHLRDERYEVVHSADGNEGLRLLEQGGWDALILDLML--PGVDGL 64 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARVA 113 E+ R RA P+I S S + + G DD + KP + +L RV Sbjct: 65 EICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVD 124 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 A+ + K+ + + R+ V G+ L RE +L Y + GK ++ + Sbjct: 125 ALAKDSKIEAGSLRIAGLSIDPLTREAAVDGKPIELTPREFDLLYYFAQHPGKVFSRMDL 184 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 +A++G + E+ V +HI++LR K+ + + + + GY + Sbjct: 185 LNAVWG-YQHEGYEHTVNTHINRLRAKIEADPAQPERILTVWGRGYKL 231 >gi|111022019|ref|YP_704991.1| response regulator, two-component system [Rhodococcus jostii RHA1] gi|110821549|gb|ABG96833.1| response regulator, two-component system [Rhodococcus jostii RHA1] Length = 228 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 48/227 (21%), Positives = 90/227 (39%), Gaps = 14/227 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD A +++ A +G + + ++ DV ++ L G LE Sbjct: 7 LVVDDEATIREAVAARLRAEGFDVVTASDGPSAVAECEASSPDVLVLDVML--PGYDGLE 64 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-------REILARVAAI 115 + R ++A VP++ ++ L G DD ++KP +L R Sbjct: 65 VCRRVQASRPVPVLMLTARADETDMLIGLGVGADDYLSKPFSMRVLVARVHALLRRADRA 124 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + G I V R + L R E +L Y + +A+ + + Sbjct: 125 QETVPAERDGLSVGDIEVDLVERRVRRGVDEIHLTRTEFDLLAYFASRPRAAIARESLLA 184 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 ++G D A V+SH+ LR+KL G D + + +GY++D Sbjct: 185 EVWGWGDGAG-SRTVDSHVKALRRKL----GGDLIRTVHGVGYALDV 226 >gi|223043244|ref|ZP_03613291.1| transcriptional regulatory protein ResD [Staphylococcus capitis SK14] gi|222443455|gb|EEE49553.1| transcriptional regulatory protein ResD [Staphylococcus capitis SK14] Length = 219 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 48/219 (21%), Positives = 84/219 (38%), Gaps = 4/219 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + +++ + D+ ++ L L Sbjct: 4 ILIVEDEQNLARFIELELKHEDYNVDIEYDGRTGLDKALNKSYDLIILDLML--PNINGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR P+I I+ + D G DD + KP E+ R + Sbjct: 62 EICRQIRQEQSTPIIIITAKGETYDKVAGLDYGADDYIVKPFDIEEL-LARIRAILRRQP 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 N + I + D V G L + E +L L NR + + QI ++G F Sbjct: 121 QKNVIDINGIIIDKDAFKVTVDGTQLELTKTEYDLLYVLAENRNHVMQREQILDHVWG-F 179 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + VE NVV+ +I LR KL+ +++ R +GY I Sbjct: 180 NSEVETNVVDVYIRYLRNKLKPFNKEKSIETVRGVGYVI 218 >gi|159900549|ref|YP_001546796.1| two component transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159893588|gb|ABX06668.1| two component transcriptional regulator, winged helix family [Herpetosiphon aurantiacus ATCC 23779] Length = 248 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 39/225 (17%), Positives = 81/225 (36%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD + L ++ + + I+ Sbjct: 21 ILVADDDPAILRLVEVALSGQRYQLVTVSNGLEALKMYRDGEYQLLLIDVM--MPYIDGF 78 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-----ARVAAIY 116 + IRA S VP+I I+ + F+ G DD + KP E+ Sbjct: 79 TVTERIRARSDVPIIIITARDGTDDVVHGFELGADDYITKPFRTAELQARVEAIIRRVEG 138 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + ++ G + + + GE L E +L +L AN G+ + +F Sbjct: 139 YQHRKASPIVRIGDLEIDEPRHKVLLAGEDVNLTPMEFELLYFLAANSGQVFDREVLFRE 198 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++G ++ + N+V+ + +LR+K+ + + R +GY + Sbjct: 199 VWG-YEYVGQTNLVDVCVRRLREKIEEQPSKPRRILTVRGVGYKL 242 >gi|186683314|ref|YP_001866510.1| multi-component transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186465766|gb|ACC81567.1| multi-component transcriptional regulator, winged helix family [Nostoc punctiforme PCC 73102] Length = 624 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 44/222 (19%), Positives = 87/222 (39%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D L+ ++ E L + D+ ++ L + Sbjct: 3 ILLVEDDDLLAQAVATALTKQNYVVDIAADGEAGWELVNVCNYDLILLDVIL--PKLDGI 60 Query: 62 ELPRIIRAHSQVPLI-GISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119 L R +R LI ++ + + D+G DD V KP +E+ AR+ A + R Sbjct: 61 SLCRQLRQEGYQMLILLLTAKDTKTDKVIGLDAGADDYVVKPFDFQELSARIRALLRRGN 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 E G + + + L +E +L+ + N + ++ I ++ Sbjct: 121 TALPPVLEWGSLLLDPSTCEVTYADIALNLTAKEFSLLDLFLRNNQRIFSRATIVDQLWS 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220 + EEN ++SHI LR+KL+ D +++ +GY + Sbjct: 181 AEKDPPEENTIKSHIKSLRQKLKTAGANYDFIETVYGMGYRL 222 Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 9/81 (11%), Positives = 31/81 (38%), Gaps = 1/81 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D + G++L+ + + D+ ++A + G ++ Sbjct: 500 IMVVEDDPQILTVIQQSLETLGITLKTLEDSCYFWDTLTEFSPDLLILDAEMPYINGIEL 559 Query: 61 LELPRIIRAHSQVPLIGISDY 81 ++ R +P++ + D Sbjct: 560 CQVVRNDPCWKLLPVVFVVDN 580 Score = 42.3 bits (98), Expect = 0.046, Method: Composition-based stats. Identities = 8/56 (14%), Positives = 23/56 (41%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK 56 + ++I + V +G + + G+ ++ +L + S DV ++ + Sbjct: 354 LLLVISNDRQVVEGLVNEAENQGLQVKIATNLTAARSIIPSLNPDVVLLDLDIEED 409 >gi|311695852|gb|ADP98725.1| two component transcriptional regulator, winged helix family [marine bacterium HP15] Length = 246 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 43/224 (19%), Positives = 90/224 (40%), Gaps = 9/224 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD A +++ G + + +S+ D+ ++ L G+ Sbjct: 17 LVVDDDAAIRELLEEHLTRVGYDVRTAGDGDQMRERLNSSHVDLIVLDVML--PGDDGFT 74 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R IR +S+VP+I ++ + + G DD + KP RE+ ARV A+ RR S Sbjct: 75 LCRQIREYSRVPIIMLTASSDETDRVVGLELGADDYLAKPFSARELQARVKALLRRASFS 134 Query: 123 NNRAETGPIRVFSDGRDPEV-----QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + L + +L+ +++ + + + I Sbjct: 135 RSDNPRYVDFDRWRLDTLAHELIDENQQGTALSGADFALLQLFLSHPNEVLDRDTISDVT 194 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 G + + VV+ +S+LR++L ++ + + R GY + Sbjct: 195 RGR-ESMPLDRVVDVAVSRLRQRLGDQGRNPRLIKTVRGAGYLL 237 >gi|254824434|ref|ZP_05229435.1| DNA-binding response regulator [Listeria monocytogenes FSL J1-194] gi|255520946|ref|ZP_05388183.1| two-component response regulator [Listeria monocytogenes FSL J1-175] gi|293593670|gb|EFG01431.1| DNA-binding response regulator [Listeria monocytogenes FSL J1-194] Length = 228 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 40/228 (17%), Positives = 83/228 (36%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D V + F + + + + D++ I+ L + Sbjct: 3 LLMIEDNVSVCEMIEMFFMKEEIDATFVHDGKQGYDAFFKDEYDIAIIDLML--PNMDGM 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAA 114 + R IR S VP+I ++ S + + G DD V KP ++ R + Sbjct: 61 TICRKIREVSDVPIIILTAKESESDQVLGLEMGADDYVTKPFSPLTLMARIKAVTRRKNS 120 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + T + L +E +L +LM + + ++ Q+ Sbjct: 121 ATSTENNEDILETTYFKISKRTREIFYQGELLDALTPKEFDLLYFLMQHPRQVFSREQLL 180 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 ++G + +E V+ HI +LR+K+ + + + +GY D Sbjct: 181 EQVWG-YQFYGDERTVDVHIKRLRQKIATETKP-FLHTVWGVGYKFDE 226 >gi|254410123|ref|ZP_05023903.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] gi|196183159|gb|EDX78143.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] Length = 222 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 44/224 (19%), Positives = 92/224 (41%), Gaps = 12/224 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ +D + G + + S D+ ++ L G+ L Sbjct: 4 ILIAEDEPRIASFLEKGLRAKGFTTSVAIDAGETLDMALSHEFDLLIMDLGL--PGKDGL 61 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH----REILARVAAIY 116 ++ +R Q+P+I ++ ++ + + G DD + KP + R+ + Sbjct: 62 QVLEELRGQGEQIPIIILTARDDIRDKVAGLEGGADDYMTKPFRFEELLARVRLRLRNNH 121 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 G + + R V+G+ L RE + E L+ + G+ +++ Q+ S Sbjct: 122 LPKTKEEMVLTIGHVSLDLRTRRVRVKGQRVELSAREFTLAETLLRHPGQVMSREQLLSH 181 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G +D N+V+ +I LRKKL G D +++ R +GY + Sbjct: 182 VWG-YDYDPGSNIVDVYIGYLRKKL----GSDLIETVRGMGYRL 220 >gi|218439703|ref|YP_002378032.1| multi-component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] gi|218172431|gb|ACK71164.1| multi-component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] Length = 799 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 46/225 (20%), Positives = 91/225 (40%), Gaps = 6/225 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + + +E + L D+ ++ L + Sbjct: 3 LLLVEDDQNLAEVIKEALKSQHYLVELATDGQTGLELAEMFEYDLIMLDLML--PKLDGI 60 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + + R P++ ++ + D+G DD + KP + +E+LARV A+ RR Sbjct: 61 QFCQQRRKKGDLTPILLVTGQDDASCKVKALDAGADDYLVKPFNIQELLARVRALLRRGG 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEV-FPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +S+ + L +E ILE + NR + +++ + ++ Sbjct: 121 LSSTPLLQWGPLNLNPSSCQVTYEGELIHLTAKEYGILELFLRNRNRIFSQSALIEHLWS 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDWN 223 FDEA EN V + I LR+KL+ + +++ LGY ++ N Sbjct: 181 -FDEAPTENAVRTQIKSLRQKLKKAGASPNLIETVYGLGYRLNKN 224 Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats. Identities = 15/102 (14%), Positives = 39/102 (38%), Gaps = 1/102 (0%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +++DD + G S+ + + D+ ++ + G ++ Sbjct: 500 IMIVDDDPNLLKLIQFHLEPWGFSITLLEDPKLFWDILERTTPDLLILDVEMPEISGIEL 559 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102 ++ R +P++ +S + + + F +G DD + KP Sbjct: 560 CQVVRNDPHWHHLPILFLSGHRESKFVSEGFQAGADDYIYKP 601 Score = 45.4 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 14/83 (16%), Positives = 34/83 (40%), Gaps = 1/83 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++D+ ++ + G+ + + + + +R DV ++ + E L Sbjct: 375 LLIVDNDFILVQSIVNQAKLWGLIPQVATDIAQAKEAIARSRPDVILLDMGFPDREEICL 434 Query: 62 ELPRIIRA-HSQVPLIGISDYPS 83 EL + IR +P + SD + Sbjct: 435 ELLKDIRQLIPPIPTVITSDQNN 457 >gi|78063615|ref|YP_373523.1| two component heavy metal response transcriptional regulator [Burkholderia sp. 383] gi|77971500|gb|ABB12879.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia sp. 383] Length = 223 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 42/221 (19%), Positives = 94/221 (42%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + +++ + + +L D+ ++ L Sbjct: 3 ILIVEDEPKMASYLRKGLMEASYTVDVAENGKDGLFLALHEDFDLVVLDVML--PEMDGF 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + +RA Q P++ ++ +++ + + G DD + KP + E LAR+ ++ RR Sbjct: 61 EVLKRLRAQKQTPVLLLTAREAIEDKVAGLELGADDYLLKPFAYAEFLARIRSLLRRAPR 120 Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + V R L +E +L+ L G+ + +T I S I+ + Sbjct: 121 NVRDILHVADLEVDLIRRRVRRADTRIDLTAQEFALLQLLAEREGEVLTRTFITSQIWDM 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + NVV++ I +LR K+ N + + R +GY ++ Sbjct: 181 -NFDSDTNVVDAAIKRLRAKIDNTYEKKLIHTIRGMGYVLE 220 >gi|269926131|ref|YP_003322754.1| two component transcriptional regulator, winged helix family [Thermobaculum terrenum ATCC BAA-798] gi|269789791|gb|ACZ41932.1| two component transcriptional regulator, winged helix family [Thermobaculum terrenum ATCC BAA-798] Length = 243 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 48/228 (21%), Positives = 88/228 (38%), Gaps = 11/228 (4%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + + +DD L L ++G +E D+ ++ L Sbjct: 7 LILAVDDDPLTGKLIDFLLENEGHEVEIAADPSQALRALEQRTPDLILLDVQL--PRMDG 64 Query: 61 LELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L + I + + ++P+I ++ +Q L +SG DD V KP E++ARV ++ RR Sbjct: 65 FTLLKHIKKQYPEMPVIMLTARAEMQDKLTGLESGADDYVVKPFEPAELVARVKSVLRRA 124 Query: 120 KVSNNRAETGPIRVFSDGRDPE------VQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 I + GE L E RIL+ LM++ + V++ + Sbjct: 125 NRQLAATMDMLIVENGIELNIPDLTAKLPSGEKVTLTPMEMRILQRLMSSPNRVVSRDDL 184 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 G + N ++ +I ++RKKL + + + R GY Sbjct: 185 AMYAAG-YVADTSSNQIDVYIGRIRKKLGDDPNDPKYIATIRGSGYKF 231 >gi|116513324|ref|YP_812230.1| DNA-binding response regulator [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|116092639|gb|ABJ57792.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 242 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 45/233 (19%), Positives = 93/233 (39%), Gaps = 19/233 (8%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G +E E D+ ++ L + L Sbjct: 5 ILVVDDEKPISDIIKFNLIKEGFDVETAYDGEEAVEKVEECNPDLLILDLML--PKKDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-------- 113 E+ R +R +P+I ++ + + G DD V KP +RE++ARV Sbjct: 63 EVAREVRQTHDMPIIMVTAKGGEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRDI 122 Query: 114 -------AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166 + + +N + G + + D E GE L RE +L Y+ + + Sbjct: 123 VKKAVEVNQQKEKEQESNDIQIGNLLIKPDAYLVEKNGEKIELTHREFELLYYMAQHMDQ 182 Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGY 218 + + + ++G +D + V+ + +LR+K+ + + ++R +GY Sbjct: 183 VMTREHLLQTVWG-YDYFGDVRTVDVTVHRLREKIEDNPVRPKILVTRRGVGY 234 >gi|326562467|gb|EGE12785.1| two-component system phosphate regulon response regulator PhoB [Moraxella catarrhalis 46P47B1] gi|326564282|gb|EGE14512.1| two-component system phosphate regulon response regulator PhoB [Moraxella catarrhalis 103P14B1] gi|326567216|gb|EGE17336.1| two-component system phosphate regulon response regulator PhoB [Moraxella catarrhalis 12P80B1] gi|326568279|gb|EGE18361.1| two-component system phosphate regulon response regulator PhoB [Moraxella catarrhalis BC8] gi|326569979|gb|EGE20026.1| two-component system phosphate regulon response regulator PhoB [Moraxella catarrhalis BC1] gi|326570061|gb|EGE20107.1| two-component system phosphate regulon response regulator PhoB [Moraxella catarrhalis BC7] gi|326572915|gb|EGE22900.1| two-component system phosphate regulon response regulator PhoB [Moraxella catarrhalis CO72] gi|326573839|gb|EGE23792.1| two-component system phosphate regulon response regulator PhoB [Moraxella catarrhalis O35E] gi|326574741|gb|EGE24677.1| two-component system phosphate regulon response regulator PhoB [Moraxella catarrhalis 101P30B1] Length = 230 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 38/223 (17%), Positives = 85/223 (38%), Gaps = 5/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG--KGEK 59 ++++D + + + + + D+ ++ + G Sbjct: 5 ILVVEDEPAINELIAGTLDLSDFDVVQAYDTQGAYVAVVDEKPDLILLDWMMPHGESGID 64 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 + A + +P+I ++ + D+GVDD + KP RE+++RV A+ RR Sbjct: 65 FARRLKKNPATADIPIIMLTAKGEEDNKVYGLDAGVDDYITKPFSTRELISRVKAVLRRT 124 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPR--RERRILEYLMANRGKRVAKTQIFSAI 177 + + + + V + E R+L + + + + + QI A+ Sbjct: 125 GIDMGKELMQAGNLSINTASQRVMAGGTEITMSITEYRLLCFFVTHSERAYTRAQILDAV 184 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G + ++E ++ HI +LRK L + + R GY Sbjct: 185 WG-GNVYIDERTIDVHIRRLRKLLAPYGADTLIQTVRGTGYRF 226 >gi|317063635|ref|ZP_07928120.1| two-component response regulator [Fusobacterium ulcerans ATCC 49185] gi|313689311|gb|EFS26146.1| two-component response regulator [Fusobacterium ulcerans ATCC 49185] Length = 233 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 42/221 (19%), Positives = 92/221 (41%), Gaps = 6/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D ++ + S++ E S D+ ++ Sbjct: 9 ILIIEDEKKIRRYLQLELEHEKYSVDTAQDGEEGVEKFKSNFYDLILLDLM--MPKLSGE 66 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119 E+ +IIR S +P+I ++ + ++ D G DD + KP E+ AR+ + Sbjct: 67 EVCKIIRKTSNIPIIVLTAKDQILNKVELLDMGADDYLTKPFEIEELFARIRVALRNKSN 126 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + +++ + L + E + YL+ N+ V++ +I + ++G Sbjct: 127 FSNTDFLYYDILKLNLKTNILYKDEKEISLTKTEYNLFYYLLLNKELVVSREKILNEVWG 186 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D EE +V+ +I+ LRKK+ + + + R GY + Sbjct: 187 -YDYMGEEKIVDVYINALRKKI-DYDENKFIHTVRGFGYVL 225 >gi|290352217|dbj|BAI78819.1| putative two-component response regulator [Streptococcus pyogenes] Length = 228 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 90/224 (40%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + +G + + D+ ++ L Sbjct: 5 ILIIEDEKNLARFVSLELQHEGYEVFVEVNGREGLETALEKEFDLILLDLML--PEMDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R ++ ++ ++ S+ + D G DD + KP E+LAR+ AI+RR + Sbjct: 63 EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122 Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + R + L +RE +L LM N + + + ++ S Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +DEAVE NVV+ +I LR K+ + + R +GY I Sbjct: 183 VW-KYDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225 >gi|225570609|ref|ZP_03779634.1| hypothetical protein CLOHYLEM_06711 [Clostridium hylemonae DSM 15053] gi|225160622|gb|EEG73241.1| hypothetical protein CLOHYLEM_06711 [Clostridium hylemonae DSM 15053] Length = 241 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 44/221 (19%), Positives = 91/221 (41%), Gaps = 6/221 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D ++D + G + + + S D+ ++ Sbjct: 24 LIVEDEKNMQDIIVEYMRRGGHTCFTADDGVDALMILKSNPMDLMILDVM--MPHLDGFS 81 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLKV 121 + ++ R S +P+I ++ L ++ G DD + KP + +LA+ A + R Sbjct: 82 VCKLAREMSNMPIIMLTAKGGEDDKLKGYEYGADDYMTKPFSPKVLLAKANALLRRSSPA 141 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + G I V + G+ L +E +L +LM N G+ A+ Q+ + I+G + Sbjct: 142 PLDALNVGKIMVIPSSHKVFIDGQEITLTHKEYELLYFLMVNPGQIFARDQLLNRIWG-Y 200 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 D V++HI LR+KL ++ + + GY + Sbjct: 201 DFEGTTRTVDTHIKTLRQKLGDEG--KHIVTLIRSGYKFEV 239 >gi|69247505|ref|ZP_00604375.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Enterococcus faecium DO] gi|293379348|ref|ZP_06625492.1| putative regulatory protein VanR [Enterococcus faecium PC4.1] gi|293557181|ref|ZP_06675732.1| regulatory protein VanR [Enterococcus faecium E1039] gi|293563865|ref|ZP_06678296.1| regulatory protein VanR [Enterococcus faecium E1162] gi|293569177|ref|ZP_06680483.1| regulatory protein VanR [Enterococcus faecium E1071] gi|294614522|ref|ZP_06694434.1| regulatory protein VanR [Enterococcus faecium E1636] gi|294619788|ref|ZP_06699184.1| regulatory protein VanR [Enterococcus faecium E1679] gi|294623741|ref|ZP_06702569.1| regulatory protein VanR [Enterococcus faecium U0317] gi|68194830|gb|EAN09305.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Enterococcus faecium DO] gi|291588146|gb|EFF19988.1| regulatory protein VanR [Enterococcus faecium E1071] gi|291592615|gb|EFF24212.1| regulatory protein VanR [Enterococcus faecium E1636] gi|291593972|gb|EFF25450.1| regulatory protein VanR [Enterococcus faecium E1679] gi|291596695|gb|EFF27918.1| regulatory protein VanR [Enterococcus faecium U0317] gi|291600662|gb|EFF30963.1| regulatory protein VanR [Enterococcus faecium E1039] gi|291604176|gb|EFF33679.1| regulatory protein VanR [Enterococcus faecium E1162] gi|292641871|gb|EFF60037.1| putative regulatory protein VanR [Enterococcus faecium PC4.1] Length = 229 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 42/227 (18%), Positives = 91/227 (40%), Gaps = 9/227 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD + + ++G + + D+ + ++ + Sbjct: 3 ILIADDDKEIVELLSIYVHNEGYEAVKAYDGKEALSKIRTI-PDIELLILDIMMPEMDGM 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + +R SQ+P+I ++ + + +G DD V KP + E++ARV ++ RR K+ Sbjct: 62 QVVKELRKESQIPIIMLTAKTTDMDKIKGLVAGADDYVTKPFNPLEVMARVKSLLRRTKM 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQG------EVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + V + + + + L E IL L ++ + + +IF Sbjct: 122 QIAPDQPDVLEVNALIINKDSHEVKTIDGKEIQLTALEFGILYLLASHPNRVFSADEIFE 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221 ++ + V V H+S LR K+ G + + +GY ID Sbjct: 182 RVW-KQESIVSAKTVMVHVSHLRDKIEEATGGEKVIQTVWGVGYKID 227 >gi|293189576|ref|ZP_06608295.1| DNA-binding heavy metal response regulator CopR [Actinomyces odontolyticus F0309] gi|292821476|gb|EFF80416.1| DNA-binding heavy metal response regulator CopR [Actinomyces odontolyticus F0309] Length = 219 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 53/222 (23%), Positives = 95/222 (42%), Gaps = 10/222 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A + G E +++ R + ++ L Sbjct: 4 ILIVEDEARIAAFVAKGLRAAGFVPEIYSTGSEAVEAALQGRGALMLLDVGL--PDIDGF 61 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ IR +P+I ++ S+ + + G DD V KP E+LARV R Sbjct: 62 EVLEQIRGQGVGMPVIMLTARSSVADRVAGLEGGADDYVPKPFSFEELLARVRLRLREET 121 Query: 121 VSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++ G + + R V E L RE +LE M N G+ +++ Q+ SA++ Sbjct: 122 PTSSAMTLTRGSLVLDLKTRRACVGEEWVDLSAREFTLLETFMRNPGQVLSREQLLSAVW 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G+ D NVV+ ++S LR+K+ G D ++ R +GY + Sbjct: 182 GI-DFDGASNVVDVYLSYLRQKI----GKDYFETVRGMGYRL 218 >gi|296136175|ref|YP_003643417.1| two component transcriptional regulator, winged helix family [Thiomonas intermedia K12] gi|295796297|gb|ADG31087.1| two component transcriptional regulator, winged helix family [Thiomonas intermedia K12] Length = 244 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 47/227 (20%), Positives = 87/227 (38%), Gaps = 9/227 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D + + G S E + DV I+ L G + Sbjct: 7 ILIVEDEPAIAELLAMNLQHAGHCPIRAGSAEEALRVIRDVLPDVLLIDWMLPGMSGVAL 66 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 R +P+I ++ + D+G DD + KP +E+LAR+ A+ RR Sbjct: 67 ARALRTDARTKAIPIIMLTARSEEGDKVQGLDAGADDYITKPFSPKELLARIRAVLRRRA 126 Query: 121 VSNNRAETG-------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + P + + P + L E ++L YLMA+ + ++ + Sbjct: 127 PQLTAEQVQIGGLSVDPSSRRALFKKPGSEPLEIRLGPTEFKLLHYLMAHPERVHSRGAL 186 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G +EE V+ HI +LR+ L + V++ R GY Sbjct: 187 LDKVWGDH-VFIEERTVDVHIKRLREALSPVQCAEMVETVRGAGYRF 232 >gi|253577429|ref|ZP_04854745.1| two component transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251843229|gb|EES71261.1| two component transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 228 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 49/222 (22%), Positives = 93/222 (41%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L+DD + ++G + + + + V ++ G Sbjct: 9 ILLVDDEPHIVQFLELGLQNEGFEVRTAGDGMTAVAIAAEFQPHVIVLDVM--MPGMDGF 66 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R++R + + +I ++ ++ + G DD V KP E+LAR+ A R Sbjct: 67 EVCRLLRKNGENVSIIMLTAKDEVEDRVKGLTIGADDYVVKPFSFEELLARIGARLRNQF 126 Query: 121 VSNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + ++ +V L E +L+YL+ N G ++KT I ++G Sbjct: 127 PALFGEVVIGPFRLDDRRKEIAYLDQVLELSPTEYELLKYLILNHGIVLSKTTILDKVWG 186 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +D EEN+VE +I LR+KL ++ + + R GY +D Sbjct: 187 -YDFGGEENIVEVYIRSLREKLNDR-EHRLIRTLRGAGYRVD 226 >gi|225351867|ref|ZP_03742890.1| hypothetical protein BIFPSEUDO_03469 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157114|gb|EEG70453.1| hypothetical protein BIFPSEUDO_03469 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 242 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 42/228 (18%), Positives = 87/228 (38%), Gaps = 16/228 (7%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + +G + + ++ R D+ ++ L LE Sbjct: 16 LVVEDEPTLATAIAQRITAEGWTARVASDGASAVQAATTLRPDLVIMDIML--PVMDGLE 73 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + I A VP++ ++ + +G DD + KP RE++AR A+ RR+ + Sbjct: 74 ATKRIVAERPVPVLILTARDDEADKVIGLGAGADDYMTKPFSMRELIARCKALLRRVDRA 133 Query: 123 NNRAETGPIR---------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 A+ + R V G+ L E +L L + + ++ Sbjct: 134 KVIAKNSENEKLLDFGSLVIDPAQRIVTVNGKQVHLTPTEFDLLATLARKPKSVLTREKL 193 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ D + V+SH+ LR KL +K + + +GY+ + Sbjct: 194 LEEVWDWVDASG-TRTVDSHVKALRHKLGSKT----IRTVHGVGYAFE 236 >gi|206579174|ref|YP_002240684.1| transcriptional regulatory protein CusR [Klebsiella pneumoniae 342] gi|290512113|ref|ZP_06551480.1| transcriptional regulatory protein YedW [Klebsiella sp. 1_1_55] gi|206568232|gb|ACI10008.1| transcriptional regulatory protein CusR [Klebsiella pneumoniae 342] gi|289775108|gb|EFD83109.1| transcriptional regulatory protein YedW [Klebsiella sp. 1_1_55] Length = 227 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 36/224 (16%), Positives = 98/224 (43%), Gaps = 6/224 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G ++ ++ L ++ D+ ++ L Sbjct: 3 ILIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTSDYDLLILDIML--PDVNGW 60 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118 ++ R++RA + +P++ ++ +++ + + G DD + KP E+LARV Sbjct: 61 DIVRMLRAANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + ++ + + V R L +E +LE+ + ++G+ + ++ I S ++ Sbjct: 121 AVIVESQFQAADLSVDLVSRKVTRGATRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + + + N ++ + +LR K+ N + + R +GY ++ Sbjct: 181 DM-NFDSDTNAIDVAVKRLRAKIDNDFEPKLIQTVRGVGYMLEV 223 >gi|330816276|ref|YP_004359981.1| Response regulator [Burkholderia gladioli BSR3] gi|327368669|gb|AEA60025.1| Response regulator [Burkholderia gladioli BSR3] Length = 233 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 46/226 (20%), Positives = 82/226 (36%), Gaps = 8/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++I+D + + G + E + L S D+ ++ L G G Sbjct: 5 ILVIEDEPAISELISVNLQHAGHCAIRAYNAEQAQNLISDVLPDLVLLDWMLPGKSGIAF 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILA------RVAA 114 R +P+I ++ Q + + G DD V KP +E++A R A Sbjct: 65 ARELRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRRRA 124 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 V + E L E R+L + M + + ++TQ+ Sbjct: 125 PQLTEDVVSINGLRLDPATHRVAAAAEGNEIKLDLGPTEFRLLHFFMTHPERVHSRTQLL 184 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G VEE V+ HI +LR L+ +++ R GY + Sbjct: 185 DQVWGDH-VFVEERTVDVHIKRLRAALKPAGCDAMIETVRGSGYRL 229 >gi|322805284|emb|CBZ02848.1| two-component response regulator [Clostridium botulinum H04402 065] Length = 240 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 45/227 (19%), Positives = 93/227 (40%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 ++IDD + + +G + +LE + D+ ++ L + Sbjct: 11 ILVIDDEEDIVRLIRTVLKKEGFQNIYYATNLEDGFKEFNKVEPDIVILDIML--PDGEG 68 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI------HHREILARVAA 114 EL + IRA S+VP++ +S + F G DD + KP + + R + Sbjct: 69 YELCKTIRAKSKVPILFLSAKGEEIDKILGFAIGGDDYITKPFSTKELAYRVKAHLRRYS 128 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 +K N GP + + + GE+ L +E ++ + + + ++K +I Sbjct: 129 YVDEVKEEKNILSFGPFELNISKAEFKKDGELIELKPKELALIAFFAKHPNQIISKEKIC 188 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++G D +N + HI +LR+K+ + + + + LGY + Sbjct: 189 DNVWGE-DYYGFDNTIMVHIRRLREKIEKEPSRPEYLINVKGLGYKL 234 >gi|310829976|ref|YP_003962333.1| two component transcriptional regulator [Eubacterium limosum KIST612] gi|308741710|gb|ADO39370.1| two component transcriptional regulator [Eubacterium limosum KIST612] Length = 228 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 56/226 (24%), Positives = 103/226 (45%), Gaps = 9/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + ++G + EG + S D+ ++ L K Sbjct: 6 ILVVEDDREINSMLCEMLDENGYAAEGAFTGMEGLSRLRSGDYDLLILDLMLPYK--SGD 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + +R+ S +P+I IS ++Q LD F G DD + KP E+L RV A+ RR Sbjct: 64 AVLQELRSFSSLPVIVISAKDTVQNKLDLFHMGADDYLTKPFDLDEVLVRVEAVLRRCGS 123 Query: 122 SNNRAETGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 S + ++ V ++ + V G+ L +E ILE LM K +K +F + Sbjct: 124 SEAQRAPEILQAGKLAVDTESKTASVDGQELVLTAKEYGILELLMRYPHKVFSKANLFES 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 I+ + A E+N + H+S LR KL+ + + + +GY ++ Sbjct: 184 IWNE-EYACEDNTLNVHMSNLRNKLKAADPETEYIKTVWGMGYRMN 228 >gi|291518725|emb|CBK73946.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Butyrivibrio fibrisolvens 16/4] Length = 236 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 35/233 (15%), Positives = 79/233 (33%), Gaps = 17/233 (7%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 + +DD +++ L +G + E + D+ ++ G+ L Sbjct: 6 ILTVDDNEEIRNIIKILLESEGYEVLEACDGEAALSMVD-DSIDLIILDIM--MPGKSGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-------------REI 108 ++ +IIR Q+P++ ++ + G DD ++KP H + Sbjct: 63 DVCKIIREKYQMPILFLTAKGTDSDKSLGLLIGGDDYLSKPFSHAELTARVKSLLRRYYV 122 Query: 109 LARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 A ++ + + R + L E +I + L+++ G+ Sbjct: 123 YKGKEAPADDNFITYDVFKVAKDRNEVYSTSSTGEECPLDLSELEYQIFKLLISSPGRIF 182 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220 I+ +I+ + HI LR K+ + + + GY + Sbjct: 183 PAQLIYESIWNEPYFYSSNATIMVHIRNLRTKIEEDPSNPRHLLTVWGKGYKL 235 >gi|219855228|ref|YP_002472350.1| hypothetical protein CKR_1885 [Clostridium kluyveri NBRC 12016] gi|219568952|dbj|BAH06936.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 231 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 41/223 (18%), Positives = 93/223 (41%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G ++ D+ ++ L + Sbjct: 9 ILIVEDEIKIARFVQLELEHEGYMVDQTGDGRVGLEKALKGGYDLIILDVML--PSLNGM 66 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R S++P+I ++ + + D G +D + KP E+LAR+ +++ Sbjct: 67 EVLRRLRQISEIPVIMLTAKDEIMDKVMGLDIGAEDYMTKPFAIEELLARIRVVFKHKSN 126 Query: 122 SNNRAETGPI----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 +N + ++ + L ++E +L+YLM N+ +++ I + Sbjct: 127 NNVKVNNIINAGSLQMDIGRHIVTYENSGIDLTKKEFDLLKYLMVNKDIALSRENILEKV 186 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G +D + N+V+ +I LR K+ +K + + R LGY Sbjct: 187 WG-YDYLGDTNIVDVYIRYLRSKIDDKFNKKYIYTIRGLGYQF 228 >gi|126654044|ref|ZP_01725875.1| response regulator ArlR [Bacillus sp. B14905] gi|126589478|gb|EAZ83623.1| response regulator ArlR [Bacillus sp. B14905] Length = 247 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 46/223 (20%), Positives = 93/223 (41%), Gaps = 8/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G + L + DV ++ L G + Sbjct: 27 ILVVEDEKHIARFVELELQHEGYDVTVAFEGREGLSLATIEAFDVLLLDVML--PGINGI 84 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117 E+ R +R SQVP+I I+ ++ + D+G DD + KP I + Sbjct: 85 EICRRVRTQSQVPIILITARDAVMDRVAGLDAGADDYIVKPFAIEELLARIRTILRRATT 144 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + ++ I + + VQG L + E +L+ L+ ++ + + I +++ Sbjct: 145 QEPANSEFLSLRDIEIDIAAYEVFVQGNKLDLTKTEYDLLKLLIEHKNRVCTREHILTSV 204 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G +D +E NVV+ +I LR KL +++ R +GY + Sbjct: 205 WG-YDTDIETNVVDVYIRHLRTKLPGDTNA-YIETVRGVGYVM 245 >gi|126470034|dbj|BAF48119.1| hypothetical protein [Rhodococcus rhodochrous] Length = 251 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 51/224 (22%), Positives = 94/224 (41%), Gaps = 9/224 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D A + + + DG L DV ++ L +E Sbjct: 27 MVVEDEAALANLIGSYLERDGFEATITGDGAEAIALARRIDPDVLVLDLGL--PSLDGVE 84 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +R S ++ ++ TL G DD + KP RE++AR+ A+ RR + + Sbjct: 85 VCRQLRTFSDAYVVMLTARTEELDTLIGLSVGADDYMTKPFGPRELIARIQAMMRRPRTT 144 Query: 123 NNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + +GR+ V G L R E +L L + G + + Q+ A+ Sbjct: 145 DTARSRQIRTFGDLSIDVEGREVTVDGVPVSLTRTEFDVLAALSQDPGIVITRAQLIGAV 204 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220 +G + +E++V+ HI LR+KL + V + R +GY + Sbjct: 205 WG-PNWVGDEHLVDVHIGHLRRKLGDDATRGRYVRTVRGVGYRM 247 >gi|21225798|ref|NP_631577.1| two-component system response regulator [Streptomyces coelicolor A3(2)] gi|256783167|ref|ZP_05521598.1| two-component system response regulator [Streptomyces lividans TK24] gi|289767048|ref|ZP_06526426.1| two-component system response regulator [Streptomyces lividans TK24] gi|7799269|emb|CAB90891.1| two-component system response regulator [Streptomyces coelicolor A3(2)] gi|289697247|gb|EFD64676.1| two-component system response regulator [Streptomyces lividans TK24] Length = 233 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 43/229 (18%), Positives = 80/229 (34%), Gaps = 14/229 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +LI+D V+ G G + S E R D+ ++ L LE Sbjct: 5 LLIEDDPAVQRGVSLALKRRGHEVAVAGSGETGLLTLERHRPDLVLLDLML--PNMSGLE 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP----------IHHREILARV 112 + R IR ++P+I +S + ++G DD + KP +A Sbjct: 63 VCRRIRESKRIPIIILSARGDEIDMVVGLEAGADDYIVKPAGAELLEARIRAVLRRVAPA 122 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 R + V G PL E ++L +L A G+ ++ Q Sbjct: 123 QDGGSRDPADAGPERHADLTVDRTTLVVAKHGTELPLAPSELKLLLFLTATPGQVYSRQQ 182 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 + ++ + +V++ + +LR ++ + V + R GY Sbjct: 183 LLEQVW-EHSFYGDVRLVDACVMRLRARIEDDPRKPVYVQTVRGFGYRF 230 >gi|189346302|ref|YP_001942831.1| two component transcriptional regulator, winged helix family [Chlorobium limicola DSM 245] gi|189340449|gb|ACD89852.1| two component transcriptional regulator, winged helix family [Chlorobium limicola DSM 245] Length = 233 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 46/229 (20%), Positives = 92/229 (40%), Gaps = 12/229 (5%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + ++++D + G + E D+ ++ L G Sbjct: 5 LLLVVEDDQNLAKLLGYNLERAGYKYHISETGEDALDQLLKRSFDLILLDIML--PGIDG 62 Query: 61 LELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 E+ R IR H +P+I ++ + F+ G+DD V KP RE+ R+ AI + Sbjct: 63 FEVCRRIRQHQMLKDLPIIMLTAKGEEIDKVLGFELGIDDYVVKPFSPRELNLRIRAILK 122 Query: 118 RLKVSNNRAETGPI----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 R + + V + G+ L E ++L L+ +G+ ++ + Sbjct: 123 RDRRQRAGLQEVLSAGGLDVDITRHQITLDGKGVILTLMEFKLLVALLKRKGQAQSREAL 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 S ++ + D+ + +++HI++LR+KL + + R LGY D Sbjct: 183 LSDVWDV-DKTINTRTIDTHITRLREKLGETG--KMIKTVRGLGYKFDE 228 >gi|291008487|ref|ZP_06566460.1| response regulator, two-component system [Saccharopolyspora erythraea NRRL 2338] Length = 227 Score = 138 bits (347), Expect = 7e-31, Method: Composition-based stats. Identities = 47/219 (21%), Positives = 79/219 (36%), Gaps = 5/219 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD V+ +G+ + + L + DV ++ L G Sbjct: 6 LVVDDEPGVRSALRRGLSAEGMDVTVASDGVEALRLAGTGAFDVVVLDIML--PGLSGYR 63 Query: 63 LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-REILARVAAIYRRLK 120 + +RA P++ +S D D G D + KP + A + R Sbjct: 64 VLERLRADDVATPVLLLSAKDGEVDQADGLDLGADGYLVKPFSFLVLVAQVRALLRRGEA 123 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 G + + R+ G L RE +L L G V+K + ++G Sbjct: 124 AGRGELRVGELLIDRGSREVRWAGTEVSLSPREYGLLVALAGRSGAVVSKEDLLRTVWGE 183 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 D+ V NVVE ++ LR+KL V + R GY Sbjct: 184 -DQFVTRNVVEVYVGYLRRKLAAAGAGHLVQTVRGHGYR 221 >gi|288937383|ref|YP_003441442.1| two component transcriptional regulator, winged helix family [Klebsiella variicola At-22] gi|288892092|gb|ADC60410.1| two component transcriptional regulator, winged helix family [Klebsiella variicola At-22] Length = 227 Score = 138 bits (347), Expect = 7e-31, Method: Composition-based stats. Identities = 37/224 (16%), Positives = 99/224 (44%), Gaps = 6/224 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G ++ ++ L ++ D+ ++ L Sbjct: 3 ILIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTSDYDLLILDIML--PDVNGW 60 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118 ++ R++RA + +P++ ++ +++ + + G DD + KP E+LARV Sbjct: 61 DIVRMLRAANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + ++ + G + V R L +E +LE+ + ++G+ + ++ I S ++ Sbjct: 121 AVIVESQFQAGDLSVDLVSRKVTRGATRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + + + N ++ + +LR K+ N + + R +GY ++ Sbjct: 181 DM-NFDSDTNAIDVAVKRLRAKIDNDFEPKLIQTVRGVGYMLEV 223 >gi|239931754|ref|ZP_04688707.1| two component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291440123|ref|ZP_06579513.1| two component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291343018|gb|EFE69974.1| two component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 220 Score = 138 bits (347), Expect = 7e-31, Method: Composition-based stats. Identities = 46/222 (20%), Positives = 88/222 (39%), Gaps = 10/222 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G + E + D+ ++ L Sbjct: 4 ILIVEDEERIASFVEKGLRANGFTTTVVPDGEAGYEYALTGGFDLVVLDIGL--PDRDGF 61 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R +R P+I ++ S++ T+ + G DD + KP E+LARV R Sbjct: 62 TVLRELRESRVTTPVIVLTARDSVRDTVAGLEGGADDWMTKPFRFEELLARVRLRLRTAA 121 Query: 121 VSNNRAETGPIR--VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + R L RE +LE + + G+ +++ QI S ++ Sbjct: 122 RAPEVTVLKSGDLSLDLRTRRARAADRTVDLTAREFVLLELFLRHPGQVLSREQILSHVW 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G +D N+V+ ++ LRKKL G + V + R +GY + Sbjct: 182 G-YDFDPGSNIVDVYVRALRKKL----GAEKVQTVRGMGYRL 218 >gi|228961520|ref|ZP_04123130.1| DNA-binding response regulator [Bacillus thuringiensis serovar pakistani str. T13001] gi|228798138|gb|EEM45141.1| DNA-binding response regulator [Bacillus thuringiensis serovar pakistani str. T13001] Length = 224 Score = 138 bits (347), Expect = 7e-31, Method: Composition-based stats. Identities = 42/226 (18%), Positives = 85/226 (37%), Gaps = 12/226 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +++ +G + + DV ++ L Sbjct: 4 ILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALERWNEG-PDVLILDVML--PDTDGY 60 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAI 115 EL R+ R +P++ ++ + L G DD V KP ++ R Sbjct: 61 ELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRVK 120 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 VS+ E G I + R V G+ L RE + + ++N + + ++ Sbjct: 121 KTETAVSHEVIEAGEIVICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 180 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G F+ V+ + +LRKKL + + + +GY +D Sbjct: 181 KVWG-FEYIGNTRAVDIMVQRLRKKLGTSG--EYIKTIYGVGYKLD 223 >gi|229059543|ref|ZP_04196925.1| hypothetical protein bcere0026_16550 [Bacillus cereus AH603] gi|228719826|gb|EEL71420.1| hypothetical protein bcere0026_16550 [Bacillus cereus AH603] Length = 229 Score = 138 bits (347), Expect = 7e-31, Method: Composition-based stats. Identities = 40/227 (17%), Positives = 87/227 (38%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D A++ + G +++ S E D+ ++ L G Sbjct: 4 ILIIEDEAIIAELEKDYLEVAGYTVDIDYSGEKGLQRVILEDYDLLILDIML--PGIDGY 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + +R +P++ +S + G DD + KP E++ARV A R Sbjct: 62 EICKQVRLKKDIPILMVSAKQEEIDKIKGLGFGADDYIIKPFSPSEMVARVNAHLARYDR 121 Query: 122 SNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + E + R + G L +E +L + + + +K ++F Sbjct: 122 LTGKREQIKDEIRIRGLLIDKSARRVFINGTEVMLTGKEFDLLTCMAEHPNQVFSKDRLF 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++G+ D + V H+ +R+K+ + +++ +GY Sbjct: 182 ETVWGM-DVIGDAATVAVHVKNIRQKIELDPFDKSYIETIWGVGYRF 227 >gi|222081273|ref|YP_002540636.1| two-component response regulator protein [Agrobacterium radiobacter K84] gi|221725952|gb|ACM29041.1| two-component response regulator protein [Agrobacterium radiobacter K84] Length = 241 Score = 138 bits (347), Expect = 7e-31, Method: Composition-based stats. Identities = 52/228 (22%), Positives = 95/228 (41%), Gaps = 12/228 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD ++ F D+G ++ ++ D ++ L G G+ L+ Sbjct: 12 LVVDDDPRIRQMLTRYFEDEGYAVSTASNGLEMRACLQQENFDAILLDWVLPG-GKDGLD 70 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R IRA S VP+I ++ + + + G DD + KP H RE+ AR+ +I RR + + Sbjct: 71 LAREIRAQSDVPIIMLTGRDDVVDRIVGIEVGADDYIAKPFHLREVHARLKSILRRRQPA 130 Query: 123 NNRAETGPIRVFSDGRDPEVQ---------GEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + P V G L E IL + G+ +++ + Sbjct: 131 IRSPDKNPDDVIRFEGWQLDTGKRQLLAAEGHEIELTTGEFDILVVFARHAGRVLSRELL 190 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 G EA + +++ I++LRKK+ + + S R +GY Sbjct: 191 MDLTRGRNLEAFD-RTIDAQIARLRKKIETDPARPQLIKSIRGVGYVF 237 >gi|254390598|ref|ZP_05005812.1| two component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294812195|ref|ZP_06770838.1| Two component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|326440649|ref|ZP_08215383.1| two component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|197704299|gb|EDY50111.1| two component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294324794|gb|EFG06437.1| Two component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 220 Score = 138 bits (347), Expect = 7e-31, Method: Composition-based stats. Identities = 48/222 (21%), Positives = 92/222 (41%), Gaps = 10/222 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G + + + D+ ++ L G Sbjct: 4 ILIVEDEERIASFVEKGLRANGFTTTVVGDGDSAFDYAVTGGFDLIVLDIGL--PGRDGF 61 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R +R VP+I ++ S++ T+ + G DD + KP E+LARV R Sbjct: 62 TVLRQLREARVSVPVIILTARDSVRDTVAGLEGGADDWMTKPFRFEELLARVRLRLRTAA 121 Query: 121 VSNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + G + + R L RE +LE + + G+ +++ QI S ++ Sbjct: 122 RAPEVTVLRNGELSLDLRTRRARSGERTVDLTAREFVLLELFLRHPGQVLSREQILSHVW 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G +D N+V+ ++ LRKKL G V++ R +GY + Sbjct: 182 G-YDFDPGSNIVDVYVRALRKKL----GAGRVETVRGMGYRL 218 >gi|114778428|ref|ZP_01453273.1| response regulator receiver domain protein (CheY-like) [Mariprofundus ferrooxydans PV-1] gi|114551272|gb|EAU53830.1| response regulator receiver domain protein (CheY-like) [Mariprofundus ferrooxydans PV-1] Length = 227 Score = 138 bits (347), Expect = 7e-31, Method: Composition-based stats. Identities = 55/221 (24%), Positives = 100/221 (45%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D V ++G +++ E E+L D+ ++ L + L Sbjct: 3 ILVVEDEERVAHFIQKGLKEEGHAVDISYDGEDGEFLAEVNDYDLIILDLML--PKKNGL 60 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R +RA P++ ++ S++ + D+G DD + KP E+LARV A+ RR Sbjct: 61 VVCRELRASGVSTPVLMLTARDSVEDKVRGLDAGADDYLAKPFAFEELLARVRALLRRKS 120 Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S + + R QG L +E +LEYLM N GK +++T I ++ Sbjct: 121 ESKSPVLKVADLELDPISRRVSRQGSSIRLTTKEYALLEYLMRNPGKVLSRTLIGEHVWD 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + E NV++ +IS LR K+ + + R GY + Sbjct: 181 M-NFDPESNVIDVYISHLRSKIDKGFDVSLLHTLRGQGYLL 220 >gi|71737192|ref|YP_276924.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. phaseolicola 1448A] gi|289646922|ref|ZP_06478265.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. aesculi str. 2250] gi|71557745|gb|AAZ36956.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. phaseolicola 1448A] gi|320326322|gb|EFW82375.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. glycinea str. B076] gi|320331685|gb|EFW87623.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. glycinea str. race 4] gi|330872407|gb|EGH06556.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. glycinea str. race 4] gi|330891387|gb|EGH24048.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. mori str. 301020] gi|330989497|gb|EGH87600.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. lachrymans str. M301315] Length = 224 Score = 138 bits (347), Expect = 7e-31, Method: Composition-based stats. Identities = 38/223 (17%), Positives = 87/223 (39%), Gaps = 5/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G ++ + +L DV ++ L Sbjct: 3 ILVVEDEPKTAEYMHQGLTESGYIVDIAATGLDGLYLAQHQAYDVVILDVNL--PEMDGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119 E+ +R ++ ++ L+ + + G DD + KP E+ R Sbjct: 61 EVLSRLRKTVSTRVMMVTARGRLEEKVKGLELGADDYLVKPFEFPELLARVRTLMRRSEQ 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++ + G + + + L +E +L LM + G+ +++TQI S ++ Sbjct: 121 TTTSKVLQVGDLELDQGRHRAFRGSQRIDLTTKEFALLHLLMRHSGEVMSRTQIISLVWD 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + + + NVVE I +LR K+ + + + R +GY ++ Sbjct: 181 M-NFDCDTNVVEVSIRRLRAKIDDPFETKLIHTLRGVGYVLEV 222 >gi|315646998|ref|ZP_07900112.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] gi|315277650|gb|EFU40975.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] Length = 231 Score = 138 bits (347), Expect = 7e-31, Method: Composition-based stats. Identities = 49/227 (21%), Positives = 87/227 (38%), Gaps = 9/227 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD ++D ++G + L + ++ L + Sbjct: 7 LIVDDDKEIRDVLHVYLRNEGYHVLEAEDGLQALQLLQQHEVQLIILDVML--PKLDGIA 64 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121 IR S +P+I +S + +G DD V KP H E++ARV A RR Sbjct: 65 ACLQIRERSAIPIIMLSAKVESLDKITGLSTGADDYVTKPFHPVELMARVKAQLRRQNFL 124 Query: 122 -----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + G + + +V+G L E ILE L ANRG+ + ++I Sbjct: 125 SLREEEPSEIHIGDLSIHKKQHLVKVRGAAVSLTPIEFSILELLAANRGQIFSVSKIHEC 184 Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 ++ +N V HI +R+K+ + + +GY I+ Sbjct: 185 VWKEQTPFFSDNTVMVHIRNIREKIELVPRKPQYIKTVWGVGYKIEK 231 >gi|315037993|ref|YP_004031561.1| Response regulator [Lactobacillus amylovorus GRL 1112] gi|312276126|gb|ADQ58766.1| Response regulator [Lactobacillus amylovorus GRL 1112] Length = 240 Score = 138 bits (347), Expect = 7e-31, Method: Composition-based stats. Identities = 44/233 (18%), Positives = 90/233 (38%), Gaps = 15/233 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D V + F +G + + + I L + + Sbjct: 5 ILMVEDDNSVAEMMGMFFKKEGWEQDIAVDGVEAVDMFKENADKYDLITLDLNLPKKDGI 64 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ + +RA S P+I ++ S + G D+ V KP ++AR+ A++RR+ Sbjct: 65 QVAKEVRAISPTVPIIMLTARGSESDQVLGLGIGADEYVTKPFSPIALIARIKALHRRVM 124 Query: 121 VSNNRAETGPIRVFS------------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 + A + V L +E +L + + Sbjct: 125 MEEKPALLQEKKQDYDIETEHLKISKSRREVLFDAQPVTDLTPKEFDLLYTMAQKPKQVF 184 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ Q+ ++G ++ EE V++HI KLR+KL K+G + + +GY D Sbjct: 185 SRDQLLELVWG-YEYYGEERTVDAHIKKLRQKLE-KVGAKVIQTVWGVGYKFD 235 >gi|187777708|ref|ZP_02994181.1| hypothetical protein CLOSPO_01300 [Clostridium sporogenes ATCC 15579] gi|187774636|gb|EDU38438.1| hypothetical protein CLOSPO_01300 [Clostridium sporogenes ATCC 15579] Length = 230 Score = 138 bits (347), Expect = 7e-31, Method: Composition-based stats. Identities = 41/229 (17%), Positives = 88/229 (38%), Gaps = 11/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++D ++G ++ + + ++ ++ L Sbjct: 5 ILVVDDEKEIRDLLEINLINEGYNVFKARCGKEALEILEREEVNLMVLDIM--MPDMDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAA 114 E+ + R +P++ +S ++ +G DD V KP +H E+ R Sbjct: 63 EVCKRAREKYSIPILMLSAKVEDMDRIEGIMTGADDYVCKPFNHLELTVRIRALLRRAYF 122 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + +++ ++N + + + L RE IL L NRG+ + +IF Sbjct: 123 LNTKMQTTDNIIRIESMVIDKKQHKVMIDDNEIDLTAREFEILYLLANNRGRVFSAEEIF 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222 ++ N V H+S+LR K+ G + + +GY I+ Sbjct: 183 EKVWKER-YYQSNNTVMVHMSRLRDKIEKYMEGSKVIHTVWGVGYKIEK 230 >gi|254229759|ref|ZP_04923167.1| transcriptional activator protein CopR [Vibrio sp. Ex25] gi|151937726|gb|EDN56576.1| transcriptional activator protein CopR [Vibrio sp. Ex25] Length = 232 Score = 138 bits (347), Expect = 7e-31, Method: Composition-based stats. Identities = 37/227 (16%), Positives = 89/227 (39%), Gaps = 9/227 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G ++ + + +S D+ ++ L Sbjct: 5 ILIVEDEHKAGEYLQKGLIESGYVVDLVHDGVDGLYHATSEEYDLILLDIML--PKLDGW 62 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAI 115 ++ +R+ P+I ++ ++ + F+ G +D V KP R I Sbjct: 63 QVLNTLRSSGIHTPVIMLTAKEQVEDRVRGFELGANDYVVKPYAFAELLARIQNVFRHHI 122 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 ++ S + + R G+ L +E +LE LM G+ +++T I S Sbjct: 123 SAQVVASPQTLRVADLELDMIKRVATRAGQSMSLTAKEYALLELLMRKTGQVLSRTTIAS 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 ++ + + + NV++ + +LR K+ + + R +GY ++ Sbjct: 183 LVWDM-NFDSDTNVIDVAVKRLRSKVDKPFDKPLIHTVRGMGYKLEE 228 >gi|332185060|ref|ZP_08386809.1| response regulator [Sphingomonas sp. S17] gi|332014784|gb|EGI56840.1| response regulator [Sphingomonas sp. S17] Length = 236 Score = 138 bits (347), Expect = 7e-31, Method: Composition-based stats. Identities = 47/229 (20%), Positives = 95/229 (41%), Gaps = 11/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++ ++G +++ N+ + D+ ++ L G + Sbjct: 6 ILIVEDDPALRTLTARALQENGFAVKLANAAPEMWQALEVGQIDLILLDIML--PGTSGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 +L R +R + VP+I IS S + + G DD + KP RE++AR+ A+ RR + Sbjct: 64 DLCRQVRQRNAVPIIFISAKGSEVDRVVGLELGADDYLPKPFSTRELVARIRAVLRRGGL 123 Query: 122 SNNRAETGPIRVFSDGRDPEVQGE--------VFPLPRRERRILEYLMANRGKRVAKTQI 173 N E + DG + L E +L + N + VA+ ++ Sbjct: 124 ENAPGEREAGILGFDGWTANLPRRELMSPSGAQVELTGAEFDLLVAFLDNAQRVVARERL 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + ++ +S+LR+KL G P+ + R +GY ++ Sbjct: 184 IELSRARIG-DSSDRSIDVLVSRLRRKLSGAGGAAPIVTVRGVGYMLNV 231 >gi|162453349|ref|YP_001615716.1| DNA-binding response regulator [Sorangium cellulosum 'So ce 56'] gi|161163931|emb|CAN95236.1| DNA-binding response regulator [Sorangium cellulosum 'So ce 56'] Length = 235 Score = 138 bits (347), Expect = 7e-31, Method: Composition-based stats. Identities = 44/223 (19%), Positives = 84/223 (37%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++I+D ++ G + L R D+ ++ L G +V Sbjct: 4 ILVIEDEPALQKVLDYNLRQAGHEVLLAGQGGEGVRLAVDQRPDLVLLDLMLPDIPGTEV 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYR 117 + ++P++ +S + F+ G D V KP RE + V + Sbjct: 64 CRALQQSDGTQRIPVMIVSARGDEVDRIVGFELGAVDYVVKPFSVRELVLRVQAVLRRAK 123 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 E G +R+ V+ E L E ++L L R + +T + + Sbjct: 124 SSGDGERSIEFGCLRIDEGAHRVWVEREEVELTLLEFKLLVALYEARERVQTRTALLDGV 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G+ D ++ V++H+ +LR KLR D + + R +GY Sbjct: 184 WGI-DVSITTRTVDTHVKRLRDKLRRAG--DYIQTVRGIGYRF 223 >gi|254973991|ref|ZP_05270463.1| two-component response regulator [Clostridium difficile QCD-66c26] gi|255091378|ref|ZP_05320856.1| two-component response regulator [Clostridium difficile CIP 107932] gi|255313038|ref|ZP_05354621.1| two-component response regulator [Clostridium difficile QCD-76w55] gi|255515794|ref|ZP_05383470.1| two-component response regulator [Clostridium difficile QCD-97b34] gi|255648887|ref|ZP_05395789.1| two-component response regulator [Clostridium difficile QCD-37x79] gi|306519002|ref|ZP_07405349.1| two-component response regulator [Clostridium difficile QCD-32g58] Length = 233 Score = 138 bits (347), Expect = 7e-31, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 93/228 (40%), Gaps = 9/228 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++IDD + + +S + L R +S + ++ + Sbjct: 5 LIIDDDKELCALMKKCVEQENLSAITAHCGAEGLHLLDKNRHTLSLVILDIMMPDIDGFQ 64 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121 + + IR S +P+I ++ + G DD + KP E++ARV ++ RR + Sbjct: 65 VLKKIRETSNIPVIMLTAKNDEDDKVSGLRLGADDYLTKPFSINELMARVNSLIRRYTML 124 Query: 122 ------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + + R + L +E +L +L +N+G+ K QI++ Sbjct: 125 NPAFITDTDCIIINGMIIDKTNRIVSINNIPVQLTSKEFDLLAFLASNKGRVFTKKQIYT 184 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDW 222 ++ + A +++ + S ISKLRKK+ + + R +GY + Sbjct: 185 QVW-EEEYAFDDSNIMSFISKLRKKIEPDPNHPFYILTVRGVGYRFNK 231 >gi|262392415|ref|YP_003284269.1| putative two component response regulator transcription regulator protein [Vibrio sp. Ex25] gi|262336009|gb|ACY49804.1| putative two component response regulator transcription regulator protein [Vibrio sp. Ex25] Length = 230 Score = 138 bits (347), Expect = 7e-31, Method: Composition-based stats. Identities = 37/227 (16%), Positives = 89/227 (39%), Gaps = 9/227 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G ++ + + +S D+ ++ L Sbjct: 3 ILIVEDEHKAGEYLQKGLIESGYVVDLVHDGVDGLYHATSEEYDLILLDIML--PKLDGW 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAI 115 ++ +R+ P+I ++ ++ + F+ G +D V KP R I Sbjct: 61 QVLNTLRSSGIHTPVIMLTAKEQVEDRVRGFELGANDYVVKPYAFAELLARIQNVFRHHI 120 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 ++ S + + R G+ L +E +LE LM G+ +++T I S Sbjct: 121 SAQVVASPQTLRVADLELDMIKRVATRAGQSMSLTAKEYALLELLMRKTGQVLSRTTIAS 180 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 ++ + + + NV++ + +LR K+ + + R +GY ++ Sbjct: 181 LVWDM-NFDSDTNVIDVAVKRLRSKVDKPFDKPLIHTVRGMGYKLEE 226 >gi|255281730|ref|ZP_05346285.1| DNA-binding response regulator RegX3 [Bryantella formatexigens DSM 14469] gi|255267797|gb|EET61002.1| DNA-binding response regulator RegX3 [Bryantella formatexigens DSM 14469] Length = 234 Score = 138 bits (347), Expect = 7e-31, Method: Composition-based stats. Identities = 41/223 (18%), Positives = 87/223 (39%), Gaps = 5/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 I+D + +G +G + F++ + + D+ ++ L L Sbjct: 4 IFFIEDDEALAEGISFALEREGYQISCFSTCRAGREAIAERQPDLVLLDWNL--PDGDGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV--NKPIHHREILARVAAIYRRL 119 L R I + VP++ I+ + +SG DD + + + R Sbjct: 62 ALCREIAGTAGVPVLMITARDMEIDQVMCLESGADDYIAKPFSLAVLKARIAALLRRRGG 121 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + S+ +G IR+ ++ L E ++L+Y + N+ + + K QI + ++ Sbjct: 122 QDSSGWLISGDIRLQEKEMKAYLKDRELDLSLTEFKLLKYFLENKNQVLLKEQILARVWD 181 Query: 180 LFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221 VEEN + +I +LR K+ + + + +GY + Sbjct: 182 SGGSFVEENTLMVNIRRLRTKVEEDASHPRYIKTVHGMGYLWE 224 >gi|212697532|ref|ZP_03305660.1| hypothetical protein ANHYDRO_02105 [Anaerococcus hydrogenalis DSM 7454] gi|212675531|gb|EEB35138.1| hypothetical protein ANHYDRO_02105 [Anaerococcus hydrogenalis DSM 7454] Length = 233 Score = 138 bits (347), Expect = 7e-31, Method: Composition-based stats. Identities = 40/229 (17%), Positives = 81/229 (35%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +DG S+ + + L S D+ ++ L Sbjct: 8 IIIVDDEKEIADLLELYLTNDGFSVSKAFNAKDALDLVESENFDLMILDIMLE--DMDGF 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH--------REILARVA 113 + + IR P+I ++ + G DD + KP + ++ Sbjct: 66 SVCKKIREKHYFPIIMLTSRIDSNDKILGLTMGADDYITKPFNPLEVIARVKTQLRRSQK 125 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 N + + + + + L E I+ YL N+GK V+ ++ Sbjct: 126 YNKTEKIQDNETYDIRGLLIDKKSHKCFLYDKQIQLTPIEFEIIWYLCKNQGKVVSSEEL 185 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 F I+ N V +HI ++R K+ + + + +GY I+ Sbjct: 186 FENIWKEKYLD-NNNTVMAHIGRIRDKMNDSGRNPKFIKTVWGVGYEIE 233 >gi|327183273|gb|AEA31720.1| response regulator [Lactobacillus amylovorus GRL 1118] Length = 238 Score = 138 bits (347), Expect = 7e-31, Method: Composition-based stats. Identities = 44/233 (18%), Positives = 90/233 (38%), Gaps = 15/233 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D V + F +G + + + I L + + Sbjct: 3 ILMVEDDNSVAEMMGMFFKKEGWEQDIAVDGVEAVDMFKENADKYDLITLDLNLPKKDGI 62 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ + +RA S P+I ++ S + G D+ V KP ++AR+ A++RR+ Sbjct: 63 QVAKEVRAISPTVPIIMLTARGSESDQVLGLGIGADEYVTKPFSPIALIARIKALHRRVM 122 Query: 121 VSNNRAETGPIRVFS------------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 + A + V L +E +L + + Sbjct: 123 MEEKPALPQEKKQDYDIETEHLKISKSRREVLFDAQPVIDLTPKEFDLLYTMAQKPKQVF 182 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ Q+ ++G ++ EE V++HI KLR+KL K+G + + +GY D Sbjct: 183 SRDQLLELVWG-YEYYGEERTVDAHIKKLRQKLE-KVGAKVIQTVWGVGYKFD 233 >gi|260902480|ref|ZP_05910875.1| transcriptional activator protein CopR [Vibrio parahaemolyticus AQ4037] gi|308109776|gb|EFO47316.1| transcriptional activator protein CopR [Vibrio parahaemolyticus AQ4037] Length = 230 Score = 138 bits (347), Expect = 7e-31, Method: Composition-based stats. Identities = 37/227 (16%), Positives = 89/227 (39%), Gaps = 9/227 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G ++ + + +S D+ ++ L Sbjct: 3 ILIVEDEHKAGEYLQKGLIESGYVVDLVHDGVDGLYHATSEEYDLILLDIML--PKLDGW 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAI 115 ++ +R+ P+I ++ ++ + F+ G +D V KP R I Sbjct: 61 QVLNTLRSSGIHTPVIMLTAKEQVEDRVRGFELGANDYVVKPYAFAELLARVQNVFRHHI 120 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 ++ S + + R G+ L +E +LE LM G+ +++T I S Sbjct: 121 AAQVVASPQTLRVADLELDMIKRVATRAGQSMSLTAKEYALLELLMRKTGQVLSRTTIAS 180 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 ++ + + + NV++ + +LR K+ + + R +GY ++ Sbjct: 181 LVWDM-NFDSDTNVIDVAVKRLRSKVDKPFDKPLIHTVRGMGYKLEE 226 >gi|256842825|ref|ZP_05548313.1| response regulator [Lactobacillus crispatus 125-2-CHN] gi|256848811|ref|ZP_05554245.1| response regulator [Lactobacillus crispatus MV-1A-US] gi|312977655|ref|ZP_07789402.1| DNA-binding response regulator ResD [Lactobacillus crispatus CTV-05] gi|256614245|gb|EEU19446.1| response regulator [Lactobacillus crispatus 125-2-CHN] gi|256714350|gb|EEU29337.1| response regulator [Lactobacillus crispatus MV-1A-US] gi|310895394|gb|EFQ44461.1| DNA-binding response regulator ResD [Lactobacillus crispatus CTV-05] Length = 240 Score = 138 bits (347), Expect = 7e-31, Method: Composition-based stats. Identities = 45/233 (19%), Positives = 90/233 (38%), Gaps = 15/233 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D V + F +G + + + I L + + Sbjct: 5 ILMVEDDTSVAEMMGMFFKKEGWQQDIAVDGVEAVDMFKKNADKYDLITLDLNLPKKDGI 64 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ + +RA S P+I ++ S + G D+ V KP ++AR+ A++RR+ Sbjct: 65 QVAKEVRAISPTVPIIMLTARGSESDQVLGLGIGADEYVTKPFSPIALIARIKALHRRVM 124 Query: 121 VSNNRAETGPIRVFS------------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 + A T V L +E +L + + Sbjct: 125 MEEEPAHTQEDNQDYEITTDHLKISKNRREVLFDNQPVMGLTPKEFDLLYTMAQKPKQVF 184 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ Q+ ++G ++ EE V++HI KLR+KL K+G + + +GY D Sbjct: 185 SRDQLLELVWG-YEYYGEERTVDAHIKKLRQKLE-KVGAKVIQTVWGVGYKFD 235 >gi|219854217|ref|YP_002471339.1| hypothetical protein CKR_0874 [Clostridium kluyveri NBRC 12016] gi|219567941|dbj|BAH05925.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 235 Score = 138 bits (347), Expect = 7e-31, Method: Composition-based stats. Identities = 46/226 (20%), Positives = 89/226 (39%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + + ++ + E S + ++ L + Sbjct: 11 ILIVEDDEEINNLIYNTLKREKYNMIQAFNGEDAINKYHSDNFQLVILDLML--PYIDGI 68 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR S VP+I +S + G DD + KP RE+ ARV + RR Sbjct: 69 EVLRKIRESSTVPIIILSAKDQETDRIIGLGMGADDYIVKPFSIRELTARVKSQLRRYIS 128 Query: 122 SNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 N PI ++D + + L +E ++L+ + N + K QIF+ Sbjct: 129 YNKEYSKNPILQYADLKLNTLNYKVSKKNKELNLTPKEFQLLKLFLENPDRVFTKAQIFN 188 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++ ++N V HI +LR K+ + + + +GY + Sbjct: 189 NVW-ENKYIHDDNTVMVHIKRLRNKIEDTPNNPKYISTVWGIGYKL 233 >gi|324326833|gb|ADY22093.1| DNA-binding response regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 215 Score = 138 bits (347), Expect = 7e-31, Method: Composition-based stats. Identities = 38/220 (17%), Positives = 96/220 (43%), Gaps = 11/220 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++ DD + A F +G + E + + D++ ++ + Sbjct: 4 LIADDEQDMLRILKAYFEKEGFEVFLAKDGEEALQIFYDEKIDLAILDWM--MPKHSGIT 61 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + I+ +S V ++ ++ + L SG D+ V KP H ++ R ++L Sbjct: 62 VCQEIKKNSSVKVLMLTAKSESEDELAALQSGADEYVKKPFHPGVLITRA----KKLIQH 117 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 ++ + +++ + + + E ++++ + ++G + + ++ ++G FD Sbjct: 118 DDVIQVQDLKIDFTKNKVYKNDKELDITKTELQLIKCFLNHKGMILTRKKLLDIVWG-FD 176 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 EE V++H+ +LRKK+ + + + R LGYS++ Sbjct: 177 YFGEERTVDTHVRRLRKKVGE----NIIKTHRGLGYSLEE 212 >gi|296271045|ref|YP_003653677.1| winged helix family two component transcriptional regulator [Thermobispora bispora DSM 43833] gi|296093832|gb|ADG89784.1| two component transcriptional regulator, winged helix family [Thermobispora bispora DSM 43833] Length = 224 Score = 138 bits (347), Expect = 7e-31, Method: Composition-based stats. Identities = 45/221 (20%), Positives = 92/221 (41%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D V+ G G S+ + E + R ++ ++ L G + Sbjct: 4 ILLVEDDPSVRTGLELALTRQGHSVTSCATGEEALDHVRTRRPEIVILDVML--PGIDGI 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120 E+ R IR +P+I ++ + ++G DD V KP+ R + AR+ AI R Sbjct: 62 EVCRRIRKIDSLPVILLTALGDDLDVVVGLEAGADDYVVKPVQPRVLDARIRAILRRVES 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 V +R G + + ++G+ L E R+L L+ +R K + + + ++ Sbjct: 122 VPADRLTFGDLVIDRGALKVTLKGKEVHLTPTELRLLLELVRHRDKVLNRRYLLRTVWD- 180 Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + +V++ + ++R K+ + + R GY Sbjct: 181 HGHVGDSRLVDTCVQRIRAKIEPVPSEPRYIHTVRGFGYRF 221 >gi|225026937|ref|ZP_03716129.1| hypothetical protein EUBHAL_01193 [Eubacterium hallii DSM 3353] gi|224955748|gb|EEG36957.1| hypothetical protein EUBHAL_01193 [Eubacterium hallii DSM 3353] Length = 248 Score = 138 bits (347), Expect = 7e-31, Method: Composition-based stats. Identities = 47/229 (20%), Positives = 86/229 (37%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD + D ++ + F S D++ ++ L Sbjct: 22 ILIIDDEQDIADLLEVYLKNENYVVYKFYCATDAMSCIESGDIDLAILDIML--PDMNGF 79 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L ++IR P+I ++ + G DD V KP E++ARV A RR K Sbjct: 80 SLCQLIRKKYTYPIIMLTAKIEETDKITGLTLGADDYVTKPFRPLEVVARVKAQLRRYKK 139 Query: 122 SNNRAE---------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + + + + GE L E IL L+++ G V+ + Sbjct: 140 YSPGIITEKIPSELSYNKLCLNVQTHECLLDGEPVSLTPTEFSILHVLLSSAGNVVSIEE 199 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 +F A++ + + + HI LR+KL + + + +GY I Sbjct: 200 LFHAVWKDEYYSKNSSTITVHIRHLREKLNDTSDTPQYIKTIWGVGYKI 248 >gi|126651205|ref|ZP_01723415.1| two-component response regulator [Bacillus sp. B14905] gi|126592043|gb|EAZ86109.1| two-component response regulator [Bacillus sp. B14905] Length = 225 Score = 138 bits (347), Expect = 7e-31, Method: Composition-based stats. Identities = 42/222 (18%), Positives = 99/222 (44%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A +++ ++G+ + +S + D+ ++ Sbjct: 4 LLMVDDDAHIRELVKVFLQNEGLDVIEATDGVDALSKLASEKVDMVIMDIM--MPNMDGW 61 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L IR+++ P++ ++ + F G DD + KP E++ RV +I +R + Sbjct: 62 ALCEEIRSYNTDLPILMLTAKGETAQKVKGFHLGTDDYLVKPFEPAELIVRVKSILKRYR 121 Query: 121 VSNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++ ++ + ++ GE+ L +E +L L + GK ++ Q+ I+G Sbjct: 122 IALSQVVEAGNVKLDRHTHEVDLNGEIIVLRLKEFELLFTLASYVGKTFSREQLIEEIWG 181 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +D +E V+ HI ++R++ ++ + + R LGY ++ Sbjct: 182 -YDYEGDERTVDVHIKRIRERFPQEISGFAIRTIRGLGYRLE 222 >gi|120401218|ref|YP_951047.1| two component transcriptional regulator [Mycobacterium vanbaalenii PYR-1] gi|119954036|gb|ABM11041.1| two component transcriptional regulator, winged helix family [Mycobacterium vanbaalenii PYR-1] Length = 244 Score = 138 bits (347), Expect = 7e-31, Method: Composition-based stats. Identities = 46/222 (20%), Positives = 96/222 (43%), Gaps = 7/222 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61 +++DD V+ G + + + L SS D ++ + G V+ Sbjct: 22 LMVDDDPDVRTSVARGLRHSGFDVRVAATGKEALRLLSSESHDALVLDVQMPELDGVAVV 81 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 R + + +P+ +S ++ + ++G DD + KP E++AR+ Sbjct: 82 TALRALG--NDIPICVLSARDTVNDRIAGLEAGADDYLTKPFDLGELVARLHALLRRAHH 139 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 +++ G + + + R V GE L +RE +L L N G +++ ++ ++ Sbjct: 140 SDPTSDTMTVGSLTIDTARRLVFVAGERVELTKREFDLLAALAENAGVVLSRQRLLELVW 199 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G +D V+ NV + +S LR+KL + + + R +GY + Sbjct: 200 G-YDFDVDTNVADVFVSYLRRKLEREGLPRVIHTVRGIGYVL 240 >gi|119855088|ref|YP_935693.1| two component transcriptional regulator [Mycobacterium sp. KMS] gi|145225906|ref|YP_001136560.1| two component transcriptional regulator [Mycobacterium gilvum PYR-GCK] gi|119697806|gb|ABL94878.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. KMS] gi|145218369|gb|ABP47772.1| two component transcriptional regulator, winged helix family [Mycobacterium gilvum PYR-GCK] Length = 246 Score = 138 bits (347), Expect = 7e-31, Method: Composition-based stats. Identities = 51/231 (22%), Positives = 94/231 (40%), Gaps = 16/231 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + + + + +S DV ++ L G +E Sbjct: 15 LVVDDEVPLAEVVASYLRREQFDVSLAHSGADALAQAREIDPDVVILDLAL--PGIDGVE 72 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120 + R +R S ++ ++ + T+ G DD V KP RE++AR+ A+ RR + Sbjct: 73 VCRQLRTFSDAYVVMLTARDTEMDTIVGLSVGADDYVTKPFSPRELVARIRAMLRRPRTV 132 Query: 121 ----------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 GP+ + GR + E L R E IL L + ++ Sbjct: 133 ATPTSAATAADEPPPRAFGPLSIDVAGRQVFIDDEPVLLTRTEFDILAALSSRPAVVFSR 192 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220 Q+ A++G +++V+ HI LR+KL + G V + R +GY + Sbjct: 193 RQLLEAVWGDS-WGGNKHLVDVHIGHLRRKLSDDPAGPRYVITVRGVGYRM 242 >gi|229112671|ref|ZP_04242207.1| DNA-binding response regulator [Bacillus cereus Rock1-15] gi|228670803|gb|EEL26111.1| DNA-binding response regulator [Bacillus cereus Rock1-15] Length = 224 Score = 138 bits (347), Expect = 7e-31, Method: Composition-based stats. Identities = 42/226 (18%), Positives = 85/226 (37%), Gaps = 12/226 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +++ +G + + DV ++ L Sbjct: 4 ILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALEKWNEG-PDVLILDVML--PDTDGY 60 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAI 115 EL R+ R +P++ ++ + L G DD V KP ++ R Sbjct: 61 ELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRVK 120 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 VS+ E G I + R V G+ L RE + + ++N + + ++ Sbjct: 121 KTEAAVSHEVIEAGEIVICPKERKVHVGGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 180 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G F+ V+ + +LRKKL + + + +GY +D Sbjct: 181 KVWG-FEYIGNTRAVDIMVQRLRKKLGTSG--EYIKTIYGVGYKLD 223 >gi|261408223|ref|YP_003244464.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261284686|gb|ACX66657.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] Length = 231 Score = 138 bits (347), Expect = 7e-31, Method: Composition-based stats. Identities = 34/226 (15%), Positives = 81/226 (35%), Gaps = 14/226 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + +G ++E + S DV ++ + Sbjct: 5 LVVDDEISISSAVAYALRREGYTVETAGDGQEALERVESFDPDVMVLDVM--MPKLSGYD 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARVA 113 + R + + ++ ++ + + + G DD + KP RE +R Sbjct: 63 VCRRLGDRQRPAILLLTVKDDIVDKVLGLELGADDYMTKPFDMREIIARVKALSRRSRTP 122 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + + + + R +G+ L +E ++ L N + ++ + Sbjct: 123 EAAGKQALETHVIRIAGLTINLLNRTIHAEGKPLELTPKEFDLMALLARNPERVYSREAL 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 ++ + D A V+ H+ +LRKKL N + + + +GY Sbjct: 183 LEQVWDM-DFAGGTRTVDIHVQRLRKKLGN--QHEVIQTVYGIGYK 225 >gi|325661025|ref|ZP_08149652.1| hypothetical protein HMPREF0490_00384 [Lachnospiraceae bacterium 4_1_37FAA] gi|325472532|gb|EGC75743.1| hypothetical protein HMPREF0490_00384 [Lachnospiraceae bacterium 4_1_37FAA] Length = 223 Score = 138 bits (347), Expect = 7e-31, Method: Composition-based stats. Identities = 38/223 (17%), Positives = 81/223 (36%), Gaps = 6/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + G + + ++ L Sbjct: 4 ILIVEDDETIARLLREHLEKWGYQARCAEDFKQVAKEFKEYAPHLVLMDIGL--PFYNGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 IR S VP++ +S + G DD V KP + ++ Sbjct: 62 YWCTEIRKTSNVPILFLSSMSDNMNIVMAIQMGGDDFVTKPFDLNVLTVKIQALLRRTYA 121 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + S + E + + Q + L + + +IL+ LM G V + +I ++ Sbjct: 122 FQGSASVMEHKGVMLNLSDASVTFQSQKIELTKNDYKILQILMERAGTIVKREEIMQRLW 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 DE +++N + ++++LRKKL + + +K+ +GY I+ Sbjct: 182 -ESDEFIDDNTLTVNMTRLRKKLEELGVQEFIKTKKGIGYIIE 223 >gi|310827869|ref|YP_003960226.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium limosum KIST612] gi|308739603|gb|ADO37263.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Eubacterium limosum KIST612] Length = 241 Score = 138 bits (347), Expect = 7e-31, Method: Composition-based stats. Identities = 44/230 (19%), Positives = 90/230 (39%), Gaps = 12/230 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD + + +G + ++ + ++ L Sbjct: 11 ILIIDDDVELCSLLLRCLEREGYEVCAAHTGAAGLNRLDEKEAVLVILDVML--PEMSGF 68 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + +R +P++ ++ S + + +G DD + KP E +ARV ++ RR V Sbjct: 69 AVLSELRKTKSIPVLMLTARDSEKDKVQGLKTGADDYLTKPFSINEFMARVESLIRRFTV 128 Query: 122 SNNRAETGPIR--------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 N + R VQ + L +E +L +L N G+ K Q+ Sbjct: 129 LNRENPCKEKSLIFKGGLLINPVERSVSVQEKEIELTNKEFDLLYFLAKNPGQVFTKKQL 188 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222 ++ I+ D A ++ + ++ISKLR+K+ K + + +GY + Sbjct: 189 YTQIW-QEDYAFDDGNMMAYISKLRRKIEKKEKETAYIQTIWGVGYRFNK 237 >gi|298247426|ref|ZP_06971231.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297550085|gb|EFH83951.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 239 Score = 138 bits (347), Expect = 7e-31, Method: Composition-based stats. Identities = 40/227 (17%), Positives = 84/227 (37%), Gaps = 12/227 (5%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + + DD + + + + + E + D+ ++ Sbjct: 7 VILTADDDSQLLRLVSRNLELEDYEVLTASDGEQALAIVEKQLPDLILLDVM--MPRVDG 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112 + + IR S VP+I I+ + + D G DD + KP E + Sbjct: 65 FTVCKHIREFSMVPIIIITARGQDRDKVKGLDLGADDYLTKPFSIEELLARVRAVLRRSR 124 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + + +A G + + + L E R+L YL N G+ V Q Sbjct: 125 FSASEPGQSARMQASIGELTIDYSQHLIIKGTKELSLTPIEYRLLAYLAQNMGRIVTHDQ 184 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218 + ++G + E ++++ +I++LR+KL + + +K +GY Sbjct: 185 LLEHVWG-SEYIGESHMLQVNINRLRRKLEPDPSHPRYLLTKVGIGY 230 >gi|294790736|ref|ZP_06755894.1| DNA-binding response regulator MtrA [Scardovia inopinata F0304] gi|294458633|gb|EFG26986.1| DNA-binding response regulator MtrA [Scardovia inopinata F0304] Length = 241 Score = 138 bits (347), Expect = 7e-31, Method: Composition-based stats. Identities = 38/228 (16%), Positives = 85/228 (37%), Gaps = 16/228 (7%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + +G + + +S + D+ ++ L LE Sbjct: 15 LVVEDEPTLATAIGQRLASEGWNTRITGDGASAVHIAASYKPDLILMDIML--PVMDGLE 72 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA--------- 113 + I A VP++ ++ + +G DD + KP RE++AR Sbjct: 73 ATKRITAARPVPVLMLTARDDETDKVIGLGAGADDYMTKPFSMRELVARCKALLRRVERA 132 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + + E + + R + G+ L E +L L + + + ++ Sbjct: 133 KVIAKNSENEKVLEFNGLTIDPAQRLVLLNGQEVHLTPTEFDLLATLARKPKQVLTREKL 192 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ D + V+SH+ LR KL G + + + +GY+ + Sbjct: 193 LEEVWDWVDASG-TRTVDSHVKALRHKL----GSEMIRTVHGVGYAFE 235 >gi|229173313|ref|ZP_04300857.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus MM3] gi|228610007|gb|EEK67285.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus MM3] Length = 224 Score = 138 bits (347), Expect = 7e-31, Method: Composition-based stats. Identities = 50/223 (22%), Positives = 93/223 (41%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + D +G ++ D+ ++ L G L Sbjct: 4 ILIIEDEESLADFLELELKYEGYKVDIQFDGRKGLETALEINYDLILLDLML--PGLNGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +RA P+I ++ S+ + DSG DD + KP E+LAR+ I+RR + Sbjct: 62 EVCRRLRATKNTPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARMRVIFRREEH 121 Query: 122 SNNRAETGPIRVF----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 N+ + + R E L +E +L M N + + + + + Sbjct: 122 IENKHVSSLTFKDLQLQIESRTITKGNEEIELTNKEFELLLMFMKNINRVLTRDVLLDQV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G +D VE N+V+ ++ LR KL + + + + R GY + Sbjct: 182 WG-YDAMVETNIVDVYVRYLRNKLHSVDKEEYIQTVRGAGYIM 223 >gi|23336525|ref|ZP_00121738.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bifidobacterium longum DJO10A] gi|23465569|ref|NP_696172.1| response regulator of two-component system [Bifidobacterium longum NCC2705] gi|189439616|ref|YP_001954697.1| putative response regulator [Bifidobacterium longum DJO10A] gi|227546166|ref|ZP_03976215.1| response regulator [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239621792|ref|ZP_04664823.1| response regulator [Bifidobacterium longum subsp. infantis CCUG 52486] gi|296453867|ref|YP_003661010.1| winged helix family two component transcriptional regulator [Bifidobacterium longum subsp. longum JDM301] gi|312133015|ref|YP_004000354.1| response regulator [Bifidobacterium longum subsp. longum BBMN68] gi|317481881|ref|ZP_07940908.1| response regulator receiver domain-containing protein [Bifidobacterium sp. 12_1_47BFAA] gi|322688823|ref|YP_004208557.1| two-component response regulator [Bifidobacterium longum subsp. infantis 157F] gi|322690811|ref|YP_004220381.1| two-component response regulator [Bifidobacterium longum subsp. longum JCM 1217] gi|23326235|gb|AAN24808.1| response regulator of two-component system [Bifidobacterium longum NCC2705] gi|189428051|gb|ACD98199.1| Putative response regulator [Bifidobacterium longum DJO10A] gi|227213147|gb|EEI81019.1| response regulator [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239514983|gb|EEQ54850.1| response regulator [Bifidobacterium longum subsp. infantis CCUG 52486] gi|291517115|emb|CBK70731.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bifidobacterium longum subsp. longum F8] gi|296183298|gb|ADH00180.1| two component transcriptional regulator, winged helix family [Bifidobacterium longum subsp. longum JDM301] gi|311774002|gb|ADQ03490.1| Putative response regulator [Bifidobacterium longum subsp. longum BBMN68] gi|316916672|gb|EFV38067.1| response regulator receiver domain-containing protein [Bifidobacterium sp. 12_1_47BFAA] gi|320455667|dbj|BAJ66289.1| two-component response regulator [Bifidobacterium longum subsp. longum JCM 1217] gi|320460159|dbj|BAJ70779.1| two-component response regulator [Bifidobacterium longum subsp. infantis 157F] Length = 240 Score = 138 bits (347), Expect = 7e-31, Method: Composition-based stats. Identities = 40/228 (17%), Positives = 81/228 (35%), Gaps = 16/228 (7%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + +G + S R D+ ++ L LE Sbjct: 16 LVVEDEPTLATAIAQRITAEGWTARVAGDGASAVQAASQLRPDLVIMDIML--PVMDGLE 73 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA--------- 113 + I A VP++ ++ + +G DD + KP RE++AR Sbjct: 74 ATKRIVAERPVPVLILTARDDEADKVIGLGAGADDYMTKPFSMRELIARCKALLRRVERA 133 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + + + G + + R V GE L E +L L + + ++ Sbjct: 134 KVIAKNSENEKLLDFGSMVIDPAQRIVTVNGEQVHLTPTEFDLLATLARRPKSVLTREKL 193 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ D + V+SH+ LR KL + + +GY+ + Sbjct: 194 LEEVWDWVDASG-TRTVDSHVKALRHKLGADT----IRTVHGVGYAFE 236 >gi|315647964|ref|ZP_07901065.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] gi|315276610|gb|EFU39953.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] Length = 236 Score = 138 bits (347), Expect = 7e-31, Method: Composition-based stats. Identities = 44/222 (19%), Positives = 90/222 (40%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + G DG S + + + + + + + L Sbjct: 12 ILLVEDDKTIASGLEYSLQQDGFSTVLCHDVASAQRVLAEDIDQFALCLFDLQLPDGSGY 71 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118 EL ++++ +P+I ++ + D G DD + KP RE + V Y++ Sbjct: 72 ELCKLVKERRDIPVIFLTVIDDEVNVVMGLDMGADDYITKPFRVRELLSRIKSVLRRYQK 131 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + IR+ + +G PL E R+L + G+ + + Q+ I+ Sbjct: 132 PSHTRAIIDIDHIRINTLEGKVHKKGTEIPLTALEYRLLLIFGNHIGQVLTRNQLLEQIW 191 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219 + + V +N + +I +LR+KL + G + + R LGY Sbjct: 192 DVAGDFVNDNTLTVYIKRLREKLEDDPGHPTLIKTVRGLGYK 233 >gi|298489232|ref|ZP_07007250.1| DNA-binding heavy metal response regulator [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298156251|gb|EFH97353.1| DNA-binding heavy metal response regulator [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 224 Score = 138 bits (347), Expect = 7e-31, Method: Composition-based stats. Identities = 38/223 (17%), Positives = 87/223 (39%), Gaps = 5/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G ++ + +L DV ++ L Sbjct: 3 ILVVEDEPKTAEYMHQGLTESGYIVDIAATGLDGLYLAQHQAYDVVILDVNL--PEMDGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119 E+ +R ++ ++ L+ + + G DD + KP E+ R Sbjct: 61 EVLSRLRKTVSTRVMMLTARGRLEEKVKGLELGADDYLVKPFEFPELLARVRTLMRRSEQ 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++ + G + + + L +E +L LM + G+ +++TQI S ++ Sbjct: 121 TTTSKVLQVGDLELDQGRHRAFRGSQRIDLTTKEFALLHLLMRHSGEVMSRTQIISLVWD 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + + + NVVE I +LR K+ + + + R +GY ++ Sbjct: 181 M-NFDCDTNVVEVSIRRLRAKIDDPFETKLIHTLRGVGYVLEV 222 >gi|296137843|ref|YP_003645086.1| two component transcriptional regulator, winged helix family [Tsukamurella paurometabola DSM 20162] gi|296025977|gb|ADG76747.1| two component transcriptional regulator, winged helix family [Tsukamurella paurometabola DSM 20162] Length = 232 Score = 138 bits (347), Expect = 7e-31, Method: Composition-based stats. Identities = 46/223 (20%), Positives = 90/223 (40%), Gaps = 8/223 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++I+D + +G + E L V ++ L LE Sbjct: 10 LVIEDEPALGRLVRDYLTREGFDVTVAMDGERGLQLARELDPAVIILDIGL--PRIDGLE 67 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +R S ++ ++ + G DD + KP RE++ARV A+ RR + Sbjct: 68 VCRSLRRFSDAYVLMLTARGDETDKIVGLSVGADDYLVKPFSPREVVARVRAMLRRPRRM 127 Query: 123 NNRAETGPIR----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + A T + GR+ + + L E +L L + +++Q+ A++ Sbjct: 128 PDGAGTDRTYGDLAIDLLGREVRIGEKEIDLTATEFDVLAVLARSPNVAFSRSQLIEAVW 187 Query: 179 GLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220 G +E +V+ H+ ++R+KL + V + R +GY + Sbjct: 188 GAG-WVGDERLVDVHVGRVRRKLGDDAGDPRYVRTVRGVGYRM 229 >gi|228988485|ref|ZP_04148575.1| DNA-binding response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228771253|gb|EEM19729.1| DNA-binding response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 223 Score = 138 bits (347), Expect = 7e-31, Method: Composition-based stats. Identities = 43/226 (19%), Positives = 91/226 (40%), Gaps = 12/226 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +++ +G + + +V ++ L Sbjct: 3 ILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALEKWNEG-PNVLILDVML--PDTDGY 59 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL R+ R +P++ ++ + L G DD V KP ++ E++ RV + RR+K Sbjct: 60 ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRVK 119 Query: 121 VSNNRAETG-----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 I++ R V G+ L RE + + ++N + + ++ Sbjct: 120 KKEVTVSHEVIGAGEIKICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 179 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G F+ V+ + +LRKKL N + + + +GY +D Sbjct: 180 KVWG-FEYIGNTRAVDIMVQRLRKKLGNSG--EYIKTIYGVGYKLD 222 >gi|268591078|ref|ZP_06125299.1| transcriptional activator protein Irlr [Providencia rettgeri DSM 1131] gi|291313885|gb|EFE54338.1| transcriptional activator protein Irlr [Providencia rettgeri DSM 1131] Length = 223 Score = 138 bits (347), Expect = 7e-31, Method: Composition-based stats. Identities = 42/220 (19%), Positives = 99/220 (45%), Gaps = 3/220 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D + + G ++ N + + ++ L G Sbjct: 3 ILLIEDHLKTQVWVKNGLEEAGFLVDVTNDGRDGLYFALENSYQLVILDIML--PGMNGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ +I+R +P+I ++ ++ + + G +D + KP E+LARV + + Sbjct: 61 EILKILRTAKNIPVICLTARDAVDDRIKGLELGANDYLVKPFSFSELLARVKNQLKINQP 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 ++ +++ D E G+ L R+E +L + + + + + +T I S ++G+ Sbjct: 121 ASTTITIADLKIDLTRHDVERAGKKITLTRQEFSLLLFFVLHCDEILPRTLIASEVWGI- 179 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D + N+++ I +LRKK+ ++ +++ R +GY ++ Sbjct: 180 DFESDTNIIDVAIRRLRKKIDDEFDVKLIETIRGMGYRLN 219 >gi|145221065|ref|YP_001131743.1| two component transcriptional regulator [Mycobacterium gilvum PYR-GCK] gi|315441964|ref|YP_004074843.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Mycobacterium sp. Spyr1] gi|145213551|gb|ABP42955.1| two component transcriptional regulator, winged helix family [Mycobacterium gilvum PYR-GCK] gi|315260267|gb|ADT97008.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Mycobacterium sp. Spyr1] Length = 248 Score = 138 bits (347), Expect = 7e-31, Method: Composition-based stats. Identities = 46/222 (20%), Positives = 95/222 (42%), Gaps = 7/222 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61 +++DD V+ G + + + L SS D ++ + G V+ Sbjct: 26 LMVDDDPDVRTSVARGLRHSGFDVRVAATGKEALRLLSSESHDALVLDVQMPELDGVAVV 85 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 R + + +P+ +S ++ + ++G DD + KP E++AR+ Sbjct: 86 TALRALG--NDIPICVLSARDTVNDRIAGLEAGADDYLTKPFDLGELVARLHALLRRAHH 143 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 +++ G + + + R V GE L +RE +L L N G +++ ++ ++ Sbjct: 144 SDPTSDTMTVGSLTIDTARRLVFVAGERVELTKREFDLLAALAENAGVVLSRQRLLELVW 203 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G +D V+ NV + +S LR+KL + + R +GY + Sbjct: 204 G-YDFDVDTNVADVFVSYLRRKLERDGLPRVIHTVRGIGYVL 244 >gi|315924541|ref|ZP_07920760.1| DNA-binding response regulator [Pseudoramibacter alactolyticus ATCC 23263] gi|315622071|gb|EFV02033.1| DNA-binding response regulator [Pseudoramibacter alactolyticus ATCC 23263] Length = 228 Score = 138 bits (347), Expect = 7e-31, Method: Composition-based stats. Identities = 37/225 (16%), Positives = 88/225 (39%), Gaps = 10/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + E + D+ ++ L + Sbjct: 5 ILVVDDEKAIVDLIKMELTFEGYQVITAFDGEEAVAKSFESYPDLIVLDIML--PKKNGY 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115 ++ + I+ P+I ++ + + + G DD + KP +RE+ R A Sbjct: 63 DVCKEIQQKLDTPIILLTAKTDIVDKVLGLELGADDYLTKPFDNRELLARIKAHLRRAKK 122 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + + GP+ + D R ++ L +E +L L ++ + + ++ Sbjct: 123 ITNADMQSAKIINGPLCIIPDERIVKLDDHEIHLTPKEFDLLLLLASHLEQVFPRDELLK 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I+G +D + V+ HI ++R+K+ + + +GY + Sbjct: 183 EIWG-YDYYGDTRTVDMHIQRIRRKIDIHPN-KLIQTVFGIGYKM 225 >gi|298242241|ref|ZP_06966048.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297555295|gb|EFH89159.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 224 Score = 138 bits (347), Expect = 7e-31, Method: Composition-based stats. Identities = 42/222 (18%), Positives = 93/222 (41%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A ++ ++ +++ E + D+ ++ L + Sbjct: 3 ILIVEDEAKIRHFLRQGLLEESYAVDTAVDGEEALYKLDINEYDLVLLDIML--PKVNGI 60 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119 + + +R S P++ ++ + + D+G DD + KP E+ AR+ A R Sbjct: 61 AVCKALREKSSSPPILLLTAKDGVADKVLGLDAGADDYLTKPFSFDELTARIRALFRRGK 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 K G + + + + + L RE +LEY + N + KTQI ++ Sbjct: 121 KADATLLTIGDLSLDPATKTVKRGEQSIVLTTREYALLEYFLRNPNILLTKTQILEHVWD 180 Query: 180 LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++ N+VE+++ LRKK++ + + + R GY + Sbjct: 181 -YNFEGLSNIVETYVKYLRKKIKTAPNAPELIHTMRGSGYIL 221 >gi|229589199|ref|YP_002871318.1| two-component system response regulator [Pseudomonas fluorescens SBW25] gi|229361065|emb|CAY47928.1| two-component system, response regulator [Pseudomonas fluorescens SBW25] Length = 232 Score = 138 bits (347), Expect = 7e-31, Method: Composition-based stats. Identities = 47/223 (21%), Positives = 92/223 (41%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD ++ G + + + ++ D+ ++ L Sbjct: 10 ILVIDDEPQIRKFLRISLASQGYKVIEAGTGTEGLAQAALSKPDLLVLDLGL--PDMDGQ 67 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R R S VP++ +S S ++ DSG +D V KP +E LARV A+ R+ Sbjct: 68 QVLREFREWSTVPVLVLSVRASEGQKVEALDSGANDYVTKPFGIQEFLARVRALLRQAPA 127 Query: 122 SNNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + GP+ V R + G L R+E +L L + G+ + + Q+ I+ Sbjct: 128 GEAQEAALSFGPLTVDLAYRRVLLDGAEVALTRKEYAVLAQLARHPGRVITQQQLLKDIW 187 Query: 179 GLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220 G + + + + LR+KL + + ++ +GY + Sbjct: 188 GPTHTE-DSHYLRIVVGHLRQKLADDPTQPRFIVTEAGVGYRL 229 >gi|254423455|ref|ZP_05037173.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] gi|196190944|gb|EDX85908.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] Length = 226 Score = 138 bits (347), Expect = 7e-31, Method: Composition-based stats. Identities = 47/227 (20%), Positives = 97/227 (42%), Gaps = 15/227 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ +D + G + E + + A D+ ++ L + L Sbjct: 4 ILITEDEPRIASFIKKGLNAHGFTTEVAITAQQAIAQTLEASFDLLILDLGL--PDKDGL 61 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ +R + +P+I ++ + + + G DD V KP E+LARV R+ Sbjct: 62 QVIEELRGQGATLPIIILTARDDIHDKVTGLEGGADDYVTKPFRFEELLARVRVRLRQAP 121 Query: 121 -------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 ++ + + R +V GE+ LP RE + E + G+ +++ Q+ Sbjct: 122 AAGSAATGNDQMLWASNVSLDLLTRRVQVSGEIVDLPAREFTLAETFFRHPGQVLSREQL 181 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G +D + N+V+ ++ LRKKL G D +++ R +GY + Sbjct: 182 LDRVWG-YDYSPGSNIVDVYVGYLRKKL----GADLIETVRGIGYRL 223 >gi|158421790|ref|YP_001523082.1| response regulator [Azorhizobium caulinodans ORS 571] gi|158328679|dbj|BAF86164.1| response regulator [Azorhizobium caulinodans ORS 571] Length = 245 Score = 138 bits (347), Expect = 7e-31, Method: Composition-based stats. Identities = 40/230 (17%), Positives = 80/230 (34%), Gaps = 14/230 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++ G +G + + + R D+ ++ L GE L Sbjct: 10 LLIVEDDREIRSLLADFLGREGYDTRLAADGRAMDAILAGIRPDLVILDIML--PGEDGL 67 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112 L R +RA VP++ ++ + + G DD + KP + RE + Sbjct: 68 SLCRRLRAQGDVPVLMLTAKGDEVDRIVGLEVGADDYLVKPFNPRELLARIRAILRRVQA 127 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 AA + A G I G L E +L + + +++ Q Sbjct: 128 AARVGEDPRRQDIAFGGLIADLDARSVRTPDGIALDLTSAEFDLLACFLERPRRVLSRDQ 187 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSI 220 + G + ++ +S+LR++L + + R GY Sbjct: 188 LLDWTRGRS-ADPFDRTIDVAVSRLRRRLSLVAPEAAQLIKTVRNGGYIF 236 >gi|104773345|ref|YP_618325.1| two-component system, response regulator [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103422426|emb|CAI96975.1| Two-component system, response regulator [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|325124950|gb|ADY84280.1| Putative response regulator [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 242 Score = 138 bits (347), Expect = 7e-31, Method: Composition-based stats. Identities = 45/233 (19%), Positives = 93/233 (39%), Gaps = 19/233 (8%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G +E E D+ ++ L + L Sbjct: 5 ILVVDDEKPISDIIKFNLIKEGFDVETAYDGEEAVEKVEEYNPDLLILDLML--PKKDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-------- 113 E+ R +R +P+I ++ + + G DD V KP +RE++ARV Sbjct: 63 EVAREVRQTHDMPIIMVTAKGGEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRRDI 122 Query: 114 -------AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166 + + +N + G + + D E GE L RE +L Y+ + + Sbjct: 123 VKKAVEVNQQKEKEQESNDIQIGNLLIKPDAYLVEKNGEKIELTHREFELLYYMAQHMDQ 182 Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGY 218 + + + ++G +D + V+ + +LR+K+ + + ++R +GY Sbjct: 183 VMTREHLLQTVWG-YDYFGDVRTVDVTVHRLREKIEDNPVRPKILVTRRGVGY 234 >gi|331663464|ref|ZP_08364374.1| transcriptional activator protein CopR [Escherichia coli TA143] gi|331059263|gb|EGI31240.1| transcriptional activator protein CopR [Escherichia coli TA143] Length = 269 Score = 138 bits (347), Expect = 7e-31, Method: Composition-based stats. Identities = 50/219 (22%), Positives = 97/219 (44%), Gaps = 3/219 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D ++ + G ++ + +L + ++ L G Sbjct: 19 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIML--PGMDGW 76 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + +R Q P+I ++ S+ + DSG +D + KP E+LARV A R+ Sbjct: 77 QILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHA 136 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 N+ E +R+ S + L R+E ++L L + G+ + +T I S I+G+ Sbjct: 137 LNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLASRAGEIIPRTVIASEIWGI- 195 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + N V+ I +LR K+ + + + R +GYS Sbjct: 196 NFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF 234 >gi|325679875|ref|ZP_08159444.1| putative heme response regulator HssR [Ruminococcus albus 8] gi|324108313|gb|EGC02560.1| putative heme response regulator HssR [Ruminococcus albus 8] Length = 224 Score = 138 bits (347), Expect = 7e-31, Method: Composition-based stats. Identities = 50/221 (22%), Positives = 96/221 (43%), Gaps = 7/221 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A ++ A +G N + D+ + Sbjct: 4 ILVVEDDASLRRLMSAALKQNGYQPFTANDGVEALDMLEKTNIDLIISDIM--MPNMDGY 61 Query: 62 ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL R + A Q+P+I ++ S + + F +G DD + KPI E++ RV A+ +R K Sbjct: 62 ELTRQLRNADFQIPIIMVTAKESFEDKKEGFGAGADDYMVKPIDINEMILRVGALLKRSK 121 Query: 121 VSNNRAETGPIRVFSD--GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 +++ T V G +P+ E ++L L++ K + Q+ ++ Sbjct: 122 LASEHTMTVGSCVLDYDAQTVSIDGGAGETIPQMEFKLLFKLLSYPNKIFTRRQLLDELW 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 G+ D+ V+E V+ HI +LR++ + F + + R LGY Sbjct: 182 GM-DKDVDERTVDVHIKRLRERYGSTDDFS-IVTVRGLGYK 220 >gi|326203229|ref|ZP_08193094.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] gi|325986487|gb|EGD47318.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] Length = 223 Score = 138 bits (347), Expect = 7e-31, Method: Composition-based stats. Identities = 42/224 (18%), Positives = 89/224 (39%), Gaps = 9/224 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++D +G + + D+ ++ Sbjct: 4 ILIVDDEAGIRDIIKKYAVFEGHEVVEAADGMEAIQVCREMEFDIIVMDVM--MPELDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + IR P++ +S + F+ G+DD V KP +E++ RV AI +R Sbjct: 62 SACKEIRKFCMTPVLMLSARGEEYDKIHGFELGIDDYVVKPFSPKELMMRVNAIVKRSSG 121 Query: 122 SNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + GR + E + +E + Y++ NRG + + ++ + + Sbjct: 122 DKGNKKDIFTIEGLTVDFTGRLVYIDNEKIDMSPKEYDLFFYMVKNRGIALTRERLITDV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +G +D ++ +++HI LRK L + + + R +GY + Sbjct: 182 WG-YDFFGDDRTLDTHIKLLRKSLGDYSKN--IVTLRGVGYRFE 222 >gi|254503410|ref|ZP_05115561.1| response regulator receiver domain protein [Labrenzia alexandrii DFL-11] gi|222439481|gb|EEE46160.1| response regulator receiver domain protein [Labrenzia alexandrii DFL-11] Length = 246 Score = 138 bits (347), Expect = 7e-31, Method: Composition-based stats. Identities = 38/229 (16%), Positives = 81/229 (35%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ +G+ + +A D+ ++ GE L Sbjct: 12 ILVVDDHRDIRETLARYLVKNGLRATACENASAARKALKAASIDLVVLDIM--MPGEDGL 69 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R + +P+I ++ + + G DD V KP + RE+LAR+ A+ RR + Sbjct: 70 SLCRHLVETGSMPVILLTAMADDTDRVIGLEIGADDYVTKPFNPRELLARIRAVLRRTSL 129 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRR---------ERRILEYLMANRGKRVAKTQ 172 + E ++L + + + Q Sbjct: 130 VPKDRDPIEQDRMHFDGWALNVTRRELTDPDGVAVALSSGEFQLLCAFLKRPKMVLNRDQ 189 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220 + G AV + +++ +S+LR+K+ + + + GY Sbjct: 190 LMDLTTGRT-PAVFDRSIDNQVSRLRRKIEEDPKDPKLIKTVWGGGYMF 237 >gi|152973211|ref|YP_001338357.1| DNA-binding transcriptional activator CusR [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238892871|ref|YP_002917605.1| DNA-binding transcriptional activator CusR [Klebsiella pneumoniae NTUH-K2044] gi|150958060|gb|ABR80090.1| response regulator in two-component regulatory system with CusS, regulation of copper resistance [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238545187|dbj|BAH61538.1| copper resistance two-component system response regulator [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 227 Score = 138 bits (347), Expect = 7e-31, Method: Composition-based stats. Identities = 36/224 (16%), Positives = 98/224 (43%), Gaps = 6/224 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G ++ ++ L ++ D+ ++ L Sbjct: 3 ILIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTSDYDLLILDIML--PDVNGW 60 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118 ++ R++RA + +P++ ++ +++ + + G DD + KP E+LARV Sbjct: 61 DIVRMLRAAGKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + ++ + + V R L +E +LE+ + ++G+ + ++ I S ++ Sbjct: 121 AVIVESQFQAADLSVDLVSRKVTRGATRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + + + N ++ + +LR K+ N + + R +GY ++ Sbjct: 181 DM-NFDSDTNAIDVAVKRLRAKIDNDFEPKLIQTVRGVGYMLEV 223 >gi|329922877|ref|ZP_08278393.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Paenibacillus sp. HGF5] gi|328941650|gb|EGG37935.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Paenibacillus sp. HGF5] Length = 231 Score = 138 bits (347), Expect = 7e-31, Method: Composition-based stats. Identities = 34/226 (15%), Positives = 80/226 (35%), Gaps = 14/226 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + +G ++E + S DV ++ + Sbjct: 5 LVVDDEISISSAVAYALRREGYTVETAGDGQEALERVESFDPDVMVLDVM--MPRLSGYD 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARVA 113 + R + + ++ ++ + + + G DD + KP RE +R Sbjct: 63 VCRKLEDRQRPAILLLTVKDDIVDKVLGLELGADDYMTKPFDMREIIARVKALSRRSRTP 122 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + + + R +G+ L +E ++ L N + ++ + Sbjct: 123 EAAGKQAPEQHVIRIAGLTINLLNRTIHAEGKPLELTPKEFDLMALLARNPERVYSREAL 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 ++ + D A V+ H+ +LRKKL N + + + +GY Sbjct: 183 LEQVWDM-DFAGGTRTVDIHVQRLRKKLGN--QHEVIQTVYGIGYK 225 >gi|229494339|ref|ZP_04388102.1| transcriptional regulatory protein [Rhodococcus erythropolis SK121] gi|229318701|gb|EEN84559.1| transcriptional regulatory protein [Rhodococcus erythropolis SK121] Length = 235 Score = 138 bits (347), Expect = 7e-31, Method: Composition-based stats. Identities = 50/225 (22%), Positives = 90/225 (40%), Gaps = 10/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + G + +S + + R D ++ G Sbjct: 10 ILVVDDEPTIVELLSVSLRFQGFEVATASSGAQGLDVARTFRPDAIVLDVM--MPGMDGF 67 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPI-----HHREILARVAAI 115 L R +RA P++ ++ SL + G DD V KP R + A Sbjct: 68 GLLRRLRADGVDAPVLFLTAKDSLDDKISGLTLGADDYVTKPFSLEEVVTRLRVILRRAG 127 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + R + I + D R+ +GE+ L E +L Y M N G ++K +I Sbjct: 128 RGVAPEQSPRVKFADIELDDDTREVWKKGELVALSPTEFTLLRYFMVNAGTVLSKPRILD 187 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +D E VVES++S LR+K+ + + + R +GY + Sbjct: 188 HVW-NYDFGGEVGVVESYVSYLRRKV-DTGETPLIHTLRGVGYVM 230 >gi|226304476|ref|YP_002764434.1| two-component response regulator PhoP [Rhodococcus erythropolis PR4] gi|226183591|dbj|BAH31695.1| two-component response regulator PhoP [Rhodococcus erythropolis PR4] Length = 243 Score = 138 bits (347), Expect = 7e-31, Method: Composition-based stats. Identities = 50/225 (22%), Positives = 90/225 (40%), Gaps = 10/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + G + +S + + R D ++ G Sbjct: 18 ILVVDDEPTIVELLSVSLRFQGFEVATASSGAQGLDVARTFRPDAIVLDVM--MPGMDGF 75 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPI-----HHREILARVAAI 115 L R +RA P++ ++ SL + G DD V KP R + A Sbjct: 76 GLLRRLRADGVDAPVLFLTAKDSLDDKISGLTLGADDYVTKPFSLEEVVTRLRVILRRAG 135 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + R + I + D R+ +GE+ L E +L Y M N G ++K +I Sbjct: 136 RGVAPEQSPRVKFADIELDDDTREVWKKGELVALSPTEFTLLRYFMVNAGTVLSKPRILD 195 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +D E VVES++S LR+K+ + + + R +GY + Sbjct: 196 HVW-NYDFGGEVGVVESYVSYLRRKV-DTGETPLIHTLRGVGYVM 238 >gi|169350719|ref|ZP_02867657.1| hypothetical protein CLOSPI_01492 [Clostridium spiroforme DSM 1552] gi|169292582|gb|EDS74715.1| hypothetical protein CLOSPI_01492 [Clostridium spiroforme DSM 1552] Length = 223 Score = 138 bits (347), Expect = 7e-31, Method: Composition-based stats. Identities = 44/219 (20%), Positives = 89/219 (40%), Gaps = 3/219 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + + +G S D+ ++ L G Sbjct: 6 ILIIEDNNDINEMIYNYLNKNGFKCYQAYSGTEGLLYCKDDNYDLIILDLML--PGMDGK 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + IR S +P+I ++ SL + ++ + G D + KP E+LAR+ R+ Sbjct: 64 SVLVKIREKSDIPVIVLTAKDSLNSKVEILEIGAYDYLCKPFELEELLARIHVQLRKSNK 123 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 N + + + D + ++ L R E ILE L+ N + K +I++ + Sbjct: 124 KTNNMTFKKLTLDNQIYDAIINNQLLQLTRHEYYILELLIQNPKRVFTKQEIYAYAW-ND 182 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D ++ + HIS +RKK+ + D + + +G+ + Sbjct: 183 DYLSDDKTINVHISNIRKKISKQTDEDYIKTVWGIGFKM 221 >gi|146313251|ref|YP_001178325.1| DNA-binding transcriptional regulator BasR [Enterobacter sp. 638] gi|145320127|gb|ABP62274.1| two component transcriptional regulator, winged helix family [Enterobacter sp. 638] Length = 220 Score = 138 bits (347), Expect = 7e-31, Method: Composition-based stats. Identities = 48/222 (21%), Positives = 94/222 (42%), Gaps = 9/222 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D L+++G ++G +L+ + + L S + ++ L + Sbjct: 3 LLIVEDDLLLQEGLALGLANEGYALDCAATAAEADSLIQSGEYSLVILDLGL--PDKDGA 60 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119 L R P++ ++ +++ + DSG DD + KP E+ AR A I R Sbjct: 61 TLLSQWRRRGVDNPVLILTARDAIEDRIHGLDSGADDYLVKPFALAELQARARALIRRYQ 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S+N+ G + + + + +E +L L+ G+ V + + IY Sbjct: 121 GHSDNQVVDGDLTLNLQTQQVLCDSHPVEVTPKEFALLTRLIMRSGQTVHRETLQQDIYS 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D N +E HI LR+KL G D + + R +GY ++ Sbjct: 181 WQD-DPGSNTLEVHIHNLRRKL----GKDRIKTVRGVGYRLE 217 >gi|111020130|ref|YP_703102.1| transcriptional regulator [Rhodococcus jostii RHA1] gi|110819660|gb|ABG94944.1| transcriptional regulator [Rhodococcus jostii RHA1] Length = 235 Score = 138 bits (347), Expect = 7e-31, Method: Composition-based stats. Identities = 50/220 (22%), Positives = 90/220 (40%), Gaps = 5/220 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D A + + +G + + E W + D + L G E Sbjct: 4 LVVEDEARLANVVRRGLELEGFVVVTAATGEDGLWHATEDTFDAIVLNIML--PGLNGYE 61 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R +RA P++ ++ D FD G DD + KP ++AR+ A+ RR Sbjct: 62 IVRALRAKQIWTPILMLTAKDGEYDQADAFDLGADDYLVKPFSFVVLVARLRALVRRAAP 121 Query: 122 SNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + T R E L RE +LE+L+ N + K +I ++ Sbjct: 122 ARPVLLTAGDLSLDPARRRVMRGNEELALTPREFGVLEFLLRNPDTALTKGEILRNVWDA 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +EN+VE ++ LR+K+ G +D+ R +GY + Sbjct: 182 H-YDGDENIVEVYVGYLRRKIDAPFGAHTIDTVRGVGYRL 220 >gi|92112237|ref|YP_572165.1| two component heavy metal response transcriptional regulator [Chromohalobacter salexigens DSM 3043] gi|91795327|gb|ABE57466.1| two component heavy metal response transcriptional regulator, winged helix family [Chromohalobacter salexigens DSM 3043] Length = 223 Score = 138 bits (347), Expect = 7e-31, Method: Composition-based stats. Identities = 51/221 (23%), Positives = 100/221 (45%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + D G+ G +E L A ++ ++ L G Sbjct: 3 ILLVEDESKTADYLARGLGEAGYRVEVARDGLDGRHLIEEADFELIILDVML--PGLDGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120 EL R+IR H QVP++ ++ +++ + + G DD + KP E+LARV + R Sbjct: 61 ELLRLIRRHGQVPVLFLTARDAVEYRVKGLELGADDYLVKPFSFVELLARVRTLLRRGPL 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 R + + + R L +E +L+ L+ G+ +++T I S ++G+ Sbjct: 121 RERERFQVADLHMDVLKRRVTRGETRLALTNKEFALLQLLLEREGEVLSRTLIASEVWGM 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + NVVE + +LR K+ + + ++R +GY ++ Sbjct: 181 -NFDSDTNVVEVAVRRLRAKVDDPFTRRLIHTERGMGYVLE 220 >gi|16081017|ref|NP_391845.1| two-component response regulator YxdK [Bacillus subtilis subsp. subtilis str. 168] gi|221311939|ref|ZP_03593786.1| hypothetical protein Bsubs1_21391 [Bacillus subtilis subsp. subtilis str. 168] gi|221316263|ref|ZP_03598068.1| hypothetical protein BsubsN3_21302 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221321175|ref|ZP_03602469.1| hypothetical protein BsubsJ_21250 [Bacillus subtilis subsp. subtilis str. JH642] gi|221325459|ref|ZP_03606753.1| hypothetical protein BsubsS_21401 [Bacillus subtilis subsp. subtilis str. SMY] gi|321313531|ref|YP_004205818.1| two-component response regulator YxdK [Bacillus subtilis BSn5] gi|1176993|sp|P42421|YXDJ_BACSU RecName: Full=Transcriptional regulatory protein yxdJ gi|709991|dbj|BAA03300.1| hypothetical protein [Bacillus subtilis] gi|2636512|emb|CAB16002.1| two-component response regulator [YxdK] [Bacillus subtilis subsp. subtilis str. 168] gi|291486589|dbj|BAI87664.1| hypothetical protein BSNT_06087 [Bacillus subtilis subsp. natto BEST195] gi|320019805|gb|ADV94791.1| two-component response regulator (YxdK) [Bacillus subtilis BSn5] Length = 229 Score = 138 bits (347), Expect = 7e-31, Method: Composition-based stats. Identities = 44/225 (19%), Positives = 87/225 (38%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++ G + + DV ++ L Sbjct: 4 IMIVEDSEDIRGLLQNYLEKYGYQTVVAADFTAVLDVFLREKPDVVLLDINLPA--YDGY 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115 R IR HS P+I IS + ++G DD + KP + + R A Sbjct: 62 YWCRQIRQHSTSPIIFISARSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYG 121 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 K E +++F + + Q E L ++E ++LE L+ K ++ ++ Sbjct: 122 EYAAKQGEKVVEYAGVQLFVERFELRFQDEKSELSKKESKLLEVLLERGEKVTSRDRLME 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + D +++N + +I++LRKKLR +++ R GY + Sbjct: 182 KTWDT-DIFIDDNTLNVYITRLRKKLRELNAPVSIEAVRGEGYQL 225 >gi|326794734|ref|YP_004312554.1| transcriptional regulator [Marinomonas mediterranea MMB-1] gi|326545498|gb|ADZ90718.1| two component transcriptional regulator, winged helix family [Marinomonas mediterranea MMB-1] Length = 225 Score = 137 bits (346), Expect = 7e-31, Method: Composition-based stats. Identities = 51/223 (22%), Positives = 92/223 (41%), Gaps = 5/223 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + + A G + S + D+ ++ L G +E Sbjct: 5 LIVEDEPKLAELMSAYLEQAGYEHHHLERGDIVVDYVKSNQVDLILLDLML--PGLDGIE 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLKV 121 + + +R S +P+I ++ L + G DD V KP RE++ARV A R Sbjct: 63 VCKQVRQFSGIPIIMVTAKAEEIDRLIGLEMGADDYVCKPFSPREVVARVKANLRRVELD 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 +T + +D +GE+ L E ++L+ L+ G+ + I +IY Sbjct: 123 HIESPKTDGFDLDADRLRATYKGELIDLTTVEFQLLQLLIKEPGRVFGRDLIMKSIYSDS 182 Query: 182 DEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223 V + ++SHI KLRKK+ + + S GY + N Sbjct: 183 -RVVSDRTIDSHIKKLRKKISAVAPELNVIHSVYGAGYRFENN 224 >gi|301067694|ref|YP_003789717.1| OmpR family DNA-binding response regulator [Lactobacillus casei str. Zhang] gi|300440101|gb|ADK19867.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus casei str. Zhang] Length = 233 Score = 137 bits (346), Expect = 7e-31, Method: Composition-based stats. Identities = 48/226 (21%), Positives = 97/226 (42%), Gaps = 5/226 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D A + D F + +S+ L + ++ I + Sbjct: 5 LLLVEDEAALADSLTTEFELENMSVIWAKDGAEALTLFKNNEGKINVIILDWMLPKLDGF 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 + R IR SQVP+I ++ + + G DD + KP E++ARV R+ Sbjct: 65 SVLRKIRQSSQVPIIMLTARDYIGDKVAGLTGGADDYITKPFEMEELVARVEVALRHNRQ 124 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + V +D + + + PL +RE +L L+A++ + ++ + A++ Sbjct: 125 AVSPATIFQVDDLLVDTDNKRVQRGEVIMPLTQREYELLVELVAHQDEACSRDDLLDAVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDWN 223 G D + N+++ +I LR K+ + G + + R +GY + N Sbjct: 185 GT-DFDGQPNILDVYIRNLRHKIDDHSGSKKLIHTVRGVGYMLSAN 229 >gi|229085620|ref|ZP_04217852.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock3-44] gi|228697700|gb|EEL50453.1| Two component transcriptional regulator, winged helix [Bacillus cereus Rock3-44] Length = 215 Score = 137 bits (346), Expect = 7e-31, Method: Composition-based stats. Identities = 40/219 (18%), Positives = 92/219 (42%), Gaps = 11/219 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++ DD + A F +G + E L + D++ ++ + Sbjct: 4 LIADDEQDMLKILKAYFEKEGFQVLLAKDGEEALELFYEEKIDLAILDWM--MPKRNGIT 61 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + I+ +S V ++ ++ + L SG D+ V KP H +L R ++L Sbjct: 62 VCQEIKKNSSVKVLVLTAKSENEDELVALQSGADEYVKKPFHPGILLTRA----KKLLNQ 117 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 NR + + + + + + E +++ + ++G + + ++ ++G F Sbjct: 118 GNRIQVKDLLIDVTKNKVYKNDKELEITKTELELIKCFLNHKGTILTRKKLLDIVWG-FA 176 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +E V++H+ +LRKK+ D + + LGYS++ Sbjct: 177 YFGDERTVDTHVRRLRKKIGE----DIIKTHHGLGYSLE 211 >gi|154505423|ref|ZP_02042161.1| hypothetical protein RUMGNA_02945 [Ruminococcus gnavus ATCC 29149] gi|153794266|gb|EDN76686.1| hypothetical protein RUMGNA_02945 [Ruminococcus gnavus ATCC 29149] Length = 232 Score = 137 bits (346), Expect = 7e-31, Method: Composition-based stats. Identities = 37/229 (16%), Positives = 85/229 (37%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D +++G G + + ++ ++ + Sbjct: 6 ILVVEDDKEIREGVKIYLQSQGYEVFLAADGIEGLEVMEKEDIHLAIVDIM--MPRMDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + +R P+I +S + + G DD V KP E++ARV + RR + Sbjct: 64 RMTMKLREKYDFPVIMLSAKSEEVDKIMGLNIGADDYVTKPFTPMELMARVNSQLRRYRR 123 Query: 122 SNNRAETGPIRV-------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + E D + + G+ L E +IL L N G+ + +I+ Sbjct: 124 FMEKLEVRENVHVIGGLEINEDTVEVSIDGKPVKLTPIEYKILLLLAKNPGRVFSAEEIY 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 ++ ++A+ + + H+ +R+K+ + + +GY I+ Sbjct: 184 ERVW--QEKAINTDTIMVHVRNIREKIELDPKNPKYLKVVWGVGYKIEK 230 >gi|325284496|ref|YP_004257035.1| two component transcriptional regulator, winged helix family [Deinococcus proteolyticus MRP] gi|324316670|gb|ADY27781.1| two component transcriptional regulator, winged helix family [Deinococcus proteolyticus MRP] Length = 221 Score = 137 bits (346), Expect = 7e-31, Method: Composition-based stats. Identities = 56/221 (25%), Positives = 97/221 (43%), Gaps = 8/221 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + A +G ++ R D++ ++ L G + Sbjct: 4 ILIVDDDPAILEILRAYLKAEGHTVLEACDGYSARE--QLPRADLAILDWML--PGVSGV 59 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +L R RA +P++ ++ + L D GVDD V KP RE++ARV A+ RR+ Sbjct: 60 DLAREARASGLTLPILMLTARGEEEDKLRGLDFGVDDYVVKPFSPREVVARVRALLRRVG 119 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 V A R+ G + GE L + E +L L + G + ++ ++G Sbjct: 120 VQEEIAVGDL-RIDLRGHSASLSGERLELSKLEFDLLSALAQHPGMAWPRERLLERVWG- 177 Query: 181 FDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 D E VV+ HI+ LRKKL + +++ R +GY Sbjct: 178 SDFPGTERVVDVHITGLRKKLGDTSDTPRFIETVRGVGYRF 218 >gi|237802299|ref|ZP_04590760.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. oryzae str. 1_6] gi|331025156|gb|EGI05212.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. oryzae str. 1_6] Length = 224 Score = 137 bits (346), Expect = 7e-31, Method: Composition-based stats. Identities = 38/223 (17%), Positives = 86/223 (38%), Gaps = 5/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G ++ + +L DV ++ L Sbjct: 3 ILVVEDEPKTAEYMHQGLTESGYIVDIAATGLDGLYLAQHQAYDVVILDVNL--PEMDGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119 E+ +R ++ ++ L+ + + G DD + KP E+ R Sbjct: 61 EVLTRLRKTVNTRIMMVTARGRLEEKVKGLEMGADDYLVKPFEFPELLARVRTLMRRSEQ 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + G + + + L +E +L LM + G+ +++TQI S ++ Sbjct: 121 TTTAKVLQVGDLELDQGRHRAFRGKQRIDLTTKEFALLHLLMRHSGEVMSRTQIISLVWD 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + + + NVVE I +LR K+ + + + R +GY ++ Sbjct: 181 M-NFDCDTNVVEVSIRRLRAKIDDPFETKLIHTLRGVGYVLEV 222 >gi|229197037|ref|ZP_04323775.1| Two component transcriptional regulator, winged helix [Bacillus cereus m1293] gi|228586457|gb|EEK44537.1| Two component transcriptional regulator, winged helix [Bacillus cereus m1293] Length = 215 Score = 137 bits (346), Expect = 7e-31, Method: Composition-based stats. Identities = 38/220 (17%), Positives = 95/220 (43%), Gaps = 11/220 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++ DD + A F +G + E + + D++ ++ + Sbjct: 4 LIADDEQDMLRILKAYFEKEGFEVFLAKDGEEALQIFYDEKIDLAILDWM--MPKHSGIT 61 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + I+ +S V ++ ++ + L SG D+ V KP H ++ R ++L Sbjct: 62 VCKEIKKNSSVKVLMLTAKSESEDELAALQSGADEYVKKPFHPGVLITRA----KKLIQH 117 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 ++ +++ + + + E +++ ++++G + + ++ ++G FD Sbjct: 118 DDVIRVQDLKIDFTKNKVYKNDKELDITKTELELIKCFLSHKGMILTRKKLLDIVWG-FD 176 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 EE V++H+ +LRKK+ + + + R LGYS++ Sbjct: 177 YFGEERTVDTHVRRLRKKVGE----NIIKTHRGLGYSLEE 212 >gi|255305348|ref|ZP_05349520.1| two-component response regulator [Clostridium difficile ATCC 43255] Length = 233 Score = 137 bits (346), Expect = 7e-31, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 92/228 (40%), Gaps = 9/228 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++IDD + + +S + L R +S + ++ + Sbjct: 5 LIIDDDKELCALMKKCVEQENLSAITAHCGAEGLHLVDKNRHTLSLVILDIMMPDIDGFQ 64 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121 + + IR S +P+I ++ + G DD + KP E++ARV ++ RR + Sbjct: 65 VLKKIRETSNIPVIMLTAKNDEDDKVSGLRLGADDYLTKPFSINELMARVNSLIRRYTML 124 Query: 122 ------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + + R V +E +L +L +N+G+ K QI++ Sbjct: 125 NPAFITDTDCIIINGMIIDKTNRIVSVNNIPVQFTSKEFDLLAFLASNKGRVFTKKQIYT 184 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDW 222 ++ + A +++ + S ISKLRKK+ + + R +GY + Sbjct: 185 QVW-EEEYAFDDSNIMSFISKLRKKIEPDPNHPFYILTVRGVGYRFNK 231 >gi|30023294|ref|NP_834925.1| two-component response regulator [Bacillus cereus ATCC 14579] gi|228955506|ref|ZP_04117511.1| DNA-binding response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229147792|ref|ZP_04276135.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24] gi|229193510|ref|ZP_04320457.1| DNA-binding response regulator [Bacillus cereus ATCC 10876] gi|29898855|gb|AAP12126.1| Two-component response regulator [Bacillus cereus ATCC 14579] gi|228590042|gb|EEK47914.1| DNA-binding response regulator [Bacillus cereus ATCC 10876] gi|228635805|gb|EEK92292.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24] gi|228804298|gb|EEM50912.1| DNA-binding response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 224 Score = 137 bits (346), Expect = 7e-31, Method: Composition-based stats. Identities = 42/226 (18%), Positives = 85/226 (37%), Gaps = 12/226 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +++ +G + + DV ++ L Sbjct: 4 ILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALERWNEG-PDVLILDVML--PDTDGY 60 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAI 115 EL R+ R +P++ ++ + L G DD V KP ++ R Sbjct: 61 ELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRVK 120 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 VS+ E G I + R V G+ L RE + + ++N + + ++ Sbjct: 121 KTEAAVSHEVIEAGEIVICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 180 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G F+ V+ + +LRKKL + + + +GY +D Sbjct: 181 KVWG-FEYIGNTRAVDIMVQRLRKKLGTSG--EYIKTIYGVGYKLD 223 >gi|152977462|ref|YP_001376979.1| two component transcriptional regulator [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152026214|gb|ABS23984.1| two component transcriptional regulator, winged helix family [Bacillus cytotoxicus NVH 391-98] Length = 223 Score = 137 bits (346), Expect = 7e-31, Method: Composition-based stats. Identities = 46/226 (20%), Positives = 90/226 (39%), Gaps = 12/226 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +++ +G + S + DV ++ L Sbjct: 3 ILVVDDESSIRNLIRMQLEIEGYEVLTAASGKEALERWEDG-PDVLILDVML--PDIDGY 59 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL R+ R +P++ ++ + L G DD V KP ++ E++ RV + RR+ Sbjct: 60 ELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRVT 119 Query: 121 VSNNRAETGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 IR V R V GE L RE + + ++N + + ++ Sbjct: 120 KREVPQNHEVIRAGEIVVCPKERKVHVNGEEVQLTYREFNLCKLFVSNPQRVFMREELLE 179 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G F+ V+ + +LRKKL+ + + +GY +D Sbjct: 180 KVWG-FEYIGNTRAVDIMVQRLRKKLKASGEH--IKTIYGVGYKLD 222 >gi|329941091|ref|ZP_08290370.1| two-component system response regulator [Streptomyces griseoaurantiacus M045] gi|329299622|gb|EGG43521.1| two-component system response regulator [Streptomyces griseoaurantiacus M045] Length = 225 Score = 137 bits (346), Expect = 7e-31, Method: Composition-based stats. Identities = 49/223 (21%), Positives = 92/223 (41%), Gaps = 6/223 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L +D A + + +G +E D+ ++ L G LE Sbjct: 5 LLAEDDASISEPLARALRREGYEVEVREDGPTALDAGMQGGVDLVVLDLGL--PGMDGLE 62 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R +R+ P++ ++ T+ D+G DD V KP E+LARV A+ RR Sbjct: 63 VARRLRSEGHTVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAT 122 Query: 122 SNNRAE-TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + T +R+ + + E L +E +L L+ + G+ V + Q+ ++ Sbjct: 123 EPQQPPATHGVRIDVESHRAWMGEEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 182 Query: 181 FDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222 + ++ HIS LRKKL + + + R +G+ + Sbjct: 183 TWWS-STKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEK 224 >gi|325679549|ref|ZP_08159129.1| transcriptional regulatory protein afsQ1 [Ruminococcus albus 8] gi|324108836|gb|EGC03072.1| transcriptional regulatory protein afsQ1 [Ruminococcus albus 8] Length = 220 Score = 137 bits (346), Expect = 7e-31, Method: Composition-based stats. Identities = 47/222 (21%), Positives = 94/222 (42%), Gaps = 8/222 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D ++++G +G +S+ + L D+ ++ L Sbjct: 3 ILLVEDDPIIQEGLKLALTSEGCGFAAASSVAEAKALLG-GEYDICILDVML--PDGTGY 59 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 ++ IR P+I ++ T+ ++G DD + KP RE++AR+ R Sbjct: 60 DVCAEIRRKGDTPVIFLTACDDELHTVLALENGADDYIAKPFRMRELMARIKAVLRRMGR 119 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 S + G V G L E ++L + NRG +++ Q+ I+ Sbjct: 120 KTDSEEPVKVGSNDVNVRTGKVFRDGSEVILTAMEYKLLLIFINNRGAVLSRQQLLHNIW 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + V +N + ++ +LR+KL N G + + + R LGY + Sbjct: 180 DVAGDYVTDNTLTVYVKRLREKLEN--GDEVIQTVRGLGYRL 219 >gi|75906463|ref|YP_320759.1| multi-component transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75700188|gb|ABA19864.1| multi-component transcriptional regulator, winged helix family [Anabaena variabilis ATCC 29413] Length = 1629 Score = 137 bits (346), Expect = 7e-31, Method: Composition-based stats. Identities = 50/222 (22%), Positives = 92/222 (41%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D L A+ + ++E + L + D+ ++ L + Sbjct: 3 ILIVEDDELNAYALTAVLTNQNYAVEVGSDGITAWELIQTYDYDLILLDVIL--PRLDGI 60 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L R IR+ Q+P++ ++ S D+G DD V KP E++ARV A+ RR Sbjct: 61 SLCRQIRSSGRQMPILLLTGCDSSHEKAIGLDAGADDYVVKPFDEEELVARVRALLRRGG 120 Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + ++ + + L +E +LE + + + + + I I+ Sbjct: 121 TTAQPILEWGNLQLDPSSCEVRYNQNLLSLTPKEYALLELFLRHSRRVFSCSMILEHIWS 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220 D EE V +HI LR KLRN D V++ +GY + Sbjct: 181 YEDTPGEE-AVRTHIKGLRMKLRNAGAPGDLVETVYGIGYRL 221 Score = 73.2 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 13/95 (13%), Positives = 32/95 (33%), Gaps = 1/95 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61 ++ DD L++ +L G + + + S+ DV ++ + G + + Sbjct: 1382 LVCDDDPLIRTELQSLLEQGGYRVVTVATGKEAIASASTQHPDVIVLDLLMPGMNGWETM 1441 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVD 96 + + +P++ S Y D Sbjct: 1442 AMLKESTETKHIPIVICSVYKPTTNNQPSSDFVDW 1476 Score = 55.8 bits (133), Expect = 5e-06, Method: Composition-based stats. Identities = 9/80 (11%), Positives = 30/80 (37%), Gaps = 1/80 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVL 61 + +DD + L G+ + + D+ ++ + G ++ Sbjct: 384 LAVDDDPQILAILQTLLHPWGLQVITLDDPRQFWETLRDVNPDLLILDVEMPYTNGIELC 443 Query: 62 ELPRIIRAHSQVPLIGISDY 81 ++ R S++P++ ++ + Sbjct: 444 QVVRNDPQWSELPILFLTVH 463 Score = 43.5 bits (101), Expect = 0.021, Method: Composition-based stats. Identities = 5/40 (12%), Positives = 15/40 (37%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS 41 ++++D A + + ++ LF + + L Sbjct: 1503 ILIVEDDADLAELFVTLFERHDIETFSAKTGREAIHLSQE 1542 >gi|148265316|ref|YP_001232022.1| two component transcriptional regulator [Geobacter uraniireducens Rf4] gi|146398816|gb|ABQ27449.1| two component transcriptional regulator, winged helix family [Geobacter uraniireducens Rf4] Length = 225 Score = 137 bits (346), Expect = 7e-31, Method: Composition-based stats. Identities = 50/221 (22%), Positives = 95/221 (42%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + G E + D+ ++ L G + L Sbjct: 5 ILIVEDEEKLAALLADYLKQSGFDSEWLADGQAVVPWVKRHGPDLILLDLML--PGRRGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + IR+ S VP+I I+ L + G DD + KP RE++ARV ++ RR Sbjct: 63 DICKEIRSFSDVPIIMITARIEEIDRLLGLELGADDYICKPFSPREVVARVKSLLRRTGG 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + G + + + G V L E ++L +L +N G+ +++Q+ IY Sbjct: 123 RLTASVQGL-ILDTSRYQATLHGHVLDLTVVEFKLLHFLFSNPGQIYSRSQLMHRIY-PD 180 Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 + V + ++SH+ KLRKK+ + + S +GY + Sbjct: 181 ERIVSDRTIDSHVKKLRKKISLAAPDQELIHSVYGIGYKFE 221 >gi|323142466|ref|ZP_08077286.1| transcriptional regulatory protein WalR [Phascolarctobacterium sp. YIT 12067] gi|322413043|gb|EFY03942.1| transcriptional regulatory protein WalR [Phascolarctobacterium sp. YIT 12067] Length = 232 Score = 137 bits (346), Expect = 7e-31, Method: Composition-based stats. Identities = 45/224 (20%), Positives = 86/224 (38%), Gaps = 6/224 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++ DD + +G +++ + ++ E Sbjct: 5 LIADDNKQITTILSGYAKKEGFEPVVALDGAEALDKYLQYEHEIAVVLLDVMMPEIDGFE 64 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR----R 118 + R +R S VP+I I+ + D G DD V KP E++ARV A+ R + Sbjct: 65 VCRRLRKESMVPIIMITARGEDYDKIMGLDIGADDYVIKPFSAPEVMARVRAVLRRLGAQ 124 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + + + ++ GE L ++E +L L N K ++ + +I+ Sbjct: 125 EPANAQTLSYANLYINLEKYAVQINGEDVALTKKEIELLWTLAKNSTKVFSRDNLLDSIW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSID 221 G +D + V+SHI +LR KL + + +GY + Sbjct: 185 G-YDYFGDSRTVDSHIKRLRAKLDKYEHPLWEIKTIWGVGYRFE 227 >gi|295692613|ref|YP_003601223.1| response regulator [Lactobacillus crispatus ST1] gi|295030719|emb|CBL50198.1| Response regulator [Lactobacillus crispatus ST1] Length = 240 Score = 137 bits (346), Expect = 7e-31, Method: Composition-based stats. Identities = 45/233 (19%), Positives = 90/233 (38%), Gaps = 15/233 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D V + F +G + + + I L + + Sbjct: 5 ILMVEDDTSVAEMMGMFFKKEGWQQDIAVDGVEAVDMFKKNADKYDLITLDLNLPKKDGI 64 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ + +RA S P+I ++ S + G D+ V KP ++AR+ A++RR+ Sbjct: 65 QVAKEVRAISPTVPIIMLTARGSESDQVLGLGIGADEYVTKPFSPIALIARIKALHRRVM 124 Query: 121 VSNNRAETGPIRVFS------------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 + A T V L +E +L + + Sbjct: 125 MEEEPAHTQEDNQDYEITTDHLKISKNRREVLFDNQPVMGLTPKEFDLLYTMAQKPRQVF 184 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ Q+ ++G ++ EE V++HI KLR+KL K+G + + +GY D Sbjct: 185 SRDQLLELVWG-YEYYGEERTVDAHIKKLRQKLE-KVGAKVIQTVWGVGYKFD 235 >gi|326559342|gb|EGE09769.1| two-component system phosphate regulon response regulator PhoB [Moraxella catarrhalis 7169] Length = 230 Score = 137 bits (346), Expect = 7e-31, Method: Composition-based stats. Identities = 38/223 (17%), Positives = 85/223 (38%), Gaps = 5/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG--KGEK 59 ++++D + + + + + D+ ++ + G Sbjct: 5 ILVVEDEPAINELIAGTLDLSDFDVVQAYDTQGAYVAVVDEKPDLILLDWMMPHGESGID 64 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 + A + +P+I ++ + D+GVDD + KP RE+++RV A+ RR Sbjct: 65 FARRLKKNPATADIPIIMLTAKGEEDNKVYGLDAGVDDYITKPFSTRELISRVRAVLRRT 124 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPR--RERRILEYLMANRGKRVAKTQIFSAI 177 + + + + V + E R+L + + + + + QI A+ Sbjct: 125 GIDMGKELMQAGNLSINTASQRVMAGGTEITMSITEYRLLCFFVTHSERAYTRAQILDAV 184 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G + ++E ++ HI +LRK L + + R GY Sbjct: 185 WG-GNVYIDERTIDVHIRRLRKLLAPYGADTLIQTVRGTGYRF 226 >gi|320010411|gb|ADW05261.1| two component transcriptional regulator, winged helix family [Streptomyces flavogriseus ATCC 33331] Length = 225 Score = 137 bits (346), Expect = 7e-31, Method: Composition-based stats. Identities = 45/223 (20%), Positives = 87/223 (39%), Gaps = 6/223 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L +D A + + +G +E D+ ++ L G LE Sbjct: 5 LLAEDDASISEPLARALRREGYEVEVREDGPTALDAGLQGGVDLVVLDLGL--PGMDGLE 62 Query: 63 LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-HREILARVAAIYRRLK 120 + R +RA VP++ ++ T+ D+G DD V KP + A + R Sbjct: 63 VARRLRADGHAVPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAA 122 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + T +R+ + + E L +E +L L+ + G+ V + Q+ ++ Sbjct: 123 EPAPQPATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 182 Query: 181 FDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222 + ++ HIS LRKKL + + + R +G+ + Sbjct: 183 TWWS-STKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEK 224 >gi|160947044|gb|ABX54691.1| response regulator [Enterococcus faecalis] Length = 231 Score = 137 bits (346), Expect = 7e-31, Method: Composition-based stats. Identities = 43/230 (18%), Positives = 92/230 (40%), Gaps = 12/230 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 V++DD + + ++G + F E + ++ ++ L Sbjct: 5 IVVVDDEQEIANLITTFLENEGFQVTTFYKGEDFLTYIARESISLAILDVML--PDIDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + IR + P++ ++ + G DD + KP + E++ARV RR++ Sbjct: 63 RILQEIRKNFYFPVLMLTAKEENMDKIMGLTLGADDYITKPFNPIEVVARVKTQLRRVQK 122 Query: 122 SNNRAETGPIRVFS--------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 N + E + F+ D + + + E +L YL ++G V+ ++ Sbjct: 123 YNRKVENESVIEFNKDGLTLKKDSHQVFLFDKEITVTPIEFNLLLYLFEHQGVVVSSEEL 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDW 222 F A++ N + +HI++LR+KL + + +GY I+ Sbjct: 183 FEAVWKEKYLE-NNNTIMAHIARLREKLDEQPRKPKFIKTVWGVGYIIEK 231 >gi|50954116|ref|YP_061404.1| two-component system, regulatory protein [Leifsonia xyli subsp. xyli str. CTCB07] gi|50950598|gb|AAT88299.1| two-component system, regulatory protein [Leifsonia xyli subsp. xyli str. CTCB07] Length = 240 Score = 137 bits (346), Expect = 7e-31, Method: Composition-based stats. Identities = 51/222 (22%), Positives = 91/222 (40%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++ +G + + +AI+ L G Sbjct: 3 LLVVEDDPDMRGLVQRGLAAEGYDVTLMTNGVDALIALRDDTYSAAAIDVML--PGMSGF 60 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL R IR +P++ ++ +++ + DSG DD + KP E+ ARV A+ RR Sbjct: 61 ELCRHIRDSGTAMPILLLTARDAIEDRVHGLDSGADDYLTKPFAFAELAARVRALLRREP 120 Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + S V G PL RRE +L N K +++ I +++G Sbjct: 121 TGMRPQIIVGRLTIDSHEHQTLVSGHEMPLSRREFTLLRLFATNPDKTLSRADILESVWG 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + NV++ ++S LRKKL + ++R GY +D Sbjct: 181 TTENIG-TNVIDQYVSYLRKKLDVAGAGLSIVTERGRGYRLD 221 >gi|172058611|ref|YP_001815071.1| two component transcriptional regulator [Exiguobacterium sibiricum 255-15] gi|171991132|gb|ACB62054.1| two component transcriptional regulator, winged helix family [Exiguobacterium sibiricum 255-15] Length = 223 Score = 137 bits (346), Expect = 7e-31, Method: Composition-based stats. Identities = 39/222 (17%), Positives = 89/222 (40%), Gaps = 9/222 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +++DD ++ + +E S E L ++ D+ ++ L G + Sbjct: 3 ILVVDDEESIRHLVRLQLEIEHYQVETAKSGEEALKLHATQSFDLIILDLMLPDTTGFDL 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA---IYR 117 + R + +P++ ++ + + G DD + KP + E++ RV Sbjct: 63 IPQLRS--SQPDLPILMLTARDQMNDKIIGLQLGADDYMTKPFNGTELVLRVKNLLKRVV 120 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 ++ + + + S R + GE PL RE +L + + + + ++ + Sbjct: 121 QMTPKPFTVDDSFLTIDSAERTILLDGEPLPLTYREYALLALFLQHPKRVFEREELLEQV 180 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 +G FD + + V+ + +LRKKL + + + + GY Sbjct: 181 WG-FDFSGQTRAVDIMVQRLRKKLGPQG--ERLKTIYGAGYK 219 >gi|329927392|ref|ZP_08281651.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] gi|328938531|gb|EGG34916.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] Length = 235 Score = 137 bits (346), Expect = 8e-31, Method: Composition-based stats. Identities = 41/226 (18%), Positives = 81/226 (35%), Gaps = 10/226 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++I+D + G S + + + D ++ L +E Sbjct: 8 LIIEDERDISRIVNDYLRVQGFSTFITENARDGLQGVRNRQPDFIILDLTL--PDADGIE 65 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH------HREILARVAAIY 116 + R +R + P++ +S S + G DD + KP + R A Sbjct: 66 VCRELRTLTSAPILILSARSSDTDKVLALGFGADDYMTKPFSLSELVARVQAHLRRMADP 125 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + G + + R L +E +L +L +N + KTQ+ Sbjct: 126 KLQAATQQLLRFGTLSIDKSARKVMAGQREIALSAKEFDLLYFLASNPNQVFTKTQLLDQ 185 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221 ++G + VE+N + +I +LR+KL + + +GY D Sbjct: 186 VWG-YSAYVEDNTITVYIRRLREKLERSGIKSAYITTVWGVGYKFD 230 >gi|285018336|ref|YP_003376047.1| two-component system regulatory protein, luxr family [Xanthomonas albilineans GPE PC73] gi|283473554|emb|CBA16057.1| probable two-component system regulatory protein, luxr family [Xanthomonas albilineans] Length = 229 Score = 137 bits (346), Expect = 8e-31, Method: Composition-based stats. Identities = 52/227 (22%), Positives = 84/227 (37%), Gaps = 12/227 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D A A DG + + L + + D+ ++ L Sbjct: 6 ILLVEDDADSASILEAYLRRDGFEVAVAEDGQKAVRLHAQWKPDLVLLDIMLPM--LSGT 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ IR P+I ++ L G DD V KP +E++ARV A+ RR Sbjct: 64 EVLSTIRRSGDTPVIMVTAMGDEPEKLGALRYGADDYVVKPYSPKEVVARVYAVLRRTGP 123 Query: 122 SNNRAETGPIRVFSDG--------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + E S RD + + L E +L LM K + ++ Sbjct: 124 ARGSEEPLRHDRLSVDTAAVRATVRDDQGRESPLELTPTEFNLLATLMKTPFKAFTRNEL 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 L D E VV++H+ LRKKL + + + R +GY Sbjct: 184 LEIC--LPDSDALERVVDAHVHNLRKKLEQEGIHGLLVTVRAIGYRF 228 >gi|70730005|ref|YP_259744.1| transcriptional regulatory protein RstA [Pseudomonas fluorescens Pf-5] gi|68344304|gb|AAY91910.1| transcriptional regulatory protein RstA, putative [Pseudomonas fluorescens Pf-5] Length = 236 Score = 137 bits (346), Expect = 8e-31, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 91/224 (40%), Gaps = 8/224 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L++D + G + + + + + ++ L G+ L Sbjct: 10 LLVEDDEKLAGLIAHFLSQHGFEVLTVHRGDTALAAFLEFKPKLVVLDLML--PGQSGLH 67 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IRA + P++ ++ + +SG DD V KPI +LAR+ A+ RR Sbjct: 68 VCREIRAVADTPIVILTAKEDDLDHILGLESGADDYVIKPIKPAVLLARLRALQRRQVPE 127 Query: 123 NNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 G + + + R+ + GE L E +L L + GK +++ I + + Sbjct: 128 TTTLRGALAFGVLSIDRNSREVRLAGEPVELTTMEFELLWLLASAPGKTLSRDDILNRMR 187 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 G+ + V+ +ISKLR KL++ + + GY + Sbjct: 188 GI-EFDGLNRSVDVYISKLRGKLKDNPREPVCIKTVWGKGYLFN 230 >gi|42781949|ref|NP_979196.1| response regulator [Bacillus cereus ATCC 10987] gi|42737873|gb|AAS41804.1| response regulator [Bacillus cereus ATCC 10987] Length = 215 Score = 137 bits (346), Expect = 8e-31, Method: Composition-based stats. Identities = 38/220 (17%), Positives = 95/220 (43%), Gaps = 11/220 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++ DD + A F +G + E + + D++ ++ + Sbjct: 4 LIADDEQDMLRILKAYFEKEGFEVLLAKDGEEALQIFYDEKIDLAILDWM--MPKHSGIT 61 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + I+ +S V ++ ++ + L SG D+ V KP H ++ R ++L Sbjct: 62 VCQEIKKNSSVKVLMLTAKSESEDELAALQSGADEYVKKPFHPGVLITRA----KKLIQH 117 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 ++ + +++ + + + E +++ + ++G + + ++ ++G FD Sbjct: 118 DDVIQVQDLKIDFTKNKVYKNDKELDITKTELELIKCFLNHKGMILTRKKLLDIVWG-FD 176 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 EE V++H+ +LRKK+ + + + R LGYS++ Sbjct: 177 YFGEERTVDTHVRRLRKKVGE----NIIKTHRGLGYSLEE 212 >gi|302187377|ref|ZP_07264050.1| KDP operon transcriptional regulatory protein kdpE [Pseudomonas syringae pv. syringae 642] Length = 230 Score = 137 bits (346), Expect = 8e-31, Method: Composition-based stats. Identities = 41/223 (18%), Positives = 85/223 (38%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD ++ G + + + + D+ ++ L Sbjct: 7 ILVIDDEPQIRKFLRISLASQGYKVLEAATGAEGLTQAALNKPDLLVLDLGL--PDMDGQ 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 ++ R S VP++ +S S + D+G +D V KP +E LAR+ Sbjct: 65 QVLSEFREWSAVPVLVLSVRASEAQKVQALDAGANDYVTKPFGIQEFLARIRALLRQVSG 124 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + GP+ V R + + L R+E +L L + G+ + + Q+ I+ Sbjct: 125 NDKPESALRFGPLTVDLAYRRVLLDEQEMALTRKEYAVLAQLARHPGRVITQQQLLKDIW 184 Query: 179 GLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220 G + + + + LR+KL + + ++ +GY + Sbjct: 185 GPTHTE-DSHYLRIVVGHLRQKLADDPTAPRFILTEPGIGYRL 226 >gi|239993470|ref|ZP_04713994.1| response regulator in two-component regulatory system with PhoQ [Alteromonas macleodii ATCC 27126] Length = 224 Score = 137 bits (346), Expect = 8e-31, Method: Composition-based stats. Identities = 55/222 (24%), Positives = 105/222 (47%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ +D + + AL +G S++ ++ E +L D++ ++ Sbjct: 3 ILVAEDDSRLLTQLDALLQQNGYSVDLADNGEHALFLIKEYSYDLAIVDIG--MPKLDGF 60 Query: 62 ELPRI-IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI-LARVAAIYRRL 119 E+ R +A P++ ++ Q ++ D+G DD + KP H+ E+ A I R Sbjct: 61 EVIRKARQADISCPILILTARDRWQEKVEGLDAGADDYLTKPFHNEELLARTKALIRRAS 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +N + GPI + + + + G+ L E +++EYLM N K ++KT++ IY Sbjct: 121 GQANPTIQFGPISLDTVSEELSLNGQALDLTAYEYKVMEYLMLNPQKVISKTELTEHIYD 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D ++ NV+E + +LRKKL P+++ R GY I+ Sbjct: 181 Q-DFDLDSNVIEVFVGRLRKKLDPTGELKPIETLRGRGYRIN 221 >gi|229590533|ref|YP_002872652.1| putative two-component response regulator transcriptional regulatory protein [Pseudomonas fluorescens SBW25] gi|229362399|emb|CAY49304.1| putative two-component response regulator transcriptional regulatory protein [Pseudomonas fluorescens SBW25] Length = 248 Score = 137 bits (346), Expect = 8e-31, Method: Composition-based stats. Identities = 44/229 (19%), Positives = 75/229 (32%), Gaps = 13/229 (5%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + ++ +D + D A G L S + D+ ++ + Sbjct: 20 LILIAEDEPEIADILSAYLKRSGFQTAQALDGRRALELHQSLKPDLVLLDV--LMPNLDG 77 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-------- 112 + IR P+I ++ L G DD + KP + E++AR Sbjct: 78 WMVLAEIRHRGTTPVIMLTAQDQDMDKLMGLRIGADDYIVKPFNPAEVVARTQAVLRRSL 137 Query: 113 -AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 R V A I Q L E R+L L + ++ Sbjct: 138 DHGYATRPSVLRVNAFEIDIDSHEVSVQIGAQKHPLNLTVTEFRLLAQLAKAPKRVFSRA 197 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ + + E V+SHISKLR+K+ + S R +GY Sbjct: 198 ELLALC--SPESDSLERTVDSHISKLRRKIEDLGLQGVPVSIRGVGYRF 244 >gi|254524305|ref|ZP_05136360.1| two component transcriptional regulator, winged helix family [Stenotrophomonas sp. SKA14] gi|219721896|gb|EED40421.1| two component transcriptional regulator, winged helix family [Stenotrophomonas sp. SKA14] Length = 239 Score = 137 bits (346), Expect = 8e-31, Method: Composition-based stats. Identities = 48/228 (21%), Positives = 95/228 (41%), Gaps = 13/228 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARE-DVSAIEAFLIGKGEKVL 61 ++++D A + D GD+G + S + L D ++ L G L Sbjct: 7 LIVEDDAHIADLLRMHLGDEGYDVAHAASGDAGLRLLEQEGPWDALVLDVML--PGVDGL 64 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVA 113 ++ + RA VP+I IS S + + G DD + KP E++ R Sbjct: 65 QVCQRARAMARYVPIIIISARGSETQRIVGLELGADDYLAKPFSMPELVARVRALLRRAE 124 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 A+ + ++ E G +++ R V+G L RE +L + + + A+ ++ Sbjct: 125 AMAQSARIDAGAIELGGLQLDPVARTASVEGTALELTPREFDLLLFFARHPDQVFARMEL 184 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + ++G + E+ V +HI++LR K+ + + + GY + Sbjct: 185 LNQVWG-YQHDGYEHTVNTHINRLRSKIETDPANPRRLLTVWGRGYKL 231 >gi|157150931|ref|YP_001450784.1| response regulator Rr1 [Streptococcus gordonii str. Challis substr. CH1] gi|262283082|ref|ZP_06060849.1| response regulator Rr1 [Streptococcus sp. 2_1_36FAA] gi|157075725|gb|ABV10408.1| response regulator Rr1 [Streptococcus gordonii str. Challis substr. CH1] gi|262261334|gb|EEY80033.1| response regulator Rr1 [Streptococcus sp. 2_1_36FAA] Length = 228 Score = 137 bits (346), Expect = 8e-31, Method: Composition-based stats. Identities = 42/220 (19%), Positives = 84/220 (38%), Gaps = 6/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D +++ + G + L + ++ L Sbjct: 4 IMLVEDDPVIRQMIKKMLEQWGYQVFAVEDFMEVLSLFVKEEPQLVLMDIGLPL--FNGY 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 + IR S VP++ +S + + G DD V KP + LA+V Sbjct: 62 HWCQEIRKISTVPIMFLSSRDQAMDIVMAINMGGDDYVTKPFDNNVFLAKVQGLLRRSYE 121 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 N E + + D G+V L + E +IL L G V + + ++ Sbjct: 122 FGTDQNLLEHRGVILNLKSMDLMYNGQVITLTKNEFQILRVLFERAGSIVEREDLMKELW 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 D +++N + ++++LRKKL + +++K+ +GY Sbjct: 182 -NSDFFIDDNTLSVNVARLRKKLEETGLKNFIETKKGIGY 220 >gi|21221787|ref|NP_627566.1| two-component system response regulator [Streptomyces coelicolor A3(2)] gi|256787037|ref|ZP_05525468.1| two-component system response regulator [Streptomyces lividans TK24] gi|289770930|ref|ZP_06530308.1| two-component system response regulator [Streptomyces lividans TK24] gi|81859427|sp|Q9ZEP4|CSEB_STRCO RecName: Full=Transcriptional regulatory protein CseB gi|3980223|emb|CAA10325.1| response regulator [Streptomyces coelicolor A3(2)] gi|4585590|emb|CAB40858.1| two-component system response regulator [Streptomyces coelicolor A3(2)] gi|289701129|gb|EFD68558.1| two-component system response regulator [Streptomyces lividans TK24] Length = 234 Score = 137 bits (346), Expect = 8e-31, Method: Composition-based stats. Identities = 48/232 (20%), Positives = 95/232 (40%), Gaps = 21/232 (9%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 + ++D ++++ DG ++ + R D++ ++ L G + Sbjct: 8 LFVEDDDVIREATQLALERDGFAVTAMPDGLSGLESFRADRPDIALLDVML--PGLDGVS 65 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R IR S VP+I +S + ++G DD V KP ++AR+ A+ RR + Sbjct: 66 LCRRIRDESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRRFGHA 125 Query: 123 NNRAE--------------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 G + V +DG + G L E R+L + G + Sbjct: 126 GGGDRTEGAGAAETGGVLTFGDLEVDTDGMEVRRAGRPVGLTPTEMRLLLEFSSAPGTVL 185 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ ++ ++ + + VV+ H+ +LR K+ G D +++ R GY + Sbjct: 186 SRDKLLERVWD-YGWGGDTRVVDVHVQRLRTKI----GQDRIETVRGFGYKL 232 >gi|104774697|ref|YP_619677.1| two-component system, response regulator [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116514824|ref|YP_813730.1| DNA-binding response regulator [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|103423778|emb|CAI98784.1| Two-component system, response regulator [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116094139|gb|ABJ59292.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 228 Score = 137 bits (346), Expect = 8e-31, Method: Composition-based stats. Identities = 40/227 (17%), Positives = 91/227 (40%), Gaps = 9/227 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + ++G + + S+ D++ + ++ + Sbjct: 3 ILVVDDDHEIVELLSIYLKNEGYEPIAAYNGKEALTKLSTT-PDIALMILDVMMPNMSGI 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------AI 115 ++ + +R S +P+I +S + +G DD V+KP + E++ARV Sbjct: 62 DVVKEVRKDSDIPIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRRSQK 121 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + + I V+G+ L E IL L ++ + + +IF Sbjct: 122 QVKGEEPDVLEVGPLIINKDSHEVKTVEGKEIQLTALEFGILYLLASHPNRVFSADEIFE 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221 ++ + V V H+S LR K+ + G + + + +GY ++ Sbjct: 182 RVW-QQESIVSAKTVMVHVSHLRDKIHKATDGEEVIKTVWGVGYKVE 227 >gi|294146553|ref|YP_003559219.1| two-component system response regulator [Sphingobium japonicum UT26S] gi|292676970|dbj|BAI98487.1| two-component system response regulator [Sphingobium japonicum UT26S] Length = 236 Score = 137 bits (346), Expect = 8e-31, Method: Composition-based stats. Identities = 54/225 (24%), Positives = 91/225 (40%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ + FG G+ E D+ ++ L Sbjct: 5 ILIVDDDPHIRQLLVFAFGKAGLETIEAADGEAALAAVERHAPDLVILDIN--MPRMDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +RAH VP+ +S + + G DD V KP RE++AR AI RR Sbjct: 63 EVCRRLRAHDDVPIFFLSSRDDEIDRVLGIELGGDDYVVKPFSPREVVARSMAILRRASA 122 Query: 122 SNN------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 G + + ++ G L E IL L+A + ++ QI Sbjct: 123 RPPAVEAIGAIRHGRLSLDTESWSAHWGGAEVSLTVTEFTILRTLLAMPSRIFSRDQIID 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G A+ + V+SHI LR+K + GFD ++++ +GY + Sbjct: 183 RFRG-PGFALTDRTVDSHIRNLRRKFADVGGFDIIETRPGIGYRL 226 >gi|169343156|ref|ZP_02629700.2| DNA-binding response regulator [Clostridium perfringens C str. JGS1495] gi|169298794|gb|EDS80869.1| DNA-binding response regulator [Clostridium perfringens C str. JGS1495] Length = 223 Score = 137 bits (346), Expect = 8e-31, Method: Composition-based stats. Identities = 40/225 (17%), Positives = 85/225 (37%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +G + L + D+ ++A L Sbjct: 3 ILVVDDEVSILQLIKMNLEIEGHVPITAENALDALELVIKEKPDIIILDAML--PDISGF 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L I+ +P+I ++ + L G DD + KP + E++ R+ + + + Sbjct: 61 NLIPKIKNIDDIPIIMLTAKSDINDKLLGLQLGADDYITKPFNSTELILRINIVGKHISS 120 Query: 122 SNNRAETGPIRVF----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + D R ++ E L +E +L L N+ K ++ ++ + + Sbjct: 121 DSKKKVKDLTVGDLTLFLDERKALIKSEYINLTFKEFEVLRCLCQNKNKVFSREELLNKV 180 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +G +D V+ I +LRKKL + + + GY +D Sbjct: 181 WG-YDFEGTTRAVDILIQRLRKKLG--PCQNYIKTLYKAGYKLDE 222 >gi|124024913|ref|YP_001014029.1| two-component response regulator [Prochlorococcus marinus str. NATL1A] gi|123959981|gb|ABM74764.1| two-component response regulator [Prochlorococcus marinus str. NATL1A] Length = 265 Score = 137 bits (346), Expect = 8e-31, Method: Composition-based stats. Identities = 42/229 (18%), Positives = 86/229 (37%), Gaps = 10/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +LI+D ++D G ++ + L D+ ++ L G + Sbjct: 5 ILLIEDDQDMRDLVAGHLEHTGFDVQKAEDGIKGQALALQYAPDLILLDLMLPKVDGLTL 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R S +P++ I+ ++ + F+SG DD + KP E+ R+ A+ RR Sbjct: 65 CQRLRRDERTSAIPILMITALGGIKDKVTGFNSGADDYITKPFDLEELQVRIKALLRRTN 124 Query: 121 VSNNRAETGPIRVFS-------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + + + + L E +L LM G+ VA + I Sbjct: 125 RAPLGSNNQQEILDYGPLTLVPERFEAIWFESPVRLTHLEFELLHCLMQRHGQTVAPSLI 184 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 ++G ++ + + H+ LR KL + + + GY ++ Sbjct: 185 LKEVWG-YEPDDDIETIRVHVRHLRTKLEPDPRKPRFIKTVYGAGYCLE 232 >gi|222056601|ref|YP_002538963.1| two component transcriptional regulator, winged helix family [Geobacter sp. FRC-32] gi|221565890|gb|ACM21862.1| two component transcriptional regulator, winged helix family [Geobacter sp. FRC-32] Length = 222 Score = 137 bits (346), Expect = 8e-31, Method: Composition-based stats. Identities = 46/222 (20%), Positives = 82/222 (36%), Gaps = 5/222 (2%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 M ++++D + + + + ++ ++ L GKG Sbjct: 4 MILIVEDEEKLAKLLADYLHQADYETHCLSDGSRVVPWIQAQKPEMILLDLMLPGKG--G 61 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ + IR+ S VP+I I+ L + G DD + KP RE+ R Sbjct: 62 LEICKEIRSFSSVPIIMITARVEEIDRLLGLELGADDYICKPFSPREV-VARVKAVLRRA 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + + L E ++L L A+ G+ + Q+ IY Sbjct: 121 HGAEAVNGKELVLDDSRYRAMLHDRDLHLTAVEFKLLSLLAASPGRIFGRQQLMDHIY-P 179 Query: 181 FDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221 V + ++SHI KLR+KL G + + S GY + Sbjct: 180 DQRIVSDRTIDSHIKKLRRKLSGADPGQEYIHSLYGAGYKFE 221 >gi|77460250|ref|YP_349757.1| two component transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77384253|gb|ABA75766.1| two-component system, response regulator [Pseudomonas fluorescens Pf0-1] Length = 241 Score = 137 bits (346), Expect = 8e-31, Method: Composition-based stats. Identities = 45/226 (19%), Positives = 89/226 (39%), Gaps = 7/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD ++ G + + + + D+ ++ L Sbjct: 7 ILVIDDEPQIRKFLRISLASQGYKVLEAGTGAEGLAQAALNKPDLLVLDLGL--PDMDGQ 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R R + P++ +S S + D G +D V KP +E LARV A+ R+ Sbjct: 65 QVLREFREWATAPVLVLSVRASEGQKVQALDGGANDYVTKPFGIQEFLARVRALLRQAPA 124 Query: 122 SNNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + GP+ V R + G L R+E +L L + G+ + + Q+ I+ Sbjct: 125 GEAQQAALNFGPLTVDLAYRRVLLDGVEVGLTRKEYAVLAQLARHPGRVITQQQLLKDIW 184 Query: 179 GLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDWN 223 G + + + + LR+KL + + ++ +GY + N Sbjct: 185 GPTHTE-DSHYLRIVVGHLRQKLADDPTRPRFIVTEAGVGYRLLDN 229 >gi|110639416|ref|YP_679625.1| two-component response regulator [Cytophaga hutchinsonii ATCC 33406] gi|110282097|gb|ABG60283.1| two-component response regulator [Cytophaga hutchinsonii ATCC 33406] Length = 228 Score = 137 bits (346), Expect = 8e-31, Method: Composition-based stats. Identities = 41/223 (18%), Positives = 88/223 (39%), Gaps = 9/223 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 +++DD + + +G + N+ + ++ + G + Sbjct: 7 ILIVDDEQDIIELLEYNLTKEGYDVRTANNGLKAIEEAKDFLPQLILMDIMMPKMDGVES 66 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 R I + +I ++ + + F++G DD + KPI R +++RV+A +RR Sbjct: 67 CRKIREIPKLKESYIIFLTARSEEFSEIAAFEAGADDFITKPIKPRALISRVSAFFRRGT 126 Query: 121 VSNNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + N E+ I+ + LP++E +L +L + ++ I Sbjct: 127 KNTNEKESVVIKDLVIDRSSYTVMKGPDKIILPKKEFELLYFLANRPNTVFNRDELLKNI 186 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G V V+ HI K+R+K+ D + + + +GY Sbjct: 187 WGTDVYVV-PRTVDVHIRKVREKIGE----DYITTIKGIGYKF 224 >gi|254427529|ref|ZP_05041236.1| response regulator receiver domain protein [Alcanivorax sp. DG881] gi|196193698|gb|EDX88657.1| response regulator receiver domain protein [Alcanivorax sp. DG881] Length = 240 Score = 137 bits (346), Expect = 8e-31, Method: Composition-based stats. Identities = 44/226 (19%), Positives = 93/226 (41%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + D +G+ + + E + + D+ ++ L G L Sbjct: 11 IMIVEDDERLADLTCEYLQSNGLDVTVVSDGEEAIRRIRAEQPDLVVLDLML--PGADGL 68 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------AI 115 + R +R+ + P++ ++ + + G DD V KP+ R +LAR+ Sbjct: 69 TVCREVRSAYKNPILMLTARTDDMDQVLGLEMGADDYVAKPVKPRVLLARIRALLRRVET 128 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 S R E G + + + R+ + GE L E +L L +N G +++ IF Sbjct: 129 DSERDNSPARLEFGALVIDNSAREVTLAGESVDLTSAEYDLLWLLASNAGTVLSRETIFE 188 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 + G+ ++ ++ IS++R K+ + + + R GY Sbjct: 189 KLRGI-QYDGQDRSIDVRISRIRPKVGDDPENPKRIKTVRSKGYLF 233 >gi|89895456|ref|YP_518943.1| hypothetical protein DSY2710 [Desulfitobacterium hafniense Y51] gi|89334904|dbj|BAE84499.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 239 Score = 137 bits (346), Expect = 8e-31, Method: Composition-based stats. Identities = 49/228 (21%), Positives = 85/228 (37%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +L+DD ++ + + +G + S + + L + + V ++ L Sbjct: 9 LLLVDDEPDLRGMLVEILQKEGFQRVRTAASCQQAKELFQTEQPQVVILDVSL--PDGDG 66 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-------ILARVA 113 L +R+ S VP++ +S ++ L G DD + KP RE +L R Sbjct: 67 FSLMAELRSFSAVPVLFLSARDEDESRLLGLGLGADDYITKPFLPRELLLRLKAVLTRTY 126 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + G V + G L +E +LE L NRG V + Sbjct: 127 FPPTLRQSKKPLFRLGEAAVDLNSALVIRPGGEVTLTAKEYILLEKLYENRGNIVTGDSL 186 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 +G D EN + HI +LR+K+ + + R LGY + Sbjct: 187 CRTAWG-DDLYGYENTLMVHIRRLREKIEPEPSSPCYLLTVRGLGYKL 233 >gi|117925190|ref|YP_865807.1| two component transcriptional regulator [Magnetococcus sp. MC-1] gi|117608946|gb|ABK44401.1| two component transcriptional regulator, winged helix family [Magnetococcus sp. MC-1] Length = 235 Score = 137 bits (346), Expect = 8e-31, Method: Composition-based stats. Identities = 49/227 (21%), Positives = 91/227 (40%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA-REDVSAIEAFLIG-KGEK 59 ++++D + F G + L S D+ ++ L G G Sbjct: 5 ILIVEDETDLLRTLEYNFTQAGFDTVTTTNGREAIRLVSQKPEPDLVVLDLMLPGISGYD 64 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVA 113 V + R + ++P+I ++ FD+G DD V KP RE+ L R A Sbjct: 65 VCKTLRDRESTRKIPIIMLTARGESLDQEMGFDAGADDYVTKPFSMRELLLRVKALMRRA 124 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + GP+ V V G+ L E ++L + NRG+ + + + Sbjct: 125 QVVSLPSAAVEDLCFGPLTVDQTAHQVWVNGQEVQLTYMEFKLLVAFLENRGRLLTRDFL 184 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++GL AV+ +++H+ +LR+KL + +++ R GY Sbjct: 185 LDEVWGLS-AAVQTRTIDTHVKRLRQKLSDAG--QYIETLRGAGYRF 228 >gi|329923332|ref|ZP_08278816.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] gi|328941424|gb|EGG37716.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] Length = 228 Score = 137 bits (346), Expect = 8e-31, Method: Composition-based stats. Identities = 43/225 (19%), Positives = 83/225 (36%), Gaps = 10/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + +D ++ E + ++ G+ Sbjct: 7 ILVVDDDQSIVELLRDFLENDSFHVKTACDAEEAWAIFQQHAIHCMVLDIM--MPGQNGF 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYR 117 EL R IRA S VP++ +S + G DD + K EI+ARV Sbjct: 65 ELCRRIRAESHVPILFLSARSDDVDKIRGLTLGGDDYIVKTASPGEIVARVKAVLRRSAT 124 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 R V + G +R+ R+ V+G L +E +L + Q+ + Sbjct: 125 RQPVEGRVLDYGRLRLNLSTREVVVEGNNVVLTPKEFELLRLFAEHPRHVFTYDQLLAKF 184 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSID 221 + D + + + H+S+LR+K+ + + +GY + Sbjct: 185 W---DGVGDRHTIRVHLSRLREKIEADPNQSQFLVNVWGVGYRFE 226 >gi|315605837|ref|ZP_07880869.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str. F0310] gi|315312535|gb|EFU60620.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str. F0310] Length = 234 Score = 137 bits (346), Expect = 8e-31, Method: Composition-based stats. Identities = 53/224 (23%), Positives = 96/224 (42%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++D + G + +R D+ ++ L Sbjct: 10 LLVVDDEPNIRDLLASSLRFAGFDVVTAEDGSGAFHEAQESRPDLIVLDVML--PDMDGF 67 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R +R A P++ ++ ++ + G DD V KP E++AR+ AI RR Sbjct: 68 TVTRRLRDAGITTPVLFLTARDDMRDKIQGLTVGGDDYVTKPFGLEEVVARIRAILRRTM 127 Query: 121 VSNNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 G + + D + G L E ++L YL+ N G+ V+K QI + Sbjct: 128 GGEEEDALLRVGDLVIDEDAHEVTRAGVQIDLSPTEFKLLRYLVINAGRVVSKMQILDHV 187 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220 + +D E +VES+IS LR+KL + + + +KR +GY + Sbjct: 188 W-EYDWDGEVAIVESYISYLRRKLAVEGASGELIHTKRGVGYIL 230 >gi|229072725|ref|ZP_04205927.1| DNA-binding response regulator [Bacillus cereus F65185] gi|228710701|gb|EEL62674.1| DNA-binding response regulator [Bacillus cereus F65185] Length = 224 Score = 137 bits (346), Expect = 8e-31, Method: Composition-based stats. Identities = 43/226 (19%), Positives = 90/226 (39%), Gaps = 12/226 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +++ +G + + DV ++ L Sbjct: 4 ILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALERWNEG-PDVLILDVML--PDTDGY 60 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL R+ R +P++ ++ + L G DD V KP ++ E++ R+ + RR+K Sbjct: 61 ELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRIKNMARRVK 120 Query: 121 VSNNRAETG-----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + I V R V G+ L RE + + ++N + + ++ Sbjct: 121 KTEAAVSHEVIEAGEIVVCPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 180 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G F+ V+ + +LRKKL + + + +GY +D Sbjct: 181 KVWG-FEYIGNTRAVDIMVQRLRKKLGTSG--EYIKTIYGVGYKLD 223 >gi|38347964|ref|NP_941213.1| DNA-binding transcriptional activator CusR [Serratia marcescens] gi|156936338|ref|YP_001440254.1| DNA-binding transcriptional activator CusR [Cronobacter sakazakii ATCC BAA-894] gi|157412123|ref|YP_001481464.1| DNA-binding transcriptional activator CusR [Escherichia coli APEC O1] gi|170766561|ref|ZP_02901014.1| transcriptional activator protein CopR [Escherichia albertii TW07627] gi|218697185|ref|YP_002404852.1| DNA-binding transcriptional activator CusR [Escherichia coli 55989] gi|237728472|ref|ZP_04558953.1| SilR [Citrobacter sp. 30_2] gi|238910394|ref|ZP_04654231.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|295697874|ref|YP_003602531.1| DNA-binding transcriptional activator CusR [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|296105224|ref|YP_003615370.1| DNA-binding transcriptional activator CusR [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|38259441|emb|CAE51669.1| probable transcriptional regulatory protein(silver resistance) [Serratia marcescens] gi|99867148|gb|ABF67793.1| SilR [Escherichia coli APEC O1] gi|156534592|gb|ABU79418.1| hypothetical protein ESA_04238 [Cronobacter sakazakii ATCC BAA-894] gi|170123999|gb|EDS92930.1| transcriptional activator protein CopR [Escherichia albertii TW07627] gi|218353917|emb|CAV00347.1| DNA-binding response regulator in two-component regulatory system with CusS [Escherichia coli 55989] gi|226909950|gb|EEH95868.1| SilR [Citrobacter sp. 30_2] gi|295059683|gb|ADF64421.1| DNA-binding transcriptional activator CusR [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295059986|gb|ADF64723.1| DNA-binding transcriptional activator CusR [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|322614029|gb|EFY10965.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322617921|gb|EFY14814.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625465|gb|EFY22291.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629930|gb|EFY26703.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632181|gb|EFY28932.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636468|gb|EFY33175.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322644676|gb|EFY41212.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322651301|gb|EFY47685.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322652785|gb|EFY49124.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322659087|gb|EFY55339.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663211|gb|EFY59415.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668698|gb|EFY64851.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674498|gb|EFY70591.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322678296|gb|EFY74357.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682447|gb|EFY78468.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322684160|gb|EFY80166.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323192284|gb|EFZ77516.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323196289|gb|EFZ81441.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323201437|gb|EFZ86503.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323206453|gb|EFZ91414.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323212045|gb|EFZ96872.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216950|gb|EGA01673.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323220317|gb|EGA04771.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323224364|gb|EGA08653.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323228292|gb|EGA12423.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233440|gb|EGA17533.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323237098|gb|EGA21165.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323243687|gb|EGA27703.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323246071|gb|EGA30058.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323250847|gb|EGA34725.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323257657|gb|EGA41343.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323261866|gb|EGA45433.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323267742|gb|EGA51224.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323268622|gb|EGA52089.1| DNA-binding transcriptional activator CusR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|323974959|gb|EGB70069.1| heavy metal response regulator [Escherichia coli TW10509] Length = 226 Score = 137 bits (346), Expect = 8e-31, Method: Composition-based stats. Identities = 37/224 (16%), Positives = 99/224 (44%), Gaps = 6/224 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G ++ ++ L +A D+ ++ L Sbjct: 3 ILIVEDEIKTGEYLSKGLTEAGFVVDHADNGLTGYHLAMTAEYDLVILDIML--PDVNGW 60 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118 ++ R++R A +P++ ++ +++ + + G DD + KP E+LARV Sbjct: 61 DIIRMLRTAGKGMPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGN 120 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++ ++ + + + R G L +E +LE+ + ++G+ + ++ I S ++ Sbjct: 121 TMITESQFKVADLSIDLVSRKVSRAGNRIVLTSKEFSLLEFFIRHQGEVLPRSLIASQVW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + + + N ++ + +LR K+ N + + R +GY ++ Sbjct: 181 DM-NFDSDTNAIDVAVKRLRAKIDNDYETKLIQTVRGVGYMLEV 223 >gi|329939486|ref|ZP_08288822.1| two-component system response regulator [Streptomyces griseoaurantiacus M045] gi|329301715|gb|EGG45609.1| two-component system response regulator [Streptomyces griseoaurantiacus M045] Length = 233 Score = 137 bits (346), Expect = 8e-31, Method: Composition-based stats. Identities = 47/231 (20%), Positives = 92/231 (39%), Gaps = 20/231 (8%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 + ++D ++++ DG ++ S R D++ ++ + G + Sbjct: 8 LFVEDDDVIREATQLALERDGFAVTAMPDGLSGLESFRSRRPDIALLDVMV--PGLDGVS 65 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R IR S VP+I +S + ++G DD V KP ++AR+ A+ RR + Sbjct: 66 LCRRIRDESNVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRRFGHA 125 Query: 123 NNRAETGPIR-------------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 V + G + G L E R+L A G ++ Sbjct: 126 GGMRGEEDDPAAEGGVLTFGELEVDTGGMEVRRSGRPVSLTPTEMRLLLEFSAVPGTVLS 185 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + ++ ++ + + VV+ H+ +LR K+ G D +++ R GY + Sbjct: 186 RDKLLERVWD-YGWGGDTRVVDVHVQRLRTKI----GQDRIETVRGFGYKL 231 >gi|296330321|ref|ZP_06872802.1| two-component response regulator (YvcQ) [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305676074|ref|YP_003867746.1| two-component response regulator [Bacillus subtilis subsp. spizizenii str. W23] gi|296152589|gb|EFG93457.1| two-component response regulator (YvcQ) [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305414318|gb|ADM39437.1| two-component response regulator (paired with YvcQ) [Bacillus subtilis subsp. spizizenii str. W23] Length = 237 Score = 137 bits (346), Expect = 8e-31, Method: Composition-based stats. Identities = 45/230 (19%), Positives = 94/230 (40%), Gaps = 11/230 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + G ++ L + + + D+ ++ L Sbjct: 4 ILLVEDDERIASLLGGHLQKYGYEVKIAEQLNDIKLEFTEMKPDLVLLDINL--PFFDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 R IR S P+I IS + ++G DD + KP H ++A++ ++ RR Sbjct: 62 YWCRQIRTISNAPIIFISARTDELNQVMAIENGGDDYITKPFHLEVVMAKIKSVLRRTYG 121 Query: 122 SNNRAETGPIRV--------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + + R+ + D + E ++E ++L + K V++ ++ Sbjct: 122 EYSPSLSQESRIVELGGLTVYPDQNEAEWNSTRILFSQKEFQLLSIFVREHKKIVSRDEL 181 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 A++ D V++N + ++++LRKKL N D + + R GY N Sbjct: 182 LEALWDDVDF-VDDNTLTVNVNRLRKKLENAGLKDCISTIRGQGYQFQVN 230 >gi|227550620|ref|ZP_03980669.1| response regulator [Enterococcus faecium TX1330] gi|257896267|ref|ZP_05675920.1| transcriptional regulator [Enterococcus faecium Com12] gi|227180244|gb|EEI61216.1| response regulator [Enterococcus faecium TX1330] gi|257832832|gb|EEV59253.1| transcriptional regulator [Enterococcus faecium Com12] Length = 236 Score = 137 bits (346), Expect = 8e-31, Method: Composition-based stats. Identities = 42/227 (18%), Positives = 91/227 (40%), Gaps = 9/227 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD + + ++G + + D+ + ++ + Sbjct: 10 ILIADDDKEIVELLSIYIHNEGYEAVKAYDGKEALSKIRTI-PDIELLILDIMMPEMDGM 68 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + +R SQ+P+I ++ + + +G DD V KP + E++ARV ++ RR K+ Sbjct: 69 QVVKELRKESQIPIIMLTAKTTDMDKIKGLVAGADDYVTKPFNPLEVMARVKSLLRRTKM 128 Query: 122 SNNRAETGPIRVFSDGRDPEVQG------EVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + V + + + + L E IL L ++ + + +IF Sbjct: 129 QIAPDQPDVLEVNALIINKDSHEVKTIDGKEIQLTALEFGILYLLASHPNRVFSADEIFE 188 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221 ++ + V V H+S LR K+ G + + +GY ID Sbjct: 189 RVW-KQESIVSAKTVMVHVSHLRDKIEEATGGEKVIQTVWGVGYKID 234 >gi|169634809|ref|YP_001708545.1| positive response regulator for the pho regulon, autophosphorylates and phosphorylates sensor PhoR [Acinetobacter baumannii SDF] gi|169153601|emb|CAP02784.1| positive response regulator for the pho regulon, autophosphorylates and phosphorylates sensor PhoR [Acinetobacter baumannii] Length = 236 Score = 137 bits (346), Expect = 8e-31, Method: Composition-based stats. Identities = 39/224 (17%), Positives = 87/224 (38%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ G + + R + ++ L G G + Sbjct: 6 ILIVDDELPIREMIHTSLDMAGFQCLQAEDAKQAHQIIVDQRPALILLDWMLPG-GVSGV 64 Query: 62 ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 +L R ++ +P++ ++ + D+G DD + KP RE+++R+ A+ RR Sbjct: 65 DLCRRLKRDENLAEIPVLMLTARGEEDHKVQGLDAGADDYMTKPFSTRELVSRIKAVLRR 124 Query: 119 LKVSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + + + + E R+L + M + + + Q+ Sbjct: 125 ANALSGEKTIDANGLILDPVSQRVSFGNSILDMGPTEYRLLAFFMTHPERAYTRAQLLDQ 184 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + +E+ ++ HI +LRK L V + R GY Sbjct: 185 VWG-GNVYIEDRTIDVHIRRLRKVLEPFGVDRFVQTVRGTGYRF 227 >gi|206974063|ref|ZP_03234981.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|206748219|gb|EDZ59608.1| DNA-binding response regulator [Bacillus cereus H3081.97] Length = 215 Score = 137 bits (346), Expect = 8e-31, Method: Composition-based stats. Identities = 38/220 (17%), Positives = 96/220 (43%), Gaps = 11/220 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++ DD + A F +G + E + + D++ ++ + Sbjct: 4 LIADDEQDMLRILKAYFEKEGFEVFLAKDGEEALQIFYDEKIDLAILDWM--MPKHSGIT 61 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + I+ +S V ++ ++ + L SG D+ V KP H ++ R ++L Sbjct: 62 VCQEIKKNSSVKVLMLTAKSESEDELAALQSGADEYVKKPFHPGVLITRA----KKLIQH 117 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 ++ + +++ + + + E +++ ++++G + + ++ ++G FD Sbjct: 118 DDVIQVQDLKIDFTKNKVYKNDKELDITKTELELIKCFLSHKGMILTRKKLLDIVWG-FD 176 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 EE V++H+ +LRKK+ + + + R LGYS++ Sbjct: 177 YFGEERTVDTHVRRLRKKVGE----NIIKTHRGLGYSLEE 212 >gi|167760380|ref|ZP_02432507.1| hypothetical protein CLOSCI_02754 [Clostridium scindens ATCC 35704] gi|167662053|gb|EDS06183.1| hypothetical protein CLOSCI_02754 [Clostridium scindens ATCC 35704] Length = 231 Score = 137 bits (346), Expect = 8e-31, Method: Composition-based stats. Identities = 50/230 (21%), Positives = 87/230 (37%), Gaps = 14/230 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + + + + D+ ++ + + Sbjct: 3 ILLVEDDREISEMLEEFLIQEAFEVVPAFDGLEACEKFEDGEFDLVLLDLMI--PKMSGM 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + IR S VP++ +S SL + G DD + KP E+LAR+ A RR Sbjct: 61 DVMKTIREKSVVPILIVSAKDSLLDKSLGLELGADDYITKPFVMAEVLARIKANLRRTNQ 120 Query: 122 S----------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 G I++ +G+ L +E IL LM N K K Sbjct: 121 YAAGSSRKQEEPATLSCGDIQLNPADFTVRKRGKKIDLTAKEFEILRLLMQNPKKVYTKE 180 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 QI+S ++ +EN V HIS+LR K+ + + + + GY I Sbjct: 181 QIYSLVW-EDAYLGDENAVNVHISRLRNKIEDDARNPEYIITVWGFGYRI 229 >gi|153953595|ref|YP_001394360.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|146346476|gb|EDK33012.1| Transcriptional regulator [Clostridium kluyveri DSM 555] Length = 230 Score = 137 bits (346), Expect = 8e-31, Method: Composition-based stats. Identities = 46/226 (20%), Positives = 89/226 (39%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + + ++ + E S + ++ L + Sbjct: 6 ILIVEDDEEINNLIYNTLKREKYNMIQAFNGEDAINKYHSDNFQLVILDLML--PYIDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR S VP+I +S + G DD + KP RE+ ARV + RR Sbjct: 64 EVLRKIRESSTVPIIILSAKDQETDRIIGLGMGADDYIVKPFSIRELTARVKSQLRRYIS 123 Query: 122 SNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 N PI ++D + + L +E ++L+ + N + K QIF+ Sbjct: 124 YNKEYSKNPILQYADLKLNTLNYKVSKKNKELNLTPKEFQLLKLFLENPDRVFTKAQIFN 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++ ++N V HI +LR K+ + + + +GY + Sbjct: 184 NVW-ENKYIHDDNTVMVHIKRLRNKIEDTPNNPKYISTVWGIGYKL 228 >gi|332977099|gb|EGK13903.1| DNA-binding response regulator [Desmospora sp. 8437] Length = 227 Score = 137 bits (346), Expect = 8e-31, Method: Composition-based stats. Identities = 43/223 (19%), Positives = 84/223 (37%), Gaps = 8/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L+DD V +G + + + + ++ L + Sbjct: 5 LLLVDDEEQVLQFMEPFLRQEGFQILTAQTGSEALEKAGEKKPALVVLDWML--PEMSGI 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R S++ +I ++ + + G DD + KP RE+ AR+ ++ RR++ Sbjct: 63 EVCRELRKMSRMGIIMVTARTEETDKIIGLEVGADDYITKPFSLRELAARIRSVLRRMEG 122 Query: 122 SNNRAETGPIRVFSDG---RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + QG+ PL E R+L L A G ++ + Sbjct: 123 LEFTEQQMQRGELLISESQCRAWKQGKEIPLTPTEFRLLLTLAAKPGIVYSR--LQLLAA 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + +E V++HIS+LRKK+ + + + GY Sbjct: 181 LEDELLNDERTVDAHISRLRKKIEDAPSDPVYIQTVYGFGYRF 223 >gi|260600057|ref|YP_003212795.1| Transcriptional regulatory protein pcoR [Cronobacter turicensis z3032] gi|260219404|emb|CBA34756.1| Transcriptional regulatory protein pcoR [Cronobacter turicensis z3032] Length = 231 Score = 137 bits (346), Expect = 8e-31, Method: Composition-based stats. Identities = 39/222 (17%), Positives = 94/222 (42%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D ++G + FN+ S + D+ ++ L G ++ Sbjct: 9 ILIVEDEQKTGRYLQQGLVEEGYQADLFNNGRDGLGAASKGQYDLIILDVMLPFLDGWQI 68 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119 + R + + P++ ++ +++ + + G DD + KP E++ARV + R Sbjct: 69 ISALRE--SGHEEPVLFLTAKDNVRDKVKGLELGADDYLIKPFDFTELVARVRTLLRRAR 126 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + V R G+ L +E +LE L+ G+ + ++ I S ++ Sbjct: 127 SQAATVCTIADMTVDMVRRTVIRSGKKIHLTGKEYVLLELLLQRTGEVLPRSLISSLVWN 186 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + + NV++ + +LR K+ + + + R GY ++ Sbjct: 187 M-NFDSDTNVIDVAVRRLRSKIDDDFEPKLIHTVRGAGYVLE 227 >gi|302873161|ref|YP_003841794.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] gi|307688674|ref|ZP_07631120.1| two component transcriptional regulator, winged helix family protein [Clostridium cellulovorans 743B] gi|302576018|gb|ADL50030.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] Length = 230 Score = 137 bits (346), Expect = 8e-31, Method: Composition-based stats. Identities = 42/226 (18%), Positives = 90/226 (39%), Gaps = 8/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD + + ++ E + ++ + + Sbjct: 5 ILIADDNFEIIKILKPYIEKENFNVIFAFDGEEALLKFDHYNPQLVLLDIMMPL--IDGI 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ IR S P+I I+ + +SG DD + KP E++AR+ A+ RR+ Sbjct: 63 EVCNRIREKSNTPIIMITAKSEDADKILGLNSGADDYIIKPFSPGEVVARIKAVLRRITP 122 Query: 122 SNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 N + P+ + + ++ GE L ++E +L L ++ K + + + I Sbjct: 123 VENSTLSVVKYPPMEIDINNYSVKIHGENINLTKKEIEVLWMLTSSPNKVIKRDDLLDNI 182 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSIDW 222 +G+ D + V++HI ++R KL + + + +GY + Sbjct: 183 WGI-DYFGDPRTVDTHIKRIRAKLALNGQYSWDIKTIWGMGYKFEV 227 >gi|228933518|ref|ZP_04096369.1| Uncharacterized sensory transduction protein ykoG [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228826116|gb|EEM71898.1| Uncharacterized sensory transduction protein ykoG [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 227 Score = 137 bits (346), Expect = 8e-31, Method: Composition-based stats. Identities = 45/224 (20%), Positives = 92/224 (41%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G E + + D+ ++ L L Sbjct: 5 ILIVEDEEKIARVVQLELEFEGYESEIAKTGTEAMEKFGNGNWDLILLDVML--PNISGL 62 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIY 116 E+ R IR ++ +P+I ++ S+ + D G D + KP I A + Sbjct: 63 EVLRRIRLKNAVIPIILLTARDSVVDKVSGLDQGASDYITKPFQIEELLARIRACLRISN 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + N+ + + + R+ + + L RE +L +LM + + + + QI + Sbjct: 123 VVKEEENSSYQIADLYLDEKTREVKRGNSLIDLTPREFDLLLFLMKHENQVLNREQIVTN 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G FD + NVV+ +I LRKK+ + V + R +GY + Sbjct: 183 VWG-FDYYGDTNVVDVYIRYLRKKVDCNVDVPLVHTVRGVGYVL 225 >gi|254520350|ref|ZP_05132406.1| DNA-binding response regulator [Clostridium sp. 7_2_43FAA] gi|226914099|gb|EEH99300.1| DNA-binding response regulator [Clostridium sp. 7_2_43FAA] Length = 226 Score = 137 bits (346), Expect = 8e-31, Method: Composition-based stats. Identities = 30/221 (13%), Positives = 88/221 (39%), Gaps = 6/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D ++ + + + ++ E L + ++ ++ L G Sbjct: 4 ILLVEDEESIRAFLKINLQRNNLQVIEASTGEEGLKLANIENPKIAVLDVML--PGIDGF 61 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119 ++ +R + +I ++ + + G DD + KP + E++ R+ A + R Sbjct: 62 KVCNKLRSEFPGMGIIMLTAKGQDMDKIMGLEYGADDYIVKPFNPLEVVLRIKALLRRLG 121 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++ E GP + + + +E +++ + N K + ++ ++G Sbjct: 122 DEDKDKLELGPFLIDLYSQKVLKDNIEIDVTPKEYLLMKIFLENPNKAFTRDELLDLVWG 181 Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYS 219 + + +++ +I +LR K+ + +++ +GY Sbjct: 182 E-NYFGDAKIIDVNIRRLRAKIEDNASDPKYIETIWGIGYR 221 >gi|225017492|ref|ZP_03706684.1| hypothetical protein CLOSTMETH_01419 [Clostridium methylpentosum DSM 5476] gi|224949731|gb|EEG30940.1| hypothetical protein CLOSTMETH_01419 [Clostridium methylpentosum DSM 5476] Length = 237 Score = 137 bits (346), Expect = 8e-31, Method: Composition-based stats. Identities = 40/223 (17%), Positives = 85/223 (38%), Gaps = 8/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ +G + L D+ ++ Sbjct: 19 ILIVDDEEKIRAIIRKYAEFEGYLVSEAADGMEAVKLCRDRDFDILILDVM--MPELDGF 76 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 R IR P++ +S + F+ G+DD V KP RE++ RV + Sbjct: 77 STCREIRKFKNTPVLMLSARGEEYDKIHGFELGIDDYVVKPFSPRELMMRVKAILNRSQP 136 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + A + + GR + + +E +L YL+ N+G + + ++ ++ Sbjct: 137 PQAEKEIAAFEGLTIDFTGRMVYIDDVRIDMSPKEYDLLFYLVKNKGIALTREKLICDVW 196 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 G +D ++ +++HI LR +L + + R +GY + Sbjct: 197 G-YDFYGDDRTLDTHIKLLRGRLGAY--RHYIVTLRGVGYRFE 236 >gi|190576270|ref|YP_001974115.1| putative two-component system response regulator [Stenotrophomonas maltophilia K279a] gi|190014192|emb|CAQ47836.1| putative two-component system response regulator [Stenotrophomonas maltophilia K279a] Length = 229 Score = 137 bits (346), Expect = 8e-31, Method: Composition-based stats. Identities = 51/221 (23%), Positives = 95/221 (42%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + G++ E + + D+ ++ L + + Sbjct: 11 ILIVEDEPRLASVLRDYLAAAGMASEWVDDGGQVIDAFVRYQPDLVLLDLMLPQR--DGV 68 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 +L R +RA S VP+I ++ L + G DD + KP RE++ARV A+ RR + Sbjct: 69 DLCRELRASSDVPVIMVTARVEEIDRLLGLEIGADDYICKPFSPREVVARVMAVLRRYRP 128 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 G + + G+ L E R+L L+A G+ A+ ++ +Y Sbjct: 129 DPGARANGGLHIDEPAARATWNGKGLDLTPVEYRLLRTLLATPGRIWARDELLDRLYLDH 188 Query: 182 DEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 V+ V+SH+ LR+KL + +P+ S +GYS + Sbjct: 189 RVVVD-RTVDSHVRNLRRKLADAGMEGEPIRSVYGMGYSYE 228 >gi|154500018|ref|ZP_02038056.1| hypothetical protein BACCAP_03676 [Bacteroides capillosus ATCC 29799] gi|150271616|gb|EDM98873.1| hypothetical protein BACCAP_03676 [Bacteroides capillosus ATCC 29799] Length = 221 Score = 137 bits (346), Expect = 8e-31, Method: Composition-based stats. Identities = 45/224 (20%), Positives = 93/224 (41%), Gaps = 9/224 (4%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + ++++D D G + + L + D+ ++ L + Sbjct: 3 VIMIVEDDRQTNDAVSEYLKSLGHRMFSAYDGDEALQLFECSNIDLVILDIML--PKKTG 60 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118 L + IRA S VP++ ++ T + FD DD + KP + RV A Sbjct: 61 LAVLHTIRAKSSVPILMLTAISDEYTQVTSFDEQADDYITKPFSMVLLGRRVTALLRRSG 120 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 VS + G + V G + + +E +L+ L+ ++G + ++Q+ +++ Sbjct: 121 QTVSPDTMTFGDVTVDFSGYTAKGPEGKIDITPKEIDLLKLLVEHKGLVLTRSQMLDSLW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 G D + + ++++I LRKKLR D + + + +GY + Sbjct: 181 GA-DYPIIDRTIDTYIKNLRKKLRL----DCIVTVKGIGYKFEV 219 >gi|152998395|ref|YP_001343230.1| two component transcriptional regulator [Marinomonas sp. MWYL1] gi|150839319|gb|ABR73295.1| two component transcriptional regulator, winged helix family [Marinomonas sp. MWYL1] Length = 236 Score = 137 bits (346), Expect = 8e-31, Method: Composition-based stats. Identities = 43/223 (19%), Positives = 95/223 (42%), Gaps = 9/223 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++IDD + +++ G +++ + R D+ ++ G +E Sbjct: 12 LIIDDESSIREMIAIALEMAGYEYLEAENIQQAHEIIVDHRPDLILVDWM--MPGGSGIE 69 Query: 63 LPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYR 117 L R ++ + +P+I ++ + + G DD + KP RE++AR+ A Sbjct: 70 LTRRLKKDTTTAEIPVIMLTAKSEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRRA 129 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + E + + + + + E R+L++LM ++ + ++ Q+ + Sbjct: 130 TPQGVDEPIEIEGLTLDPISQRVTIGSRPLDMGPTEYRLLKFLMTHQERAYSRAQLLDQV 189 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G + VEE V+ HI +LRK + + F + + R GY Sbjct: 190 WG-GNVYVEERTVDVHIRRLRKAIGSTHDF-LIQTVRGTGYRF 230 >gi|37526668|ref|NP_930012.1| DNA-binding transcriptional regulator BaeR [Photorhabdus luminescens subsp. laumondii TTO1] gi|36786100|emb|CAE15152.1| two-component response regulator [Photorhabdus luminescens subsp. laumondii TTO1] Length = 234 Score = 137 bits (346), Expect = 8e-31, Method: Composition-based stats. Identities = 44/220 (20%), Positives = 88/220 (40%), Gaps = 4/220 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + + + + D+ ++ L+ G + Sbjct: 11 LIVEDEPKLGQLLVDYLQAADYETQWLLRGDEAVSHVQQHNPDIILLD--LMLPGCDGIT 68 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR S VP+I ++ L + G DD + KP REI+ARV I RR Sbjct: 69 ICREIRRFSDVPIIMVTAKTEEIDRLLGLEIGADDYICKPYSPREIVARVKTILRRCYRP 128 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 + + + + + ++ L E R+L+ + + G+ ++ ++ + +Y Sbjct: 129 QDIVKQSDLHIDEACFQARYRDKILDLTPVEFRLLKTMASRPGQVFSRDKLLNNLYDDH- 187 Query: 183 EAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 V + ++SHI LR+KL + S LGY + Sbjct: 188 RIVTDRTIDSHIKNLRRKLEQLDNSKTFIRSIYGLGYRWE 227 >gi|289623884|ref|ZP_06456838.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|330869831|gb|EGH04540.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 224 Score = 137 bits (346), Expect = 8e-31, Method: Composition-based stats. Identities = 37/223 (16%), Positives = 87/223 (39%), Gaps = 5/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G ++ + +L DV ++ L Sbjct: 3 ILVVEDEPKTAEYMHQGLTESGYIVDIAATGLDGLYLAQHQAYDVVILDVNL--PEMDGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119 E+ +R ++ ++ L+ + + G DD + +P E+ R Sbjct: 61 EVLSRLRKTVSTRVMMVTARGRLEEKVKGLELGADDYLVEPFEFPELLARVRTLMRRSEQ 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++ + G + + + L +E +L LM + G+ +++TQI S ++ Sbjct: 121 TTTSKVLQVGDLELDQGRHRAFRGSQRIDLTTKEFALLHLLMRHSGEVMSRTQIISLVWD 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + + + NVVE I +LR K+ + + + R +GY ++ Sbjct: 181 M-NFDCDTNVVEVSIRRLRAKIDDPFETKLIHTLRGVGYVLEV 222 >gi|296135841|ref|YP_003643083.1| two component transcriptional regulator, winged helix family [Thiomonas intermedia K12] gi|294340005|emb|CAZ88369.1| Transcriptional regulatory protein ompR [Thiomonas sp. 3As] gi|295795963|gb|ADG30753.1| two component transcriptional regulator, winged helix family [Thiomonas intermedia K12] Length = 242 Score = 137 bits (346), Expect = 8e-31, Method: Composition-based stats. Identities = 41/230 (17%), Positives = 86/230 (37%), Gaps = 14/230 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++D +G + + + R D+ ++ L GE L Sbjct: 9 LMVVDDDARIRDLLRRYLSQEGYEVFVAEDSKAMSRIMVKERFDLIVLDLML--PGEDGL 66 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILAR 111 + + +RA P+I ++ + + G DD + KP + RE Sbjct: 67 SICKRLRASKDQTPIIMLTAKGEDVDRIIGLEVGADDYLPKPFNPRELLARISAVLRRQP 126 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + + GP + R+ GEV L E +L+ L+ + + +++ Sbjct: 127 SPELPGAPSREDETVVFGPFSLDLARRELSKNGEVISLTTGEFAMLKALVRHPRQPLSRD 186 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++ G D + ++ IS+LRK + + + + +GY Sbjct: 187 RLAELARGR-DYEAFDRSLDVAISRLRKIIETDAAHPRYIQTVWGVGYVF 235 >gi|255525477|ref|ZP_05392414.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296188589|ref|ZP_06856977.1| putative subtilin biosynthesis regulatory protein SpaR [Clostridium carboxidivorans P7] gi|255510842|gb|EET87145.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296046853|gb|EFG86299.1| putative subtilin biosynthesis regulatory protein SpaR [Clostridium carboxidivorans P7] Length = 227 Score = 137 bits (346), Expect = 8e-31, Method: Composition-based stats. Identities = 45/227 (19%), Positives = 85/227 (37%), Gaps = 10/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +D + S D+ ++ G+ Sbjct: 5 ILIVDDEEDIISFLKDSLQEDDYEVFVAYSGIEAVEKAKLN-PDLILLDVM--MPGKNGY 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-----ARVAAIY 116 E+ R IR P+I ++ + + G DD ++KP R++ Sbjct: 62 EVCREIRDIVNCPIIFLTAKSEEEDLITGLGVGGDDYISKPFSLRQLKARISAHLRRDQR 121 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + + GR GEV PL ++E ++E L N G+ +K QI+ Sbjct: 122 SFNNENRVNLYFENLNIDLKGRTIFCMGEVIPLTKKEFGVIELLAVNCGQVFSKEQIYEK 181 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDW 222 I+G +D + V HI K+R KL+ + + + +GY + Sbjct: 182 IWG-YDAEGDSATVAEHIKKIRYKLKKYDKDREYISTVWGVGYKWEK 227 >gi|228996979|ref|ZP_04156612.1| Two-component response regulator vanR [Bacillus mycoides Rock3-17] gi|229007887|ref|ZP_04165458.1| Two-component response regulator vanR [Bacillus mycoides Rock1-4] gi|228753392|gb|EEM02859.1| Two-component response regulator vanR [Bacillus mycoides Rock1-4] gi|228762858|gb|EEM11772.1| Two-component response regulator vanR [Bacillus mycoides Rock3-17] Length = 232 Score = 137 bits (346), Expect = 8e-31, Method: Composition-based stats. Identities = 38/229 (16%), Positives = 82/229 (35%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + DG + + + S ++ ++ + Sbjct: 6 ILIVDDDTDIVQLIEVHLKQDGFKVFRAYNGVEALDILDSNDIQLTILDIM--MPAMDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR--------EILARVA 113 E+ R IR +P++ +S + + +G DD + KP ++ Sbjct: 64 EVCRRIREQYNIPVMFLSAKTTEIDKVIGLSTGADDYITKPFSMMELVARVKAQLRRYTY 123 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 +V N+ + + + R + G+ L + E IL + NR + +I Sbjct: 124 FNQVPSEVHKNKIQIRGLEIDELSRKVLLYGKSINLTKTEYDILHLMAKNRNRVFTLEEI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221 + +I+ N V HI++LR K+ + + +GY I+ Sbjct: 184 YESIWRERAHE-SNNTVMVHIARLRNKIEEDPKKSTIIQNVWGVGYKIE 231 >gi|254468051|ref|ZP_05081457.1| two component transcriptional regulator, winged helix family [beta proteobacterium KB13] gi|207086861|gb|EDZ64144.1| two component transcriptional regulator, winged helix family [beta proteobacterium KB13] Length = 233 Score = 137 bits (346), Expect = 8e-31, Method: Composition-based stats. Identities = 33/227 (14%), Positives = 86/227 (37%), Gaps = 6/227 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D + + + + E E D+ ++ L G Sbjct: 6 ILIVEDEESILEMIALNLHHNNFQPLRAINAEIAESFLKKNEVDLILLDWMLPGMDGIDF 65 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDV--VNKPIHHREILARVAAIYRR 118 L+ R +++P++ ++ ++ FD G DD + ++ Sbjct: 66 LKRIRTNSNTNEIPVMMLTAKNEESNKIEGFDVGADDYLAKPFSQKELIARIKAILRRKK 125 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + G ++V D + Q + L E ++L L N+ + +++ I I+ Sbjct: 126 PDFFPKQIKHGNLQVHPDSHEVFHQSKFIKLGPTEFKLLYLLCMNKNRVLSREIIVDKIW 185 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI--DWN 223 + ++ ++ H+ +LR L++ + +++ R GY + + N Sbjct: 186 NN-ESEIDARTIDVHVKRLRSTLKSHGIENSIETIRGAGYKLSDEIN 231 >gi|49081912|gb|AAT50356.1| PA1437 [synthetic construct] Length = 230 Score = 137 bits (346), Expect = 8e-31, Method: Composition-based stats. Identities = 46/221 (20%), Positives = 91/221 (41%), Gaps = 5/221 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D A D + G +++ ++ L DV ++ L G Sbjct: 4 LIVEDEAKTADYLNRGLSEQGFTVDLADNGIDGRHLALHGEYDVIVLDVML--PGVDGYG 61 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +R Q P+I ++ ++ + G DD + KP E++AR+ A+ RR Sbjct: 62 VLRALRERRQTPVIMLTARERVEDRVRGLREGADDYLIKPFSFLELVARLQALTRRGGNH 121 Query: 123 NNRAETGPIR--VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + ++ + R L +E +L L G+ ++KT I ++ + Sbjct: 122 ESHSQMRIADLSIDLLSRKVFRGNTRLELTAKEYALLCVLAQRSGEILSKTAIAELVWDI 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + NVVE I +LR KL + + R +GY ++ Sbjct: 182 -NLDTDTNVVEVAIKRLRAKLDGPFENKLLHTIRGMGYVLE 221 >gi|317124381|ref|YP_004098493.1| transcriptional regulator [Intrasporangium calvum DSM 43043] gi|315588469|gb|ADU47766.1| two component transcriptional regulator, winged helix family [Intrasporangium calvum DSM 43043] Length = 225 Score = 137 bits (346), Expect = 8e-31, Method: Composition-based stats. Identities = 45/221 (20%), Positives = 88/221 (39%), Gaps = 7/221 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L +D + + +G ++ D+ ++ L LE Sbjct: 5 LLAEDDPAISEPLARALRREGYDVDVREDGAEALEGAKDN-PDLVLLDLGL--PKVDGLE 61 Query: 63 LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R +RA + +P++ ++ T+ D+G DD V KP E+ R Sbjct: 62 VCRRLRAEGRSIPVLILTARADEVDTVVGLDAGADDYVTKPFRLAEL-LARVRALLRRTP 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 ++ +R+ SDGR +GE L +E +L L+ +GK V + Q+ ++ Sbjct: 121 TDVGPTGELVRIDSDGRRAWFKGEELQLTAKEFDVLRVLIREQGKVVPREQLMREVWDTA 180 Query: 182 DEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221 ++ HIS LR+KL + + + R +G+ + Sbjct: 181 -WFGSTKTLDMHISVLRRKLGDDATSPQYIATVRGVGFRFE 220 >gi|229173513|ref|ZP_04301056.1| Two component transcriptional regulator, winged helix [Bacillus cereus MM3] gi|228609895|gb|EEK67174.1| Two component transcriptional regulator, winged helix [Bacillus cereus MM3] Length = 215 Score = 137 bits (346), Expect = 8e-31, Method: Composition-based stats. Identities = 37/220 (16%), Positives = 94/220 (42%), Gaps = 11/220 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++ DD + A F +G + E + + D++ ++ + Sbjct: 4 LIADDEQDMLRILKAYFEKEGFEVLLAKDGEEALQIFYDEKIDLAILDWM--MPKHSGIT 61 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + I+ +S ++ ++ + L SG D+ V KP H ++ R ++L Sbjct: 62 VCQEIKKNSSAKVLMLTAKSESEDELAALQSGADEYVKKPFHPGVLITRA----KKLIQH 117 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 ++ + +++ + + + E +++ + ++G + + ++ ++G FD Sbjct: 118 DDVIQVQDLKIDFTKNKVYKNDKELDITKTELELIKCFLNHKGMILTRKKLLDIVWG-FD 176 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 EE V++H+ +LRKK+ + + + R LGYS++ Sbjct: 177 YFGEERTVDTHVRRLRKKVGE----NIIKTHRGLGYSLEE 212 >gi|218248415|ref|YP_002373786.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 8801] gi|218168893|gb|ACK67630.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8801] Length = 635 Score = 137 bits (346), Expect = 8e-31, Method: Composition-based stats. Identities = 45/222 (20%), Positives = 88/222 (39%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D A +++ N+ E L DV ++ L + Sbjct: 3 ILLIEDDASTSLAISQTLTQKKYAVDAVNNGETGLELAQLFPYDVILLDIML--PQLDGI 60 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R +R + P++ ++ + + ++G DD + KP E+LAR+ A+ RR + Sbjct: 61 TVCRRLRSQQNHTPILLLTAKNHPRDCVMGLEAGADDYLVKPFDWAELLARIQALSRRGQ 120 Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + QG++ L E +LE + + + ++ I I+ Sbjct: 121 QVLPDVLRWENLVLNQKTHEVTYQGQLLHLTPTEYSLLELFLRHPQRVFSRQVIIDQIWT 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 L EE + SHI LR+KL+ + + + GY + Sbjct: 181 LDKVPGEE-TISSHIKALRQKLKAVGMTQNMIKTVYGFGYRL 221 Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 15/102 (14%), Positives = 37/102 (36%), Gaps = 1/102 (0%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +LIDD + A G ++ ++ + + + D+ ++ + G + Sbjct: 510 LMLIDDDPNFLEVLKATLTPWGFNVVSLSNPQQFWPVLEATNPDLLILDLEMPHFSGLNL 569 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102 + R VP++ +S + ++ G D + K Sbjct: 570 CQAVRKDDRFCSVPILFLSGHDDGESIRQMLVHGADCYLPKT 611 >gi|116695586|ref|YP_841162.1| response regulator [Ralstonia eutropha H16] gi|113530085|emb|CAJ96432.1| response regulator, OmpR-family [Ralstonia eutropha H16] Length = 229 Score = 137 bits (346), Expect = 8e-31, Method: Composition-based stats. Identities = 42/221 (19%), Positives = 90/221 (40%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D D + G ++ D+ ++ L G Sbjct: 3 ILIVEDEPKAGDYLHKGLTESGFVVDLARDGADGLAHAREHPYDLIVLDVML--PGLDGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120 ++ R +R P++ ++ L L + G DD + KP E++ R+ I R Sbjct: 61 QVLRELRRERDTPVLFLTARDELSDRLKGLELGADDYMVKPFAFAELVLRIRTILRRGPL 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + E +++ + R G+ L +E +L L RG+ ++++ I S ++ + Sbjct: 121 RESEFIEVADLQIDAIRRRVVRAGQKIDLTSKEFALLYLLARRRGEVLSRSLIASQVWDV 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + NVV+ I +LR K+ + + ++R +GY +D Sbjct: 181 -NFDSNTNVVDVSIRRLRAKVDDPFPHKLIHTRRGMGYVLD 220 >gi|313124626|ref|YP_004034885.1| response regulator consisting of a chey-like receiver domain and a winged-helix DNA-binding domain [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312281189|gb|ADQ61908.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 228 Score = 137 bits (346), Expect = 8e-31, Method: Composition-based stats. Identities = 43/227 (18%), Positives = 94/227 (41%), Gaps = 9/227 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + ++G + + S+ D++ + ++ + Sbjct: 3 ILVVDDDHEIVELLSIYLKNEGYEPIAAYNGKEALTKLSTT-PDIALMILDVMMPNLSGI 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + +R S +P+I +S + +G DD V+KP + E++ARV ++ RR + Sbjct: 62 DVVKEVRKDSDIPIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRRSRK 121 Query: 122 SNNRAETGP------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 E I V+G+ L E IL L ++ + + +IF Sbjct: 122 QVKEEEPDVLEVGPLIINKDSHEVKTVEGKEIQLTALEFGILYLLASHPNRVFSADEIFE 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 ++ + V V H+S LR K++ G + + + +GY ++ Sbjct: 182 RVW-QQESIVSAKTVMVHVSHLRDKIQKATDGEEVIKTVWGVGYKVE 227 >gi|255523345|ref|ZP_05390315.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296188278|ref|ZP_06856670.1| putative regulatory protein VanR [Clostridium carboxidivorans P7] gi|255512999|gb|EET89269.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296047404|gb|EFG86846.1| putative regulatory protein VanR [Clostridium carboxidivorans P7] Length = 231 Score = 137 bits (346), Expect = 8e-31, Method: Composition-based stats. Identities = 38/229 (16%), Positives = 87/229 (37%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ +D + + ++ D+ ++ L Sbjct: 4 ILIAEDDLSIAELQRDYLELSEFEVKICMDGVETLNCLKENEFDLLILDIML--PKIDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R I+ +P++ +S + F+ G DD + KP E++ARV + + + Sbjct: 62 SILRSIQDTKDIPILIVSSKKEEIDKIKGFNLGADDYITKPFSPAELVARVKSHIKNYER 121 Query: 122 SNNRAETGPI---------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 N+ ++ + D R+ V + L ++E +L Y+ N + ++ + Sbjct: 122 IKNKFDSNKKSDTILIRGLEIRKDSREVFVNCKEVTLAQKEFDLLLYMSENPNRVFSREE 181 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 +F ++GL D + + V HI ++R+K +++ GY I Sbjct: 182 LFEKVWGL-DAIGDTSTVTVHIGRIREKTEASPSNPQYIETVWGAGYRI 229 >gi|160900531|ref|YP_001566113.1| two component transcriptional regulator [Delftia acidovorans SPH-1] gi|160366115|gb|ABX37728.1| two component transcriptional regulator, winged helix family [Delftia acidovorans SPH-1] Length = 223 Score = 137 bits (346), Expect = 8e-31, Method: Composition-based stats. Identities = 47/221 (21%), Positives = 92/221 (41%), Gaps = 9/221 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G ++E ++L D + ++ L L Sbjct: 3 ILVVEDEPTLCGQLVQALQQAGHTVETAADGATAQYLGEVEEFDAAVLDLGL--PVRDGL 60 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R RA + +P++ ++ + + D+G DD + KP H E++AR+ A+ RRL Sbjct: 61 TVLRAWRAQGRVMPVMILTARGAWHEKVAGMDAGADDYLAKPFHMEELMARLRALLRRLS 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVF-PLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + V L E ++L LM G+ +++T++ IY Sbjct: 121 PHASAQWQCGPIVLDSRHARVSVAGQPLTLTSHEFKVLALLMQRVGQVISRTELSEHIY- 179 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D + N +E + +LRKKL +++ R LGY + Sbjct: 180 PQDSDRDSNTIEVFVGRLRKKLPAGS----IETVRGLGYRL 216 >gi|325285800|ref|YP_004261590.1| winged helix family two component transcriptional regulator [Cellulophaga lytica DSM 7489] gi|324321254|gb|ADY28719.1| two component transcriptional regulator, winged helix family [Cellulophaga lytica DSM 7489] Length = 229 Score = 137 bits (346), Expect = 8e-31, Method: Composition-based stats. Identities = 37/225 (16%), Positives = 82/225 (36%), Gaps = 11/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 +L+DD + + +G + + + ++ + G + Sbjct: 8 ILLVDDEPDILEIVSYNLSSEGYEVFTAKNGVEAVAKAKKKHPHLIILDVMMPEMDGIEA 67 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAI 115 E+ R + ++ + + FD+G DD + KPI + ++++ Sbjct: 68 CEIIRNTPGLQNTIITFLTARGEDYSQVAGFDAGADDCITKPIKPKVLVSKVKALLRRLK 127 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + G I + + G+ LPR+E +L L + K + I Sbjct: 128 EDNAAEQEDIVKVGNIVINREEYKVINDGQEIVLPRKEFELLALLTSKPNKVYKREVILD 187 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + V ++ HI KLR+K+ + D + + +GY Sbjct: 188 KVWGN-EVVVGGRTIDVHIRKLREKIGD----DHFKTVKGVGYKF 227 >gi|310641017|ref|YP_003945775.1| alkaline phosphatase synthesis transcriptional regulatory proteinphop [Paenibacillus polymyxa SC2] gi|309245967|gb|ADO55534.1| Alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Paenibacillus polymyxa SC2] Length = 253 Score = 137 bits (346), Expect = 8e-31, Method: Composition-based stats. Identities = 48/227 (21%), Positives = 98/227 (43%), Gaps = 12/227 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++D + +G ++ + + + +R DV ++ L Sbjct: 21 LIVDDEQGLRDMLTKVLKKEGFLHVKHAATGQEALQIVMESRIDVIVLDVML--PDNDGF 78 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R +++VP++ ++ + L F G DD + KP + E++AR+ A + V Sbjct: 79 EVCRQMRLYTEVPILFLTARDTDLDKLMGFGIGGDDYITKPFNPLEVVARMKARMKYRNV 138 Query: 122 SNNRAETGPIRVFSDGRD-------PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + + VQ + P RE +L +L + + + Q++ Sbjct: 139 TTADMKPALQTLDFGYFCLELESGALYVQDQEVDCPAREWLLLVFLCKHPNRIFSVRQLY 198 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 AI+ +E V HIS+LRKK+ + + + R LGY + Sbjct: 199 EAIWSET-FLGDEKTVVIHISRLRKKIEPDPKHPQFLVNVRGLGYKM 244 >gi|255527744|ref|ZP_05394598.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296187583|ref|ZP_06855977.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] gi|255508560|gb|EET84946.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296047540|gb|EFG86980.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] Length = 231 Score = 137 bits (346), Expect = 8e-31, Method: Composition-based stats. Identities = 49/228 (21%), Positives = 99/228 (43%), Gaps = 14/228 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + + ++ ++ L D+ ++ + G E Sbjct: 7 LIVDDEINITELISVNLE-ENFNVVCCHNGLDAVELAKKELPDIILLDIMI--PGIDGFE 63 Query: 63 LPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVA 113 + R IR A ++P+I ++ + G DD + KP E+ + R + Sbjct: 64 VCRRIRNDEATKKIPIIMLTVKKEENDKVRGLKLGADDYITKPFGINELLARIDAVLRRS 123 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + S+N + G I + +D + + +G V L RE ++L+ L N+G V++ + Sbjct: 124 DMISASNTSDNIMQIGDIEIDTDKYEVKKKGTVIELTLREFKLLQTLAKNKGNLVSREVL 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 S ++G + + ++ HI KLRKKL + +++ R LGY I Sbjct: 184 LSEVWGCGNL-GDSRTLDVHIRKLRKKLEDNDKFPKYIETVRGLGYMI 230 >gi|229082475|ref|ZP_04214938.1| DNA-binding response regulator [Bacillus cereus Rock4-2] gi|228700907|gb|EEL53430.1| DNA-binding response regulator [Bacillus cereus Rock4-2] Length = 224 Score = 137 bits (346), Expect = 8e-31, Method: Composition-based stats. Identities = 43/226 (19%), Positives = 90/226 (39%), Gaps = 12/226 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +++ +G + + DV ++ L Sbjct: 4 ILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALERWNEG-PDVLILDVML--PDTDGY 60 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL R+ R +P++ ++ + L G DD V KP ++ E++ R+ + RR+K Sbjct: 61 ELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRIKNMARRVK 120 Query: 121 VSNNRAETG-----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + I V R V G+ L RE + + ++N + + ++ Sbjct: 121 KAEAAVSHEVIEAGEIVVCPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 180 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G F+ V+ + +LRKKL + + + +GY +D Sbjct: 181 KVWG-FEYIGNTRAVDIMVQRLRKKLGTSG--EYIKTIYGVGYKLD 223 >gi|220929080|ref|YP_002505989.1| transcriptional regulator [Clostridium cellulolyticum H10] gi|219999408|gb|ACL76009.1| two component transcriptional regulator, winged helix family [Clostridium cellulolyticum H10] Length = 230 Score = 137 bits (346), Expect = 8e-31, Method: Composition-based stats. Identities = 47/227 (20%), Positives = 95/227 (41%), Gaps = 10/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD + D +G + + + + + ++ + Sbjct: 5 ILIADDNEGILDILKTYAAKEGFTPLLAHDGIEAVDIF--NKYSPLLLLLDVMMPKKDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR +S VP+I I+ + D G DD + KP E++AR+ AI RR+ + Sbjct: 63 EVCREIRQNSNVPIIMITAKAEEADRIMGLDIGADDYIVKPFSPGEVMARIRAILRRVDI 122 Query: 122 SNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 S+ + + +V G L ++E IL L N GK ++ + ++ Sbjct: 123 SDEDDKKIIQHPGLEINISDYEVKVNGSPVNLTKKEIEILWLLSNNPGKVFSRDNLLDSV 182 Query: 178 YGLFDEAVEENVVESHISKLRKK--LRNKLGFDPVDSKRFLGYSIDW 222 +G ++ + V++HI +LR K + + +D + + +GY + Sbjct: 183 WG-YEYFGDARTVDTHIKRLRAKTDITDTSAWD-IKTIWGVGYKFEV 227 >gi|119025684|ref|YP_909529.1| response regulator of two-component system [Bifidobacterium adolescentis ATCC 15703] gi|118765268|dbj|BAF39447.1| response regulator of two-component system [Bifidobacterium adolescentis ATCC 15703] Length = 240 Score = 137 bits (346), Expect = 8e-31, Method: Composition-based stats. Identities = 44/228 (19%), Positives = 87/228 (38%), Gaps = 16/228 (7%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + +G + + S+ R D+ ++ L LE Sbjct: 16 LVVEDEPTLATAIAQRITAEGWTARVASDGASAVQAASTLRPDLVIMDIML--PVMDGLE 73 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + I A VP++ ++ + +G DD + KP RE++AR A+ RR+ + Sbjct: 74 ATKRIVAERPVPVLILTARDDEADKVIGLGAGADDYMTKPFSMRELIARCKALLRRVDRA 133 Query: 123 NNRAETGPIR---------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 A+ + R V GE L E +L L + + ++ Sbjct: 134 KVIAKNSENEKLLDFGSLVIDPAQRIVTVNGEQVHLTPTEFDLLATLARKPKSVLTREKL 193 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ D + V+SH+ LR KL +K + + +GY+ + Sbjct: 194 LEEVWDWVDASG-TRTVDSHVKALRHKLGSKT----IRTVHGVGYAFE 236 >gi|312959066|ref|ZP_07773585.1| two component heavy metal response transcriptional regulator, winged helix family [Pseudomonas fluorescens WH6] gi|311286836|gb|EFQ65398.1| two component heavy metal response transcriptional regulator, winged helix family [Pseudomonas fluorescens WH6] Length = 225 Score = 137 bits (346), Expect = 8e-31, Method: Composition-based stats. Identities = 45/221 (20%), Positives = 87/221 (39%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D D + G +++ L V ++ L G Sbjct: 3 ILIVEDEEKTADYLHRGLTEQGYTVDVAREGVEGLHLALENDYAVIVLDVML--PGLDGF 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120 + R +RA Q P+I ++ ++ + G DD + KP E++AR+ A R Sbjct: 61 GVLRALRARKQTPVIMLTARERVEDRIRGLREGADDYLGKPFSFLELVARLQALTRRSGG 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + + R G L +E +L L +G+ ++KT I ++ + Sbjct: 121 HEPVQVTVADLWIDLISRKASRNGVRLDLTAKEFSLLSVLARRQGEILSKTAIAEMVWDI 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + NVVE I +LR KL + + R +GY ++ Sbjct: 181 -NFDSDANVVEVAIKRLRAKLDGPFEHKLLHTIRGMGYVLE 220 >gi|229815480|ref|ZP_04445812.1| hypothetical protein COLINT_02528 [Collinsella intestinalis DSM 13280] gi|229809013|gb|EEP44783.1| hypothetical protein COLINT_02528 [Collinsella intestinalis DSM 13280] Length = 229 Score = 137 bits (346), Expect = 8e-31, Method: Composition-based stats. Identities = 57/224 (25%), Positives = 96/224 (42%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQ----SSAREDVSAIEAFLIGKG 57 +L++D L+ D L G S++ ++ L S+ + ++ L Sbjct: 5 ILLVEDDPLIVDALTELLTSSGYSVDTADTQTRAIELATGAGSAGTYQLVLLDVTLR--E 62 Query: 58 EKVLELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 + ++ S P+I ++ T+ G DD V KP RE+LAR+AA Sbjct: 63 GNGFAVCAAVKETSPSTPVIFLTASDDEFNTVTGLTMGADDYVAKPFRPRELLARIAATI 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 RR + S G IR+ +D E +G L E R+L N GK V++ I A Sbjct: 123 RRSQPSRRIVSLGDIRIDTDRAYVERKGVELTLSALEYRLLLLFATNPGKLVSRDMIRDA 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219 ++ +EEN + +I +LR K+ + + + + R LGY Sbjct: 183 LWDSAGTYIEENTLSVYIKRLRDKIEDDPSRPELIQTVRGLGYK 226 >gi|158338636|ref|YP_001519813.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] gi|158308877|gb|ABW30494.1| two-component transcriptional regulator [Acaryochloris marina MBIC11017] Length = 225 Score = 137 bits (346), Expect = 8e-31, Method: Composition-based stats. Identities = 48/222 (21%), Positives = 98/222 (44%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + + D +++ + E L + D+ ++ L L Sbjct: 3 LLLVEDDERIAEALAEDLTDQHYAVDIAHDGEMGWELLEAFTYDLVLLDVML--PKMDGL 60 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 R +RA +P++ ++ + +D D+G DD V KP EI AR+ A+ RR Sbjct: 61 AFCRQMRAQGLDIPVLMLTARDTTANKVDGLDAGADDYVVKPCELEEISARIRALLRRGP 120 Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +++ ++ + + Q E+ L +E +LE + N+ + ++ QI ++ Sbjct: 121 MTSPPILEWEDLKLNPNTCEVFFQEEIIALTPKEYSLLELFLRNKRRVFSRAQILEHLW- 179 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220 ++ EE+ V++HI LR KL+ D + + GY + Sbjct: 180 AYEVLPEEDTVKAHIKGLRHKLKGAGAPNDLIQTVYGFGYRL 221 >gi|264680517|ref|YP_003280427.1| two component heavy metal response [Comamonas testosteroni CNB-2] gi|262211033|gb|ACY35131.1| two component heavy metal response [Comamonas testosteroni CNB-2] Length = 235 Score = 137 bits (346), Expect = 8e-31, Method: Composition-based stats. Identities = 45/225 (20%), Positives = 100/225 (44%), Gaps = 8/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + + G++G ++ ++ L + D+ ++ L G L Sbjct: 9 LLVIEDETKLAEYLQKGLGEEGFVVDAAHNGIDGLHLATEQPYDLIILDGML--PGIDGL 66 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + +R Q P++ ++ ++ + +G DD + KP E++AR+ A+ RR Sbjct: 67 AVLAALRQSRQTPVLMLTARAQVEDRVKGLQAGADDYLVKPFAFSELVARIHALLRRGLQ 126 Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + E +R+ G+ L +E +L L+ +G+ +++T++ S Sbjct: 127 AQATPEATVLRMADLELDLLRHRATRAGQRLDLTAKEFNLLSLLLRRQGEVLSRTELASQ 186 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ + + E NVVE + +LR KL + + R +GY ++ Sbjct: 187 VWDM-NFDSETNVVEVAVRRLRLKLDAPFELPLLHTVRGMGYVLE 230 >gi|241763956|ref|ZP_04761998.1| two component transcriptional regulator PhoB, winged helix family [Acidovorax delafieldii 2AN] gi|241366779|gb|EER61220.1| two component transcriptional regulator PhoB, winged helix family [Acidovorax delafieldii 2AN] Length = 235 Score = 137 bits (346), Expect = 8e-31, Method: Composition-based stats. Identities = 41/223 (18%), Positives = 90/223 (40%), Gaps = 10/223 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + + +G E + + DV ++ L G+ L Sbjct: 8 LIVEDEPAIAELIAVNLRHNGFQPIWSEDGESAQRELDAVLPDVILLDWML--PGQSGLM 65 Query: 63 LPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYR 117 L R RA +P++ ++ + D+G DD + KP +E+ R R Sbjct: 66 LARKWRADARTKPIPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIRAVLRRR 125 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + ++ G + + + QG+ + E ++L + M + + +++Q+ + Sbjct: 126 APEQVSDSVTIGELVLDAATYRVTFQGQPLKVGPTEFKLLHFFMKHSERVHSRSQLLDKV 185 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G +EE V+ H+ +LR+ L V++ R GY + Sbjct: 186 WGDH-VFIEERTVDVHVKRLREALGAAGA--MVETVRGAGYRL 225 >gi|158315649|ref|YP_001508157.1| two component transcriptional regulator [Frankia sp. EAN1pec] gi|158111054|gb|ABW13251.1| two component transcriptional regulator, winged helix family [Frankia sp. EAN1pec] Length = 235 Score = 137 bits (346), Expect = 8e-31, Method: Composition-based stats. Identities = 47/220 (21%), Positives = 89/220 (40%), Gaps = 5/220 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D D + G +++ + W D ++ L G E Sbjct: 4 LVVEDEERTADLLRRGLTEAGYAVDLVHDGTDAVWQAGEISYDAIVLDLML--PGLDGFE 61 Query: 63 LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R +R A P++ ++ + + D+G DD + KP E+ AR+ A+ RR V Sbjct: 62 VCRRLRAARRWSPILMLTARGDVDDRIHGLDAGADDYLAKPFSFGELTARLRALIRRGAV 121 Query: 122 SNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 R + GE L +E +LE LM G+ + ++ I ++ L Sbjct: 122 ERPATLRVGDIHLDPAARSVQRAGEPVDLSAKEFSLLELLMRRPGEVLTRSYILDHMWDL 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 NVV+ ++ LR+K+ G +++ R GY + Sbjct: 182 G-YDGTSNVVDQYVRYLRRKIDPADGLSRIETVRGAGYRL 220 >gi|29830024|ref|NP_824658.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29607134|dbj|BAC71193.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 225 Score = 137 bits (346), Expect = 8e-31, Method: Composition-based stats. Identities = 44/223 (19%), Positives = 86/223 (38%), Gaps = 6/223 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L +D A + + +G +E D+ ++ L G LE Sbjct: 5 LLAEDDASISEPLARALRREGYEVEVREDGPTALDAGMQGGVDLVVLDLGL--PGMDGLE 62 Query: 63 LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-HREILARVAAIYRRLK 120 + R +RA +P++ ++ T+ D+G DD V KP + A + R Sbjct: 63 VARRLRAEGHTIPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAA 122 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 T +R+ + + E L +E +L L+ + G+ V + Q+ ++ Sbjct: 123 EPQQPPATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 182 Query: 181 FDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222 + ++ HIS LRKKL + + + R +G+ + Sbjct: 183 TWWS-STKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEK 224 >gi|83648723|ref|YP_437158.1| response regulator [Hahella chejuensis KCTC 2396] gi|83636766|gb|ABC32733.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Hahella chejuensis KCTC 2396] Length = 242 Score = 137 bits (346), Expect = 8e-31, Method: Composition-based stats. Identities = 31/228 (13%), Positives = 78/228 (34%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 V++DD ++ +G + E L D+ ++ L G+ Sbjct: 8 IVVVDDDLEIRQLLSQYLSKNGFDVSPAEDGETLFKLLEGVTPDLIILDIML--PGDDGF 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI--------HHREILARVA 113 + + +R S VP+I ++ + + G DD + KP + Sbjct: 66 TICQRLRKSSTVPIIMLTANADDTDRIVGLEMGADDYIAKPFNPRELLARMKAILRRVQP 125 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + + G+ + + +L + + +++ +I Sbjct: 126 KQSAPSGQPKIYRFGNLVLDTTSRMLVQPNGDKSAISGADYTLLCLFLEKGNEVLSRDEI 185 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 ++G ++ ++ H+S+LR++L + + + R GY + Sbjct: 186 SDVLHGRECSPLD-RSIDVHMSRLRQRLGDDAKNPTLIKTVRGSGYVL 232 >gi|70731644|ref|YP_261385.1| KDP operon transcriptional regulatory protein KdpE [Pseudomonas fluorescens Pf-5] gi|68345943|gb|AAY93549.1| KDP operon transcriptional regulatory protein KdpE [Pseudomonas fluorescens Pf-5] Length = 231 Score = 137 bits (346), Expect = 8e-31, Method: Composition-based stats. Identities = 45/223 (20%), Positives = 91/223 (40%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD ++ G + + + + D+ ++ L Sbjct: 7 ILVIDDEPQIRKFLRISLASQGYKVIEAGTGTEGLAQAALNKPDLLVLDLGL--PDMDGQ 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R R S VP++ +S S ++ D G +D V KP +E LAR+ A+ R+ Sbjct: 65 QVLREFREWSAVPVLVLSVRASELQKVEALDGGANDYVTKPFGIQEFLARIRALLRQAPS 124 Query: 122 SNNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + GP+ V R + G L R+E +L L + G+ + + Q+ I+ Sbjct: 125 GEVQEAALQVGPLTVDLAYRRVLLDGVEVALTRKEYAVLAQLARHPGRVITQQQLLKDIW 184 Query: 179 GLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220 G + + + + LR+KL + + ++ +GY + Sbjct: 185 GPTHTE-DSHYLRIVVGHLRQKLADDPTRPRFIVTEAGVGYRL 226 >gi|71907609|ref|YP_285196.1| osmolarity response regulator [Dechloromonas aromatica RCB] gi|71847230|gb|AAZ46726.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Dechloromonas aromatica RCB] Length = 243 Score = 137 bits (346), Expect = 8e-31, Method: Composition-based stats. Identities = 38/229 (16%), Positives = 89/229 (38%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++D + G+ G ++ + + L+S + ++ GE L Sbjct: 10 ILVVDDDARLRDLLVRYLGEQGFEVKAAADGQQMDKLRSREHYHLIVLDLM--MPGEDGL 67 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH--------HREILARV 112 + R +R Q P+I ++ + + G DD + KP + H + + Sbjct: 68 TICRRLRGQGDQTPIIMLTAKGDEVDRIVGLEMGADDYLPKPFNPRELLARIHAVLRRQG 127 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + I V R + E+ L E +L+ L+ + + +++ + Sbjct: 128 SKPPGAPEDEPETITFSNIEVDLAARTLKRGEELQALTTGEFAVLKVLLQHPRQPLSRDK 187 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + S G ++ + ++ +S+LRK + + + + GY Sbjct: 188 LMSLARGR-EQGPFDRAIDVQVSRLRKLIETDPAQPRYLQTVWGFGYVF 235 >gi|296329901|ref|ZP_06872385.1| YxdJ [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305676627|ref|YP_003868299.1| two-component response regulator [Bacillus subtilis subsp. spizizenii str. W23] gi|296152940|gb|EFG93805.1| YxdJ [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305414871|gb|ADM39990.1| two-component response regulator (paired with YxdK) [Bacillus subtilis subsp. spizizenii str. W23] Length = 229 Score = 137 bits (346), Expect = 8e-31, Method: Composition-based stats. Identities = 44/225 (19%), Positives = 87/225 (38%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++ G + + DV ++ L Sbjct: 4 IMIVEDSEDIRGLLQNYLEKYGYQTVVAADFTAVLDVFLREKPDVVLLDINL--PSYDGY 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115 R IR HS P+I IS + ++G DD + KP + + R A Sbjct: 62 YWCRQIRQHSTSPIIFISARSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYG 121 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 +K E +++ + + Q E L ++E ++LE L+ K + ++ Sbjct: 122 EYAVKQGERIVEFEGAQLYVERFELRYQEEKCELSKKESKLLEVLLERGEKVTGRDRLME 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + D +++N + +I++LRKKLR+ ++S R GY + Sbjct: 182 KTWDT-DLFIDDNTLNVYITRLRKKLRDLGVPFSIESVRGEGYQL 225 >gi|169794308|ref|YP_001712101.1| positive response regulator for the pho regulon, autophosphorylates and phosphorylates sensor PhoR [Acinetobacter baumannii AYE] gi|184159890|ref|YP_001848229.1| response regulator [Acinetobacter baumannii ACICU] gi|213159117|ref|YP_002321115.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter baumannii AB0057] gi|215481865|ref|YP_002324047.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter baumannii AB307-0294] gi|239502828|ref|ZP_04662138.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter baumannii AB900] gi|260553330|ref|ZP_05825944.1| response regulator [Acinetobacter sp. RUH2624] gi|260557862|ref|ZP_05830075.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter baumannii ATCC 19606] gi|293610528|ref|ZP_06692828.1| two component transcriptional regulator [Acinetobacter sp. SH024] gi|299768353|ref|YP_003730379.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter sp. DR1] gi|301345738|ref|ZP_07226479.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter baumannii AB056] gi|301511640|ref|ZP_07236877.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter baumannii AB058] gi|301596188|ref|ZP_07241196.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter baumannii AB059] gi|332850113|ref|ZP_08432500.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter baumannii 6013150] gi|332871439|ref|ZP_08439956.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter baumannii 6013113] gi|332873325|ref|ZP_08441279.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter baumannii 6014059] gi|169147235|emb|CAM85094.1| positive response regulator for the pho regulon, autophosphorylates and phosphorylates sensor PhoR [Acinetobacter baumannii AYE] gi|183211484|gb|ACC58882.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Acinetobacter baumannii ACICU] gi|213058277|gb|ACJ43179.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter baumannii AB0057] gi|213987672|gb|ACJ57971.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter baumannii AB307-0294] gi|260405167|gb|EEW98665.1| response regulator [Acinetobacter sp. RUH2624] gi|260408653|gb|EEX01958.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter baumannii ATCC 19606] gi|292826872|gb|EFF85237.1| two component transcriptional regulator [Acinetobacter sp. SH024] gi|298698441|gb|ADI89006.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter sp. DR1] gi|322509805|gb|ADX05259.1| phoB [Acinetobacter baumannii 1656-2] gi|323519817|gb|ADX94198.1| response regulator [Acinetobacter baumannii TCDC-AB0715] gi|325123908|gb|ADY83431.1| positive response regulator for the pho regulon,autophosphorylates and phosphorylates sensor PhoR [Acinetobacter calcoaceticus PHEA-2] gi|332730962|gb|EGJ62268.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter baumannii 6013150] gi|332731476|gb|EGJ62766.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter baumannii 6013113] gi|332738388|gb|EGJ69261.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter baumannii 6014059] Length = 236 Score = 137 bits (346), Expect = 8e-31, Method: Composition-based stats. Identities = 40/224 (17%), Positives = 87/224 (38%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ G + + R + ++ L G G + Sbjct: 6 ILIVDDELPIREMIHTSLDMAGFQCLQAEDAKQAHQIIVDQRPALILLDWMLPG-GVSGV 64 Query: 62 ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 +L R ++ +P+I ++ + D+G DD + KP RE+++R+ A+ RR Sbjct: 65 DLCRRLKRDENLAEIPVIMLTARGEEDHKVQGLDAGADDYMTKPFSTRELVSRIKAVLRR 124 Query: 119 LKVSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + + + + E R+L + M + + + Q+ Sbjct: 125 ANALSGEKTIDANGLILDPVSQRVSFGNSILDMGPTEYRLLAFFMTHPERAYTRAQLLDQ 184 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + +E+ ++ HI +LRK L V + R GY Sbjct: 185 VWG-GNVYIEDRTIDVHIRRLRKVLEPFGVDRFVQTVRGTGYRF 227 >gi|161522391|ref|YP_001585320.1| two component transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|221198526|ref|ZP_03571571.1| transcriptional regulatory protein ResD [Burkholderia multivorans CGD2M] gi|221207755|ref|ZP_03580762.1| transcriptional regulatory protein ResD [Burkholderia multivorans CGD2] gi|160345944|gb|ABX19028.1| two component transcriptional regulator, winged helix family [Burkholderia multivorans ATCC 17616] gi|221172252|gb|EEE04692.1| transcriptional regulatory protein ResD [Burkholderia multivorans CGD2] gi|221180977|gb|EEE13379.1| transcriptional regulatory protein ResD [Burkholderia multivorans CGD2M] Length = 272 Score = 137 bits (346), Expect = 8e-31, Method: Composition-based stats. Identities = 49/228 (21%), Positives = 89/228 (39%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A + D D+ + L D ++ L G L Sbjct: 40 ILIVEDDADIADVLSLHLRDERYEVVHSADGAQGLRLLEQGGWDALILDLML--PGVDGL 97 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R RA P+I S S + + G DD + KP E++ARV A+ RR+ Sbjct: 98 EICRRARAMARYTPIIITSARSSEVHRILGLEIGADDYLAKPFSVLELVARVKALLRRVD 157 Query: 121 VSNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + R+ V G L RE +L + + GK ++ + Sbjct: 158 ALARDSRIDAGTLDVAGLSIDPIAREASVDGTRIDLTPREFDLLYFFARHPGKVFSRMDL 217 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 +A++G + E+ V +HI++LR K+ + + + GY + Sbjct: 218 LNAVWG-YQHEGYEHTVNTHINRLRAKIEADPAEPVRILTVWGRGYKL 264 >gi|325126518|gb|ADY85848.1| Two-component response regulator [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 228 Score = 137 bits (346), Expect = 9e-31, Method: Composition-based stats. Identities = 40/227 (17%), Positives = 91/227 (40%), Gaps = 9/227 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + ++G + + S+ D++ + ++ + Sbjct: 3 ILVVDDDHEIVELLSIYLKNEGYEPIAAYNGKEALTRLSTT-PDIALMILDVMMPNMSGI 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------AI 115 ++ + +R S +P+I +S + +G DD V+KP + E++ARV Sbjct: 62 DVVKEVRKDSDIPIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRRSQK 121 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + + I V+G+ L E IL L ++ + + +IF Sbjct: 122 QVKGEEPDVLEVGPLIINKDSHEVKTVEGKEIQLTALEFGILYLLASHPNRVFSADEIFE 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221 ++ + V V H+S LR K+ + G + + + +GY ++ Sbjct: 182 RVW-QQESIVSAKTVMVHVSHLRDKIHKATDGEEVIKTVWGVGYKVE 227 >gi|292486824|ref|YP_003529694.1| putative transcriptional regulator Ycf27 [Erwinia amylovora CFBP1430] gi|291552241|emb|CBA19278.1| probable transcriptional regulator ycf27 [Erwinia amylovora CFBP1430] gi|312170892|emb|CBX79151.1| probable transcriptional regulator ycf27 [Erwinia amylovora ATCC BAA-2158] Length = 251 Score = 137 bits (346), Expect = 9e-31, Method: Composition-based stats. Identities = 46/223 (20%), Positives = 94/223 (42%), Gaps = 9/223 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D L++ G +G +++ + S + + ++ L Sbjct: 35 ILIVEDDTLLQQGLNLALTGEGYAVDCAANAAQGTAFLQSGQYSLVVLDLGL--PDRDGA 92 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +L R R +P++ +S +L +D D+G DD + KP E+ ARV A+ RR + Sbjct: 93 DLLRQWRKEQQDLPVLILSARDALSDRVDGLDAGADDYLMKPFALAELKARVRALIRRYQ 152 Query: 121 VSNNRAETGPIRVFS-DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++ + + V + + +E +L L+ G+ V + + +Y Sbjct: 153 GQSDNLLQHGDITLNLSSQQVAVDLQPVDVTPKEFSLLTRLLMRIGQTVHRETLQQDLYS 212 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 D N +E H+ LR+KL G D + + R +GY ++ Sbjct: 213 WQD-DTSSNTLEVHMHNLRRKL----GKDRIKTVRGVGYRLEE 250 >gi|300776691|ref|ZP_07086549.1| response regulator [Chryseobacterium gleum ATCC 35910] gi|300502201|gb|EFK33341.1| response regulator [Chryseobacterium gleum ATCC 35910] Length = 224 Score = 137 bits (346), Expect = 9e-31, Method: Composition-based stats. Identities = 41/223 (18%), Positives = 90/223 (40%), Gaps = 9/223 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +LIDD + + +G + + D+ ++ + G + Sbjct: 5 ILLIDDELDILEILSYNLEKEGYDIYTATNGNEGIEKAKEIVPDLILLDVMMPEKDGIET 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVN---KPIHHREILARVAAIYR 117 + R ++ + ++ +S + L F +G +D + KP + + + Sbjct: 65 CQELRKVKELQKTLIVFLSARSEEFSQLAGFQAGANDYIVKLIKPKILISKVNALLQLTS 124 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 ++ + E G + + D G+ F LP++E +L L +N K + +I + Sbjct: 125 QVSDNAKLIEIGDLVIDKDNFRVSKSGQQFLLPKKEFDLLYLLASNTEKVFKREEILEKV 184 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G D V E ++ HI +LR+KL G + + + + +GY + Sbjct: 185 WGN-DVIVGERTIDVHIRRLREKL----GINTIQTLKGIGYKL 222 >gi|182679189|ref|YP_001833335.1| two component transcriptional regulator [Beijerinckia indica subsp. indica ATCC 9039] gi|182635072|gb|ACB95846.1| two component transcriptional regulator, winged helix family [Beijerinckia indica subsp. indica ATCC 9039] Length = 235 Score = 137 bits (346), Expect = 9e-31, Method: Composition-based stats. Identities = 53/220 (24%), Positives = 102/220 (46%), Gaps = 9/220 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + A G +++ E +L + D ++ L + L Sbjct: 3 ILVVEDDKDLNRQLTAALSQAGYAVDHAFDGEEGWFLGDTEPYDAVVLDLGL--PKKDGL 60 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + + R A +P++ ++ ++ D+G DD V KP H E+LAR+ A+ RR Sbjct: 61 SVLKEWRKAERSMPVLILTARDRWSDKVEGIDAGADDYVAKPFHMEEVLARLRALLRRSA 120 Query: 121 VSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + GP+++ + V+ L E R+L Y+M + G+ +++++I +Y Sbjct: 121 GRASDELVCGPVKLDTRSGAVTVEDVPVKLTSHEYRLLAYMMLHAGRVISRSEIIEHLYD 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 D + N +E + +LRKKL GFD +++ R LGY Sbjct: 181 Q-DFDRDSNTIEVFVGRLRKKL----GFDIIETLRGLGYR 215 >gi|167839646|ref|ZP_02466330.1| DNA-binding response regulator IrlR [Burkholderia thailandensis MSMB43] Length = 229 Score = 137 bits (346), Expect = 9e-31, Method: Composition-based stats. Identities = 41/222 (18%), Positives = 87/222 (39%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + G + + D+ ++ L G Sbjct: 3 ILIVEDEPKTGMYLRKGLTEAGFVADWVEDGVTGLHQAETEEYDLIILDVML--PGHDGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120 + +R P++ ++ + + + G DD V KP E++ARV +I R Sbjct: 61 TVLERLRRERSTPVLFLTASDDVGDRVKGLELGADDYVVKPFDFVELVARVRSILRRGQA 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + + R QG+V L +E +L LM G+ + + I S ++ + Sbjct: 121 RESTVLRIADLELDLTRRKATRQGDVVLLTAKEFALLWLLMRREGEILPRATIASQVWDM 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + + NVV++ I +LR K+ + + + R +GY ++ Sbjct: 181 -NFNSDTNVVDAAIRRLRAKIDDAYEPKLIHTVRGMGYVLEV 221 >gi|163854400|ref|YP_001628698.1| two-component response regulator [Bordetella petrii DSM 12804] gi|163258128|emb|CAP40427.1| two-component response regulator [Bordetella petrii] Length = 220 Score = 137 bits (346), Expect = 9e-31, Method: Composition-based stats. Identities = 54/223 (24%), Positives = 96/223 (43%), Gaps = 9/223 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +LI+D + G +++ + +L D ++ L L Sbjct: 4 LLIEDEPTLAAQLEQALRAAGYTVDRAADGQTAHYLGDVEAFDAVVLDLGL--PVLDGLT 61 Query: 63 LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120 + R R A +P++ ++ S + D+G DD + KP H E+LARV A I R Sbjct: 62 VLRRWRAAGRNMPVLILTARDSWHEKVAGIDAGADDYLAKPFHMEELLARVRALIRRNSV 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 ++ GP+ + + + G L E ++L LM + G+ V++ Q+ +Y Sbjct: 122 HASAEWRCGPLMLDTRQARVTLDGAPITLTSHEFKVLAMLMQHAGEVVSRQQLVEHLY-A 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 D + N ++ I +LRKKL D +++ R LGY + N Sbjct: 181 QDFDRDSNTIDVFIGRLRKKL----PPDTIETVRGLGYRLAGN 219 >gi|170729101|ref|YP_001763127.1| two component transcriptional regulator [Shewanella woodyi ATCC 51908] gi|169814448|gb|ACA89032.1| two component transcriptional regulator, winged helix family [Shewanella woodyi ATCC 51908] Length = 225 Score = 137 bits (346), Expect = 9e-31, Method: Composition-based stats. Identities = 49/222 (22%), Positives = 100/222 (45%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D A + + F + G ++E + L +S + D+ ++ L L Sbjct: 3 ILLVEDDATTIEYVVKGFTEQGHNIETASDGHQGLLLATSMKYDLILLDRML--PQLDGL 60 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +L +RA SQ P++ +S + + +G DD + KP E+L R + +R Sbjct: 61 KLLAALRATGSQTPVLILSALSHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMQRGL 120 Query: 121 VSNNRAETGPIRVFSD--GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + R + G L +E ++L+YLM + + +++T +F A++ Sbjct: 121 SQPAETGLTVGNLVMELLTRKVTLDGNELMLQPKEFQLLKYLMEHPNQVISRTLLFEAVW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + NV++ HI+KLR+K + +++ R GY + Sbjct: 181 D-YHFDPRTNVIDVHIAKLRRKFEELGFGELIETVRGAGYRL 221 >gi|110597968|ref|ZP_01386249.1| Response regulator receiver:Transcriptional regulatory protein-like [Chlorobium ferrooxidans DSM 13031] gi|110340417|gb|EAT58906.1| Response regulator receiver:Transcriptional regulatory protein-like [Chlorobium ferrooxidans DSM 13031] Length = 231 Score = 137 bits (346), Expect = 9e-31, Method: Composition-based stats. Identities = 43/228 (18%), Positives = 93/228 (40%), Gaps = 12/228 (5%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + ++++D + G + + S E S D+ ++ L G Sbjct: 5 LLLVVEDDRNLSKLLEFNLERAGYACKISESGENAFEQLSRKCFDLILLDIML--PGMNG 62 Query: 61 LELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 EL + I+ H P+I ++ + F+ G+DD V KP RE+ R+ A+ + Sbjct: 63 FELCQKIKQHQIYKDIPIIMLTAKGEEIDRILGFELGIDDYVVKPFSPRELNLRIRAVLK 122 Query: 118 RLKVSNNRAETGPI----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 R + + + + + L E ++L L+ +G+ ++ + Sbjct: 123 RDRRKSAKMQEILNGDGIVIDLSRHRVTSDQRELELTLMEFKLLVALLKRKGEAQSRETL 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 S ++ + D + +++HI++LR+KL K + + R +GY + Sbjct: 183 LSDVWDV-DRNINTRTIDTHITRLREKLGEKGN--LIKTLRGIGYKFE 227 >gi|325954800|ref|YP_004238460.1| two component transcriptional regulator, winged helix family [Weeksella virosa DSM 16922] gi|323437418|gb|ADX67882.1| two component transcriptional regulator, winged helix family [Weeksella virosa DSM 16922] Length = 225 Score = 137 bits (346), Expect = 9e-31, Method: Composition-based stats. Identities = 38/224 (16%), Positives = 92/224 (41%), Gaps = 9/224 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 +L+DD + + +G +E + + + ++ + G + Sbjct: 6 ILLVDDEPDILEFVTYNLEKEGFEVETATNGLEGIKKAKVFKPHLILMDVMMPQMDGVEA 65 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117 R + A ++ +S + L +D+G +D + KPI + +++++ I + Sbjct: 66 CGELRKLDAFKDTLIVFLSARGEDFSQLAAYDAGANDYIVKPIKPKILVSKLKALLKIKQ 125 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + + + + +GE F LPR+E ++ L +N + + +I + Sbjct: 126 QDEEVADIIRLKDFTINRETYKVTFKGEDFTLPRKEFELIALLGSNPERVFKREEILDKV 185 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +G + V ++ H+ KLR+K G D + + +GY ++ Sbjct: 186 WGN-EVVVGGRTIDVHVRKLREK----FGNDRFSTIKGIGYKMN 224 >gi|295705037|ref|YP_003598112.1| two-component response regulator PhoP [Bacillus megaterium DSM 319] gi|294802696|gb|ADF39762.1| two-component response regulator PhoP [Bacillus megaterium DSM 319] Length = 230 Score = 137 bits (346), Expect = 9e-31, Method: Composition-based stats. Identities = 42/223 (18%), Positives = 85/223 (38%), Gaps = 9/223 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + F +G +E + E S + DV ++ Sbjct: 5 ILVVDDEKSIATAVSYAFKREGYIVETASDGEEALEKVKSFQPDVMILDVM--MPKLTGY 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116 E+ R + + +I ++ + + + G DD + KP RE++AR Sbjct: 63 EVCRKLENRRGMGIILLTVKNDIVDKVLGLELGADDYMTKPFDVRELVARAKALVRRMEK 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + G ++V R V E+ L +E ++ L+AN + + + Sbjct: 123 NEAPEAVGEITVGKVKVNLIQRTLHVANELVKLTPKEFDLIALLLANLERVYTREDLLDL 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 ++G+ D A V+ H+ +LRKK+ + + +GY Sbjct: 183 VWGM-DYAGGTRTVDIHMQRLRKKVGEA-EPYLLQTVYGVGYK 223 >gi|167562371|ref|ZP_02355287.1| two component transcriptional regulator, winged helix family protein [Burkholderia oklahomensis EO147] gi|167574332|ref|ZP_02367206.1| two component transcriptional regulator, winged helix family protein [Burkholderia oklahomensis C6786] Length = 233 Score = 137 bits (346), Expect = 9e-31, Method: Composition-based stats. Identities = 46/226 (20%), Positives = 82/226 (36%), Gaps = 8/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++I+D + + G + E + L S D+ ++ L G G Sbjct: 5 ILVIEDEPAISELISVNLQHAGHCPIRAYNAEQAQSLISDVLPDLVLLDWMLPGKSGIAF 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILA------RVAA 114 R +P+I ++ Q + + G DD V KP +E++A R A Sbjct: 65 ARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRRRA 124 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 V + E L E R+L + M + + ++TQ+ Sbjct: 125 PQLTEDVVSINGLRLDPATHRVAAHAEGSEIKLDLGPTEFRLLHFFMTHPERVHSRTQLL 184 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G VEE V+ HI +LR L+ +++ R GY + Sbjct: 185 DQVWGDH-VFVEERTVDVHIKRLRAALKPAGCDAMIETVRGSGYRL 229 >gi|330504167|ref|YP_004381036.1| two component transcriptional regulator [Pseudomonas mendocina NK-01] gi|328918453|gb|AEB59284.1| two component transcriptional regulator [Pseudomonas mendocina NK-01] Length = 225 Score = 137 bits (346), Expect = 9e-31, Method: Composition-based stats. Identities = 55/223 (24%), Positives = 105/223 (47%), Gaps = 5/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D AL++ A ++G ++ + E + S D++ ++ L G + Sbjct: 3 LLVVEDEALLRHHLFARLSENGHVVDAVRTAEEALYRAESFNHDLALVDLGL--PGMSGI 60 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119 +L R +R P++ ++ + Q ++ G DD V KP E+ AR+ A+ R Sbjct: 61 DLIRQLRSQDKSFPILILTARGNWQDKVEGLSCGADDYVVKPFQFEELEARLNALLRRSS 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + E G + + + V + L E RILEYLM + + VAK ++ +Y Sbjct: 121 GFTKSTIEAGSLVLDLHRKQATVDEQSLQLTAYEYRILEYLMLHHQQVVAKERLMEQLY- 179 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 D+ + NV+E + +LR+KL LG +++ R GY + Sbjct: 180 PGDDDRDPNVIEVLVGRLRRKLEAVLGGKSIETVRGQGYMFNE 222 >gi|300785437|ref|YP_003765728.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299794951|gb|ADJ45326.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 229 Score = 137 bits (346), Expect = 9e-31, Method: Composition-based stats. Identities = 51/223 (22%), Positives = 91/223 (40%), Gaps = 8/223 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++ +D + + S+ + + D+ ++ G LE Sbjct: 6 LVAEDDVKQAELLRRYLRREAHSVLVVHDGREAVDQAALRHPDLLVLDVM--MPGLDGLE 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +R S VP++ ++ + + L FD G DD V KP RE++ARV ++ RR S Sbjct: 64 VVRALRRESDVPVLLVTARSTAEDKLAGFDLGADDYVTKPYDPRELMARVRSLLRRAGPS 123 Query: 123 NNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 +R V E RILE LMA G+ +++ Q+ + + Sbjct: 124 GSRPVLPLRVGALLLDQIRHTVRVHDRPIDCTPAEFRILEALMAEPGRVLSRRQLLNQAH 183 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 G D V E ++H+ LR+K+ + + + +GY I Sbjct: 184 GQ-DTFVTERTADAHLKNLRRKIEADPRRPEYLHTVYGVGYKI 225 >gi|288918083|ref|ZP_06412440.1| two component transcriptional regulator, winged helix family [Frankia sp. EUN1f] gi|288350465|gb|EFC84685.1| two component transcriptional regulator, winged helix family [Frankia sp. EUN1f] Length = 267 Score = 137 bits (346), Expect = 9e-31, Method: Composition-based stats. Identities = 48/224 (21%), Positives = 97/224 (43%), Gaps = 9/224 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + +G ++ + R D ++ L L Sbjct: 44 ILVVDDESTLSELLSMALRYEGWEVQTAPDGRGALKVARDFRPDAVVLDIML--PDMDGL 101 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +RA S P++ ++ +++ + +G DD V KP E++AR+ + RRL Sbjct: 102 EVLRKLRAESPDVPVLFLTARDAVEDRVAGLTAGGDDYVTKPFSLEELVARLRGLLRRLH 161 Query: 121 VSNNRAETG----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 S + + + R+ G+ L E +L + M N + ++K QI Sbjct: 162 RSTLSDGATLVVGDLIMNEESREVSRAGQEVRLTATEFELLRFFMRNPRRVLSKAQILDR 221 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +D + NVVE ++S LR+K+ + + + R GY + Sbjct: 222 VW-NYDFGGQANVVELYVSYLRRKI-DVGRQPMIHTMRGAGYVL 263 >gi|170077923|ref|YP_001734561.1| two-component response regulator [Synechococcus sp. PCC 7002] gi|169885592|gb|ACA99305.1| two-component response regulator [Synechococcus sp. PCC 7002] Length = 249 Score = 137 bits (346), Expect = 9e-31, Method: Composition-based stats. Identities = 42/230 (18%), Positives = 89/230 (38%), Gaps = 13/230 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD + + G + + L + D+ ++ L Sbjct: 4 ILIIDDDPAIAELVAINLEMAGYDVSRAEDGIKGQALAVQLQPDLVMLDLML--PKVDGF 61 Query: 62 ELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 + + IR + +P++ ++ Q +D F++G DD + KP E+L RV A+ RR Sbjct: 62 TVCQRIRREERTADIPILMLTALGQTQDKVDGFNAGADDYLTKPFEVEEMLVRVRALLRR 121 Query: 119 LKVSNNRAETGPIRVF------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 A+ I + + + + L E +L L+ G+ ++ ++ Sbjct: 122 SDRIPQAAKHTEILNYGPLTLIPERFEAIWFDQTIKLTHLEFELLHCLLQRHGQTISPSE 181 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 I ++G +D + + + H+ LR KL + + GY ++ Sbjct: 182 ILKEVWG-YDPSDDIETIRVHVRHLRTKLEPEPRRPQYIKTVYGAGYCLE 230 >gi|89069932|ref|ZP_01157265.1| DNA-binding response regulator PetR [Oceanicola granulosus HTCC2516] gi|89044486|gb|EAR50614.1| DNA-binding response regulator PetR [Oceanicola granulosus HTCC2516] Length = 231 Score = 137 bits (346), Expect = 9e-31, Method: Composition-based stats. Identities = 42/226 (18%), Positives = 88/226 (38%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ +G + L D+ ++ GE + Sbjct: 6 ILIVDDDERIRGLLQKFLLRNGFLVSVARDGAHARRLLDGLEFDLIVLDVM--MPGEDGV 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R +R + P++ ++ + ++G DD + KP +E+L R+ AI RR+ Sbjct: 64 SLCRDLRGRLKTPILLLTAKGETTDRIAGLEAGADDYLAKPFEPKELLLRINAILRRVPA 123 Query: 122 SNNRAETG------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + T P R + + E+ L E ++ A G+ +++ + Sbjct: 124 AEPAPVTPKVLLLGPCRYDIERGEMWCGEELVRLTATENHLMRIFSARPGEALSRNMLVE 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + G +E V+ I++LR+KL + + + R GY + Sbjct: 184 EL-GRAGGQAQERAVDVQITRLRRKLEADPKQPRYLQTVRGAGYML 228 >gi|328471931|gb|EGF42808.1| putative two component response regulator transcription regulator protein [Vibrio parahaemolyticus 10329] Length = 230 Score = 137 bits (346), Expect = 9e-31, Method: Composition-based stats. Identities = 37/227 (16%), Positives = 89/227 (39%), Gaps = 9/227 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G ++ + + +S D+ ++ L Sbjct: 3 ILIVEDEHKAGEYLQKGLIESGYVVDLVHDGIDGLYHATSEEYDLILLDIML--PKLDGW 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAI 115 ++ +R+ P+I ++ ++ + F+ G +D V KP R I Sbjct: 61 QVLNTLRSSGIHTPVIMLTAKEQVEDRVRGFELGANDYVVKPYAFAELLARVQNVFRHHI 120 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 ++ S + + R G+ L +E +LE LM G+ +++T I S Sbjct: 121 AAQVVASPQTLRVADLELDMIKRVASRAGQSMSLTAKEYALLELLMRKTGQVLSRTTIAS 180 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 ++ + + + NV++ + +LR K+ + + R +GY ++ Sbjct: 181 LVWDM-NFDSDTNVIDVAVKRLRSKVDKPFDKPLIHTVRGMGYKLEE 226 >gi|325684936|gb|EGD27080.1| response regulator [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 228 Score = 137 bits (346), Expect = 9e-31, Method: Composition-based stats. Identities = 40/227 (17%), Positives = 91/227 (40%), Gaps = 9/227 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + ++G + + S+ D++ + ++ + Sbjct: 3 ILVVDDDHEIVELLSIYLKNEGYEPIAAYNGKEALTKLSTT-PDIALMILDVMMPNLSGI 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------AI 115 ++ + +R S +P+I +S + +G DD V+KP + E++ARV Sbjct: 62 DVVKEVRKDSDIPIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRRSQK 121 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + + I V+G+ L E IL L ++ + + +IF Sbjct: 122 QVKEEEPDVLEVGPLIINKDSHEVKTVEGKEIQLTALEFGILYLLASHPNRVFSADEIFE 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 ++ + V V H+S LR K++ G + + + +GY ++ Sbjct: 182 RVW-QQESIVSAKTVMVHVSHLRDKIQKATDGEEVIKTVWGVGYKVE 227 >gi|297565290|ref|YP_003684262.1| winged helix family two component transcriptional regulator [Meiothermus silvanus DSM 9946] gi|296849739|gb|ADH62754.1| two component transcriptional regulator, winged helix family [Meiothermus silvanus DSM 9946] Length = 223 Score = 137 bits (346), Expect = 9e-31, Method: Composition-based stats. Identities = 40/221 (18%), Positives = 88/221 (39%), Gaps = 6/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++++D V+ G G + + A D+ ++ L G ++ Sbjct: 5 LLVVEDEPAVRMGLRLSLSRAGHQVLEAATATEAWEQLPQA--DLVVLDWMLPDEPGVRL 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE R + +P++ ++ ++ G DD + KP E+ R Sbjct: 63 LERLRRDGRYENLPVLMLTARAGEGDRVEGLTRGADDYLTKPFSTPEL-LARIQALLRRS 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + R E G + + + + G L RRE +L +L + G+ ++ ++ ++G Sbjct: 122 GKSGRIERGGLALDLERHQASLDGRPLDLTRREFDLLAFLARHPGRVYSREELLERVWG- 180 Query: 181 FDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220 + V+ H+++LR+KL + +++ R +GY Sbjct: 181 PEFMGTARTVDQHVAQLREKLQEDPKLPRFLETLRGVGYRF 221 >gi|226304543|ref|YP_002764501.1| OmpR family two-component response regulator [Rhodococcus erythropolis PR4] gi|226183658|dbj|BAH31762.1| putative OmpR family two-component response regulator [Rhodococcus erythropolis PR4] Length = 237 Score = 137 bits (346), Expect = 9e-31, Method: Composition-based stats. Identities = 40/223 (17%), Positives = 85/223 (38%), Gaps = 8/223 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + +G ++ + + ++ L G +E Sbjct: 15 LVVDDETALAKVVANYLTREGFTVRLAHDGPSAVRSVREFEPALIVLDLML--PGFDGME 72 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYRR 118 + R IR S ++ +S + +G DD V KP RE++ARV Sbjct: 73 VCRRIRTFSDAYILMLSARGEESDKVTGLAAGADDYVVKPFGPRELVARVKALLRRPRAS 132 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + + R V + L E +L L + ++ +I ++++ Sbjct: 133 SLLPKVLPTPPGLDIDVLARTVRVDDNLVDLTPTEFTLLSALASRPDAAWSRAEIIASVW 192 Query: 179 GLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220 G ++++V+ H+ LR+KL + + + R +GYS+ Sbjct: 193 GSS-WFGDQHIVDVHVRGLRRKLGDDATDPRFIRTVRGVGYSL 234 >gi|190572650|ref|YP_001970495.1| putative two-component response regulator transcriptional regulator [Stenotrophomonas maltophilia K279a] gi|190010572|emb|CAQ44181.1| putative two-component response regulator transcriptional regulatory protein [Stenotrophomonas maltophilia K279a] Length = 239 Score = 137 bits (346), Expect = 9e-31, Method: Composition-based stats. Identities = 48/228 (21%), Positives = 94/228 (41%), Gaps = 13/228 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARE-DVSAIEAFLIGKGEKVL 61 ++++D A + D GD+G + S + L D ++ L G L Sbjct: 7 LIVEDDAHIADLLRMHLGDEGYDVAHAASGDAGLRLLEQEGPWDALVLDVML--PGVDGL 64 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVA 113 ++ + RA VP+I IS S + + G DD + KP E++ R Sbjct: 65 QVCQRARAMARYVPIIIISARGSETQRIVGLELGADDYLAKPFSMPELVARVRALLRRAE 124 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 A+ + ++ E G +++ R V G L RE +L + + + A+ ++ Sbjct: 125 AMAQSARIDAGAIELGGLQLDPVARTASVDGNALELTPREFDLLLFFARHPDQVFARMEL 184 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + ++G + E+ V +HI++LR K+ + + + GY + Sbjct: 185 LNQVWG-YQHDGYEHTVNTHINRLRSKIEPDPANPRRLLTVWGRGYKL 231 >gi|219850126|ref|YP_002464559.1| winged helix family two component transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219544385|gb|ACL26123.1| two component transcriptional regulator, winged helix family [Chloroflexus aggregans DSM 9485] Length = 245 Score = 137 bits (346), Expect = 9e-31, Method: Composition-based stats. Identities = 39/220 (17%), Positives = 86/220 (39%), Gaps = 7/220 (3%) Query: 4 LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63 +I+D + + +G+ + + + D+ ++ L + + Sbjct: 21 VIEDELTIAESLRVGLTYEGMRVTVASEGRSALQIVEEQGADLVILDLML--PDIDGMVV 78 Query: 64 PRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRLK 120 R +RA S+ P+I ++ +Q + G DD + KP E+ + Sbjct: 79 CRRLRAWSEKLPIIILTARGEVQERVKGLQLGADDYIVKPFSFDELLARVNAIFRRAGIS 138 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + + + R+ + G L E +LE M + + + + S ++G Sbjct: 139 RPVTVLQVAGLSLNLETREVTLHGRAIELTPTEFALLEQFMRHPRRVFTRQTLLSRVWG- 197 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 F + N+VE HIS LR+K+ + + + +GY++ Sbjct: 198 FTYVGDSNIVEVHISNLREKIGDH-ERKLIRTVYGVGYTL 236 >gi|70732535|ref|YP_262298.1| DNA-binding heavy metal response regulator [Pseudomonas fluorescens Pf-5] gi|68346834|gb|AAY94440.1| DNA-binding heavy metal response regulator, putative [Pseudomonas fluorescens Pf-5] Length = 224 Score = 137 bits (346), Expect = 9e-31, Method: Composition-based stats. Identities = 41/223 (18%), Positives = 81/223 (36%), Gaps = 5/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D D + G ++ N+ L D+ ++ L Sbjct: 3 ILVIEDEPKTADYLHQGLTESGYVVDCANNGADGLHLTRQHAYDLVILDINL--PHIDGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119 + IR S ++ ++ L + D G DD + KP E+ R Sbjct: 61 GVLGQIRQDSSTRVMMLTAQGRLADKIRGLDLGADDYLVKPFQFPELLARVRTLMRRSEQ 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + + + L +E +L LM G +++TQI S ++ Sbjct: 121 APVPDVLRVADLELDQGRHRAFRGKQRIDLTTKEFALLHLLMRQSGVVLSRTQIISFVWD 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + + + NVVE I +LR K+ + + + R +GY ++ Sbjct: 181 M-NFDCDTNVVEVSIRRLRAKIDDPFERKLIHTLRGVGYVLEE 222 >gi|58337060|ref|YP_193645.1| response regulator [Lactobacillus acidophilus NCFM] gi|58254377|gb|AAV42614.1| response regulator [Lactobacillus acidophilus NCFM] Length = 240 Score = 137 bits (346), Expect = 9e-31, Method: Composition-based stats. Identities = 43/233 (18%), Positives = 90/233 (38%), Gaps = 15/233 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D V + F +G + + + I L + + Sbjct: 5 ILMVEDDNSVAEMMGMFFKKEGWQQDIAVDGVEAVDMFRKNADKYDLITLDLNLPKKDGI 64 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ + +RA S P+I ++ S + G D+ V KP ++AR+ A++RR+ Sbjct: 65 QVAKEVRAISPTVPIIMLTARGSESDQVLGLGIGADEYVTKPFSPIALIARIKALHRRVM 124 Query: 121 VSNNRAETGPIRVFS------------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 + + + V L +E +L + + Sbjct: 125 MEEEPDTAKEDKQDYEITTKHLKISKNRREVLFDKQPVTNLTPKEFDLLYTMAQKPKQVF 184 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ Q+ ++G ++ EE V++HI KLR+KL K+G + + +GY D Sbjct: 185 SREQLLELVWG-YEYYGEERTVDAHIKKLRQKLE-KVGAKVIQTVWGVGYKFD 235 >gi|38347978|ref|NP_941227.1| two-component-system response regulator involved in copper resistance [Serratia marcescens] gi|152973495|ref|YP_001338546.1| transcriptional regulatory protein PcoR [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|156936353|ref|YP_001440269.1| hypothetical protein ESA_04253 [Cronobacter sakazakii ATCC BAA-894] gi|157412136|ref|YP_001481477.1| PcoR [Escherichia coli APEC O1] gi|168998674|ref|YP_001687942.1| PcoR [Klebsiella pneumoniae NTUH-K2044] gi|170021402|ref|YP_001726356.1| two component heavy metal response transcriptional regulator [Escherichia coli ATCC 8739] gi|170767051|ref|ZP_02901504.1| transcriptional activator protein IrlR [Escherichia albertii TW07627] gi|238910409|ref|ZP_04654246.1| transcriptional regulatory protein PcoR [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|295697854|ref|YP_003602511.1| two component heavy metal response transcriptional regulator [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|296105206|ref|YP_003615352.1| two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|300916232|ref|ZP_07132982.1| transcriptional activator protein Irlr [Escherichia coli MS 115-1] gi|329999923|ref|ZP_08303582.1| transcriptional activator protein Irlr [Klebsiella sp. MS 92-3] gi|13632798|sp|Q47456|PCOR_ECOLX RecName: Full=Transcriptional regulatory protein pcoR gi|619132|emb|CAA58529.1| pcoR [Escherichia coli] gi|38259455|emb|CAE51683.1| probable two-component-system response regulator involved in copper resistance [Serratia marcescens] gi|99867161|gb|ABF67806.1| PcoR [Escherichia coli APEC O1] gi|150958287|gb|ABR80316.1| transcriptional regulatory protein PcoR [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|156534607|gb|ABU79433.1| hypothetical protein ESA_04253 [Cronobacter sakazakii ATCC BAA-894] gi|169756330|gb|ACA79029.1| two component heavy metal response transcriptional regulator, winged helix family [Escherichia coli ATCC 8739] gi|170124489|gb|EDS93420.1| transcriptional activator protein IrlR [Escherichia albertii TW07627] gi|295059665|gb|ADF64403.1| two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295059966|gb|ADF64703.1| two component heavy metal response transcriptional regulator [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|300416468|gb|EFJ99778.1| transcriptional activator protein Irlr [Escherichia coli MS 115-1] gi|309700444|emb|CBI99735.1| putative transcriptional regulatory protein PcoR [Escherichia coli ETEC H10407] gi|322614044|gb|EFY10980.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322617936|gb|EFY14829.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625450|gb|EFY22276.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629915|gb|EFY26688.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632196|gb|EFY28947.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636453|gb|EFY33160.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322644691|gb|EFY41227.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322651287|gb|EFY47671.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322652800|gb|EFY49139.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322659102|gb|EFY55354.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663196|gb|EFY59400.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668683|gb|EFY64836.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674513|gb|EFY70606.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322678281|gb|EFY74342.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682462|gb|EFY78483.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322684175|gb|EFY80181.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323192269|gb|EFZ77501.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323196304|gb|EFZ81456.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323201894|gb|EFZ86957.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323206437|gb|EFZ91398.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323212030|gb|EFZ96857.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216935|gb|EGA01658.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323220302|gb|EGA04756.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323224349|gb|EGA08638.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323228277|gb|EGA12408.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233455|gb|EGA17548.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323237083|gb|EGA21150.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323243702|gb|EGA27718.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323246055|gb|EGA30042.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323250832|gb|EGA34710.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323257672|gb|EGA41358.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323261881|gb|EGA45448.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323267727|gb|EGA51209.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323268607|gb|EGA52074.1| Transcriptional regulatory protein pcoR [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|323974974|gb|EGB70084.1| heavy metal response regulator [Escherichia coli TW10509] gi|328538134|gb|EGF64293.1| transcriptional activator protein Irlr [Klebsiella sp. MS 92-3] Length = 226 Score = 137 bits (346), Expect = 9e-31, Method: Composition-based stats. Identities = 39/222 (17%), Positives = 94/222 (42%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D ++G + FN+ S + D+ ++ L G ++ Sbjct: 4 ILIVEDEQKTGRYLQQGLVEEGYQADLFNNGRDGLGAASKGQYDLIILDVMLPFLDGWQI 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119 + R + + P++ ++ +++ + + G DD + KP E++ARV + R Sbjct: 64 ISALRE--SGHEEPVLFLTAKDNVRDKVKGLELGADDYLIKPFDFTELVARVRTLLRRAR 121 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + V R G+ L +E +LE L+ G+ + ++ I S ++ Sbjct: 122 SQAATVCTIADMTVDMVRRTVIRSGKKIHLTGKEYVLLELLLQRTGEVLPRSLISSLVWN 181 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + + NV++ + +LR K+ + + + R GY ++ Sbjct: 182 M-NFDSDTNVIDVAVRRLRSKIDDDFEPKLIHTVRGAGYVLE 222 >gi|127511031|ref|YP_001092228.1| two component transcriptional regulator [Shewanella loihica PV-4] gi|126636326|gb|ABO21969.1| two component transcriptional regulator, winged helix family [Shewanella loihica PV-4] Length = 225 Score = 137 bits (346), Expect = 9e-31, Method: Composition-based stats. Identities = 46/222 (20%), Positives = 100/222 (45%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D A + + F + G ++E + L +S + D+ ++ L L Sbjct: 3 ILLVEDDATTTEYVVKGFAEQGHNIETASDGHQGLLLATSMQYDLVILDRML--PQLDGL 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +L +RA P++ +S + + +G DD + KP E+L R + +R Sbjct: 61 KLLAALRATGNQTPVLILSALSHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMQRGN 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPL--PRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + E + + +V + +E ++L+YLM + + +++T +F A++ Sbjct: 121 SAPAQTELKVGELVMELLTRKVTLAGSEILLQPKEFQLLKYLMEHPNQVISRTLLFEAVW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + NV++ HI+KLR+K + +++ R GY + Sbjct: 181 D-YHFDPRTNVIDVHIAKLRRKFEELGFGELIETVRGAGYRL 221 >gi|189499944|ref|YP_001959414.1| two component transcriptional regulator, winged helix family [Chlorobium phaeobacteroides BS1] gi|189495385|gb|ACE03933.1| two component transcriptional regulator, winged helix family [Chlorobium phaeobacteroides BS1] Length = 222 Score = 137 bits (346), Expect = 9e-31, Method: Composition-based stats. Identities = 46/220 (20%), Positives = 99/220 (45%), Gaps = 4/220 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + + D ++ +++ ++ + D+ ++ L G + Sbjct: 3 ILIIEDESGIADFLREGLEEECFAVDVAHNGREGLSMALINEYDLLIVDWLL--PGLSGV 60 Query: 62 ELPRI-IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R + H+QVP+I ++ L + +SG +D + KP E+LAR+ R Sbjct: 61 EVCRQFRKEHAQVPVIFLTAKGDLDDVIFGLESGANDYMKKPFAFEELLARIRVQLRLSG 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + G + + G+ L +E +LEYL+ NRG +++I ++ + Sbjct: 121 SETVMMQAGGVEMNLAAHRVTCNGKDVSLTPKEFALLEYLLRNRGSVCTRSRIIEHVWDI 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + +V++ +++ LRKKL +++ R +GY I Sbjct: 181 H-FDADTSVIDVYVNFLRKKLDGAGCGALIETVRGVGYVI 219 >gi|220934382|ref|YP_002513281.1| two component heavy metal response transcriptional regulator, winged helix family [Thioalkalivibrio sp. HL-EbGR7] gi|219995692|gb|ACL72294.1| two component heavy metal response transcriptional regulator, winged helix family [Thioalkalivibrio sp. HL-EbGR7] Length = 226 Score = 137 bits (346), Expect = 9e-31, Method: Composition-based stats. Identities = 38/222 (17%), Positives = 94/222 (42%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G ++ L ++ D+ ++ L Sbjct: 3 ILIVEDEPKTGEYLRQGLSEAGFVVDLARDGLDGLHLATTGDYDLLILDVML--PRMDGW 60 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119 L + +R + ++P++ ++ +++ + + G DD + KP E+LARV + + R Sbjct: 61 ALLQAVRLSGREMPVLFLTARDAVEDRVRGLELGADDYLVKPFAFSELLARVRSLLRRGK 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + + R G L +E +LE L+ +G+ + ++ I S ++ Sbjct: 121 SKEPETLKAADLEIDLLRRRVTRGGTRIDLTAKEFALLELLVRRQGEVLPRSLIASQVWD 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + + NV+E + +LR K+ + + R +GY ++ Sbjct: 181 M-NFDSDTNVIEVAVRRLRAKVDEPFEPKLIRTVRGMGYVLE 221 >gi|53719003|ref|YP_107989.1| phosphate regulon two-component system response regulator [Burkholderia pseudomallei K96243] gi|53725530|ref|YP_102547.1| DNA-binding response regulator PhoB [Burkholderia mallei ATCC 23344] gi|76810912|ref|YP_333028.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia pseudomallei 1710b] gi|83719375|ref|YP_443280.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia thailandensis E264] gi|121599078|ref|YP_992631.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia mallei SAVP1] gi|124383508|ref|YP_001026567.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia mallei NCTC 10229] gi|126438629|ref|YP_001058533.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia pseudomallei 668] gi|126451028|ref|YP_001080148.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia mallei NCTC 10247] gi|126454333|ref|YP_001065793.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia pseudomallei 1106a] gi|134282840|ref|ZP_01769543.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia pseudomallei 305] gi|167002167|ref|ZP_02267957.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia mallei PRL-20] gi|167582296|ref|ZP_02375170.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia thailandensis TXDOH] gi|167621266|ref|ZP_02389897.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia thailandensis Bt4] gi|217423497|ref|ZP_03454998.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia pseudomallei 576] gi|226196210|ref|ZP_03791795.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia pseudomallei Pakistan 9] gi|237811787|ref|YP_002896238.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia pseudomallei MSHR346] gi|238562776|ref|ZP_00439864.2| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia mallei GB8 horse 4] gi|242315800|ref|ZP_04814816.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia pseudomallei 1106b] gi|254177845|ref|ZP_04884500.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia mallei ATCC 10399] gi|254180195|ref|ZP_04886794.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia pseudomallei 1655] gi|254197520|ref|ZP_04903942.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia pseudomallei S13] gi|254199458|ref|ZP_04905824.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia mallei FMH] gi|254205772|ref|ZP_04912124.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia mallei JHU] gi|254260613|ref|ZP_04951667.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia pseudomallei 1710a] gi|254298030|ref|ZP_04965483.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia pseudomallei 406e] gi|254358828|ref|ZP_04975101.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia mallei 2002721280] gi|257139516|ref|ZP_05587778.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia thailandensis E264] gi|52209417|emb|CAH35362.1| phosphate regulon two-component system response regulator [Burkholderia pseudomallei K96243] gi|52428953|gb|AAU49546.1| DNA-binding response regulator PhoB [Burkholderia mallei ATCC 23344] gi|76580365|gb|ABA49840.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia pseudomallei 1710b] gi|83653200|gb|ABC37263.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia thailandensis E264] gi|121227888|gb|ABM50406.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia mallei SAVP1] gi|124291528|gb|ABN00797.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia mallei NCTC 10229] gi|126218122|gb|ABN81628.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia pseudomallei 668] gi|126227975|gb|ABN91515.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia pseudomallei 1106a] gi|126243898|gb|ABO06991.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia mallei NCTC 10247] gi|134245926|gb|EBA46017.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia pseudomallei 305] gi|147749054|gb|EDK56128.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia mallei FMH] gi|147753215|gb|EDK60280.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia mallei JHU] gi|148027955|gb|EDK85976.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia mallei 2002721280] gi|157807759|gb|EDO84929.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia pseudomallei 406e] gi|160698884|gb|EDP88854.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia mallei ATCC 10399] gi|169654261|gb|EDS86954.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia pseudomallei S13] gi|184210735|gb|EDU07778.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia pseudomallei 1655] gi|217393355|gb|EEC33376.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia pseudomallei 576] gi|225931796|gb|EEH27798.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia pseudomallei Pakistan 9] gi|237506644|gb|ACQ98962.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia pseudomallei MSHR346] gi|238521934|gb|EEP85382.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia mallei GB8 horse 4] gi|242139039|gb|EES25441.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia pseudomallei 1106b] gi|243062154|gb|EES44340.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia mallei PRL-20] gi|254219302|gb|EET08686.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia pseudomallei 1710a] Length = 233 Score = 137 bits (346), Expect = 9e-31, Method: Composition-based stats. Identities = 45/226 (19%), Positives = 82/226 (36%), Gaps = 8/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++I+D + + G + E + L S D+ ++ L G G Sbjct: 5 ILVIEDEPAISELISVNLQHAGHCPIRAYNAEQAQSLISDVLPDLVLLDWMLPGKSGIAF 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILA------RVAA 114 R +P+I ++ Q + + G DD V KP +E++A R A Sbjct: 65 ARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRRRA 124 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 V + + L E R+L + M + + ++TQ+ Sbjct: 125 PQLTEDVVSINGLRLDPATHRVAAQSDGSEIKLDLGPTEFRLLHFFMTHPERVHSRTQLL 184 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G VEE V+ HI +LR L+ +++ R GY + Sbjct: 185 DQVWGDH-VFVEERTVDVHIKRLRAALKPAGCDAMIETVRGSGYRL 229 >gi|172058846|ref|YP_001815306.1| two component transcriptional regulator [Exiguobacterium sibiricum 255-15] gi|171991367|gb|ACB62289.1| two component transcriptional regulator, winged helix family [Exiguobacterium sibiricum 255-15] Length = 227 Score = 137 bits (346), Expect = 9e-31, Method: Composition-based stats. Identities = 42/223 (18%), Positives = 92/223 (41%), Gaps = 9/223 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G + + + + + D+ + ++ Sbjct: 5 ILIVEDDSKIARLLELELNHAGYATQVAFNGKDGLVAAEN---DIDLVLLDVMMPELSGF 61 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYR 117 E+ R +R + VP+I ++ + + D G +D V KP E + + + Sbjct: 62 EVLRRLRGKGNPVPVILLTARGEVYDKVAGLDLGANDYVTKPFEIEELLARIRGLLRLTT 121 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + V N+ + + D + L RE +L YLM N+ + + QI + + Sbjct: 122 QAAVETNQLHYADVLLDLDRHEAFRNDVPLDLTPREFDLLSYLMENKEHVLTREQILNRV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G +D E N+V+ +I LRKK+ ++ + + R +GY + Sbjct: 182 WG-YDYFGETNIVDVYIRYLRKKM-DRSQSPLIQTVRGIGYVL 222 >gi|313633173|gb|EFS00056.1| transcriptional regulatory protein SrrA [Listeria seeligeri FSL N1-067] gi|313637755|gb|EFS03112.1| transcriptional regulatory protein SrrA [Listeria seeligeri FSL S4-171] Length = 228 Score = 137 bits (346), Expect = 9e-31, Method: Composition-based stats. Identities = 43/228 (18%), Positives = 87/228 (38%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D V + F + + + + D++ I+ L + Sbjct: 3 LLMIEDNVSVCEMIEMFFMKEEIDATFVHDGKQGYETFLKEDFDIAIIDLML--PNMDGM 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 + R IR S +P+I ++ S + + G DD V KP ++AR+ A+ RR Sbjct: 61 TICRKIREVSDMPIIILTAKESESDQVLGLEMGADDYVTKPFSPLTLMARIKAVTRRKNS 120 Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + T + L +E +L +LM + + ++ Q+ Sbjct: 121 ATPAEADEDILETTYFKISKRTREIFYQGELLDALTPKEFDLLYFLMKHPRQVFSREQLL 180 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 ++G + +E V+ HI +LR+K+ + + +GY D Sbjct: 181 EQVWG-YQFYGDERTVDVHIKRLRQKIATDTKP-FLHTIWGVGYKFDE 226 >gi|260904234|ref|ZP_05912556.1| putative two-component system response regulator [Brevibacterium linens BL2] Length = 281 Score = 137 bits (346), Expect = 9e-31, Method: Composition-based stats. Identities = 37/225 (16%), Positives = 85/225 (37%), Gaps = 8/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D V + + G ++ + D+ ++ L G Sbjct: 56 LLLVEDDPTVAEVARNYLRNAGFLVDEVADGFQALESVAELVPDLVILDRKL--PGIDGT 113 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118 E+ R +R+ + VP++ ++ + + +D +SG DD + KP RE + + Sbjct: 114 EVCRRLRSFTAVPVLMLTALSATEDRIDGLESGADDYLTKPFSPRELVLRVQSILKRTVD 173 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 GP + GR G + RE +L + + + + + + +++ Sbjct: 174 ESTPEAPFRLGPFHLDVSGRRVSRNGIPLEVSAREFDLLAFFLKHPHQVFDRETLLRSVW 233 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSIDW 222 G E + + + + +LR+K+ + + + GY D Sbjct: 234 GW--EIGDPSTITVTVRRLREKIEDDPSHAQFLSTVWGAGYRFDV 276 >gi|257878630|ref|ZP_05658283.1| transcriptional regulator [Enterococcus faecium 1,230,933] gi|257881295|ref|ZP_05660948.1| transcriptional regulator [Enterococcus faecium 1,231,502] gi|257885571|ref|ZP_05665224.1| transcriptional regulator [Enterococcus faecium 1,231,501] gi|257888114|ref|ZP_05667767.1| transcriptional regulator [Enterococcus faecium 1,141,733] gi|257890512|ref|ZP_05670165.1| transcriptional regulator [Enterococcus faecium 1,231,410] gi|257893088|ref|ZP_05672741.1| transcriptional regulator [Enterococcus faecium 1,231,408] gi|257899254|ref|ZP_05678907.1| transcriptional regulator [Enterococcus faecium Com15] gi|260558210|ref|ZP_05830406.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecium C68] gi|261206900|ref|ZP_05921589.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecium TC 6] gi|289567406|ref|ZP_06447772.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecium D344SRF] gi|314940148|ref|ZP_07847328.1| putative regulatory protein VanR [Enterococcus faecium TX0133a04] gi|314943020|ref|ZP_07849824.1| putative regulatory protein VanR [Enterococcus faecium TX0133C] gi|314948138|ref|ZP_07851534.1| putative regulatory protein VanR [Enterococcus faecium TX0082] gi|314953448|ref|ZP_07856366.1| putative regulatory protein VanR [Enterococcus faecium TX0133A] gi|314993812|ref|ZP_07859149.1| putative regulatory protein VanR [Enterococcus faecium TX0133B] gi|314998162|ref|ZP_07863044.1| putative regulatory protein VanR [Enterococcus faecium TX0133a01] gi|257812858|gb|EEV41616.1| transcriptional regulator [Enterococcus faecium 1,230,933] gi|257816953|gb|EEV44281.1| transcriptional regulator [Enterococcus faecium 1,231,502] gi|257821427|gb|EEV48557.1| transcriptional regulator [Enterococcus faecium 1,231,501] gi|257824168|gb|EEV51100.1| transcriptional regulator [Enterococcus faecium 1,141,733] gi|257826872|gb|EEV53498.1| transcriptional regulator [Enterococcus faecium 1,231,410] gi|257829467|gb|EEV56074.1| transcriptional regulator [Enterococcus faecium 1,231,408] gi|257837166|gb|EEV62240.1| transcriptional regulator [Enterococcus faecium Com15] gi|260075384|gb|EEW63690.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecium C68] gi|260078528|gb|EEW66230.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecium TC 6] gi|289160802|gb|EFD08736.1| response regulator receiver:Transcriptional regulatory protein [Enterococcus faecium D344SRF] gi|313587874|gb|EFR66719.1| putative regulatory protein VanR [Enterococcus faecium TX0133a01] gi|313591735|gb|EFR70580.1| putative regulatory protein VanR [Enterococcus faecium TX0133B] gi|313594551|gb|EFR73396.1| putative regulatory protein VanR [Enterococcus faecium TX0133A] gi|313598220|gb|EFR77065.1| putative regulatory protein VanR [Enterococcus faecium TX0133C] gi|313640653|gb|EFS05233.1| putative regulatory protein VanR [Enterococcus faecium TX0133a04] gi|313645392|gb|EFS09972.1| putative regulatory protein VanR [Enterococcus faecium TX0082] Length = 236 Score = 137 bits (346), Expect = 9e-31, Method: Composition-based stats. Identities = 42/227 (18%), Positives = 91/227 (40%), Gaps = 9/227 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD + + ++G + + D+ + ++ + Sbjct: 10 ILIADDDKEIVELLSIYVHNEGYEAVKAYDGKEALSKIRTI-PDIELLILDIMMPEMDGM 68 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + +R SQ+P+I ++ + + +G DD V KP + E++ARV ++ RR K+ Sbjct: 69 QVVKELRKESQIPIIMLTAKTTDMDKIKGLVAGADDYVTKPFNPLEVMARVKSLLRRTKM 128 Query: 122 SNNRAETGPIRVFSDGRDPEVQG------EVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + V + + + + L E IL L ++ + + +IF Sbjct: 129 QIAPDQPDVLEVNALIINKDSHEVKTIDGKEIQLTALEFGILYLLASHPNRVFSADEIFE 188 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221 ++ + V V H+S LR K+ G + + +GY ID Sbjct: 189 RVW-KQESIVSAKTVMVHVSHLRDKIEEATGGEKVIQTVWGVGYKID 234 >gi|229819736|ref|YP_002881262.1| two component transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229565649|gb|ACQ79500.1| two component transcriptional regulator, winged helix family [Beutenbergia cavernae DSM 12333] Length = 227 Score = 137 bits (346), Expect = 9e-31, Method: Composition-based stats. Identities = 40/220 (18%), Positives = 84/220 (38%), Gaps = 5/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + D + + D+ ++ L G+ + Sbjct: 5 ILVVDDDPAISEMIGIVLESDDFDAVFCDDGALAVERFREEKPDLVLLDLML--PGKDGI 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR S VP++ ++ + ++G DD + KP +E++ARV A R+ Sbjct: 63 EVCREIRRTSGVPIVMLTAKSDTVDVVRGLEAGADDYIAKPFKPKELVARVRARLRQSDD 122 Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + G E L E ++ L + + + ++G Sbjct: 123 GEQERLRIGDLVLDVAGHRVLRGDETISLTPLEFDLVVALARKPWQVFTREALLEQVWGY 182 Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219 +A + +V H+ +LR K+ + + V + R +GY Sbjct: 183 RHQA-DTRLVNVHVQRLRAKVERDAEHPEVVVTVRGVGYR 221 >gi|254391878|ref|ZP_05007072.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294816204|ref|ZP_06774847.1| Two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|326444537|ref|ZP_08219271.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|197705559|gb|EDY51371.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294328803|gb|EFG10446.1| Two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 233 Score = 137 bits (346), Expect = 9e-31, Method: Composition-based stats. Identities = 49/228 (21%), Positives = 84/228 (36%), Gaps = 13/228 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +LI+D V+ G G G +E E R D+ ++ L LE Sbjct: 5 LLIEDDPAVQKGVSLALGRRGHDVEVAARGETGLLALERYRPDLVLLDLML--PQMSGLE 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA--------- 113 + R IR QVP+I +S + ++G DD + KP I AR+ Sbjct: 63 VCRRIRESKQVPIIILSARGDEIDMVVGLEAGADDYITKPAGGAIIEARMKAVLRRVAPA 122 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + G + V G L E ++L +L A G+ ++ Q+ Sbjct: 123 QDAQEAIPPAGAEHYGDLTVDRTTLVVTKHGAELALAPSELKLLLFLTAAPGQVYSRQQL 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 ++ + + +V++ + +LR K+ N V + R GY Sbjct: 183 LEQVW-EYVFYGDVRLVDACVMRLRAKIENHPRRPVYVQTVRGFGYRF 229 >gi|254430750|ref|ZP_05044453.1| two component transcriptional regulator, winged helix family [Cyanobium sp. PCC 7001] gi|197625203|gb|EDY37762.1| two component transcriptional regulator, winged helix family [Cyanobium sp. PCC 7001] Length = 254 Score = 137 bits (346), Expect = 9e-31, Method: Composition-based stats. Identities = 43/228 (18%), Positives = 88/228 (38%), Gaps = 9/228 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +LI+D + ++D G ++ + L D+ ++ L G + Sbjct: 5 ILLIEDDSDMRDLVAGHLEHGGFDVQRAEDGIKGQALALQFTPDLVLLDLMLPKVDGLTL 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R +++P++ I+ + + F+SG DD + KP E+ RV A+ RR Sbjct: 65 CQRLRRDERTARIPILMITALADTKDKVSGFNSGADDYLTKPFDLEELTVRVKALLRRTD 124 Query: 121 VSNNRAETGPIRVF------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + I F + + + L E +L L+ G+ VA + I Sbjct: 125 HAPLSTQHNEILSFGPITLVPERFEAIWFDQPVRLTHLEFELLHCLLQRHGQTVAPSLIL 184 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 ++G ++ + + H+ LR KL + + GY ++ Sbjct: 185 KEVWG-YEPDDDIETIRVHVRHLRTKLEPDPRKPRFIKTVYGAGYCLE 231 >gi|196042971|ref|ZP_03110210.1| regulatory protein VanR [Bacillus cereus 03BB108] gi|229185367|ref|ZP_04312550.1| Two-component response regulator [Bacillus cereus BGSC 6E1] gi|196026455|gb|EDX65123.1| regulatory protein VanR [Bacillus cereus 03BB108] gi|228598100|gb|EEK55737.1| Two-component response regulator [Bacillus cereus BGSC 6E1] Length = 229 Score = 137 bits (346), Expect = 9e-31, Method: Composition-based stats. Identities = 45/225 (20%), Positives = 92/225 (40%), Gaps = 10/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ ++G + + + D+ ++ L + Sbjct: 7 ILIVDDDIEIRKIISIYLRNEGYEIIDAPDAIEALDILRNTTVDLIILDIML--PKMDGI 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILA------RVAAI 115 E IR Q+P+I +S + SG +D + KP + E++A R + Sbjct: 65 EACLKIREQYQMPIIFLSAKDEDIDKIQGLMSGAEDYITKPFNPLELMARIKSQLRRYRV 124 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 Y+ +V E G ++V + R ++ E L +E IL L+ N+GK + +I+ Sbjct: 125 YQTEEVKQFIHEIGHLKVDEETRQVFIRNEEVRLTPKEFDILSLLVRNKGKVFSVEKIYE 184 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYS 219 ++ +N V HI+K+R+K+ + + +GY Sbjct: 185 MVW-EDLFYKSDNTVMVHITKIREKIEENPRQPVYLKTVWGVGYR 228 >gi|163787243|ref|ZP_02181690.1| two-component response regulator [Flavobacteriales bacterium ALC-1] gi|159877131|gb|EDP71188.1| two-component response regulator [Flavobacteriales bacterium ALC-1] Length = 228 Score = 137 bits (346), Expect = 9e-31, Method: Composition-based stats. Identities = 40/226 (17%), Positives = 86/226 (38%), Gaps = 14/226 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L+DD + + +G + + + + ++ + Sbjct: 8 ILLVDDEPDILEIVGYNLSTEGYQVITGENGVEAVEKAKKYKPHLIILDVM--MPEMDGI 65 Query: 62 ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAA 114 E IR S + ++ + + FD+G DD + KPI + ++ A + Sbjct: 66 EACERIREESDLSETIITFLTARGEDYSQVAGFDAGADDYIAKPIKPKVLLSKVKALLRR 125 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + N + G + ++ + +G+ LPR+E +L L GK + +I Sbjct: 126 LKSDENAVNTIVKIGNLVIYKEEYKITNKGKEITLPRKEFELLSLLATKPGKVFKRDEIL 185 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + V ++ HI KLR+K+ +K + + +GY Sbjct: 186 DKVWGN-EVVVGGRTIDVHIRKLREKIGDKS----FKTVKGVGYKF 226 >gi|158321721|ref|YP_001514228.1| two component transcriptional regulator [Alkaliphilus oremlandii OhILAs] gi|158141920|gb|ABW20232.1| two component transcriptional regulator, winged helix family [Alkaliphilus oremlandii OhILAs] Length = 232 Score = 137 bits (346), Expect = 9e-31, Method: Composition-based stats. Identities = 43/229 (18%), Positives = 83/229 (36%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D + ++ + + + I+ Sbjct: 4 ILVVDDEKEITDAIEVYLKNQNYNVFKAYNGIEALEVFREEEIHLVLIDIM--MPRLDGT 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + IR S VP+I +S + + G DD + KP + E+LARV + RR Sbjct: 62 KTTIKIRETSSVPIIFLSAKSEDMDKILGLNIGADDYITKPFNPMELLARVNSNLRRYTN 121 Query: 122 SNNRAETGPIRVF--------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 N + D ++ V G+ + E RIL LM+N + + +I Sbjct: 122 YANNNTPVKENMIKIGGIELKDDSKELIVDGKSIKITPLEYRILYLLMSNPNRVFSIEEI 181 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 + ++ + V HI ++R+K+ N + +GY + Sbjct: 182 YEKVWKEPAYNPD--TVTVHIRRIREKIEINPGEPRYLKVVWGVGYKFE 228 >gi|153813864|ref|ZP_01966532.1| hypothetical protein RUMTOR_00070 [Ruminococcus torques ATCC 27756] gi|317502000|ref|ZP_07960184.1| regulatory protein VanR [Lachnospiraceae bacterium 8_1_57FAA] gi|331088182|ref|ZP_08337102.1| hypothetical protein HMPREF1025_00685 [Lachnospiraceae bacterium 3_1_46FAA] gi|145848260|gb|EDK25178.1| hypothetical protein RUMTOR_00070 [Ruminococcus torques ATCC 27756] gi|316896680|gb|EFV18767.1| regulatory protein VanR [Lachnospiraceae bacterium 8_1_57FAA] gi|330408838|gb|EGG88301.1| hypothetical protein HMPREF1025_00685 [Lachnospiraceae bacterium 3_1_46FAA] Length = 232 Score = 137 bits (346), Expect = 9e-31, Method: Composition-based stats. Identities = 37/228 (16%), Positives = 83/228 (36%), Gaps = 12/228 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D +++G G + + ++ I+ + Sbjct: 7 LIVEDDKEIREGVQIYLQSQGYVVFQAADGIEGLEILEKEEIHLAIIDIM--MPRMDGIR 64 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + +R P+I +S + + G DD V KP E++ARV + RR + Sbjct: 65 MTMKLREKYDFPVIMLSAKSEEVDKITGLNIGADDYVTKPFTPMELMARVNSQLRRYRKF 124 Query: 123 NNRAETGPIRV-------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + D + + G L E +IL L N G+ + +I+ Sbjct: 125 LEKLAPQENTHVIGGLEINEDMVEVSMDGNPVKLTPIEYKILLLLAKNPGRVFSAEEIYE 184 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 ++ ++A+ + + H+ +R+K+ + + +GY I+ Sbjct: 185 RVW--QEKAINTDTIMVHVRNIREKIEIDPKNPKYLKVVWGVGYKIEK 230 >gi|194367612|ref|YP_002030222.1| winged helix family two component transcriptional regulator [Stenotrophomonas maltophilia R551-3] gi|43294862|gb|AAQ90163.2| putative responder [Xanthomonas campestris] gi|194350416|gb|ACF53539.1| two component transcriptional regulator, winged helix family [Stenotrophomonas maltophilia R551-3] Length = 229 Score = 137 bits (346), Expect = 9e-31, Method: Composition-based stats. Identities = 51/221 (23%), Positives = 95/221 (42%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + G++ E + + + D+ ++ L + + Sbjct: 11 ILIVEDEPRLASVLRDYLAAAGMTSEWVDDGGLVIDAFARYQPDLVLLDLMLPQR--DGV 68 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 +L R +RA S VP+I ++ L D G DD + KP RE++ARV A+ RR + Sbjct: 69 DLCRELRAASDVPVIMVTARVEEIDRLLGLDIGADDYICKPFSPREVVARVVAVLRRYRP 128 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + G+ L E R+L L+A G+ A+ ++ +Y Sbjct: 129 DPAARANSGLHIDEPAARATWNGKGLDLTPVEYRLLRTLLATPGRIWARDELLDRLYLDH 188 Query: 182 DEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 V+ V+SH+ LR+KL + +P+ S +GYS + Sbjct: 189 RVVVD-RTVDSHVRNLRRKLSDAGMEGEPIRSVYGMGYSYE 228 >gi|49477887|ref|YP_036945.1| two-component response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|118478209|ref|YP_895360.1| two-component response regulator [Bacillus thuringiensis str. Al Hakam] gi|196043341|ref|ZP_03110579.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|225864835|ref|YP_002750213.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|228915460|ref|ZP_04079049.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229185077|ref|ZP_04312265.1| Two component transcriptional regulator, winged helix [Bacillus cereus BGSC 6E1] gi|49329443|gb|AAT60089.1| two-component response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|118417434|gb|ABK85853.1| two-component response regulator [Bacillus thuringiensis str. Al Hakam] gi|196025650|gb|EDX64319.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|225788786|gb|ACO29003.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|228598334|gb|EEK55966.1| Two component transcriptional regulator, winged helix [Bacillus cereus BGSC 6E1] gi|228844107|gb|EEM89167.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 215 Score = 137 bits (346), Expect = 9e-31, Method: Composition-based stats. Identities = 38/220 (17%), Positives = 95/220 (43%), Gaps = 11/220 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++ DD + A F +G + E + + D++ ++ + Sbjct: 4 LIADDEQDMLRILKAYFEKEGFEVFLAKDGEEALQIFYDEKIDLAILDWM--MPKHSGIT 61 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + I+ +S V ++ ++ + L SG D+ V KP H ++ R ++L Sbjct: 62 VCQEIKKNSSVKVLMLTAKSESEDELAALQSGADEYVKKPFHPGVLITRA----KKLIQH 117 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 ++ + +++ + + + E +++ + ++G + + ++ ++G FD Sbjct: 118 DDVIQVQDLKIDFTKNKVYKNDKELDITKTELELIKCFLNHKGMILTRKKLLDIVWG-FD 176 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 EE V++H+ +LRKK+ + + + R LGYS++ Sbjct: 177 YFGEERTVDTHVRRLRKKVGE----NIIKTHRGLGYSLEE 212 >gi|218248934|ref|YP_002374305.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 8801] gi|218169412|gb|ACK68149.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8801] Length = 224 Score = 137 bits (346), Expect = 9e-31, Method: Composition-based stats. Identities = 43/221 (19%), Positives = 89/221 (40%), Gaps = 6/221 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L++D + + +++ E L + D+ ++ L + Sbjct: 4 LLVEDDPRIATVLADSLKEQRYTVDVAEDGEKGWQLIEAFPYDLILLDVML--PKLDGIS 61 Query: 63 LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120 L + +R +P++ ++ + + + D G DD V KP E+ AR+ A + R Sbjct: 62 LCQRLRKSGYAIPVLMLTAKDTSEDKVMGLDVGADDYVVKPFDLPELSARIRALLRRGNT 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + + + + L +E +LE + N ++++ I ++ Sbjct: 122 SLSPILAWNQLSLNPNTYQVTYGEKPLHLTPKEYSLLELFLRNPHLVLSRSMILDHLWSF 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 D E V+ HI +LRKKLRN D +++ LGY + Sbjct: 182 ED-PPSEEAVKVHIKELRKKLRNVGSLPDFIETVYGLGYRL 221 >gi|108763277|ref|YP_632939.1| DNA-binding response regulator PhoP1 [Myxococcus xanthus DK 1622] gi|45720780|emb|CAG17624.1| response regulator phoP1 [Myxococcus xanthus] gi|108467157|gb|ABF92342.1| DNA-binding response regulator phoP1 [Myxococcus xanthus DK 1622] Length = 226 Score = 137 bits (346), Expect = 9e-31, Method: Composition-based stats. Identities = 43/223 (19%), Positives = 85/223 (38%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKV 60 ++I+D + G E ++ + D+ ++ L G +V Sbjct: 4 ILIIEDEQDLAGLVDYNLRAAGFETETASTGASGLAKARAHPPDLVLLDLMLPDVAGSEV 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYR 117 L + + + +I +S + + G DD V KP RE + V Sbjct: 64 LRMLKADTELRKASVIIVSAKGQESDRVQGLELGADDYVVKPFSVRELLLRVKAVLRRAD 123 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + +G I + + V+GE L E R+L L+ + + + S + Sbjct: 124 AEDGPSAVLASGDISLDTTRHQVRVKGEEVLLTALEFRLLRTLLERSDRVQTREVLLSDV 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G+ + V++HI +LR+KL D +++ R +GY + Sbjct: 184 WGI-QAEIHTRTVDTHIKRLREKLGPAG--DIIETVRGVGYKL 223 >gi|210630068|ref|ZP_03296230.1| hypothetical protein COLSTE_00114 [Collinsella stercoris DSM 13279] gi|210160688|gb|EEA91659.1| hypothetical protein COLSTE_00114 [Collinsella stercoris DSM 13279] Length = 236 Score = 137 bits (346), Expect = 9e-31, Method: Composition-based stats. Identities = 51/225 (22%), Positives = 96/225 (42%), Gaps = 8/225 (3%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEK 59 M ++D ++ + G+ EGF S + + D ++ L G + Sbjct: 12 MIYYVEDDDNIRGLTLYALRQQGIEAEGFASDSEFKAAVARRVPDAVLLDIMLPDTDGLE 71 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 ++ R +A + VP++ ++ S + D G DD + KP E+ +R A+ RR Sbjct: 72 IMRRLRADQATATVPIMMLTAKDSELDKVVALDGGADDYLTKPFSLMELTSRCRALLRRG 131 Query: 120 KVSNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 +++ A R V+G+ L RE +LEYLM G + + Sbjct: 132 GMTSRPASETLQVGGIELSPSRRTVRVEGQELKLTLREFDLLEYLMRKPGVVFTRESLLQ 191 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +++G +D V+ H+ LR+KL + D +++ R +GY + Sbjct: 192 SVWG-WDFDGGSRTVDVHVQTLRQKLGDH--ADRIETVRGVGYRL 233 >gi|167756098|ref|ZP_02428225.1| hypothetical protein CLORAM_01618 [Clostridium ramosum DSM 1402] gi|167704090|gb|EDS18669.1| hypothetical protein CLORAM_01618 [Clostridium ramosum DSM 1402] Length = 250 Score = 137 bits (346), Expect = 9e-31, Method: Composition-based stats. Identities = 47/234 (20%), Positives = 88/234 (37%), Gaps = 17/234 (7%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + G ++ N+ + + R D+ ++ + Sbjct: 20 ILVVEDEIEIAKAIEIYLKSQGYNVYIANNGKAGLEMV--ERYDIHLAIVDIMMPVMDGI 77 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ IR + P+I +S + + G DD V KP E+LARV++ RR Sbjct: 78 EMTMKIRENYDFPIIFLSAKSEDIDKITGLNIGGDDYVTKPFVPMELLARVSSQLRRYHK 137 Query: 122 SNNRAETGPIRV------------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 N D ++ V G+ + E +ILE LM G+ + Sbjct: 138 YLNMIGKIQEDQAANKYVVGGLELDLDTKEVSVDGKAVKVTPIELKILELLMEKPGRVFS 197 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 QI+ ++ + A+ V H+ LR+K+ N + +GY I+ Sbjct: 198 SEQIYENVW--HEAAINTETVMVHVRNLREKIEINPSNPQYLKVVWGVGYKIEK 249 >gi|29375010|ref|NP_814163.1| DNA-binding response regulator [Enterococcus faecalis V583] gi|227519052|ref|ZP_03949101.1| response regulator [Enterococcus faecalis TX0104] gi|227553742|ref|ZP_03983791.1| response regulator [Enterococcus faecalis HH22] gi|229547739|ref|ZP_04436464.1| response regulator [Enterococcus faecalis TX1322] gi|229548299|ref|ZP_04437024.1| response regulator [Enterococcus faecalis ATCC 29200] gi|255970931|ref|ZP_05421517.1| two-component response regulator [Enterococcus faecalis T1] gi|256617297|ref|ZP_05474143.1| two-component response regulator [Enterococcus faecalis ATCC 4200] gi|256761300|ref|ZP_05501880.1| two-component response regulator [Enterococcus faecalis T3] gi|256852353|ref|ZP_05557729.1| response regulator [Enterococcus faecalis T8] gi|256959583|ref|ZP_05563754.1| two-component system response regulator [Enterococcus faecalis Merz96] gi|257080788|ref|ZP_05575149.1| DNA-binding response regulator [Enterococcus faecalis E1Sol] gi|257083459|ref|ZP_05577820.1| two-component system response regulator [Enterococcus faecalis Fly1] gi|257088874|ref|ZP_05583235.1| two component system response regulator [Enterococcus faecalis CH188] gi|257415107|ref|ZP_05592101.1| two-component response regulator [Enterococcus faecalis AR01/DG] gi|257418153|ref|ZP_05595147.1| two component system response regulator [Enterococcus faecalis T11] gi|293384250|ref|ZP_06630138.1| DNA-binding response regulator SrrA [Enterococcus faecalis R712] gi|293387019|ref|ZP_06631587.1| DNA-binding response regulator SrrA [Enterococcus faecalis S613] gi|300861877|ref|ZP_07107957.1| response regulator receiver domain protein [Enterococcus faecalis TUSoD Ef11] gi|307275240|ref|ZP_07556386.1| response regulator receiver domain protein [Enterococcus faecalis TX2134] gi|307288746|ref|ZP_07568724.1| response regulator receiver domain protein [Enterococcus faecalis TX0109] gi|307292514|ref|ZP_07572363.1| response regulator receiver domain protein [Enterococcus faecalis TX0411] gi|312900547|ref|ZP_07759847.1| response regulator receiver domain protein [Enterococcus faecalis TX0470] gi|312904930|ref|ZP_07764069.1| response regulator receiver domain protein [Enterococcus faecalis TX0635] gi|312906317|ref|ZP_07765328.1| response regulator receiver domain protein [Enterococcus faecalis DAPTO 512] gi|312909663|ref|ZP_07768517.1| response regulator receiver domain protein [Enterococcus faecalis DAPTO 516] gi|312952008|ref|ZP_07770892.1| response regulator receiver domain protein [Enterococcus faecalis TX0102] gi|29342469|gb|AAO80234.1| DNA-binding response regulator [Enterococcus faecalis V583] gi|44933142|gb|AAS49388.1| response regulator [Enterococcus faecalis] gi|227073499|gb|EEI11462.1| response regulator [Enterococcus faecalis TX0104] gi|227177124|gb|EEI58096.1| response regulator [Enterococcus faecalis HH22] gi|229306515|gb|EEN72511.1| response regulator [Enterococcus faecalis ATCC 29200] gi|229307231|gb|EEN73218.1| response regulator [Enterococcus faecalis TX1322] gi|255961949|gb|EET94425.1| two-component response regulator [Enterococcus faecalis T1] gi|256596824|gb|EEU16000.1| two-component response regulator [Enterococcus faecalis ATCC 4200] gi|256682551|gb|EEU22246.1| two-component response regulator [Enterococcus faecalis T3] gi|256712207|gb|EEU27239.1| response regulator [Enterococcus faecalis T8] gi|256950079|gb|EEU66711.1| two-component system response regulator [Enterococcus faecalis Merz96] gi|256988818|gb|EEU76120.1| DNA-binding response regulator [Enterococcus faecalis E1Sol] gi|256991489|gb|EEU78791.1| two-component system response regulator [Enterococcus faecalis Fly1] gi|256997686|gb|EEU84206.1| two component system response regulator [Enterococcus faecalis CH188] gi|257156935|gb|EEU86895.1| two-component response regulator [Enterococcus faecalis ARO1/DG] gi|257159981|gb|EEU89941.1| two component system response regulator [Enterococcus faecalis T11] gi|291078398|gb|EFE15762.1| DNA-binding response regulator SrrA [Enterococcus faecalis R712] gi|291083561|gb|EFE20524.1| DNA-binding response regulator SrrA [Enterococcus faecalis S613] gi|295114236|emb|CBL32873.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Enterococcus sp. 7L76] gi|300848402|gb|EFK76159.1| response regulator receiver domain protein [Enterococcus faecalis TUSoD Ef11] gi|306496436|gb|EFM66004.1| response regulator receiver domain protein [Enterococcus faecalis TX0411] gi|306500215|gb|EFM69554.1| response regulator receiver domain protein [Enterococcus faecalis TX0109] gi|306508108|gb|EFM77232.1| response regulator receiver domain protein [Enterococcus faecalis TX2134] gi|310627692|gb|EFQ10975.1| response regulator receiver domain protein [Enterococcus faecalis DAPTO 512] gi|310630008|gb|EFQ13291.1| response regulator receiver domain protein [Enterococcus faecalis TX0102] gi|310631814|gb|EFQ15097.1| response regulator receiver domain protein [Enterococcus faecalis TX0635] gi|311290065|gb|EFQ68621.1| response regulator receiver domain protein [Enterococcus faecalis DAPTO 516] gi|311292372|gb|EFQ70928.1| response regulator receiver domain protein [Enterococcus faecalis TX0470] gi|315028498|gb|EFT40430.1| response regulator receiver domain protein [Enterococcus faecalis TX4000] gi|315144040|gb|EFT88056.1| response regulator receiver domain protein [Enterococcus faecalis TX2141] gi|315146803|gb|EFT90819.1| response regulator receiver domain protein [Enterococcus faecalis TX4244] gi|315153816|gb|EFT97832.1| response regulator receiver domain protein [Enterococcus faecalis TX0031] gi|315167757|gb|EFU11774.1| response regulator receiver domain protein [Enterococcus faecalis TX1341] gi|315172811|gb|EFU16828.1| response regulator receiver domain protein [Enterococcus faecalis TX1346] gi|315574822|gb|EFU87013.1| response regulator receiver domain protein [Enterococcus faecalis TX0309B] gi|315576415|gb|EFU88606.1| response regulator receiver domain protein [Enterococcus faecalis TX0630] gi|315582269|gb|EFU94460.1| response regulator receiver domain protein [Enterococcus faecalis TX0309A] gi|323479529|gb|ADX78968.1| response regulator [Enterococcus faecalis 62] gi|327534112|gb|AEA92946.1| response regulator [Enterococcus faecalis OG1RF] Length = 230 Score = 137 bits (346), Expect = 9e-31, Method: Composition-based stats. Identities = 43/226 (19%), Positives = 88/226 (38%), Gaps = 9/226 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++I+D + D + +++ + + + D+ ++ L E Sbjct: 6 LIIEDDPSIADLQKDYLEINDMTVTIEHDGKKGLEAALNEPFDLIILDVML--PTMDGFE 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120 + R IR Q P++ +S + G DD + KP E++AR A R + Sbjct: 64 ICRAIRKKKQTPIMIVSAKKEDIDKIRGLGLGADDYIIKPFSPNELVARAKAHMNRYQLL 123 Query: 121 ----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + I V + V +E ++L +LM + + K ++F + Sbjct: 124 SKAEQPPQLLKINEIAVDTAAHKVFVLENEVIFTSKEYKLLVFLMEHPNRVWNKEELFES 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221 ++G E + V HI ++R+KL+ D P+++ GY + Sbjct: 184 VWGFDALDTEVSTVVVHIKRIREKLKKANLSDSPIETLWGSGYRFN 229 >gi|326777882|ref|ZP_08237147.1| two component transcriptional regulator, winged helix family [Streptomyces cf. griseus XylebKG-1] gi|326658215|gb|EGE43061.1| two component transcriptional regulator, winged helix family [Streptomyces cf. griseus XylebKG-1] Length = 250 Score = 137 bits (346), Expect = 9e-31, Method: Composition-based stats. Identities = 45/233 (19%), Positives = 90/233 (38%), Gaps = 22/233 (9%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D A ++ G ++ + D+ ++ L + Sbjct: 22 LVVEDDATIRRAVQLALERYGYRVDVAADGLGGLEAFRAGAHDLLILDVML--PELDGIG 79 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R IR S VP++ +S + ++G DD V KP+ ++AR+ A+ RR Sbjct: 80 LCRRIREESPVPVLMMSARGDALDVVAGLEAGADDYVIKPVDTGVMVARIRALLRRATFR 139 Query: 123 N---------------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167 + G + V + G + GE L E R+L A G Sbjct: 140 PDPEGPAAAGRSGRADHVLVFGDLSVDTLGMEVSRAGEPVSLTPTELRLLLEFAAAPGSV 199 Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + ++ ++ + + VV+ + +LRKK+ G +++ R GY + Sbjct: 200 LDRRRLLREVWD-YGWEGDTRVVDLCVLRLRKKI----GSGRIETVRGFGYKL 247 >gi|312197790|ref|YP_004017851.1| transcriptional regulator [Frankia sp. EuI1c] gi|311229126|gb|ADP81981.1| two component transcriptional regulator, winged helix family [Frankia sp. EuI1c] Length = 229 Score = 137 bits (346), Expect = 9e-31, Method: Composition-based stats. Identities = 50/223 (22%), Positives = 94/223 (42%), Gaps = 5/223 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D ++G +++ W S DV ++ L E Sbjct: 4 LVVEDEPRTAALLRRGLAEEGFAVDVVADGGDAVWQASEITYDVIVLDLML--PVLDGFE 61 Query: 63 LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R +R A P++ +S + + D G DD + KP E+ AR+ A+ RR Sbjct: 62 VCRRLRAAERWAPVLMLSARGEVVDRVRGLDVGADDYLGKPFSFDELSARLRALIRRGAQ 121 Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + +R+ R G L +E +LEYLM + G+ +++T I ++ L Sbjct: 122 ERPVVLDIDGLRLDPTVRAASRDGVELDLSPKEFALLEYLMRHPGQVLSRTTILDHVWDL 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 NVV+ +++ LR+K+ G +++ R GY + N Sbjct: 182 A-YDRNSNVVDQYVAYLRRKIDKPFGVAQLETVRGAGYRLRVN 223 >gi|229153423|ref|ZP_04281601.1| DNA-binding response regulator [Bacillus cereus m1550] gi|228630027|gb|EEK86678.1| DNA-binding response regulator [Bacillus cereus m1550] Length = 224 Score = 137 bits (346), Expect = 9e-31, Method: Composition-based stats. Identities = 43/226 (19%), Positives = 90/226 (39%), Gaps = 12/226 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +++ +G + + DV ++ L Sbjct: 4 ILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALERWNEG-PDVLILDVML--PDTDGY 60 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL R+ R +P++ ++ + L G DD V KP ++ E++ RV + RR+K Sbjct: 61 ELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRVK 120 Query: 121 VSNNRAETG-----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + I + R V G+ L RE + + ++N + + ++ Sbjct: 121 KTEVAVSHEVIEAGEIVICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 180 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G F+ V+ + +LRKKL + + + +GY +D Sbjct: 181 KVWG-FEYIGNTRAVDIMVQRLRKKLGTSG--EYIKTIYGVGYKLD 223 >gi|257790764|ref|YP_003181370.1| two component transcriptional regulator, winged helix family [Eggerthella lenta DSM 2243] gi|257474661|gb|ACV54981.1| two component transcriptional regulator, winged helix family [Eggerthella lenta DSM 2243] Length = 235 Score = 137 bits (346), Expect = 9e-31, Method: Composition-based stats. Identities = 45/229 (19%), Positives = 84/229 (36%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LIDD + ++ GD G + + D+ ++ Sbjct: 4 ILLIDDENSIARLVGSMAGDAGYAFAYAEDGAEGLVVAEREAPDLVIMDVM--MPRMDGF 61 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 R++R P+I +S + F +G DD + KP RE+L + A RR Sbjct: 62 TTCRLMRERGITCPVIFLSAKGDIVDKGVGFQAGGDDYMVKPFDPRELLMHIEAHLRRAS 121 Query: 121 V-------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + G + GE L +E +I L ++ G ++K Q+ Sbjct: 122 MAAAPVAPRGDILHAGRFVLDRGQFRVTKDGERLSLTPKEFKIFFALASSPGLVLSKEQL 181 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 A +G + E + + I KLR+K+ + + + +GY + Sbjct: 182 VEAAWGK-EFVGETSSITVFIKKLREKVEDDPSDPRVIQTVWGIGYRFE 229 >gi|120612957|ref|YP_972635.1| two component transcriptional regulator [Acidovorax citrulli AAC00-1] gi|120591421|gb|ABM34861.1| two component transcriptional regulator, winged helix family [Acidovorax citrulli AAC00-1] Length = 248 Score = 137 bits (346), Expect = 9e-31, Method: Composition-based stats. Identities = 47/230 (20%), Positives = 87/230 (37%), Gaps = 16/230 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + A DG+ + L + D+ ++ L G L+ Sbjct: 15 LVVEDEPGIATILSAYLQRDGLRARQAHDGLEALRLFRQLKPDMVLLDIHL--PGMDGLD 72 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------------LA 110 L R IR Q P+I ++ L G DD V KP E+ Sbjct: 73 LLRAIREDGQTPVIMVTALADDVDKLVGLRLGADDYVVKPFSPPEVVARVRAVLRRAQAQ 132 Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 A ++ R E + + + PL E R+L L A + ++ Sbjct: 133 PAAPARAAQRIRVGRIEIDQEAHAAFAHGDDGRAVPLPLTLTEYRLLACLAAQPRRCFSR 192 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + L + + V++SH+SKLR+KL+ + +++ R +GY + Sbjct: 193 SHLIEHC--LPESDALDRVIDSHLSKLRRKLQQAGQGELIETVRGIGYRL 240 >gi|88800114|ref|ZP_01115683.1| possible baeR; Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Reinekea sp. MED297] gi|88777095|gb|EAR08301.1| possible baeR; Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Reinekea sp. MED297] Length = 229 Score = 137 bits (346), Expect = 9e-31, Method: Composition-based stats. Identities = 47/222 (21%), Positives = 90/222 (40%), Gaps = 3/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + + G + + D+ ++ L + Sbjct: 5 ILVIEDEFQIAAIHRDYLNAAGYEVTCLDDGTQAVEWIRDNTPDLILLDLML--PVKDGH 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + +R S VP+I ++ L + G DD + KP RE++ARV A+ RR + Sbjct: 63 TICQEVRQFSNVPIIMVTAKVDEIDRLLGLEQGADDYICKPFSAREVVARVRAVLRRQEP 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + ++ D L E +L+ L+++ GK +++++ + IY Sbjct: 123 TYYERAQSALQFNEDTLSVSTASTQIELTVVEFELLKALVSHPGKIFSRSRLAAIIYSDH 182 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 V E ++SHI K+RKKL + + S GY + N Sbjct: 183 -RIVSERTIDSHIKKIRKKLAAEPINLTIQSVYGAGYKAEPN 223 >gi|258621380|ref|ZP_05716414.1| Probable transcriptional regulator ycf27 [Vibrio mimicus VM573] gi|258626807|ref|ZP_05721614.1| Probable transcriptional regulator ycf27 [Vibrio mimicus VM603] gi|258580854|gb|EEW05796.1| Probable transcriptional regulator ycf27 [Vibrio mimicus VM603] gi|258586768|gb|EEW11483.1| Probable transcriptional regulator ycf27 [Vibrio mimicus VM573] Length = 236 Score = 137 bits (346), Expect = 9e-31, Method: Composition-based stats. Identities = 41/226 (18%), Positives = 78/226 (34%), Gaps = 11/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ G G + + L + D+ ++ G+ Sbjct: 7 ILVVDDNQELREALKDYLGKAGFEVICAENGAVMWKLLETQNPDLIILDIM--MPGDDGF 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-------ILARVAA 114 L + +R HS VP+I ++ + + G DD + K RE IL R Sbjct: 65 TLCQKLRKHSSVPIIMLTAVTEETDRVTGLELGADDYITKSFSPRELLARIKAILRRSQL 124 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + V L + +L + + K + + I Sbjct: 125 SDSLSVARKVTFAGWQLDTITRQLKHLETHAVKQLSGADLSLLGLFINHAEKILTRDDIA 184 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I+G D E ++ IS+LR L +K + + R GY + Sbjct: 185 REIWGR-DADPFERGIDVQISRLRTHLEDK-DRTLILTVRNKGYML 228 >gi|300361402|ref|ZP_07057579.1| response regulator [Lactobacillus gasseri JV-V03] gi|300354021|gb|EFJ69892.1| response regulator [Lactobacillus gasseri JV-V03] Length = 236 Score = 137 bits (346), Expect = 9e-31, Method: Composition-based stats. Identities = 42/231 (18%), Positives = 95/231 (41%), Gaps = 13/231 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D V + F + ++ + + + + L + + Sbjct: 4 ILMVEDDNSVAEMMKMFFSKEQWEVDIAKDGVEAVEMFKAHPDSYDIVTLDLNLPKKDGM 63 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ + IRA S +P+I ++ S + G D+ V KP ++AR+ A+YRR Sbjct: 64 EVAKEIRAISLSIPIIMLTARDSETDQILGLGIGADEYVTKPFSPLALIARIKALYRRSH 123 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPL----------PRRERRILEYLMANRGKRVAK 170 + + + ++ + ++ + + +E +L + + ++ Sbjct: 124 IEKDMHASNGLKYDVITKHLKISKDRREVRFDDNIVEGLTPKEFDLLYTMAQKPKQVFSR 183 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ ++G ++ EE V++HI KLR+KL K G V + +GY D Sbjct: 184 DKLLELVWG-YEFFGEERTVDAHIKKLRQKLE-KAGPQVVQTVWGVGYKFD 232 >gi|226953341|ref|ZP_03823805.1| positive response regulator for the pho regulon, autophosphorylate and phosphorylate sensor [Acinetobacter sp. ATCC 27244] gi|294651956|ref|ZP_06729245.1| phosphate regulon transcriptional regulatory protein [Acinetobacter haemolyticus ATCC 19194] gi|226835879|gb|EEH68262.1| positive response regulator for the pho regulon, autophosphorylate and phosphorylate sensor [Acinetobacter sp. ATCC 27244] gi|292822188|gb|EFF81102.1| phosphate regulon transcriptional regulatory protein [Acinetobacter haemolyticus ATCC 19194] Length = 236 Score = 137 bits (346), Expect = 9e-31, Method: Composition-based stats. Identities = 40/224 (17%), Positives = 87/224 (38%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ G + + R + ++ L G G + Sbjct: 6 ILIVDDELPIREMIHTSLDMAGFQCLQAEDAKQAHQIIVDQRPALILLDWMLPG-GVSGV 64 Query: 62 ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 +L R ++ +P+I ++ + D+G DD + KP RE+++R+ A+ RR Sbjct: 65 DLCRRLKRDENLAEIPVIMLTARGEEDHKVQGLDAGADDYMTKPFSTRELVSRIKAVLRR 124 Query: 119 LKVSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + + + + E R+L + M + + + Q+ Sbjct: 125 ANALSGEKVIDANGLMLDPVSQRVSFGESILDMGPTEYRLLAFFMTHPERAYTRAQLLDQ 184 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + +E+ ++ HI +LRK L V + R GY Sbjct: 185 VWG-GNVYIEDRTIDVHIRRLRKVLEPFGVDRFVQTVRGTGYRF 227 >gi|38639718|ref|NP_943487.1| DNA-binding transcriptional activator CusR [Klebsiella pneumoniae] gi|168998689|ref|YP_001687957.1| DNA-binding transcriptional activator CusR [Klebsiella pneumoniae NTUH-K2044] gi|38016816|gb|AAR07837.1| SilR [Klebsiella pneumoniae] gi|238549704|dbj|BAH66055.1| silver resistance two-component system response regulator [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 226 Score = 137 bits (346), Expect = 9e-31, Method: Composition-based stats. Identities = 38/223 (17%), Positives = 99/223 (44%), Gaps = 6/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G ++ ++ L +A D+ ++ L Sbjct: 3 ILIVEDEIKTGEYLSKGLTEAGFVVDHADNGLTGYHLAMTAEYDLVILDIML--PDVNGW 60 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118 ++ R++R A +P++ ++ +++ + + G DD + KP E+LARV Sbjct: 61 DIIRMLRTAGKGMPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGN 120 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++ ++ + + R G L +E +LE+ + ++G+ + ++ I S ++ Sbjct: 121 TMITESQFRVADLSMDLVSRKVSRAGNRIVLTSKEFSLLEFFIRHQGEVLPRSLIASQVW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + + N ++ + +LR K+ N G + + R +GY ++ Sbjct: 181 DM-NFDSDTNAIDVAVKRLRAKIDNDYGTKLIQTVRGVGYILE 222 >gi|229591602|ref|YP_002873721.1| response regulatory protein [Pseudomonas fluorescens SBW25] gi|229363468|emb|CAY50681.1| response regulatory protein [Pseudomonas fluorescens SBW25] Length = 223 Score = 137 bits (345), Expect = 9e-31, Method: Composition-based stats. Identities = 36/221 (16%), Positives = 86/221 (38%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + + G S+ DV ++ Sbjct: 3 ILVVEDEPKAGNYLLNGLQELGYSVSLARDGVDGLHQALETPFDVIVLDVM--MPKMDGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120 E+ R +R + P++ ++ + + + G DD + KP E++AR+ R Sbjct: 61 EVLRRLRKEADTPVLFLTARDDIADRIKGLELGADDYLIKPFSFAELVARLRTLTRRGPS 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + +++ R G L +E +L ++ + ++++ I S ++ + Sbjct: 121 REEEQLQIADLQIDVLKRRVTRAGTRITLTNKEFALLHLFATHQDQVLSRSLIASRVWDM 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + NVV+ + +LR K+ + + S R +GY D Sbjct: 181 -NFDSDTNVVDVAVRRLRLKIDDPFQLKLIHSVRGIGYRFD 220 >gi|81298906|ref|YP_399114.1| two component transcriptional regulator [Synechococcus elongatus PCC 7942] gi|81167787|gb|ABB56127.1| two component transcriptional regulator, winged helix family [Synechococcus elongatus PCC 7942] Length = 249 Score = 137 bits (345), Expect = 9e-31, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 90/228 (39%), Gaps = 9/228 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++IDD + + + G + + L D+ ++ L G V Sbjct: 5 ILVIDDDSAILELVAVNLEMSGYDVRKAEDGIKGQALAVQLVPDLIMLDLMLPRVDGFTV 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R +++P++ ++ Q ++ F++G DD + KP E+LARV A+ +R Sbjct: 65 CQRLRRDERTAEIPVLMLTALGQTQDKVEGFNAGADDYLTKPFEVEEMLARVRALLQRTD 124 Query: 121 VSNNRAETGPIRVF------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + A I + + + L E +L L+ G+ VA ++I Sbjct: 125 RIPHAARHSEILSYGPLTLIPERFEAIWFNRTVKLTHLEFELLHCLLQRHGQTVAPSEIL 184 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 ++G +D + + HI LR KL + + + GY ++ Sbjct: 185 KEVWG-YDPDDDIETIRVHIRHLRTKLEPDPRHPRYIKTVYGAGYCLE 231 >gi|30265287|ref|NP_847664.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47530822|ref|YP_022171.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49188099|ref|YP_031352.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|65317232|ref|ZP_00390191.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bacillus anthracis str. A2012] gi|165869866|ref|ZP_02214523.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167641807|ref|ZP_02400048.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170708959|ref|ZP_02899391.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|177654055|ref|ZP_02936065.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190567646|ref|ZP_03020558.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|227818024|ref|YP_002818033.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|229601800|ref|YP_002869478.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|254735190|ref|ZP_05192899.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254755698|ref|ZP_05207731.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|254759571|ref|ZP_05211596.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|30259965|gb|AAP29150.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47505970|gb|AAT34646.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49182026|gb|AAT57402.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|164714189|gb|EDR19709.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167510219|gb|EDR85624.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170126124|gb|EDS95019.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|172080938|gb|EDT66017.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190561062|gb|EDV15035.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|227006593|gb|ACP16336.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|229266208|gb|ACQ47845.1| DNA-binding response regulator [Bacillus anthracis str. A0248] Length = 223 Score = 137 bits (345), Expect = 9e-31, Method: Composition-based stats. Identities = 43/226 (19%), Positives = 88/226 (38%), Gaps = 12/226 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +++ +G + + DV ++ L Sbjct: 3 ILVVDDESSIRNLIRMQLEMEGYEVLTAADGREVLERWNEG-PDVLILDVML--PDTDGY 59 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL R+ R +P++ ++ + L G DD V KP ++ E++ RV + RR+K Sbjct: 60 ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRRVK 119 Query: 121 VSNNRAETGPIRVFSDGRDP-----EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 I P V + L RE + + ++N + + ++ Sbjct: 120 KKEVTVSHEVIEAGEITICPKERKVHVSEQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 179 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G F+ V+ + +LRKKL N + + + +GY +D Sbjct: 180 KVWG-FEYIGNTRAVDIMVQRLRKKLGNSG--EYIKTIYGVGYKLD 222 >gi|331085549|ref|ZP_08334633.1| hypothetical protein HMPREF0987_00936 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330407436|gb|EGG86938.1| hypothetical protein HMPREF0987_00936 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 226 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 45/225 (20%), Positives = 98/225 (43%), Gaps = 10/225 (4%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 M ++D + +++ + G+ GF + ++ ++ L GE Sbjct: 1 MIYCVEDDSNIRELVVYTLESTGMKACGFPDGTAFMKALAFETPELVLLDIML--PGEDG 58 Query: 61 LELPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 + L + ++ +P+I ++ + + DSG DD V KP E+++RV A+ R Sbjct: 59 ISLLKKLKSSAKTKDIPVIMVTAKGAEYDKVIGLDSGADDYVTKPFGMMELISRVKAVLR 118 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK--RVAKTQIFS 175 R K + + D + EV+ + P+ + + R K +++ ++ Sbjct: 119 RTKREEKSTKYEIRNLILDQKKHEVRVDGIPVTLTLKEFELLELLIRNKNIVLSRDRLLE 178 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G +D E ++ HI LR+KL++ D +++ R +GY + Sbjct: 179 EVWG-YDFDGETRTIDVHIRTLRQKLKSAG--DLIETVRGVGYRM 220 >gi|328958774|ref|YP_004376160.1| regulatory protein VanR [Carnobacterium sp. 17-4] gi|328675098|gb|AEB31144.1| regulatory protein VanR [Carnobacterium sp. 17-4] Length = 229 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 38/226 (16%), Positives = 86/226 (38%), Gaps = 9/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + ++G +E + + + + ++ + ++ Sbjct: 3 ILVVDDDKEIVELLSIYIQNEGYEVEKAYNGKEALTKIKTIK-NIDLMVLDVMMPNMDGN 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------AI 115 ++ + +R Q+P++ +S + + +G DD V KP + E++AR+ Sbjct: 62 QVVKEVRKEMQLPILMLSAKTTDIDKIKGLVTGADDYVAKPFNPLEVMARIKSLLRRSNY 121 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + N + + GE L E IL L ++ + + +IF Sbjct: 122 MTNSQEQNKLEVGPLLIEKESHEVRTINGEFIQLTALEFGILYLLASHPNRVFSADEIFE 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220 ++ + V V H+S LR K+ G + + +GY I Sbjct: 182 RVW-QQESLVSAKTVMVHVSHLRDKIEEATGGEKVIQTVWGVGYKI 226 >gi|315650118|ref|ZP_07903194.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Eubacterium saburreum DSM 3986] gi|315487610|gb|EFU77917.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Eubacterium saburreum DSM 3986] Length = 230 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 43/228 (18%), Positives = 84/228 (36%), Gaps = 10/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD + + + E + S + ++ G Sbjct: 4 ILVIDDDRELCALIRHTVLQESIEAECCHFGRVGLEKLKSNEYQLIILDVM--MPGFDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115 IR S +P++ + + + +G DD + KP E+ L R + Sbjct: 62 HTLEQIRKESCIPVLMFTAKNDSFSKVRGLRNGADDYMTKPFVMEELLARIISLIRRYTM 121 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + R + + D R + F LP +E +L + N+G+ + K QI+ Sbjct: 122 FNRNGNEAKTLNYDGLIIDLDTRSFTTEKGTFELPPKEFDLLLFCAKNQGRIMTKQQIYE 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 ++G + N + S IS+LRKKL + + + + +GY + Sbjct: 182 KVWGEPYVYDDSN-IMSVISRLRKKLETDPGNPKYIQTVKGIGYRFNK 228 >gi|255281374|ref|ZP_05345929.1| DNA-binding response regulator YycF [Bryantella formatexigens DSM 14469] gi|255267862|gb|EET61067.1| DNA-binding response regulator YycF [Bryantella formatexigens DSM 14469] Length = 237 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 37/233 (15%), Positives = 80/233 (34%), Gaps = 15/233 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + A G L D+ ++ L G+ + Sbjct: 8 LIVEDDEDISMVEEAYLEAAGFDTAICRDGGEVAGLLGKESFDLILLDLML--PGKSGYD 65 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI-----------LAR 111 + R IR +P++ ++ + G DD + KP E+ Sbjct: 66 ICREIREQVDIPILMVTARTETVDKIRGLGLGADDYIAKPFDPAELVARVTANLRQYDRM 125 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + I +R+ + P RE +L++L N ++ Sbjct: 126 MRKIPEEKTEEPEEICVADLRILVNSWKVYKGEREIKFPNREFELLKFLAMNPNIVFSRE 185 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223 Q+F I+G +D + V HI+++R+K+ + +++ GY + + Sbjct: 186 QLFEKIWG-YDYVGDSVTVMVHINRIREKIEDDSKNPKILETVWGAGYRFNKD 237 >gi|300812325|ref|ZP_07092761.1| response regulator receiver domain protein [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300496745|gb|EFK31831.1| response regulator receiver domain protein [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 230 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 42/227 (18%), Positives = 94/227 (41%), Gaps = 9/227 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + ++G + + S+ D++ + ++ + Sbjct: 5 ILVVDDDHEIVELLSIYLKNEGYEPIAAYNGKEALTKLSTT-PDIALMILDVMMPNLSGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + +R S +P+I +S + +G DD V+KP + E++ARV ++ RR + Sbjct: 64 DVVKEVRKDSDIPIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRRSRK 123 Query: 122 SNNRAETGP------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + I V+G+ L E IL L ++ + + +IF Sbjct: 124 QVKEEQPDVLEVGPLIINKDSHEVKTVEGKEIRLTALEFGILYLLASHPNRVFSADEIFE 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 ++ + V V H+S LR K++ G + + + +GY ++ Sbjct: 184 RVW-QQESIVSAKTVMVHVSHLRDKIQKATDGEEVIKTVWGVGYKVE 229 >gi|296156999|ref|ZP_06839836.1| two component transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] gi|295892885|gb|EFG72666.1| two component transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] Length = 226 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 43/222 (19%), Positives = 92/222 (41%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + G ++ + + D+ ++ L G+ Sbjct: 3 ILLVEDEPKTGAYLRKGLSEAGYVVDWAEDGVTGQHQAETEDYDLLILDVML--PGQDGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120 L + +R P++ ++ + + + G DD + KP E++ARV +I R Sbjct: 61 TLLQNLRRTRSTPVLFLTARDDVGDRVRGLELGADDYLAKPFDFVELVARVRSILRRGKP 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + + + R QG+V L +E +L LM G+ + + I S ++ + Sbjct: 121 RESMSLKVADLELDLTRRKATRQGDVILLTAKEFTLLWLLMRKEGEILPRATIASQVWDM 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + + NVV+S I +LR K+ + + + R +GY ++ Sbjct: 181 -NFNSDTNVVDSAIRRLRSKVDDAYEPKLIHTVRGMGYVLEV 221 >gi|169824609|ref|YP_001692220.1| two-component DNA-binding response regulator [Finegoldia magna ATCC 29328] gi|167831414|dbj|BAG08330.1| two-component DNA-binding response regulator [Finegoldia magna ATCC 29328] Length = 218 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 40/220 (18%), Positives = 99/220 (45%), Gaps = 6/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++++G + G + + + +++ ++ L L Sbjct: 3 LLVVEDDKMIREGICEFLSEFGYKTYQAEDGKQAISIFENNEINLAILDIQL--PYINGL 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + IR S +P I ++ + + ++ F S D + KP + R+ ++ ++ Sbjct: 61 DVLKKIRETSDIPAIMLTAFSDEEYKINAFTSLADGYIEKPFSLPVLKVRIESLIKKHYG 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 +N V ++ G+ + +E IL+Y++ N G+ + + QI +++ Sbjct: 121 NNETFNYKNTEVNFASYTAKLNGKKVDVNAKELEILKYMIENEGQALTRMQIIDSVWKET 180 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 DE + V++ +I +LRKKL D + + R +GY ++ Sbjct: 181 DEIPFDRVIDVYIKELRKKLEL----DCIVTIRNVGYKLE 216 >gi|160895466|ref|YP_001561048.1| two component transcriptional regulator [Delftia acidovorans SPH-1] gi|160361050|gb|ABX32663.1| two component transcriptional regulator, winged helix family [Delftia acidovorans SPH-1] Length = 262 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 47/221 (21%), Positives = 93/221 (42%), Gaps = 5/221 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++I+D AL G + + + DV ++ L G L+ Sbjct: 33 LIIEDDALNARYIAEGLRQQGAQVAVCSDGVQGIAMAVGESWDVIILDRMLP-NGFDGLQ 91 Query: 63 LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA--AIYRRL 119 + + +R+ Q P++ +S + + +G DD + KP E+ AR+ ++ Sbjct: 92 ILQTLRSMGKQTPVLVLSALSATDERVRGLKAGCDDYLTKPFAFSELSARLEALVRRAQI 151 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +R+ R E G+ L RE R+L +LM + + V +T + +++ Sbjct: 152 PAPAREMRLADLRLNLLTRSAERAGQPLALQPREFRLLAFLMQHAHQIVTRTMLLESVWD 211 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + NV++ HIS+LR K+ + + R +GYS+ Sbjct: 212 -YRFDPQTNVIDVHISRLRGKVDKGFEPALIHTVRGVGYSL 251 >gi|254976797|ref|ZP_05273269.1| two-component response regulator [Clostridium difficile QCD-66c26] gi|255094183|ref|ZP_05323661.1| two-component response regulator [Clostridium difficile CIP 107932] gi|255315935|ref|ZP_05357518.1| two-component response regulator [Clostridium difficile QCD-76w55] gi|255518594|ref|ZP_05386270.1| two-component response regulator [Clostridium difficile QCD-97b34] gi|255651714|ref|ZP_05398616.1| two-component response regulator [Clostridium difficile QCD-37x79] gi|260684746|ref|YP_003216031.1| two-component response regulator [Clostridium difficile CD196] gi|260688404|ref|YP_003219538.1| two-component response regulator [Clostridium difficile R20291] gi|306521513|ref|ZP_07407860.1| two-component response regulator [Clostridium difficile QCD-32g58] gi|260210909|emb|CBA66124.1| two-component response regulator [Clostridium difficile CD196] gi|260214421|emb|CBE06850.1| two-component response regulator [Clostridium difficile R20291] Length = 223 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 42/223 (18%), Positives = 92/223 (41%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++ + G + N + S D+ ++ Sbjct: 4 ILVVEDEKRMQSIIVEYMQKGGYTCITANDGVEALTILKSNNIDLMILDIM--MPYLDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R+ R + +P+I ++ + L ++ G DD + KP + +LA+V A+ RR Sbjct: 62 SVCRVSREMTNIPIIILTAKGEEEDKLKGYEYGADDYITKPFSPKVLLAKVNALLRRYTT 121 Query: 122 SNNRAETGPIRVFSD--GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + ++F R V+ ++ L +E +L M N + ++ ++ + I+G Sbjct: 122 DIPKNSLSLGKIFIMVASRQVYVEDKLIDLTYKEFELLRLFMENPNQVFSREKLLNCIWG 181 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D V++HI LRKKL ++ + + GY + Sbjct: 182 -YDFEGNTRTVDTHIKTLRKKLGSEGHH--IVTLIRSGYKFEV 221 >gi|24376106|ref|NP_720149.1| osmolarity response regulator [Shewanella oneidensis MR-1] gi|24351138|gb|AAN57593.1|AE015895_2 transcriptional regulatory protein OmpR [Shewanella oneidensis MR-1] Length = 241 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 36/229 (15%), Positives = 85/229 (37%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ + G + + E + L + ++ L GE L Sbjct: 8 ILVVDDDMRLRALLERYLMEQGYQVRSAANAEQMDRLLERENFHLIVLDLML--PGEDGL 65 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112 + R +R S +P++ ++ + + G DD + KP + RE + + Sbjct: 66 SICRRLRQQGSTIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQT 125 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + G + R+ E L E +L+ L+ + + +++ + Sbjct: 126 QDVPGAPAQQEAEIRFGEFSLDLATREMYHGDEAIVLTSGEFAVLKVLVTHPREPLSRDK 185 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + + G D + E ++ +S+LR+ + + + + LGY Sbjct: 186 LMNLARGR-DYSALERSIDVQVSRLRRLIEKDPANPRYIQTVWGLGYVF 233 >gi|53716914|ref|YP_105697.1| DNA-binding response regulator IrlR [Burkholderia mallei ATCC 23344] gi|53722061|ref|YP_111046.1| transcriptional activator protein [Burkholderia pseudomallei K96243] gi|76818559|ref|YP_335189.1| DNA-binding response regulator IrlR [Burkholderia pseudomallei 1710b] gi|121596825|ref|YP_989627.1| transcriptional activator IrlR [Burkholderia mallei SAVP1] gi|124381657|ref|YP_001024226.1| transcriptional activator IrlR [Burkholderia mallei NCTC 10229] gi|126444012|ref|YP_001062520.1| transcriptional activator protein IrlR [Burkholderia pseudomallei 668] gi|126445741|ref|YP_001078366.1| transcriptional activator IrlR [Burkholderia mallei NCTC 10247] gi|126456086|ref|YP_001075473.1| transcriptional activator IrlR [Burkholderia pseudomallei 1106a] gi|134283471|ref|ZP_01770171.1| transcriptional activator IrlR [Burkholderia pseudomallei 305] gi|167003030|ref|ZP_02268820.1| transcriptional activator IrlR [Burkholderia mallei PRL-20] gi|167723508|ref|ZP_02406744.1| transcriptional activator IrlR [Burkholderia pseudomallei DM98] gi|167742474|ref|ZP_02415248.1| transcriptional activator IrlR [Burkholderia pseudomallei 14] gi|167819642|ref|ZP_02451322.1| transcriptional activator IrlR [Burkholderia pseudomallei 91] gi|167828025|ref|ZP_02459496.1| transcriptional activator IrlR [Burkholderia pseudomallei 9] gi|167849481|ref|ZP_02474989.1| transcriptional activator IrlR [Burkholderia pseudomallei B7210] gi|167898085|ref|ZP_02485487.1| transcriptional activator IrlR [Burkholderia pseudomallei 7894] gi|167906419|ref|ZP_02493624.1| transcriptional activator IrlR [Burkholderia pseudomallei NCTC 13177] gi|167914754|ref|ZP_02501845.1| transcriptional activator IrlR [Burkholderia pseudomallei 112] gi|167922645|ref|ZP_02509736.1| transcriptional activator IrlR [Burkholderia pseudomallei BCC215] gi|217419095|ref|ZP_03450602.1| transcriptional activator IrlR [Burkholderia pseudomallei 576] gi|226199348|ref|ZP_03794907.1| transcriptional activator IrlR [Burkholderia pseudomallei Pakistan 9] gi|237509707|ref|ZP_04522422.1| transcriptional activator protein IrlR [Burkholderia pseudomallei MSHR346] gi|238562934|ref|ZP_00439668.2| transcriptional activator protein IrlR [Burkholderia mallei GB8 horse 4] gi|242312627|ref|ZP_04811644.1| transcriptional activator IrlR [Burkholderia pseudomallei 1106b] gi|254174272|ref|ZP_04880934.1| transcriptional activator IrlR [Burkholderia mallei ATCC 10399] gi|254183534|ref|ZP_04890126.1| transcriptional activator IrlR [Burkholderia pseudomallei 1655] gi|254190152|ref|ZP_04896661.1| transcriptional activator IrlR [Burkholderia pseudomallei Pasteur 52237] gi|254193175|ref|ZP_04899610.1| transcriptional activator IrlR [Burkholderia pseudomallei S13] gi|254200501|ref|ZP_04906866.1| transcriptional activator IrlR [Burkholderia mallei FMH] gi|254204526|ref|ZP_04910879.1| transcriptional activator IrlR [Burkholderia mallei JHU] gi|254263255|ref|ZP_04954120.1| transcriptional activator IrlR [Burkholderia pseudomallei 1710a] gi|254300419|ref|ZP_04967865.1| transcriptional activator IrlR [Burkholderia pseudomallei 406e] gi|254356844|ref|ZP_04973119.1| transcriptional activator IrlR [Burkholderia mallei 2002721280] gi|55977758|sp|O31395|IRLR_BURPS RecName: Full=Transcriptional activator protein irlR gi|52212475|emb|CAH38501.1| transcriptional activator protein [Burkholderia pseudomallei K96243] gi|52422884|gb|AAU46454.1| DNA-binding response regulator IrlR [Burkholderia mallei ATCC 23344] gi|76583032|gb|ABA52506.1| DNA-binding response regulator IrlR [Burkholderia pseudomallei 1710b] gi|121224623|gb|ABM48154.1| transcriptional activator IrlR [Burkholderia mallei SAVP1] gi|124289677|gb|ABM98946.1| transcriptional activator IrlR [Burkholderia mallei NCTC 10229] gi|126223503|gb|ABN87008.1| transcriptional activator protein IrlR [Burkholderia pseudomallei 668] gi|126229854|gb|ABN93267.1| transcriptional activator IrlR [Burkholderia pseudomallei 1106a] gi|126238595|gb|ABO01707.1| transcriptional activator IrlR [Burkholderia mallei NCTC 10247] gi|134245220|gb|EBA45314.1| transcriptional activator IrlR [Burkholderia pseudomallei 305] gi|147748113|gb|EDK55188.1| transcriptional activator IrlR [Burkholderia mallei FMH] gi|147754112|gb|EDK61176.1| transcriptional activator IrlR [Burkholderia mallei JHU] gi|148025871|gb|EDK83994.1| transcriptional activator IrlR [Burkholderia mallei 2002721280] gi|157809906|gb|EDO87076.1| transcriptional activator IrlR [Burkholderia pseudomallei 406e] gi|157937829|gb|EDO93499.1| transcriptional activator IrlR [Burkholderia pseudomallei Pasteur 52237] gi|160695318|gb|EDP85288.1| transcriptional activator IrlR [Burkholderia mallei ATCC 10399] gi|169649929|gb|EDS82622.1| transcriptional activator IrlR [Burkholderia pseudomallei S13] gi|184214067|gb|EDU11110.1| transcriptional activator IrlR [Burkholderia pseudomallei 1655] gi|217398399|gb|EEC38414.1| transcriptional activator IrlR [Burkholderia pseudomallei 576] gi|225928563|gb|EEH24591.1| transcriptional activator IrlR [Burkholderia pseudomallei Pakistan 9] gi|235001912|gb|EEP51336.1| transcriptional activator protein IrlR [Burkholderia pseudomallei MSHR346] gi|238521676|gb|EEP85126.1| transcriptional activator protein IrlR [Burkholderia mallei GB8 horse 4] gi|242135866|gb|EES22269.1| transcriptional activator IrlR [Burkholderia pseudomallei 1106b] gi|243061379|gb|EES43565.1| transcriptional activator IrlR [Burkholderia mallei PRL-20] gi|254214257|gb|EET03642.1| transcriptional activator IrlR [Burkholderia pseudomallei 1710a] Length = 229 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 41/222 (18%), Positives = 87/222 (39%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + G + + D+ ++ L G Sbjct: 3 ILIVEDEPKTGMYLRKGLTEAGFIADWVEDGVTGLHQAETEEYDLIILDVML--PGHDGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120 + +R P++ ++ + + + G DD V KP E++ARV +I R Sbjct: 61 TVLERLRRAHSTPVLFLTARDDVGDRVKGLELGADDYVVKPFDFVELVARVRSILRRGQA 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + + R QG+V L +E +L LM G+ + + I S ++ + Sbjct: 121 RESTVLRIADLELDLTRRKATRQGDVVLLTAKEFALLWLLMRREGEILPRATIASQVWDM 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + + NVV++ I +LR K+ + + + R +GY ++ Sbjct: 181 -NFNSDTNVVDAAIRRLRSKIDDAYEPKLIHTVRGMGYVLEV 221 >gi|323485029|ref|ZP_08090382.1| hypothetical protein HMPREF9474_02133 [Clostridium symbiosum WAL-14163] gi|323693598|ref|ZP_08107799.1| vanr protein [Clostridium symbiosum WAL-14673] gi|323401585|gb|EGA93930.1| hypothetical protein HMPREF9474_02133 [Clostridium symbiosum WAL-14163] gi|323502335|gb|EGB18196.1| vanr protein [Clostridium symbiosum WAL-14673] Length = 235 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 37/230 (16%), Positives = 81/230 (35%), Gaps = 13/230 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D ++ + + F S E S D++ ++ L L Sbjct: 5 ILVVDDEKEIADLIEVYLQNENMDVYKFYSGEEALVCIGSTDFDLAILDIML--PDISGL 62 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH---------REILAR 111 + + IR P+I ++ + G DD + KP + + Sbjct: 63 SICQSIRSKEYTYPVIMLTAKDGETDKITGLTLGADDYITKPFLPLELVARVKAQLRRYK 122 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + ++ + + + + + GE L E IL L+ + V+ Sbjct: 123 KYNAGSAVPAADEIFKYAGLTMNIKTYECRLNGETLSLTPTEFSILRILLERKCSVVSAE 182 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 ++F ++ N + HI LR+K+++ + + +GY I Sbjct: 183 ELFHEVWQEEYYTKSNNTITVHIRHLREKMKDTGENPRYIKTVWGVGYKI 232 >gi|326773621|ref|ZP_08232904.1| DNA-binding response regulator [Actinomyces viscosus C505] gi|326636851|gb|EGE37754.1| DNA-binding response regulator [Actinomyces viscosus C505] Length = 219 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 47/222 (21%), Positives = 86/222 (38%), Gaps = 10/222 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + G + L D+ ++ L Sbjct: 4 ILIVEDEPRIVAFLTKGLKAAGFTTHTTAEGGQAVALAVQEDFDLIILDVGL--PDIDGF 61 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118 E+ + +R P+I ++ S+ + + G DD + KP E+ RV Sbjct: 62 EVLQQLRGQGVGTPVIMLTARSSVADRVAGLEGGADDYMPKPFSFEELLARIRVRLRPDA 121 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 R + + R ++G L RE + E M + G+ +++ Q+ SA++ Sbjct: 122 TGPDQMRLTHRDMVLDLRTRTLTLEGRTVELSAREFALAETFMRHPGQVLSREQLLSAVW 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 GL D NVVE ++S LR KL G V++ R +GY + Sbjct: 182 GL-DFDPGSNVVEVYVSYLRNKL----GRQRVETVRGMGYRL 218 >gi|187779953|ref|ZP_02996426.1| hypothetical protein CLOSPO_03549 [Clostridium sporogenes ATCC 15579] gi|187773578|gb|EDU37380.1| hypothetical protein CLOSPO_03549 [Clostridium sporogenes ATCC 15579] Length = 233 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 44/228 (19%), Positives = 86/228 (37%), Gaps = 10/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + G E + + ++ ++ L Sbjct: 5 IMIIEDDKNIAKLLGEHIEKYGYEALVAKDFEKILEIFEMEKPNLILLDVNL--PKFDGY 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-------REILARVAA 114 R IR S P+I IS S + +SG DD + KP ++ + L RV Sbjct: 63 YWCRRIREKSLCPIIFISARDSEMNQVMAIESGADDYITKPFYYEVVLAKIKSQLRRVYG 122 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 Y + + + + G+ L ++E +L+ +M K + ++ Sbjct: 123 DYAANSQVERILDVEGLLFYPERLQVHFNGKEAMLSKKEGDLLDAMMKIYPKVATREELL 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 I+ V+EN + +I++LRKKL + D +++ R GY ++ Sbjct: 183 EKIWDDTTF-VDENTLNVNIARLRKKLSDLGIKDSIETVRGAGYRLNV 229 >gi|156744257|ref|YP_001434386.1| two component transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156235585|gb|ABU60368.1| two component transcriptional regulator, winged helix family [Roseiflexus castenholzii DSM 13941] Length = 239 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 45/226 (19%), Positives = 94/226 (41%), Gaps = 9/226 (3%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + +++DD + + +G + ++ DV ++ Sbjct: 8 LILVVDDEPRMVNFMRMNLELEGCRVVSASNGREALEKVRDEMPDVVLLDIM--MPVMDG 65 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E R +R S VP++ ++ + + + G DD + KP HRE+++R+ A+ RR Sbjct: 66 FETLRRLRQASSVPVLVLTAKDDEEDRIKGLELGADDYIGKPFSHRELVSRIRAVLRRHY 125 Query: 121 VSNNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + +++ R+ V GE L E R+L +L+ N G + Q+ S Sbjct: 126 TPPPAPQTLVKVDDRLQIDFARREVLVNGERVNLRPTEYRLLYHLVQNAGYVMTHEQLLS 185 Query: 176 AIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220 ++G E + + +I+ LR+K+ + + ++R +GY Sbjct: 186 KVWGPEYRD-ETHYLRLYITYLRQKIEEDPANPKYILTERGIGYRF 230 >gi|108799871|ref|YP_640068.1| two component transcriptional regulator [Mycobacterium sp. MCS] gi|119868981|ref|YP_938933.1| two component transcriptional regulator [Mycobacterium sp. KMS] gi|108770290|gb|ABG09012.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. MCS] gi|119695070|gb|ABL92143.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. KMS] Length = 263 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 52/229 (22%), Positives = 94/229 (41%), Gaps = 14/229 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + + + S + DV ++ L G LE Sbjct: 34 LVVDDETALAEVVASYLEREQFEASVVGSGAEAIAVARGLDPDVVILDIGL--PGIDGLE 91 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +R S ++ ++ + T+ G DD V KP RE++AR+ A+ RR ++ Sbjct: 92 VCRQLRTFSDAYVVMLTARNTELDTVLGLTVGADDYVTKPFSPRELVARIRAMLRRPRMR 151 Query: 123 ----------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 GP+ + R+ + GE L R E ILE L A G +++ Q Sbjct: 152 PVAGADTEDLPPPRVFGPLSIDVAAREVGLDGESILLTRTEFDILEALSARPGVVLSRRQ 211 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220 + + E++V+ HI LR+KL + + + R +GY + Sbjct: 212 LLDIVREGP-WVGNEHLVDVHIGHLRRKLGDDAANPRFIMTVRGVGYRM 259 >gi|297200162|ref|ZP_06917559.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] gi|197713388|gb|EDY57422.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sviceus ATCC 29083] Length = 225 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 45/223 (20%), Positives = 86/223 (38%), Gaps = 6/223 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L +D A + + +G +E D+ ++ L G LE Sbjct: 5 LLAEDDASISEPLARALRREGYEVEVREDGPTALDAGMQGGIDLVVLDLGL--PGMDGLE 62 Query: 63 LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-HREILARVAAIYRRLK 120 + R +RA VP++ ++ T+ D+G DD V KP + A + R Sbjct: 63 VARRLRAEGHAVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAA 122 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 T +R+ + + E L +E +L L+ + G+ V + Q+ ++ Sbjct: 123 EPAQPPATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 182 Query: 181 FDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222 + ++ HIS LRKKL + + + R +G+ + Sbjct: 183 TWWS-STKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEK 224 >gi|325479533|gb|EGC82629.1| response regulator receiver domain protein [Anaerococcus prevotii ACS-065-V-Col13] Length = 225 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 44/221 (19%), Positives = 88/221 (39%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + + + + + + + ++ + Sbjct: 5 ILVVDDNDEICNIVTLYLENSSFKVFEAKNGKEALEFLKNDKISLMILDIM--MPEMDGI 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + I P+I +S S++ ++ G DD + KP E++ARV A+ RR Sbjct: 63 EVLKTIGNDRDFPIIFLSAKSSVKDKIEGLYLGADDYLAKPFDPAELVARVIALLRRNNH 122 Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 +N D R G V L +E +L M GK K +I+ ++ Sbjct: 123 RSNNIIKVGNLSWDKDKRLIYKNGNVLNLRSKEYELLTMFMTTPGKVFTKQEIYENLWQS 182 Query: 181 FDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 + ++N + HIS LR+K+ + + + R LGY + Sbjct: 183 YYFE-DDNTIMVHISNLREKIEDNPRSPTKIITIRGLGYML 222 >gi|270284725|ref|ZP_05966555.2| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Bifidobacterium gallicum DSM 20093] gi|270276295|gb|EFA22149.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Bifidobacterium gallicum DSM 20093] Length = 226 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 38/228 (16%), Positives = 83/228 (36%), Gaps = 16/228 (7%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + +G + ++ + D+ ++ L LE Sbjct: 2 LVVEDEPTLATAIAQRLTAEGWIARVASDGASAVQASTTLKPDLVIMDVML--PVMDGLE 59 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA--------- 113 + I A VP++ ++ + +G DD + KP RE++AR Sbjct: 60 ATKRIVAMRPVPVLMLTARDDETDKIIGLGAGADDYMTKPFSMRELVARCKALLRRVERA 119 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + + + G + + R + GE L E +L L + + Q+ Sbjct: 120 KVIAQNSQNEKILDYGSLVIDPTQRVVTLNGESVHLTPTEFDLLVTLARKPKSVLTREQL 179 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ D + V+SH+ LR KL + + + +GY+ + Sbjct: 180 LEEVWDWVDASG-TRTVDSHVKALRHKLGSST----IRTVHGVGYAFE 222 >gi|238059275|ref|ZP_04603984.1| two-component system response regulator [Micromonospora sp. ATCC 39149] gi|237881086|gb|EEP69914.1| two-component system response regulator [Micromonospora sp. ATCC 39149] Length = 230 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 48/223 (21%), Positives = 99/223 (44%), Gaps = 9/223 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD+ + D + G + + + + ++ L E Sbjct: 8 LVVDDQPNIVDMLATVLRFHGFDVVTATTAAEALRRAGESHPRLVVLDVLL--PDGDGFE 65 Query: 63 LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R +RA + ++ ++ + + + G DD V KP E++ARV A+ RR+ Sbjct: 66 VCRTLRAAGHEIGIVFLTARDAPRDRIAGLTYGGDDYVTKPFSVEELVARVRAVLRRIGS 125 Query: 122 SNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + A + + G + L E ++L +LM N G+ +++ QI A+ Sbjct: 126 TPVPATGVLRYADLELDEETCEVRRGGRLLSLSPTEYKLLRHLMLNPGRVLSRAQILDAV 185 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + +D NVV+++I LR+KL + LG ++++R GY++ Sbjct: 186 W-RYDFDGASNVVDTYIGYLRRKL-DPLGPPLIETRRGFGYAL 226 >gi|110799909|ref|YP_694689.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124] gi|168206598|ref|ZP_02632603.1| DNA-binding response regulator [Clostridium perfringens E str. JGS1987] gi|168210569|ref|ZP_02636194.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC 3626] gi|168217561|ref|ZP_02643186.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239] gi|182625212|ref|ZP_02952987.1| DNA-binding response regulator [Clostridium perfringens D str. JGS1721] gi|110674556|gb|ABG83543.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124] gi|170661960|gb|EDT14643.1| DNA-binding response regulator [Clostridium perfringens E str. JGS1987] gi|170711371|gb|EDT23553.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC 3626] gi|177909524|gb|EDT71964.1| DNA-binding response regulator [Clostridium perfringens D str. JGS1721] gi|182380359|gb|EDT77838.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239] Length = 223 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 40/225 (17%), Positives = 85/225 (37%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +G + L + D+ ++A L Sbjct: 3 ILVVDDEVSILQLIKMNLEIEGHVPITAENALDALELVIKEKPDIIILDAML--PDISGF 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L I+ +P+I ++ + L G DD + KP + E++ R+ + + + Sbjct: 61 NLIPKIKNIDDIPIIMLTAKSDINDKLLGLQLGADDYITKPFNSTELILRINIVGKHISS 120 Query: 122 SNNRAETGPIRVF----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + D R ++ E L +E +L L N+ K ++ ++ + + Sbjct: 121 DSKKKVKDLTVGDLTLLLDERKALIKSEYINLTFKEFEVLRCLCQNKNKVFSREELLNKV 180 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +G +D V+ I +LRKKL + + + GY +D Sbjct: 181 WG-YDFEGTTRAVDILIQRLRKKLG--PCQNYIKTLYKAGYKLDE 222 >gi|156743599|ref|YP_001433728.1| two component transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156234927|gb|ABU59710.1| two component transcriptional regulator, winged helix family [Roseiflexus castenholzii DSM 13941] Length = 226 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 48/225 (21%), Positives = 82/225 (36%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD L D G + D+ ++ Sbjct: 3 ILVADDDLASVKLTSFLLEDAGYRVIKAYDAAGVLHAIEQRTPDLVLLDVG--MPKVSGF 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116 ++ R IR S VP+I ++ LQ + G DD + KP E+LAR Sbjct: 61 DICRQIRRMSDVPIIFVTGSGQLQDRVTGLQIGGDDYLVKPFEPAELLARVEAVLRRRNS 120 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + ++ + G L E R+L YLM N G+ ++ QI + Sbjct: 121 DMVNPVTRISQGPLTLDPIEHTVLFEDGRHVVLTPIEFRLLYYLMQNSGRVLSPDQILNK 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 ++G +D E N+V ++ +LR K+ + + + R LGY Sbjct: 181 VWG-YDYEGESNLVAVYVRRLRAKIESDGESPRHIITVRNLGYKF 224 >gi|312622039|ref|YP_004023652.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor kronotskyensis 2002] gi|312202506|gb|ADQ45833.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor kronotskyensis 2002] Length = 234 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 45/223 (20%), Positives = 86/223 (38%), Gaps = 7/223 (3%) Query: 4 LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63 ++DD + + G S++ F + E + D+ ++ L E+ Sbjct: 8 IVDDEKDILELVSEYLTQKGYSVKTFENGESFLKEFEKSEPDIVILDIML--PDIDGYEI 65 Query: 64 PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH----HREILARVAAIYRRL 119 + IR +S+VP+I +S + + G DD + KP I + + + Sbjct: 66 CKRIRKNSEVPIIMLSAKGEELDKVLGLELGSDDYIPKPFSLSELEARIKKILRRVNKSP 125 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +N E I+V + R+ G L +E L+ K + + I I+G Sbjct: 126 IKQDNVIEMFGIKVDFNQRNVFYNGTHIELSPKEFETFALLLKESNKVLKRNCILERIWG 185 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +E +V+ I +LRKK+ + + LGY ++ Sbjct: 186 DPALY-DERMVDDVIKRLRKKILQYNLPVEIKTMWGLGYKLEE 227 >gi|260682102|ref|YP_003213387.1| two-component response regulator [Clostridium difficile CD196] gi|260685700|ref|YP_003216833.1| two-component response regulator [Clostridium difficile R20291] gi|260208265|emb|CBA60671.1| two-component response regulator [Clostridium difficile CD196] gi|260211716|emb|CBE02025.1| two-component response regulator [Clostridium difficile R20291] Length = 244 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 93/228 (40%), Gaps = 9/228 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++IDD + + +S + L R +S + ++ + Sbjct: 16 LIIDDDKELCALMKKCVEQENLSAITAHCGAEGLHLLDKNRHTLSLVILDIMMPDIDGFQ 75 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121 + + IR S +P+I ++ + G DD + KP E++ARV ++ RR + Sbjct: 76 VLKKIRETSNIPVIMLTAKNDEDDKVSGLRLGADDYLTKPFSINELMARVNSLIRRYTML 135 Query: 122 ------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + + R + L +E +L +L +N+G+ K QI++ Sbjct: 136 NPAFITDTDCIIINGMIIDKTNRIVSINNIPVQLTSKEFDLLAFLASNKGRVFTKKQIYT 195 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDW 222 ++ + A +++ + S ISKLRKK+ + + R +GY + Sbjct: 196 QVW-EEEYAFDDSNIMSFISKLRKKIEPDPNHPFYILTVRGVGYRFNK 242 >gi|6002654|gb|AAF00081.1|AF095713_1 response regulator CsrR [Streptococcus pyogenes] Length = 228 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 48/224 (21%), Positives = 90/224 (40%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + DG + + D+ ++ L Sbjct: 5 ILIIEDEKNLARFVSLELQPDGYEVIVEVNGREGLETALEGEFDLILLDLML--PEMDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R ++ ++ ++ S+ + D G DD + KP E+LAR+ AI+RR + Sbjct: 63 EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122 Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + R + L +RE +L LM N + + + ++ S Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +DEAVE NVV+ +I LR K+ + + R +GY I Sbjct: 183 VW-KYDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225 >gi|163794790|ref|ZP_02188760.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [alpha proteobacterium BAL199] gi|159180063|gb|EDP64588.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [alpha proteobacterium BAL199] Length = 229 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 50/224 (22%), Positives = 97/224 (43%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D F + G +++ +L + D ++ L G L Sbjct: 5 ILIVEDDIETAAYMERGFVEQGYAVDRTADGREGLFLATGQDYDAVVLDRML--PGLDGL 62 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + + +RA Q P++ +S +L + +G DD + KP E+ AR+ A+ RR Sbjct: 63 SVLKAVRAAGVQTPVLILSAMGALDERVRGLRAGSDDYLVKPFAFVELHARIDALIRRSA 122 Query: 121 VSNNRAETGPIRVFSD----GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + + R G PL +RE ++LEYLM + G+ V +T + Sbjct: 123 AGTEAPPSRLVVADLELDLLSRKVTRAGRPIPLQQREFQMLEYLMRHAGRVVTRTMLLEG 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ + + NV++ HIS+LR+K+ + + R GY + Sbjct: 183 VW-NYHFDPQTNVIDVHISRLRQKVDKDFDSPLIHTVRGSGYML 225 >gi|332653533|ref|ZP_08419278.1| phosphate regulon response regulator PhoB [Ruminococcaceae bacterium D16] gi|332518679|gb|EGJ48282.1| phosphate regulon response regulator PhoB [Ruminococcaceae bacterium D16] Length = 224 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 91/224 (40%), Gaps = 7/224 (3%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEK 59 M +++D A ++ + G+ +GF+ ++ ++ L G + Sbjct: 1 MIYILEDDASIRKLVVYTLQSQGMEAQGFDRPSQFWEAMEKGSPELVLLDIMLPEEDGLQ 60 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIY 116 VL+ R + A +P+I ++ + + D G DD V KP E++ARV Sbjct: 61 VLKRLRSMPATKTLPVIMLTAKSTEYDKVLGLDEGADDYVAKPFGMMELMARVRTALRHA 120 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + G + V + L +E ++L L+ G + Q+ + Sbjct: 121 GQNQPKEKTYSLGSLFVDPERHIVRDGDREVTLTLKEFQVLCLLLERAGTVFTRDQLLNT 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I+G ++ V+ HI LR+KL D +++ R +GY I Sbjct: 181 IWG-YEFDGASRTVDVHIRTLRQKLGKSG--DCIETVRGIGYKI 221 >gi|300741844|ref|ZP_07071865.1| DNA-binding response regulator [Rothia dentocariosa M567] gi|300381029|gb|EFJ77591.1| DNA-binding response regulator [Rothia dentocariosa M567] Length = 231 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 45/214 (21%), Positives = 93/214 (43%), Gaps = 4/214 (1%) Query: 6 DDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPR 65 DD + + + +G + + D+ ++ L G+ +E+ Sbjct: 12 DDDDALAEMIGIVLAQEGYNAVFCENGSRAFETFMRHSPDLVLLDLML--PGKSGIEVCE 69 Query: 66 IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125 IR+ S VP+I ++ + + ++G DD + KP H E++AR+ A R + Sbjct: 70 QIRSSSNVPIIMLTAKSDTEDVVKGLEAGADDYIAKPFKHLELMARIRARLRPRESRQLV 129 Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 G + DGR + +G P+ E +L L+ G+ +++ ++ ++G D V Sbjct: 130 VRVGDTIMDMDGRTLKYKGAEVPMTPLEFDLLAALVRRPGQAMSRQELLETVWGYSD--V 187 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 +++V H+ +LR K + + + R +GY Sbjct: 188 SDSLVNVHVQRLRAKFTDIGAEQVIQTVRGVGYK 221 >gi|213692629|ref|YP_002323215.1| two component transcriptional regulator, winged helix family [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213524090|gb|ACJ52837.1| two component transcriptional regulator, winged helix family [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320458780|dbj|BAJ69401.1| two-component response regulator [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 240 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 41/228 (17%), Positives = 81/228 (35%), Gaps = 16/228 (7%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + +G + S R D+ ++ L LE Sbjct: 16 LVVEDEPTLATAIAQRITAEGWTARVAGDGASAVQAASQLRPDLVIMDIML--PVMDGLE 73 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA--------- 113 + I A VP++ ++ + +G DD + KP RE++AR Sbjct: 74 ATKRIVAERPVPVLILTARDDEADKVIGLGAGADDYMTKPFSMRELIARCKALLRRVERA 133 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + + + G I + R V GE L E +L L + + ++ Sbjct: 134 KVIAKNSENEKLLDFGSIVIDPAQRIVTVNGEQVHLTPTEFDLLATLARRPKSVLTREKL 193 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ D + V+SH+ LR KL + + +GY+ + Sbjct: 194 LEEVWDWVDASG-TRTVDSHVKALRHKLGADT----IRTVHGVGYAFE 236 >gi|212697066|ref|ZP_03305194.1| hypothetical protein ANHYDRO_01631 [Anaerococcus hydrogenalis DSM 7454] gi|212675841|gb|EEB35448.1| hypothetical protein ANHYDRO_01631 [Anaerococcus hydrogenalis DSM 7454] Length = 240 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 44/232 (18%), Positives = 89/232 (38%), Gaps = 13/232 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D + + + + + + S D+ ++ + Sbjct: 9 ILLIEDEKGISKIMKSYLEKEDYKVFQAFDGKEGLEIFESEDIDLVLLDLMI--PKISGE 66 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 +L + IR S VP+I ++ S ++ G DD V KP +E++ R+ + RR++ Sbjct: 67 DLIKEIRNKSNVPVIMVTAKVSEDDIVNGLKLGADDYVTKPFSPKELMQRIKTVLRRIEK 126 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFP------LPRRERRILEYLMANRGKRVAKTQIFS 175 N F L + E +I++ L +N K + +I Sbjct: 127 YNIPRADIIKTTDGRLEMDLEYNRFFKDGEEIFLTKNEFQIIKTLFSNPNKIFTREEIIE 186 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYS---IDWN 223 +G FD + +++HI +R+K+ + + + +GY ID N Sbjct: 187 ITFG-FDYDAYDRAIDTHIKNIRQKIEDNPKKPSYIKTIYGMGYKSGGIDDN 237 >gi|119476400|ref|ZP_01616751.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [marine gamma proteobacterium HTCC2143] gi|119450264|gb|EAW31499.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [marine gamma proteobacterium HTCC2143] Length = 228 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 44/221 (19%), Positives = 79/221 (35%), Gaps = 3/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQS-SAREDVSAIEAFLI-GKGEK 59 +LI+D V D G S+E E L S DV ++ L G Sbjct: 3 ILLIEDDISVADYIGKGLRQSGYSVEHCADGEQGLALAQKSEEYDVLVVDRMLPNMDGLT 62 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +++ R S V ++ + V ++ Sbjct: 63 IIQTLRAADNKSPVLILSALGEVDDRVKGLKAGGDDYLVKPFAFVELLARIEALLRRQKS 122 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S + + + + G F L RE ++LEYLM + G+ V +T + ++ Sbjct: 123 STSETKLKVADLEMDLLAHKVTRGGGGFNLQPREYKLLEYLMKHAGQVVTRTMLLENVW- 181 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + NV++ HIS+LR+K+ + + R GY + Sbjct: 182 EYHFDPQTNVIDVHISRLRQKIDKDFDQQLLSTVRGAGYML 222 >gi|38639703|ref|NP_943472.1| transcriptional regulatory protein PcoR [Klebsiella pneumoniae] gi|218697172|ref|YP_002404839.1| Transcriptional regulatory protein pcoR [Escherichia coli 55989] gi|38016801|gb|AAR07822.1| transcriptional regulatory protein PcoR [Klebsiella pneumoniae] gi|218353904|emb|CAV00324.1| Transcriptional regulatory protein pcoR [Escherichia coli 55989] gi|238549690|dbj|BAH66041.1| copper resistance two-component system response regulator [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 228 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 39/222 (17%), Positives = 94/222 (42%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D ++G + FN+ S + D+ ++ L G ++ Sbjct: 6 ILIVEDEQKTGRYLQQGLVEEGYQADLFNNGRDGLGAASKGQYDLIILDVMLPFLDGWQI 65 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119 + R + + P++ ++ +++ + + G DD + KP E++ARV + R Sbjct: 66 ISALRE--SGHEEPVLFLTAKDNVRDKVKGLELGADDYLIKPFDFTELVARVRTLLRRAR 123 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + V R G+ L +E +LE L+ G+ + ++ I S ++ Sbjct: 124 SQAATVCTIADMTVDMVRRTVIRSGKKIHLTGKEYVLLELLLQRTGEVLPRSLISSLVWN 183 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + + NV++ + +LR K+ + + + R GY ++ Sbjct: 184 M-NFDSDTNVIDVAVRRLRSKIDDDFEPKLIHTVRGAGYVLE 224 >gi|150391007|ref|YP_001321056.1| two component transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149950869|gb|ABR49397.1| two component transcriptional regulator, winged helix family [Alkaliphilus metalliredigens QYMF] Length = 232 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 45/223 (20%), Positives = 91/223 (40%), Gaps = 9/223 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++I+D + D A ++ ++ + + D ++ L E Sbjct: 9 LIIEDEKNIADVIKAYLQNEKYEAIVTHNGKEAISIFQQQSFDFVILDLML--PDLSGEE 66 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + IR SQVP++ ++ + D G DD + KP +E++ARV AI RR Sbjct: 67 ICKRIRLQSQVPILMLTAKVEESDRIYGLDIGADDYMTKPFSPKELVARVRAIMRRTNNE 126 Query: 123 NNRAETGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 +A + V + + E+ L E ++L + N GK ++ ++ + Sbjct: 127 GLKAHLIELNGGDLKVDLRDMETWKKDELVELTATEFKLLSIFIQNSGKVFSRDELVVKV 186 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G +D + ++ HI LR K+ + + + + +GY Sbjct: 187 LG-YDYVGYDRTIDVHIKNLRHKIECEY-YKYIVTVYGVGYRF 227 >gi|331271140|ref|YP_004385849.1| DNA-binding response regulator [Clostridium botulinum BKT015925] gi|329127635|gb|AEB77577.1| DNA-binding response regulator [Clostridium botulinum BKT015925] Length = 227 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 45/227 (19%), Positives = 89/227 (39%), Gaps = 10/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +G + + + D+ ++A L Sbjct: 3 ILVVDDEISILKLLKMTLQLEGHEILLAKDAIEALNIIAKNYPDIIILDAML--PDIDGF 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L I+ +P+I ++ + L G DD + KP + RE++ R+ I +R+ Sbjct: 61 NLIGKIKRIKDIPIIILTAKSDMNDKLLGLQLGADDYITKPFNSRELILRINVIKKRILK 120 Query: 122 SNNRAETGPIRVFSDGRDPEV-----QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 S + I+V P + E L +E ++L YL N G+ + ++ + Sbjct: 121 SKTNEDKKVIKVGELTLIPNEKKVLVKDESVTLTYKEFKVLNYLCENPGRVFTRDELLTK 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 ++ +D V I ++RKKL + + + LGY +D N Sbjct: 181 VW-WYDFEGTTRAVNILIQRIRKKLG--PCQNYIKTIYGLGYKLDVN 224 >gi|295093611|emb|CBK82702.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Coprococcus sp. ART55/1] Length = 228 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 47/225 (20%), Positives = 94/225 (41%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++ G G +E S + + D+ ++ L + L Sbjct: 4 ILVVEDDVIICGGVKLFLEKRGYEVETAYSCKEADGCL-EHGFDLILLDRNL--PDGRGL 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116 + R +R ++VP+I ++ + ++ F +G DD + KP + R + Sbjct: 61 DYCRELRKSTKVPIIFLTARDTEADMIEGFRAGCDDYIAKPFSVELLYQRIEAVLRRSEN 120 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 V R G + V + + E L E RILE L+ N+G+ + + I Sbjct: 121 ALDGVKRERFHYGDMSVDFERMQVYISDEPIKLSVTEYRILELLIKNKGRVLTRDMIIQK 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 I+ + V+EN + HI +LR+K+ + + V + +GY+ Sbjct: 181 IWDDNENYVDENTLNVHIRRLRQKIEKDAGNPEYVITVFGIGYTF 225 >gi|322421457|ref|YP_004200680.1| winged helix family two component transcriptional regulator [Geobacter sp. M18] gi|320127844|gb|ADW15404.1| two component transcriptional regulator, winged helix family [Geobacter sp. M18] Length = 226 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 50/222 (22%), Positives = 95/222 (42%), Gaps = 5/222 (2%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + +++DD + D +G F++ + D+ ++ L Sbjct: 4 LILIVDDEPAIVDTIQYALETEGFETLCFSTGMPVIAALAGHPADLVILDIGL--PDIGG 61 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LEL R+IR S VP+I ++ + + G DD + KP RE+ ARV A+ RR Sbjct: 62 LELCRLIRQTSSVPIIFLTARTDEIDRIVGLELGADDYITKPFSPREVSARVKAVLRRTS 121 Query: 121 VSNN-RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 N + G V R G + L R E +L+ + G ++ Q+ ++ Sbjct: 122 NPGNAMSSPGTFSVNESKRQISYFGRMLALSRYEYEMLKTFIRRPGHVFSREQLMQLVWE 181 Query: 180 LFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220 + +++ +++HI +R KL+ +P+ + R GY++ Sbjct: 182 NPECSLD-RTIDAHIKNIRAKLKKIQPDREPIVTYRGTGYAL 222 >gi|160878516|ref|YP_001557484.1| two component transcriptional regulator [Clostridium phytofermentans ISDg] gi|160427182|gb|ABX40745.1| two component transcriptional regulator, winged helix family [Clostridium phytofermentans ISDg] Length = 229 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 42/227 (18%), Positives = 91/227 (40%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + + G + S D+ ++ L G Sbjct: 4 ILVVEDDLNINNMLREALEEAGYEVVQAYSGTEAMLNVGMTEFDLILLDLML--PGMSGE 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E ++ + P+I +S L + +D G DD + KP +E+L R+ RR+ Sbjct: 62 EFLKLFNKKERTPVIVLSAKDELDSKVDVLSCGADDYITKPFQLKELLVRIEVALRRVNR 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEV--------FPLPRRERRILEYLMANRGKRVAKTQI 173 + +++ + S + L ++E +ILE L+ + K +K +I Sbjct: 122 NIEKSQDETNQCLSHKDLLLNRSSYEVRLAGNLISLTKQEYKILELLLLHPNKVFSKQEI 181 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ + + E+ + HIS +R KL+ D +D+ +G+ + Sbjct: 182 YNYAWEEY-FIGEDKTINVHISNIRMKLKKVTEDDYIDTVWGIGFKL 227 >gi|293374093|ref|ZP_06620428.1| putative regulatory protein VanR [Turicibacter sanguinis PC909] gi|292647259|gb|EFF65234.1| putative regulatory protein VanR [Turicibacter sanguinis PC909] Length = 235 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 45/231 (19%), Positives = 88/231 (38%), Gaps = 15/231 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD +++ +G+ ++ E L + + ++ + Sbjct: 7 LVVDDEREIREAIRIYLRGEGIETIMASNGEEALDLMKTNEIHLILMDVM--MPKMDGIV 64 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 +IR S VP+I ++ + G DD + KP + E++ARV + RR + Sbjct: 65 TTSLIREFSNVPIIMLTAKSEDTDKIMGLSLGADDYITKPFNPMELVARVKSQLRRYLML 124 Query: 123 NNRAETGPI-----------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 ++ R+ + V L E +IL LM N+G+ + Sbjct: 125 GAKSSNQQTTDEGTIEINGLRINLSTKQTFVDDIEVRLTPTEFKILSLLMRNKGRVFSIN 184 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 I+ ++ E N V HI K+R+K+ N + +GY I+ Sbjct: 185 DIYERVWDEPGYNAE-NTVAVHIRKIREKIEINPKEPRYLKVVWGVGYKIE 234 >gi|255973443|ref|ZP_05424029.1| two-component response regulator [Enterococcus faecalis T2] gi|256957737|ref|ZP_05561908.1| two-component response regulator [Enterococcus faecalis DS5] gi|256963145|ref|ZP_05567316.1| two-component system response regulator [Enterococcus faecalis HIP11704] gi|257080045|ref|ZP_05574406.1| two-component system response regulator [Enterococcus faecalis JH1] gi|257085734|ref|ZP_05580095.1| two-component system response regulator [Enterococcus faecalis D6] gi|294780611|ref|ZP_06745972.1| response regulator receiver domain protein [Enterococcus faecalis PC1.1] gi|307270032|ref|ZP_07551354.1| response regulator receiver domain protein [Enterococcus faecalis TX4248] gi|307272184|ref|ZP_07553444.1| response regulator receiver domain protein [Enterococcus faecalis TX0855] gi|307282378|ref|ZP_07562585.1| response regulator receiver domain protein [Enterococcus faecalis TX0860] gi|255966315|gb|EET96937.1| two-component response regulator [Enterococcus faecalis T2] gi|256948233|gb|EEU64865.1| two-component response regulator [Enterococcus faecalis DS5] gi|256953641|gb|EEU70273.1| two-component system response regulator [Enterococcus faecalis HIP11704] gi|256988075|gb|EEU75377.1| two-component system response regulator [Enterococcus faecalis JH1] gi|256993764|gb|EEU81066.1| two-component system response regulator [Enterococcus faecalis D6] gi|294452221|gb|EFG20662.1| response regulator receiver domain protein [Enterococcus faecalis PC1.1] gi|306503741|gb|EFM72968.1| response regulator receiver domain protein [Enterococcus faecalis TX0860] gi|306511073|gb|EFM80083.1| response regulator receiver domain protein [Enterococcus faecalis TX0855] gi|306513608|gb|EFM82218.1| response regulator receiver domain protein [Enterococcus faecalis TX4248] gi|315026240|gb|EFT38172.1| response regulator receiver domain protein [Enterococcus faecalis TX2137] gi|315032211|gb|EFT44143.1| response regulator receiver domain protein [Enterococcus faecalis TX0017] gi|315035425|gb|EFT47357.1| response regulator receiver domain protein [Enterococcus faecalis TX0027] gi|329574672|gb|EGG56234.1| putative transcriptional regulatory protein ResD [Enterococcus faecalis TX1467] Length = 230 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 43/226 (19%), Positives = 88/226 (38%), Gaps = 9/226 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++I+D + D + +++ + + + D+ ++ L E Sbjct: 6 LIIEDDPSIADLQKDYLEINDMTVTIEHDGKKGLEAALNEPFDLIILDVML--PTMDGFE 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120 + R IR Q P++ +S + G DD + KP E++AR A R + Sbjct: 64 ICRAIRKKKQTPIMIVSAKKEDIDKIRGLGLGADDYIIKPFSPNELVARAKAHMNRYQLL 123 Query: 121 ----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + I V + V +E ++L +LM + + K ++F + Sbjct: 124 SNAEQPPQLLKINEIAVDTAAHKVFVLENEVIFTSKEYKLLVFLMEHPNRVWNKEELFES 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221 ++G E + V HI ++R+KL+ D P+++ GY + Sbjct: 184 VWGFDALDTEVSTVVVHIKRIREKLKKANLSDSPIETLWGSGYRFN 229 >gi|227510659|ref|ZP_03940708.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227190311|gb|EEI70378.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 242 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 40/233 (17%), Positives = 93/233 (39%), Gaps = 18/233 (7%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + ++ + + + D+ ++ L E Sbjct: 5 LVVDDEPAIVTLLEYNLKQASFDVQSATNGADALSMIENNHYDIVLLDLML--PEMSGEE 62 Query: 63 LPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + I + P+I ++ + + + G DD V KP RE++AR+ A+ RR + Sbjct: 63 VLKRIRMDRNDTPVIVLTAKDTEFDKVFGLEMGADDYVPKPFSPREVIARINAVLRRYEK 122 Query: 122 SNNRAETG-------------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 S ++ P + V + L +E +++YL+ + + + Sbjct: 123 SEPSSQQNAAPVKSGDIETTGPFTIDHKQYKVSVNDQNLKLTPKEFELMQYLVGHENQVL 182 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++ Q+ ++G FD + + +V+ I+ LR+K+ + + + R GY Sbjct: 183 SRDQLLQGVWG-FDYSGQSRMVDIQIAHLREKIESDPKRPKYLKTIRGFGYEF 234 >gi|225390210|ref|ZP_03759934.1| hypothetical protein CLOSTASPAR_03960 [Clostridium asparagiforme DSM 15981] gi|225043721|gb|EEG53967.1| hypothetical protein CLOSTASPAR_03960 [Clostridium asparagiforme DSM 15981] Length = 228 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 43/220 (19%), Positives = 90/220 (40%), Gaps = 3/220 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 L++D + I L +G S+ + + R D++ ++ L+ Sbjct: 4 IFLVEDDEAIARNLIRLLRAEGFSVTHALTRGKAHETLAGDRFDLALVDISLL--DGNGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + I+ + +P+I ++ + + F G DD V KP RE++AR+ A R+ Sbjct: 62 AVCTEIKENGDIPVIFLTASDDEASVVTGFHMGADDYVTKPFRPRELVARIRAALRKSGR 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 S + + V + + G L E R+L + N + + ++ ++ Sbjct: 122 SGAVFKISGLSVDTASGVVKKNGGDVFLSALEYRLLLVFVNNPKMILTRGRLLDELWDAA 181 Query: 182 DEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220 E V +N + +I +LR+K+ + + + R GY + Sbjct: 182 GEYVNDNTLTVYIKRLREKIEEDPANPQIILTVRGTGYRL 221 >gi|126432768|ref|YP_001068459.1| two component transcriptional regulator [Mycobacterium sp. JLS] gi|126232568|gb|ABN95968.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. JLS] Length = 243 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 47/222 (21%), Positives = 95/222 (42%), Gaps = 7/222 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61 +++DD V+ G + + + L S+ D ++ + G V+ Sbjct: 21 LMVDDDPDVRTSVARGLRHSGFDVRVAANGKEALRLLSAESHDALVLDVQMPELDGVAVV 80 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 R + + +P+ +S ++ + ++G DD + KP E++AR+ Sbjct: 81 TALRALG--NDIPICVLSARDTVNDRIAGLEAGADDYLTKPFDLGELVARLHALLRRAHH 138 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++ GP+ + + R V GE L +RE +L L N G +++ ++ ++ Sbjct: 139 SDRPSDTMTVGPLTIDTARRLVFVDGERVDLTKREFDLLAVLAENNGVVLSRQRLLELVW 198 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G +D V+ NV + IS LR+KL + + R +GY + Sbjct: 199 G-YDFDVDTNVADVFISYLRRKLERDGLPRVIHTVRGIGYVL 239 >gi|108797145|ref|YP_637342.1| two component transcriptional regulator [Mycobacterium sp. MCS] gi|119866230|ref|YP_936182.1| two component transcriptional regulator [Mycobacterium sp. KMS] gi|108767564|gb|ABG06286.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. MCS] gi|119692319|gb|ABL89392.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. KMS] Length = 243 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 47/222 (21%), Positives = 95/222 (42%), Gaps = 7/222 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61 +++DD V+ G + + + L S+ D ++ + G V+ Sbjct: 21 LMVDDDPDVRTSVARGLRHSGFDVRVAANGKEALRLLSAESHDALVLDVQMPELDGVAVV 80 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 R + + +P+ +S ++ + ++G DD + KP E++AR+ Sbjct: 81 TALRALG--NDIPICVLSARDTVNDRIAGLEAGADDYLTKPFDLGELVARLHALLRRAHH 138 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++ GP+ + + R V GE L +RE +L L N G +++ ++ ++ Sbjct: 139 SDRPSDTMTVGPLTIDTARRLVFVDGERVDLTKREFDLLAVLAENNGVVLSRQRLLELVW 198 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G +D V+ NV + IS LR+KL + + R +GY + Sbjct: 199 G-YDFDVDTNVADVFISYLRRKLERDGLPRVIHTVRGIGYVL 239 >gi|116513986|ref|YP_812892.1| DNA-binding response regulator [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|116093301|gb|ABJ58454.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|325125674|gb|ADY85004.1| Response regulator receiver:Transcriptional regulatory protein, C terminal precursor [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 225 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 45/220 (20%), Positives = 91/220 (41%), Gaps = 5/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++D +++ + + GF + ++R D+ ++ L G ++ Sbjct: 4 IWCVEDDESIREIEMYTLESMNFKVRGFEDGQSFFKALDNSRPDLVILDLMLPDEDGSEI 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119 L R A +P+I S + + DSG DD + KP E+++RV A+ R Sbjct: 64 LHRLRSTSATEDLPVIIASAKTAEYDKVKNLDSGADDYLTKPFGMMEMVSRVKAVLRRTN 123 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + ++ E I++ + G L +E +L+ L+ + G ++ +I I+ Sbjct: 124 RKKEDKIEKDGIKILLKRHEVFENGHQVDLTLKEYGLLKLLITHPGTVFSREEIMDQIW- 182 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 E V+ H+ LR+KL +++ R +GY Sbjct: 183 ETGFYGETRTVDVHVRTLRQKLGEAG--KHIETVRGVGYR 220 >gi|313900334|ref|ZP_07833828.1| putative sensory transduction protein RegX3 [Clostridium sp. HGF2] gi|312954883|gb|EFR36557.1| putative sensory transduction protein RegX3 [Clostridium sp. HGF2] Length = 225 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 41/224 (18%), Positives = 81/224 (36%), Gaps = 6/224 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + ++ DG + S E + + ++ L Sbjct: 4 ILLVEDHRELAQLIVSFLKRDGFQVHHVESGEAALSYLAQTEVRLLLLDIML--PHMDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV--NKPIHHREILARVAAIYRRL 119 + + +R H VP++ +S L+ ++ G DD + R Sbjct: 62 TVCKKVREHKAVPILIMSARKDRNDQLNGYELGADDYIEKPVDPQILAAKIRAVLQRTSD 121 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + V G + L +E +L L++N GK + K IF++I+G Sbjct: 122 LHRKETISCCGVVIERAQHRAFVDGNLMELNAKEFELLTLLVSNAGKTLRKEYIFASIWG 181 Query: 180 LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 + D E+ + HI LR K+ N + + +GY + Sbjct: 182 M-DSFSEQQTLTVHIKMLRDKIEKNPKQPQRIKTVWGVGYRFEE 224 >gi|284046821|ref|YP_003397161.1| two component transcriptional regulator [Conexibacter woesei DSM 14684] gi|283951042|gb|ADB53786.1| two component transcriptional regulator, winged helix family [Conexibacter woesei DSM 14684] Length = 235 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 39/221 (17%), Positives = 83/221 (37%), Gaps = 7/221 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D V+ L G S+ + L SA D+ ++ + Sbjct: 7 LVVEDEDDVRRLVRVLLERAGHSVSEAGNGIEALRLLKSATPDLIVLDV--TMPELDGWQ 64 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRRL 119 IR ++VP++ ++ + SG DD V KP +E + + Sbjct: 65 TLERIRDLTEVPVLMLTARAGELDKVRGLKSGADDYVTKPFGRQELLARVEALLRRTSGP 124 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + V R+ V G L E ++L + + + +A+ ++ ++G Sbjct: 125 PEVRPAYRDAIVMVDYVSREVTVAGRPVQLTPLEFKLLSAFVRHPNETLARDRLLELVWG 184 Query: 180 LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219 + + V+ ++ LR+KL + P+++ R GY Sbjct: 185 DTEGFGGDQ-VKLYVGYLRRKLGWDAAAPSPIETVRGFGYR 224 >gi|237786491|ref|YP_002907196.1| two-component system response regulator [Corynebacterium kroppenstedtii DSM 44385] gi|237759403|gb|ACR18653.1| two-component system, response regulator [Corynebacterium kroppenstedtii DSM 44385] Length = 268 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 46/224 (20%), Positives = 83/224 (37%), Gaps = 10/224 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + G ++ DV ++ L LE Sbjct: 44 LVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGL--PELDGLE 101 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR S ++ ++ S + G DD + KP RE++ RV A+ RR + S Sbjct: 102 VCRRIRTFSDCYILMLTARGSEDDKICGLTLGADDYITKPFSIRELVTRVHAVLRRPRTS 161 Query: 123 NNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + V L R E +L L G+ + + + + Sbjct: 162 TTPPQVTTPLIVGDLILDPVAHQVRVGETTVELTRTEFELLVALALRPGQVLTRHDLVTE 221 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYS 219 ++ +E +V+ HI LR+KL G +D+ R +GY Sbjct: 222 VWDTT-WVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGYR 264 >gi|229014759|ref|ZP_04171862.1| DNA-binding response regulator [Bacillus mycoides DSM 2048] gi|228746525|gb|EEL96425.1| DNA-binding response regulator [Bacillus mycoides DSM 2048] Length = 225 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 44/226 (19%), Positives = 92/226 (40%), Gaps = 12/226 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +++ +G + + + DV ++ L Sbjct: 5 ILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERW-NEQPDVLILDVML--PDTDGY 61 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL R+ R +P++ ++ + L G DD V KP ++ E++ RV + RR++ Sbjct: 62 ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMSRRVR 121 Query: 121 VSNNRAETGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + IR + R V G+ L RE + + ++N + + ++ Sbjct: 122 KEEVSSTHEVIRAGELVICPKERKVHVSGQEIQLTYREFNLCQLFVSNPQRVFMRDELLE 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G F+ V+ + +LRKKL N + + +GY +D Sbjct: 182 KVWG-FEYIGNTRAVDIMVQRLRKKLGNSGEH--IKTIYGVGYKLD 224 >gi|187778087|ref|ZP_02994560.1| hypothetical protein CLOSPO_01679 [Clostridium sporogenes ATCC 15579] gi|187775015|gb|EDU38817.1| hypothetical protein CLOSPO_01679 [Clostridium sporogenes ATCC 15579] Length = 240 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 45/227 (19%), Positives = 93/227 (40%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 ++IDD + + +G + +LE + D+ ++ L + Sbjct: 11 ILIIDDEEDIVRLIRTVLKKEGFQNIYYATNLEDGLKEFNKVEPDILILDVML--PDGEG 68 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI------HHREILARVAA 114 EL + IRA S+VP++ +S + F G DD + KP + + R + Sbjct: 69 YELCKTIRAKSKVPILFLSAKGEEIDKILGFAIGGDDYITKPFSTKELAYRVKAHLRRYS 128 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 +K N GP + + + GE+ L +E ++ + + + ++K +I Sbjct: 129 YVDEVKEEKNILSFGPFELNISKAEFKRDGEIIELKPKELALITFFAKHPNQIISKEKIC 188 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++G D +N + HI +LR+K+ + + + + LGY + Sbjct: 189 DNVWGE-DYYGFDNTIMVHIRRLREKIEKEPSRPEYLINVKGLGYKL 234 >gi|83717734|ref|YP_439572.1| DNA-binding response regulator IrlR [Burkholderia thailandensis E264] gi|167577990|ref|ZP_02370864.1| DNA-binding response regulator IrlR [Burkholderia thailandensis TXDOH] gi|167616115|ref|ZP_02384750.1| DNA-binding response regulator IrlR [Burkholderia thailandensis Bt4] gi|257142704|ref|ZP_05590966.1| DNA-binding response regulator IrlR [Burkholderia thailandensis E264] gi|83651559|gb|ABC35623.1| DNA-binding response regulator IrlR [Burkholderia thailandensis E264] Length = 229 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 41/222 (18%), Positives = 88/222 (39%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + G + + D+ ++ L G Sbjct: 3 ILIVEDEPKTGMYLRKGLTEAGFIADWVEDGVTGLHQAETEEYDLIILDVML--PGHDGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120 + +R P++ ++ + + + G DD V KP E++ARV +I R Sbjct: 61 TVLERLRRERSTPVLFLTARDDVGDRVKGLELGADDYVVKPFDFVELVARVRSILRRGQG 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + + + R QG+V L +E +L LM G+ + + I S ++ + Sbjct: 121 RESTILKIADLELDLTRRKATRQGDVVLLTAKEFALLWLLMRREGEILPRATIASQVWDM 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + + NVV++ I +LR K+ + + + R +GY ++ Sbjct: 181 -NFNSDTNVVDAAIRRLRSKIDDAYEPKLIHTVRGMGYVLEV 221 >gi|217076252|ref|YP_002333968.1| phosphate regulon transcriptional regulatory protein PhoB [Thermosipho africanus TCF52B] gi|217036105|gb|ACJ74627.1| phosphate regulon transcriptional regulatory protein PhoB [Thermosipho africanus TCF52B] Length = 222 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 49/220 (22%), Positives = 98/220 (44%), Gaps = 7/220 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D +++ G ++ S+ + + D+ ++ L G + Sbjct: 4 ILIVEDDLSIRNILKKYLKSHGYEVDEAGSIVDFRKKLYNDKFDLVLLDIMLP-DGFSIN 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ELP I + +I IS S + + G DD V KP + RE++AR+ + +RR+ Sbjct: 63 ELPDIKVNFPDLGVIIISARDSDNDKIYGLEIGADDYVAKPFNPREVVARIKSYFRRVSK 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 +N + GP+ +F + ++ + +E +L L N ++ +I ++ Sbjct: 123 NNEYIKYGPLEIFCENYVVKLNNNEVEMTAKEFEVLCLLAKNPDYVFSREKILDTVW--E 180 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 DE + + VV+ HIS +R KL G + + R GY + Sbjct: 181 DEFISDRVVDVHISNIRNKL----GKSWIKTIRGAGYKFN 216 >gi|139438314|ref|ZP_01771867.1| Hypothetical protein COLAER_00856 [Collinsella aerofaciens ATCC 25986] gi|133776511|gb|EBA40331.1| Hypothetical protein COLAER_00856 [Collinsella aerofaciens ATCC 25986] Length = 250 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 46/226 (20%), Positives = 88/226 (38%), Gaps = 11/226 (4%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 M ++D ++D + G+ EGF+ + + D ++ L Sbjct: 9 MIYYVEDDDNIRDLTVYALRKQGIEAEGFSCDGEFKAAVARRVPDAVLLDIML--PDTDG 66 Query: 61 LELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 L + R +RA VP++ ++ + + D G DD + KP E+ +R A+ R Sbjct: 67 LAIMRRLRADRLTATVPIMMLTAKDTELDKVMALDGGADDYLTKPFSLMELASRCRALLR 126 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFP---LPRRERRILEYLMANRGKRVAKTQIF 174 R + ++ + L RE +LEYLM G + + Sbjct: 127 RGGMVKQASDVLSVGDIVLSPSHREVTVAGESLKLTLREFDLLEYLMRKPGVVFTRESLL 186 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +++G +D V+ H+ LR+KL +++ R +GY + Sbjct: 187 QSVWG-WDFDGGSRTVDVHVQTLRQKLGEHASA--IETVRGVGYRL 229 >gi|19554154|ref|NP_602156.1| two-component system, response regulator [Corynebacterium glutamicum ATCC 13032] gi|62391809|ref|YP_227211.1| two component response regulator [Corynebacterium glutamicum ATCC 13032] gi|41327151|emb|CAF20995.1| putative two component response regulator [Corynebacterium glutamicum ATCC 13032] Length = 240 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 46/224 (20%), Positives = 83/224 (37%), Gaps = 10/224 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + G ++ DV ++ L LE Sbjct: 16 LVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGL--PELDGLE 73 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR S ++ ++ S + G DD + KP RE++ RV A+ RR + S Sbjct: 74 VCRRIRTFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRRPRTS 133 Query: 123 NNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + V L R E +L L G+ + + + + Sbjct: 134 TTPPQVTTPLIVGDLILDPVAHQVWVGETTVELTRTEFELLVALALRPGQVLTRHDLITE 193 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYS 219 ++ +E +V+ HI LR+KL G +D+ R +GY Sbjct: 194 VWDTT-WVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGYR 236 >gi|88797980|ref|ZP_01113567.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Reinekea sp. MED297] gi|88779177|gb|EAR10365.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Reinekea sp. MED297] Length = 225 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 62/222 (27%), Positives = 109/222 (49%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + + A F +G +++ S + +L A D + I+ L L Sbjct: 3 LLIIEDEQSLLEHLQAGFKKEGFAVDTSTSGKEGLFLGKEADYDAAIIDLGL--PELDGL 60 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119 ++ R +RA Q P+I ++ + +D +SG DD + KP E+LARV A+ R + Sbjct: 61 DVIRELRAAGQDYPIIVLTARGHWRDKVDGLESGADDYLAKPFIFDELLARVKALLRRSV 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++++ G + + + V G L E LEYLM ++ K V+KT++ +Y Sbjct: 121 GMASSTLTIGLYELDTSAKSVRVDGRSVELTSYEYNTLEYLMTHKNKVVSKTELTEHLY- 179 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D + NV+E I +LRKKL +P+ ++R LGY + Sbjct: 180 EQDYDRDSNVIEVFIRRLRKKLDPDGERNPILTQRGLGYRFN 221 >gi|332687247|ref|YP_004457021.1| phosphate regulon transcriptional regulatory protein PhoB [Melissococcus plutonius ATCC 35311] gi|332371256|dbj|BAK22212.1| phosphate regulon transcriptional regulatory protein PhoB [Melissococcus plutonius ATCC 35311] Length = 229 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 45/227 (19%), Positives = 89/227 (39%), Gaps = 9/227 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + ++G + + + D+ I ++ + Sbjct: 3 ILIVDDDKEIVELLSIYIHNEGYDVVKAYDGKNALNKVHTI-PDIDLIILDIMMPEMDGM 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + +R SQ+P+I ++ + + +G DD V KP + E++ARV +I RR + Sbjct: 62 QVVKKLRKESQIPIILLTAKTTDMDKIKGLVAGADDYVTKPFNPLEVMARVKSILRRSNI 121 Query: 122 SNNRAET------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 E I + G+ L E IL L ++ + +IF Sbjct: 122 KPTTNEPAILEVGTLIINKDSHEVKTIDGKEIQLTALEFGILYLLSSHPNHVFSADEIFE 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 ++ + V V H+S LR K+ G + + +GY ID Sbjct: 182 RVW-QQESIVSAKTVMVHVSHLRDKIEEATNGEKVIQTVWGVGYKID 227 >gi|237803521|ref|ZP_04591106.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331025503|gb|EGI05559.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 282 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 49/225 (21%), Positives = 93/225 (41%), Gaps = 9/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD +++ ++ G S+ DV ++ L GE L Sbjct: 56 LIVDDDVAIRELLCDYLTRFNINARGVTDGAQMRQALSNETFDVVVLDLML--PGEDGLS 113 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R +R+ S +P++ ++ + + G DD + KP RE++AR+ I RR++ Sbjct: 114 LCRWLRSTSDIPILMLTARCEPTDRIIGLELGADDYMAKPFEPRELVARIQTILRRVRDE 173 Query: 123 NNRAETGPIRVFSD-----GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + T + G V PL E R+L + + +++ Q+ A Sbjct: 174 RSDQRTTIRFDAWRLNSVLRQLTAADGLVVPLSNAEFRLLRVFLERPHRVLSREQLLDAA 233 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 G EA + ++ +S+LR+KL + + + R GY D Sbjct: 234 RGRSIEAFD-RSIDLLVSRLRQKLGDDPKNPQLIKTVRGEGYLFD 277 >gi|219669886|ref|YP_002460321.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219540146|gb|ACL21885.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 239 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 48/228 (21%), Positives = 83/228 (36%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +L+DD ++ + + +G + S + + L + + V ++ L Sbjct: 9 LLLVDDEPDLRGMLVEILHKEGFQRVRTAASCQQAKELFQTEQPQVVILDVSL--PDGDG 66 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-------ILARVA 113 L R+ S VP++ +S + L G DD + KP RE +L R Sbjct: 67 FSLMSEFRSISAVPVLFLSARDEDENRLLGLGLGADDYITKPFLPRELLLRLKAVLTRTY 126 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + G V + L +E +L L NRG V + Sbjct: 127 FPPTLRQSKKPLFRLGEAVVDLNSALVTRPQGQVTLTAKEYILLAKLYENRGSIVTGDSL 186 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 A++G D EN + HI +LR+K+ + + R LGY + Sbjct: 187 CRAVWG-DDLYGYENTLMVHIRRLREKIEPEPSSPRYLLTVRGLGYKL 233 >gi|330006922|ref|ZP_08305793.1| putative sensory transduction protein RegX3 [Klebsiella sp. MS 92-3] gi|328535638|gb|EGF62088.1| putative sensory transduction protein RegX3 [Klebsiella sp. MS 92-3] Length = 229 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 46/224 (20%), Positives = 91/224 (40%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 L++D + D + + +G + F + DV+ ++ L Sbjct: 6 IWLVEDEQSIADTLVYMLQQEGFQVSVFGRGLPALEAAAHQAPDVAILDVGL--PDISGF 63 Query: 62 ELPRI-IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117 EL R + + +P++ ++ L + G DD + KP RE+ ARV + Sbjct: 64 ELCRRLLTRYPALPVLFLTARSDEVDKLLGLEIGADDYIAKPFSPREVCARVRTVLRRLQ 123 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + G + G+ L R E +L+ L+ G+ ++ Q+ + Sbjct: 124 KFAAPSPVVRVGEFVLDEQAAAISWFGQPLNLTRYEFLLLKTLLHAPGRVFSRQQLMELV 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + E+++ V++HI LR KLR P+++ R +GYS+ Sbjct: 184 WSDAWESLD-RTVDTHIKTLRAKLRAVNPEKAPINTHRGMGYSL 226 >gi|327480541|gb|AEA83851.1| KDP operon transcriptional regulatory protein kdpE [Pseudomonas stutzeri DSM 4166] Length = 231 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 42/222 (18%), Positives = 89/222 (40%), Gaps = 7/222 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++IDD ++ G + + + D+ ++ L + Sbjct: 9 LIIDDEPQIRKFLRISLASQGYRVLESTDGRDGLARAALEQPDLVVLDLGL--PDMDGQD 66 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRRL 119 + +R+ ++VP+I +S S + D+G +D V KP +E LARV + + Sbjct: 67 VLGELRSWTRVPVIVLSVRSSEAEKVRALDAGANDYVTKPFGIQEFLARVRALLRLPQST 126 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S + G + + R + + L R+E +L L + G+ V + + ++G Sbjct: 127 TNSPGQVLCGALCIDLAFRRVSLGERMVSLTRKEYAVLAELARHAGRVVTQQHLLKIVWG 186 Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 A + + + I LR+KL + + ++ +GY + Sbjct: 187 PSH-AGDSHYLRVVIGHLRQKLGDDPAAPRFIVTEAGVGYRL 227 >gi|325289382|ref|YP_004265563.1| two component transcriptional regulator, winged helix family [Syntrophobotulus glycolicus DSM 8271] gi|324964783|gb|ADY55562.1| two component transcriptional regulator, winged helix family [Syntrophobotulus glycolicus DSM 8271] Length = 227 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 52/225 (23%), Positives = 95/225 (42%), Gaps = 7/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + G F DG S++ + + D+ ++ L + Sbjct: 4 ILILEDDENLSRGIAFTFEKDGYDAVSAGSIQDGKRMLEQHNIDLIILDLGL--PDGSGM 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 +L + IR +S +P+I ++ + G DD + KP + ARV A+ RR + Sbjct: 62 DLCKEIRTYSNIPIIMLTACDLETDEVSGLLVGADDYITKPFSLSVLRARVEALLRRTES 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLP--RRERRILEYLMANRGKRVAKTQIFSAIYG 179 + +GE +P E R+L +LM N G+ ++K QI S ++ Sbjct: 122 ESRHIIHSGKYKLDAELCKFFRGEEEEIPISATEYRLLSFLMTNAGQVLSKEQILSFLWD 181 Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223 V+EN + +IS+LR KL + + + +GY WN Sbjct: 182 NEGNFVDENTLPVNISRLRAKLEDDPKNPQTIKTIHGIGYI--WN 224 >gi|302538254|ref|ZP_07290596.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. C] gi|302447149|gb|EFL18965.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. C] Length = 222 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 46/220 (20%), Positives = 86/220 (39%), Gaps = 5/220 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + +G S++ + W+ D+ ++ L G Sbjct: 1 MVVEDERRLALALQRGLRSEGFSVDVAHDGPQGLWMACEHDYDLIVLDIML--PGLNGYR 58 Query: 63 LPRIIRAHSQVPLI-GISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + +RA I ++ + D+G DD ++KP + ++AR+ A+ RR Sbjct: 59 VCARLRAAGNESGILMLTAKDGEYDEAEALDTGADDFLSKPFSYLVLVARLRALGRRTGR 118 Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 R V G L RE +LE L G+ V K +I ++ Sbjct: 119 RAPRTMQFGDLLVDPARHLCSRGGTEIRLTAREFAVLECLARRAGEVVPKREILEQVWDS 178 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + NVVE H+S +R+K+ G +++ R GY + Sbjct: 179 A-FDGDPNVVEVHVSAVRRKIDAPFGRSALETVRGAGYRL 217 >gi|320160915|ref|YP_004174139.1| putative OmpR family two-component system response regulator [Anaerolinea thermophila UNI-1] gi|319994768|dbj|BAJ63539.1| putative OmpR family two-component system response regulator [Anaerolinea thermophila UNI-1] Length = 244 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 45/226 (19%), Positives = 97/226 (42%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + DG + + D+ ++ L Sbjct: 10 ILVVDDEERMVRFIRLNLEHDGFQVISAYRGYEALEKVRTEMPDLVLLDVML--PDLDGF 67 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 E+ ++IR S P+I ++ + + G DD + KP RE+++RV A+ RR++ Sbjct: 68 EVLKLIRESSNTPVIMLTAKGEEDDRVRGLELGADDYITKPFSPRELVSRVKAVLRRVEA 127 Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + +++ R+ V+G + L E R+L +L+ N G + Q+ + Sbjct: 128 TSLTAKNEIIQVDDRLKIDFGRREVWVEGNLVKLRPTEYRLLYHLVQNAGWVMTYEQLLT 187 Query: 176 AIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220 ++G ++ EE+ V +++ LR+K+ + + ++R +GY Sbjct: 188 KVWG-YEYRDEEHYVRLYVNYLRQKIEEDPSNPKYILTERGVGYRF 232 >gi|301054385|ref|YP_003792596.1| two-component response regulator [Bacillus anthracis CI] gi|300376554|gb|ADK05458.1| two-component response regulator [Bacillus cereus biovar anthracis str. CI] Length = 215 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 38/220 (17%), Positives = 95/220 (43%), Gaps = 11/220 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++ DD + A F +G + E + + D++ ++ + Sbjct: 4 LIADDEQDMLRILKAYFEKEGFEVFLAKDGEEALQIFYDKKIDLAILDWM--MPKHSGIT 61 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + I+ +S V ++ ++ + L SG D+ V KP H ++ R ++L Sbjct: 62 VCQEIKKNSSVKVLMLTAKSESEDELAALQSGADEYVKKPFHPGVLITRA----KKLIQH 117 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 ++ + +++ + + + E +++ + ++G + + ++ ++G FD Sbjct: 118 DDVIQVQDLKIDFTKNKVYKNDKELDITKTELELIKCFLNHKGMILTRKKLLDIVWG-FD 176 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 EE V++H+ +LRKK+ + + + R LGYS++ Sbjct: 177 YFGEERTVDTHVRRLRKKVGE----NIIKTHRGLGYSLEE 212 >gi|258650654|ref|YP_003199810.1| winged helix family two component transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258553879|gb|ACV76821.1| two component transcriptional regulator, winged helix family [Nakamurella multipartita DSM 44233] Length = 240 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 51/224 (22%), Positives = 96/224 (42%), Gaps = 9/224 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L++D ++ GD G + S E A DV ++ L G L Sbjct: 16 LLVEDDERIRLALGLALGDLGFQVRDAASGELALERLEVADVDVVLLDLML--PGVDGLT 73 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +RA +P+I + + ++G DD ++KP+ E+ AR+ A+ RR + Sbjct: 74 VCRTLRARGDLPIIITTARSDTADVIAGLEAGADDYMSKPLVASELAARIRALLRRRRPV 133 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVF-----PLPRRERRILEYLMANRGKRVAKTQIFSAI 177 +N ++V P L R E R+L L++ G V + ++ + Sbjct: 134 SNTTVQSYVQVADLEVWPMEGRVRRAGADVHLTRTEFRLLAELVSADGVVVTREELLHRV 193 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 +G +D + +++ HI +LR+K+ + + + R LGY Sbjct: 194 WG-YDYFGDTRLLDVHIRRLRRKVETDPDNPALITTVRGLGYRF 236 >gi|258543851|ref|ZP_05704085.1| DNA-binding heavy metal response regulator [Cardiobacterium hominis ATCC 15826] gi|258520891|gb|EEV89750.1| DNA-binding heavy metal response regulator [Cardiobacterium hominis ATCC 15826] Length = 229 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 47/226 (20%), Positives = 92/226 (40%), Gaps = 8/226 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++I+D V + G ++ ++ + S + D+ ++ L L Sbjct: 4 LIIEDDKDVAAYITKGLSESGYVVDAAHTGTEGLSMAQSGQYDILIVDRML--PELDGLS 61 Query: 63 LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118 + +R P++ +S + ++ +G DD + KP E + + Sbjct: 62 VIEKLRKDGMSTPVLILSALGEVDDRVEGLAAGGDDYLVKPYAFSELLARVQALTRRRGG 121 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 E +++ R G L RE R+LEYLM+N G+ V +T + ++ Sbjct: 122 EIQDQMMLEVADLQLDRLKRKVTRSGRKINLQPREFRLLEYLMSNAGQVVTRTMLLEKVW 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI-DWN 223 + + NV++ HIS+LR K+ + ++R GYS+ D N Sbjct: 182 -EYHFDPQTNVIDVHISRLRSKIDKDFDPPLIHTERGAGYSLYDPN 226 >gi|326203672|ref|ZP_08193535.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] gi|325986112|gb|EGD46945.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] Length = 258 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 39/221 (17%), Positives = 94/221 (42%), Gaps = 6/221 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L++D + G ++G ++ L + + D+ ++ L E Sbjct: 32 LLVEDDTTLAFGIEYTLKNEGFNVSLAVDLAEARKALHTNKLDIVLLDVRL--PDGNGFE 89 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRRL 119 + IRA S++P+I ++ + D G DD + KPI +E+++R+ Sbjct: 90 FCKEIRAVSKMPIIFLTSCNDEANVVMGLDLGADDYIPKPIRIKELISRINAVLRRNSAE 149 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + ++ I + +G+ L E ++L L+ + + +++ I ++ Sbjct: 150 ANIASIIKSNDIEINVMQGKVMKRGQEVMLTAVEYKLLLTLIEHSEQILSRNTILEHLWD 209 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYS 219 + E +++N + +I +LR+K+ + + + R +GY Sbjct: 210 IDGEFIDDNTLSVYIRRLREKIEDNASSPVNILTVRGVGYK 250 >gi|220905834|ref|YP_002481145.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 7425] gi|219862445|gb|ACL42784.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7425] Length = 253 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 48/233 (20%), Positives = 90/233 (38%), Gaps = 15/233 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIE--------AFL 53 +L++D L+++ ++G + + ++ AI+ L Sbjct: 21 ILLVEDEELIRETVSLALMEEGYEVITAADGRQALDILNARVLHSQAIDSAGLDLMILDL 80 Query: 54 IGKGEKVLELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV 112 + L+L R+IR P++ +S S + + G DD V KP RE++AR Sbjct: 81 MLPYINGLDLCRLIRREGCTLPILMLSAKGSEIDRVVGLEVGADDYVTKPFGMRELVARC 140 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQG----EVFPLPRRERRILEYLMANRGKRV 168 A+ RR + E + + L +E R+LE M+ + Sbjct: 141 RALLRRQRAQTPPPVPILKFRDLQLYPQECRVLVRGQEVNLSPKEFRMLELFMSYPRRVW 200 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + Q+ I+G D + V+ HI LR+K+ + + + + R GY Sbjct: 201 PREQLLDKIWGT-DFVGDSKTVDVHIRWLREKIELDPSHPEYLLTVRGFGYRF 252 >gi|88800403|ref|ZP_01115968.1| possible baeR; Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Reinekea sp. MED297] gi|88776850|gb|EAR08060.1| possible baeR; Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Reinekea sp. MED297] Length = 224 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 54/219 (24%), Positives = 88/219 (40%), Gaps = 4/219 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 V+++D + + G + F+ + + + D+ ++ L G L Sbjct: 4 IVIVEDERQLAELERDYLKAAGYEVTLFDRGDTAQQWLETHEPDLLVLDLML--PGLDGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL R +R S VP+I + L + G DD + KP RE++ARV I RR Sbjct: 62 ELCRNLRRRSTVPIIMTTARVEEVDRLIGLEIGADDYLCKPFSLRELVARVKVILRRTHP 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + E+ L + E R+L L + + ++ QI IY Sbjct: 122 EAAPPVSLNPILNEALAMVELGSHSVELTQVEVRLLALLQNHPRRIFSRDQIIDHIY-ED 180 Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219 V + V+SHI KLR+KL+ D + S GY Sbjct: 181 RRIVSDRTVDSHIKKLRRKLQQLSEDHDFIHSVYGAGYR 219 >gi|239941771|ref|ZP_04693708.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239988231|ref|ZP_04708895.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] gi|291445216|ref|ZP_06584606.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291348163|gb|EFE75067.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 225 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 44/223 (19%), Positives = 87/223 (39%), Gaps = 6/223 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L +D A + + +G +E D+ ++ L G LE Sbjct: 5 LLAEDDASISEPLARALRREGYEVEVRQDGPTALDAGLQGGIDLVVLDLGL--PGMDGLE 62 Query: 63 LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-HREILARVAAIYRRLK 120 + R +RA +P++ ++ T+ D+G DD V KP + A + R Sbjct: 63 VARRLRAGGHTIPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGSS 122 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + T +R+ + + E L +E +L L+ + G+ V + Q+ ++ Sbjct: 123 EPVPQPATHGVRIDVESHRAWMGEEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 182 Query: 181 FDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222 + ++ HIS LRKKL + + + R +G+ + Sbjct: 183 TWWS-STKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEK 224 >gi|198283275|ref|YP_002219596.1| winged helix family two component transcriptional regulator [Acidithiobacillus ferrooxidans ATCC 53993] gi|218665852|ref|YP_002425862.1| DNA-binding response regulator PhoB [Acidithiobacillus ferrooxidans ATCC 23270] gi|198247796|gb|ACH83389.1| two component transcriptional regulator, winged helix family [Acidithiobacillus ferrooxidans ATCC 53993] gi|218518065|gb|ACK78651.1| DNA-binding response regulator PhoB [Acidithiobacillus ferrooxidans ATCC 23270] Length = 243 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 46/220 (20%), Positives = 89/220 (40%), Gaps = 4/220 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK-GEKVL 61 ++++D +++ +G + S+E E + + + ++ L GK G Sbjct: 11 LVVEDEEGIQELLRVTLQRNGFDVRCEGSVESAEAVLQTWGPQLLVLDWMLPGKNGLAWC 70 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119 + R ++P+I ++ + +SG DD + KP RE++ARV A Sbjct: 71 RMLRRREETRKLPIILLTARGEEGDRVHGLESGADDYLAKPFSPRELVARVNALLRRSYG 130 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + R G ++V L E R+L + N + ++ + I+G Sbjct: 131 GTAAGRVRLGGLQVDLRAHRVYADEVQVHLGPTEFRLLRLFVTNPERVFSRDMLLDQIWG 190 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 VEE V+ HI +LR+ L + +++ R GY Sbjct: 191 R-QSFVEERTVDVHIRRLRRGLEHHGYAQIIETVRGEGYR 229 >gi|254188385|ref|ZP_04894896.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia pseudomallei Pasteur 52237] gi|157936064|gb|EDO91734.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia pseudomallei Pasteur 52237] Length = 235 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 45/226 (19%), Positives = 82/226 (36%), Gaps = 8/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++I+D + + G + E + L S D+ ++ L G G Sbjct: 7 ILVIEDEPAISELISVNLQHAGHCPIRAYNAEQAQSLISDVLPDLVLLDWMLPGKSGIAF 66 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILA------RVAA 114 R +P+I ++ Q + + G DD V KP +E++A R A Sbjct: 67 ARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRRRA 126 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 V + + L E R+L + M + + ++TQ+ Sbjct: 127 PQLTEDVVSINGLRLDPATHRVAAQSDGSEIKLDLGPTEFRLLHFFMTHPERVHSRTQLL 186 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G VEE V+ HI +LR L+ +++ R GY + Sbjct: 187 DQVWGDH-VFVEERTVDVHIKRLRAALKPAGCDAMIETVRGSGYRL 231 >gi|67920570|ref|ZP_00514090.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Crocosphaera watsonii WH 8501] gi|67858054|gb|EAM53293.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Crocosphaera watsonii WH 8501] Length = 246 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 47/228 (20%), Positives = 91/228 (39%), Gaps = 9/228 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++I+D ++D G ++ + L + D+ ++ L G V Sbjct: 4 ILVIEDDDAIRDLIATNLEMAGYDIKQAPDGIKGQALAVQLQPDLIMLDLMLPKVDGFTV 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R S +P++ +S Q ++ F++G DD + KP E+LARV A+ RR Sbjct: 64 CQRLRRDDRTSDIPVLMLSALGQTQDKVEGFNAGADDYLTKPFELAEMLARVRALLRRTD 123 Query: 121 VSNNRAETGPIRVF------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 A+ I + + + L E +L L+ G+ V+ ++I Sbjct: 124 RIPQAAKHSEILNYGPLTLIPERFEAICFENTVKLTHLEFELLHCLLQRHGQTVSPSEIL 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 ++G +D + + HI LR KL + + + GY ++ Sbjct: 184 KEVWG-YDPDDDIETIRVHIRHLRTKLEPDPRHPCYIKTVYGAGYCLE 230 >gi|327470525|gb|EGF15981.1| DNA-binding response regulator [Streptococcus sanguinis SK330] Length = 238 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 40/220 (18%), Positives = 85/220 (38%), Gaps = 6/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D +++ + G + + + ++ L Sbjct: 14 ILLVEDDPVIRQMVKKMLEQWGFQVVAVEDFMDVLAVFVREEPHLVLMDIGLPL--FNGY 71 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 + IR S VP++ +S + + G DD V KP + LA+V Sbjct: 72 HWCQEIRKISTVPIMFLSSRDQSMDIVMAINMGADDYVTKPFDNNVFLAKVQGLLRRSYE 131 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + E + + D G+V L + E +IL L + VA+ + ++ Sbjct: 132 FGNDQSLLEHQGVILNLKSTDLVFDGKVVTLTKNEFQILRVLFEHSDGIVARDDLMKELW 191 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 D +++N + ++++LRKKL + +++K+ +GY Sbjct: 192 -NSDFFIDDNTLSVNVARLRKKLEEHGLKNFIETKKGIGY 230 >gi|255099493|ref|ZP_05328470.1| two-component response regulator [Clostridium difficile QCD-63q42] Length = 233 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 46/228 (20%), Positives = 93/228 (40%), Gaps = 9/228 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++IDD + + +S + L R +S + ++ + Sbjct: 5 LIIDDDKELCALMKKCVEQENLSAITAHCGAEGLHLVDKNRHTLSLVILDIMMPDIDGFQ 64 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121 + + IR S +P+I ++ + G DD + KP E++ARV ++ RR + Sbjct: 65 VLKKIRETSNIPVIMLTAKNDEDDKVSGLRLGADDYLTKPFSINELMARVNSLIRRYTML 124 Query: 122 ------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + + R V L +E +L +L +N+G+ K QI++ Sbjct: 125 NPAFITDTDCIIINGMIIDKTNRIVSVNNIPVQLTSKEFDLLAFLASNKGRVFTKKQIYT 184 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDW 222 ++ + A +++ + S ISKLRKK+ + + R +GY + Sbjct: 185 QVW-EEEYAFDDSNIMSFISKLRKKIEPDPNHPFYILTVRGVGYRFNK 231 >gi|196042000|ref|ZP_03109286.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|196027134|gb|EDX65755.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] Length = 215 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 37/220 (16%), Positives = 94/220 (42%), Gaps = 11/220 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++ DD + A F +G + E + + D++ ++ + Sbjct: 4 LIADDEQDMLRILKAYFEKEGFEVFLAKDGEEALQIFYDEKIDLAILDWM--MPKHSGIT 61 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + I+ +S V ++ ++ + L SG D+ V K H ++ R ++L Sbjct: 62 VCQEIKKNSSVKVLMLTAKSESEDELAALQSGADEYVKKTFHPGVLITRA----KKLIQH 117 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 ++ + +++ + + + E +++ + ++G + + ++ ++G FD Sbjct: 118 DDVIQVQDLKIDFTKNKVYKNDKELDITKTELELIKCFLNHKGMILTRKKLLDIVWG-FD 176 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 EE V++H+ +LRKK+ + + + R LGYS++ Sbjct: 177 YFGEERTVDTHVRRLRKKVGE----NIIKTHRGLGYSLEE 212 >gi|330504485|ref|YP_004381354.1| DNA-binding response regulator [Pseudomonas mendocina NK-01] gi|328918771|gb|AEB59602.1| DNA-binding response regulator [Pseudomonas mendocina NK-01] Length = 218 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 51/223 (22%), Positives = 103/223 (46%), Gaps = 9/223 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + +G +G +++ S +++ ++ L L Sbjct: 3 ILLVEDDQALGEGIRTALKPEGYTVDWLQDGASALHALSHESFELAILDLGL--PRMDGL 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119 ++ + ++A + P++ ++ + + D+G DD + KP E+ AR+ A + R Sbjct: 61 QVLKHLQAAANPVPVLVLTARDATSDRIAGLDAGADDYLIKPFDVAELKARLRALLRRSF 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + E IR+ + E QG+ LPR+E +L L+ G+ + + ++ A+YG Sbjct: 121 QRPQPALEYRGIRLDPASQVVEYQGQTINLPRKEFLLLHELLIQPGRVLTRDKLQQALYG 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +DE VE N +E H+ LRKK + + + R +GY +D Sbjct: 181 -WDEEVESNALEVHVHHLRKK----FFPELIRTVRGVGYLVDK 218 >gi|309700427|emb|CBI99718.1| DNA-binding response regulator transcriptional regulator [Escherichia coli ETEC H10407] Length = 226 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 37/223 (16%), Positives = 98/223 (43%), Gaps = 6/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G ++ ++ L +A D+ ++ L Sbjct: 3 ILIVEDEIKTGEYLSKGLTEAGFVVDHADNGLTGYHLAMTAEYDLVILDIML--PDVNGW 60 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118 ++ R++R A P++ ++ +++ + + G DD + KP E+LARV Sbjct: 61 DIIRMLRTAGKGTPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGN 120 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++ ++ + + + R G L +E +LE+ + ++G+ + ++ I S ++ Sbjct: 121 TMITESQFKVADLSIDLVSRKVSRAGNRIVLTSKEFSLLEFFIRHQGEVLPRSLIASQVW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + + N ++ + +LR K+ N + + R +GY ++ Sbjct: 181 DM-NFDSDTNAIDVAVKRLRAKIDNDYETKLIQTVRGVGYMLE 222 >gi|225026361|ref|ZP_03715553.1| hypothetical protein EUBHAL_00610 [Eubacterium hallii DSM 3353] gi|224956301|gb|EEG37510.1| hypothetical protein EUBHAL_00610 [Eubacterium hallii DSM 3353] Length = 233 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 39/225 (17%), Positives = 91/225 (40%), Gaps = 6/225 (2%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 M + I+D ++ + ++ +E + + L S D+ ++ L Sbjct: 1 MILFIEDDIMLSEEISEFLKENDFEVEVVGNGDDALKLLQSRIYDLCILDIGL--PDCSG 58 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH----HREILARVAAIY 116 L + IR + P+I + Y + + + +G DD V KP I +++ Sbjct: 59 FLLCKKIRQFYRNPIIIFTAYENEEDIVTGLMAGADDYVTKPCSLRVLRSRIFSQLRRKQ 118 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 ++ +G + + +G + E R+ L+ N G+ + + + Sbjct: 119 WSEEIETEIIRSGDLVIDVVHNMIFKKGRELSIKDTEFRLCYMLVRNDGRIMPRELLLER 178 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ + + +E N + ++S+LRKKL G +++ + +GY + Sbjct: 179 LWDMDEHFIENNTLSVYVSRLRKKLGVYNGVSYIETIKGIGYRWN 223 >gi|170690170|ref|ZP_02881337.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia graminis C4D1M] gi|170144605|gb|EDT12766.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia graminis C4D1M] Length = 223 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 44/221 (19%), Positives = 98/221 (44%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + + +++ ++ +L D+ ++ L G Sbjct: 3 ILIIEDEPKMAAYLRKGLVEASFTVDTADNGVNGLFLALHEEFDLIVLDVML--PGIDGF 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL R +R Q P++ ++ ++ ++ + G DD ++KP + E LAR+ ++ RR Sbjct: 61 ELLRRLRKEKQTPVLLLTARDTVADKVEGLELGADDYLSKPFAYAEFLARIRSLLRRAPR 120 Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + V R + L +E +L+ L +G+ + +T I S I+ + Sbjct: 121 AVKDVLRIADMEVDFIKRRVKRGDLRIDLTAQEFSLLQLLAERQGEVLTRTFITSQIWDM 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + NVV++ + +LR K+ N + + R +GY ++ Sbjct: 181 -NFDSDTNVVDAAVKRLRAKIDNSFETKLLHTVRGMGYVLE 220 >gi|119385327|ref|YP_916383.1| two component transcriptional regulator [Paracoccus denitrificans PD1222] gi|119375094|gb|ABL70687.1| two component transcriptional regulator, winged helix family [Paracoccus denitrificans PD1222] Length = 239 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 43/227 (18%), Positives = 88/227 (38%), Gaps = 10/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ + + L D+ ++ GE Sbjct: 12 ILVVDDDERIRSLLRRFLMRNDFLVTTARDAAHARRLLDGLDFDLIVLDVM--MPGEDGF 69 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R +R P++ ++ ++ F+SG DD + KP RE+L R+AAI RR+ Sbjct: 70 TLTRDLRKRMTTPILLLTAKGETGDRIEGFESGADDYLPKPFEPRELLLRIAAILRRMPT 129 Query: 122 SNNRAETG----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + P+R +D + L E+ +L L + V+++ + + Sbjct: 130 AEAKGPKFLSLGPLRYDADKGELWQGDAPLRLTGTEQALLRRLADTPRQPVSRSTLIEDL 189 Query: 178 YGLFDEAV---EENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 E E ++ I++LR+K+ + + + R GY + Sbjct: 190 GRSHSEEAGENSERAIDVQITRLRRKIEPDPKEPRYLQTVRGTGYML 236 >gi|255523201|ref|ZP_05390172.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296186167|ref|ZP_06854572.1| putative regulatory protein VanR [Clostridium carboxidivorans P7] gi|255513069|gb|EET89338.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296049435|gb|EFG88864.1| putative regulatory protein VanR [Clostridium carboxidivorans P7] Length = 231 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 51/227 (22%), Positives = 94/227 (41%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + L G + S + + ++ L G Sbjct: 7 ILIVEDDNGINTLLARLMEKKGYGVVQAYSGTEAMLHIEAKDFQLVILDLML--PGITGE 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL + IR Q+P+I IS + ++ + G DD + KP E+ ARV + RR Sbjct: 65 ELIKNIRKTKQMPVIVISAKIDKKDKIELLNLGADDYITKPFDIEEVCARVYSNLRRYMK 124 Query: 122 SNNRAE-------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 +N I + + ++ V G+ RE ILE L+ + K +K +F Sbjct: 125 FSNNNVSVNENLTYKDIVLNKETKEVCVNGKNITFTAREFEILELLLTHPKKVFSKANLF 184 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220 +++G + ++N V H+S LR KL + + +++ +GY I Sbjct: 185 ESVWGE-EYLGDDNTVNVHMSNLRSKLQKANPKEEYIETIWGMGYKI 230 >gi|225849099|ref|YP_002729263.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Sulfurihydrogenibium azorense Az-Fu1] gi|225644594|gb|ACN99644.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Sulfurihydrogenibium azorense Az-Fu1] Length = 228 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 39/227 (17%), Positives = 92/227 (40%), Gaps = 9/227 (3%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEK 59 + +I+D + + F +G ++ F + + + D ++ + G + Sbjct: 3 LIYVIEDDEDINELLTYNFKKEGFEVKSFPNGKVAFEHIKEDKPDAVVLDLMMPEIDGLE 62 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-----ILARVAA 114 +L R + S PLI ++ + + + G DD V KP RE + Sbjct: 63 FCKLVRSDKEISHTPLIMLTAKSTEIDKIVGLELGADDYVTKPFSFRELLARVKAVIRRS 122 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 S + + + + + + ++G+ L + ++L L+ G+ +++ I Sbjct: 123 KSYHFPTSKPKYKFKDLEIIPEKFEVTIKGQHINLTITQFKLLLALVNAEGRVLSRDYIL 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 I+ +D+ + + ++ HI KLR+ L + + + R +GY + Sbjct: 183 ENIW-KWDKDIYDRTIDVHIKKLREVLGDYGN--CIKTVRGVGYKWE 226 >gi|26986792|ref|NP_742217.1| DNA-binding heavy metal response regulator, putative [Pseudomonas putida KT2440] gi|148545318|ref|YP_001265420.1| two component heavy metal response transcriptional regulator [Pseudomonas putida F1] gi|167031082|ref|YP_001666313.1| two component heavy metal response transcriptional regulator [Pseudomonas putida GB-1] gi|170719251|ref|YP_001746939.1| two component heavy metal response transcriptional regulator [Pseudomonas putida W619] gi|325272074|ref|ZP_08138510.1| two component heavy metal response transcriptional regulator [Pseudomonas sp. TJI-51] gi|24981387|gb|AAN65681.1|AE016195_2 DNA-binding heavy metal response regulator, putative [Pseudomonas putida KT2440] gi|148509376|gb|ABQ76236.1| two component transcriptional regulator, winged helix family [Pseudomonas putida F1] gi|166857570|gb|ABY95977.1| two component heavy metal response transcriptional regulator, winged helix family [Pseudomonas putida GB-1] gi|169757254|gb|ACA70570.1| two component heavy metal response transcriptional regulator, winged helix family [Pseudomonas putida W619] gi|324102770|gb|EGC00181.1| two component heavy metal response transcriptional regulator [Pseudomonas sp. TJI-51] Length = 224 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 38/222 (17%), Positives = 82/222 (36%), Gaps = 2/222 (0%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++I+D + + G ++ ++ +L ++ ++ L G +V Sbjct: 3 ILVIEDEVKTAEYVRQGLTECGYVVDCVHTGSDGLFLAKQHEYELIILDINLPEMDGWQV 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LEL R S++ ++ + + + + R Sbjct: 63 LELLRRKNCPSRIMMLTARSRLADKVRGLENGADDYLIKPFEFPELLARVRALMRRSDHP 122 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 S + + G+ L +E +L YLM N G +++TQI S ++ + Sbjct: 123 ASVEVIRVADLELDQSRHRAFRDGQRIDLTTKEFALLHYLMRNTGVVLSRTQIISQVWDM 182 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + + NVVE I +LR K+ + + + R +GY ++ Sbjct: 183 -NFDCDTNVVEVSIRRLRAKIDDPFETKLIHTLRGVGYVLEK 223 >gi|309789889|ref|ZP_07684467.1| transcriptional regulator [Oscillochloris trichoides DG6] gi|308228096|gb|EFO81746.1| transcriptional regulator [Oscillochloris trichoides DG6] Length = 234 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 41/224 (18%), Positives = 77/224 (34%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + G + + R +V ++ L L Sbjct: 5 ILVVDDEPQMGRLLRTGLSARGYEVVVAADGQEALEQAVHWRPEVIVLDLGL--PVMDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117 E+ R IR SQVP+I +S ++ D G DD + KP I + Sbjct: 63 EVCRRIRGWSQVPIIVLSARDGEPDKVEALDLGADDYLVKPFGMDELLARIRVALRHSSH 122 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 G +++ R ++G L E +L + GK + I + Sbjct: 123 IQANDEPVLHFGELQIDRSRRIVTLKGHEVHLTPTEYELLRLFTNHVGKVLTHRMILRTV 182 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220 +G + E + I++LR+K+ + ++ +GY Sbjct: 183 WGA-NYEQELPTLRVFITQLRRKIEPDPAQPMYILTEPGIGYRF 225 >gi|307325774|ref|ZP_07604974.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] gi|306888562|gb|EFN19548.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] Length = 225 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 46/220 (20%), Positives = 91/220 (41%), Gaps = 5/220 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D ++ + +G +++ + D ++ L + Sbjct: 4 LVVEDHPMLGRALVHGLTTEGFAVDLATDGAEGLYRVGETPYDAIVLDIML--PRVNGYD 61 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120 + R +RA P++ ++ D D G DD + KP + + AR+ A I R Sbjct: 62 VCRRLRAAKDWTPVLMLTAKDGEYDEADGLDIGADDYLTKPFSYVVLTARLHALIRRGHI 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 G + + GR G L RE +LEYL+ + G+ V+K +I + ++ Sbjct: 122 PRPPVLSVGDLLLDPGGRTCVRAGTPIELTTREFSLLEYLVRHEGQVVSKQEILTHVWAE 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ NVVE +I LR+K+ +++ R GY + Sbjct: 182 H-FDLDPNVVEVYIGYLRRKIDTPFRVRSIETVRGAGYRL 220 >gi|288555603|ref|YP_003427538.1| DNA-binding response regulator [Bacillus pseudofirmus OF4] gi|288546763|gb|ADC50646.1| DNA-binding response regulator [Bacillus pseudofirmus OF4] Length = 226 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 42/221 (19%), Positives = 92/221 (41%), Gaps = 5/221 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D +++D +G + E + + ++ L E Sbjct: 6 LVVEDDDMIRDLIDIYLKKEGYDVILAADGETAKEQFLKYSPCLVILDLML--PKISGEE 63 Query: 63 LPRII--RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + + I + ++V +I ++ S + G DD V KP E++AR+ A+ RR Sbjct: 64 VCQWIRAQERNEVSIIMVTAKTSSDHKISGLKMGADDYVTKPFSPNELMARIEAVLRRGG 123 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + + + + GE+ PL + E +L Y M N +++ Q+ I+ Sbjct: 124 QFCQKISHEGLVIKPRKGEVLLNGELVPLTKYEFNLLYYFMENPNIVLSREQLIKQIHPD 183 Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + + + +++HI KLR+K+ + + R +GY Sbjct: 184 DEADILDRTIDAHIKKLREKIETEPKKPQRIVTVRGMGYQF 224 >gi|300780471|ref|ZP_07090327.1| response regulator [Corynebacterium genitalium ATCC 33030] gi|300534581|gb|EFK55640.1| response regulator [Corynebacterium genitalium ATCC 33030] Length = 239 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 51/224 (22%), Positives = 94/224 (41%), Gaps = 10/224 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + G +E S + + + + ++ G E Sbjct: 13 LVVDDEPNIVELLTVSLKFQGFEVESAESGQQALEMARELKPEAYILDVM--MPGMDGFE 70 Query: 63 LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L +RA P++ ++ +++ + G DD V KP E++ R+ I RR V Sbjct: 71 LLGKLRAEGLDAPVLFLTAKDAVEDRIHGLTIGADDYVTKPFSLEEVITRLRVILRRGNV 130 Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + IR D + GE+ L E +L YLM N ++K +I Sbjct: 131 TETETGDSTIRYADLTLNDDTHEVTKAGEIVELSPTEFNLLRYLMLNAEVVLSKAKILDN 190 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +D + NVVES+IS LR+K+ +++ R +GY + Sbjct: 191 VW-HYDFGGDGNVVESYISYLRRKVDQ-GEPQLINTVRGVGYVL 232 >gi|167836227|ref|ZP_02463110.1| phosphate regulon transcriptional regulatory protein PhoB [Burkholderia thailandensis MSMB43] Length = 233 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 45/226 (19%), Positives = 82/226 (36%), Gaps = 8/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++I+D + + G + E + L S D+ ++ L G G Sbjct: 5 ILVIEDEPAISELISVNLQHAGHCPIRAYNAEQAQSLISDVLPDLVLLDWMLPGKSGIAF 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILA------RVAA 114 R +P+I ++ Q + + G DD V KP +E++A R A Sbjct: 65 ARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRRRA 124 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 V + + L E R+L + M + + ++TQ+ Sbjct: 125 PQLTEDVVSINGLRLDPATHRVAAQGDGSEIKLDLGPTEFRLLHFFMTHPERVHSRTQLL 184 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G VEE V+ HI +LR L+ +++ R GY + Sbjct: 185 DQVWGDH-VFVEERTVDVHIKRLRAALKPAGCDAMIETVRGSGYRL 229 >gi|161522839|ref|YP_001585768.1| two component transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|189348324|ref|YP_001941520.1| two-component system aerobic respiration control protein [Burkholderia multivorans ATCC 17616] gi|160346392|gb|ABX19476.1| two component transcriptional regulator, winged helix family [Burkholderia multivorans ATCC 17616] gi|189338462|dbj|BAG47530.1| two-component system aerobic respiration control protein [Burkholderia multivorans ATCC 17616] Length = 253 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 44/231 (19%), Positives = 91/231 (39%), Gaps = 15/231 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD +++ D+ + + + S D+ ++ L GE ++ Sbjct: 10 LVVDDDPAIRELLSGYLSDNDIRVTVAACGQDMAQALESFAIDLVILD--LRMPGEDGVQ 67 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA--------- 113 + R +R S +P+ +S + + G DD + KP +RE+LARV Sbjct: 68 IARELRTRSNLPIFIVSGKRDEADRVMALELGADDYLTKPFSNRELLARVRALLRRAGAT 127 Query: 114 -AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 R K + +G R + G L E +L +A G+ +++ Q Sbjct: 128 APATGRAKDARAYRFSGWELNVGTRRLTDPAGTPVELTNGEFCLLNAFLAAPGRVLSRDQ 187 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 + + + V + ++ I +LR+K+ + + + R GY +D Sbjct: 188 LLES--SRLYDDVYDRSIDVQILRLRRKIEPDPSHPVFIRTVRGAGYVLDV 236 >gi|160893557|ref|ZP_02074341.1| hypothetical protein CLOL250_01111 [Clostridium sp. L2-50] gi|156864542|gb|EDO57973.1| hypothetical protein CLOL250_01111 [Clostridium sp. L2-50] Length = 238 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 42/230 (18%), Positives = 92/230 (40%), Gaps = 16/230 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + G + + ++L + L D+ + ++ Sbjct: 6 ILLVEDDFALAMGTEYTLKTENYEVVKASNLAEAKALLQ---PDIDLVLLDVMLPDGNGY 62 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R IR H P+I ++ + + G DD + KP +E+L R+A I RR K Sbjct: 63 DFCRYIREHDNYVPVIFLTAVSDEVNLVQGLELGADDYIAKPYRVKELLTRIAVILRRQK 122 Query: 121 VSNN----------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 +++ G R+ + + E R+L+ L+ + + + + Sbjct: 123 YNSDTKEKKEETEADIIFGHTRLDNRLYKIYQKERNVDCTPSEFRLLKELVTHADQVLTR 182 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 Q+ ++ + + V++N + +I +LR KL + + R +GY+ Sbjct: 183 KQLIERLWDVDEAFVDDNTLSVYIKRLRDKLEED--AVYIQTVRGIGYTF 230 >gi|37813698|gb|AAR04621.1| PhoP [Rhodococcus equi] Length = 242 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 49/223 (21%), Positives = 92/223 (41%), Gaps = 9/223 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + G +E + + R D ++ G Sbjct: 20 LIVDDEPSLVELLSVSLRFQGFEVETAANGAEGLDKARAFRPDALILDVM--MPGMDGFG 77 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R +RA P++ ++ +++ + G DD V KP E++ R+ I RR Sbjct: 78 MLRRLRADGVDAPVLFLTARDAVEDKVTGLTIGADDYVTKPFSLEEVVTRLRVILRRAGH 137 Query: 122 SNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 S+++ D R+ GE L E +L Y M N G ++K +I + Sbjct: 138 SDDKQSARVTFADLELDDDTREVWKAGEPVSLSPTEFTLLRYFMVNAGTVLSKPRILDHV 197 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + +D E VVES++S LR+K+ + + + R +GY + Sbjct: 198 W-NYDFGGEVGVVESYVSYLRRKI-DTTEPRLIHTLRGVGYVM 238 >gi|42518843|ref|NP_964773.1| two-component system response regulator [Lactobacillus johnsonii NCC 533] gi|41583129|gb|AAS08739.1| two-component system response regulator [Lactobacillus johnsonii NCC 533] Length = 236 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 43/231 (18%), Positives = 94/231 (40%), Gaps = 13/231 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D V + F + ++ + + + L + + Sbjct: 4 ILMVEDDNSVAEMMKMFFSKEQWDVDIAKDGVEAVEMFKANPSSYDIVTLDLNLPKKDGM 63 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ + IRA S +P+I ++ S + G D+ V KP ++AR+ A+YRR Sbjct: 64 EVAKEIRAISLSIPIIMLTARDSETDQILGLGIGADEYVTKPFSPLALIARIKALYRRSH 123 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPL----------PRRERRILEYLMANRGKRVAK 170 + + + I+ + ++ + + +E +L + + ++ Sbjct: 124 LEKDMHASNGIKYDVVTKHLKISKDRREVRFDDKVVEGLTPKEFDLLYTMAQKPKQVFSR 183 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ ++G ++ EE V++HI KLR+KL K G V + +GY D Sbjct: 184 DKLLELVWG-YEFFGEERTVDAHIKKLRQKLE-KAGPQVVQTVWGVGYKFD 232 >gi|315640403|ref|ZP_07895515.1| response regulator [Enterococcus italicus DSM 15952] gi|315483841|gb|EFU74325.1| response regulator [Enterococcus italicus DSM 15952] Length = 229 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 43/227 (18%), Positives = 89/227 (39%), Gaps = 9/227 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD + + ++G + + D+ + ++ + Sbjct: 3 ILVADDDKEIVELLSIYLKNEGYEPIQAYNGREALSKVRTIN-DIELLILDIMMPEVDGM 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ +I+R SQ+P+I ++ + + +G DD V KP + E++ARV ++ RR + Sbjct: 62 QVVKILRKESQLPIILLTAKTTDMDKIKGLVAGADDYVTKPFNPLEVMARVKSLLRRSTM 121 Query: 122 SNNRAETGP------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + I + G+ L E IL L ++ + + +IF Sbjct: 122 QVTADQPDVLEVSSLIINRDSHEVKTLDGKDIQLTALEFGILYLLASHPNRVFSADEIFE 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221 ++ + V V H+S LR K+ G + + +GY ID Sbjct: 182 RVW-KQESVVSAKTVMVHVSHLRDKIEEATGGEKIIQTVWGVGYKID 227 >gi|315646856|ref|ZP_07899971.1| hypothetical protein PVOR_15824 [Paenibacillus vortex V453] gi|315277786|gb|EFU41110.1| hypothetical protein PVOR_15824 [Paenibacillus vortex V453] Length = 232 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 41/230 (17%), Positives = 84/230 (36%), Gaps = 15/230 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + D +G S D+ ++ L + L Sbjct: 6 ILIIEDEGPIADLLAYGLAMEGFETRTAASGAAGFRELEDFSPDLLLLDWML--PDQSGL 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI---------HHREILARV 112 ++ + + A +P+ I+ + + + G DD + KP Sbjct: 64 DICKKVTADYNIPIFMITAKSDITDKVLGLEFGADDYITKPFDLREVVARIRTILRRLDQ 123 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 A R + I + + R + G + L +E +L L +RGK +++ Sbjct: 124 ANHVEREEAQEVVIRFKCIEIIMEERLVKKDGSLIDLTPKEFDLLMTLYRHRGKIYTRSE 183 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + ++G +D + V++HI +LRKKL D + + +GY + Sbjct: 184 LLDLVWG-YDFMGDTRTVDTHIQRLRKKLD---ASDLITTVFGIGYKFEK 229 >gi|167770186|ref|ZP_02442239.1| hypothetical protein ANACOL_01529 [Anaerotruncus colihominis DSM 17241] gi|167667508|gb|EDS11638.1| hypothetical protein ANACOL_01529 [Anaerotruncus colihominis DSM 17241] Length = 230 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 51/223 (22%), Positives = 92/223 (41%), Gaps = 6/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ +D +++ D+G + E L R + + ++ Sbjct: 10 ILVAEDDYSLRELMSDFLSDNGYQVYRAKDG--AEALIQIERSHIDLMICDIMMPELDGY 67 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-ILARVAAIYRRL 119 L R +R P+I ++ +L+ F +G DD + KPI E + A + R Sbjct: 68 GLTRELREAGFDLPVIMVTARETLEDKHMGFLAGTDDYMVKPIDFEELLWRVSALLRRAQ 127 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S + E G I++ D + LP++E ++L L+ GK + Q+ I+G Sbjct: 128 IASGHTLEIGGIKLDYDALSVTTEQGTDVLPKKEFQLLFKLLNTPGKTFTRQQLMDDIWG 187 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 L D +E V+ HI +LR+K F + + R LGY + Sbjct: 188 L-DSDADERTVDVHIKRLREKFGGFSQFK-IVTVRGLGYRAEK 228 >gi|28897135|ref|NP_796740.1| putative two component response regulator transcription regulator protein [Vibrio parahaemolyticus RIMD 2210633] gi|260361433|ref|ZP_05774492.1| transcriptional activator protein CopR [Vibrio parahaemolyticus K5030] gi|260878046|ref|ZP_05890401.1| transcriptional activator protein CopR [Vibrio parahaemolyticus AN-5034] gi|260896941|ref|ZP_05905437.1| transcriptional activator protein CopR [Vibrio parahaemolyticus Peru-466] gi|28805344|dbj|BAC58624.1| putative two component response regulator transcription regulator protein [Vibrio parahaemolyticus RIMD 2210633] gi|308088763|gb|EFO38458.1| transcriptional activator protein CopR [Vibrio parahaemolyticus Peru-466] gi|308089716|gb|EFO39411.1| transcriptional activator protein CopR [Vibrio parahaemolyticus AN-5034] gi|308111004|gb|EFO48544.1| transcriptional activator protein CopR [Vibrio parahaemolyticus K5030] Length = 230 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 37/227 (16%), Positives = 89/227 (39%), Gaps = 9/227 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G ++ + + +S D+ ++ L Sbjct: 3 ILIVEDEHKAGEYLQKGLIESGYVVDLVHDGVDGLYHATSEEYDLILLDIML--PKLDGW 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAI 115 ++ +R+ P+I ++ ++ + F+ G +D V KP R I Sbjct: 61 QVLNTLRSSGIHTPVIMLTAKEQVEDRVRGFELGANDYVVKPYAFAELLARVQNVFRHHI 120 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 ++ S + + R G+ L +E +LE LM G+ +++T I S Sbjct: 121 AAQVVASPQTLRVADLELDMIKRVATRAGQSMSLTAKEYALLELLMRKTGQVLSRTTIAS 180 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 ++ + + + NV++ + +LR K+ + + R +GY ++ Sbjct: 181 LVWDM-NFDSDTNVIDVAVKRLRSKVDKPFDRPLIHTVRGMGYKLEE 226 >gi|194336760|ref|YP_002018554.1| two component transcriptional regulator, winged helix family [Pelodictyon phaeoclathratiforme BU-1] gi|194309237|gb|ACF43937.1| two component transcriptional regulator, winged helix family [Pelodictyon phaeoclathratiforme BU-1] Length = 236 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 47/229 (20%), Positives = 98/229 (42%), Gaps = 12/229 (5%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + ++++D + G + E S D+ ++ L G Sbjct: 5 LILVVEDDPNLAKLLEYNLNRAGYKSHLSGTAEDALEQLSRKSFDLVLLDVML--PGMDG 62 Query: 61 LELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 EL RIIR H P+I ++ + F+ G+DD V KP RE+ R+ AI + Sbjct: 63 FELCRIIRQHQLYKDLPIIMVTAKGEEIDRILGFELGIDDYVVKPFSPRELNLRIRAILK 122 Query: 118 RLKVSNNRAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 R + + E G + + + G+ + E ++L L+ +G+ ++ ++ Sbjct: 123 RDRRQGGKIEELLKAGDLEIDLVRHIVTLDGKELVVTLMEFKLLVALLKRKGEAQSRERL 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 S ++ + D+++ +++HI+++R+KL + + R LGY + Sbjct: 183 LSDVWDV-DKSINTRTIDTHITRIREKLGETG--RMIKTVRGLGYKFEE 228 >gi|225378732|ref|ZP_03755953.1| hypothetical protein ROSEINA2194_04402 [Roseburia inulinivorans DSM 16841] gi|225209569|gb|EEG91923.1| hypothetical protein ROSEINA2194_04402 [Roseburia inulinivorans DSM 16841] Length = 251 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 50/223 (22%), Positives = 98/223 (43%), Gaps = 6/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 +++D +++ + G +E F S + ++ L G + Sbjct: 32 IYIVEDDVNIREIERYALKNSGYQVEEFECGADLFKRLESKVPALILLDIMLPNEDGLDI 91 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118 L R + ++VP+I ++ S + D G DD ++KP E+++RV A Sbjct: 92 LTKIRTDKNTAKVPIIMVTAKTSELDKVKGLDLGADDYISKPFGVMELISRVKALLRRTT 151 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++ I V +D V G++ L +E +L+YL+ N+G +++ +I + ++ Sbjct: 152 NAQEESQIAYENILVDNDKHAVYVDGKLCELTYKEFELLKYLVINKGIVLSRDKIMNQVW 211 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 G FD E V+ HI LR+KL + + R +GY ++ Sbjct: 212 G-FDYEGESRTVDMHIKTLRQKLGEAGSH--IKTVRNVGYMVE 251 >gi|239624161|ref|ZP_04667192.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239520547|gb|EEQ60413.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 224 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 48/221 (21%), Positives = 95/221 (42%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ +D + +G ++ + + SA D + ++ Sbjct: 3 ILVAEDERDMNRLITRTLEKEGYGVDSCHDGDEALTYLESADYDAAILDIM--MPRRNGY 60 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119 E+ + +R+ + P++ ++ S+ + D G DD + KP E+LAR+ +R Sbjct: 61 EVLKRLRSLGKETPVLFLTARDSIADRVAGLDLGADDYLIKPFDFDELLARIRVLTRKRS 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + G +R+ + L RE ILEYL N+GK +++ QI + ++ Sbjct: 121 THRTSVIAIGDLRIDTGSHSVVRGARAIELSSREYAILEYLALNQGKVLSREQIENHVW- 179 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 FD + NVV+ +IS LRKK+ + G + + G+ + Sbjct: 180 NFDYSGGTNVVDVYISYLRKKIDSGEGKKLIRTVWGTGWML 220 >gi|169335564|ref|ZP_02862757.1| hypothetical protein ANASTE_01979 [Anaerofustis stercorihominis DSM 17244] gi|169258302|gb|EDS72268.1| hypothetical protein ANASTE_01979 [Anaerofustis stercorihominis DSM 17244] Length = 226 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 44/222 (19%), Positives = 96/222 (43%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 +++D + + ++ F + E + + ++ L G Sbjct: 5 IYVVEDDNNISELLKCSLEAFNYYVKVFENCEDMMIALKEEKPKLMLLDIMLPGMSGIDA 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119 L+L + + +P+I +S S ++ + G DD V KP E+ +R+ ++ R Sbjct: 65 LKLLKNSNKYKSIPIIILSAKSSEIDKVNALELGADDYVTKPFSVLELSSRIKSVLRRSY 124 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 KV +N I + + GE L ++E +IL Y++ N+G+ V + ++ + ++G Sbjct: 125 KVEDNILNYKDITIDKENYLVSHDGEEVILTKKEYKILLYMLENKGRVVTREELLNEVWG 184 Query: 180 LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 +D E ++ H+ LR K+ + + + R +GY + Sbjct: 185 -YDFEGESRTLDMHMKTLRNKIGSEDDKYKYIKTIRGIGYKL 225 >gi|167750447|ref|ZP_02422574.1| hypothetical protein EUBSIR_01423 [Eubacterium siraeum DSM 15702] gi|167656598|gb|EDS00728.1| hypothetical protein EUBSIR_01423 [Eubacterium siraeum DSM 15702] Length = 255 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 39/223 (17%), Positives = 82/223 (36%), Gaps = 9/223 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD +++ +G ++ + D+ ++ Sbjct: 36 ILVADDEQKIREVIKEYAEYEGHTVYEAVDGMQAVDMAKEQDFDIIIMDVM--MPRLDGF 93 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117 + IR P++ +S L F+ GVDD V KP + I A + Sbjct: 94 SACKEIRKFKNTPILMLSARTEEYDKLFGFEMGVDDYVVKPFSPKEVLARINAIIKRNKS 153 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + + + RD + GE L +E +L YL+ N+ + + ++ + Sbjct: 154 GNEPVGETVKFEGLEINFTARDVFIDGEKANLTPKEYDLLFYLVKNKNIALTRNKLLEEV 213 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G +D ++ +++HI LR L + + R +GY Sbjct: 214 WG-YDFFGDDRTIDTHIKMLRNNLGPY--RKFIVTLRGMGYKF 253 >gi|154246098|ref|YP_001417056.1| two component transcriptional regulator [Xanthobacter autotrophicus Py2] gi|154160183|gb|ABS67399.1| two component transcriptional regulator, winged helix family [Xanthobacter autotrophicus Py2] Length = 261 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 45/226 (19%), Positives = 92/226 (40%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ G + E ++ R D ++ L L Sbjct: 29 ILVVDDDLEIRKLLGRYLAAQGFRVTTAGDGREMEEKLATQRIDFVVLDLML--PDASGL 86 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 +L R +R S++P+I ++ + + G DD + KP + RE++AR+ A+ RR Sbjct: 87 DLCRALRNRSKIPVILLTALKEDVDRIIGLEIGADDYLGKPFNPRELVARIRAVLRRTGA 146 Query: 122 SNNRAETGPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + F+ R + +G L E +L + G+ +++ Q+ Sbjct: 147 AEPEPVAATAFRFARFRAEPELRRVTDAEGVEVALTGAEFDLLMAFLERPGRILSREQLL 206 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G + + V+ +S+LR+KL ++ F + + R GY + Sbjct: 207 DITRGR-EAGPFDRSVDVLVSRLRRKLGDQGAFQILKTLRNGGYQL 251 >gi|118581362|ref|YP_902612.1| two component transcriptional regulator [Pelobacter propionicus DSM 2379] gi|118504072|gb|ABL00555.1| two component transcriptional regulator, winged helix family [Pelobacter propionicus DSM 2379] Length = 223 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 43/221 (19%), Positives = 92/221 (41%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D V +D S+ + S ++ ++ + + L Sbjct: 3 ILVVEDEKKVAGFIKRGLEEDDYSVTIVHDGAEGLKQAQSGEYSLAILDVMV--PKKDGL 60 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R +R SQ+P++ ++ + + ++G DD + KP E+LARV A+ RR + Sbjct: 61 TVIRELREGGSQMPVLMLTARGTTDDIVSGLEAGADDYLTKPFAFAELLARVRALLRRSE 120 Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 R+ G L +E +LEYL+ N K +++ I ++ Sbjct: 121 HDRGAEIFFADLRLDPVSHKVWRSGNEIDLTAKEYGLLEYLVRNPNKVLSRAMIAEHVWD 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + N+++ +++ LRKK+ + + + R GY + Sbjct: 181 -YAFDSFTNIIDVYVNYLRKKVDKEYSTKLIHTVRGQGYIL 220 >gi|309778021|ref|ZP_07672962.1| DNA-binding response regulator RegX3 [Erysipelotrichaceae bacterium 3_1_53] gi|308914211|gb|EFP60010.1| DNA-binding response regulator RegX3 [Erysipelotrichaceae bacterium 3_1_53] Length = 227 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 33/221 (14%), Positives = 87/221 (39%), Gaps = 4/221 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 + ++D + G + +G + + + D+ ++ L + Sbjct: 4 LFVEDDQAIAMGLVYTLKKEGYEVVWCDCKQAALQQLHRETFDLLLLDVGL--PDGSGYD 61 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI-LARVAAIYRRLKV 121 + ++ VP++ ++ + D G DD + KP E+ + R + Sbjct: 62 ICTYAKSRQDVPVLFLTALDDEGNVVMGLDMGGDDYITKPFRINELLSRIRSVQRRYHRQ 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + + ++ + E L E R+L L+ + + ++++Q+ I+ + Sbjct: 122 EEDIIQIQYLSIYPKQGKVYKEQEEILLTALEYRLLMVLVNHPQQVLSRSQLLEGIWDVA 181 Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 + V +N + ++ +LR+KL + + + R LGY ++ Sbjct: 182 GDFVNDNTLSVYMKRLREKLERDPKNPTIIVTVRGLGYRLE 222 >gi|262280534|ref|ZP_06058318.1| response regulator [Acinetobacter calcoaceticus RUH2202] gi|262258312|gb|EEY77046.1| response regulator [Acinetobacter calcoaceticus RUH2202] Length = 236 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 40/224 (17%), Positives = 87/224 (38%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ G + + R + ++ L G G + Sbjct: 6 ILIVDDELPIREMIHTSLDMAGFQCLQAEDAKQAHQIIVDQRPALILLDWMLPG-GVSGV 64 Query: 62 ELPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 +L R ++ +P+I ++ + D+G DD + KP RE+++R+ A+ RR Sbjct: 65 DLCRRLKRDENLAEIPVIMLTARGEEDHKVQGLDAGADDYMTKPFSTRELVSRIKAVLRR 124 Query: 119 LKVSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + + + + E R+L + M + + + Q+ Sbjct: 125 ANALSGEKMIDANGLILDPVSQRVSFGDSILDMGPTEYRLLAFFMTHPERAYTRAQLLDQ 184 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + +E+ ++ HI +LRK L V + R GY Sbjct: 185 VWG-GNVYIEDRTIDVHIRRLRKVLEPFGVDRFVQTVRGTGYRF 227 >gi|229160850|ref|ZP_04288840.1| hypothetical protein bcere0009_16390 [Bacillus cereus R309803] gi|228622587|gb|EEK79423.1| hypothetical protein bcere0009_16390 [Bacillus cereus R309803] Length = 229 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 40/227 (17%), Positives = 86/227 (37%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D A++ + G +++ S E D+ ++ L G Sbjct: 4 ILIIEDEAIIAELEKDYLEVAGYTVDIDYSGEKGLQRVLLEDYDLLILDIML--PGIDGY 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + +R +P++ +S + G DD + KP E++ARV A R Sbjct: 62 EICKQVRLEKDIPILMVSAKQEEIDKIKGLGFGADDYIIKPFSPSEMVARVNAHLARYDR 121 Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + + R V G L +E +L + + + +K ++F Sbjct: 122 LTGKRELIKDEIRIRGLFIDKSARRVFVNGTEVMLTGKEFDLLTCMAEHPNQVFSKDRLF 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++G+ D + V H+ +R K+ + +++ +GY Sbjct: 182 ETVWGM-DVIGDAATVAVHVKNIRHKIELDPFDKSYIETIWGVGYRF 227 >gi|89901505|ref|YP_523976.1| osmolarity response regulator [Rhodoferax ferrireducens T118] gi|89346242|gb|ABD70445.1| two component transcriptional regulator, winged helix family [Rhodoferax ferrireducens T118] Length = 243 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 43/230 (18%), Positives = 88/230 (38%), Gaps = 14/230 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD ++D +G + + L D+ ++ GE L Sbjct: 11 ILICDDDVRIRDLLRRYLTQEGFDVLQAEDGKSLTRLLVREPVDLIVLDLM--MPGEDGL 68 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R +R A+ + P+I ++ + + G DD + KP + RE+LAR+ A+ RR Sbjct: 69 SICRRLRAANDRTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARIHAVLRRRP 128 Query: 121 VSNNR---------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 GP R E PL E +L+ L+ + + +++ Sbjct: 129 TQEAPGSPASDSAVVTFGPFTFDLGARTLRKDDEDQPLTTGEFAMLKALVRHPRQPLSRE 188 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++ G + + ++ +S+LRK + + + + +GY Sbjct: 189 KLAQLARGR-EFEPFDRSLDVQVSRLRKLVEVDAAAPRYIQTVWGVGYVF 237 >gi|310778431|ref|YP_003966764.1| two component transcriptional regulator, winged helix family [Ilyobacter polytropus DSM 2926] gi|309747754|gb|ADO82416.1| two component transcriptional regulator, winged helix family [Ilyobacter polytropus DSM 2926] Length = 224 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 38/222 (17%), Positives = 94/222 (42%), Gaps = 5/222 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61 ++++D ++ F +G +E + ++ D+ ++ L G+ Sbjct: 4 LIVEDDLEIQQLVSYFFSKEGYGVETASDGLEGLRFLKKSKPDLVILDIMLPSLDGKNFT 63 Query: 62 ELPRIIRAHSQVPLIGI-SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ R + P+I + + ++ L+ + G +D + KP RE++ R Sbjct: 64 KIVRELPEEYGNPVIIMLTAKTEIEDVLEGLEIGANDYMKKPFDPRELILRSKKFLNNGA 123 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + + V D +G L ++E +L L+ N+G +++ +I ++ Sbjct: 124 KVSKKYIFKDVVVDDDRHLVTEEGVEVELSKKEYDLLHLLIRNKGLVLSREKILDKVWNT 183 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 A + V+ +ISKLR+K+ + + + + +GY ++ Sbjct: 184 SYYAGD-RSVDIYISKLREKIVSISKN--IKTVKGVGYKLEE 222 >gi|308175743|ref|YP_003922448.1| two component transcriptional regulator, winged helix family [Bacillus amyloliquefaciens DSM 7] gi|307608607|emb|CBI44978.1| two component transcriptional regulator, winged helix family [Bacillus amyloliquefaciens DSM 7] gi|328555717|gb|AEB26209.1| two component transcriptional regulator, winged helix family protein [Bacillus amyloliquefaciens TA208] gi|328914103|gb|AEB65699.1| two component transcriptional regulator, winged helix family [Bacillus amyloliquefaciens LL3] Length = 227 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 50/220 (22%), Positives = 99/220 (45%), Gaps = 5/220 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + D ++G + L + + ++ ++ G LE Sbjct: 10 LIVDDEPAIIDFLTMGLVNEGFEVMSAADGMSAMNLVKTFQPHIAVLDVM--MPGMDGLE 67 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-AIYRRLKV 121 L R+++ S +I ++ ++ + G DD + KP E+LAR+ I + Sbjct: 68 LSRMLKKTSNTAVIMLTAKDEVELRVKALIEGADDYMIKPFSFEELLARIYARIRNQFPH 127 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + GP R+ R+ + L E +L++L+ G ++KT+I ++G + Sbjct: 128 LFDEVVLGPFRIDDRSREIHYNEQPLKLSATEYELLKFLVLRHGTVLSKTRILDQVWG-Y 186 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D E+N+VE +I LR+KL++K + + R GY +D Sbjct: 187 DFYGEDNIVEVYIRSLREKLKDK-EHKVIRTVRGAGYRVD 225 >gi|291486019|dbj|BAI87094.1| hypothetical protein BSNT_05286 [Bacillus subtilis subsp. natto BEST195] Length = 237 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 44/230 (19%), Positives = 93/230 (40%), Gaps = 11/230 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + G ++ L + + + D+ ++ L Sbjct: 4 ILLVEDDERIASLLGGHLQKYGYEVKIAEQLNDIKLEFAEMKPDLVLLDINL--PFFDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 R IR S P+I IS + ++G DD + KP H ++A++ ++ RR Sbjct: 62 YWCRQIRTISNAPIIFISARIDELNQVMAIENGGDDYITKPFHLEVVMAKIKSVLRRTYG 121 Query: 122 SNNRAETGPIRV--------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + R+ + D + E ++E ++L + K V++ ++ Sbjct: 122 EYSPSLPQESRIVELGGLTIYPDQNEAEWNSSRILFSQKEFQLLSIFVREHKKIVSRDEL 181 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 A++ D V++N + ++++LR+KL N D + + R GY N Sbjct: 182 LEALWDDVDF-VDDNTLTVNVNRLRRKLENAGLKDCISTIRGQGYQFQVN 230 >gi|303235216|ref|ZP_07321835.1| response regulator receiver domain protein [Finegoldia magna BVS033A4] gi|302493703|gb|EFL53490.1| response regulator receiver domain protein [Finegoldia magna BVS033A4] Length = 218 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 40/220 (18%), Positives = 99/220 (45%), Gaps = 6/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++++G + G + + + +++ ++ L L Sbjct: 3 LLVVEDDQMIREGICEFLSEFGYKTYQAEDGKQAISIFENNEINLAILDIQL--PYINGL 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + IR S +P I ++ + + ++ F S D + KP + R+ ++ ++ Sbjct: 61 DVLKKIRETSDIPAIMLTAFSDEEYKINAFTSLADGYIEKPFSLPVLKVRIESLIKKHYG 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 +N V ++ G+ + +E IL+Y++ N G+ + + QI +++ Sbjct: 121 NNETFNYKNTEVNFASYTAKLNGKKVDVNAKELEILKYMIENEGQALTRMQIIDSVWKET 180 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 DE + V++ +I +LRKKL D + + R +GY ++ Sbjct: 181 DEIPFDRVIDVYIKELRKKLEL----DCIVTIRNVGYKLE 216 >gi|227529596|ref|ZP_03959645.1| response regulator [Lactobacillus vaginalis ATCC 49540] gi|227350495|gb|EEJ40786.1| response regulator [Lactobacillus vaginalis ATCC 49540] Length = 238 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 45/233 (19%), Positives = 83/233 (35%), Gaps = 15/233 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D V + F +G E E S+A + I L + + Sbjct: 3 ILMIEDNHSVCEMMAMFFKKEGWQYEFAYDGVEAEEKFSAAPHEWDVILLDLNLPKKDGM 62 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPI------------HHREI 108 ++ IR S PLI ++ S + + G DD V KP R Sbjct: 63 QVAADIRRISTTVPLIMLTARDSESDQVLGLEIGADDYVTKPFSPITLIARIKALQRRSQ 122 Query: 109 LARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 L+ + + V L +E +L+ L + + Sbjct: 123 LSATQGAQHSNQDRFDIKTKHFKMDTKTREVYMYGKPVKDLTPKEFDLLKTLASKPRQVF 182 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++Q+ ++ ++ +E V++HI KLR+KL +G + + +GY D Sbjct: 183 TRSQLLQLVWD-YEYYGDERTVDAHIKKLRQKLEA-VGPQVIQTVWGVGYKFD 233 >gi|197105366|ref|YP_002130743.1| response regulator(with CheY-like receiver domain and winged-helix DNA-binding domain) [Phenylobacterium zucineum HLK1] gi|196478786|gb|ACG78314.1| response regulator(with CheY-like receiver domain and winged-helix DNA-binding domain) [Phenylobacterium zucineum HLK1] Length = 249 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 54/228 (23%), Positives = 90/228 (39%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++D G G +E E + D+ ++ L GE L Sbjct: 18 ILMVDDDPGIRDVVSDFLGRHGYKVETAADAPEMERVLERGPVDLIVLDVML--PGEDGL 75 Query: 62 ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R + A + P+I +S + + G DD + KP + RE+LARV A+ RR + Sbjct: 76 AICRRLTTADNAPPIIMLSAMGEDTDRIVGLELGADDYLAKPCNPRELLARVRAVLRRAE 135 Query: 121 VSNNRAETGPIRVF-------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 N G F QG V L E +L + + + + Q+ Sbjct: 136 QRTNGGALGAGCEFAGWRLDLVRRELRSPQGVVVNLSSGEFSLLRAFVERPQRVLTRDQL 195 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 G D + ++ IS+LR+KL + G D + + R GY Sbjct: 196 LEFARG-PDSDAFDRAIDVQISRLRRKLDDGGGGHDLIRTIRNEGYMF 242 >gi|169349485|ref|ZP_02866423.1| hypothetical protein CLOSPI_00203 [Clostridium spiroforme DSM 1552] gi|169293560|gb|EDS75693.1| hypothetical protein CLOSPI_00203 [Clostridium spiroforme DSM 1552] Length = 271 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 38/232 (16%), Positives = 84/232 (36%), Gaps = 15/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + ++ N+ + ++ ++ + Sbjct: 39 ILVVEDEIEIAKAIEIYLKSQNYNVYIANNGLEGLKIIEQHPIHLAIVDIM--MPVMDGI 96 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILAR 111 E+ IR P+I +S + + G DD V KP + Sbjct: 97 EMTMKIREQYDFPIIFLSAKSEDIDKITGLNIGGDDYVTKPFVPMELLARVSSQLRRYHK 156 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 I + + + ++ G + + D ++ + G++ + E +ILE LM G+ + Sbjct: 157 FLNIIDQKQENTHKYIVGGLELDIDTKEVIIDGKIVKVTPIELKILELLMEKPGRVFSSE 216 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 QI+ ++ + A+ V HI LR+K+ N + +GY I+ Sbjct: 217 QIYENVW--HEAAINTETVMVHIRNLREKIEINPSNPQYLKVVWGVGYKIEK 266 >gi|117617627|ref|YP_854723.1| transcriptional regulatory protein CpxR [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117559034|gb|ABK35982.1| transcriptional regulatory protein CpxR [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 231 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 49/225 (21%), Positives = 91/225 (40%), Gaps = 11/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L+DD + + +G + E L + ++ ++ Sbjct: 4 ILLVDDDLELTQLLTEILTLEGFQVTVAEDGEEGLQLLAEQHFNLVLLDVM--MPKLNGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + +R P++ ++ Q ++ ++G DD + KP RE+LARV AI RR + Sbjct: 62 AMLARLRKTHDTPVLMLTARGDSQDRVNGLEAGADDYLAKPFDDRELLARVRAILRRTQS 121 Query: 122 SNNRA-------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + + + + GE+ L E +LE L+ N G+ V+K+Q+ Sbjct: 122 TQPQRGGSSEEVRFMDLVLQPGLQQASCHGELLELTATEFGLLECLLRNPGQIVSKSQLS 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGY 218 + G E + ++ H+S LRKKL G + R GY Sbjct: 182 ELVLGKKLEPFD-RAIDMHLSNLRKKLPERTDGQPRFKTVRGRGY 225 >gi|332652940|ref|ZP_08418685.1| response regulator DrrA [Ruminococcaceae bacterium D16] gi|332518086|gb|EGJ47689.1| response regulator DrrA [Ruminococcaceae bacterium D16] Length = 228 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 44/221 (19%), Positives = 79/221 (35%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ + G + S +A D ++ L Sbjct: 5 ILIVDDEPALQSMVQEILSQAGYETKTALSCAQALEQFRTAVPDAVLLDVML--PDGDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-HHREILARVAAIYRRLK 120 L +R VP++ +S ++ L G DD + KP +L A + R + Sbjct: 63 SLFGKLREIRDVPVLFLSARDEDESRLRGLGLGADDYITKPFLPQELLLRLRAVLRRVYR 122 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 A G + G+ L +E +L L RG V + SA++ Sbjct: 123 EEVCLARLGEAEINWGKGTVRRGGQETALTAKEFALLRKLWEARGNIVTIDALCSALWDG 182 Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 EN + HI +LR+K+ + + + R LGY + Sbjct: 183 P-LVGYENTLMVHIRRLREKVEADPSHPQFLLTVRGLGYRL 222 >gi|290769853|gb|ADD61625.1| putative protein [uncultured organism] Length = 225 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 54/224 (24%), Positives = 105/224 (46%), Gaps = 5/224 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D +++ G ++ E L ++ R D+ ++ L + Sbjct: 3 LLLIEDEPTLRESVAKKLRRSGYEMDDCGDGETALELLAAERYDLVLLDLNL--PKVNGM 60 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119 + R +R + P++ +S + ++ D+G +D + KP H E+ ARV + R+ Sbjct: 61 TVLRTLRKTDLETPVLILSARSEISDKVEGLDAGANDYLAKPFHLAELEARVRSLTRRQF 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + G + + R G+ PL R+E +LEYL+ ++G+ V++ ++ ++ Sbjct: 121 IQRDVCLRCGRLTFDTKSRLAMADGQPIPLTRKESGVLEYLLLHQGRPVSQEELIEHVWD 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 N + HIS LRKKLR LG+DP+ ++ GY ++ N Sbjct: 181 SS-VDAFSNSIRVHISALRKKLRTALGYDPIRNRIGEGYELEEN 223 >gi|254472023|ref|ZP_05085424.1| DNA-binding response regulator [Pseudovibrio sp. JE062] gi|211959225|gb|EEA94424.1| DNA-binding response regulator [Pseudovibrio sp. JE062] Length = 242 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 39/229 (17%), Positives = 88/229 (38%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ + + S + ++ D+ ++ GE L Sbjct: 8 ILIVDDHRDIRESLARYLTKNNMRTTVAESAAAARKVLKNSSIDLVVLDIM--MPGEDGL 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R + +Q P+I ++ + + G DD V KP + RE+LAR+ A+ RR Sbjct: 66 SLCRHLVETNQAPVILLTAMAEDTDRVVGLEIGADDYVTKPFNPRELLARIRAVLRRATS 125 Query: 122 SNNRAETGPIRVFSDGRDP---------EVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + + + PL E ++L + +++ Q Sbjct: 126 VPRERDPIETEKLAFNGWMLDTARRELIDPEQVAVPLSSGEFQLLLAFLKRPRVVLSREQ 185 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + G V + +++ +S+LR+K+ + + + + GY+ Sbjct: 186 LLDLTSGRS-LGVFDRSIDNQVSRLRRKIEIDPKSPELIKTVWGGGYTF 233 >gi|126435514|ref|YP_001071205.1| two component transcriptional regulator [Mycobacterium sp. JLS] gi|126235314|gb|ABN98714.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. JLS] Length = 263 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 52/229 (22%), Positives = 94/229 (41%), Gaps = 14/229 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + + + S + DV ++ L G LE Sbjct: 34 LVVDDETALAEVVASYLEREQFEASVVGSGAEAIAVARGLDPDVVILDIGL--PGIDGLE 91 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +R S ++ ++ + T+ G DD V KP RE++AR+ A+ RR ++ Sbjct: 92 VCRQLRTFSDAYVVMLTARNTELDTVLGLTVGADDYVTKPFSPRELVARIRAMLRRPRMR 151 Query: 123 ----------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 GP+ + R+ + GE L R E ILE L A G +++ Q Sbjct: 152 PVAGADTEDLPPPRVFGPLSIDVAAREVGLDGESILLTRTEFDILEALSARPGVVLSRRQ 211 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220 + + E++V+ HI LR+KL + + + R +GY + Sbjct: 212 LLDIVREGP-WVGNEHLVDVHIGHLRRKLGDDAANPRFIMTVRGVGYRM 259 >gi|109896556|ref|YP_659811.1| osmolarity response regulator [Pseudoalteromonas atlantica T6c] gi|332304523|ref|YP_004432374.1| two component transcriptional regulator, winged helix family [Glaciecola agarilytica 4H-3-7+YE-5] gi|109698837|gb|ABG38757.1| two component transcriptional regulator, winged helix family [Pseudoalteromonas atlantica T6c] gi|332171852|gb|AEE21106.1| two component transcriptional regulator, winged helix family [Glaciecola agarilytica 4H-3-7+YE-5] Length = 240 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 37/229 (16%), Positives = 90/229 (39%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ + G + + E + + + ++ L GE L Sbjct: 8 ILVVDDDMRLRSLLERYLVEQGYQVRAAANAEQMDRMLERENFHLMVLDLML--PGEDGL 65 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112 + R +R +++P++ ++ + + G DD + KP + RE + +V Sbjct: 66 SICRRLRQKENEIPIVMLTAKGDEVDRIIGLEMGADDYLPKPFNPRELLARVKAVLRRKV 125 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + E G ++ R+ +G L E +L+ L+ + + +++ + Sbjct: 126 VEAPGAPSHAEQIVEFGKFKLNLGTREMSSEGTPMTLTSGEFAVLKSLVTHPREPLSRDK 185 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220 + + G D + E ++ +S+LR+ L + + + LGY Sbjct: 186 LMNLARGR-DYSALERSIDVQVSRLRRMLEEDPANPRYIQTVWGLGYVF 233 >gi|327399045|ref|YP_004339914.1| winged helix family two component transcriptional regulator [Hippea maritima DSM 10411] gi|327181674|gb|AEA33855.1| two component transcriptional regulator, winged helix family [Hippea maritima DSM 10411] Length = 223 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 51/218 (23%), Positives = 93/218 (42%), Gaps = 4/218 (1%) Query: 4 LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVLE 62 +I+D + + G ++ F++ D+ ++ L G +GE +E Sbjct: 7 VIEDDHKIAELIEFTLSSAGYEVQSFDNANDALIYIKQDLPDLIILDLMLPGLQGEDFIE 66 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L +P++ I+ + G DD + KP + +LA+V AI RRLK Sbjct: 67 LVSSKEKLKDIPILIITAKTQDDLFAQLLNKGADDFLVKPFSTKVLLAKVNAILRRLKNR 126 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 + I + D V E L + E IL+ + N K ++ +I +++G ++ Sbjct: 127 TSVISVCGIELNEDEYSILVNSEPIELTKTEFSILKLFLENPNKVFSRDRILESVWG-YN 185 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 V + ++ H+S LRKKL+ K + S +GY Sbjct: 186 ANVSDRTIDVHLSNLRKKLKEKGS--RIISIPRVGYKF 221 >gi|317471402|ref|ZP_07930756.1| response regulator receiver domain-containing protein [Anaerostipes sp. 3_2_56FAA] gi|316901153|gb|EFV23113.1| response regulator receiver domain-containing protein [Anaerostipes sp. 3_2_56FAA] Length = 226 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 53/223 (23%), Positives = 93/223 (41%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D V + G E S D+ ++ L K Sbjct: 4 ILIIEDNQDVSRMLSEFLSESGYQPEAAFSGTDGLIKLREKSYDLVLLDLMLPYK--SGD 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R +R S +P+I IS + T +D G DD + KP E+ ARV + RR Sbjct: 62 QVLRELRGFSNIPVIVISAKDIVGTKIDLLKLGADDYITKPFDLGEVEARVLSNLRRQSS 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQ---GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 S + +T R +D + G+ L +E IL+ LM + K K ++ ++ Sbjct: 122 SKVKEQTLQYRDLVLSKDAKSVLLGGQDLELTAKEYAILQLLMEHPKKVYTKANLYETVW 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 + ++N V++HIS LR KL+ +++ +GY + Sbjct: 182 -EDEYLGDDNAVKTHISNLRNKLKKASPLEQYIETVWGIGYRM 223 >gi|300718589|ref|YP_003743392.1| two-component system response regulator [Erwinia billingiae Eb661] gi|299064425|emb|CAX61545.1| Two-component system response regulator [Erwinia billingiae Eb661] Length = 220 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 47/223 (21%), Positives = 96/223 (43%), Gaps = 9/223 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D AL+ G + +G +++ + L S + + ++ L Sbjct: 3 LLVVEDDALLLGGLVQALTTEGYAVDAAKNGAEACALLQSGQYSLIVLDLGL--PDRDGR 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +L R R + P++ ++ +L+ +D D+G DD + KP E+ ARV A+ RR + Sbjct: 61 QLLRQWRKETIDLPVLILTARDALEDRVDGLDAGADDYLVKPFALAELKARVRALIRRYQ 120 Query: 121 VSNNRAETGPIRVFS-DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++ + + + + L +E +L L+ + V + + +Y Sbjct: 121 GRSDNLLQQGDLSLNLSSQQVYIDNQPVELTPKEFALLTRLLMRISQTVHRETLQQDLYS 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 D N +E HI LR+KL G D + + R +GY ++ Sbjct: 181 WQD-DTGSNTLEVHIHNLRRKL----GKDRIKTVRGVGYRLEE 218 >gi|300723580|ref|YP_003712885.1| response regulator in two-component regulatory system with BaeS [Xenorhabdus nematophila ATCC 19061] gi|297630102|emb|CBJ90739.1| response regulator in two-component regulatory system with BaeS (OmpR family) [Xenorhabdus nematophila ATCC 19061] Length = 235 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 44/221 (19%), Positives = 84/221 (38%), Gaps = 5/221 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + + + + D+ ++ L G L Sbjct: 11 LIVEDEPKLGRLLVDYLQSADYQTAWLKRGDEVIDHVQKYQPDIILLDLML--PGLDGLS 68 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR S +P++ ++ L + G DD + KP RE++ARV I RR Sbjct: 69 VCREIRKFSDIPIVMMTAKTEEIDRLLGLEIGADDYICKPYSPREMVARVKTILRRCYRP 128 Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + + V L E R+L+ + + G+ ++ Q+ + +Y Sbjct: 129 QDIISEQGALSIDENHFQARYLERVLELTPIEFRLLKIMSSQPGRVFSRDQLLNNLYNDH 188 Query: 182 DEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 V + ++SHI LR+KL + S LGY + Sbjct: 189 -RIVNDRTIDSHIKNLRRKLEQLDEDKSFIRSIYGLGYRWE 228 >gi|293381660|ref|ZP_06627641.1| response regulator receiver domain protein [Lactobacillus crispatus 214-1] gi|290921707|gb|EFD98728.1| response regulator receiver domain protein [Lactobacillus crispatus 214-1] Length = 242 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 45/233 (19%), Positives = 90/233 (38%), Gaps = 15/233 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D V + F +G + + + I L + + Sbjct: 7 ILMVEDDTSVAEMMGMFFKKEGWQQDIAVDGVEAVDMFKKNADKYDLITLDLNLPKKDGI 66 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ + +RA S P+I ++ S + G D+ V KP ++AR+ A++RR+ Sbjct: 67 QVAKEVRAISPTVPIIMLTARGSESDQVLGLGIGADEYVTKPFSPIALIARIKALHRRVM 126 Query: 121 VSNNRAETGPIRVFS------------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 + A T V L +E +L + + Sbjct: 127 MEEEPAHTQEDNQDYEITTDHLKISKNRREVLFDNQPVMGLTPKEFDLLYTMAQKPKQVF 186 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ Q+ ++G ++ EE V++HI KLR+KL K+G + + +GY D Sbjct: 187 SRDQLLELVWG-YEYYGEERTVDAHIKKLRQKLE-KVGAKVIQTVWGVGYKFD 237 >gi|227524819|ref|ZP_03954868.1| response regulator [Lactobacillus hilgardii ATCC 8290] gi|227088034|gb|EEI23346.1| response regulator [Lactobacillus hilgardii ATCC 8290] Length = 242 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 40/233 (17%), Positives = 92/233 (39%), Gaps = 18/233 (7%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + ++ + + + D+ ++ L E Sbjct: 5 LVVDDEPAIVTLLEYNLKQASFDVQSATNGADALSMIENNHYDIVLLDLML--PEMSGEE 62 Query: 63 LPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + I + P+I ++ + + + G DD V KP RE++AR+ A+ RR + Sbjct: 63 VLKRIRMDRNDTPVIVLTAKDTEFDKVFGLEMGADDYVPKPFSPREVIARINAVLRRYEK 122 Query: 122 SNNRAETG-------------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 S + P + V + L +E +++YL+ + + + Sbjct: 123 SEPSNQQNAAPIKSGDIETTGPFTIDHKQYKVSVNDQNLKLTPKEFELMQYLVGHENQVL 182 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++ Q+ ++G FD + + +V+ I+ LR+K+ + + + R GY Sbjct: 183 SRDQLLQGVWG-FDYSGQSRMVDIQIAHLREKIESDPKRPKYLKTIRGFGYEF 234 >gi|30022904|ref|NP_834535.1| two-component response regulator [Bacillus cereus ATCC 14579] gi|206969682|ref|ZP_03230636.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|218231548|ref|YP_002369645.1| DNA-binding response regulator [Bacillus cereus B4264] gi|218900007|ref|YP_002448418.1| DNA-binding response regulator [Bacillus cereus G9842] gi|228903354|ref|ZP_04067485.1| DNA-binding response regulator [Bacillus thuringiensis IBL 4222] gi|228910691|ref|ZP_04074502.1| DNA-binding response regulator [Bacillus thuringiensis IBL 200] gi|228923592|ref|ZP_04086872.1| DNA-binding response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228942018|ref|ZP_04104561.1| DNA-binding response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228955112|ref|ZP_04117127.1| DNA-binding response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228961108|ref|ZP_04122734.1| DNA-binding response regulator [Bacillus thuringiensis serovar pakistani str. T13001] gi|228967956|ref|ZP_04128966.1| DNA-binding response regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|228974949|ref|ZP_04135510.1| DNA-binding response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981542|ref|ZP_04141839.1| DNA-binding response regulator [Bacillus thuringiensis Bt407] gi|229048543|ref|ZP_04194104.1| DNA-binding response regulator [Bacillus cereus AH676] gi|229112300|ref|ZP_04241839.1| DNA-binding response regulator [Bacillus cereus Rock1-15] gi|229130118|ref|ZP_04259079.1| DNA-binding response regulator [Bacillus cereus BDRD-Cer4] gi|229147408|ref|ZP_04275757.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24] gi|229153043|ref|ZP_04281224.1| DNA-binding response regulator [Bacillus cereus m1550] gi|229181156|ref|ZP_04308488.1| DNA-binding response regulator [Bacillus cereus 172560W] gi|229193119|ref|ZP_04320074.1| DNA-binding response regulator [Bacillus cereus ATCC 10876] gi|296505302|ref|YP_003667002.1| two-component response regulator [Bacillus thuringiensis BMB171] gi|29898463|gb|AAP11736.1| Two-component response regulator [Bacillus cereus ATCC 14579] gi|206735370|gb|EDZ52538.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|218159505|gb|ACK59497.1| DNA-binding response regulator [Bacillus cereus B4264] gi|218545331|gb|ACK97725.1| DNA-binding response regulator [Bacillus cereus G9842] gi|228590383|gb|EEK48247.1| DNA-binding response regulator [Bacillus cereus ATCC 10876] gi|228602347|gb|EEK59836.1| DNA-binding response regulator [Bacillus cereus 172560W] gi|228630463|gb|EEK87111.1| DNA-binding response regulator [Bacillus cereus m1550] gi|228636090|gb|EEK92571.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24] gi|228653333|gb|EEL09210.1| DNA-binding response regulator [Bacillus cereus BDRD-Cer4] gi|228671140|gb|EEL26445.1| DNA-binding response regulator [Bacillus cereus Rock1-15] gi|228722807|gb|EEL74191.1| DNA-binding response regulator [Bacillus cereus AH676] gi|228778221|gb|EEM26491.1| DNA-binding response regulator [Bacillus thuringiensis Bt407] gi|228784802|gb|EEM32820.1| DNA-binding response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228791737|gb|EEM39329.1| DNA-binding response regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|228798551|gb|EEM45538.1| DNA-binding response regulator [Bacillus thuringiensis serovar pakistani str. T13001] gi|228804622|gb|EEM51226.1| DNA-binding response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228817687|gb|EEM63769.1| DNA-binding response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228836061|gb|EEM81422.1| DNA-binding response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228848959|gb|EEM93802.1| DNA-binding response regulator [Bacillus thuringiensis IBL 200] gi|228856315|gb|EEN00844.1| DNA-binding response regulator [Bacillus thuringiensis IBL 4222] gi|296326354|gb|ADH09282.1| two-component response regulator [Bacillus thuringiensis BMB171] gi|326942620|gb|AEA18516.1| two-component response regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 231 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 42/226 (18%), Positives = 91/226 (40%), Gaps = 9/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G + + ++ + + ++ L Sbjct: 4 ILIVEDDPNISSLLQSHIQKYGYEAVVAENFDDIMESFNAVKPHLVLLDVNL--PKFDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 R IR S P+I IS + +SG DD + KP H+ ++A++ RR+ Sbjct: 62 YWCRQIRHESTCPIIFISARAGEMEQIMAIESGADDYITKPFHYDVVMAKIKGQLRRIYG 121 Query: 122 SNNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + I F + + E L ++E + E L++ + ++ + + Sbjct: 122 DYAPNISERIVEVEGLKLFPERPEIHFGSEQVLLTKKEAILAEMLLSKFPRTASREDLLA 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 A++ + VEEN + +I++LRKK + +++ R LGY + Sbjct: 182 ALWD-DESFVEENTLNVNITRLRKKFNELGIENSIETVRGLGYRFN 226 >gi|289523923|ref|ZP_06440777.1| phosphate regulon transcriptional regulatory protein PhoB [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289502579|gb|EFD23743.1| phosphate regulon transcriptional regulatory protein PhoB [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 236 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 44/224 (19%), Positives = 91/224 (40%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 +L++D + G + + + + D+ ++ L G +V Sbjct: 6 ILLVEDEENIASLVSQYLSMQGYEIIKAADGDRALEICYESLPDLIILDLMLPIMDGWEV 65 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + +P+I ++ + ++ + G DD V KP E+ AR+ I RR Sbjct: 66 CRRLKKDPITKDIPIIILTARRDERDVIEGLELGADDYVKKPFSLAELHARIKTILRRAH 125 Query: 121 VSNNRAETGPIRVFS---DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 ++ + ET + D + L E +++ LM N K V++ Q+ + + Sbjct: 126 PASPQNETIKLGKLELIADADILTYEDIKIVLTPIETELIKILMKNAPKIVSREQLLAKV 185 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 +G E ++ HIS+LR K++ F+ +++ R GY + Sbjct: 186 WGT--YLGETRTIDVHISRLRTKVKKAGLNFNLIETVRHRGYRL 227 >gi|126700337|ref|YP_001089234.1| two-component response regulator [Clostridium difficile 630] gi|254976316|ref|ZP_05272788.1| two-component response regulator [Clostridium difficile QCD-66c26] gi|255093701|ref|ZP_05323179.1| two-component response regulator [Clostridium difficile CIP 107932] gi|255101892|ref|ZP_05330869.1| two-component response regulator [Clostridium difficile QCD-63q42] gi|255307761|ref|ZP_05351932.1| two-component response regulator [Clostridium difficile ATCC 43255] gi|255315453|ref|ZP_05357036.1| two-component response regulator [Clostridium difficile QCD-76w55] gi|255518116|ref|ZP_05385792.1| two-component response regulator [Clostridium difficile QCD-97b34] gi|255651233|ref|ZP_05398135.1| two-component response regulator [Clostridium difficile QCD-37x79] gi|260684297|ref|YP_003215582.1| two-component response regulator [Clostridium difficile CD196] gi|260687956|ref|YP_003219090.1| two-component response regulator [Clostridium difficile R20291] gi|115251774|emb|CAJ69609.1| Two-component response regulator [Clostridium difficile] gi|260210460|emb|CBA64917.1| two-component response regulator [Clostridium difficile CD196] gi|260213973|emb|CBE06070.1| two-component response regulator [Clostridium difficile R20291] Length = 234 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 47/229 (20%), Positives = 88/229 (38%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD +++ L +G + + E L S + I ++ + Sbjct: 9 ILVADDNPEIREIVEILLTGEGYEVIMATNGEEAVNLVDST---IDLIILDVVMPVKTGF 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 IR + P++ ++ + F +G DD ++KP + E+++RV ++ RR + Sbjct: 66 VACNEIREKTTAPILFLTAKTQDSDKVIGFSAGGDDYLSKPFSYSELISRVKSLLRRYYI 125 Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + V D +D + GE L E IL ++ NR K + + Sbjct: 126 YQGKEKEREPNILKTKELCVNLDTQDVTLNGEPVFLTTIEYSILILMLKNRKKVFSSENL 185 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221 + I+ N + HI LRKKL + + GY ID Sbjct: 186 YETIWDEQYFYTANNTIMVHIRNLRKKLEKDQKNPQYIKTAWGKGYYID 234 >gi|311111737|ref|YP_003982959.1| DNA-binding response regulator [Rothia dentocariosa ATCC 17931] gi|310943231|gb|ADP39525.1| DNA-binding response regulator [Rothia dentocariosa ATCC 17931] Length = 231 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 45/214 (21%), Positives = 93/214 (43%), Gaps = 4/214 (1%) Query: 6 DDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPR 65 DD + + + +G + + D+ ++ L G+ +E+ Sbjct: 12 DDDDALAEMIGIVLAQEGYNAVFCENGSRAFETFMRHSPDLVLLDLML--PGKSGIEVCE 69 Query: 66 IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125 IR+ S VP+I ++ + + ++G DD + KP H E++AR+ A R + Sbjct: 70 QIRSSSNVPIIMLTAKSDTEDVVKGLEAGADDYIAKPFKHLELMARIRARLRPRESRQLV 129 Query: 126 AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAV 185 G + DGR + +G P+ E +L L+ G+ +++ ++ ++G D V Sbjct: 130 VRVGDTIMDMDGRTLKYKGVEVPMTPLEFDLLAALVRRPGQAMSRQELLETVWGYSD--V 187 Query: 186 EENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 +++V H+ +LR K + + + R +GY Sbjct: 188 SDSLVNVHVQRLRAKFTDIGAEQVIQTVRGVGYK 221 >gi|217970660|ref|YP_002355894.1| osmolarity response regulator [Thauera sp. MZ1T] gi|217507987|gb|ACK54998.1| two component transcriptional regulator, winged helix family [Thauera sp. MZ1T] Length = 257 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 46/229 (20%), Positives = 95/229 (41%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A +++ + G S++ + D+ ++ L GE L Sbjct: 9 ILVVDDDARLRELLSRYLQEQGFSVKAVGDAPMMDRALHREHYDLIVLDLML--PGEDGL 66 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R +R A +Q+P+I ++ + + G DD V KP + RE++AR+ A+ RR Sbjct: 67 SICRRLRAAENQIPVIMLTAKGDDVDRIVGLEMGADDYVAKPFNPRELVARIQAVMRRQP 126 Query: 121 VSNNRAETGPIRV--------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + A T + R GE L E +L+ L+ + + +++ + Sbjct: 127 HTLPGAPTPEDEIVAFGRVKVNLGTRVLVRDGEEIQLTTGEFSLLKVLLTHPRQPLSRDK 186 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 + G + V + ++ +S+LRK + + + + GY Sbjct: 187 LMELARGR-EYGVFDRAIDVQVSRLRKLVEDDPAKPRYIQTVWGFGYVF 234 >gi|168185598|ref|ZP_02620233.1| regulatory protein VanR [Clostridium botulinum C str. Eklund] gi|169296235|gb|EDS78368.1| regulatory protein VanR [Clostridium botulinum C str. Eklund] Length = 234 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 41/227 (18%), Positives = 83/227 (36%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + + + S+ ++ + D+ ++ L Sbjct: 5 ILVIEDDIEIANIIRSHLTRQEYSVNWSSTGKEGLEDFRKDEYDLIILDIML--PEIDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + IR S VP++ +S + G DD + KP E+ ARVA +R K Sbjct: 63 AVCKNIRLLSNVPILILSAKKQEVDKVKGLKLGADDYITKPFSLVELEARVANNIKRYKY 122 Query: 122 SNNRAETGPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N + I + + + E L +E +L L N K K +++ Sbjct: 123 YNEKTSNNNIWKYKNGLTIIKDEMKVLIDNEKIELTAKEFSLLIVLAQNENKVFTKKELY 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220 ++ + N + H+ +LR+KL++ + + GY Sbjct: 183 ENVWNQDNLEGN-NTITVHVKELRQKLKDNVKNPKYIQTVWGTGYKF 228 >gi|229493212|ref|ZP_04387004.1| KDP operon transcriptional regulatory protein KdpE [Rhodococcus erythropolis SK121] gi|229319943|gb|EEN85772.1| KDP operon transcriptional regulatory protein KdpE [Rhodococcus erythropolis SK121] Length = 226 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 50/224 (22%), Positives = 88/224 (39%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + G + ++ + DV ++ L Sbjct: 4 ILVVDDEPQILRALRINLSVRGYEVVTASTGAGALRAAAERPPDVVVLDLGL--PDMDGT 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118 E+ +R P+I +S ++ D+G DD V KP E LARV A RR Sbjct: 62 EVLAGLRGWCTAPVIVLSARTDSADKVEALDAGADDYVTKPFGMDEFLARVRAAARRGTS 121 Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 S ET V + +GE L E +LE L+ NRGK V + ++ + Sbjct: 122 AADTSEPSVETASFTVDLAAKTVSRRGEQVHLTPTEWGMLEMLVRNRGKLVGQKELLREV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 +G E + + ++++LR+KL + + ++ +GY Sbjct: 182 WG-PAYDTETHYLRVYLAQLRRKLEDDPANPKHLITEAGMGYRF 224 >gi|254470046|ref|ZP_05083450.1| two component transcriptional regulator, winged helix family [Pseudovibrio sp. JE062] gi|211960357|gb|EEA95553.1| two component transcriptional regulator, winged helix family [Pseudovibrio sp. JE062] Length = 233 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 53/227 (23%), Positives = 104/227 (45%), Gaps = 12/227 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LIDD + ++D G++G + E S D+ ++ GE + Sbjct: 14 ILLIDDDSRIRDLLNRFLGENGFRVTVAKDAEEARRRLSGLEFDLLILDVM--MPGESGI 71 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL + +R VP++ ++ ++ ++ ++GVDD V+KP RE+L R++AI RR Sbjct: 72 ELAKDLRRSKAVPILMLTARSEIEDRIEGLEAGVDDYVSKPFEPRELLLRISAILRRGGP 131 Query: 122 SNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 GP + ++ + + E L RE++IL G+ VA+T + Sbjct: 132 KPKMKLEVLSFGPFQYNAERGELKRNDEHVRLTDREKQILNTFAEKPGQTVARTDLV--- 188 Query: 178 YGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDWN 223 D ++ E ++ +++LR+K+ + + + R +GY + N Sbjct: 189 --GADASLGERTIDVQVNRLRRKIEEDPGNPLYLQTVRGIGYRLITN 233 >gi|146307998|ref|YP_001188463.1| two component transcriptional regulator [Pseudomonas mendocina ymp] gi|145576199|gb|ABP85731.1| two component transcriptional regulator, winged helix family [Pseudomonas mendocina ymp] Length = 225 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 52/223 (23%), Positives = 104/223 (46%), Gaps = 5/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D AL++ ++G ++ + E + S D++ ++ L G + Sbjct: 3 LLVVEDEALLRHHLFTRLSENGHVVDAVRTAEEALYRAESFNHDLALVDLGL--PGMSGI 60 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119 +L R +R P++ ++ + Q ++ G DD + KP E+ AR+ A+ R Sbjct: 61 DLIRQLRSQDKNFPILILTARGNWQDKVEGLSCGADDYLVKPFQFEELEARLNALLRRSS 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + E G + + + + V + L E RILEYLM + + V K ++ +Y Sbjct: 121 GFTKSTIEAGSLVLDLNRKQATVDEQSLQLTAYEYRILEYLMLHHQQVVPKERLMEQLY- 179 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 D+ + NV+E + +LR+KL LG +++ R GY + Sbjct: 180 PGDDERDPNVIEVLVGRLRRKLEAMLGGKLIETVRGQGYMFNE 222 >gi|15613716|ref|NP_242019.1| two-component response regulator [Bacillus halodurans C-125] gi|10173769|dbj|BAB04872.1| two-component response regulator [Bacillus halodurans C-125] Length = 232 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 47/226 (20%), Positives = 93/226 (41%), Gaps = 9/226 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD +++G ++G+++ L+ ED+ + ++ ++ Sbjct: 8 LVVDDDKEIREGITIYLKNEGMNVFQAKDGIEA--LERLNEEDIHLMLLDVMMPRLDGIQ 65 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 IR +P+I +S + G DD V KP + E++ARV + RR Sbjct: 66 TTLKIREARNIPIIFLSAKSEEADKVLGLQVGGDDYVTKPFNPLELIARVKSQLRRYVNL 125 Query: 123 NNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + D ++ + GE L E RI+E LM N G+ + +I+ Sbjct: 126 GTYEQKKQLINLNGITLDLDAKEVKAYGEPVKLTPIEYRIIELLMTNAGRVFSIAEIYER 185 Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 ++ EN V HI K+R+K+ + + +GY ++ Sbjct: 186 VWNEPSFQSSENTVAVHIRKIREKIEIDPSNPRHLKVVWGIGYKME 231 >gi|30264900|ref|NP_847277.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47530386|ref|YP_021735.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49187716|ref|YP_030969.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|49481771|ref|YP_038879.1| DNA-binding response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|65322198|ref|ZP_00395157.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Bacillus anthracis str. A2012] gi|165869737|ref|ZP_02214395.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167634030|ref|ZP_02392353.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|167638007|ref|ZP_02396285.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170685909|ref|ZP_02877132.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|170705536|ref|ZP_02896000.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|177651274|ref|ZP_02934105.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|196033172|ref|ZP_03100585.1| DNA-binding response regulator [Bacillus cereus W] gi|196041444|ref|ZP_03108737.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|196043886|ref|ZP_03111123.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|206977011|ref|ZP_03237912.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217962325|ref|YP_002340897.1| DNA-binding response regulator [Bacillus cereus AH187] gi|218906060|ref|YP_002453894.1| DNA-binding response regulator [Bacillus cereus AH820] gi|222098310|ref|YP_002532367.1| DNA-binding response regulator [Bacillus cereus Q1] gi|225866835|ref|YP_002752213.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|227817627|ref|YP_002817636.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228917487|ref|ZP_04081036.1| DNA-binding response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228929881|ref|ZP_04092896.1| DNA-binding response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228936145|ref|ZP_04098948.1| DNA-binding response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228948581|ref|ZP_04110860.1| DNA-binding response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228988098|ref|ZP_04148197.1| DNA-binding response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229093945|ref|ZP_04225036.1| DNA-binding response regulator [Bacillus cereus Rock3-42] gi|229124398|ref|ZP_04253586.1| DNA-binding response regulator [Bacillus cereus 95/8201] gi|229141576|ref|ZP_04270108.1| DNA-binding response regulator [Bacillus cereus BDRD-ST26] gi|229158457|ref|ZP_04286518.1| DNA-binding response regulator [Bacillus cereus ATCC 4342] gi|229187098|ref|ZP_04314247.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1] gi|229199005|ref|ZP_04325691.1| DNA-binding response regulator [Bacillus cereus m1293] gi|229604112|ref|YP_002869105.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|254687640|ref|ZP_05151496.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254725206|ref|ZP_05186989.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254736944|ref|ZP_05194650.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254741979|ref|ZP_05199666.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254754423|ref|ZP_05206458.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|254757256|ref|ZP_05209283.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|30259575|gb|AAP28763.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47505534|gb|AAT34210.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49181643|gb|AAT57019.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|49333327|gb|AAT63973.1| DNA-binding response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|164714566|gb|EDR20085.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167513824|gb|EDR89192.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|167530831|gb|EDR93533.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170129661|gb|EDS98524.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|170670373|gb|EDT21113.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|172083100|gb|EDT68162.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|195994601|gb|EDX58556.1| DNA-binding response regulator [Bacillus cereus W] gi|196025222|gb|EDX63892.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|196027692|gb|EDX66306.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|206744816|gb|EDZ56222.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217063173|gb|ACJ77423.1| DNA-binding response regulator [Bacillus cereus AH187] gi|218534774|gb|ACK87172.1| DNA-binding response regulator [Bacillus cereus AH820] gi|221242368|gb|ACM15078.1| DNA-binding response regulator [Bacillus cereus Q1] gi|225788218|gb|ACO28435.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|227007195|gb|ACP16938.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228584471|gb|EEK42603.1| DNA-binding response regulator [Bacillus cereus m1293] gi|228596407|gb|EEK54078.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1] gi|228624976|gb|EEK81742.1| DNA-binding response regulator [Bacillus cereus ATCC 4342] gi|228641856|gb|EEK98155.1| DNA-binding response regulator [Bacillus cereus BDRD-ST26] gi|228659050|gb|EEL14702.1| DNA-binding response regulator [Bacillus cereus 95/8201] gi|228689427|gb|EEL43241.1| DNA-binding response regulator [Bacillus cereus Rock3-42] gi|228771596|gb|EEM20063.1| DNA-binding response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228811080|gb|EEM57422.1| DNA-binding response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228823490|gb|EEM69319.1| DNA-binding response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228829797|gb|EEM75419.1| DNA-binding response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228842159|gb|EEM87258.1| DNA-binding response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229268520|gb|ACQ50157.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|324328738|gb|ADY23998.1| DNA-binding response regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 231 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 42/226 (18%), Positives = 91/226 (40%), Gaps = 9/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G + + ++ + + ++ L Sbjct: 4 ILIVEDDPNISSLLQSHIQKYGYEAVVAENFDDIMESFNAVKPHLVLLDVNL--PKFDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 R IR S P+I IS + +SG DD + KP H+ ++A++ RR+ Sbjct: 62 YWCRQIRHESTCPIIFISARAGEMEQIMAIESGADDYITKPFHYDVVMAKIKGQLRRIYG 121 Query: 122 SNNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + I F + + E L ++E + E L++ + ++ + + Sbjct: 122 DYAPNISERIVEVEGLKLFPERPEIHFGSEQVLLTKKEAILAEMLLSKFPRTASREDLLA 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 A++ + VEEN + +I++LRKK + +++ R LGY + Sbjct: 182 ALWD-DESFVEENTLNVNITRLRKKFNELGIENAIETVRGLGYRFN 226 >gi|323482946|ref|ZP_08088344.1| winged helix family Two component transcriptional regulator [Clostridium symbiosum WAL-14163] gi|323691625|ref|ZP_08105888.1| winged helix family Two component transcriptional regulator [Clostridium symbiosum WAL-14673] gi|323403726|gb|EGA96026.1| winged helix family Two component transcriptional regulator [Clostridium symbiosum WAL-14163] gi|323504351|gb|EGB20150.1| winged helix family Two component transcriptional regulator [Clostridium symbiosum WAL-14673] Length = 235 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 43/232 (18%), Positives = 78/232 (33%), Gaps = 15/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D +++G L + + L S D+ ++ G L Sbjct: 6 ILIIEDDEDIREGIRILLESEDYQITEAADGWEGLRLLSDDT-DLVILDIM--MPGISGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI-----------LA 110 + IR S VP++ ++ L +G DD + KP + E+ Sbjct: 63 KTCEEIRKTSFVPVLFLTAKAQESDKLIGLMAGGDDYLTKPFSYAELLGRVKAQLRRYHI 122 Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + + E+G R+ D + V G L E IL +M + + Sbjct: 123 YRGKEDEASQPEEHFIESGRFRINEDFNEVYVDGTEVNLSDIEYHILLIMMQYPKRIFSA 182 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 ++ +I+ V HI LRKK+ + + GY D Sbjct: 183 QNLYESIWSEPYFYSCNATVMVHIRNLRKKVEKNPQNPVSITTVWGKGYRFD 234 >gi|306823058|ref|ZP_07456434.1| response regulator [Bifidobacterium dentium ATCC 27679] gi|309801315|ref|ZP_07695444.1| DNA-binding response regulator MtrA [Bifidobacterium dentium JCVIHMP022] gi|304553690|gb|EFM41601.1| response regulator [Bifidobacterium dentium ATCC 27679] gi|308222204|gb|EFO78487.1| DNA-binding response regulator MtrA [Bifidobacterium dentium JCVIHMP022] Length = 240 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 40/228 (17%), Positives = 83/228 (36%), Gaps = 16/228 (7%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + +G + + + R D+ ++ L LE Sbjct: 16 LVVEDEPTLATAIAQRITAEGWTARVASDGASAVQAATQLRPDLVIMDIML--PVMDGLE 73 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA--------- 113 + I A VP++ ++ + +G DD + KP RE++AR Sbjct: 74 ATKRIVAERPVPVLILTARDDEADKVIGLGAGADDYMTKPFSMRELIARCKALLRRVDRA 133 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + + + G + + R V GE L E +L L + + ++ Sbjct: 134 KVIAKNSENEKILDFGSLVIDPAQRIVTVNGEQVHLTPTEFDLLATLARKPKSVLTREKL 193 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ D + V+SH+ LR KL G + + +GY+ + Sbjct: 194 LEEVWDWVDASG-TRTVDSHVKALRHKL----GSQTIRTVHGVGYAFE 236 >gi|281492173|ref|YP_003354153.1| Two-component system regulator [Lactococcus lactis subsp. lactis KF147] gi|281375844|gb|ADA65338.1| Two-component system regulator [Lactococcus lactis subsp. lactis KF147] Length = 230 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 48/224 (21%), Positives = 84/224 (37%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + +G + E ++ SS D+ ++ L Sbjct: 6 ILIIEDEKNLARFVSLELEHEGYATEIKDNGRSGLEEASSKDYDLILLDLML--PELDGF 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAIY 116 E+ R +R P+I ++ S + D G DD + KP R + Sbjct: 64 EVARRLRKEKDTPIIMMTARDSTMDRVAGLDIGADDYITKPFAIEELLARVRAFFRREEH 123 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + R +V L RRE +L LM N G V + + S Sbjct: 124 GHAVERAENTSFRDLVIDKTNRTVHRGKKVIDLTRREYDLLLTLMQNVGDVVTREHLVSQ 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G ++E E NVV+ +I LR K+ + + + R LGY + Sbjct: 184 VWG-YEEGTETNVVDVYIRYLRNKIDVEGQDSYIQTVRGLGYVM 226 >gi|218297199|ref|ZP_03497861.1| two component transcriptional regulator, winged helix family [Thermus aquaticus Y51MC23] gi|218242476|gb|EED09015.1| two component transcriptional regulator, winged helix family [Thermus aquaticus Y51MC23] Length = 223 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 43/221 (19%), Positives = 83/221 (37%), Gaps = 9/221 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D V+ G G + S E L A ++ L GE + Sbjct: 5 LVVEDEPAVRLGVRLALERAGHRVLEAESAEAAWPLLKEAE--AVVLDWML--PGEPGTK 60 Query: 63 LPRIIRAHSQV--PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L +R P++ ++ ++ ++ G DD E L R Sbjct: 61 LLERMRQGPYPSLPVLMLTARAEVRDRVEGLSRGADDY-LAKPFATEELLARLEALLRRA 119 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 GP+ + + + ++ PL RRE +L +L G+ + ++ A++G Sbjct: 120 GKRKVLRRGPLLLDLERMEATLEDRPLPLSRREFELLAFLAERPGRVYTREELLEAVWG- 178 Query: 181 FDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220 D V+ HI +LR+KL + +++ R +GY Sbjct: 179 PDYLGTPRTVDQHILQLREKLGEDPKAPRFLETVRGVGYRF 219 >gi|194292202|ref|YP_002008109.1| response regulator in two-component regulatory system, regulation of heavy metal resistance operon czccba [Cupriavidus taiwanensis LMG 19424] gi|193226106|emb|CAQ72053.1| response regulator in two-component regulatory system, regulation of heavy metal resistance operon czcCBA [Cupriavidus taiwanensis LMG 19424] Length = 229 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 43/221 (19%), Positives = 90/221 (40%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D D + G ++ D+ ++ L G Sbjct: 3 ILIVEDEPKAGDYLHKGLTESGFVVDLARDGADGLAHAREHPYDLIVLDVML--PGLDGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120 E+ R +R P++ ++ L L + G DD + KP E++ R+ I R Sbjct: 61 EVLRELRRERDTPVLFLTARDELSDRLKGLELGADDYMVKPFAFAELVLRIRTILRRGPL 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + E +++ + R G+ L +E +L L RG+ ++++ I S ++ + Sbjct: 121 RESEFIEVADLQIDAIRRRVVRAGQKIDLTSKEFALLYLLARRRGEVLSRSLIASQVWDV 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + NVV+ I +LR K+ + + ++R +GY +D Sbjct: 181 -NFDSNTNVVDVSIRRLRAKVDDPFPRKLIHTRRGMGYVLD 220 >gi|168185636|ref|ZP_02620271.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Clostridium botulinum C str. Eklund] gi|169296321|gb|EDS78454.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Clostridium botulinum C str. Eklund] Length = 227 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 48/230 (20%), Positives = 93/230 (40%), Gaps = 14/230 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L+DD + + + + + L + D+ ++ L Sbjct: 3 ILLVDDEESLLNLVKINLMFENYEVITAECGKDAVELFQTQSPDLVVLDLML--PDIDGF 60 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118 ++ I+ +S++P++ +S + L G DD + KP RE++ R+ AI RR Sbjct: 61 QVIHEIQEINSEIPIVVLSAKNQINDRLLGLQLGADDYITKPFDSRELILRIRAISRRIN 120 Query: 119 ------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 K N E G I++ D R + + E IL ++ N K + + Sbjct: 121 KAKLLSNKKQVNIIEKGFIKIMKDERRVFIDSKEVIFTHIEFEILVLMVKNSYKVFTREE 180 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + I+G +D + V+ HI ++RKKL + D + + +GY + Sbjct: 181 LLDTIWG-YDFSGNTRAVDIHIKRIRKKLLDH--EDAIKTIYGVGYRFEV 227 >gi|166710916|ref|ZP_02242123.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzicola BLS256] Length = 229 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 44/222 (19%), Positives = 82/222 (36%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +++DD ++D + + D+ ++ L G G + Sbjct: 5 ILIVDDEPAIRDMVAFALRKGEFEPIHACDAREAQTAIADRLPDLILLDWMLPGTSGLDL 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118 R + ++P+I ++ + ++GVDD V KP RE+ R R Sbjct: 65 ARRWRKEQLTREIPIIMLTARGEENDRVGGLEAGVDDYVVKPFSARELLARIRAVMRRTR 124 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + G +R+ P+ E R+L + M + + +TQ+ ++ Sbjct: 125 EDDEDGSVAVGRLRIDGAAHRVFAGDAPVPIGPTEYRLLHFFMTHPERVYTRTQLLDHVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G VEE ++ HI +LRK L + V + R GY Sbjct: 185 GGSVY-VEERTIDVHIRRLRKTLEPFDLENMVQTVRGSGYRF 225 >gi|153839375|ref|ZP_01992042.1| transcriptional activator protein CopR [Vibrio parahaemolyticus AQ3810] gi|149747097|gb|EDM58085.1| transcriptional activator protein CopR [Vibrio parahaemolyticus AQ3810] Length = 230 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 37/227 (16%), Positives = 89/227 (39%), Gaps = 9/227 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G ++ + + +S D+ ++ L Sbjct: 3 ILIVEDEHKAGEYLQKGLIESGYVVDLVHDGVDGLYHATSEEYDLILLDIML--PKLDGW 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAI 115 ++ +R+ P+I ++ ++ + F+ G +D V KP R I Sbjct: 61 QVLNTLRSSGINTPVIMLTAKEQVEDRVRGFELGANDYVVKPYAFAELLARVQNVFRHHI 120 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 ++ S + + R G+ L +E +LE LM G+ +++T I S Sbjct: 121 AAQVVASPQTLRVADLELDMIKRVATRAGQSMSLTAKEYALLELLMRKTGQVLSRTTIAS 180 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 ++ + + + NV++ + +LR K+ + + R +GY ++ Sbjct: 181 LVWDM-NFDSDTNVIDVAVKRLRSKVDKPFDRPLIHTVRGMGYKLEE 226 >gi|152998342|ref|YP_001343177.1| two component transcriptional regulator [Marinomonas sp. MWYL1] gi|150839266|gb|ABR73242.1| two component transcriptional regulator, winged helix family [Marinomonas sp. MWYL1] Length = 244 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 40/230 (17%), Positives = 86/230 (37%), Gaps = 14/230 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARE-DVSAIEAFLIGKGEKV 60 ++DD ++ ++ +S E + +E D+ ++ L G+ Sbjct: 7 IYVVDDDDEIRTLLKTYLEKHQFTVLTADSGETFLANFRAEQEVDLVILDIML--PGQDG 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILAR 111 + R +R SQVP+I ++ + + G DD + KP + RE Sbjct: 65 FAVCRSLRTQSQVPVIMLTANSDEMDRIIGLEIGADDYLAKPFNPRELLARIKAILRRME 124 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + V++ + + R+ + E L + +L + + G + + Sbjct: 125 HTEVVEIAPVTHRFYRFAQFTLDTLSRELYFKDEKESLSGADYNLLMLFLTHPGAVLTRE 184 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220 I G D A + ++ H+S+LR++L + + + R GY + Sbjct: 185 LIAENTRGR-DSAPLDRFIDVHVSRLRQRLREDARQPQLIKTIRGQGYIL 233 >gi|70730512|ref|YP_260253.1| DNA-binding heavy metal response regulator [Pseudomonas fluorescens Pf-5] gi|68344811|gb|AAY92417.1| DNA-binding heavy metal response regulator [Pseudomonas fluorescens Pf-5] Length = 224 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 40/222 (18%), Positives = 89/222 (40%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D D + G ++ N+ L ++ ++ L G+ Sbjct: 3 ILVIEDEPKTADYLHQGLSESGYVVDRANNGVDGLHLIQQQPYELVILDINL--PGKDGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119 ++ ++ + ++ ++ L+ + D G DD + KP E+ R + Sbjct: 61 QVLEQLQGNYPARVMMLTARGRLEDKVKGLDMGADDYLVKPFQFPELLARVRTLMRRSEV 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 V + +++ L +E +L LM + G+ + +TQI S ++ Sbjct: 121 IVQPEVLQVADLQLDPRRHRAYRGSRRIDLTTKEFTLLHVLMRHSGEVLTRTQIISLVWD 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + + NVVE IS+LR K+ + + + R +GY ++ Sbjct: 181 M-NFDCDTNVVEVSISRLRGKIDDASDVKLIHTLRGVGYVLE 221 >gi|317489022|ref|ZP_07947549.1| response regulator receiver domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|316911889|gb|EFV33471.1| response regulator receiver domain-containing protein [Eggerthella sp. 1_3_56FAA] Length = 243 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 49/222 (22%), Positives = 85/222 (38%), Gaps = 8/222 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + F G + D+ ++ + Sbjct: 23 LLVVDDEPEIVALLDEYFTGLGYRVLTAEDGATALKRA-EQSPDLIVLDVGMPL--MDGY 79 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI---YRR 118 + R +R H P++ ++ + L+ F++G DD V KP + ARV A R Sbjct: 80 AVCRRLREHLTCPILFLTAHVEDVDALEGFEAGADDYVLKPFSLAVLGARVKAHLARDNR 139 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 V G I + R G L RRE I+ +L + G+ + +I + Sbjct: 140 QHVRAEVRFDGDIAIDYRSRTVTAAGRPVELTRREFDIVAFLSKHPGQVFDRDRIHERV- 198 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYS 219 G ++ + VV HI ++RKKL DPV++ +GY Sbjct: 199 GGWENESDSQVVTEHIRRIRKKLAAAGAEPDPVETVWGMGYR 240 >gi|315105932|gb|EFT77908.1| response regulator receiver domain protein [Propionibacterium acnes HL030PA1] Length = 236 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 36/224 (16%), Positives = 79/224 (35%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + +G S + R + ++ L G + Sbjct: 10 ILVVDDDTALAEMLQLVLIKEGFSTAWVGHGSDVMDVFREHRPALVLLDLML--PGRDGI 67 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH---REILARVAAIYRR 118 + + IR S VP+I ++ + +G DD V KP + Sbjct: 68 RICQDIRRESGVPIIMLTARTDTPNVVQGLGAGADDYVCKPFRSAELIARIRARLRTPVS 127 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + G + + ++ GE L E +L + + ++ + ++ Sbjct: 128 RREEGEVITVGDLTIDPVAHLVQLGGEEISLTPLEYSLLVTMAQYPNRVFSRETLLREVW 187 Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 G + + +V H+ +LR K+ N + + R +GY I+ Sbjct: 188 G-YTNITDTRLVNVHVQRLRSKVERNADHPQMIVTVRGIGYRIN 230 >gi|311897138|dbj|BAJ29546.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 225 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 47/220 (21%), Positives = 89/220 (40%), Gaps = 5/220 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + +G +++ + E WL + DV ++ L Sbjct: 4 LVVEDERRLAATLQRGLRAEGFAVDLAHDGEEGLWLATEHDYDVIVLDIML--PRLNGYR 61 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + +RA P++ ++ + D+G DD ++KP + ++AR+ A+ RR Sbjct: 62 VCSRLRAAGDDTPILMLTAKDGELDEAEALDTGADDFLSKPFSYVVLVARLRALVRRTGR 121 Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + R G L RE +LE L G V+K +I +++ Sbjct: 122 RLPQTLEFGDLAIDPARRTCTRAGVEVRLTTREFAVLECLARAAGGVVSKREILESVWDA 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + N+VE HIS LR+K+ V + R GY + Sbjct: 182 A-FDGDPNIVEVHISALRRKIDAPFARTSVGTVRGAGYRL 220 >gi|308273635|emb|CBX30237.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [uncultured Desulfobacterium sp.] Length = 242 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 52/226 (23%), Positives = 90/226 (39%), Gaps = 11/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +++DD + + DG +++ S E L S D+ ++ L G G V Sbjct: 17 ILVVDDEEDITELIRYNLASDGYTVKCAYSGEEAVKLAMSEPFDLIVLDLMLPGIGGIDV 76 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH------REILARVAA 114 + R + +P+I ++ S +T + + DD V KP + R Sbjct: 77 AKRLRSVHNTINIPIIMLTA-KSEETDIISGLTLADDYVTKPFSPKILSARISAILRRIN 135 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + G I + + R EV GE L E +IL L G +++QI Sbjct: 136 DSSDDASDDKIIKRGDIVIHTGRRRVEVCGEPVELSFSEFQILIMLSKRPGWVFSRSQIV 195 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G D V + V+ I LRKKL + +++ R +GY Sbjct: 196 DTVHGE-DYPVTDRSVDVQIVGLRKKLGSCG--RYIETVRSVGYRF 238 >gi|229072342|ref|ZP_04205546.1| DNA-binding response regulator [Bacillus cereus F65185] gi|228710767|gb|EEL62738.1| DNA-binding response regulator [Bacillus cereus F65185] Length = 231 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 42/226 (18%), Positives = 91/226 (40%), Gaps = 9/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G + + ++ + + ++ L Sbjct: 4 ILIVEDDPNISSLLQSHIQKYGYEAVVAENFDDIMESFNAVKPHLVLLDVNL--PKFDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 R IR S P+I IS + +SG DD + KP H+ ++A++ RR+ Sbjct: 62 YWCRQIRHESTCPIIFISARAGEMEQIMAIESGADDYITKPFHYDVVMAKIKGQLRRIYG 121 Query: 122 SNNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + I F + + E L ++E + E L++ + ++ + + Sbjct: 122 DYAPNISERIVEVEGLKLFPERPEIHFGSEQVLLTKKEAILAEMLLSKFPRTASREDLLA 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 A++ + VEEN + +I++LRKK + +++ R LGY + Sbjct: 182 ALWD-DESFVEENTLNVNITRLRKKFNELGIENSIETVRGLGYRFN 226 >gi|184154583|ref|YP_001842923.1| two-component response regulator [Lactobacillus fermentum IFO 3956] gi|183225927|dbj|BAG26443.1| two-component response regulator [Lactobacillus fermentum IFO 3956] Length = 229 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 41/227 (18%), Positives = 91/227 (40%), Gaps = 9/227 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + ++G + + ++ D+S + L+ + Sbjct: 3 ILIVDDDKEIVQLLEIYARNEGYEPLTAYNGKDAITKLNTM-PDISLVILDLMMPEMNGM 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R +R S +P++ +S + + +G DD V KP + E++ARV ++ RR + Sbjct: 62 DVIRQVRKDSSIPILVLSAKTADMDKIQGLVTGADDYVTKPFNPLEVMARVKSLLRRSEN 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQG------EVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + V + + + L E IL L ++ + + IF Sbjct: 122 QVTNDKPDVLNVGPLVINKDSHEVKTLKGDPIQLTALEFGILYLLASHPNRVFSADDIFE 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221 ++ + V V H+S LR K+ G +++ +GY ++ Sbjct: 182 RVW-QQESVVSAKTVMVHVSHLRDKIEAATGGEKVIETVWGVGYKVE 227 >gi|110801905|ref|YP_697561.1| DNA-binding response regulator [Clostridium perfringens SM101] gi|110682406|gb|ABG85776.1| DNA-binding response regulator [Clostridium perfringens SM101] Length = 223 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 41/225 (18%), Positives = 85/225 (37%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +G + L R D+ ++A L Sbjct: 3 ILVVDDEVSILQLIKMNLEIEGHIPITAENALDALELVIKERPDIIILDAML--PDISGF 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L I+ +P+I ++ + L G DD + KP + E++ R+ + + + Sbjct: 61 NLIPKIKNIDDIPIIMLTAKSDINDKLLGLQLGADDYITKPFNSTELILRINIVGKHISS 120 Query: 122 SNNRAETGPIRVF----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + D R ++ E L +E +L L N+ K ++ ++ + + Sbjct: 121 DSKKKVKDLTIGDLTLLLDERKALIKSEYINLTFKEFEVLRCLCQNKNKVFSREELLNKV 180 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +G +D V+ I +LRKKL + + + GY +D Sbjct: 181 WG-YDFEGTTRAVDILIQRLRKKLG--PCQNYIKTLYKAGYKLDE 222 >gi|78221749|ref|YP_383496.1| two component heavy metal response transcriptional regulator [Geobacter metallireducens GS-15] gi|78193004|gb|ABB30771.1| two component heavy metal response transcriptional regulator, winged helix family [Geobacter metallireducens GS-15] Length = 223 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 44/222 (19%), Positives = 91/222 (40%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D F ++G S + + E L + D+ ++ L G Sbjct: 3 ILIIEDEKKAAAYLQKGFTENGFSADTAQNGEDGLHLARTEAYDLVILDIML--PGRDGW 60 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-ILARVAAIYRRL 119 + +R S+VP+I +S ++Q + + G DD + KP E + + R Sbjct: 61 SVLEELRRGGSEVPVIYLSARDAVQDRVRGLELGADDYLVKPFAFSELLARARNILRRGP 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 R + + G G L +E +L L+ +G+ +++ I ++G Sbjct: 121 ARQPERLRVDDLEMDLVGHKAWRGGTPLDLTTKEFLLLSLLLRRKGEVLSRALIADQVWG 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + + N+V+ I +LR+K+ + + + R GY +D Sbjct: 181 I-NFDSDTNIVDVAIRRLRRKVDDPFERKLISTVRGAGYVLD 221 >gi|56751418|ref|YP_172119.1| two-component response regulator for energy transfer from phycobilisomes to photosystems [Synechococcus elongatus PCC 6301] gi|56686377|dbj|BAD79599.1| two-component response regulator for energy transfer from phycobilisomes to photosystems [Synechococcus elongatus PCC 6301] Length = 249 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 46/228 (20%), Positives = 90/228 (39%), Gaps = 9/228 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++IDD + + + G + + L D+ ++ L G V Sbjct: 5 ILVIDDDSAILELVAVNLEMSGYDVRKAEDGIKGQALAVQLVPDLIMLDLMLPRVDGFTV 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R +++P++ ++ Q ++ F++G DD + KP E+LARV A+ RR Sbjct: 65 CQRLRRDERTAEIPVLMLTALGQTQDKVEGFNAGADDYLTKPFEVEEMLARVRALLRRTD 124 Query: 121 VSNNRAETGPIRVF------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + A I + + + L E +L L+ G+ VA ++I Sbjct: 125 RIPHAARHSEILSYGPLTLIPERFEAIWFNRTVKLTHLEFELLHCLLQRHGQTVAPSEIL 184 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 ++G +D + + HI LR KL + + + GY ++ Sbjct: 185 KEVWG-YDPDDDIETIRVHIRHLRTKLEPDPRHPRYIKTVYGAGYCLE 231 >gi|292670066|ref|ZP_06603492.1| DNA-binding response regulator [Selenomonas noxia ATCC 43541] gi|292648254|gb|EFF66226.1| DNA-binding response regulator [Selenomonas noxia ATCC 43541] Length = 234 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 55/221 (24%), Positives = 101/221 (45%), Gaps = 7/221 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + +G E + D+ ++ L G +E Sbjct: 14 LIVEDETRIARFLQMELEHEGFEAETEGNGTRAYERIIQENFDIILLDVML--PGMDGIE 71 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +RA + VP+I ++ +++ ++ D G DD + KP E++AR+ RR +S Sbjct: 72 ICRRVRAVTNVPIIMLTAKDAVEDRVEGLDIGADDYITKPFAVPELIARLKNALRRRDIS 131 Query: 123 NNRAETG----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 A + +F + +V GE L +RE +LEYL+ N+ + + QI ++ Sbjct: 132 TEDASDRLTVKNLIMFLSRYEVQVDGETVALTKREYDLLEYLLRNKRTVLTRDQILQEVW 191 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 G FD E NVV+ +I LR KL ++ + + R +GY Sbjct: 192 G-FDYTGETNVVDVYIRYLRAKLDDRFNKKYIYTVRGVGYV 231 >gi|154247445|ref|YP_001418403.1| two component transcriptional regulator [Xanthobacter autotrophicus Py2] gi|154161530|gb|ABS68746.1| two component transcriptional regulator, winged helix family [Xanthobacter autotrophicus Py2] Length = 238 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 43/221 (19%), Positives = 87/221 (39%), Gaps = 6/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + F + G ++ E L + DV ++ L + L Sbjct: 15 LLLVEDDRDAAEYLRKAFREAGHVVDLAADGEEGLALALDGKYDVMVVDRMLPAR--DGL 72 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118 L +R P++ +S + + +G DD + KP E+ + Sbjct: 73 SLVTELRGRGHTTPVLILSALGQVDDRVQGLRAGGDDYLPKPYAFTELLARVEALSRRGV 132 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + + + + G+ PL RE R+LEYL+ + G+ V +T + ++ Sbjct: 133 SQGAETVYKVSDLELDRLAHRVTRSGKEIPLQPREFRLLEYLLRHAGQVVTRTMLLENVW 192 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 + + NV++ H+S+LR K+ + + R GY Sbjct: 193 D-YHFDPQTNVIDVHVSRLRSKIDKGFDVPLIHTVRGAGYM 232 >gi|330831451|ref|YP_004394403.1| two-component system, regulatory protein [Aeromonas veronii B565] gi|328806587|gb|AEB51786.1| Two-component system, regulatory protein [Aeromonas veronii B565] Length = 218 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 52/223 (23%), Positives = 99/223 (44%), Gaps = 9/223 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++ G + + +L + D ++ L G L Sbjct: 3 ILIVEDEKILAGQLAEQLRLSGFVTDLCHDGNEAGFLGETEPYDAIILDLGL--PGRDGL 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119 + + R+ P++ ++ L ++ ++G DD + KP E++ARV A + R Sbjct: 61 SVLKEWRSKGIDTPVLVLTARGQLHEKIEGLNAGADDYLTKPFQVAELVARVHALVRRAA 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +++ E G +R+ +G L E R+L YLM +RGK V+++++ IY Sbjct: 121 GNASSILEIGGVRLDMAASQVWYEGTPIKLTAHEFRVLGYLMQHRGKVVSRSELIDHIY- 179 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 D + N VE I ++RKK D +++ R LGY I+ Sbjct: 180 AQDFDRDSNTVEVFIGRIRKK----TNPDLIETVRGLGYRINE 218 >gi|327440162|dbj|BAK16527.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Solibacillus silvestris StLB046] Length = 223 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 48/221 (21%), Positives = 89/221 (40%), Gaps = 6/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + + L S + D ++ L + Sbjct: 5 ILIIEDEKNIARFLELELKHEQFETVVAYDGRTGLELAESEQFDCILLDVML--PQLNGI 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119 E+ R IR S VP++ I+ + + D+G DD V KP E+ R + Sbjct: 63 EVCRRIRKTSNVPILLITARDEVMDRVSGLDAGADDYVVKPFAIEELLARIRSILRRVQP 122 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + + + D + + L R+E +L+ L+ NR + +I ++G Sbjct: 123 AQKSKQLILRELEIDVDAYEVIFENNKIELTRKEFDLLKLLVENRNLVCTRERILEEVWG 182 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 FD VE NVV+ +I LR KL+ + +++ R +GY + Sbjct: 183 -FDTEVETNVVDVYIRHLRTKLQTEHTP-YIETVRGVGYVM 221 >gi|270264908|ref|ZP_06193172.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270041206|gb|EFA14306.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 231 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 54/222 (24%), Positives = 93/222 (41%), Gaps = 10/222 (4%) Query: 4 LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63 L++D + D I +G + F E + + ++ L EL Sbjct: 7 LVEDEPSIADTLIYTLESEGFQVRWFERGEPALQALAQGAPALVILDVGL--PDINGFEL 64 Query: 64 PRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 R + + S P++ ++ L + G DD V KP RE+ ARV I RRL+ Sbjct: 65 CRRLLSQSADLPILFLTARSDEVDRLIGLEIGADDYVAKPFSPREVSARVRTILRRLQKQ 124 Query: 123 NNR-----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 GP + G + PL R E +L+ L+ G+ ++ Q+ ++ Sbjct: 125 QRLQQPALYTFGPFDLDEPGAILYYHQQPLPLTRYEFLLLKTLLLAPGRVFSRQQLMDSV 184 Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGY 218 + +E+++ V++HI LR KLR G P+ + R +GY Sbjct: 185 WAQAEESLD-RTVDTHIKTLRAKLRAIDPGEPPIHTHRGMGY 225 >gi|320012873|gb|ADW07723.1| two component transcriptional regulator, winged helix family [Streptomyces flavogriseus ATCC 33331] Length = 244 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 44/235 (18%), Positives = 85/235 (36%), Gaps = 20/235 (8%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++ +D + DG + + + D+ ++ L G LE Sbjct: 6 LVAEDDRKQAELIRRYLAHDGHEVSVVHDGRTALGEATRRPPDLLVLDWML--PGLDGLE 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +R ++P++ ++ + L D G DD + KP RE++AR+ + RR + S Sbjct: 64 VCRRLRGAGELPILMLTARSTEDDLLRGLDLGADDYMTKPFRPRELVARIRTLLRRSRPS 123 Query: 123 NNRAETGPIRV----------------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166 A + + V E RIL + A+ + Sbjct: 124 AGPATVAAVSPAAPESPAVLTVGGLTVNAAQHQVFVHDRPVNCTPGEFRILSAMAASPDR 183 Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++Q+ + V E V+ HI LRKK+ + + + +GY + Sbjct: 184 VFTRSQLLDCLTD-HGRPVSERTVDVHILNLRKKIETSPRRPQHLLTVHGIGYKL 237 >gi|227529760|ref|ZP_03959809.1| response regulator [Lactobacillus vaginalis ATCC 49540] gi|227350244|gb|EEJ40535.1| response regulator [Lactobacillus vaginalis ATCC 49540] Length = 229 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 41/227 (18%), Positives = 87/227 (38%), Gaps = 9/227 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + ++G + ++ D+ I L+ + Sbjct: 3 ILVVDDDKEIVQLLEIYIRNEGYEPVTAYDGKEALTKLNTN-PDIGLIILDLMMPEMDGM 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + +R S +P++ +S + + SG DD V KP + E++ARV ++ RR + Sbjct: 62 QVIKQVRKDSDIPILVLSAKTADMDKIQGLISGADDYVTKPFNPLEVMARVKSLLRRSQG 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQG------EVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + V + + + L E IL L ++ + + IF Sbjct: 122 EVTNDTPDILNVGPLTINKDSHEVKTIKGDTIQLTALEFGILYLLASHPNRVFSADDIFE 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 ++ + V V H+S LR K+ G + + +GY ++ Sbjct: 182 RVW-QQESVVSAKTVMVHVSHLRDKIEEATNGEKVIQTVLGVGYKVE 227 >gi|154509392|ref|ZP_02045034.1| hypothetical protein ACTODO_01923 [Actinomyces odontolyticus ATCC 17982] gi|153799026|gb|EDN81446.1| hypothetical protein ACTODO_01923 [Actinomyces odontolyticus ATCC 17982] Length = 219 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 53/222 (23%), Positives = 95/222 (42%), Gaps = 10/222 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A + G E +++ R + ++ L Sbjct: 4 ILIVEDEARIAAFVAKGLRAAGFVPEIYSTGSEAVEAALQGRGALMLLDVGL--PDIDGF 61 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ IR +P+I ++ S+ + + G DD V KP E+LARV R Sbjct: 62 EVLEQIRGQGVGMPVIMLTARSSVADRVAGLEGGADDYVPKPFSFEELLARVRLRLREET 121 Query: 121 VSN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++ G + + R V E L RE +LE M N G+ +++ Q+ SA++ Sbjct: 122 STSSAMTLTRGSLVLDLKTRRARVGAEWVDLSAREFTLLETFMRNPGQVLSREQLLSAVW 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G+ D NVV+ ++S LR+K+ G D ++ R +GY + Sbjct: 182 GI-DFDGASNVVDVYLSYLRQKI----GKDYFETVRGMGYRL 218 >gi|221068535|ref|ZP_03544640.1| two component transcriptional regulator, winged helix family [Comamonas testosteroni KF-1] gi|220713558|gb|EED68926.1| two component transcriptional regulator, winged helix family [Comamonas testosteroni KF-1] Length = 223 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 56/221 (25%), Positives = 102/221 (46%), Gaps = 9/221 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D +++ G ++E E ++L D + ++ L L Sbjct: 3 ILLIEDEPTLREQLHQALLQAGHTVETAADGETAQYLGEVESFDAAVLDLGL--PVRDGL 60 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119 + R RA + +P++ ++ + + D+G DD + KP H E+LAR+ A+ RRL Sbjct: 61 SVLRAWRAQGRSMPVLILTARAAWHEKVAGMDAGADDYLAKPFHMEELLARLRALLRRLS 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++ + G I + S V+G+ L E ++L LM G V++T++ IY Sbjct: 121 PHASALWQCGAITLDSRQARVTVEGQALTLTSHEFKVLALLMQRMGAVVSRTELSEHIY- 179 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D + N +E + +LRKKL +++ R LGY + Sbjct: 180 PQDSDRDSNTIEVFVGRLRKKLPAGS----IETVRGLGYRL 216 >gi|311899558|dbj|BAJ31966.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 245 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 45/221 (20%), Positives = 88/221 (39%), Gaps = 4/221 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDV-SAIEAFLIGKGEKVL 61 +++DD A ++ G +E + D + + G Sbjct: 6 LVVDDDAAIRRSLERGLRLSGFRVEVAADGAQALSRLAGDAPDPPDVLVLDVGMPGLSGT 65 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ R +RA P++ +S L + +G DD + KP E++ R+ A+ RR Sbjct: 66 DVCRTLRARADDTPVLMLSALDELADRVAGLQAGADDYLVKPFALEELVLRLHALLRRRP 125 Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 R+ + R + + L RRE +L L N G +++ + ++G Sbjct: 126 PQPTDLIRVGPLRIHPETRQAFWEEDELRLTRREFELLAQLARNAGLVLSREVLLDRVWG 185 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D V + V++ +S LR+KL V + R +G+ + Sbjct: 186 -YDFEVRSDAVDTFVSYLRRKLEAGGRPRTVHTVRGVGFVL 225 >gi|169350089|ref|ZP_02867027.1| hypothetical protein CLOSPI_00831 [Clostridium spiroforme DSM 1552] gi|169293302|gb|EDS75435.1| hypothetical protein CLOSPI_00831 [Clostridium spiroforme DSM 1552] Length = 235 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 42/234 (17%), Positives = 88/234 (37%), Gaps = 17/234 (7%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++D + G + + + + S ++ ++ + Sbjct: 5 ILIVEDEMGIRDTVSVFLKNQGYKVYTATNGQEGLEVVSKHEIHLAIVDIM--MPVMDGI 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + +R P+I +S + + G DD V KP E++ARV RR + Sbjct: 63 TMTMKLRQKYDFPIIFLSAKSEDIDKITGLNIGGDDYVTKPFEPMELVARVNTNIRRYEQ 122 Query: 122 SNNRAETGPIRV------------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 ++ + L +E +ILE LM+ G+ + Sbjct: 123 IIKLKNMTTNDNAQHKLVVGGLELDKYTKEVSANNKTVRLTAKEFQILELLMSYPGRVYS 182 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 +I+ A++ +EA+ + HI KLR+K+ N + + +GY I+ Sbjct: 183 AEEIYQAVW--KEEAINTETIMVHIRKLREKIEINPKKPEYLKVVWGIGYKIEK 234 >gi|126651878|ref|ZP_01724079.1| two-component response regulator [Bacillus sp. B14905] gi|126591346|gb|EAZ85454.1| two-component response regulator [Bacillus sp. B14905] Length = 256 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 41/232 (17%), Positives = 94/232 (40%), Gaps = 16/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +L+DD + + D + +G ++ ++ + + D+ ++ L Sbjct: 21 ILLVDDESAILDMLQMVLTKEGFRQIDRASTAQEALNACNKKPYDMILLDVML--PDRSG 78 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----------REIL 109 ++ IR ++ P++ I+ S L F G DD + KP + R + Sbjct: 79 FDICPFIRETTEAPILFITAKNSDLEKLTGFAMGGDDYITKPFNPLEIVARMKAQLRRVK 138 Query: 110 ARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 L + + G +V + V G+V P + ++L + + + Sbjct: 139 LYEEERPLHLSSNMFIYDFGRFQVNERAGELMVDGQVISCPAQVYQLLLFFCKHPNQIFT 198 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 K+Q++ A++G ++N V HI ++R+++ + + + + R LGY + Sbjct: 199 KSQLYEAVWGDH-SFGDDNTVTVHIGRIRERIEKDPKDPELLLTIRGLGYKL 249 >gi|306826127|ref|ZP_07459462.1| DNA-binding response regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304431603|gb|EFM34584.1| DNA-binding response regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 217 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 47/219 (21%), Positives = 96/219 (43%), Gaps = 6/219 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++++G A ++G + + L+ + + L+ Sbjct: 3 ILVVDDEDMIREGVAAFLREEGYHVILAKDGQEA--LEKFHEFPIHLMVLDLMLPKRSGF 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + I + +P+I +S +T + FD DD V KP ++ R+ A+ RR V Sbjct: 61 EVLKEINGNHDIPVIVLSALGDEETQMQVFDLYADDHVTKPFSLVLLVKRIQALLRRYYV 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + V V+ E + +E +L+ L+ ++ + +++ QI +I F Sbjct: 121 VEDIWHYQDVTVDFTSYQARVKNEEVAIKPKELLVLKCLIQHKNQVLSREQILESISNDF 180 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + VV+ +I LRKKL D + + + GY I Sbjct: 181 ADLPLDRVVDVYIRNLRKKLDL----DCIVTVKNAGYKI 215 >gi|262165983|ref|ZP_06033720.1| putative two-component response regulator [Vibrio mimicus VM223] gi|262025699|gb|EEY44367.1| putative two-component response regulator [Vibrio mimicus VM223] Length = 236 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 41/226 (18%), Positives = 78/226 (34%), Gaps = 11/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ G G + + L + D+ ++ G+ Sbjct: 7 ILVVDDNQELREALKDYLGKAGFEVICAENGAVMWKLLETHNPDLIILDIM--MPGDDGF 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-------ILARVAA 114 L + +R HS VP+I ++ + + G DD + K RE IL R Sbjct: 65 TLCQKLRKHSSVPIIMLTAVTEETDRVTGLELGADDYITKSFSPRELLARIKAILRRSQL 124 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + V L + +L + + K + + I Sbjct: 125 SDSLSVARKVTFAGWQLDTITRQLKHLETHAVKQLSGADLSLLGLFINHAEKILTRDDIA 184 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I+G D E ++ IS+LR L +K + + R GY + Sbjct: 185 REIWGR-DADPFERGIDVQISRLRTHLEDK-DRTLILTVRNKGYML 228 >gi|262045791|ref|ZP_06018755.1| response regulator [Lactobacillus crispatus MV-3A-US] gi|260573750|gb|EEX30306.1| response regulator [Lactobacillus crispatus MV-3A-US] Length = 240 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 45/233 (19%), Positives = 90/233 (38%), Gaps = 15/233 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D V + F +G + + + I L + + Sbjct: 5 ILMVEDDTSVAEMMGMFFKKEGWQQDIAVDGVEAVDMFKKNADKYDLITLDLNLPKKDGI 64 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ + +RA VP+I ++ S + G D+ V KP ++AR+ A++RR+ Sbjct: 65 QVAKEVRAILPTVPIIMLTARGSESDQVLGLGIGADEYVTKPFSPIALIARIKALHRRVM 124 Query: 121 VSNNRAETGPIRVFS------------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 + A T V L +E +L + + Sbjct: 125 MEEEPAHTQEDNQDYEITTDHLKISKNRREVLFDNQPVMGLTPKEFDLLYTMAQKPKQVF 184 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ Q+ ++G ++ EE V++HI KLR+KL K+G + + +GY D Sbjct: 185 SRDQLLELVWG-YEYYGEERTVDAHIKKLRQKLE-KVGAKVIQTVWGVGYKFD 235 >gi|239929738|ref|ZP_04686691.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291438063|ref|ZP_06577453.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291340958|gb|EFE67914.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 232 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 47/230 (20%), Positives = 95/230 (41%), Gaps = 19/230 (8%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 + ++D ++++ DG ++ S R D++ ++ + G + Sbjct: 8 LFVEDDDVIREATQLALERDGFAVTAMPDGLSGLEAFRSDRPDIALLDVMV--PGLDGVS 65 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R IR S VP+I +S + ++G DD V KP ++AR+ A+ RR + Sbjct: 66 LCRRIRDESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRRFGRA 125 Query: 123 NNRAETGPIR------------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 N + + + G + GE L E R+L + G +++ Sbjct: 126 NGGRDESAAAAGAGVLAFGELEIDTGGMEVRRAGEPVALTPTEMRLLLEFSSAPGTVLSR 185 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ ++ + + VV+ H+ +LR K+ G D +++ R GY + Sbjct: 186 DKLLERVW-EYGWGGDTRVVDVHVQRLRTKI----GQDRIETVRGFGYKL 230 >gi|227514219|ref|ZP_03944268.1| response regulator [Lactobacillus fermentum ATCC 14931] gi|227087415|gb|EEI22727.1| response regulator [Lactobacillus fermentum ATCC 14931] Length = 245 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 41/227 (18%), Positives = 90/227 (39%), Gaps = 9/227 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + ++G + ++ D+S + L+ + Sbjct: 19 ILIVDDDKEIVQLLEIYARNEGYEPVTAYNGRDAITKLNTM-PDISLVILDLMMPEMNGM 77 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R +R S +P++ +S + + +G DD V KP + E++ARV ++ RR + Sbjct: 78 DVIRQVRKDSSIPILVLSAKTADMDKIQGLVTGADDYVTKPFNPLEVMARVKSLLRRSEN 137 Query: 122 SNNRAETGPIRVFSDGRDPEVQG------EVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + V + + + L E IL L ++ + + IF Sbjct: 138 QVTNDKPDVLNVGPLVINKDSHEVKTLKGDQIQLTALEFGILYLLASHPNRVFSADDIFE 197 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221 ++ + V V H+S LR K+ G +++ +GY ++ Sbjct: 198 RVW-QQESVVSAKTVMVHVSHLRDKIEAATGGEKVIETVWGVGYKVE 243 >gi|94991797|ref|YP_599896.1| response regulator CsrR [Streptococcus pyogenes MGAS2096] gi|94545305|gb|ABF35352.1| Response regulator CsrR [Streptococcus pyogenes MGAS2096] Length = 228 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 46/224 (20%), Positives = 90/224 (40%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + +G + + D+ ++ L Sbjct: 5 ILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLML--PEMDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R ++ ++ ++ S+ + D G DD + KP E+LAR+ AI+RR + Sbjct: 63 EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122 Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + R + L +RE +L LM N + + + ++ S Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +DEAVE +VV+ +I LR K+ + + R +GY I Sbjct: 183 VW-KYDEAVETHVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225 >gi|299069010|emb|CBJ40258.1| response regulator in two-component regulatory system with CopS, regulation of copper resistance [Ralstonia solanacearum CMR15] Length = 228 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 43/223 (19%), Positives = 98/223 (43%), Gaps = 6/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A + + G ++ + L ++ D+ ++ L Sbjct: 3 LLVVEDEAKTGEYLQQGLTEAGFVVDLARNGVDGLHLATTGDYDLLVLDVML--PDLDGW 60 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118 ++ + +RA + VP++ ++ S+ + + G DD + KP E+LARV Sbjct: 61 QVVQSLRAAACAVPVLFLTARDSVGDRVKGLELGADDYLVKPFAFAELLARVRTLLRRGS 120 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 V+ +R + + + R G+ L +E +LE L RG+ + ++ I S ++ Sbjct: 121 TPVALDRLQIADLVLDLARRRASRSGQRIALTSKEFALLELLARRRGEVLPRSLIASQVW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + + NV++ I +LR K+ + + + R +GY ++ Sbjct: 181 DM-NFDSDTNVIDVAIRRLRAKIDDDFHPKLIQTVRGMGYVLE 222 >gi|299530817|ref|ZP_07044232.1| two component transcriptional regulator, winged [Comamonas testosteroni S44] gi|298721333|gb|EFI62275.1| two component transcriptional regulator, winged [Comamonas testosteroni S44] Length = 223 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 55/221 (24%), Positives = 100/221 (45%), Gaps = 9/221 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D +++ G ++E E ++L D + ++ L L Sbjct: 3 ILLIEDEPTLREQLHQALLQAGHTVETAADGETAQYLGEVESFDAAVLDLGL--PVRDGL 60 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119 + R R +P++ ++ + + D+G DD + KP H E+LAR+ A+ RRL Sbjct: 61 SVLRAWRTQGRSMPVLILTARAAWHEKVAGMDAGADDYLAKPFHMEELLARLRALLRRLS 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++ + G I + S V+G+ L E ++L LM G V++T++ IY Sbjct: 121 PHASALWQCGSITLDSRQARVTVEGQALTLTSHEFKVLALLMQRMGAVVSRTELSEHIY- 179 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D + N +E + +LRKKL +++ R LGY + Sbjct: 180 PQDSDRDSNTIEVFVGRLRKKLPAGS----IETVRGLGYRL 216 >gi|295703773|ref|YP_003596848.1| two-component response regulator [Bacillus megaterium DSM 319] gi|294801432|gb|ADF38498.1| two-component response regulator [Bacillus megaterium DSM 319] Length = 239 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 46/227 (20%), Positives = 94/227 (41%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++ +G + + + D+ ++ L + Sbjct: 5 ILIVEDEEMIARALQIELEHEGYKVFVEHEGKSGLEAALHNSIDLVLLDVML--PELSGI 62 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R IR + P+I ++ + + D G +D + KP E+LARV R Sbjct: 63 EVLRRIRKKNAYLPVILLTARDTTLDKVMGLDHGANDYITKPFEIEEVLARVRNSLRHGA 122 Query: 121 VSNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + E + V + R+ + + L +E +L YL+ N+ +++ I Sbjct: 123 IIQEVTEKKDVHLSIEDLSVNLETREVIRKNKTIILTPKEYDLLVYLLKNQNIVLSRENI 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G +D E NVV+ +I LRKK+ ++ + + R +GY I Sbjct: 183 LLTVWG-YDYEGETNVVDVYIGHLRKKIEEEINSPLIRTVRGVGYVI 228 >gi|258516208|ref|YP_003192430.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] gi|257779913|gb|ACV63807.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] Length = 227 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 39/222 (17%), Positives = 88/222 (39%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + +G +E D+ ++ L + Sbjct: 6 ILIIEDEVKISRFIQLELEHEGYIVEKEKDGRAGLEKALHGNHDLIILDVML--PSLNGM 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118 E+ R +R S++P+I ++ + + D G DD + KP E + R Sbjct: 64 EILRRLRQVSEIPVIMLTAKDDVMDKVMGLDFGADDYLTKPFAIEELLARIRVAFKHKRV 123 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++ + G +++ E L ++E +L+ LM N + + I ++ Sbjct: 124 QHEKSDVIQIGNLKLDLYKYTVSFNNEPIDLTKKEFDLLKLLMVNNEIVLTRDTILEKVW 183 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G ++ A + N+V+ ++ LR K+ ++ + + R +GY + Sbjct: 184 G-YNYAGDTNIVDVYVRYLRIKIDDRYHQKFIHTVRGVGYQL 224 >gi|95928685|ref|ZP_01311432.1| two component transcriptional regulator, winged helix family [Desulfuromonas acetoxidans DSM 684] gi|95135475|gb|EAT17127.1| two component transcriptional regulator, winged helix family [Desulfuromonas acetoxidans DSM 684] Length = 228 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 48/222 (21%), Positives = 94/222 (42%), Gaps = 8/222 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD + + +G+ + ++ Q+ D+ ++ L G Sbjct: 4 ILIIDDDNELCELLTDYLTTEGLQVSCVHNGSDG-ARQAVEHYDLVILDVML--PGMNGF 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R +R S+VP++ ++ + + G DD + KP + RE++AR+ AI RR Sbjct: 61 DVLRQVRQSSEVPVVMLTARGEDIDRIVGLELGADDYLPKPFNPRELVARIRAIQRRTDN 120 Query: 122 SNNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 N + GR L E +L L+++ G+ V++ + S + Sbjct: 121 RNQMDAPLRVGDLSLDPGGRQVRCHDTEIVLTSVEFSLLHMLLSHAGQVVSREDMVSQVL 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYS 219 G + ++ HIS +RKKL G + + + R +GY Sbjct: 181 GRHLSPYD-RSIDVHISSVRKKLGQTPSGRERIKTIRGVGYQ 221 >gi|295815579|gb|ADG36299.1| SilR [Morganella sp. RP-42] Length = 226 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 39/223 (17%), Positives = 99/223 (44%), Gaps = 6/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G ++ ++ L +A D+ ++ L Sbjct: 3 ILIVEDEIKTGEYLSKGLTEAGFVVDHADNGLTGYHLAMTAEYDLVILDIML--PDVNGW 60 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118 ++ R++R A +P++ ++ +++ + + G DD + KP E+LARV Sbjct: 61 DIIRMLRSAGKGMPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGN 120 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++ ++ + + V R G L +E +LE+ + ++G+ + ++ I S ++ Sbjct: 121 TMITESQLKVADLSVDLVSRKVSRAGNRIVLTSKEFSLLEFFIRHQGEVLPRSLIASQVW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + N ++ + +LR K+ N G + + R +GY ++ Sbjct: 181 DMS-FDSDTNAIDVAVKRLRAKIDNDYGTKLIQTVRGVGYMLE 222 >gi|331003431|ref|ZP_08326930.1| hypothetical protein HMPREF0491_01792 [Lachnospiraceae oral taxon 107 str. F0167] gi|330412477|gb|EGG91866.1| hypothetical protein HMPREF0491_01792 [Lachnospiraceae oral taxon 107 str. F0167] Length = 231 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 51/230 (22%), Positives = 91/230 (39%), Gaps = 11/230 (4%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + ++ DD + D +G + E L + R D+ I+ Sbjct: 3 LILVCDDDREIVDAIKIYLSGEGFEVLTAYDGEEAIKLMAKNRVDLLIIDIM--MPVLDG 60 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + IR +S VP+I +S + + G DD + KP + E++ARV + RR K Sbjct: 61 IRATMKIRENSTVPIIMLSAKSEDADKILGLNIGADDYLTKPFNPLELVARVKSQLRRYK 120 Query: 121 VSNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 N + + + + ++ + GE+ L E IL L N GK + +I Sbjct: 121 KLGNISIPESQKVVVGDLEIDDETKEVTIAGEMIKLTPIEYNILLLLAKNAGKVFSIDEI 180 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 + I+ + +N V HI +R+K+ N + +GY I+ Sbjct: 181 YEQIWNE-EAIGADNTVAVHIRHIREKIEINPKEPRYLKVVWGVGYKIEK 229 >gi|260866719|ref|YP_003233121.1| DNA-binding response regulator CusR in two-component regulatory system with CusS [Escherichia coli O111:H- str. 11128] gi|257763075|dbj|BAI34570.1| DNA-binding response regulator CusR in two-component regulatory system with CusS [Escherichia coli O111:H- str. 11128] gi|323179962|gb|EFZ65519.1| transcriptional activator protein irlR [Escherichia coli 1180] Length = 227 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 37/224 (16%), Positives = 97/224 (43%), Gaps = 6/224 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G ++ ++ L + D+ ++ L Sbjct: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIML--PDVNGW 60 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118 ++ R++R A+ +P++ ++ +++ + + G DD KP E+LARV Sbjct: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYQVKPFAFAELLARVRTLLRRGA 120 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + ++ + + V R G L +E +LE+ + ++G+ + ++ I S ++ Sbjct: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + + + N ++ + +LR K+ N + + R +GY ++ Sbjct: 181 DM-NFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223 >gi|227499853|ref|ZP_03929946.1| DNA-binding response regulator [Anaerococcus tetradius ATCC 35098] gi|227217962|gb|EEI83235.1| DNA-binding response regulator [Anaerococcus tetradius ATCC 35098] Length = 237 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 42/225 (18%), Positives = 83/225 (36%), Gaps = 10/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + D D + + + D+ ++ L Sbjct: 6 ILIVEDEKTISDIVKNYLIKDNYVVFQAYDGKEALEIFDKEEIDLVILDLML--PKLSGE 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IR S+VP+I S ++ G DD V KP ++E++ RV A+ RR++ Sbjct: 64 EVLKNIRNKSKVPVIITSAKVEEFDRINGLRLGADDYVTKPFSNKELVERVKAVLRRIEK 123 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEV------FPLPRRERRILEYLMANRGKRVAKTQIFS 175 N L + E I+ L +N K + +I Sbjct: 124 YNIPRADIIKTNDGRLLMDLKYNIFLKDGEEVSLTKNEFSIIRTLFSNPNKIFTRDEIIE 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYS 219 +GL D + +++HI +R+K+ + + + +GY Sbjct: 184 LTFGL-DYDAYDRAIDTHIKNIRQKIEDNPKKPQYIKTIYGMGYK 227 >gi|227498000|ref|ZP_03928176.1| response regulator [Actinomyces urogenitalis DSM 15434] gi|226832590|gb|EEH64973.1| response regulator [Actinomyces urogenitalis DSM 15434] Length = 227 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 40/221 (18%), Positives = 79/221 (35%), Gaps = 6/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + + + ++ L G + Sbjct: 5 ILVVDDDTALAEMIGIMLESEHYEPFFCADGAQALATFREVNPHLVLLDLML--PGLDGV 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119 E+ R+IRA S VP+I ++ Q + ++G DD V KP +E+ R Sbjct: 63 EICRLIRAESDVPVIMLTARTDTQDVVAGLEAGADDYVTKPFKSKELLARVRTRLRRGTE 122 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + G + + G G L E +L L K + ++ + ++G Sbjct: 123 AGAVEHVRVGDVDIDVLGHRVTRDGAALALTPLEFDLLLTLARTPSKAFTREELLARVWG 182 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYS 219 A + +V H+ +LR K+ + + R +GY Sbjct: 183 -HQHAADTRLVNVHVQRLRSKVEKDPEHPTIVVTVRGVGYR 222 >gi|255657155|ref|ZP_05402564.1| two-component response regulator [Clostridium difficile QCD-23m63] gi|296452007|ref|ZP_06893722.1| response regulator [Clostridium difficile NAP08] gi|296879598|ref|ZP_06903577.1| response regulator [Clostridium difficile NAP07] gi|296259198|gb|EFH06078.1| response regulator [Clostridium difficile NAP08] gi|296429401|gb|EFH15269.1| response regulator [Clostridium difficile NAP07] Length = 223 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 41/223 (18%), Positives = 92/223 (41%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++ + G + + + S D+ ++ Sbjct: 4 ILVVEDEKRMQSIIVEYMQKGGYTCVTADDGVEALTILKSNNIDLMILDVM--MPYLDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R+ R + +P+I ++ + L ++ G DD + KP + +LA+V A+ RR Sbjct: 62 SVCRVSREMTNIPIIILTAKGEEEDKLKGYEYGADDYITKPFSPKVLLAKVNALLRRYTT 121 Query: 122 SNNRAETGPIRVFSD--GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + ++F R V+ ++ L +E +L M N + ++ ++ + I+G Sbjct: 122 GIPKNSLILGKIFIMVASRQVYVEDKLIDLTYKEFELLRLFMENPNQVFSREKLLNCIWG 181 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D V++HI LRKKL ++ + + GY + Sbjct: 182 -YDFEGNTRTVDTHIKTLRKKLGSEGHH--IVTLIRSGYKFEV 221 >gi|182413545|ref|YP_001818611.1| two component transcriptional regulator [Opitutus terrae PB90-1] gi|177840759|gb|ACB75011.1| two component transcriptional regulator, winged helix family [Opitutus terrae PB90-1] Length = 228 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 49/221 (22%), Positives = 95/221 (42%), Gaps = 8/221 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D A + + +G +++ + L +S D + ++ L L Sbjct: 9 LVVEDDAKISSFVVKGLKQEGYAVDHAPDGDTGLALATSTAYDAAVVDIML--PELDGLS 66 Query: 63 LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA--AIYRRL 119 L R +R S +P++ +S S++ + +G DD + KP E+ AR+ Sbjct: 67 LVRRLRAERSAMPVLFLSARASVEDRVKGLQAGGDDYLTKPFAFAELSARLQALIRRASR 126 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 R G + + R V G+ L RE +LEYL+ + G+ V K I ++ Sbjct: 127 SPEATRLSAGDVTLDLVSRTVTVGGQPVELQPREFSLLEYLLRHAGRPVTKVMILEHVWD 186 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + NVV+ +S+LR K+ +++ R +GY Sbjct: 187 -YSFDPQTNVVDVLMSRLRSKI--DPDKTRIETLRGVGYVF 224 >gi|15672984|ref|NP_267158.1| two-component system regulator [Lactococcus lactis subsp. lactis Il1403] gi|12723949|gb|AAK05100.1|AE006334_6 two-component system regulator [Lactococcus lactis subsp. lactis Il1403] gi|326406546|gb|ADZ63617.1| two-component system regulator [Lactococcus lactis subsp. lactis CV56] Length = 228 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 44/221 (19%), Positives = 97/221 (43%), Gaps = 3/221 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + D + + + +A+ + + + L Sbjct: 6 LIVEDEPSLSDYVKKELIFEDYQVSTAFDGLSALEIFETAKPAIDVVLLDWMIPKLDGLT 65 Query: 63 LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R ++ P+I ++ + + D+G DD + KP E+LAR+ I+R+ Sbjct: 66 VLRRMKKIQPDTPIIFLTACDYIGDKVAGLDAGADDYITKPFEIEELLARLRLIFRKWSN 125 Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 S+++ +V EV G+ L +RE +L Y + +RG V++ I ++G+ Sbjct: 126 SSSKVYELDYLKVDLSAHTTEVAGKTVNLTQREFSLLSYFLEHRGIVVSRADILDDVWGM 185 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D +EN V++++ LR K+ +++ R +GY ++ Sbjct: 186 -DFDGQENTVDAYVRYLRAKIDLPNHKSLIETVRGIGYRLN 225 >gi|332968660|gb|EGK07713.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Psychrobacter sp. 1501(2011)] Length = 240 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 35/231 (15%), Positives = 88/231 (38%), Gaps = 12/231 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + + + + + + + + + I L+ + Sbjct: 5 ILIIEDDPDLAELISDYLTMNYYEVHHAPTGQEGLDILDAKERAIDLIILDLMLPDMDGM 64 Query: 62 ELPRIIR-----AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LA 110 ++ + IR ++VP++ ++ + + G DD + KP RE+ + Sbjct: 65 QVCQKIRGGKNTQTNKVPIVMLTAKGDTTDRVLGLEMGADDYIAKPFEPRELLARIRAVL 124 Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 R + ++ G + VF D + + + L + ++L Y + GK + + Sbjct: 125 RRHEQPNQADSQSDSLTFGRLSVFPDSHEVTIDDKPVRLTTHQFQLLHYFATHAGKVLNR 184 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 Q++ A+ + ++ HIS+LR + + + + R +GY Sbjct: 185 EQLWQAMPNDDSSDNIDRAIDVHISRLRALIEDNPRQPKRIITVRGVGYQF 235 >gi|332530643|ref|ZP_08406576.1| two component transcriptional regulator [Hylemonella gracilis ATCC 19624] gi|332039926|gb|EGI76319.1| two component transcriptional regulator [Hylemonella gracilis ATCC 19624] Length = 227 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 39/223 (17%), Positives = 83/223 (37%), Gaps = 10/223 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + + +G E + + D+ ++ L G L Sbjct: 2 LIVEDEPAIAELIAVNLRHNGFQPTLALDGESAQREIDAMLPDLVLLDWML--PGASGLT 59 Query: 63 LPRII---RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV--NKPIHHREILARVAAIYR 117 L R VP+I ++ + D+G DD + R R Sbjct: 60 LARRWRGDPRTKAVPIIMLTARGDEADRVAGLDAGADDYMAKPFSTKEMLARIRAVLRRR 119 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + E G +++ + ++ L E ++L YLM++ + ++ Q+ + Sbjct: 120 APEQAAVTLEAGRLKLDTATHRVSYDEQLLKLGPTEFKLLHYLMSHAERVHSRGQLLDKV 179 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G +EE V+ HI +LR+ L +++ R GY + Sbjct: 180 WGDH-VFIEERTVDVHIKRLREALGA--AAPMIETVRGAGYRL 219 >gi|238925846|ref|YP_002939364.1| DNA-binding response regulator [Eubacterium rectale ATCC 33656] gi|238877523|gb|ACR77230.1| DNA-binding response regulator [Eubacterium rectale ATCC 33656] Length = 248 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 47/229 (20%), Positives = 87/229 (37%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD + D ++ + F S D++ ++ L Sbjct: 22 ILIIDDEQDIADLLEVYLKNENYVVYKFYCATDAMSCIESGDIDLAILDIML--PDMNGF 79 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L ++IR P+I ++ + G DD V KP E++ARV A RR K Sbjct: 80 SLCQLIRKKYTYPIIMLTAKIEETDKITGLTLGADDYVTKPFRPLEVVARVKAQLRRYKK 139 Query: 122 SNNRAE---------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + + + + GE+ L E IL L+++ G V+ + Sbjct: 140 YSPGIITEKIPSELSYNKLCLNVQTHECLLDGELVSLTPTEFSILHVLLSSAGNVVSIEE 199 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 +F A++ + + + HI LR+KL + + + +GY I Sbjct: 200 LFHAVWKDEYYSKNSSTITVHIRHLREKLNDTSDTPQYIKTIWGVGYKI 248 >gi|218246759|ref|YP_002372130.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 8801] gi|257059801|ref|YP_003137689.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8802] gi|218167237|gb|ACK65974.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8801] gi|256589967|gb|ACV00854.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8802] Length = 246 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 91/228 (39%), Gaps = 9/228 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++IDD A + + G + + L + D+ ++ L G V Sbjct: 4 ILVIDDDAAISELVSVNLEMAGYDVNQAGDGIKGQALAVQLQPDLIMLDLMLPKVDGFTV 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R + +P++ ++ + ++ F++G DD + KP E+LARV A+ RR Sbjct: 64 CQRLRRDERTADIPVLMLTALGETKDKVEGFNAGADDYLTKPFEVEEMLARVRALLRRTD 123 Query: 121 VSNNRAETGPIRVF------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 A+ I + + + + L E +L L+ G+ V+ ++I Sbjct: 124 RIPQAAKHSEILNYGPLTLIPERFEAIWFQKTVKLTHLEFELLHCLLQRHGQTVSPSEIL 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 ++G +D + + HI LR KL + + + GY ++ Sbjct: 184 KEVWG-YDPDDDIETIRVHIRHLRTKLEPDPRHPCYIKTVYGAGYCLE 230 >gi|171911888|ref|ZP_02927358.1| two component transcriptional regulator, winged helix family protein [Verrucomicrobium spinosum DSM 4136] Length = 227 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 48/220 (21%), Positives = 101/220 (45%), Gaps = 8/220 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D ++ +A ++ +++ DV ++ L G E Sbjct: 15 LVVEDDPDLRRSLVATLREENYAVDAAGDGAEGFQRALENEYDVIVLDVML--PGLSGWE 72 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLKV 121 + +R P++ ++ ++Q + + G DD + KP E+LAR+ A I R Sbjct: 73 FLQKLRPTKTSPVLMLTARDAVQDRVKGLNQGADDYLTKPFDIEELLARIRALIRRAAGQ 132 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + + R +GE P+ RE ++EYL ++G+ V++T ++ ++ Sbjct: 133 PQPVLTIRDLSIDTAARKVLWKGEEVPVTAREYTLIEYLALHQGEVVSRTTLYEHLFDED 192 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D + N+++ H+S LRKKL + + ++R GYSI+ Sbjct: 193 DSTL-SNLLDVHVSNLRKKL----APELITTRRGHGYSIE 227 >gi|167760992|ref|ZP_02433119.1| hypothetical protein CLOSCI_03390 [Clostridium scindens ATCC 35704] gi|167661371|gb|EDS05501.1| hypothetical protein CLOSCI_03390 [Clostridium scindens ATCC 35704] Length = 235 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 47/233 (20%), Positives = 99/233 (42%), Gaps = 15/233 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A + A G+ + + L R D+ ++ L + Sbjct: 6 ILIVEDDADISMIEEAYLNTAGLETKIVSEGSQVVPLLEKERFDLILLDLML--PDKSGY 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IR +P++ ++ L F +G DD ++KP E++ARV A R+ + Sbjct: 64 EICKEIRDKLDIPILMVTARTESVDKLRGFGAGADDYISKPFDPAELVARVNANLRQYER 123 Query: 122 -----------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + + G +R+ ++G + P RE +L++L N +K Sbjct: 124 SRFGAAKKSEKNPDEIVIGDLRILTEGWKVYKGEKEIRFPNREFELLQFLAMNPNIVFSK 183 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 Q+F I+G +D + V HI+++R+K+ + +++ GY ++ Sbjct: 184 EQLFEKIWG-YDYVGDSATVMVHINRIREKIEDDSRKPKILETVWGAGYRLNK 235 >gi|163741992|ref|ZP_02149381.1| two-component response regulator [Phaeobacter gallaeciensis 2.10] gi|161384713|gb|EDQ09093.1| two-component response regulator [Phaeobacter gallaeciensis 2.10] Length = 230 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 47/223 (21%), Positives = 92/223 (41%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D G + D+ ++ L L Sbjct: 5 ILIVDDDPDILDVTGFAVEKAGYETLFASDGLNALKASRQQLPDLIVLDIGL--PEMDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR S VP++ ++ + + G DD + KP RE++AR+ AI +R Sbjct: 63 EVCREIRKSSDVPILFLTARDDEIDRIVGLEIGADDYLTKPFSPRELVARIKAILKRSTP 122 Query: 122 SNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + E G +++ ++ + G L E R+L L+A +++TQ+ + Sbjct: 123 TPAPPEAVLEQGSLQLNAERHLCQFGGTPVSLTGSEFRLLATLLARPDHVISRTQLVDTL 182 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 YG ++ V + ++SHI +R KL + + + +G + Sbjct: 183 YG-YNIHVSDRTIDSHIRNIRAKLAQAGCAEGIVTVHGVGLRM 224 >gi|225570310|ref|ZP_03779335.1| hypothetical protein CLOHYLEM_06406 [Clostridium hylemonae DSM 15053] gi|225160842|gb|EEG73461.1| hypothetical protein CLOHYLEM_06406 [Clostridium hylemonae DSM 15053] Length = 228 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 44/225 (19%), Positives = 89/225 (39%), Gaps = 6/225 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + G +G +E + + ++ ++ L L Sbjct: 3 ILIIEDDGGLSRGITFTMEREGYKVECCSGYKQGLAKVQKTPPELILLDWNL--PDGDGL 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI---HHREILARVAAIYRR 118 +L + IR S VP++ I+ + + G DD + KP + ++ ++ Y Sbjct: 61 DLCKKIREFSHVPILMITARDMEMDEVMCLECGADDYIAKPFSLAVLKARVSALSRRYVL 120 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 S +G I + L E R+L+Y + N+ + + K QI ++ Sbjct: 121 KTGSKRLLVSGDISIDGAEMKAYKGDRALDLSLTEFRLLKYFLENKNQVLLKEQILEYVW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 + VEEN + +I +LR+KL N + + + +GY + Sbjct: 181 DMGGTFVEENTLTVNIGRLRRKLETNSSSTEYIKTIHGMGYLWEE 225 >gi|225018950|ref|ZP_03708142.1| hypothetical protein CLOSTMETH_02901 [Clostridium methylpentosum DSM 5476] gi|224948294|gb|EEG29503.1| hypothetical protein CLOSTMETH_02901 [Clostridium methylpentosum DSM 5476] Length = 222 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 43/219 (19%), Positives = 91/219 (41%), Gaps = 6/219 (2%) Query: 6 DDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPR 65 +D + G +G + ++ D+ ++ L ++ R Sbjct: 2 EDDKTIVMGLAYSLEQEGFEVYTAGNVSAALTALKQN-YDLILLDLTL--PDGTGYDVCR 58 Query: 66 IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNR 125 ++ P+I ++ + D G DD + KP RE+++R+ ++ RR ++ Sbjct: 59 AVKGRGDTPVIFLTACDDEGNVVMGLDMGADDYITKPFRIRELISRIKSVLRRCSKEVSK 118 Query: 126 AET--GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDE 183 G IRV + + PL E R+L L+ N G+ +++ Q+ I+ + + Sbjct: 119 TVFLSGSIRVNTAQARVTRGEQEIPLTSVEYRLLLTLIHNAGQVLSRAQLLDGIWDVGGD 178 Query: 184 AVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221 V +N + +I +LR KL + + + R +GY ++ Sbjct: 179 FVNDNTLTVYIKRLRDKLEDDPAHPSIIRTVRGIGYLVE 217 >gi|182438910|ref|YP_001826629.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326779565|ref|ZP_08238830.1| two component transcriptional regulator, winged helix family [Streptomyces cf. griseus XylebKG-1] gi|178467426|dbj|BAG21946.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326659898|gb|EGE44744.1| two component transcriptional regulator, winged helix family [Streptomyces cf. griseus XylebKG-1] Length = 219 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 41/222 (18%), Positives = 88/222 (39%), Gaps = 10/222 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ +D + +G + + + D+ ++ L G Sbjct: 4 ILIAEDEERIASFVQKGLRANGFTTVVAEDGDLALGHALTGGFDLMVLDIGL--PGRDGF 61 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118 + R +R P+I ++ S++ T+ + G DD + KP E+ R+ Sbjct: 62 TVLRELREARVTLPVIVLTARDSVRDTVAGLEGGADDWMTKPFRFEELLARVRLRQRTAA 121 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 +G + + R L RE +LE + + G+ +++ QI S ++ Sbjct: 122 RAPEVTMLRSGSLALDLRTRRARADDRTVDLTAREFVLLEMFLRHPGQVLSREQILSHVW 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G +D N+V+ ++ LR+KL G + +++ R +GY + Sbjct: 182 G-YDFDPGSNIVDVYVRALRRKL----GAERLETIRGMGYRL 218 >gi|291558626|emb|CBL37426.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [butyrate-producing bacterium SSC/2] Length = 231 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 46/229 (20%), Positives = 86/229 (37%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD + D ++ + F S D++ ++ L Sbjct: 5 ILIIDDEQDIADLLEVYLKNENYVVYKFYCATDAMSCIESGDIDLAILDIML--PDMNGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L ++IR P+I ++ + G DD V KP E++ARV A RR K Sbjct: 63 SLCQLIRKKYTYPIIMLTAKIEETDKITGLTLGADDYVTKPFRPLEVVARVKAQLRRYKK 122 Query: 122 SNNRAE---------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + + + + GE L E IL ++++ G V+ + Sbjct: 123 YSPGIITEKIPSELSYNKLCLNVQTHECLLDGEPVSLTPTEFSILHVILSSAGNVVSIEE 182 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 +F A++ + + + HI LR+KL + + + +GY I Sbjct: 183 LFHAVWKDEYYSKNSSTITVHIRHLREKLNDTSDTPQYIKTIWGVGYKI 231 >gi|291302298|ref|YP_003513576.1| winged helix family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290571518|gb|ADD44483.1| two component transcriptional regulator, winged helix family [Stackebrandtia nassauensis DSM 44728] Length = 225 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 50/221 (22%), Positives = 87/221 (39%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D + + DG ++E E D ++ L G +V Sbjct: 3 LLIVEDEQRMANALARGLKADGFAVEVAADGEAGLEAARFGSYDAIILDIMLPKLSGYEV 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R ++ VP++ +S D D G DD + KP + +LAR+ A+ RR Sbjct: 63 IRTLRR--ENNWVPVLVLSAKDGEYDQSDGLDLGADDYLTKPFSYVVLLARLRALLRRGT 120 Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + T + + L RE +LEYLM N + V K + ++ Sbjct: 121 PARPSVLTVGDLTLDPARHTVHREDTEISLSTREFSLLEYLMRNAEQVVTKVTLLDHVWS 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + N+VE +I LRKK+ G + + R GY + Sbjct: 181 ASE-DTHVNLVEVYIGYLRKKIDTPFGRSSLQTVRGAGYRL 220 >gi|225352770|ref|ZP_03743793.1| hypothetical protein BIFPSEUDO_04400 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225156377|gb|EEG69946.1| hypothetical protein BIFPSEUDO_04400 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 244 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 42/231 (18%), Positives = 94/231 (40%), Gaps = 14/231 (6%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + +++DD + + + +G + + + D+ ++ L G Sbjct: 12 LIMIVDDDQALGEMLSIVLESEGFKTVTCLDGWRAVEMFPTLQPDLMLLDVML--PGLDG 69 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +++ + IR +S P+I ++ + ++G DD V+KP E++AR+ A R K Sbjct: 70 VQVAQRIRQNSNTPIIMLTAKSDTTDVVKGLEAGADDYVSKPFEVVELMARIRARLRMPK 129 Query: 121 VSNN----------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 V+ R + G + + G L E +L L A+ G+ +++ Sbjct: 130 VNAPAGKDEGDLTERLQCGTLVMDRAEHTATKDGVDLQLTPTEFELLYVLAAHAGEALSR 189 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYSI 220 + ++G ++ + +V H+ +LR K+ + + R +GY Sbjct: 190 ANLLKRVWG-YESGGDTRLVNVHVQRLRMKVETDPENPRIVQTVRGIGYKF 239 >gi|126700822|ref|YP_001089719.1| two-component response regulator [Clostridium difficile 630] gi|115252259|emb|CAJ70100.1| Two-component response regulator [Clostridium difficile] Length = 223 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 41/223 (18%), Positives = 93/223 (41%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D +++ + G + + + S D+ ++ Sbjct: 4 ILVVEDEKRMQNIIVEYMQKGGYTCITADDGVEALTILKSNNIDLMILDIM--MPYLDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R+ R + +P+I ++ + L ++ G DD + KP + +LA+V A+ RR Sbjct: 62 SVCRVSREMTNIPIIILTAKGEEEDKLKGYEYGADDYITKPFSPKVLLAKVNALLRRYTT 121 Query: 122 SNNRAETGPIRVFSD--GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + ++F R V+ ++ L +E +L M N + ++ ++ + I+G Sbjct: 122 DIPKNSLSLGKIFIMVASRQVYVEDKLIDLTYKEFELLRLFMENPNQVFSREKLLNCIWG 181 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D V++HI LRKKL ++ + + GY + Sbjct: 182 -YDFEGNTRTVDTHIKTLRKKLGSEGHH--IVTLIRSGYKFEV 221 >gi|56962941|ref|YP_174668.1| two-component response regulator [Bacillus clausii KSM-K16] gi|56909180|dbj|BAD63707.1| two-component response regulator [Bacillus clausii KSM-K16] Length = 231 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 49/227 (21%), Positives = 88/227 (38%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + D A ++G + E L ++ D+ L+ + Sbjct: 4 ILLVEDDPEISDLVKAHLENEGYRVLTAADGEEAARLFANGGVDLVL--LDLMLPKMNGM 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARVAA 114 L + IR HS VP++ +S S G DD + KP + + R Sbjct: 62 TLLKQIRVHSSVPILILSAKGSDLDKALGLGFGADDYIAKPFSLIELTARVQAAIRRATD 121 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + G IR+ D G+ L +E ++L M N + K Q++ Sbjct: 122 YTVAEAKEERVLQRGGIRLDVDAFMAYKNGQAVKLTAKEFQLLHVFMENPKRVFTKEQLY 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 I+ EENV+ HI +LR+K+ N + +++ +GY + Sbjct: 182 QQIWNEP-YLGEENVINVHIRRLREKIETNPSKPEIIETVWGIGYKL 227 >gi|189346808|ref|YP_001943337.1| two component transcriptional regulator, winged helix family [Chlorobium limicola DSM 245] gi|189340955|gb|ACD90358.1| two component transcriptional regulator, winged helix family [Chlorobium limicola DSM 245] Length = 222 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 44/220 (20%), Positives = 98/220 (44%), Gaps = 4/220 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + ++ +++ + + D+ ++ + G + Sbjct: 3 ILVIEDEPGISGFLKEGLEEEYFAVDLAFDGKTGLDMALLNEYDLMIVDWMI--PGISGI 60 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +R A S VP++ ++ +L+ + D+G +D + KP E+LAR+ RR Sbjct: 61 EVCRQVRKAGSSVPILFLTAKDTLEDIVFGLDAGANDYIRKPFAFEELLARIRVQLRRNN 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 ++ G + V + L +E +LE+L N+ K +++I ++ + Sbjct: 121 PESDTITAGCVTVNPVTHQVFCRNTEIALTPKEFSLLEFLARNKDKVCTRSRIIEHVWDM 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + +V++ +I+ LRKKL + + + R +GY I Sbjct: 181 H-FDSDTSVIDVYINFLRKKLDIVGCGNIIQTIRGVGYII 219 >gi|332655319|ref|ZP_08421059.1| DNA-binding response regulator [Ruminococcaceae bacterium D16] gi|332515824|gb|EGJ45434.1| DNA-binding response regulator [Ruminococcaceae bacterium D16] Length = 245 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 46/228 (20%), Positives = 80/228 (35%), Gaps = 10/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD + +G + + ++ + Sbjct: 18 ILICDDDKDIVSALDIYLSSEGYKTVKAYNGNEALRAVEQNDIHLILMDIM--MPELDGI 75 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 +R S VP+I ++ + + G DD + KP + E++ARV + RR Sbjct: 76 RATAKLREGSNVPIILLTAKSEDNDKILGLNIGADDYITKPFNPLEVIARVKSQLRRYTA 135 Query: 122 SNNRAETG------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + PI + + V GE L E IL+ LM + G+ + QI+ Sbjct: 136 LGGAEKAPGLLSVGPISMDDGAKLVTVDGEPVSLTPIEYNILKLLMTHPGQVFSSAQIYE 195 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 ++ EN V HI LR+K+ N + LGY +D Sbjct: 196 QVWNDPAY-GSENTVAVHIRHLREKIEINPAEPRYLKVVWGLGYKMDK 242 >gi|289628083|ref|ZP_06461037.1| response regulator receiver:transcriptional regulatory protein, C-terminal [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289646706|ref|ZP_06478049.1| response regulator receiver:transcriptional regulatory protein, C-terminal [Pseudomonas syringae pv. aesculi str. 2250] gi|330867466|gb|EGH02175.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 267 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 48/225 (21%), Positives = 92/225 (40%), Gaps = 9/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD +++ ++ G + DV ++ L GE L Sbjct: 41 LIVDDDVAIRELLCDYLTRFNINARGVTDGTQMRQALTEETFDVVVLDLML--PGEDGLS 98 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R +R+ S +P++ ++ + + G DD + KP RE++AR+ I RR++ Sbjct: 99 LCRWLRSTSDIPILMLTARCEPTDRIIGLELGADDYMAKPFEPRELVARIQTILRRVRDE 158 Query: 123 NNRAETGPIRVFSD-----GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + T + G V PL E R+L + + +++ Q+ A Sbjct: 159 RSDQRTTVRFDAWRLNSVLRQLTAADGLVVPLSNAEFRLLRVFLERPHRVLSREQLLDAA 218 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 G EA + ++ +S+LR+KL + + + R GY D Sbjct: 219 RGRSIEAFD-RSIDLLVSRLRQKLGDDPKNPQLIKTVRGEGYLFD 262 >gi|257791925|ref|YP_003182531.1| two component transcriptional regulator, winged helix family [Eggerthella lenta DSM 2243] gi|257475822|gb|ACV56142.1| two component transcriptional regulator, winged helix family [Eggerthella lenta DSM 2243] Length = 234 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 41/231 (17%), Positives = 78/231 (33%), Gaps = 15/231 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + + + +E + + L V ++ + Sbjct: 6 LIVEDDSDIIEILSLYLCGSDYQVETAANGKLGLELLERKSPSVILVDLM--MPEMNGFD 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120 + R+ S P+I IS + D G D + KP E+LA + A+ RR Sbjct: 64 FIKEARSVSNAPIIIISARSQPTDKMLGLDLGADGYITKPFDPIEVLAYIRAVLRRCNAL 123 Query: 121 ---------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + G I + V E +I L ++ G+ K Sbjct: 124 SASGPSNISPDGSVVRMGAIEFDKESLIVRKNSNVVSFTASELKIFSKLFSSPGRVYTKA 183 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 Q++ I E+ + HIS +R K+ + + + R LGY + Sbjct: 184 QLYELISASSHGGGED-SIMVHISNIRSKIEDDPNNPAHIVTVRGLGYRFE 233 >gi|153815974|ref|ZP_01968642.1| hypothetical protein RUMTOR_02219 [Ruminococcus torques ATCC 27756] gi|145846621|gb|EDK23539.1| hypothetical protein RUMTOR_02219 [Ruminococcus torques ATCC 27756] Length = 224 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 42/221 (19%), Positives = 94/221 (42%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L +D + A D+ S++ + E ++ + D ++ + L Sbjct: 3 ILLAEDEKDLNKIITARLKDEYYSVDSCFDGKEAEEYLTAVKYDAVILDIM--MPKKDGL 60 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119 + + +R P+I ++ S++ + D+G +D + KP E+LARV + + Sbjct: 61 SVLKEMRRKKDSTPVILLTAKDSVEDRVAGLDAGANDYLVKPFAFEELLARVRVLLRKPE 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++ + V D E L +E +L Y++ N G +++ ++ ++ Sbjct: 121 EMPKTCYTIADLEVHLDTHKVIRGKEEIRLSGKEFALLRYMVQNAGIVLSRDRLEQHLW- 179 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D NV++ +I LRKK+ + + + R +GY + Sbjct: 180 NYDYMGSSNVIDVYIRYLRKKIDDGREKKLIHTVRGVGYVL 220 >gi|331085187|ref|ZP_08334273.1| hypothetical protein HMPREF0987_00576 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330407970|gb|EGG87460.1| hypothetical protein HMPREF0987_00576 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 233 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 45/230 (19%), Positives = 81/230 (35%), Gaps = 11/230 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D + + + + + + ++ + + Sbjct: 6 ILLIEDDKEISEMLKNYLTVENYEVICAYDGQEACDYFDRTDFSMILLDLMI--PKINGM 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARVAA 114 ++ + IR HS VPLI IS S G DD + KP + + R Sbjct: 64 DVMQHIREHSVVPLIIISAKDSEIDKTLGLSLGADDYITKPFSVVEVLARIKANIRRRNQ 123 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + R G + + G L +E IL+ LM + K K QI+ Sbjct: 124 YDQGSEDVPKRLTAGELVMNLSDYTLTKSGRRVELTAKEYEILKLLMQHPKKVYTKEQIY 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223 + ++ +EN V HIS+LR K+ + + +GY + N Sbjct: 184 ALVW-KDAYLGDENAVNVHISRLRNKIEEDTRNPRYIITVWGIGYKLGEN 232 >gi|325845377|ref|ZP_08168676.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Turicibacter sp. HGF1] gi|325488592|gb|EGC91002.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Turicibacter sp. HGF1] Length = 230 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 44/226 (19%), Positives = 103/226 (45%), Gaps = 11/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++ G ++ + E DV ++ L + Sbjct: 5 ILVVEDEFSIQRILQYDLTQSGFLVDLASDGEEGLKKALVNDYDVILLDIML--PKKDGF 62 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119 + + +RA + ++ +S + D G DD + KP RE+++++ AI RR Sbjct: 63 AVCKELRAQNISTYIVMLSARDDELDRVSGLDFGADDYMTKPFSSREVVSKIKAIIRRKE 122 Query: 120 ----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + N G I++ + + V G+V +E +LE+L+ ++G+ +++ + Sbjct: 123 VLSSEKNKNYLGYGSIKLDNSRFEVLVNGQVIDFTLKEYELLEFLIQHKGQAMSRDVLLD 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G F+ + +V+ HI K+R+KL++ + + R +GY ++ Sbjct: 183 RLWG-FEYDGDTRIVDVHIFKIREKLKDYGIK--IKTIRGIGYMLE 225 >gi|87310230|ref|ZP_01092361.1| DNA-binding response regulator [Blastopirellula marina DSM 3645] gi|87286979|gb|EAQ78882.1| DNA-binding response regulator [Blastopirellula marina DSM 3645] Length = 234 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 51/221 (23%), Positives = 89/221 (40%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D L+ + G S E + + D ++ L G L Sbjct: 14 ILVVEDEQLLGKSLSRGLTEAGHECTWTRSGEKGLEYARTQQFDAILLDLML--PGIGGL 71 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-AIYRRL 119 E+ R +R PL+ ++ S+ + D G DD + KP E+LAR+ R Sbjct: 72 EVVRTLRDEGIGTPLLILTALGSVDDRVQGLDHGADDYMVKPFAFPELLARLNAMWRRAS 131 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 E GP+ + R + L E ILE LM + G+ V++ + ++G Sbjct: 132 PRPALNYEAGPLALDLGSRKVTRSSKEIDLSPSEFSILELLMRHAGQIVSRKMLNEHLWG 191 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D NV++ HI+ LR+K+ + + R GY + Sbjct: 192 Q-DWNGMTNVIDVHINHLRQKVDRGFDEPLIHTVRGRGYVL 231 >gi|325113029|ref|YP_004276975.1| two-component response regulator [Acidiphilium multivorum AIU301] gi|325052496|dbj|BAJ82833.1| two-component response regulator [Acidiphilium multivorum AIU301] Length = 225 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 43/221 (19%), Positives = 86/221 (38%), Gaps = 5/221 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D A ++G + + E D ++ L E Sbjct: 4 LIVEDEAKTAAYLRKGLEENGFTTDVATDGETGLQFARHGGYDAIILDIML--PRRDGFE 61 Query: 63 LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120 + IR S ++ ++ + + ++G DD + KP E+LARV I R Sbjct: 62 ILAEIRRRDSHTAVLLLTARDQVTDRVAGLEAGADDYLVKPFAFSELLARVRTILRRGHA 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + + G G+ L +E R+L L G +++T I ++ + Sbjct: 122 RQPALIQIADLEIDLSGHRATRAGQALDLTPKEFRLLSLLARRAGDVISRTVIAEQVWDI 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + NVV+ H+ +LR KL + + + R +GY ++ Sbjct: 182 -NFDSGTNVVDVHMYRLRAKLDDPFSRRLIHTVRGVGYVLE 221 >gi|302542452|ref|ZP_07294794.1| transcriptional regulatory protein PcoR [Streptomyces hygroscopicus ATCC 53653] gi|302460070|gb|EFL23163.1| transcriptional regulatory protein PcoR [Streptomyces himastatinicus ATCC 53653] Length = 218 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 47/221 (21%), Positives = 92/221 (41%), Gaps = 9/221 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G +++ + D+ ++ L G Sbjct: 3 LLIVEDERRLALSLAKGLRAEGFAVDVVHDGREGLHRAQEGTYDLIVLDIML--PGMNGY 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119 + +RA P++ ++ + D+G DD + KP + ++ARV A+ RR Sbjct: 61 RVCGALRAAGHEVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARVRALLRRRG 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++ G + V R E G+ L +E +LE+L N G +K I ++ Sbjct: 121 SGASPVVRVGALAVDRGARRVERDGDEVSLTAKEFSVLEHLAMNGGDVCSKADILEHVWD 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 F + N+VE ++S LR+KL G +++ R GY + Sbjct: 181 -FAYDGDPNIVEVYVSALRRKL----GPGFIETVRGAGYRL 216 >gi|269120503|ref|YP_003308680.1| two component transcriptional regulator, winged helix family [Sebaldella termitidis ATCC 33386] gi|268614381|gb|ACZ08749.1| two component transcriptional regulator, winged helix family [Sebaldella termitidis ATCC 33386] Length = 219 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 48/221 (21%), Positives = 96/221 (43%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D +++ F + + + + D+ ++ Sbjct: 4 LLIVEDEKKIRELLKIYFLRENYKVSEAENGRIALEMMKEETFDIVLLDI--YMPELDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R IR S VP++ ++ ++ L ++ G DD + KP +LA++ I R+ V Sbjct: 62 DTCREIRKTSNVPVVILTALSDDESQLLAYEIGADDFIIKPFKKDILLAKIRRISERISV 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + + G + + D V +E IL YL+ N+G ++ I I+G + Sbjct: 122 NQHSYKFGGLEIDKDSYRILVDSREVKFAPKEFEILLYLIENKGVIKSRDDILIHIWG-Y 180 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 D V + VV++HI K+RKKL + D V + +GY + Sbjct: 181 DSEVFDRVVDNHIKKIRKKLGDYS--DYVKTVVSIGYKFEV 219 >gi|168214081|ref|ZP_02639706.1| DNA-binding response regulator [Clostridium perfringens CPE str. F4969] gi|170714439|gb|EDT26621.1| DNA-binding response regulator [Clostridium perfringens CPE str. F4969] Length = 223 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 40/225 (17%), Positives = 85/225 (37%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +G + L + D+ ++A L Sbjct: 3 ILVVDDEISILQLIKMNLEIEGHVPITAENALDALELVIKEKPDIIILDAML--PDISGF 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L I+ +P+I ++ + L G DD + KP + E++ R+ + + + Sbjct: 61 NLIPKIKNIDDIPIIMLTAKSDINDKLLGLQLGADDYITKPFNSTELILRINIVGKHISS 120 Query: 122 SNNRAETGPIRVF----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + D R ++ E L +E +L L N+ K ++ ++ + + Sbjct: 121 DSKKKVKDLTVGDLTLLLDERKALIKSEYINLTFKEFEVLRCLCQNKNKVFSREELLNKV 180 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +G +D V+ I +LRKKL + + + GY +D Sbjct: 181 WG-YDFEGTTRAVDILIQRLRKKLG--PCQNYIKTLYKAGYKLDE 222 >gi|167855905|ref|ZP_02478655.1| YgiX [Haemophilus parasuis 29755] gi|167852993|gb|EDS24257.1| YgiX [Haemophilus parasuis 29755] Length = 223 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 58/224 (25%), Positives = 103/224 (45%), Gaps = 9/224 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D L+ +G G S++ F + SSA D ++ L L Sbjct: 3 ILLIEDDPLIGEGLKLGLSKSGFSVDWFTDGKTGLDALSSAPYDAVVLDLTL--PKMDGL 60 Query: 62 ELPR-IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119 E+ + RA+ VP++ ++ +L + G DD + KP E++AR+ A I RR Sbjct: 61 EVLQSWRRANQDVPVLILTARDTLDERITGLQRGADDYLCKPFALAEVVARLQALIRRRY 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +N E ++ + R ++ + L RE +LE M N+ + + ++ I +Y Sbjct: 121 GHTNPVIEHSLVKFDPNQRKVFLREQEVTLTTREYNLLELFMHNKDRVLTRSFIEEKLY- 179 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 +D+ V N +E HI LR+KL G + + +GY++ N Sbjct: 180 TWDDEVSSNALEVHIYNLRQKL----GKQFIRTVHGVGYALGKN 219 >gi|126740175|ref|ZP_01755864.1| two-component response regulator [Roseobacter sp. SK209-2-6] gi|126718630|gb|EBA15343.1| two-component response regulator [Roseobacter sp. SK209-2-6] Length = 234 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 53/222 (23%), Positives = 103/222 (46%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A ++G +++ + ++A DV ++ L L Sbjct: 13 ILVVEDDKTTGPYVAAGLREEGHTVDLLANGREGLVQAAAADYDVLVLDRML--PDLDGL 70 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119 L + +R A ++ P I ++ + ++ ++G DD + KP E+ ARVAA+ RR Sbjct: 71 SLIKTLRGAGNRTPAIMLTAVSGVNDRIEGLEAGADDYLVKPFAFGELSARVAALARRPG 130 Query: 120 -KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + R G + + G+ PL RE +LE+L+ +G+ +T + A++ Sbjct: 131 LQQQETRLCVGDLEMDLVQHKVTRAGQEIPLLPREFTLLEHLLRRKGRVQTRTMLLEAVW 190 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + NVVE+HIS+LR K+ + +++ R GY I Sbjct: 191 DIT-FDPQTNVVETHISRLRAKVDRPFDNELIETVRGAGYRI 231 >gi|148653957|ref|YP_001281050.1| two component transcriptional regulator [Psychrobacter sp. PRwf-1] gi|148573041|gb|ABQ95100.1| two component transcriptional regulator, winged helix family [Psychrobacter sp. PRwf-1] Length = 240 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 36/231 (15%), Positives = 89/231 (38%), Gaps = 12/231 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D + + + + + + + + + I L+ + Sbjct: 5 ILLIEDDPDLAELISDYLAMNYYEVHHAPTGQEGLDILDAKERAIDLIILDLMLPDMDGM 64 Query: 62 ELPRIIR-----AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LA 110 ++ + IR ++VP++ ++ + + G DD ++KP RE+ + Sbjct: 65 QVCQKIRGGKNSQTNKVPIVMLTAKGDTTDRVLGLEMGADDYISKPFEPRELLARIRAVL 124 Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 R + ++ G + VF D + + + L + ++L Y + GK + + Sbjct: 125 RRHEQPNQADSQSDSLTFGRLSVFPDSHEVTIDDKPVRLTTHQFQLLHYFATHAGKVLNR 184 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 Q++ A+ + ++ HIS+LR + + + + R +GY Sbjct: 185 EQLWQAMPNDDSSDNIDRAIDVHISRLRALIEDNPRQPKRIITVRGVGYQF 235 >gi|270261003|ref|ZP_06189276.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270044487|gb|EFA17578.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 237 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 41/228 (17%), Positives = 86/228 (37%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + D+G + + D ++ L G L Sbjct: 7 ILIVEDDGDIAELLQLHLRDEGYDISHAADGNQGMAMLEQGGWDALILDLML--PGVDGL 64 Query: 62 ELPRI-IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-------REILARVA 113 E+ R P+I IS S + + G DD + KP + + R Sbjct: 65 EICRRARNMTRYTPIIIISARSSEVHRVLGLELGADDYLAKPFSMLELVARVKALFRRQE 124 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 A+ R L++ + + R+ ++ + L RE +L + + GK ++ + Sbjct: 125 AMSRNLRMDAGTLSFDGLTIDPIAREVQLNRQPIDLTPREFDLLYFFARHPGKVFSRLSL 184 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + ++G + E+ V +HI++LR K+ N + + +GY Sbjct: 185 LNQVWG-YQHEGYEHTVNTHINRLRIKIESNPAEPLRILTVWGMGYKF 231 >gi|153813051|ref|ZP_01965719.1| hypothetical protein RUMOBE_03459 [Ruminococcus obeum ATCC 29174] gi|160894161|ref|ZP_02074939.1| hypothetical protein CLOL250_01715 [Clostridium sp. L2-50] gi|149830853|gb|EDM85943.1| hypothetical protein RUMOBE_03459 [Ruminococcus obeum ATCC 29174] gi|156864194|gb|EDO57625.1| hypothetical protein CLOL250_01715 [Clostridium sp. L2-50] Length = 236 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 42/220 (19%), Positives = 94/220 (42%), Gaps = 6/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + + +G ++ + + D+ + Sbjct: 17 ILIVEDDKELSQLFQKVLEKNGYQVKSASDGAQALEVLDKEYIDLIISDIM--MPVMDGY 74 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-ARVAAIYRRL 119 EL +R A Q+P++ I+ S F SG DD + KP++ E++ A + R Sbjct: 75 ELVSELRSAGYQIPVLMITAKGSFDDMRQGFFSGSDDYMVKPVNVNEMVLRVGALLRRAQ 134 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++ ++ G D E LP+++ +L L A+ G+ K Q+ ++G Sbjct: 135 ILNEHKIVIGSTEFDYDAMTVTTDKESLVLPKKQFLLLYKLAASPGRTFTKQQLMDEVWG 194 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 ++ + + +E HI +LR++ ++ F+ + + R +GY Sbjct: 195 -YETEADPHTIEVHIGRLRERFKDNPDFE-IVTMRGIGYK 232 >gi|158319177|ref|YP_001511684.1| two component transcriptional regulator [Alkaliphilus oremlandii OhILAs] gi|158139376|gb|ABW17688.1| two component transcriptional regulator, winged helix family [Alkaliphilus oremlandii OhILAs] Length = 231 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 42/228 (18%), Positives = 87/228 (38%), Gaps = 10/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + + G + S + ++ L G Sbjct: 7 ILIVEDDMDINNLLSKMLSKRGYHVRQAYSGTEALMCLEHYEFQLVLLDLML--PGMVGE 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115 E+ IR +P+I IS + T ++ + G DD + KP E+ R + Sbjct: 65 EIICQIRKLKNMPIIVISAKLAQDTKIEVLNLGADDFIVKPFDVNEVLARVEAQLRRYMV 124 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + N + + D + ++G + +E ILE LM + K K +F Sbjct: 125 FSNPRDKQNILTYKDLVLNRDTVEVTMKGLPISVTAKEFAILELLMEHPKKVFTKANLFE 184 Query: 176 AIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDW 222 ++ + ++N V HIS LR KL + + + + +G+ ++ Sbjct: 185 QVW-NDEFLGDDNTVNVHISNLRSKLAKADPATEYIHTVWGIGFKMNE 231 >gi|257069090|ref|YP_003155345.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Brachybacterium faecium DSM 4810] gi|256559908|gb|ACU85755.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Brachybacterium faecium DSM 4810] Length = 279 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 50/228 (21%), Positives = 89/228 (39%), Gaps = 17/228 (7%) Query: 4 LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63 +I+D + +G + + R DV ++ L G LE+ Sbjct: 19 VIEDEPTITRAIADRLTAEGWEVSTALDGPSGVRTVAEVRPDVVVLDVML--PGFDGLEV 76 Query: 64 PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123 R I+A VP++ ++ L G DD + KP RE++AR+ A+ RR++ + Sbjct: 77 CRRIQADEPVPVLMLTARDDETDMLVGLGVGADDYMTKPFSIRELVARLKALLRRVRRAA 136 Query: 124 NRAETGPIRV----------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + GR G L E +L L G + + Q+ Sbjct: 137 PPPPSESEKQEALQIGDLVIDRAGRRVMRAGAPAHLTPTEFDLLLCLANAPGTVLTREQL 196 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + ++ D V+SH+ LR+KL G D V + +GY+++ Sbjct: 197 LADVWDWVDATG-TRTVDSHVKALRRKL----GSDLVRTVHGVGYALE 239 >gi|291456488|ref|ZP_06595878.1| DNA-binding response regulator MtrA [Bifidobacterium breve DSM 20213] gi|291381765|gb|EFE89283.1| DNA-binding response regulator MtrA [Bifidobacterium breve DSM 20213] Length = 240 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 40/228 (17%), Positives = 82/228 (35%), Gaps = 16/228 (7%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + +G + + D+ ++ L LE Sbjct: 16 LVVEDEPTLATAIAQRITAEGWTARVAGDGASAVQAALQLKPDLVIMDIML--PVMDGLE 73 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA--------- 113 + I A VP++ ++ + +G DD + KP RE++AR Sbjct: 74 ATKRIVAERPVPVLILTARDDETDKVIGLGAGADDYMTKPFSMRELIARCKALLRRVERA 133 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + + + G + + R V GE L E +L L + + ++ Sbjct: 134 KVIAKNSENEKILDFGSMVIDPAQRIVTVNGEQVHLTPTEFDLLATLARRPKSVLTREKL 193 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ D + V+SH+ LR KL G D + + +GY+ + Sbjct: 194 LEEVWDWVDASG-TRTVDSHVKALRHKL----GADMIRTVHGVGYAFE 236 >gi|255102347|ref|ZP_05331324.1| two-component response regulator [Clostridium difficile QCD-63q42] gi|255308246|ref|ZP_05352417.1| two-component response regulator [Clostridium difficile ATCC 43255] Length = 223 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 41/223 (18%), Positives = 92/223 (41%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++ + G + + + S D+ ++ Sbjct: 4 ILIVEDEKRMQSIIVEYMQKGGYTCITADDGVEALTILKSNNIDLMILDIM--MPYLDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R+ R + +P+I ++ + L ++ G DD + KP + +LA+V A+ RR Sbjct: 62 SVCRVSREMTNIPIIILTAKGEEEDKLKGYEYGADDYITKPFSPKVLLAKVNALLRRYTT 121 Query: 122 SNNRAETGPIRVFSD--GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + ++F R V+ ++ L +E +L M N + ++ ++ + I+G Sbjct: 122 DIPKNSLSLGKIFIMVASRQVYVEDKLIDLTYKEFELLRLFMENPNQVFSREKLLNCIWG 181 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D V++HI LRKKL ++ + + GY + Sbjct: 182 -YDFEGNTRTVDTHIKTLRKKLGSEGHH--IVTLIRSGYKFEV 221 >gi|158339279|ref|YP_001520456.1| two component transcriptional regulator [Acaryochloris marina MBIC11017] gi|158309520|gb|ABW31137.1| two component transcriptional regulator, winged helix family [Acaryochloris marina MBIC11017] Length = 226 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 43/226 (19%), Positives = 90/226 (39%), Gaps = 13/226 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ +D + D A G + L S + D+ ++ L + L Sbjct: 4 ILIAEDNPHIVDFLKAGLKAHGFTALVAEDGGQAANLACSDQFDLLILDLGL--PRKDGL 61 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAI 115 + R IR + +P+I ++ + T+ + G +D + KP R + Sbjct: 62 TVLREIRGQGELLPIIVLTARDGVDDTVQALERGANDYMTKPFRFEELLARIKVQLRDRR 121 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 S + G + + R V V L +E + E L+ + + ++K Q+ + Sbjct: 122 IGAQPPSETHLQVGNLSLDLLTRQAWVGNRVVELSAKEFILAEVLLRHPMQVMSKEQLLN 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G +D N++E +I LR+K G +++ R +GY ++ Sbjct: 182 RVWG-YDYDPGSNIIEVYIRHLRRK----FGSQYIETVRGMGYRLN 222 >gi|167647248|ref|YP_001684911.1| two component transcriptional regulator [Caulobacter sp. K31] gi|167349678|gb|ABZ72413.1| two component transcriptional regulator, winged helix family [Caulobacter sp. K31] Length = 239 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 51/230 (22%), Positives = 97/230 (42%), Gaps = 13/230 (5%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + +++D A ++D + L +G + G E + L + R D+ ++ GE Sbjct: 6 LIAVVEDDAEIRDLTLGLLRREGYEVVGCADAEAFDRLAARRRVDLVLLDIM--MPGEDG 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L + R +RA +V ++ ++ + + G DD ++KP + RE+LARV AI RR + Sbjct: 64 LSVCRRLRAAGEVAILMVTAKGDDIDRVIGLEIGADDYLSKPYNPRELLARVKAILRRTR 123 Query: 121 VSNNRAETGPIRVFSDGRDP---------EVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + P V + G L E +L + + + +++ Sbjct: 124 EVHRAPSAPPGEVLGFAGWRLDTASRDLTDPDGRPVVLTGGEHDLLMAFLRHPQRVLSRD 183 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220 Q+ G E + V+ +S+LR+KL + G + + R GY Sbjct: 184 QLLDWTRGRSAEPFD-RAVDVLLSRLRRKLGDASGGAALIKTVRGGGYLF 232 >gi|133757364|ref|YP_001096244.1| hypothetical protein pLEW279b_p02 [Corynebacterium sp. L2-79-05] gi|296119388|ref|ZP_06837951.1| DNA-binding response regulator VicR [Corynebacterium ammoniagenes DSM 20306] gi|110084139|gb|ABG49293.1| hypothetical protein [Corynebacterium sp. L2-79-05] gi|295967617|gb|EFG80879.1| DNA-binding response regulator VicR [Corynebacterium ammoniagenes DSM 20306] Length = 268 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 46/224 (20%), Positives = 83/224 (37%), Gaps = 10/224 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + G ++ DV ++ L LE Sbjct: 44 LVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGL--PELDGLE 101 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR S ++ ++ S + G DD + KP RE++ RV A+ RR + S Sbjct: 102 VCRRIRTFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRRPRTS 161 Query: 123 NNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + V L R E +L L G+ + + + + Sbjct: 162 TTPPQVTTPLIVGDLILDPVAHQVRVGETTVELTRTEFELLVALALRPGQVLTRHDLVTE 221 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYS 219 ++ +E +V+ HI LR+KL G +D+ R +GY Sbjct: 222 VWDTT-WVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGYR 264 >gi|78778516|ref|YP_396628.1| two component transcriptional regulator [Prochlorococcus marinus str. MIT 9312] gi|78712015|gb|ABB49192.1| two component transcriptional regulator, winged helix family [Prochlorococcus marinus str. MIT 9312] Length = 260 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 41/229 (17%), Positives = 84/229 (36%), Gaps = 10/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 +LI+D ++D G ++ + L D+ ++ L G + Sbjct: 5 ILLIEDDRDMRDLVARHLEHSGFDVQKAEDGIKGQALALQYSPDLILLDLMLPSVDGLTL 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R S +P++ I+ L+ + F+SG DD + KP E+ R+ A+ RR Sbjct: 65 CQRLRRDERTSNIPILMITALGGLKDKVTGFNSGADDYITKPFDLEELHVRIKALLRRTN 124 Query: 121 VSNNRAETGPIRVFS-------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + + + + L E ++ L+ G+ V+ I Sbjct: 125 RAQLNSSNQQEILNYGPLTLVPERFEAIWFESPVRLTHLEFELIHCLLQRHGQTVSPALI 184 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221 ++G ++ + + HI LR KL + + GY ++ Sbjct: 185 LKEVWG-YEPDDDIETIRVHIRHLRTKLEPDPRKPIYIKTVYGAGYCLE 232 >gi|294813210|ref|ZP_06771853.1| Transcriptional regulatory protein cseB [Streptomyces clavuligerus ATCC 27064] gi|326441678|ref|ZP_08216412.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294325809|gb|EFG07452.1| Transcriptional regulatory protein cseB [Streptomyces clavuligerus ATCC 27064] Length = 232 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 44/231 (19%), Positives = 92/231 (39%), Gaps = 20/231 (8%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 + ++D ++++ G + + R D++ ++ + G + Sbjct: 7 LFVEDDDVIREATQLALERHGFVVTAMPDGLLGLEAFRADRPDIALLDVMV--PGLDGVS 64 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R IR S VP+I +S + ++G DD V KP ++AR+ A+ RR + Sbjct: 65 LCRRIRDESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRRFGRA 124 Query: 123 NNRAE-------------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 G + + ++G + G L E R+L G ++ Sbjct: 125 GAGDTAGSGQEAPGALLSFGDLEIDTEGMEVRKGGVPVALTPTEMRLLLEFSTAPGTVLS 184 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + ++ ++ + + VV+ H+ +LR K+ G D +++ R GY + Sbjct: 185 RDRLLERVWD-YGWGGDTRVVDVHVQRLRAKI----GQDRIETVRGFGYKL 230 >gi|126697892|ref|YP_001086789.1| two-component response regulator [Clostridium difficile 630] gi|115249329|emb|CAJ67142.1| Two-component response regulator [Clostridium difficile] Length = 233 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 46/228 (20%), Positives = 93/228 (40%), Gaps = 9/228 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++IDD + + +S + L R +S + ++ + Sbjct: 5 LIIDDDKELCALMKKCVEQENLSAITAHCGAEGLHLVDKNRHTLSLVILDIMMPDIDGFQ 64 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121 + + IR S +P+I ++ + G DD + KP E++ARV ++ RR + Sbjct: 65 VLKKIRETSNIPVIMLTAKNDEDDKVSGLRLGADDYLTKPFSINELMARVNSLIRRYTML 124 Query: 122 ------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + + R V L +E +L +L +N+G+ K QI++ Sbjct: 125 NPAFITDTDFIIINGMIIDKTNRIVSVNNIPVQLTSKEFDLLAFLASNKGRVFTKKQIYT 184 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDW 222 ++ + A +++ + S ISKLRKK+ + + R +GY + Sbjct: 185 QVW-EEEYAFDDSNIMSFISKLRKKIEPDPNHPFYILTVRGVGYRFNK 231 >gi|110804550|ref|YP_688070.1| DNA-binding transcriptional activator CusR [Shigella flexneri 5 str. 8401] gi|110614098|gb|ABF02765.1| putative 2-component transcriptional regulator [Shigella flexneri 5 str. 8401] Length = 227 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 37/224 (16%), Positives = 98/224 (43%), Gaps = 6/224 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G ++ ++ L + D+ ++ L Sbjct: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIML--PDVNGW 60 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118 ++ R++R A+ +P++ ++ +++ + + G DD + KP E+LARV Sbjct: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLQRGA 120 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + ++ + + V R G L +E +LE+ + ++G+ + ++ I S ++ Sbjct: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + + + N ++ + +LR K+ N + + R +GY ++ Sbjct: 181 DM-NFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223 >gi|145294164|ref|YP_001136985.1| hypothetical protein cgR_0122 [Corynebacterium glutamicum R] gi|57157979|dbj|BAD83953.1| two-component system response regulator [Corynebacterium glutamicum] gi|140844084|dbj|BAF53083.1| hypothetical protein [Corynebacterium glutamicum R] Length = 240 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 46/224 (20%), Positives = 83/224 (37%), Gaps = 10/224 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + G ++ DV ++ L LE Sbjct: 16 LVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGL--PELDGLE 73 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR S ++ ++ S + G DD + KP RE++ RV A+ RR + S Sbjct: 74 VCRRIRTFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSVRELVTRVHAVLRRPRTS 133 Query: 123 NNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + V L R E +L L G+ + + + + Sbjct: 134 TTPPQVTTPLIVGDLILDPVAHQVWVGETTVELTRTEFELLVALALRPGQVLTRHDLVTE 193 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYS 219 ++ +E +V+ HI LR+KL G +D+ R +GY Sbjct: 194 VWDTT-WVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGYR 236 >gi|18309218|ref|NP_561152.1| DNA-binding response regulator [Clostridium perfringens str. 13] gi|18143894|dbj|BAB79942.1| two-component response regulator [Clostridium perfringens str. 13] Length = 223 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 40/225 (17%), Positives = 85/225 (37%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +G + L + D+ ++A L Sbjct: 3 ILVVDDEVSILQLIKMNLEIEGHIPITAENALDALELVIKEKPDIIILDAML--PDISGF 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L I+ +P+I ++ + L G DD + KP + E++ R+ + + + Sbjct: 61 NLIPKIKNIDDIPIIMLTAKSDINDKLLGLQLGADDYITKPFNSTELILRINIVGKHISS 120 Query: 122 SNNRAETGPIRVF----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + D R ++ E L +E +L L N+ K ++ ++ + + Sbjct: 121 DSKKKVKDLTIGDLTLLLDERKALIKSEYINLTFKEFEVLRCLCQNKNKVFSREELLNKV 180 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +G +D V+ I +LRKKL + + + GY +D Sbjct: 181 WG-YDFEGTTRAVDILIQRLRKKLG--PCQNYIKTLYKAGYKLDE 222 >gi|331698892|ref|YP_004335131.1| winged helix family two component transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326953581|gb|AEA27278.1| two component transcriptional regulator, winged helix family [Pseudonocardia dioxanivorans CB1190] Length = 224 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 44/220 (20%), Positives = 81/220 (36%), Gaps = 10/220 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + D DG + + ++ L G +E Sbjct: 6 LVVEDEPAIADLIRLYLRKDGFGVHVEHDGAAGLDAVRRLAPVAVVLDVGL--PGLDGVE 63 Query: 63 LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118 + R +R A P++ ++ + + G DD V KP RE + V Sbjct: 64 VCRRLRAADDWTPVLFVTARDDEVDRILGLEMGADDYVTKPFSPRELVARVRTVLRRSGT 123 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 G + V D R L E +L +LM G+ ++ Q+ SA++ Sbjct: 124 GAPREEVLRVGEVEVQVDRRRVRAGTTEVALTATEFALLAHLMRAPGRVYSRDQLLSAVW 183 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 G + V+ H+++LR KL + P+ + R +GY Sbjct: 184 GYTASSG-ARTVDVHVAQLRAKLGDAS---PIRTVRGVGY 219 >gi|119715849|ref|YP_922814.1| response regulator receiver [Nocardioides sp. JS614] gi|119536510|gb|ABL81127.1| response regulator receiver [Nocardioides sp. JS614] Length = 225 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 47/220 (21%), Positives = 90/220 (40%), Gaps = 5/220 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + + +G ++ + DV ++ L + Sbjct: 4 LMVEDEVRLAETVSRGLRAEGFVVDTIHDGAEGLAEAQLRDYDVIVLDIML--PSMNGYD 61 Query: 63 LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R +R VP++ ++ D D G DD + KP ++AR+ A+ RR Sbjct: 62 VCRELRKAGVWVPILMLTAKDGEYDEADALDLGADDYLTKPFSFVVLVARLRALVRRGAP 121 Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 T + R G L RE +L +LM + G+ ++KT I +++ L Sbjct: 122 KRPSVLTVGDLTLDPATRMVGRGGTEIALTPREFALLHFLMRHPGEVLSKTAIVQSVWDL 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + +ENVVE ++ LR+K+ G + + R GY + Sbjct: 182 -NYDGDENVVEVYVGYLRRKIDQPFGTTTIQTMRGAGYRL 220 >gi|284031362|ref|YP_003381293.1| winged helix family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283810655|gb|ADB32494.1| two component transcriptional regulator, winged helix family [Kribbella flavida DSM 17836] Length = 244 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 45/226 (19%), Positives = 93/226 (41%), Gaps = 11/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + A G + D+ ++ G Sbjct: 16 LLVVDDEPNIVELLSASLRFAGYDVTTAAHGTEALRKAREVEPDLVVLDVM--MPGLDGF 73 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------A 114 E+ R +R VP++ ++ +++ + +G DD V KP E++ARV Sbjct: 74 EVVRRLRGEDRHVPVLFLTARDAVEDKVLGLQTGGDDYVTKPFSLDELVARVRALLRRSG 133 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + + + D + G+ L E ++L L+ N + ++K Q+ Sbjct: 134 HREQAAAEPAVLKYADLELNEDSYEVFKAGQAVQLSLTEFKLLRCLLENAERVMSKGQLL 193 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 SA++ +D A + VVES++S LR+K+ + + + R +GY + Sbjct: 194 SAVW-NYDFAGDAGVVESYVSYLRRKV-DTGEPKLLHTVRGVGYVL 237 >gi|153002704|ref|YP_001368385.1| osmolarity response regulator [Shewanella baltica OS185] gi|160877440|ref|YP_001556756.1| osmolarity response regulator [Shewanella baltica OS195] gi|217975277|ref|YP_002360028.1| osmolarity response regulator [Shewanella baltica OS223] gi|304412087|ref|ZP_07393697.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS183] gi|307305982|ref|ZP_07585728.1| two component transcriptional regulator, winged helix family [Shewanella baltica BA175] gi|151367322|gb|ABS10322.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS185] gi|160862962|gb|ABX51496.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS195] gi|217500412|gb|ACK48605.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS223] gi|304349637|gb|EFM14045.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS183] gi|306911475|gb|EFN41901.1| two component transcriptional regulator, winged helix family [Shewanella baltica BA175] gi|315269642|gb|ADT96495.1| two component transcriptional regulator, winged helix family [Shewanella baltica OS678] Length = 241 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 35/229 (15%), Positives = 84/229 (36%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ + G + + E + L + ++ L GE L Sbjct: 8 ILVVDDDMRLRALLERYLMEQGYQVRSAANAEQMDRLLERENFHLLVLDLML--PGEDGL 65 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112 + R +R P++ ++ + + G DD + KP + RE + + Sbjct: 66 SICRRLRQQGNPIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQT 125 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + G + R+ E L E +L+ L+ + + +++ + Sbjct: 126 QDVPGAPAQQEAQISFGEFSLDLATREMYHGDESIALTSGEFAVLKVLVTHPREPLSRDK 185 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + + G D + E ++ +S+LR+ + + + + LGY Sbjct: 186 LMNLARGR-DYSALERSIDVQVSRLRRLIEKDPANPRYIQTVWGLGYVF 233 >gi|77459117|ref|YP_348623.1| two component transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77383120|gb|ABA74633.1| response regulator protein [Pseudomonas fluorescens Pf0-1] Length = 233 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 41/226 (18%), Positives = 85/226 (37%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + + + +G S+ + D+ ++ L G L Sbjct: 4 ILLVEDDTALAELISSYLERNGYSVSVIGRGDHVRERARLNPPDLVILDLML--PGLDGL 61 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAI 115 ++ R++RA S P++ ++ + + G DD V KP R + Sbjct: 62 QVCRLLRADSATLPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLLRRSS 121 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 +N+R G + + R + + L E +L L + G+ +++ QI Sbjct: 122 LGEPMTANDRILMGNLCIDLSERTVTWREQPVELSSGEYNLLVVLARHAGEVLSRDQILQ 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220 + G+ + + V+ ISKLR+K + + + GY Sbjct: 182 RLRGI-EFNGTDRSVDVAISKLRRKFDDHAGEARKIKTVWGKGYLF 226 >gi|298290746|ref|YP_003692685.1| two component transcriptional regulator [Starkeya novella DSM 506] gi|296927257|gb|ADH88066.1| two component transcriptional regulator, winged helix family [Starkeya novella DSM 506] Length = 263 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 45/222 (20%), Positives = 86/222 (38%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D D F + G ++ + E L DV ++ L L Sbjct: 40 LLIVEDDRDAADYLRKAFREAGHVVDVASDGEEGLMLAREGGYDVLLVDRML--PRRDGL 97 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118 L +R + P + +S + + +G DD + KP E+ A Sbjct: 98 ALIAELRGRGDKTPALILSALGQVDDRVTGLRAGGDDYLPKPYAFSELLARVEALARRGG 157 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + ++ + + G+ L RE R+LEYLM + G+ V +T + ++ Sbjct: 158 PQAADTVYRVADLELDRLAHRCTRAGQEIVLQPREFRLLEYLMRHAGQVVTRTMLLENVW 217 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + NV++ H+S+LR K+ + + R GY I Sbjct: 218 D-YHFDPQTNVIDVHVSRLRSKIDKGFDPPLLHTVRGAGYII 258 >gi|294629736|ref|ZP_06708296.1| DNA-binding response regulator RegX3 [Streptomyces sp. e14] gi|292833069|gb|EFF91418.1| DNA-binding response regulator RegX3 [Streptomyces sp. e14] Length = 234 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 44/223 (19%), Positives = 85/223 (38%), Gaps = 6/223 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L +D A + + +G +E D+ ++ L G LE Sbjct: 14 LLAEDDASISEPLARALRREGYEVEVREDGPTALDAGMQGGVDLVVLDLGL--PGMDGLE 71 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-HREILARVAAIYRRLK 120 + R +RA P++ ++ T+ D+G DD V KP + A + R Sbjct: 72 VARRLRADGHTVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGSA 131 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 T +R+ + + E L +E +L L+ + G+ V + Q+ ++ Sbjct: 132 EPQQPPATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 191 Query: 181 FDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222 + ++ HIS LRKKL + + + R +G+ + Sbjct: 192 TWWS-STKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEK 233 >gi|258593550|emb|CBE69891.1| response regulator in two-component regulatory system with PhoR (or CreC), regulation of Pi uptake (OmpR family) [NC10 bacterium 'Dutch sediment'] Length = 246 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 47/228 (20%), Positives = 90/228 (39%), Gaps = 13/228 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +LI+D A + + I +G + + L +A+ DV ++ L LE Sbjct: 9 LLIEDDASIAEPLIFGLRREGFHVLHAGDGLQGKALALTAKPDVVLLDIML--PKLSGLE 66 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARVA 113 + +IR S VP++ ++ + G DD + KP +E ++ Sbjct: 67 VCELIRRESVVPIVMLTAKGQELDRVRGLQGGADDYIVKPFSFQELVARIQAILRRRQLD 126 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 +R I + R+ + + L RE +L LM + GK +++ +I Sbjct: 127 RGDALPSGDRDRIAITSIVIDRVAREVWRKKKKLELSWREFELLWLLMEHVGKALSRHEI 186 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 I+G D + ++ +I LR+K+ N + + + R GY Sbjct: 187 LDRIWGE-DWVGDPKTLDVYIRWLREKIEKNPSAPEYIQTVRGYGYRF 233 >gi|229020091|ref|ZP_04176872.1| DNA-binding response regulator [Bacillus cereus AH1273] gi|229026320|ref|ZP_04182679.1| DNA-binding response regulator [Bacillus cereus AH1272] gi|229032496|ref|ZP_04188464.1| DNA-binding response regulator [Bacillus cereus AH1271] gi|228728865|gb|EEL79873.1| DNA-binding response regulator [Bacillus cereus AH1271] gi|228735036|gb|EEL85672.1| DNA-binding response regulator [Bacillus cereus AH1272] gi|228741201|gb|EEL91418.1| DNA-binding response regulator [Bacillus cereus AH1273] Length = 231 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 42/226 (18%), Positives = 91/226 (40%), Gaps = 9/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G + + ++ + + ++ L Sbjct: 4 ILIVEDDPNISSLLQSHIQKYGYEAVVAENFDDIMESFNAVKPHLVLLDVNL--PKFDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 R IR S P+I IS + +SG DD + KP H+ ++A++ RR+ Sbjct: 62 YWCRQIRHESTCPIIFISARAGEMEQIMAIESGADDYITKPFHYDVVMAKIKGQLRRIYG 121 Query: 122 SNNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + I F + + E L ++E + E L++ + ++ + + Sbjct: 122 DYAPNISERIVEVEGLKLFPERPEIHFGAEQVLLTKKEAILAEMLLSKFPRTASREDLLA 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 A++ + VEEN + +I++LRKK + +++ R LGY + Sbjct: 182 ALWD-DESFVEENTLNVNITRLRKKFNELGIENAIETVRGLGYRFN 226 >gi|229175552|ref|ZP_04303062.1| DNA-binding response regulator [Bacillus cereus MM3] gi|228607948|gb|EEK65260.1| DNA-binding response regulator [Bacillus cereus MM3] Length = 231 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 42/226 (18%), Positives = 91/226 (40%), Gaps = 9/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G + + ++ + + ++ L Sbjct: 4 ILIVEDDPNISSLLQSHIQKYGYEAVVAENFDDIMESFNAVKPHLVLLDVNL--PKFDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 R IR S P+I IS + +SG DD + KP H+ ++A++ RR+ Sbjct: 62 YWCRQIRHESTCPIIFISARAGEMEQIMAIESGADDYITKPFHYDVVMAKIKGQLRRIYG 121 Query: 122 SNNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + I F + + E L ++E + E L++ + ++ + + Sbjct: 122 DYAPNISERIVEVEGLKLFPERPEIHFGTEQVLLTKKEAILAEMLLSKFPRTASREDLLA 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 A++ + VEEN + +I++LRKK + +++ R LGY + Sbjct: 182 ALWD-DESFVEENTLNVNITRLRKKFNELGIENAIETVRGLGYRFN 226 >gi|76787576|ref|YP_328862.1| DNA-binding response regulator [Streptococcus agalactiae A909] gi|47087863|gb|AAT10379.1| DNA binding response regulator [Streptococcus agalactiae] gi|76562633|gb|ABA45217.1| DNA-binding response regulator [Streptococcus agalactiae A909] gi|229893727|gb|ACQ90232.1| DNA-binding protein [Streptococcus agalactiae] Length = 217 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 47/219 (21%), Positives = 96/219 (43%), Gaps = 6/219 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++++G A ++G + + L+ + + L+ Sbjct: 3 ILVVDDEDMIREGVAAFLREEGYHVILAKDGQEA--LEKFHEFPIHLMVLDLMLPKRSGF 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + I + +P+I +S +T + FD DD V KP ++ R+ A+ RR V Sbjct: 61 EVLKEINGNHDIPVIVLSALGDEETQMQVFDLYADDHVTKPFSLVLLVKRIQALLRRYYV 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + V V+ E + +E +L+ L+ ++ + +++ QI +I F Sbjct: 121 VEDIWHYQDVAVDFTSYQARVKNEEVAIKPKELLVLKCLIQHKNQVLSREQILESISNDF 180 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + VV+ +I LRKKL D + + + GY I Sbjct: 181 ADLPLDRVVDVYIRNLRKKLDL----DCIVTVKNAGYKI 215 >gi|325686293|gb|EGD28332.1| phosphate regulon response regulator [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 225 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 45/220 (20%), Positives = 92/220 (41%), Gaps = 5/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++D +++ + + GF+ + ++R D+ ++ L G ++ Sbjct: 4 IWCVEDDESIREIEMYTLESMNFKVRGFDDGQSFFKALDNSRPDLVILDLMLPDEDGSEI 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119 L R A +P+I S + + DSG DD + KP E+++RV A+ R Sbjct: 64 LHRLRSTSATEDLPVIVASAKTAEYDKVKNLDSGADDYLTKPFGMMEMVSRVKAVLRRTN 123 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + ++ E I++ + G L +E +L+ L+ + G ++ +I I+ Sbjct: 124 RKKEDKIEKDGIKILLKRHEVFENGHQVDLTLKEYGLLKLLITHPGTVFSREEIMDQIW- 182 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 E V+ H+ LR+KL +++ R +GY Sbjct: 183 ETGFYGETRTVDVHVRTLRQKLGEAG--KHIETVRGVGYR 220 >gi|22537765|ref|NP_688616.1| DNA-binding response regulator CsrR [Streptococcus agalactiae 2603V/R] gi|25011712|ref|NP_736107.1| DNA-binding response regulator CsrR [Streptococcus agalactiae NEM316] gi|76788698|ref|YP_330242.1| DNA-binding response regulator CsrR [Streptococcus agalactiae A909] gi|76799420|ref|ZP_00781570.1| CsrR [Streptococcus agalactiae 18RS21] gi|77405803|ref|ZP_00782887.1| DNA-binding response regulator CsrR [Streptococcus agalactiae H36B] gi|77408493|ref|ZP_00785231.1| DNA-binding response regulator CsrR [Streptococcus agalactiae COH1] gi|77411918|ref|ZP_00788249.1| DNA-binding response regulator CsrR [Streptococcus agalactiae CJB111] gi|77414229|ref|ZP_00790391.1| DNA-binding response regulator CsrR [Streptococcus agalactiae 515] gi|22534656|gb|AAN00489.1|AE014265_18 DNA-binding response regulator CsrR [Streptococcus agalactiae 2603V/R] gi|24413252|emb|CAD47331.1| Unknown [Streptococcus agalactiae NEM316] gi|76563755|gb|ABA46339.1| DNA-binding response regulator CsrR [Streptococcus agalactiae A909] gi|76585229|gb|EAO61837.1| CsrR [Streptococcus agalactiae 18RS21] gi|77159718|gb|EAO70867.1| DNA-binding response regulator CsrR [Streptococcus agalactiae 515] gi|77162015|gb|EAO72995.1| DNA-binding response regulator CsrR [Streptococcus agalactiae CJB111] gi|77172935|gb|EAO76066.1| DNA-binding response regulator CsrR [Streptococcus agalactiae COH1] gi|77175590|gb|EAO78375.1| DNA-binding response regulator CsrR [Streptococcus agalactiae H36B] gi|319745623|gb|EFV97924.1| DNA-binding response regulator [Streptococcus agalactiae ATCC 13813] Length = 229 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 50/225 (22%), Positives = 90/225 (40%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + +G + + D+ ++ L Sbjct: 5 ILIIEDEKNLARFVSLELLHEGYDVVVETNGREGLDTALEKDFDLILLDLML--PEMDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R ++A ++ ++ S+ + D G DD + KP E+LARV AI+RR ++ Sbjct: 63 EITRRLQAEKTTYIMMMTARDSVMDIVAGLDRGADDYIVKPFAIEELLARVRAIFRRQEI 122 Query: 122 SNNRAETGPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 E G F R E L +RE +L LM N + + + ++ Sbjct: 123 ETKTKEKGDSGSFRDLSLNTHNRSAMRGDEEISLTKREFDLLNVLMTNMNRVMTREELLE 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +D A E NVV+ +I LR K+ + + R +GY I Sbjct: 183 HVW-KYDVAAETNVVDVYIRYLRGKIDIPGRESYIQTVRGMGYVI 226 >gi|331085248|ref|ZP_08334334.1| hypothetical protein HMPREF0987_00637 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330408031|gb|EGG87521.1| hypothetical protein HMPREF0987_00637 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 223 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 38/223 (17%), Positives = 80/223 (35%), Gaps = 6/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + G + + ++ L Sbjct: 4 ILIVEDDETIARLLREHLEKWGYQARCAEDFKQVAKEFKEYAPHLVLMDIGL--PFYNGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 IR S VP++ +S + G DD V KP + ++ Sbjct: 62 YWCTEIRKTSNVPILFLSSMSDNMNIVMAIQMGGDDFVTKPFDLNVLTVKIQALLRRTYA 121 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + S + E + + Q L + + +IL+ LM G V + +I ++ Sbjct: 122 FQGSASVMEHKGLMLNLSDASVTFQNRKIELTKNDYKILQILMERAGTIVKREEIMQRLW 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 DE +++N + ++++LRKKL + + +K+ +GY I+ Sbjct: 182 -ESDEFIDDNTLTVNMTRLRKKLEELGVQEFIKTKKGIGYIIE 223 >gi|317500916|ref|ZP_07959126.1| DNA-binding response regulator PhoP [Lachnospiraceae bacterium 8_1_57FAA] gi|331089184|ref|ZP_08338087.1| hypothetical protein HMPREF1025_01670 [Lachnospiraceae bacterium 3_1_46FAA] gi|316897619|gb|EFV19680.1| DNA-binding response regulator PhoP [Lachnospiraceae bacterium 8_1_57FAA] gi|330405961|gb|EGG85487.1| hypothetical protein HMPREF1025_01670 [Lachnospiraceae bacterium 3_1_46FAA] Length = 224 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 42/221 (19%), Positives = 94/221 (42%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L +D + A D+ S++ + E ++ + D ++ + L Sbjct: 3 ILLAEDEKDLNKIITARLKDEYYSVDSCFDGKEAEEYLTAVKYDAVILDIM--MPKKDGL 60 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119 + + +R P+I ++ S++ + D+G +D + KP E+LARV + + Sbjct: 61 SVLKKMRRKKDSTPVILLTAKDSVEDRVAGLDAGANDYLVKPFAFEELLARVRVLLRKPE 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++ + V D E L +E +L Y++ N G +++ ++ ++ Sbjct: 121 EMPKTCYTIADLEVHLDTHKVIRGKEEIRLSGKEFALLRYMVQNAGIVLSRDRLEQHLW- 179 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D NV++ +I LRKK+ + + + R +GY + Sbjct: 180 NYDYMGSSNVIDVYIRYLRKKIDDGREKKLIHTVRGVGYVL 220 >gi|315170598|gb|EFU14615.1| response regulator receiver domain protein [Enterococcus faecalis TX1342] Length = 230 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 43/226 (19%), Positives = 88/226 (38%), Gaps = 9/226 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++I+D + D + +++ + + + D+ ++ L E Sbjct: 6 LIIEDDPSIADLQKDYLEINDMTVTIEHDGKKGLEAALNEPFDLIILDVML--PTMDGFE 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120 + R IR Q P++ +S + G DD + KP E++AR A R + Sbjct: 64 ICRAIRKKKQTPIMIVSAKKEDIDKIRGLGLGADDYIIKPFSPNELVARAKAHMNRYQLL 123 Query: 121 ----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + I V + V +E ++L +LM + + K ++F + Sbjct: 124 SKAEQPPQLLKINEIAVDTAAHKVVVLENEVIFTSKEYKLLVFLMEHPNRVWNKEELFES 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221 ++G E + V HI ++R+KL+ D P+++ GY + Sbjct: 184 VWGFDALDTEVSTVVVHIKRIREKLKKANLSDSPIETLWGSGYRFN 229 >gi|304408338|ref|ZP_07389985.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] gi|304342627|gb|EFM08474.1| two component transcriptional regulator, winged helix family [Paenibacillus curdlanolyticus YK9] Length = 229 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 46/226 (20%), Positives = 88/226 (38%), Gaps = 7/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + A G F E ++ + + ++ L G Sbjct: 4 IMVVEDEPAISRVLAAYIKKAGYECAVFTQGELAVEQLTTVQPALILLDVML--PGLDGW 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R S P+I ++ + L +SG DD + KP E++AR+ AI RR Sbjct: 62 EVLREVRNRSTCPVIMLTAKGEIGDRLLGLNSGADDYIIKPFEPVEVIARIQAILRRPSH 121 Query: 122 SNNRAETGPI---RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + R+ R + GE L ++ +L +L + + + Q+ ++ Sbjct: 122 ALITDHQKQYGSLRIDFKSRSVSLNGETLSLTPKDLALLLFLAEHPNQIFHREQLIERVW 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223 G+ D + V+ I +LR+ L + + R GY N Sbjct: 182 GI-DYDGSDRAVDHAIKRLRQSLHPMPPEDGGIRTLRGTGYQFYAN 226 >gi|182437261|ref|YP_001824980.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|178465777|dbj|BAG20297.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] Length = 250 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 45/233 (19%), Positives = 90/233 (38%), Gaps = 22/233 (9%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D A ++ G ++ + D+ ++ L + Sbjct: 22 LVVEDDATIRRAVQLALERYGYRVDVAADGLDGLEAFRAGAHDLLILDVML--PELDGIG 79 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R IR S VP++ +S + ++G DD V KP+ ++AR+ A+ RR Sbjct: 80 LCRRIREESPVPVLMMSARGDALDVVAGLEAGADDYVIKPVDTGVMVARIRALLRRATFR 139 Query: 123 N---------------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167 + G + V + G + GE L E R+L A G Sbjct: 140 PDPEGPAAAGSSGRADHVLVFGDLSVDTLGMEVSRAGEPVSLTPTELRLLLEFAAAPGSV 199 Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + ++ ++ + + VV+ + +LRKK+ G +++ R GY + Sbjct: 200 LDRRRLLREVWD-YGWEGDTRVVDLCVLRLRKKI----GSGRIETVRGFGYKL 247 >gi|167758878|ref|ZP_02431005.1| hypothetical protein CLOSCI_01223 [Clostridium scindens ATCC 35704] gi|167663618|gb|EDS07748.1| hypothetical protein CLOSCI_01223 [Clostridium scindens ATCC 35704] Length = 235 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 41/231 (17%), Positives = 86/231 (37%), Gaps = 15/231 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D +++G G + + ++ ++ ++ Sbjct: 7 LIVEDDKEIREGVEIYLKSQGYQVFQAADGVEGLKIIEKEEIHLAIVDVM--MPRMDGIQ 64 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + +R P+I +S + + G DD V KP E+LARV + RR + Sbjct: 65 MTIKLREKYDFPVIFLSAKSEEVDKIMGLNMGADDYVTKPFTPMELLARVNSQLRRYRKF 124 Query: 123 NNRAETGPI----------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + D + V GE + E +IL LM N G+ + + Sbjct: 125 AEKLNQREASSSVYTIGGLEINEDTVEVTVDGESVKMTPMEYKILLLLMKNPGRVFSAEE 184 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 I+ ++ + AV + + H+ +R+K+ N + +GY I+ Sbjct: 185 IYERVWN--ERAVNTDTIMVHVRNIREKIEINPKEPKYLKVVWGVGYKIEK 233 >gi|319936946|ref|ZP_08011356.1| DNA-binding response regulator [Coprobacillus sp. 29_1] gi|319807882|gb|EFW04461.1| DNA-binding response regulator [Coprobacillus sp. 29_1] Length = 219 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 50/219 (22%), Positives = 100/219 (45%), Gaps = 6/219 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L++D L++ + F G ++ + L D+ ++ G E Sbjct: 4 LLVEDEKLIRLFIVEYFSKQGAAVVEASDGYEALSLLDET-YDIVLLDIM--MPGIDGYE 60 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + ++IR S +P++ IS + L ++ G DD ++KP + A+ A+ +RL Sbjct: 61 VCKLIRQKSDIPILFISALSEDENKLKGYELGADDFISKPFTPSLLYAKCNALLKRLNKG 120 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 N + G I + D + V L +E IL Y + N+ K +++ Q+ ++G +D Sbjct: 121 NESLDVGMIHIDEDTHEVFVNDVEIQLSHKEYLILIYFIENKRKILSRDQLLDHVWG-YD 179 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ +V++++ KLRKKL + + +GY D Sbjct: 180 YYGDQRIVDTYVKKLRKKLLEASS--YIQTVVKIGYMFD 216 >gi|315150222|gb|EFT94238.1| response regulator receiver domain protein [Enterococcus faecalis TX0012] Length = 230 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 43/226 (19%), Positives = 88/226 (38%), Gaps = 9/226 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++I+D + D + +++ + + + D+ ++ L E Sbjct: 6 LIIEDDPSIADLQKDYLEINDMTVTIEHDGKNGLEAALNEPFDLIILDVML--PTMDGFE 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120 + R IR Q P++ +S + G DD + KP E++AR A R + Sbjct: 64 ICRAIRKKKQTPIMIVSAKKEDIDKIRGLGLGADDYIIKPFSPNELVARAKAHMNRYQLL 123 Query: 121 ----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + I V + V +E ++L +LM + + K ++F + Sbjct: 124 SKAEQPPQLLKINEIAVDTAAHKVFVLENEVIFTSKEYKLLVFLMEHPNRVWNKEELFES 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221 ++G E + V HI ++R+KL+ D P+++ GY + Sbjct: 184 VWGFDALDTEVSTVVVHIKRIREKLKKANLSDSPIETLWGSGYRFN 229 >gi|317056279|ref|YP_004104746.1| winged helix family two component transcriptional regulator [Ruminococcus albus 7] gi|315448548|gb|ADU22112.1| two component transcriptional regulator, winged helix family [Ruminococcus albus 7] Length = 236 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 50/231 (21%), Positives = 80/231 (34%), Gaps = 12/231 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + L +G S + I+ L Sbjct: 8 ILVVDDDRDIVAAIAKLLELEGYKTVRAYDGIEALEKLSENDIQLILIDVM--MPRLDGL 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 IR +P+I +S + G DD + KP + E+ ARV + RR Sbjct: 66 SAIMKIRDKRNIPIIVLSAKSEDTDKILGLSMGADDYITKPYNPMELTARVKSSLRRYMQ 125 Query: 122 SNNRAETGPIRV--------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + V + V GE L E +ILE LM N G + +I Sbjct: 126 LGDIGSINKTDVIKIGGLELDKGAKSITVDGEPVKLTATELKILELLMENAGHVFSAEEI 185 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223 + ++ AVE N V HI +R+K+ + + +GY I+ N Sbjct: 186 YRRVWNEDAYAVE-NTVMVHIRHIREKIEIDPKEPRYLKVVWGIGYKIEKN 235 >gi|302381990|ref|YP_003817813.1| transcriptional regulator [Brevundimonas subvibrioides ATCC 15264] gi|302192618|gb|ADL00190.1| two component transcriptional regulator, winged helix family [Brevundimonas subvibrioides ATCC 15264] Length = 226 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 57/220 (25%), Positives = 105/220 (47%), Gaps = 9/220 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L++D A + GD G +++ E +L + DV ++ L + Sbjct: 4 LLVEDDADLSRQLKMALGDAGYAVDHAADGEEAHFLGDTEPYDVVVLDLGL--PKIDGVS 61 Query: 63 LP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 + R R P++ ++ + + FD+G DD + KP H E+LAR+ A+ RR Sbjct: 62 VLERWRRDGKTTPVLILTARGAWSDKVSGFDAGADDYLTKPFHTEELLARLRALLRRSAG 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 +++ G +R+ V GE L E R+L Y+M ++G+ +++T++ +Y Sbjct: 122 IASATLSCGGLRLDPKAARATVNGEPLRLTSLEYRLLHYMMMHQGRVISRTELVEHLYDQ 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D + N +E I +LRKK+ G D +++ R LGY + Sbjct: 182 -DFDRDSNTIEVFIGRLRKKV----GSDRIETVRGLGYRL 216 >gi|167590482|ref|ZP_02382870.1| two component transcriptional regulator, winged helix family protein [Burkholderia ubonensis Bu] Length = 277 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 48/228 (21%), Positives = 87/228 (38%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A + D D+ + L D ++ L G L Sbjct: 44 ILIVEDDADIADVLSLHLRDERYEVVHSADGAEGLRLLEQGNWDALILDLML--PGVDGL 101 Query: 62 ELPRI-IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R P+I S S + + G DD + KP E++ARV A+ RR+ Sbjct: 102 EICRRARGMQRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVD 161 Query: 121 VSNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + V R+ V G L RE +L + + GK ++ + Sbjct: 162 ALARDSRVDAGTLDVAGLSVDPIAREASVDGVRIDLTPREFDLLYFFARHPGKVFSRMDL 221 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 +A++G + E+ V +HI++LR K+ + + + GY + Sbjct: 222 LNAVWG-YQHEGYEHTVNTHINRLRAKIEADPAEPVRILTVWGRGYKL 268 >gi|15673576|ref|NP_267750.1| two-component system regulator [Lactococcus lactis subsp. lactis Il1403] gi|12724600|gb|AAK05692.1|AE006390_2 two-component system regulator [Lactococcus lactis subsp. lactis Il1403] gi|326407060|gb|ADZ64131.1| Two-component system regulator [Lactococcus lactis subsp. lactis CV56] Length = 230 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 84/224 (37%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + +G + E ++ +S D+ ++ L Sbjct: 6 ILIIEDEKNLARFVSLELEHEGYATEIKDNGRSGLEEATSKDYDLILLDLML--PELDGF 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAIY 116 E+ R +R P+I ++ S + D G DD + KP R + Sbjct: 64 EVARRLRKEKDTPIIMMTARDSTMDRVAGLDIGADDYITKPFAIEELLARVRAFFRREEH 123 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + R +V L RRE +L LM N G V + + S Sbjct: 124 GHAVERAENTSFRDLVIDKTNRTVHRGKKVIDLTRREYDLLLTLMQNVGDVVTREHLVSQ 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G ++E E NVV+ +I LR K+ + + + R LGY + Sbjct: 184 VWG-YEEGTETNVVDVYIRYLRNKIDVEGQDSYIQTVRGLGYVM 226 >gi|116512403|ref|YP_809619.1| DNA-binding response regulator [Lactococcus lactis subsp. cremoris SK11] gi|116108057|gb|ABJ73197.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactococcus lactis subsp. cremoris SK11] Length = 230 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 84/224 (37%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + +G + E ++ +S D+ ++ L Sbjct: 6 ILIIEDEKNLARFVSLELEHEGYATEIKDNGRSGLEEATSKDYDLILLDLML--PELDGF 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAIY 116 E+ R +R P+I ++ S + D G DD + KP R + Sbjct: 64 EVARRLRKEKDTPIIMMTARDSTMDRVAGLDIGADDYITKPFAIEELLARVRAFFRREEH 123 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + R +V L RRE +L LM N G V + + S Sbjct: 124 GHAVERAENTSFRDLVIDKTNRTVHRGKKVIDLTRREYDLLLTLMQNVGDVVTREHLVSQ 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G ++E E NVV+ +I LR K+ + + + R LGY + Sbjct: 184 VWG-YEEGTETNVVDVYIRYLRNKIDVEGQDSYIQTVRGLGYVM 226 >gi|325843788|ref|ZP_08168030.1| response regulator receiver domain protein [Turicibacter sp. HGF1] gi|325489284|gb|EGC91662.1| response regulator receiver domain protein [Turicibacter sp. HGF1] Length = 235 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 46/231 (19%), Positives = 89/231 (38%), Gaps = 15/231 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD +++ +G+ ++ E L + + ++ + Sbjct: 7 LVVDDEREIREAIRIYLRGEGIETIMASNGEEALDLMKTNEIHLILMDVM--MPKMDGIV 64 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121 +IR S VP+I ++ + G DD + KP + E++ARV + RR + Sbjct: 65 TTSLIREFSNVPIIMLTAKSEDTDKIMGLSLGADDYITKPFNPMELVARVKSQLRRYLML 124 Query: 122 ----------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + E +R+ + V L E +IL LM N+G+ + Sbjct: 125 GAKSSNQQTTDEDTIEINGLRINLSTKQTFVDDIEVRLTPTEFKILSLLMRNKGRVFSIN 184 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 I+ ++ E N V HI K+R+K+ N + +GY I+ Sbjct: 185 DIYERVWDEPGYNAE-NTVAVHIRKIREKIEINPKEPRYLKVVWGVGYKIE 234 >gi|253576274|ref|ZP_04853605.1| two component transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251844401|gb|EES72418.1| two component transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 224 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 43/220 (19%), Positives = 91/220 (41%), Gaps = 6/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + A+ G + + L D+ ++ Sbjct: 4 ILVVEDDVNTQRLICAVLQRGGYNSHVAGNGIEALNLMEERHFDLVVLDLM--MPEMDGY 61 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119 +L +R A +P++ ++ ++ + F G DD + KP +E+L R+ A + R Sbjct: 62 QLCEDLRSAGDNIPILMVTAAHDIKFKHNGFLVGTDDYMTKPFDEQELLFRIKALLRRAQ 121 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + R G + + + LP++E +L L++ K + Q+ I+G Sbjct: 122 IANERRLVVGETVLDYNALTVIRGNQQISLPQKEFYLLFKLLSYPNKIFTRLQLLEEIWG 181 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 D +++ + HI++LR K R+ F+ + + R LGY Sbjct: 182 -PDTETDDHTLNVHINRLRDKFRDSPDFE-IVTVRGLGYK 219 >gi|116496108|ref|YP_807842.1| DNA-binding response regulator [Lactobacillus casei ATCC 334] gi|116106258|gb|ABJ71400.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus casei ATCC 334] Length = 233 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 48/226 (21%), Positives = 98/226 (43%), Gaps = 5/226 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D A + D F + +S+ L + ++ I + Sbjct: 5 LLLVEDEAALADSLTTEFELENMSVIWAKDGAEALTLFKNNEGKINVIILDWMLPKLDGF 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 + R IR SQVP+I ++ + + G DD + KP E++ARV R+ Sbjct: 65 SVLRKIRQSSQVPIIMLTARDYIGDKVAGLTGGADDYITKPFEMEELVARVEVALRHNRQ 124 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + V +D + + + PL +RE +L L+A++ + ++ + +A++ Sbjct: 125 AVSPATIFQVDDLLVDTDNKRVQRGEVIMPLTQREYELLVELVAHQDEACSRDDLLAAVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDWN 223 G D + N+++ +I LR K+ + G + + R +GY + N Sbjct: 185 GT-DFDGQPNILDVYIRNLRHKIDDHSGSKKLIHTVRGVGYMLSAN 229 >gi|326324767|dbj|BAJ84573.1| TCS response regulator CovR-like protein [Streptococcus equi subsp. zooepidemicus] Length = 228 Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 90/224 (40%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + +G + + D+ ++ L Sbjct: 5 ILIIEDEKNLARFVSLELQHEGYEVTVEVNGREGLETALEKDFDLILLD--LKLPEMDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R ++ ++ ++ S+ + D G DD + KP E+LAR+ AI+RR + Sbjct: 63 EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122 Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + R + L +RE +L LM N + + + ++ S Sbjct: 123 ESEKKTPSQGVYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +DEAVE NVV+ +I LR K+ + + R +GY I Sbjct: 183 VW-KYDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225 >gi|297192903|ref|ZP_06910301.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|297151548|gb|EDY66528.2| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 234 Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 44/233 (18%), Positives = 88/233 (37%), Gaps = 22/233 (9%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 + ++D ++++ DG ++ + R D++ ++ + G + Sbjct: 7 LFVEDDDVIREATQLALERDGFAVTAVPDGLLGLEAFRADRPDIALLDVMV--PGLDGVS 64 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI---------------HHRE 107 L R IR S VP+I +S + ++G DD V KP Sbjct: 65 LCRRIRDESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRRFGHA 124 Query: 108 ILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167 A + G + V +DG + GE L E R+L + G Sbjct: 125 GGAAGDGGPAGRQEQGGALTFGDLEVDTDGMEVRRAGEPVSLTPTEMRLLLEFSSAPGTV 184 Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +++ ++ ++ + + VV+ H+ +LR K+ G D +++ R GY + Sbjct: 185 LSRDKLLDRVWD-YGWGGDTRVVDVHVQRLRTKI----GQDRIETVRGFGYKL 232 >gi|255527226|ref|ZP_05394109.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|255509090|gb|EET85447.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] Length = 235 Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 38/228 (16%), Positives = 83/228 (36%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSA-REDVSAIEAFLIGKGEKV 60 ++++D + + +G + + + ++ + Sbjct: 9 ILVVEDDKEISTLISKVLEKEGYEMVQAFDGRNAMDKFNFDGEFQLIVLDLMV--PFVDG 66 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-------A 113 E+ R +R S VP++ IS + + G DD + KP E + R+ Sbjct: 67 FEIIRRVRQKSTVPILVISAKNTEMDKISAISMGADDYIVKPFSLNEFVVRIKALIRRYI 126 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 ++ + + V + ++ + E IL+ + N K K+QI Sbjct: 127 YFNSEQEMHESAINYKDLVVDIEAHTILKGNQLIKVTPIEFEILKLFLLNPNKVFTKSQI 186 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + +I+G D +N V HI +LR K+ + + + + +GY + Sbjct: 187 YDSIWGQ-DALRNDNTVMVHIKRLRDKIEHDADSPEYISTVWGVGYKL 233 >gi|237784979|ref|YP_002905684.1| two-component system response regulator [Corynebacterium kroppenstedtii DSM 44385] gi|237757891|gb|ACR17141.1| two-component system, response regulator [Corynebacterium kroppenstedtii DSM 44385] Length = 234 Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 46/223 (20%), Positives = 89/223 (39%), Gaps = 9/223 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD A + + G + + + S D ++ Sbjct: 11 LVVDDEANIVELLKVSLKFQGFEVATASDGGEALDIARSFHPDAFILDVM--MPRMDGFT 68 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L +RA P++ ++ ++ + G DD V KP E++ R+ I RR+ Sbjct: 69 LLSKLRADGHDAPVLFLTAKDAVDDRIHGLTIGADDYVTKPFSLEEVVTRLKVILRRVSP 128 Query: 122 SNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + + GE L E ++L YLM N ++K +I + Sbjct: 129 PEVDDDQRITYADLTLDDNSHEVTKAGEYVDLSPTEFKLLRYLMVNAEVVLSKAKILDHV 188 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + +D + NVVES++S LR+K+ +K + + R +GY + Sbjct: 189 W-NYDFGGDGNVVESYVSYLRRKV-DKDEPHLIQTVRGVGYVL 229 >gi|271970059|ref|YP_003344255.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270513234|gb|ACZ91512.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 235 Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 46/225 (20%), Positives = 95/225 (42%), Gaps = 10/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + A G + + R D+ ++ L Sbjct: 9 LLIVEDEPNILELLAASLRFAGFGVNTAGNGTDAVAAVQRHRPDLIVLDVML--PDMDGF 66 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119 ++ R +R P++ ++ + + + +G DD V KP E++AR+ A+ RR Sbjct: 67 DVVRRLRGGGTDTPVVFLTARDATEDKIRGLTAGGDDYVTKPFSLEEVVARIRAVLRRTG 126 Query: 120 ----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 R I + + + +G L E ++L Y MAN G+ ++K QI Sbjct: 127 AGDLPARPPRLTFADIELDEESHEVWRRGRAVALSPTEFKLLRYFMANAGRVLSKAQILD 186 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +D + +VES++S LR+K+ + + + R +GY + Sbjct: 187 HVWD-YDFRGDVGIVESYVSVLRRKI-DNADPRLIHTLRGVGYVL 229 >gi|227532872|ref|ZP_03962921.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227189477|gb|EEI69544.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 241 Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 47/226 (20%), Positives = 96/226 (42%), Gaps = 5/226 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D A + D F + +S+ L + ++ I + Sbjct: 13 LLLVEDEAALADSLTTEFELENMSVIWAKDGAEALTLFKNNEGKINVIILDWMLPKLDGF 72 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 + R IR SQVP+I ++ + + G DD + KP E++ARV R+ Sbjct: 73 SVLRKIRQSSQVPIIMLTARDYIGDKVAGLTGGADDYITKPFEMEELVARVEVALRHNRQ 132 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + V +D + + + PL +RE +L L+A++ + ++ + A++ Sbjct: 133 AVSPATIFQVDDLLVDTDNKRVQRGEVIMPLTQREYELLVELVAHQDEACSRDDLLDAVW 192 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDWN 223 D + N+++ +I LR K+ + G + + R +GY + N Sbjct: 193 -ETDFDGQPNILDVYIRNLRHKIDDHSGSKKLIHTVRGVGYMLSAN 237 >gi|187928863|ref|YP_001899350.1| winged helix family two component heavy metal response transcriptional regulator [Ralstonia pickettii 12J] gi|187725753|gb|ACD26918.1| two component heavy metal response transcriptional regulator, winged helix family [Ralstonia pickettii 12J] Length = 228 Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 43/223 (19%), Positives = 97/223 (43%), Gaps = 6/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G ++ + L + D+ ++ L Sbjct: 3 LLVVEDEPKTGEYLQQGLTEAGFVVDLACNGTDGRHLAMTGEYDLLVLDVML--PDVDGW 60 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118 ++ + +RA VP++ ++ S+ + + G DD + KP E+LARV Sbjct: 61 QIVQSLRASEQAVPVLFLTARDSVADRVKGLELGADDYLVKPFAFAELLARVRTLLRRGN 120 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 V+ +R + + + R G+ PL +E +LE L+ RG+ + ++ I S ++ Sbjct: 121 SAVTADRIQVADLVLDLARRRASRGGQKIPLTSKEFSLLELLVRRRGEVLPRSLIASQVW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + + NV++ I +LR K+ + + + R +GY ++ Sbjct: 181 DM-NFDSDTNVIDVAIRRLRAKIDDHFEPKLIQTVRGMGYVLE 222 >gi|317055319|ref|YP_004103786.1| winged helix family two component transcriptional regulator [Ruminococcus albus 7] gi|315447588|gb|ADU21152.1| two component transcriptional regulator, winged helix family [Ruminococcus albus 7] Length = 224 Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 39/224 (17%), Positives = 92/224 (41%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 + +DD A ++ +G + + + D+ ++ Sbjct: 4 ILAVDDEAKIRTIIREYAEFEGYEVAEAADGMEAVEMVKNDDFDIIVMDIM--MPRLDGY 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 + I+ ++P+I +S L F+ G+DD + KP +E++ARV + Sbjct: 62 SACKEIQKIKKIPVIMLSARGEEYDKLFGFEIGIDDYMVKPFSPKELMARVRAVLNRAKA 121 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + + + + R+ ++ GE + +E +L YL+ N +++ ++ ++ Sbjct: 122 SGNTEDIIKYQGLEINFTAREVKIDGEKVSMTPKEYDLLFYLVRNMNIALSREKLLEEVW 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 G FD ++ +++HI LR L + + + R +GY + Sbjct: 182 G-FDFYGDDRTIDTHIKMLRNSLGPY--RNLIVTLRGMGYKFEK 222 >gi|332526928|ref|ZP_08403021.1| two component transcriptional regulator [Rubrivivax benzoatilyticus JA2] gi|332111370|gb|EGJ11354.1| two component transcriptional regulator [Rubrivivax benzoatilyticus JA2] Length = 223 Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 55/225 (24%), Positives = 107/225 (47%), Gaps = 11/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ +D ++ DG + G +++ S + S+ D+ ++ L Sbjct: 3 ILIAEDDQVLADGLLRSLRASGYAVDQVGSGTEADAALSAHEFDLVILDLGL--PKLHGF 60 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119 ++ + +RA VP++ ++ S++ + D G DD + KP +E+ ARV A R L Sbjct: 61 DVLKRLRARGASVPVLILTAADSVEQRVKGLDLGADDYMAKPFSLQELEARVRALTRRGL 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI-- 177 +++ + GP+ + GR + ++ L RE +LE L+ G+ V+K Q+ + Sbjct: 121 GTASSVIKHGPLTFDATGRVAYLNDQMIELSARELSLLEVLLQRSGRLVSKDQLVERLCE 180 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +G E V N +E +I +LRKK+ G + + R LGY ++ Sbjct: 181 WG---EEVSNNAIEVYIHRLRKKIEQ--GPVRIATVRGLGYCLEK 220 >gi|312959727|ref|ZP_07774244.1| two component transcriptional regulator, winged helix family [Pseudomonas fluorescens WH6] gi|311286444|gb|EFQ65008.1| two component transcriptional regulator, winged helix family [Pseudomonas fluorescens WH6] Length = 234 Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 46/223 (20%), Positives = 90/223 (40%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD ++ G + + + + D+ ++ L Sbjct: 10 ILVIDDEPQIRKFLRISLASQGYKVIEAGTGNEGLAQAALNKPDLLVLDLGL--PDMDGQ 67 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R R S VP++ +S S ++ D G +D V KP +E LARV A+ R+ Sbjct: 68 QVLREFREWSTVPVLVLSVRASEGQKVEALDGGANDYVTKPFGIQEFLARVRALLRQAPA 127 Query: 122 SNNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + GP+ V R + G L R+E +L L + G+ + + Q+ I+ Sbjct: 128 GEAQEAALSFGPLTVDLAYRRVLLDGAEVALTRKEYAVLAQLARHAGRVITQQQLLKDIW 187 Query: 179 GLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220 G + + + + LR+KL + + ++ +GY + Sbjct: 188 GPTHTE-DSHYLRIVVGHLRQKLADDPTQPRFIVTEAGVGYRL 229 >gi|283768370|ref|ZP_06341282.1| response regulator receiver domain protein [Bulleidia extructa W1219] gi|283104762|gb|EFC06134.1| response regulator receiver domain protein [Bulleidia extructa W1219] Length = 218 Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 43/220 (19%), Positives = 98/220 (44%), Gaps = 6/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D +++DG + G + + + ++ + L Sbjct: 3 ILVVEDDQIIRDGICEYLSEFGYRMIEAKDGREALFHFEHQDIQLVILDIQI--PFMNGL 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IR S +P++ ++ + + +D F S D + KP + ARV ++ ++ Sbjct: 61 EVLKKIREKSALPILMLTAFSDEEYKIDAFTSLADGYIEKPFSLPVLKARVDSLIKKHFG 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + E + V +++ + + +E IL+YL+ N G + +TQI ++ Sbjct: 121 QIEKFEYKNVEVNFTSYTAKLKNKDVDINAKELEILKYLLDNEGHALTRTQIIDNVWKDT 180 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +E + V++ +I +LRKKL D + + R +GY ++ Sbjct: 181 EEIPYDRVIDVYIKELRKKLEL----DCIVTIRNVGYKLE 216 >gi|257439293|ref|ZP_05615048.1| regulatory protein VanR [Faecalibacterium prausnitzii A2-165] gi|257198168|gb|EEU96452.1| regulatory protein VanR [Faecalibacterium prausnitzii A2-165] Length = 242 Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 45/231 (19%), Positives = 80/231 (34%), Gaps = 15/231 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ +D ++DG L +G + + + R +V + ++ G L Sbjct: 6 ILIAEDDPDIRDGVRILLSGEGYHIIEAENGTRALEVF---RPEVDLVILDIMMPGMSGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + +R S VP++ ++ L +G DD + KP E+ ARV A+ RR V Sbjct: 63 RVCEELRKLSTVPILFLTAKSQESDKLLGLTAGGDDYLPKPFSFAELSARVKALLRRYCV 122 Query: 122 SNNRAETGPIRVFSDGRDP-----------EVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + + V GE L E +IL LM + + Sbjct: 123 YQGKGQAPARAENLTLCSHGVKLALDCNRVWVDGEEIDLTETEYKILRLLMQSPQRIFPV 182 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 I+ ++ V HI LR K+ + + + GY Sbjct: 183 QVIYEDVWQEPYFYTSNGTVMVHIRNLRMKIEKDPQNPARLQTMWGKGYRF 233 >gi|255523659|ref|ZP_05390626.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|255512714|gb|EET88987.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] Length = 228 Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 48/226 (21%), Positives = 90/226 (39%), Gaps = 10/226 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++I+D + +G ++ DV ++ L G+ E Sbjct: 5 LIIEDDNNIAALERDYLQLNGYKVDIEQDGISGLKRALLGVYDVVVVDLML--PGKDGYE 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121 + + IR ++P+I +S + G DD + KP E++AR+ + R + Sbjct: 63 IVKAIRDKFEIPIIIVSAKNEDIDKIRGLGFGADDYLTKPFSPAELVARIRSHIMRYERL 122 Query: 122 -----SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + + +D V G+ L +E +L +L +N K QIFS+ Sbjct: 123 SGKKVTLEIISHKAMEIQTDSHKVFVNGKEIFLTTKEYELLVFLASNPNIVFTKDQIFSS 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 I+G D + V HI KLRKK+ + + +++ GY + Sbjct: 183 IWGE-DYCGDTATVAVHIQKLRKKIEKDSGNPEYIETIWGTGYRFN 227 >gi|237794328|ref|YP_002861880.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] gi|229261381|gb|ACQ52414.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] Length = 228 Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 51/224 (22%), Positives = 98/224 (43%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D V + A +G + + S + ++ L Sbjct: 4 ILIIEDEKRVSEVLKAYLEKEGYKVYCTTKGLEGIEIFKSIDIKLIILDLML--PDISGE 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR---- 117 E+ RIIR S V + ++ +L ++ + G D+ + KP RE+ ARV A++R Sbjct: 62 EVCRIIRQSSDVHIFMLTAKGTLNDRIEGLNIGADEYLIKPFSPRELTARVNALFRRLST 121 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 SN + G + + D R +V G+ + E IL L++N+GK +++ Q+ + I Sbjct: 122 YNSTSNLIFDDGRLSIDYDKRVVKVNGKEVSITPNEFDILYTLVSNKGKVLSREQLINKI 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 +G+ D + ++ HI +RKK+ + + +GY Sbjct: 182 FGI-DFEGYDRTIDVHIKNIRKKIEEDTKNPKYIVTVMKVGYKF 224 >gi|52140668|ref|YP_086162.1| DNA-binding response regulator [Bacillus cereus E33L] gi|51974137|gb|AAU15687.1| DNA-binding response regulator [Bacillus cereus E33L] Length = 231 Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 42/226 (18%), Positives = 91/226 (40%), Gaps = 9/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G + + ++ + + ++ L Sbjct: 4 ILIVEDDPNISSLLQSHIQKYGYEAVVAENFDDIMESFNTVKPHLVLLDVNL--PKFDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 R IR S P+I IS + +SG DD + KP H+ ++A++ RR+ Sbjct: 62 YWCRQIRHESTCPIIFISARAGEMEQIMAIESGADDYITKPFHYDVVMAKIKGQLRRIYG 121 Query: 122 SNNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + I F + + E L ++E + E L++ + ++ + + Sbjct: 122 DYAPNISERIVEVEGLKLFPERPEIHFGSEQVLLTKKEAILAEMLLSKFPRTASREDLLA 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 A++ + VEEN + +I++LRKK + +++ R LGY + Sbjct: 182 ALWD-DESFVEENTLNVNITRLRKKFNELGIENAIETVRGLGYRFN 226 >gi|28211098|ref|NP_782042.1| transcriptional regulatory component of sensory transduction system [Clostridium tetani E88] gi|28203538|gb|AAO35979.1| transcriptional regulatory component of sensory transduction system [Clostridium tetani E88] Length = 230 Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 41/225 (18%), Positives = 96/225 (42%), Gaps = 6/225 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D +++ +G +L+ +S++ D+ ++ L Sbjct: 4 ILLVEDDSILAYSIEYTLNGEGFNLKCADSIKKARDNFKENSFDLIILDVML--PDGNGY 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 + + IR S+VP+I ++ + D G DD + KP +E+++R+ + Sbjct: 62 DFCKEIRKASEVPVIFLTACDEEANVVIGLDIGADDYITKPFRIKELISRIRAILRRSKT 121 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + +G I+V + E + L E R+L + + + +++ I ++ Sbjct: 122 FSKDLDLLISGDIKVQTLQGKIEKNDKEIILTALEYRLLLIFINHPKQILSRNIILEELW 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDW 222 E V++N + +I +LR+K+ + + + R LGY ++ Sbjct: 182 DAEGEFVDDNTLSVYIRRLREKIEDNAGEPKYITTHRGLGYRWNY 226 >gi|281419285|ref|ZP_06250301.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum JW20] gi|281407151|gb|EFB37413.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum JW20] Length = 231 Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 89/228 (39%), Gaps = 10/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD + D +G ++ ++ + + + ++ L Sbjct: 6 ILVCDDDKAIVDALEIYLKQEGYNVVKAHTGKQALKALEEEKIHLVLMDVM--MPELDGL 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 IR +P+I +S + + G DD V KP + E++ARV + +RR Sbjct: 64 SATVKIREELNIPIIILSAKSEDTDKIIGLNFGADDYVTKPFNPLELVARVKSQFRRYTQ 123 Query: 122 SNNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + ++ ++ V GE+ L E I+ +LM N GK + QI+ Sbjct: 124 LGGAERKSGVLKNGGLELDTEAKELRVDGELVKLTATEYGIVLFLMKNAGKVFSIDQIYE 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 ++ + EN V HI ++R+K+ N + +GY ++ Sbjct: 184 NVWKEPAYS-SENTVAVHIRRIREKIEINPKEPKYLKVVWGIGYKMEK 230 >gi|107023112|ref|YP_621439.1| two component transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116686646|ref|YP_839893.1| two component transcriptional regulator [Burkholderia cenocepacia HI2424] gi|170735251|ref|YP_001774365.1| two component transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|105893301|gb|ABF76466.1| two component transcriptional regulator, winged helix family [Burkholderia cenocepacia AU 1054] gi|116652361|gb|ABK13000.1| two component transcriptional regulator, winged helix family [Burkholderia cenocepacia HI2424] gi|169821289|gb|ACA95870.1| two component transcriptional regulator, winged helix family [Burkholderia cenocepacia MC0-3] Length = 239 Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 49/228 (21%), Positives = 89/228 (39%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A + D D+ + L D ++ L G L Sbjct: 7 ILIVEDDADIADVLSLHLRDERYEVVHSADGAEGLRLLEQGNWDALILDLML--PGVDGL 64 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R RA P+I S S + + G DD + KP E++ARV A+ RR+ Sbjct: 65 EICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVD 124 Query: 121 VSNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + R+ V G L RE +L + + GK ++ + Sbjct: 125 ALARDSRIDAGTLDVAGLAIDPIAREASVDGARLDLTPREFDLLYFFARHPGKVFSRMDL 184 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 +A++G + E+ V +HI++LR K+ + + + GY + Sbjct: 185 LNAVWG-YQHEGYEHTVNTHINRLRAKIEADPAEPVRILTVWGRGYKL 231 >gi|296393295|ref|YP_003658179.1| transcriptional regulator [Segniliparus rotundus DSM 44985] gi|296180442|gb|ADG97348.1| two component transcriptional regulator, winged helix family [Segniliparus rotundus DSM 44985] Length = 250 Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 40/225 (17%), Positives = 84/225 (37%), Gaps = 8/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + G + ++ + +V ++ L Sbjct: 4 ILVVDDEPQILRALRINLTARGFDVTTASTGAGALRAAAQCHPEVVLLDLGL--PDMDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117 E+ +R +++P+I +S +D D+G DD V KP + A V Sbjct: 62 EVLAGLRGWTKIPVIVLSARTDSSEKVDALDAGADDYVTKPFGMDELLARLRAAVRRGAN 121 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 V + + L E +LE L+ N+GK V++ +I S + Sbjct: 122 NQPGGEPVVAADSFVVDLVAKKVTKDDKEVHLTPTEWGVLELLVRNQGKLVSQKEILSEV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 +G E + + ++++LR+KL + + ++ +GY + Sbjct: 182 WGPS-YKTETHYLRVYLAQLRRKLEADPANPRHLLTEAGMGYRFE 225 >gi|293376811|ref|ZP_06623031.1| response regulator receiver domain protein [Turicibacter sanguinis PC909] gi|292644563|gb|EFF62653.1| response regulator receiver domain protein [Turicibacter sanguinis PC909] Length = 230 Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 43/226 (19%), Positives = 102/226 (45%), Gaps = 11/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++ G ++ + E DV ++ L + Sbjct: 5 ILVVEDEFSIQRILQYDLTQSGFLVDLASDGEEGLKKALVNDYDVILLDIML--PKKDGF 62 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119 + + +RA + ++ +S + D G DD + KP RE+++++ AI RR Sbjct: 63 AVCKELRAQNISTYIVMLSARDDELDRVSGLDFGADDYMTKPFSSREVVSKIKAIIRRKE 122 Query: 120 ----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + N I++ + + V G+V +E +LE+L+ ++G+ +++ + Sbjct: 123 VLSSEKNKNYLGYRSIKLDNSRFEVLVNGQVIDFTLKEYELLEFLIQHKGQAMSRDVLLD 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G F+ + +V+ HI K+R+KL++ + + R +GY ++ Sbjct: 183 RLWG-FEYDGDTRIVDVHIFKIREKLKDYGIK--IKTIRGIGYMLE 225 >gi|219872086|ref|YP_002476461.1| two component transcriptional regulator/response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Haemophilus parasuis SH0165] gi|219692290|gb|ACL33513.1| two component transcriptional regulator/response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Haemophilus parasuis SH0165] Length = 223 Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 58/224 (25%), Positives = 103/224 (45%), Gaps = 9/224 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D L+ +G G S++ F + SSA D ++ L L Sbjct: 3 ILLIEDDPLIGEGLKLGLSKSGFSVDWFTDGKTGLDALSSAPYDAVVLDLTL--PKMDGL 60 Query: 62 ELPR-IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119 E+ + RA+ VP++ ++ +L + G DD + KP E++AR+ A I RR Sbjct: 61 EVLQSWRRANQDVPVLILTARDTLDERIMGLQRGADDYLCKPFALAEVVARLQALIRRRY 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +N E ++ + R ++ + L RE +LE M N+ + + ++ I +Y Sbjct: 121 GHTNPVIEHSLVKFDPNQRKVFLREQEVTLTTREYNLLELFMHNKDRVLTRSFIEEKLY- 179 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 +D+ V N +E HI LR+KL G + + +GY++ N Sbjct: 180 TWDDEVSSNALEVHIYNLRQKL----GKQFIRTVHGVGYALGKN 219 >gi|182438267|ref|YP_001825986.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|178466783|dbj|BAG21303.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] Length = 225 Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 44/223 (19%), Positives = 87/223 (39%), Gaps = 6/223 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L +D A + + +G +E D+ ++ L G LE Sbjct: 5 LLAEDDASISEPLARALRREGYEVEVRQDGPTALDAGLQGGIDLVVLDLGL--PGMDGLE 62 Query: 63 LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-HREILARVAAIYRRLK 120 + R +RA +P++ ++ T+ D+G DD V KP + A + R Sbjct: 63 VARRLRAGGHTIPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAS 122 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + T +R+ + + E L +E +L L+ + G+ V + Q+ ++ Sbjct: 123 EPVAQPATHGVRIDVESHRAWMGEEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 182 Query: 181 FDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222 + ++ HIS LRKKL + + + R +G+ + Sbjct: 183 TWWS-STKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEK 224 >gi|238854407|ref|ZP_04644749.1| regulatory protein VanR [Lactobacillus jensenii 269-3] gi|260665098|ref|ZP_05865948.1| phosphate regulon transcriptional regulatory protein PhoB [Lactobacillus jensenii SJ-7A-US] gi|282931811|ref|ZP_06337296.1| regulatory protein VanR [Lactobacillus jensenii 208-1] gi|313473003|ref|ZP_07813490.1| DNA-binding response regulator [Lactobacillus jensenii 1153] gi|238833029|gb|EEQ25324.1| regulatory protein VanR [Lactobacillus jensenii 269-3] gi|239528791|gb|EEQ67792.1| DNA-binding response regulator [Lactobacillus jensenii 1153] gi|260561152|gb|EEX27126.1| phosphate regulon transcriptional regulatory protein PhoB [Lactobacillus jensenii SJ-7A-US] gi|281304118|gb|EFA96235.1| regulatory protein VanR [Lactobacillus jensenii 208-1] Length = 228 Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 41/227 (18%), Positives = 93/227 (40%), Gaps = 9/227 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + ++G S + ++ D+ + ++ G + Sbjct: 3 IIVVDDDKEIVELLSIYLKNEGYEPIAAYSGKEALTKIATT-PDIGLMILDIMMPGITGI 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + +R S +P+I +S + +G DD V KP + E++ARV ++ RR + Sbjct: 62 DVIKELRKDSDIPIIVVSAKTGDMDKIQGLITGADDYVVKPFNPLEVMARVRSLLRRSQK 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQG------EVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + + + + V L E IL L ++ + + +IF Sbjct: 122 KVTSDKPDILEIGPLVINKDSHEVKTIAGNVIQLTALEFGILYLLASHPNRVFSADEIFE 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 ++ + V V H+S LR K++ G + + + +GY ++ Sbjct: 182 RVW-QQESVVSAKTVMVHVSHLRDKIQKATDGEEVIQTVWGVGYKVE 227 >gi|223042407|ref|ZP_03612456.1| DNA-binding response regulator [Staphylococcus capitis SK14] gi|222444070|gb|EEE50166.1| DNA-binding response regulator [Staphylococcus capitis SK14] Length = 225 Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 47/220 (21%), Positives = 91/220 (41%), Gaps = 4/220 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + D + ++ F S E ++ ++ G E Sbjct: 6 LVVDDDRKILDYVKSHLINEHFETHAFLSGEEALHFLEKENVAIAIVDIM--MNGINGFE 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L + ++ +P+I ++ +L F SG DD V KP +E+L R+ A+ RR +++ Sbjct: 64 LCKTLKEDYDIPVIMLTARDALSDKERAFLSGTDDYVTKPFEVKELLFRIKAVLRRYQIN 123 Query: 123 NNRAETGPIRVFSDGRDPEV-QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + LP +E ++L L++N + I I+G F Sbjct: 124 AESELKLGNLTLNQPYMEINVDAKTINLPNKEFQLLFLLVSNPKHIFTRNDIIEKIWG-F 182 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D ++ V+ HI +LR+KL + + R GY ++ Sbjct: 183 DYEGDDRTVDVHIKRLRQKLSRLGASISIHTVRGQGYKVN 222 >gi|118443810|ref|YP_877372.1| DNA-binding response regulator [Clostridium novyi NT] gi|118134266|gb|ABK61310.1| DNA-binding response regulator [Clostridium novyi NT] Length = 227 Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 46/230 (20%), Positives = 90/230 (39%), Gaps = 14/230 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L+DD + + + + + L + D+ ++ L Sbjct: 3 ILLVDDEESLLNLVKINLMFENYEVITAECGKTAIELFQTQSPDLVVLDLML--PDIDGF 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118 ++ I+ + P+I +S + L G DD + KP RE++ R+ AI RR Sbjct: 61 QVIHAIQEINNEVPIIVLSAKNQINDRLLGLQLGADDYITKPFDSRELILRIRAISRRIN 120 Query: 119 ------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 K ++ E G I++ D R + + E +L ++ N K + + Sbjct: 121 KAKLLSNKKQSSIIEKGFIKIMKDERRVFIDSKEVIFTHIEFEMLVLMVKNSYKVFTREE 180 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + I+G +D + V+ HI ++RKKL D + + +GY + Sbjct: 181 LLDKIWG-YDFSGNTRAVDIHIKRIRKKLLEH--EDAIKTIYGVGYRFEV 227 >gi|119776642|ref|YP_929382.1| osmolarity response regulator [Shewanella amazonensis SB2B] gi|119769142|gb|ABM01713.1| two component transcriptional regulator, winged helix family [Shewanella amazonensis SB2B] Length = 241 Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 38/229 (16%), Positives = 85/229 (37%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ + G + + E + L + ++ L GE L Sbjct: 8 ILVVDDDMRLRALLERYLVEQGFQVRAAANAEQMDRLLERENFHLLVLDLML--PGEDGL 65 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112 + R +R S +P+I ++ + + G DD + KP + RE + + Sbjct: 66 SICRRLRQTGSPLPIIMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQT 125 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 I G + R+ E L E +L+ L+ + + +++ + Sbjct: 126 QEIPGAPAQQEEEVGFGEFHLNLATREMYRGDESIALTSGEFAVLKVLVTHPREPLSRDK 185 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + + G D + E ++ +S+LR+ + + + + LGY Sbjct: 186 LMNLARGR-DYSALERSIDVQVSRLRRLIEKDPANPRYIQTVWGLGYVF 233 >gi|324006395|gb|EGB75614.1| transcriptional activator protein Irlr [Escherichia coli MS 57-2] Length = 227 Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 37/224 (16%), Positives = 98/224 (43%), Gaps = 6/224 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G ++ ++ L + D+ ++ L Sbjct: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIML--PDVNGW 60 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118 ++ R++R A+ +P++ ++ +++ + + G DD + KP E+LARV Sbjct: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + ++ + + V R G L +E +LE+ + ++G+ + ++ I S ++ Sbjct: 121 TVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + + + N ++ + +LR K+ N + + R +GY ++ Sbjct: 181 DM-NFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223 >gi|239630540|ref|ZP_04673571.1| DNA-binding response regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239526823|gb|EEQ65824.1| DNA-binding response regulator [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 233 Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 47/226 (20%), Positives = 97/226 (42%), Gaps = 5/226 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D A + D F + +S+ L + ++ I + Sbjct: 5 LLLVEDEAALADSLTTEFELENMSVIWAKDGAEALTLFKNNEGKINVIILDWMLPKLDGF 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 + R IR +QVP+I ++ + + G DD + KP E++ARV R+ Sbjct: 65 SVLRKIRQSNQVPIIMLTARDYIGDKVAGLTGGADDYITKPFEMEELVARVEVALRHNRQ 124 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + V +D + + + PL +RE +L L+A++ + ++ + A++ Sbjct: 125 AVSPATIFQVDDLLVDTDNKRVQRGEVIMPLTQREYELLVELVAHQDEACSRDDLLDAVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDWN 223 G D + N+++ +I LR K+ + G + + R +GY + N Sbjct: 185 GT-DFDGQPNILDVYIRNLRHKIDDHSGSKKLIHTVRGVGYMLSAN 229 >gi|152973508|ref|YP_001338559.1| DNA-binding transcriptional activator CusR [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|329999903|ref|ZP_08303567.1| transcriptional activator protein Irlr [Klebsiella sp. MS 92-3] gi|150958300|gb|ABR80329.1| probable transcriptional regulatory protein(silver resistance) [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|328538154|gb|EGF64312.1| transcriptional activator protein Irlr [Klebsiella sp. MS 92-3] Length = 227 Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 39/223 (17%), Positives = 100/223 (44%), Gaps = 6/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G ++ ++ L +A D+ ++ L Sbjct: 4 ILIVEDEIKTGEYLSKGLTEAGFVVDHADNGLTGYHLAMTAEYDLVILDIML--PDVNGW 61 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118 ++ R++R A +P++ ++ +++ + + G DD + KP E+LARV Sbjct: 62 DIIRMLRSAGKGMPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGN 121 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++ ++ + + V R G L +E +LE+ + ++G+ + ++ I S ++ Sbjct: 122 TMITESQLKVADLSVDLVSRKVSRAGNRIVLTSKEFSLLEFFIRHQGEVLPRSLIASQVW 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + + N ++ + +LR K+ N G + + R +GY ++ Sbjct: 182 DM-NFDSDTNAIDVAVKRLRAKIDNDYGTKLIQTVRGVGYMLE 223 >gi|104784065|ref|YP_610563.1| DNA-binding response regulator CreB [Pseudomonas entomophila L48] gi|95113052|emb|CAK17780.1| two-component response regulator CreB [Pseudomonas entomophila L48] Length = 226 Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 53/219 (24%), Positives = 93/219 (42%), Gaps = 5/219 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + D + DG S E + Q D+ ++ L Sbjct: 4 ILIVEDESAIADTLVYALQADGHSTEWVSLGSAAVEQQRLRPADLVILDIGL--PDISGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E R +R S+VP++ +S + + + G DD V KP RE+ ARV AI +R+ Sbjct: 62 ETCRQLRRFSEVPVMFLSARDAEIDRVLGLEIGADDYVVKPFSPREVAARVRAILKRMAP 121 Query: 122 SNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + +G+ L R E R+L+ L+ + ++ Q+ + G+ Sbjct: 122 RPEPVAEVAPFQLDTLAMRIVYRGQPLALTRHEFRLLQCLLEQPRRVFSREQLLDGL-GV 180 Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218 + E ++SHI LR KLR +P+ + R LGY Sbjct: 181 ASDVGYERTIDSHIKSLRAKLRLVASEAEPIQTHRGLGY 219 >gi|328882847|emb|CCA56086.1| putative two-component system response regulator [Streptomyces venezuelae ATCC 10712] Length = 238 Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 44/223 (19%), Positives = 85/223 (38%), Gaps = 6/223 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L +D A + + +G +E D+ ++ L G LE Sbjct: 18 LLAEDDASISEPLARALRREGYEVEVREDGPTALDAGLQGGVDLVVLDLGL--PGMDGLE 75 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-HREILARVAAIYRRLK 120 + R +RA P++ ++ T+ D+G DD V KP + A + R Sbjct: 76 VARRLRAEGHTVPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGSA 135 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 T +R+ + + E L +E +L L+ + G+ V + Q+ ++ Sbjct: 136 EPVAAPATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 195 Query: 181 FDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222 + ++ HIS LRKKL + + + R +G+ + Sbjct: 196 TWWS-STKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEK 237 >gi|312964390|ref|ZP_07778684.1| transcriptional activator protein irlR [Escherichia coli 2362-75] gi|312290867|gb|EFR18743.1| transcriptional activator protein irlR [Escherichia coli 2362-75] Length = 227 Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 37/224 (16%), Positives = 98/224 (43%), Gaps = 6/224 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G ++ ++ L + D+ ++ L Sbjct: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIML--PDVNGW 60 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118 ++ R++R A+ +P++ ++ +++ + + G DD + KP E+LARV Sbjct: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + ++ + + V R G L +E +LE+ + ++G+ + ++ I S ++ Sbjct: 121 AVIIESQFQVSDLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + + + N ++ + +LR K+ N + + R +GY ++ Sbjct: 181 DM-NFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223 >gi|196228091|ref|ZP_03126958.1| two component transcriptional regulator, winged helix family [Chthoniobacter flavus Ellin428] gi|196227494|gb|EDY21997.1| two component transcriptional regulator, winged helix family [Chthoniobacter flavus Ellin428] Length = 226 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 47/223 (21%), Positives = 81/223 (36%), Gaps = 8/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L DD + D A +G + L R D+ ++ Sbjct: 3 ILLADDDPITLDSLRACLEPEGFTALAARHGGEALALWEKHRPDLLCLDIM--MPQVDGY 60 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYR 117 E+ R +R A +QVP++ +S + G DD + KP E + Sbjct: 61 EVCRRVRAADAQVPVLFLSAKSEEIDVVVGLQLGADDFIRKPFGKHELLARIRAALRRVH 120 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + V+ E G L RE ILE L G+ V + + + Sbjct: 121 ARSNGVRSFAMHDLVVYPRELRAERAGATIDLSPREAGILELLHEKTGQVVDRDTLLNRC 180 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219 +G+ D E ++ HI+KLRK++ + +++ R +GY Sbjct: 181 WGM-DYFPESRTLDQHIAKLRKRIEPDPGNPTIIETVRGVGYR 222 >gi|261408286|ref|YP_003244527.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261284749|gb|ACX66720.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] Length = 239 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 45/227 (19%), Positives = 82/227 (36%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + +DD + + + ++ +S + D+ ++ L Sbjct: 6 ILAVDDEIGILKLLEITLRKENFTHIDTVSSGKGALQRVKEKSYDMILLDIML--PDLSG 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH------REILARVAA 114 EL IR H+ P+I IS + L G DD + KP + + + R Sbjct: 64 FELCTEIRKHTNAPIIFISARSTDFDKLTGLGIGGDDYITKPFNPLEVIARIKAILRRQK 123 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 I N + G + + V+G+ +E +L + + Q++ Sbjct: 124 IMENELQQNTAYDYGYLSFHPESATLIVKGQPVDCTAKELELLHFFFKHPNHIFTTAQLY 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 ++G D EE V HISKLRKK+ + + + R +GY Sbjct: 184 ELVWGN-DVFGEEKTVTIHISKLRKKIGDDTRKPAIIVNLRGIGYKF 229 >gi|126650615|ref|ZP_01722838.1| transcriptional activator protein [Bacillus sp. B14905] gi|126592771|gb|EAZ86770.1| transcriptional activator protein [Bacillus sp. B14905] Length = 230 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 48/222 (21%), Positives = 96/222 (43%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D A++ G +++ E L D+ ++ L + Sbjct: 3 LLLVEDEAVLSKILSKGLKKSGYAVDTAFDGEEALELFEINEYDLIILDLNL--PKMDGI 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119 E+ IR S+ ++ +S ++ + D G +D + KP +E+ AR+ + R Sbjct: 61 EVLEQIRVQSEDVKILILSARSAIHDKIAGLDRGANDYLIKPFDFQELDARIRNLLRRTF 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + I + S + V GE+ P+ ++E ILEYLM + K V+ ++ ++ Sbjct: 121 SQKSTIMSLEKITLDSSRKIVLVNGEIIPVTKKEYAILEYLMLQQNKVVSSEELIEHVWD 180 Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + + N ++ HI LRKK+ + + + + R GY I Sbjct: 181 -SEADLFSNSLKFHIHSLRKKIADVLGEKEVIQTVRGQGYMI 221 >gi|25026834|ref|NP_736888.1| sensory transduction protein [Corynebacterium efficiens YS-314] gi|259506103|ref|ZP_05749005.1| phosphate regulon transcriptional regulatory protein PhoB [Corynebacterium efficiens YS-314] gi|23492113|dbj|BAC17088.1| sensory transduction protein [Corynebacterium efficiens YS-314] gi|259166319|gb|EEW50873.1| phosphate regulon transcriptional regulatory protein PhoB [Corynebacterium efficiens YS-314] Length = 240 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 45/225 (20%), Positives = 88/225 (39%), Gaps = 10/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + G ++ DV ++ L LE Sbjct: 16 LIVDDEKPLAQMVETYLLRAGFETVQAHTGIDAVHEARRFSPDVVILDLGL--PELDGLE 73 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +RA S ++ ++ S + + G DD + KP RE++ RV A+ RR +++ Sbjct: 74 VCRQVRAFSDCYILMLTARGSEEDKITGLTMGADDYITKPFGIRELVTRVRAVMRRPRIT 133 Query: 123 NNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 T + V G + E +L L G+ ++ ++ + Sbjct: 134 VTGPGTDAPLIIGDLVIDPSAHTVRVGGGAVDITPTEFDLLLALALRPGRVCSRRELVTE 193 Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++ +E +V+ HI LR+KL + G +D+ R +GY + Sbjct: 194 VWDTT-WVGDERIVDVHIGNLRRKLGTDARGRGLIDTVRGVGYRL 237 >gi|332307159|ref|YP_004435010.1| two component transcriptional regulator, winged helix family [Glaciecola agarilytica 4H-3-7+YE-5] gi|332174488|gb|AEE23742.1| two component transcriptional regulator, winged helix family [Glaciecola agarilytica 4H-3-7+YE-5] Length = 231 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 49/226 (21%), Positives = 90/226 (39%), Gaps = 11/226 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + + +G + + E D ++ L G+ L Sbjct: 8 LVVEDEPKIAQILVDFLSLEGFLTHVVHDGDEAEAAIKQVNPDCVILDLML--PGKDGLS 65 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR---- 118 + + +R S VP+I ++ L G DD V KP RE++ARV A+ RR Sbjct: 66 ICKDVRKFSHVPIIMLTARVDEIDRLMGLGFGADDYVCKPFSPREVVARVQALLRRAALG 125 Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 K + N IR+ ++ + + G + L E R+L+ L+ G ++ + Sbjct: 126 APAEKTAPNILTFKHIRIDTERFECTINGSIIELTPVEFRLLKTLLGKPGTVFSREILMQ 185 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYSI 220 Y V ++SH+ LR K+ P+ S +GY + Sbjct: 186 RCY-EDARIVSNRTIDSHMKNLRNKISLVDDPQPILQSVYGVGYKL 230 >gi|312113933|ref|YP_004011529.1| two component transcriptional regulator, winged helix family [Rhodomicrobium vannielii ATCC 17100] gi|311219062|gb|ADP70430.1| two component transcriptional regulator, winged helix family [Rhodomicrobium vannielii ATCC 17100] Length = 239 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 36/229 (15%), Positives = 74/229 (32%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++D G+ + + D+ ++ GE + Sbjct: 7 ILVVDDHKDIRDLLAKFLVKHGMRVTVAADAAEARRHLKAGAFDLLVLDIM--MPGEDGI 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112 L R IR + P+I ++ + + G DD V KP + RE A+ Sbjct: 65 SLCRDIRDSNSAPIIFLTAVAEDTDRIIGLELGADDYVTKPFNPRELLARIRAVIRRAQS 124 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 R + + V PL E +L + + + Q Sbjct: 125 MPPSRDTPPGERIRFGQFLFDADRRELIDGNQMVTPLSYGEHLLLAAFLHRPNVVLTRDQ 184 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220 + G + +++ +S+LR+K+ + + + GY Sbjct: 185 LLDITRGRAANLFD-RSIDNQVSRLRRKIEEDPKDPKIIQTIWGGGYKF 232 >gi|240145147|ref|ZP_04743748.1| phosphate regulon response regulator PhoB [Roseburia intestinalis L1-82] gi|257202825|gb|EEV01110.1| phosphate regulon response regulator PhoB [Roseburia intestinalis L1-82] Length = 223 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 52/223 (23%), Positives = 97/223 (43%), Gaps = 6/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +++D +++ + G +E F + ++ L G G + Sbjct: 4 IYIVEDDINIREIERYALKNSGYEVEEFEGSASFFKRLEKNIPSLILLDIMLPGEDGLDI 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118 L R +A + VP+I ++ S + D G DD + KP E+++RV A Sbjct: 64 LTRIRADKATADVPVIMVTAKTSELDKVKGLDLGADDYITKPFGVMELISRVKALLRRTS 123 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 +++ I + D V G++ L +E +L+YLM N+G +++ +I ++ Sbjct: 124 RINEDSQLIHEDILMDMDKHAVTVAGQLCELTFKEFELLKYLMLNQGIVLSRDKIMDQVW 183 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 G F+ E V+ HI LR+KL G + + R +GY I+ Sbjct: 184 G-FEYEGESRTVDMHIKTLRQKLGAAGG--CIKTVRNVGYMIE 223 >gi|254255648|ref|ZP_04948964.1| Response regulator [Burkholderia dolosa AUO158] gi|124901385|gb|EAY72135.1| Response regulator [Burkholderia dolosa AUO158] Length = 286 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 49/228 (21%), Positives = 89/228 (39%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A + D D+ + L D ++ L G L Sbjct: 54 ILIVEDDADIADVLSLHLRDERYEVVHTADGAQGLRLLEQGGWDALILDLML--PGVDGL 111 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R RA P+I S S + + G DD + KP E++ARV A+ RR+ Sbjct: 112 EICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVD 171 Query: 121 VSNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + R+ V G L RE +L + + GK ++ + Sbjct: 172 ALARDSRIDAGTLDVAGLSIDPIAREASVDGMRIDLTPREFDLLYFFARHPGKVFSRMDL 231 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 +A++G + E+ V +HI++LR K+ + + + GY + Sbjct: 232 LNAVWG-YQHEGYEHTVNTHINRLRAKIETDPAEPARILTVWGRGYKL 278 >gi|297162476|gb|ADI12188.1| response regulator receiver protein [Streptomyces bingchenggensis BCW-1] Length = 258 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 42/238 (17%), Positives = 87/238 (36%), Gaps = 26/238 (10%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D ++++ L G ++ L R D+ ++ L + Sbjct: 26 LLLVEDDEVIRNTVRMLLERYGFTVSTAGDGLTGLELFRERRPDLLLLDVML--PELDGI 83 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-------- 113 L R +R S P++ +S + ++G DD V KP ++AR+ Sbjct: 84 GLCRRVRELSLAPILMMSARGDALDVVSGLEAGADDYVVKPCESAVLVARIRSLLRRASF 143 Query: 114 -----------AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA 162 + G + + G + G + L E R+L A Sbjct: 144 APVQRGAPGGAECETAEEDEPATLAFGDLTIDPRGMEVRRAGRLLALTPTELRMLLEFAA 203 Query: 163 NRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + G + + + S ++ + VV+ H+ +LR K+ G + +++ R GY + Sbjct: 204 SPGVVLERRTLLSRVWD-HAWHGDTRVVDLHVQRLRAKI----GAERIETVRGFGYKL 256 >gi|254496524|ref|ZP_05109395.1| DNA-binding response regulator [Legionella drancourtii LLAP12] gi|254354263|gb|EET12927.1| DNA-binding response regulator [Legionella drancourtii LLAP12] Length = 222 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 56/223 (25%), Positives = 102/223 (45%), Gaps = 9/223 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L++D L+ D G ++ E S ++ ++ L L Sbjct: 1 MLVEDDELLGDAVKTGLTQFGYIVDWLKDGEAARAALKSESFELIILDLGL--PKLSGLA 58 Query: 63 LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120 L + IR P+I ++ S++ + DSG DD + KP E+ AR+ A + R Sbjct: 59 LLQNIRHDGNSTPVIILTARESVEDRIKGLDSGADDYLVKPFDLNELSARIRALVRRSQG 118 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 +++ + I + V + +PRRE +L+ L+ N G+ +++ Q+ +IYG Sbjct: 119 RADSVLQYKNITLDPAAHSVLVDDVLVNVPRREFALLQKLLENSGQVLSREQLMQSIYG- 177 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 ++E V+ N +E HI LRKKL + + + R +GY + N Sbjct: 178 WEEDVDSNALEVHIHNLRKKL----NANFIRTIRGVGYMAEKN 216 >gi|291302704|ref|YP_003513982.1| winged helix family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290571924|gb|ADD44889.1| two component transcriptional regulator, winged helix family [Stackebrandtia nassauensis DSM 44728] Length = 242 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 50/223 (22%), Positives = 92/223 (41%), Gaps = 9/223 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD A + + +G L R D ++ L L Sbjct: 20 LVVDDEAPLAELLSMAVRYEGWQAYTAGDGTAALKLAREHRPDAVILDIML--PDMDGLS 77 Query: 63 LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + A + P++ ++ +++ + +G DD V KP E+LAR+ + RR Sbjct: 78 VLDRLHADAPETPVLFLTAKDAVEDRVRGLTAGGDDYVTKPFSLEEVLARLRNLLRRSGA 137 Query: 122 SNNRAETGPIRVF----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + D + GE PL E +L YLM N + ++K QI + Sbjct: 138 ARANRASALTVGDLTLNEDTHEVSRAGEDIPLTATEFELLRYLMRNPRRVLSKAQILDRV 197 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + +D + NVVE +IS LR+K+ + + ++R GY + Sbjct: 198 W-NYDFGGQANVVELYISYLRRKI-DAGRPPMIHTRRGAGYIL 238 >gi|191639614|ref|YP_001988780.1| Response regulator [Lactobacillus casei BL23] gi|190713916|emb|CAQ67922.1| Response regulator [Lactobacillus casei BL23] gi|327383726|gb|AEA55202.1| Two component transcriptional regulator, winged helix family [Lactobacillus casei LC2W] gi|327386919|gb|AEA58393.1| Two component transcriptional regulator, winged helix family [Lactobacillus casei BD-II] Length = 233 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 48/226 (21%), Positives = 98/226 (43%), Gaps = 5/226 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D A + D F + +S+ L + ++ I + Sbjct: 5 LLLVEDEAALADSLTTEFELENMSVIWAKDGAEALTLFKNNEGKINVIILDWMLPKLDGF 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 + R IR SQVP+I ++ + + G DD + KP E++ARV R+ Sbjct: 65 SVLRKIRQSSQVPIIMLTARDYIGDKVAGLTGGADDYITKPFEMEELVARVEVALRHNRQ 124 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + V +D + + + PL +RE +L L+A++ + ++ + +A++ Sbjct: 125 AVSPATIFQVDDLLVDTDNKRVQRGEVIMPLTQREYELLVELVAHQDEACSRDDLLAAVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDWN 223 G D + N+++ +I LR K+ + G + + R +GY + N Sbjct: 185 GT-DFDGQPNILDVYIRNLRHKIDDHSGSKKLIHTVRGVGYMLSAN 229 >gi|19553806|ref|NP_601808.1| two-component system, response regulator [Corynebacterium glutamicum ATCC 13032] gi|62391446|ref|YP_226848.1| two component response regulator [Corynebacterium glutamicum ATCC 13032] gi|21325379|dbj|BAC00001.1| Two-component system, response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Corynebacterium glutamicum ATCC 13032] gi|41326787|emb|CAF21269.1| putative two component response regulator [Corynebacterium glutamicum ATCC 13032] Length = 235 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 48/223 (21%), Positives = 89/223 (39%), Gaps = 9/223 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + G ++ N + R D ++ G E Sbjct: 12 LVVDDEPNIVELLTVSLKFQGFAVMTANDGNEALKIAREFRPDAYILDVM--MPGMDGFE 69 Query: 63 LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L +R P++ ++ +++ + G DD V KP E++ R+ I RR Sbjct: 70 LLTKLRGEGLDSPVLYLTAKDAVEHRIHGLTIGADDYVTKPFSLEEVITRLRVILRRGGA 129 Query: 122 SNNRAETGPIRVF----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 T + + GE+ L E +L YLM N ++K +I + Sbjct: 130 VEEDTSTSLQYADLTLNDETHEVTKAGELIDLSPTEFNLLRYLMLNAEVVLSKAKILDNV 189 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + +D + NVVES+IS LR+K+ + + + R +GY + Sbjct: 190 W-HYDFGGDGNVVESYISYLRRKV-DTQDPQLIQTVRGVGYVL 230 >gi|329947323|ref|ZP_08294588.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Actinomyces sp. oral taxon 170 str. F0386] gi|328525481|gb|EGF52527.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Actinomyces sp. oral taxon 170 str. F0386] Length = 249 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 44/230 (19%), Positives = 85/230 (36%), Gaps = 14/230 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++D + G + D+ ++ L Sbjct: 17 LLVVDDEPNIRDLLASSLRFAGFEVSIAGDGNGALKTVEKTSPDLVVLDVML--PDMDGF 74 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI----HHREILARVAAIY 116 + R +R P++ ++ + + G DD V KP I A + + Sbjct: 75 TVARRLRERDVTTPILFLTARDDMADKVQGLTVGGDDYVTKPFGLEEVIARIRAILRRTH 134 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + + D + L E ++L YLM N G+ V+K QI Sbjct: 135 AIENQDDGVVRVADLVLDEDAHEVYRSEVEVDLSPTEFKLLRYLMLNAGRVVSKAQILDH 194 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFD------PVDSKRFLGYSI 220 ++ +D + +VES+IS LR+K+ G D + ++R +GY + Sbjct: 195 VW-EYDWNGDAAIVESYISYLRRKVDQIQGADGQPVTPLIQTRRGVGYML 243 >gi|325568587|ref|ZP_08144880.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC 12755] gi|325157625|gb|EGC69781.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC 12755] Length = 261 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 48/228 (21%), Positives = 89/228 (39%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWL--QSSAREDVSAIEAFLIGKGEK 59 +L++D + + +G + L Q + D+ ++ L Sbjct: 31 ILLVEDEESLASFIQSELTFEGYGTVWAKDGQEALTLFNQQANAFDLILLDWMLPI--YD 88 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 + + R IR S +P++ ++ + D G+DD + KP E+ AR+ I RRL Sbjct: 89 GITVARRIRKESDIPILMMTARNQTADVVTGLDVGLDDYLTKPFEIEELFARIRVIERRL 148 Query: 120 KVSNNRAETGPI-------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + + + +V GE L +E IL LM + Sbjct: 149 QREAKQQKNQQNQLVAGELMMDIAKHLVQVAGETIELTPKEFGILYELMKEPEVVKTRDD 208 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + I+G ++ + NVV+ +I LR KL + + R LGY + Sbjct: 209 LLNEIWG-YEYDGQTNVVDVYIRTLRNKLDVCGKGKMIATVRGLGYVL 255 >gi|300916216|ref|ZP_07132966.1| transcriptional activator protein Irlr [Escherichia coli MS 115-1] gi|300416452|gb|EFJ99762.1| transcriptional activator protein Irlr [Escherichia coli MS 115-1] Length = 227 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 39/223 (17%), Positives = 99/223 (44%), Gaps = 6/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G ++ ++ L +A D+ ++ L Sbjct: 4 ILIVEDEIKTGEYLSKGLTEAGFVVDHADNGLTGYHLAMTAEYDLVILDIML--PDVNGW 61 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118 ++ R++R A +P++ ++ +++ + + G DD + KP E+LARV Sbjct: 62 DIIRMLRSAGKGMPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGN 121 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++ ++ + + V R G L +E +LE+ + + G+ + ++ I S ++ Sbjct: 122 TMITESQLKVADLSVDLVSRKVSRAGNRIVLTSKEFSLLEFFIRHHGEVLPRSLIASQVW 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + + N ++ + +LR K+ N G + + R +GY ++ Sbjct: 182 DM-NFDSDTNAIDVAVKRLRAKIDNDYGTKLIQTVRGVGYMLE 223 >gi|222151313|ref|YP_002560469.1| response regulator ArlR homolog [Macrococcus caseolyticus JCSC5402] gi|222120438|dbj|BAH17773.1| response regulator ArlR homolog [Macrococcus caseolyticus JCSC5402] Length = 223 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 51/222 (22%), Positives = 97/222 (43%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A + + ++ E S D ++ L L Sbjct: 4 ILVVEDEANLARFIELELTHESYAVTVMYDGESGLQEALSTEYDCILLDIML--PKLNGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R + P+I I+ + D G DD + KP E+LAR+ A+ RR K Sbjct: 62 EVCRKLRREKETPVIMITAKGETYDKVIGLDYGADDYIVKPFDIEELLARLRALLRRNKN 121 Query: 122 SNNRAE---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++ G +++ + ++ L + E +L+ L N+ + + ++ +AI+ Sbjct: 122 EDDSEHLLVVGNLQIDKEAFTVLCDHQLIELTKTEFELLKLLAMNKRHVMTREKVLTAIW 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G +D VE NVV+ +I LR KL+ +++ R +GY I Sbjct: 182 G-YDNEVETNVVDVYIRYLRNKLKPFGQDQLIETVRGVGYVI 222 >gi|126651767|ref|ZP_01723969.1| two-component response regulator [Bacillus sp. B14905] gi|126591445|gb|EAZ85552.1| two-component response regulator [Bacillus sp. B14905] Length = 212 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 36/217 (16%), Positives = 87/217 (40%), Gaps = 11/217 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD + F +G ++ + E + R D++ ++ + Sbjct: 3 ILIADDEVDMLKILQNYFQREGFTVFTATNGEEALTVFYQERIDLAILDWM--MPKVDGM 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R ++ ++ ++ ++ + + G DD VNKP + + ++ R ++L Sbjct: 61 MVCREMKRTQKIKVLMLTARDTGEDEFKALADGADDYVNKPFYPKVLIMRA----KKLLQ 116 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + + G L + E +L NR + + + Q+ ++GL Sbjct: 117 IEAIQQLHDVSFDVTSKRVWRAGTEIELTKTEFELLRIFSQNRRQILTRDQLLDLVWGL- 175 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 D + V++HI +LR+K+ + + + R +GY Sbjct: 176 DYMGDPRTVDTHIRRLREKIGE----NIIQTHRGIGY 208 >gi|330973419|gb|EGH73485.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 230 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 45/223 (20%), Positives = 86/223 (38%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD ++ G + S + + D+ ++ L Sbjct: 7 ILVIDDEPQIRKFLRISLASQGYKVLEAASGAEGLTQAALNKPDLLVLDLGL--PDMDGQ 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 ++ R S VP++ +S S + D+G +D V KP +E LARV Sbjct: 65 QVLSEFREWSAVPVLVLSVRASEAQKVQALDAGANDYVTKPFGIQEFLARVRALLRQASG 124 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + E GP+ V R + G L R+E +L L + G+ + + Q+ I+ Sbjct: 125 SDKPESALEFGPLTVDLAYRRVLLDGLEVALTRKEYAVLAQLARHPGRVITQQQLLKDIW 184 Query: 179 GLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220 G + + + + LR+KL + + ++ +GY + Sbjct: 185 GPTHTE-DSHYLRIVVGHLRQKLADDPTAPRFILTEPGIGYRL 226 >gi|330685400|gb|EGG97058.1| heme response regulator HssR [Staphylococcus epidermidis VCU121] Length = 224 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 45/220 (20%), Positives = 96/220 (43%), Gaps = 4/220 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + + + E + + D++ ++ + G E Sbjct: 5 LIVDDDPKILNYVSTHLEREHFHTYTHTNGEEALHFLDNHQVDIAIVDIMMH--GMDGFE 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L +I+ +P+I ++ +L F SG DD + KP +E++ R+ A+ RR + Sbjct: 63 LCHMIKEDYDLPVIMLTARDALSDKERAFISGTDDYLTKPFEVKELIFRIKAVLRRYHIH 122 Query: 123 NNRAETGPIRVFSDGRDPEV-QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + T V G+ LP +E ++L L +N + ++T + I+G + Sbjct: 123 TDEKLTIGNLTLHQAYMEVVVNGKTMTLPNKEFQLLFLLASNEKQIFSRTHLIEKIWG-Y 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D +E ++ HI +LR++L+ + + R GY ++ Sbjct: 182 DYEGDERTIDVHIKRLRQRLQQLDSNVTIKTVRGQGYKVE 221 >gi|227893254|ref|ZP_04011059.1| response regulator [Lactobacillus ultunensis DSM 16047] gi|227864937|gb|EEJ72358.1| response regulator [Lactobacillus ultunensis DSM 16047] Length = 240 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 42/233 (18%), Positives = 84/233 (36%), Gaps = 15/233 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D V + F +G + + + I L + + Sbjct: 5 ILMVEDDTSVAEMMGMFFKKEGWEQDIAVDGVEAVDMFKKNADKYDLITLDLNLPKKDGI 64 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPI------------HHREI 108 ++ + +RA S P+I ++ S + G D+ V KP H R + Sbjct: 65 QVAKEVRAISPTVPIIMLTARGSESDQVLGLGIGADEYVTKPFSPLALIARIKALHRRIM 124 Query: 109 LARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 + A K + + V L +E +L + + Sbjct: 125 MKEEIAPKTEAKQDYDIETNHLKISKNRREVMFDDQPVTDLTPKEFDLLYTMAQKPKQVF 184 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ Q+ ++G ++ EE V++HI KLR+KL K+G + + +GY D Sbjct: 185 SRDQLLELVWG-YEYYGEERTVDAHIKKLRQKLE-KVGAQVIQTVWGVGYKFD 235 >gi|170760407|ref|YP_001785600.1| regulatory protein VanR [Clostridium botulinum A3 str. Loch Maree] gi|169407396|gb|ACA55807.1| regulatory protein VanR [Clostridium botulinum A3 str. Loch Maree] Length = 231 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 48/229 (20%), Positives = 87/229 (37%), Gaps = 13/229 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + +DG + + + + + + ++ G L+ Sbjct: 5 LIVDDEVEIIELMEVYLLNDGYKVFKATNGLDALNIINKEKIHLVILDIM--MPGIDGLQ 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + IR +P+I +S + +G DD + KP E+LARV A RR Sbjct: 63 VCMKIRKEYNIPIIMVSAKGQEMDKIQGLSTGADDYIVKPFSTMELLARVKAQIRRYVYL 122 Query: 123 NNRAETGPIRV---------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 N + + + G L E +IL L +N GK + I Sbjct: 123 NENHKQLDNKDVIEIKGITINKRNHKVHLFGAELKLTPTEYKILLLLASNSGKVFSAEDI 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + I+ N V +HI +LR+KL + V++ +GY I+ Sbjct: 183 YKEIWAEKYFEGN-NTVMAHIWRLREKLEDNPKEPKIVETVWGVGYKIE 230 >gi|83643472|ref|YP_431907.1| response regulator [Hahella chejuensis KCTC 2396] gi|83631515|gb|ABC27482.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Hahella chejuensis KCTC 2396] Length = 226 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 43/222 (19%), Positives = 94/222 (42%), Gaps = 7/222 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++I+D V + G ++ ++ + + ++ D+ ++ L L Sbjct: 4 LVIEDDKDVAAYLSKGLKESGYVVDATDNGKTGLHMATTESYDLLLVDRML--PELDGLS 61 Query: 63 LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118 + R++RA S+ P++ +S + + +G DD + KP E + + ++ Sbjct: 62 VVRMLRAGGSKTPVLVLSALGEVDDRVQGLRAGGDDYLVKPFSFSELLARIEALLRRSQQ 121 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + + + R + G L RE R+LEY M N G+ + +T + ++ Sbjct: 122 QQDVVTTLKVADLEMDLLARTVKRNGLSIDLQPREFRLLEYFMRNPGQVLTRTMLLEKVW 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + NV++ HIS+LR K+ + + R GY + Sbjct: 182 D-YHFDPQTNVIDVHISRLRAKIDKDFETPLLHTIRGAGYVL 222 >gi|78186515|ref|YP_374558.1| two component transcriptional regulator [Chlorobium luteolum DSM 273] gi|78166417|gb|ABB23515.1| two component transcriptional regulator, winged helix family [Chlorobium luteolum DSM 273] Length = 236 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 42/230 (18%), Positives = 91/230 (39%), Gaps = 12/230 (5%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + ++++D + G + + E S ++ ++ L G Sbjct: 5 LILVVEDDRNLAKLVGYNLEKAGYKCQFSENGEDAFEQLSMRSFELILLDIML--PGIDG 62 Query: 61 LELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 ++ R IR H P+I ++ + F+ G+DD V KP RE+ R+ A+ + Sbjct: 63 FDVCRKIRQHQIYKDIPIIMLTAKGEEIDKILGFELGIDDYVVKPFSPRELTLRIRAVLK 122 Query: 118 RLKVSNNRAETGPI----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 R + V + G L E ++L L+ +G+ ++ + Sbjct: 123 RDRRQGGVFRDALRSGGLDVDISRHAVTLDGRELVLTLMEFKLLVALLKRKGQAQSREML 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 S ++ + D + +++H+++LR+KL + + R LGY + + Sbjct: 183 LSDVWDV-DRTINTRTIDTHVTRLREKLGTVGAK--IKTVRGLGYKFEED 229 >gi|325661085|ref|ZP_08149712.1| hypothetical protein HMPREF0490_00445 [Lachnospiraceae bacterium 4_1_37FAA] gi|325472592|gb|EGC75803.1| hypothetical protein HMPREF0490_00445 [Lachnospiraceae bacterium 4_1_37FAA] Length = 233 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 45/230 (19%), Positives = 81/230 (35%), Gaps = 11/230 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D + + + + + + ++ + + Sbjct: 6 ILLIEDDKEISEMLKNYLTVENYEVICAYDGQEACDYFDRTDFSMILLDLMI--PKISGM 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARVAA 114 ++ + IR HS VPLI IS S G DD + KP + + R Sbjct: 64 DVMQHIREHSVVPLIIISAKDSEIDKTLGLSLGADDYITKPFSVVEVLARIKANIRRRNQ 123 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + R G + + G L +E IL+ LM + K K QI+ Sbjct: 124 YDQGSEDIPKRLTAGELVMNLSDYTLTKSGRRVELTAKEYEILKLLMQHPKKVYTKEQIY 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223 + ++ +EN V HIS+LR K+ + + +GY + N Sbjct: 184 ALVW-KDTYLGDENAVNVHISRLRNKIEEDSRNPRYIITVWGIGYKLGEN 232 >gi|257438363|ref|ZP_05614118.1| DNA-binding response regulator SrrA [Faecalibacterium prausnitzii A2-165] gi|257199194|gb|EEU97478.1| DNA-binding response regulator SrrA [Faecalibacterium prausnitzii A2-165] Length = 232 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 43/225 (19%), Positives = 92/225 (40%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D L+ D L G + S L D+ ++ L G Sbjct: 9 LLIIEDDVLLNDMTKRLLTQHGYCVTSAYSGSEALLLIEKGTFDLILLDLML--PGIPGE 66 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116 + +++ +P+IG+S + + ++ +G DD + KP ++E+L R Sbjct: 67 TVLEKMKSTMDIPIIGVSAKTDIDSKVNLIRNGADDYITKPFDNQELLVRTEAVLRRFQK 126 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 ++ + + ++ + +++ L R E IL+ LM++ K K IF + Sbjct: 127 STTPNNSKILRFKDLSLDTEAMEAKIRNTPITLTRYEYLILQLLMSSPSKVFTKNNIFES 186 Query: 177 IYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220 ++ + ++N + HI LRKK + + + LG+ + Sbjct: 187 VWNE-NFVGDDNAINVHIGNLRKKFAKVNPEEKYIQTVWGLGFKM 230 >gi|261415718|ref|YP_003249401.1| two component transcriptional regulator, winged helix family [Fibrobacter succinogenes subsp. succinogenes S85] gi|261372174|gb|ACX74919.1| two component transcriptional regulator, winged helix family [Fibrobacter succinogenes subsp. succinogenes S85] gi|302326913|gb|ADL26114.1| DNA-binding response regulator [Fibrobacter succinogenes subsp. succinogenes S85] Length = 242 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 49/225 (21%), Positives = 92/225 (40%), Gaps = 8/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + +G + L +G ++ E S + + ++ L G Sbjct: 10 ILIIEDEIAIAEGLVDLCELNGYRVKHVVDGESGLAEALSGQYGLVLLDLML--PGMDGF 67 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + IR + P+I +S S ++ G DD + KP +LAR+ A+ RR + Sbjct: 68 TVCDKIREKDKSLPIIILSAKNSDDDIINGLKFGADDYIPKPFSVPMLLARIEAVLRRSR 127 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFP---LPRRERRILEYLMANRGKRVAKTQIFSAI 177 + R+E ILEYL NR + ++++ + Sbjct: 128 QTMENEGKLVAGNLRVNFREYTGVRGTEELAFTRKEIEILEYLWNNRDHAIPRSELLRKV 187 Query: 178 YGLFD-EAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 +G + E+V+ V+ HI+KLRKK+ + + + R GY + Sbjct: 188 WGYENAESVDTRTVDIHITKLRKKIEDDPAHPKLLVTFRGEGYQM 232 >gi|217966935|ref|YP_002352441.1| two component transcriptional regulator, winged helix family [Dictyoglomus turgidum DSM 6724] gi|217336034|gb|ACK41827.1| two component transcriptional regulator, winged helix family [Dictyoglomus turgidum DSM 6724] Length = 224 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 54/221 (24%), Positives = 103/221 (46%), Gaps = 3/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + +G ++ E +++ + E + ++ + Sbjct: 3 ILIIEDEKKLGTALKKGLEKEGYVVDLAFDGEEAKYIIENNFEGYDLVILDIMLPKIDGI 62 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L + +RA + P++ ++ ++ + +SG DD + KP + E+LAR+ A+ RR K Sbjct: 63 SLCKDLRAKNFQAPILMLTAKDKVEDKILGLESGADDYLVKPFSYEELLARIRALLRRPK 122 Query: 121 V-SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + I + + + L +E ILEYLM N + ++K QI S ++G Sbjct: 123 NLMPTVLKVKDISLDTVSKRVFRGDIEILLTNKEFAILEYLMRNVNRIISKEQIISHVWG 182 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ NVVE+HI LRKKL K + +++ R +GY I Sbjct: 183 -YESDTLSNVVEAHIKNLRKKLERKRDENIIETIRGMGYRI 222 >gi|194364248|ref|YP_002026858.1| winged helix family two component transcriptional regulator [Stenotrophomonas maltophilia R551-3] gi|194347052|gb|ACF50175.1| two component transcriptional regulator, winged helix family [Stenotrophomonas maltophilia R551-3] Length = 239 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 48/228 (21%), Positives = 94/228 (41%), Gaps = 13/228 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSARE-DVSAIEAFLIGKGEKVL 61 ++++D A + D GD+G + S + L D ++ L G L Sbjct: 7 LIVEDDAHIADLLRMHLGDEGYDVAHAASGDGGLRLLEQDGPWDALVLDVML--PGVDGL 64 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVA 113 ++ + RA VP+I IS S + + G DD + KP E++ R Sbjct: 65 QVCQRARAMARYVPIIIISARGSETQRIVGLELGADDYLAKPFSMPELVARVRALLRRAE 124 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 A+ + ++ E G +++ R V G L RE +L + + + A+ ++ Sbjct: 125 AMAQSARIDAGAIELGGLQLDPVARTASVDGNALELTPREFDLLLFFARHPDQVFARMEL 184 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + ++G + E+ V +HI++LR K+ + + + GY + Sbjct: 185 LNQVWG-YQHDGYEHTVNTHINRLRSKIEPDPANPRRLLTVWGRGYKL 231 >gi|182416533|ref|ZP_02947960.1| regulatory protein VanR [Clostridium butyricum 5521] gi|237668894|ref|ZP_04528878.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E BL5262] gi|182379605|gb|EDT77087.1| regulatory protein VanR [Clostridium butyricum 5521] gi|237657242|gb|EEP54798.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E BL5262] Length = 234 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 38/232 (16%), Positives = 91/232 (39%), Gaps = 15/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + DG + G ++ + + + ++ ++ + Sbjct: 6 ILIVEDEKEICDGIEIYLKNQGYTVFKAYNGIEGLEIIEKEKIHLAIVDIM--MPKMDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + +R P+I +S + + G DD V KP + E++ARV + RR Sbjct: 64 TMVMKLREQHDFPVIMLSAKSEEMDKIMGLNIGADDYVTKPFNPMELIARVNSQLRRYAK 123 Query: 122 SNNRAETGPIRV----------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + + +D ++ V G++ + +E IL LM N G+ + Sbjct: 124 YLKVLKNNEKKTNLFVVGGIELNTDTKEVTVDGDIVKMTPKEFNILHLLMKNPGRVFSAE 183 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 +I+ ++ ++A+ + H+ +R+K+ + + +GY I+ Sbjct: 184 EIYERVW--KEDAISTETIMVHVRNIREKIEIDSKNPKYLKVVWGVGYKIEK 233 >gi|67460421|sp|Q99U73|ARLR_STAAN RecName: Full=Response regulator ArlR Length = 214 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 52/219 (23%), Positives = 90/219 (41%), Gaps = 9/219 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + +++ + S D+ ++ L L Sbjct: 4 ILIVEDEQNLARFLELELTHENYNVDTEYDGQDGLDKALSHYYDLIILDLML--PSINGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR P+I I+ + D G DD + KP E+LAR+ AI RR Sbjct: 62 EICRKIRQQQSTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAILRRQPQ 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + I V V G L + E +L L N+ + + QI + ++G + Sbjct: 122 KDI------IDVNGTLLKVTVNGAEIELTKTEYDLLYLLAENKNHVMQREQILNHVWG-Y 174 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + VE NVV+ +I LR KL+ +++ R +GY I Sbjct: 175 NSEVETNVVDVYIRYLRNKLKPYDRDKMIETVRGVGYVI 213 >gi|16331854|ref|NP_442582.1| OmpR subfamily [Synechocystis sp. PCC 6803] gi|1208484|dbj|BAA10652.1| OmpR subfamily [Synechocystis sp. PCC 6803] Length = 241 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 48/228 (21%), Positives = 89/228 (39%), Gaps = 9/228 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++IDD + D G ++ + L + D+ ++ L G V Sbjct: 4 ILIIDDDPAISDLVSINLEMAGYDVQQAVDGIKGQALAVQLQPDLIMLDLMLPKVDGFTV 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R + +P++ ++ +Q + FDSG DD + KP E+LARV A+ RR Sbjct: 64 CQRLRRDERTADIPVLMLTALGQIQDKIQGFDSGADDYLTKPFDVEEMLARVRALLRRTD 123 Query: 121 VSNNRAETGPIRVF------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 A+ I + + G+ L E +L L+ G+ V+ + I Sbjct: 124 RIPQAAKHSEILNQGPLTLVPERFEAIWFGKSIKLTHLEFELLHCLLQRHGQTVSPSDIL 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 ++G ++ + + HI LR KL + + GY ++ Sbjct: 184 REVWG-YEPDDDIETIRVHIRHLRTKLEPNPRRPRFIKTVYGAGYCLE 230 >gi|323705815|ref|ZP_08117387.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium xylanolyticum LX-11] gi|323534811|gb|EGB24590.1| two component transcriptional regulator, winged helix family [Thermoanaerobacterium xylanolyticum LX-11] Length = 224 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 41/223 (18%), Positives = 85/223 (38%), Gaps = 5/223 (2%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + ++DD ++D + +G +++ F + E + D+ ++ G Sbjct: 4 LIYIVDDDKNIRDLMVKYVEKEGYTVKSFENAEAVLDNFEKDKPDMLILDIM--MPGMDG 61 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV--NKPIHHREILARVAAIYRR 118 EL R IR S VP+I +S + + G DD + + + Sbjct: 62 YELCRQIRKKSDVPIIIVSARDEDLDKILGLELGSDDYIAKPFSPRELIARMKSVFRRVK 121 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + N+ I + D R GE E ++++L N K + Q+ ++ Sbjct: 122 MPKRNDEIRIKDIVIVPDERKVIYNGEEIGFTSMEFELIQFLAQNANKAFTREQLLEKVW 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +D E V+ + ++RKKL++ + + GY ++ Sbjct: 182 -KYDSFTETRAVDDMVKRIRKKLQSYGCEFNISTIWGYGYKVE 223 >gi|312138242|ref|YP_004005578.1| two component system response regulator phop [Rhodococcus equi 103S] gi|311887581|emb|CBH46893.1| two component system response regulator PhoP [Rhodococcus equi 103S] Length = 224 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 49/223 (21%), Positives = 92/223 (41%), Gaps = 9/223 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + G +E + + R D ++ G Sbjct: 2 LIVDDEPSLVELLSVSLRFQGFEVETAANGAEGLDKARAFRPDALILDVM--MPGMDGFG 59 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R +RA P++ ++ +++ + G DD V KP E++ R+ I RR Sbjct: 60 MLRRLRADGVDAPVLFLTARDAVEDKVTGLTIGADDYVTKPFSLEEVVTRLRVILRRAGH 119 Query: 122 SNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 S+++ D R+ GE L E +L Y M N G ++K +I + Sbjct: 120 SDDKQSARVTFADLELDDDTREVWKAGEPVSLSPTEFTLLRYFMVNAGTVLSKPRILDHV 179 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + +D E VVES++S LR+K+ + + + R +GY + Sbjct: 180 W-NYDFGGEVGVVESYVSYLRRKI-DTTEPRLIHTLRGVGYVM 220 >gi|298486538|ref|ZP_07004598.1| DNA-binding response regulator KdpE [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298159015|gb|EFI00076.1| DNA-binding response regulator KdpE [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 230 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 42/223 (18%), Positives = 86/223 (38%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD ++ G + + + + D+ ++ L Sbjct: 7 ILVIDDEPQIRKFLRISLVSQGYKVLEAATGAEGLTQAALNKPDLLVLDLGL--PDMDGQ 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 ++ R S VP++ +S S + D+G +D V KP +E LAR+ Sbjct: 65 QVLSEFREWSAVPVLVLSVRASEAQKVQALDAGANDYVTKPFGIQEFLARIRALLRQVSG 124 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + GP+ V R + G L R+E +L L + G+ + + Q+ I+ Sbjct: 125 SDKPESALQFGPLTVDLAYRRVLLDGHEVALTRKEYAVLAQLARHPGRVITQQQLLKDIW 184 Query: 179 GLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220 G + + + + LR+KL + + ++ +GY + Sbjct: 185 GPTHTD-DSHYLRIVVGHLRQKLADDPTAPRFILTEPGIGYRL 226 >gi|16080525|ref|NP_391352.1| two-component response regulator YvcQ [Bacillus subtilis subsp. subtilis str. 168] gi|221311421|ref|ZP_03593268.1| hypothetical protein Bsubs1_18801 [Bacillus subtilis subsp. subtilis str. 168] gi|221315748|ref|ZP_03597553.1| hypothetical protein BsubsN3_18717 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221320663|ref|ZP_03601957.1| hypothetical protein BsubsJ_18680 [Bacillus subtilis subsp. subtilis str. JH642] gi|221324948|ref|ZP_03606242.1| hypothetical protein BsubsS_18836 [Bacillus subtilis subsp. subtilis str. SMY] gi|321313022|ref|YP_004205309.1| two-component response regulator YvcQ [Bacillus subtilis BSn5] gi|81814897|sp|O06978|YVCP_BACSU RecName: Full=Uncharacterized transcriptional regulatory protein yvcP gi|1945655|emb|CAB08062.1| hypothetical protein [Bacillus subtilis] gi|2635985|emb|CAB15477.1| two-component response regulator [YvcQ] [Bacillus subtilis subsp. subtilis str. 168] gi|320019296|gb|ADV94282.1| two-component response regulator (YvcQ) [Bacillus subtilis BSn5] Length = 237 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 44/230 (19%), Positives = 93/230 (40%), Gaps = 11/230 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + G ++ L + + + D+ ++ L Sbjct: 4 ILLVEDDERIASLLGGHLQKYGYEVKIAEQLNDIKLEFAEMKPDLVLLDINL--PFFDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 R IR S P+I IS + ++G DD + KP H ++A++ ++ RR Sbjct: 62 YWCRQIRTISNAPIIFISARTDELNQVMAIENGGDDYITKPFHLEVVMAKIKSVLRRTYG 121 Query: 122 SNNRAETGPIRV--------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + R+ + D + E ++E ++L + K V++ ++ Sbjct: 122 EYSPSLPQESRIVELGGLTIYPDQNEAEWNSVRILFSQKEFQLLSIFVREHKKIVSRDEL 181 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 A++ D V++N + ++++LR+KL N D + + R GY N Sbjct: 182 LEALWDDVDF-VDDNTLTVNVNRLRRKLENAGLTDCISTIRGQGYQFQVN 230 >gi|87119431|ref|ZP_01075328.1| Two component Transcriptional regulator, Winged helix family protein [Marinomonas sp. MED121] gi|86164907|gb|EAQ66175.1| Two component Transcriptional regulator, Winged helix family protein [Marinomonas sp. MED121] Length = 239 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 42/230 (18%), Positives = 89/230 (38%), Gaps = 14/230 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G +E + + ++ L G Sbjct: 9 ILIVEDDERLALLTKEYLQKNGYQVEVEADGSRAITRIIETQPSLVILDLML--PGADGF 66 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA------- 114 + R +R + P++ ++ + + G DD V+KP+ R +LARV + Sbjct: 67 TVCRSVREGYKAPILMLTARSDDVDQILGLEIGADDYVSKPVKPRVLLARVQSLLRRSIM 126 Query: 115 ---IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 GP+ + + R+ V GE L E +L L +N G+ +++ Sbjct: 127 DVGKQTGGNQGEQNLTFGPLVIDNTRREAWVHGEEIELTSAEFDLLWLLASNAGRILSRE 186 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 +IF + G+ + ++ V+ IS++R K+ + + + R GY Sbjct: 187 EIFGELRGI-EYDGQDRSVDVRISRIRSKIGDDPVHPRRIKTIRSKGYLF 235 >gi|310778086|ref|YP_003966419.1| two component transcriptional regulator, winged helix family [Ilyobacter polytropus DSM 2926] gi|309747409|gb|ADO82071.1| two component transcriptional regulator, winged helix family [Ilyobacter polytropus DSM 2926] Length = 233 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 39/227 (17%), Positives = 86/227 (37%), Gaps = 12/227 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L+DD A + + + + ++ E L + D+ ++ L + Sbjct: 7 LLVDDDAAICKVIKRALKLENIEIIYASNGEEAYSLVRTQIFDLVILDVSLG--DTDGFQ 64 Query: 63 LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR------EILARVAAI 115 + + IR + VP+I +S + G DD + KP + R Sbjct: 65 VLKKIRTEGNDVPIIFLSGNQHENDKILALGMGADDYITKPFSIFLLVAKIKAHLRRGDK 124 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + S + GP + ++ + L +E ++++ M N +K QI+ Sbjct: 125 IKEHQTSLKKIIQGPFILNTETFQLFKNEKEVFLSSKEIMLMKFFMENPNIVFSKDQIYE 184 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 ++ + V++N + ++ LRKKL + + +GY + Sbjct: 185 KVWN--NSIVDDNTIMVYMRHLRKKLEDDPKNPKFFQTVWGIGYKFN 229 >gi|255505684|ref|ZP_05347547.3| DNA-binding response regulator DltR [Bryantella formatexigens DSM 14469] gi|255266531|gb|EET59736.1| DNA-binding response regulator DltR [Bryantella formatexigens DSM 14469] Length = 248 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 51/223 (22%), Positives = 96/223 (43%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D +++ A +G + + L S R DV ++ L G Sbjct: 22 ILIIEDELHLQEALAASLKKEGYQTDCASDGISGLELALSDRYDVILLDLML--PGLGGY 79 Query: 62 ELPRIIRAHSQVPLIGISDYPSL-QTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ + +R + I S + + D G DD + KP +E+ AR+ A+ RR Sbjct: 80 QVLKQLRREKTESAVIILSAKSELEDKIAGLDFGADDYLTKPFQMKELFARIRAVTRRHG 139 Query: 121 VSNNRAETGPIRVFSDGRDP---EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + L +E +++EYLM N + +++++I I Sbjct: 140 EVVRDELVFQDLYLNIRTFTLSSSATSHTLTLGSKEFQLMEYLMRNPKQVISRSRITEKI 199 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G +D VE N V+ +IS LRKKL++ + + R +GY++ Sbjct: 200 WG-YDSEVEYNNVDVYISFLRKKLKHTGAHVEIRAVRGIGYTL 241 >gi|254448586|ref|ZP_05062045.1| phosphate regulon transcriptional regulatory protein PhoB [gamma proteobacterium HTCC5015] gi|198261775|gb|EDY86061.1| phosphate regulon transcriptional regulatory protein PhoB [gamma proteobacterium HTCC5015] Length = 236 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 49/221 (22%), Positives = 96/221 (43%), Gaps = 3/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++++D +++ +G S+ E + D+ ++ L G G + Sbjct: 15 ILVVEDEQAIREMIGFALRREGYHFIEAGSVAEAEDAIAEQVPDLMLVDWMLPGTSGVEF 74 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + + VP+I ++ + D+G DD V+KP RE++AR+ A+ RR+ Sbjct: 75 VRHTKRDELTQDVPVIMLTARTEEDDKIVGLDAGADDYVSKPFSPRELIARIRAVLRRIG 134 Query: 121 VSNNR-AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++ + E G + + D L E R+L++ M++ + ++TQ+ ++G Sbjct: 135 SADGQLLEVGGLAMDVDSHRVTYGDSNLDLGPTEYRLLQFFMSHVDRVYSRTQLLDHVWG 194 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 VEE V+ H+ +LRK L V + R GY Sbjct: 195 RSAF-VEERTVDVHVLRLRKALAPYGCDKLVQTVRGAGYRF 234 >gi|154483403|ref|ZP_02025851.1| hypothetical protein EUBVEN_01106 [Eubacterium ventriosum ATCC 27560] gi|149735655|gb|EDM51541.1| hypothetical protein EUBVEN_01106 [Eubacterium ventriosum ATCC 27560] Length = 222 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 45/223 (20%), Positives = 85/223 (38%), Gaps = 6/223 (2%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEK 59 M L++D + +++ I G+ +GF + ++ L G Sbjct: 1 MIYLVEDDSSIRELVIYALNSTGLEAKGFEKPSEFWKAVEEEEPSLVILDVMLPEESGID 60 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV--NKPIHHREILARVAAIYR 117 VL+ R A ++P+I + S ++ +SG DD + + + Sbjct: 61 VLKKIRSNPAIEKLPVIMETAKTSEYDRINGLESGADDYISKPFSMMEMVARVKALIRRS 120 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 K + V +V L +E +L L+ NRG +++ Q+ + I Sbjct: 121 EYKHEEKDYTINNLYVCPIKHLVKVDDREVVLTLKEYEMLCLLLKNRGIVLSREQLLNKI 180 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G + E V+ H+ LR+KL D + + R +GY I Sbjct: 181 WG-YSFDGESRTVDVHVRTLRQKLGTAG--DVIKTIRGVGYKI 220 >gi|148555062|ref|YP_001262644.1| two component transcriptional regulator [Sphingomonas wittichii RW1] gi|148500252|gb|ABQ68506.1| two component transcriptional regulator, winged helix family [Sphingomonas wittichii RW1] Length = 235 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 51/228 (22%), Positives = 93/228 (40%), Gaps = 14/228 (6%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + +++DD ++ +G+ +E + ++ R D+ ++ GE Sbjct: 7 LILVVDDDGDLRTLITDFLRANGLRVESAADGAEMDARIAAERPDLIVLDLM--MPGEDG 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L + R +R +I +S + + G DD + KP + RE+LAR+ A+ RR Sbjct: 65 LSILRRVRKPGGPAVIMLSAMGEDTDRIIGLEVGADDYLPKPCNPRELLARIRAVLRRRG 124 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVF--------PLPRRERRILEYLMANRGKRVAKTQ 172 A TG ++ PL E R+L + + +++ Q Sbjct: 125 EEAAAAATGGAVRRFGPWTLDIVQREVRRLDAPAAPLTDAEFRVLAAFLDRPQRVLSRDQ 184 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + A G+ D V + ++ IS+LRKKL DP+ + R GY Sbjct: 185 LIEAGKGV-DSDVFDRAIDVTISRLRKKLGPD---DPIRTIRNEGYMF 228 >gi|330873035|gb|EGH07184.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 225 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 45/220 (20%), Positives = 85/220 (38%), Gaps = 4/220 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++I+D D + G +++ L + ++ L G Sbjct: 4 LIIEDEEKTADYLRRGLTEQGYTVDVARDGIEGLHLALENDHAIVILDVML--PGLDGFG 61 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLKV 121 + R +RA Q P+I ++ + + G DD + KP E++AR+ A R Sbjct: 62 VLRALRARKQTPVIMLTAREQVDDRIRGLREGADDYLGKPFSFLELVARLQALTRRSGGH 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + + R G L +E +L L +G ++KT I ++ + Sbjct: 122 EPVQITIADLWIDLISRKATRAGARLDLTAKEFSLLSVLARRQGDILSKTSIAEMVWDI- 180 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + NVVE I +LR KL + + R +GY ++ Sbjct: 181 NFDSDTNVVEVAIKRLRAKLDGPHEQKLLHTIRGMGYVLE 220 >gi|255319403|ref|ZP_05360619.1| transcriptional regulator protein [Acinetobacter radioresistens SK82] gi|262380867|ref|ZP_06074018.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter radioresistens SH164] gi|255303539|gb|EET82740.1| transcriptional regulator protein [Acinetobacter radioresistens SK82] gi|262297502|gb|EEY85420.1| phosphate regulon transcriptional regulatory protein PhoB [Acinetobacter radioresistens SH164] Length = 228 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 43/224 (19%), Positives = 91/224 (40%), Gaps = 7/224 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L++D + G + F+ + + + ++ + L Sbjct: 5 MLVEDEVELAGLVRDYLEAGGFEVSVFHDGQEAYDHFLQRKPSLMILDLMV--PRMDGLT 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +R S +P+I ++ + + G DD + KP +E++ARV A+ RRL Sbjct: 63 ICRKVREQSDIPIIMVTARTEEIDRVLGLNMGADDYICKPFSPKELVARVQAVLRRLDRK 122 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 + R+ + Q + L E R+LE + + G+ ++ Q+ I Sbjct: 123 AEPEQNSLFRIDKAQQRIWYQQKSLNLTPTEFRLLELFLEHVGQVYSRAQLLDHI-NPDS 181 Query: 183 EAVEENVVESHISKLRKKLRNKLG----FDPVDSKRFLGYSIDW 222 V + V++SHI LR+K+ + + + + +GY ++ Sbjct: 182 FDVADRVIDSHIKNLRRKITDAANTGNRHEWIQAVYGVGYRFEY 225 >gi|237747933|ref|ZP_04578413.1| response regulator receiver protein [Oxalobacter formigenes OXCC13] gi|229379295|gb|EEO29386.1| response regulator receiver protein [Oxalobacter formigenes OXCC13] Length = 233 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 45/222 (20%), Positives = 93/222 (41%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D + + G S R DV ++ L G ++ Sbjct: 8 ILVVEDEPAIAELIAFSVKSAGWRPVTVFSGNDAWTALQRFRPDVVLLDWMLPDLSGLRL 67 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118 L R R +P+I ++ + + D G DD + KP +E++AR+ A + Sbjct: 68 LTRIREHREMKALPVIMLTAKTLEEDKVAGLDQGADDYITKPFSPKELVARINALLRRKV 127 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + G + + + + G + E ++L++LMAN + +++Q+ ++ Sbjct: 128 PDRAKSLLRAGSVTLDPESCQVNIDGSDVEMGNSEFKLLKFLMANPDRVFSRSQLLDKVW 187 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +EE V+ H+ +LRK L K + V + R +GY + Sbjct: 188 SN-QLDIEERTVDVHVLRLRKAL--KGQENLVRTVRGMGYML 226 >gi|168182887|ref|ZP_02617551.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|182673991|gb|EDT85952.1| DNA-binding response regulator [Clostridium botulinum Bf] Length = 228 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 51/224 (22%), Positives = 98/224 (43%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D V + A +G + + S + ++ L Sbjct: 4 ILIIEDEKRVSEVLKAYLEKEGYKVYCTTKGLEGIEIFKSIDIKLIILDLML--PDISGE 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR---- 117 E+ RIIR S V + ++ +L ++ + G D+ + KP RE+ ARV A++R Sbjct: 62 EVCRIIRQSSDVHIFMLTAKGALNDRIEGLNIGADEYLIKPFSPRELTARVNALFRRLST 121 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 SN + G + + D R +V G+ + E IL L++N+GK +++ Q+ + I Sbjct: 122 YNSTSNLIFDDGRLSIDYDKRVVKVNGKEVSITPNEFDILYTLVSNKGKVLSREQLINKI 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 +G+ D + ++ HI +RKK+ + + +GY Sbjct: 182 FGI-DFEGYDRTIDVHIKNIRKKIEEDTKNPKYIVTVMKVGYKF 224 >gi|330940506|gb|EGH43585.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. pisi str. 1704B] Length = 224 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 38/223 (17%), Positives = 86/223 (38%), Gaps = 5/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G ++ + +L DV ++ L Sbjct: 3 ILVVEDEPKTAEYMHQGLTESGYIVDIAATGLDGLYLAQHQAYDVVILDVNL--PEMDGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119 E+ +R ++ ++ L+ + + G DD + KP E+ R Sbjct: 61 EVLSRLRKTVSTRIMMVTARGRLEEKVKGLEMGADDYLVKPFEFPELLARVRTLMRRSEQ 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++ + G + + + L +E +L LM + G+ ++ TQI S ++ Sbjct: 121 TSTSKVLQVGDLELDQGRHRAFRGSQRIDLTTKEFALLHLLMRHSGEVMSPTQIISLVWD 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + + + NVVE I +LR K+ + + + R +GY ++ Sbjct: 181 M-NFDCDTNVVEVSIRRLRAKIDDPFETKLIHTLRGVGYVLEV 222 >gi|312200460|ref|YP_004020521.1| transcriptional regulator [Frankia sp. EuI1c] gi|311231796|gb|ADP84651.1| two component transcriptional regulator, winged helix family [Frankia sp. EuI1c] Length = 325 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 46/223 (20%), Positives = 96/223 (43%), Gaps = 9/223 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD +++ + +G + + + + D ++ L L Sbjct: 86 LVVDDESVLTELLTMALRYEGWEVAAAGTGTTALRMIDEFQPDAVVLDIML--PDMDGLA 143 Query: 63 LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R +R+ +P++ ++ +++ + +G DD V KP E+ AR+ + RR+ Sbjct: 144 VLRGMRSVRPDIPVLFLTAKDAVEDRVLGLTAGGDDYVTKPFSIEELAARLRGLMRRVHG 203 Query: 122 SNNRAETG----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + + D R+ G L E +L YLM N + ++K QI + Sbjct: 204 TVAARRNVLSVGDLTLDEDSREVYRDGAEIHLTATEFELLRYLMRNPRRVLSKAQILDRV 263 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + +D + NVVE ++S LRKK+ + + + R GY + Sbjct: 264 W-NYDFGGQANVVELYVSYLRKKI-DAGRQPMIHTMRGAGYVL 304 >gi|227502288|ref|ZP_03932337.1| response regulator [Corynebacterium accolens ATCC 49725] gi|227076978|gb|EEI14941.1| response regulator [Corynebacterium accolens ATCC 49725] Length = 268 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 46/224 (20%), Positives = 83/224 (37%), Gaps = 10/224 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + G ++ DV ++ L LE Sbjct: 44 LVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGL--PELDGLE 101 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR S ++ ++ S + G DD + KP RE++ RV A+ RR + S Sbjct: 102 VCRRIRTFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRRPRTS 161 Query: 123 NNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + V L R E +L L G+ + + + + Sbjct: 162 TTPPQVTTPLIVGDLILDPVAHQVRVGETTVELTRTEFELLVALALRPGQVLTRHDLVTE 221 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYS 219 ++ +E +V+ HI LR+KL G +D+ R +GY Sbjct: 222 VWDTT-WVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGYR 264 >gi|225407891|ref|ZP_03761080.1| hypothetical protein CLOSTASPAR_05112 [Clostridium asparagiforme DSM 15981] gi|225042570|gb|EEG52816.1| hypothetical protein CLOSTASPAR_05112 [Clostridium asparagiforme DSM 15981] Length = 260 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 44/224 (19%), Positives = 90/224 (40%), Gaps = 9/224 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V+ + G +G+S E + + S + ++ Sbjct: 28 ILVVDDDPSVRRIICRVLGSEGISTEEADGGVDAVRMAVSNPYSLIILDLM--MDDMDGF 85 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ +R + PL +S + + G DD + KP + A+V A RR Sbjct: 86 QVIHHLRTNGILTPLFVLSGRQAEVDKVLALGIGADDYITKPFSTMVLCAKVKACLRRSS 145 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFP---LPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + A F D + L +E +++Y ++N+ K + K QI+ + Sbjct: 146 LLSGHANELIAGPFRYICDEMRLFKQGEEIFLSGKECLLMKYFLSNQNKILTKDQIYRYV 205 Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + D+ V++N + HI +LR K+ + + + R +GY Sbjct: 206 WN--DDFVDDNTIMVHIRRLRMKIEDSPGHPVYLKNIRGMGYQF 247 >gi|206576950|ref|YP_002240552.1| transcriptional regulatory protein CreB [Klebsiella pneumoniae 342] gi|206566008|gb|ACI07784.1| transcriptional regulatory protein CreB [Klebsiella pneumoniae 342] Length = 229 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 46/224 (20%), Positives = 91/224 (40%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 L++D + D + + +G + F + DV+ ++ L Sbjct: 6 IWLVEDEQSIADTLVYMLQQEGFQVTVFGRGLPALEAAAHQAPDVAILDVGL--PDISGF 63 Query: 62 ELPRI-IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117 EL R + + +P++ ++ L + G DD + KP RE+ ARV + Sbjct: 64 ELCRRLLTRYPALPVLFLTARSDEVDKLLGLEIGADDYIAKPFSPREVCARVRTVLRRLQ 123 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + G + G+ L R E +L+ L+ G+ ++ Q+ + Sbjct: 124 KFAAPSPVVRVGEFVLDEQAASISWFGQPLNLTRYEFLLLKTLLHAPGRVFSRQQLMELV 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + E+++ V++HI LR KLR P+++ R +GYS+ Sbjct: 184 WSDAWESLD-RTVDTHIKTLRAKLRAVNPEVTPINTHRGMGYSL 226 >gi|77460461|ref|YP_349968.1| two component transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77384464|gb|ABA75977.1| two-component system, transcriptional regulatory protein PhoP [Pseudomonas fluorescens Pf0-1] Length = 225 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 56/223 (25%), Positives = 106/223 (47%), Gaps = 5/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D AL++ + G +E + E + D++ I+ L G L Sbjct: 3 LLVVEDEALLRHHLQTRLTESGHVVESVANAEEALYQTGQFNFDLAVIDLGL--PGMSGL 60 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119 +L R +R+ P++ ++ + Q ++ +G DD + KP E+ AR+ A+ R Sbjct: 61 DLIRQLRSGGKTFPILILTARGNWQDKVEGLAAGADDYLVKPFQFEELEARLNALLRRSS 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + GP+ + + + + + L E RILEYLM + + V K ++ +Y Sbjct: 121 GFTQSTIVAGPLLLDLNRKQATLDEQPLALTAYEYRILEYLMRHHQQVVPKDRLMEQLY- 179 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 D+ + NV+E + +LR+KL GF P+D+ R LGY + Sbjct: 180 PDDDERDPNVIEVLVGRLRRKLEGPAGFKPIDTVRGLGYLFNE 222 >gi|54303252|ref|YP_133245.1| putative two-component response regulator [Photobacterium profundum SS9] gi|46916680|emb|CAG23445.1| putative two-component response regulator [Photobacterium profundum SS9] Length = 235 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 38/226 (16%), Positives = 77/226 (34%), Gaps = 11/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++D G G S+ G + L S D+ ++ G+ Sbjct: 6 ILVVDDNFELRDALTEYLGRAGFSVIGAENGVAMWKLLESNTPDLIILDIM--MPGDDGF 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARVAA 114 L + +R S P+I ++ + + G DD + K + IL R + Sbjct: 64 TLCQKLRRTSDTPIIMLTAVTEETDRVAGLEMGADDYITKSFSPRELLARIKTILRRSHS 123 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + + L + +L + +++ I Sbjct: 124 SHSTQLARKVTLGEWQLDTVTRQLTHLPSKTTKQLSGSDLSLLALFITKAESILSRDDIA 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I+G + E ++ IS+LR L +K + + R GY + Sbjct: 184 REIWGR-EADPFERGIDVQISRLRHHLEDK-DRTLILTVRNQGYML 227 >gi|300788479|ref|YP_003768770.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299797993|gb|ADJ48368.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 232 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 44/225 (19%), Positives = 86/225 (38%), Gaps = 12/225 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + A +G +E + +++ D+ ++ L G LE Sbjct: 11 LVVEDDVTIAGSIAARLRAEGFGVEVVHDGPAAVEADTASEPDLVVLDVML--PGFDGLE 68 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYRR 118 + R I+ VP++ ++ L G DD + KP R + A + + R Sbjct: 69 VCRRIQGRRPVPVLMLTARADETDMLVGLGVGADDYLTKPFSMRVLTARVHALLRRVERS 128 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 V+ R G + + D R G L E +L + + ++ S ++ Sbjct: 129 ASVAGTRIVLGDLEIDVDQRRVARAGVAAQLTPIEFDLLVHFARRPRVVQPRERLLSEVW 188 Query: 179 GLFDEAVE--ENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 V+SHI LR+KL G D + + +GY+++ Sbjct: 189 DWDVHGTSAGTRAVDSHIKALRRKL----GADLIRTVHGVGYALE 229 >gi|189095289|ref|YP_001936302.1| Ycf27 [Heterosigma akashiwo] gi|189095355|ref|YP_001936368.1| Ycf27 [Heterosigma akashiwo] gi|4336895|gb|AAD18001.1| putative His-Asp response regulator [Heterosigma akashiwo] gi|5420157|emb|CAB46638.1| transcriptional regulatory gene 1 [Heterosigma akashiwo] gi|157694632|gb|ABV65908.1| transcriptional regulatory protein 1 [Heterosigma akashiwo] gi|157694698|gb|ABV65974.1| transcriptional regulatory protein 1 [Heterosigma akashiwo] gi|157777863|gb|ABV70049.1| transcriptional regulatory protein 1 [Heterosigma akashiwo] gi|157777929|gb|ABV70115.1| transcriptional regulatory protein 1 [Heterosigma akashiwo] Length = 231 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 47/222 (21%), Positives = 88/222 (39%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD+ ++ G + S E L S D+ ++ L G Sbjct: 9 ILVVDDQLYIRKILSKRLKILGYEVLTTQSGEEAIKLCSFFCPDLIILDIMLC--GINGY 66 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-AAIYRRLK 120 E+ IR+ S VP+I IS L L F G +D + KP EI ++ + Sbjct: 67 EVCSKIRSSSDVPIIFISALDKLSNQLKGFRIGGNDFIVKPFSIDEIEEKILLRLKNENN 126 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG- 179 + + + E+F L E ++L+ + + K + + I ++G Sbjct: 127 KEKSTIRIHNFEINLIKKVLIRNSEIFLLTPTETKLLKVFLLEKNKILTRKTIIKRVWGF 186 Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 + ++ VV+ +ISKLR K+ + + + R +GY Sbjct: 187 NYSSHIDIRVVDVYISKLRVKIEDDPTNPQILKTIRGIGYKF 228 >gi|312960633|ref|ZP_07775139.1| two component transcriptional regulator, winged helix family [Pseudomonas fluorescens WH6] gi|311285159|gb|EFQ63734.1| two component transcriptional regulator, winged helix family [Pseudomonas fluorescens WH6] Length = 233 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 40/226 (17%), Positives = 87/226 (38%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D A + + + +G + + + D+ ++ L G L Sbjct: 4 ILLVEDDAALSELIASYLERNGYHVSVLSRGDHVRERARLNPPDLVILDLML--PGLDGL 61 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAI 115 ++ R++R S P++ ++ + + G DD V KP R + Sbjct: 62 QVCRLLRDDSAGLPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLLRRSS 121 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 +V+N++ G + + R + + L E +L L + G+ +++ QI Sbjct: 122 LSEPQVANDQIIMGNLCIDLSERSVSWREQAVELSSGEYNLLVVLARHAGEVLSRDQILQ 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220 + G+ + + V+ ISKLR+K + + + GY Sbjct: 182 RLRGI-EFNGTDRSVDVAISKLRRKFDDHAGEARKIKTVWGKGYLF 226 >gi|307546911|ref|YP_003899390.1| transcriptional regulator [Halomonas elongata DSM 2581] gi|307218935|emb|CBV44205.1| two component transcriptional regulator, winged helix family [Halomonas elongata DSM 2581] Length = 254 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 40/234 (17%), Positives = 85/234 (36%), Gaps = 18/234 (7%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQS----SAREDVSAIEAFLIGKG 57 + ++D + + D+G + + E A D+ ++ L G Sbjct: 16 ILCVEDNPEIGRMLVERLADEGHHCDRVSDGESALIALEGGASVAGYDLVMLDLML--PG 73 Query: 58 EKVLELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------- 107 LE+ R + R S+ P++ ++ +++ + + G DD V KP H Sbjct: 74 LDGLEVCRRLRRQDSRTPVLMVTAKAAIRDVVLGLEIGADDYVTKPFHMSILLARVQALL 133 Query: 108 ILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167 R V G + + SD + G L +E +L + G Sbjct: 134 RRHRHPDAGDDGIVETPPMVHGELVIDSDRHRVTLAGHALQLTAKEFALLALFARHPGHS 193 Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + ++ ++G + ++ V +HI++LR K+ + + + +GY Sbjct: 194 FTRGELLDRVWGE-EFDGYDHTVNTHINRLRNKIETDPARPRFIQTVWGIGYRF 246 >gi|311739315|ref|ZP_07713151.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035] gi|311305613|gb|EFQ81680.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035] Length = 268 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 45/224 (20%), Positives = 82/224 (36%), Gaps = 10/224 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + G ++ DV ++ L LE Sbjct: 44 LVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGL--PELDGLE 101 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR S ++ ++ S + G DD + KP RE++ RV A+ RR + S Sbjct: 102 VCRRIRTFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRRPRTS 161 Query: 123 NNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + V L E +L L G+ + + + + Sbjct: 162 TTPPQVTTPLIVGDLILDPVAHQVRVGETTVELTHTEFELLVALALRPGQVLTRHDLVTE 221 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYS 219 ++ +E +V+ HI LR+KL G +D+ R +GY Sbjct: 222 VWDTT-WVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGYR 264 >gi|115375150|ref|ZP_01462417.1| two-component response regulator [Stigmatella aurantiaca DW4/3-1] gi|310823133|ref|YP_003955491.1| two-component response regulator [Stigmatella aurantiaca DW4/3-1] gi|115367801|gb|EAU66769.1| two-component response regulator [Stigmatella aurantiaca DW4/3-1] gi|309396205|gb|ADO73664.1| Two-component response regulator [Stigmatella aurantiaca DW4/3-1] Length = 240 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 55/224 (24%), Positives = 101/224 (45%), Gaps = 6/224 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D A + + G ++ + + + DV I+ L L Sbjct: 18 ILLIEDDAQTAEYVRRGLTELGQLVDHAQDGQEGLLMATGGHYDVLVIDRML--PKLDGL 75 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L R++R H + P + ++ S+ + +SG DD + KP E+ AR+ ++ RR Sbjct: 76 TLLRMLREAHIRTPTLFLTAMGSIDDRVKGLESGGDDYLVKPFAFSELYARICSLGRRPP 135 Query: 121 VSNNRAETG--PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + + + + R G+ L E R+LEYL+ + G+ V +T + ++ Sbjct: 136 LQDVQTVFTLADLEMDLIKRTVTRSGKTLDLQPTEFRLLEYLLRHAGRAVTRTMLLEHVW 195 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 F + N+VE+HIS+LR KL + + + R +GY ID Sbjct: 196 -NFHFDPKTNIVETHISRLRAKLDRGFTPELIHTVRGVGYKIDV 238 >gi|15895992|ref|NP_349341.1| response regulator [Clostridium acetobutylicum ATCC 824] gi|15025771|gb|AAK80681.1|AE007771_1 Response regulator (CheY-like receiver domain and HTH-type DNA-binding) [Clostridium acetobutylicum ATCC 824] gi|325510145|gb|ADZ21781.1| Response regulator (CheY-like receiver domain and HTH-type DNA-binding) [Clostridium acetobutylicum EA 2018] Length = 225 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 51/227 (22%), Positives = 92/227 (40%), Gaps = 10/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A + + L + + S + D+ ++ L G Sbjct: 4 ILIVEDDAKINEMIQTLLIKNKYMAKAVFSGTEALLVLEKESFDLILLDLML--PGLSGE 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116 ++ I Q+P+I +S L T L G DD + KP ++ E++ R Sbjct: 62 QVLTKINEQFQIPIICVSAKDDLDTKLGMIRDGADDYITKPFNNEELIVRIGAVLRRMNK 121 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 NR + + S+ + E L +E +ILE L++N K K IF + Sbjct: 122 GTSIDKTNRFTFKDLVLDSENHIVTINNEPIELTVKEYKILELLISNPKKVFTKQNIFES 181 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 ++ + ++E VV H+S LR KL K G + + +GY + N Sbjct: 182 VWSE-EYILDERVVTVHVSNLRNKL--KHGDTYIKTVWGIGYKMQDN 225 >gi|85710771|ref|ZP_01041832.1| Response regulator (CheY, wHTH domains) [Idiomarina baltica OS145] gi|85695175|gb|EAQ33112.1| Response regulator (CheY, wHTH domains) [Idiomarina baltica OS145] Length = 241 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 39/229 (17%), Positives = 90/229 (39%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++ + G + + E + L + + ++ L GE L Sbjct: 8 ILVVDDDARLRSLLERYLNEQGFQVRVASDAEQMDRLLTRENYHLLVLDLML--PGEDGL 65 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112 + + +R ++ +P+I ++ + + G DD + KP + RE + R Sbjct: 66 SICKRLRQTNNTIPVIMLTAKGDEVDRIIGLELGADDYLAKPFNPRELLARIRAVLRRRG 125 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + G R+ R+ PL E +L+ L+++ + +++ + Sbjct: 126 VEAPGAPSQDDQEITFGTYRLNLGTREMFDGDTPMPLTSGEFAVLKALVSHPREPLSRDK 185 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + + G D + E ++ +S+LR+ L + + + LGY Sbjct: 186 LMNLARGR-DYSALERSIDVQVSRLRRMLETDPAKPRYIQTVWGLGYVF 233 >gi|67924911|ref|ZP_00518303.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Crocosphaera watsonii WH 8501] gi|67853245|gb|EAM48612.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Crocosphaera watsonii WH 8501] Length = 245 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 42/227 (18%), Positives = 90/227 (39%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V+ F + +E + + D++ ++ L E Sbjct: 21 ILIVDDDPAVRQLISRFFSYNNYEIEAAADAKNARQIFQKFNPDLAILDVNL--PDESGF 78 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV-------AA 114 L + IR + ++ ++ L+ F+ G DD + KP + + ++ Sbjct: 79 NLCKEIRQTGTL-VLMLTCMADTNYVLEGFEQGADDYLTKPFNLEILKTKIAALLKRGIG 137 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 L NN + + + + + + EV PL E +L +L + + ++ + Sbjct: 138 QEFNLNTPNNSVKIKGLTIDPNRCEVSLNDEVLPLTTLEFELLYFLATHPNRVWERSDLI 197 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 SA++ E E V+ HI ++RKK+ + G + + R GY + Sbjct: 198 SAVWDNNHEVGVERKVDVHIGQIRKKIDDIHG-QMIKTIRGKGYLFE 243 >gi|332968048|gb|EGK07135.1| DNA-binding response regulator [Desmospora sp. 8437] Length = 240 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 44/229 (19%), Positives = 89/229 (38%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +L+DD + + L +G ++ + L D+ ++ ++ Sbjct: 6 ILLVDDEEGLLEMIRLLLEREGYSRIDTATKGQQARDLIDQNDYDLIVLD--VMLPDGSG 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH--------HREILARV 112 +L + IR S+VP++ ++ + L F G DD V KP H + Sbjct: 64 FDLCQEIRKTSKVPILFLTSRTADMDILVGFGYGGDDYVTKPFHALELVARIKALLRRHR 123 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + + G +V + +V+G+ RE ++L + + ++ Sbjct: 124 YFQEQLAQQQPEVLDYGDFQVIRSAGELQVKGKPVDCSAREFQLLLFFCDHPHHIFNVSE 183 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++ ++ + EE V HIS+LRKK+ N + + R LGY Sbjct: 184 LYEKVW-KQEAIGEEKTVVMHISRLRKKIEQNPKQPRFLINVRGLGYKF 231 >gi|302187397|ref|ZP_07264070.1| DNA-binding response regulator [Pseudomonas syringae pv. syringae 642] Length = 249 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 47/225 (20%), Positives = 91/225 (40%), Gaps = 9/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD +++ + G + DV ++ L GE L Sbjct: 23 LIVDDDVAIRELLCDYLKRFNIQARGVTDGAQMRLALDEEKFDVVVLDLML--PGEDGLS 80 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R +R+ S +P++ ++ + + G DD + KP RE++AR+ I RR++ Sbjct: 81 LCRWLRSTSDIPILMLTARCEPTDRIIGLELGADDYMAKPFEPRELVARIQTILRRVRDE 140 Query: 123 NNRAETGPIRVFSD-----GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + + G V PL E R+L + + +++ Q+ A Sbjct: 141 RSDQRSTIRFDAWRLNSVLRQLTAADGLVVPLSNAEFRLLRVFLERPHRVLSREQLLDAA 200 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 G EA + ++ +S+LR+KL + + + R GY D Sbjct: 201 RGRSIEAFD-RSIDLLVSRLRQKLGDDPKNPQLIKTVRGEGYLFD 244 >gi|326204574|ref|ZP_08194431.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] gi|325985367|gb|EGD46206.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] Length = 228 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 47/219 (21%), Positives = 90/219 (41%), Gaps = 4/219 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D L+ DG G + S L + ++ ++ L L Sbjct: 4 ILIVEDDKLINDGISIALKKGGHMVLSGFSYNEALCLFLNNSFELILLDINL--PDRSGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120 EL IR S +P+I I+ + Q ++ F G DD + KP + R+ A+ R Sbjct: 62 ELCNEIRKKSDIPIIFITANDTEQDIVNGFVIGCDDYIAKPFSLEVMNRRIHAVLRRTTP 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 N +G I + D + + L E ++L L N G+ + + I ++ Sbjct: 122 EDKNTFRSGEISINYDKMVVSKREVLIKLTATEYKLLALLTQNSGQVLTRDIILQRLWDT 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGY 218 + V+EN V ++ +LR+K+ + + + +GY Sbjct: 182 DEAFVDENAVSVNMRRLRQKIEDDPKNPKYIKTVFGIGY 220 >gi|254423150|ref|ZP_05036868.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] gi|196190639|gb|EDX85603.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] Length = 236 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 51/232 (21%), Positives = 89/232 (38%), Gaps = 17/232 (7%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 + +D + + G +E + + DV ++ G+ L Sbjct: 4 LFAEDEPKIASFVQIGLKEQGFVVEYCDHGDIAYEKAIQNEYDVILLDIM--MPGKDGLF 61 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + +R + P+I ++ L L + G DD + KP E++AR+ A+ RR Sbjct: 62 ILKNLRQVGRNTPVILLTARDELDDRLQGLNLGADDYIAKPFFVEELIARIHAVVRRSAG 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQG-------------EVFPLPRRERRILEYLMANRGKRV 168 T +V L RE +LEYLM + G+ Sbjct: 122 EQPNLVTVGPFKLDRITRTVTCQSEAQSESQSEGTQQVVELTTREFNLLEYLMRSPGRVF 181 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +TQ+ ++G +D NVV+ I +LRKK+ K ++S R +GY Sbjct: 182 TRTQMLEHVWG-YDFNPSTNVVDVCIQRLRKKIDMKGNERWIESVRGVGYRF 232 >gi|116494543|ref|YP_806277.1| DNA-binding response regulator [Lactobacillus casei ATCC 334] gi|191637982|ref|YP_001987148.1| Response regulator [Lactobacillus casei BL23] gi|227535480|ref|ZP_03965529.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239631859|ref|ZP_04674890.1| DNA-binding response regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301066090|ref|YP_003788113.1| OmpR family DNA-binding response regulator [Lactobacillus casei str. Zhang] gi|116104693|gb|ABJ69835.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus casei ATCC 334] gi|190712284|emb|CAQ66290.1| Response regulator [Lactobacillus casei BL23] gi|227186890|gb|EEI66957.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239526324|gb|EEQ65325.1| DNA-binding response regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300438497|gb|ADK18263.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus casei str. Zhang] gi|327382058|gb|AEA53534.1| hypothetical protein LC2W_1200 [Lactobacillus casei LC2W] gi|327385212|gb|AEA56686.1| hypothetical protein LCBD_1189 [Lactobacillus casei BD-II] Length = 242 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 44/236 (18%), Positives = 88/236 (37%), Gaps = 18/236 (7%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D V + F + + E A + I L + Sbjct: 3 LLMIEDNTSVAEMMAMFFQKEKWEVVNAYDGEEGLAKFKEAPDSFDIITLDLNLPKMDGM 62 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118 ++ + IR SQ PLI ++ + + + G DD V KP ++AR+ A++RR Sbjct: 63 QVAKEIRKISQTVPLIMLTARDTESDQVLGLELGADDYVTKPFSPITLIARIKALHRRAE 122 Query: 119 -------------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRG 165 + ++ L +E +L L + Sbjct: 123 VGAEVGAEQTTSEPPDGFDVETDHFKLSTKTREAYLDGKQIEGLTPKEFDLLHTLSKSPK 182 Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + ++ Q+ ++ ++ +E V++HI KLR+K+ K+G + + +GY D Sbjct: 183 QVFSREQLLQLVWD-YEYYGDERTVDAHIKKLRQKVE-KVGPQIIQTVWGVGYKFD 236 >gi|15800284|ref|NP_286296.1| DNA-binding transcriptional activator CusR [Escherichia coli O157:H7 EDL933] gi|15829863|ref|NP_308636.1| DNA-binding transcriptional activator CusR [Escherichia coli O157:H7 str. Sakai] gi|16128554|ref|NP_415103.1| DNA-binding response regulator in two-component regulatory system with CusS [Escherichia coli str. K-12 substr. MG1655] gi|26246549|ref|NP_752588.1| DNA-binding transcriptional activator CusR [Escherichia coli CFT073] gi|74311107|ref|YP_309526.1| DNA-binding transcriptional activator CusR [Shigella sonnei Ss046] gi|89107436|ref|AP_001216.1| DNA-binding response regulator in two-component regulatory system with CusS [Escherichia coli str. K-12 substr. W3110] gi|91209616|ref|YP_539602.1| DNA-binding transcriptional activator CusR [Escherichia coli UTI89] gi|110640801|ref|YP_668529.1| DNA-binding transcriptional activator CusR [Escherichia coli 536] gi|117622794|ref|YP_851707.1| DNA-binding transcriptional activator CusR [Escherichia coli APEC O1] gi|157160063|ref|YP_001457381.1| DNA-binding transcriptional activator CusR [Escherichia coli HS] gi|168747766|ref|ZP_02772788.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7 str. EC4113] gi|168754663|ref|ZP_02779670.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7 str. EC4401] gi|168760288|ref|ZP_02785295.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7 str. EC4501] gi|168770166|ref|ZP_02795173.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7 str. EC4486] gi|168774625|ref|ZP_02799632.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7 str. EC4196] gi|168779053|ref|ZP_02804060.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7 str. EC4076] gi|168786410|ref|ZP_02811417.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7 str. EC869] gi|168798123|ref|ZP_02823130.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7 str. EC508] gi|170021072|ref|YP_001726026.1| DNA-binding transcriptional activator CusR [Escherichia coli ATCC 8739] gi|170080150|ref|YP_001729470.1| DNA-binding response regulator in two-component regulatory system with CusS [Escherichia coli str. K-12 substr. DH10B] gi|170080251|ref|YP_001729571.1| DNA-binding response regulator in two-component regulatory system with CusS [Escherichia coli str. K-12 substr. DH10B] gi|170681461|ref|YP_001742686.1| DNA-binding transcriptional activator CusR [Escherichia coli SMS-3-5] gi|188493381|ref|ZP_03000651.1| transcriptional regulatory protein CusR [Escherichia coli 53638] gi|191172295|ref|ZP_03033837.1| transcriptional regulatory protein CusR [Escherichia coli F11] gi|193063345|ref|ZP_03044435.1| transcriptional regulatory protein CusR [Escherichia coli E22] gi|193069124|ref|ZP_03050082.1| transcriptional regulatory protein CusR [Escherichia coli E110019] gi|194427935|ref|ZP_03060480.1| transcriptional regulatory protein CusR [Escherichia coli B171] gi|194432525|ref|ZP_03064811.1| transcriptional regulatory protein CusR [Shigella dysenteriae 1012] gi|195936116|ref|ZP_03081498.1| DNA-binding transcriptional activator CusR [Escherichia coli O157:H7 str. EC4024] gi|208807343|ref|ZP_03249680.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7 str. EC4206] gi|208816331|ref|ZP_03257510.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7 str. EC4045] gi|208823294|ref|ZP_03263612.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7 str. EC4042] gi|209398379|ref|YP_002269201.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7 str. EC4115] gi|209917826|ref|YP_002291910.1| DNA-binding transcriptional activator CusR [Escherichia coli SE11] gi|215485613|ref|YP_002328044.1| DNA-binding transcriptional activator CusR [Escherichia coli O127:H6 str. E2348/69] gi|217324144|ref|ZP_03440228.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7 str. TW14588] gi|218549855|ref|YP_002383646.1| DNA-binding transcriptional activator CusR [Escherichia fergusonii ATCC 35469] gi|218557511|ref|YP_002390424.1| DNA-binding transcriptional activator CusR [Escherichia coli S88] gi|218688397|ref|YP_002396609.1| DNA-binding transcriptional activator CusR [Escherichia coli ED1a] gi|218694011|ref|YP_002401678.1| DNA-binding transcriptional activator CusR [Escherichia coli 55989] gi|218698943|ref|YP_002406572.1| DNA-binding transcriptional activator CusR [Escherichia coli IAI39] gi|218703903|ref|YP_002411422.1| DNA-binding transcriptional activator CusR [Escherichia coli UMN026] gi|227884451|ref|ZP_04002256.1| transcriptional regulatory protein CusR [Escherichia coli 83972] gi|237707459|ref|ZP_04537940.1| transcriptional regulatory protein CusR [Escherichia sp. 3_2_53FAA] gi|238899848|ref|YP_002925644.1| DNA-binding response regulator in two-component regulatory system with CusS [Escherichia coli BW2952] gi|254791736|ref|YP_003076573.1| DNA-binding transcriptional activator CusR [Escherichia coli O157:H7 str. TW14359] gi|256023816|ref|ZP_05437681.1| DNA-binding transcriptional activator CusR [Escherichia sp. 4_1_40B] gi|260842796|ref|YP_003220574.1| DNA-binding response regulator CusR in two-component regulatory system with CusS [Escherichia coli O103:H2 str. 12009] gi|260853821|ref|YP_003227712.1| DNA-binding response regulator CusR in two-component regulatory system with CusS [Escherichia coli O26:H11 str. 11368] gi|261224036|ref|ZP_05938317.1| DNA-binding response regulator in two-component regulatory system with CusS [Escherichia coli O157:H7 str. FRIK2000] gi|261257730|ref|ZP_05950263.1| DNA-binding response regulator CusR in two-component regulatory system with CusS [Escherichia coli O157:H7 str. FRIK966] gi|291281521|ref|YP_003498339.1| DNA-binding response regulator in two-component regulatory system with CusS [Escherichia coli O55:H7 str. CB9615] gi|293403832|ref|ZP_06647826.1| copper-sensing two-component system response regulator CusR [Escherichia coli FVEC1412] gi|293408693|ref|ZP_06652532.1| copper-sensing two-component system response regulator CusR [Escherichia coli B354] gi|293413867|ref|ZP_06656516.1| two-component system [Escherichia coli B185] gi|298379609|ref|ZP_06989214.1| two-component system [Escherichia coli FVEC1302] gi|300817922|ref|ZP_07098136.1| transcriptional activator protein Irlr [Escherichia coli MS 107-1] gi|300901064|ref|ZP_07119177.1| transcriptional activator protein Irlr [Escherichia coli MS 198-1] gi|300907733|ref|ZP_07125353.1| transcriptional activator protein Irlr [Escherichia coli MS 84-1] gi|300920632|ref|ZP_07137050.1| transcriptional activator protein Irlr [Escherichia coli MS 115-1] gi|300927346|ref|ZP_07143070.1| transcriptional activator protein Irlr [Escherichia coli MS 182-1] gi|300940500|ref|ZP_07155071.1| transcriptional activator protein Irlr [Escherichia coli MS 21-1] gi|300949241|ref|ZP_07163273.1| transcriptional activator protein Irlr [Escherichia coli MS 116-1] gi|300954363|ref|ZP_07166820.1| transcriptional activator protein Irlr [Escherichia coli MS 175-1] gi|300990248|ref|ZP_07179164.1| transcriptional activator protein Irlr [Escherichia coli MS 45-1] gi|300996924|ref|ZP_07181589.1| transcriptional activator protein Irlr [Escherichia coli MS 200-1] gi|301023989|ref|ZP_07187709.1| transcriptional activator protein Irlr [Escherichia coli MS 69-1] gi|301027580|ref|ZP_07190910.1| transcriptional activator protein Irlr [Escherichia coli MS 196-1] gi|301049754|ref|ZP_07196698.1| transcriptional activator protein Irlr [Escherichia coli MS 185-1] gi|301302040|ref|ZP_07208173.1| transcriptional activator protein Irlr [Escherichia coli MS 124-1] gi|301329064|ref|ZP_07222077.1| transcriptional activator protein Irlr [Escherichia coli MS 78-1] gi|301643823|ref|ZP_07243858.1| transcriptional activator protein Irlr [Escherichia coli MS 146-1] gi|306812997|ref|ZP_07447190.1| DNA-binding transcriptional activator CusR [Escherichia coli NC101] gi|307137184|ref|ZP_07496540.1| DNA-binding transcriptional activator CusR [Escherichia coli H736] gi|309798092|ref|ZP_07692466.1| transcriptional activator protein Irlr [Escherichia coli MS 145-7] gi|312970644|ref|ZP_07784825.1| transcriptional activator protein irlR [Escherichia coli 1827-70] gi|331641064|ref|ZP_08342199.1| transcriptional regulatory protein CusR [Escherichia coli H736] gi|331645728|ref|ZP_08346831.1| transcriptional regulatory protein CusR [Escherichia coli M605] gi|331651576|ref|ZP_08352595.1| transcriptional regulatory protein CusR [Escherichia coli M718] gi|331656596|ref|ZP_08357558.1| transcriptional regulatory protein CusR [Escherichia coli TA206] gi|331661932|ref|ZP_08362855.1| transcriptional regulatory protein CusR [Escherichia coli TA143] gi|331672070|ref|ZP_08372866.1| transcriptional regulatory protein CusR [Escherichia coli TA280] gi|331681986|ref|ZP_08382610.1| transcriptional regulatory protein CusR [Escherichia coli H299] gi|82583735|sp|P0AD00|CUSR_ECO57 RecName: Full=Transcriptional regulatory protein CusR gi|82583736|sp|P0ACZ9|CUSR_ECOL6 RecName: Full=Transcriptional regulatory protein CusR gi|82583737|sp|P0ACZ8|CUSR_ECOLI RecName: Full=Transcriptional regulatory protein CusR gi|7804906|gb|AAF70175.1|AF245661_2 CusR [Escherichia coli] gi|12513453|gb|AAG54904.1|AE005236_5 putative 2-component transcriptional regulator [Escherichia coli O157:H7 str. EDL933] gi|26106948|gb|AAN79132.1|AE016757_36 Transcriptional Regulatory protein cusR [Escherichia coli CFT073] gi|1778486|gb|AAB40769.1| CopR homolog [Escherichia coli] gi|1786784|gb|AAC73672.1| DNA-binding response regulator in two-component regulatory system with CusS [Escherichia coli str. K-12 substr. MG1655] gi|4062195|dbj|BAA35205.1| DNA-binding response regulator in two-component regulatory system with CusS [Escherichia coli str. K12 substr. W3110] gi|13360067|dbj|BAB34032.1| putative 2-component transcriptional regulator [Escherichia coli O157:H7 str. Sakai] gi|73854584|gb|AAZ87291.1| putative 2-component transcriptional regulator [Shigella sonnei Ss046] gi|91071190|gb|ABE06071.1| putative 2-component transcriptional regulator [Escherichia coli UTI89] gi|110342393|gb|ABG68630.1| probable two component response regulator transcription regulator protein [Escherichia coli 536] gi|115511918|gb|ABI99992.1| putative 2-component transcriptional regulator [Escherichia coli APEC O1] gi|157065743|gb|ABV04998.1| transcriptional regulatory protein CusR [Escherichia coli HS] gi|169756000|gb|ACA78699.1| two component heavy metal response transcriptional regulator, winged helix family [Escherichia coli ATCC 8739] gi|169887985|gb|ACB01692.1| DNA-binding response regulator in two-component regulatory system with CusS [Escherichia coli str. K-12 substr. DH10B] gi|169888086|gb|ACB01793.1| DNA-binding response regulator in two-component regulatory system with CusS [Escherichia coli str. K-12 substr. DH10B] gi|170519179|gb|ACB17357.1| transcriptional regulatory protein CusR [Escherichia coli SMS-3-5] gi|187769690|gb|EDU33534.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7 str. EC4196] gi|188017686|gb|EDU55808.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7 str. EC4113] gi|188488580|gb|EDU63683.1| transcriptional regulatory protein CusR [Escherichia coli 53638] gi|189003139|gb|EDU72125.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7 str. EC4076] gi|189358078|gb|EDU76497.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7 str. EC4401] gi|189360901|gb|EDU79320.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7 str. EC4486] gi|189369137|gb|EDU87553.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7 str. EC4501] gi|189373725|gb|EDU92141.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7 str. EC869] gi|189379305|gb|EDU97721.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7 str. EC508] gi|190907394|gb|EDV66991.1| transcriptional regulatory protein CusR [Escherichia coli F11] gi|192930929|gb|EDV83533.1| transcriptional regulatory protein CusR [Escherichia coli E22] gi|192957668|gb|EDV88113.1| transcriptional regulatory protein CusR [Escherichia coli E110019] gi|194413910|gb|EDX30187.1| transcriptional regulatory protein CusR [Escherichia coli B171] gi|194419086|gb|EDX35169.1| transcriptional regulatory protein CusR [Shigella dysenteriae 1012] gi|208727144|gb|EDZ76745.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7 str. EC4206] gi|208732979|gb|EDZ81667.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7 str. EC4045] gi|208737487|gb|EDZ85171.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7 str. EC4042] gi|209159779|gb|ACI37212.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7 str. EC4115] gi|209777738|gb|ACI87181.1| putative 2-component transcriptional regulator [Escherichia coli] gi|209777740|gb|ACI87182.1| putative 2-component transcriptional regulator [Escherichia coli] gi|209777742|gb|ACI87183.1| putative 2-component transcriptional regulator [Escherichia coli] gi|209777744|gb|ACI87184.1| putative 2-component transcriptional regulator [Escherichia coli] gi|209777746|gb|ACI87185.1| putative 2-component transcriptional regulator [Escherichia coli] gi|209911085|dbj|BAG76159.1| putative two-component response regulator [Escherichia coli SE11] gi|215263685|emb|CAS08019.1| DNA-binding response regulator CusR in two-component regulatory system with CusS [Escherichia coli O127:H6 str. E2348/69] gi|217320365|gb|EEC28789.1| transcriptional regulatory protein CusR [Escherichia coli O157:H7 str. TW14588] gi|218350743|emb|CAU96435.1| DNA-binding response regulator in two-component regulatory system with CusS [Escherichia coli 55989] gi|218357396|emb|CAQ90035.1| DNA-binding response regulator in two-component regulatory system with CusS [Escherichia fergusonii ATCC 35469] gi|218364280|emb|CAR01951.1| DNA-binding response regulator in two-component regulatory system with CusS [Escherichia coli S88] gi|218368929|emb|CAR16683.1| DNA-binding response regulator in two-component regulatory system with CusS [Escherichia coli IAI39] gi|218425961|emb|CAR06772.1| DNA-binding response regulator in two-component regulatory system with CusS [Escherichia coli ED1a] gi|218431000|emb|CAR11876.1| DNA-binding response regulator in two-component regulatory system with CusS [Escherichia coli UMN026] gi|222032331|emb|CAP75070.1| Transcriptional regulatory protein cusR [Escherichia coli LF82] gi|226898669|gb|EEH84928.1| transcriptional regulatory protein CusR [Escherichia sp. 3_2_53FAA] gi|227838537|gb|EEJ49003.1| transcriptional regulatory protein CusR [Escherichia coli 83972] gi|238860861|gb|ACR62859.1| DNA-binding response regulator in two-component regulatory system with CusS [Escherichia coli BW2952] gi|254591136|gb|ACT70497.1| DNA-binding response regulator in two-component regulatory system with CusS [Escherichia coli O157:H7 str. TW14359] gi|257752470|dbj|BAI23972.1| DNA-binding response regulator CusR in two-component regulatory system with CusS [Escherichia coli O26:H11 str. 11368] gi|257757943|dbj|BAI29440.1| DNA-binding response regulator CusR in two-component regulatory system with CusS [Escherichia coli O103:H2 str. 12009] gi|260450264|gb|ACX40686.1| two component heavy metal response transcriptional regulator, winged helix family [Escherichia coli DH1] gi|281177711|dbj|BAI54041.1| putative two-component response regulator [Escherichia coli SE15] gi|284920369|emb|CBG33430.1| two-component system response regulator [Escherichia coli 042] gi|290761394|gb|ADD55355.1| DNA-binding response regulator in two-component regulatory system with CusS [Escherichia coli O55:H7 str. CB9615] gi|291428418|gb|EFF01443.1| copper-sensing two-component system response regulator CusR [Escherichia coli FVEC1412] gi|291433925|gb|EFF06898.1| two-component system [Escherichia coli B185] gi|291471871|gb|EFF14354.1| copper-sensing two-component system response regulator CusR [Escherichia coli B354] gi|294494152|gb|ADE92908.1| transcriptional regulatory protein cusR [Escherichia coli IHE3034] gi|298279307|gb|EFI20815.1| two-component system [Escherichia coli FVEC1302] gi|299879285|gb|EFI87496.1| transcriptional activator protein Irlr [Escherichia coli MS 196-1] gi|300298486|gb|EFJ54871.1| transcriptional activator protein Irlr [Escherichia coli MS 185-1] gi|300304379|gb|EFJ58899.1| transcriptional activator protein Irlr [Escherichia coli MS 200-1] gi|300318662|gb|EFJ68446.1| transcriptional activator protein Irlr [Escherichia coli MS 175-1] gi|300355477|gb|EFJ71347.1| transcriptional activator protein Irlr [Escherichia coli MS 198-1] gi|300396795|gb|EFJ80333.1| transcriptional activator protein Irlr [Escherichia coli MS 69-1] gi|300400551|gb|EFJ84089.1| transcriptional activator protein Irlr [Escherichia coli MS 84-1] gi|300407136|gb|EFJ90674.1| transcriptional activator protein Irlr [Escherichia coli MS 45-1] gi|300412371|gb|EFJ95681.1| transcriptional activator protein Irlr [Escherichia coli MS 115-1] gi|300416702|gb|EFK00013.1| transcriptional activator protein Irlr [Escherichia coli MS 182-1] gi|300451322|gb|EFK14942.1| transcriptional activator protein Irlr [Escherichia coli MS 116-1] gi|300454700|gb|EFK18193.1| transcriptional activator protein Irlr [Escherichia coli MS 21-1] gi|300529619|gb|EFK50681.1| transcriptional activator protein Irlr [Escherichia coli MS 107-1] gi|300842592|gb|EFK70352.1| transcriptional activator protein Irlr [Escherichia coli MS 124-1] gi|300844580|gb|EFK72340.1| transcriptional activator protein Irlr [Escherichia coli MS 78-1] gi|301077805|gb|EFK92611.1| transcriptional activator protein Irlr [Escherichia coli MS 146-1] gi|305853760|gb|EFM54199.1| DNA-binding transcriptional activator CusR [Escherichia coli NC101] gi|307552442|gb|ADN45217.1| transcriptional regulatory protein CusR [Escherichia coli ABU 83972] gi|307627991|gb|ADN72295.1| DNA-binding transcriptional activator CusR [Escherichia coli UM146] gi|308118333|gb|EFO55595.1| transcriptional activator protein Irlr [Escherichia coli MS 145-7] gi|309700808|emb|CBJ00105.1| two-component system response regulator [Escherichia coli ETEC H10407] gi|310337293|gb|EFQ02431.1| transcriptional activator protein irlR [Escherichia coli 1827-70] gi|312945116|gb|ADR25943.1| DNA-binding transcriptional activator CusR [Escherichia coli O83:H1 str. NRG 857C] gi|315135236|dbj|BAJ42395.1| DNA-binding response regulator in two-component regulatory system with CusS [Escherichia coli DH1] gi|315255136|gb|EFU35104.1| transcriptional activator protein Irlr [Escherichia coli MS 85-1] gi|315287006|gb|EFU46421.1| transcriptional activator protein Irlr [Escherichia coli MS 110-3] gi|315291379|gb|EFU50739.1| transcriptional activator protein Irlr [Escherichia coli MS 153-1] gi|315616518|gb|EFU97135.1| transcriptional activator protein irlR [Escherichia coli 3431] gi|320180105|gb|EFW55046.1| Copper-sensing two-component system response regulator CusR [Shigella boydii ATCC 9905] gi|320192974|gb|EFW67614.1| Copper-sensing two-component system response regulator CusR [Escherichia coli O157:H7 str. EC1212] gi|320194244|gb|EFW68876.1| Copper-sensing two-component system response regulator CusR [Escherichia coli WV_060327] gi|320638018|gb|EFX07782.1| DNA-binding transcriptional activator CusR [Escherichia coli O157:H7 str. G5101] gi|320643424|gb|EFX12594.1| DNA-binding transcriptional activator CusR [Escherichia coli O157:H- str. 493-89] gi|320648759|gb|EFX17386.1| DNA-binding transcriptional activator CusR [Escherichia coli O157:H- str. H 2687] gi|320654345|gb|EFX22392.1| DNA-binding transcriptional activator CusR [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320660133|gb|EFX27660.1| DNA-binding transcriptional activator CusR [Escherichia coli O55:H7 str. USDA 5905] gi|323153719|gb|EFZ39967.1| transcriptional activator protein irlR [Escherichia coli EPECa14] gi|323158749|gb|EFZ44762.1| transcriptional activator protein irlR [Escherichia coli E128010] gi|323164006|gb|EFZ49814.1| transcriptional activator protein irlR [Shigella sonnei 53G] gi|323170689|gb|EFZ56339.1| transcriptional activator protein irlR [Escherichia coli LT-68] gi|323191206|gb|EFZ76470.1| transcriptional activator protein irlR [Escherichia coli RN587/1] gi|323938427|gb|EGB34680.1| heavy metal response regulator [Escherichia coli E1520] gi|323943161|gb|EGB39318.1| heavy metal response regulator [Escherichia coli E482] gi|323952851|gb|EGB48719.1| heavy metal response regulator [Escherichia coli H252] gi|323958328|gb|EGB54034.1| heavy metal response regulator [Escherichia coli H263] gi|323967516|gb|EGB62932.1| heavy metal response regulator [Escherichia coli M863] gi|323972194|gb|EGB67406.1| heavy metal response regulator [Escherichia coli TA007] gi|324010554|gb|EGB79773.1| transcriptional activator protein Irlr [Escherichia coli MS 60-1] gi|324020182|gb|EGB89401.1| transcriptional activator protein Irlr [Escherichia coli MS 117-3] gi|324114702|gb|EGC08670.1| heavy metal response regulator [Escherichia fergusonii B253] gi|324116644|gb|EGC10559.1| heavy metal response regulator [Escherichia coli E1167] gi|325498235|gb|EGC96094.1| DNA-binding transcriptional activator CusR [Escherichia fergusonii ECD227] gi|326341321|gb|EGD65113.1| Copper-sensing two-component system response regulator CusR [Escherichia coli O157:H7 str. 1044] gi|326345902|gb|EGD69641.1| Copper-sensing two-component system response regulator CusR [Escherichia coli O157:H7 str. 1125] gi|327254248|gb|EGE65870.1| transcriptional activator protein irlR [Escherichia coli STEC_7v] gi|330910330|gb|EGH38840.1| copper-sensing two-component system response regulator CusR [Escherichia coli AA86] gi|331037862|gb|EGI10082.1| transcriptional regulatory protein CusR [Escherichia coli H736] gi|331044480|gb|EGI16607.1| transcriptional regulatory protein CusR [Escherichia coli M605] gi|331049854|gb|EGI21912.1| transcriptional regulatory protein CusR [Escherichia coli M718] gi|331054844|gb|EGI26853.1| transcriptional regulatory protein CusR [Escherichia coli TA206] gi|331060354|gb|EGI32318.1| transcriptional regulatory protein CusR [Escherichia coli TA143] gi|331071059|gb|EGI42418.1| transcriptional regulatory protein CusR [Escherichia coli TA280] gi|331080665|gb|EGI51839.1| transcriptional regulatory protein CusR [Escherichia coli H299] gi|332085680|gb|EGI90844.1| transcriptional activator protein irlR [Shigella dysenteriae 155-74] gi|332094233|gb|EGI99284.1| transcriptional activator protein irlR [Shigella boydii 5216-82] gi|332341911|gb|AEE55245.1| transcriptional activator protein IrlR [Escherichia coli UMNK88] gi|333008223|gb|EGK27698.1| transcriptional activator protein irlR [Shigella flexneri VA-6] Length = 227 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 37/224 (16%), Positives = 98/224 (43%), Gaps = 6/224 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G ++ ++ L + D+ ++ L Sbjct: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIML--PDVNGW 60 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118 ++ R++R A+ +P++ ++ +++ + + G DD + KP E+LARV Sbjct: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + ++ + + V R G L +E +LE+ + ++G+ + ++ I S ++ Sbjct: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + + + N ++ + +LR K+ N + + R +GY ++ Sbjct: 181 DM-NFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223 >gi|329667608|gb|AEB93556.1| two-component system response regulator [Lactobacillus johnsonii DPC 6026] Length = 236 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 43/231 (18%), Positives = 94/231 (40%), Gaps = 13/231 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D V + F + ++ + + + L + + Sbjct: 4 ILMVEDDNSVAEMMKMFFSKEQWDVDIAKDGVEAVEMFKADPSSYDIVTLDLNLPKKDGI 63 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ + IRA S +P+I ++ S + G D+ V KP ++AR+ A+YRR Sbjct: 64 EVAKEIRAISISIPIIMLTARDSETDQILGLGIGADEYVTKPFSPLALIARIKALYRRSH 123 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPL----------PRRERRILEYLMANRGKRVAK 170 + + + I+ + ++ + + +E +L + + ++ Sbjct: 124 LEKDMHASNGIKYDVVTKHLKISKDRREVRFDDKVVEGLTPKEFDLLYTMAQKPKQVFSR 183 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ ++G ++ EE V++HI KLR+KL K G V + +GY D Sbjct: 184 DKLLELVWG-YEFFGEERTVDAHIKKLRQKLE-KAGPQVVQTVWGVGYKFD 232 >gi|317126999|ref|YP_004093281.1| two component transcriptional regulator, winged helix family [Bacillus cellulosilyticus DSM 2522] gi|315471947|gb|ADU28550.1| two component transcriptional regulator, winged helix family [Bacillus cellulosilyticus DSM 2522] Length = 236 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 46/227 (20%), Positives = 86/227 (37%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + +G + ++ D+ ++ L Sbjct: 7 ILIVEDDKDIARIVVDHLRKEGFHVTWASTGMEGLEDFKQNSFDLVLVDLML--PEMDGF 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L + IR S VPL+ IS + + D G DD + KP E+ AR+ + RR Sbjct: 65 TLCKTIRLESNVPLLIISAKQEDASKIRGLDLGADDYLTKPFSLIELSARIHSHLRRYDR 124 Query: 122 SNNRAETGPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 ++ E P+ F ++ + G+ L +E +L L N + +KT+++ Sbjct: 125 YLHQHEAQPMIDFLHGLSIDFLKKNVYLNGKPLLLTTKELDLLLLLAKNPCQTFSKTELY 184 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 I+ N V HI LR KL++ + + GY Sbjct: 185 EHIWQQSSLDGN-NTVTVHIKGLRTKLQDNSRTSKFIQTVWGEGYRF 230 >gi|229029585|ref|ZP_04185664.1| hypothetical protein bcere0028_16740 [Bacillus cereus AH1271] gi|228731707|gb|EEL82610.1| hypothetical protein bcere0028_16740 [Bacillus cereus AH1271] Length = 229 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 41/227 (18%), Positives = 86/227 (37%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D A++ + G +++ S E D+ ++ L G Sbjct: 4 ILIIEDEAVIAELEKDYLEVAGYTVDIDYSGEKGLQSVLLKDYDLLILDIML--PGIDGY 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + +R +P++ +S + G DD + KP E++ARV A R Sbjct: 62 EICKQVRLKKDIPILMVSAKQEEIDKIKGLGFGADDYIIKPFSPSEMVARVNAHLARYDR 121 Query: 122 SNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + E + R V G L +E +L + + + +K ++F Sbjct: 122 LTGKREQIKDEIRIRGLLIDKSARRVFVNGTEVMLTGKEFDLLTCMAEHPNQVFSKDRLF 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++G+ D + V H+ +R K+ + +++ +GY Sbjct: 182 ETVWGM-DVIGDAATVAVHVKNIRHKIELDPFDKSYIETIWGVGYRF 227 >gi|254470779|ref|ZP_05084182.1| two-component response regulator [Pseudovibrio sp. JE062] gi|211959921|gb|EEA95118.1| two-component response regulator [Pseudovibrio sp. JE062] Length = 233 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 44/226 (19%), Positives = 87/226 (38%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A +++ + + D+ ++ Sbjct: 4 ILVVDDDAHIREVITFAIEKANYNTIIAENGFEAVACFKQQPVDLIILDIG--MPEMDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR HS+VP++ +S + + G DD V KP RE++AR+ AI +R Sbjct: 62 EVCREIRKHSEVPILFLSARDEEIDRILGLEMGGDDYVTKPFSPRELVARIGAILKRTNG 121 Query: 122 SNNRAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 E P +++ R G+ L E IL+ + ++ +I Sbjct: 122 PKITGEAKPSQLQAGGVQLDPSYRSVAYNGQPVELTSIEFEILKLFLDRPRMTFSRDRII 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 Y + V + ++SHI +R KL + +++ +G+ + Sbjct: 182 DLAY-PPNIHVSDRTIDSHIRNVRSKLTTAGAPNLIETVHAVGFRL 226 >gi|153934205|ref|YP_001384185.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|153934696|ref|YP_001387726.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|226949224|ref|YP_002804315.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] gi|152930249|gb|ABS35749.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|152930610|gb|ABS36109.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|226844186|gb|ACO86852.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] Length = 228 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 47/225 (20%), Positives = 88/225 (39%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + F D G + ++ D+ I ++ Sbjct: 5 ILIVDDEDDIVSFIKDYFEDQGYRVITASNGREAIEYCDK---DIDIILLDIMMPNIDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + IR P+I +S S + G DD + KP +E+ ARV A RR K Sbjct: 62 QVCQKIRDKVSCPIIFLSARQSEVDKIKGLSVGGDDYIVKPFSIKELKARVEAHLRREKR 121 Query: 122 SNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + I + R + E +E I+E L + + +K QI+ + Sbjct: 122 VPLNNRSKIIFGKLTLDLNSRKVHYEEEEILFTAKEFDIVELLALHPEQVFSKEQIYEKV 181 Query: 178 YGLFDEAVEENVVESHISKLRKK-LRNKLGFDPVDSKRFLGYSID 221 +G +D + N V HI K+R K ++ + + + + +GY + Sbjct: 182 WG-YDAEGDANTVAEHIKKIRAKFIKISVSLNHIATVWGVGYRWE 225 >gi|148263402|ref|YP_001230108.1| two component transcriptional regulator [Geobacter uraniireducens Rf4] gi|146396902|gb|ABQ25535.1| two component transcriptional regulator, winged helix family [Geobacter uraniireducens Rf4] Length = 243 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 36/226 (15%), Positives = 78/226 (34%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + G + + + E R D+ ++ L G Sbjct: 8 ILLVEDEIHLARGICFNLELENYRVSHVETGEDALERVRYERFDLIILDVML--PGIDGF 65 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI-----LARVAAI 115 + R IR ++VP++ ++ + + G DD + KP + E + Sbjct: 66 AVCREIRQLDARVPVLMLTARSDERDRIAGLTGGADDYLTKPFNLNEFLLRVGGMLRRSA 125 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + R + G VF + L E ++L G+ + + + Sbjct: 126 WYRPEPVEEGYRFGDNDVFLLSYRAKTPQGEIDLTDLEVKMLSLFFQKEGEAIPRKTLLE 185 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 +++G + E +++ I +LRK + + R +GY Sbjct: 186 SVWG-YSSDAETRTLDNFIVRLRKYFEPDPAKPVYFQTVRGVGYRF 230 >gi|320449542|ref|YP_004201638.1| two-component response regulator [Thermus scotoductus SA-01] gi|320149711|gb|ADW21089.1| two-component response regulator [Thermus scotoductus SA-01] Length = 224 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 34/221 (15%), Positives = 79/221 (35%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEE-WLQSSAREDVSAIEAFLIGKGEKV 60 +L++D V + +G+ + + + D+ ++ L + Sbjct: 4 ILLVEDDPQVGELVKRFLEKEGLLVVWARTGREALKQAWEGTKPDLVVLDRGL--PDLEG 61 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LE+ + +R + + + + + + D + L R Sbjct: 62 LEVLKSLRDLDPLLPVLLLTGKADEDSRVEGLLEGADDYLGKPFSLKELLARIKALLRRS 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 R GP+ + + R + G+ L E +L L G+ + ++ ++G Sbjct: 122 GKEGRRYFGPLELDLEARKAYLDGQPLKLSATEANLLFVLAQTPGRVYTREELLERVWG- 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 + E VV+++I LRKKL++ +++ +GY Sbjct: 181 PEFEGSERVVDAYIRLLRKKLKDDPQAPRFIETVVGMGYRF 221 >gi|315446747|ref|YP_004079626.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. Spyr1] gi|315265050|gb|ADU01792.1| two component transcriptional regulator, winged helix family [Mycobacterium sp. Spyr1] Length = 250 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 49/230 (21%), Positives = 93/230 (40%), Gaps = 15/230 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + + + + + + DV ++ L LE Sbjct: 20 LVVDDELPLAEVVASYLEREQFEVVVAANGVDAIAVARDLDPDVVILDIGL--PSIDGLE 77 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +R S ++ ++ + T+ G DD + KP RE++AR+ A+ RR +V Sbjct: 78 VCRQLRTFSDAYIVMLTARDTEIDTVLGLTVGADDYITKPFSPRELVARIRAMLRRPRVL 137 Query: 123 N-----------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 GP+ + R+ + GE L R E ILE L G +++ Sbjct: 138 QSATATAEIALAPPRRFGPLSINVAAREVSIDGEQILLTRTEFDILEALSGRPGNVLSRR 197 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 Q+ + E++V+ HI LR+KL + + + R +GY + Sbjct: 198 QLLEIVRDGP-WVGNEHLVDVHIGHLRRKLGDDAASPRYIATVRGVGYRM 246 >gi|326792334|ref|YP_004310155.1| transcriptional regulator [Clostridium lentocellum DSM 5427] gi|326543098|gb|ADZ84957.1| two component transcriptional regulator, winged helix family [Clostridium lentocellum DSM 5427] Length = 226 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 53/223 (23%), Positives = 94/223 (42%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D V +G + L S ++ ++ L K Sbjct: 4 ILIIEDNKDVNLLLKETLISEGYEVISAFDGLEGTKLAKSGEFNLILLDIMLPYK--SGD 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IR VP+I +S + T +D G DD + KP E+ ARVA RR Sbjct: 62 EILKEIRTWGDVPVIILSAKDMVGTKIDLLKLGADDYITKPFDLGEVAARVAVQLRRAHK 121 Query: 122 SNNRAETGPIRVFSDGRDPEV---QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 AE + ++ + G+ L +E +LE L+ N K +K I+ A++ Sbjct: 122 QMKEAEVLSYKDLIVEKEDKRVTVNGQEVELTAKEYSMLELLLNNPNKVFSKANIYEAVW 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + ++N V++H+S LR KL+ + +++ LGY + Sbjct: 182 NE-EYLGDDNAVKTHMSNLRSKLKKVNAEAEYIETVWGLGYRL 223 >gi|258507998|ref|YP_003170749.1| two-component response regulator [Lactobacillus rhamnosus GG] gi|257147925|emb|CAR86898.1| Two-component response regulator [Lactobacillus rhamnosus GG] gi|259649325|dbj|BAI41487.1| two-component response regulator [Lactobacillus rhamnosus GG] Length = 243 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 44/237 (18%), Positives = 89/237 (37%), Gaps = 19/237 (8%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D V + F + + E A + I L + Sbjct: 3 LLMIEDNTSVAEMMAMFFQKEKWEVVNAYDGEEGLAKFKEAPDSFDIITLDLNLPKMDGM 62 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ + IR S+ PLI ++ + + + G DD V KP ++AR+ A++RR + Sbjct: 63 QVAKEIRQISETVPLIMLTARDTESDQVLGLELGADDYVTKPFSPITLIARIKALHRRAE 122 Query: 121 VSNNRAE----------------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANR 164 V ++ L +E +L L + Sbjct: 123 VGAEAGAEQAAPETKADGFDVETDHFKLSTKTREAYLNGKQIEGLTPKEFDLLHTLSKSP 182 Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + ++ Q+ ++ ++ +E V++HI KLR+K+ K+G + + +GY D Sbjct: 183 KQVFSREQLLQLVWD-YEYYGDERTVDAHIKKLRQKIE-KVGPQIIQTVWGVGYKFD 237 >gi|118443624|ref|YP_877546.1| transcriptional regulator [Clostridium novyi NT] gi|118134080|gb|ABK61124.1| transcriptional regulatory protein [Clostridium novyi NT] Length = 232 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 48/225 (21%), Positives = 89/225 (39%), Gaps = 10/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD +++ ++G+ + L + ++ ++ Sbjct: 7 LVVDDDKEIREAIKIYLKNEGIKVFEAKDGIDALMLLQEQEIHLILMDIM--MPKMDGIK 64 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 IR +P+I +S + + G DD V KP + E++ARV + RR Sbjct: 65 ATFKIREKKDIPIIMLSAKSEDTDKILGLNIGADDYVTKPFNPLELIARVKSQLRRYVKF 124 Query: 123 NNRAETGP------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 NN I + + + V GE L E +ILE+LM + G+ + QI+ Sbjct: 125 NNYKSNSQELKVGGIILNKNTKSVSVDGEEVRLTPIEYKILEFLMESTGQVFSIEQIYEN 184 Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++ E N V HI ++R+K+ N + +GY I Sbjct: 185 VWNEPCYNAE-NTVPVHIRRIREKIEINPKEPRYLKVVWGIGYKI 228 >gi|186474207|ref|YP_001861549.1| two component transcriptional regulator [Burkholderia phymatum STM815] gi|184196539|gb|ACC74503.1| two component transcriptional regulator, winged helix family [Burkholderia phymatum STM815] Length = 251 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 43/227 (18%), Positives = 86/227 (37%), Gaps = 12/227 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + + D+ + L D ++ L G LE Sbjct: 16 LIVEDDVDIANVLSLHLRDERYEVVHSADGNEGLRLLEQGNWDALILDLML--PGVDGLE 73 Query: 63 LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARVAA 114 + R RA P+I S S + + G DD + KP + +L R A Sbjct: 74 ICRRARAMARYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRADA 133 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + ++ + + R+ V G+ L RE +L + + GK ++ + Sbjct: 134 MAKDARMEAGSLNLAGLFIDPLTREASVNGKRIELTPREFDLLYFFASRPGKVFSRMDLL 193 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 +A++G + E+ V +HI++LR K+ + + + GY Sbjct: 194 NAVWG-YQHEGYEHTVNTHINRLRAKIEDDPAQPARILTVWGRGYKF 239 >gi|15893581|ref|NP_346930.1| response regulator [Clostridium acetobutylicum ATCC 824] gi|15023129|gb|AAK78270.1|AE007542_7 Response regulator (CheY domain, HTH domain) [Clostridium acetobutylicum ATCC 824] gi|325507701|gb|ADZ19337.1| Response regulator (CheY domain, HTH domain) [Clostridium acetobutylicum EA 2018] Length = 235 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 47/228 (20%), Positives = 94/228 (41%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +L+DD + + +G S + + ++ ++ L Sbjct: 9 ILLVDDEESILKLLTTVLKKEGFSNVITSTNGMDGVKKCRENAPEIIILDIML--PDIDG 66 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R IR S VP++ +S + G DD + KP +E+ RV A +R++ Sbjct: 67 FEVFRQIRNFSSVPIMFLSAKSEDTDKIIGLGLGADDYITKPFSPKEVALRVKAHLKRIE 126 Query: 121 V-------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + N +T + + + + L +E +L+YL+ N+ ++K +I Sbjct: 127 MVKKSLTNRENIIKTEHFTIDFEKGEIIKNDKSTILRAKELLLLKYLVENKNIILSKEKI 186 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 +A++ D +N + HI KLR+KL + + + + LGY + Sbjct: 187 VNAVW-EDDYVGYDNTIMVHIRKLRQKLEDDPSNPKYILTVKGLGYKL 233 >gi|54023538|ref|YP_117780.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] gi|54015046|dbj|BAD56416.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] Length = 226 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 41/225 (18%), Positives = 78/225 (34%), Gaps = 8/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + G + + R DV ++ L + Sbjct: 4 ILVVDDEPQILRALRINLTARGYEVVTAADGRSALRAAAQQRPDVIVLDLGL--PDLDGI 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI----LARVAAIYR 117 E+ + P+I +S + D+G DD V KP E A V Sbjct: 62 EVLAGLHGWCSAPVIVLSARSDAADKVAALDTGADDYVTKPFGMEEFLARIRAAVRRAAA 121 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + T V + G L E +LE L+ +RGK V + ++ + I Sbjct: 122 TPDLPEPTVVTDAFVVDLAAKKVTRDGADVHLTPTEWSMLEMLVRHRGKLVGQRELLTEI 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 +G + + + ++++LR KL + + ++ GY + Sbjct: 182 WGPS-YVGQTHYLRVYLTQLRHKLEPDPSRPRYLITEPGRGYRFE 225 >gi|282866274|ref|ZP_06275320.1| two component transcriptional regulator, winged helix family [Streptomyces sp. ACTE] gi|282558860|gb|EFB64416.1| two component transcriptional regulator, winged helix family [Streptomyces sp. ACTE] Length = 225 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 44/223 (19%), Positives = 86/223 (38%), Gaps = 6/223 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L +D A + + +G +E D+ ++ L G LE Sbjct: 5 LLAEDDASISEPLARALRREGYEVEVREDGPTALDAGLQGGVDLVVLDLGL--PGMDGLE 62 Query: 63 LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-HREILARVAAIYRRLK 120 + R +R VP++ ++ T+ D+G DD V KP + A + R Sbjct: 63 VARRLRGEGLAVPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAT 122 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + T +R+ + + E L +E +L L+ + G+ V + Q+ ++ Sbjct: 123 EPAPQPATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 182 Query: 181 FDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222 + ++ HIS LRKKL + + + R +G+ + Sbjct: 183 TWWS-STKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEK 224 >gi|226226840|ref|YP_002760946.1| OmpR family two-component response regulator [Gemmatimonas aurantiaca T-27] gi|226090031|dbj|BAH38476.1| OmpR family two-component response regulator [Gemmatimonas aurantiaca T-27] Length = 245 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 43/232 (18%), Positives = 87/232 (37%), Gaps = 16/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D AL+ G + +G + + L S + ++ L Sbjct: 14 ILVVEDNALLAAGVRSNLEFEGYQVTVAATGREGLRLAKSRAHALIVLDLML--PDIDGF 71 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI-----------L 109 + R +R H + P++ ++ + F G DD V KP E Sbjct: 72 RVLRELREHGVETPVLILTAMGDETDKVRGFRFGADDYVTKPFGLMEFLARVQALLRRSR 131 Query: 110 ARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 A ++N G + + R ++G L RE +L L+ G + Sbjct: 132 TAKPAHDVPTVQADNTRRFGNVAIDLSTRSVTLEGSAVMLRPREYDLLVALVRRDGAIAS 191 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + ++ ++G D V V++H+++LR+KL + + + R GY + Sbjct: 192 REELLREVWGYDDSVV-SRTVDTHMAELRRKLETDPSEPRWLLTVRKTGYRM 242 >gi|169334006|ref|ZP_02861199.1| hypothetical protein ANASTE_00398 [Anaerofustis stercorihominis DSM 17244] gi|169258723|gb|EDS72689.1| hypothetical protein ANASTE_00398 [Anaerofustis stercorihominis DSM 17244] Length = 226 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 45/226 (19%), Positives = 87/226 (38%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + +G N + D+ ++ Sbjct: 4 ILIVDDEPKIAELINKYATFEGYDTVEVNDGMKAIEICKVEDFDIIVMDIM--MPELDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116 R IR P+I +S + F+ G DD V KP +E++ R Sbjct: 62 SAVREIRKTKDTPVIMLSARGEEYDRIHGFEVGADDYVVKPFSPKELMMRVEAILKRTQN 121 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + K N I + R + G+V L +E +L +L+ N+G +++ +I S Sbjct: 122 KSDKEKENIINIDGINIDLAARILRIDGKVVSLTPKEYDLLTFLIENQGIALSREKIIST 181 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 ++G +D ++ +++HI LRK L + + R +GY + Sbjct: 182 VWG-YDYYGDDRTLDTHIKLLRKNLGPYSN--RIVTLRGVGYRFEK 224 >gi|124515849|gb|EAY57358.1| putative two component transcriptional regulator, winged helix family [Leptospirillum rubarum] Length = 231 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 39/226 (17%), Positives = 85/226 (37%), Gaps = 12/226 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D A + F + + + L + D+ ++ L G L Sbjct: 5 ILVIEDEADIVTLLKHYFLQEHFEVTTTGNGLEGLSLARTLHPDLIVLDLML--PGLDGL 62 Query: 62 ELPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAA 114 + R ++ +P++ ++ + + G DD + KP + + I A + Sbjct: 63 SVNRSLKKDPLTAGIPVVILTAKSDETDRIVGLELGADDYIVKPFNPKELLARIKAILRR 122 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + R + + + + L +E +L L+ N G+ + + + Sbjct: 123 TEQEPAQRPERFSAAGVVLDIARHEARAGDTLLDLTAKEFSLLLALVKNSGRVLDRQMLL 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G D + V+ HI +LRKKL + D V + + +GY Sbjct: 183 DLVWGA-DYEGTDRTVDVHIRRLRKKLGDY--QDRVQTVKQIGYKF 225 >gi|154247331|ref|YP_001418289.1| two component transcriptional regulator [Xanthobacter autotrophicus Py2] gi|154161416|gb|ABS68632.1| two component transcriptional regulator, winged helix family [Xanthobacter autotrophicus Py2] Length = 236 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 50/226 (22%), Positives = 94/226 (41%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++ + G + + D+ ++ L G L Sbjct: 7 ILIVDDDAEIRRLAGKFLREHGHKVTTAQDAREMREAMKAGPVDLIILDIML--PGASGL 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 +L R IR S VP+I ++ S + + G DD ++KP + RE+LAR+ A+ RR++ Sbjct: 65 DLCRDIRRTSSVPIIMLTARGSDVDRIVGLELGADDYLSKPFNPRELLARIHAVLRRMRP 124 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPL-------PRRERRILEYLMANRGKRVAKTQIF 174 S A G + F+ + E+ E +L + + + + + Q+ Sbjct: 125 SGGAATGGSLLNFAGWTLDTRRRELTNPAAVVVDLSTGEYDLLLTFLEHPQRVLTRDQLM 184 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 A + ++ +S+LRKKL + G + V + R GY Sbjct: 185 DAAKNRTATGFD-RAIDIQVSRLRKKLESHGGPEMVKTVRGAGYFF 229 >gi|289626997|ref|ZP_06459951.1| KDP operon transcriptional regulatory protein kdpE [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289646795|ref|ZP_06478138.1| KDP operon transcriptional regulatory protein kdpE [Pseudomonas syringae pv. aesculi str. 2250] gi|330867485|gb|EGH02194.1| KDP operon transcriptional regulatory protein kdpE [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 230 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 42/223 (18%), Positives = 87/223 (39%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD ++ G + + + + D+ ++ L Sbjct: 7 ILVIDDEPQIRKFLRISLVSQGYKVLEAATGAEGLTQAALNKPDLLVLDLGL--PDMDGQ 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 ++ R S VP++ +S S + D+G +D V KP +E LAR+ Sbjct: 65 QVLSEFREWSAVPVLVLSVRASEAQKVQALDAGANDYVTKPFGIQEFLARIRALLRQVSG 124 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + GP+ V R + G+ L R+E +L L + G+ + + Q+ I+ Sbjct: 125 SDKPESALQFGPLTVDLAYRRVLLDGQEVALTRKEYAVLAQLARHPGRVITQQQLLKDIW 184 Query: 179 GLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220 G + + + + LR+KL + + ++ +GY + Sbjct: 185 GPTHTD-DSHYLRIVVGHLRQKLADDPTAPRFILTEPGIGYRL 226 >gi|153956437|ref|YP_001397202.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|146349295|gb|EDK35831.1| Transcriptional regulator [Clostridium kluyveri DSM 555] Length = 231 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 43/228 (18%), Positives = 85/228 (37%), Gaps = 10/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD + + + + S + + ++ G Sbjct: 5 ILVIDDDKELCALIRQSVAVESIDADHCYSGADGLAMLQKNDYQLILLDVM--MPGMDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL------ARVAAI 115 + IR S VP++ ++ + + SG DD + KP E++ R Sbjct: 63 QTMEKIRQTSSVPILMLTSKNDSTSKVRGLRSGADDYLTKPFDMDELIARVVSLIRRYTR 122 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + + + D R Q F LP +E +L + N+GK + K QI+ Sbjct: 123 FNTTGDHSQPLTYQGLTIDLDSRSVTTQNGTFELPPKEFDLLLFCAKNQGKILTKQQIYE 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDW 222 ++G + N + + IS+LRKK+ G + + + +GY + Sbjct: 183 EVWGEAYVYDDSN-IMAIISRLRKKIEPDSGAPYYIQTVKGIGYRFNK 229 >gi|148555150|ref|YP_001262732.1| two component transcriptional regulator [Sphingomonas wittichii RW1] gi|148500340|gb|ABQ68594.1| two component transcriptional regulator, winged helix family [Sphingomonas wittichii RW1] Length = 236 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 46/228 (20%), Positives = 91/228 (39%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D ++ ++G + + ++ D+ ++ L G + Sbjct: 6 ILLVEDDPSLRVLTARALQENGYVVRPAATGPEMWIAFNAEPIDLIILDIML--PGTNGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL R +R S VP+I IS S + + G DD + KP RE++ARV A+ RR + Sbjct: 64 ELCRQLRQKSDVPIIFISAKGSETDRVIGLEIGADDYLAKPFGTRELMARVRAVLRRGGM 123 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEV--------FPLPRRERRILEYLMANRGKRVAKTQI 173 ++ DG L E +L + N + +A+ ++ Sbjct: 124 DRQSEQSRRNEARFDGWQVNFPRRELTSPSGAVVDLTGAEFDLLSSFLHNAQRVIARERL 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + ++ +S+LR+KL+ + P+ + R +GY + Sbjct: 184 IELSRTRLG-DASDRSIDVLVSRLRRKLQGEGRDAPITTVRGVGYMFN 230 >gi|315299097|gb|EFU58351.1| transcriptional activator protein Irlr [Escherichia coli MS 16-3] Length = 227 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 37/224 (16%), Positives = 98/224 (43%), Gaps = 6/224 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G ++ ++ L + D+ ++ L Sbjct: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIML--PDVNGW 60 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118 ++ R++R A+ +P++ ++ +++ + + G DD + KP E+LARV Sbjct: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + ++ + + V R G L +E +LE+ + ++G+ + ++ I S ++ Sbjct: 121 AVIIESQFQVADLMVDLVSRKVTRSGMRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + + + N ++ + +LR K+ N + + R +GY ++ Sbjct: 181 DM-NFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223 >gi|229821566|ref|YP_002883092.1| two component transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229567479|gb|ACQ81330.1| two component transcriptional regulator, winged helix family [Beutenbergia cavernae DSM 12333] Length = 233 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 44/222 (19%), Positives = 85/222 (38%), Gaps = 8/222 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + G S D+ ++ L G LE Sbjct: 12 LIVDDDDALVGVLAEYLRAAGFVTSVAGDGLGAVERTRSWEPDLIVLDRML--PGIDGLE 69 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRRL 119 + R +RA P+I ++ + + + G DD V KP RE + V Sbjct: 70 VTRRVRAICDAPIIMLTALGTGDDRIAGLEVGADDYVTKPFSPRELVLRIQSVLRRALGP 129 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + A GP+ + R G+V PL RE +L +LM + + ++ ++ ++G Sbjct: 130 LSAPSDATAGPLDLDGARRRVTRDGDVVPLTTREFDLLAFLMRHPDRAFSREELLEHVWG 189 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPV-DSKRFLGYSI 220 + + V H+ +LR K+ + + + +GY + Sbjct: 190 WT--FGDLSTVTVHVRRLRAKIEDDPTRPRIVQTVWGVGYLL 229 >gi|160942544|ref|ZP_02089792.1| hypothetical protein FAEPRAM212_00020 [Faecalibacterium prausnitzii M21/2] gi|158446160|gb|EDP23163.1| hypothetical protein FAEPRAM212_00020 [Faecalibacterium prausnitzii M21/2] Length = 236 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 43/220 (19%), Positives = 95/220 (43%), Gaps = 6/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + + +G ++ + + D+ + Sbjct: 17 ILIVEDDKELSQLFQKVLEKNGYQVKSASDGAQALEVLVKEYIDLIISDIM--MPVMDGY 74 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-ARVAAIYRRL 119 EL +R A Q+P++ I+ S F SG DD + KP++ E++ A + R Sbjct: 75 ELVSELRSAGYQIPVLMITAKGSFDDMRQGFLSGSDDYMVKPVNVNEMVLRVGALLRRAQ 134 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++ ++ G D E LP++E +L L A+ G+ K Q+ ++G Sbjct: 135 ILNEHKIVIGSTEFDYDAMTVTTDKESLALPKKEFLLLYKLAASPGRIFTKQQLMDEVWG 194 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 ++ + + +E HI ++R++L++ F+ + + R +GY Sbjct: 195 -YETEADPHTIEVHIGRIRERLKDNPDFE-IVTMRGIGYK 232 >gi|158321191|ref|YP_001513698.1| two component transcriptional regulator [Alkaliphilus oremlandii OhILAs] gi|158141390|gb|ABW19702.1| two component transcriptional regulator, winged helix family [Alkaliphilus oremlandii OhILAs] Length = 233 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 46/224 (20%), Positives = 92/224 (41%), Gaps = 9/224 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + + + + D ++ L Sbjct: 8 ILVVDDEEDIVNVIKSYLEKEKYHVFTAYNGNEAIERFHQNSIDFVILDLML--PDLSGE 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IR SQVP++ ++ L + D G DD + KP +E++ARV AI+RRL Sbjct: 66 EICKKIRIESQVPILMLTAKVDLTDRIYGLDIGADDYMIKPFSPKELVARVNAIWRRLGE 125 Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 +A + + +G++ L E +IL L N GK + ++ + Sbjct: 126 DTVKANILSFSNEDLTVDLNKLEVRKKGKLIDLTSTEYKILSLLSKNTGKIFTREELVTK 185 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I G +D + +++HI +R+K+ ++ + + GY Sbjct: 186 ILG-YDYEGYDRTIDTHIKNIRQKIDDEQN-KYIVTVYGTGYKF 227 >gi|292670361|ref|ZP_06603787.1| response regulator [Selenomonas noxia ATCC 43541] gi|292647953|gb|EFF65925.1| response regulator [Selenomonas noxia ATCC 43541] Length = 235 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 39/228 (17%), Positives = 83/228 (36%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + G +++ + + + + + ++ L G Sbjct: 4 ILLVEDDNDIAQLERDYLEASGFAVDISSDGDEGQRRALTGEYSLILLDVML--PGADGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R +R +P++ +S + G DD + KP E+ ARV A R + Sbjct: 62 AICRAVRRELDIPILMVSARLEDVDKIRALGLGADDYIVKPFSPSELAARVKAHITRYER 121 Query: 122 SNNRAETGPI-------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 +T P + V G L RE +L +L + +K ++ Sbjct: 122 LKGGEQTAPSVLRFGSLEIQPQTHRVFVNGHEVRLAVREFELLLFLAEHPQIVFSKETLY 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 ++ L D + V H+++LR+K+ + + + GY + Sbjct: 182 DRVWDL-DAMGSVSTVSVHMNRLREKIEPDPSNPRWLQTVWGAGYRFN 228 >gi|114561278|ref|YP_748791.1| two component transcriptional regulator, winged helix family protein [Shewanella frigidimarina NCIMB 400] gi|114332571|gb|ABI69953.1| two component transcriptional regulator, winged helix family [Shewanella frigidimarina NCIMB 400] Length = 227 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 43/222 (19%), Positives = 94/222 (42%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D A F ++ + L + D+ ++ L L Sbjct: 5 ILLVEDDATTLKYVADGFTAQKYQVDSATDGQEGLTLAKHNQYDLLILDRML--PKLDGL 62 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118 L +R + ++ P++ +S + + +G DD + KP E+L R Sbjct: 63 TLLSALRTSGNKTPVLILSALSHVDERVKGLRAGGDDYMTKPFAFAELLVRAEKLAQRNV 122 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++ + E G +++ R + L +E ++L+YLM + + +++T +F A++ Sbjct: 123 VEPAATEIEVGSLKMELLTRKVTLDDSELMLQPKEFQLLKYLMEHPNQVISRTLLFEAVW 182 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + NV++ HI+KLR+K + +++ R GY + Sbjct: 183 D-YHFDPRTNVIDVHIAKLRRKFEELGHGELIETVRGAGYRL 223 >gi|107027098|ref|YP_624609.1| two component heavy metal response transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116691509|ref|YP_837042.1| two component heavy metal response transcriptional regulator [Burkholderia cenocepacia HI2424] gi|105896472|gb|ABF79636.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia cenocepacia AU 1054] gi|116649509|gb|ABK10149.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia cenocepacia HI2424] Length = 223 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 42/221 (19%), Positives = 94/221 (42%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + +++ + + +L D+ ++ L Sbjct: 3 ILIVEDEPKMASYLRKGLTEASYTVDVTENGQDGLFLALHEDFDLIVLDVMLPA--LDGF 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +RA Q P++ ++ +++ + + G DD + KP + E LAR+ ++ RR Sbjct: 61 EVLRRLRAQKQTPVLLLTAREAIEDKVAGLELGADDYLLKPFAYAEFLARIRSLLRRAPR 120 Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + R L +E +L+ L G+ + +T I S I+ + Sbjct: 121 NVRDILHVADLEIDLLKRRVRRADTRIDLTAQEFALLQLLAEREGEVLTRTFITSQIWDM 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + NVV++ I +LR K+ N + + R +GY ++ Sbjct: 181 -NFDSDTNVVDAAIKRLRAKIDNAYEKKLIHTIRGMGYVLE 220 >gi|164686210|ref|ZP_02210240.1| hypothetical protein CLOBAR_02648 [Clostridium bartlettii DSM 16795] gi|164601812|gb|EDQ95277.1| hypothetical protein CLOBAR_02648 [Clostridium bartlettii DSM 16795] Length = 231 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 44/230 (19%), Positives = 90/230 (39%), Gaps = 12/230 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + ++G + + ++ + ++ + Sbjct: 4 ILVVDDDKEIVESIEIYLRNEGYKVFKAYDGLEALDILTNEEIHLILMDIM--MPKLDGI 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + IR +P+I +S + + G DD + KP + E++ARV + RR Sbjct: 62 KATIKIRQEKNIPIILVSAKGEDTDKILGLNIGADDYITKPFNLLELIARVKSNLRRYMN 121 Query: 122 SNNRAETGPIRV--------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 N V + ++ +V G + E RILE L+ N+G+ + +I Sbjct: 122 FGNFNNETREDVLRSGGLELNTSTKEVKVDGNQVKVTPIEYRILELLLRNKGRVFSIDEI 181 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 + ++ VE N V HI ++R+K+ N + +GY I+ Sbjct: 182 YEKVWKEESFNVE-NTVAVHIRRIREKIEINPKEPRYLKVVWGIGYKIEK 230 >gi|170724520|ref|YP_001758546.1| osmolarity response regulator [Shewanella woodyi ATCC 51908] gi|169809867|gb|ACA84451.1| two component transcriptional regulator, winged helix family [Shewanella woodyi ATCC 51908] Length = 241 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 36/229 (15%), Positives = 87/229 (37%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ + G + + E + L + ++ L GE L Sbjct: 8 ILVVDDDMRLRALLERYLMEQGYQVRSAANAEQMDRLLERENFHLLVLDLML--PGEDGL 65 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112 + R +R + S +P++ ++ + + G DD + KP + RE + + Sbjct: 66 SICRRLRQNGSPIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQT 125 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + G + R+ E L E +L+ L+++ + +++ + Sbjct: 126 PDVPGAPTQQEEEITFGEFALNLATREMYHGEEAISLTSGEFAVLKVLVSHPREPLSRDK 185 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + + G D + E ++ +S+LR+ + + + + LGY Sbjct: 186 LMNLARGR-DYSALERSIDVQVSRLRRLIERDPANPRYIQTVWGLGYVF 233 >gi|148254647|ref|YP_001239232.1| two component transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146406820|gb|ABQ35326.1| two component transcriptional regulator, winged helix family [Bradyrhizobium sp. BTAi1] Length = 241 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 48/228 (21%), Positives = 88/228 (38%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G +E + + + R D+ ++ L GE L Sbjct: 8 LLMVEDDPEISRLVRDFMRREGFEIEVAENAAAMDAVLRRLRPDLIILDLML--PGEDGL 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R +R +P++ +S + + G DD + KP RE+LARV A+ RR + Sbjct: 66 SICRRLRQSDDIPILMLSAKSDEIDRVVGLELGADDYMVKPFGPRELLARVRALLRRAQA 125 Query: 122 SNNRAETGPIRVFSDGRDPEVQGE--------VFPLPRRERRILEYLMANRGKRVAKTQI 173 S R + D + + L E +L + + +++ QI Sbjct: 126 SPRREASRRFAFDRFVLDVDARSIETVSGGDAPIQLTSAEFDLLACFVQRPRRVLSRDQI 185 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220 G E + V+ IS+LR+KL G + + R GY Sbjct: 186 LDFTRGRSAEPFD-RTVDMLISRLRRKLEAASPGTSLITTVRNGGYLF 232 >gi|302186071|ref|ZP_07262744.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. syringae 642] Length = 225 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 45/220 (20%), Positives = 86/220 (39%), Gaps = 4/220 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++I+D D + G +++ L + ++ L G Sbjct: 4 LIIEDEEKTADYLRRGLTEQGYAVDVARDGIEGLHLALENDHAIVILDVML--PGLDGFG 61 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLKV 121 + R +RA Q P+I ++ + + G DD + KP E++AR+ A R Sbjct: 62 VLRALRARKQTPVIMLTAREQVDDRIRGLREGADDYLGKPFSFLELVARLQALTRRSGGH 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + + R G+ L +E +L L +G ++KT I ++ + Sbjct: 122 EPVQITIADLWIDLISRKATRAGQRLDLTAKEFSLLSVLARRQGDILSKTSIAEMVWDI- 180 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + NVVE I +LR KL + + R +GY ++ Sbjct: 181 NFDSDTNVVEVAIKRLRAKLDGPHEHKLLHTIRGMGYVLE 220 >gi|226307209|ref|YP_002767169.1| turgor pressure transcriptional regulator [Rhodococcus erythropolis PR4] gi|226186326|dbj|BAH34430.1| turgor pressure transcriptional regulator [Rhodococcus erythropolis PR4] Length = 226 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 50/224 (22%), Positives = 88/224 (39%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + G + ++ + DV ++ L Sbjct: 4 ILVVDDEPQILRALRINLTVRGYDVVTASTGAGALRAAAERPPDVVILDLGL--PDMDGT 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118 E+ +R P+I +S ++ D+G DD V KP E LARV A RR Sbjct: 62 EVLAGLRGWCTAPVIVLSARTDSADKVEALDAGADDYVTKPFGMDEFLARVRAAARRGTS 121 Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 S ET V + +GE L E +LE L+ NRGK V + ++ + Sbjct: 122 AADTSEPSVETASFTVDLAAKTVSRRGEQVHLTPTEWGMLEMLVRNRGKLVGQKELLREV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 +G E + + ++++LR+KL + + ++ +GY Sbjct: 182 WG-PAYDTETHYLRVYLAQLRRKLEDDPANPKHLITEAGMGYRF 224 >gi|91779387|ref|YP_554595.1| two component heavy metal response transcriptional regulator [Burkholderia xenovorans LB400] gi|91692047|gb|ABE35245.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia xenovorans LB400] Length = 226 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 43/222 (19%), Positives = 90/222 (40%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + G ++ + + D+ ++ L G+ Sbjct: 3 ILLVEDEPKTGAYLRKGLSEAGYVVDWAEDGVTGQHQAETEDYDLLILDVML--PGQDGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120 L +R P++ ++ + + + G DD + KP E++ARV +I R Sbjct: 61 TLLHNLRRTRSTPVLFLTARDDVGDRVRGLELGADDYLAKPFDFVELVARVRSILRRGKP 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + + R QG+V L +E +L LM G+ + + I S ++ + Sbjct: 121 RETMSLKVADLELDLTRRKATRQGDVILLTAKEFTLLWLLMRKEGEILPRATIASQVWDM 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + + NVV+S I +LR K+ + + + R +GY ++ Sbjct: 181 -NFNSDTNVVDSAIRRLRSKVDDAYEPKLIHTVRGMGYVLEV 221 >gi|282899667|ref|ZP_06307631.1| Multi-component Transcriptional regulator, Winged helix family [Cylindrospermopsis raciborskii CS-505] gi|281195546|gb|EFA70479.1| Multi-component Transcriptional regulator, Winged helix family [Cylindrospermopsis raciborskii CS-505] Length = 1317 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 51/222 (22%), Positives = 95/222 (42%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D L+ + ++E N + L + D+ ++ L + Sbjct: 3 ILVVEDDELIAYTLTNFLTEQNYAVELANDGKTAWDLVETYEYDLILLDIVL--PKLDGI 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L + IR+ + P++ ++ S D+G DD V KP E++ARV A+ RR Sbjct: 61 SLCKKIRSSGRRVPILLLTGRDSSHDKAIGLDAGADDYVVKPCDEEELVARVRALLRRGG 120 Query: 121 VSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 V++ E +R+ + Q + L +E +LE LM N + + I ++ Sbjct: 121 VNSQPVLEWRGLRLDPSSCEVTYQQDQLSLTPKEYALLELLMRNNRRVFSCGMILDHLWS 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220 D E+ V +HI LR KL+ D V++ +GY + Sbjct: 181 YEDTPGED-AVRTHIKGLRMKLKAAGAPHDLVETVYGIGYRL 221 Score = 67.0 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 13/79 (16%), Positives = 24/79 (30%), Gaps = 2/79 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++ DD + + L G + S + DV ++ L+ G E Sbjct: 1065 LVCDDDPITRQELENLLLQGGYRVLTVASGDQAIAQAVIQHPDVILLD--LVMPGMNGWE 1122 Query: 63 LPRIIRAHSQVPLIGISDY 81 ++ S I I Sbjct: 1123 TMAGLKKCSDTRDIPIVIC 1141 Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 26/71 (36%), Gaps = 2/71 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + L G+ + N + D+ ++ + Sbjct: 376 ILVVDDDLKTLELLQVLLTPWGLEIITLNHPGKFWETWEKIQPDMLILDI--EMPTMSGI 433 Query: 62 ELPRIIRAHSQ 72 EL ++IR+H Q Sbjct: 434 ELCKMIRSHDQ 444 Score = 39.3 bits (90), Expect = 0.38, Method: Composition-based stats. Identities = 7/37 (18%), Positives = 13/37 (35%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWL 38 ++I+D + D LFG + + L Sbjct: 1194 ILIIEDDHDLADLLATLFGRHEIETFIAKTGREAIHL 1230 >gi|268608227|ref|ZP_06141954.1| two component transcriptional regulator, winged helix family protein [Ruminococcus flavefaciens FD-1] Length = 262 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 50/221 (22%), Positives = 93/221 (42%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D + + F G ++ N E + E + ++ Sbjct: 43 ILLIEDDHDICEVITDYFNTKGTAVTAVNDGEKALGIIDEGLESYGLVLLDIMLPNADGF 102 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R IR S +P+I I+ + + +D G DD + KP + + A+ +R Sbjct: 103 TICRSIRKRSDIPVIFITARGREEDMIFGYDLGCDDYIVKPFLLSVLYMKCEAMMKRADK 162 Query: 122 SNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + E G IR+ + + + LP +E IL YLM ++ + + I + ++G Sbjct: 163 LSGQTVLECGAIRLDTRMLCCFINEKEIELPPKEFAILRYLMEHQDWTIDRDTILNRVWG 222 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D + VV+SHI KLRK L + + + GY + Sbjct: 223 -YDYFGSDRVVDSHIKKLRKALGSAGKQ--IKTVVGRGYRL 260 >gi|260548814|ref|ZP_05823036.1| transcriptional regulator [Acinetobacter sp. RUH2624] gi|260407982|gb|EEX01453.1| transcriptional regulator [Acinetobacter sp. RUH2624] Length = 228 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 44/224 (19%), Positives = 92/224 (41%), Gaps = 7/224 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L++D + G + F+ + + ++ ++ + L Sbjct: 5 MLVEDEVELAHLVRDYLEAAGFEVSMFHDGQDAYTSFQQRKPNLMILDLMV--PRMDGLT 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +R S +P+I ++ + + G DD V KP +E++ARV A+ RRL+ Sbjct: 63 ICRKVREQSDLPIIMVTARTEEIDRVLGLNMGADDYVCKPFSPKELVARVQAVLRRLERK 122 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 + R+ + Q + L E R+LE + + G+ ++ Q+ I Sbjct: 123 AEPEQNDSFRIDKAQQRIWYQQKSLSLTPTEFRLLELFLEHVGQVYSRAQLLDHI-NPDS 181 Query: 183 EAVEENVVESHISKLRKKL----RNKLGFDPVDSKRFLGYSIDW 222 V + V++SHI LR+K+ + + + +GY ++ Sbjct: 182 FDVADRVIDSHIKNLRRKITEVAETGNRHEWIQAVYGVGYRFEY 225 >gi|66046938|ref|YP_236779.1| response regulator receiver:transcriptional regulatory protein, C-terminal [Pseudomonas syringae pv. syringae B728a] gi|63257645|gb|AAY38741.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Pseudomonas syringae pv. syringae B728a] gi|330897073|gb|EGH28553.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. japonica str. M301072PT] gi|330941394|gb|EGH44220.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 225 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 55/223 (24%), Positives = 107/223 (47%), Gaps = 5/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D AL++ + G +E + E + + D++ I+ L G L Sbjct: 3 LLVVEDEALLRHHLRTRLTEAGHVVEAVANAEEALYQVAQFNHDLAVIDLGL--PGIGGL 60 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119 +L R +RA P++ ++ + Q ++ +G DD V KP E+ AR+ A + R Sbjct: 61 DLIRQLRALGKAFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + GP+ + + + + + L E RILEYLM + + V K ++ +Y Sbjct: 121 GFIQSTITAGPLLLDLNRKHAALAEQPLALTAYEYRILEYLMLHHQQVVPKERLMEQLY- 179 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 D+ + NV+E + +LR+KL + + F P+++ R +GY + Sbjct: 180 PDDDERDPNVIEVLVGRLRRKLDSSVAFKPIETVRGMGYLFNE 222 >gi|313123613|ref|YP_004033872.1| DNA-binding response regulator, ompr family (rec-whth domains) [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280176|gb|ADQ60895.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 225 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 44/220 (20%), Positives = 92/220 (41%), Gaps = 5/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++D +++ + + GF+ + ++R D+ ++ L G ++ Sbjct: 4 IWCVEDDESIREIEMYTLESMNFKVRGFDDGQSFFKALDNSRPDLVILDLMLPDEDGSEI 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119 L R A +P+I S + + DSG DD + KP E+++RV A+ R Sbjct: 64 LHRLRSTSATEDLPVIVASAKTAEYDKVKNLDSGADDYLTKPFGMMEMVSRVKAVLRRTN 123 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + ++ + I++ + G L +E +L+ L+ + G ++ +I I+ Sbjct: 124 RKKEDKIDKDGIKILLKRHEVFENGHQVDLTLKEYGLLKLLITHPGTVFSREEIMDQIW- 182 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 E V+ H+ LR+KL +++ R +GY Sbjct: 183 ETGFYGETRTVDVHVRTLRQKLGEAG--KHIETVRGVGYR 220 >gi|309774783|ref|ZP_07669805.1| DNA-binding response regulator [Erysipelotrichaceae bacterium 3_1_53] gi|308917468|gb|EFP63186.1| DNA-binding response regulator [Erysipelotrichaceae bacterium 3_1_53] Length = 236 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 43/236 (18%), Positives = 88/236 (37%), Gaps = 19/236 (8%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D +++ + G + + + + + ++ ++ + Sbjct: 5 ILVVEDEKGIREAIQIYLKNQGYHVFLAENGQEGLEIANRETIHLAVVDIM--MPVMDGI 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + IR P+I +S + + G DD + KP E+LARV + RR + Sbjct: 63 TMTMEIRKKYDFPIIFLSAKSEDIDKITGLNIGADDYITKPFGSMELLARVRSQLRRYEQ 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLP--------------RRERRILEYLMANRGKR 167 E + S+ + +E ILE LM + G+ Sbjct: 123 ILLLKEHASSTLKSEEEIYCIDALTLNSTTKEVLVDDVPVKLRPKEFMILELLMKHPGRV 182 Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 + QI+ A++ +EA+ V HI KLR+K+ + + +GY I+ Sbjct: 183 FSAQQIYEAVWN--EEAINTETVMVHIRKLREKIELDPKHPRYLKVVWGIGYKIEK 236 >gi|255523159|ref|ZP_05390131.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|255513274|gb|EET89542.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] Length = 262 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 47/228 (20%), Positives = 86/228 (37%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +LIDD + + +G + + D+ ++ Sbjct: 33 ILLIDDEIELLKLMETVLKKEGFRRISKAANGTDGIKTCKIENPDIVVLDVM--MPDIDG 90 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ + IR S VP+I +S + G DD V KP +E+ R+ A RR Sbjct: 91 FDVCKRIREFSFVPIIFLSAKSDDVDKILALGLGADDYVTKPFSPKEVAFRIKAHLRRNI 150 Query: 121 VSNN-------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 N + G I + + GE L +E +L Y+ N + + K I Sbjct: 151 YIKNELSVKEEKISFGDIVIDFQNGEVLKLGENIVLTPKEYHLLRYMAQNANQILTKQMI 210 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + ++ D +N + H+ KLR+KL + + + + + LGY + Sbjct: 211 CNEVWD-DDYEGYDNTIMVHMRKLRQKLEKDPSNPEYIITVKGLGYKL 257 >gi|229164200|ref|ZP_04292135.1| DNA-binding response regulator [Bacillus cereus R309803] gi|228619317|gb|EEK76208.1| DNA-binding response regulator [Bacillus cereus R309803] Length = 224 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 45/226 (19%), Positives = 90/226 (39%), Gaps = 12/226 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +++ +G + + DV ++ L Sbjct: 4 ILVVDDESSIRNLIRMQLEMEGYEVLTAADGREAVEKWNEG-PDVLILDVML--PDTDGY 60 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL R+ R +P++ ++ + L G DD V KP ++ E++ RV + RR+K Sbjct: 61 ELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMSRRVK 120 Query: 121 VSNNRAETGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 IR + R V GE L RE + + ++N + + ++ Sbjct: 121 KEEVTVSHEVIRAGELIICPKERKVHVGGEEIQLTYREFNLCQLFVSNPQRVFMRDELLE 180 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G F+ V+ + +LRKKL + + + +GY +D Sbjct: 181 KVWG-FEYIGNTRAVDIMVQRLRKKLGTSG--EYIKTIYGVGYKLD 223 >gi|163855906|ref|YP_001630204.1| two-component transcriptional regulator [Bordetella petrii DSM 12804] gi|163259634|emb|CAP41935.1| two-component transcriptional regulator [Bordetella petrii] Length = 235 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 39/221 (17%), Positives = 83/221 (37%), Gaps = 5/221 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D A + G ++ D ++ L L Sbjct: 5 LIVEDDADNARYIANGLKELGYDPVITMDGPTALQRATTEHWDAIILDRMLP-NDVDGLS 63 Query: 63 LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119 + +RA + P++ +S +L + +G DD + KP E+ Sbjct: 64 ILWSLRALGRKTPVLVLSALTALDERVRGLKAGGDDYLTKPFAFPELAARVEALIRRSSS 123 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + + G L RE ++L Y+M N G+ + +T + + ++G Sbjct: 124 GYERRQLTVADLSLDLVSGQVARGGRAITLQPREYKLLAYMMNNAGQVLTRTMLLATVWG 183 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + NV++ HIS+LR+K+ + + R +GY + Sbjct: 184 -YHYDPQTNVIDVHISRLRQKIDGPGEAPLIHTVRGVGYRL 223 >gi|330875656|gb|EGH09805.1| DNA-binding response regulator [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 249 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 47/225 (20%), Positives = 91/225 (40%), Gaps = 9/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD +++ + G + DV ++ L GE L Sbjct: 23 LIVDDDVAIRELLCDYLTRFNIQARGVTDGAQMRLALDEEKFDVVVLDLML--PGEDGLS 80 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R +R+ S +P++ ++ + + G DD + KP RE++AR+ I RR++ Sbjct: 81 LCRWLRSTSDIPILMLTARCEPTDRIIGLELGADDYMAKPFEPRELVARIQTILRRVRDE 140 Query: 123 NNRAETGPIRVFSD-----GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + + G V PL E R+L + + +++ Q+ A Sbjct: 141 RSDQRSTIRFDAWRLNSVLRQLTAADGLVVPLSNAEFRLLRVFLERPHRVLSREQLLDAA 200 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 G EA + ++ +S+LR+KL + + + R GY D Sbjct: 201 RGRSIEAFD-RSIDLLVSRLRQKLGDDPKNPQLIKTVRGEGYLFD 244 >gi|329847724|ref|ZP_08262752.1| phosphate regulon transcriptional regulatory protein PhoB [Asticcacaulis biprosthecum C19] gi|328842787|gb|EGF92356.1| phosphate regulon transcriptional regulatory protein PhoB [Asticcacaulis biprosthecum C19] Length = 229 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 52/225 (23%), Positives = 96/225 (42%), Gaps = 8/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ +D + +G + + + D+ + + Sbjct: 5 IIIAEDEDALSTLLHYNLEKEGYETAMAADGDEALMMIKERQPDLLVCDWM--MPKVSGI 62 Query: 62 ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 E+ R +R+ S P++ ++ + D+G DD V KP E LAR+ A+ RR Sbjct: 63 EVCRRLRSASPTRNLPIVMLTARSEESDRIRGLDTGADDYVVKPFSMVEFLARIRAVLRR 122 Query: 119 LKV--SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 ++ S+++ E G I V + G L E ++L++ M + ++ Q+ A Sbjct: 123 IRPGLSDDKVEFGEISVDRLSHRVQRCGRDIHLGPTEYKLLDHFMQYPKRVFSREQLLDA 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G D VE V+ HI +LRK L +DP+ + R GYS+D Sbjct: 183 VWGN-DVYVEARTVDVHIGRLRKALNKGDEYDPIRTVRSAGYSLD 226 >gi|254480429|ref|ZP_05093676.1| phosphate regulon transcriptional regulatory protein PhoB [marine gamma proteobacterium HTCC2148] gi|214039012|gb|EEB79672.1| phosphate regulon transcriptional regulatory protein PhoB [marine gamma proteobacterium HTCC2148] Length = 234 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 47/225 (20%), Positives = 96/225 (42%), Gaps = 10/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D ++D ++ L R D+ ++ L G LE Sbjct: 7 LVVEDEKAIRDMLRMALEVAKYRFIEAENIRDAHVLIVDERPDIVLLDWML--PGGSGLE 64 Query: 63 LPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 L R ++ +P+I ++ + + + G DD V KP RE++AR+ A+ RR Sbjct: 65 LLRRLKREDNTREIPVIMLTAKAAEDNVIQGLEVGADDYVTKPFAPRELIARIQALLRRS 124 Query: 120 KVSNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + G + SD R L E +L++ M++ + +++Q+ + Sbjct: 125 AKDSAQGRIGLNGLVLNSDSRRVFAGEIALNLGPTEFNLLQFFMSHPERAYSRSQLLDQV 184 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGF--DPVDSKRFLGYSI 220 +G + +EE ++ HI +LRK L+ + + + R +GY Sbjct: 185 WGA-NVYLEERTIDVHIRRLRKALQTDHADYGELIQTVRGIGYRF 228 >gi|126656994|ref|ZP_01728172.1| Two component Transcriptional regulator, Winged helix family protein [Cyanothece sp. CCY0110] gi|126621832|gb|EAZ92541.1| Two component Transcriptional regulator, Winged helix family protein [Cyanothece sp. CCY0110] Length = 237 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 43/227 (18%), Positives = 88/227 (38%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + F + +E + L D++ ++ L E Sbjct: 10 ILIVDDDPAICQLISRFFSYNNYYIESAADAKTARELFQKLSPDLAILDVNL--PDESGF 67 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAA 114 L + IR + ++ ++ L+ F+ G DD + KP + + R Sbjct: 68 SLCKEIRQTGTL-VLMLTCMTDTNCVLEGFEQGADDYLTKPFNLEILKAKIAALLKRRHG 126 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 L+ NN + + + + + EV P E +L +L + + ++ + Sbjct: 127 GEINLRTPNNSVIIDQLTIDPNRCEVTLNHEVLPFTSLEFELLYFLATHSNRVWERSDLI 186 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 SA++G E E V+ HI ++RKK+ + G + + R GY + Sbjct: 187 SAVWGDNYEIGAERKVDVHIGQIRKKINDLQGQR-IKTIRGKGYMFE 232 >gi|28868885|ref|NP_791504.1| transcriptional regulatory protein PhoP [Pseudomonas syringae pv. tomato str. DC3000] gi|213971922|ref|ZP_03400022.1| transcriptional regulatory protein PhoP [Pseudomonas syringae pv. tomato T1] gi|301384491|ref|ZP_07232909.1| transcriptional regulatory protein PhoP, putative [Pseudomonas syringae pv. tomato Max13] gi|302134652|ref|ZP_07260642.1| transcriptional regulatory protein PhoP, putative [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28852124|gb|AAO55199.1| transcriptional regulatory protein PhoP, putative [Pseudomonas syringae pv. tomato str. DC3000] gi|213923347|gb|EEB56942.1| transcriptional regulatory protein PhoP [Pseudomonas syringae pv. tomato T1] gi|330877107|gb|EGH11256.1| transcriptional regulatory protein PhoP [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330966567|gb|EGH66827.1| transcriptional regulatory protein PhoP [Pseudomonas syringae pv. actinidiae str. M302091] gi|331016773|gb|EGH96829.1| transcriptional regulatory protein PhoP, putative [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 225 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 55/223 (24%), Positives = 107/223 (47%), Gaps = 5/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D AL++ + G +E + E + + D++ I+ L G L Sbjct: 3 LLVVEDEALLRHHLRTRLTEAGHVVEAVANAEEALYQVAQFNHDLAVIDLGL--PGIGGL 60 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119 +L R +RA P++ ++ + Q ++ +G DD V KP E+ AR+ A + R Sbjct: 61 DLIRQLRALGKAFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + GP+ + + + + + L E RILEYLM + + V K ++ +Y Sbjct: 121 GFIQSTITAGPLLLDLNRKHAALGEQPLALTAYEYRILEYLMLHHQQVVPKERLMEQLY- 179 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 D+ + NV+E + +LR+KL + + F P+++ R +GY + Sbjct: 180 PDDDERDPNVIEVLVGRLRRKLDSSVAFKPIETVRGMGYLFNE 222 >gi|229163835|ref|ZP_04291778.1| DNA-binding response regulator [Bacillus cereus R309803] gi|228619655|gb|EEK76538.1| DNA-binding response regulator [Bacillus cereus R309803] Length = 231 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 42/226 (18%), Positives = 91/226 (40%), Gaps = 9/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G + + ++ + + ++ L Sbjct: 4 ILIVEDDPNISSLLQSHIQKYGYEAIVAENFDDIMESFNAVKPHLVLLDVNL--PKFDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 R IR S P+I IS + +SG DD + KP H+ ++A++ RR+ Sbjct: 62 YWCRQIRHESTCPIIFISARAGEMEQIMAIESGADDYITKPFHYDVVMAKIKGQLRRIYG 121 Query: 122 SNNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + I F + + E L ++E + E L++ + ++ + + Sbjct: 122 DYAPNISERIVEVEGLKLFPERPEIHFGAEQVLLTKKEAILAEMLLSKFPRTASREDLLA 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 A++ + VEEN + +I++LRKK + +++ R LGY + Sbjct: 182 ALWD-DESFVEENTLNVNITRLRKKFNELGIENAIETVRGLGYRFN 226 >gi|289434787|ref|YP_003464659.1| DNA-binding response regulator [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171031|emb|CBH27573.1| DNA-binding response regulator [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 228 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 43/228 (18%), Positives = 87/228 (38%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D V + F + + + + D++ I+ L + Sbjct: 3 LLMIEDNVSVCEMIEMFFMKEEIDATFVHDGKKGYETFLKEDFDIAIIDLML--PNMDGM 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 + R IR S +P+I ++ S + + G DD V KP ++AR+ A+ RR Sbjct: 61 TICRKIREVSDMPIIILTAKESESDQVLGLEMGADDYVTKPFSPLTLMARIKAVTRRKNS 120 Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + T + L +E +L +LM + + ++ Q+ Sbjct: 121 ATPAEADEDILETTYFKISKRTREIFYQGELLDALTPKEFDLLYFLMKHPRQVFSREQLL 180 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 ++G + +E V+ HI +LR+K+ + + +GY D Sbjct: 181 EQVWG-YQFYGDERTVDVHIKRLRQKIATDTKP-FLHTIWGVGYKFDE 226 >gi|221069740|ref|ZP_03545845.1| two component transcriptional regulator, winged helix family [Comamonas testosteroni KF-1] gi|220714763|gb|EED70131.1| two component transcriptional regulator, winged helix family [Comamonas testosteroni KF-1] Length = 270 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 48/221 (21%), Positives = 92/221 (41%), Gaps = 5/221 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++I+D AL G + DV ++ L G L+ Sbjct: 41 LIIEDDALNARYIAEGLRQQGAHVSVCADGVQGIAQAVGENWDVIILDRMLP-NGFDGLQ 99 Query: 63 LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA--AIYRRL 119 + + +R+ Q P++ +S + + +G DD + KP E+ AR+ ++ Sbjct: 100 ILQALRSMGKQTPVLVLSALSATDERVRGLKAGCDDYLTKPFAFSELSARLEALVRRAQI 159 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + +RV R E G+ L RE R+L +LM + + V +T + +++ Sbjct: 160 PAPTREMQVADLRVNLISRSAERAGQPLSLQPREFRLLAFLMQHAHQIVTRTMLLESVWD 219 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + NV++ HIS+LR K+ + + R +GYS+ Sbjct: 220 -YRFDPQTNVIDVHISRLRSKVDKGFATPLIHTVRGVGYSL 259 >gi|71064707|ref|YP_263434.1| osmolarity response regulator [Psychrobacter arcticus 273-4] gi|93004966|ref|YP_579403.1| osmolarity response regulator [Psychrobacter cryohalolentis K5] gi|71037692|gb|AAZ18000.1| transcriptional regulatory protein, OmpR [Psychrobacter arcticus 273-4] gi|92392644|gb|ABE73919.1| two component transcriptional regulator, winged helix family [Psychrobacter cryohalolentis K5] Length = 254 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 36/229 (15%), Positives = 88/229 (38%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++ DDG + + + L + ++ L GE + Sbjct: 14 ILVVDDDARLRSLLQRFLEDDGFVVRTAHDGSQMDKLLQRELFSLVVLDLML--PGEDGI 71 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112 + + +R + +P+I ++ + ++G DD + KP + +E + + Sbjct: 72 SICKRLREDNGDIPIIMLTAKGGDADRIAGLEAGADDYLPKPFNPKELLARIKAVLRRQN 131 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + E GP + R + G V L E +L+ L+ + + + + + Sbjct: 132 RELPGAPSHQLEVVEFGPWTLDLSTRTLKRDGNVVTLTTGEFSVLKALVQHPREPLTRDK 191 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + + G + E ++ +S+LR+ + + + + +GY Sbjct: 192 LMNLARGR-EWGAMERSIDVQVSRLRRLIEDNPSQARYIQTVWGVGYVF 239 >gi|322807669|emb|CBZ05244.1| two-component response regulator [Clostridium botulinum H04402 065] Length = 230 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 38/226 (16%), Positives = 86/226 (38%), Gaps = 9/226 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + + + + E S + ++ ++ E Sbjct: 6 LIVDDDKTIVEFLQIFLIKEEYEVRISYNGEEALDKIRSEQFNLILMDIM--MPKLDGFE 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-----ARVAAIYR 117 + IR + +P+I ++ S Q + F SG DD + KP E+ Sbjct: 64 AIKRIRRLTNIPIIFLTAKDSQQDKIKGFISGCDDYITKPFDLVELSLRVSAILKRVSTS 123 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 ++ + + + + + + L +E IL L N+G+ ++I+ + Sbjct: 124 VIEENEDIIKVKDLELNLKEHTLYKEKNEIKLTPKEFDILFLLARNKGRIFPSSEIYERV 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222 +G + +N + +HI LR+KL + + + +GY I+ Sbjct: 184 WGQ-EFLENDNSLLTHIRNLREKLSDTVKNSKYIKTVWGVGYKIEK 228 >gi|145296603|ref|YP_001139424.1| hypothetical protein cgR_2511 [Corynebacterium glutamicum R] gi|140846523|dbj|BAF55522.1| hypothetical protein [Corynebacterium glutamicum R] Length = 240 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 48/223 (21%), Positives = 90/223 (40%), Gaps = 9/223 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + G ++ N + R D ++ G E Sbjct: 17 LVVDDEPNIVELLTVSLKFQGFAVMTANDGNEALKIAREFRPDAYILDVM--MPGMDGFE 74 Query: 63 LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L +R+ P++ ++ +++ + G DD V KP E++ R+ I RR Sbjct: 75 LLTKLRSEGLDSPVLYLTAKDAVEHRIHGLTIGADDYVTKPFSLEEVITRLRVILRRGGA 134 Query: 122 SNNRAETGPIRVF----SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 T + + GE+ L E +L YLM N ++K +I + Sbjct: 135 VEEDTSTSLQYADLTLNDETHEVTKAGELIDLSPTEFNLLRYLMLNAEVVLSKAKILDNV 194 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + +D + NVVES+IS LR+K+ + + + R +GY + Sbjct: 195 W-HYDFGGDGNVVESYISYLRRKV-DTQEPQLIQTVRGVGYVL 235 >gi|134094343|ref|YP_001099418.1| response regulator [Herminiimonas arsenicoxydans] gi|133738246|emb|CAL61291.1| Phosphate regulon transcriptional regulatory protein PhoB [Herminiimonas arsenicoxydans] Length = 229 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 40/222 (18%), Positives = 93/222 (41%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++++D + + G ++ + + ++ L G ++ Sbjct: 8 ILIVEDEPPIIELVTFTLKGAGWNVTAVQTAGEAWDFIQQRLPQLILLDWMLPDQSGLRL 67 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118 L R R +++P+I ++ + + D+G DD V KP RE+ AR+ A + Sbjct: 68 LSRIRADRQFNELPIIMLTAKSMEEDKIAGLDNGADDYVTKPFSPRELTARINALLRRKT 127 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + G I + + E + E ++L++ +A+ + +++Q+ ++ Sbjct: 128 PEHAQTLMTAGSISLDPISCSVSMNDEKIDIGHAEFKLLKFFLAHPDRVFSRSQLLDKVW 187 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G +EE V+ H+ +LRK L+ + + R +GY + Sbjct: 188 GDH-VVIEERTVDVHVLRLRKALKE--AEHLIKTVRSVGYML 226 >gi|2245588|gb|AAB92482.1| IrlR [Burkholderia pseudomallei 1026b] Length = 229 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 41/222 (18%), Positives = 87/222 (39%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + G + + D+ ++ L G Sbjct: 3 ILIVEDEPKTGMYVRKGLTEAGFIADWVEDGVTGLHQAETEEYDLIILDVML--PGHDGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120 + +R P++ ++ + + + G DD V KP E++ARV +I R Sbjct: 61 TVLERLRRAHSTPVLFLTARDDVGDRVKGLELGADDYVVKPFDFVELVARVRSILRRGQA 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + + R QG+V L +E +L LM G+ + + I S ++ + Sbjct: 121 RESTVLRIADLELDLTRRKATRQGDVVLLTAKEFALLWLLMRREGEILPRATIASQVWDM 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + + NVV++ I +LR K+ + + + R +GY ++ Sbjct: 181 -NFNSDTNVVDAAIRRLRSKIDDAYEPKLIHTVRGMGYVLEV 221 >gi|77406903|ref|ZP_00783927.1| response regulator [Streptococcus agalactiae H36B] gi|77174489|gb|EAO77334.1| response regulator [Streptococcus agalactiae H36B] Length = 217 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 47/219 (21%), Positives = 96/219 (43%), Gaps = 6/219 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++++G A ++G + + L+ + + L+ Sbjct: 3 ILVVDDEDMIREGVAAFLREEGYHVILAKDGQEA--LEKFHEFPIHLMVLDLMLPKRSGF 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + I + +P+I +S +T + FD DD V KP ++ R+ A+ RR V Sbjct: 61 EVLKEINGNHDIPVIVLSALGDEETQIQVFDLYADDHVTKPFSLVLLVKRIQALLRRYYV 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + V V+ E + +E +L+ L+ ++ + +++ QI +I F Sbjct: 121 VEDIWHYQDVAVDFTSYQARVKNEEVAIKPKELLVLKCLIQHKNQVLSREQILESISNDF 180 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + VV+ +I LRKKL D + + + GY I Sbjct: 181 ADLPLDRVVDVYIRNLRKKLDL----DCIVTVKNAGYKI 215 >gi|298248618|ref|ZP_06972423.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297551277|gb|EFH85143.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 228 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 45/221 (20%), Positives = 88/221 (39%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G +++ + SA ++ L + L Sbjct: 3 ILIVEDNHQLNYELKQSLTYEGHAVDTAYDGDAGLAFAESAPYAAIILDVLL--PVKDGL 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +RA P++ ++ ++ + DSG DD + KP E+LAR+ A+ RR Sbjct: 61 EVCRTLRARGYTVPILLLTARDAIDDRVRGLDSGADDYLVKPFALSELLARLRALLRRTS 120 Query: 121 VSNNRAETGPIRVFS-DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 G+ L +LEYLM + ++ I + I+ Sbjct: 121 PQKTPVLCVGDLTIELATHRVTRGGQQIELTTMLFTLLEYLMRHPNHILSHDMIANHIWS 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D N +E +I +LR+K+ + V++ R GY + Sbjct: 181 -YDTPGTPNAIEVYIRRLRRKIDDPFEIKLVETVRGAGYRL 220 >gi|295704273|ref|YP_003597348.1| two-component response regulator [Bacillus megaterium DSM 319] gi|294801932|gb|ADF38998.1| two-component response regulator [Bacillus megaterium DSM 319] Length = 226 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 41/225 (18%), Positives = 88/225 (39%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD +++ ++G ++ L D+ ++ + Sbjct: 5 ILIIDDDEQIRNLIAIYLENEGFEALKVSNAVCGLALLEEQEVDLIILDIM--MPQMNGI 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAIY 116 + IR +P+I +S + +G DD + KP + R Sbjct: 63 DAAFKIREEKNMPIIMLSAKSEDMDKISGLTAGADDYLTKPFNPLELIARVKSQIRRYKK 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + + G + + R V+G+ L +E ILE L+ ++G ++ +I+ A Sbjct: 123 YNERAERDIIQIGDLEINRSTRLVFVRGQEIRLTPKEFDILELLVRHKGTVMSMGKIYEA 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220 ++ D +N V HI+K+R+K+ + + + +GY I Sbjct: 183 VW-QEDAFKSDNTVMVHITKIREKIEDNPKKPIYIKTIWGVGYRI 226 >gi|268319761|ref|YP_003293417.1| two-component system response regulator [Lactobacillus johnsonii FI9785] gi|262398136|emb|CAX67150.1| two-component system response regulator [Lactobacillus johnsonii FI9785] Length = 236 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 44/231 (19%), Positives = 95/231 (41%), Gaps = 13/231 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D V + F + ++ + A + + L + + Sbjct: 4 ILMVEDDNSVAEMMKMFFSKEQWDVDIAKDGVEAVEMFKKAPDSYDIVTLDLNLPKKDGM 63 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ + IRA S +P+I ++ S + G D+ V KP ++AR+ A+YRR Sbjct: 64 EVAKEIRAISLSIPIIMLTARDSESDQILGLGIGADEYVTKPFSPLALIARIKALYRRSH 123 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPL----------PRRERRILEYLMANRGKRVAK 170 + + + I+ + ++ + + +E +L + + ++ Sbjct: 124 LEKDMHASNGIKYDVVTKHLKISKDRREVRFDDKVVEGLTPKEFDLLYTMAQKPKQVFSR 183 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ ++G ++ EE V++HI KLR+KL K G V + +GY D Sbjct: 184 DKLLELVWG-YEFFGEERTVDAHIKKLRQKLE-KAGPQVVQTVWGVGYKFD 232 >gi|115377140|ref|ZP_01464354.1| DNA-binding response regulator PhoB [Stigmatella aurantiaca DW4/3-1] gi|310822862|ref|YP_003955220.1| phosphate regulon transcriptional regulatory protein phob [Stigmatella aurantiaca DW4/3-1] gi|115365849|gb|EAU64870.1| DNA-binding response regulator PhoB [Stigmatella aurantiaca DW4/3-1] gi|309395934|gb|ADO73393.1| Phosphate regulon transcriptional regulatory protein PhoB [Stigmatella aurantiaca DW4/3-1] Length = 229 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 44/224 (19%), Positives = 87/224 (38%), Gaps = 11/224 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + G S + E S + ++ L E Sbjct: 5 LIVDDERDLAELIDFNLQAAGFSTRVAATGEAALTAASEHPPHLVLLDLML--PDISGTE 62 Query: 63 LPRIIRAHSQVPL---IGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIY 116 + R +R+++ + ++ + F+ G DD V KP RE + + Sbjct: 63 VCRQLRSNALTRDVLVVMLTAKGEEADRVRGFEVGADDYVTKPFSVRELVLRIKAILRRG 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 K GP+ + V+G+ L E R+LE++M G+ + Q+ Sbjct: 123 TPAKEGAAPLTLGPLTLDVATHRFYVEGKEVLLTALEFRLLEHMMTRLGRVQTREQLLEE 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++GL +E +++H+ +LR KL +++ R +GY I Sbjct: 183 VWGLS-SNLETRTIDTHVMRLRDKLG--PARAHLETVRGVGYRI 223 >gi|113866325|ref|YP_724814.1| DNA-binding response regulator CreB [Ralstonia eutropha H16] gi|113525101|emb|CAJ91446.1| response regulator, OmpR-family [Ralstonia eutropha H16] Length = 232 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 44/226 (19%), Positives = 86/226 (38%), Gaps = 9/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + D + DG+ E + D+ ++ L Sbjct: 9 ILVVEDEQAIADTILYALRTDGMLAEHCTLGGAALERMRAGAADLVILDVGL--PDLSGF 66 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117 E+ R +R S P++ ++ + + G DD V KP R + A + Sbjct: 67 EVCRTLRTFSNAPVVFLTARHEEIDRIVGLEIGADDYVVKPFSPRELAARVRAILRRARG 126 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + E DG +G L R E +L +L+ + G+ ++ Q+ + Sbjct: 127 GGATAAKSDEVAGFTHDKDGARLAYRGRWLELTRYEYLLLAWLVTHPGRIYSRAQLMECV 186 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL--GFDPVDSKRFLGYSID 221 + + V++HI LR KLR G + + + R +GYS++ Sbjct: 187 W-EDALDTSDRTVDTHIKTLRAKLREASADGAERIRTHRGMGYSLE 231 >gi|326385473|ref|ZP_08207112.1| two component transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] gi|326210012|gb|EGD60790.1| two component transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] Length = 235 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 44/227 (19%), Positives = 88/227 (38%), Gaps = 12/227 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 + ++D ++ D G + + + + D+ ++ L G L Sbjct: 6 ILFVEDDPALRLLTARALRDYGYDVRTAATGAEMWAMLETQPADLIVLDIML--PGGNGL 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL R +R S+VP+I +S S + + + G DD + KP RE+ AR+AA++RR Sbjct: 64 ELLRRLRKQSEVPVIFVSARGSEEDRVLGLELGADDYLPKPFGTRELAARIAAVFRRGSA 123 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEV--------FPLPRRERRILEYLMANRGKRVAKTQI 173 + +G L E +L + + VA+ ++ Sbjct: 124 AGGAVGASHGDFLFEGWTLSPARHELRASDGTLVDLTGAEFELLTTFVEQPQRVVARHRL 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + + ++ +S+LR+KL + + + R +GY Sbjct: 184 LE-LSRMRLGDSSDRSIDVLVSRLRRKL-DCGDGRLIVTVRGVGYMF 228 >gi|310659563|ref|YP_003937284.1| DNA-binding response regulator in two-component system with yedv [Clostridium sticklandii DSM 519] gi|308826341|emb|CBH22379.1| DNA-binding response regulator in two-component system with YedV [Clostridium sticklandii] Length = 231 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 42/226 (18%), Positives = 92/226 (40%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + +G + + S D+ ++ L + Sbjct: 6 ILIIEDEYNIARFLQLELEHEGYEVGISHDGREGLDKACSDYFDLLILDVML--PSLNGV 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARVAA 114 E+ R +R S +P++ ++ + + D G DD + KP R I R+ Sbjct: 64 EVLRRLRQKSDMPVVMLTAKDEMNDKILGLDIGADDYMTKPFAIEELLARIRVIFKRMDN 123 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 +++ + + D + + L +RE +L+Y+M N+ + + I Sbjct: 124 YKASKPQNDSILRIKGVNLDIDRYTVTYKEKNIDLTKREFELLKYMMQNKNLVITREMIL 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + ++G ++ + NVV+ +I LR K+ ++ G + + R +GY I Sbjct: 184 AKVWG-YEYMGDTNVVDVYIRYLRSKIDDQFGIKLIHTIRGVGYQI 228 >gi|167587464|ref|ZP_02379852.1| two component transcriptional regulator, winged helix family protein [Burkholderia ubonensis Bu] Length = 233 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 46/226 (20%), Positives = 83/226 (36%), Gaps = 8/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++I+D + + G + E L S D+ ++ L G G Sbjct: 5 ILVIEDEPAISELISVNLQHAGHCPIRAYNAEQAANLISDVLPDLVLLDWMLPGKSGIAF 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 R +P+I ++ Q + + G DD V KP +E++AR+ A+ RR Sbjct: 65 ARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVLRRRA 124 Query: 121 VSNNRAETG------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + L E R+L + M + + ++TQ+ Sbjct: 125 PQLTEDVVSINGLRLDPATHRVAAHADGSEIKLDLGPTEFRLLHFFMTHPERVHSRTQLL 184 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G VEE V+ HI +LR L+ +++ R GY + Sbjct: 185 DQVWGDH-VFVEERTVDVHIKRLRAALKPAGCDAMIETVRGSGYRL 229 >gi|57866897|ref|YP_188567.1| DNA-binding response regulator ArlR [Staphylococcus epidermidis RP62A] gi|242242696|ref|ZP_04797141.1| DNA-binding response regulator [Staphylococcus epidermidis W23144] gi|81674611|sp|Q5HPC3|ARLR_STAEQ RecName: Full=Response regulator ArlR gi|57637555|gb|AAW54343.1| DNA-binding response regulator ArlR [Staphylococcus epidermidis RP62A] gi|242233832|gb|EES36144.1| DNA-binding response regulator [Staphylococcus epidermidis W23144] gi|319400771|gb|EFV88990.1| response regulator [Staphylococcus epidermidis FRI909] Length = 219 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 49/219 (22%), Positives = 88/219 (40%), Gaps = 4/219 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + +++ N + S D+ ++ L L Sbjct: 4 ILIVEDEQNLARFIELELTHENYTVDIENDGKAGLDKALSKPYDLYILDLML--PNINGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR + P+I I+ + D G DD + KP E+L R + Sbjct: 62 EICRQIRQKTTTPIIIITAKSETYDKVAGLDYGADDYIVKPFDIEELL-ARIRAVLRRQP 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + I + D V G L + E +L L NR + + QI ++G + Sbjct: 121 DKDVLDINGIIIDKDAFKVTVNGHQLELTKTEYDLLYVLAENRNHVMQREQILDHVWG-Y 179 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + VE NVV+ +I LR KL+ +++ R +GY I Sbjct: 180 NSEVETNVVDVYIRYLRNKLKPFNKEKSIETVRGVGYVI 218 >gi|332295042|ref|YP_004436965.1| two component transcriptional regulator, winged helix family [Thermodesulfobium narugense DSM 14796] gi|332178145|gb|AEE13834.1| two component transcriptional regulator, winged helix family [Thermodesulfobium narugense DSM 14796] Length = 224 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 47/222 (21%), Positives = 100/222 (45%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + + +G + S + A+ + ++ L Sbjct: 5 ILLVEDDIDISNNIKTFLSLNGFEVIQAFSASDAFDVFDEAKVSLIILDLML--PDMFGS 62 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ +++RA ++P++ +S + D G DD + KP +E+LAR+ ++ RR Sbjct: 63 EILKVLRARGLEIPILVLSALTEEHNKVSLLDLGADDYLTKPFGMKELLARIRSLIRRKN 122 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 E GP RV + QG + L E ++L +L N G+ ++ ++ ++G Sbjct: 123 GFGLVVEKGPFRVDKEKSQIYFQGNLMNLTATEYKLLLFLFENNGRTYSREKLIDKVWGE 182 Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 + VE +V+ +I +LR+K+ + + ++R GY ++ Sbjct: 183 -EYFVEARMVDVYIRRLREKIETDPSNPQILKTRRGFGYVLE 223 >gi|324991387|gb|EGC23320.1| DNA-binding response regulator [Streptococcus sanguinis SK353] gi|325695020|gb|EGD36924.1| DNA-binding response regulator [Streptococcus sanguinis SK150] gi|327460903|gb|EGF07236.1| DNA-binding response regulator [Streptococcus sanguinis SK1057] gi|328946623|gb|EGG40761.1| DNA-binding response regulator [Streptococcus sanguinis SK1087] gi|332362340|gb|EGJ40140.1| DNA-binding response regulator [Streptococcus sanguinis SK1056] gi|332367257|gb|EGJ44992.1| DNA-binding response regulator [Streptococcus sanguinis SK1059] Length = 238 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 40/220 (18%), Positives = 85/220 (38%), Gaps = 6/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D +++ + G + + + ++ L Sbjct: 14 ILLVEDDPVIRQMIKKMLEQWGFQVVAVEDFMDVLTVFVREEPHLVLMDIGLPL--FNGY 71 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 + IR S VP++ +S + + G DD V KP + LA+V Sbjct: 72 HWCQEIRKISTVPIMFLSSRDQSMDIVMAINMGADDYVTKPFDNNVFLAKVQGLLRRSYE 131 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + E + + D G+V L + E +IL L + VA+ + ++ Sbjct: 132 FGNDQSLLEHQGVILNLKSTDLVFDGKVVTLTKNEFQILRVLFEHSDGIVARDDLMKELW 191 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 D +++N + ++++LRKKL + +++K+ +GY Sbjct: 192 -NSDFFIDDNTLSVNVARLRKKLEEHGLKNFIETKKGIGY 230 >gi|294499648|ref|YP_003563348.1| two-component response regulator PhoP [Bacillus megaterium QM B1551] gi|294349585|gb|ADE69914.1| two-component response regulator PhoP [Bacillus megaterium QM B1551] Length = 230 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 41/223 (18%), Positives = 86/223 (38%), Gaps = 9/223 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + F +G ++ + E +S R DV ++ Sbjct: 5 ILVVDDEKSIATAVSYAFKREGYIVDTASDGEEALEKVTSFRPDVMILDVM--MPKLTGY 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116 E+ R + + +I ++ + + + G DD + KP RE++AR Sbjct: 63 EVCRKLENRRGMGIILLTVKNDIVDKVLGLELGADDYMTKPFDVRELVARAKALVRRMEK 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + G ++V R V ++ L +E ++ L+AN + + + Sbjct: 123 NEAPEAVGEITVGKVKVNLIQRTLHVANDLVKLTPKEFDLIALLLANLERVYTREDLLDL 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 ++G+ D A V+ H+ +LRKK+ + + +GY Sbjct: 183 VWGM-DYAGGTRTVDIHMQRLRKKVGEA-EPYLLQTVYGVGYK 223 >gi|154496215|ref|ZP_02034911.1| hypothetical protein BACCAP_00500 [Bacteroides capillosus ATCC 29799] gi|150274298|gb|EDN01375.1| hypothetical protein BACCAP_00500 [Bacteroides capillosus ATCC 29799] Length = 233 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 44/229 (19%), Positives = 83/229 (36%), Gaps = 11/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD + +G + + ++ G + Sbjct: 7 ILICDDDKDIVSALDIYLTSEGYKTFKAYDGLEALKVVDQQDIQLVLLDVM--MPGLDGI 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 +R +P+I ++ + + G DD + KP + E++ARV + RR Sbjct: 65 RTTAKLRESKNIPIILLTAKSEDSDKILGLNIGADDYITKPFNPIEVIARVKSQLRRYTT 124 Query: 120 -----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 K +N G I + + V GE L E IL+ L+ + G+ + +QI+ Sbjct: 125 LGGREKTEDNVIRNGGIAMDDGAKSVTVDGESVSLTPIEYNILKLLLKSPGRVYSTSQIY 184 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 ++ EN V HI LR+K+ + + LGY ++ Sbjct: 185 EQVWNDP-SLGSENTVAVHIRHLREKIEIDPANPRYIKVVWGLGYKMEK 232 >gi|330808333|ref|YP_004352795.1| two-component response regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327376441|gb|AEA67791.1| two-component response regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 232 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 45/223 (20%), Positives = 91/223 (40%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD ++ G + + + + D+ ++ L Sbjct: 7 LLVIDDEPQIRKFLRISLSSQGYKVLEAGTGAEGLAQAALNKPDLLVLDLGL--PDMDGQ 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R R S VP++ +S S ++ D+G +D V KP +E LARV A+ R+ Sbjct: 65 QVLREFRQWSTVPVLVLSVRASEAQKVEALDNGANDYVTKPFGIQEFLARVRALLRQAPA 124 Query: 122 SNNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + GP+ V R + L R+E +L L + G+ + + Q+ I+ Sbjct: 125 GEPQEAALKFGPLTVDLAYRRVLLDDTEVALTRKEYAVLAQLARHPGRVITQQQLLKDIW 184 Query: 179 GLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220 G + + + + LR+KL + + ++ +GY + Sbjct: 185 GPTHTE-DSHYLRIVVGHLRQKLADDPTRPRFIVTEAGVGYRL 226 >gi|325066734|ref|ZP_08125407.1| two component transcriptional regulator, winged helix family protein [Actinomyces oris K20] gi|326773080|ref|ZP_08232364.1| DNA-binding response regulator PhoP [Actinomyces viscosus C505] gi|326637712|gb|EGE38614.1| DNA-binding response regulator PhoP [Actinomyces viscosus C505] Length = 249 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 44/230 (19%), Positives = 85/230 (36%), Gaps = 14/230 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++D + G + D+ ++ L Sbjct: 17 LLVVDDEPNIRDLLASSLRFAGFEVSIAGDGNGALKTVEKTSPDLVVLDVML--PDMDGF 74 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI----HHREILARVAAIY 116 + R +R P++ ++ + + G DD V KP I A + + Sbjct: 75 TVARRLRERDVTTPILFLTARDDMADKVQGLTVGGDDYVTKPFGLEEVIARIRAILRRTH 134 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + + D + L E ++L YLM N G+ V+K QI Sbjct: 135 AIENQDDGVVRVADLVLDEDAHEVYRAEVEVDLSPTEFKLLRYLMLNAGRVVSKAQILDH 194 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFD------PVDSKRFLGYSI 220 ++ +D + +VES+IS LR+K+ G D + ++R +GY + Sbjct: 195 VW-EYDWNGDAAIVESYISYLRRKVDQIQGADGQPVTPLIQTRRGVGYML 243 >gi|313679439|ref|YP_004057178.1| two component transcriptional regulator, winged helix family [Oceanithermus profundus DSM 14977] gi|313152154|gb|ADR36005.1| two component transcriptional regulator, winged helix family [Oceanithermus profundus DSM 14977] Length = 222 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 49/221 (22%), Positives = 96/221 (43%), Gaps = 8/221 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ A +G L L +A ++ L L Sbjct: 4 ILIVDDDPAIREILRAYLSHEGYELSEAADGVSALALAPAADL--VVLDLML--PEMDGL 59 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +R ++P++ ++ + + F+ G DD V KP RE++ARV A+ RR Sbjct: 60 EVARHLRRDFPELPILMLTARGEEEERVRGFEEGADDYVTKPFSPRELVARVRALLRRSG 119 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + V R+ + G L + E +L L + G ++ ++ ++G Sbjct: 120 IHDRLVYGDLEIV-PGSREVYLAGRPVELSKLEFDLLLTLAQHPGMVFSRERLLERVWG- 177 Query: 181 FDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 D E VV+ H++ LRK+L ++ +++ R +GY Sbjct: 178 SDFFGVERVVDVHVASLRKRLGDEPDRPRFIETVRGVGYRF 218 >gi|150015478|ref|YP_001307732.1| two component transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149901943|gb|ABR32776.1| two component transcriptional regulator, winged helix family [Clostridium beijerinckii NCIMB 8052] Length = 235 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 38/233 (16%), Positives = 80/233 (34%), Gaps = 15/233 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++D DG + L D+ ++ + Sbjct: 6 ILIVDDEKEIRDLVDIYLKSDGFNTINACDGLEAINLVRDNDIDLIILDVM--MPNLNGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----------REILA 110 E IR ++P+I +S + + G DD + KP + R Sbjct: 64 ETCLKIREIKEMPIIMLSAKSEDIDKILGLNMGADDYLTKPFNPLELVARVKSQLRRFHM 123 Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 N + +++ + + + + L E IL L +RGK + Sbjct: 124 FGKNTNMLEVEEENIIQIEDLKIKLETHEVLLGDNIVKLTPTEFDILSLLAQSRGKVFSI 183 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 I+ +++ + +N V HI K+R+K+ + + +GY ++ Sbjct: 184 ENIYESVWNQ-EFMTSDNTVMVHIRKIREKIEENPRNPRFIKTVWGVGYKVEK 235 >gi|145219952|ref|YP_001130661.1| two component transcriptional regulator [Prosthecochloris vibrioformis DSM 265] gi|145206116|gb|ABP37159.1| two component transcriptional regulator, winged helix family [Chlorobium phaeovibrioides DSM 265] Length = 236 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 46/229 (20%), Positives = 91/229 (39%), Gaps = 12/229 (5%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + ++++D + G + E S D+ ++ L G Sbjct: 5 LLLVVEDDRNLAKLVGYNLEKAGYKCLFSENGEDAFDQLSRRSFDLVLLDVML--PGIDG 62 Query: 61 LELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 E+ R IR H P+I ++ + F+ G+DD V KP RE+ R+ A+ + Sbjct: 63 FEVCRKIRQHQIYKDIPIIMLTAKGEEIDKILGFELGIDDYVVKPFSPRELTLRIRAVLK 122 Query: 118 RLKVSNNRAETGPI----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 R + V + G+ L E ++L L+ +G+ ++ + Sbjct: 123 RDRRQGGVFREALKAGGLEVDIARHSVTLDGQELVLTLMEFKLLVALLKRKGQAQSREML 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 S ++ + D ++ +++HI++LR+KL + + R LGY D Sbjct: 183 LSDVWDV-DRSINTRTIDTHITRLREKLGESGRQ--IKTVRGLGYKFDE 228 >gi|325478552|gb|EGC81664.1| putative sensory transduction protein RegX3 [Anaerococcus prevotii ACS-065-V-Col13] Length = 237 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 41/225 (18%), Positives = 86/225 (38%), Gaps = 10/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + D DG ++ + + D+ ++ L Sbjct: 6 ILIVEDEKSISDIVKNYLIRDGYNVFQAFDGLEALKIFDNEEIDLIILDLML--PKMSGE 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + IR S+VP+I S ++ G DD V KP ++E++ RV A+ RR++ Sbjct: 64 DVIKNIRNKSKVPVIITSAKVEEIDRINGLRLGADDYVTKPFSNKELVERVKAVLRRIEK 123 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFP------LPRRERRILEYLMANRGKRVAKTQIFS 175 N L + E I++ L ++ K + +I Sbjct: 124 YNIPRADIIKTSDGRLLMDLKYNRFLKDGEEVFLTKNEFSIIKTLFSSPNKIFTRDEIIE 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYS 219 +GL D + +++HI +R+K+ + + + +GY Sbjct: 184 LTFGL-DYDAYDRAIDTHIKNIRQKIEDNPKKPQYIKTIYGMGYK 227 >gi|266623167|ref|ZP_06116102.1| regulatory protein VanR [Clostridium hathewayi DSM 13479] gi|288865034|gb|EFC97332.1| regulatory protein VanR [Clostridium hathewayi DSM 13479] Length = 235 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 39/230 (16%), Positives = 82/230 (35%), Gaps = 13/230 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D ++ + + F S E S D++ ++ L L Sbjct: 5 ILIVDDEKEIADLIEVYLQNENMDVYKFYSGEEALVCIGSTDFDLAILDIML--PDISGL 62 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH---------REILAR 111 + + IR P+I ++ + G DD + KP + + Sbjct: 63 SICQSIRSKEYTYPVIMLTAKDGETDKITGLTLGADDYITKPFLPLELVARVKAQLRRYK 122 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + + +N + + + + + GE L E IL L+ R V+ Sbjct: 123 KYNVGAVVPAANEIFKYAGLTMNIKTYECRLNGEALSLTPTEFSILRILLERRCSVVSAE 182 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 ++F ++ N + HI LR+K+++ + + +GY I Sbjct: 183 ELFHEVWQEEYYTKSNNTITVHIRHLREKMKDTGENPRYIKTVWGVGYKI 232 >gi|254386477|ref|ZP_05001780.1| two-component system response regulator [Streptomyces sp. Mg1] gi|194345325|gb|EDX26291.1| two-component system response regulator [Streptomyces sp. Mg1] Length = 235 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 46/234 (19%), Positives = 93/234 (39%), Gaps = 23/234 (9%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 + ++D ++++ DG + + R D++ ++ + G + Sbjct: 7 LFVEDDDVIREATTLALERDGFVVTAMPDGLSGLESFRADRPDIALLDVMV--PGMDGVS 64 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R IR S VP+I +S + ++G DD V KP ++AR+ A+ RR + Sbjct: 65 LCRRIRDESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGSVLVARIRAVLRRFGHA 124 Query: 123 NNRAETGPIRV----------------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166 G ++G + G L E R+L + G Sbjct: 125 GGPNGGGGADDDADGERGVLTFGELEVDTEGMEVRKAGAPVALTPTEMRLLLEFSSAPGT 184 Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +++ ++ ++ +D + VV+ H+ +LR K+ G D +++ R GY + Sbjct: 185 VLSRDRLLERVWD-YDWGGDTRVVDVHVQRLRTKI----GQDRIETVRGFGYKL 233 >gi|126651421|ref|ZP_01723625.1| two-component response regulator [Bacillus sp. B14905] gi|126591674|gb|EAZ85770.1| two-component response regulator [Bacillus sp. B14905] Length = 233 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 44/220 (20%), Positives = 91/220 (41%), Gaps = 6/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 + IDD + D G +S++ D+ ++ Sbjct: 4 ILCIDDEPRMLDLLTLYLEP-GFQCRAMSSIQDALIYLEEEHVDLVLLDIM--MPEMDGF 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ IR VP+I ++ + + G DD + KP E+LAR+ A+ RR K+ Sbjct: 61 QVCEEIRKFWHVPIIMLTAKGEHSDIVKGLNIGADDYILKPFDEEELLARIHAVLRRTKI 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + +R+ + + Q E PL +E ++ + + K ++ + + ++G + Sbjct: 121 EDKVVVFEGLRLDKESFELYYQQEAIPLTPKEFSMMSLFLDYQNKVFSREHLINTVWG-Y 179 Query: 182 DEAVEENVVESHISKLRKKLRNKL--GFDPVDSKRFLGYS 219 ++E+ ++SH+ LR+KLR D + + +GY Sbjct: 180 HVSIEDRTIDSHVRNLREKLRKSGFPADDYLQTVWGIGYK 219 >gi|189424064|ref|YP_001951241.1| two component transcriptional regulator, winged helix family [Geobacter lovleyi SZ] gi|189420323|gb|ACD94721.1| two component transcriptional regulator, winged helix family [Geobacter lovleyi SZ] Length = 223 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 42/221 (19%), Positives = 89/221 (40%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D V ++G ++ + E D+ ++ L + L Sbjct: 3 ILVVEDEKKVAAFIKRGLEEEGYQVDAVHDGEEGVRQAQEQPYDLLILDVML--PSKDGL 60 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R +R +P++ ++ + + D+G DD + KP E+ ARV A+ RR+ Sbjct: 61 SVVRELRQAGTVMPVLMLTARDTTDDIVAGLDAGSDDYLTKPFAFAELSARVRALARRIG 120 Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 R+ R + L +E +LE+LM N G V + I ++ Sbjct: 121 RDRGAELVVADLRMDPLSRKVWRGDKEIELTIKEYGLLEFLMRNAGTVVTRNMIAEKVW- 179 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 N+++ +++ +RKK+ + + R GY++ Sbjct: 180 EHSFESFTNIIDVYVNYVRKKVDKGFDRKLIHTVRGQGYTL 220 >gi|219847488|ref|YP_002461921.1| winged helix family two component transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219541747|gb|ACL23485.1| two component transcriptional regulator, winged helix family [Chloroflexus aggregans DSM 9485] Length = 226 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 41/221 (18%), Positives = 83/221 (37%), Gaps = 2/221 (0%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++++D + + ++ +++ + E + DV+ I+ L G G + Sbjct: 3 ILIVEDDKRLARLIERVLREERHTVDVAHDGESGLDMLLQGVYDVAVIDWMLPGRDGPSL 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 R R + + L+ + + V R Sbjct: 63 CRAARAARLPTALLLLTARGQIEDKMLGFESGADDYLVKPFAFEELLARVRALGRRFNPN 122 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + N+ G I + L E R+LEYLM N G+ + + QI ++ Sbjct: 123 LGNDELRIGTIVLDLRSYTARRGERRLDLTPTEWRLLEYLMRNAGQTLTRQQILDYVWS- 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 F+ V+ +V+ ++S LR+KL DP+ + R +GY ++ Sbjct: 182 FEHDVQPQMVDVYVSYLRRKLNAPGEADPIVTVRGIGYRLE 222 >gi|77461417|ref|YP_350924.1| DNA-binding response regulator CreB [Pseudomonas fluorescens Pf0-1] gi|77385420|gb|ABA76933.1| two-component system, response regulator [Pseudomonas fluorescens Pf0-1] Length = 226 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 53/219 (24%), Positives = 98/219 (44%), Gaps = 5/219 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A + D I +G + + Q D+ ++ L Sbjct: 4 ILIVEDEAAIADTLIFALQGEGFTTTWLSLGAAALEHQRQTPADLIILDIGL--PDISGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E + +R S+VP++ +S + + + G DD V KP RE+ ARV AI +R+ Sbjct: 62 ETCKQLRRFSEVPVLFLSARNAEIDRVVGLEIGADDYVVKPFSPREVAARVRAILKRMAP 121 Query: 122 SNNRAETGP-IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + R+ + +G+ L R E R+L+ L+ + ++ Q+ A+ G+ Sbjct: 122 RPVIEASSALFRIDPERVQISYRGQPLSLTRHEFRLLQCLLEQPERVFSREQLLDAL-GV 180 Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218 +A E ++SHI +R KLR + +P+ + R LGY Sbjct: 181 AADAGYERSIDSHIKSVRAKLRLVRAEAEPIQTHRGLGY 219 >gi|332358799|gb|EGJ36622.1| DNA-binding response regulator [Streptococcus sanguinis SK355] Length = 249 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 40/220 (18%), Positives = 85/220 (38%), Gaps = 6/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D +++ + G + + + ++ L Sbjct: 25 ILLVEDDPVIRQMIKKMLEQWGFQVVAVEDFMDVLTIFVREEPHLVLMDIGLPL--FNGY 82 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 + IR S VP++ +S + + G DD V KP + LA+V Sbjct: 83 HWCQEIRKISTVPIMFLSSRDQSMDIVMAINMGADDYVTKPFDNNVFLAKVQGLLRRSYE 142 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + E + + D G+V L + E +IL L + VA+ + ++ Sbjct: 143 FGNDQSLLEHQGVILNLKSTDLVFDGKVVTLTKNEFQILRVLFEHSDGIVARDDLMKELW 202 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 D +++N + ++++LRKKL + +++K+ +GY Sbjct: 203 -NSDFFIDDNTLSVNVARLRKKLEEHGLKNFIETKKGIGY 241 >gi|330959009|gb|EGH59269.1| KDP operon transcriptional regulatory protein kdpE [Pseudomonas syringae pv. maculicola str. ES4326] Length = 230 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 41/223 (18%), Positives = 85/223 (38%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD ++ G + + + + D+ ++ L Sbjct: 7 ILVIDDEPQIRKFLRISLVSQGYKVLEAATGAEGLTQAALNKPDLLVLDLGL--PDMDGQ 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 ++ R S VP++ +S S + D+G +D V KP +E LAR+ Sbjct: 65 QVLSEFREWSAVPVLVLSVRASEAQKVQALDAGANDYVTKPFGIQEFLARIRALLRQVSG 124 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + GP+ V R + + L R+E +L L + G+ + + Q+ I+ Sbjct: 125 SDKPESALRFGPLIVDLAYRRVLLDEQEVALTRKEYAVLAQLARHPGRVITQQQLLKDIW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 G + + + + LR+KL + + ++ +GY + Sbjct: 185 GPTHTE-DSHYLRIVVGHLRQKLGDDPTAPRFIITEPGIGYRL 226 >gi|291458570|ref|ZP_06597960.1| DNA-binding response regulator ResD [Oribacterium sp. oral taxon 078 str. F0262] gi|291419103|gb|EFE92822.1| DNA-binding response regulator ResD [Oribacterium sp. oral taxon 078 str. F0262] Length = 233 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 49/228 (21%), Positives = 93/228 (40%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G S++ + + L + +ED + + L+ G+ Sbjct: 7 ILIVEDEEAIAELERDYLELSGFSVDLESDG--GKGLARALKEDYALLILDLMLPGKDGF 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ +R +P+I +S + G DD + KP E++ARV A R + Sbjct: 65 EICGEVRERKDIPIILVSARKDDIDKIRGLGLGADDYMTKPFSASELVARVKAHLARYER 124 Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 E I++ S R V G+ P RE +L +L ++ +K ++F Sbjct: 125 LLGSSRTEIPILEIRGIKIDSTARRVFVNGKEVPFTAREFDLLYFLASHPNHVYSKEELF 184 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR--NKLGFDPVDSKRFLGYSI 220 I+ D + V HI KLR+K+ N +++ +GY Sbjct: 185 KEIW-KMDSVGDIATVTVHIKKLREKIEIDNLSKPQYIETIWGVGYRF 231 >gi|331082889|ref|ZP_08332010.1| hypothetical protein HMPREF0992_00934 [Lachnospiraceae bacterium 6_1_63FAA] gi|330400030|gb|EGG79683.1| hypothetical protein HMPREF0992_00934 [Lachnospiraceae bacterium 6_1_63FAA] Length = 226 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 91/224 (40%), Gaps = 8/224 (3%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEK 59 M L++D +++ + G+ EGF D+ ++ L G + Sbjct: 1 MIYLVEDDESIRELLVYTLNGQGLVAEGFAYPSDFWHAMEKKIPDLVLLDIMLPEEDGLE 60 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAI 115 +L+ R + +P+ ++ S + D G DD + KP E+++RV Sbjct: 61 ILQKLRKKKETKNIPIAMLTAKGSEYDVVKGLDGGADDYIPKPFRMMELVSRVKALLRRG 120 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + G + V +V+GE L +E +L ++N G ++ Q+ Sbjct: 121 GQEQPQDDEEYVLGELYVSKKRHLVKVKGEEVTLTMKEFELLLLFLSNPGIVFSRAQLLD 180 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 I+G + E V+ HI LR+KL+ +++ R +GY Sbjct: 181 KIWG-YQFDGESRTVDVHIRTLRQKLKEAG--RYIETVRGIGYK 221 >gi|320532288|ref|ZP_08033144.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 171 str. F0337] gi|320135495|gb|EFW27587.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 171 str. F0337] Length = 249 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 44/230 (19%), Positives = 85/230 (36%), Gaps = 14/230 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++D + G + D+ ++ L Sbjct: 17 LLVVDDEPNIRDLLASSLRFAGFEVSIAGDGNGALKTVEKTSPDLVVLDVML--PDMDGF 74 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI----HHREILARVAAIY 116 + R +R P++ ++ + + G DD V KP I A + + Sbjct: 75 TVARRLRERDVTTPILFLTARDDMADKVQGLTVGGDDYVTKPFGLEEVIARIRAILRRTH 134 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + + D + L E ++L YLM N G+ V+K QI Sbjct: 135 AIENQDDGVVRVADLILDEDAHEVYRAEVEVDLSPTEFKLLRYLMLNAGRVVSKAQILDH 194 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFD------PVDSKRFLGYSI 220 ++ +D + +VES+IS LR+K+ G D + ++R +GY + Sbjct: 195 VW-EYDWNGDAAIVESYISYLRRKVDQIQGADGQPVTPLIQTRRGVGYML 243 >gi|319951282|ref|ZP_08025117.1| DNA-binding response regulator PhoP [Dietzia cinnamea P4] gi|319435055|gb|EFV90340.1| DNA-binding response regulator PhoP [Dietzia cinnamea P4] Length = 225 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 46/224 (20%), Positives = 90/224 (40%), Gaps = 10/224 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + G + + + R D ++ + Sbjct: 2 LVVDDEENIVELLSVSLKFQGFEVATARTGAEAIDKARTFRPDAVILDVM--MPVMDGFD 59 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 + +RA P++ ++ +++ + G DD V KP E++AR+ I RR Sbjct: 60 AVKRLRADGCDAPVLFLTARDAVEDRVAGLTLGADDYVTKPFSLEEVVARLRTILRRTGT 119 Query: 120 ---KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + R + + D + G L E +L YLM N G ++K +I Sbjct: 120 LSAAERSARLTFADLELDEDSHEVYKAGRPVALSPTEFTLLRYLMLNAGTVLSKARILDH 179 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +D + VVES++S LRKK+ + + + R +GY + Sbjct: 180 VWD-YDFGGDGGVVESYVSYLRKKI-DTAEPRLIHTIRGVGYVL 221 >gi|298292432|ref|YP_003694371.1| two component transcriptional regulator [Starkeya novella DSM 506] gi|296928943|gb|ADH89752.1| two component transcriptional regulator, winged helix family [Starkeya novella DSM 506] Length = 248 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 48/224 (21%), Positives = 88/224 (39%), Gaps = 12/224 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++D + G + S + D+ ++ GE Sbjct: 28 LLIVDDDRRIRDLLSRFLTEHGYRVTTAESAADARARLAGLTFDLLILDVM--MPGESGF 85 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL R +R S VP++ ++ ++ + G DD + KP RE+L R+ I +R Sbjct: 86 ELARAVREGSGVPIMMLTARSETGDRIEGLEIGADDYLAKPFEPRELLLRIGNIIKRAVP 145 Query: 122 SNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + GP + GE+ L RER +L L G+ V + + Sbjct: 146 PPAQAIETVRFGPFMFHLARGELTRDGELVRLTDRERDMLRVLGEKPGETVPRQALV--- 202 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 A + V+ +++LR+K+ + V + R LGY + Sbjct: 203 --APGVAAGDRAVDVQVNRLRRKIERDPANPAYVQTVRGLGYRL 244 >gi|83945607|ref|ZP_00957953.1| two-component transcriptional regulator, winged helix family protein [Oceanicaulis alexandrii HTCC2633] gi|83850973|gb|EAP88832.1| two-component transcriptional regulator, winged helix family protein [Oceanicaulis alexandrii HTCC2633] Length = 223 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 47/222 (21%), Positives = 93/222 (41%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D V + + G ++ + E + DV ++ + G + Sbjct: 3 ILIVEDDREVAGNIAKMLRESGHVVDMAHDGEDGLAMARDGAFDVLIVDRMMPRRDGLSM 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA--AIYRR 118 + + R + P + +S + + +G DD + KP E+ ARV A R Sbjct: 63 ISILRE--EGDKTPALVLSALGEVDDRVAGLTAGGDDYLVKPYAPSELKARVDALARRRD 120 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + R + G + + R + E L RE R+LE+LM + G+ V +T + ++ Sbjct: 121 PEALKTRLQVGDLEMDLLARTVKRGEEAIQLQPREFRLLEFLMRHAGQVVTRTMLLEKVW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + NV++ HIS+LR K+ + + R GY + Sbjct: 181 D-YHFDPQTNVIDVHISRLRSKIDKPFDTSMLHTVRGAGYRL 221 >gi|327439015|dbj|BAK15380.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Solibacillus silvestris StLB046] Length = 232 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 42/231 (18%), Positives = 90/231 (38%), Gaps = 12/231 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++ G + S E L + DV ++ L G Sbjct: 4 ILVVEDELSIRSFVSLSLRKKGYEVMEAESGEQALELFRNRNFDVVLLDLML--PGIDGF 61 Query: 62 ELPRIIRAHSQVP-LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + + IR +Q +I I+ + ++ G DD + KP +E+ R+ ++ RR+ Sbjct: 62 TVCQEIRKVNQKVGIIMITAKTQEKDKIEGLVIGADDYLCKPFSLQELEVRIFSLMRRIN 121 Query: 121 VSNNRAETG-------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 V + A ++ E+ L E +L +LM + + ++ Sbjct: 122 VGDEAASKMTDLLISGNFKMDLKNNKFYSSDEIVKLTPTEFSLLHFLMEHPNDLFTRDEL 181 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223 A++G + E VV+ +I ++R+K+ + + ++ GY N Sbjct: 182 LDAVWGE-NYVGELKVVDVNIRRIRQKIEKDPSSPMYLCTEWGRGYLWKVN 231 >gi|314934421|ref|ZP_07841780.1| DNA-binding response regulator [Staphylococcus caprae C87] gi|313652351|gb|EFS16114.1| DNA-binding response regulator [Staphylococcus caprae C87] Length = 225 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 48/220 (21%), Positives = 92/220 (41%), Gaps = 4/220 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + D + ++ F S E D++ ++ G E Sbjct: 6 LVVDDDRKILDYVKSHLINEHFETHAFLSGEEALHFLEKENVDIAI--VGIMMNGINGFE 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L + ++ +P+I ++ +L F SG DD V KP +E+L R+ A+ R +++ Sbjct: 64 LCKTLKEDYDIPVIMLTARDALSDKERAFLSGTDDYVTKPFEVKELLFRIKAVLRSYQIN 123 Query: 123 NNRAETGPIRVFSDGRDPE-VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + V + LP +E ++L L++N + I I+G F Sbjct: 124 AESELKLGNLTLNQPYMEISVDAKTINLPNKEFQLLFLLVSNPKHIFTRNDIIEKIWG-F 182 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D ++ V+ HI +LR+KL + + R GY ++ Sbjct: 183 DYEGDDRTVDVHIKRLRQKLSRLGASISIHTVRGQGYKVN 222 >gi|225027390|ref|ZP_03716582.1| hypothetical protein EUBHAL_01646 [Eubacterium hallii DSM 3353] gi|224955287|gb|EEG36496.1| hypothetical protein EUBHAL_01646 [Eubacterium hallii DSM 3353] Length = 236 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 43/220 (19%), Positives = 95/220 (43%), Gaps = 6/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + + +G ++ + + D+ + Sbjct: 17 ILIVEDDKELSQLFQKVLEKNGYQVKSASDGAQALEVLDKEYIDLIISDIM--MPVMDGY 74 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-ARVAAIYRRL 119 EL +R A Q+P++ I+ S F SG DD + KP++ E++ A + R Sbjct: 75 ELVSELRSAGYQIPVLMITAKGSFDDMRQGFLSGSDDYMVKPVNVNEMVLRVGALLRRAQ 134 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++ ++ G D E LP++E +L L A+ G+ K Q+ ++G Sbjct: 135 ILNEHKIVIGSTEFDYDAMTVTTDKESLVLPKKEFLLLYKLAASPGRTFTKQQLMDEVWG 194 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 ++ + + +E HI ++R++L++ F+ + + R +GY Sbjct: 195 -YETEADPHTIEVHIGRIRERLKDNPDFE-IVTMRGIGYK 232 >gi|330963138|gb|EGH63398.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. actinidiae str. M302091] Length = 225 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 45/220 (20%), Positives = 85/220 (38%), Gaps = 4/220 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++I+D D + G +++ L + ++ L G Sbjct: 4 LIIEDEEKTADYLRRGLTEQGYTVDVARDGIEGLHLALENDHAIVILDVML--PGLDGFG 61 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLKV 121 + R +RA Q P+I ++ + + G DD + KP E++AR+ A R Sbjct: 62 VLRALRARKQTPVIMLTAREQVDDRIRGLREGADDYLGKPFSFLELVARLQALTRRSGGH 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + + R G L +E +L L +G ++KT I ++ + Sbjct: 122 EPVQITIADLWIDLISRKATRAGARLDLTAKEFSLLSVLARRQGDILSKTSIAEMVWDI- 180 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + NVVE I +LR KL + + R +GY ++ Sbjct: 181 NFDSDTNVVEVAIKRLRAKLDGPHEHKLLHTIRGMGYVLE 220 >gi|331268624|ref|YP_004395116.1| DNA-binding response regulator [Clostridium botulinum BKT015925] gi|329125174|gb|AEB75119.1| DNA-binding response regulator [Clostridium botulinum BKT015925] Length = 227 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 47/230 (20%), Positives = 91/230 (39%), Gaps = 14/230 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L+DD + + + + + L S D+ ++ L Sbjct: 3 ILLVDDEESILNLVKMNLMFENYDVVTAECGKDAIKLFQSELPDLIVLDLML--PDMDGF 60 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118 ++ I+ +S++P+I +S + L G DD + KP RE++ R+ AI RR Sbjct: 61 QVIHEIQNINSEIPIIVLSAKNQINDRLLGLQLGADDYITKPFDSRELILRIRAISRRIN 120 Query: 119 ------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 K + E G I++ R + + E IL ++ N K + + Sbjct: 121 KVKLTTNKETKKIIEKGFIKIMVLERRVFIDLKEVNFTHIEFEILVLMVQNAYKVFTREE 180 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + I+G +D + V+ HI ++RKKL + + + +GY + Sbjct: 181 LLDKIWG-YDFSGNTRAVDIHIKRIRKKL--LNHEEAIKTIYGVGYRFEV 227 >gi|319941522|ref|ZP_08015849.1| winged helix family Two component transcriptional regulator [Sutterella wadsworthensis 3_1_45B] gi|319804996|gb|EFW01835.1| winged helix family Two component transcriptional regulator [Sutterella wadsworthensis 3_1_45B] Length = 256 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 49/241 (20%), Positives = 98/241 (40%), Gaps = 23/241 (9%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEK 59 + ++++D +++ + + +G S+ ++ R D+ ++ L GE+ Sbjct: 5 LLLIVEDELAIQELIVFVCEAEGFRTTRAGSIAEARSALAAERPDLILLDRMLPDRPGEE 64 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR- 118 L R + VP+I ++ + + D+G DD V KP RE+ ARV A+ RR Sbjct: 65 WLRELRSDAKTADVPVIILTARGNESDRVAGLDAGADDYVVKPFLPRELTARVRAVLRRR 124 Query: 119 -------------------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEY 159 GP+++ + G+ L +E ++L Sbjct: 125 GAAVIAGRLSPMPSEETASTADEERVIVCGPLKLNEARFEATAAGKPLKLSAKEFKLLSL 184 Query: 160 LMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 A G+ ++ + A++ V+E V+ H+ +LRK L D +++ R +GY Sbjct: 185 FAAKPGRVFSRANLLDAVW--QSAFVDERTVDVHMLRLRKALAGSAAEDMIETVRGVGYR 242 Query: 220 I 220 Sbjct: 243 F 243 >gi|298241305|ref|ZP_06965112.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297554359|gb|EFH88223.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 261 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 47/227 (20%), Positives = 87/227 (38%), Gaps = 10/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + D ++ L + D+ ++ L G Sbjct: 23 ILLVEDEKSILQFVRDALEDADYTVLSAEDGLNALKLAREKQIDLVLLDIGL--PGLDGF 80 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R++R +P++ +S S + F G DD + KP RE+LARV A RR + Sbjct: 81 SVCRVLREDLHIPILIVSARQSDADKVQGFGVGADDYIMKPFSIRELLARVQAHLRREQR 140 Query: 122 SNNRAETGP------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + + + L R+E +L L + G+ A+ IF Sbjct: 141 YRQPKRRMALLKSGGLSIDMERHEVSSGTTSLALSRKEFEVLCLLARHAGQVFARDVIFD 200 Query: 176 AIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221 ++ E+ E V HI ++R KL R + + + +GY + Sbjct: 201 RVWQDDTESYLE-TVTEHIKRIRSKLARVDAHTEYIKTIWGVGYKWE 246 >gi|315506484|ref|YP_004085371.1| two component transcriptional regulator, winged helix family [Micromonospora sp. L5] gi|315413103|gb|ADU11220.1| two component transcriptional regulator, winged helix family [Micromonospora sp. L5] Length = 238 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 44/225 (19%), Positives = 93/225 (41%), Gaps = 10/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD V D DG + D+ ++ G +E Sbjct: 12 LVVDDDRTVSDVVRRYLEQDGCRVRLSFDGPDALAAAEEEPPDLVVLDLM--MPGLDGIE 69 Query: 63 LP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R+ R +P++ ++ + + G DD V KP RE++ R+ ++ RR Sbjct: 70 VCRRLRRRLPGLPVVMLTALGDEADRVAGLEVGADDYVTKPFSPRELVLRIRSVLRRAAP 129 Query: 122 SNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + G + +D R E G+ L RE +L +L+AN G+ ++ ++ + Sbjct: 130 QDRGPTGVLRDGDLTADTDRRVAERGGQPLSLTVREFDLLAFLLANPGRAWSRAELLDRV 189 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221 +G +++ V H+ +LR+K+ ++ + + +GY + Sbjct: 190 WGWR--FGDQSTVTVHVRRLREKIEDRPAQPRRIVTVWGVGYRYE 232 >gi|291286929|ref|YP_003503745.1| two component transcriptional regulator, winged helix family [Denitrovibrio acetiphilus DSM 12809] gi|290884089|gb|ADD67789.1| two component transcriptional regulator, winged helix family [Denitrovibrio acetiphilus DSM 12809] Length = 236 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 40/228 (17%), Positives = 88/228 (38%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + L +G ++ ++ L D+ ++ L Sbjct: 9 ILVVDDDPDILEVLRLLLDLEGYNVITASNGITGLALARENTPDMIVLDLNL--PDINGQ 66 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARVA 113 ++ +IIR+ +P++ +S ++ + + G DD + KP + E + Sbjct: 67 QICKIIRSELDIPIMILSARDNVSDKVVCLEYGADDYMTKPFENIELIARVKAILRRSEK 126 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + + + + R ++ E L +E IL Y + G +++ I Sbjct: 127 NNTSQEAGTGDVLIFHHMTIDKASRQVFIKDEKVALTPKEYEILLYFVGKTGHVLSRDDI 186 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + I+G ++ HI LR+K+ N D V + +GY I Sbjct: 187 VNDIWGKNSIYSWSRSLDVHIKNLRQKIEINPKNPDIVKTVSGVGYKI 234 >gi|219856745|ref|YP_002473867.1| hypothetical protein CKR_3402 [Clostridium kluyveri NBRC 12016] gi|219570469|dbj|BAH08453.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 233 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 43/228 (18%), Positives = 85/228 (37%), Gaps = 10/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD + + + + S + + ++ G Sbjct: 7 ILVIDDDKELCALIRQSVAVESIDADHCYSGADGLAMLQKNDYQLILLDVM--MPGMDGF 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL------ARVAAI 115 + IR S VP++ ++ + + SG DD + KP E++ R Sbjct: 65 QTMEKIRQTSSVPILMLTSKNDSTSKVRGLRSGADDYLTKPFDMDELIARVVSLIRRYTR 124 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + + + D R Q F LP +E +L + N+GK + K QI+ Sbjct: 125 FNTTGDHSQPLTYQGLTIDLDSRSVTTQNGTFELPPKEFDLLLFCAKNQGKILTKQQIYE 184 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDW 222 ++G + N + + IS+LRKK+ G + + + +GY + Sbjct: 185 EVWGEAYVYDDSN-IMAIISRLRKKIEPDSGAPYYIQTVKGIGYRFNK 231 >gi|66045291|ref|YP_235132.1| response regulator receiver:transcriptional regulatory protein, C-terminal [Pseudomonas syringae pv. syringae B728a] gi|63255998|gb|AAY37094.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Pseudomonas syringae pv. syringae B728a] Length = 230 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 44/223 (19%), Positives = 86/223 (38%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD ++ G + + + + D+ ++ L Sbjct: 7 ILVIDDEPQIRKFLRISLASQGYKVLEAATGAEGLTQAALNKPDLLVLDLGL--PDMDGQ 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 ++ R S VP++ +S S + D+G +D V KP +E LARV Sbjct: 65 QVLSEFREWSAVPVLVLSVRASEAQKVQALDAGANDYVTKPFGIQEFLARVRALLRQASG 124 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + E GP+ V R + G L R+E +L L + G+ + + Q+ I+ Sbjct: 125 SDKPESALEFGPLTVDLAYRRVLLDGLEVALTRKEYAVLAQLARHPGRVITQQQLLKDIW 184 Query: 179 GLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220 G + + + + LR+KL + + ++ +GY + Sbjct: 185 GPTHTE-DSHYLRIVVGHLRQKLADDPTAPRFILTEPGIGYRL 226 >gi|322386034|ref|ZP_08059674.1| DNA-binding response regulator [Streptococcus cristatus ATCC 51100] gi|321270017|gb|EFX52937.1| DNA-binding response regulator [Streptococcus cristatus ATCC 51100] Length = 228 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 42/220 (19%), Positives = 87/220 (39%), Gaps = 6/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D A+++ + G + + + ++ L Sbjct: 4 ILLVEDDAVIRQMIKKMLEQWGYQVVAIEDFMQVLTIFVKEEPQLVLMDIGLPL--FNGY 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 + IR S VP++ +S + + G DD V KP + LA+V Sbjct: 62 HWCQEIRKISTVPIMFLSSRDQSMDIVMAINMGADDYVTKPFDNNVFLAKVQGLLRRSYE 121 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + E + + D +GE+ L + E +IL L + G VA+ + ++ Sbjct: 122 FGTDQSLLEYQGVILNLKSMDLVYEGELVTLTKNEFQILRVLFEHSGSIVARDDLMKELW 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 D +++N + ++++LRKKL +++K+ +GY Sbjct: 182 -NSDFFIDDNTLSVNVARLRKKLEEHGLKHFIETKKGIGY 220 >gi|320160793|ref|YP_004174017.1| OmpR family two-component response regulator [Anaerolinea thermophila UNI-1] gi|319994646|dbj|BAJ63417.1| OmpR family two-component response regulator [Anaerolinea thermophila UNI-1] Length = 239 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 43/223 (19%), Positives = 87/223 (39%), Gaps = 9/223 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + G + ++ E L SS + D+ ++ Sbjct: 6 ILVVDDEPRYQHLLRVNLEAAGYLVSTASNGEEALELISSRQPDLVILDVM--MPHLDGF 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116 IR S VP+I ++ Q + + G DD V KP E++AR A Sbjct: 64 STCERIRQFSSVPIIMLTAKGEEQDRVKGLNVGADDYVVKPFSATELIARVRAVLRRAQT 123 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 N G +++ + + L E R+L N G+ ++ ++ +A Sbjct: 124 AEAVTQNRYFTHGNLKIDFARAEVWKDDKPVFLSATEYRLLIQFAHNMGRVLSPEELLTA 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGY 218 ++G + ++ ++ I++LR+KL + + ++ LGY Sbjct: 184 VWGTQYKE-DKEILWVSIARLRQKLEDNPHNPVHIVTRSGLGY 225 >gi|227543824|ref|ZP_03973873.1| response regulator [Lactobacillus reuteri CF48-3A] gi|300908892|ref|ZP_07126355.1| response regulator [Lactobacillus reuteri SD2112] gi|227186201|gb|EEI66272.1| response regulator [Lactobacillus reuteri CF48-3A] gi|300894299|gb|EFK87657.1| response regulator [Lactobacillus reuteri SD2112] Length = 237 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 41/227 (18%), Positives = 89/227 (39%), Gaps = 9/227 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + ++G + ++ D+ I L+ + Sbjct: 11 ILVVDDDKEIVQLLEIYIRNEGYEPISAYDGKEALTKLNTN-PDIGLIILDLMMPEIDGM 69 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + +R S +P++ +S + + +G DD V KP + E++ARV ++ RR + Sbjct: 70 DVIKRVRKDSDIPILVLSAKTADMDKIQGLITGADDYVTKPFNPLEVMARVKSLLRRSQG 129 Query: 122 SNNRAETGPIRVFSDGRDPEVQG------EVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + V + + +V L E IL L ++ + + IF Sbjct: 130 EVTNDQPDILNVGPLLINKDSHEVKTIKGDVIQLTALEFGILYLLASHPNRVFSADDIFE 189 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 ++ + V V H+S LR K+ G + + +GY ++ Sbjct: 190 RVW-QQESVVSAKTVMVHVSHLRDKIEEATNGEKVIQTVWGVGYKVE 235 >gi|221308070|ref|ZP_03589917.1| hypothetical protein Bsubs1_01408 [Bacillus subtilis subsp. subtilis str. 168] gi|221312393|ref|ZP_03594198.1| hypothetical protein BsubsN3_01411 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221317326|ref|ZP_03598620.1| hypothetical protein BsubsJ_01413 [Bacillus subtilis subsp. subtilis str. JH642] gi|221321590|ref|ZP_03602884.1| hypothetical protein BsubsS_01434 [Bacillus subtilis subsp. subtilis str. SMY] gi|255767066|ref|NP_388137.2| two-component response regulator YcbM [Bacillus subtilis subsp. subtilis str. 168] gi|238054356|sp|P42244|YCBL_BACSU RecName: Full=Uncharacterized transcriptional regulatory protein ycbL gi|225184693|emb|CAB12049.2| two-component response regulator [YcbM] [Bacillus subtilis subsp. subtilis str. 168] Length = 226 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 40/226 (17%), Positives = 81/226 (35%), Gaps = 11/226 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L++D + + +G + E L D+ ++ L ++ Sbjct: 1 MLVEDDHSISEMVDHYLTKEGFGIVHAFDGEEGIRLFQQGSYDLVLLDIML--PKLNGMD 58 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI-------LARVAAI 115 +IIR S +P++ IS G DD + KP E+ + R Sbjct: 59 FLKIIREKSNIPVLMISAKDGDVDKALGLGFGADDYIAKPFSMIELTARVKAAIRRATQY 118 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 N + + D GE L E ++L +N K K QI+ Sbjct: 119 SAEEPAVNKVIRIHQLAIDIDNVSVLKNGEPLQLTSTEWQLLCLFASNPKKVFTKEQIYR 178 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 +++ ++N++ H+ +LR+K+ + + + +GY + Sbjct: 179 SVWNEEYFD-DQNIINVHMRRLREKIEDDPSSPQYIKTLWGIGYKL 223 >gi|153940472|ref|YP_001390134.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|152936368|gb|ABS41866.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|295318224|gb|ADF98601.1| DNA-binding response regulator [Clostridium botulinum F str. 230613] Length = 230 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 48/226 (21%), Positives = 87/226 (38%), Gaps = 9/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + + S D+ ++ L G Sbjct: 7 ILVVEDNNDINKLLCDMLRQSEYITKSAYSGTEALIYLKEYDWDMVLLDLML--PGMDGK 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL IR +P+I IS ++ G DD + KP E+ AR+ + RR K Sbjct: 65 ELLSNIRKSKPMPVIIISAKEEKDIKIETLRMGADDYITKPFDIDEVSARIDSHLRRYKE 124 Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 +N ++ D R+ + + L RE IL+ LM K K+ +F + Sbjct: 125 FSNITPQNLLKYKEISLNKDTREVFIHNKQIMLTTREFDILQLLMGYPKKVFTKSNLFES 184 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 ++ + ++N + HIS LR KL + + + +GY +D Sbjct: 185 VWS-SEYLCDDNTINVHISNLRNKLSKAGTENEYIQTIWGIGYKLD 229 >gi|313888528|ref|ZP_07822195.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845557|gb|EFR32951.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Peptoniphilus harei ACS-146-V-Sch2b] Length = 223 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 43/222 (19%), Positives = 90/222 (40%), Gaps = 7/222 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ +G + DV ++ Sbjct: 4 ILVVDDEKSIREVIRTYAEFEGHEVVEAVDGLDAIDKVKEEDFDVIVMDIM--MPRLDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + I+ +P++ +S L F+ G+DD V KP +E++AR+ I R Sbjct: 62 SSYKEIKKIKNIPVLMLSARSEEYDKLFGFEIGIDDYVTKPFSPKELMARLNVIVNRNNK 121 Query: 122 SNNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++ DGR V E+ L +E +L Y++ N+ +++ ++ + ++G Sbjct: 122 VEENKTMEFEGLKIDLDGRVVFVDDEMIDLTPKEYDLLVYMVKNKNIALSRDKLLNQVWG 181 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +D E+ V++HI LR ++ + + R +GY D Sbjct: 182 -YDFYGEDRTVDTHIKMLRNSIKEY--RKFIITVRGVGYKFD 220 >gi|326778918|ref|ZP_08238183.1| two component transcriptional regulator, winged helix family [Streptomyces cf. griseus XylebKG-1] gi|326659251|gb|EGE44097.1| two component transcriptional regulator, winged helix family [Streptomyces cf. griseus XylebKG-1] Length = 267 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 44/223 (19%), Positives = 87/223 (39%), Gaps = 6/223 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L +D A + + +G +E D+ ++ L G LE Sbjct: 47 LLAEDDASISEPLARALRREGYEVEVRQDGPTALDAGLQGGIDLVVLDLGL--PGMDGLE 104 Query: 63 LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-HREILARVAAIYRRLK 120 + R +RA +P++ ++ T+ D+G DD V KP + A + R Sbjct: 105 VARRLRAGGHTIPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAS 164 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + T +R+ + + E L +E +L L+ + G+ V + Q+ ++ Sbjct: 165 EPVAQPATHGVRIDVESHRAWMGEEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 224 Query: 181 FDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222 + ++ HIS LRKKL + + + R +G+ + Sbjct: 225 TWWS-STKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEK 266 >gi|260185480|ref|ZP_05762954.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis CPHL_A] gi|289446155|ref|ZP_06435899.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis CPHL_A] gi|289419113|gb|EFD16314.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis CPHL_A] Length = 253 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 39/221 (17%), Positives = 81/221 (36%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + ++G +++ S D ++ L G Sbjct: 25 ILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDSGDYDAVVLDVML--PGIDGF 82 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ +R P++ ++ ++ + D G DD + KP + E+ AR+ A+ RR Sbjct: 83 EVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRGP 142 Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + R+ L +E +LE L+ G + Q+ + Sbjct: 143 IPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWD 202 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 N+V+ +I LR K+ G +++ R GY + Sbjct: 203 AA-YEARSNIVDVYIRYLRDKIDRPFGVTSLETIRGAGYRL 242 >gi|228907578|ref|ZP_04071435.1| hypothetical protein bthur0013_17450 [Bacillus thuringiensis IBL 200] gi|228852070|gb|EEM96867.1| hypothetical protein bthur0013_17450 [Bacillus thuringiensis IBL 200] Length = 229 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 40/227 (17%), Positives = 86/227 (37%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D A++ + G +++ S E D+ ++ L G Sbjct: 4 ILIIEDEAIIAELEKDYLEVAGYTVDIDYSGEKGLQRVLLEDYDLLILDIML--PGIDGY 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + +R +P++ +S + G DD + KP E++ARV A R Sbjct: 62 EICKQVRLEKDIPILMVSAKQEEIDKIKGLGFGADDYIIKPFSPSEMVARVNAHLARYDR 121 Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + + R V G L +E +L + + + +K ++F Sbjct: 122 LTGKRELIKDEIRIRGLFIDKSARRVFVNGTEVMLTGKEFDLLTCMAEHPNQVFSKDRLF 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++G+ D + V H+ +R+K+ + + + +GY Sbjct: 182 ETVWGM-DVIGDAATVAVHVKNIRQKIELDPFDKSYIGTIWGVGYRF 227 >gi|261408735|ref|YP_003244976.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261285198|gb|ACX67169.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] Length = 228 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 44/224 (19%), Positives = 88/224 (39%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L+DD V + +G + ++ A+ + ++ L + Sbjct: 5 LLLVDDERKVIEFMEPFLRQEGFHIITASTGTEALAKAREAKPSLVVLDWML--PELSGI 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R S+V +I ++ L + G DD + KP RE+ AR+ ++ RR++ Sbjct: 63 EVCRELRKSSRVGIIMVTARIEETDKLIGLEVGADDYMTKPFSLRELAARIRSVLRRIEG 122 Query: 122 SNNRAETGPIRVFSDG---RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + E + PL E ++L L + G ++ Q+ A Sbjct: 123 ESVTEEMLKRGDLTISETQCRVWKHDREIPLTPTEFKLLLTLASRPGVVYSRLQLLQAA- 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 D +E ++HIS++RKK+ + + + GY + Sbjct: 182 MEDDIHNDERTADAHISRIRKKIEDDPAEPVFIKTVYGFGYRFE 225 >gi|183599417|ref|ZP_02960910.1| hypothetical protein PROSTU_02892 [Providencia stuartii ATCC 25827] gi|188021661|gb|EDU59701.1| hypothetical protein PROSTU_02892 [Providencia stuartii ATCC 25827] Length = 231 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 45/222 (20%), Positives = 89/222 (40%), Gaps = 5/222 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + G + + D+ ++ L G L Sbjct: 12 LVVEDEPKLGQLLYDYLQAAGYQPSILQRGDEVIDYVRQQQPDIILLDLML--PGMDGLT 69 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +R ++P+I ++ L + G DD + KP RE++ARV I RR + + Sbjct: 70 ICRELRKFCEIPIIMVTAKTEEIDRLLGLEIGADDYICKPFSPREVVARVKTILRRCQRA 129 Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + ++ P + + ++ L E R+L+++ N G ++ Q+ +Y Sbjct: 130 ASPDKSRPQLIIDENAFQVRYGEQLLELTPAEFRLLKFMSDNAGTVFSRDQLLDILYDDH 189 Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 V + ++SH+ LR+KL + S LGY D Sbjct: 190 -RIVTDRTIDSHVKNLRRKLELLDNEKTFIRSIYGLGYRWDE 230 >gi|118443185|ref|YP_877407.1| two-component response regulator [Clostridium novyi NT] gi|118133641|gb|ABK60685.1| two-component response regulator [Clostridium novyi NT] Length = 234 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 39/227 (17%), Positives = 83/227 (36%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + + + + S+ ++ + D+ ++ L Sbjct: 5 ILVIEDDVEIANIIQSHLTRENYSVNWSSTGKEGLEDFKKDTYDLIILDIML--PEIDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + IR S VP++ +S + G DD + KP E+ ARV +R K Sbjct: 63 TVCKNIRLLSNVPILILSAKKQEVDKVKGLKLGADDYITKPFSLIELEARVENNIKRYKG 122 Query: 122 SNNRAETGPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N + + I + + + + L +E +L L N K K +++ Sbjct: 123 YNKKTDDNSIWRYKNGLTIIKDEMKVLIDDKEIELTSKEFSLLVVLAQNEHKVFTKKELY 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220 ++ + N + H+ LR+KL++ + + GY Sbjct: 183 ENVWNQDNLEGN-NTITVHVKGLRQKLKDNVKNPKYIQTVWGTGYKF 228 >gi|194336101|ref|YP_002017895.1| two component transcriptional regulator, winged helix family [Pelodictyon phaeoclathratiforme BU-1] gi|194308578|gb|ACF43278.1| two component transcriptional regulator, winged helix family [Pelodictyon phaeoclathratiforme BU-1] Length = 227 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 38/218 (17%), Positives = 94/218 (43%), Gaps = 4/218 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + ++ +++ + + D+ ++ + + Sbjct: 3 LLIIEDEPGIAGFLKDGLEEEYFAVDIAYDGKSGLDMALINEYDLIIVDWMIPA--ISGI 60 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R IR VP++ ++ +L+ + D+G +D + KP E+LAR+ R Sbjct: 61 EVCRQIRKTGNAVPILFLTAKDTLEDVIFGLDAGANDYIKKPFEFEELLARIRVQLRNKN 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 +++ G + + L +E +LEYL+ N+ + +++I ++ + Sbjct: 121 RNDDSLNAGILNINPVTHQVFCASTEVTLTPKEFALLEYLVRNKDRVCTRSRIIEHVWDI 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + +V++ +I+ LR+KL + + + R +GY Sbjct: 181 H-FDSDTSVIDVYITFLRRKLEAAGCGNIIQTIRGVGY 217 >gi|330820065|ref|YP_004348927.1| Two component transcriptional regulator, winged helix family protein [Burkholderia gladioli BSR3] gi|327372060|gb|AEA63415.1| Two component transcriptional regulator, winged helix family protein [Burkholderia gladioli BSR3] Length = 243 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 51/228 (22%), Positives = 95/228 (41%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A + + D+ + + + D ++ L G L Sbjct: 7 ILIVEDDADIAEVLALHLRDERYEVVHCANGDDGLRRLEQGNWDALILDLML--PGVDGL 64 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R RA P+I IS S + + G DD + KP E++ARV A+ RR++ Sbjct: 65 EICRRARAMERYTPIIIISARSSEVHRILGLELGADDYLAKPFSMLELVARVKALLRRVE 124 Query: 121 VSNNRAETGPIRV-------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + RV R+ V G L RE +L + + GK ++T + Sbjct: 125 ALSRDTRSEAGRVDVGGLTLDPLTREAAVDGAAIDLTPREFDLLYHFARHPGKAFSRTDL 184 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 +A++G + E+ V +HI++LR K+ + + + GY + Sbjct: 185 LNAVWG-YQHEGYEHTVNTHINRLRAKIEADPAQPARILTVWGRGYKL 231 >gi|197302965|ref|ZP_03168015.1| hypothetical protein RUMLAC_01692 [Ruminococcus lactaris ATCC 29176] gi|197297960|gb|EDY32510.1| hypothetical protein RUMLAC_01692 [Ruminococcus lactaris ATCC 29176] Length = 238 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 39/228 (17%), Positives = 84/228 (36%), Gaps = 12/228 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D +++G G + + ++ ++ + Sbjct: 13 LVVEDDKEIREGVKIYLKSQGYEVYEAADGIEGLKVLEKEEIHLAIVDIM--MPRLDGIR 70 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + +R P+I +S + + G DD V KP E++ARV + RR + Sbjct: 71 MTMKLREKYDFPVIMLSAKSEEVDKVMGLNIGADDYVTKPFTPMELMARVNSQLRRYRKF 130 Query: 123 NNRAETGPIRV-------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 R D + V GE L E +IL L N G+ + +I+ Sbjct: 131 MERLAPRENIHVIGGLEINEDTVEVSVDGEPVRLTPIEYKILLLLAKNPGRVFSSEEIYE 190 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 ++ ++A+ + + H+ +R+K+ + + +GY I+ Sbjct: 191 RVW--QEKAINTDTIMVHVRNIREKIELDPKNPKYLKVVWGVGYKIEK 236 >gi|159898013|ref|YP_001544260.1| two component transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159891052|gb|ABX04132.1| two component transcriptional regulator, winged helix family [Herpetosiphon aurantiacus ATCC 23779] Length = 228 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 37/223 (16%), Positives = 76/223 (34%), Gaps = 6/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LIDD A ++ +G + ++ + + D+ ++ Sbjct: 5 ILLIDDEAKLRQVIRLSLEQEGYRVVEASNGREALYRARIEKPDLVVLDLM--MPEMNGT 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 E S P+I ++ + + G DD + KP + RE++AR+ + Sbjct: 63 EFLLAFSKESNTPVIMLTARVEDHDKIIGLELGADDYITKPFNMRELIARIRAVLRRTHK 122 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + G + + V + L R E IL M G ++ + + Sbjct: 123 PTLEPDLIRAGDLVLDRGSATVLVGEQQLSLTRSELEILATFMTAPGLIFSRLDLLDRLS 182 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 E ++ HI LR K+ +++ +GY Sbjct: 183 LGDAYEGYERSIDVHIRNLRTKIEPDSRQPRYIETVYGMGYRF 225 >gi|77456430|ref|YP_345935.1| two component heavy metal response transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77380433|gb|ABA71946.1| heavy metal sensing two-component sytem,response regulator [Pseudomonas fluorescens Pf0-1] Length = 226 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 42/221 (19%), Positives = 96/221 (43%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A + G+ G +++ + + D+ ++ L G Sbjct: 3 LLVVEDEAKTANFIAKGLGESGFAVDVALNGLDGRYFIEQQEYDLIILDVML--PGLNGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120 +L ++IR P++ ++ +++ + + G DD + KP E+LARV + R Sbjct: 61 QLLQLIRQRGATPVLFLTAKDAIEDRVRGLELGADDYLLKPFAFAELLARVRTLLRRGPL 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + R G+ L +E +L L + +G+ +++T I S ++ L Sbjct: 121 REAESYNIADLEIDVLRRRVSRGGQRIALTNKEFALLHLLASRQGEVLSRTLIASQVWNL 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + N+VE + +LR K+ + + + R +GY ++ Sbjct: 181 -NFDSDTNMVEVAVRRLRSKVDDPYMPKLIHTVRGVGYQLE 220 >gi|253682442|ref|ZP_04863239.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridium botulinum D str. 1873] gi|253562154|gb|EES91606.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridium botulinum D str. 1873] Length = 228 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 42/231 (18%), Positives = 84/231 (36%), Gaps = 15/231 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L+DD + + + + + L S D+ ++ L Sbjct: 3 ILLVDDEESILNLVRMNLMFENFDVVTAECGKDAIKLFQSELPDLIVLDLML--PDMDGF 60 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILAR 111 ++ I+ +S++P+I +S + L G DD + KP RE Sbjct: 61 QVIHEIQNINSEIPIIVLSAKNQINDKLLGLQLGADDYITKPFDSRELILRIRAISRRIN 120 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + K + E G I++ R + + E IL ++ N K + Sbjct: 121 KVKLTTNNKETKKIIEKGFIKIMLLERRVFIDLKEVNFTHIEFEILVLMVQNAYKVFTRE 180 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 ++ I+G +D + V+ HI ++RKKL + + + +GY + Sbjct: 181 ELLDKIWG-YDFSGNTRAVDIHIKRIRKKL--LNHEEAIKTIYGVGYRFEV 228 >gi|332760827|gb|EGJ91115.1| transcriptional activator protein irlR [Shigella flexneri 4343-70] gi|333007818|gb|EGK27294.1| transcriptional activator protein irlR [Shigella flexneri K-218] Length = 227 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 37/224 (16%), Positives = 99/224 (44%), Gaps = 6/224 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G ++ ++ L + D+ ++ L Sbjct: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIML--PDVNGW 60 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118 ++ R++R A+ +P++ ++ +++ + + G DD + KP E+LARV Sbjct: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + ++ + + V R + G L +E +LE+ + ++G+ + ++ I S ++ Sbjct: 121 AVIIESQFQVADLMVDLVSRKVTLSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + + + N ++ + +LR K+ N + + R +GY ++ Sbjct: 181 DM-NFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223 >gi|294630664|ref|ZP_06709224.1| DNA-binding response regulator [Streptomyces sp. e14] gi|292833997|gb|EFF92346.1| DNA-binding response regulator [Streptomyces sp. e14] Length = 233 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 46/231 (19%), Positives = 93/231 (40%), Gaps = 20/231 (8%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 + ++D ++++ DG ++ + R D++ ++ + G + Sbjct: 8 LFVEDDDVIREATQLALERDGFAVTAMPDGLSGLEAFRADRPDIALLDVMV--PGLDGVS 65 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R IR S VP+I +S + ++G DD V KP ++AR+ A+ RR + Sbjct: 66 LCRRIRDESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRRFGHA 125 Query: 123 NNRAETGPI-------------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 V +DG + G L E R+L + G ++ Sbjct: 126 GGARAAADSGEVDGGVLTFGDLEVDTDGMEVRRAGRPVALTPTEMRLLLEFSSAPGTVLS 185 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + ++ ++ + + VV+ H+ +LR K+ G D +++ R GY + Sbjct: 186 RDKLLERVWD-YGWGGDTRVVDVHVQRLRTKI----GQDRIETVRGFGYKL 231 >gi|56552218|ref|YP_163057.1| winged helix family two component transcriptional regulator [Zymomonas mobilis subsp. mobilis ZM4] gi|241761709|ref|ZP_04759796.1| two component transcriptional regulator, winged helix family [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|260752274|ref|YP_003225167.1| two component transcriptional regulator, winged helix family [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|56543792|gb|AAV89946.1| two component transcriptional regulator, winged helix family [Zymomonas mobilis subsp. mobilis ZM4] gi|241374017|gb|EER63550.1| two component transcriptional regulator, winged helix family [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|258551637|gb|ACV74583.1| two component transcriptional regulator, winged helix family [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 235 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 47/231 (20%), Positives = 83/231 (35%), Gaps = 15/231 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 L+DD + +G S+ ++ + + D+ ++ + Sbjct: 5 IALVDDDRNILASVSMTLQSEGFSVRVYSDGKTALNALLESPPDLVVLDI--KMPIMDGM 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-----------HREILA 110 E+ R +R S VP+I ++ SG DD + KP R A Sbjct: 63 EVLRRLREKSMVPVIFLTSKDDELDEALGLASGADDYIAKPFSLRLLIARIRALLRRTEA 122 Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 R +++ G + + D GE L E ILE L G ++ Sbjct: 123 RFQEKSEETPQNSHIIVRGRLVMDPDRHQVSWDGEDISLTVTEFLILEALAQRPGFVKSR 182 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 Q+ Y D V++ ++SHI +LR+K R F +++ +GY Sbjct: 183 DQLMDTAY-QDDVYVDDRTIDSHIKRLRRKFRQVDNQFKSIETLYGIGYRF 232 >gi|330445927|ref|ZP_08309579.1| response regulator [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490118|dbj|GAA04076.1| response regulator [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 225 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 38/222 (17%), Positives = 89/222 (40%), Gaps = 7/222 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++I+D ++ + G ++ + +S + ++ L L+ Sbjct: 4 LVIEDDITTREFIAQGLREHGFVVDEAEDGHQGLMMATSCDYQLIILDRMLPM--LDGLK 61 Query: 63 LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI---HHREILARVAAIYRR 118 + +RA +Q P++ +S S++ + +G DD + KP + + Sbjct: 62 VLAALRATENQTPILILSAMDSVEDRVAGLSAGSDDYLTKPFALAELVARAKILVKRNQA 121 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++ +R+ + L ++E +L+YLM + V++ +F +++ Sbjct: 122 SATISSEYIYDDLRLDIKSHRVWRGSRMLNLQQKEFLLLQYLMEHAESVVSRMSLFESVW 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + NV++ HI+ LRKKL + + R GY + Sbjct: 182 S-YHFDPKTNVIDVHIANLRKKLEEGGEPSLIHTVRGAGYVL 222 >gi|83646343|ref|YP_434778.1| response regulator [Hahella chejuensis KCTC 2396] gi|83634386|gb|ABC30353.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Hahella chejuensis KCTC 2396] Length = 228 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 44/224 (19%), Positives = 95/224 (42%), Gaps = 6/224 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A ++ + G ++ + L + D+ ++ L Sbjct: 3 LLVVEDEAKTREYLRKGLTEAGFVVDTAANGLDGRHLAMTEHFDLIVMDIML--PDLDGW 60 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L +R P++ ++ S+ + +SG DD + KP E+LARV I RR Sbjct: 61 RLLGSLREAGNATPVLFLTARDSVSDRVQGLESGADDYLVKPFAFSELLARVRNILRRGL 120 Query: 121 VSNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 V + + G + + R G L +E +LE + +G+ + ++ I S ++ Sbjct: 121 VPLSGNQLSVGDLTLDISRRSARRGGSEIQLTTKEFTLLELFVRRQGEVLPRSLIASQVW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + + + NV++ + +LR K+ + + + R +GY +D Sbjct: 181 DM-NFDSDTNVIDVAVRRLRMKVDDGHDIKLIQTVRGMGYRLDV 223 >gi|302384799|ref|YP_003820621.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] gi|302195427|gb|ADL02998.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] Length = 237 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 42/234 (17%), Positives = 87/234 (37%), Gaps = 17/234 (7%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D +++G G + + ++ ++ + Sbjct: 6 ILLVEDDKEIREGIEIYLRSQGYEVFQAADGVEGLKVLQREEIHLAIVDVM--MPRMDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + +R P+I +S + + G DD V+KP E+LARV + RR K Sbjct: 64 TMTVKLREAYDFPVIILSAKSEEVDKIMGLNIGADDYVSKPFTPMELLARVNSQLRRYKK 123 Query: 122 SNNRAETGPIRV------------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 + E + D + V + L E +IL L+ N G+ + Sbjct: 124 YMDMLEEKEQKEKSNVYSIGGLELNEDTVEVTVDEKPVKLTPIEFKILALLIKNPGRVFS 183 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 +I+ ++ + A+ + + H+ K+R+K+ N + +GY I+ Sbjct: 184 AEEIYERVWN--ERAINTDTIMVHVRKIREKIEINPKEPKYLKVVWGVGYKIEK 235 >gi|253579586|ref|ZP_04856855.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849087|gb|EES77048.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 224 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 35/221 (15%), Positives = 84/221 (38%), Gaps = 7/221 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + F + D+ ++ + Sbjct: 5 ILVVDDDKELVKMLCSYFNMKQYETITATDGMEALNKIK-MKPDIILLDIN--MPRMDGI 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY---RR 118 E+ R+IR+ P++ ++ ++ SG DD + KP RE+ AR+ R Sbjct: 62 EVCRLIRSKVLCPILFLTARVDEDDKINGLLSGGDDYITKPFSLRELEARIVTNIKREER 121 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + + + + G + E +I+E+L + G+ K +I+ + Sbjct: 122 HQQKTEYRFMDEMLIDYSEKIVAIAGHRMEFTKIEYQIIEFLSMHPGQVFDKERIYEQVC 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 G +D + + + ++RKK+ + + +++ +GY Sbjct: 182 G-YDAEGDSRTITELVRRIRKKIADYSEKEYIETVWGIGYR 221 >gi|225848484|ref|YP_002728647.1| transcriptional activator protein CopR [Sulfurihydrogenibium azorense Az-Fu1] gi|225643352|gb|ACN98402.1| transcriptional activator protein CopR [Sulfurihydrogenibium azorense Az-Fu1] Length = 224 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 40/221 (18%), Positives = 94/221 (42%), Gaps = 6/221 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++I+D + ++G +++ E + DV ++ L E Sbjct: 4 LIIEDDKELSHLIAKRLKEEGFAVQQAFDAEEGMSYATYEEYDVIVLDIML--PKMSGYE 61 Query: 63 LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA--AIYRRL 119 + R +R + P++ +S ++ + G DD + KP E++AR+ + Sbjct: 62 VIRQLREKKVKTPILVLSAKGEIEDKVKGLQLGADDYLTKPFSFPELIARINALIRRTKT 121 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++ + + + ++ G+ L +E +L+YL+ N + + + I ++ Sbjct: 122 IEEISKLKYADLTIDLLKKEVYRNGKKINLTAKEFELLKYLVENSERIITRNMILENVFD 181 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + D ++ NVV+ HI +LR+K+ + + + R GY + Sbjct: 182 I-DFDIDSNVVDVHIHRLREKIDKRFEKKLIHTVRGFGYVL 221 >gi|218441145|ref|YP_002379474.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] gi|218173873|gb|ACK72606.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7424] Length = 241 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 39/231 (16%), Positives = 95/231 (41%), Gaps = 12/231 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++ + F L+ N + + D+ ++ L Sbjct: 6 ILVVEDDTVILELIFRFFKQKNYQLKTANDGRSALEIFTYFNPDLVILDINL--PDIIGY 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 +L ++ + V ++ ++ + + + F G DD V KP +E+ RV A+ +R Sbjct: 64 DLCERMQKSTDVYVMMLTSRINPEDKIQGFRRGADDYVTKPFDLQELEWRVKALLKRQAR 123 Query: 120 ------KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + N + + + R+ V G+ L E +L +L ++ GK ++ ++ Sbjct: 124 REVISSQTPLNVLVWKDLTIDPNRREVTVLGQGIELTALEFDLLFFLASHPGKVWSRAEL 183 Query: 174 FSAIYGLFDEAVEE-NVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSIDW 222 ++ + + VV+ HI ++R+K++ + + R +GY + Sbjct: 184 IEKVWKVSCSISSDLRVVDVHIGQIRRKIQAVSSRSYLIKTVRGVGYKFEV 234 >gi|218779424|ref|YP_002430742.1| two component transcriptional regulator, winged helix family [Desulfatibacillum alkenivorans AK-01] gi|218760808|gb|ACL03274.1| two component transcriptional regulator, winged helix family [Desulfatibacillum alkenivorans AK-01] Length = 236 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 57/230 (24%), Positives = 93/230 (40%), Gaps = 15/230 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A +++ +G + + A D+ ++ + Sbjct: 7 IMVVDDDAHIREVVGFALKKEGFQTIPAKDGLQAVEMFAEATPDLVILDI--LMPEMDGT 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IRAHS VP+I +S + + G DD V KP RE++ARV A RR Sbjct: 65 EVCKKIRAHSDVPIIFLSSKDDEIDRILGLELGGDDYVTKPFSPRELIARVKARLRRRLT 124 Query: 122 SNNRAETGPI-----------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 A + R+ D R L RE RIL+ LM K + Sbjct: 125 EAKPAVSLQEKLGAILEKGRLRLDVDARIVSWDSVRVELTHREFRILQTLMGYPEKIFTR 184 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ YG D V + ++SHI +RKKL G + + + +GY + Sbjct: 185 EELIDGAYGR-DHFVSDRTIDSHIKSVRKKLAAVGG-EAIRTAHGVGYQL 232 >gi|71733992|ref|YP_273462.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. phaseolicola 1448A] gi|257487334|ref|ZP_05641375.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289647322|ref|ZP_06478665.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. aesculi str. 2250] gi|298485866|ref|ZP_07003942.1| DNA-binding heavy metal response regulator [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|71554545|gb|AAZ33756.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. phaseolicola 1448A] gi|298159555|gb|EFI00600.1| DNA-binding heavy metal response regulator [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320329839|gb|EFW85827.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. glycinea str. race 4] gi|330867883|gb|EGH02592.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330874409|gb|EGH08558.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. glycinea str. race 4] gi|330890476|gb|EGH23137.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. mori str. 301020] gi|331009063|gb|EGH89119.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 225 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 45/220 (20%), Positives = 85/220 (38%), Gaps = 4/220 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++I+D D + G +++ L + ++ L G Sbjct: 4 LIIEDEEKTADYLRRGLTEQGYAVDVARDGIEGLHLALENDHAIIILDVML--PGLDGFG 61 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLKV 121 + R +RA Q P+I ++ + + G DD + KP E++AR+ A R Sbjct: 62 VLRALRARKQTPVIMLTAREQVDDRIRGLREGADDYLGKPFSFLELVARLQALTRRSGGH 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + + R G L +E +L L +G ++KT I ++ + Sbjct: 122 EPVQITIADLWIDLISRKATRAGMRLDLTAKEFSLLSVLARRQGDILSKTSIAEMVWDI- 180 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + NVVE I +LR KL + + R +GY ++ Sbjct: 181 NFDSDTNVVEVAIKRLRAKLDGPHEHKLLHTIRGMGYVLE 220 >gi|256378111|ref|YP_003101771.1| two component transcriptional regulator, winged helix family [Actinosynnema mirum DSM 43827] gi|255922414|gb|ACU37925.1| two component transcriptional regulator, winged helix family [Actinosynnema mirum DSM 43827] Length = 232 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 44/224 (19%), Positives = 87/224 (38%), Gaps = 7/224 (3%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + ++ +D + D + + D+ ++ L Sbjct: 4 LILIAEDDESQAELLRRYLERDHHEVAVVHDGRAAIDTARERGPDLVVLDLML--PKVDG 61 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L++ R++RA S V ++ ++ + L D G DD + KP RE++ARV + RR Sbjct: 62 LDVCRVLRAESDVLVLVLTARSTEDDVLLGLDLGADDYMTKPFSPRELVARVRTLLRRRV 121 Query: 121 VSNNRAE---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 GPI V + G E R+LE L + + + Q+ + Sbjct: 122 EPRAPDPLLRAGPIAVDPVRHEVTAHGARVECTPGEFRLLETLASEVDRVFTREQLLRRM 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 +G FD + +++H+ LR+K+ + + + +GY + Sbjct: 182 HG-FDRYITGRTIDAHVKNLRRKVEPDPRRPVHLVTVYGIGYKL 224 >gi|226312392|ref|YP_002772286.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226095340|dbj|BAH43782.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 231 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 51/220 (23%), Positives = 98/220 (44%), Gaps = 4/220 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + ++G S + + D+ ++ L + Sbjct: 13 LLLVEDEHNLARYLQLELENEGFSTDIEYDGLSGLEKALTIEYDLILLDVML--PELSGI 70 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL R IR VP+I I+ + + DSG +D + KP E+ AR+ + R+ + Sbjct: 71 ELCRRIRETKDVPIIMITARGEVPDIVTGLDSGANDYLAKPFAIEELFARIRVLLRQRES 130 Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 N+ R+ + R + E L RE +L Y++ N+ + V++ QI +A++G Sbjct: 131 KANQEIVVGRLRIQPNARRVFLDEEEIMLTPREFDLLYYMVQNKEQAVSREQILTAVWG- 189 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 FD N+V+ +I LR K+ + + + R +GY++ Sbjct: 190 FDFMGNTNIVDVYIRYLRNKIESDPSVKLIHTVRGIGYTL 229 >gi|255281522|ref|ZP_05346077.1| DNA-binding response regulator RegX3 [Bryantella formatexigens DSM 14469] gi|255268010|gb|EET61215.1| DNA-binding response regulator RegX3 [Bryantella formatexigens DSM 14469] Length = 225 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 40/219 (18%), Positives = 90/219 (41%), Gaps = 3/219 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L++D + + ++G + + + + ++ L Sbjct: 7 LLVEDDQAIVENLTGFLKEEGFCVTAVSGQAAAMEALEAREFALVLLDVTLAQ--GNGYS 64 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 I++ +P+I ++ + + D G DD ++KP RE+++R+ + RR S Sbjct: 65 TCTAIKSRGDIPVIFLTALGDEFSVVTGLDMGADDYISKPFRPRELVSRMRTVLRRSGRS 124 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 + G + V E +G L E R+L + +RG + ++ + I+ Sbjct: 125 QRVMKIGNLSVDMVKGTVEKEGREIYLSAMEYRLLLIFLNHRGMVLTRSVLLEEIWDAAG 184 Query: 183 EAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 E V +N + +I +LR+K+ + + + R +GY + Sbjct: 185 EFVNDNTLTVYIKRLREKIEDDPANPQILLTVRGVGYRL 223 >gi|168183441|ref|ZP_02618105.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|182673489|gb|EDT85450.1| DNA-binding response regulator [Clostridium botulinum Bf] Length = 230 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 47/226 (20%), Positives = 87/226 (38%), Gaps = 9/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + + S D+ ++ L G Sbjct: 7 ILVVEDNNDINKLLCDMLRQSEYITKSAYSGTEALIYLKEYDWDMVLLDLML--PGMDGK 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 +L IR +P+I IS ++ G DD + KP E+ AR+ + RR K Sbjct: 65 KLLSNIRKSKPMPVIIISAKEEKDIKIEALRMGADDYITKPFDIDEVSARIDSHLRRYKE 124 Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 +N ++ D R+ + + L RE IL+ LM K K+ +F + Sbjct: 125 FSNITPQNLLKYKEISLNKDTREVFIHNKQIMLTTREFDILQLLMGYPKKVFTKSNLFES 184 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 ++ + ++N + HIS LR KL + + + +GY +D Sbjct: 185 VWS-SEYLCDDNTINVHISNLRNKLSKAGTENEYIQTIWGIGYKLD 229 >gi|170021416|ref|YP_001726370.1| DNA-binding transcriptional activator CusR [Escherichia coli ATCC 8739] gi|169756344|gb|ACA79043.1| two component heavy metal response transcriptional regulator, winged helix family [Escherichia coli ATCC 8739] Length = 226 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 37/223 (16%), Positives = 98/223 (43%), Gaps = 6/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + G ++ ++ L +A D+ ++ L Sbjct: 3 ILIVEDEIKTGEYLSKGLTGAGFVVDHADNGLTGYHLAMTAEYDLVILDIML--PDVNGW 60 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118 ++ R++R A P++ ++ +++ + + G DD + KP E+LARV Sbjct: 61 DIIRMLRTAGKGTPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGN 120 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++ ++ + + + R G+ L +E +LE+ + ++G+ + ++ I S ++ Sbjct: 121 TMITESQFKVADLSIDLVSRKVSRAGKRIVLTSKEFSLLEFFIRHQGEVLPRSLIASQVW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + + N ++ + +LR K+ N + + R +GY ++ Sbjct: 181 DM-NFDSDTNAIDVAVKRLRAKIDNDYETKLIQTVRGVGYMLE 222 >gi|146311032|ref|YP_001176106.1| two component transcriptional regulator [Enterobacter sp. 638] gi|145317908|gb|ABP60055.1| two component transcriptional regulator, winged helix family [Enterobacter sp. 638] Length = 238 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 47/226 (20%), Positives = 96/226 (42%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + D+G + L A+ D ++ L L Sbjct: 7 ILLVEDDGDIASLLRLHLEDEGYVITHEVDGAKALLLLEQAQWDAVILDLML--PHVDGL 64 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R IR +P+I IS S + ++G DD + KP +E++AR+ A++RR + Sbjct: 65 EICRRIRQLTRYLPIIIISARSSETDRITGLETGADDYLAKPFSVQELIARIKALFRRQQ 124 Query: 121 -----VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 +N + + + R ++ G+ L RE +L + + G+ ++ + Sbjct: 125 AMGLAQTNGQIYAHGLALDPLLRSVQLNGKEVVLTPREFELLYFFARHPGEVFSRLALLE 184 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++G + E+ V +HI++LR K+ + + + + GY Sbjct: 185 QVWG-YQHEGYEHTVNTHINRLRIKIEKDAAEPEIIRTVWGKGYKF 229 >gi|229015017|ref|ZP_04172094.1| DNA-binding response regulator [Bacillus mycoides DSM 2048] gi|229021448|ref|ZP_04178059.1| DNA-binding response regulator [Bacillus cereus AH1273] gi|229024498|ref|ZP_04180945.1| DNA-binding response regulator [Bacillus cereus AH1272] gi|228736786|gb|EEL87334.1| DNA-binding response regulator [Bacillus cereus AH1272] gi|228739853|gb|EEL90239.1| DNA-binding response regulator [Bacillus cereus AH1273] gi|228746284|gb|EEL96210.1| DNA-binding response regulator [Bacillus mycoides DSM 2048] Length = 226 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 51/225 (22%), Positives = 94/225 (41%), Gaps = 8/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + D +F D + + E + D+ ++ Sbjct: 5 ILVVDDESEIVDVLSDIFSDRDYKVLKAYNGEQALDHLKTQ-VDLVILDIM--MPKMDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E +++R + P++ +S S + F G DD + KP +E++ARV A RR K Sbjct: 62 EFCKVVREQIKCPILFLSAKHSEIDKVKGFTLGGDDYITKPFQVKELIARVEAHLRREKR 121 Query: 122 SNNRAETGPI----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + D + G + +E +ILE L N G+ +K QI+ I Sbjct: 122 ERVNLQNQRFLGNLTINYSQHDVFIDGVKIDVTSKEFKILELLTVNLGQIFSKEQIYEKI 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +GL D + N + HI+ LR KL + + + +GY ++ Sbjct: 182 WGL-DAVGDLNTIIVHINNLRAKLSLGMSTYHIKTVWGVGYKLEK 225 >gi|261345981|ref|ZP_05973625.1| DNA-binding response regulator BaeS [Providencia rustigianii DSM 4541] gi|282565866|gb|EFB71401.1| DNA-binding response regulator BaeS [Providencia rustigianii DSM 4541] Length = 233 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 47/225 (20%), Positives = 87/225 (38%), Gaps = 7/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + G + D+ ++ L G + Sbjct: 11 ILIVEDEPKLGQLLFDYLQAAGYVPALLMRGDEVIPYVQKHFPDLILLDLML--PGMDGI 68 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R +R S VP+I ++ L + G DD V KP RE++ARV I RR + Sbjct: 69 SVCRELRKFSDVPVIMVTAKTEEIDRLLGLEIGADDYVCKPFSPREVVARVKTILRRCQN 128 Query: 122 SNNR---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++ + + + + ++ L E R+L++L N G ++ Q+ +Y Sbjct: 129 THTHSLEQQQKQLVIDENAFQVRYGDKLLELTPAEFRLLKFLSDNAGTVFSRDQLLDILY 188 Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 V + ++SH+ LR+KL + S LGY D Sbjct: 189 DDH-RIVTDRTIDSHVKNLRRKLEFLDPEKTFIRSIYGLGYRWDE 232 >gi|156935705|ref|YP_001439621.1| DNA-binding transcriptional regulator BasR [Cronobacter sakazakii ATCC BAA-894] gi|156533959|gb|ABU78785.1| hypothetical protein ESA_03574 [Cronobacter sakazakii ATCC BAA-894] Length = 220 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 51/222 (22%), Positives = 96/222 (43%), Gaps = 9/222 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D L+++G G++G +L+ + + L S + ++ L + Sbjct: 3 LLIVEDDLLLQEGLALALGNEGYALDCAANAAEGDALLQSGEYSLIILDLGL--PDKDGA 60 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119 L R P++ ++ +L+ + D+G DD + KP E+ AR A I R Sbjct: 61 TLLSQWRRSGVTTPVLILTARDALEDRVSGLDAGADDYLVKPFALAELHARARALIRRYQ 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S+N + I + + +QG + +E +L LM G+ V + + IY Sbjct: 121 GHSDNLLQHDDITLNLQTQQVLLQGMPVEVTPKEFALLTRLMMRIGQTVHRETLQQDIYS 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D N +E HI LR+KL G + + R +GY ++ Sbjct: 181 WQD-DPSSNTLEVHIHNLRRKL----GKTRIRTIRGVGYRLE 217 >gi|33866766|ref|NP_898325.1| two-component response regulator [Synechococcus sp. WH 8102] gi|33639367|emb|CAE08751.1| two-component response regulator [Synechococcus sp. WH 8102] Length = 262 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 40/229 (17%), Positives = 83/229 (36%), Gaps = 10/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +LI+D ++D G ++ + + L D+ ++ L G + Sbjct: 5 ILLIEDDQDMRDLVSGHLEHSGFDVQRADDGIKGQALALQYTPDLILLDLMLPKVDGLTL 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVA 113 + R S +P++ ++ + + F+SG DD + KP E+ R Sbjct: 65 CQRLRRDDRTSGIPILMLTALGGTKDKVSGFNSGADDYLTKPFDLEELQARVKALLRRSD 124 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 N GP+ + + + L E +L L+ G+ VA + I Sbjct: 125 RAPVGSSNHNEILSYGPLTLVPERFEAIWFDTPVRLTHLEFELLHCLLQRHGQTVAPSLI 184 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 ++G ++ + + H+ LR KL + + + GY ++ Sbjct: 185 LKEVWG-YEPDDDIETIRVHVRHLRTKLEPDPRKPRFIKTVYGAGYCLE 232 >gi|327405853|ref|YP_004346691.1| winged helix family two component transcriptional regulator [Fluviicola taffensis DSM 16823] gi|327321361|gb|AEA45853.1| two component transcriptional regulator, winged helix family [Fluviicola taffensis DSM 16823] Length = 227 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 46/223 (20%), Positives = 91/223 (40%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + ++ + N+ + D+ ++ L G + Sbjct: 4 ILIIEDDPQISSIVQKGLTEENFETKTANNGLKGLDEFHFWKPDLIILDIML--PGLNGI 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYR 117 ++ IR SQVP++ ++ + + DSG DD + KP E+ ARV I Sbjct: 62 QVCSKIRETSQVPILMLTALGTPENVALGLDSGADDYLPKPFKFIELNARVRSLLRRIEN 121 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 ++ S+ + + D + G + L E R+L M + K ++ I + Sbjct: 122 QVTASSTLFSFSDLVIDDDRKTVIRNGHLITLTSTEYRLLLLFMMSPKKVFSRIDILEEV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G+ D NVV+ +++ LRKKL + + +GY + Sbjct: 182 WGI-DFESGTNVVDVYVNYLRKKLMQFGDSKLIHTVIGMGYVM 223 >gi|300855144|ref|YP_003780128.1| two-component response regulator [Clostridium ljungdahlii DSM 13528] gi|300435259|gb|ADK15026.1| two-component response regulator [Clostridium ljungdahlii DSM 13528] Length = 226 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 39/226 (17%), Positives = 86/226 (38%), Gaps = 14/226 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD +++ + + + + S + D+ ++ + Sbjct: 7 LIVDDDENIRELLTIMLKNQNIDSLCAKDGIEALEILKSNKIDLILLDVM--MPRMDGMM 64 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 IR +P+I +S + G DD + KP + ++A++ + RR K Sbjct: 65 ACMKIRESLNLPIIILSAKVDDADKIMGLTIGADDYIAKPFNSMLLIAKIRSHLRRYKEF 124 Query: 123 NNRAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 N+ + + D ++ L E +IL +L N+ ++ QI+ Sbjct: 125 NSNFHDNSSLIKIQDMLINMDKHTVKIDNSEINLTPHEFKILAFLAKNKDNVLSIKQIYE 184 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ + V HI +LR+KL+ D + + +GY I+ Sbjct: 185 NVWEEPYMEFD-RTVTVHIRRLRQKLK----KDYIKTVWGVGYKIE 225 >gi|291537655|emb|CBL10767.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Roseburia intestinalis M50/1] gi|291537790|emb|CBL10901.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Roseburia intestinalis XB6B4] Length = 223 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 51/223 (22%), Positives = 96/223 (43%), Gaps = 6/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +++D +++ + G +E F + ++ L G G + Sbjct: 4 IYIVEDDINIREIERYALKNSGYEVEEFEGSASFFKRLEKNIPSLILLDIMLPGEDGLDI 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118 L R +A + VP+I ++ S + D G DD + KP E+++RV A Sbjct: 64 LTRIRADKATADVPVIMVTAKTSELDKVKGLDLGADDYITKPFGVMELISRVKALLRRTS 123 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 +++ I + D V G++ L +E +L+YLM N+G +++ +I ++ Sbjct: 124 RMNEDSQLIHEDILMDMDKHAVTVAGQLCELTFKEFELLKYLMLNQGIVLSRDKIMDQVW 183 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 G F+ E V+ HI LR+KL + + R +GY I+ Sbjct: 184 G-FEYEGESRTVDMHIKTLRQKLGAAGS--CIKTVRNVGYMIE 223 >gi|255305139|ref|ZP_05349311.1| two-component response regulator [Clostridium difficile ATCC 43255] Length = 231 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 46/223 (20%), Positives = 93/223 (41%), Gaps = 6/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +++DD + + ++F G + +S E + D+ ++ G Sbjct: 6 ILVVDDETDLLEMVKSIFTRAGFTQVLTASSGEAALKMCEEQEPDMMILDVM--MPGMDG 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119 + +R S++P++ ++ + F++G DD + KP +E+L RV AI R Sbjct: 64 FAALKELRKTSKIPVLMLTARGEAEDKFVGFENGADDYLLKPFLPKELLFRVQAILKRVY 123 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + V + + GE L +E ++ E L N+G+ V + AI G Sbjct: 124 PEKERKVFFDAATVDLEKAIVQRSGENISLTAKEFQLFEKLYENQGRIVTTGALCQAICG 183 Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 F E+ + +HI LR+K+ + + + +GY ++ Sbjct: 184 DF-WQGYESTLATHIRHLREKIEENPSKPVALVTIKGIGYRLN 225 >gi|187777129|ref|ZP_02993602.1| hypothetical protein CLOSPO_00674 [Clostridium sporogenes ATCC 15579] gi|187774057|gb|EDU37859.1| hypothetical protein CLOSPO_00674 [Clostridium sporogenes ATCC 15579] Length = 231 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 49/229 (21%), Positives = 88/229 (38%), Gaps = 13/229 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD A + + +DG + + + + + + ++ G L+ Sbjct: 5 LIVDDEAEIIELMEIYLLNDGYKVFKATNGLDALNIINEEKIHLVILDIM--MPGIDGLQ 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + IR +P+I +S + +G DD + KP E+LARV A RR Sbjct: 63 VCMKIRKEYNIPIIMVSAKGQEMDKIQGLSTGADDYIVKPFSIMELLARVKAQIRRYVYL 122 Query: 123 NNRAETGPIRV---------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 N + + + G L E +IL L +N GK + I Sbjct: 123 NENHKQLDNKDVIEIKGITINKRNHKVHLFGTELKLTPTEYKILLLLASNGGKVFSAEDI 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + I+ N V +HI +LR+KL + V++ +GY I+ Sbjct: 183 YKEIWTEKYFEGN-NTVMAHIWRLREKLEDNPKEPKIVETVWGVGYKIE 230 >gi|307946075|ref|ZP_07661410.1| transcriptional regulatory protein OmpR [Roseibium sp. TrichSKD4] gi|307769739|gb|EFO28965.1| transcriptional regulatory protein OmpR [Roseibium sp. TrichSKD4] Length = 242 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 44/229 (19%), Positives = 85/229 (37%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ +G S +A D+ ++ GE L Sbjct: 8 ILVVDDHRDIRETLARYLIKNGFRATSVESAAHARKALKAAVIDLVVLDIM--MPGEDGL 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R + A +P+I ++ + + G DD V KP + RE+LAR+ A+ RR Sbjct: 66 SLCRHLVATGSIPVILLTAMADDMDRVIGLEIGADDYVTKPFNPRELLARIKAVLRRTNT 125 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF---------PLPRRERRILEYLMANRGKRVAKTQ 172 + + S G+ PL E ++L + + + Q Sbjct: 126 EPKDRDPLDHELLSFEGWQLHVGKRELFDAEGAPVPLSSGEFQLLCAFLKRPKMVLNRDQ 185 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + G V + +++ +S+LRKK+ + + + GY Sbjct: 186 LMDLTTGRM-PNVFDRSIDNQVSRLRKKIEVDPKDPKLIKTVWGGGYMF 233 >gi|257792735|ref|YP_003183341.1| two component transcriptional regulator, winged helix family [Eggerthella lenta DSM 2243] gi|325831086|ref|ZP_08164410.1| putative transcriptional regulatory protein ResD [Eggerthella sp. HGA1] gi|257476632|gb|ACV56952.1| two component transcriptional regulator, winged helix family [Eggerthella lenta DSM 2243] gi|325487007|gb|EGC89453.1| putative transcriptional regulatory protein ResD [Eggerthella sp. HGA1] Length = 236 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 49/222 (22%), Positives = 84/222 (37%), Gaps = 8/222 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + F G + D+ ++ + Sbjct: 16 LLVVDDEPEIVALLDEYFTGLGYRVLTAEDGATALKRA-EQSPDLIVLDVGMPL--MDGY 72 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI---YRR 118 + R +R H P++ ++ L+ F++G DD V KP + ARV A R Sbjct: 73 AVCRRLREHLTCPILFLTARVEDVDALEGFEAGADDYVLKPFSLAVLGARVKAHLARDNR 132 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 V G I + R G L RRE I+ +L + G+ + +I + Sbjct: 133 QHVRAEVRFDGDIAIDYRSRTVTAAGRPVELTRREFDIVAFLSKHPGQVFDRDRIHERV- 191 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYS 219 G ++ + VV HI ++RKKL DPV++ +GY Sbjct: 192 GGWENESDSQVVTEHIRRIRKKLAAAGAEPDPVETVWGMGYR 233 >gi|228990402|ref|ZP_04150367.1| Two-component response regulator [Bacillus pseudomycoides DSM 12442] gi|228768928|gb|EEM17526.1| Two-component response regulator [Bacillus pseudomycoides DSM 12442] Length = 210 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 38/215 (17%), Positives = 81/215 (37%), Gaps = 8/215 (3%) Query: 11 VKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH 70 ++ + G + + + + D ++ + + + IR Sbjct: 1 MRQLVGMYLDNFGYEWGEAENGKDALHMLDTDHYDFVILDIM--MPQMDGISVCKEIRKT 58 Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH---REILARVAAIYRRLKVSNNRAE 127 S VP+I ++ ++ G DD + KP + V Y + + + Sbjct: 59 SDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTKQEQQEEELQ 118 Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 GPI + R E+ GE L +E +L +L + G+ ++ Q+ ++G +D A Sbjct: 119 FGPIVINEKSRRIEIDGEPISLTVKEFDLLYFLCGHSGQVFSREQLLEKVWG-YDYAGST 177 Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 V++H+ +R KL + + +GY + Sbjct: 178 RTVDTHVKTMRLKLGESGN--YIQTVWGVGYKFEV 210 >gi|325479624|gb|EGC82716.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Anaerococcus prevotii ACS-065-V-Col13] Length = 219 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 50/221 (22%), Positives = 92/221 (41%), Gaps = 6/221 (2%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 M L++D +++ + G + GF+ D+ ++ L + Sbjct: 1 MIYLVEDDKSIRNLVEYALREKGYEVCGFSDGSNIVDKVRDENVDLLILDIML--PEKDG 58 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L + + IR S +P+I ++ + D G DD + KP E+++RV A+ RR K Sbjct: 59 LSILKEIREFSNLPVIMLTARTDEFDKVTGLDLGADDYITKPFSILELISRVKAVLRRSK 118 Query: 121 VSNNRAETGPIRVFSDGRDPEVQ-GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + T + + + L +E +L LM+N G +++ I+G Sbjct: 119 KKDKDDLTYKEISLNTSKRRVKVLDDKIDLTYKEFEMLLLLMSNVGNVISREDFLLKIWG 178 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D E V+ HI+ LR KL+ + + R LGY + Sbjct: 179 -YDYEGETRTVDVHIASLRSKLKETG--KYIHTVRNLGYKL 216 >gi|310778072|ref|YP_003966405.1| two component transcriptional regulator, winged helix family [Ilyobacter polytropus DSM 2926] gi|309747395|gb|ADO82057.1| two component transcriptional regulator, winged helix family [Ilyobacter polytropus DSM 2926] Length = 230 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 38/227 (16%), Positives = 87/227 (38%), Gaps = 12/227 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L+DD + + + ++ + +S D+ ++ L + Sbjct: 7 LLVDDDIEICQMIKKALDPENIETLTISTGREARNVINSQAFDLIILDIML--DDTDGFQ 64 Query: 63 LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH------REILARVAAI 115 L + I+A +P+I +S + G DD + KP + R + Sbjct: 65 LLKKIQAEDIEIPVIFLSGKQQDYDKILALGMGADDYITKPFSMSVLIAKIKAHLRRSDK 124 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + L+ S+ + P + D GE L +E ++++ M N + K Q++ Sbjct: 125 IKELQTSSRKITKAPFVLNIDTYQLFKDGEEIFLSSKEIMLMKFFMENPNRVFTKEQLYE 184 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 ++ + ++ N + +I LRKK+ + + + + +GY + Sbjct: 185 KVWN--NTIIDNNSIMVYIRHLRKKIEDDSKNPEYIQTVWGIGYKFN 229 >gi|310828577|ref|YP_003960934.1| two component transcriptional regulator [Eubacterium limosum KIST612] gi|308740311|gb|ADO37971.1| two component transcriptional regulator [Eubacterium limosum KIST612] Length = 229 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 47/219 (21%), Positives = 89/219 (40%), Gaps = 4/219 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + G + +D + S++ + D+ ++ L L Sbjct: 8 ILIVEDDRALNQGLVLSLKNDSYTTLSAFSIKEAREKLTDNTFDLIVLDVNL--PDGNGL 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-HREILARVAAIYRRLK 120 EL + IR S VP+I ++ + ++G DD + KP A + R K Sbjct: 66 ELCQEIRRRSAVPIIFLTANDMEMDVVIGLENGGDDYITKPFSLAILRARIAALLRRSQK 125 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 NR + D + L + E+++L+ L+ANRG V + + ++G Sbjct: 126 ERQNRIKIDAFTFDFDQMVFLKGEDELTLSKTEQKLLKLLLANRGTTVTRDLLLEKVWGD 185 Query: 181 FDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGY 218 + V+EN + I +LR KL + + + LGY Sbjct: 186 SMDFVDENALSVTIRRLRSKLEDNSSKPVYIQTVYGLGY 224 >gi|225569381|ref|ZP_03778406.1| hypothetical protein CLOHYLEM_05465 [Clostridium hylemonae DSM 15053] gi|225161589|gb|EEG74208.1| hypothetical protein CLOHYLEM_05465 [Clostridium hylemonae DSM 15053] Length = 230 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 47/220 (21%), Positives = 97/220 (44%), Gaps = 5/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D ++ G +G + + L + D+ + L L Sbjct: 4 ILLLEDDESLRRGISLKLEKEGYDVLCASGSREARRLFDENKTDLIISDITLE--DGNGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R IR S V ++ ++ ++ +D+G DD + KP ++++V A RR + Sbjct: 62 DFCREIRRVSDVFILFLTALDQEVDIVNGYDTGADDYITKPFSLMVLISKVNAFMRRREH 121 Query: 122 SNNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + ++GE PL ++E ++L Y M + + ++K QI A++ Sbjct: 122 TGGEGTVLTAPDLTLDCKEMKVFIKGEETPLSKKEMQLLAYFMEHPRQIISKEQILEAVW 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + + V++N V +IS+L+KKL + + + R +GY Sbjct: 182 DVDGQFVDDNTVPVNISRLKKKLGGDSETEYIKNIRGIGY 221 >gi|197295461|ref|YP_002154002.1| two-component regulatory system, response regulator protein [Burkholderia cenocepacia J2315] gi|195944940|emb|CAR57552.1| two-component regulatory system, response regulator protein [Burkholderia cenocepacia J2315] Length = 239 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 49/228 (21%), Positives = 89/228 (39%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A + D D+ + L D ++ L G L Sbjct: 7 ILIVEDDADIADVLSLHLRDERYEVVHSADGAEGLRLLEQGGWDALILDLML--PGVDGL 64 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R RA P+I S S + + G DD + KP E++ARV A+ RR+ Sbjct: 65 EICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVD 124 Query: 121 VSNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + R+ V G L RE +L + + GK ++ + Sbjct: 125 ALARDSRLDAGTLDVAGLAIDPIAREASVDGARIDLTPREFDLLYFFARHPGKVFSRMDL 184 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 +A++G + E+ V +HI++LR K+ + + + GY + Sbjct: 185 LNAVWG-YQHEGYEHTVNTHINRLRAKIEADPAEPVRILTVWGRGYKL 231 >gi|262171161|ref|ZP_06038839.1| putative two-component response regulator [Vibrio mimicus MB-451] gi|261892237|gb|EEY38223.1| putative two-component response regulator [Vibrio mimicus MB-451] Length = 236 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 41/226 (18%), Positives = 78/226 (34%), Gaps = 11/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ G G + + L + D+ ++ G+ Sbjct: 7 ILVVDDNQELREALKDYLGKAGFEVICAENGAVMWKLLETQNPDLIILDIM--MPGDDGF 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-------ILARVAA 114 L + +R HS VP+I ++ + + G DD + K RE IL R Sbjct: 65 TLCQKLRKHSSVPIIMLTAVTEETDRVTGLELGADDYITKSFSPRELLARIKAILRRSQL 124 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + V L + +L + + K + + I Sbjct: 125 SDSLSVARKVTFAGWQLDTITRQLKHLETHAVKQLSGADLSLLGLFINHAEKLLTRDDIA 184 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I+G D E ++ IS+LR L +K + + R GY + Sbjct: 185 REIWGR-DADPFERGIDVQISRLRTHLEDK-DRTLILTVRNKGYML 228 >gi|168183301|ref|ZP_02617965.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|237793939|ref|YP_002861491.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] gi|182673496|gb|EDT85457.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|229261920|gb|ACQ52953.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] Length = 230 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 43/229 (18%), Positives = 89/229 (38%), Gaps = 11/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++D ++G ++ + + ++ ++ L Sbjct: 5 ILVVDDEKEIRDLLEINLTNEGYNVFKARYGKEALEILEREEVNLMVLDIM--MPDMDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-------REILARVAA 114 E+ + R +P++ +S ++ +G DD V KP +H R +L R Sbjct: 63 EVCKRARQKYSIPILMLSAKVEDMDRIEGIMTGADDYVCKPFNHLELAVRIRALLRRAYF 122 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + ++++S+N + + + L RE IL L NRG + +IF Sbjct: 123 LNTKMQISDNIIRIESMVIDKKQHKVTINDNEIDLTAREFEILYLLANNRGMVFSAEEIF 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222 ++ N V H+S+LR K+ G + + +GY I+ Sbjct: 183 EKVWKER-YYQSNNTVMVHMSRLRDKIEQYMEGSKVIHTVWGVGYKIEK 230 >gi|164688245|ref|ZP_02212273.1| hypothetical protein CLOBAR_01890 [Clostridium bartlettii DSM 16795] gi|164602658|gb|EDQ96123.1| hypothetical protein CLOBAR_01890 [Clostridium bartlettii DSM 16795] Length = 236 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 44/226 (19%), Positives = 95/226 (42%), Gaps = 8/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + +G +L+ +LE + +S D+ ++ L Sbjct: 4 ILMVEDDSTIAFAVKYAVEQEGFNLDIAENLENARKIVNSKEYDLILLDVML--PDGNGY 61 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E + +R H P+I ++ + D G DD + KP RE+++R+ AI RR Sbjct: 62 EFLKQLREHDEDTPVIFLTACDEEVNIVMGLDIGGDDYITKPFRVRELISRINAILRRKG 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFP----LPRRERRILEYLMANRGKRVAKTQIFSA 176 S + + E + L E ++L L+ N+ +++ QI Sbjct: 122 KSQDSNKKILKFKNISIHTLEARVFKNNEEIFLTSAEYKLLLILIQNKNMVLSRAQILEK 181 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221 ++ + + + +N + +I +LR+K+ + + + R LGY + Sbjct: 182 LWDVTYDFINDNTLSVYIKRLREKIEDDSSKPQYILTVRGLGYKWN 227 >gi|49081934|gb|AAT50367.1| PA1637 [synthetic construct] Length = 231 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 49/223 (21%), Positives = 91/223 (40%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LIDD ++ G + + E + R D+ ++ L Sbjct: 8 ILLIDDEPQIRKFLRISLNAQGYRVLEAGTGEEGLAQAALNRPDLVVLDLGL--PDRDGQ 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 ++ R +R SQVP++ +S S + D G +D V KP +E LARV + Sbjct: 66 DILRDLREWSQVPVLVLSVRASEGEKVLALDGGANDYVTKPFGIQEFLARVRVLLRQAAQ 125 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + GP++V R ++G L R+E +L L + G+ V + Q+ I+ Sbjct: 126 GESPEASVAVGPLQVDFAYRRVTLEGAEVALTRKEYAVLAALARHLGRVVTQQQLLKDIW 185 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 G + + + + LR+KL + + ++ +GY + Sbjct: 186 GPTHVE-DTHYLRVVVGHLRQKLGDDPASPRFLVTEAGVGYRL 227 >gi|330988080|gb|EGH86183.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. lachrymans str. M301315] Length = 225 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 45/220 (20%), Positives = 84/220 (38%), Gaps = 4/220 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++I+D D + G +++ L + ++ L G Sbjct: 4 LIIEDEEKTADYLRRGLTEQGYAVDVARDGIEGLHLALENDHAIIILDVML--PGLDGFG 61 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLKV 121 + R +RA Q P+I ++ + + G DD + KP E++AR+ A R Sbjct: 62 VLRALRARKQTPVIMLTAREQVDDRIRGLREGADDYLGKPFSFLELVARLQALTRRSGGH 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + + R G L +E +L L +G + KT I ++ + Sbjct: 122 EPVQITIADLWIDLISRKATRAGMRLDLTAKEFSLLSVLARRQGDILTKTSIAEMVWDI- 180 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + NVVE I +LR KL + + R +GY ++ Sbjct: 181 NFDSDTNVVEVAIKRLRAKLDGPHEHKLLHTIRGMGYVLE 220 >gi|325521242|gb|EGD00125.1| two component heavy metal response transcriptional regulator [Burkholderia sp. TJI49] Length = 219 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 41/220 (18%), Positives = 89/220 (40%), Gaps = 4/220 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + G ++ + + D+ ++ L G+ Sbjct: 3 ILIVEDEPKTGAYLRKGLTEAGYVVDWVEDGITGQHQAETEEYDLLVLDVML--PGQDGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120 L + +R P++ ++ + + + G DD + KP E+ AR+ +I R Sbjct: 61 TLLQNLRRSKSTPVLFLTARDDVGDRVKGLELGADDYLAKPFDFVELTARIKSILRRGQP 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 +N + + R QG+ L +E +L LM G+ + + I S ++ + Sbjct: 121 RDSNTLRAADLELDLTRRKATRQGDTILLTAKEFALLWLLMRREGEILPRATIASQVWDM 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + NVV+S I +LR K+ + + + R +GY + Sbjct: 181 -NFNSDTNVVDSAIRRLRSKIDDAYEPKLIHTVRGMGYVL 219 >gi|302551904|ref|ZP_07304246.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces viridochromogenes DSM 40736] gi|302469522|gb|EFL32615.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces viridochromogenes DSM 40736] Length = 232 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 43/223 (19%), Positives = 85/223 (38%), Gaps = 6/223 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L +D A + + +G +E D+ ++ L G LE Sbjct: 12 LLAEDDASISEPLARALRREGYEVEVREDGPTALDAGMQGGVDLVVLDLGL--PGMDGLE 69 Query: 63 LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-HREILARVAAIYRRLK 120 + R +R +P++ ++ T+ D+G DD V KP + A + R Sbjct: 70 VARRLRGEGHAIPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAA 129 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 T +R+ + + E L +E +L L+ + G+ V + Q+ ++ Sbjct: 130 EPQQPPATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 189 Query: 181 FDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222 + ++ HIS LRKKL + + + R +G+ + Sbjct: 190 TWWS-STKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEK 231 >gi|256380199|ref|YP_003103859.1| two component transcriptional regulator, winged helix family [Actinosynnema mirum DSM 43827] gi|255924502|gb|ACU40013.1| two component transcriptional regulator, winged helix family [Actinosynnema mirum DSM 43827] Length = 226 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 46/226 (20%), Positives = 88/226 (38%), Gaps = 13/226 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + D A +G + + + D+ ++ L G LE Sbjct: 6 LVVEDDPTIADSVAARLRAEGFEVLVAHDGPSGVGRALAEGPDLVVLDVML--PGFDGLE 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------AIY 116 + R ++A VP++ ++ L G DD + KP RE+ ARV Sbjct: 64 VCRRVQAQRAVPVLMLTARGEETDLLVGLAVGADDYLTKPFSLRELAARVHALLRRVDRE 123 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 R +NR G + V R G L E ++L +L ++ ++ S Sbjct: 124 RERGSRSNRIVLGDVEVDLGERRVLKGGSEVHLTPTEFQLLVHLAGRPRAVQSRERLLSE 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 ++ + V+SH+ LR+KL G + + +GY+++ Sbjct: 184 VWDWPE-GTSTRTVDSHVKALRRKL----GGGLIRTVHSVGYALEV 224 >gi|320095894|ref|ZP_08027520.1| DNA-binding heavy metal response regulator [Actinomyces sp. oral taxon 178 str. F0338] gi|319977174|gb|EFW08891.1| DNA-binding heavy metal response regulator [Actinomyces sp. oral taxon 178 str. F0338] Length = 219 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 52/222 (23%), Positives = 93/222 (41%), Gaps = 10/222 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + G E +++ R + ++ L Sbjct: 4 ILIVEDERRIASFVAKGLRAAGFVPEVYSTGAEAVEAALQGRGALMLLDVGL--PDIDGF 61 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ IR S +P+I ++ S+ + + G DD V KP E+LARV R Sbjct: 62 EVLERIRGQGSGMPVIMLTARTSVADRVAGLEGGADDYVPKPFSFEELLARVRLRLREEA 121 Query: 121 VSNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + G + + R V L RE +LE M N G+ +++ Q+ SA++ Sbjct: 122 PAAGGLTLARGSLVLDLKSRRARVGERWVDLSAREFTLLETFMRNPGQVLSREQLLSAVW 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G+ D NVV+ ++S LR+K+ G D ++ R +GY + Sbjct: 182 GI-DFDGGSNVVDVYLSYLRQKI----GKDRFETVRGMGYRL 218 >gi|310641893|ref|YP_003946651.1| alkaline phosphatase synthesis transcriptional regulatory protein phop [Paenibacillus polymyxa SC2] gi|309246843|gb|ADO56410.1| Alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Paenibacillus polymyxa SC2] Length = 237 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 47/230 (20%), Positives = 92/230 (40%), Gaps = 15/230 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++IDD + +G +E + + D+ ++ L +E Sbjct: 6 LVIDDEEKISRLLQLELSHEGYVVEIAQTGREGLEKALAHTWDIIILDVML--PEINGVE 63 Query: 63 LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + IR + P+I ++ + + D G +D + KP E+LAR+ A R Sbjct: 64 VLKQIRKVDNHTPIIMVTARNTTPDKVSGLDEGANDYITKPFEIEELLARMRASMRNQLE 123 Query: 122 SNNRAETGPIRVF-----------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 A + R +G+ L +E +L YLM ++ + + + Sbjct: 124 PAATASPKEDKQQSKLQVDSLVLEPKTRSVVREGKRIELTPKEFDLLLYLMEHKNQVLHR 183 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 Q+ ++G FD + NVV+ +I +RKK+ + + + R +GY I Sbjct: 184 DQMIQDVWG-FDFVGDTNVVDVYIRYVRKKIDHGYKKKLIKTVRGVGYCI 232 >gi|302060525|ref|ZP_07252066.1| transcriptional regulatory protein PhoP, putative [Pseudomonas syringae pv. tomato K40] Length = 225 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 55/223 (24%), Positives = 107/223 (47%), Gaps = 5/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D AL++ + G +E + E + + D++ I+ L G L Sbjct: 3 LLVVEDEALLRHHLRTRLTEAGHVVEAVANAEEALYQVAQFNHDLAVIDLGL--PGIGGL 60 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119 +L R +RA P++ ++ + Q ++ +G DD V KP E+ AR+ A + R Sbjct: 61 DLIRQLRALGKAFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + GP+ + + + + + L E RILEYLM + + V K ++ +Y Sbjct: 121 GFIQSTITAGPLLLDLNRKHAALGDQPLALTAYEYRILEYLMLHHQQVVPKERLMEQLY- 179 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 D+ + NV+E + +LR+KL + + F P+++ R +GY + Sbjct: 180 PDDDERDPNVIEVLVGRLRRKLDSSVAFKPIETVRGMGYLFNE 222 >gi|257125818|ref|YP_003163932.1| two component transcriptional regulator, winged helix family [Leptotrichia buccalis C-1013-b] gi|257049757|gb|ACV38941.1| two component transcriptional regulator, winged helix family [Leptotrichia buccalis C-1013-b] Length = 226 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 45/224 (20%), Positives = 92/224 (41%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + D + + ++ + S DV + L G Sbjct: 3 ILVIEDEENLNDIIVKKLTMEKYGVDSCLNGTDALNYIFSTEYDVIVSDIML--PGLDGF 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA----AIY 116 E+ + IR + P++ ++ ++ + D G DD + KP E++AR+ Sbjct: 61 EILKKIRENGIKTPVLLLTARDGIEDRVKGLDYGADDYLVKPFAFDELMARIRVLLRRNP 120 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 ++N + + V + D L RE ILEY++ N+ + +++ QI Sbjct: 121 TSNSNASNVFKIANLTVNCNSHDVFRDETFIKLSTREFTILEYMIRNKERVLSREQIEQH 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I+ +D NV++ +I LR+K+ + + R +GY + Sbjct: 181 IWN-YDYEGGTNVIDVYIRYLRRKIDKGFEPKLIHTIRGIGYVL 223 >gi|167746576|ref|ZP_02418703.1| hypothetical protein ANACAC_01286 [Anaerostipes caccae DSM 14662] gi|167653536|gb|EDR97665.1| hypothetical protein ANACAC_01286 [Anaerostipes caccae DSM 14662] Length = 227 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 53/223 (23%), Positives = 94/223 (42%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D V + G E S D+ ++ L K Sbjct: 5 ILIIEDNQDVSRMLSEFLTESGYQPEAAFSGTDGLIKLREKSYDLVLLDLMLPYK--SGD 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R +R S +P+I IS + T +D G DD + KP E+ ARV + RR Sbjct: 63 QVLRELRGFSDIPVIVISAKDMVGTKIDLLKLGADDYITKPFDLGEVEARVLSNLRRQSS 122 Query: 122 SNNRAETGPIRVFSDGRDPEV---QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 S + +T R +D + +G+ L +E IL+ LM + K K ++ ++ Sbjct: 123 SKVKEQTLQYRDLILSKDAKSVLLEGQDLELTAKEYAILQLLMEHPKKVYTKANLYETVW 182 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 + ++N V++HIS LR KL+ +++ +GY + Sbjct: 183 -EDEYLGDDNAVKTHISNLRNKLKKASPLEQYIETVWGIGYRM 224 >gi|116629893|ref|YP_815065.1| DNA-binding response regulator [Lactobacillus gasseri ATCC 33323] gi|238853664|ref|ZP_04644032.1| transcriptional regulatory protein ResD [Lactobacillus gasseri 202-4] gi|282851588|ref|ZP_06260953.1| response regulator receiver domain protein [Lactobacillus gasseri 224-1] gi|311110472|ref|ZP_07711869.1| DNA-binding response regulator ResD [Lactobacillus gasseri MV-22] gi|116095475|gb|ABJ60627.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus gasseri ATCC 33323] gi|238833702|gb|EEQ25971.1| transcriptional regulatory protein ResD [Lactobacillus gasseri 202-4] gi|282557556|gb|EFB63153.1| response regulator receiver domain protein [Lactobacillus gasseri 224-1] gi|311065626|gb|EFQ45966.1| DNA-binding response regulator ResD [Lactobacillus gasseri MV-22] Length = 236 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 42/231 (18%), Positives = 96/231 (41%), Gaps = 13/231 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D V + F + ++ + + + + L + + Sbjct: 4 ILMVEDDNSVAEMMKMFFSKEQWEVDIAKDGIEAVEMFKAHPDSYDIVTLDLNLPRKDGM 63 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ + IRA S +P+I ++ S + G D+ V KP ++AR+ A+YRR + Sbjct: 64 EVAKEIRAISLSIPIIMLTARDSETDQILGLGIGADEYVTKPFSPLALIARIKALYRRSR 123 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPL----------PRRERRILEYLMANRGKRVAK 170 + + + ++ + ++ + + +E +L + + ++ Sbjct: 124 IEKDMHASNGVKYDVITKHLKISKDRREVRFDDNIVEGLTPKEFDLLYTMAQKPKQVFSR 183 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ ++G ++ EE V++HI KLR+KL K G V + +GY D Sbjct: 184 DKLLELVWG-YEFFGEERTVDAHIKKLRQKLE-KAGPQVVQTVWGVGYKFD 232 >gi|332828064|gb|EGK00786.1| hypothetical protein HMPREF9455_03060 [Dysgonomonas gadei ATCC BAA-286] Length = 221 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 41/218 (18%), Positives = 93/218 (42%), Gaps = 5/218 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + ++G S+ E L + + D+ ++ L + Sbjct: 4 ILIIEDEPGIYTFLKQGLEEEGYSISIAVDGEQGVELFRTEKPDLILLDWVL--PKMDGI 61 Query: 62 ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ + I + +P++ ++ ++Q T++ G +D K E L I+ R Sbjct: 62 DVCKAIRQEDINIPILFLTARDTVQDTIEGLQCGANDY-IKKPFSFEELLERIKIHFRNS 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + G I + S + +++ L RE +LE+L+ N+G + +I ++G+ Sbjct: 121 IEQGILTLGNISLNSQTYEVQIEASDIALTHREFELLEFLIKNKGNVCKRDEIIEKVWGI 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + + V++ I+ +RKKL + + R +GY Sbjct: 181 -NFEYDTGVIDVFINAIRKKLNLDKDNGYIKTVRGVGY 217 >gi|309775020|ref|ZP_07670035.1| DNA-binding response regulator ResD [Erysipelotrichaceae bacterium 3_1_53] gi|308917238|gb|EFP62963.1| DNA-binding response regulator ResD [Erysipelotrichaceae bacterium 3_1_53] Length = 226 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 39/225 (17%), Positives = 87/225 (38%), Gaps = 10/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ +G +E A D+ ++ Sbjct: 4 LLVVDDEERIRSMIRKYGEFEGHEIEEAVDGMDAIEKCKQAAYDLIIMDIM--MPNLDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116 + IR + P+I +S + F+ G+DD V KP +E++ R Sbjct: 62 SAVKEIRKDASTPVIMLSARGEEYDRIHGFEIGIDDYVVKPFSPKELMMRVSAILKRYHG 121 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + +++ R + + + +E +L YL+ N G + + Q+ Sbjct: 122 DQNTKKKDIYTYEGLKIDFTARKVFIDDKEQEMSPKEYVLLFYLVRNEGIALTREQLIHD 181 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G +D ++ +++HI LRK L++ + + R +GY + Sbjct: 182 VWG-YDFYGDDRTLDTHIKLLRKSLQDYS--RLIVTLRGVGYRFE 223 >gi|308068866|ref|YP_003870471.1| sensory transduction protein [Paenibacillus polymyxa E681] gi|305858145|gb|ADM69933.1| Hypothetical sensory transduction protein [Paenibacillus polymyxa E681] Length = 233 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 42/226 (18%), Positives = 93/226 (41%), Gaps = 10/226 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++IDD +++ +G + ++ S DV ++ + Sbjct: 7 LVIDDEWNMRNLLRIYLSKEGFHVTEASNGSEGLKAFRSQTHDVVVLDVM--MPDMDGWQ 64 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------AIY 116 + + +R + VP++ ++ ++ + G DD V KP+ E++AR+ + Sbjct: 65 VCKKMREIAPVPILMLTARGEVKDKVLGLGIGADDYVVKPVDPEELIARIYALLRRSSHQ 124 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 V + + ++ + R V E L ++E IL+ L + + + I Sbjct: 125 AHAVVREQKLTFPDLTIYPERRQVLVLNENIDLTQKEYDILQLLAQHPQRTFERDAIVER 184 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSID 221 ++G D E V+++HI +R+KL+ +P+ + +GY D Sbjct: 185 LWGN-DFLGENRVIDTHIKNIREKLQFVGLTYNPIKTVWGIGYKWD 229 >gi|91778359|ref|YP_553567.1| hypothetical protein Bxe_B1748a [Burkholderia xenovorans LB400] gi|296159926|ref|ZP_06842747.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] gi|91691019|gb|ABE34217.1| Hypothetical protein Bxe_B1748a [Burkholderia xenovorans LB400] gi|295889909|gb|EFG69706.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] Length = 223 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 44/220 (20%), Positives = 98/220 (44%), Gaps = 4/220 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D D + G +++ + + D+ ++ L G Sbjct: 3 ILVIEDDPKTGDYLKKGLRESGYAVDLARTGTDGLHMALENAYDLVVLDVML--PGIDGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120 E+ R +RA +P+I ++ + + + G DD + KP E++ R+ + R + Sbjct: 61 EIMRALRARRDLPVIFLTARDHVSDRIRGLELGADDYLVKPFSFTELVLRIRTLLRRGVT 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 ++ E +++ R +G PL +E +L L+ +G+ +++TQI S ++ + Sbjct: 121 RESDVFEIADLKLDVLRRKVTREGVEIPLTNKEFMLLHLLVRRQGEALSRTQIASEVWDM 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + NVV+ I +LR K+ + + + R +GY+ Sbjct: 181 -NFDSDTNVVDVAIKRLRAKVDHPFEKKLIHTVRSIGYTF 219 >gi|84683692|ref|ZP_01011595.1| two-component response regulator [Maritimibacter alkaliphilus HTCC2654] gi|84668435|gb|EAQ14902.1| two-component response regulator [Rhodobacterales bacterium HTCC2654] Length = 223 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 52/223 (23%), Positives = 93/223 (41%), Gaps = 6/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D D F ++G S++ DV ++ L L Sbjct: 3 ILVVEDDPTTADFIARGFSEEGHSVDRLADGRSALGQAMQGSYDVLVVDRML--PELDGL 60 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L + +RA P I ++ ++ + ++G DD + KP E+ ARVAA+ RR Sbjct: 61 SLVKALRAARVATPAIFLTSVGGVEDRIAGLEAGGDDYLVKPFAFGELSARVAALTRRPP 120 Query: 121 VSNNRAETGPIR--VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + R+ G L RE +LE+L+ +G+ +T + ++ Sbjct: 121 LQAEETTLKAGDLEMDLVRREVRRAGRPIDLLPREFALLEHLLRRKGRVQTRTMLLENVW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + NVVE+HIS+LR K+ + + + R GY ID Sbjct: 181 DIH-FDPGTNVVETHISRLRAKVDKPFDHELIRTVRGAGYRID 222 >gi|257467880|ref|ZP_05631976.1| DNA-binding response regulator [Fusobacterium ulcerans ATCC 49185] gi|317062169|ref|ZP_07926654.1| DNA-binding response regulator mtrA [Fusobacterium ulcerans ATCC 49185] gi|313687845|gb|EFS24680.1| DNA-binding response regulator mtrA [Fusobacterium ulcerans ATCC 49185] Length = 226 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 31/225 (13%), Positives = 80/225 (35%), Gaps = 7/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D +++ +G ++ + L + D+ ++ L G+ Sbjct: 3 ILVVEDDKEIQELITYFLTKEGYEVDRASDGLEGLKLLKENKNDLVVLDLMLPNLDGKNF 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGV---DDVVNKPIHHREILARVAAIYR 117 ++ R I + P+I + + + + + Sbjct: 63 TKIVRDISSEYGEPVIIMLTAKTEIEDVLDGLEIGADDYMKKPFDPRELVLRIKKFLKTT 122 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 ++ N + I + GE L ++E +L L+ NR + + +I + Sbjct: 123 DREIKNEKYRFKDIEIDESRHMVTANGEEVELSKKEYDLLLLLIKNRDLVITRERILDKV 182 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + + + V+ +ISKLR K+ G + + + +GY ++ Sbjct: 183 W-NSNYYTGDRTVDVYISKLRDKIPELSG--CIKTVKGVGYKLEE 224 >gi|210611403|ref|ZP_03288897.1| hypothetical protein CLONEX_01087 [Clostridium nexile DSM 1787] gi|210151995|gb|EEA83002.1| hypothetical protein CLONEX_01087 [Clostridium nexile DSM 1787] Length = 217 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 44/220 (20%), Positives = 102/220 (46%), Gaps = 7/220 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 + ++D ++++G + G ++ +S D++ + + L Sbjct: 3 ILTVEDDNMIREGISEYLSEFGYTVIQAKDGREALSKFNS---DINLVILDIQIPFINGL 59 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IR S +P++ ++ + + +D F + VD V KP + AR+ ++ ++ Sbjct: 60 EVLKEIRKKSNLPILILTAFSDEEYKIDAFTNLVDGYVEKPFSLPVLKARIDSLIKKNYG 119 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + E + V + ++ GE + +E +L+ L+ N G+ + + QI ++ Sbjct: 120 HIEKFEYKDLSVNFNSYTAKINGEEIDVNAKELEVLKCLLDNSGQVLTRMQIIDYVWKDS 179 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +E + V++ +I +LRKKLR D + + R +GY ++ Sbjct: 180 EEPPYDRVIDVYIKELRKKLRL----DCITTIRNVGYKLE 215 >gi|163942574|ref|YP_001647458.1| two component transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|229135685|ref|ZP_04264462.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196] gi|163864771|gb|ABY45830.1| two component transcriptional regulator, winged helix family [Bacillus weihenstephanensis KBAB4] gi|228647783|gb|EEL03841.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196] Length = 231 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 42/226 (18%), Positives = 91/226 (40%), Gaps = 9/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G + + ++ + + ++ L Sbjct: 4 ILIVEDDPNISSLLQSHIQKYGYDAVVAENFDDIMESFNAVKPHLVLLDVNL--PKFDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 R IR S P+I IS + +SG DD + KP H+ ++A++ RR+ Sbjct: 62 YWCRQIRHESTCPIIFISARAGEMEQIMAIESGADDYITKPFHYDVVMAKIKGQLRRIYG 121 Query: 122 SNNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + I F + + E L ++E + E L++ + ++ + + Sbjct: 122 DYAPNISERIVEVEGLKLFPERPEIHFGSEQVLLTKKEAILAEMLLSKFPRTASREDLLA 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 A++ + VEEN + +I++LRKK + +++ R LGY + Sbjct: 182 ALWD-DESFVEENTLNVNITRLRKKFNELGIENSIETVRGLGYRFN 226 >gi|295093907|emb|CBK82998.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Coprococcus sp. ART55/1] Length = 236 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 48/227 (21%), Positives = 88/227 (38%), Gaps = 9/227 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD ++ G + + + D+ I ++ E Sbjct: 11 LIVDDEQDIRTLLNIYLKRLGYDVVEAADGVEAVETVRADK-DIDLIVMDIMMPKLSGTE 69 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + IR S +P++ ++ + +D G DD + KP E +V A+ RR KV Sbjct: 70 ACQQIREFSSIPVLFLTAKTKEPDQNEAYDVGGDDFLAKPFTQSEFNRKVNALIRRYKVY 129 Query: 123 -------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 G I + S R GEV L +E +L +L+ +RGK + ++ Sbjct: 130 RGKSETDPKNISVGNINIDSFKRIVIKNGEVIKLTDKEYALLFFLVEHRGKPWSLEALYE 189 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221 I+ N V HI +LR+K+ + + + + GY +D Sbjct: 190 NIWQEKYLPSSSNTVMVHILRLRQKIEDNSAQPEIIRTIYGKGYQVD 236 >gi|261867820|ref|YP_003255742.1| transcriptional regulatory protein QseB [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413152|gb|ACX82523.1| transcriptional regulatory protein QseB [Aggregatibacter actinomycetemcomitans D11S-1] Length = 223 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 55/224 (24%), Positives = 98/224 (43%), Gaps = 9/224 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 +LI+D L+ +G G +++ F + SA D ++ L G V Sbjct: 3 ILLIEDDPLIGNGIQIGLTKSGFAVDWFTDGKTGLEAAQSAPYDAVVLDLTLPKMDGLDV 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119 L+ R VP++ ++ +L + G DD + KP E++AR+ A I RR Sbjct: 63 LQAWRKNGQ--DVPVLILTARDTLDERITGLQRGADDYLCKPFALAEVVARLQALIRRRY 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +N + ++ + R + + L RE ++LE M N+ + + + I +Y Sbjct: 121 GHANPIIQHSRVKFDPNQRKVFLCDQEIALTTREYKLLELFMLNKERVLTRDFIEDKLY- 179 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 +D V N +E HI LR+KL G + + +GY++ N Sbjct: 180 NWDNEVSSNALEVHIYNLRQKL----GKQFIRTVHGVGYALGKN 219 >gi|187778164|ref|ZP_02994637.1| hypothetical protein CLOSPO_01756 [Clostridium sporogenes ATCC 15579] gi|187775092|gb|EDU38894.1| hypothetical protein CLOSPO_01756 [Clostridium sporogenes ATCC 15579] Length = 228 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 51/224 (22%), Positives = 98/224 (43%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D V + A +G + + S + ++ L Sbjct: 4 ILIIEDEKRVSEVLKAYLEKEGYKVYCTTKGLEGIEIFKSIDIQLIILDLML--PDISGE 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118 E+ +IIR S V + ++ +L ++ + G D+ + KP RE+ ARV A++RR Sbjct: 62 EVCKIIRQSSDVHIFMLTAKGALNDRIEGLNIGADEYLIKPFSPRELTARVNALFRRLSA 121 Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 SN + G + + D R +V G+ + E IL L++N+GK +++ Q+ I Sbjct: 122 DNSTSNLIFDDGKLSIDYDKRVVKVNGKEVSITPNEFDILYALVSNKGKVLSREQLIDKI 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 +G+ D + ++ HI +RKK+ + + +GY Sbjct: 182 FGI-DFNGYDRTIDVHIKNIRKKIEEDTKNPKYIVTVMKVGYKF 224 >gi|254253958|ref|ZP_04947275.1| Response regulator [Burkholderia dolosa AUO158] gi|124898603|gb|EAY70446.1| Response regulator [Burkholderia dolosa AUO158] Length = 393 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 50/220 (22%), Positives = 94/220 (42%), Gaps = 4/220 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D V + + ++G ++ E W DV ++ L Sbjct: 166 LIVEDEPKVVEYLKSGLTEEGWVVDTALDGEDGAWKAVEFDYDVVVLDVML--PKLDGFG 223 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +RA Q P+I ++ + + G DD + KP E++ R+ A+ RR +V Sbjct: 224 VLRALRAQKQTPVIMLTARDRVDDRVRGLRGGADDYLTKPFSFLELIERLRALTRRARVQ 283 Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + RV GR G L +E ++L L G+ ++KT I ++ + Sbjct: 284 ESTLISIGDLRVDLIGRRATRDGTRLDLTAQEFQLLGVLARRSGEVLSKTTIAELVWDV- 342 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + NVVE+ I +LR KL + + R +GY ++ Sbjct: 343 NFDSNANVVETAIKRLRAKLDGPFADKLLHTIRGMGYVLE 382 >gi|148654376|ref|YP_001274581.1| two component transcriptional regulator [Roseiflexus sp. RS-1] gi|148566486|gb|ABQ88631.1| two component transcriptional regulator, winged helix family [Roseiflexus sp. RS-1] Length = 243 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 44/226 (19%), Positives = 94/226 (41%), Gaps = 9/226 (3%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + +++DD + + +G + ++ DV ++ Sbjct: 8 LILVVDDEPRMVNFMRMNLELEGCRVISASNGREALEKVRDEMPDVVLLDIM--MPVMDG 65 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E R +R S VP++ ++ + + + G DD + KP HRE+++R+ A+ RR Sbjct: 66 FETLRRLRQASSVPVLVLTAKDDEEDRIKGLELGADDYIGKPFSHRELVSRIRAVLRRHY 125 Query: 121 VSNNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + +++ R+ V GE L E R+L +L+ N G + Q+ S Sbjct: 126 TPPPAPQTLVKVDDRLQIDFARREVLVNGERVNLRPTEYRLLYHLVQNAGYVMTHEQLLS 185 Query: 176 AIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220 ++G E + + +++ LR+K+ + + ++R +GY Sbjct: 186 KVWGPEYRD-ETHYLRLYVTYLRQKIEEDPANPKYILTERGIGYRF 230 >gi|28868517|ref|NP_791136.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|213968347|ref|ZP_03396491.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. tomato T1] gi|301383478|ref|ZP_07231896.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. tomato Max13] gi|302129901|ref|ZP_07255891.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28851755|gb|AAO54831.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|213926985|gb|EEB60536.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. tomato T1] gi|331015193|gb|EGH95249.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 225 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 45/220 (20%), Positives = 85/220 (38%), Gaps = 4/220 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++I+D D + G +++ L + ++ L G Sbjct: 4 LIIEDEEKTADYLRRGLTEQGYTVDVARDGIEGLHLALENDHAIVILDVML--PGLDGFG 61 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLKV 121 + R +RA Q P+I ++ + + G DD + KP E++AR+ A R Sbjct: 62 VLRALRARKQTPVIMLTAREQVDDRIRGLREGADDYLGKPFSFLELVARLQALTRRSGGH 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + + R G L +E +L L +G ++KT I ++ + Sbjct: 122 EPLQITIADLWIDLISRKATRAGARLDLTAKEFSLLSVLARRQGDILSKTSIAEMVWDI- 180 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + NVVE I +LR KL + + R +GY ++ Sbjct: 181 NFDSDTNVVEVAIKRLRAKLDGPHEHKLLHTIRGMGYVLE 220 >gi|87310339|ref|ZP_01092469.1| phosphate regulon response regulator PhoB [Blastopirellula marina DSM 3645] gi|87286838|gb|EAQ78742.1| phosphate regulon response regulator PhoB [Blastopirellula marina DSM 3645] Length = 247 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 43/225 (19%), Positives = 81/225 (36%), Gaps = 12/225 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + D G + + D+ ++ L E Sbjct: 7 LIVEDDRSLADVLAYNVRQAGYEVISAYDGQDGLTQAQIKTPDLVILDLML--PVVDGHE 64 Query: 63 LPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAI 115 + R +RA + ++ ++ L F G DD V KP + I A V Sbjct: 65 VCRRLRADASTKDIMILMLTAKSEESDQLIGFSLGADDYVTKPFSVKVLLERIKALVRRK 124 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 ++ + I + G L R E R+LE L G+ ++++ Sbjct: 125 RGADNSLDDVIASQGITIDRRRHRATASGRPLQLTRSEFRLLETLTRQPGRVFERSELID 184 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 A G D V E ++ HI LR+K+ + + +++ R +GY Sbjct: 185 AALGE-DTVVMERTIDVHIRALRRKMAD--EAELIETVRGVGYRF 226 >gi|330960611|gb|EGH60871.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 225 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 54/223 (24%), Positives = 106/223 (47%), Gaps = 5/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D AL++ + G +E + E + + D++ I+ L G L Sbjct: 3 LLVVEDEALLRHNLRTRLTEAGHVVEAVANAEEALYQVAQFNHDLAVIDLGL--PGIGGL 60 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119 +L R +R P++ ++ + Q ++ +G DD V KP E+ AR+ A + R Sbjct: 61 DLIRQLRTLGKAFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + GP+ + + + + + L E RILEYLM + + V K ++ +Y Sbjct: 121 GFIQSTITAGPLLLDLNRKHAALAEQPLALTAYEYRILEYLMLHHQQVVPKERLMEQLY- 179 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 D+ + NV+E + +LR+KL + + F P+++ R +GY + Sbjct: 180 PDDDERDPNVIEVLVGRLRRKLDSSVAFKPIETVRGMGYLFNE 222 >gi|297625346|ref|YP_003687109.1| Response regulator, two-component system [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296921111|emb|CBL55658.1| Response regulator, two-component system [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 239 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 46/225 (20%), Positives = 95/225 (42%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + F +G E V ++ L + Sbjct: 14 ILIVEDEHSLATVMAGYFTRNGYRAEVVGDGLEAVAAARRLDPSVVILDLGL--PSLDGV 71 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR S ++ ++ L G DD + KP R ++ARV A+ RR + Sbjct: 72 EVARRIRTFSDCYILMLTARADEVDELIGLSVGADDYLTKPFSPRLLIARVQAMQRRPRS 131 Query: 122 SNNRAETGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + P+R + R+ ++ L R E +L +L N + +++ ++ A Sbjct: 132 AITPPDEQPLRIGELTIDPAAREVQLGTREIALTRTEFDLLAHLARNPRRAISRDELIEA 191 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++G+ + ++ +V++HI LRKKL + +++ R +GY + Sbjct: 192 VWGVG-WSGDDQLVDTHIGHLRKKLGDSAANARFIETVRGVGYRM 235 >gi|38234503|ref|NP_940270.1| putative two component system response regulator protein [Corynebacterium diphtheriae NCTC 13129] gi|38200766|emb|CAE50470.1| Putative two component system response regulator protein [Corynebacterium diphtheriae] Length = 236 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 50/224 (22%), Positives = 96/224 (42%), Gaps = 10/224 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + G +E S S + D ++ G E Sbjct: 12 LVVDDEPNIVELLKVSLKFQGFEVETAQSGIEALEKARSFQPDAFILDVM--MPGMDGYE 69 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L +RA P++ ++ +++ + G DD V KP E++ R+ I RR Sbjct: 70 LLPKLRADGFEGPVLYLTAKDAVEHRIHGLTIGADDYVTKPFSLEEVITRLRVILRRGLR 129 Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 ++ ++ + D + G+V L E +L YLM N ++K++I + Sbjct: 130 HDDVDDSATLVYADLTLNDDTHEVTKAGQVVELSPTEFNLLRYLMLNAEVVLSKSKILNN 189 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +D + NVVES+IS LR+K+ + + + R +GY + Sbjct: 190 VW-HYDFGGDGNVVESYISYLRRKV-DTQEPALIQTVRGVGYVL 231 >gi|260587106|ref|ZP_05853019.1| phosphate regulon response regulator PhoB [Blautia hansenii DSM 20583] gi|260542596|gb|EEX23165.1| phosphate regulon response regulator PhoB [Blautia hansenii DSM 20583] Length = 234 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 91/224 (40%), Gaps = 8/224 (3%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEK 59 M L++D +++ + G+ EGF D+ ++ L G + Sbjct: 9 MIYLVEDDESIRELLVYTLNGQGLVAEGFAYPSDFWHAMEKKIPDLVLLDIMLPEEDGLE 68 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAI 115 +L+ R + +P+ ++ S + D G DD + KP E+++RV Sbjct: 69 ILQKLRKKKETKNIPIAMLTAKGSEYDVVKGLDGGADDYIPKPFRMMELVSRVKALLRRG 128 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + G + V +V+GE L +E +L ++N G ++ Q+ Sbjct: 129 GQEQPQDDEEYVLGELYVSKKRHLVKVKGEEVTLTMKEFELLLLFLSNPGIVFSRAQLLD 188 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 I+G + E V+ HI LR+KL+ +++ R +GY Sbjct: 189 KIWG-YQFDGESRTVDVHIRTLRQKLKEAG--RYIETVRGIGYK 229 >gi|225412440|ref|ZP_03761629.1| hypothetical protein CLOSTASPAR_05663 [Clostridium asparagiforme DSM 15981] gi|225042038|gb|EEG52284.1| hypothetical protein CLOSTASPAR_05663 [Clostridium asparagiforme DSM 15981] Length = 267 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 39/223 (17%), Positives = 80/223 (35%), Gaps = 10/223 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS---AREDVSAIEAFLIGKGE 58 ++++D ++ D G L D++ ++ L G Sbjct: 48 ILVVEDERIISDLICMNLEAAGYETRAVYDGNETAGLLREQGQEAADLALVDIML--PGM 105 Query: 59 KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 L + +P+I ++ + + + G +D + KP E+L R+ + R Sbjct: 106 DGFALM-ELFQGKHIPVIYLTAKADVTSKVRGLKLGAEDYIVKPFEVLELLVRMEKVLER 164 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 G + V + G L E +L + NR + + ++ ++ Sbjct: 165 TGKMKPELCYGDLVVDLNMHRVWEGGAEVDLKPMEFGLLTVFLKNRNVVLGRDRLLDLVW 224 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 G D E V+ H++KLRKKL++ + + GY + Sbjct: 225 G-SDFYGETRTVDVHVAKLRKKLKSAGA---IKTIPKAGYMFE 263 >gi|254387605|ref|ZP_05002844.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294815008|ref|ZP_06773651.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|326443376|ref|ZP_08218110.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|176045579|gb|ACB72855.1| putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|197701331|gb|EDY47143.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294327607|gb|EFG09250.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 270 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 43/224 (19%), Positives = 90/224 (40%), Gaps = 9/224 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A + + +G + R D ++ L L Sbjct: 45 LLVVDDEAPLAELLSMALRYEGWEVRSAGDGSTAVRTAREFRPDAVVLDVML--PDMDGL 102 Query: 62 ELP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR----VAAIY 116 + R+ R +VP++ ++ +++ + +G DD V KP E++ R + Sbjct: 103 TVLARLRRERPEVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVVRLRGLLRRSG 162 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + G + + + + G+ L E +L LM + + ++K QI Sbjct: 163 AVSARPDTVLVVGDLTLDEESHEVSRGGQAIRLTATEFELLRCLMRSPRRVLSKAQILDR 222 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +D + NVVE +IS LR+K+ + + ++R GY + Sbjct: 223 VWS-YDFGGQANVVEIYISYLRRKI-DAGRAPMIHTRRGAGYLL 264 >gi|332359038|gb|EGJ36859.1| DNA-binding response regulator [Streptococcus sanguinis SK49] Length = 238 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 40/220 (18%), Positives = 85/220 (38%), Gaps = 6/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D +++ + G + + + ++ L Sbjct: 14 ILLVEDDPVIRQMIKKMLEQWGFQVVAVEDFMDVLTVFVREEPHLVLMDIGLPL--FNGY 71 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 + IR S VP++ +S + + G DD V KP + LA+V Sbjct: 72 HWCQEIRKISTVPIMFLSSRDQSMDIVMAINMGADDYVTKPFDNNVFLAKVQGLLRRSYE 131 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + E + + D G+V L + E +IL L + VA+ + ++ Sbjct: 132 FGNDQSLLEHQGVILNLKSTDLVFDGKVVTLTKNEFQILRVLFEHADGIVARDDLMKELW 191 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 D +++N + ++++LRKKL + +++K+ +GY Sbjct: 192 -NSDFFIDDNTLSVNVARLRKKLEEHGLKNFIETKKGIGY 230 >gi|309790461|ref|ZP_07685022.1| two component transcriptional regulator [Oscillochloris trichoides DG6] gi|308227509|gb|EFO81176.1| two component transcriptional regulator [Oscillochloris trichoides DG6] Length = 226 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 44/222 (19%), Positives = 92/222 (41%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ +G ++ L R D+ ++ + Sbjct: 6 ILVVDDDNGLRELIRINLEHEGYTVIQAADGLQCLELVRDQRPDLVILDVM--MPEMDGV 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119 E +R S +P++ ++ + + D G DD + KP + E+ AR+ A Sbjct: 64 EACTKLREFSLLPVLMLTAKVQSEDVIQGLDCGADDYLLKPFNMNELSARIRALLRRVPP 123 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 A G I++ R+ V+GEV L E ++L L GK VA + A++G Sbjct: 124 VYRPLHAGEGQIQIDQQKREVLVRGEVVDLTPTEYQLLLILTEQAGKVVAHDTLLRAVWG 183 Query: 180 LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + + + + ++ +I LR+K+ + + + +GY + Sbjct: 184 Q-EYSRDNDYLKVYIWHLRRKIEQDPRNPSLLLTDWGVGYRL 224 >gi|307293657|ref|ZP_07573501.1| two component transcriptional regulator, winged helix family [Sphingobium chlorophenolicum L-1] gi|306879808|gb|EFN11025.1| two component transcriptional regulator, winged helix family [Sphingobium chlorophenolicum L-1] Length = 232 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 45/227 (19%), Positives = 91/227 (40%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D A G+ G +++ ++ +L S V ++ + G Sbjct: 5 ILVVEDDADTAAYVAKGMGEAGFTVDRADNGRDGLFLASDGSYGVIILDRMMPAMDGMAT 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117 L+ R A + P+I +S + + ++ SG DD + KP E+LARV Sbjct: 65 LKALRA--AGIETPVIILSALGTPEDRVEGLTSGADDYLVKPFAFAELLARVQLLLRRGG 122 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + R + L RE R+LE+ + + + V +T + + Sbjct: 123 SGSAVVTHLRHDDLEMDLLSRRVKRGSRTVDLQPREFRLLEFFLRHPDQVVTRTMLLEGV 182 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGF----DPVDSKRFLGYSI 220 + + NV++ H+S+LR+KL + + R +GY + Sbjct: 183 WD-YHFDPGTNVIDVHVSRLRRKLDEGGEAGGSRPLLHTVRGMGYRL 228 >gi|293376504|ref|ZP_06622732.1| putative regulatory protein VanR [Turicibacter sanguinis PC909] gi|292644730|gb|EFF62812.1| putative regulatory protein VanR [Turicibacter sanguinis PC909] Length = 233 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 40/227 (17%), Positives = 84/227 (37%), Gaps = 13/227 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D+G + + ++S + ++ L Sbjct: 4 ILIVDDDQAIAYLIADALEDEGFEIIICHDGNEALEKI-EESCEISLMILDIMMPKMDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR--------EILARVA 113 EL R +R + P+I +S TL + G DD + KP + Sbjct: 63 ELCRRVRDQLKAPIIFVSAKSRTLDTLLGLEMGADDYICKPFVVEELVARVKAHLRREKR 122 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 ++ + +++ + + L RE ++ +Y + N G+ +++ QI Sbjct: 123 HQMNAIESLQDVLPFDHFKLYPNRYEVFKDEVNIDLSPREFQLFQYFVENSGRVLSREQI 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 F AI+G + + V +I LR+KL + + +GY + Sbjct: 183 FDAIWG--ENYGDIGTVAVNIKNLRQKL--DPDNQYIKTIWGVGYKL 225 >gi|226308089|ref|YP_002768049.1| two-component response regulator CseB [Rhodococcus erythropolis PR4] gi|226187206|dbj|BAH35310.1| putative two-component response regulator CseB [Rhodococcus erythropolis PR4] Length = 225 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 42/225 (18%), Positives = 94/225 (41%), Gaps = 11/225 (4%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + +L++D A++++ +G + + L A+ D++ ++ L Sbjct: 5 LILLVEDDAVIREATQLNLERNGFRVITASGGLTGMDLAVDAKPDIAVLDVML--PDLNG 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH----HREILARVAAIY 116 + L R IR VP+I +S + ++G DD V KP I + + + Sbjct: 63 ISLCRRIREELSVPVIMLSARDDPVDIVLGLEAGADDYVTKPFDSGVLVARIRSVLRRVE 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + G + + + G L E ++L +++ K +++++ S Sbjct: 123 SHSGTEKDIVTLGDLEIDRELVTVTRSGAEVALTPTEMKLLLIMVSVPRKVWSRSELLSD 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ +D + +V+ HI +LR K+ G + + + R GY++D Sbjct: 183 VWD-YDWGGDTRIVDVHIQRLRTKI----GSEQIRTVRGFGYTMD 222 >gi|167629619|ref|YP_001680118.1| transcriptional regulator [Heliobacterium modesticaldum Ice1] gi|167592359|gb|ABZ84107.1| transcriptional regulator [Heliobacterium modesticaldum Ice1] Length = 223 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 44/224 (19%), Positives = 98/224 (43%), Gaps = 6/224 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L +D + + +G ++ + ++ D+ ++ + Sbjct: 3 ILLAEDDQRLGKLIDHMLRREGHDVDWVQRGDDAYHYAKASHYDLLVLDWM--MPAMDGV 60 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L R +R Q P++ ++ +++ + D+G DD + KP E++AR+ A+ RR K Sbjct: 61 ILCRQLRQEGLQCPILMLTAKDAVEDRVQGLDAGADDYLVKPFASAELMARLRALSRRGK 120 Query: 121 VSNNRAETGPIRV--FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + + G+ L RE +L+ L+ N+G+ + + I ++ Sbjct: 121 IPLQEEIVQVADLLLNRNRHSVTRGGKEITLTSREFALLDLLVQNKGQVLPRELIMERVW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 GL D V +N ++++I LRKK+ + + R +GY+++ Sbjct: 181 GL-DADVTDNTLDAYIRLLRKKIEPPGAAKLIHNIRGVGYTLEE 223 >gi|148658560|ref|YP_001278765.1| two component transcriptional regulator [Roseiflexus sp. RS-1] gi|148570670|gb|ABQ92815.1| two component transcriptional regulator, winged helix family [Roseiflexus sp. RS-1] Length = 226 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 54/226 (23%), Positives = 86/226 (38%), Gaps = 9/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD + + G + D+ ++ Sbjct: 3 ILVADDDLPNVKLTAFVLEEAGYKVIKAYDGPSILQSVEQYNPDLILLDVM--MPKTNGF 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R IR S VP+I +S LQ + G DD + KP E+LARV A+ RR Sbjct: 61 DVCRQIRRTSDVPIIFLSARSQLQDRVTGLQIGGDDYLVKPFEPSELLARVEAVLRRRNS 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQG-----EVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 E + + L E R+L YLM N G+ + +QI S Sbjct: 121 DMLNPSARLSLGDLTLDPVEHKVLFADGRIVELTPLEFRLLYYLMKNAGRVLNTSQILSK 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 ++G +D E N+V +I +LR K+ + V + R LGY + Sbjct: 181 VWG-YDYEGESNLVAVYIRRLRTKIERDPEHPRHVLTVRNLGYKFE 225 >gi|119714578|ref|YP_921543.1| response regulator receiver [Nocardioides sp. JS614] gi|119535239|gb|ABL79856.1| response regulator receiver [Nocardioides sp. JS614] Length = 233 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 51/226 (22%), Positives = 94/226 (41%), Gaps = 11/226 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + + DG ++ + DV ++ L G +E Sbjct: 7 LVVEDEPELARLVGSYLERDGFAVTIVHDGLEAVARSREVDPDVVVLDLGL--PGLDGVE 64 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +R S ++ ++ TL G DD + KP RE++ARV A+ RR + Sbjct: 65 VCRRLRTFSDGYVVMLTARSDEVDTLIGLSVGADDYLTKPFSPRELVARVQAMLRRPRPL 124 Query: 123 NNRA-------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + G + + GRD ++ PL R E +L L G ++ Q+ Sbjct: 125 GHMDADAGEALSFGDLTIELAGRDVWLEDRAVPLTRTEFDLLATLAQRPGMAFSRRQLID 184 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220 A++G +E++V+ H+ LR KL + V + R +GY + Sbjct: 185 AVWG-PAWVGDEHLVDVHVGHLRHKLGDSAAEGRYVRTVRGIGYRM 229 >gi|329907282|ref|ZP_08274600.1| Two-component response regulator [Oxalobacteraceae bacterium IMCC9480] gi|327547047|gb|EGF31933.1| Two-component response regulator [Oxalobacteraceae bacterium IMCC9480] Length = 242 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 47/229 (20%), Positives = 88/229 (38%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ +G ++ + +AR D+ ++ L GE L Sbjct: 7 ILVVDDDRDIRTLLADYLDGNGFRTFTASNGTEMRKMLDTARIDLVVLDLTL--PGEDGL 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R +RA S +P+I ++ + + G DD + KP RE+ AR+ ++ RR Sbjct: 65 TLCRNLRAQSSLPVIMLTARGEPLDRILGLEMGADDYLAKPFEPRELFARIRSVLRRTNA 124 Query: 122 SNNRAETGPIRVF---------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 G V L E R+L+ + + + + + Q Sbjct: 125 LPPNMALSEAHSMLFDTWRLDLMARHLVMEDGTVVALSGAEFRLLKVFLEHPNRVLNRDQ 184 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 + G D + V+ IS+LR+KL + + + R GY + Sbjct: 185 LLELTRGR-DADPFDRSVDIQISRLRQKLGDDARTPRIIKTVRNEGYVL 232 >gi|229196226|ref|ZP_04322974.1| Two-component response regulator [Bacillus cereus m1293] gi|228587080|gb|EEK45150.1| Two-component response regulator [Bacillus cereus m1293] Length = 226 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 43/223 (19%), Positives = 90/223 (40%), Gaps = 6/223 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D ++++ F DG + + L + ++S + ++ Sbjct: 5 LIVEDEQIIRETVAHYFSHDGYEVITAEDGQIGLDLFAEQEHNISLVILDIMLPLMDGWS 64 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRRL 119 + R IR +S VP+I ++ TL F+ G DD V KP R+ + Sbjct: 65 VCRRIRKNSNVPIILLTARSDEDDTLLGFELGADDYVTKPFKPSILLARAKRLFKDTNQQ 124 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + IR+ R + G+ E IL LM ++ + +++ Q+ + I+G Sbjct: 125 VQYQDCINLCGIRLDKSARSVSIDGQKIDFTHTEYEILHSLMQHKEQVLSREQLITNIWG 184 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D ++ + +H+ +R KL K + + GY + Sbjct: 185 -YDYDGDDKTLTAHMRNVRLKLGEK--AKHIITVVRTGYKFEV 224 >gi|226310130|ref|YP_002770024.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226093078|dbj|BAH41520.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 232 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 41/225 (18%), Positives = 91/225 (40%), Gaps = 10/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + G + + + +R D+ ++ L Sbjct: 4 IMIVEDDPKINQLLQEQLEKYGFQTVNVEHFDRVMEVFTQSRPDLVLLDVNL--PKFDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 R +R S P++ IS S + ++G DD + KP + +LA++ + RR Sbjct: 62 YWCRQMRQESNCPILFISARESKMDQVMALENGADDYITKPFDYDVVLAKIRSQLRRAYG 121 Query: 122 SNNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 E F + + + L ++E +LE LM + V++ ++ Sbjct: 122 QYAPQEGERTVEVAGLKLFLERMELSMYETKIELSKKEALLLEALMNQHPRVVSRERLLE 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ ++ V+EN + +I+++R KL++ V++ R GY + Sbjct: 182 KLWD--EQFVDENTLNVYITRVRSKLKDLGLEGAVETVRGSGYRL 224 >gi|254507166|ref|ZP_05119303.1| two-component response regulator protein [Vibrio parahaemolyticus 16] gi|219549876|gb|EED26864.1| two-component response regulator protein [Vibrio parahaemolyticus 16] Length = 224 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 42/223 (18%), Positives = 93/223 (41%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++I+D ++ + G +++ + S D+ ++ L G KV Sbjct: 3 LLIIEDDQTTREFVAKGLQEHGYTVDQAEDGNSGLMMALSGEYDLVVLDRMLPYLDGMKV 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L + +P++ +S S++ +D +G DD + KP E++ARV I R + Sbjct: 63 LSAIKATLE--HLPVLILSAMDSVEDRVDGLQAGSDDYLIKPFALAELIARVDIIIHRNQ 120 Query: 121 VSNNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 T L +E +++++ + + + V++ ++F +I Sbjct: 121 RQTKPHSTLSYDCLTVDLRAHRVTCNNTELQLQPKEFQLIQHFIEHSEQVVSRMRLFESI 180 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + + NV++ H++ LR+KL D + + R GY + Sbjct: 181 WS-YHFDPKTNVIDVHVANLRRKLEEAGCRDLLHTVRGAGYVL 222 >gi|206602093|gb|EDZ38575.1| Putative two component transcriptional regulator, winged helix family [Leptospirillum sp. Group II '5-way CG'] Length = 231 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 39/224 (17%), Positives = 83/224 (37%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++I+D A + F + + + L + D+ ++ L G G + Sbjct: 5 ILVIEDEADIVTLLKHYFLQEHFEVTTTGNGLEGLSLARTLHPDLIVLDLMLPGLDGLSI 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIY 116 + S +P++ ++ + + G DD + KP + + I A + Sbjct: 65 NRSLKKDPLTSGIPVVILTAKSDETDRIVGLELGADDYIVKPFNPKELLARIKAILRRTE 124 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + R + + + + L +E +L L+ N G+ + + + Sbjct: 125 QEPAQRPERFSAAGVVLDIARHEARAGDTLLDLTAKEFSLLLALVKNSGRVLDRQMLLDL 184 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G D + V+ HI +LRKKL D V + + +GY Sbjct: 185 VWGA-DYEGTDRTVDVHIRRLRKKLGAY--QDRVQTVKQIGYKF 225 >gi|167757440|ref|ZP_02429567.1| hypothetical protein CLORAM_02990 [Clostridium ramosum DSM 1402] gi|167703615|gb|EDS18194.1| hypothetical protein CLORAM_02990 [Clostridium ramosum DSM 1402] Length = 219 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 49/221 (22%), Positives = 91/221 (41%), Gaps = 9/221 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + D G + E ++ ++ L + Sbjct: 5 ILIIEDEKNMSDLLKLELTHAGYCCDQAYDGEVGLKKALEQEYELILLDLML--PRINGI 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R Q P+I ++ + ++ G DD + KP E+LAR+ A+ RR+ Sbjct: 63 EVCRRLREIKQTPVIMLTARDEVMDKVNGLQVGADDYLAKPFAMEELLARINALLRRMNF 122 Query: 122 SNN--RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 G +++ + L E +L L+ N G V++ +I ++G Sbjct: 123 QKALLEYSYGEVKIDPSKHKVFFKDNEVNLTTTEFDLLSLLVQNGGDVVSRNKILDQVWG 182 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +DE V NVVE +I LR K+ G +++ R +GY + Sbjct: 183 -YDEDVSTNVVEVYIRYLRNKI---PGIK-IETVRGVGYRL 218 >gi|167751876|ref|ZP_02424003.1| hypothetical protein ALIPUT_00118 [Alistipes putredinis DSM 17216] gi|167660117|gb|EDS04247.1| hypothetical protein ALIPUT_00118 [Alistipes putredinis DSM 17216] Length = 217 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 40/221 (18%), Positives = 93/221 (42%), Gaps = 10/221 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 +LIDD + + G + + ++ R + ++ + G + Sbjct: 5 ILLIDDEDDILEFIRYNLTKAGYEVYTARNGAEGLQQAAAHRPHLILLDVMMPTMDGIET 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 R A + ++ +S + L F +G DD ++KPI + +++R+ + + Sbjct: 65 CRALRCDPALKETMVVFLSALGEEEQQLAGFGAGADDYISKPIKPKLLISRI----QAIL 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + + + GE LPR+E +L L ++ GK ++ +I+S I+G Sbjct: 121 KRVAADKPASLVIDRERHLVIRNGERIELPRKEFALLALLASSPGKLFSREEIYSRIWGD 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 V + ++ H+ K+R+K+ + + + + +GY + Sbjct: 181 S-VVVGDRTIDVHVRKIRQKIGD----GHISTVKGMGYKYE 216 >gi|87119735|ref|ZP_01075632.1| two-component response regulator [Marinomonas sp. MED121] gi|86165211|gb|EAQ66479.1| two-component response regulator [Marinomonas sp. MED121] Length = 229 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 41/228 (17%), Positives = 90/228 (39%), Gaps = 10/228 (4%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + +++D + + D ++ + ++ D+ ++ L G+ Sbjct: 5 LIYIVEDEIKIAQILVDYLVKDNYDVKVLYRGDEAVERILESKPDLVILDVML--PGKSG 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------A 114 + + + +R HS VP++ ++ L G DD V KP RE++ARV Sbjct: 63 INICKELREHSNVPIMMLTARIDEMDRLVGLKVGADDYVCKPFLPREVVARVNAILRRVN 122 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + ++ I + + G+ L E R+L+ +++ + ++ + Sbjct: 123 RIDDEEEKSSELVYRSITLDLECFKCHANGQYVELTPVEYRLLQIMVSRPKRVFSRESLM 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSID 221 Y D V + ++SH+ LRKKL + + S +GY ++ Sbjct: 183 QKCY-KDDRIVSDRTIDSHVKNLRKKLAAADPSEEIIHSIYGVGYKVE 229 >gi|325690690|gb|EGD32691.1| DNA-binding response regulator [Streptococcus sanguinis SK115] Length = 238 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 40/220 (18%), Positives = 85/220 (38%), Gaps = 6/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D +++ + G + + + ++ L Sbjct: 14 ILLVEDDPVIRQMVKKMLEQWGFQVVAVEDFMDVLTVFVREEPHLVLMDIGLPL--FNGY 71 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 + IR S VP++ +S + + G DD V KP + LA+V Sbjct: 72 HWCQEIRKISTVPIMFLSSRDQSMDIVMAINMGADDYVTKPFDNNVFLAKVQGLLRRSYE 131 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + E + + D G+V L + E +IL L + VA+ + ++ Sbjct: 132 FGNDQSLLEHQGVILNLKSTDLVFDGKVVTLTKNEFQILRVLFEHSDGIVARDDLMKELW 191 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 D +++N + ++++LRKKL + +++K+ +GY Sbjct: 192 -NSDFFIDDNTLSVNVARLRKKLEEHGLKNFIETKKGIGY 230 >gi|158424377|ref|YP_001525669.1| IMP dehydrogenase [Azorhizobium caulinodans ORS 571] gi|158331266|dbj|BAF88751.1| IMP dehydrogenase [Azorhizobium caulinodans ORS 571] Length = 240 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 42/225 (18%), Positives = 85/225 (37%), Gaps = 10/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD ++ G S E +S+R D+ ++ L L+ Sbjct: 8 LVVDDDQEIRKLLARYLLSQGFRTTVAASGREMEECLASSRFDMVVLDLML--PDASGLD 65 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAAI 115 L R +RA S++P+I ++ + + G DD + KP + RE++ R Sbjct: 66 LCRALRARSRLPIILLTALKEDVDRIIGLEIGADDYLGKPFNPRELVARIRAVLRRATER 125 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 G + G L E +L + G+ +++ Q+ Sbjct: 126 EEPAAPGAIYRFAGFTADQGTRQVTSETGAEVALTAAEFDLLVAFLERPGRILSRDQLLD 185 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G + + ++ +S+LR+KL + F + ++R GY + Sbjct: 186 ITQGR-EAGPFDRSIDVLVSRLRRKLGDAGSFQILKTQRNGGYQL 229 >gi|295398894|ref|ZP_06808876.1| two component transcriptional regulator, winged helix family [Geobacillus thermoglucosidasius C56-YS93] gi|312110499|ref|YP_003988815.1| transcriptional regulator [Geobacillus sp. Y4.1MC1] gi|294978360|gb|EFG53956.1| two component transcriptional regulator, winged helix family [Geobacillus thermoglucosidasius C56-YS93] gi|311215600|gb|ADP74204.1| two component transcriptional regulator, winged helix family [Geobacillus sp. Y4.1MC1] Length = 224 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 48/220 (21%), Positives = 84/220 (38%), Gaps = 5/220 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++I+D A + +G + + L S + ++ L +E Sbjct: 6 LIIEDEANLARFIELDLTHEGYEVRVSHDGREGLELALSEEWGLILLDVML--PSLNGME 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRLK 120 + R IRA Q P+I I+ S+ + D+G DD + KP E+ R Sbjct: 64 VCRRIRAVKQTPIIMITARDSVFDRVMGLDNGADDYIVKPFAIEELLARIRALFRRVHAP 123 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + V D R + + L +RE +L + N + + + ++G Sbjct: 124 AEERLLTFKDLTVDLDARTVKKGNQFIELTKREYDLLVTFLQNTNIVLTRDTLLDKVWG- 182 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 FD VE NVV+ ++ LR KL + + R GY + Sbjct: 183 FDTEVETNVVDVYVRYLRHKLDETDKERYIQTVRGAGYVM 222 >gi|150391442|ref|YP_001321491.1| two component transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149951304|gb|ABR49832.1| two component transcriptional regulator, winged helix family [Alkaliphilus metalliredigens QYMF] Length = 232 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 41/227 (18%), Positives = 82/227 (36%), Gaps = 12/227 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + D + ++ + + ++ Sbjct: 5 LVVDDEREITDAIEVYLRNQNYNVFKAYDGAEALEIFEKEEIHLVLMDVM--MPRLDGTS 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 IR +S VP+I +S + + G DD + KP + E+LARV + RR Sbjct: 63 ATIKIRENSTVPIIILSAKSEDVDKIWGLNVGADDYITKPFNPMELLARVNSSLRRYTSY 122 Query: 123 NNRAETGPIRV-------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 +N T + + + V GE + E +IL LM + + + +I+ Sbjct: 123 SNVTTTKEDVIKIGGIELRDESKAVFVDGEAVRITPLEYKILYLLMNHPNRVFSIEEIYE 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 ++ + V HI ++R+K+ N + +GY + Sbjct: 183 KVWNEPAYNPD--TVTVHIRRIREKIEINPGEPKYLKVVWGVGYKFE 227 >gi|323466878|gb|ADX70565.1| Alkaline phosphatase synthesis transcriptional regulatory protein phoP [Lactobacillus helveticus H10] Length = 240 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 40/233 (17%), Positives = 80/233 (34%), Gaps = 15/233 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D V + F +G + + + I L + + Sbjct: 5 ILMVEDDNSVAEMMGMFFKKEGWQQDIAVDGVEAVDMFKENADKYDLITLDLNLPKKDGI 64 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPI------------HHREI 108 ++ + +RA S P+I ++ S + G D+ V KP H R + Sbjct: 65 QVAKEVRAISPTVPIIMLTARGSESDQVLGLGIGADEYVTKPFSPIALIARIKALHRRVM 124 Query: 109 LARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 + V L +E +L + + Sbjct: 125 MEEDVQTQENNNQEYEIQTAHLKISKDRREVLFDDQPVVDLTPKEFDLLYTMAQKPKQVF 184 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ Q+ ++G ++ EE V++HI KLR+KL K+G + + +GY D Sbjct: 185 SRDQLLELVWG-YEYYGEERTVDAHIKKLRQKLE-KVGAKVIQTVWGVGYKFD 235 >gi|302553272|ref|ZP_07305614.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces viridochromogenes DSM 40736] gi|302470890|gb|EFL33983.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces viridochromogenes DSM 40736] Length = 240 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 46/235 (19%), Positives = 83/235 (35%), Gaps = 20/235 (8%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L +D +++ +G + R DV ++ G L+ Sbjct: 6 LLAEDDRAIRNALERALTLEGYQVMAVADGVEALAQAHRNRPDVLVLDVM--MPGIDGLQ 63 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-------- 113 + R++RA P++ ++ + D+G DD V KP E+ AR+ Sbjct: 64 VCRVLRAEGDRTPVLMLTALVETADRIAGLDAGADDYVVKPFDVEEVFARLRALLRRTSP 123 Query: 114 --------AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRG 165 A E IR+ R L R E +LE L+ N G Sbjct: 124 VAAGSAPAAEEAPKAAPGRFLEAAGIRMDPQARRAWRGERELELTRTEFELLELLVRNAG 183 Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + I+ I+G +D + ++ LR+KL + + R +GY + Sbjct: 184 IVLDHSTIYDRIWG-YDFGPGSKNLAVYVGYLRRKLDEPGAPLLIHTVRGVGYVL 237 >gi|238927184|ref|ZP_04658944.1| response regulator [Selenomonas flueggei ATCC 43531] gi|304437129|ref|ZP_07397091.1| response regulator [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|238884966|gb|EEQ48604.1| response regulator [Selenomonas flueggei ATCC 43531] gi|304369888|gb|EFM23551.1| response regulator [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 230 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 42/227 (18%), Positives = 85/227 (37%), Gaps = 10/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D A + + DG +++ + + L + D+ ++ L G Sbjct: 4 ILLVEDDAAIAELERDYLEADGFAVDISADGDAGKRLAMTGDYDLLLLDVML--PGADGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R +R +P++ +S + G DD + KP E+ ARV A R + Sbjct: 62 AICRDVRKAYDIPILMVSARLEDVDKIRALGLGADDYIIKPFSPSELAARVKAHLARYER 121 Query: 122 ------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 G + + R + G L RE +L +L + +K ++ Sbjct: 122 LKGSAGDAAVLRFGALEIQPQTRRVFLGGNEVILAAREFDLLLFLAQHPQVVFSKETLYD 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 ++ D V HI++LR+K+ + + + GY + Sbjct: 182 RVW-ELDAMGSTATVSVHINRLREKMERDPAHPQWLQTVWGAGYRFN 227 >gi|218513473|ref|ZP_03510313.1| two-component response regulator protein [Rhizobium etli 8C-3] Length = 241 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 48/229 (20%), Positives = 90/229 (39%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ F D+G ++ D ++ L G G L Sbjct: 10 LLVVDDDPRIRQMLTRYFEDEGYTVSSAADGTEMRVRLRQQNFDAVLLDLVLPG-GTDGL 68 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 +L R IRA S VP++ ++ + + + G DD + KP H RE+ AR+ +I RR + Sbjct: 69 DLAREIRAQSDVPIMMLTGRDDVVDRIVGLEVGADDYIAKPFHLREVHARLKSILRRRQP 128 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF---------PLPRRERRILEYLMANRGKRVAKTQ 172 AE G + L E +L + + G+ + + Sbjct: 129 PARNAEPGGEEIIGFEDWKLNLSRRQLLDPEGTEIELTTGEFDMLTTFVRHAGRVLTRDV 188 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + G EA + +++ I +LR+K+ + + + R +GY Sbjct: 189 LMDLTRGRNLEAFD-RTIDAQIVRLRRKIETDPKKPQFIKAVRGVGYVF 236 >gi|196228884|ref|ZP_03127750.1| two component transcriptional regulator, winged helix family [Chthoniobacter flavus Ellin428] gi|196227165|gb|EDY21669.1| two component transcriptional regulator, winged helix family [Chthoniobacter flavus Ellin428] Length = 229 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 49/223 (21%), Positives = 98/223 (43%), Gaps = 6/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D ++ G F +G ++ N + L + + + ++ L Sbjct: 7 ILIIEDDPVMLRGLKDNFEFEGYHVQTANDGDAGLKLALAIQPALIVLDLML--PKVNGY 64 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119 E+ R +R ++P+I ++ + G DD V KP +E+LARV A R+ Sbjct: 65 EICRFLREEKLEMPIIMLTAKGQESDIVLGLKLGADDYVTKPFSIKELLARVEAFLRRQR 124 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 K + G R + R G+ PL +E +L +L+ N G+ +++ +I S ++G Sbjct: 125 KQTGTVYTFGDCRFDTTARTLVRNGQDVPLSPKEFDLLTFLVTNAGRALSRDRIMSTVWG 184 Query: 180 LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 +D V ++ ++ LR K+ + + + R GY + Sbjct: 185 -YDSRVTPRSIDRFVNALRNKIEPDPAEPRILKTVREFGYKFE 226 >gi|261409902|ref|YP_003246143.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261286365|gb|ACX68336.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] Length = 233 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 41/226 (18%), Positives = 89/226 (39%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + D + ++ + + + D+ ++ L Sbjct: 4 ILIVEDDERIADKLRSAISKYDFNVRIIEDFNRVMDIFAETKPDLVLLDVNL--PKYDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 R IR S P+I IS S + ++G DD + KP +LA+V + RR Sbjct: 62 YWCRQIRTQSHCPIIFISARDSGMDQIMALENGADDYITKPFDMELVLAKVRSHLRRAVG 121 Query: 122 SNNRAETGPIRV-------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + V + + L ++E +L LM G+ V++ ++ Sbjct: 122 AYASGQEEEPTVESAGLLLYPERLLVTYGDRSAELTQKEAALLTMLMEKDGRVVSRERLL 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +++N + +I+++R+KLR D +++ R GY Sbjct: 182 DLMW-EDQHFIDDNTLNVYITRVRRKLRELGAGDLIETVRGAGYRF 226 >gi|325847010|ref|ZP_08169836.1| putative alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480982|gb|EGC84027.1| putative alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 230 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 38/229 (16%), Positives = 81/229 (35%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +DG S+ + + L + D+ ++ L Sbjct: 5 IIIVDDEKEIADLLELCLTNDGFSVSKAFNAKDALDLVEAENFDLMILDIMLE--DMDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH--------REILARVA 113 + + IR P+I ++ + G DD + KP + ++ Sbjct: 63 SVCKKIREKHYFPIIMLTSRIDSNDKILGLTMGADDYITKPFNPLEVIARVKTQLRRSQK 122 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + + + + + L E I+ YL N+GK V+ ++ Sbjct: 123 YNKTEKIKDDETYDIRGLLIDKKSHKCFLYDKQIQLTPIEFEIIWYLCKNQGKVVSSEEL 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 F I+ N V +HI ++R K+ + + + +GY I+ Sbjct: 183 FENIWKEKYLD-NNNTVMAHIGRIRDKMNDSGRNPKFIKTVWGVGYEIE 230 >gi|254820274|ref|ZP_05225275.1| KDP operon transcriptional regulatory protein KdpE [Mycobacterium intracellulare ATCC 13950] Length = 226 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 46/225 (20%), Positives = 86/225 (38%), Gaps = 8/225 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++IDD + G + +S + + DV ++ L ++ Sbjct: 5 LVIDDEPQILRALRINLSVRGYEVVTASSGAGALRAAAEHKPDVVILDLGL--PDISGID 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI----LARVAAIYRR 118 + +R P+I +S ++ D+G DD V KP E A V Sbjct: 63 VLAGLRGWLTAPVIVLSARTDSSDKVEALDAGADDYVTKPFGMDEFLARLRAAVRRNTAA 122 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 +V ET V + G L E +LE L+ NRGK V + ++ ++ Sbjct: 123 SEVEQPVIETESFTVDLAAKKVSKNGGEVHLTPTEWGMLEVLVRNRGKLVGREELLKEVW 182 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 G A E + + ++++LR+KL + + ++ +GY + Sbjct: 183 G-PAYATETHYLRVYLAQLRRKLEDDPSNPKHLLTESGMGYRFEV 226 >gi|253989244|ref|YP_003040600.1| DNA-binding transcriptional regulator BaeR [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253780694|emb|CAQ83856.1| transcriptional regulatory protein baer [Photorhabdus asymbiotica] Length = 234 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 46/220 (20%), Positives = 88/220 (40%), Gaps = 4/220 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + I + + D+ ++ L G L Sbjct: 11 LIVEDEPKLGQLLIDYLNAADYKTQWLLRGDEVVPYVQQHNPDIILLDLML--PGCDGLS 68 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR S +P+I ++ L + G DD + KP REI+ARV I RR Sbjct: 69 VCREIRCFSDIPIIMVTAKTEEIDRLLGLEIGADDYICKPYSPREIVARVKTILRRCYRP 128 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 + + +++ + ++ L E R+L+ + G+ +++ Q+ + +Y Sbjct: 129 QDIVKQSDLQIDEACFQARYRDKILDLTPVEFRLLKTMAIRPGRVLSRDQLLNNLYDDH- 187 Query: 183 EAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 V + ++SHI LR+KL + S LGY + Sbjct: 188 RIVTDRTIDSHIKNLRRKLEQLDSNKTFIRSIYGLGYRWE 227 >gi|94972216|ref|YP_594256.1| two component transcriptional regulator [Deinococcus geothermalis DSM 11300] gi|94554267|gb|ABF44182.1| two component transcriptional regulator, winged helix family [Deinococcus geothermalis DSM 11300] Length = 223 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 43/222 (19%), Positives = 95/222 (42%), Gaps = 8/222 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + +DG +++ S E L D+ ++ L + Sbjct: 3 LLIVEDDPHIAELLRDGLREDGYAVDHAASAEEGFALAGLFPHDLLILDVMLPEGIDAGY 62 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L + +R P++ ++ +++ + ++G DD + KP RE+ ARV A+ RR Sbjct: 63 RLGQRLREVGNLAPILYLTARGTVEDRVTGLEAGGDDYLIKPFAFRELRARVRALLRRAG 122 Query: 121 VSNNRAETGP--IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + ++ G L R+E +LE L + G+ + +I ++ Sbjct: 123 GYAHNTLPLSGGFMLDLTAKEVYRSGTRCDLTRKEYALLELLAHHPGRTFTRDEIIERLW 182 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +E VE V++ ++S +R+K + + R +GY + Sbjct: 183 D-GEEGVEPKVIDVYVSSIRRK----TEEGLIGTVRGVGYRL 219 >gi|330831698|ref|YP_004394650.1| beta-lactamase response regulator [Aeromonas veronii B565] gi|328806834|gb|AEB52033.1| Beta-lactamase response regulator [Aeromonas veronii B565] Length = 224 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 50/222 (22%), Positives = 94/222 (42%), Gaps = 5/222 (2%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + L++D A + D I DG +E F + R D ++ L Sbjct: 5 VIWLVEDEASIADTLIYALQTDGFEVEWFMLGQQLLTRLEQTRPDFLILDVGL--PDISG 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL + +RA + +PL+ ++ L + G DD V KP RE+ + R Sbjct: 63 FELCKQVRALTDIPLMFLTARSEEIDRLIGLEIGADDYVAKPFSPREV-CARVRVILRRS 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + + + +G+ L R E +L+ LM G+ ++ Q+ ++ Sbjct: 122 QPVAPQPSALLVLDEERARIHFRGQPLALTRYEYLLLKTLMLAPGRVYSRQQLMDLVWQD 181 Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 +E+++ V++HI +R KLR + + + R LGYS++ Sbjct: 182 AEESLD-RTVDTHIKTIRAKLREHDPEANLILTHRGLGYSLE 222 >gi|323976449|gb|EGB71539.1| heavy metal response regulator [Escherichia coli TW10509] Length = 227 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 37/224 (16%), Positives = 98/224 (43%), Gaps = 6/224 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G ++ ++ L + D+ ++ L Sbjct: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIML--PDVNGW 60 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118 ++ R++R A+ +P++ ++ +++ + + G DD + KP E+LARV Sbjct: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + ++ + + V R G L +E +LE+ + ++G+ + ++ I S ++ Sbjct: 121 AVIIESQFQVADLIVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + + + N ++ + +LR K+ N + + R +GY ++ Sbjct: 181 DM-NFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223 >gi|301383835|ref|ZP_07232253.1| response regulator receiver:transcriptional regulatory protein, C-terminal [Pseudomonas syringae pv. tomato Max13] gi|302133400|ref|ZP_07259390.1| response regulator receiver:transcriptional regulatory protein, C-terminal [Pseudomonas syringae pv. tomato NCPPB 1108] gi|331016289|gb|EGH96345.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 267 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 48/225 (21%), Positives = 92/225 (40%), Gaps = 9/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD +++ ++ G + DV ++ L GE L Sbjct: 41 LIVDDDVAIRELLCDYLTRFNINARGVTDGSQMRQALTDETFDVVVLDLML--PGEDGLS 98 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R +R+ S +P++ ++ + + G DD + KP RE++AR+ I RR++ Sbjct: 99 LCRWLRSTSDIPILMLTARCEPTDRIIGLELGADDYMAKPFEPRELVARIQTILRRVRDE 158 Query: 123 NNRAETGPIRVFSD-----GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + T + G V PL E R+L + + +++ Q+ A Sbjct: 159 RSDQRTTIRFDAWRLNSVLRQLTAADGLVVPLSNAEFRLLRVFLERPHRVLSREQLLDAA 218 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 G EA + ++ +S+LR+KL + + + R GY D Sbjct: 219 RGRSIEAFD-RSIDLLVSRLRQKLGDDPKNPQLIKTVRGEGYLFD 262 >gi|322419915|ref|YP_004199138.1| winged helix family two component transcriptional regulator [Geobacter sp. M18] gi|320126302|gb|ADW13862.1| two component transcriptional regulator, winged helix family [Geobacter sp. M18] Length = 232 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 44/225 (19%), Positives = 84/225 (37%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + + G + S L S ++ ++ L Sbjct: 5 ILLVEDDLKLAEIARVYLEQAGFRVIHTESGVRALELARSENPVLAVLDLML--PDLSGE 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R + A + +P+I ++ S + L F G DD + KP RE++ RV A+ +R Sbjct: 63 AVCRELTASTDIPVIMLTSKSSEEERLAGFALGADDYIVKPFSPRELVCRVQAVLKRAGK 122 Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 A+ + +G+ L E ++L L + K + ++ Sbjct: 123 VAGAADRLSFNGGTLILDNASFSVICKGQPVKLTVVEFKLLFALASTPQKTFTREELIDK 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + G + E ++SHI +R KL + V + LGY Sbjct: 183 VMG-YQFEGYERNIDSHIKNIRHKLSDAPHSPVFVLTIYGLGYRF 226 >gi|225027370|ref|ZP_03716562.1| hypothetical protein EUBHAL_01626 [Eubacterium hallii DSM 3353] gi|224955313|gb|EEG36522.1| hypothetical protein EUBHAL_01626 [Eubacterium hallii DSM 3353] Length = 225 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 38/224 (16%), Positives = 89/224 (39%), Gaps = 6/224 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + ++ + E + + +S I ++ Sbjct: 6 IMVVDDESRMRKLVKDFLKKKDFEVIEAADGEEALDIFFKDK-SISLIICDVMMPKINGF 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV--NKPIHHREILARVAAIYRRL 119 ++ + IR +SQVP+I ++ L+ FD GVD+ + Sbjct: 65 DVVKEIRQYSQVPIIMLTAKGEESDELNGFDLGVDEYISKPFSPKILVARVEAILRRSNN 124 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + G I + + + G+ L +E +L Y + N+G +++ +I + ++ Sbjct: 125 LSTGEVLKAGGIELDIAAHEVRIDGKEITLSFKEFELLNYFVVNQGVALSREKILNNVW- 183 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 +D + +++H+ KLR KL K + + + +GY + + Sbjct: 184 NYDYFGDARTIDTHVKKLRSKLGEKG--EYIKTIWGMGYKFEVD 225 >gi|182676924|ref|YP_001831071.1| two component transcriptional regulator [Beijerinckia indica subsp. indica ATCC 9039] gi|182636554|gb|ACB97327.1| two component transcriptional regulator, winged helix family [Beijerinckia indica subsp. indica ATCC 9039] Length = 238 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 47/226 (20%), Positives = 92/226 (40%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++ L ++G +E + + + R D+ ++ L GE L Sbjct: 4 LLIVEDDPDIRQLIGELMRNEGFHIEEAENAAAMDATMTRIRPDLLILDLML--PGEDGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R IR HS +P++ ++ + + G DD + KP RE+LARV A+ RR Sbjct: 62 SICRRIRTHSIMPILMLTAKSDEIDRVVGLEMGADDYLVKPFGPRELLARVRALLRRAAA 121 Query: 122 SNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + + + +G E +L + + + + QI + Sbjct: 122 LSPVMSSRRFAFDRFIIDLDARQVTDDKGLALTFTSAEFDLLACFVQRPRRVLTRDQILN 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220 I G + V+ IS++R+KL G + + + R GY Sbjct: 182 QIRGRI-TDPFDRTVDMLISRIRRKLDAACPGSNLISTIRNGGYLF 226 >gi|157156750|ref|YP_001461733.1| DNA-binding transcriptional activator CusR [Escherichia coli E24377A] gi|194437422|ref|ZP_03069519.1| transcriptional regulatory protein CusR [Escherichia coli 101-1] gi|218553112|ref|YP_002386025.1| DNA-binding transcriptional activator CusR [Escherichia coli IAI1] gi|253774451|ref|YP_003037282.1| CusR family transcriptional regulator [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254160647|ref|YP_003043755.1| DNA-binding transcriptional activator CusR [Escherichia coli B str. REL606] gi|256020522|ref|ZP_05434387.1| DNA-binding transcriptional activator CusR [Shigella sp. D9] gi|293418681|ref|ZP_06661116.1| DNA-binding transcriptional activator CusR [Escherichia coli B088] gi|300825001|ref|ZP_07105099.1| transcriptional activator protein Irlr [Escherichia coli MS 119-7] gi|307315262|ref|ZP_07594839.1| two component transcriptional regulator, winged helix family [Escherichia coli W] gi|331666916|ref|ZP_08367790.1| transcriptional regulatory protein CusR [Escherichia coli TA271] gi|331676223|ref|ZP_08376935.1| transcriptional regulatory protein CusR [Escherichia coli H591] gi|332281703|ref|ZP_08394116.1| transcriptional regulatory protein cusR [Shigella sp. D9] gi|157078780|gb|ABV18488.1| transcriptional regulatory protein cusR [Escherichia coli E24377A] gi|194423591|gb|EDX39581.1| transcriptional regulatory protein CusR [Escherichia coli 101-1] gi|218359880|emb|CAQ97422.1| DNA-binding response regulator in two-component regulatory system with CusS [Escherichia coli IAI1] gi|242376342|emb|CAQ31038.1| cusR [Escherichia coli BL21(DE3)] gi|253325495|gb|ACT30097.1| two component heavy metal response transcriptional regulator, winged helix family [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253972548|gb|ACT38219.1| DNA-binding response regulator in two-component regulatory system with CusS [Escherichia coli B str. REL606] gi|253976742|gb|ACT42412.1| DNA-binding response regulator in two-component regulatory system with CusS [Escherichia coli BL21(DE3)] gi|291325209|gb|EFE64624.1| DNA-binding transcriptional activator CusR [Escherichia coli B088] gi|300522521|gb|EFK43590.1| transcriptional activator protein Irlr [Escherichia coli MS 119-7] gi|306905360|gb|EFN35899.1| two component transcriptional regulator, winged helix family [Escherichia coli W] gi|315059824|gb|ADT74151.1| DNA-binding response regulator in two-component regulatory system with CusS [Escherichia coli W] gi|320198302|gb|EFW72906.1| Copper-sensing two-component system response regulator CusR [Escherichia coli EC4100B] gi|323184946|gb|EFZ70314.1| transcriptional activator protein irlR [Escherichia coli 1357] gi|323379609|gb|ADX51877.1| two component heavy metal response transcriptional regulator, winged helix family [Escherichia coli KO11] gi|323945141|gb|EGB41202.1| heavy metal response regulator [Escherichia coli H120] gi|323963248|gb|EGB58814.1| heavy metal response regulator [Escherichia coli H489] gi|331066140|gb|EGI38024.1| transcriptional regulatory protein CusR [Escherichia coli TA271] gi|331076281|gb|EGI47563.1| transcriptional regulatory protein CusR [Escherichia coli H591] gi|332104055|gb|EGJ07401.1| transcriptional regulatory protein cusR [Shigella sp. D9] Length = 227 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 37/224 (16%), Positives = 98/224 (43%), Gaps = 6/224 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G ++ ++ L + D+ ++ L Sbjct: 3 LLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIML--PDVNGW 60 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118 ++ R++R A+ +P++ ++ +++ + + G DD + KP E+LARV Sbjct: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLMKPFAFAELLARVRTLLRRGA 120 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + ++ + + V R G L +E +LE+ + ++G+ + ++ I S ++ Sbjct: 121 AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + + + N ++ + +LR K+ N + + R +GY ++ Sbjct: 181 DM-NFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223 >gi|320332927|ref|YP_004169638.1| winged helix family two component transcriptional regulator [Deinococcus maricopensis DSM 21211] gi|319754216|gb|ADV65973.1| two component transcriptional regulator, winged helix family [Deinococcus maricopensis DSM 21211] Length = 222 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 53/221 (23%), Positives = 96/221 (43%), Gaps = 8/221 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + A DG ++ + A D++ ++ L G L Sbjct: 4 ILIVDDDPAILEILGAYLRADGHAVLEAQDGHAGQARLPEA--DLALLDWML--PGVSGL 59 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL R R H PL+ ++ + L + G DD V KP RE++ARV A+ RR + Sbjct: 60 ELARAQRRLHPDFPLLLLTARGEEEDRLLGLEVGADDYVTKPFSPREVVARVRALLRRAR 119 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + + G + R + G+ L + E +L L + G ++ ++ ++G Sbjct: 120 IHDRVSSGGL-ELDERQRTAHLDGQALALSKLEFDLLLTLARHPGFVWSRDRLLERVWG- 177 Query: 181 FDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 D E VV+ H++ LR+KL + + R +GY Sbjct: 178 GDFPGVERVVDVHMAGLRRKLGEAPEQPRFIRTVRGVGYCF 218 >gi|319779219|ref|YP_004130132.1| Two-component system response regulator OmpR [Taylorella equigenitalis MCE9] gi|317109243|gb|ADU91989.1| Two-component system response regulator OmpR [Taylorella equigenitalis MCE9] Length = 247 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 35/231 (15%), Positives = 81/231 (35%), Gaps = 15/231 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ + G ++ + ++ ++ L GE L Sbjct: 11 ILVVDDDPRLRELLKKYLTEQGYTVTAVEDGKEMSKACQRENFNIIVLDIML--PGEDGL 68 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILA 110 + R +RA + + P+I ++ + + G DD + KP + R Sbjct: 69 SICRRLRATNDMTPIIMLTAKSEDIDRIIGLEMGADDYIVKPFNPRELLARINAVLRRNT 128 Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + GP ++ R E P+ E IL+ + + +++ Sbjct: 129 VEFEHPGAPSTEDLVVNFGPFKLNLSTRTLTKNDEPVPMTTGEFAILKVFARHPREPLSR 188 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++ G + + ++ IS++RK + N + + LGY Sbjct: 189 YKLMELARGK-EYENFDRSLDVQISRVRKLIEVNPSYPQFIQTVWGLGYVF 238 >gi|229014045|ref|ZP_04171169.1| DNA-binding response regulator [Bacillus mycoides DSM 2048] gi|229062531|ref|ZP_04199844.1| DNA-binding response regulator [Bacillus cereus AH603] gi|228716814|gb|EEL68505.1| DNA-binding response regulator [Bacillus cereus AH603] gi|228747301|gb|EEL97180.1| DNA-binding response regulator [Bacillus mycoides DSM 2048] Length = 231 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 42/226 (18%), Positives = 91/226 (40%), Gaps = 9/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G + + ++ + + ++ L Sbjct: 4 ILIVEDDPNISSLLQSHIQKYGYDAVVAENFDDIMESFNAVKPHLVLLDVNL--PKFDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 R IR S P+I IS + +SG DD + KP H+ ++A++ RR+ Sbjct: 62 YWCRQIRHESTCPIIFISARAGEMEQIMAIESGADDYITKPFHYDVVMAKIKGQLRRIYG 121 Query: 122 SNNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + I F + + E L ++E + E L++ + ++ + + Sbjct: 122 DYAPNISERIVEVEGLKLFPERPEIHFGAEQVLLTKKEAILAEMLLSKFPRTASREDLLA 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 A++ + VEEN + +I++LRKK + +++ R LGY + Sbjct: 182 ALWD-DESFVEENTLNVNITRLRKKFNELGIENAIETVRGLGYRFN 226 >gi|157372130|ref|YP_001480119.1| DNA-binding response regulator CreB [Serratia proteamaculans 568] gi|157323894|gb|ABV42991.1| two component transcriptional regulator, winged helix family [Serratia proteamaculans 568] Length = 231 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 53/222 (23%), Positives = 93/222 (41%), Gaps = 10/222 (4%) Query: 4 LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63 L++D + D I +G + F E + ++ ++ L EL Sbjct: 7 LVEDEPSIADTLIYTLESEGFQVRWFERGEPALQALAQGAPALAILDVGL--PDINGFEL 64 Query: 64 PRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 R + + S P++ ++ L + G DD V KP RE+ ARV I RRL+ Sbjct: 65 CRRLLSQSADLPILFLTARSDELDRLIGLEIGADDYVAKPFSPREVSARVRTILRRLQKQ 124 Query: 123 NNR-----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + GP + + L R E +L+ L+ G+ ++ Q+ ++ Sbjct: 125 QRLQQPALYQFGPFSLDEQAAAIHYHQQPLLLTRYEFLLLKTLLLAPGRVFSRQQLMESV 184 Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGY 218 + L +E+++ V++HI LR KLR P+ + R LGY Sbjct: 185 WALAEESLD-RTVDTHIKTLRAKLRAIDPAEPPIHTHRGLGY 225 >gi|75759288|ref|ZP_00739387.1| Two-component response regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74493237|gb|EAO56354.1| Two-component response regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 240 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 42/226 (18%), Positives = 91/226 (40%), Gaps = 9/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G + + ++ + + ++ L Sbjct: 13 ILIVEDDPNISSLLQSHIQKYGYEAVVAENFDDIMESFNAVKPHLVLLDVNL--PKFDGF 70 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 R IR S P+I IS + +SG DD + KP H+ ++A++ RR+ Sbjct: 71 YWCRQIRHESTCPIIFISARAGEMEQIMAIESGADDYITKPFHYDVVMAKIKGQLRRIYG 130 Query: 122 SNNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + I F + + E L ++E + E L++ + ++ + + Sbjct: 131 DYAPNISERIVEVEGLKLFPERPEIHFGSEQVLLTKKEAILAEMLLSKFPRTASREDLLA 190 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 A++ + VEEN + +I++LRKK + +++ R LGY + Sbjct: 191 ALWD-DESFVEENTLNVNITRLRKKFNELGIENSIETVRGLGYRFN 235 >gi|154498433|ref|ZP_02036811.1| hypothetical protein BACCAP_02422 [Bacteroides capillosus ATCC 29799] gi|150272501|gb|EDM99686.1| hypothetical protein BACCAP_02422 [Bacteroides capillosus ATCC 29799] Length = 228 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 46/223 (20%), Positives = 90/223 (40%), Gaps = 8/223 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + ++ + G + E D+ ++ E Sbjct: 5 LVLEDESNIRSFVVINLKRAGYEAIEAETGEEALAQLR-RNPDIKVALLDIMLPDMDGFE 63 Query: 63 LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 + R IRA SQ+ +I ++ + +G DD V KP E+ AR+ A+YRR Sbjct: 64 VCRRIRASDSQIGIIMLTARTQEMDKVTGLMTGADDYVTKPFSPAELTARIDALYRRTGG 123 Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 K S+ P + + + E G+ L E I++ M G+ +++ +I + Sbjct: 124 AEKESSGEISQPPFLLNTRNQTLEKNGQRVKLTPVEYSIVKLFMEKPGQALSREEILDTV 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYS 219 +G D E +V+ +I +LR K+ + + + GY Sbjct: 184 WGR-DYFGELKIVDVNIRRLRIKIEDDPQNPAYITTVWGYGYK 225 >gi|126659073|ref|ZP_01730213.1| Two component Transcriptional regulator, Winged helix family protein [Cyanothece sp. CCY0110] gi|172035214|ref|YP_001801715.1| two-component response regulator [Cyanothece sp. ATCC 51142] gi|126619601|gb|EAZ90330.1| Two component Transcriptional regulator, Winged helix family protein [Cyanothece sp. CCY0110] gi|171696668|gb|ACB49649.1| two-component response regulator [Cyanothece sp. ATCC 51142] Length = 246 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 46/228 (20%), Positives = 92/228 (40%), Gaps = 9/228 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++I+D ++D G ++ + L + D+ ++ L G V Sbjct: 4 ILVIEDDDAIRDLIATNLEMAGYDIKQAPDGIKGQALAVQLQPDLIMLDLMLPKVDGFTV 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R + +P++ +S Q ++ F++G DD + KP E+LARV A+ RR Sbjct: 64 CQRLRRDDRTADIPVLMLSALGQTQDKVEGFNAGADDYLTKPFELAEMLARVRALLRRTD 123 Query: 121 VSNNRAETGPIRVF------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 A+ I + + + + L E +L L+ G+ V+ ++I Sbjct: 124 RIPQAAKHSEILNYGPLTLIPERFEAIWFEDTVKLTHLEFELLHCLLQRHGQTVSPSEIL 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 ++G +D + + HI LR KL + + + GY ++ Sbjct: 184 KEVWG-YDPDDDIETIRVHIRHLRTKLEPDPRHPCYIKTVYGAGYCLE 230 >gi|284929132|ref|YP_003421654.1| winged helix family two component transcriptional regulator [cyanobacterium UCYN-A] gi|284809591|gb|ADB95296.1| two component transcriptional regulator, winged helix family [cyanobacterium UCYN-A] Length = 246 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 90/228 (39%), Gaps = 9/228 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++I+D ++D G + + L + D+ ++ L G V Sbjct: 4 ILVIEDDDAIRDLISTNLEMAGYDINQAPDGIKGQALAVQLQPDLIMLDLMLPKVDGFTV 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R + +P++ +S + ++ F++G DD + KP E+LARV A+ RR Sbjct: 64 CQRLRRDERTADIPVLMLSALGQTKDKVEGFNAGADDYLTKPFELAEMLARVRALLRRTD 123 Query: 121 VSNNRAETGPIRVF------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 A+ I + + + + L E +L L+ G+ V+ ++I Sbjct: 124 RIPQAAKHSEILNYGPLTLIPERFEAIWFEQTVKLTHLEFELLHCLLQRHGQTVSPSEIL 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 ++G +D + + HI LR KL + + GY ++ Sbjct: 184 KEVWG-YDPDDDIETIRVHIRHLRTKLEPDPRHPCYIKTVYGAGYCLE 230 >gi|256827452|ref|YP_003151411.1| response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein [Cryptobacterium curtum DSM 15641] gi|256583595|gb|ACU94729.1| response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein [Cryptobacterium curtum DSM 15641] Length = 243 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 38/231 (16%), Positives = 81/231 (35%), Gaps = 12/231 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 + DD A +++ + +G ++ + + + ++ Sbjct: 12 ILFADDDADIREVVSIMLRAEGYYVDLAGDGLEAMRYLDNPDSNYDLVILDIVMPQATGY 71 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + +R S VP++ ++ + + F G +D + KP E +ARV A+ RR Sbjct: 72 DVCKHLRQTSAVPVLFLTARGQDEDKVRGFAFGGNDYLVKPFSIAEFIARVKAMLRRWHQ 131 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMA-----------NRGKRVAK 170 T + + + + ++ L +RG+ + Sbjct: 132 YGASGPTATSQQEQAICIGNITIDPLTRTATKAKVAIPLTDLEYELLYLLASHRGQTLTA 191 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 +I+ +I+ N + HI LRKKL N + + GY I Sbjct: 192 RKIYESIWDDAYLPQSSNTIMVHIRNLRKKLENDPRNPVVIQTVWGKGYRI 242 >gi|254829734|ref|ZP_05234389.1| hypothetical protein Lmon1_00195 [Listeria monocytogenes 10403S] Length = 228 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 40/228 (17%), Positives = 84/228 (36%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D V + F + ++ + + D++ I+ L + Sbjct: 3 LLMIEDNVSVCEMIEMFFMKEEINATFVHDGKMGYEAFFKDDYDIAIIDLML--PNMDGM 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAA 114 + R IR S VP+I ++ S + + G DD V KP ++ R + Sbjct: 61 TICRKIREVSDVPIIILTAKESESDQVLGLEMGADDYVTKPFSPLTLMARIKAVTRRKNS 120 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + T + L +E +L +LM + + ++ Q+ Sbjct: 121 ATSTENNEDILETTYFKISKRTREIFYQDELLDALTPKEFDLLYFLMQHPRQVFSREQLL 180 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 ++G + +E V+ HI +LR+K+ + + + +GY D Sbjct: 181 EQVWG-YQFYGDERTVDVHIKRLRQKIATETKP-FLHTVWGVGYKFDE 226 >gi|152973317|ref|YP_001338463.1| DNA-binding response regulator CreB [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238892984|ref|YP_002917718.1| DNA-binding response regulator CreB [Klebsiella pneumoniae NTUH-K2044] gi|150958166|gb|ABR80196.1| catabolic regulation response regulator [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238545300|dbj|BAH61651.1| catabolic regulation response regulator [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 229 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 45/224 (20%), Positives = 89/224 (39%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 L++D + D + + +G + F + DV+ ++ L Sbjct: 6 IWLVEDEQSIADTLVYMLQQEGFQVSVFGRGLPALEAAAHQAPDVAILDVGL--PDISGF 63 Query: 62 ELPRI-IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117 EL R + + +P++ ++ L + G DD + KP RE+ ARV + Sbjct: 64 ELCRRLLTRYPALPVLFLTARSDEVDKLLGLEIGADDYIAKPFSPREVCARVRTVLRRLQ 123 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + G + G+ L R E +L+ L+ G+ ++ Q+ + Sbjct: 124 KFAAPSPVVRVGEFVLDEQAAAISWFGQPLNLTRYEFLLLKTLLHAPGRVFSRQQLMELV 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + + + V++HI LR KLR P+++ R +GYS+ Sbjct: 184 W-IDAWESLDRTVDTHIKTLRAKLRAVNPEKAPINTHRGMGYSL 226 >gi|86361259|ref|YP_473146.1| two-component response regulator protein [Rhizobium etli CFN 42] gi|86285361|gb|ABC94419.1| probable two-component response regulator protein [Rhizobium etli CFN 42] Length = 241 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 46/229 (20%), Positives = 88/229 (38%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ F D+G ++ D ++ L G G L Sbjct: 10 LLVVDDDPRIRQMLTRYFEDEGYTVSSAADGTEMRVRLRQQNFDAVLLDLVLPG-GTDGL 68 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 +L R IRA S VP++ ++ + + + G DD + KP H RE+ AR+ +I RR + Sbjct: 69 DLAREIRAQSDVPIMMLTGRDDVVDRIVGLEVGADDYIAKPFHLREVHARLKSILRRRQP 128 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF---------PLPRRERRILEYLMANRGKRVAKTQ 172 E + L E +L + + G+ + + Sbjct: 129 PARNPEAAGEEIIGFEDWKLNLSRRQLLDPEGTEIELTTGEFDMLTTFVRHAGRVLTRDV 188 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + G EA + +++ I +LR+K+ + + + R +GY Sbjct: 189 LMDLTRGRNLEAFD-RTIDAQIVRLRRKIETDPKKPQFIKAVRGVGYVF 236 >gi|327463016|gb|EGF09337.1| DNA-binding response regulator [Streptococcus sanguinis SK1] Length = 238 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 40/220 (18%), Positives = 85/220 (38%), Gaps = 6/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D +++ + G + + + ++ L Sbjct: 14 ILLVEDDPVIRQMIKKMLEQWGFQVVAVEDFMDVLTVFVREEPHLVLMDIGLPL--FNGY 71 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 + IR S VP++ +S + + G DD V KP + LA+V Sbjct: 72 HWCQEIRKISTVPIMFLSSRDQSMDIVMAINMGADDYVTKPFDNNVFLAKVQGLLRRSYE 131 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + E + + D G+V L + E +IL L + VA+ + ++ Sbjct: 132 FGNDQSLLEHQGVILNLKSTDLVFDGKVVTLTKNEFQILRVLFEHSDGIVARDDLMKELW 191 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 D +++N + ++++LRKKL + +++K+ +GY Sbjct: 192 -NSDFFIDDNTLSVNVARLRKKLEEHGLKNFIETKKGIGY 230 >gi|295396500|ref|ZP_06806661.1| response regulator [Brevibacterium mcbrellneri ATCC 49030] gi|294970692|gb|EFG46606.1| response regulator [Brevibacterium mcbrellneri ATCC 49030] Length = 240 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 46/224 (20%), Positives = 83/224 (37%), Gaps = 10/224 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + G ++ DV ++ L LE Sbjct: 16 LVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGL--PELDGLE 73 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR S ++ ++ S + G DD + KP RE++ RV + RR + S Sbjct: 74 VCRRIRTFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHTVLRRPRTS 133 Query: 123 NNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 A+ + V L R E +L L G+ + + + + Sbjct: 134 TTPAQVTTPLIVGDLILDPVAHQVRVGETTVELTRTEFELLVALALRPGQVLTRHDLVTE 193 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYS 219 ++ +E +V+ HI LR+KL G +D+ R +GY Sbjct: 194 VWDTT-WVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGYR 236 >gi|255523798|ref|ZP_05390763.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|255512501|gb|EET88776.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] Length = 242 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 51/230 (22%), Positives = 92/230 (40%), Gaps = 14/230 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +LIDD + D + +G +++ + + + D+ ++ L Sbjct: 11 ILLIDDEEDITDLIEDILLKEGFKNIKKAHCGLDGIKICEDEKPDIVVLDIML--PDIDG 68 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ + IR S P++ +S S + G DD V KP +EI R+ A +RR + Sbjct: 69 IEVCKKIRQFSYCPILFLSAKNSDVDKIVGLSMGGDDYVTKPFSPKEIAFRIKAQFRRQQ 128 Query: 121 VS---------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 N + I + + L +E ++L YL N K V K Sbjct: 129 YDGIKEVSDNKNENIKISNINIDKLHSQVYKEDIEVKLTAKEYKLLLYLAENSNKIVNKE 188 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++ ++G D +N + HI LR+KL N + + + LGY + Sbjct: 189 RLCEVVWG-DDYIGYDNTISVHIRHLREKLEKNPSKPEIIVTVIGLGYKL 237 >gi|242372014|ref|ZP_04817588.1| hemin DNA-binding response regulator [Staphylococcus epidermidis M23864:W1] gi|242350283|gb|EES41884.1| hemin DNA-binding response regulator [Staphylococcus epidermidis M23864:W1] Length = 234 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 50/222 (22%), Positives = 95/222 (42%), Gaps = 4/222 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + D ++ + F S E D++ ++ KG E Sbjct: 15 LIVDDDRKILDYVATHLINEHIRTHTFLSGETALHFLEKENVDIAIVDIM--MKGMDGFE 72 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L + ++ ++P+I ++ +L F SG DD V KP +E+L R+ A+ RR +++ Sbjct: 73 LCQKLKEDYELPVIMLTARDALSDKERAFLSGTDDYVTKPFEVKELLFRIKAVLRRYQIN 132 Query: 123 NNRAETGPIRVFSDGRDP-EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + V + LP +E +++ L++N + I I+G F Sbjct: 133 AESELKLGNLTLNQSYMELSVDSKTVNLPNKEFQLIFLLVSNPKHIFTRDDIIEKIWG-F 191 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 D ++ V+ HI +LRK+L + + R GY + N Sbjct: 192 DYEGDDRTVDVHIKRLRKRLMQLEASVSIHTVRGQGYMVSQN 233 >gi|238917425|ref|YP_002930942.1| two-component system, OmpR family, phosphate regulon response regulator OmpR [Eubacterium eligens ATCC 27750] gi|238872785|gb|ACR72495.1| two-component system, OmpR family, phosphate regulon response regulator OmpR [Eubacterium eligens ATCC 27750] Length = 227 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 43/224 (19%), Positives = 91/224 (40%), Gaps = 8/224 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD +++ ++G + + + + + D++ ++ + + Sbjct: 5 LVVDDEEDIRELVGIYIKNEGYQVYKAANGKDALDIIDNMSIDITILDVMMA--DMDGIT 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L IR S +P+I +S + +G DD + KP + E++ARV A RR K Sbjct: 63 LCMEIRKKSNIPIIMLSAKDQDMDKVIGLSAGADDYLAKPFNPVELIARVKAQLRRYKDF 122 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFP-----LPRRERRILEYLMANRGKRVAKTQIFSAI 177 NN+ ++ + + + L +E ILE L N+G + I+ + Sbjct: 123 NNQKQSNILEYLDLTMNIDTHRVFLSSKEILLTPKEFAILELLWKNKGNVFSTEHIYDML 182 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + + NV+ HI +R K+ + + + +GY Sbjct: 183 WSEEEAYDINNVIMVHIRNIRSKIETDLKNPKYIKTVWGVGYKF 226 >gi|16803547|ref|NP_465032.1| hypothetical protein lmo1507 [Listeria monocytogenes EGD-e] gi|47097204|ref|ZP_00234768.1| DNA-binding response regulator [Listeria monocytogenes str. 1/2a F6854] gi|224501553|ref|ZP_03669860.1| hypothetical protein LmonFR_03382 [Listeria monocytogenes FSL R2-561] gi|254828259|ref|ZP_05232946.1| DNA-binding response regulator [Listeria monocytogenes FSL N3-165] gi|254898327|ref|ZP_05258251.1| hypothetical protein LmonJ_00890 [Listeria monocytogenes J0161] gi|254912181|ref|ZP_05262193.1| DNA-binding response regulator [Listeria monocytogenes J2818] gi|254936509|ref|ZP_05268206.1| DNA-binding response regulator [Listeria monocytogenes F6900] gi|284801897|ref|YP_003413762.1| hypothetical protein LM5578_1652 [Listeria monocytogenes 08-5578] gi|284995039|ref|YP_003416807.1| hypothetical protein LM5923_1604 [Listeria monocytogenes 08-5923] gi|16410936|emb|CAC99585.1| lmo1507 [Listeria monocytogenes EGD-e] gi|47014418|gb|EAL05387.1| DNA-binding response regulator [Listeria monocytogenes str. 1/2a F6854] gi|258600647|gb|EEW13972.1| DNA-binding response regulator [Listeria monocytogenes FSL N3-165] gi|258609103|gb|EEW21711.1| DNA-binding response regulator [Listeria monocytogenes F6900] gi|284057459|gb|ADB68400.1| hypothetical protein LM5578_1652 [Listeria monocytogenes 08-5578] gi|284060506|gb|ADB71445.1| hypothetical protein LM5923_1604 [Listeria monocytogenes 08-5923] gi|293590154|gb|EFF98488.1| DNA-binding response regulator [Listeria monocytogenes J2818] Length = 228 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 40/228 (17%), Positives = 83/228 (36%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D V + F + + + + D++ I+ L + Sbjct: 3 LLMIEDNVSVCEMIEMFFMKEEIDATFVHDGKMGYEAFFKDDYDIAIIDLML--PNMDGM 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAA 114 + R IR S VP+I ++ S + + G DD V KP ++ R + Sbjct: 61 TICRKIREVSDVPIIILTAKESESDQVLGLEMGADDYVTKPFSPLTLMARIKAVTRRKNS 120 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + T + L +E +L +LM + + ++ Q+ Sbjct: 121 ATSTENNEDILETTYFKISKRTREIFYQDELLDALTPKEFDLLYFLMQHPRQVFSREQLL 180 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 ++G + +E V+ HI +LR+K+ + + + +GY D Sbjct: 181 EQVWG-YQFYGDERTVDVHIKRLRQKIATETKP-FLHTVWGVGYKFDE 226 >gi|304385704|ref|ZP_07368048.1| response regulator [Pediococcus acidilactici DSM 20284] gi|304328208|gb|EFL95430.1| response regulator [Pediococcus acidilactici DSM 20284] Length = 229 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 38/225 (16%), Positives = 86/225 (38%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + ++G + + D+ + ++ + Sbjct: 3 ILVVDDDKEIVELLDIYIKNEGYEPVSAYNGKEALTKL-HTDPDIKLMILDIMMPEMDGM 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R +R S++P++ +S + +G DD V KP + EI+ARV ++ RR + Sbjct: 62 QVVREVRKDSELPILMLSAKTDDMDKIKGLLTGADDYVTKPFNPLEIMARVKSLLRRSEK 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF------PLPRRERRILEYLMANRGKRVAKTQIFS 175 + + + + L E IL L ++ + + +IF Sbjct: 122 DVTDDAPEILDIGPLTINSDSHEVKTLAGKAVQLTALEFGILYLLASHPNRVFSADEIFE 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYS 219 ++ + + V H+S LR K+ G +++ +GY Sbjct: 182 RVW-QQESVISAKTVMVHVSHLRDKIEEATGGEKVIETVWGVGYK 225 >gi|311740194|ref|ZP_07714026.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035] gi|311304749|gb|EFQ80820.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035] Length = 234 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 88/224 (39%), Gaps = 10/224 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + + NS + D ++ G E Sbjct: 10 LVVDDEPNIVELLTVSLKFQNFEVYSANSGNEALRIAREVNPDAYILDVM--MPGMDGFE 67 Query: 63 LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L +R P++ ++ + + G DD V KP E++ R+ I RR Sbjct: 68 LLGKLRQEGLDGPVLYLTAKDGVDQRIHGLTIGADDYVTKPFSLEEVITRLRVIMRRGGA 127 Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + D + GE+ L E +L YLM N+ ++K++I Sbjct: 128 AEESTNDATMSYADLTLNDDTHEVTKAGELIELSPTEFNLLRYLMQNKEVVLSKSKILDN 187 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +D + NVVES+IS LR+K+ + + + R +GY + Sbjct: 188 VW-HYDFGGDGNVVESYISYLRRKI-DTGETQLIHTVRGVGYVL 229 >gi|78188413|ref|YP_378751.1| two component transcriptional regulator [Chlorobium chlorochromatii CaD3] gi|78170612|gb|ABB27708.1| two component transcriptional regulator, winged helix family [Chlorobium chlorochromatii CaD3] Length = 253 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 46/228 (20%), Positives = 95/228 (41%), Gaps = 12/228 (5%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + ++++D + G S E + ++ L G Sbjct: 22 LLLVVEDDQNLAALMEYNLNRAGYRCHIVGSAEAAMVELGRKSFALVLLDVML--PGMDG 79 Query: 61 LELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 EL R IR P+I ++ + F+ G+DD V KP RE+ R+ AI + Sbjct: 80 FELCRHIRNTHLYRDLPIIMVTAKGEEIDRILGFELGIDDYVVKPFSFRELNLRIRAILK 139 Query: 118 RLKVSNNRAETGPIR----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 R + + +A+ V + G+ L E ++L L+ +G+ ++ + Sbjct: 140 RERRQSGKAQEVLGTGGLEVDLVRHCVTLDGQELVLTLMEFKLLVALLKRKGEAQSRETL 199 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 S ++ + D+++ +++HI+++R+KL N + + R LGY ++ Sbjct: 200 LSDVWDI-DKSISTRTIDTHITRIREKLGNYGA--LIKTVRGLGYRLE 244 >gi|332186744|ref|ZP_08388486.1| response regulator [Sphingomonas sp. S17] gi|332013077|gb|EGI55140.1| response regulator [Sphingomonas sp. S17] Length = 230 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 51/225 (22%), Positives = 94/225 (41%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A + G ++E +L S D+ + L L Sbjct: 5 ILIVEDDASTAAYVAKGLAEAGYAVEQCGDGRDGLFLASEGIFDLIIADRML--PRLDGL 62 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + IRA P++ +S ++ +D +G DD + KP E+ AR+ A+ RR Sbjct: 63 AMVSAIRAAGISTPVLILSALATVDDRVDGLKAGADDYLCKPFSFAELSARIEALVRRSD 122 Query: 121 VSNNRAETG-----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + + + R G++ P+ RE +LE+L + G+ V +T + Sbjct: 123 RAASEPTRTKLSVGDLEIDLLARTVTRAGKLIPVGAREFNLLEFLARHAGQVVTRTMMLE 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I+ + NVV+ HI +LR+KL G + + R GY + Sbjct: 183 KIWN-YHFDPGSNVVDVHIGRLRRKLEEGFGTPILHTVRGAGYRL 226 >gi|317495281|ref|ZP_07953651.1| response regulator receiver domain-containing protein [Gemella moribillum M424] gi|316914703|gb|EFV36179.1| response regulator receiver domain-containing protein [Gemella moribillum M424] Length = 238 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 39/230 (16%), Positives = 86/230 (37%), Gaps = 14/230 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++IDD ++ I +G ++ ++ + ++ L Sbjct: 6 LVIDDEERIRKLLIMYLEKEGYIVDEASNGQDGLERLKYMDYSCVLLDVHLPI--LNGKS 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL---------ARVA 113 + +R P+I +S Q+ ++ F+ G DD V KP RE++ + + Sbjct: 64 ILSELRKTKATPVIIMSAQADEQSRVEGFELGADDYVIKPFSPRELMLRINAILQRTKRS 123 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 Y + + + + + V+ L +E +L +L + K + +I Sbjct: 124 VFYTPELYTKDVLVFPGLIIDVNSHKVIVEDTEVLLTPKEFDLLLFLAKSPDKAFRRNEI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF--DPVDSKRFLGYSID 221 A++ +D + V++HI ++RKK + + +GY D Sbjct: 184 LRAVWD-YDFYSDLRTVDTHIKRVRKKFDKISPKVSKMIVTVWGIGYKFD 232 >gi|261406258|ref|YP_003242499.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|329922002|ref|ZP_08277809.1| putative sensory transduction protein RegX3 [Paenibacillus sp. HGF5] gi|261282721|gb|ACX64692.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] gi|328942462|gb|EGG38725.1| putative sensory transduction protein RegX3 [Paenibacillus sp. HGF5] Length = 232 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 27/224 (12%), Positives = 77/224 (34%), Gaps = 9/224 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D ++ + +G + + L + D+ ++ G E Sbjct: 5 LILEDEESIRSFIVINLKRNGFEVLETENGNEALRLLQTT-PDIDIALLDVMVPGIDGFE 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDF------FDSGVDDVVNKPIHHREILARVAAIY 116 + R IR ++ I + + D + R Sbjct: 64 VCRRIRETNERIGIIFLTAKVQEQDKVYALSVGADDHVSKPFSPTELIARLQSLLRRVNV 123 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 +R + ++GP + + + G+ L E ++++ + +++ + Sbjct: 124 QRAGAAKVSFQSGPFTLDLISKQFKKNGQPVELTPTEFSLVQFFLEKENTPLSRDVLLDH 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219 ++G + + +V+ +I +LR+K+ N + + + GY Sbjct: 184 VWGK-EYMGDPKIVDVNIRRLRQKIEGNPSEPEYLQTVWGHGYK 226 >gi|325841247|ref|ZP_08167348.1| response regulator receiver domain protein [Turicibacter sp. HGF1] gi|325489928|gb|EGC92275.1| response regulator receiver domain protein [Turicibacter sp. HGF1] Length = 230 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 45/229 (19%), Positives = 87/229 (37%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD ++ L DG + + E L + + + + + + Sbjct: 5 ILVADDNQDIRQILQILLTGDGYEVVTACNGEEAIELMDES---IGLVILDVEMPKKSGI 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV--------A 113 + IR S VP++ ++ Y F +G DD + KP + ++L RV Sbjct: 62 VVCSEIRQKSFVPILFLTAYGQESDKTMGFSAGGDDYITKPFSNSDLLIRVKALLRRAYQ 121 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 G + V + ++G+ L E +IL L+ +R K + QI Sbjct: 122 YHSTTQVKVEPTITIGDLVVDLNSTRVILEGKEVSLTTTEYKILRLLITHRKKIFSMEQI 181 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 + +I+ + + +N V H+ LRKK+ + + GY +D Sbjct: 182 YQSIWNDSGQVIGDNAVMVHVRNLRKKIEKDSKNPVYIKTAWGKGYYVD 230 >gi|163814295|ref|ZP_02205684.1| hypothetical protein COPEUT_00446 [Coprococcus eutactus ATCC 27759] gi|158449930|gb|EDP26925.1| hypothetical protein COPEUT_00446 [Coprococcus eutactus ATCC 27759] Length = 244 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 45/227 (19%), Positives = 85/227 (37%), Gaps = 9/227 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD ++ G + + D+ I ++ E Sbjct: 19 LVVDDEQDIRTLLNIYLKRLGYEVVEAADGVEAVETVRANS-DIDLIVMDIMMPKLSGTE 77 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 IR S VP++ ++ + + G DD + KP + +V A+ RR +V Sbjct: 78 ACEQIREFSSVPVLFLTAKTKEPDQNEAYVVGGDDFLPKPFTQNDFNRKVNALIRRYRVY 137 Query: 123 N-------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 G I + S R GE+ L +E +L +L+ +RGK + ++ Sbjct: 138 RGKSEVDAKNITVGNISIDSFKRIVTKNGEIVKLTDKEYALLFFLVEHRGKPWSLEALYE 197 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221 I+ N V HI +LR+K+ + + + + GY +D Sbjct: 198 NIWQEKYLPSSSNTVMVHILRLRQKIEDNSAQPEIIRTIYGKGYQVD 244 >gi|50085985|ref|YP_047495.1| transcriptional regulator [Acinetobacter sp. ADP1] gi|49531961|emb|CAG69673.1| transcriptional regulator [Acinetobacter sp. ADP1] Length = 226 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 50/226 (22%), Positives = 91/226 (40%), Gaps = 14/226 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D ++ + I L +E N+ + D+ ++ L + Sbjct: 4 ILIIEDDFMIAESTITLLKYHQFEVEWVNNGFDGLAHLAKQSFDLVLLDLGLPM--MDGM 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-------REILARVAA 114 ++ + IR + VP++ IS L+ ++ + G DD + KP +L R + Sbjct: 62 QVLKQIRQKTGVPVLIISARDQLENRVEGLNQGADDYLIKPYEFDELLARINALLRRTNS 121 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + G + + + QG+ L RE IL LM + K +K + Sbjct: 122 KDASSLQQDQVLSNGEVILNVEKHIATFQGKEIELSNREWAILIPLMTHPNKIFSKANLE 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +Y FD V N +E +I LR KL G + + + R LGY + Sbjct: 182 DKLYD-FDSEVTSNTIEVYIHHLRSKL----GKNFIRTIRGLGYRL 222 >gi|146279972|ref|YP_001170130.1| hypothetical protein Rsph17025_3971 [Rhodobacter sphaeroides ATCC 17025] gi|145558213|gb|ABP72825.1| hypothetical protein Rsph17025_3971 [Rhodobacter sphaeroides ATCC 17025] Length = 224 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 50/223 (22%), Positives = 94/223 (42%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L +D + +G S++ + D+ I+ G L Sbjct: 3 ILLAEDDSQTAAYLRQGLSAEGYSVDHVPDGRDALVQATLQPYDLLVIDRM--MPGLDGL 60 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L + +R A + P++ ++ + ++ +G DD + KP E+ AR+AA+ RR Sbjct: 61 SLVKALRSAQVKAPILILTAMGGVTDRVEGLQAGADDYLVKPFAFSELSARLAALARRPA 120 Query: 121 VSNNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 ++ + + + R G L RE R+LE+LM + G+ +T + A+ Sbjct: 121 LAETSRDVLRVGDLTLDTTRRTATRGGAEIDLQPREFRLLEHLMRSAGRVQTRTMLLEAV 180 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + F +VVE+HIS+LR K+ + + R GY + Sbjct: 181 WD-FHFDPGTSVVETHISRLRAKIDRPFEKPLLHTVRGAGYML 222 >gi|300790732|ref|YP_003771023.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299800246|gb|ADJ50621.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 249 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 52/223 (23%), Positives = 97/223 (43%), Gaps = 9/223 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD A + + +G + + R D ++ L LE Sbjct: 27 LVVDDEATLAELVSMALRMEGWEVRSAGDGTEAVRIAREFRPDAVVLDVML--PDFSGLE 84 Query: 63 LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R +R Q+P++ ++ +++ + +G DD V KP E+ R+ A+ RR Sbjct: 85 VLRRMRSEAPQLPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVALRLRALLRRAGG 144 Query: 122 SN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + G + + D R+ G++ PL E +L YLM N + ++K QI + Sbjct: 145 VTGASGSTLVVGDLTLDEDSREVHRGGDLVPLTATEFELLRYLMRNPKRVLSKAQILDRV 204 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + +D + N+VE +IS LRKK+ + + R GY + Sbjct: 205 WS-YDFGGQANIVELYISYLRKKIDADREP-MIHTMRGAGYVL 245 >gi|296506631|ref|YP_003667865.1| two-component response regulator [Bacillus thuringiensis BMB171] gi|296327218|gb|ADH10145.1| Two-component response regulator [Bacillus thuringiensis BMB171] Length = 226 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 43/223 (19%), Positives = 89/223 (39%), Gaps = 6/223 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D ++++ F DG + + L + ++S + ++ Sbjct: 5 LIVEDEQIIRETVAHYFSHDGYEVITAEDGQIGLDLFAEQEHNISLVILDIMLPLMDGWS 64 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRRL 119 + R IR +S VP+I ++ TL F+ G DD V KP R+ + Sbjct: 65 VCRRIRKNSNVPIILLTARSDEDDTLLGFELGADDYVTKPFKPSILLARAKRLFKDTNQQ 124 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + IR+ R + G+ E IL LM ++ + + + Q+ + I+G Sbjct: 125 VQYQDCINLCGIRLDKSARSVSIDGQKIDFTHTEYEILHSLMQHKEQVLTREQLITNIWG 184 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D ++ + +H+ +R KL K + + GY + Sbjct: 185 -YDYDGDDKTLTAHMRNVRLKLGEK--AKHIITVVRTGYKFEV 224 >gi|268507216|ref|YP_003294015.1| response regulator [Escherichia coli ETEC H10407] gi|301050086|ref|ZP_07196995.1| response regulator receiver domain protein [Escherichia coli MS 185-1] gi|266265537|dbj|BAI49241.1| response regulator [Escherichia coli ETEC H10407] gi|300298188|gb|EFJ54573.1| response regulator receiver domain protein [Escherichia coli MS 185-1] gi|309705589|emb|CBJ04441.1| putative two-component response regulator [Escherichia coli ETEC H10407] Length = 240 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 47/228 (20%), Positives = 91/228 (39%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + D+G + L D ++ L L Sbjct: 7 ILLVEDDYDIATLLRLNLQDEGYQIVHEADGAKSLALLEKQVWDAVLLDLML--PNVDGL 64 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R IR +P+I IS S + + G DD + KP +E++ARV A++RR + Sbjct: 65 EICRRIRQMAGYLPVIIISARTSEIHRILGLEMGADDYLPKPFSVQELIARVKALFRRQE 124 Query: 121 VSNNR-------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + R+ + GE+ L RE +L + + G+ ++ + Sbjct: 125 AMGQNIRLEGGLIRCHGLHIDPLAREVRLCGELIDLTPREFDLLYWFARHPGEVFSRLSL 184 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++G + E+ V +HI++LR K+ + + + + GY Sbjct: 185 LDNVWG-YQHEGYEHTVNTHINRLRTKIEHDAAEPEIILTVWGKGYKF 231 >gi|255279926|ref|ZP_05344481.1| regulatory protein VanR [Bryantella formatexigens DSM 14469] gi|255269699|gb|EET62904.1| regulatory protein VanR [Bryantella formatexigens DSM 14469] Length = 236 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 39/230 (16%), Positives = 77/230 (33%), Gaps = 14/230 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++I+D A +++G L + + + + D+ ++ G L Sbjct: 7 LIIEDDADIREGVRILLESENYCVREAENGRKGLEMLEDTT-DLVILDIM--MPGMSGLR 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILARV 112 IR S VP++ ++ L +G DD + KP + Sbjct: 64 TCEEIRRVSNVPVLFLTAKAQESDKLIGLMAGGDDYLPKPFSYAELLGRVKALLRRYRVY 123 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 E G IR+ + V G + + E +L +M + G+ + Sbjct: 124 MGKTGESTEKETYLERGGIRIHETFNEVWVDGVLKEMTDIEYHMLLLMMQHPGRIFSAQN 183 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221 ++ +I+ + + HI KLR K+ + + GY D Sbjct: 184 LYESIWEEPYFYSCNSTIMVHIRKLRVKIEADPKYPKYIRTVWGKGYKFD 233 >gi|125975295|ref|YP_001039205.1| two component transcriptional regulator [Clostridium thermocellum ATCC 27405] gi|256003046|ref|ZP_05428038.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 2360] gi|125715520|gb|ABN54012.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum ATCC 27405] gi|255992737|gb|EEU02827.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 2360] gi|316939457|gb|ADU73491.1| two component transcriptional regulator, winged helix family [Clostridium thermocellum DSM 1313] Length = 231 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 88/228 (38%), Gaps = 10/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD + D +G ++ ++ + + + ++ L Sbjct: 6 ILVCDDDKAIVDALEIYLKQEGYNVVKAHTGKQALKALEEEKIHLVLMDVM--MPELDGL 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 IR +P+I +S + + G DD V KP + E++ARV + RR Sbjct: 64 SATVKIREELNIPIIILSAKSEDTDKIIGLNFGADDYVTKPFNPLELVARVKSQLRRYTQ 123 Query: 122 SNNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + ++ ++ V GE+ L E I+ +LM N GK + QI+ Sbjct: 124 LGGAERKSGVLKNGGLELDTEAKELRVDGELVKLTATEYGIVLFLMKNAGKVFSIDQIYE 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 ++ + EN V HI ++R+K+ N + +GY ++ Sbjct: 184 NVWKEPAYS-SENTVAVHIRRIREKIEINPKEPKYLKVVWGIGYKMEK 230 >gi|330888178|gb|EGH20839.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. mori str. 301020] Length = 267 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 48/225 (21%), Positives = 92/225 (40%), Gaps = 9/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD +++ ++ G + DV ++ L GE L Sbjct: 41 LIVDDDVAIRELLCDYLTRFNINARGVTDGTQMRQALTDETFDVVVLDLML--PGEDGLS 98 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R +R+ S +P++ ++ + + G DD + KP RE++AR+ I RR++ Sbjct: 99 LCRWLRSTSDIPILMLTARCEPTDRIIGLELGADDYMAKPFEPRELVARIQTILRRVRDE 158 Query: 123 NNRAETGPIRVFSD-----GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + T + G V PL E R+L + + +++ Q+ A Sbjct: 159 RSDQRTTIRFDAWRLNSVLRQLTAADGLVVPLSNAEFRLLRVFLERPHRVLSREQLLDAA 218 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 G EA + ++ +S+LR+KL + + + R GY D Sbjct: 219 RGRSIEAFD-RSIDLLVSRLRQKLGDDPKNPQLIKTVRGEGYLFD 262 >gi|300310849|ref|YP_003774941.1| two component transcription regulator protein [Herbaspirillum seropedicae SmR1] gi|300073634|gb|ADJ63033.1| two component transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 248 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 44/229 (19%), Positives = 87/229 (37%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ +G+ + + +R D+ ++ L GE L Sbjct: 10 ILVVDDDRDIRTLLAEYLDSNGLRTLTATNGSEMRRVLEESRVDLIVLDLTL--PGEDGL 67 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R +RA S VP+I ++ + + G DD + KP RE+ AR+ ++ RR + Sbjct: 68 TLCRNLRATSSVPVIMLTARGEPLDRILGLEMGADDYLAKPFEPRELFARIRSVLRRTQA 127 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF---------PLPRRERRILEYLMANRGKRVAKTQ 172 + L E R+L+ + + + + + Q Sbjct: 128 LPPNMAQPDVAAMRFAGWTLDLTARHLVNRDGVVVALSGAEFRLLKVFLDHPNRVLNRDQ 187 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 + G + + V+ IS+LR+KL + + + R GY + Sbjct: 188 LLELTQGR-ESDPFDRSVDIQISRLRQKLGDDARTPTIIKTVRNEGYVL 235 >gi|300693546|ref|YP_003749519.1| response regulator in two-component regulatory system with cops, regulation of copper resistance [Ralstonia solanacearum PSI07] gi|299075583|emb|CBJ34876.1| response regulator in two-component regulatory system with CopS, regulation of copper resistance [Ralstonia solanacearum PSI07] Length = 228 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 43/223 (19%), Positives = 96/223 (43%), Gaps = 6/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A + + G ++ + L + D+ ++ L Sbjct: 3 LLVVEDEAKTGEYLQQGLTEAGFVVDLARNGVDGLHLAMTGDYDLLVLDVML--PDLDGW 60 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118 ++ + +RA VP++ ++ S+ + + G DD + KP E+LARV Sbjct: 61 QIVQSLRAAERAVPVLFLTARDSVGDRVKGLELGADDYLVKPFAFAELLARVRTLLRRGS 120 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 V+ +R + + + R G+ L +E +LE L RG+ + ++ I S ++ Sbjct: 121 TPVALDRIQIADLVLDLARRRASRSGQRIALTSKEFALLELLARRRGEVLPRSLIASQVW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + + NV++ I +LR K+ + + + R +GY ++ Sbjct: 181 DM-NFDSDTNVIDVAIRRLRAKIDDDFAPKLIQTVRGMGYVLE 222 >gi|292900777|ref|YP_003540146.1| two-component response regulator [Erwinia amylovora ATCC 49946] gi|291200625|emb|CBJ47757.1| two-component response regulator [Erwinia amylovora ATCC 49946] Length = 219 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 46/223 (20%), Positives = 94/223 (42%), Gaps = 9/223 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D L++ G +G +++ + S + + ++ L Sbjct: 3 ILIVEDDTLLQQGLNLALTGEGYAVDCAANAAQGTAFLQSGQYSLVVLDLGL--PDRDGA 60 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +L R R +P++ +S +L +D D+G DD + KP E+ ARV A+ RR + Sbjct: 61 DLLRQWRKEQQDLPVLILSARDALSDRVDGLDAGADDYLMKPFALAELKARVRALIRRYQ 120 Query: 121 VSNNRAETGPIRVFS-DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++ + + V + + +E +L L+ G+ V + + +Y Sbjct: 121 GQSDNLLQHGDITLNLSSQQVAVDLQPVDVTPKEFSLLTRLLMRIGQTVHRETLQQDLYS 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 D N +E H+ LR+KL G D + + R +GY ++ Sbjct: 181 WQD-DTSSNTLEVHMHNLRRKL----GKDRIKTVRGVGYRLEE 218 >gi|148543356|ref|YP_001270726.1| two component transcriptional regulator [Lactobacillus reuteri DSM 20016] gi|184152766|ref|YP_001841107.1| two-component response regulator [Lactobacillus reuteri JCM 1112] gi|194467516|ref|ZP_03073503.1| two component transcriptional regulator, winged helix family [Lactobacillus reuteri 100-23] gi|227364430|ref|ZP_03848520.1| response regulator [Lactobacillus reuteri MM2-3] gi|325683629|ref|ZP_08163145.1| response regulator [Lactobacillus reuteri MM4-1A] gi|148530390|gb|ABQ82389.1| two component transcriptional regulator, winged helix family [Lactobacillus reuteri DSM 20016] gi|183224110|dbj|BAG24627.1| two-component response regulator [Lactobacillus reuteri JCM 1112] gi|194454552|gb|EDX43449.1| two component transcriptional regulator, winged helix family [Lactobacillus reuteri 100-23] gi|227070523|gb|EEI08856.1| response regulator [Lactobacillus reuteri MM2-3] gi|324977979|gb|EGC14930.1| response regulator [Lactobacillus reuteri MM4-1A] Length = 229 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 41/227 (18%), Positives = 89/227 (39%), Gaps = 9/227 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + ++G + ++ D+ I L+ + Sbjct: 3 ILVVDDDKEIVQLLEIYIRNEGYEPISAYDGKEALTKLNTN-PDIGLIILDLMMPEIDGM 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + +R S +P++ +S + + +G DD V KP + E++ARV ++ RR + Sbjct: 62 DVIKRVRKDSDIPILVLSAKTADMDKIQGLITGADDYVTKPFNPLEVMARVKSLLRRSQG 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQG------EVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + V + + +V L E IL L ++ + + IF Sbjct: 122 EVTNDQPDILNVGPLLINKDSHEVKTIKGDVIQLTALEFGILYLLASHPNRVFSADDIFE 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 ++ + V V H+S LR K+ G + + +GY ++ Sbjct: 182 RVW-QQESVVSAKTVMVHVSHLRDKIEEATNGEKVIQTVWGVGYKVE 227 >gi|317123920|ref|YP_004098032.1| transcriptional regulator [Intrasporangium calvum DSM 43043] gi|315588008|gb|ADU47305.1| two component transcriptional regulator, winged helix family [Intrasporangium calvum DSM 43043] Length = 249 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 42/231 (18%), Positives = 83/231 (35%), Gaps = 16/231 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + G S+ + + + DV ++ L G +E Sbjct: 16 LVVDDERALAQMVSTYLARAGYSVSEAYTGPDALSMARALDPDVIVLDLGL--PGLDGVE 73 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH------------HREILA 110 + R IR S ++ ++ + G DD + KP R Sbjct: 74 VCRQIRTFSDCYVLMLTARGDEMDRIIGLSVGADDYITKPFSARELVARVQAVLRRPRQR 133 Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + + G + + GR V G L R E IL+ L A ++ Sbjct: 134 GAGSSRDQAHREEPARLFGDLTIDPAGRSVSVAGSAVLLTRTEFDILDVLSARPKYAFSR 193 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 Q+ ++ + +E++V+ H+ +R+KL + +D+ R +GY + Sbjct: 194 RQLIDEVWDIA-WVGDEHIVDVHVGHIRRKLGDDPTTPRYIDTVRGVGYRM 243 >gi|290352167|dbj|BAI78794.1| putative two-component response regulator [Streptococcus pyogenes] Length = 228 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 90/224 (40%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + +G + + D+ ++ L Sbjct: 5 ILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLML--PEMYGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R ++ ++ ++ S+ + D G DD + KP E+LAR+ AI+RR + Sbjct: 63 EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122 Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + R + L +RE +L LM N + + + ++ S Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +DEAVE NVV+ +I LR K+ + + R +GY I Sbjct: 183 VW-KYDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225 >gi|302874054|ref|YP_003842687.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] gi|307689692|ref|ZP_07632138.1| two component transcriptional regulator, winged helix family protein [Clostridium cellulovorans 743B] gi|302576911|gb|ADL50923.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] Length = 230 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 37/223 (16%), Positives = 91/223 (40%), Gaps = 6/223 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L++D + + G ++G + ++L + + D+ ++ L E Sbjct: 5 LLVEDDSTLAFGIEYTLKNEGFDVILADNLAKARKAFETEKLDIVLLDVTL--PDGNGYE 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVV---NKPIHHREILARVAAIYRRL 119 R IR++S + +I ++ + D G DD + + + V + Sbjct: 63 FCREIRSNSTMAIIFLTSCNDEANVVMGLDLGADDYISKPVRIKELISRINAVMRRNGKA 122 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 N ++G I + + G+ L E R+L L+ + + +++ I ++ Sbjct: 123 VDYANIIKSGNIEINVLKGKVKKAGKEIILTAVEYRLLLTLIEHSEQILSRNTILEKLWD 182 Query: 180 LFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221 + E +++N + +I +LR+K+ + + + R +GY + Sbjct: 183 IDGEFIDDNTLSVYIRRLREKIEDDASAPVHILTVRGVGYKWN 225 >gi|157377522|ref|YP_001476122.1| two component transcriptional regulator [Shewanella sediminis HAW-EB3] gi|157319896|gb|ABV38994.1| two component transcriptional regulator, winged helix family [Shewanella sediminis HAW-EB3] Length = 225 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 50/222 (22%), Positives = 101/222 (45%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D A + + F + G ++E + L +S + D+ ++ L L Sbjct: 3 ILLVEDDATTIEYVVKGFMEQGHNIETASDGHQGLLLATSMKYDLVILDRML--PQLDGL 60 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +L +RA SQ P++ +S + + +G DD + KP E+L R + +R Sbjct: 61 KLLAALRATGSQTPVLILSALSHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMQRGF 120 Query: 121 VSNNRAETGPIRVFSD--GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 E + + R + G L +E ++L+YLM + + +++T +F A++ Sbjct: 121 SQPADTELSVGNLVMELLTRKVTLDGTELMLQPKEFQLLKYLMEHPNQVISRTLLFEAVW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + NV++ HI+KLR+K + +++ R GY + Sbjct: 181 D-YHFDPRTNVIDVHIAKLRRKFEELGFGELIETVRGAGYRL 221 >gi|146310223|ref|YP_001175297.1| DNA-binding response regulator CreB [Enterobacter sp. 638] gi|145317099|gb|ABP59246.1| two component transcriptional regulator, winged helix family [Enterobacter sp. 638] Length = 229 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 50/225 (22%), Positives = 95/225 (42%), Gaps = 8/225 (3%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + L++D + + I + +G +++ F ++ ++ L Sbjct: 5 LIWLVEDEISIAETLIYMLSQEGFAVKAFERGLPALDEAHRQAPALAILDVGL--PDISG 62 Query: 61 LELPRI-IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 EL R + H +P++ ++ L + G DD V KP RE+ ARV I RR+ Sbjct: 63 FELCRQLLAQHPSLPVLFLTARSDEVDKLLGLEMGADDYVAKPFSPREVCARVRTILRRM 122 Query: 120 KV---SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + ++ G + G PL R E +L+ L+ G+ ++ Q+ Sbjct: 123 QKSAAPSDIVRIGQFELNEPAAHISWCGHALPLTRYEFLLLKTLLNAPGRVFSRQQLMDK 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220 ++G ++ + V++HI LR KLR P+ + R +GYS+ Sbjct: 183 VWGDEGDSFD-RTVDTHIKTLRAKLRAINADLSPISTHRGMGYSL 226 >gi|94970126|ref|YP_592174.1| two component transcriptional regulator [Candidatus Koribacter versatilis Ellin345] gi|94552176|gb|ABF42100.1| two component transcriptional regulator, winged helix family [Candidatus Koribacter versatilis Ellin345] Length = 235 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 44/223 (19%), Positives = 86/223 (38%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D +++ + G ++ E L + D I+ L L Sbjct: 13 LLVVEDDLAIQEFLKRALVEAGYQVDVAADGRTAEKLATEGIHDGLIIDLGL--PDIDGL 70 Query: 62 ELP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI---HHREILARVAAIYR 117 +L R + P++ +S S+ + + G DD + KP L + Sbjct: 71 DLIARTRAQGNSAPVLILSARRSVDERVRGLEQGGDDYLTKPFALSELLARLRNLLRRAS 130 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + R + + R+ + V L +E +LEYL N G+ V +T I + Sbjct: 131 PGQHESTRLRIADLELDLVRREAKRGANVLQLTPQEFALLEYLCRNTGRVVTRTMILDHV 190 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + NVV+ HI +LR K+ + + R +GY + Sbjct: 191 WKMR-IDPATNVVDVHIYRLRSKVDRDAPKALIHTIRGVGYVL 232 >gi|258514614|ref|YP_003190836.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] gi|257778319|gb|ACV62213.1| two component transcriptional regulator, winged helix family [Desulfotomaculum acetoxidans DSM 771] Length = 228 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 44/228 (19%), Positives = 91/228 (39%), Gaps = 10/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD + + ++G + ++ L + ++ L Sbjct: 3 ILVCDDDKTIVEAIEIYLENEGYKIFKASNGIEALELIEGNEIHLIIMDIM--MPKMDGL 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 IR +P+I +S + + G DD + KP + E++AR+ + RR + Sbjct: 61 RATMKIREEKNIPVIMLSAKSEDTDKIIGLNLGADDYITKPFNPLELIARIKSQLRRFTI 120 Query: 122 ------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 +N TG + + + + V G+ L + +IL+ L AN G+ + +I+ Sbjct: 121 LGSLESKSNVYSTGGLAIDDESKIITVDGDEIHLTPVQYKILKLLTANAGRVFSIDEIYE 180 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 ++ + E N V HI K+R+K+ N + +GY ++ Sbjct: 181 KVWNETAFSPE-NTVAVHIRKIREKIEINPKEPKYLKVVWGIGYKVEK 227 >gi|255280860|ref|ZP_05345415.1| DNA-binding response regulator VanRB [Bryantella formatexigens DSM 14469] gi|255268797|gb|EET62002.1| DNA-binding response regulator VanRB [Bryantella formatexigens DSM 14469] Length = 232 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 42/228 (18%), Positives = 85/228 (37%), Gaps = 14/228 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D ++ +G + D+ ++ L Sbjct: 4 ILVIEDDEDIQKILKNYLCGNGYGVVLAGDGVEGIHKFHEHTCDLVLLDVML--PKIDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR-------EILARVAA 114 + +IR S+VP++ ++ + + D DD + KP + +L R Sbjct: 62 GVLELIRRESEVPVMMLTALEEEEYQIRGLDLKADDYITKPFSVQVLLRKIAAVLRRANR 121 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + ++ P L ++E +L L+ N+G + + ++ Sbjct: 122 DAGQEQIVYKNLRLDPAGHHVYVGQENGDITEPELTQKEFELLHVLLINKGIVLTRQKLL 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + ++G D EE +V++HI LRKKL G + + R +GY ID Sbjct: 182 NLVWGE-DYFGEERIVDTHIKNLRKKL----GPGCISTIRGVGYRIDK 224 >gi|261854834|ref|YP_003262117.1| transcriptional regulator [Halothiobacillus neapolitanus c2] gi|261835303|gb|ACX95070.1| two component transcriptional regulator, winged helix family [Halothiobacillus neapolitanus c2] Length = 262 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 40/227 (17%), Positives = 85/227 (37%), Gaps = 10/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ + G + S + +A V + ++ GE L Sbjct: 17 ILVVDDDPGIQTLLGRYLREQGFDVRVVGSGAE-MDIALAADPRVDLLVLDIMLPGEDGL 75 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-------ILARVAA 114 + R + ++ P+I +S + + G DD V KP + RE +L R Sbjct: 76 SIARRLDPKTRPPVIMLSARGEDIDRIVGLEIGADDYVPKPFNPRELLARIRAVLRRQRM 135 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + R G + R + L E ++L++ M + + + QI Sbjct: 136 EPDARGKQDERIRVGDFAIDPQTRQAFLSDGALDLTHGEWQLLQFFMERPNRVINRDQIM 195 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + G ++ + + ++ I++LR+K+ N + + GY Sbjct: 196 DYLKG-YERSAFDRSIDVRITRLRRKIETNPTEPRYLVTIWGEGYLF 241 >gi|222111390|ref|YP_002553654.1| winged helix family two component heavy metal response transcriptional regulator [Acidovorax ebreus TPSY] gi|330825948|ref|YP_004389251.1| two component heavy metal response transcriptional regulator [Alicycliphilus denitrificans K601] gi|221730834|gb|ACM33654.1| two component heavy metal response transcriptional regulator, winged helix family [Acidovorax ebreus TPSY] gi|329311320|gb|AEB85735.1| two component heavy metal response transcriptional regulator, winged helix family [Alicycliphilus denitrificans K601] Length = 228 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 36/225 (16%), Positives = 91/225 (40%), Gaps = 8/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + ++G +E ++ L D+ ++ L G + Sbjct: 3 LLIVEDEIKLAEYLRKGLSEEGYVVEVAHNGVDGLHLAMEGAYDLIVLDGML--PGIDGM 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116 + +R Q P++ ++ ++ + +G DD + KP E++AR + Sbjct: 61 GVLAALRQSRQTPVLMLTARMRVEDRVRGLKAGADDYLVKPFAFTELVARIEVLLKRSHP 120 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + R E G+ L +E ++L L+ +G+ +++ +I Sbjct: 121 LPASHEALTLAIDDLHMDLVRRRVERAGKRLNLTAKEFQLLSLLLRRQGEVLSRAEIAEQ 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ + + NV++ I +LR K+ + + R +GY ++ Sbjct: 181 VWDV-NFDHGTNVIDVAIRRLRAKMDTPFDRPLLHTVRGMGYVLE 224 >gi|218134085|ref|ZP_03462889.1| hypothetical protein BACPEC_01975 [Bacteroides pectinophilus ATCC 43243] gi|217991460|gb|EEC57466.1| hypothetical protein BACPEC_01975 [Bacteroides pectinophilus ATCC 43243] Length = 240 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 43/236 (18%), Positives = 95/236 (40%), Gaps = 20/236 (8%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G + ++ S D+ ++ L L Sbjct: 5 ILIVEDEEQIARFLELELMHEGYTTCKADNGRSGLETAQSGECDLVLLDVML--PELNGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R S +P+I ++ ++ + D+G DD + KP E+LAR+ ++ + Sbjct: 63 EVLRRLRRTSNLPVIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRRALKKSSM 122 Query: 122 SNNR-----------------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANR 164 ++ G +++ V L +RE +L+ L+ N Sbjct: 123 ADGAGTDGRSADDVKEAAVLANGDGRVKLDKKQHIVTVDCNNVELTQREFAMLQTLLENM 182 Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +++ + + G +D E N+V+ ++ LR K+ + G + + R +GY I Sbjct: 183 DIVLSRETLLDKVCG-YDYVGETNIVDVYVRYLRSKIDDAFGIKLIQTVRGVGYVI 237 >gi|167767348|ref|ZP_02439401.1| hypothetical protein CLOSS21_01867 [Clostridium sp. SS2/1] gi|317497415|ref|ZP_07955737.1| response regulator receiver domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] gi|167711323|gb|EDS21902.1| hypothetical protein CLOSS21_01867 [Clostridium sp. SS2/1] gi|291559353|emb|CBL38153.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [butyrate-producing bacterium SSC/2] gi|316895335|gb|EFV17495.1| response regulator receiver domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 223 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 43/221 (19%), Positives = 86/221 (38%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D +++ + S++ E D ++ L G+ Sbjct: 3 ILVVEDEKDLRNIIKKRLVREHYSVDACGDGEEALDYMEMTSYDGVLLDIML--PGKDGF 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + + +R P++ ++ ++ + D G DD + KP E+LAR+ + RR Sbjct: 61 AVLKEVRQMGNDTPILLLTARDGIEDRVKGLDLGADDYLIKPFAFEELLARIRVMMRRKP 120 Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + D R G+ L +E +LE LM N+ + + QI + Sbjct: 121 QFVTNQLKIADLTLDRDTRIVTRAGKEISLSSKEFMVLECLMRNQNIVMTRQQIEQNAW- 179 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D NV++ +I LRKK+ + + R GY + Sbjct: 180 NYDYEGGSNVIDVYIRYLRKKIDAGYEKKLIHTVRGTGYVM 220 >gi|149376013|ref|ZP_01893779.1| DNA-binding response regulator GltR [Marinobacter algicola DG893] gi|149359650|gb|EDM48108.1| DNA-binding response regulator GltR [Marinobacter algicola DG893] Length = 238 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 49/225 (21%), Positives = 90/225 (40%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ G + + S AR D+ ++ L G+ Sbjct: 8 ILVVDDDLAIRELLHEHLSRVGYDVMTAAEGDSMRRTLSEARVDLIVLDVML--PGDDGF 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R IR HSQVP+I ++ + + G DD + KP RE+ ARV A+ RR Sbjct: 66 TLCREIREHSQVPIIMLTASSDETDRVVGLEIGADDYLAKPFSARELQARVKALLRRSGF 125 Query: 122 SNNRAETGPIRVFSDGRDPEV-----QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + QGE PL + +L+ + + + + + I Sbjct: 126 NRADNPRFVCFDRWRLDTQAHELISDQGETTPLSGADFSLLQLFLTHPNEVLDRDTISGV 185 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 G + + VV+ +S+LR++L ++ + + R GY + Sbjct: 186 TRGR-ESMPLDRVVDVAVSRLRQRLGDQGRSPRLIKTVRGAGYLL 229 >gi|119493491|ref|ZP_01624158.1| Two component Transcriptional regulator, Winged helix family protein [Lyngbya sp. PCC 8106] gi|119452674|gb|EAW33854.1| Two component Transcriptional regulator, Winged helix family protein [Lyngbya sp. PCC 8106] Length = 224 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 41/222 (18%), Positives = 85/222 (38%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + ++ E S D+ ++ L + Sbjct: 3 ILLVEDDQRIAKALSRSLQTQNYVIDVALEGEAGWEFVQSFEYDLIVLDVML--PKLNGI 60 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119 L + IR +P++ ++ S Q + D+G DD V KP E+ AR+ A + R Sbjct: 61 NLCQRIRQAGYTMPVLMLTAKDSSQDKVIGLDAGADDYVVKPFDLPELAARIRALLRRGT 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + + + + L +E +LE + N + +++ I ++ Sbjct: 121 SILPPILAWEKLSLNPNTCEVTYNQHPLHLTPKEYGLLELFLHNPQRVFSRSNILEHLWS 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 D E V+ HI +R+KL+ D +++ +GY + Sbjct: 181 FED-PPSEEAVKVHIKDIRRKLKTVGAPPDLIETVYGMGYRL 221 >gi|15596834|ref|NP_250328.1| two-component response regulator KdpE [Pseudomonas aeruginosa PAO1] gi|107101068|ref|ZP_01364986.1| hypothetical protein PaerPA_01002099 [Pseudomonas aeruginosa PACS2] gi|218892408|ref|YP_002441275.1| two-component response regulator KdpE [Pseudomonas aeruginosa LESB58] gi|254234736|ref|ZP_04928059.1| two-component response regulator KdpE [Pseudomonas aeruginosa C3719] gi|254239983|ref|ZP_04933305.1| two-component response regulator KdpE [Pseudomonas aeruginosa 2192] gi|9947605|gb|AAG05026.1|AE004591_6 two-component response regulator KdpE [Pseudomonas aeruginosa PAO1] gi|126166667|gb|EAZ52178.1| two-component response regulator KdpE [Pseudomonas aeruginosa C3719] gi|126193361|gb|EAZ57424.1| two-component response regulator KdpE [Pseudomonas aeruginosa 2192] gi|218772634|emb|CAW28417.1| two-component response regulator KdpE [Pseudomonas aeruginosa LESB58] Length = 230 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 49/223 (21%), Positives = 91/223 (40%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LIDD ++ G + + E + R D+ ++ L Sbjct: 8 ILLIDDEPQIRKFLRISLNAQGYRVLEAGTGEEGLAQAALNRPDLVVLDLGL--PDRDGQ 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 ++ R +R SQVP++ +S S + D G +D V KP +E LARV + Sbjct: 66 DILRDLREWSQVPVLVLSVRASEGEKVLALDGGANDYVTKPFGIQEFLARVRVLLRQAAQ 125 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + GP++V R ++G L R+E +L L + G+ V + Q+ I+ Sbjct: 126 GESPEASVAVGPLQVDFAYRRVTLEGAEVALTRKEYAVLAALARHLGRVVTQQQLLKDIW 185 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 G + + + + LR+KL + + ++ +GY + Sbjct: 186 GPTHVE-DTHYLRVVVGHLRQKLGDDPASPRFLVTEAGVGYRL 227 >gi|317509453|ref|ZP_07967071.1| response regulator receiver domain-containing protein [Segniliparus rugosus ATCC BAA-974] gi|316252282|gb|EFV11734.1| response regulator receiver domain-containing protein [Segniliparus rugosus ATCC BAA-974] Length = 240 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 45/225 (20%), Positives = 87/225 (38%), Gaps = 10/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + G +++ ++ + + D ++ L G Sbjct: 16 ILIVDDEPNIAYLLRECLLAQGFNVKEAHNPTDALAVVTKEPPDAMILDVML--PGMDGY 73 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-----HHREILARVAAI 115 L R +R P++ ++ SL+ L G DD V KP R + A Sbjct: 74 TLLRRVREMGTECPVLFLTARDSLEDKLTGLTIGGDDYVTKPFSLEEVVARLRVILRRAG 133 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + I + + + G++ L E +L Y M N ++K QI Sbjct: 134 KSDGARESPTLVFEDIELNEETHEVWKAGQLVSLSPTEFTLLRYFMVNARIVLSKRQILE 193 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +D + NVVES++S LR+K+ + + + R +GY + Sbjct: 194 HVW-HYDFGGDMNVVESYVSYLRRKI-DTGEKKMLQTLRGVGYVL 236 >gi|311746326|ref|ZP_07720111.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Algoriphagus sp. PR1] gi|311302500|gb|EAZ80840.2| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Algoriphagus sp. PR1] Length = 234 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 97/228 (42%), Gaps = 12/228 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + D G ++ N + +S D+ ++ L + Sbjct: 7 LVVEDDPNISHLIQIHLNDLGYQIQVCNHGREGFEIANSNPFDLIILDIML--PEMDGIA 64 Query: 63 LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + +RA + P++ I+ + +SG DD + KP RE +ARV AI RR Sbjct: 65 ICQKLRALDNFTPILMITAKSEEIDKVIGLESGADDYITKPFKIREFIARVKAIMRRQDQ 124 Query: 122 SNN-------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N + + + + R + + L +E +L + N G+ ++ ++ Sbjct: 125 FNMVASKEADQLQFNSLEIDEKKRKVLLDEKRMDLTPKEFDLLVLMAKNPGRSYSRGELL 184 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 I+G +D + E+ V +HI++LR K+ + + + + +GY + Sbjct: 185 ELIWG-YDFSGYEHTVNAHINRLRAKIEKDPNNPNFILTTWGVGYRFN 231 >gi|255525634|ref|ZP_05392568.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296185521|ref|ZP_06853931.1| putative regulatory protein VanR [Clostridium carboxidivorans P7] gi|255510724|gb|EET87030.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296050355|gb|EFG89779.1| putative regulatory protein VanR [Clostridium carboxidivorans P7] Length = 224 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 36/226 (15%), Positives = 81/226 (35%), Gaps = 15/226 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++D + +++ + + + + D+ ++ + Sbjct: 6 ILVVDDDKDIRDMINIYLVNQDMNVHTAANGIEALDILENTKVDLIVLDVM--MPKMDGM 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH--------REILARVA 113 + IR VP+I +S + G DD V KP + ++ Sbjct: 64 KACMKIREKLNVPIIILSAKIDDADKILGLTIGADDYVGKPFNPLELLARIKSQLRRYKQ 123 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + + + + ++ + L E +IL L NRGK + I Sbjct: 124 LNNNFKALQEEVIQIDELSINISTHEVFLKDKQIKLTPYEFKILVLLAQNRGKVFSIASI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 + ++ D + V HI ++R+K+ G D + + +GY Sbjct: 184 YENVW-EEDYVASDRTVTVHIRRIREKI----GRDYIKTVWGVGYK 224 >gi|94312408|ref|YP_585618.1| two component transcriptional regulator [Cupriavidus metallidurans CH34] gi|93356260|gb|ABF10349.1| DNA-binding response regulator in two-component regulatory system with EnvZ [Cupriavidus metallidurans CH34] Length = 261 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 50/230 (21%), Positives = 90/230 (39%), Gaps = 14/230 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ G+ EG S D+ ++ L GE L Sbjct: 29 LLIVDDDPQIRAMLAEYLATFGMEAEGAEGGTAMRAAMSKQEYDLVILDLSL--PGENGL 86 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R IR S +P+I ++ L + + G DD V KP RE++AR+ + RR + Sbjct: 87 TLCREIRESSNLPVIMLTARAELADRVVGLEVGADDYVTKPFEMRELVARIHTVLRRSRA 146 Query: 122 SNNRAETGPIRVFSD----------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 R + + + V PL E R+L + + + + + Sbjct: 147 DVRRPAPAAPGHEVRFAAWRLNTTLRQLVDAEDTVVPLSNAEFRLLLTFIEHPNRVLDRE 206 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 + + G D V + ++ +S+LR+KLR+ + + R GY Sbjct: 207 MLINTARGR-DLDVFDRSIDLLVSRLRQKLRDDPRDSALIRTVRGEGYVF 255 >gi|86751280|ref|YP_487776.1| two component transcriptional regulator [Rhodopseudomonas palustris HaA2] gi|86574308|gb|ABD08865.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris HaA2] Length = 241 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 50/224 (22%), Positives = 88/224 (39%), Gaps = 12/224 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L+DD ++D +G + S + D+ ++ GE Sbjct: 21 LLLVDDDRRIRDLLSRFLASEGYRVTTAQSGRDARAKLAGLNFDLLILDVM--MPGETGF 78 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 +L R IR S VP++ ++ + ++ G DD V KP RE+L R+ I +R Sbjct: 79 DLARFIRTESDVPIVMLTARHEAEARIEGLQLGADDYVAKPFEPRELLLRICNILKRTSP 138 Query: 122 SN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + GP D + E L RER +L L A G+ V + ++ Sbjct: 139 APASKAETIAFGPYVFHIDRGELRQGDETIHLTDRERDMLRVLAAAPGETVPRGELT--- 195 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 E V+ I++LR+K+ + + + R +GY + Sbjct: 196 --GGGGNANERAVDVQINRLRRKIERDPANPLFLQAVRGIGYRL 237 >gi|91794885|ref|YP_564536.1| osmolarity response regulator [Shewanella denitrificans OS217] gi|91716887|gb|ABE56813.1| two component transcriptional regulator, winged helix family [Shewanella denitrificans OS217] Length = 240 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 35/229 (15%), Positives = 84/229 (36%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ + G + + E + L + ++ L GE L Sbjct: 8 ILVVDDDMRLRSLLERYLVEQGYQVRSAANAEQMDRLLERENFHLLVLDLML--PGEDGL 65 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112 + R +R + P++ ++ + + G DD + KP + RE + + Sbjct: 66 SICRRLRQQNNPIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQA 125 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + G + R+ E L E +L+ L+ + + +++ + Sbjct: 126 PKVPGAPAQEEESVSFGEFSLNLATREMYRGEESIALTSGEFAVLKVLVNHPREPLSRDK 185 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + + G D + E ++ +S+LR+ + + + + LGY Sbjct: 186 LMNLARGR-DYSALERSIDVQVSRLRRLIEKDATSPRYIQTVWGLGYVF 233 >gi|71277942|ref|YP_269189.1| DNA-binding response regulator [Colwellia psychrerythraea 34H] gi|71143682|gb|AAZ24155.1| DNA-binding response regulator [Colwellia psychrerythraea 34H] Length = 242 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 48/231 (20%), Positives = 91/231 (39%), Gaps = 15/231 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD L + + F ++G + + E E L D+ ++ G+ L Sbjct: 7 ILIVDDDELTRQVLSSYFENEGYDVSCATTAEEAEELLILGTVDLILLDI--RMPGKDGL 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R +R +++V +I ++ L + G D+ V KP + REILAR + RR+++ Sbjct: 65 TLTRELRVNNEVGIILVTGSQDEVDRLIGLECGADEYVTKPFNPREILARAKNLIRRVRL 124 Query: 122 SNNRAETGPIRVFSDGRDPEV-----------QGEVFPLPRRERRILEYLMANRGKRVAK 170 D + L E ++L+ LM + G+ + + Sbjct: 125 CQKVKSADNDDYILKAFDCWKLNPVRRQLIDEEQTTVQLTEGEFQLLKCLMDHVGQIMTR 184 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 QI I + + V+ I +LR+KL + + + GY Sbjct: 185 DQILDQIRNR-EWVPTDRTVDVLIGRLRRKLGDDSTNPRLILTVHGAGYLF 234 >gi|114561672|ref|YP_749185.1| two component transcriptional regulator, winged helix family protein [Shewanella frigidimarina NCIMB 400] gi|114332965|gb|ABI70347.1| two component transcriptional regulator, winged helix family [Shewanella frigidimarina NCIMB 400] Length = 244 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 46/224 (20%), Positives = 92/224 (41%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + I S++ +L+ + + D+ ++ L + Sbjct: 16 ILLVEDEQDLAKLIILNLKALNYSVDHATTLKQAMHIIEHKKLDLILMDRML--PDGDGI 73 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117 L +R +VPL+ ++ S + ++G DD + KP E+ ARV + Sbjct: 74 MLCEQLRQDGKEVPLMLLTAKDSEADVVLGLEAGADDYLVKPFSVLELRARVKALLRRGK 133 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + E + + S R+ + L RE +L +L + + ++ Q+ A+ Sbjct: 134 TQHEQTQQIEFNSVSINSSTREVTAFNKALTLTAREFDLLLFLAKHPQQVFSRMQLLEAV 193 Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 +G ++ E+ V SHI++LR KL D V + +GY Sbjct: 194 WG-YNYDGYEHTVNSHINRLRNKLSLCSPEHDLVKTVWGVGYKF 236 >gi|239981817|ref|ZP_04704341.1| two-component system reponse regulator [Streptomyces albus J1074] gi|291453676|ref|ZP_06593066.1| two-component system response regulator [Streptomyces albus J1074] gi|291356625|gb|EFE83527.1| two-component system response regulator [Streptomyces albus J1074] Length = 225 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 43/223 (19%), Positives = 85/223 (38%), Gaps = 6/223 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L +D A + + +G +E D+ ++ L G LE Sbjct: 5 LLAEDDASISEPLARALRREGYEVEVRQDGPTALDAGLRGGVDLVVLDLGL--PGMDGLE 62 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-HREILARVAAIYRRLK 120 + R +R+ P++ ++ T+ D+G DD V KP + A + R Sbjct: 63 VARRLRSDGHTVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAA 122 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 T +R+ + + E L +E +L L+ + G+ V + Q+ ++ Sbjct: 123 EPPQPTATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 182 Query: 181 FDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222 + ++ HIS LRKKL + + + R +G+ + Sbjct: 183 TWWS-STKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEK 224 >gi|218677215|ref|YP_002396034.1| putative DNA-binding response regulator [Vibrio splendidus LGP32] gi|218325483|emb|CAV27655.1| putative DNA-binding response regulator [Vibrio splendidus LGP32] Length = 224 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 37/223 (16%), Positives = 93/223 (41%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++I+D ++ + G +++ + + S+ + ++ L G KV Sbjct: 3 ILIIEDDTTTREFVAKGLEEHGYAVDQAEDGKKGLMMALSSEYQLVILDRMLPYLDGMKV 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI---HHREILARVAAIYR 117 L + +P++ +S S++ + +G DD + KP + + + Sbjct: 63 LSAIKATEE--NLPVLILSAMDSVEDRVSGLQAGSDDYLIKPFALAELVARVDIIINRTK 120 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 R V+ + + + + L +E ++++Y + + + V++ ++F AI Sbjct: 121 RQPVTETNLIYDCLDIDLRAHRVVCKNQDLQLQPKEFQLIQYFVEHSEQVVSRMRLFEAI 180 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + + NV++ H++ LR+KL D + + R GY + Sbjct: 181 WS-YHFDPKTNVIDVHVANLRRKLEEAGCPDLLHTVRGAGYVL 222 >gi|332185092|ref|ZP_08386841.1| response regulator [Sphingomonas sp. S17] gi|332014816|gb|EGI56872.1| response regulator [Sphingomonas sp. S17] Length = 235 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 54/231 (23%), Positives = 85/231 (36%), Gaps = 15/231 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 L+DD + +G + E D++ + L Sbjct: 5 IALVDDDRNILTSVSIALQAEGFLTRIYADGEAALKALIDNPPDLAIFDI--KMPRMDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL R +R SQ+P+I ++ G DD + KP R ++AR+ AI RR + Sbjct: 63 ELLRRLREKSQIPVIFLTSKDDELDEALGLAMGADDYIAKPFSQRLLIARIRAILRRSEG 122 Query: 122 SNNRAETGPIR-----------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 S+ T + +GE L E ILE L G + Sbjct: 123 SSQTPGTPAAEVQGPLTRGQLAMDPARHKVTWKGEPVTLTVTEFLILETLAQRPGIVRTR 182 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 Q+ A Y D V++ ++SHI +LR+K R FD +++ GY Sbjct: 183 NQLMDAAY-QDDIYVDDRTIDSHIKRLRRKFRQVDPEFDAIETLYGAGYRF 232 >gi|330940315|gb|EGH43425.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 230 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 43/223 (19%), Positives = 89/223 (39%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD ++ G + + + + D+ ++ L Sbjct: 7 ILVIDDEPQIRKFLRISLVSQGYKVLEAATGAEGLTQAALNKPDLLVLDLGL--PDMDGQ 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 ++ R S VP++ +S S + D+G +D V KP +E LAR+ Sbjct: 65 QVLSEFREWSAVPVLVLSVRASEAQKVQALDAGANDYVTKPFGIQEFLARIRALLRQASG 124 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + ++ E GP+ V R + G+ L R+E +L L + G+ + + Q+ I+ Sbjct: 125 SEKPDSALEFGPLTVDLAYRRVLLDGQEVALTRKEYAVLAQLARHPGRVITQQQLLKDIW 184 Query: 179 GLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220 G + + + + LR+KL + + ++ +GY + Sbjct: 185 GPTHTE-DSHYLRIVVGHLRQKLADDPTAPRFILTEPGIGYRL 226 >gi|331091527|ref|ZP_08340364.1| hypothetical protein HMPREF9477_01007 [Lachnospiraceae bacterium 2_1_46FAA] gi|330403692|gb|EGG83246.1| hypothetical protein HMPREF9477_01007 [Lachnospiraceae bacterium 2_1_46FAA] Length = 225 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 46/223 (20%), Positives = 97/223 (43%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + +G L +G E S+ + + ++ L Sbjct: 4 ILIIEDDRHIGEGLQFLLESEGYCAELAMSVSEGREKLEKGKTQLLILDVNL--PDGSGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E + I ++P+I ++ + + F+ G D+ + KP RE+++RV + R + Sbjct: 62 EFFQKI-QSKKIPVIFLTALDEEKNIVKGFNLGADEYITKPFRPRELVSRVKNVIRLTGI 120 Query: 122 SNNRAE---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++R + G + + + + G+ L E ++L NRG+ + + QI S I+ Sbjct: 121 EDSRKQELIIGNVSIHLEEKVAYKNGKQLELTALEYKVLLLFFENRGRILTRNQILSHIW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 V +N + +I +LR+K+ + D + + R +GY I Sbjct: 181 DDSGNFVNDNTLTVYIKRLREKIEDNPYEPDIIKTVRGMGYKI 223 >gi|319780662|ref|YP_004140138.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317166550|gb|ADV10088.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 230 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 44/225 (19%), Positives = 81/225 (36%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD +++ G+ G D+ ++ L Sbjct: 5 ILVADDDPHIREVICFALEKAGMKTTGVADGAAALQAIGRRAPDLVVLDIG--MPEMDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R S VP++ +S + + G DD V KP RE++ARV I RR + Sbjct: 63 EVCRRLRHISDVPVLFLSARDEEIDRILGLEMGGDDYVTKPFSPRELVARVNVILRRARP 122 Query: 122 SNNRAETGPIRVF------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + G+ L E IL+ +A + + + + Sbjct: 123 AVPEPADDRRFSHGKLALAPASHTASFDGKPLSLTGIEFSILKGFLARPAHVLDRDAVTA 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + Y + V V+SHI +R KL D +++ +G+ + Sbjct: 183 SAY-AANIHVAGRTVDSHIRNIRAKLAAVGCPDVIETVHGVGFRL 226 >gi|296392538|ref|YP_003657422.1| PhoB family transcriptional regulator [Segniliparus rotundus DSM 44985] gi|296179685|gb|ADG96591.1| two component transcriptional regulator, winged helix family [Segniliparus rotundus DSM 44985] Length = 240 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 47/225 (20%), Positives = 87/225 (38%), Gaps = 10/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + G S++ ++ + + D ++ L G Sbjct: 16 ILIVDDEPNIAYLLRECLLAQGFSVKEAHNPTDALAVVTKEPPDAMILDVML--PGMDGY 73 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-----HHREILARVAAI 115 L R +R P++ ++ SL+ L G DD V KP R + A Sbjct: 74 TLLRRVREMGTECPVLFLTARDSLEDKLTGLTIGGDDYVTKPFSLEEVVARLRVILRRAG 133 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + I + + + G + PL E +L Y M N ++K QI Sbjct: 134 KSDGARESPTLVFEDIELNEETHEVWKAGVLVPLSPTEFTLLRYFMVNARIVLSKRQILE 193 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +D + NVVES++S LR+K+ + + + R +GY + Sbjct: 194 HVW-HYDFGGDMNVVESYVSYLRRKI-DTGEKKMLQTLRGVGYVL 236 >gi|295096445|emb|CBK85535.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 241 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 42/230 (18%), Positives = 89/230 (38%), Gaps = 11/230 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + D+G ++ + D ++ L L Sbjct: 10 ILLVEDDHDIAALLRLNLEDEGYAITHEPDGGNALQRLETQPWDAVILDLML--PNVDGL 67 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILA-----RVAAI 115 E+ R IR ++ P+I IS S + ++G DD + KP +E++A Sbjct: 68 EICRRIRQMTRYLPIIIISARSSETDRITGLETGADDYLAKPFSVQELIARIKALFRRQQ 127 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 ++ + + + R + G+ L RE +L + + G+ ++ + Sbjct: 128 AMGQAQTDGIIQAHGLTIDPLARTVRLNGQHVDLTPREFELLYFFARHPGEVFSRLALLE 187 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI-DWN 223 ++G + E+ V +HI++LR K+ + + V + GY + N Sbjct: 188 QVWG-YQHEGYEHTVNTHINRLRIKIEKDAAEPEIVRTVWGKGYKFAEQN 236 >gi|290352269|dbj|BAI78845.1| putative two-component response regulator [Streptococcus pyogenes] Length = 228 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 48/224 (21%), Positives = 90/224 (40%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + +G + + D+ +E L Sbjct: 5 ILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLELML--PEMDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R ++ ++ ++ S+ + D G DD + KP E+LAR+ AI+RR + Sbjct: 63 EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122 Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + R + L +RE +L LM N + + + ++ S Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +DEAVE NVV+ +I LR K+ + + R +GY I Sbjct: 183 VW-KYDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225 >gi|289680029|ref|ZP_06500919.1| response regulator receiver:transcriptional regulatory protein, C-terminal [Pseudomonas syringae pv. syringae FF5] gi|330980778|gb|EGH78881.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 230 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 43/223 (19%), Positives = 89/223 (39%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD ++ G + + + + D+ ++ L Sbjct: 7 ILVIDDEPQIRKFLRISLVSQGYKVLEAATGAEGLTQAALNKPDLLVLDLGL--PDMDGQ 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 ++ R S VP++ +S S + D+G +D V KP +E LAR+ Sbjct: 65 QVLSEFREWSAVPVLVLSVRASEAQKVQALDAGANDYVTKPFGIQEFLARIRALLRQASG 124 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + ++ E GP+ V R + G+ L R+E +L L + G+ + + Q+ I+ Sbjct: 125 SEKPDSALEFGPLTVDLAYRRVLLDGQEVALTRKEYAVLAQLARHPGRVITQQQLLKDIW 184 Query: 179 GLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220 G + + + + LR+KL + + ++ +GY + Sbjct: 185 GPTHTE-DSHYLRIVVGHLRQKLADDPTAPRFILTEPGIGYRL 226 >gi|307150045|ref|YP_003885429.1| winged helix family two component transcriptional regulator [Cyanothece sp. PCC 7822] gi|306980273|gb|ADN12154.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 7822] Length = 238 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 41/228 (17%), Positives = 95/228 (41%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A V++ F + E + L + D+ ++ L E Sbjct: 10 IMVVDDDAAVRNLISRFFSYNNYETETAADAKTARGLFQKFQPDLVILDVNL--PDESGF 67 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 +L + IR + ++ ++ L+ F+ G DD + KP + A+V A+++R + Sbjct: 68 KLCQEIRKTGVI-VLMLTCMTDTNYVLEGFEKGADDYLTKPFDLEILKAKVGALFKRRSL 126 Query: 122 SNNRAE-------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + A+ + + + + + L E +L +L + + + ++ Sbjct: 127 TQPYADTLQNRLIFNELMIDVEKCEVTLNNNPVALTTLEYDLLYFLATHPNRVWDRAELI 186 Query: 175 SAIYGLFDE-AVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++++ +E E V+ HI ++RKK+ + G + + R GY + Sbjct: 187 TSVWSDDNEQEKAERKVDVHIGQIRKKIGDLDG-KLIKTVRGKGYMFE 233 >gi|254429139|ref|ZP_05042846.1| response regulator receiver domain protein [Alcanivorax sp. DG881] gi|196195308|gb|EDX90267.1| response regulator receiver domain protein [Alcanivorax sp. DG881] Length = 225 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 47/223 (21%), Positives = 95/223 (42%), Gaps = 8/223 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + + + + ++ + + D+ ++ L + Sbjct: 5 LIVEDEPRIAEPLMFALEREHFAVTHVTLGQQALDAVAGQAVDLVVLDVGL--PDMNGFD 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + +R HS++P++ ++ + + G DD V KP RE++AR+ AI +RL Sbjct: 63 VLKQLRQHSELPVLFLTARQDEVDRILGLELGGDDYVTKPFSPREVVARIRAILKRLGPK 122 Query: 123 NNRAETGP----IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++ +V G + L R E RIL ++ G+ ++ Q+ Sbjct: 123 SDADIDTNKTTLWQVDDSGLRVFFRHTELSLTRSEYRILTTMVQRPGQVFSRAQLLDIC- 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 DE E V++HI LR KLR G + ++R +GY +D Sbjct: 182 -DSDEDSFERSVDTHIKTLRAKLRPLNGDHLIVTRRGIGYLLD 223 >gi|169349478|ref|ZP_02866416.1| hypothetical protein CLOSPI_00196 [Clostridium spiroforme DSM 1552] gi|169293553|gb|EDS75686.1| hypothetical protein CLOSPI_00196 [Clostridium spiroforme DSM 1552] Length = 227 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 49/220 (22%), Positives = 95/220 (43%), Gaps = 6/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +I+D +++ +G + F++ L ++ + L + Sbjct: 5 IFVIEDDENIREIINLALVSNGYEVVQFDNAIDALELMKKETPSLAIFDLML--PKMSGI 62 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + + IR + P++ +S ++ DSG DD + KP E+ ARV ++ RR Sbjct: 63 DAIKKIRETNNELPILILSAKDREIDKVNGLDSGSDDYMTKPFGILELQARVRSLLRRHV 122 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 S+ V R ++ G+ L +E ++L YLM N+ + V + ++ + I+G Sbjct: 123 TSDVIKTKHL-VVDKQTRMIKMDGKKLELTNKEYQLLVYLMDNKHRVVEREELLNEIWG- 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D E ++ HI LR KL + G + + R +GY Sbjct: 181 YDFIGESRALDVHIRALRSKLNDD-GHKYIKTIRSVGYRF 219 >gi|127514186|ref|YP_001095383.1| two component heavy metal response transcriptional regulator [Shewanella loihica PV-4] gi|126639481|gb|ABO25124.1| two component heavy metal response transcriptional regulator, winged helix family [Shewanella loihica PV-4] Length = 238 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 43/223 (19%), Positives = 99/223 (44%), Gaps = 6/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + D + G ++ + S D+ ++ L Sbjct: 16 ILVIEDEIKIGDYLKKGLEEAGYTISLCRNGLDGYHCAISEHFDLIILDVML--PDMNGW 73 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118 ++ IR +S +P++ ++ SL+ ++ +SG DD + KP E+LARV Sbjct: 74 QILEKIRLNNSDIPVMFLTAKDSLEDKINGLESGADDYLVKPFAFAELLARVKTLLRRGT 133 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++ ++ +++ R + L +E +LE L+ ++G+ + ++ I S ++ Sbjct: 134 KQLQSDTLTLHGLKLDITKRRASREQTKLHLTNKEFSLLELLVRHQGEVLTRSFIASQVW 193 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + + NV++ I +LR K+ + + + R +GY +D Sbjct: 194 DM-NFDSDTNVIDVAIRRLRAKVDDPFSVKLIHTVRGMGYKLD 235 >gi|330951730|gb|EGH51990.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae Cit 7] Length = 230 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 43/223 (19%), Positives = 88/223 (39%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD ++ G + + + + D+ ++ L Sbjct: 7 ILVIDDEPQIRKFLRISLVSQGYKVLEAATGAEGLTQAALNKPDLLVLDLGL--PDMDGQ 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 ++ R S VP++ +S S + D+G +D V KP +E LAR+ Sbjct: 65 QVLSEFREWSGVPVLVLSVRASEAQKVQALDAGANDYVTKPFGIQEFLARIRALLRQASG 124 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + E GP+ V R + G+ L R+E +L L + G+ + + Q+ I+ Sbjct: 125 SEKPESALEFGPLTVDLAYRRVLLDGQEVALTRKEYAVLAQLARHPGRVITQQQLLKDIW 184 Query: 179 GLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220 G + + + + LR+KL + + ++ +GY + Sbjct: 185 GPTHTE-DSHYLRIVVGHLRQKLADDPTAPRFILTEPGIGYRL 226 >gi|289678146|ref|ZP_06499036.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. syringae FF5] gi|330895769|gb|EGH28058.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. japonica str. M301072PT] gi|330950912|gb|EGH51172.1| DNA-binding heavy metal response regulator [Pseudomonas syringae Cit 7] Length = 225 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 45/220 (20%), Positives = 85/220 (38%), Gaps = 4/220 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++I+D D + G +++ L + ++ L G Sbjct: 4 LIIEDEEKTADYLRRGLTEQGYAVDVARDGIEGLHLALENDHAIVILDVML--PGLDGFG 61 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLKV 121 + R +RA Q P+I ++ + + G DD + KP E++AR+ A R Sbjct: 62 VLRALRARKQTPVIMLTAREQVDDRIRGLREGADDYLGKPFSFLELVARLQALTRRSGGH 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + + R G L +E +L L +G ++KT I ++ + Sbjct: 122 EPVQITIADLWIDLISRKATRAGLRLDLTAKEFSLLSVLARRQGDILSKTSIAEMVWDI- 180 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + NVVE I +LR KL + + R +GY ++ Sbjct: 181 NFDSDTNVVEVAIKRLRAKLDGPHEHKLLHTIRGMGYVLE 220 >gi|226948065|ref|YP_002803156.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] gi|226842279|gb|ACO84945.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] Length = 230 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 48/226 (21%), Positives = 87/226 (38%), Gaps = 9/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + + S D+ ++ L G Sbjct: 7 ILVVEDNNDINKLLCDMLRQSEYITKSAYSGTEALIYLKEYDWDMVLLDLML--PGMDGK 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL IR +P+I IS ++ G DD + KP E+ AR+ + RR K Sbjct: 65 ELLSNIRKSKPMPVIIISAKEEKDIKIETLRMGADDYITKPFDIDEVSARIDSHLRRYKE 124 Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 +N ++ D R+ + + L RE IL+ LM K K+ +F + Sbjct: 125 FSNITPQNLLKYKEISLNKDTREVFIYNKQIMLTTREFDILQLLMGYPKKVFTKSNLFES 184 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 ++ + ++N + HIS LR KL + + + +GY +D Sbjct: 185 VWS-SEYLCDDNTINVHISNLRNKLSKAGTENEYIQTIWGIGYKLD 229 >gi|254422525|ref|ZP_05036243.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] gi|196190014|gb|EDX84978.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] Length = 245 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 46/228 (20%), Positives = 89/228 (39%), Gaps = 9/228 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++IDD + + G N + L D+ ++ L G V Sbjct: 4 ILVIDDDPAIVELVSINLEMAGYDTTQANDGIKGQALAVQLVPDLIMLDLMLPKVDGFTV 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R + +P++ ++ Q +D F++G DD + KP E+LARV A+ RR Sbjct: 64 CQRLRRDDRTADIPVLMLTALGETQNKVDGFNAGADDYLTKPFELEEMLARVRALLRRTD 123 Query: 121 VSNNRAETGPIRVF------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 A+ I + + + + L E +L L+ G+ V+ ++I Sbjct: 124 RIPQAAKHSEILSYGPLTLVPERFEAIWLDKTVKLTHLEFELLHCLLQRHGQTVSPSEIL 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 ++G +D + + H+ LR KL + + + GY ++ Sbjct: 184 KEVWG-YDPNDDIETIRVHVRHLRTKLEPDPRHPQYIKTVYGAGYCLE 230 >gi|157146841|ref|YP_001454160.1| DNA-binding transcriptional activator CusR [Citrobacter koseri ATCC BAA-895] gi|157084046|gb|ABV13724.1| hypothetical protein CKO_02615 [Citrobacter koseri ATCC BAA-895] Length = 232 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 36/224 (16%), Positives = 99/224 (44%), Gaps = 6/224 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G ++ ++ L + D+ ++ L Sbjct: 8 ILIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLLILDIML--PDVNGW 65 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118 ++ R++R A+ +P++ ++ +++ + + G DD + KP E+LARV Sbjct: 66 DIVRMLRTANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 125 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + ++ + + + R G L +E +LE+ + ++G+ + ++ I S ++ Sbjct: 126 AVMVESQFQVADLTLDLVSRKVTRNGMRITLTSKEFTLLEFFVRHQGEVLPRSLIASQVW 185 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + + + N ++ + +LR K+ N+ + + R +GY ++ Sbjct: 186 DM-NFDSDTNAIDVAVKRLRAKIDNEFEPKLIQTVRGVGYVLEV 228 >gi|324994942|gb|EGC26855.1| DNA-binding response regulator [Streptococcus sanguinis SK678] gi|325696258|gb|EGD38149.1| DNA-binding response regulator [Streptococcus sanguinis SK160] gi|327474619|gb|EGF20024.1| DNA-binding response regulator [Streptococcus sanguinis SK408] gi|327490177|gb|EGF21965.1| DNA-binding response regulator [Streptococcus sanguinis SK1058] Length = 238 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 39/220 (17%), Positives = 85/220 (38%), Gaps = 6/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D +++ + G + + + ++ L Sbjct: 14 ILLVEDDPVIRQMVKKMLEQWGFQVVAVEDFMDVLTVFVREEPHLVLMDIGLPL--FNGY 71 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 + IR S VP++ +S + + G DD + KP + LA+V Sbjct: 72 HWCQEIRKISTVPIMFLSSRDQSMDIVMAINMGADDYITKPFDNNVFLAKVQGLLRRSYE 131 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + E + + D G+V L + E +IL L + VA+ + ++ Sbjct: 132 FGNDQSLLEHQGVILNLKSTDLVFDGKVVTLTKNEFQILRVLFEHSDGIVARDDLMKELW 191 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 D +++N + ++++LRKKL + +++K+ +GY Sbjct: 192 -NSDFFIDDNTLSVNVARLRKKLEEHGLKNFIETKKGIGY 230 >gi|317489938|ref|ZP_07948430.1| response regulator receiver domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|325829806|ref|ZP_08163264.1| putative sensory transduction protein RegX3 [Eggerthella sp. HGA1] gi|316910936|gb|EFV32553.1| response regulator receiver domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|325487973|gb|EGC90410.1| putative sensory transduction protein RegX3 [Eggerthella sp. HGA1] Length = 234 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 41/231 (17%), Positives = 77/231 (33%), Gaps = 15/231 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + + + +E + + L V ++ + Sbjct: 6 LIVEDDSDIIEILSLYLCGSDYQVETAANGKLGLELLERKSPSVILVDLM--MPEMNGFD 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK-- 120 + R S P+I IS + D G D + KP E+LA + A+ RR Sbjct: 64 FIKEARLVSNAPIIIISARSQPTDKMLGLDLGADGYITKPFDPIEVLAYIRAVLRRCNAL 123 Query: 121 ---------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + G I + V E +I L ++ G+ K Sbjct: 124 SASGPSNISPDGSVVRMGAIEFDKESLIVRKNSNVVSFTASELKIFSKLFSSPGRVYTKA 183 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 Q++ I E+ + HIS +R K+ + + + R LGY + Sbjct: 184 QLYELISASSHGGGED-SIMVHISNIRSKIEDDPNNPAHIVTVRGLGYRFE 233 >gi|325681430|ref|ZP_08160956.1| response regulator receiver domain protein [Ruminococcus albus 8] gi|324106920|gb|EGC01210.1| response regulator receiver domain protein [Ruminococcus albus 8] Length = 226 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 50/221 (22%), Positives = 86/221 (38%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +I+D + + L D G L + D+ ++ L K Sbjct: 5 IAVIEDDREINNILFRLLTDSGYEAVQAFDGSEASRLLKAENFDLVLMDLMLPYK--SGE 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119 L IR SQ P+I IS ++T L+ G DD + KP E+ V Sbjct: 63 RLIAEIRETSQTPVIVISAKSMMETKLEVLRLGADDYIIKPFDIDEVLVRIEVVLRRTAG 122 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++ E G I + + + G L +E +L M + K K +++ +++ Sbjct: 123 SQHSDSLEVGGIVLNNTENSVTLDGTAVRLTAKELMLLRLFMEHPQKVYTKAELYESVWN 182 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 E+N + H+S LR KL+ G D +D+ +GY + Sbjct: 183 DT-YYYEDNTINVHVSNLRSKLKKAGGRDFIDTVWGIGYRL 222 >gi|224500673|ref|ZP_03669022.1| hypothetical protein LmonF1_13771 [Listeria monocytogenes Finland 1988] Length = 228 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 40/228 (17%), Positives = 83/228 (36%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D V + F + + + + D++ I+ L + Sbjct: 3 LLMIEDNVSVCEMIEMFFMKEEIDATFVHDGKMGYEAFFKDDYDIAIIDLML--PNMDGM 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAA 114 + R IR S VP+I ++ S + + G DD V KP ++ R + Sbjct: 61 TICRKIREVSDVPIIILTAKESESDQVLGLEMGADDYVTKPFSPLTLMARIKAVTRRKNS 120 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + T + L +E +L +LM + + ++ Q+ Sbjct: 121 ATSTENNEDILETTYFKISKRTREIFYQDELLDALTPKEFDLLYFLMKHPRQVFSREQLL 180 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 ++G + +E V+ HI +LR+K+ + + + +GY D Sbjct: 181 EQVWG-YQFYGDERTVDVHIKRLRQKIATETKP-FLHTVWGVGYKFDE 226 >gi|193222240|emb|CAL60747.2| Transcriptional regulatory protein CusR [Herminiimonas arsenicoxydans] Length = 227 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 39/223 (17%), Positives = 92/223 (41%), Gaps = 6/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D D + G ++ + + + + D+ ++ L Sbjct: 3 ILVVEDENKTADYVRQGLMEAGFMVDLARNGLDGHHMAMNEQYDLVLLDVML--PDVDGW 60 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118 + + +R Q+P++ ++ + + + G DD + KP E+LARV Sbjct: 61 RIVKSLREAGKQMPVLFLTARGGVDDRVKGLELGADDYLIKPFAFSELLARVRTLLRRGS 120 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + R E + + R G+ L +E +LE L +G+ + ++ I S ++ Sbjct: 121 APSQSERLEVADLILDLPRRKATRMGQKIVLTNKEFSLLELLARRQGEVLPRSLIASQVW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + + N ++ I +LR K+ + + + R +GY++D Sbjct: 181 DM-NFDSDSNAIDVAIRRLRAKIDDPFEPKLIHTVRGMGYTLD 222 >gi|163791203|ref|ZP_02185620.1| DNA-binding response regulator [Carnobacterium sp. AT7] gi|159873534|gb|EDP67621.1| DNA-binding response regulator [Carnobacterium sp. AT7] Length = 229 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 43/226 (19%), Positives = 93/226 (41%), Gaps = 9/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + ++G +E + + + + ++ + ++ + Sbjct: 3 ILVVDDDKEIVELLSIYIQNEGYEVEKAYNGKEALTKIKTIK-NIDLMVLDVMMPNMDGI 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + +R Q+P++ +S + + +G DD V KP + E++AR+ ++ RR Sbjct: 62 QVVKEVRKELQLPILMLSAKTTDIDKIKGLVTGADDYVAKPFNPLEVMARIKSLLRRSNY 121 Query: 122 SNNRAETGPIRVFS------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + N E + V + GE L E IL L +N + + +IF Sbjct: 122 ATNLQELNKLEVGPLLIEKESHEVRTINGEFIQLTALEFGILYLLASNPNRVFSADEIFE 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220 ++ + V V H+S LR K+ G + + +GY I Sbjct: 182 RVW-QQESLVSAKTVMVHVSHLRDKIEEATGGEKVIQTVWGVGYKI 226 >gi|22536790|ref|NP_687641.1| DNA-binding response regulator VncR [Streptococcus agalactiae 2603V/R] gi|25010662|ref|NP_735057.1| hypothetical protein gbs0597 [Streptococcus agalactiae NEM316] gi|76788680|ref|YP_329329.1| DNA-binding response regulator VncR [Streptococcus agalactiae A909] gi|76799863|ref|ZP_00781893.1| response regulator [Streptococcus agalactiae 18RS21] gi|77406749|ref|ZP_00783785.1| DNA-binding response regulator VncR [Streptococcus agalactiae H36B] gi|77408530|ref|ZP_00785267.1| DNA-binding response regulator VncR [Streptococcus agalactiae COH1] gi|77411096|ref|ZP_00787449.1| DNA-binding response regulator VncR [Streptococcus agalactiae CJB111] gi|77414291|ref|ZP_00790450.1| DNA-binding response regulator VncR [Streptococcus agalactiae 515] gi|22533635|gb|AAM99513.1|AE014219_5 DNA-binding response regulator VncR [Streptococcus agalactiae 2603V/R] gi|23095016|emb|CAD46241.1| Unknown [Streptococcus agalactiae NEM316] gi|76563737|gb|ABA46321.1| DNA-binding response regulator VncR [Streptococcus agalactiae A909] gi|76584783|gb|EAO61511.1| response regulator [Streptococcus agalactiae 18RS21] gi|77159670|gb|EAO70822.1| DNA-binding response regulator VncR [Streptococcus agalactiae 515] gi|77162819|gb|EAO73777.1| DNA-binding response regulator VncR [Streptococcus agalactiae CJB111] gi|77172887|gb|EAO76019.1| DNA-binding response regulator VncR [Streptococcus agalactiae COH1] gi|77174626|gb|EAO77459.1| DNA-binding response regulator VncR [Streptococcus agalactiae H36B] Length = 217 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 45/220 (20%), Positives = 101/220 (45%), Gaps = 7/220 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 + ++D L+++G + G ++ +S D++ + + L Sbjct: 3 ILTVEDDKLIREGISEYLSEFGYTVIQAKDGREALSKFNS---DINLVILDIQIPFINGL 59 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IR S +P++ ++ + + +D F + VD V KP + AR+ ++ ++ Sbjct: 60 EVLKEIRKKSNLPILILTAFSDEEYKIDAFTNLVDGYVEKPFSLPVLKARIDSLIKKNFG 119 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + E + V + ++ E + +E IL+ L+ N G+ + + QI ++ Sbjct: 120 HLEKFEYKNLSVNFNSYTAKINDEKIDVNAKELEILKCLLDNDGQVLTRMQIIDYVWKDS 179 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +E + VV+ +I +LRKKL+ D + + R +GY ++ Sbjct: 180 EEIPYDRVVDVYIKELRKKLQL----DCITTIRNVGYKLE 215 >gi|325275439|ref|ZP_08141370.1| two component heavy metal response transcriptional regulator [Pseudomonas sp. TJI-51] gi|324099415|gb|EGB97330.1| two component heavy metal response transcriptional regulator [Pseudomonas sp. TJI-51] Length = 224 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 41/222 (18%), Positives = 89/222 (40%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D D ++G ++ ++ L D+ ++ L Sbjct: 3 LLIIEDELRTADYLQQGLRENGYVVDCAHTGTDGLHLARQHPYDLVILDVNL--PELDGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119 + + +RA S ++ ++ + L + D G DD + KP E+ R Sbjct: 61 TVLQRLRAESATRIMMLTAHGRLADRVKGLDLGADDYLLKPFEFPELLARIRSLLRRNDQ 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++ + + + G+ L +E +L LM G+ +++TQI S ++ Sbjct: 121 QLQPSTLRVADLELDPGRHRAYRAGQRIDLTAKEFALLHLLMRQTGEVLSRTQIISLVWD 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + + NVVE I +LR K+ + + + R +GY ++ Sbjct: 181 M-NFDCDTNVVEVSIRRLRAKIDDPFDTKLIHTLRGVGYVLE 221 >gi|262404218|ref|ZP_06080773.1| putative two-component response regulator [Vibrio sp. RC586] gi|262349250|gb|EEY98388.1| putative two-component response regulator [Vibrio sp. RC586] Length = 236 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 41/226 (18%), Positives = 78/226 (34%), Gaps = 11/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ G G + + L + D+ ++ G+ Sbjct: 7 ILVVDDNQELREALKDYLGKAGFEVICAENGAVMWKLLETHNPDLIILDIM--MPGDDGF 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-------ILARVAA 114 L + +R HS VP+I ++ + + G DD + K RE IL R Sbjct: 65 TLCQKLRKHSSVPIIMLTAVTEETDRVTGLELGADDYITKSFSPRELLARIKAILRRSQL 124 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + V L + +L + + K + + I Sbjct: 125 SDSLSVARKVTFAGWQLDTITRQLKHLETHAVKQLSGADLSLLGLFINHAEKLLTRDDIA 184 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I+G D E ++ IS+LR L +K + + R GY + Sbjct: 185 REIWGR-DADPFERGIDVQISRLRTHLEDK-DRTLILTVRNKGYML 228 >gi|291087261|ref|ZP_06345880.2| DNA-binding response regulator ResD [Clostridium sp. M62/1] gi|313115944|ref|ZP_07801371.1| response regulator receiver domain protein [Faecalibacterium cf. prausnitzii KLE1255] gi|291075611|gb|EFE12975.1| DNA-binding response regulator ResD [Clostridium sp. M62/1] gi|310621708|gb|EFQ05236.1| response regulator receiver domain protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 236 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 43/220 (19%), Positives = 95/220 (43%), Gaps = 6/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + + +G ++ + + D+ + Sbjct: 17 ILIVEDDKELSQLFQKVLEKNGYQVKSASDGAQALEVLVKEYIDLIISDIM--MPVMDGY 74 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-ARVAAIYRRL 119 EL +R A Q+P++ I+ S F SG DD + KP++ E++ A + R Sbjct: 75 ELVSELRSAGYQIPVLMITAKGSFDDMRQGFLSGSDDYMVKPVNVNEMVLRVGALLRRAQ 134 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++ ++ G D E LP++E +L L A+ G+ K Q+ ++G Sbjct: 135 ILNEHKIVIGSTEFDYDAMTVTTDKESLVLPKKEFLLLYKLAASPGRIFTKQQLMDEVWG 194 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 ++ + + +E HI ++R++L++ F+ + + R +GY Sbjct: 195 -YETEADPHTIEVHIGRIRERLKDNPDFE-IVTMRGIGYK 232 >gi|240144354|ref|ZP_04742955.1| DNA-binding response regulator ResD [Roseburia intestinalis L1-82] gi|257203603|gb|EEV01888.1| DNA-binding response regulator ResD [Roseburia intestinalis L1-82] Length = 229 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 48/226 (21%), Positives = 85/226 (37%), Gaps = 11/226 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++I+D + D G +E N S D+ ++ L G E Sbjct: 5 LIIEDEVAIADLEKDYLELSGFEVETENDGVVGLKRALSEDFDMYILDLML--PGIDGFE 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121 + + IR P++ +S + G DD + KP E++ARV A R + Sbjct: 63 ICKQIREEKNTPILMVSAKKDDIDKIRGLGLGADDYITKPFSPSELVARVKAHLARYERL 122 Query: 122 ------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 N+ E IR+ R V GE +E +L +L + K ++F Sbjct: 123 IGSNAVENDVIEIRGIRIDKTARRVWVNGEEKQFTTKEFDLLTFLAEHPNHVFTKEELFR 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 I+ + + + V HI K+R+K+ +++ +GY Sbjct: 183 EIWDM-ESIGDIATVTVHIKKIREKIEMNTNKPQYIETIWGVGYRF 227 >gi|225388657|ref|ZP_03758381.1| hypothetical protein CLOSTASPAR_02393 [Clostridium asparagiforme DSM 15981] gi|225045255|gb|EEG55501.1| hypothetical protein CLOSTASPAR_02393 [Clostridium asparagiforme DSM 15981] Length = 235 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 40/230 (17%), Positives = 82/230 (35%), Gaps = 13/230 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D ++ + + F S E S D++ ++ L L Sbjct: 5 ILVVDDEKEIADLIEVYLQNENMDVYKFYSGEEALVCIGSTDFDLAILDIML--PDISGL 62 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH---------REILAR 111 + + IR P+I +S + G DD + KP + + Sbjct: 63 SICQSIRSKEYTYPVIMLSAKDGETDKITGLTLGADDYITKPFLPLELVARVKAQLRRYK 122 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + + ++ + + + + + GE L E IL L+ R V+ Sbjct: 123 KYNVGAAVPAADEVFQYAGLTMNIKTYECRLNGEALSLTPTEFSILRILLERRCSVVSAE 182 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 ++F I+ N + HI LR+K+++ + + +GY I Sbjct: 183 ELFHEIWQEEYYNKSNNTITVHIRHLREKMKDTGENPRYIKTVWGVGYKI 232 >gi|224541337|ref|ZP_03681876.1| hypothetical protein CATMIT_00497 [Catenibacterium mitsuokai DSM 15897] gi|224525774|gb|EEF94879.1| hypothetical protein CATMIT_00497 [Catenibacterium mitsuokai DSM 15897] Length = 234 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 41/232 (17%), Positives = 91/232 (39%), Gaps = 15/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D +++ + + + ++ ++ L Sbjct: 5 LLLVEDELGIRETVKIFLKSQNYEVIEAENGKEGLEALKHNDIHLAIVDIM--MPVMDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + +R S +P+I ++ + + G DD + KP E++ARV + RR + Sbjct: 63 TMTMKLREVSDIPVIFLTAKTEDIDKITGLNLGADDYITKPFEPMELIARVNSNLRRYEQ 122 Query: 122 SNNRAETGPIRV----------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 N + ++ V G L ++E +ILE LM+ GK + Sbjct: 123 ILNLKGNIQKPNNQLIVGGLVLDQETKEVFVNGRSVRLTKKEFQILELLMSYPGKVYSAE 182 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 +I+ +I+ + A+ + H+ +LR+K+ N + + + +GY I+ Sbjct: 183 EIYESIW--EETAINTETIMVHVRRLREKIEANPKHPEYLKAVWGVGYKIEK 232 >gi|78183896|ref|YP_376330.1| two component transcriptional regulator [Synechococcus sp. CC9902] gi|78168190|gb|ABB25287.1| two component transcriptional regulator, winged helix family [Synechococcus sp. CC9902] Length = 259 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 39/229 (17%), Positives = 82/229 (35%), Gaps = 10/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +LI+D ++D G ++ + + L D+ ++ L G + Sbjct: 5 ILLIEDDQDMRDLVSGHLEHSGFDVQRADDGIKGQALALQYTPDLILLDLMLPKVDGLTL 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVA 113 + R + +P++ ++ + + F+SG DD + KP E+ R Sbjct: 65 CQRLRRDERTAGIPILMLTALGGTKDKVSGFNSGADDYLTKPFDLEELQVRIKALLRRSD 124 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 N GP+ + + + L E +L L+ G+ VA + I Sbjct: 125 RAPLGASNQNEILSYGPLTLVPERFEAIWFDSPVRLTHLEFELLHCLLQRHGQTVAPSLI 184 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 ++G ++ + + H+ LR KL + + GY ++ Sbjct: 185 LKEVWG-YEPDDDIETIRVHVRHLRTKLEPDPRKPRFIKTVYGAGYCLE 232 >gi|120596940|ref|YP_961514.1| osmolarity response regulator [Shewanella sp. W3-18-1] gi|146294927|ref|YP_001185351.1| osmolarity response regulator [Shewanella putrefaciens CN-32] gi|120557033|gb|ABM22960.1| two component transcriptional regulator, winged helix family [Shewanella sp. W3-18-1] gi|145566617|gb|ABP77552.1| two component transcriptional regulator, winged helix family [Shewanella putrefaciens CN-32] gi|319424531|gb|ADV52605.1| two component transcriptional regulator for porins, OmpR [Shewanella putrefaciens 200] Length = 241 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 42/229 (18%), Positives = 91/229 (39%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ + G + + E + L + ++ L GE L Sbjct: 8 ILVVDDDMRLRALLERYLMEQGYQVRSAANAEQMDRLLERENFHLLVLDLML--PGEDGL 65 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R +R S +P++ ++ + + G DD + KP + RE+LAR+ A+ RR Sbjct: 66 SICRRLRQQGSLIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQT 125 Query: 121 --------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 G + R+ E L E +L+ L+ + + +++ + Sbjct: 126 LEVPGAPAQQEAEISFGEFSLDLATREMYHGDEAIALTSGEFAVLKVLVTHPREPLSRDK 185 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + + G D + E ++ +S+LR+ + + + + LGY Sbjct: 186 LMNLARGR-DYSALERSIDVQVSRLRRLIEKDPANPRYIQTVWGLGYVF 233 >gi|330957398|gb|EGH57658.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. maculicola str. ES4326] Length = 225 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 46/220 (20%), Positives = 85/220 (38%), Gaps = 4/220 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++I+D D + G +++ L V ++ L G Sbjct: 4 LIIEDEEKTADYLRRGLTEQGYTVDVARDGIEGLHLALENEHAVIILDVML--PGLDGFG 61 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLKV 121 + R +RA Q P+I ++ + + G DD + KP E++AR+ A R Sbjct: 62 VLRALRARKQTPVIMLTAREQVDDRIRGLREGADDYLGKPFSFLELVARLQALTRRSGGH 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + + R G L +E +L L +G ++KT I ++ + Sbjct: 122 EPVQITIADLWIDLISRKATRGGARLDLTAKEFSLLSVLARRQGDILSKTSIAEMVWDI- 180 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + NVVE I +LR KL + + R +GY ++ Sbjct: 181 NFDSDANVVEVAIKRLRAKLDGPHEHKLLHTIRGMGYVLE 220 >gi|322806654|emb|CBZ04223.1| DNA-binding response regulator [Clostridium botulinum H04402 065] Length = 226 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 44/223 (19%), Positives = 91/223 (40%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G + N+ + D+ ++ L L Sbjct: 4 ILIVEDEEKLSRFIELELKHEGYEIVKANNGRTGLEIAEKGEADLVLLDIML--PEINGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R S +P+I ++ ++ + D+G DD + KP E+LAR+ +++ V Sbjct: 62 EVLRRLRRTSDIPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTAFKKRIV 121 Query: 122 SNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + E L RE +L+ LM N+ + ++ + + Sbjct: 122 TVRKDEDIIRCGLLSLDKMRHKVMYDSTEIELTNREFNLLQILMENKNIVLTRSILMEKV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G +D E NV++ +I LR K+ + + + R +GY I Sbjct: 182 CG-YDYLGETNVIDVYIRFLRTKIDDAFKVKIITTVRGVGYVI 223 >gi|294341402|emb|CAZ89819.1| Transcriptional regulatory protein qseB [Thiomonas sp. 3As] Length = 239 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 56/225 (24%), Positives = 105/225 (46%), Gaps = 11/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ +D ++ DG + G +++ + S+ D+ ++ L Sbjct: 3 ILIAEDDRVLADGLLRSLRALGYAVDQVADGNSADAALQSSEFDLLILDLGL--PRLSGF 60 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119 E+ R +RA VP++ ++ S++ + D G DD + KP +E+ ARV A R + Sbjct: 61 EVLRKLRARGATVPVLILTAADSVEDKVRGLDLGADDYMAKPFALQELEARVRALSRRGM 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA--I 177 ++ + GP+ GR + G V L RE +LE L+ G+ V+K Q+ + Sbjct: 121 GGASAVIQHGPLHYDITGRVVTLDGHVVELSARELTLLEVLLQRAGRLVSKDQLVEHLCV 180 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +G E V N +E ++ +LRKK+ +G + + R LGY ++ Sbjct: 181 WG---EEVSTNAIEVYVHRLRKKIE--VGPVRIATVRGLGYCLEK 220 >gi|257871018|ref|ZP_05650671.1| two-component system response regulator [Enterococcus gallinarum EG2] gi|257805182|gb|EEV34004.1| two-component system response regulator [Enterococcus gallinarum EG2] Length = 235 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 46/228 (20%), Positives = 88/228 (38%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR--EDVSAIEAFLIGKGEK 59 ++++D + +G + L + D+ ++ L Sbjct: 5 ILIVEDEESLASFIQTELTFEGYDTVWAKDGQEALTLFNQQTDLFDLILLDWMLPI--YD 62 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 + + R IR S +P++ ++ + D G+DD + KP E+ AR+ I RRL Sbjct: 63 GITVARRIRKESDIPILMMTARNQTADVVTGLDVGLDDYLTKPFEIEELFARIRVIERRL 122 Query: 120 KVSNNRAETGPI-------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + + + +V GE L +E IL LM + + Sbjct: 123 QREAQQQKNQQNQLVVGELMMDIAKHLVQVAGETIELTPKEFGILYELMKEPEVVKTRDE 182 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + I+G ++ + NVV+ +I LR KL + + R LGY + Sbjct: 183 LLNEIWG-YEYDGQTNVVDVYIRTLRNKLDVCGKGKMIATVRGLGYVL 229 >gi|255017072|ref|ZP_05289198.1| hypothetical protein LmonF_03388 [Listeria monocytogenes FSL F2-515] Length = 220 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 41/216 (18%), Positives = 84/216 (38%), Gaps = 12/216 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D +G + + L + D+ ++ L G + Sbjct: 6 ILVVDDEKPIADIVKFNLNKEGFDVYCAYDGDEALELVEEVQPDLILLDIML--PGRDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112 E+ R +R +P+I ++ S + + G DD V KP +RE Sbjct: 64 EVCREVRKKYDMPIIMVTAKDSEIDKVIGLELGADDYVTKPFSNRELIARVKANLRRHSQ 123 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + N+ E G + + D +GE L RE +L YL + G+ + + Sbjct: 124 VSSSTAEEEENSELEIGSLIIHPDAYVASKRGETIELTHREFELLHYLAKHMGQVMTREH 183 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD 208 + ++G +D + V+ + +LR+K+ + Sbjct: 184 LLQTVWG-YDYFGDVRTVDVTVRRLREKIEDNPSHP 218 >gi|13473197|ref|NP_104764.1| phosphate regulatory protein, PhoB [Mesorhizobium loti MAFF303099] gi|260461553|ref|ZP_05809800.1| two component transcriptional regulator PhoB, winged helix family [Mesorhizobium opportunistum WSM2075] gi|319781154|ref|YP_004140630.1| phosphate regulon transcriptional regulatory protein PhoB [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|14023945|dbj|BAB50550.1| phosphate regulatory protein; PhoB [Mesorhizobium loti MAFF303099] gi|259032623|gb|EEW33887.1| two component transcriptional regulator PhoB, winged helix family [Mesorhizobium opportunistum WSM2075] gi|317167042|gb|ADV10580.1| phosphate regulon transcriptional regulatory protein PhoB [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 229 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 43/222 (19%), Positives = 95/222 (42%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D + +G +E + E D+ ++ + G ++ Sbjct: 6 IMVVEDEEPLGVLLRYNLESEGYQVEVVTRGDEAEIRLQENVPDLLVLDWMVPAVSGIEL 65 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118 R+ ++P+I ++ + +G DD + KP E +ARV A + Sbjct: 66 CRRLRMRPETERLPIIMLTARGEESDRVRGLSTGADDYLVKPFSTPEFMARVKALLRRAK 125 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 +V ++ + G I + + + L E R+LE++M + G+ +++Q+ ++ Sbjct: 126 PEVLSSVLKVGDIVLDRESHRVYRKKSEIRLGPTEFRLLEFMMRHPGRVFSRSQLLDNVW 185 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G ++E V+ H+ +LRK + N D + + R GY+I Sbjct: 186 GETIY-IDERTVDVHVGRLRKAVNNGRMPDVIRTIRGAGYAI 226 >gi|311696852|gb|ADP99725.1| two-component transcriptional regulator, winged helix family [marine bacterium HP15] Length = 241 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 39/228 (17%), Positives = 91/228 (39%), Gaps = 13/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++D + G+ + + + + D+ ++ G+ L Sbjct: 7 ILVVDDHRDIRDLVGRYLQEHGLRVLLADGGDAMKRQLRQHSVDLVVLDIM--MPGDDGL 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R +R H+++P+I ++ + + G DD + KP + RE+LAR+ A+ RR Sbjct: 65 TLCRYLREHTELPVILLTAMSEETDRIVGLEMGADDYLTKPFNPRELLARIKAVLRRTTA 124 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF---------PLPRRERRILEYLMANRGKRVAKTQ 172 + + + L E ++L + + G+ +++ Q Sbjct: 125 LPPQRSPMAGQSLTFEGWTLDVDRHQLIDPEGVEVSLSTAEYKLLLAFLEHAGRVLSRDQ 184 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYS 219 + G + + +++H+S+LR+K+ + + GY Sbjct: 185 LMDLTLGR-EADAFDRSIDNHVSRLRRKIDPDARSPRLIKTIWGGGYQ 231 >gi|304438293|ref|ZP_07398234.1| response regulator [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304368659|gb|EFM22343.1| response regulator [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 228 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 55/221 (24%), Positives = 102/221 (46%), Gaps = 7/221 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + +G + E + D+ ++ L G +E Sbjct: 8 LIVEDETRIARFLQMELEHEGFTAEIEGNGTRAYERIIQENFDIILLDVML--PGMDGIE 65 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +R S VP+I ++ +++ ++ D G DD + KP E++AR+ RR +S Sbjct: 66 ICRRVRTVSNVPIIMLTARDAVEDRVEGLDIGADDYITKPFAVPELIARIRNALRRRDIS 125 Query: 123 NNRAETG----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + A + +F + +V GE L +RE +LEYL+ N+ + + QI ++ Sbjct: 126 TDDASDRLTVKNLIMFLSRYEVQVDGETVALTKREYDLLEYLLRNKRTVLTRDQILQEVW 185 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 G FD E NVV+ +I LR KL ++ + + R +GY Sbjct: 186 G-FDYTGETNVVDVYIRYLRAKLDDRFHKKYIYTVRGVGYV 225 >gi|229823027|ref|ZP_04449096.1| hypothetical protein GCWU000282_00322 [Catonella morbi ATCC 51271] gi|229787466|gb|EEP23580.1| hypothetical protein GCWU000282_00322 [Catonella morbi ATCC 51271] Length = 235 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 48/221 (21%), Positives = 98/221 (44%), Gaps = 6/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + L S++ + + D+ ++ Sbjct: 9 LLLVEDERDLNASLTKLLKKQQYSVDSAFDGQEALDFLAVGSYDLIILDIM--MPHMDGF 66 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E IR + VP++ ++ ++ + D G DD + KP E+LAR+ + RR Sbjct: 67 EFLERIRLQENPVPVLLLTARDAVTDKIRGLDLGADDYMVKPFEFEELLARLRVLLRRPL 126 Query: 121 VS--NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 +++ E GPIR+ + G+ L +E +LEYL+ N+ + +++ QI ++ Sbjct: 127 RHILSDQVEIGPIRLILSQKRVLKDGQAVNLTAKEYEVLEYLVRNQNQVLSREQIRHHVW 186 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 +++ E N ++ I +R+KL ++ + +KR LGY Sbjct: 187 D-YEQEAESNTIDVLIKNIRRKLDSEGQPSLIQTKRGLGYV 226 >gi|162146556|ref|YP_001601015.1| two-component response regulator [Gluconacetobacter diazotrophicus PAl 5] gi|209543446|ref|YP_002275675.1| winged helix family two component transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|161785131|emb|CAP54676.1| putative two-component response regulator [Gluconacetobacter diazotrophicus PAl 5] gi|209531123|gb|ACI51060.1| two component transcriptional regulator, winged helix family [Gluconacetobacter diazotrophicus PAl 5] Length = 239 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 47/229 (20%), Positives = 86/229 (37%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++D + + + + ++ L GE L Sbjct: 7 ILIVDDDREIRDLLARFLERNQFRVTTARDGRETRKAWLAGHYQIVVLDLML--PGESGL 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL R +R + VP+I ++ + + G DD V KP + RE+LAR+ A+ RR Sbjct: 65 ELARWLRGQANVPIIMLTAMGEETDRIIGLELGADDYVPKPFNPRELLARIRAVLRRSSE 124 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF---------PLPRRERRILEYLMANRGKRVAKTQ 172 + G R Q PL E +L L+ + + + Sbjct: 125 APETRVVGEPRSLHFSGWTLEQARRRLLNPEGTEVPLTGGEYDLLMALLDRANRVLTRDM 184 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 +F + G + ++ IS+LR+KL + + + R GY + Sbjct: 185 LFDLLRGRQAGPFD-RAIDVAISRLRRKLEDNGRNAQLIKTVRGGGYVL 232 >gi|332304516|ref|YP_004432367.1| two component transcriptional regulator, winged helix family [Glaciecola agarilytica 4H-3-7+YE-5] gi|332171845|gb|AEE21099.1| two component transcriptional regulator, winged helix family [Glaciecola agarilytica 4H-3-7+YE-5] Length = 239 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 40/232 (17%), Positives = 87/232 (37%), Gaps = 15/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + + GV ++ + V ++ L L Sbjct: 5 ILIVEDDLDIANLMRVNLLELGVEIDHQTDGQLALTQALENDYSVILLDVML--PNMNGL 62 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL----------A 110 ++ R IR +I ++ S + + G DD + KP RE+ Sbjct: 63 DICRQIRDKRPMQIIIMLTSKNSETDRVLGLELGADDYMTKPFSVRELQARVRSQLRKVH 122 Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + + + G +R+ + + L E +L +L + G+ ++ Sbjct: 123 VLQQSHVPSPQESEALCIGTLRIEQKNHQVFLAEQELVLTATEFELLHHLANHPGQVFSR 182 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 +Q+ +++G + + E+ V SHI++LR KL N V + +GY + Sbjct: 183 SQLLESVWG-YHHSGYEHTVNSHINRLRAKLEKNATSPKIVQTVWGVGYKFN 233 >gi|313498314|gb|ADR59680.1| Winged helix family two component transcriptional regulator [Pseudomonas putida BIRD-1] Length = 238 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 45/230 (19%), Positives = 92/230 (40%), Gaps = 15/230 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD L++D A +G + ++ E E L +S D+ ++ L G+ L Sbjct: 6 LIVDDDPLIRDLLQAYLSREGYDVHCADTAERAEALLASQDVDLVLLDIRL--PGKDGLT 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R +R S+V +I ++ + + G DD V KP++ RE+++R + RR++ + Sbjct: 64 LTRELRVRSEVGIILVTGRNDDIDRIVGLECGADDYVIKPLNPRELVSRAKNLIRRVRHA 123 Query: 123 NNRAETGPIRVFSDGRDPE-----------VQGEVFPLPRRERRILEYLMANRGKRVAKT 171 G L E ++L + N G +++ Sbjct: 124 REAHPAPACPQSLKQFADWALDTDRRRLIDACGGQTLLTHGEFQLLSVFLRNSGHTLSRD 183 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220 Q+ I + + ++ + +LR+KL + + + GY Sbjct: 184 QLMDQIRNR-EWVPNDRSIDVLVGRLRRKLHDDPAEPQLIITIHGTGYLF 232 >gi|154504737|ref|ZP_02041475.1| hypothetical protein RUMGNA_02244 [Ruminococcus gnavus ATCC 29149] gi|153794911|gb|EDN77331.1| hypothetical protein RUMGNA_02244 [Ruminococcus gnavus ATCC 29149] Length = 224 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 43/221 (19%), Positives = 89/221 (40%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ +D + + S++ + A D ++ L Sbjct: 3 ILVAEDEKDLNRLLSTRLKAEHYSVDSCFDGQEALDYLEGAPYDAVVLDIM--MPVLDGL 60 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + + +R SQ P++ ++ S++ + D+G +D + KP E+LAR+ + R+ K Sbjct: 61 SVLKTMRQKGSQTPVLLLTAKDSVEDRVRGLDAGANDYLVKPFAFEELLARIRVLLRKPK 120 Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + V D G L +E +L YL+ N G +++ ++ ++ Sbjct: 121 EAPQTVCKLDDLEVHLDTHQVLRAGHEIKLSGKEFALLRYLIQNTGIVLSRDRLEQHLW- 179 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D A NV++ +I LRKK+ + + R GY + Sbjct: 180 NYDYAGGSNVIDVYIRYLRKKIDEGSQTKLIHTVRGAGYVM 220 >gi|78213886|ref|YP_382665.1| two component transcriptional regulator [Synechococcus sp. CC9605] gi|78198345|gb|ABB36110.1| two component transcriptional regulator, winged helix family [Synechococcus sp. CC9605] Length = 262 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 39/229 (17%), Positives = 84/229 (36%), Gaps = 10/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +LI+D ++D G ++ + + L D+ ++ L G + Sbjct: 5 ILLIEDDQDMRDLVSGHLEHSGFDVQRADDGIKGQALALQYTPDLILLDLMLPKVDGLTL 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVA 113 + R + +P++ ++ + + F+SG DD + KP E+ R Sbjct: 65 CQRLRRDDRTAGIPILMLTALGGTKDKVSGFNSGADDYLTKPFDLEELQARVKALLRRSD 124 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 N GP+ + + + + L E +L L+ G+ VA + I Sbjct: 125 RAPVGSTNHNEILSYGPLTLVPERFEAIWFDQPVRLTHLEFELLHCLLQRHGQTVAPSLI 184 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 ++G ++ + + H+ LR KL + + + GY ++ Sbjct: 185 LKEVWG-YEPDDDIETIRVHVRHLRTKLEPDPRKPRFIKTVYGAGYCLE 232 >gi|298290182|ref|YP_003692121.1| two component transcriptional regulator [Starkeya novella DSM 506] gi|296926693|gb|ADH87502.1| two component transcriptional regulator, winged helix family [Starkeya novella DSM 506] Length = 232 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 43/225 (19%), Positives = 80/225 (35%), Gaps = 11/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++ G S+ + ++ D+ ++ + GE + Sbjct: 6 ILVVDDDAGIRSLVSESLSLHGFSVLEARDTRAMDRALAANAIDLIILDV--LMPGEDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 R + + P++ +S + + G D + KP RE+LA V A RR Sbjct: 64 SACRRLAGRAGPPVVMLSAMDQPTDRVVGLELGADYYLGKPCDPRELLAVVRATLRRRGA 123 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF------PLPRRERRILEYLMANRGKRVAKTQIFS 175 + R D L E +L + + + + Q+ Sbjct: 124 DEDTDSRARYRFLGWTVDFAAYELRDGAGALVHLTDGEFAVLRSFVQRPRRVLTRDQLLE 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 A G D + V+ +S+LR+KLR D + + R GY Sbjct: 184 AARG-PDSEALDRAVDVQVSRLRRKLRADS--DLIRTIRNEGYMF 225 >gi|260889876|ref|ZP_05901139.1| DNA-binding response regulator TrcR [Leptotrichia hofstadii F0254] gi|260860482|gb|EEX74982.1| DNA-binding response regulator TrcR [Leptotrichia hofstadii F0254] Length = 227 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 45/225 (20%), Positives = 89/225 (39%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + D + + ++ + + S D + L G Sbjct: 3 ILVIEDEKNLNDIIVKKLVLEKYCVDSCLNGKDALDYIFSVEYDAIVSDIML--PGIDGF 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAI 115 E+ R IR P++ ++ ++ + D G DD + KP E++AR Sbjct: 61 EILRRIREKGIKTPVLLLTARDGIEDRVKGLDYGADDYLVKPFAFDELMARVRVLLRRNP 120 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 ++N + V + D L RE ILEY++ N+ + +++ QI Sbjct: 121 STNNSNASNIFSIANLTVNCNSHDVFRDKTPIKLSTREFTILEYMIRNKERVLSREQIEQ 180 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I+ +D NV++ +I LR+K+ + + R +GY + Sbjct: 181 HIWN-YDYEGGTNVIDVYIRYLRRKIDKDFEPKLIHTIRGVGYVL 224 >gi|239995632|ref|ZP_04716156.1| osmolarity response regulator [Alteromonas macleodii ATCC 27126] Length = 240 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 38/229 (16%), Positives = 86/229 (37%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ + G + + E + L + ++ L GE L Sbjct: 8 ILVVDDDMRLRSLLERYLLEQGYQVRSAANAEQMDRLLERENFHLMVLDLML--PGEDGL 65 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112 + R +R + +P+I ++ + + G DD + KP + RE + R Sbjct: 66 SICRRLRQQENDMPIIMLTAKGDEVDRIIGLEMGADDYLPKPFNPRELLARAKAVLRRRS 125 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + E G ++ R+ L E +L+ L+ + + +++ + Sbjct: 126 SEAPGAPSKDVQIVEFGNYKLNLATREMTAGDTPLTLTSGEFAVLKSLVTHPREPLSRDK 185 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220 + + G D + E ++ +S+LR+ L + + + LGY Sbjct: 186 LMNLARGR-DYSALERSIDVQVSRLRRMLEEDPANPRYIQTVWGLGYVF 233 >gi|328469451|gb|EGF40397.1| putative two-component response regulator [Vibrio parahaemolyticus 10329] Length = 235 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 45/226 (19%), Positives = 89/226 (39%), Gaps = 11/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ G G + + L + D+ ++ GE Sbjct: 6 ILVVDDNLDLREALSDYLGRAGFEVLCAENGGAMWQLLNDHHPDLIILDIM--MPGEDGF 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L + +R +S +P+I ++ + + G DD + K RE+LAR+ I RR + Sbjct: 64 TLCQKLRKNSDIPIIMLTAVTEEADRVAGLEMGADDYITKSFSPRELLARIKTILRRSQS 123 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERR-------ILEYLMANRGKRVAKTQIF 174 + N T +R D + R ++ +L + + +++ I Sbjct: 124 TANSKLTRKVRFDDWLLDTVTRQLTHVASREVKQLSGADLSLLGLFVNHAQSILSRDDIA 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I+G D E ++ IS+LR L +K + + R GY + Sbjct: 184 REIWGR-DADPFERGIDVQISRLRHHLEDK-DRSLILTVRNKGYML 227 >gi|269137752|ref|YP_003294452.1| DNA-binding response regulator in two-component regulatory system with BasS [Edwardsiella tarda EIB202] gi|267983412|gb|ACY83241.1| DNA-binding response regulator in two-component regulatory system with BasS [Edwardsiella tarda EIB202] gi|304557809|gb|ADM40473.1| Transcriptional regulatory protein basR/pmrA [Edwardsiella tarda FL6-60] Length = 220 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 49/223 (21%), Positives = 95/223 (42%), Gaps = 9/223 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D L++ G + + + + L S + ++ L G Sbjct: 3 ILIVEDDTLIQQGLAQAMARENYACDCAGNAASASALLQSGHYSLIILDLGL--PGMDGA 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 R R P++ ++ ++ + D+G DD + KP E+LARV A+ RR++ Sbjct: 61 SALRQWRREGIDAPVLILTARDTVSDRVGGLDAGADDYLVKPFALAELLARVRALIRRMQ 120 Query: 121 VSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 N A + I + + G + +E IL LM G+ +++ + +Y Sbjct: 121 GLCNNALQVDDIHLDLSSQQVSCGGLPLEITPKEFAILTRLMMRAGQTISREVLQQDLYS 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 DE + N +E HI LR+KL G + + + R +GY ++ Sbjct: 181 WQDE-LSSNSLEVHIHNLRRKL----GKNRIKTLRGVGYRLEK 218 >gi|296137109|ref|YP_003644351.1| two component transcriptional regulator, winged helix family [Thiomonas intermedia K12] gi|295797231|gb|ADG32021.1| two component transcriptional regulator, winged helix family [Thiomonas intermedia K12] Length = 239 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 56/225 (24%), Positives = 105/225 (46%), Gaps = 11/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ +D ++ DG + G +++ + S+ D+ ++ L Sbjct: 3 ILIAEDDRVLADGLLRSLRALGYAVDQVADGNSADAALQSSEFDLLILDLGL--PRLSGF 60 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119 E+ R +RA VP++ ++ S++ + D G DD + KP +E+ ARV A R + Sbjct: 61 EVLRKLRARGATVPVLILTAADSVEDKVRGLDLGADDYMAKPFALQELEARVRALSRRGM 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA--I 177 ++ + GP+ GR + G V L RE +LE L+ G+ V+K Q+ + Sbjct: 121 GGASAVIQHGPLHYDITGRVVTLDGHVVELSARELTLLEVLLQRAGRLVSKDQLVEHLCV 180 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +G E V N +E ++ +LRKK+ +G + + R LGY ++ Sbjct: 181 WG---EEVSTNAIEVYVHRLRKKIE--VGPVRIATVRGLGYCLEK 220 >gi|330980166|gb|EGH78348.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 225 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 55/223 (24%), Positives = 106/223 (47%), Gaps = 5/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D AL++ + G +E + E + + D++ I+ L G L Sbjct: 3 LLVVEDEALLRHHLRTRLTEAGHVVEAVANAEEALYQVAQFNHDLAVIDLGL--PGIGGL 60 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119 +L R +RA P++ ++ + Q ++ +G DD V KP E+ AR+ A + R Sbjct: 61 DLIRQLRALGKAFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + GP+ + + + + + L E RILEYLM + + V K ++ +Y Sbjct: 121 GFIQSTITAGPLLLDLNRKHAALAEQPLALTAYEYRILEYLMLHHQQVVPKERLMEQLY- 179 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 D+ + NV+E + +LR+KL + F P+++ R +GY + Sbjct: 180 PDDDERDPNVIEVLVGRLRRKLDGSVAFKPIETVRGMGYLFNE 222 >gi|291535584|emb|CBL08696.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Roseburia intestinalis M50/1] gi|291540826|emb|CBL13937.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Roseburia intestinalis XB6B4] Length = 229 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 48/226 (21%), Positives = 85/226 (37%), Gaps = 11/226 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++I+D + D G +E N S D+ ++ L G E Sbjct: 5 LIIEDEVAIADLEKDYLELSGFEVETENDGVVGLKRALSEDFDMYILDLML--PGIDGFE 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121 + + IR P++ +S + G DD + KP E++ARV A R + Sbjct: 63 ICKQIREEKNTPILMVSAKKDDIDKIRGLGLGADDYITKPFSPSELVARVKAHLARYERL 122 Query: 122 ------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 N+ E IR+ R V GE +E +L +L + K ++F Sbjct: 123 IGSNTVENDVIEIRGIRIDKTARRVWVNGEEKQFTTKEFDLLTFLAEHPNHVFTKEELFR 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 I+ + + + V HI K+R+K+ +++ +GY Sbjct: 183 EIWDM-ESIGDIATVTVHIKKIREKIEMNTNKPQYIETIWGVGYRF 227 >gi|156740840|ref|YP_001430969.1| two component transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156232168|gb|ABU56951.1| two component transcriptional regulator, winged helix family [Roseiflexus castenholzii DSM 13941] Length = 226 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 54/226 (23%), Positives = 86/226 (38%), Gaps = 9/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD L + G + D+ ++ Sbjct: 3 ILVADDDLPNVKLTAFLLEEAGYKVIKAYDGPSILQSVEQYNPDLILLDVM--MPKTNGF 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R IR S VP+I +S LQ + G DD + KP E+LARV A+ RR Sbjct: 61 DVCRQIRRTSDVPIIFLSARSQLQDRVTGLQIGGDDYLVKPFEPSELLARVEAVLRRRNS 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQG-----EVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 E + + L E R+L YLM N G+ + +QI + Sbjct: 121 DMLNPSARLSHGDITLDPVEHKVLFADGRIVELTPLEFRLLYYLMKNSGRVLNTSQILNK 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 ++G +D E N+V +I +LR K+ + V + R LGY + Sbjct: 181 VWG-YDCEGESNLVAVYIRRLRTKIERDPEHPRHVLTVRNLGYKFE 225 >gi|89054505|ref|YP_509956.1| two component transcriptional regulator [Jannaschia sp. CCS1] gi|88864054|gb|ABD54931.1| two component transcriptional regulator, winged helix family [Jannaschia sp. CCS1] Length = 239 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 48/224 (21%), Positives = 99/224 (44%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + + + G +G + ++ E LQ + ++ L G L Sbjct: 5 ILLVEDDTRLAEMVASYLGGNGFDVSRVDTGEKALGLQGRQSFEAMILDLNL--PGIDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R ++A S +P+I ++ + + G DD + KP RE+LAR+ A+ RR + Sbjct: 63 EVCRHVKAQSALPIIMLTAKGDPMDRIIGLEIGADDYLPKPFEPRELLARLRAVMRRGQT 122 Query: 122 SNN----RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 S + + G +++ V G L + +IL L G+ +++ + A+ Sbjct: 123 SPHAGSTPLQFGRLQIDPGAMVARVDGRPCDLTTHQFQILLVLARAAGRVLSRDALMDAL 182 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 G EA + ++ H+S++R ++ + + + R GY Sbjct: 183 RGEALEAFD-RSIDVHVSRIRAEIEDDPKHPRRIITVRGAGYVF 225 >gi|78222505|ref|YP_384252.1| two component transcriptional regulator [Geobacter metallireducens GS-15] gi|78193760|gb|ABB31527.1| two component transcriptional regulator, winged helix family [Geobacter metallireducens GS-15] Length = 240 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 40/226 (17%), Positives = 76/226 (33%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + G +G + S E + R + ++ L G Sbjct: 8 ILLVEDEMHLARGICFNLEMEGYRVSHVESGEEALERLAYDRFALIILDVML--PGMDGF 65 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI-----LARVAAI 115 + IR S+VP++ ++ + SG DD + KP E + Sbjct: 66 AVCERIRTMDSRVPVLILTARSDEGARVTGLQSGADDYLTKPFSLNEFLLRVGGMLRRSS 125 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + R + G VF L E ++L G+ +++ +I Sbjct: 126 WYRPEPVEEAYRFGDNEVFLLSYHARTAQGEIDLTELEVKMLSLFFQREGEAISRREILE 185 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220 ++G + E +++ I +LRK + R LGY Sbjct: 186 NVWG-YTSDTETRTLDNFIVRLRKYFEPNPARPIYFHTVRGLGYRF 230 >gi|295091969|emb|CBK78076.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Clostridium cf. saccharolyticum K10] Length = 228 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 43/227 (18%), Positives = 86/227 (37%), Gaps = 10/227 (4%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVS---AIEAFLI-GK 56 + + +D +++ G F + E A+ D+ + L Sbjct: 4 LIYVTEDDENIRNLICVALESFGYQTRSFETAEEALEAVKEAQGDLPSLFVFDWMLPGMD 63 Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI---HHREILARVA 113 G + + ++P++ ++ S + D G DD + KP + + Sbjct: 64 GMAAVGKLKAAAETKKIPVMMLTAKDSELDVVAGLDGGADDYMTKPFGILEFSARIRNLL 123 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + K G I + + R+ ++G+ L +E +L YLM N + V + ++ Sbjct: 124 KRFSDDKQEGKNLSVGDISIDLEKREVRMRGQEVELTLKEYELLCYLMENTSRVVTREEL 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I+G +D E ++ HI LR+KL + + R +GY I Sbjct: 184 LDRIWG-YDYDGETRTLDMHIKTLRQKLGEAGHS--IKTVRGVGYRI 227 >gi|293374354|ref|ZP_06620681.1| putative regulatory protein VanR [Turicibacter sanguinis PC909] gi|292647017|gb|EFF65000.1| putative regulatory protein VanR [Turicibacter sanguinis PC909] Length = 230 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 45/229 (19%), Positives = 86/229 (37%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD ++ L DG + + E L + + + + + + Sbjct: 5 ILVADDNQDIRQILQILLTGDGYEVVTACNGEEAIELMDES---IGLVILDVEMPKKSGI 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV--------A 113 + IR S VP++ ++ Y F +G DD + KP + ++L RV Sbjct: 62 VVCSEIRQKSFVPILFLTAYGQESDKTMGFSAGGDDYITKPFSNSDLLIRVKALLRRAYQ 121 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 G + V + ++G+ L E IL L+ +R K + QI Sbjct: 122 YHSTTQVKVEPTITIGDLVVDLNSTRVILEGKEVSLTTTEYEILRLLITHRKKIFSMEQI 181 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 + +I+ + + +N V H+ LRKK+ + + GY +D Sbjct: 182 YQSIWNDSGQVIGDNAVMVHVRNLRKKIEKDSKNPVYIKTAWGKGYYVD 230 >gi|319935317|ref|ZP_08009755.1| hypothetical protein HMPREF9488_00586 [Coprobacillus sp. 29_1] gi|319809725|gb|EFW06126.1| hypothetical protein HMPREF9488_00586 [Coprobacillus sp. 29_1] Length = 228 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 46/220 (20%), Positives = 102/220 (46%), Gaps = 3/220 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + A +E + + D+ ++ L +E Sbjct: 5 LIVEDDIALAKSLKAALEVKDYQIEVADCYNLAIRMFQHMTFDILVVDIQL--PDGDGIE 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L IR SQ+P++ ++ + + + +SG DD + KP +E+ AR+ A+ RR + Sbjct: 63 LCEYIRKQSQLPILFLTANDNEEMLVKGLNSGGDDYMTKPFRIKELYARLQALLRRSQSL 122 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 ++ G +++ R+ ++ + L + IL+ LM ++ + + ++Q+ AI + Sbjct: 123 QDKMIVGNLQIDLQRREVFIEKQEVHLSTIDFDILKMLMIHKNQVLTRSQLLEAI-DQEN 181 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 VE+N + H+ +LR KL G +++ R +GY ++ Sbjct: 182 NFVEDNTLSVHVKRLRDKLGIYHGHSYIETVRGIGYRLNK 221 >gi|253577302|ref|ZP_04854620.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251843306|gb|EES71336.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 241 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 44/233 (18%), Positives = 91/233 (39%), Gaps = 14/233 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + ++G + + + D+ ++ L G Sbjct: 5 LLVIEDEPTLSRLLSYNLTNEGYEVIVEDHGQIGYETALRQDFDLILLDLML--PGMNGF 62 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILA 110 E+ +R+ + P+I ++ + + + SG DD + KP Sbjct: 63 EIMSKLRSEGVKTPVIILTAKNAEEEVVQGLKSGADDYITKPFGVAELLARVAAVLRRST 122 Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + + N++ G + ++ + + + GE L +E +L YL G + + Sbjct: 123 GKEEREKPAEQDNSQIVLGALTIYPEKYEVTLNGEPITLRPKEFEVLLYLARKPGVVMTR 182 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 + +A++G FD + V+ H+S LRKKL +DS R +GY + N Sbjct: 183 DDLMNAVWG-FDYIGGQRTVDVHVSSLRKKLELDPQSVHIDSIRGVGYKLVVN 234 >gi|125623751|ref|YP_001032234.1| two-component system regulator llrA [Lactococcus lactis subsp. cremoris MG1363] gi|8177554|gb|AAF73970.1| putative response regulator Rra [Lactococcus lactis subsp. cremoris MG1363] gi|124492559|emb|CAL97502.1| two-component system regulator llrA [Lactococcus lactis subsp. cremoris MG1363] gi|300070520|gb|ADJ59920.1| two-component system regulator llrA [Lactococcus lactis subsp. cremoris NZ9000] Length = 230 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 84/224 (37%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + +G + E ++ +S D+ ++ L Sbjct: 6 ILIIEDEKNLARFVSLELEHEGYATEIKDNGRSGIEEATSKDYDLILLDLML--PELDGF 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAIY 116 E+ R +R P+I ++ S + D G DD + KP R + Sbjct: 64 EVARRLRKEKDTPIIMMTARDSTMDRVAGLDIGADDYITKPFAIEELLARVRAFFRREEH 123 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + R +V L RRE +L LM N G V + + S Sbjct: 124 GHAVERAENTSFRDLVIDKTNRTVHRGKKVIDLTRREYDLLLTLMQNVGDVVTREHLVSQ 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G ++E E NVV+ +I LR K+ + + + R LGY + Sbjct: 184 VWG-YEEGTETNVVDVYIRYLRNKIDVEGQDSYIQTVRGLGYVM 226 >gi|288960015|ref|YP_003450355.1| DNA-binding two-component response regulator [Azospirillum sp. B510] gi|288912323|dbj|BAI73811.1| DNA-binding two-component response regulator [Azospirillum sp. B510] Length = 219 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 55/219 (25%), Positives = 98/219 (44%), Gaps = 9/219 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + +G +++G E +L + D ++ L L Sbjct: 4 LVVEDTPELARQLTQRLAREGYAVDGAADGEEGRFLGETEPYDAVILDLGL--PKIDGLT 61 Query: 63 LPR-IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120 + R RA VP++ ++ + + D+G DD + KP E+LARV A I R Sbjct: 62 VLRGWRRAGISVPVLILTARGAWTEKVQGIDAGADDYLAKPFSMEELLARVRALIRRAKG 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 ++ G + + + V GE L E R+L YLM +G+ V++T++ +Y Sbjct: 122 HASAEITCGGVVLDTRTGRVTVDGEPIELTAFEYRVLSYLMHRKGQVVSRTELTEHVY-A 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 D + N +E + +LR+KL G D + + R LGY Sbjct: 181 QDFDRDSNTIEVFVGRLRRKL----GVDVIKTVRGLGYR 215 >gi|326202731|ref|ZP_08192599.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] gi|325987315|gb|EGD48143.1| two component transcriptional regulator, winged helix family [Clostridium papyrosolvens DSM 2782] Length = 231 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 38/224 (16%), Positives = 99/224 (44%), Gaps = 9/224 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D +++ + G + S E + + + ++ + ++ G + Sbjct: 5 LIVEDEEDIREFIVINLKRTGFEVVEAESGEEALAIIQNEK-NLDIMLLDIMLPGIDGYK 63 Query: 63 LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + R +S + +I ++ + G DD + KP E++AR+ AI RR+ Sbjct: 64 VLKKTRENNSSIGVIMLTAKSQEIDKVTGLSYGADDYIVKPFSPIELIARIDAILRRINN 123 Query: 122 SNNRAETG-----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 NN ++ + + + + L + E ++E + N GK +++ +I + Sbjct: 124 VNNIENKKILTSGIFKLDLESKRFFKEDKEIELTQTEFLLIELFLKNEGKVLSRNEILDS 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219 ++G D + VV+ ++ ++R+K+ + + +++ R GY Sbjct: 184 VWG-SDYFGDIKVVDVNMRRVRQKVENDSSSPEYINTVRGFGYK 226 >gi|114569494|ref|YP_756174.1| two component transcriptional regulator [Maricaulis maris MCS10] gi|114339956|gb|ABI65236.1| two component transcriptional regulator, winged helix family [Maricaulis maris MCS10] Length = 223 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 39/220 (17%), Positives = 77/220 (35%), Gaps = 2/220 (0%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D + G + E + +A DV ++ + G + Sbjct: 3 ILIVEDDREAASYIRKGLRESGHVADHAGDGEEGLEMARAAEYDVLVVDRMMPRMDGLSM 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E R + V ++ + V A R Sbjct: 63 VEALRADDDRTPVLILSALGEVDDRVEGLKAGGDDYLVKPYAFAELLARVEALARRRDPD 122 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + G + + R +GE L RE R+LE+LM + G+ V +T + ++ Sbjct: 123 TVRTKLVVGDLEMDLLARTVIREGEDILLQPREFRLLEFLMKHSGQVVTRTMLLEKVWD- 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + NV++ HIS+LR K+ + + R GY + Sbjct: 182 YHFDPQTNVIDVHISRLRSKIDKPFPRSLLHTVRGAGYRL 221 >gi|89091881|ref|ZP_01164836.1| two-component system regulatory protein [Oceanospirillum sp. MED92] gi|89083616|gb|EAR62833.1| two-component system regulatory protein [Oceanospirillum sp. MED92] Length = 229 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 56/221 (25%), Positives = 101/221 (45%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++ + + ++E E +L D++ ++ L + Sbjct: 3 LLVVEDDPDLRRQLVTALENKNYTVEETADGEEALYLGQEYPYDLAIVDLGL--PKLSGI 60 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119 E+ R R + P+I ++ Q ++ ++G DD + KP H E+ AR+ A+ R Sbjct: 61 EVIRQWRDDGKEFPIIILTARGDWQDKVEGLEAGADDYLVKPFHMEELQARLNALLRRAA 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S E GPI++ + GR E L E R EYL+ N GK ++K+++ +Y Sbjct: 121 GHSKPVLEFGPIKMDTTGRVVYRHNEPVKLTSYEYRTFEYLVLNAGKTISKSELTEHLYH 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D + NV+E I +LR+KL P+ + R LGY Sbjct: 181 Q-DFDRDSNVLEVFIRRLRQKLDPDQDLQPITTVRGLGYRF 220 >gi|116049581|ref|YP_791614.1| two-component response regulator KdpE [Pseudomonas aeruginosa UCBPP-PA14] gi|296389989|ref|ZP_06879464.1| two-component response regulator KdpE [Pseudomonas aeruginosa PAb1] gi|313106655|ref|ZP_07792876.1| two-component response regulator KdpE [Pseudomonas aeruginosa 39016] gi|115584802|gb|ABJ10817.1| two-component response regulator KdpE [Pseudomonas aeruginosa UCBPP-PA14] gi|310879378|gb|EFQ37972.1| two-component response regulator KdpE [Pseudomonas aeruginosa 39016] Length = 230 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 49/223 (21%), Positives = 91/223 (40%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LIDD ++ G + + E + R D+ ++ L Sbjct: 8 ILLIDDEPQIRKFLRISLNAQGYRVLEAGTGEEGLAQAALNRPDLVVLDLGL--PDRDGQ 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 ++ R +R SQVP++ +S S + D G +D V KP +E LARV + Sbjct: 66 DILRDLREWSQVPVLVLSVRASEGEKVLALDGGANDYVTKPFGIQEFLARVRVLLRQAAQ 125 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + GP++V R ++G L R+E +L L + G+ V + Q+ I+ Sbjct: 126 GESPEAAVAVGPLQVDFAYRRVTLEGAEVALTRKEYAVLAALARHLGRVVTQQQLLKDIW 185 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 G + + + + LR+KL + + ++ +GY + Sbjct: 186 GPTHVE-DTHYLRVVVGHLRQKLGDDPASPRFLVTEAGVGYRL 227 >gi|331268818|ref|YP_004395310.1| winged helix family two component transcriptional regulator [Clostridium botulinum BKT015925] gi|329125368|gb|AEB75313.1| two component transcriptional regulator, winged helix family [Clostridium botulinum BKT015925] Length = 232 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 46/226 (20%), Positives = 88/226 (38%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ ++G+ + + + ++ + Sbjct: 6 ILVVDDDKEIREAIKIYLKNEGLKVYEAQDGIDALMILQEEEIHLILMDIM--MPKMDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + IR +P+I +S + + G DD V KP + E++ARV + RR Sbjct: 64 KTTFKIREKKDIPIIMLSAKSEDTDKILGLNIGADDYVTKPFNPLELIARVKSQLRRYVK 123 Query: 122 SNNRAETGP------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 +N I + + V GE L E +ILE+LM + G+ + QI+ Sbjct: 124 FSNYKINKEELKVGGIILNKIAKRVTVDGEEIRLTPIEYKILEFLMESIGQVFSIEQIYE 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++ E N V HI ++R+K+ N + +GY I Sbjct: 184 NVWNEPCYNAE-NTVPVHIRRIREKIEINPKEPRYLKVVWGIGYKI 228 >gi|303256413|ref|ZP_07342427.1| DNA-binding response regulator [Burkholderiales bacterium 1_1_47] gi|302859904|gb|EFL82981.1| DNA-binding response regulator [Burkholderiales bacterium 1_1_47] Length = 218 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 42/222 (18%), Positives = 92/222 (41%), Gaps = 9/222 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D ++ + +G +++ + + ++ L G+ L Sbjct: 3 ILLVEDDEMIGEAVADGLKGEGYAVDWVKDGNSAIIALDTTPFSLVILDLGL--PGKDGL 60 Query: 62 ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + + I + P++ + ++ ++ D+G DD + KP E+ AR+ A+ RR Sbjct: 61 AVLKEIRFRKNHTPVLVTTARDTVNDRIEGLDAGADDYLIKPYDLDELSARIRALLRRSA 120 Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++ + R+ GE L +E +L L G +++ Q+ +Y Sbjct: 121 GRSDPIIRRGRLTINPSTREVLFNGESVLLSSKEYALLFALAERPGIVLSRAQLEEKLY- 179 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ + N +E HI LRKKL + + R +GY ++ Sbjct: 180 NYESLIGSNAIEVHIHHLRKKLSEDS----IKTVRGVGYVLE 217 >gi|289679985|ref|ZP_06500875.1| response regulator receiver:transcriptional regulatory protein, C-terminal [Pseudomonas syringae pv. syringae FF5] Length = 249 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 48/225 (21%), Positives = 93/225 (41%), Gaps = 9/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD +++ ++ G ++ DV ++ L GE L Sbjct: 23 LIVDDDVAIRELLCDYLTRFNINASGVTDGTQMRQALTAETFDVVVLDLML--PGEDGLS 80 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R +R+ S +P++ ++ + + G DD + KP RE++AR+ I RR++ Sbjct: 81 LCRWLRSTSDIPILMLTARCEPTDRIIGLELGADDYMAKPFEPRELVARIQTILRRVRDE 140 Query: 123 NNRAETGPIRVFSD-----GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + T + G V PL E R+L + + +++ Q+ A Sbjct: 141 RSDQRTTIRFDAWRLNSVLRQLTAADGLVVPLSNAEFRLLRVFLERPHRVLSREQLLDAA 200 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 G EA + ++ +S+LR+KL + + + R GY D Sbjct: 201 RGRSIEAFD-RSIDLLVSRLRQKLGDDPKNPQLIKTVRGEGYLFD 244 >gi|209573922|gb|ACI62899.1| two component response regulator CusR1 [Acidithiobacillus thiooxidans] Length = 224 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 43/222 (19%), Positives = 93/222 (41%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + F + G ++ ++ + L +V ++ L + Sbjct: 3 ILVIEDESKTAAFLKKGFNELGYVVDVADNGVDGQHLAEIGEYEVIVLDLMLPQR--DGW 60 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119 + + IR H P+I ++ ++ ++ G DD + KP E+LAR+ +I R Sbjct: 61 WVLQEIRKRHPDQPVILLTALDAVAQRVEGLRRGADDYLVKPFAFSELLARIHSILRRSN 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + + L +E R+L YLM G+ + +T+I ++ Sbjct: 121 LRTEETIYYADLEMDLLRHKIWRAATPINLAPQEFRLLAYLMRFPGEVLTRTRIAEQVWD 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + NVV+ I +LR+K+ + + + R +GY ++ Sbjct: 181 MH-FESDSNVVDVAIRRLRRKVDDPFPDKLIHTLRGVGYVLE 221 >gi|209516071|ref|ZP_03264931.1| two component transcriptional regulator, winged helix family [Burkholderia sp. H160] gi|209503531|gb|EEA03527.1| two component transcriptional regulator, winged helix family [Burkholderia sp. H160] Length = 231 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 42/222 (18%), Positives = 90/222 (40%), Gaps = 8/222 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + + G ++ ++ + + D ++ L G L Sbjct: 6 LIVEDDSSIAANLYDYLEAGGYEVDVASNGNAGLQMALADSWDAILLDLSL--PGMDGLT 63 Query: 63 LPRIIRAH--SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR--VAAIYRR 118 L R +R P++ ++ +L L F G DD + KP +E+ AR R Sbjct: 64 LCRRLREEAGRDTPVLMLTARDALDDKLAGFVHGADDYLVKPFSLKEVGARLGAMIKRYR 123 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 +V+ +R+ E G LP + +L LM + + + ++ S ++ Sbjct: 124 GQVAAMELRFADVRLDLSTMTVERAGRAVKLPPKCLHLLRILMQSPRRTFTRAELESDVW 183 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G +E + + + +H+ LR+ LR D +++ +GY + Sbjct: 184 G--EELPDSDTLRTHVYTLRRALRGPGETDVIETLHGVGYRL 223 >gi|149190294|ref|ZP_01868568.1| transcriptional activator protein IrlR [Vibrio shilonii AK1] gi|148835901|gb|EDL52864.1| transcriptional activator protein IrlR [Vibrio shilonii AK1] Length = 227 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 42/224 (18%), Positives = 92/224 (41%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + G +++ +L ++ D+ ++ L Sbjct: 3 LLVIEDEEKAGAYLKKGLIESGYTVDLSTDGVDALYLATTNDYDLIVLDIML--PKLNGW 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYR 117 +L + +R+ P+I +S ++ + + G +D + KP E + Sbjct: 61 QLLQTLRSSDIPTPVIILSAKDQVEDRVKGLELGANDYLVKPFAFIELLARVKNALRHQT 120 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + + + R + PL +E +LEYL A RG+ V +TQI SA+ Sbjct: 121 TSIKTESVLCIADLSLDLLKRKATRNNDTIPLTAKEFSLLEYLFAKRGQVVTRTQIASAV 180 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + + + NV+++ + +LR K+ + + R +GY +D Sbjct: 181 WDM-NFDSDTNVIDAAVKRLRSKIDKPYQIKLIQTVRGMGYKLD 223 >gi|270290038|ref|ZP_06196264.1| two-component system, OmpR family, phosphate regulon response regulator OmpR [Pediococcus acidilactici 7_4] gi|270281575|gb|EFA27407.1| two-component system, OmpR family, phosphate regulon response regulator OmpR [Pediococcus acidilactici 7_4] Length = 229 Score = 135 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 38/225 (16%), Positives = 86/225 (38%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + ++G + + D+ + ++ + Sbjct: 3 ILVVDDDKEIVELLDIYIKNEGYEPVSAYNGKEALTKL-HTDPDIKLMILDIMMPEMDGM 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R +R S++P++ +S + +G DD V KP + EI+ARV ++ RR + Sbjct: 62 QVVREVRKDSELPILMLSAKTDDMDKIKGLLTGADDYVTKPFNPLEIMARVKSLLRRSEK 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF------PLPRRERRILEYLMANRGKRVAKTQIFS 175 + + + + L E IL L ++ + + +IF Sbjct: 122 DVTDDAPEILDIGPLTINSDSHEVKTLAGKAVQLTALEFGILYLLASHPNRVFSADEIFE 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYS 219 ++ + + V H+S LR K+ G +++ +GY Sbjct: 182 RVW-QQESVISAKTVMVHVSHLRDKIEEATGGEKVIETVWGVGYK 225 >gi|259505958|ref|ZP_05748860.1| DNA-binding response regulator [Corynebacterium efficiens YS-314] gi|259166439|gb|EEW50993.1| DNA-binding response regulator [Corynebacterium efficiens YS-314] Length = 236 Score = 135 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 92/224 (41%), Gaps = 10/224 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + G ++ + + R D ++ G E Sbjct: 12 LVVDDEPNIVELLTVSLKFQGFNVMTASDGNEGLKIAREFRPDAYILDVM--MPGMDGFE 69 Query: 63 LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L +RA P++ ++ +++ + G DD V KP E++ R+ I RR Sbjct: 70 LLTKLRAEGLDGPVLYLTAKDAVENRIHGLTIGADDYVTKPFSLEEVITRLRVILRRGGS 129 Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + + + + GE+ L E +L YLM N ++K +I Sbjct: 130 VESESNDATLTYADLTLNDETHEVTKAGELVDLSPTEFNLLRYLMLNAEVVLSKAKILDN 189 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +D + NVVES+IS LR+K+ + + + R +GY + Sbjct: 190 VW-HYDFGGDGNVVESYISYLRRKV-DTHEPQLIQTVRGVGYVL 231 >gi|257867146|ref|ZP_05646799.1| two-component system response regulator [Enterococcus casseliflavus EC30] gi|257873480|ref|ZP_05653133.1| two-component system response regulator [Enterococcus casseliflavus EC10] gi|257801202|gb|EEV30132.1| two-component system response regulator [Enterococcus casseliflavus EC30] gi|257807644|gb|EEV36466.1| two-component system response regulator [Enterococcus casseliflavus EC10] Length = 235 Score = 135 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 48/228 (21%), Positives = 88/228 (38%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWL--QSSAREDVSAIEAFLIGKGEK 59 +L++D + +G + L Q + D+ ++ L Sbjct: 5 ILLVEDEESLASFIQTELTFEGYDTVWAKDGQEALTLFNQQANAFDLILLDWMLPI--YD 62 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 + + R IR S +P++ ++ + D G+DD + KP E+ AR+ I RRL Sbjct: 63 GITVARRIRKESDIPILMMTARNQTADVVTGLDVGLDDYLTKPFEIEELFARIRVIERRL 122 Query: 120 KVSNNRAETGPI-------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + + + +V GE L +E IL LM + Sbjct: 123 QREAKQQKNQQNQLVAGELMMDIAKHLVQVAGETIELTPKEFGILYELMKEPEVVKTRDD 182 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + I+G ++ + NVV+ +I LR KL + + R LGY + Sbjct: 183 LLNEIWG-YEYDGQTNVVDVYIRTLRNKLDVCGKGKMIATVRGLGYVL 229 >gi|283797816|ref|ZP_06346969.1| phosphate regulon response regulator PhoB [Clostridium sp. M62/1] gi|291074501|gb|EFE11865.1| phosphate regulon response regulator PhoB [Clostridium sp. M62/1] Length = 228 Score = 135 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 43/227 (18%), Positives = 86/227 (37%), Gaps = 10/227 (4%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVS---AIEAFLI-GK 56 + + +D +++ G F + E A+ D+ + L Sbjct: 4 LIYVTEDDENIRNLICVALESFGYQTRSFETAEEALEAVKEAQGDLPSLFVFDWMLPGMD 63 Query: 57 GEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI---HHREILARVA 113 G + + ++P++ ++ S + D G DD + KP + + Sbjct: 64 GMAAVGKLKAAAETKKIPVMMLTAKDSELDVVAGLDGGADDYMTKPFGILEFSARIRNLL 123 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + K G I + + R+ ++G+ L +E +L YLM N + V + ++ Sbjct: 124 KRFSDDKQEEKNLSVGDISIDLEKREVRMRGQEVELTLKEYELLCYLMENTSRVVTREEL 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I+G +D E ++ HI LR+KL + + R +GY I Sbjct: 184 LDRIWG-YDYDGETRTLDMHIKTLRQKLGEAGHS--IKTVRGVGYRI 227 >gi|222529736|ref|YP_002573618.1| winged helix family two component transcriptional regulator [Caldicellulosiruptor bescii DSM 6725] gi|222456583|gb|ACM60845.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor bescii DSM 6725] Length = 234 Score = 135 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 46/223 (20%), Positives = 88/223 (39%), Gaps = 7/223 (3%) Query: 4 LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63 ++DD + + G S++ F + E + D+ ++ L E+ Sbjct: 8 IVDDEKDILELVSEYLTQKGYSVKTFENGESFLKEFEKSEPDIVILDIML--PDIDGYEI 65 Query: 64 PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH----HREILARVAAIYRRL 119 + IR +S+VP+I +S + + G DD + KP I + I + Sbjct: 66 CKRIRKNSEVPIIMLSAKGEELDKVLGLELGSDDYIPKPFSLSELEARIKKILRRINKSP 125 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +N ET I+V + R+ G L +E L+ K + ++ I I+G Sbjct: 126 IKQDNVIETFGIKVDFNQRNVFYNGTHIELSPKEFETFALLLKESTKVLKRSYILERIWG 185 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +E +V+ + +LRKK+ + + LGY ++ Sbjct: 186 DPALY-DERMVDDVVKRLRKKILQYNLPVEIKTMWGLGYKLEE 227 >gi|152980160|ref|YP_001353976.1| phosphate regulon two-component response regulator [Janthinobacterium sp. Marseille] gi|151280237|gb|ABR88647.1| phosphate regulon two-component response regulator [Janthinobacterium sp. Marseille] Length = 229 Score = 135 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 41/222 (18%), Positives = 94/222 (42%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++++D + + G ++ + + ++ L G ++ Sbjct: 8 ILIVEDEPPIIELVTFTLKGAGWNVAAVQNAGDAWDFIQQRLPQLILLDWMLPDQSGLRL 67 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118 L R R +++P+I ++ + + D+G DD V KP RE+ AR+ A + Sbjct: 68 LSRIRADRQFNELPIIMLTAKSMEEDKIAGLDNGADDYVTKPFSPRELTARINALLRRKT 127 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + S G I + + E + E ++L++ +A+ + +++Q+ ++ Sbjct: 128 PEHSQTLMTAGNISLDPVSCSVSMNDEKIDIGHAEFKLLKFFLAHPDRVFSRSQLLDKVW 187 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G +EE V+ H+ +LRK L++ + + R +GY + Sbjct: 188 GDH-VVIEERTVDVHVLRLRKALKD--AEHLIKTVRSVGYML 226 >gi|125718486|ref|YP_001035619.1| two-component response transcriptional regulator [Streptococcus sanguinis SK36] gi|125498403|gb|ABN45069.1| Two-component response transcriptional regulator (CheY-like receiver and winged-helix DNA-binding domains), putative [Streptococcus sanguinis SK36] Length = 228 Score = 135 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 40/220 (18%), Positives = 86/220 (39%), Gaps = 6/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D +++ + G + + + ++ L Sbjct: 4 ILLVEDDPVIRQMIKKMLEQWGFQVVAVEDFMDVLTIFVREDPHLVLMDIGLPL--FNGY 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 + IR S VP++ +S + + G DD V KP + LA+V Sbjct: 62 HWCQEIRKISTVPIMFLSSRDQSMDIVMAINMGADDYVTKPFDNNVFLAKVQGLLRRSYE 121 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + E + + D +G+V L + E +IL L + VA+ + ++ Sbjct: 122 FGNDQSLLEHQGVILNLKSTDLVFEGKVVTLTKNEFQILRVLFEHSDGIVARDDLMKELW 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 D +++N + ++++LRKKL + +++K+ +GY Sbjct: 182 -NSDFFIDDNTLSVNVARLRKKLEEHGLKNFIETKKGIGY 220 >gi|710006|dbj|BAA06476.1| ycbL [Bacillus subtilis] Length = 226 Score = 135 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 40/226 (17%), Positives = 81/226 (35%), Gaps = 11/226 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L++D + + +G + E L D+ ++ L ++ Sbjct: 1 MLVEDDHSISEMVDHYLTKEGFGIVHAFDGEEGIRLFQQGSYDLVLLDIML--PKLNGMD 58 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI-------LARVAAI 115 +IIR S +P++ IS G DD + KP E+ + R Sbjct: 59 FLKIIREKSNIPVLMISAKDGDVDKALGLGFGADDYIAKPFSMIELTARVKAAIRRATQY 118 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 N + + D GE L E ++L +N K K QI+ Sbjct: 119 SAEEPAVNKVIRIHQLAIDIDNVSVLKNGEPLQLTSTEWQLLCLFASNPKKVFTKDQIYR 178 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 +++ ++N++ H+ +LR+K+ + + + +GY + Sbjct: 179 SVWNEEYFD-DQNIINVHMRRLREKIEDDPSSPQYIKTLWGIGYKL 223 >gi|89096703|ref|ZP_01169595.1| response regulator [Bacillus sp. NRRL B-14911] gi|89088718|gb|EAR67827.1| response regulator [Bacillus sp. NRRL B-14911] Length = 223 Score = 135 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 44/221 (19%), Positives = 90/221 (40%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ G + N E + D++ ++ G Sbjct: 3 IMVVDDDVYIQKLVSIHLSRKGYQVVKANDGEEALKILEGMNVDLAVVDVM--MPGMDGF 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL +I+ +P+I ++ L F SG +D + KP +E+L RVA + RR++ Sbjct: 61 ELTKILSEDYDIPVILLTAKGQLDDKERGFLSGSEDYIVKPFEVKELLYRVAVVLRRMER 120 Query: 122 SNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + V + + E P +E +L L + K + + ++G+ Sbjct: 121 AMETVIKAGNMVLDRKNFEVMINQETILFPLKEFELLSILASRIPKIAPRALLIEQVWGI 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D E + +HI+++R +LR + + R +GY ++ Sbjct: 181 -DYEGSEQTLNTHINRIRDRLRKHGATVEIQTVRGIGYKLE 220 >gi|317404121|gb|EFV84571.1| two-component system response regulator [Achromobacter xylosoxidans C54] Length = 243 Score = 135 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 44/227 (19%), Positives = 84/227 (37%), Gaps = 12/227 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D A + + D+G ++E D ++ L G LE Sbjct: 8 LIVEDDAHIAELLRLHLRDEGYAVEYAADGNEGMRRLEEGGWDALVLDLML--PGIDGLE 65 Query: 63 LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-------REILARVAA 114 + + RA P+I S S + + G DD + KP R +L R A Sbjct: 66 ICKRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSMLELVARVRALLRRTEA 125 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + R ++ + + R V L RE +L + N K ++ + Sbjct: 126 LERNARIDAGSLRQHGVAIDPIARTASVDERRLELTPREFDLLHFFARNPDKVFSRLDLL 185 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + ++G + E+ V +HI++LR K+ + + + GY Sbjct: 186 NQVWG-YQHEGYEHTVNTHINRLRTKIEADPSNPQRILTVWGRGYKF 231 >gi|297194010|ref|ZP_06911408.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|197722840|gb|EDY66748.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 225 Score = 135 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 44/223 (19%), Positives = 87/223 (39%), Gaps = 6/223 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L +D A + + +G +E + D+ ++ L G LE Sbjct: 5 LLAEDDASISEPLARALRREGYEVEVREDGPTALDAGLAGGVDLVVLDLGL--PGMDGLE 62 Query: 63 LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-HREILARVAAIYRRLK 120 + R +RA +P++ ++ T+ D+G DD V KP + A + R Sbjct: 63 VARRLRAEGHTIPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGAA 122 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 T +R+ + + E L +E +L L+ + G+ V + Q+ ++ Sbjct: 123 EPAPAPATHGVRIDVESHRAWMGDEELQLTAKEFDLLRVLVRDAGRVVTRDQLMREVWDT 182 Query: 181 FDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSIDW 222 + ++ HIS LRKKL + + + R +G+ + Sbjct: 183 TWWS-STKTLDMHISWLRKKLGDDAANPRYIATVRGVGFRFEK 224 >gi|91786449|ref|YP_547401.1| two component transcriptional regulator [Polaromonas sp. JS666] gi|91695674|gb|ABE42503.1| two component transcriptional regulator, winged helix family [Polaromonas sp. JS666] Length = 241 Score = 135 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 49/227 (21%), Positives = 93/227 (40%), Gaps = 12/227 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + + D+G +++ D ++ L G LE Sbjct: 8 LIVEDDTHIAELLRMHLQDEGYAVQHAADGNAGLRELERGSWDALVLDLML--PGVDGLE 65 Query: 63 LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R RA P+I S S + + G DD + KP E++ARV A+ RR Sbjct: 66 ICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVRALLRRTDA 125 Query: 122 SNNRAETG-------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 A +RV R+ +V+G+ L RE +L + + GK ++ + Sbjct: 126 LARNARMESGLLELGNLRVDPVAREVQVEGKSVELTPREFDLLYFFARHPGKVFSRLNLL 185 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + ++G + E+ V +HI++LR K+ + + + GY + Sbjct: 186 NQVWG-YQHDGYEHTVNTHINRLRMKVEADPTEPRRILTVWGRGYKL 231 >gi|77359341|ref|YP_338916.1| transcriptional regulator [Pseudoalteromonas haloplanktis TAC125] gi|76874252|emb|CAI85473.1| Transcriptional regulatory protein CpxR [Pseudoalteromonas haloplanktis TAC125] Length = 229 Score = 135 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 49/226 (21%), Positives = 92/226 (40%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD + + G +++ + E L + + ++ L Sbjct: 3 LLMIDDDTGLCELLSEYLTAQGFNVQSVHDGEQGLKLAQANDYALILLDVML--PTLDGF 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + +R P+I ++ + + G DD + KP +HRE+LARV AI RR++ Sbjct: 61 EVLKQLRQTKLTPVIMLTAKGEDFDRIFGLELGADDYIPKPFNHRELLARVKAITRRIEH 120 Query: 122 SNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 T + + R+ ++ L E IL L G+ V+K QI Sbjct: 121 ITTMNTTSSNKLVVNGVTINLAAREALIKQTTLTLTGTEYEILALLAKRAGEVVSKEQIS 180 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + G + + ++ H+S +RKK+ L + + + R GY Sbjct: 181 EDVLGRRLASFD-RSIDMHVSNIRKKIAEHLPNELIKTIRGTGYVF 225 >gi|17548876|ref|NP_522216.1| two component response regulator transcription regulator protein [Ralstonia solanacearum GMI1000] gi|17431126|emb|CAD17806.1| probable two component response regulator transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 228 Score = 135 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 43/223 (19%), Positives = 97/223 (43%), Gaps = 6/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A + + G ++ + L + D+ ++ L Sbjct: 3 LLVVEDEAKTGEYLQQGLTEAGFVVDLARNGVDGLHLATMGDYDLLVLDVML--PDLDGW 60 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118 ++ + +RA + VP++ ++ S+ + + G DD + KP E+LARV Sbjct: 61 QVVQSLRAAACAVPVLFLTARDSVGDRVKGLELGADDYLVKPFAFAELLARVRTLLRRGS 120 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 V+ +R + + + R G+ L +E +LE L RG+ + ++ I S ++ Sbjct: 121 TPVALDRIQIADLVLDLARRRASRSGQRIALTSKEFALLELLARRRGEVLPRSLIASQVW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + + NV++ I +LR K+ + + + R +GY ++ Sbjct: 181 DM-NFDSDTNVIDVAIRRLRAKIDDDFTPKLIQTVRGMGYVLE 222 >gi|319744631|gb|EFV96979.1| DNA-binding response regulator [Streptococcus agalactiae ATCC 13813] Length = 221 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 45/220 (20%), Positives = 101/220 (45%), Gaps = 7/220 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 + ++D L+++G + G ++ +S D++ + + L Sbjct: 7 ILTVEDDKLIREGISEYLSEFGYTVIQAKDGREALSKFNS---DINLVILDIQIPFINGL 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IR S +P++ ++ + + +D F + VD V KP + AR+ ++ ++ Sbjct: 64 EVLKEIRKKSNLPILILTAFSDEEYKIDAFTNLVDGYVEKPFSLPVLKARIDSLIKKNFG 123 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + E + V + ++ E + +E IL+ L+ N G+ + + QI ++ Sbjct: 124 HLEKFEYKNLSVNFNSYTAKINDEKIDVNAKELEILKCLLDNDGQVLTRMQIIDYVWKDS 183 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +E + VV+ +I +LRKKL+ D + + R +GY ++ Sbjct: 184 EEIPYDRVVDVYIKELRKKLQL----DCITTIRNVGYKLE 219 >gi|293402553|ref|ZP_06646688.1| DNA-binding response regulator [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304067|gb|EFE45321.1| DNA-binding response regulator [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 220 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 42/219 (19%), Positives = 92/219 (42%), Gaps = 3/219 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + + + S + + D+ ++ L G Sbjct: 3 ILIIEDNDDINAMIADYLMKNKYQCDQAYSGTEGKMYFLNNHYDLIVMDLML--PGLSGE 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L IR S+VP+I ++ ++ + ++ +G DD + KP E+LAR+ R+ Sbjct: 61 TLLNEIRKQSKVPIIILTAKDTVDSKVNLLSAGADDYLCKPFDLEELLARIQVQLRKSDN 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 S+ + + + + D ++ L + E ILE LM N + K +I+ + Sbjct: 121 SSELLQFKELTLNNRAYDAFIKSYSLYLTKHEYYILELLMKNPKRVFTKQEIYEYAWNDS 180 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ + +HIS +RKK++ + + + +G+ + Sbjct: 181 -YYGDDKTITTHISNIRKKIKQVASEEYIKTIWGIGFKM 218 >gi|297192015|ref|ZP_06909413.1| response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|197719538|gb|EDY63446.1| response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 223 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 49/222 (22%), Positives = 92/222 (41%), Gaps = 10/222 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + A +G +++ + + D+ ++ L G Sbjct: 3 LLIVEDERRLARSLAAGLTAEGYAVDVVHDGLEGLHRATEGVHDLVVLDIML--PGMNGY 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118 + +RA P++ ++ + D+G DD + KP + ++ARV A R Sbjct: 61 RVCAALRAAGHDVPVLMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARVKALLRRRG 120 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + G +RV + R GE L +E +LE+L + V K +I ++ Sbjct: 121 RAGGSPVLTAGDLRVDTATRRVHAGGEEVALTAKEFAVLEHLATRTDEVVGKPEILEHVW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 F + N+VE +IS LR+KL G D + + R GY + Sbjct: 181 D-FAYEGDPNIVEVYISALRRKL----GADRILTVRGAGYRL 217 >gi|186684867|ref|YP_001868063.1| multi-component transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186467319|gb|ACC83120.1| multi-component transcriptional regulator, winged helix family [Nostoc punctiforme PCC 73102] Length = 989 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 48/222 (21%), Positives = 94/222 (42%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D L L + ++E + + D+ ++ L + Sbjct: 3 ILIVEDDGLNAYTLTNLLTNQNYAVEVATDGDAAWDCIQAYDYDLILLDVVL--PKLDGI 60 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L R IR+++ Q+P++ ++ S D+G DD + KP E++AR+ A+ RR Sbjct: 61 SLCRKIRSNNLQMPILLMTGRNSSHEKAIGLDAGADDYLVKPFDIEELVARIRALLRRPA 120 Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 V++ R+ + + PL +E +LE + N + + I ++ Sbjct: 121 VTSPPVLESGKLRLDPSSCEAVYARNLLPLTPKEFALLELFLRNSRRVFSCGMILEHLWS 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220 D EE V +HI LR+KL+ D V++ +GY + Sbjct: 181 YEDTPQEE-AVRTHIKGLRQKLKAVGAPGDLVETVYGIGYRL 221 Score = 59.7 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 11/72 (15%), Positives = 25/72 (34%), Gaps = 2/72 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ L G+ + + D+ ++ L + Sbjct: 398 ILVVDDDPQIQALLQTLLSPWGLRAIALENPLQFWETLEAVAPDMLILDVEL--PYINGI 455 Query: 62 ELPRIIRAHSQV 73 EL R++R S Sbjct: 456 ELCRLVRNDSHW 467 >gi|332995705|gb|AEF05760.1| osmolarity response regulator [Alteromonas sp. SN2] Length = 240 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 38/229 (16%), Positives = 84/229 (36%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ + G + + E + L + ++ L GE L Sbjct: 8 ILVVDDDMRLRSLLERYLVEQGYQVRSAGNAEQMDRLLERENFHLMVLDLML--PGEDGL 65 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112 + R +R P+I ++ + + G DD + KP + RE + R Sbjct: 66 SICRRLRQMGNELPIIMLTAKGDEVDRIIGLEMGADDYLPKPFNPRELLARAKAVLRRRN 125 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + E G ++ R+ L E +L+ L+ + + +++ + Sbjct: 126 SEAPGAPSKDVQVIEFGEYKLNLATREMTAGTTPLTLTSGEFAVLKSLVTHPREPLSRDK 185 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + + G D + E ++ +S+LR+ L + + + LGY Sbjct: 186 LMNLARGR-DYSALERSIDVQVSRLRRMLEKDPANPRYIQTVWGLGYVF 233 >gi|302874399|ref|YP_003843032.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] gi|307690997|ref|ZP_07633443.1| two component transcriptional regulator, winged helix family protein [Clostridium cellulovorans 743B] gi|302577256|gb|ADL51268.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] Length = 227 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 48/223 (21%), Positives = 92/223 (41%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D V + A +G + + L + ++ L + Sbjct: 4 ILIIEDEKSVLEVTKAYLEREGYRVYCAENGLEGIKLFKKNDIQLVILDLML--PDIEGE 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ +I+R S+V + ++ SL ++ + G D+ + KP+ RE+ ARV A++RR+ V Sbjct: 62 EVCKILRKISEVYIFMLTAKASLSDKIEGLNIGADEYLIKPLSPRELTARVNALFRRIGV 121 Query: 122 SNNRAETGPIRVFSDGRDPE---VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 +A + + + G L E IL L ANRG+ + I ++ Sbjct: 122 EEPKALSFSNSHLVINKTDRSVKIDGIEVSLTPNEFDILYLLAANRGRAFTREDIIERVF 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 D + +++HI LRKK+ + + +GY Sbjct: 182 -TMDFEGSDRTIDAHIKNLRKKIEENSKEPRYILTVTRIGYKF 223 >gi|169247751|gb|ACA51690.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 271 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 43/224 (19%), Positives = 90/224 (40%), Gaps = 9/224 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A + + +G + R D ++ L L Sbjct: 46 LLVVDDEAPLAELLSMALRYEGWEVRSAGDGSTAVRTAREFRPDAVVLDVML--PDMDGL 103 Query: 62 ELP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR----VAAIY 116 + R+ R +VP++ ++ +++ + +G DD V KP E++ R + Sbjct: 104 TVLARLRRERPEVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVVRLRGLLRRSG 163 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + G + + + + G+ L E +L LM + + ++K QI Sbjct: 164 AVSARPDTVLVVGDLTLDEESHEVSRGGQAIRLTATEFELLRCLMRSPRRVLSKAQILDR 223 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +D + NVVE +IS LR+K+ + + ++R GY + Sbjct: 224 VWS-YDFGGQANVVEIYISYLRRKI-DAGRAPMIHTRRGAGYLL 265 >gi|298491352|ref|YP_003721529.1| winged helix family two component transcriptional regulator ['Nostoc azollae' 0708] gi|298233270|gb|ADI64406.1| two component transcriptional regulator, winged helix family ['Nostoc azollae' 0708] Length = 233 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 39/225 (17%), Positives = 88/225 (39%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V++ +E + L + ++ L Sbjct: 6 IMIVDDDFSVRNLVYRFLSRK-YRIESAADGKSAMALFEQFNPALVILDWNL--PDVNGY 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI----HHREILARVAAIYR 117 +L + +++ + V ++ ++ + +G DD + KP + A + I Sbjct: 63 KLCQEMQSRTNVLVLILTSRNDEADKISVLAAGADDFMTKPFSLAEVEVRVEALLRRIRY 122 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + R + + +GR+ + + L E IL +L ++ G+ ++ Q+ I Sbjct: 123 IHPSQSQRLVFKQLAINPEGREVTLNDKPLALTALEFNILHFLASHPGQAWSRPQLIQKI 182 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 +G D + VV+ HI +LRKK+ + + + + R GY + Sbjct: 183 WGC-DYVGDGRVVDVHIGQLRKKMEVDSSTPEFIKTVRGYGYKFE 226 >gi|166710603|ref|ZP_02241810.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzicola BLS256] Length = 259 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 46/227 (20%), Positives = 96/227 (42%), Gaps = 12/227 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD ++ G ++ ++ + + R D+ ++ GE L Sbjct: 29 LVVDDDPDLRKLIGEFLSAHGYQVDMAENVAEMRSVMAQRRPDLIVLDVM--MPGEDGLS 86 Query: 63 LPRIIRAHSQVP-LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 R + + P +I +S + + + G DD + KP + RE+LARV A+ RR + Sbjct: 87 AARALASERGSPAVIMLSALGNDTDRIIGLEVGADDYLAKPCNPRELLARVRALLRRSQS 146 Query: 122 SNNRAETGPIRVFSDGRD--------PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 SN +++ G + G L E +L + + + +++ Q+ Sbjct: 147 SNEQSDQRGNVYEFAGWRLDVVRRDLRDPTGIFINLSDGEFALLRTFVEHPQRVLSRDQL 206 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G D V + ++S IS+LR+K+ ++ + + + R GY + Sbjct: 207 LDCARGR-DTDVYDRAIDSQISRLRRKINERVHTELIRTVRNEGYML 252 >gi|121594708|ref|YP_986604.1| two component transcriptional regulator [Acidovorax sp. JS42] gi|120606788|gb|ABM42528.1| two component transcriptional regulator, winged helix family [Acidovorax sp. JS42] Length = 235 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 46/223 (20%), Positives = 94/223 (42%), Gaps = 10/223 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + + + +G E + + DV ++ L G+ L+ Sbjct: 8 LIVEDESPIAELVAVNLRHNGFQPIWAEDGESAQRELDAVLPDVILLDWML--PGQSGLQ 65 Query: 63 LPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYR 117 L R RA S Q+P++ ++ + D+G DD + KP +E+ R R Sbjct: 66 LARKWRADSRTKQIPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIRAVLRRR 125 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + ++ G + + + QG+ + E ++L YLM + + ++ Q+ I Sbjct: 126 APEQVSDSVSIGELVLDAATHRVSYQGQQLKVGPTEFKLLHYLMKHPERVHSRAQLLDKI 185 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G +EE V+ H+ +LR+ L V++ R GY + Sbjct: 186 WGDH-VFIEERTVDVHVKRLREALGVGGA--MVETVRGAGYRL 225 >gi|150388841|ref|YP_001318890.1| two component transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149948703|gb|ABR47231.1| two component transcriptional regulator, winged helix family [Alkaliphilus metalliredigens QYMF] Length = 231 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 47/226 (20%), Positives = 91/226 (40%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + L S+ + D+ AI L L Sbjct: 6 ILVVEDDPTTQRLIRHTLEQHQFQVLSAEDGAMTLDLLSNHK-DIDAIILDLFLPDCNGL 64 Query: 62 ELPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 EL + +R+HS P++ ++ + + G DD + KP H RE++AR+ RR Sbjct: 65 ELLKTVRSHSIHSDIPVVILTSNDDKLDLVIALEMGADDYITKPFHKRELIARINVCLRR 124 Query: 119 LKVSNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + T R+ + + L E +L + + GK ++ + Sbjct: 125 AQNTIRSHNTSRSISGITLDITTREVKKDDGLISLTFAEFELLLLFVTHPGKVFSRDDLL 184 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + ++G E V++ HIS LRKKL + +++ R +GY + Sbjct: 185 TKLWGES-FVSETRVIDMHISSLRKKL-DDSDNQLIETIRGVGYRL 228 >gi|298241030|ref|ZP_06964837.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297554084|gb|EFH87948.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 226 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 36/220 (16%), Positives = 80/220 (36%), Gaps = 5/220 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++I+D A +++ + D G + L + D++ I+ L L Sbjct: 4 LVIEDEAPIREFEVTYLRDAGYGTIEAADGQAAVELFVEHKPDLAIIDINL--PKMSGLN 61 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + IR S +P++ ++ S + + G DD K + +L R Sbjct: 62 VCKAIRTTSTMPILIVTARDSDEDEVKGLSMGADDY-IKKPFNPNVLVARVQALLRRHDR 120 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY-GLF 181 R + + + G L +L L ++ +++ Q+ + IY Sbjct: 121 TRRRHFKGLVIDPETMSVMKGGTSITLTTTRFNLLLALASHPRAVLSRAQLVNQIYSDPS 180 Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 V + +++HI LR+ + + +++ GY Sbjct: 181 SHFVYDRTIDAHIKALRQSIETDPKNPQFIETVFGSGYRF 220 >gi|296118918|ref|ZP_06837491.1| DNA-binding response regulator PhoP [Corynebacterium ammoniagenes DSM 20306] gi|295968016|gb|EFG81268.1| DNA-binding response regulator PhoP [Corynebacterium ammoniagenes DSM 20306] Length = 236 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 48/224 (21%), Positives = 91/224 (40%), Gaps = 10/224 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + G ++ NS + + ++ G E Sbjct: 12 LVVDDEPNIVELLTVSLKFQGFNVRSANSGTEALRIAREINPEAYILDVM--MPGMDGFE 69 Query: 63 LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L +RA P++ ++ S+ + G DD V KP E++ R+ I RR Sbjct: 70 LLAKLRAEGLDGPVLYLTAKDSVDQRIHGLTIGADDYVTKPFSLEEVITRLRVILRRGGA 129 Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + D + GE+ L E +L +LM N+ ++K +I Sbjct: 130 GQDENSDATMSYADLTLNDDTHEVTKGGEIIDLSPTEFNLLRFLMQNKEVVLSKAKILDN 189 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +D + NVVES+IS LR+K+ + + + R +GY + Sbjct: 190 VW-HYDFGGDGNVVESYISYLRRKI-DTGDSPLIHTVRGVGYVL 231 >gi|291546162|emb|CBL19270.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus sp. SR1/5] Length = 223 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 48/220 (21%), Positives = 100/220 (45%), Gaps = 6/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ +D ++ + + +G +++G + + D+ + Sbjct: 4 ILIAEDDLELRQLFRHVLLKNGYTVKGVSDGQEALDALEKDYYDLIISDIM--MPNMDGY 61 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL R +R A +P++ ++ + F SG DD + KP++ E++ RV A+ RR + Sbjct: 62 ELVRSLRDAGDSIPVLMVTAKDAFDDMRMGFLSGSDDYMVKPVNINELVLRVGALLRRAQ 121 Query: 121 VSNNRAETGPIRVF-SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + N R + + D E LP++E +L +++ GK + Q+ I+G Sbjct: 122 MINERKQRIGDTILECDSLTVSTSSESMVLPQKEFMLLYKMVSFPGKIFTRQQLMDDIWG 181 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 +D A + + V+ HI +LR++ R+ F + + R +GY Sbjct: 182 -YDSASDAHTVDVHIGRLRERFRDNPDFK-IVTIRGVGYK 219 >gi|226228024|ref|YP_002762130.1| OmpR family two-component response regulator [Gemmatimonas aurantiaca T-27] gi|226091215|dbj|BAH39660.1| OmpR family two-component response regulator [Gemmatimonas aurantiaca T-27] Length = 226 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 45/220 (20%), Positives = 92/220 (41%), Gaps = 5/220 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L++D +++ A G +++ + + L + + DV ++ L Sbjct: 4 LLVEDDDTLRESATAFLRASGFAVDPAGTGKMARSLAAVSPYDVVVLDIRLPDD--DGFV 61 Query: 63 LPRIIRAHSQVPLI-GISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L +RA + P + + +++ + D G DD + KP E++ARV A+ RR Sbjct: 62 LCTALRARTPAPRVLMATARDAVEDRIAGLDLGADDYLVKPYALGELVARVRALMRRPDH 121 Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + R+ G V L +E +LE LM G+ + + I + Sbjct: 122 AAPTLLRVEDLVLDPATREAGRNGRVITLTTKEFAVLEVLMRAPGRVLTREFIGEHAWD- 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + NV++ +I++LR+K+ + + R GY + Sbjct: 181 DNFDPMSNVIDVYIARLRRKVDADGDVPLLSTVRGAGYRL 220 >gi|91791478|ref|YP_561129.1| response regulator receiver [Shewanella denitrificans OS217] gi|91713480|gb|ABE53406.1| two component transcriptional regulator, winged helix family [Shewanella denitrificans OS217] Length = 225 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 46/222 (20%), Positives = 97/222 (43%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D A + + F ++ + + + L D+ ++ L L Sbjct: 3 ILIIEDDATTQSYLVEGFAAQNIATDTASDGQEGLHLARHNSYDLIVLDRML--PKLDGL 60 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L +R+ P++ +S + + +G DD + KP E+L RV + +R + Sbjct: 61 TLLGALRSSGNSTPVLILSALNHVDERVKGLRAGGDDYMTKPFAFAELLVRVEKLTQRNQ 120 Query: 121 VSNNRAETGPIRVFSD--GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 AE ++ + R + L +E ++L+YLM + K +++T +F A++ Sbjct: 121 GIAAPAELVVGQLRMELLTRVVTLAEHELMLQPKEFQLLKYLMEHPNKVISRTLLFEAVW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + NV++ HI+KLR+K + +++ R GY + Sbjct: 181 D-YHFDPRTNVIDVHIAKLRRKFEEIGFPEMIETVRGAGYRL 221 >gi|319939572|ref|ZP_08013931.1| response regulator Rr1 [Streptococcus anginosus 1_2_62CV] gi|319811161|gb|EFW07467.1| response regulator Rr1 [Streptococcus anginosus 1_2_62CV] Length = 228 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 43/220 (19%), Positives = 90/220 (40%), Gaps = 6/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D A+++ + G + + + ++ L Sbjct: 4 ILLVEDDAVIRQQVKKMLEQWGFEVIAVEDFMQVLTIFVKEEPHLVLMDIGLPL--FNGY 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 + IR S+VP++ +S + + G DD V KP + +LA+V Sbjct: 62 HWCQEIRKISKVPIMFLSSRDQAMDIVMAINMGGDDFVTKPFDNNVLLAKVQGLLRRSYE 121 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + E + + D +GEV L + E +IL L + G VA+ + ++ Sbjct: 122 FGTDQSLLEYHGVILNLKSMDMVYEGEVITLTKNEFQILRVLFEHSGSIVARDDLMKELW 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 D +++N + ++++LRKKL + +++K+ +GY Sbjct: 182 -NSDFFIDDNTLSVNVARLRKKLEEAGLKNFIETKKGIGY 220 >gi|313898964|ref|ZP_07832491.1| response regulator MprA [Clostridium sp. HGF2] gi|312956163|gb|EFR37804.1| response regulator MprA [Clostridium sp. HGF2] Length = 242 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 44/221 (19%), Positives = 91/221 (41%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 + +D + + +G +++ + A D ++ Sbjct: 21 LLFAEDERDLNEIVCQKLRKEGYTVDACFDGAEALEFLAVADYDAVILDIM--MPVMDGY 78 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + + +RA ++ P++ +S S++ + DSG +D + KP E++AR+ + R K Sbjct: 79 AVLKQLRAEGRMTPVLFLSARDSIEDRVLGLDSGANDYLIKPFSFAELMARIRTMIRLSK 138 Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S + + ++ L +E +LEY++ N+ +++ I I+ Sbjct: 139 GSQTSLLQVGDLTLDTATHTVHRANKLILLSAKEYALLEYMLLNKNIVLSRETIEEHIWD 198 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 FD A N+V+ +IS LRKK+ + + R GY I Sbjct: 199 -FDYAGGTNLVDVYISYLRKKIDGASTCKLIHTVRGSGYVI 238 >gi|238927716|ref|ZP_04659476.1| response regulator [Selenomonas flueggei ATCC 43531] gi|238884432|gb|EEQ48070.1| response regulator [Selenomonas flueggei ATCC 43531] Length = 228 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 56/221 (25%), Positives = 102/221 (46%), Gaps = 7/221 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + +G + E + D+ ++ L G +E Sbjct: 8 LIVEDETRIARFLQMELEHEGFTAEIEGNGTRAYERIIQENFDIILLDVML--PGMDGIE 65 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +R S VP+I ++ +++ ++ D G DD + KP E++ARV RR +S Sbjct: 66 ICRRVRTVSNVPIIMLTARDAVEDRVEGLDIGADDYITKPFAVPELIARVRNALRRRDIS 125 Query: 123 NNRAETG----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + A + +F + +V GE L +RE +LEYL+ N+ + + QI ++ Sbjct: 126 TDDASDRLTVKNLIMFLSRYEVQVDGETVALTKREYDLLEYLLRNKRTVLTRDQILQEVW 185 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 G FD E NVV+ +I LR KL ++ + + R +GY Sbjct: 186 G-FDYTGETNVVDVYIRYLRAKLDDRFHKKYIYTVRGVGYV 225 >gi|134097593|ref|YP_001103254.1| response regulator, two-component system [Saccharopolyspora erythraea NRRL 2338] gi|133910216|emb|CAM00329.1| response regulator, two-component system [Saccharopolyspora erythraea NRRL 2338] Length = 222 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 47/219 (21%), Positives = 79/219 (36%), Gaps = 5/219 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD V+ +G+ + + L + DV ++ L G Sbjct: 1 MVVDDEPGVRSALRRGLSAEGMDVTVASDGVEALRLAGTGAFDVVVLDIML--PGLSGYR 58 Query: 63 LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-REILARVAAIYRRLK 120 + +RA P++ +S D D G D + KP + A + R Sbjct: 59 VLERLRADDVATPVLLLSAKDGEVDQADGLDLGADGYLVKPFSFLVLVAQVRALLRRGEA 118 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 G + + R+ G L RE +L L G V+K + ++G Sbjct: 119 AGRGELRVGELLIDRGSREVRWAGTEVSLSPREYGLLVALAGRSGAVVSKEDLLRTVWGE 178 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 D+ V NVVE ++ LR+KL V + R GY Sbjct: 179 -DQFVTRNVVEVYVGYLRRKLAAAGAGHLVQTVRGHGYR 216 >gi|158320237|ref|YP_001512744.1| two component transcriptional regulator [Alkaliphilus oremlandii OhILAs] gi|158140436|gb|ABW18748.1| two component transcriptional regulator, winged helix family [Alkaliphilus oremlandii OhILAs] Length = 224 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 44/223 (19%), Positives = 94/223 (42%), Gaps = 6/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D ++ A + ++ + S D+ + Sbjct: 4 ILVIEDDKNLRRLMEAFLKRENYNVLSAKDGLEALNVLDSFHVDLIISDIM--MPHMDGY 61 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-HREILARVAAIYRRL 119 E +R + P++ ++ +++ F G DD + KPI+ +L A + R Sbjct: 62 EFTEQLRKSNINVPILMVTAKETIEDKKRGFSVGTDDYMVKPINLDEMLLRVAALLRRSN 121 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 V+ +R G + + + +GE LP++E +L L+++ + + Q+ I+G Sbjct: 122 IVNEHRMVIGEVALDYNTLTVSKKGESIVLPKKEFYLLFKLLSHPKQIFTRQQLMDEIWG 181 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + D +E V+ HI +LR+K + F+ + + R LGY + Sbjct: 182 M-DAETDERTVDVHIKRLREKFGDFSEFEII-TVRGLGYKAEK 222 >gi|94984195|ref|YP_603559.1| two component transcriptional regulator [Deinococcus geothermalis DSM 11300] gi|94554476|gb|ABF44390.1| two component transcriptional regulator, winged helix family [Deinococcus geothermalis DSM 11300] Length = 222 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 49/221 (22%), Positives = 98/221 (44%), Gaps = 8/221 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + A +G + + A D++ ++ L G L Sbjct: 4 ILIVDDDPAILEILGAYLRAEGHVVLETQDGTTGRAKLAEA--DLAILDWML--PGASGL 59 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +L R R P++ ++ + L ++G DD V KP RE++ARV A+ RR + Sbjct: 60 DLARQQRRDRPDFPILLLTARGEEEDKLRGLEAGADDYVTKPFSPREVVARVRALLRRAR 119 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + ++ + G ++ R + G+ L + E +L L + G ++ ++ ++G Sbjct: 120 LQDSVSTGGL-QLDERTRTAMLDGQELLLSKLEFDLLLTLARHPGFVWSRDRLLERVWGA 178 Query: 181 FDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 D E VV+ H++ LR+KL +++ R +GY Sbjct: 179 -DFPGVERVVDVHMAALRRKLGEHPEQPRFIETVRGVGYRF 218 >gi|320324918|gb|EFW80990.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. glycinea str. B076] Length = 267 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 48/225 (21%), Positives = 92/225 (40%), Gaps = 9/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD +++ ++ G + DV ++ L GE L Sbjct: 41 LIVDDDVAIRELLCDYLTRFNINARGVTDGTQMRQALTDETFDVVVLDLML--PGEDGLS 98 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R +R+ S +P++ ++ + + G DD + KP RE++AR+ I RR++ Sbjct: 99 LCRWLRSTSDIPILMLTARCEPTDRIIGLELGADDYMAKPFEPRELVARIQTILRRVRDE 158 Query: 123 NNRAETGPIRVFSD-----GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + T + G V PL E R+L + + +++ Q+ A Sbjct: 159 RSDQRTTIRFDAWRLNSVLRQLTAADGLVVPLSNAEFRLLRVFLERPHRVLSREQLLDAA 218 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 G EA + ++ +S+LR+KL + + + R GY D Sbjct: 219 RGRSIEAFD-RSIDLLVSRLRQKLGDDPKNPQLIKTVRGEGYLFD 262 >gi|302187207|ref|ZP_07263880.1| response regulator receiver:transcriptional regulatory protein, C-terminal [Pseudomonas syringae pv. syringae 642] gi|330974381|gb|EGH74447.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 225 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 54/223 (24%), Positives = 106/223 (47%), Gaps = 5/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D AL++ + G +E + E + + D++ I+ L G L Sbjct: 3 LLVVEDEALLRHHLRTRLTEAGHVVEAVANAEEALYQVAQFNHDLAVIDLGL--PGIGGL 60 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119 +L R +R P++ ++ + Q ++ +G DD V KP E+ AR+ A + R Sbjct: 61 DLIRQLRTLGKAFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + GP+ + + + + + L E RILEYLM + + V K ++ +Y Sbjct: 121 GFIQSTITAGPLLLDLNRKHAALAEQPLALTAYEYRILEYLMLHHQQVVPKERLMEQLY- 179 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 D+ + NV+E + +LR+KL + + F P+++ R +GY + Sbjct: 180 PDDDERDPNVIEVLVGRLRRKLDSSVAFKPIETVRGMGYLFNE 222 >gi|298241004|ref|ZP_06964811.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297554058|gb|EFH87922.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 226 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 36/220 (16%), Positives = 81/220 (36%), Gaps = 5/220 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++I+D A +++ + D G + L + D++ I+ L L+ Sbjct: 4 LVIEDEAPIREFEVTYLRDAGYGTIEAADGQAAVELFEEHKPDLAIIDLNL--PKMSGLD 61 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + IR S +P++ ++ S + + G DD K + +L R Sbjct: 62 VCKAIRTTSTMPILIVTARDSDEDEVKGLSMGADDY-IKKPFNPNVLVARVQALLRRHDR 120 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY-GLF 181 R + + + G L +L L ++ +++ Q+ + IY Sbjct: 121 TRRRHFKGLVIDPETMSVMKGGTSITLTTTRFNLLLALASHPRAVLSRAQLVNQIYSDPS 180 Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 V + +++HI LR+ + + +++ GY Sbjct: 181 SHFVYDRTIDAHIKALRQSIEIDPKNPQFIETVFGSGYRF 220 >gi|227506135|ref|ZP_03936184.1| response regulator [Corynebacterium striatum ATCC 6940] gi|227197242|gb|EEI77290.1| response regulator [Corynebacterium striatum ATCC 6940] Length = 268 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 46/225 (20%), Positives = 84/225 (37%), Gaps = 10/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + G ++ DV ++ L LE Sbjct: 44 LVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDETRRFSPDVVVLDLGL--PELDGLE 101 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR S ++ ++ S + G DD + KP RE++ RV A+ RR + S Sbjct: 102 VCRRIRTFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRRPRTS 161 Query: 123 NNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + V L R E +L L G+ + + + + Sbjct: 162 TTPPQVTTPLSVGDLILDPIAHQVRVGETTVELTRTEFELLVALALRPGQVLTRHDLVTE 221 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 ++ +E +V+ HI LR+KL G +D+ R +GY + Sbjct: 222 VWDTT-WVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGYRM 265 >gi|239617803|ref|YP_002941125.1| two component transcriptional regulator, winged helix family [Kosmotoga olearia TBF 19.5.1] gi|239506634|gb|ACR80121.1| two component transcriptional regulator, winged helix family [Kosmotoga olearia TBF 19.5.1] Length = 228 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 50/222 (22%), Positives = 98/222 (44%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + +G ++ L S D ++ L G + Sbjct: 3 ILVVEDNKKLAENIKKYLELEGFIVDLAYDGNEGLDLALSYNYDCIILDIIL--PGMSGI 60 Query: 62 ELPRIIR--AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 E+ R +R SQVP++ ++ S++ ++ + G DD + KP RE++ARV A+ RR Sbjct: 61 EICRFLRDEEKSQVPILMLTALGSVENRVEGLNVGADDYMPKPFDLRELVARVRALIRRN 120 Query: 120 KVSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 +V + R+ +GE L +E +LE M N G ++ QI ++ Sbjct: 121 QVVRQETLKYGDLVMNLQTREVSCKGEPLNLSSKEFSLLELFMRNPGVVFSREQILDKLW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 N+V+ ++ LRKKL+ + +++ +GY + Sbjct: 181 -ESGFEPRSNIVDVYVLYLRKKLKPFGYDEKIETVHNIGYRL 221 >gi|148380258|ref|YP_001254799.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 3502] gi|153932647|ref|YP_001384564.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|153936330|ref|YP_001388080.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|148289742|emb|CAL83848.1| two-component response regulator [Clostridium botulinum A str. ATCC 3502] gi|152928691|gb|ABS34191.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|152932244|gb|ABS37743.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] Length = 226 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 41/223 (18%), Positives = 86/223 (38%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G + N+ + D+ ++ L L Sbjct: 4 ILIVEDEEKLSRFIELELKHEGYEIVKANNGRTGLEIAEKDEADLVLLDIML--PEINGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117 E+ R +R S +P+I ++ ++ + D+G DD + KP I + Sbjct: 62 EVLRRLRRTSDIPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKKRIV 121 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 +K + G + + L RE +L+ LM N+ + ++ + + Sbjct: 122 TVKKDEDIIRCGLLSLDKIRHKVMYDSTEIELTNREFNLLQILMENKNIVLTRSILMEKV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G +D E NV++ +I LR K+ + + + R +GY I Sbjct: 182 CG-YDYLGETNVIDVYIRFLRTKIDDAFKAKIITTVRGVGYVI 223 >gi|148240129|ref|YP_001225516.1| two-component system response regulator [Synechococcus sp. WH 7803] gi|147848668|emb|CAK24219.1| Two-component system response regulator [Synechococcus sp. WH 7803] Length = 235 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 48/224 (21%), Positives = 97/224 (43%), Gaps = 9/224 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + DG+ +G N L R D+ ++ L + Sbjct: 9 LLIVDDDPKLLQFLLEELSQDGIVCQGANCGAEALLLLRQQRFDLVVLDWNL--PDFNGI 66 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +R+ P++ ++ + L+ + D G DD + KP E+ ARV A RR + Sbjct: 67 EICRRLRSSGDTTPVLMLTAHHDLEDRVQALDLGADDYITKPFELPELHARVRAQLRRSR 126 Query: 121 VSNNRAETGP-----IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 +N A P +++ R + L +RE +L +L+ + G+ A+ I Sbjct: 127 YANPDAFAEPLTLGDLQLDLMSRKVQQGERELALSQREFDLLAFLVKHHGEVQARQHILD 186 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 +++G + N ++ ++ LR+KL + + R +G+ Sbjct: 187 SVWGAP-FVGDPNTLDVYMGYLRRKLEGPDRPRLLHTVRGVGFM 229 >gi|119509039|ref|ZP_01628190.1| two-component response regulator [Nodularia spumigena CCY9414] gi|119466205|gb|EAW47091.1| two-component response regulator [Nodularia spumigena CCY9414] Length = 226 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 41/224 (18%), Positives = 84/224 (37%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + +G + D+ ++ L G L Sbjct: 4 ILLVEDEVKLARFIELELSYEGYQVSVAYDGLTALTAARELDIDLVILDWML--PGLSGL 61 Query: 62 ELPRIIRAHSQVP---LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIY 116 E+ R +R+ L+ D S + D+G DD V KP E+ R Sbjct: 62 EICRRLRSTGDQVPVILLTAKDEVSDGHRVAGLDAGADDYVVKPFSVEELLARVRAHLRR 121 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + + + + + R+ + L +E +LEYL+ + + + + +I Sbjct: 122 NQDADAGDILQFEDLSLNRRTREVFRGQRLIDLTAKEFDLLEYLLTHPRQVITRDRILEQ 181 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +D + N++E +I LR KL + + R +GY + Sbjct: 182 VWD-YDFIGDSNIIEVYIRYLRLKLETNNEKRLIQTVRGVGYVL 224 >gi|160896539|ref|YP_001562121.1| two component heavy metal response transcriptional regulator [Delftia acidovorans SPH-1] gi|160362123|gb|ABX33736.1| two component heavy metal response transcriptional regulator, winged helix family [Delftia acidovorans SPH-1] Length = 232 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 41/225 (18%), Positives = 91/225 (40%), Gaps = 9/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++I+D + D ++G ++ + L + D+ ++ L G L Sbjct: 7 LVIEDEIKLADYLRKGLTEEGFVVDVAHDGIDGLHLATELAYDLIVLDGML--PGIDGLA 64 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------AIY 116 + +R Q P++ ++ ++ + G DD + KP E++AR+ Sbjct: 65 VLAALRQSRQTPVLMLTARGQVEDRVRGLQGGADDYLVKPFAFSELVARMHVLLRRSVGT 124 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + R G+ L +E +L L+ +G+ +++T++ S Sbjct: 125 AHPAAEATMLRMADLELDLIRRRATRAGQRLDLTAKEFNLLSLLLRRQGEVLSRTELASQ 184 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ + + E NVVE + +LR KL + + R +GY ++ Sbjct: 185 VWDM-NFDSETNVVEVAVRRLRLKLDQPFEQPLLHTVRGMGYVLE 228 >gi|284031439|ref|YP_003381370.1| winged helix family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283810732|gb|ADB32571.1| two component transcriptional regulator, winged helix family [Kribbella flavida DSM 17836] Length = 236 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 52/219 (23%), Positives = 90/219 (41%), Gaps = 5/219 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + D G ++E + E W D ++ L G Sbjct: 3 ILVVEDERRLARAIGHGLEDHGFTVELAHDGETGLWKGREQDYDAIVLDLML--PGLSGD 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +RA P++ ++ + + G DD + KP ++ ++AR+ A+ RR Sbjct: 61 EVCRQLRAAGCWTPILILTARVGAEAEAGGLNLGADDYLRKPFSYQVLIARLNALLRRTA 120 Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + R L RRE +LEYLM N G +K +I ++G Sbjct: 121 PARPVNLVVGDLVLDPARRTVRRGTTPIELTRREFSVLEYLMRNAGSTRSKAEILDHVWG 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 D E NVVE ++ LR+K+ G + + R GY Sbjct: 181 A-DFDREPNVVEVYVGYLRRKIDQPFGTGSIRTVRGHGY 218 >gi|167565733|ref|ZP_02358649.1| DNA-binding response regulator IrlR [Burkholderia oklahomensis EO147] gi|167572829|ref|ZP_02365703.1| DNA-binding response regulator IrlR [Burkholderia oklahomensis C6786] Length = 227 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 41/222 (18%), Positives = 88/222 (39%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + G + + D+ ++ L G Sbjct: 3 ILIVEDEPKTGMYLRKGLTEAGFIADWVEDGVTGLHQAETEDYDLIILDVML--PGHDGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120 + +R P++ ++ + + + G DD V KP E++ARV +I R Sbjct: 61 TVLERLRRERSTPVLFLTARDDVGDRVKGLELGADDYVVKPFDFVELVARVRSILRRGQA 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 ++ + + R QG+V L +E +L LM G+ + + I S ++ + Sbjct: 121 RESSILRVADLELDLTRRKATRQGDVVLLTAKEFALLWLLMRREGEILPRATIASQVWDM 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + + NVV++ I +LR K+ + + + R +GY ++ Sbjct: 181 -NFNSDTNVVDAAIRRLRSKIDDAYEPKLIHTVRGMGYVLEV 221 >gi|93007040|ref|YP_581477.1| two component transcriptional regulator [Psychrobacter cryohalolentis K5] gi|92394718|gb|ABE75993.1| two component transcriptional regulator, winged helix family [Psychrobacter cryohalolentis K5] Length = 234 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 35/223 (15%), Positives = 89/223 (39%), Gaps = 5/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGK--GEK 59 ++++D +++ + G + R + ++ L G G Sbjct: 6 ILIVEDEDAIREMVVMTLEMAGFDSLQAADVSEAHQQVVDHRPALILLDWMLPGDKSGID 65 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYR 117 + + +++P+I ++ + + D+G DD + KP RE+++R+ A Sbjct: 66 FCRMLKSDTLLAEIPVIMLTAKSEEDSKVHGLDAGADDYMTKPFSTRELISRIKAVLRRS 125 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + G + + + + V ++ + E R+L + M++ + + Q+ + Sbjct: 126 NALSGDKPINIGRLTLDAKSQRFMVGDDIIDMGPTEYRLLAFFMSHPERAYTRAQLLDQV 185 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G + +E+ ++ H+ +LR LR + + R GY Sbjct: 186 WG-GNVYIEDRTIDVHVKRLRTLLRPHDCDTLIQTVRGTGYRF 227 >gi|152966980|ref|YP_001362764.1| two component transcriptional regulator, winged helix family [Kineococcus radiotolerans SRS30216] gi|151361497|gb|ABS04500.1| two component transcriptional regulator, winged helix family [Kineococcus radiotolerans SRS30216] Length = 273 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 48/223 (21%), Positives = 100/223 (44%), Gaps = 9/223 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + + +G ++ + S R D ++ L LE Sbjct: 44 LVVDDESTLSELLSMTLRYEGWEVQTAGNGLDAVRAARSFRPDAVILDIML--PDIDGLE 101 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R +RA + P++ ++ +++ + +G DD V KP E++AR+ ++ RR + Sbjct: 102 VLRRLRADATDVPVLFLTAKDAVEDRVAGLTAGGDDYVTKPFSLEEVVARLRSLLRRSGL 161 Query: 122 SNNRAETG----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + E + + D + G+ L E +L YLM N + ++K QI + Sbjct: 162 VAAKQEPVLAVGDLVLDEDSHEVTRAGQEIRLTATEFELLRYLMRNPRRVLSKAQILDRV 221 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + +D + N+VE ++S LR+K+ + + + R GY + Sbjct: 222 W-NYDFGGQANIVELYVSYLRRKI-DAGRNPMIHTVRGAGYVL 262 >gi|330876294|gb|EGH10443.1| DNA-binding response regulator PhoP [Pseudomonas syringae pv. glycinea str. race 4] Length = 225 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 53/223 (23%), Positives = 105/223 (47%), Gaps = 5/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D AL++ + G +E + E + + D++ I+ L G L Sbjct: 3 LLVVEDEALLRHHLRTRLTEAGHVVEAVANAEEALYQVTQFNHDLAVIDLGL--PGIGGL 60 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119 +L R +R + P++ ++ + Q ++ +G DD V K E+ AR+ A R Sbjct: 61 DLIRQLRTVGKAFPILILTARGNWQDKVEGLAAGADDYVVKTFQFEELEARLNAWLRRSS 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + GP+ + + + + + L E RILEYLM + + V K ++ +Y Sbjct: 121 GFIQSTIMAGPLLLDLNRKHAALAEQPLALTAYEYRILEYLMLHHQQVVPKERLMEQLY- 179 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 D+ + NV+E + +LR+KL + + F P+++ R +GY + Sbjct: 180 PDDDERDPNVIEVLVGRLRRKLDSNVAFKPIETVRGMGYLFNE 222 >gi|302380400|ref|ZP_07268869.1| response regulator receiver domain protein [Finegoldia magna ACS-171-V-Col3] gi|302311804|gb|EFK93816.1| response regulator receiver domain protein [Finegoldia magna ACS-171-V-Col3] Length = 218 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 41/220 (18%), Positives = 99/220 (45%), Gaps = 6/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++++G + G + + + +++ ++ L L Sbjct: 3 LLVVEDDQMIREGICEFLSEFGYKNYQAEDGKQAISIFENNEINLAILDIQL--PYINGL 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + IR S +P I ++ + + ++ F S D + KP + RV ++ ++ Sbjct: 61 DVLKKIRETSDIPAIMLTAFSDEEYKINAFTSLADGYIEKPFSLPVLKVRVESLIKKHYG 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 +N V ++ G+ + +E IL+Y++ N G+ + + QI +++ Sbjct: 121 NNETFNYKNTEVNFTSYTAKLNGKKVDVNAKELEILKYMIENEGQALTRMQIIDSVWKET 180 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 DE + V++ +I +LRKKL D + + R +GY ++ Sbjct: 181 DEIPFDRVIDVYIKELRKKLEL----DCIVTIRNVGYKLE 216 >gi|237735491|ref|ZP_04565972.1| two-component system transcriptional regulator [Mollicutes bacterium D7] gi|229381236|gb|EEO31327.1| two-component system transcriptional regulator [Coprobacillus sp. D7] Length = 220 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 40/221 (18%), Positives = 80/221 (36%), Gaps = 9/221 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + D G + E ++ ++ L + Sbjct: 6 ILIIEDEKNMSDLLKLELTHAGYCCDQAYDGEVGLKKALEQEYELILLDLML--PRINGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDV--VNKPIHHREILARVAAIYRRL 119 E+ R +R Q P+I ++ + ++ G DD + Sbjct: 64 EVCRRLREIKQTPVIMLTARDEVMDKVNGLQVGADDYLAKPFAMEELLARINALLRRMNF 123 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + G +++ + L E +L L+ N G V++ +I ++G Sbjct: 124 QKALLEYSYGEVKIDPSKHKVFFKDNEVNLTTTEFDLLSLLVQNGGDVVSRNKILDQVWG 183 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +DE V NVVE +I LR K+ G +++ R +GY + Sbjct: 184 -YDEDVSTNVVEVYIRYLRNKI---PGIK-IETVRGVGYRL 219 >gi|298500471|ref|ZP_07010275.1| transcriptional regulator OmpR [Vibrio cholerae MAK 757] gi|297540640|gb|EFH76697.1| transcriptional regulator OmpR [Vibrio cholerae MAK 757] Length = 241 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 43/228 (18%), Positives = 92/228 (40%), Gaps = 12/228 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD A ++ + G + + E + L + + ++ L GE L Sbjct: 8 LVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLML--PGEDGLS 65 Query: 63 LPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARVA 113 + R + +++ +P++ ++ + + G DD + KP + RE + +V Sbjct: 66 ICRRLRNSNNMIPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQVI 125 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 E G R+ R+ E PL E +L+ L+ N + +++ ++ Sbjct: 126 EAPGAPSAEETIIEFGEFRLNLGTREMFRGEEAMPLTSGEFAVLKALVTNAREPLSRDKL 185 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + G A+EE ++ IS+LR+ L + + + LGY Sbjct: 186 MNMARGREYSAMEERSIDVQISRLRRMLEVDPSKPRYIQTVWGLGYVF 233 >gi|114326810|ref|YP_743967.1| two-component response regulator [Granulibacter bethesdensis CGDNIH1] gi|114314984|gb|ABI61044.1| two-component response regulator [Granulibacter bethesdensis CGDNIH1] Length = 226 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 43/222 (19%), Positives = 93/222 (41%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D V + + G ++E ++ ++ +S D ++ L G G L Sbjct: 3 ILLVEDDKDVAGFIVKGLREAGHTVEHRDNGRDGLFMAASENFDAIVLDRMLPG-GIDGL 61 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118 L +R+ P++ +S + + +G DD ++KP E+ + Sbjct: 62 RLLETLRSQDVNTPVLFLSALSGVDERVKGLKAGGDDYLSKPFAFSELLARVEALTRRGK 121 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + + R + G+ L RE R+LE+LM + + V +T + ++ Sbjct: 122 TDAPTTKLVVADLEMDLLSRGVKRGGQKIDLQPREFRLLEFLMRHADQVVTRTMLLEGVW 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + NV++ H+S+LR+K+ + + R GY + Sbjct: 182 D-YHFDPQTNVIDVHVSRLRQKVDKPFTVSLIHTVRNAGYML 222 >gi|300788744|ref|YP_003769035.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|15011029|gb|AAK77357.1|AF331073_1 response regulator AmrC [Amycolatopsis mediterranei U32] gi|7340666|emb|CAB83036.1| putative response regulator [Amycolatopsis mediterranei] gi|299798258|gb|ADJ48633.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 224 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 43/223 (19%), Positives = 90/223 (40%), Gaps = 9/223 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + + G + + E A ++ L G Sbjct: 4 LLLVEDDEPLAEALSLALRALGHDVVHAPTGEHALTALGDAEF--VLLDVML--PGIDGF 59 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IRA S++P++ ++ + + G DD V KP R + AR+ AI RR + Sbjct: 60 EVCRRIRARSRLPIVLLTARGDPIDVVAGLECGADDYVVKPAEPRVLDARIKAIGRRAQP 119 Query: 122 SNNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + A G + + + GE L E R+L + + +++ + ++ Sbjct: 120 AVPEAGVLRVGELAIDAAAMSVTRAGEELALTATEIRLLVEFAEHPNQVLSRQVLLKRVW 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 + + +V++ +++LR K+ + + + R LGY + Sbjct: 180 D-YGYVGDSRIVDAAVARLRAKVEDDPANPVLLRTVRGLGYRL 221 >gi|159902683|ref|YP_001550027.1| two-component response regulator [Prochlorococcus marinus str. MIT 9211] gi|159887859|gb|ABX08073.1| two-component response regulator [Prochlorococcus marinus str. MIT 9211] Length = 258 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 41/229 (17%), Positives = 86/229 (37%), Gaps = 10/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +LI+D +++ G ++ + L D+ ++ L G + Sbjct: 5 ILLIEDDKDMRELVAGHLEHCGFDVQRAEDGIRGQALAMQYTPDLILLDLMLPKVDGLTL 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R + +P++ ++ L+ L F+SG DD + KP E+ RV A+ RR Sbjct: 65 CQRLRRDERTAGIPILMLTALGGLKDKLTGFNSGADDYLTKPFDLEELQVRVKALLRRTH 124 Query: 121 VSNNRAETGPIRVFS-------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + + + + + L E +L L+ G+ VA + I Sbjct: 125 RAPVGSSSHQEILNFGPLTLVPERFEVIWFERPVRLTHLEFELLHCLLQRHGQTVAPSLI 184 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 ++G ++ + + H+ LR KL + + GY ++ Sbjct: 185 LKEVWG-YEPDDDIETIRVHVRHLRTKLEPEPRKPRFIKTVYGAGYCLE 232 >gi|120555970|ref|YP_960321.1| two component transcriptional regulator [Marinobacter aquaeolei VT8] gi|120325819|gb|ABM20134.1| two component transcriptional regulator, winged helix family [Marinobacter aquaeolei VT8] Length = 223 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 51/221 (23%), Positives = 96/221 (43%), Gaps = 7/221 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D A + G D G+ +E ++L S+ R D ++ L G Sbjct: 3 ILLVEDDAALAQGLAGSLRDAGLLVEVAGEGRTADFLVSTERYDAVVLDLGLP-DGNGTQ 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120 L +P++ ++ F +G DD V KP EIL R+ A + R Sbjct: 62 WLAGWRERGIDLPVLILTARERWSDKAAGFSAGADDYVTKPFETAEILFRLRALVRRSHG 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 ++ G I + + G L +E R+L +L+ + V++T++ +Y Sbjct: 122 HAHPVITVGDIALDTHAGHVTRSGMPVSLTAQEFRLLSHLIHAAPRIVSRTELSEHVYD- 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D+ + NV++ +S+LR+KL G +++ R GY ++ Sbjct: 181 GDQEPDSNVIDVQVSRLRRKL----GAQAIETIRGQGYRMN 217 >gi|330899210|gb|EGH30629.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. japonica str. M301072PT] Length = 249 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 48/225 (21%), Positives = 93/225 (41%), Gaps = 9/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD +++ ++ G ++ DV ++ L GE L Sbjct: 23 LIVDDDVAIRELLCDYLTRFNINASGVTDGTQMRQALTAETFDVVVLDLML--PGEDGLS 80 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R +R+ S +P++ ++ + + G DD + KP RE++AR+ I RR++ Sbjct: 81 LCRWLRSTSDIPILMLTARCEPTDRIIGLELGADDYMAKPFEPRELVARIQTILRRVRDE 140 Query: 123 NNRAETGPIRVFSD-----GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + T + G V PL E R+L + + +++ Q+ A Sbjct: 141 RSDQRTTIRFDAWRLNSVLRQLTAADGLVVPLSNAEFRLLRVFLERPHRVLSREQLLDAA 200 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 G EA + ++ +S+LR+KL + + + R GY D Sbjct: 201 RGRSIEAFD-RSIDLLVSRLRQKLGDDPKNPQLIKTVRGEGYLFD 244 >gi|323359874|ref|YP_004226270.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Microbacterium testaceum StLB037] gi|323276245|dbj|BAJ76390.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Microbacterium testaceum StLB037] Length = 224 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 57/218 (26%), Positives = 98/218 (44%), Gaps = 5/218 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD ++ + +G + EG S+ R D+ ++ + G + Sbjct: 8 LVLDDDETIRLSVVTALRAEGFTAEGAPDGTDLTARLSAFRPDLVVLDWMMPGP--AGIR 65 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L +IRA +I ++ + L F G DD V KP E++AR A+ RR Sbjct: 66 LLPVIRAEGDTAVIMLTARDEVDDRLRGFAEGADDYVTKPFTVAELVARTGAVLRRRGRL 125 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 G + V D G L E R+L+ L +RG+ ++K QI + ++G D Sbjct: 126 PQTIAIGDLVVDPDAAVAHRAGGPLDLTATEFRLLQLLAESRGRTLSKGQILTQVWGYDD 185 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + N+VE H+S LR+K+ + G + + R LGY + Sbjct: 186 Y--DPNLVEVHLSALRRKMEAR-GPRLIHTVRGLGYRL 220 >gi|295398647|ref|ZP_06808671.1| response regulator [Aerococcus viridans ATCC 11563] gi|294973082|gb|EFG48885.1| response regulator [Aerococcus viridans ATCC 11563] Length = 235 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 47/226 (20%), Positives = 88/226 (38%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G E D+ ++ L + Sbjct: 9 ILIVEDEKNLARFVELELKHEGYETELAKDGRIGLEKAQEGNWDLILLDLML--PEINGI 66 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARVAA 114 E+ R +R S VP+I ++ S+ + FD G DD + KP R +L R+ Sbjct: 67 EVCRRLRPTSDVPIIIMTARDSVIDRVSGFDHGADDYIVKPFAIEELLARIRALLRRIDI 126 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + + V + R E+ L +RE +L LM N + +T++ Sbjct: 127 EEEQQHRKQTKVTFRDLSVEKENRIVRRGEEIIDLTKREYELLVMLMENVNVVLPRTELL 186 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + ++G + VE NVV+ +I LR K+ + + R GY + Sbjct: 187 NKVWG-YTTEVETNVVDVYIRYLRNKIDVDGQPGYIQTVRGTGYVM 231 >gi|218283462|ref|ZP_03489462.1| hypothetical protein EUBIFOR_02052 [Eubacterium biforme DSM 3989] gi|218215844|gb|EEC89382.1| hypothetical protein EUBIFOR_02052 [Eubacterium biforme DSM 3989] Length = 228 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 50/219 (22%), Positives = 98/219 (44%), Gaps = 3/219 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61 ++++D ++ L F + + + D++ ++ L G +L Sbjct: 5 LIVEDDENIRQLLKLTLASFNYELVDFENGKDAYDYLQDNKVDLAILDLMLPGMNGYDIL 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R + +P+I +S + D G DD + KP E+ AR+ ++ RR K Sbjct: 65 KFIRSKASLKDLPVIILSAKDKELDKIMGLDLGADDYLTKPFSVLELAARIRSLLRRSKK 124 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + + D R ++ E L +E +L+YL N G+ V++ ++ + I+G + Sbjct: 125 DERLIQIHGLCIDLDKRIVTIREEPVELTYKEFELLKYLAKNEGRAVSREELINQIWG-Y 183 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D E ++ HI+ LRKKL N+ + S R +GY + Sbjct: 184 DFIGESRTLDVHINSLRKKLGNEYAH-WIQSVRQVGYRL 221 >gi|309778203|ref|ZP_07673136.1| DNA-binding response regulator VncR [Erysipelotrichaceae bacterium 3_1_53] gi|308914037|gb|EFP59844.1| DNA-binding response regulator VncR [Erysipelotrichaceae bacterium 3_1_53] Length = 221 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 48/223 (21%), Positives = 93/223 (41%), Gaps = 10/223 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D ++ + G ++ E L + D+ ++ L Sbjct: 5 ILLVEDEEDTREAVSEFLSEAGYHVDTARDGEIAMKLLRNNIYDMVVLDIML--PKVNGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR--EILARVAAIYRRL 119 + +R HSQ+P++ ++ T L FD DD + KP R + R Sbjct: 63 VVLNWLRKHSQIPVLMLTAMHDEYTQLMSFDEQADDYIIKPFSLRLLQKRMEALFRRSRA 122 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + S N + I V +G V+ E L +E +L+ L+ + + + + QI ++ Sbjct: 123 QTSTNLWQYQDIEVDFNGFCAYVRKEPVDLKPKEILLLKLLLDHANQVLTRDQILDNLW- 181 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +EA + VV+ +I LRKKL+ D + + + +GY + Sbjct: 182 -KEEAPMDRVVDVYIKNLRKKLQL----DCIVTIKGIGYKFEE 219 >gi|320107312|ref|YP_004182902.1| winged helix family two component transcriptional regulator [Terriglobus saanensis SP1PR4] gi|319925833|gb|ADV82908.1| two component transcriptional regulator, winged helix family [Terriglobus saanensis SP1PR4] Length = 235 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 37/223 (16%), Positives = 85/223 (38%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++ +F + G + + + R ++ L Sbjct: 14 ILVVEDDPRMQKILQRVFREQGYHVTVCGDGQSGLDAFRAGRYSAVVLDLVL--PNIFGR 71 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA--AIYRR 118 ++ + I+ +P+I +S + + + G DD V KP RE++ARV R+ Sbjct: 72 DVCKTIKSEQEDMPVIVVSAITDVADKVLLLELGADDYVTKPFSPRELMARVQAAMRRRQ 131 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + G + G L E ++L+Y + + + +++ + + ++ Sbjct: 132 KTSAITTYSFGDCEIDFSKMTARRGGVSITLTAHEFKLLKYFVEHAERVLSRDVLLNEVW 191 Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 G ++ V++ I KLR+KL + + GY Sbjct: 192 G-YNSYPTTRTVDNQILKLRQKLEPESAEPRYLRTVYGAGYKF 233 >gi|307823347|ref|ZP_07653576.1| two component transcriptional regulator, winged helix family [Methylobacter tundripaludum SV96] gi|307735332|gb|EFO06180.1| two component transcriptional regulator, winged helix family [Methylobacter tundripaludum SV96] Length = 223 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 35/222 (15%), Positives = 88/222 (39%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + G ++ E L ++ D+ ++ + + Sbjct: 3 ILIVEDEKKTAAYLHKGLTEQGFIVDVGIDGEEGLLLATTIAYDLIILDVMVPLR--DGW 60 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119 + R +R Q P++ ++ ++ + + G DD + KP E+LAR+ +I R Sbjct: 61 SVLRELRRGGKQTPVLFLTARDAIDDRVKGLELGADDYLVKPFAFVELLARIRSILRRGP 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + G+ L +E +L + + +++T I ++ Sbjct: 121 ARQAEHLALADLALDPIRHKAFRNGQRLDLSPKEFALLSLFLQRPAEVLSRTLIAEQVWD 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + N+V+ I +LR+K+ + + + R +GY ++ Sbjct: 181 VH-FDSDTNIVDVAIRRLRQKIDDPFPQKLLHTVRGVGYVLE 221 >gi|300714596|ref|YP_003739399.1| two-component system response regulator [Erwinia billingiae Eb661] gi|299060432|emb|CAX57539.1| Two-component system response regulator [Erwinia billingiae Eb661] Length = 220 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 61/221 (27%), Positives = 100/221 (45%), Gaps = 9/221 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D L+ DG A G S++ F + S+A D ++ L G L Sbjct: 3 ILVIEDDRLIGDGIKAGLIKMGFSVDWFTEGKEGLAALSAAPYDAVVLDLSL--PGMDGL 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119 ++ R R Q P++ ++ +L+ + G DD + KP E+ AR+ A I RR Sbjct: 61 DILRQWRQQGQDEPVLILTARDALEQRVTGLQQGADDYLCKPFALSEVAARLQALIRRRH 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + G + + S + GE L RE +LE + N G+ + + Q+ +Y Sbjct: 121 GQLHPLLSHGAVVMESGSHRVTLNGEPLELKSRELALLELFLMNTGRVLTRAQLEEKLYS 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +DE V N VE HI LRKKL G + + +GY++ Sbjct: 181 -WDEDVSSNAVEVHIHHLRKKL----GSQFIRTIHGVGYTL 216 >gi|312197850|ref|YP_004017911.1| transcriptional regulator [Frankia sp. EuI1c] gi|311229186|gb|ADP82041.1| two component transcriptional regulator, winged helix family [Frankia sp. EuI1c] Length = 306 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 50/225 (22%), Positives = 93/225 (41%), Gaps = 11/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + D +G +E S + + D+ ++ L Sbjct: 82 LVVDDEEAITDLVAMALRYEGFEVETVRSGQAALTRVALDPPDLLVLDVMLG--DIDGFA 139 Query: 63 LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + +R A VP + ++ + Q + G DD V KP E++ARV AI RR Sbjct: 140 VCERLRGAGHGVPTLFLTARDTTQDKVRGLTLGGDDYVTKPFSVSELVARVRAILRRAGS 199 Query: 122 SNNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 R+ G + L E R+L++L+AN + + Q+ Sbjct: 200 PVTGDGHPAPLRFADLELDPRTREVRRAGRLVELTATEYRLLQFLLANARAVLTRAQLLD 259 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G D + E V+E++IS LR+K+ + + + + R +GY + Sbjct: 260 HVWG-HDFSGEGGVLETYISYLRRKV-DNVEPPLIHTVRGVGYVL 302 >gi|150378255|ref|YP_001314850.1| two component transcriptional regulator [Sinorhizobium medicae WSM419] gi|150032802|gb|ABR64917.1| two component transcriptional regulator, winged helix family [Sinorhizobium medicae WSM419] Length = 239 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 45/229 (19%), Positives = 90/229 (39%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++DD ++D G + S E + D+ ++ GE L Sbjct: 7 IAVVDDHRDIRDLVGKYLTHQGYRVSVAESGEALRRILEKGAPDLVVLDIM--MPGEDGL 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R +R +++P+I ++ + + G DD + KP + RE+LAR+ A+ RR+ Sbjct: 65 TVCRQLRTTTELPVIFLTAMADGTDRIVGLELGADDYITKPFNPRELLARIRAVLRRVNS 124 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF---------PLPRRERRILEYLMANRGKRVAKTQ 172 + + G PL E R+L + + G +++ Q Sbjct: 125 LPPQRSRIKAKTIRFDVWELDTGRRELVGRDGISVPLSTAEFRLLSAFLEHPGLVLSRDQ 184 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + G E+ + +++ +S+LRKK+ + + + GYS Sbjct: 185 LLDLTAGRAAESFD-RSIDNQVSRLRKKIESDPKNPSLIKTHWGGGYSF 232 >gi|16800610|ref|NP_470878.1| hypothetical protein lin1542 [Listeria innocua Clip11262] gi|16414015|emb|CAC96773.1| lin1542 [Listeria innocua Clip11262] gi|313618831|gb|EFR90714.1| transcriptional regulatory protein SrrA [Listeria innocua FSL S4-378] Length = 228 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 40/228 (17%), Positives = 81/228 (35%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D V + F + + + + D++ I+ L + Sbjct: 3 LLMIEDNVSVCEMIEMFFMKEEIDATFVHDGKLGYETFFKDDFDIAIIDLML--PNMDGM 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAA 114 + R IR S VP+I ++ S + + G DD V KP ++ R Sbjct: 61 TICRKIREVSDVPIIILTAKESESDQVLGLEMGADDYVTKPFSPLTLMARIKAVTRRKNN 120 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + T + L +E +L +LM + + ++ Q+ Sbjct: 121 HTTTENDEDILETTYFKISKRTREIFYQGELLDALTPKEFDLLYFLMQHPRQVFSREQLL 180 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 ++G + +E V+ HI +LR+K+ + + +GY D Sbjct: 181 EQVWG-YQFYGDERTVDVHIKRLRQKIATDTKP-FLHTVWGVGYKFDE 226 >gi|260663755|ref|ZP_05864642.1| two-component system response regulator [Lactobacillus fermentum 28-3-CHN] gi|260551704|gb|EEX24821.1| two-component system response regulator [Lactobacillus fermentum 28-3-CHN] Length = 245 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 41/227 (18%), Positives = 91/227 (40%), Gaps = 9/227 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + ++G + + ++ D+S + L+ + Sbjct: 19 ILIVDDDKEIVQLLEIYARNEGYEPVSAYNGKDAITKLNTM-PDISLVILDLMMPEMNGM 77 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R +R S +P++ +S + + +G DD V KP + E++ARV ++ RR + Sbjct: 78 DVIRQVRKDSSIPILVLSAKTADMDKIQGLVTGADDYVTKPFNPLEVMARVKSLLRRSEN 137 Query: 122 SNNRAETGPIRVFSDGRDPEVQG------EVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + V + + + L E IL L ++ + + IF Sbjct: 138 QVTNDKPDVLNVGPLVINKDSHEVKTLKGDQIQLTALEFGILYLLASHPNRVFSADDIFE 197 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 ++ + V V H+S LR K+ G +++ +GY ++ Sbjct: 198 RVW-QQESVVSAKTVMVHVSHLRDKIEVATGGEKVIETVWGVGYKVE 243 >gi|187933155|ref|YP_001884657.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Clostridium botulinum B str. Eklund 17B] gi|187721308|gb|ACD22529.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridium botulinum B str. Eklund 17B] Length = 229 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 29/226 (12%), Positives = 87/226 (38%), Gaps = 11/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D ++ + + + E D++ ++ L G Sbjct: 4 ILLVEDEESIRGFIKINLKRNDFEVIEAETGEDGLKAAEKFSIDLAVLDVML--PGIDGF 61 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH------REILARVAA 114 ++ +R + ++ +I ++ + + G DD + KP + + + R Sbjct: 62 KVCDELRKRYPKIGIIMLTARTQDMDKIMGLEYGADDYIIKPFNPLELILRIKAILRRIG 121 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 +++K N+ P + + + +E +++ + N K ++ ++ Sbjct: 122 DEKQVKEDINKLIREPFIIDLYSQKLFKNSIEIDVTPKEYLLMKLFLKNPNKAFSRDELL 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYS 219 + I+G +D + +++ +I +LR K+ + + +++ GY Sbjct: 182 NLIWG-YDYFGDPKLIDVNIRRLRAKIEDNPSEPEFIETIWGKGYR 226 >gi|119503167|ref|ZP_01625251.1| DNA-binding response regulator PhoB [marine gamma proteobacterium HTCC2080] gi|119460813|gb|EAW41904.1| DNA-binding response regulator PhoB [marine gamma proteobacterium HTCC2080] Length = 233 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 46/225 (20%), Positives = 85/225 (37%), Gaps = 10/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD ++D G +++ R D+ ++ L G +E Sbjct: 7 LIVDDELPIRDMLRMALETAGYECLEAETIDAAYHQIVDDRPDIVLLDWML--PGGSGIE 64 Query: 63 LPRIIRAHSQV---PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYR 117 L R I+ P+I ++ + + D G DD + KP RE+ + Sbjct: 65 LLRRIKRAEMTQDLPVIMLTAKAAEHNVIQGLDVGADDYITKPFALRELLARIKALLRRA 124 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + N + + D R V E L E +L + M++ + ++Q+ + Sbjct: 125 KSSDDRNLLVVRDLTIDIDSRRAFVGEEALQLGPTEFNLLLFFMSHPERAYTRSQLLDRV 184 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGF--DPVDSKRFLGYSI 220 +G + VEE V+ HI +LR L G + + R GY Sbjct: 185 WGA-NIYVEERTVDVHIRRLRAALDAAEGDYSQLIQTVRGTGYRF 228 >gi|227543690|ref|ZP_03973739.1| response regulator [Lactobacillus reuteri CF48-3A] gi|300908752|ref|ZP_07126215.1| DNA-binding response regulator [Lactobacillus reuteri SD2112] gi|77745291|gb|ABB02546.1| response regulator [Lactobacillus reuteri] gi|227186337|gb|EEI66408.1| response regulator [Lactobacillus reuteri CF48-3A] gi|300894159|gb|EFK87517.1| DNA-binding response regulator [Lactobacillus reuteri SD2112] Length = 220 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 43/221 (19%), Positives = 78/221 (35%), Gaps = 8/221 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L++D + I +G + + + ++ L L Sbjct: 1 MLVEDEESLASFLITELELEGYEVIWAKDGREVLAIFKEKEITLILLDWML--PVYDGLT 58 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRRL 119 + R I S V +I I+ D G+DD + KP E + + Sbjct: 59 VLRRIHQSSNVSIIMITARSQTSDISMALDQGLDDYITKPFEIEELLARIRVALRRLGQE 118 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 KV GP + V G+ L +E ++ L+ G + + + I+G Sbjct: 119 KVDKLDYHFGPFEINLLKHQFMVDGKQVHLTPKEFPLMATLIKEPGVVQTRDDLLNEIWG 178 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D + N V+ +I LR KL D + + R +GY + Sbjct: 179 -YDFDGQTNTVDVYIRALRNKLGKY--RDSIRTVRGIGYVL 216 >gi|15840004|ref|NP_335041.1| DNA-binding response regulator TcrA [Mycobacterium tuberculosis CDC1551] gi|13880147|gb|AAK44855.1| DNA-binding response regulator TcrA [Mycobacterium tuberculosis CDC1551] Length = 247 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 38/221 (17%), Positives = 80/221 (36%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + ++G +++ D ++ L G Sbjct: 19 ILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVML--PGIDGF 76 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ +R P++ ++ ++ + D G DD + KP + E+ AR+ A+ RR Sbjct: 77 EVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRGP 136 Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + R+ L +E +LE L+ G + Q+ + Sbjct: 137 IPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWD 196 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 N+V+ +I LR K+ G +++ R GY + Sbjct: 197 AA-YEARSNIVDVYIRYLRDKIDRPFGVTSLETIRGAGYRL 236 >gi|329940076|ref|ZP_08289358.1| putative two-component system response regulator [Streptomyces griseoaurantiacus M045] gi|329300902|gb|EGG44798.1| putative two-component system response regulator [Streptomyces griseoaurantiacus M045] Length = 238 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 53/221 (23%), Positives = 89/221 (40%), Gaps = 8/221 (3%) Query: 5 IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64 +D + DG ++ + + D+ ++ L G LE+ Sbjct: 2 AEDDEKQAELIRRYLVHDGHTVTVVHDGPTALGEATRRPPDLLILDWML--PGLDGLEIC 59 Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNN 124 R IRA P++ ++ + L D G DD + KP RE++ARV + RR + Sbjct: 60 RRIRATGDTPVLMLTARSTEDELLLGLDVGADDYMTKPFRPRELVARVRTLLRRTRQPRC 119 Query: 125 RAET----GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 E GP+ V D + V G E R+L L A + +TQ+ + Sbjct: 120 EEERLLSAGPLTVAPDRHEATVHGRPVHCTPAEFRLLSTLAAAPERVFTRTQLLHCVTD- 178 Query: 181 FDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 AV E V+ HI+ LRKK+ + + + + +GY + Sbjct: 179 HGRAVTERTVDMHIANLRKKIESSPRRPELLLTVHGVGYKL 219 >gi|281491496|ref|YP_003353476.1| Two-component response regulator [Lactococcus lactis subsp. lactis KF147] gi|281375214|gb|ADA64727.1| Two-component response regulator [Lactococcus lactis subsp. lactis KF147] Length = 228 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 44/221 (19%), Positives = 97/221 (43%), Gaps = 3/221 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + D + + + +A+ + + + L Sbjct: 6 LIVEDEPSLSDYVKKELIFEDYQVSTAFDGLSALEIFETAKPAIDVVLLDWMIPKLDGLT 65 Query: 63 LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R ++ P+I ++ + + D+G DD + KP E+LAR+ I+R+ Sbjct: 66 VLRRMKKIQADTPIIFLTARDYIGDKVAGLDAGADDYITKPFEIEELLARLRLIFRKWSN 125 Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 S+++ +V EV G+ L +RE +L Y + +RG V++ I ++G+ Sbjct: 126 SSSKVYELDYLKVDLSAHTTEVAGKTVNLTQREFSLLSYFLEHRGIVVSRADILDDVWGM 185 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D +EN V++++ LR K+ +++ R +GY ++ Sbjct: 186 -DFDGQENTVDAYVRYLRAKIDLPNHKSLIETVRGIGYRLN 225 >gi|297588498|ref|ZP_06947141.1| response regulator [Finegoldia magna ATCC 53516] gi|297573871|gb|EFH92592.1| response regulator [Finegoldia magna ATCC 53516] Length = 239 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 38/226 (16%), Positives = 90/226 (39%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + +G ++ + + ++ + ++ L Sbjct: 11 ILIVEDEKNISNAEKKYLEVEGFEVDQAFDGQEAIDMINTTDYSLIILDLML--PKVSGE 68 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118 ++ IIR+ ++ P+I ++ L+ G DD + KP + ++ +V I RR Sbjct: 69 KVMEIIRSRTETPVIMVTAKIDESEILEGLKLGADDYITKPFSLKILVQKVKTILRRVEK 128 Query: 119 ---LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 K + G + + D GE L E +I++ L +N K + +I Sbjct: 129 LGLPKSEKIYFDNGRVSISFDDNTFIKDGESINLTSNEFQIIKTLFSNPNKIFTRDEIIE 188 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 +G +D + +++HI +R K+ + + + +GY + Sbjct: 189 LSFG-YDYEAFDRAIDTHIKNIRHKIEDNPKKPRYIKTIYGVGYKL 233 >gi|291286699|ref|YP_003503515.1| two component transcriptional regulator, winged helix family [Denitrovibrio acetiphilus DSM 12809] gi|290883859|gb|ADD67559.1| two component transcriptional regulator, winged helix family [Denitrovibrio acetiphilus DSM 12809] Length = 229 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 48/224 (21%), Positives = 93/224 (41%), Gaps = 11/224 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD + + +G S++ ++ + + D+ ++ L G Sbjct: 7 ILVIDDDVELCELLSEYLEAEGFSIKAVHNGKEGASTVIDSDFDLIILDVML--PGMGGF 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + IR+ P++ ++ + + G DD + KP + RE+LAR+ AI RR Sbjct: 65 DVLKTIRSVKMTPILMLTAKGDDIDKILGLEIGADDYLPKPYNPRELLARIKAILRRYTS 124 Query: 122 SNNRAETG-----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + + + +G L E ILE L+ N G+ V + +I Sbjct: 125 PHYSEKAQELTGGNFVLDTGKLTASYRGFPLGLTVVEFNILEMLLINIGRVVTREEIALK 184 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + G + + ++ HIS +RKK D + S R GY + Sbjct: 185 VLGRELSSFD-RSIDVHISNIRKK---ASDTDIIKSIRGAGYQL 224 >gi|256376335|ref|YP_003099995.1| two component transcriptional regulator, winged helix family [Actinosynnema mirum DSM 43827] gi|255920638|gb|ACU36149.1| two component transcriptional regulator, winged helix family [Actinosynnema mirum DSM 43827] Length = 244 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 47/223 (21%), Positives = 92/223 (41%), Gaps = 7/223 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D ++ D + + L +V ++ + G LE Sbjct: 21 LVVEDTQEIRTVIEMALTDARFDVRSAGDGDTALELVRQWDPEVVLLDLNIPGP--DGLE 78 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +R S ++ ++ L +G DD + KP RE++ARV + RR ++ Sbjct: 79 VCRRLRQFSTAYVLMLTARADEVDKLVGLSAGADDYLTKPFSPRELVARVHTVLRRPRIP 138 Query: 123 NNRAETG---PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 R P+ V D R EV G + E +L + N + + Q+ +G Sbjct: 139 AARDSRRVVGPVEVDLDARSVEVNGNHVATTKIEFELLAAITENTRQVRTRDQLRRRAWG 198 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSID 221 + +++ V+ H+S LR+KL D + + R +GY ++ Sbjct: 199 E-EWLADDHAVDVHVSNLRRKLVAAGAPRDFIATVRGVGYRVN 240 >gi|224368156|ref|YP_002602319.1| transcriptional regulatory protein [Desulfobacterium autotrophicum HRM2] gi|223690872|gb|ACN14155.1| transcriptional regulatory protein [Desulfobacterium autotrophicum HRM2] Length = 232 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 50/224 (22%), Positives = 94/224 (41%), Gaps = 6/224 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + D +E + E D+ ++ L L Sbjct: 8 ILIVDDDSELLDHLRRALERKHYRIETAENGEKALDKIFEITYDLILLDIMLPL--MDGL 65 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + + +R P++ ++ ++ + D G DD + KP E++AR+ A+ RR Sbjct: 66 SVLKHMRQAGLNTPVLMLTARGDVEDRVKGLDYGADDYLAKPFSMAELMARIRALLRRDG 125 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG- 179 + GP+ + + R + L +E ILE+L+ NRG V++ + ++G Sbjct: 126 KRDTILTAGPLSLNTISRTVTLDNGPISLTSKEFSILEFLLHNRGSAVSRFNMAEHVWGN 185 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG--FDPVDSKRFLGYSID 221 FD N V+ HI LRKK+ + + R +G+ ID Sbjct: 186 EFDPFSMSNFVDVHIKNLRKKISPPGDKYPPIIRTIRGIGFIID 229 >gi|152983903|ref|YP_001348990.1| two-component response regulator KdpE [Pseudomonas aeruginosa PA7] gi|150959061|gb|ABR81086.1| two-component response regulator KdpE [Pseudomonas aeruginosa PA7] Length = 230 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 48/223 (21%), Positives = 89/223 (39%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LIDD ++ G + + E + R D+ ++ L Sbjct: 8 ILLIDDEPQIRKFLRISLTAQGYRVLEAGNGEEGLAQAALNRPDLVVLDLGL--PDRDGQ 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 ++ R +R S VP++ +S S + D G +D V KP +E LARV + Sbjct: 66 DILRDLREWSAVPVLVLSVRASEGEKVLALDGGANDYVTKPFGIQEFLARVRVLLRQAAQ 125 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + GP++V R + G L R+E +L L + G+ V + Q+ I+ Sbjct: 126 GESPEAAVTVGPLQVDLAYRRVSLAGAEVALTRKEYAVLAALARHLGRVVTQQQLLRDIW 185 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 G + + + + LR+KL + + ++ +GY + Sbjct: 186 GPTHVE-DTHYLRVVVGHLRQKLGDDPASPRFLVTEAGVGYRL 227 >gi|15607742|ref|NP_215116.1| two component DNA binding transcriptional regulatory protein TCRA [Mycobacterium tuberculosis H37Rv] gi|148660372|ref|YP_001281895.1| putative two component DNA binding transcriptional regulatory protein TcrA [Mycobacterium tuberculosis H37Ra] gi|148821804|ref|YP_001286558.1| two component system DNA binding transcriptional regulatory protein tcrA [Mycobacterium tuberculosis F11] gi|215402371|ref|ZP_03414552.1| two component system DNA binding transcriptional regulatory protein tcrA [Mycobacterium tuberculosis 02_1987] gi|215410144|ref|ZP_03418952.1| two component system DNA binding transcriptional regulatory protein tcrA [Mycobacterium tuberculosis 94_M4241A] gi|215425834|ref|ZP_03423753.1| two component system DNA binding transcriptional regulatory protein tcrA [Mycobacterium tuberculosis T92] gi|253797536|ref|YP_003030537.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis KZN 1435] gi|254230940|ref|ZP_04924267.1| two component DNA binding transcriptional regulatory protein tcrA [Mycobacterium tuberculosis C] gi|254363558|ref|ZP_04979604.1| two component DNA binding transcriptional regulatory protein tcrA [Mycobacterium tuberculosis str. Haarlem] gi|254549559|ref|ZP_05140006.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260199607|ref|ZP_05767098.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis T46] gi|260203767|ref|ZP_05771258.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis K85] gi|289441991|ref|ZP_06431735.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis T46] gi|289552854|ref|ZP_06442064.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis KZN 605] gi|289573201|ref|ZP_06453428.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis K85] gi|289744315|ref|ZP_06503693.1| two component DNA binding transcriptional regulatory protein TCRA [Mycobacterium tuberculosis 02_1987] gi|289749099|ref|ZP_06508477.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis T92] gi|294996116|ref|ZP_06801807.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis 210] gi|297633098|ref|ZP_06950878.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis KZN 4207] gi|297730076|ref|ZP_06959194.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis KZN R506] gi|298524089|ref|ZP_07011498.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|313657403|ref|ZP_07814283.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis KZN V2475] gi|81668934|sp|O07776|TCRA1_MYCTU RecName: Full=Transcriptional regulatory protein tcrA gi|288559204|sp|Q7D9K0|TCRA2_MYCTU RecName: Full=Transcriptional regulatory protein tcrA gi|2222756|emb|CAB09978.1| PROBABLE TWO COMPONENT DNA BINDING TRANSCRIPTIONAL REGULATORY PROTEIN TCRA [Mycobacterium tuberculosis H37Rv] gi|124599999|gb|EAY59009.1| two component DNA binding transcriptional regulatory protein tcrA [Mycobacterium tuberculosis C] gi|134149072|gb|EBA41117.1| two component DNA binding transcriptional regulatory protein tcrA [Mycobacterium tuberculosis str. Haarlem] gi|148504524|gb|ABQ72333.1| putative two component DNA binding transcriptional regulatory protein TcrA [Mycobacterium tuberculosis H37Ra] gi|148720331|gb|ABR04956.1| two component system DNA binding transcriptional regulatory protein tcrA [Mycobacterium tuberculosis F11] gi|253319039|gb|ACT23642.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis KZN 1435] gi|289414910|gb|EFD12150.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis T46] gi|289437486|gb|EFD19979.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis KZN 605] gi|289537632|gb|EFD42210.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis K85] gi|289684843|gb|EFD52331.1| two component DNA binding transcriptional regulatory protein TCRA [Mycobacterium tuberculosis 02_1987] gi|289689686|gb|EFD57115.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis T92] gi|298493883|gb|EFI29177.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|326902434|gb|EGE49367.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis W-148] gi|328457319|gb|AEB02742.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis KZN 4207] Length = 253 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 38/221 (17%), Positives = 80/221 (36%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + ++G +++ D ++ L G Sbjct: 25 ILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVML--PGIDGF 82 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ +R P++ ++ ++ + D G DD + KP + E+ AR+ A+ RR Sbjct: 83 EVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRGP 142 Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + R+ L +E +LE L+ G + Q+ + Sbjct: 143 IPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWD 202 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 N+V+ +I LR K+ G +++ R GY + Sbjct: 203 AA-YEARSNIVDVYIRYLRDKIDRPFGVTSLETIRGAGYRL 242 >gi|127514347|ref|YP_001095544.1| two component transcriptional regulator [Shewanella loihica PV-4] gi|126639642|gb|ABO25285.1| two component transcriptional regulator, winged helix family [Shewanella loihica PV-4] Length = 242 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 85/224 (37%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + + N+L S D+ ++ L L Sbjct: 16 ILLVEDEPDLARLIRLNLESLQHEVTQVNTLNQARQQLRSKCFDLLLLDRML--SDGDGL 73 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117 L + +R + P + I+ S + +SG DD + KP E+ ARV Sbjct: 74 TLCQQLRQEGKSLPCMMITARDSEADIVLGLESGADDYLVKPFSVLELRARVKALLRRSA 133 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + + S R+ + L RE +L YL + + ++ Q+ A+ Sbjct: 134 QQAADQYALTFDELVIDSKTREVTAANQPLALTAREFDLLYYLAQHPRQVFSRMQLLEAV 193 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 +G + A E+ V SHI++LR KL + V + +GY Sbjct: 194 WG-YSYAGYEHTVNSHINRLRAKLACCPSSNELVQTVWGVGYKF 236 >gi|330811228|ref|YP_004355690.1| response regulator, OmpR family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379336|gb|AEA70686.1| Putative response regulator, OmpR family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 225 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 60/223 (26%), Positives = 106/223 (47%), Gaps = 5/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D AL++ D G ++ + E + D++ I+ L G L Sbjct: 3 LLVVEDEALLRHHLQTRLTDSGHVVQAVANAEEALYQVREFNHDLAVIDLGL--PGISGL 60 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119 EL R +R P++ ++ + Q ++ +G DD V KP E+ AR+ A+ R Sbjct: 61 ELIRRLRSQDKTFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + GP+ + + + + E L E RILEYLM + + VAK ++ +Y Sbjct: 121 GFTQSTIVAGPLLLDLNRKQASLGEEPLALTAYEYRILEYLMRHHQQVVAKDRLMEQLY- 179 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 D+ + NV+E + +LR+KL GF P+D+ R LGY + Sbjct: 180 PDDDERDPNVIEVLVGRLRRKLEAPAGFKPIDTVRGLGYLFNE 222 >gi|319652161|ref|ZP_08006280.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2] gi|317396150|gb|EFV76869.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2] Length = 230 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 38/227 (16%), Positives = 86/227 (37%), Gaps = 10/227 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD ++D ++G+++ + + + + ++ + Sbjct: 7 LVVDDEKEIRDAIEIYLKNEGITVLKAKDGIEALEILNENQVHLIILDVM--MPKLDGIS 64 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAIY 116 IR +P+I +S + G DD V KP + E+ R + Sbjct: 65 ATYKIREKKNIPIIILSAKTEDTDKILGLQVGADDYVTKPFNPMELVARVKSQLRRYVTF 124 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + + + + ++ V GE + E +I+E LM N G+ + +I+ Sbjct: 125 GTFEGVKKVIDLNGLMLDKEAKEVSVNGEPVKMTPIEYKIVELLMTNAGRVFSINEIYER 184 Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 ++ E N V HI K+R+K+ + + +GY ++ Sbjct: 185 VWNEPYYNAE-NTVAVHIRKIREKIEIDPKNPRYLKVVWGIGYKMEK 230 >gi|307944203|ref|ZP_07659544.1| protein PetR [Roseibium sp. TrichSKD4] gi|307772549|gb|EFO31769.1| protein PetR [Roseibium sp. TrichSKD4] Length = 232 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 50/224 (22%), Positives = 93/224 (41%), Gaps = 12/224 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L+DD ++D L ++G + + + S D+ ++ GE L Sbjct: 13 LLLVDDDQRIRDLLGRLLAENGYRVTTAANAQEARTCLSGLSFDLLILDVM--MPGETGL 70 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 +L +R HS VP++ ++ + + G DD + KP +E+L R++AI RR Sbjct: 71 DLASWLRDHSDVPILMLTARSDASDRIAGLEVGADDYLAKPFEPKELLLRLSAILRRGGP 130 Query: 122 SNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + GP + + L RE++IL G V + +I Sbjct: 131 RVTHVATEIKFGPFVFNPGRGELKNGDAPIRLTDREKQILSIFAEQPGATVPRHKIV--- 187 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 D + E V+ I++LR+K+ + G + + R +GY + Sbjct: 188 --GDDSGLGERTVDVQINRLRRKIEDDPGNPVYLQTVRGIGYRL 229 >gi|297565268|ref|YP_003684240.1| winged helix family two component transcriptional regulator [Meiothermus silvanus DSM 9946] gi|296849717|gb|ADH62732.1| two component transcriptional regulator, winged helix family [Meiothermus silvanus DSM 9946] Length = 217 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 45/218 (20%), Positives = 89/218 (40%), Gaps = 5/218 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L++D + + G S E D+ ++ L E E Sbjct: 2 LLVEDDPSLSQTLLESLAAQGFKPRLATSAEAAWEALWRDPVDLIVLDVMLPEGEEAGFE 61 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L + +R I DD + KP E++AR+ A+ RR +V Sbjct: 62 LAKELREAGFHQPILFLTARESLPDRVRGLEVGDDYLAKPFALAELVARLRALARRGEVR 121 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 + GP+ V + R+ +G++ L +E ++LE + N G+ + ++ ++G Sbjct: 122 PRVVQAGPLEVALEKREVRYRGQMVRLTAKEYQVLELFVINPGRIFTREEVLERVWG-PG 180 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + N+++ ++ LRKKL + + +++ R LGY Sbjct: 181 FESDSNLIDVYVKNLRKKLYD----NVIETVRGLGYRF 214 >gi|296102314|ref|YP_003612460.1| two-component system, OmpR family, copper resistance phosphate [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295056773|gb|ADF61511.1| two-component system, OmpR family, copper resistance phosphate [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 227 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 37/224 (16%), Positives = 97/224 (43%), Gaps = 6/224 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G ++ ++ L +A D+ ++ L Sbjct: 3 ILIVEDEIKTGEYLSKGLTEAGFVVDRADNGLTGYHLAMTADYDLLILDIML--PDVNGW 60 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118 ++ R++R A +P++ +S +++ + + G DD + KP E+LARV Sbjct: 61 DIIRMLRSAGKGMPVLLLSALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGN 120 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++ ++ + + R G L +E +LE+ + ++G+ + ++ I + ++ Sbjct: 121 TVIAESQFTVADLSIDLVSRKVNRAGNRILLTSKEFSLLEFFVRHQGEVLPRSLIAAQVW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + + N ++ + +LR K+ N + + R +GY ++ Sbjct: 181 DMS-FDSDTNAIDVAVKRLRAKIDNDYEPKLIQTVRGVGYMLEV 223 >gi|291005149|ref|ZP_06563122.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 225 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 45/223 (20%), Positives = 88/223 (39%), Gaps = 11/223 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D A++++ G + + V+ ++ L + Sbjct: 7 LLLVEDDAVLREATQLALERYGYDVRTAVDGLAGWEEFQADAPQVAVLDVML--PNLDGI 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117 EL R IR S VP++ +S + ++G DD V KP I + V + R Sbjct: 65 ELCRRIRGCSHVPVLMLSARTDPLDVVQGLEAGADDYVVKPFDTSVLVARIRSVVRRLRR 124 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 ++ G + V D + G PL E R++ A G + ++ + + Sbjct: 125 EPAPASAVRTFGDLEVDLDSLEVRRAGRSVPLTPTELRLVLEFAAQPGVVLTRSALLERV 184 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + + VV+ H+ +LR K+ G + V++ R GY + Sbjct: 185 WD-YAWGGDTRVVDVHVQRLRAKI----GRERVETVRGFGYKL 222 >gi|257877232|ref|ZP_05656885.1| two-component system response regulator [Enterococcus casseliflavus EC20] gi|257811398|gb|EEV40218.1| two-component system response regulator [Enterococcus casseliflavus EC20] Length = 235 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 48/228 (21%), Positives = 88/228 (38%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWL--QSSAREDVSAIEAFLIGKGEK 59 +L++D + +G + L Q + D+ ++ L Sbjct: 5 ILLVEDEESLASFIQTELTFEGYDTVWAKDGQEALTLFNQQANAFDLILLDWMLPI--YD 62 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 + + R IR S +P++ ++ + D G+DD + KP E+ AR+ I RRL Sbjct: 63 GITVARRIRKESDIPILMMTARNQTADVVTGLDVGLDDYLTKPFEIEELFARIRVIERRL 122 Query: 120 KVSNNRAETGPI-------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + + + +V GE L +E IL LM + Sbjct: 123 QREAKQQKNQQNQLVAGELMMDIAKHLVQVAGETIELTPKEFGILYELMKEPEVVKTRDD 182 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + I+G ++ + NVV+ +I LR KL + + R LGY + Sbjct: 183 LLNEIWG-YEYDGQTNVVDVYIRTLRNKLDVCGKGKMIATVRGLGYVL 229 >gi|168178452|ref|ZP_02613116.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|182671490|gb|EDT83464.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] Length = 228 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 51/224 (22%), Positives = 98/224 (43%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D V + A +G + + S + ++ L Sbjct: 4 ILIIEDEKRVSEVLKAYLEKEGYKVYCTTKGLEGIEIFKSIDIKLIILDLML--PDISGE 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ RIIR S V + ++ +L ++ + G D+ + KP RE+ ARV A++RRL Sbjct: 62 EVCRIIRQSSDVHIFMLTAKGALNDRIEGLNIGADEYLIKPFSPRELTARVNALFRRLST 121 Query: 122 SNNRAETGPIR----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 N+ + + D R +V G+ + E IL L++N+GK +++ Q+ + I Sbjct: 122 YNSTSNLIFDDGRLGIDYDKRVVKVNGKEVSITPNEFDILYTLVSNKGKVLSREQLINKI 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 +G+ D + ++ HI +RKK+ + + +GY Sbjct: 182 FGI-DFNGYDRTIDVHIKNIRKKIEEDTKNPKYIVTVMKVGYKF 224 >gi|134291059|ref|YP_001114828.1| two component transcriptional regulator [Burkholderia vietnamiensis G4] gi|134134248|gb|ABO58573.1| two component transcriptional regulator, winged helix family [Burkholderia vietnamiensis G4] Length = 239 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 49/228 (21%), Positives = 89/228 (39%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A + D D+ + L D ++ L G L Sbjct: 7 ILIVEDDADIADVLSLHLRDERYEVVHSADGAEGLRLLEQGNWDALILDLML--PGVDGL 64 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R RA P+I S S + + G DD + KP E++ARV A+ RR+ Sbjct: 65 EICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVD 124 Query: 121 VSNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + R+ V G L RE +L + + GK ++ + Sbjct: 125 ALARDSRLDAGTLDVAGLSIDPIAREASVDGTRIDLTPREFDLLYFFARHPGKVFSRMDL 184 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 +A++G + E+ V +HI++LR K+ + + + GY + Sbjct: 185 LNAVWG-YRHEGYEHTVNTHINRLRAKIEADPAEPVRILTVWGRGYKL 231 >gi|330940340|gb|EGH43447.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 255 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 48/225 (21%), Positives = 93/225 (41%), Gaps = 9/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD +++ ++ G ++ DV ++ L GE L Sbjct: 29 LIVDDDVAIRELLCDYLTRFNINASGVTDGTQMRQALTAETFDVVVLDLML--PGEDGLS 86 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R +R+ S +P++ ++ + + G DD + KP RE++AR+ I RR++ Sbjct: 87 LCRWLRSTSDIPILMLTARCEPTDRIIGLELGADDYMAKPFEPRELVARIQTILRRVRDE 146 Query: 123 NNRAETGPIRVFSD-----GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + T + G V PL E R+L + + +++ Q+ A Sbjct: 147 RSDQRTTIRFDAWRLNSVLRQLTAADGLVVPLSNAEFRLLRVFLERPHRVLSREQLLDAA 206 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 G EA + ++ +S+LR+KL + + + R GY D Sbjct: 207 RGRSIEAFD-RSIDLLVSRLRQKLGDDPKNPQLIKTVRGEGYLFD 250 >gi|329922786|ref|ZP_08278321.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] gi|328941928|gb|EGG38212.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] Length = 230 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 47/228 (20%), Positives = 91/228 (39%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + ++G +L + + + + D+ ++ + Sbjct: 6 ILMVDDETEILKLMEIYVRNEGYTLLTASHGLEALEILKTHKVDLIILDVM--MPQMDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + IR + P+I +S + G DD V KP E++AR+ + RR K Sbjct: 64 QACMKIREENNTPIIMLSAKSQEIDKIAGLSIGADDYVTKPFSPLELVARIKSQLRRYKQ 123 Query: 122 SNNRAETGPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 NN++ + D V G L RE +L L NRG ++ +I+ Sbjct: 124 LNNQSVRDENEIQIDELILNVASHRVTVAGREIKLTPREFSLLHTLAINRGLVLSMDKIY 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 + ++ +N V HI KLR+K+ + + + + +GY I+ Sbjct: 184 TEVWNEP-FMESKNTVMVHIRKLREKIEKDPQQPEYIKTVWGIGYKIE 230 >gi|228985958|ref|ZP_04146104.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228773765|gb|EEM22185.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 215 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 37/220 (16%), Positives = 95/220 (43%), Gaps = 11/220 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++ DD + A F + + E + + D++ ++ + Sbjct: 4 LIADDEKDMLRILKAYFEKEDFEVLLAKDGEEALQIFYDEKIDLAILDWM--MPKYSGIT 61 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + I+ +S V ++ ++ + L SG D+ V KP H ++ R ++L Sbjct: 62 VCQEIKKNSSVKVLMLTAKSESEDELAALQSGADEYVKKPFHPGVLITRA----KKLIQH 117 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 ++ + +++ + + + E +++ ++++G + + ++ ++G FD Sbjct: 118 DDVIQVQDLKIDFTKNKVYKNDKELDITKTELELIKCFLSHKGMILTRKKLLDIVWG-FD 176 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 EE V++H+ +LRKK+ + + + R LGYS++ Sbjct: 177 YFGEERTVDTHVRRLRKKVGE----NIIKTHRGLGYSLEE 212 >gi|297567362|ref|YP_003686334.1| winged helix family two component transcriptional regulator [Meiothermus silvanus DSM 9946] gi|296851811|gb|ADH64826.1| two component transcriptional regulator, winged helix family [Meiothermus silvanus DSM 9946] Length = 256 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 47/236 (19%), Positives = 90/236 (38%), Gaps = 21/236 (8%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D ++ + ++G+ + E L S++ D+ ++ L L+ Sbjct: 6 LIVEDERVLAEVLADNLREEGLEVAVARDGESALQLWQSSQPDLVILDVML--PRLSGLD 63 Query: 63 LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R +R A + P++ +S + ++ G DD + KP H E+L RV + RL+ Sbjct: 64 VCRRMRTAGDRTPVLFLSAKGQPEERVEGLRVGGDDYMGKPFHLPELLLRVQNMLSRLEW 123 Query: 122 SNNRAETG----------------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRG 165 F G V PL RE IL L G Sbjct: 124 GQEAYFRRAERGVEVAPAGLSFGGHQVDFRTWNATLADGRVEPLGEREIGILRLLAERAG 183 Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + V++ +I ++G D V++ I +LRK + + + +GY Sbjct: 184 EVVSRDEILDRVWG-GDIFPSSRTVDNFIVRLRKLFEPDPAHPIYLHTVWGVGYRF 238 >gi|196233947|ref|ZP_03132784.1| two component transcriptional regulator, winged helix family [Chthoniobacter flavus Ellin428] gi|196221996|gb|EDY16529.1| two component transcriptional regulator, winged helix family [Chthoniobacter flavus Ellin428] Length = 223 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 49/225 (21%), Positives = 84/225 (37%), Gaps = 11/225 (4%) Query: 6 DDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPR 65 +D A ++ G +G + + R D+ ++ L G+ +L R Sbjct: 2 EDDAHIRLGLCDALRGEGYEVSDCRDGAQALPIIRQRRPDLVVLDIML--PGKSGFDLCR 59 Query: 66 IIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------AIYRR 118 +RA P++ +S + + G DD V KP RE+LARV Sbjct: 60 ELRAEKNCTPILMLSAKGQEVDKVVGLELGADDYVTKPFSLRELLARVQALLRRATPGAV 119 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 G + V E F L RE ++L L RG V++ I + ++ Sbjct: 120 AADVPEEISFGKVHVDCRALRGTRGKEAFELTPRELKVLAVLHRERGNAVSRETILTEVW 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDW 222 G+ D ++ + KLR+K+ + + LGY +D Sbjct: 180 GI-DYYGTTRTLDQLVVKLRQKIEATPGEPQHLLTVHGLGYRLDV 223 >gi|58581182|ref|YP_200198.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|58425776|gb|AAW74813.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae KACC10331] Length = 777 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 54/226 (23%), Positives = 81/226 (35%), Gaps = 12/226 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L++D A A DG + E L D+ ++ L +E Sbjct: 555 LLVEDDADSASILEAYLRRDGFDVAVAGDGERAIQLHRQWAPDLVLLDVML--PKLSGIE 612 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + IR S P+I ++ L G DD V KP +E++ARV A+ RR Sbjct: 613 VLSAIRRASDTPVIMVTAIGDEPEKLGALRYGADDYVVKPYSPKEVVARVHAVLRRSVAV 672 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFP--------LPRRERRILEYLMANRGKRVAKTQIF 174 E S V L E +L L+ K ++++ Sbjct: 673 RAPGEPLQHGRLSVDPAAVVASVQGENGDSVALDLTPTEFNLLALLLKTPCKAFTRSELL 732 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 A L D E VV+SHI LR+KL + + R +GY Sbjct: 733 DAC--LPDSDALERVVDSHIHNLRRKLEVHGITGVLVTVRAVGYRF 776 >gi|332525381|ref|ZP_08401542.1| two-component system response regulator [Rubrivivax benzoatilyticus JA2] gi|332108651|gb|EGJ09875.1| two-component system response regulator [Rubrivivax benzoatilyticus JA2] Length = 229 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 51/221 (23%), Positives = 94/221 (42%), Gaps = 8/221 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + D A G +++ F + + A D ++ L G + Sbjct: 7 LLIVEDDPDLGDALRAGLRQAGHAVDLFPDGQQADAALRGAPYDAVVLDLGL--PGTDGV 64 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 R R P++ ++ ++ ++ DSG DD + KPI E+ AR+ A+ RR Sbjct: 65 TWLRRWRERGLDSPVLILTARDGIEQRIEGLDSGADDYLVKPIAIAELAARLRAMARRSA 124 Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + T R + +G+ L RE +LE L+ N + ++K Q+ +Y Sbjct: 125 GRSQSVWTHGALRYDPASKQVHWRGQPVELRGRELALLEVLLMNPQRVLSKVQLQEKLYD 184 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 E N +E HI LR+K+ V + R +GY++ Sbjct: 185 WGGAEPESNALEVHIHHLRRKI----APGIVRTVRGVGYAL 221 >gi|297622472|ref|YP_003703906.1| winged helix family two component transcriptional regulator [Truepera radiovictrix DSM 17093] gi|297163652|gb|ADI13363.1| two component transcriptional regulator, winged helix family [Truepera radiovictrix DSM 17093] Length = 253 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 43/232 (18%), Positives = 79/232 (34%), Gaps = 16/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + D+G + + R D+ ++ L Sbjct: 19 ILIVEDERAIAEVVADNLRDEGYRTLVASDGPSGLERWRAERPDLVILDVML--PQLSGF 76 Query: 62 ELPR-IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +L R P++ +S + + +G DD + KP H E L RV + RR Sbjct: 77 DLCRTRRTEGDATPVLFLSAKGHPEDRVAGLRAGGDDYLPKPFHLPEFLLRVENLLRRRG 136 Query: 121 VSNNR-----------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 G F G L RE +IL+ L + RG+ V+ Sbjct: 137 WGGEHGASAAASDTALRFGGHTVDFRSWTASLADGRTELLSERELKILQLLSSRRGEVVS 196 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220 + I A++G D V++ + +LR+ + +GY Sbjct: 197 RDDILDAVWG-DDAFPSSRTVDNFVVRLRRLFEPDPARPIYFHTVWGVGYRF 247 >gi|257790923|ref|YP_003181529.1| two component transcriptional regulator, winged helix family [Eggerthella lenta DSM 2243] gi|257474820|gb|ACV55140.1| two component transcriptional regulator, winged helix family [Eggerthella lenta DSM 2243] Length = 220 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 51/219 (23%), Positives = 91/219 (41%), Gaps = 6/219 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 + +DD +++ + G DG + E L R D+ ++ G Sbjct: 4 ILAVDDDEAIRNLLGRVLGKDGHDVRCAACAEEVLAL-KLDRYDLVLLDVM--MPGTDGF 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120 EL R IR P++ ++ S + G DD + KP E+ ARVAA R + Sbjct: 61 ELCRAIRGSVDAPIVFLTARSSEDDAVYGLGLGADDYLRKPFGAAELRARVAAHLRRERR 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + G +R+ R+ V PL + E + E+L + G+ ++ QI + G Sbjct: 121 ERKHALSFGALRLDLASREAYVGEATVPLTKTEFDVCEFLARHPGQAFSRDQIVENVLG- 179 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 +D + + H++ R KL+ +P+D+ +GY Sbjct: 180 WDAESAASTISVHVANARAKLKAAGA-EPIDTVWGVGYK 217 >gi|225570047|ref|ZP_03779072.1| hypothetical protein CLOHYLEM_06143 [Clostridium hylemonae DSM 15053] gi|225161517|gb|EEG74136.1| hypothetical protein CLOHYLEM_06143 [Clostridium hylemonae DSM 15053] Length = 240 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 48/229 (20%), Positives = 84/229 (36%), Gaps = 12/229 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + L +G + + + + + + ++ L Sbjct: 13 LVVDDDKEIVRSLGKLLELEGYKVLKAFNGMEALDMLVTDKVHLIILDVM--MPELNGLS 70 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 IR + +P+I +S + G DD V KP + E++ARV + RR Sbjct: 71 ALMKIREKNNIPVIMLSAKTEESDKVIGLSMGADDYVTKPYNTAELMARVKSQLRRYFAL 130 Query: 123 NNRAETGPIRV--------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 A V + + V GE L E +ILE LM + G QI+ Sbjct: 131 GAAAWADSNAVLRTGGLVLDKNTKQVTVDGEPAQLTATEYKILELLMEHPGYVFPAEQIY 190 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 S ++ D E V HI ++R+K+ + +GY I+ Sbjct: 191 SRVW-QEDVYAGEKTVMVHIRRIREKIEITPKNPKYLKVVWGIGYKIEK 238 >gi|261408579|ref|YP_003244820.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261285042|gb|ACX67013.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] Length = 235 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 39/226 (17%), Positives = 80/226 (35%), Gaps = 10/226 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++I+D + G S + + + D ++ L +E Sbjct: 8 LIIEDERDISRIVNDYLRVQGFSSFITENARDGLQEVRNRQPDFIILDLTL--PDADGIE 65 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH------HREILARVAAIY 116 + R +R + P++ +S S + G DD + KP + R Sbjct: 66 VCRELRTLTSAPILILSARSSDTDKVLALGFGADDYMTKPFSLSELVARVQAHLRRMVDP 125 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + G + + R L +E +L +L +N + KTQ+ Sbjct: 126 KLQATTQLLLRFGTLSIDKGARKVMAGQREIALSAKEFDLLYFLASNPNQVFTKTQLLDQ 185 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSID 221 ++G + VE+N + ++ +LR+KL + + +GY D Sbjct: 186 VWG-YSAYVEDNTITVYVRRLREKLERSGIKSAYITTVWGVGYKFD 230 >gi|330811570|ref|YP_004356032.1| two-component response regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379678|gb|AEA71028.1| putative two-component response regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 227 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 46/220 (20%), Positives = 88/220 (40%), Gaps = 4/220 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++I+D D + G +++ L V ++ L G Sbjct: 4 LIIEDEEKTADYLHRGLSEQGYTVDVAPDGIEGLHLALETDYAVIVLDVML--PGLDGFG 61 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLKV 121 + R +RA Q P+I ++ ++ + G DD + KP E++AR+ A R Sbjct: 62 VLRALRARKQTPVIMLTARERVEDRIKGLRDGADDYLGKPFSFLELVARLQALTRRSGGH 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + + R G+ L +E +L L +G+ ++KT I ++ + Sbjct: 122 EPVQVSIADLWIDLISRKATRAGQRLDLTAKEFSLLSVLARRQGEILSKTAIAEMVWDI- 180 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + NVVE I +LR KL + + R +GY ++ Sbjct: 181 NFDSDANVVEVAIKRLRAKLDGPFEQKLLHTIRGMGYVLE 220 >gi|228937808|ref|ZP_04100438.1| Two-component response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228970689|ref|ZP_04131331.1| Two-component response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228977266|ref|ZP_04137662.1| Two-component response regulator [Bacillus thuringiensis Bt407] gi|228782405|gb|EEM30587.1| Two-component response regulator [Bacillus thuringiensis Bt407] gi|228788991|gb|EEM36928.1| Two-component response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228821843|gb|EEM67841.1| Two-component response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 228 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 52/222 (23%), Positives = 99/222 (44%), Gaps = 7/222 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A + + + + D+ ++ + E +L D ++ G Sbjct: 8 LLVVEDNASLLESIVQILRDE-FEVDTAINGEDGLFLALQNIYDAILLDVM--MPGMDGF 64 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118 E+ + IR + P++ ++ SL+ + D G DD + KP E+ AR+ A Sbjct: 65 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 124 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + I +F +D +V G+ L ++ +LEYL+ N GK + + QIF ++ Sbjct: 125 SLTTQQTIRYRGIELFGKDKDVQVDGQGIKLTLKQYELLEYLIQNSGKILMREQIFDRVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G FD +VE ++ LRKKL + + R +GY + Sbjct: 185 G-FDSDTTVAIVEVYVHHLRKKLEPSGYQKDIQTVRGIGYIL 225 >gi|146281292|ref|YP_001171445.1| DNA-binding response regulator [Pseudomonas stutzeri A1501] gi|145569497|gb|ABP78603.1| DNA-binding response regulator [Pseudomonas stutzeri A1501] Length = 234 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 52/223 (23%), Positives = 97/223 (43%), Gaps = 9/223 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + +G +G +++ + ++ ++ L L Sbjct: 18 ILLVEDDRALGEGIRTALKPEGYTVDWLQDGASALHALNHESFELVILDLGL--PRLDGL 75 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119 EL + +RA P++ ++ + + D+G DD + KP E+ AR+ A + R Sbjct: 76 ELLKRLRAAGNPVPVLVLTARDATSDRIAGLDAGADDYLVKPFDVAELKARLRALLRRSF 135 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 E I + + QG LPR+E +L L+A G+ + + ++ +YG Sbjct: 136 NRPEPVLEYRGILLDPVNQQVSYQGTPINLPRKEFVLLHELLAQPGRVLTRDRLQQVLYG 195 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +DE VE N +E HI LRKK + + + R +GY +D Sbjct: 196 -WDEDVESNALEVHIHHLRKKFF----PELIRTVRGVGYLVDK 233 >gi|56752230|ref|YP_172931.1| two-component response regulator [Synechococcus elongatus PCC 6301] gi|81300682|ref|YP_400890.1| two component transcriptional regulator [Synechococcus elongatus PCC 7942] gi|56687189|dbj|BAD80411.1| two-component response regulator [Synechococcus elongatus PCC 6301] gi|81169563|gb|ABB57903.1| two component transcriptional regulator, winged helix family [Synechococcus elongatus PCC 7942] Length = 226 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 51/221 (23%), Positives = 89/221 (40%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 +LI+D + +G + N+ L S + D+ ++ L G + Sbjct: 5 ILLIEDDPKLLLFVEQELSLEGYQVTVANNGLDGLSLARSIQPDLLILDWMLPTLSGVDI 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 R+ Q P+I ++ + + +SG DD V KP E+LARV A RR+ Sbjct: 65 C--LRLRSTGVQTPIILLTAKDEISDRVSGLNSGADDYVTKPFSIEELLARVKAQLRRVN 122 Query: 121 VSNNRAETGPIRVFSD-GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + L +E +LE+L+ + + V + QI ++G Sbjct: 123 PEEPDRLQFADVSLHRLTHEVYRGSQRLELTAKEFDLLEFLLRHARQVVTRDQILEQVWG 182 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D E N++E +I LR KL + + R +GY I Sbjct: 183 -YDFMGESNIIEVYIRALRLKLEASNPQRILQTVRGVGYVI 222 >gi|89894532|ref|YP_518019.1| hypothetical protein DSY1786 [Desulfitobacterium hafniense Y51] gi|219668964|ref|YP_002459399.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|89333980|dbj|BAE83575.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219539224|gb|ACL20963.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 228 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 90/228 (39%), Gaps = 10/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD + + +G ++ + + + ++ + Sbjct: 3 ILVCDDDKEIVEAIRIYLAHEGYTIHKAFNGLQALEVIEEQTVHLVIMDIM--MPQMDGI 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 IR +P+I +S + + G DD + KP + E++ARV + RR Sbjct: 61 RALMKIREERNIPVIMLSAKSEDTDKIMGLNMGADDYITKPFNPLELIARVKSQLRRYVT 120 Query: 120 ----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + N ++G + + + + V GE L + +IL+ L AN G+ + QI+ Sbjct: 121 LGSLETKTNVYQSGGLMIDDESKCVTVDGEEVKLTPVQYKILKLLTANAGRVFSIDQIYE 180 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 ++ + E N V HI K+R+K+ N + +GY I+ Sbjct: 181 NVWNEAAFSAE-NTVAVHIRKIREKIEINPKEPKYLKVVWGIGYKIEK 227 >gi|161506627|ref|YP_001573748.1| two component heavy metal response transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|189348849|ref|YP_001942044.1| OmpR family two-component system response regulator [Burkholderia multivorans ATCC 17616] gi|160346865|gb|ABX19948.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia multivorans ATCC 17616] gi|189338987|dbj|BAG48054.1| OmpR family two-component system response regulator [Burkholderia multivorans ATCC 17616] Length = 223 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 42/221 (19%), Positives = 96/221 (43%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + +++ + + +L D+ ++ L Sbjct: 3 ILIVEDEPKMASYLRKGLTEASYTVDVAENGKIGLFLALHENFDLVVLDVML--PELDGF 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + +RA Q P++ ++ +++ + + G DD ++KP + E LAR+ ++ RR Sbjct: 61 EVLKRLRAEKQTPVLMLTAREAIEDKVAGLELGADDYLHKPFAYAEFLARIRSLLRRAPR 120 Query: 122 SNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 S + + R L +E +L+ L G+ + +T I S I+ + Sbjct: 121 SIRDILLVADMEIDLLKRRVRRGDNRIDLTAQEFALLQLLAEREGEVLTRTFITSQIWDM 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + NVV++ I +LR K+ N + + R +GY ++ Sbjct: 181 -NFDSDTNVVDAAIKRLRAKVDNAYDKKLIHTIRGMGYVLE 220 >gi|110597758|ref|ZP_01386042.1| Response regulator receiver:Transcriptional regulatory protein-like [Chlorobium ferrooxidans DSM 13031] gi|110340665|gb|EAT59145.1| Response regulator receiver:Transcriptional regulatory protein-like [Chlorobium ferrooxidans DSM 13031] Length = 222 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 39/218 (17%), Positives = 95/218 (43%), Gaps = 4/218 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + ++ +++ + + + + D+ I+ + + Sbjct: 3 LLIIEDEPGIARFLKDGLEEEYFAVDLAHDGKTGLDMAMTNEYDLLIIDWMIPA--LSGI 60 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +R S VP++ ++ +L+ + D+G +D + KP E+LAR+ R Sbjct: 61 EVCRQVRKGGSTVPILFLTAKDTLEDVVFGLDAGANDYIKKPFEFEELLARIRVQLRTTN 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 G + + L +E +LEYL+ N+ + +++I ++ + Sbjct: 121 RVEESLSVGSLSINPVTHQVFSGSTELTLTPKEFALLEYLIRNKDRVCTRSRIIEHVWDI 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + +V++ +I+ LR+KL + + + + R +GY Sbjct: 181 H-FDSDTSVIDVYITFLRRKLESAGCGNIIQTIRGVGY 217 >gi|322418162|ref|YP_004197385.1| winged helix family two component transcriptional regulator [Geobacter sp. M18] gi|320124549|gb|ADW12109.1| two component transcriptional regulator, winged helix family [Geobacter sp. M18] Length = 237 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 43/225 (19%), Positives = 86/225 (38%), Gaps = 11/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD + + + +G ++ + S ++ L Sbjct: 5 ILIIDDDTGLCELLGSYLASEGYLVDAVHDGAEGVDKAVSRDYAFVVLDVML--PTLNGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-------ILARVAA 114 ++ R IR ++QVP++ ++ + + G DD + KP + RE I R A Sbjct: 63 DVLRRIRQNTQVPVLMLTARGDEIDRIVGLEMGADDYLPKPFNPRELVARLRAIQRRSDA 122 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + + G + + R L E +LE L+ G +++ + Sbjct: 123 FPAGAEPKPDLLQVGDVSLDLGARTVSCANSPVELTSLEFSVLEALVRQAGNVMSRDDLT 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218 G + + + ++ H+S LRKKL G + + S R +GY Sbjct: 183 RQALGR-EFSSFDRSIDVHVSSLRKKLGPAAGGEERIKSVRGVGY 226 >gi|167756093|ref|ZP_02428220.1| hypothetical protein CLORAM_01613 [Clostridium ramosum DSM 1402] gi|167704085|gb|EDS18664.1| hypothetical protein CLORAM_01613 [Clostridium ramosum DSM 1402] Length = 227 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 47/220 (21%), Positives = 95/220 (43%), Gaps = 6/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++D +++ +G + F++ ++ + L + Sbjct: 5 IFVVEDDENIREIINLALVSNGYEVVQFDNAIDALAEIDKKAPSLAIFDLML--PKMSGI 62 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + + IR S++P++ +S ++ DSG DD + KP E+ ARV ++ RR Sbjct: 63 DAIKEIRETDSELPILILSAKDREIDKVNGLDSGSDDYMTKPFGILELQARVRSLLRRHV 122 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 S+ V R ++ + L +E ++L YLM N+ + V + ++ + I+G Sbjct: 123 TSDIIRTKHL-TVDKQTRLVKLDDQKLELTNKEYQLLVYLMDNKHRVVEREELLNEIWG- 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D E ++ HI LR KL + G + + R +GY Sbjct: 181 YDFIGESRALDVHIRALRSKLNDD-GHKYIKTIRSVGYRF 219 >gi|317131583|ref|YP_004090897.1| two component transcriptional regulator, winged helix family [Ethanoligenens harbinense YUAN-3] gi|315469562|gb|ADU26166.1| two component transcriptional regulator, winged helix family [Ethanoligenens harbinense YUAN-3] Length = 249 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 51/223 (22%), Positives = 91/223 (40%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD + + D+G + + S + + ++ L Sbjct: 27 ILIADDDREIVEVMDDALRDEGFETVRAYNGKQVLEQLSGEKP-IDLFILDIMMPEMDGL 85 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E R IR + P++ +S + G DD V+KP E++ARV A RR Sbjct: 86 ETLRHIRERTDAPVLILSARGREIDKVIGLRVGADDYVSKPFSVDELMARVGAHLRRENK 145 Query: 122 SNNRAETGPI---RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 A I ++ EV G+ L +E +IL YL+ N G+ V++ QI++A++ Sbjct: 146 HRQSAPVTGIGALKLDPSSWTVEVDGKPVELSGKEFQILSYLLINAGQTVSREQIYAAVW 205 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + V HI LR KL + + + +GY ++ Sbjct: 206 -KDAFGGDLSTVTVHIKNLRDKLGAEG--RRIRTVWGIGYRLE 245 >gi|255324956|ref|ZP_05366064.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Corynebacterium tuberculostearicum SK141] gi|255298016|gb|EET77325.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Corynebacterium tuberculostearicum SK141] Length = 279 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 46/224 (20%), Positives = 84/224 (37%), Gaps = 10/224 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + G ++ DV ++ L LE Sbjct: 55 LVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAMDEARRFSPDVVVLDLGL--PELDGLE 112 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR S ++ ++ S + G DD + KP RE++ RV A+ RR + S Sbjct: 113 VCRRIRTFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRRPRTS 172 Query: 123 NNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + + V L R E +L L G+ + + + + Sbjct: 173 ITPPQVTTPLIVGDLILDPVAHEVRVGETTVELTRTEFELLVALALRPGQVLTRHDLVTE 232 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYS 219 ++ +E +V+ HI LR+KL G +D+ R +GY Sbjct: 233 VWDTT-WVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGYR 275 >gi|90022369|ref|YP_528196.1| response regulator receiver domain-containing protein [Saccharophagus degradans 2-40] gi|89951969|gb|ABD81984.1| response regulator receiver [Saccharophagus degradans 2-40] Length = 230 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 48/222 (21%), Positives = 85/222 (38%), Gaps = 6/222 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + S N+ + D+ ++ L G L+ Sbjct: 10 LIVEDEPDLAQLLNEYMQAAQYSTTVINNGTDANDWLQANEVDIVLLDLML--PGMSGLD 67 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRLK 120 + R IR S VP+I I+ L + G DD + KP RE+ + Sbjct: 68 ICRDIRKASDVPVIMITAKVEEIDRLIGLELGADDYICKPYSPREVVARTKAVLRRTLSD 127 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 S++ + + + + V + L + E R+ + L G+ ++ I IY Sbjct: 128 TSSSEDQNQSVVLCEERSSVIVHKQEIELTQIEYRMFKLLFEQPGRIFSRQFIMDNIYTD 187 Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 + V + V+SHI KLRKKL+ D + S GY + Sbjct: 188 Y-RVVSDRTVDSHIKKLRKKLQAAAPEQDIIRSVYGAGYKFE 228 >gi|56696508|ref|YP_166865.1| DNA-binding response regulator [Ruegeria pomeroyi DSS-3] gi|56678245|gb|AAV94911.1| DNA-binding response regulator [Ruegeria pomeroyi DSS-3] Length = 226 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 48/221 (21%), Positives = 97/221 (43%), Gaps = 6/221 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D A ++ F ++G ++E + + D ++ L G L Sbjct: 6 LIVEDDAETREFLAKGFAEEGFAVECAGDGREGLYHATDGGFDAMVLDRML--PGLDGLA 63 Query: 63 LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L + +RA P+I ++ ++ + +G DD + KP +E+LARV A+ RR + Sbjct: 64 LIKSVRAAGLNTPVIMLTAMSAVDERVKGLRAGADDYLVKPFSFQELLARVEALLRRPQD 123 Query: 122 SNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + + R G L RE +ILE+ + + + + +T + ++ Sbjct: 124 TQEATVLACRDLEMDLMRRKVTRAGREITLTPREFQILEFFLRRKNRVITRTMLLEGVWD 183 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + N+V+ HISKLR+++ + + R GY I Sbjct: 184 -YHFDPNTNIVDVHISKLRRQIDEGAEVPLITTVRGAGYMI 223 >gi|52425301|ref|YP_088438.1| OmpR protein [Mannheimia succiniciproducens MBEL55E] gi|52307353|gb|AAU37853.1| OmpR protein [Mannheimia succiniciproducens MBEL55E] Length = 226 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 57/224 (25%), Positives = 103/224 (45%), Gaps = 9/224 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D AL+ +G G S++ F + SA D ++ L G + Sbjct: 8 ILLIEDDALIGNGIKVGLTKSGFSVDWFTDGKTGLQAIKSAPYDAVVLDLTL--PGMDGM 65 Query: 62 ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119 ++ + P++ ++ +L + G DD + KP E++AR+ A I RR Sbjct: 66 DILQQWRNEKIDTPVLILTARDTLNDRVTGLQRGADDYLCKPFALAEVIARLQALIRRRY 125 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +N E ++ + R +QG+ PL RE +LE M N+ + ++++ I +Y Sbjct: 126 GQANPIVEHSLVKFDPNSRKVSLQGKDIPLTTREYNLLELFMMNKERVLSRSFIEEKLY- 184 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 +D+ V N +E HI LR+KL G + + +GY++ N Sbjct: 185 NWDDEVSSNALEVHIHNLRQKL----GKQFIRTVHGVGYALGKN 224 >gi|116620224|ref|YP_822380.1| two component transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116223386|gb|ABJ82095.1| two component transcriptional regulator, winged helix family [Candidatus Solibacter usitatus Ellin6076] Length = 231 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 42/225 (18%), Positives = 88/225 (39%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L +D + ++G ++E + D+ ++ L Sbjct: 5 ILLAEDDPGLVLTLTDRLQNEGYAVESRQDGDSALAEAMGQSYDLILLDVML--PRRSGF 62 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIY 116 ++ + +R VP++ ++ + + SG DD + KP I A + Sbjct: 63 DVCKKLRESEIGVPILMLTARGEVVDKVVGLKSGADDYLTKPFEMMELLARIEALLRRAP 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 R ++ + G I V + G+ L RE R+L YL+ + G+ V + + + Sbjct: 123 VRRSLNAGTFQLGGIAVDFRRAEVTRAGKPVTLSAREYRLLGYLIDHCGETVTREDLLTQ 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 ++G + + V+ H++ LR+KL + + R LGY + Sbjct: 183 VWG-YSATTDTRTVDVHVAWLRQKLEENPKYPRYLQTVRGLGYKL 226 >gi|323351104|ref|ZP_08086760.1| DNA-binding response regulator [Streptococcus sanguinis VMC66] gi|322122328|gb|EFX94039.1| DNA-binding response regulator [Streptococcus sanguinis VMC66] gi|324993744|gb|EGC25663.1| DNA-binding response regulator [Streptococcus sanguinis SK405] Length = 238 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 40/220 (18%), Positives = 85/220 (38%), Gaps = 6/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D +++ + G + + + ++ L Sbjct: 14 ILLVEDDPVIRQMIKKMLEQWGFQVVAVEDFMDVLTVFVREEPHLVLMDIGLPL--FNGY 71 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 + IR S VP++ +S + + G DD V KP + LA+V Sbjct: 72 HWCQEIRKISTVPIMFLSSRDQSMDIVMAINMGADDYVTKPFDNNVFLAKVQGLLRRSYE 131 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + E + + D G+V L + E +IL L + VA+ + ++ Sbjct: 132 FGNDQSLLEHQGVILNLKSTDLVFDGKVVTLTKNEFQILRVLFEHADGIVARDDLMKELW 191 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 D +++N + ++++LRKKL + +++K+ +GY Sbjct: 192 -NSDFFIDDNTLSVNVARLRKKLEEHGLKNFIETKKGIGY 230 >gi|312886562|ref|ZP_07746170.1| two component transcriptional regulator, winged helix family [Mucilaginibacter paludis DSM 18603] gi|311300965|gb|EFQ78026.1| two component transcriptional regulator, winged helix family [Mucilaginibacter paludis DSM 18603] Length = 228 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 45/224 (20%), Positives = 98/224 (43%), Gaps = 9/224 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L++D + D G + + + D+ ++ L ++ Sbjct: 4 LLVEDEPNIVSVIKRGLADFGFEISVATDGLTALQMTIDHQFDLVILDVML--PSMDGIQ 61 Query: 63 LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L + IR +P++ ++ S + + +SG DD + KP E+ R+ + RR Sbjct: 62 LCKHIRERDENIPILMLTALDSTENIVTGLNSGADDYMVKPFKMIELATRLKTLLRRAGG 121 Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 ++ + R+ +D + V+ L E R+LE+ + N+ K +++ Q+ + Sbjct: 122 NSIQQPKNIYRIADLELDADAKIASVKQVPLNLTATEYRLLEHFIKNQRKVLSRIQLLES 181 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ + D + NVV+ +I+ LRKKL +K + + +GY + Sbjct: 182 VWDI-DFNLGTNVVDVYINYLRKKLDSKNPAKYIQTVFGMGYMM 224 >gi|294630728|ref|ZP_06709288.1| DNA-binding response regulator [Streptomyces sp. e14] gi|292834061|gb|EFF92410.1| DNA-binding response regulator [Streptomyces sp. e14] Length = 237 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 41/236 (17%), Positives = 81/236 (34%), Gaps = 21/236 (8%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L +D ++ +G + D+ ++ G L+ Sbjct: 2 LLAEDDRAIRHALERALTLEGYEVIAVADGVEALAQAHRTPPDILVLDVM--MPGIDGLQ 59 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL------------ 109 + R++RA P++ ++ + D+G DD V KP E+ Sbjct: 60 VCRVLRAEGDRTPILMLTALVETADRIAGLDAGADDYVVKPFDVEEVFARLRALLRRTSP 119 Query: 110 -----ARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANR 164 R ++ + E +R+ R L R E +LE L+ N Sbjct: 120 ALAAGPAEDVPARGPQLPERQIEAAGLRMDLQARRVWRGARELELTRTEFELLELLVRNA 179 Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G + + I+ I+G +D + ++ LR+KL + + R +GY + Sbjct: 180 GIVLDHSTIYDRIWG-YDFGPGSKNLAVYVGYLRRKLDEPDAPQLIHTVRGVGYVL 234 >gi|145221487|ref|YP_001132165.1| two component transcriptional regulator [Mycobacterium gilvum PYR-GCK] gi|145213973|gb|ABP43377.1| two component transcriptional regulator, winged helix family [Mycobacterium gilvum PYR-GCK] Length = 251 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 48/230 (20%), Positives = 92/230 (40%), Gaps = 15/230 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + + + ++ + DV ++ L G LE Sbjct: 21 LVVDDELPLAEVVASYLEREQFEAVVADNGVDAIAVARDLDPDVVILDIGL--PGIDGLE 78 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +R S ++ ++ + T+ G DD + KP RE++AR+ A+ RR +V Sbjct: 79 VCRQLRTFSDAYVVMLTARDTEIDTVLGLTVGADDYITKPFSPRELVARIRAMLRRPRVL 138 Query: 123 N-----------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 G + + R+ + E L R E ILE L G +++ Sbjct: 139 QSATATAGIDVAPPRRFGALSIDVAAREVRIDDEQILLTRTEFDILEALSGRPGNVLSRR 198 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 Q+ + E++V+ HI LR+KL + + + R +GY + Sbjct: 199 QLLEIVRDGP-WVGNEHLVDVHIGHLRRKLGDDAASPRYIATVRGVGYRM 247 >gi|319648303|ref|ZP_08002520.1| sensory transduction protein yxdJ [Bacillus sp. BT1B_CT2] gi|317389938|gb|EFV70748.1| sensory transduction protein yxdJ [Bacillus sp. BT1B_CT2] Length = 257 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 44/225 (19%), Positives = 90/225 (40%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++ G + + D++ ++ L Sbjct: 32 IMIVEDSEDIRKLLRDHLEKYGYETVAATDFTSILEIFLQEKPDLALLDINLPA--YDGY 89 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115 R IR HS P+I IS + ++G DD + KP + + R A Sbjct: 90 YWCRQIRQHSTCPIIFISARSGEMDQVMAIENGGDDYIEKPFSYEVVLAKIKGQIRRAFG 149 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 +K E +++F + + + E L ++E ++LE L+ K ++ ++ Sbjct: 150 EYAVKQGEKVIEFEGVQLFVERFELHCRNEKLELSKKESKLLEVLLERGEKVTSRDRLME 209 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + D V+EN + +I+++RKKLR+ ++S R GY + Sbjct: 210 KTW-ETDTFVDENTLNVYITRIRKKLRSMDVPFSIESVRGEGYQL 253 >gi|254524291|ref|ZP_05136346.1| two component heavy metal response transcriptional regulator, winged helix family [Stenotrophomonas sp. SKA14] gi|219721882|gb|EED40407.1| two component heavy metal response transcriptional regulator, winged helix family [Stenotrophomonas sp. SKA14] Length = 229 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 49/222 (22%), Positives = 92/222 (41%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + G+ G +++ + L DV ++ L G Sbjct: 3 LLIVEDESKTAHYLRTGLGEQGWAVDLASDGVTGLHLAREFDYDVIVLDVML--PGMDGF 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120 + R +R Q P+I ++ + + G DD + KP E+LAR+ A + R + Sbjct: 61 NVLRELRRSKQTPVIMLTARDRVDDRVHGLGQGADDYLVKPFSFIELLARLQALVRRGRQ 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + G ++V R G L +E +L L RG+ ++KT I + ++ + Sbjct: 121 QEPTELQVGDLQVNLLARRAYRDGARLDLTGKEFALLALLAQRRGQILSKTVIAAQVWDI 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + NVVE I +LR KL + + R +GY ++ Sbjct: 181 -NFDSNTNVVEVAIKRLRSKLDGPYPSKLLHTVRGMGYVLEV 221 >gi|153941442|ref|YP_001391616.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|170754689|ref|YP_001781933.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] gi|152937338|gb|ABS42836.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|169119901|gb|ACA43737.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] gi|295319648|gb|ADG00026.1| DNA-binding response regulator [Clostridium botulinum F str. 230613] Length = 226 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 41/223 (18%), Positives = 86/223 (38%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G + N+ + D+ ++ L L Sbjct: 4 ILIVEDEEKLSRFIELELKHEGYEIVKANNGRTGLEIAEKGEADLVLLDIML--PEINGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117 E+ R +R S +P+I ++ ++ + D+G DD + KP I + Sbjct: 62 EVLRRLRRTSDIPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKKRIV 121 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 +K + G + + L RE +L+ LM N+ + ++ + + Sbjct: 122 TVKKDEDIIRCGLLSLDKMRHKVMYDSTEIELTNREFNLLQILMENKNIVLTRSILMEKV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G +D E NV++ +I LR K+ + + + R +GY I Sbjct: 182 CG-YDYLGETNVIDVYIRFLRTKIDDAFKVKIITTVRGVGYVI 223 >gi|145595407|ref|YP_001159704.1| response regulator receiver [Salinispora tropica CNB-440] gi|145304744|gb|ABP55326.1| response regulator receiver [Salinispora tropica CNB-440] Length = 233 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 48/227 (21%), Positives = 87/227 (38%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L +D ++ +G + D+ ++ G L Sbjct: 7 ILLAEDDPAIRRAVEQSLLLEGYHVVATGDGLEAIAAVRRDNPDLIVLDVM--MPGLDGL 64 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R++RA P++ ++ + + D+G DD + KP E+LAR+ A+ RR Sbjct: 65 TVCRVLRAQGDWTPILVLTARTQVSNRVTGLDAGADDYLVKPFEPEELLARLRALLRRAG 124 Query: 121 VSNNRAETGPI-------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 S + R+ R G L R E +LE L+ N G + +T I Sbjct: 125 PSISPDSPAGEELAAAGVRLDLAARRVWRDGAEIILSRTEFDLLELLIRNCGVVLDRTTI 184 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I+G +D + I LR+KL + + + R +GY++ Sbjct: 185 HDRIWG-YDFGTGSKNLSVFIGYLRRKLARPGAPEIIHTVRGIGYTL 230 >gi|41407093|ref|NP_959929.1| KdpE [Mycobacterium avium subsp. paratuberculosis K-10] gi|118466690|ref|YP_880417.1| KDP operon transcriptional regulator KdpE [Mycobacterium avium 104] gi|254774017|ref|ZP_05215533.1| KDP operon transcriptional regulatory protein KdpE [Mycobacterium avium subsp. avium ATCC 25291] gi|41395444|gb|AAS03312.1| KdpE [Mycobacterium avium subsp. paratuberculosis K-10] gi|118167977|gb|ABK68874.1| KDP operon transcriptional regulatory protein KdpE [Mycobacterium avium 104] Length = 226 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 44/224 (19%), Positives = 86/224 (38%), Gaps = 8/224 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++IDD + G + ++ + + DV ++ L ++ Sbjct: 5 LVIDDEPQILRALRINLSVRGYEVVTASTGAGALRAAAEHKPDVVILDLGL--PDISGID 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI----LARVAAIYRR 118 + +R P+I +S ++ D+G DD V KP E A V Sbjct: 63 VLAGLRGWLTAPVIVLSARTDSSDKVEALDAGADDYVTKPFGMDEFLARLRAAVRRNTAA 122 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++ ET V + G L E +LE L+ NRGK V + ++ ++ Sbjct: 123 SEMEQPVVETESFTVDLAAKKVTKNGSEVHLTPTEWGMLEVLVRNRGKLVGREELLKEVW 182 Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 G A E + + ++++LR+KL + + ++ +GY + Sbjct: 183 G-PAYATETHYLRVYLAQLRRKLENDPSHPKHLLTESGMGYRFE 225 >gi|330810260|ref|YP_004354722.1| Response regulator, OmpR family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327378368|gb|AEA69718.1| putative Response regulator, OmpR family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 233 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 41/226 (18%), Positives = 86/226 (38%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + + + +G + + + D+ ++ L G L Sbjct: 4 ILLVEDDTALSELIASYLERNGYQVSVLSRGDHVRERARVDPPDLVILDLML--PGLDGL 61 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAI 115 ++ R++RA S P++ ++ + + G DD V KP R + Sbjct: 62 QVCRLLRADSATLPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLLRRSS 121 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + N+R G + + R +G+ L E +L L + G+ +++ QI Sbjct: 122 LTEPQTVNDRIVMGNLCIDLSERTVTWRGQAVELSSGEYNLLVVLARHSGEVLSRDQILQ 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + G+ + + V+ ISKLR+K + + + GY Sbjct: 182 RLRGI-EFNGTDRSVDVAISKLRRKFDDNADEARKIKTVWGKGYLF 226 >gi|323484205|ref|ZP_08089574.1| hypothetical protein HMPREF9474_01325 [Clostridium symbiosum WAL-14163] gi|323692080|ref|ZP_08106327.1| signal transduction regulator [Clostridium symbiosum WAL-14673] gi|323402447|gb|EGA94776.1| hypothetical protein HMPREF9474_01325 [Clostridium symbiosum WAL-14163] gi|323503880|gb|EGB19695.1| signal transduction regulator [Clostridium symbiosum WAL-14673] Length = 240 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 46/234 (19%), Positives = 91/234 (38%), Gaps = 17/234 (7%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS----------AREDVSAIE 50 + +I+D +++ + G EGF + E S + + Sbjct: 4 LIYVIEDDENIRNLICVALENFGHRSEGFETAEEALERLGSIMKRGKEAYRELPSMFIFD 63 Query: 51 AFLI-GKGEKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL 109 L G + R + P++ ++ + D+G DD + KP E+ Sbjct: 64 WMLPGMDGMTAIGKVRELEPLKGTPVLMLTAKDRETDIVMGLDNGADDYMTKPFGILELS 123 Query: 110 ARVAA---IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166 ARV ++ + G +++ + R+ GE L +E +L YLM + + Sbjct: 124 ARVRNLLKRSGTVREESTCLAAGDVKIDKETREVVSCGEKVELTLKEFELLSYLMEHMNR 183 Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 V + ++ I+G +D E ++ HI LR+KL++ + + R +GY Sbjct: 184 VVTRDELLDNIWG-YDYDGETRTLDMHIKTLRQKLKDAGQQ--IKTVRGVGYRF 234 >gi|320094688|ref|ZP_08026444.1| DNA-binding response regulator [Actinomyces sp. oral taxon 178 str. F0338] gi|319978373|gb|EFW09960.1| DNA-binding response regulator [Actinomyces sp. oral taxon 178 str. F0338] Length = 241 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 45/224 (20%), Positives = 90/224 (40%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++D + G + + R D+ ++ L Sbjct: 17 LLVVDDEPNIRDLLASSLRFAGFDVSTAEDGSSAFHEAQAVRPDLIVLDVML--PDMDGF 74 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI---HHREILARVAAIYR 117 + R +R P++ ++ ++ + G DD V KP + + Sbjct: 75 TVTRRLRDAGLTTPVLFLTARDDMRDKIQGLTVGGDDYVTKPFGLEEVVARIRAILRRTM 134 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + G + + D + + G L E ++L YL+ N G+ V+K QI + Sbjct: 135 GGDDEDGKLRVGDLVIDEDAHEVKRAGVDIDLSPTEFKLLRYLVINAGRVVSKMQILDHV 194 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220 + +D E +VES+IS LR+KL + + + +KR +GY + Sbjct: 195 W-EYDWDGEVAIVESYISYLRRKLAVEGASGELIHTKRGVGYIL 237 >gi|291560891|emb|CBL39691.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [butyrate-producing bacterium SSC/2] Length = 224 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 35/221 (15%), Positives = 85/221 (38%), Gaps = 7/221 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + F + D+ ++ + Sbjct: 5 ILVVDDDKELVKMLCSYFNMKQYETITATDGMEALNKIK-MKPDIILLDIN--MPRMDGI 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY---RR 118 E+ R+IR+ P++ ++ ++ SG DD + KP RE+ AR+ R Sbjct: 62 EVCRLIRSKVLCPILFLTARVDEDDKINGLLSGGDDYITKPFSLRELEARIVTNIKREER 121 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + + + + G + E +I+E+L + G+ K +I++ + Sbjct: 122 HQQKTEYRFMDEMLIDYSEKIVAIAGHRMEFTKIEYQIIEFLSMHPGQVFGKERIYAQVC 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 G +D + + + ++RKK+ + + +++ +GY Sbjct: 182 G-YDAEGDSRTITELVRRIRKKIADYSEKEYIETVWGIGYR 221 >gi|317132810|ref|YP_004092124.1| two component transcriptional regulator, winged helix family [Ethanoligenens harbinense YUAN-3] gi|315470789|gb|ADU27393.1| two component transcriptional regulator, winged helix family [Ethanoligenens harbinense YUAN-3] Length = 225 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 49/222 (22%), Positives = 86/222 (38%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D + G + F ++G + D+ ++ L Sbjct: 4 ILLIEDDTDLAAGLLFTFQEEGFKTLHAACAAEARASFK-NKFDLVVLDIML--PDGNGY 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-HREILARVAAIYRRLK 120 +L + IRA S VP++ ++ T+ D G DD V KP + A + RR Sbjct: 61 DLCKEIRAFSDVPILFLTSCDDEANTITALDGGGDDYVTKPFKLDVLLSRIRAHLRRRNT 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 G +R+ + L E R+L L N G + + Q+ A++ Sbjct: 121 QPPQAPFCGGVRLDDAQGRAFAAEQDLRLTLTEYRLLSLLTRNAGLILKRGQLLDALWDG 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + V++N + HI LR+KL + + R LGY ++ Sbjct: 181 KGDFVDDNTLSVHIRHLREKLSTAGSGVSIRTVRGLGYRLEE 222 >gi|291287141|ref|YP_003503957.1| two component transcriptional regulator, winged helix family [Denitrovibrio acetiphilus DSM 12809] gi|290884301|gb|ADD68001.1| two component transcriptional regulator, winged helix family [Denitrovibrio acetiphilus DSM 12809] Length = 223 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 53/223 (23%), Positives = 104/223 (46%), Gaps = 7/223 (3%) Query: 1 MF--VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KG 57 M ++I+D ++D G + F++ + D+ ++ L G KG Sbjct: 1 MIKVLVIEDHEEIRDLISYNLGKESFETICFDNANEGLIHLENNDVDIILLDLMLPGLKG 60 Query: 58 EKVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-Y 116 + L++ R + +S VP+I IS + Q ++ + G DD + KP + ++A++ AI Sbjct: 61 MQFLQIVRNNKKYSGVPIIIISAKNTEQDIINGLEMGADDYLTKPFSIKILIAKINAILR 120 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 R + + I + ++ V GE L +E +L+ L+ + + + QI +A Sbjct: 121 RNPAIKSKVISINGINIDTNNYVVTVDGEEISLTNKEYELLQLLLKHPKRVFTRNQILNA 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 ++G ++ V V++H+S LRKKL + + S +GY Sbjct: 181 VWG-YESDVYTRTVDTHVSSLRKKLGTRGS--FIKSVPKIGYR 220 >gi|222110688|ref|YP_002552952.1| winged helix family two component heavy metal response transcriptional regulator PhoB [Acidovorax ebreus TPSY] gi|221730132|gb|ACM32952.1| two component transcriptional regulator PhoB, winged helix family [Acidovorax ebreus TPSY] Length = 235 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 46/223 (20%), Positives = 94/223 (42%), Gaps = 10/223 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + + + +G E + + DV ++ L G+ L+ Sbjct: 8 LIVEDESPIAELVAVNLRHNGFQPIWAEDGESAQRELDAVLPDVILLDWML--PGQSGLQ 65 Query: 63 LPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYR 117 L R RA S Q+P++ ++ + D+G DD + KP +E+ R R Sbjct: 66 LARKWRADSRTKQIPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIRAVLRRR 125 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + ++ G + + + QG+ + E ++L YLM + + ++ Q+ I Sbjct: 126 APEQVSDSVSIGELVLDAATYRVSYQGQQLKVGPTEFKLLHYLMKHPERVHSRAQLLDKI 185 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G +EE V+ H+ +LR+ L V++ R GY + Sbjct: 186 WGDH-VFIEERTVDVHVKRLREALGVGGA--MVETVRGAGYRL 225 >gi|78065828|ref|YP_368597.1| two component transcriptional regulator [Burkholderia sp. 383] gi|77966573|gb|ABB07953.1| two component transcriptional regulator, winged helix family [Burkholderia sp. 383] Length = 252 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 48/230 (20%), Positives = 89/230 (38%), Gaps = 12/230 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + ++ D G++ + D+ ++ L L Sbjct: 23 ILVVDDDSQIRSLLCDCLADFGMTTAQAGTGAEMHLALGEGGFDLVVLDLMLPDD--DGL 80 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R IRA S++PLI ++ + + + G DD + KP RE++AR+ I RR++ Sbjct: 81 NLCREIRATSEIPLIILTARGEMTDRIVGLELGADDYIVKPFEPRELVARIQTILRRVRA 140 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEV--------FPLPRRERRILEYLMANRGKRVAKTQI 173 G G PL E R+L +A G+ +++ + Sbjct: 141 QTQGRTRAQEESRFAGWRLHQIGRHLIAADNTVIPLSNAEFRLLNAFLAAPGRVLSREYL 200 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDW 222 G + ++ IS+LR+KL + + + R GY +D Sbjct: 201 MDTARGKS-IDTFDRSIDVQISRLRQKLREDIKEPRLIRTIRGEGYMLDV 249 >gi|66044378|ref|YP_234219.1| heavy metal response regulator [Pseudomonas syringae pv. syringae B728a] gi|63255085|gb|AAY36181.1| Heavy metal response regulator [Pseudomonas syringae pv. syringae B728a] gi|330969196|gb|EGH69262.1| heavy metal response regulator [Pseudomonas syringae pv. aceris str. M302273PT] Length = 225 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 45/220 (20%), Positives = 85/220 (38%), Gaps = 4/220 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++I+D D + G +++ L + ++ L G Sbjct: 4 LIIEDEEKTADYLRRGLTEQGYAVDVARDGIEGLHLALENDHAIVILDVML--PGLDGFG 61 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLKV 121 + R +RA Q P+I ++ + + G DD + KP E++AR+ A R Sbjct: 62 VLRALRARKQTPVIMLTAREQIDDRIRGLREGADDYLGKPFSFLELVARLQALTRRSGGH 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + + R G L +E +L L +G ++KT I ++ + Sbjct: 122 EPIQITIADLWIDLISRKATRAGLRLDLTAKEFSLLSVLARRQGDILSKTSIAEMVWDI- 180 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + NVVE I +LR KL + + R +GY ++ Sbjct: 181 NFDSDTNVVEVAIKRLRAKLDGPHEHKLLHTIRGMGYVLE 220 >gi|226943977|ref|YP_002799050.1| Response regulator, two-component [Azotobacter vinelandii DJ] gi|226718904|gb|ACO78075.1| Response regulator, two-component [Azotobacter vinelandii DJ] Length = 219 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 50/223 (22%), Positives = 97/223 (43%), Gaps = 9/223 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D A + +G +G +++ D+ ++ L L Sbjct: 3 ILLVEDDAALGEGIRTALKPEGYTVDWLQDGASALHALGCESFDLCVLDLGL--PRLDGL 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119 ++ R +RA P++ ++ + + D+G DD + KP E+ AR+ A + R Sbjct: 61 DVLRRLRAAGNPLPVLVLTARDATSERIAGLDAGADDYLVKPFDVAELKARLRALLRRSF 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 E I++ + QG L R+E +L L+A G+ + + ++ A+YG Sbjct: 121 NRPQPALEYRGIQLDPQSQAVSYQGRDITLARKEFLLLHELLAQPGRVLTRDRLQQALYG 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + E VE N +E H+ LR+K + + + R +GY +D Sbjct: 181 -WSEEVESNALEVHVHHLRRK----FFPELIRTVRGVGYMVDK 218 >gi|258544229|ref|ZP_05704463.1| transcriptional regulator FeuP [Cardiobacterium hominis ATCC 15826] gi|258520543|gb|EEV89402.1| transcriptional regulator FeuP [Cardiobacterium hominis ATCC 15826] Length = 225 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 46/221 (20%), Positives = 90/221 (40%), Gaps = 9/221 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + + G+ E + +L S+ D + ++ L G + Sbjct: 3 ILIVEDDRELAQSLANVLQEAGMIAETAHDGNEAAFLGSTETYDAAVLDLGL--PGMDGI 60 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-HHREILARVAAIYRRL 119 L R Q P++ ++ L F++G DD + KP H +L A + R Sbjct: 61 SLLTHWREQGQTYPVLILTGRSRWSDKLAGFNAGADDYLTKPFLHEEVVLRLRALLRRSR 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++ G + + + G L +E RIL YLM G V++ +I +Y Sbjct: 121 GHADTTLHVGSLSYDTLQARFHLDGRRLTLTAQEERILAYLMHQPGTVVSRGEILEHVY- 179 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D + N ++ IS++R+KL + + R G+ + Sbjct: 180 ARDSDPDSNTLDVLISRIRRKLGVP----LLHTIRGRGFML 216 >gi|229016961|ref|ZP_04173882.1| Two-component response regulator [Bacillus cereus AH1273] gi|229027724|ref|ZP_04183908.1| Two-component response regulator [Bacillus cereus AH1272] gi|229035338|ref|ZP_04189244.1| Two-component response regulator [Bacillus cereus AH1271] gi|229160663|ref|ZP_04288656.1| Two-component response regulator [Bacillus cereus R309803] gi|228622798|gb|EEK79631.1| Two-component response regulator [Bacillus cereus R309803] gi|228727951|gb|EEL79021.1| Two-component response regulator [Bacillus cereus AH1271] gi|228733586|gb|EEL84386.1| Two-component response regulator [Bacillus cereus AH1272] gi|228744321|gb|EEL94402.1| Two-component response regulator [Bacillus cereus AH1273] Length = 230 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 43/223 (19%), Positives = 90/223 (40%), Gaps = 6/223 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D ++++ F DG + + L + ++S + ++ Sbjct: 9 LIVEDEQIIRETVAHYFSHDGYEVITAEDGQIGLDLFAEQEHNISLVILDIMLPLMDGWS 68 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRRL 119 + R IR +S VP+I ++ TL F+ G DD V KP R+ + Sbjct: 69 VCRRIRKNSNVPIILLTARSDEDDTLLGFELGADDYVTKPFKPSILLARAKRLFKDTNQQ 128 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + IR+ R + G+ E IL LM ++ + +++ Q+ + I+G Sbjct: 129 VQYQDCINLCGIRLDKSARSVSIDGQKIDFTHTEYEILHSLMQHKEQVLSREQLITNIWG 188 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D ++ + +H+ +R KL K + + GY + Sbjct: 189 -YDYDGDDKTLTAHMRNVRLKLGEK--AKHIITVVRTGYKFEV 228 >gi|319898247|ref|YP_004158340.1| transcriptional regulator BatR [Bartonella clarridgeiae 73] gi|319402211|emb|CBI75742.1| transcriptional regulator BatR [Bartonella clarridgeiae 73] Length = 240 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 47/230 (20%), Positives = 86/230 (37%), Gaps = 14/230 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 VL+DD + + +G +E + + ++ + + Sbjct: 11 IVLVDDDSNILTSLSFALETEGYRVESYTDGSAALKNLTVNPPHLAIFDI--KMPRMDGM 68 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL R +R S +P+I ++ L G DD + KP R ++ RV A+ RR Sbjct: 69 ELLRRLRQKSDIPVIFLTSKDDEIDELFGLKMGADDFITKPFSQRLLIERVKAVLRRSNA 128 Query: 122 SNNRAETGPIR----------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 N TG + + + + L E IL+ L G ++ Sbjct: 129 RNQPLPTGATPASSLRRGDLVMDQERHICTWKNKPVILTVTEFLILQTLAQRPGVVKSRD 188 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + A+Y V++ ++SHI +LRKK + F +++ +GY Sbjct: 189 ALMDAVY-NDQIYVDDRTIDSHIKRLRKKFKQVDNDFAMIETLYGVGYRF 237 >gi|189348733|ref|YP_001941929.1| OmpR family two-component system response regulator [Burkholderia multivorans ATCC 17616] gi|221215703|ref|ZP_03588664.1| transcriptional regulatory protein ResD [Burkholderia multivorans CGD1] gi|189338871|dbj|BAG47939.1| OmpR family two-component system response regulator [Burkholderia multivorans ATCC 17616] gi|221164405|gb|EED96890.1| transcriptional regulatory protein ResD [Burkholderia multivorans CGD1] Length = 239 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 49/228 (21%), Positives = 89/228 (39%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A + D D+ + L D ++ L G L Sbjct: 7 ILIVEDDADIADVLSLHLRDERYEVVHSADGAQGLRLLEQGGWDALILDLML--PGVDGL 64 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R RA P+I S S + + G DD + KP E++ARV A+ RR+ Sbjct: 65 EICRRARAMARYTPIIITSARSSEVHRILGLEIGADDYLAKPFSVLELVARVKALLRRVD 124 Query: 121 VSNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + R+ V G L RE +L + + GK ++ + Sbjct: 125 ALARDSRIDAGTLDVAGLSIDPIAREASVDGTRIDLTPREFDLLYFFARHPGKVFSRMDL 184 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 +A++G + E+ V +HI++LR K+ + + + GY + Sbjct: 185 LNAVWG-YQHEGYEHTVNTHINRLRAKIEADPAEPVRILTVWGRGYKL 231 >gi|17987612|ref|NP_540246.1| two component response regulator [Brucella melitensis bv. 1 str. 16M] gi|225852137|ref|YP_002732370.1| transcriptional activator protein copR [Brucella melitensis ATCC 23457] gi|256044314|ref|ZP_05447218.1| Transcriptional activator protein copR [Brucella melitensis bv. 1 str. Rev.1] gi|256113151|ref|ZP_05454028.1| Transcriptional activator protein copR [Brucella melitensis bv. 3 str. Ether] gi|256264351|ref|ZP_05466883.1| transcriptional regulatory protein [Brucella melitensis bv. 2 str. 63/9] gi|260563668|ref|ZP_05834154.1| transcriptional regulatory protein [Brucella melitensis bv. 1 str. 16M] gi|265990726|ref|ZP_06103283.1| two component transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1] gi|265994564|ref|ZP_06107121.1| two component transcriptional regulator [Brucella melitensis bv. 3 str. Ether] gi|17983321|gb|AAL52510.1| two component response regulator [Brucella melitensis bv. 1 str. 16M] gi|225640502|gb|ACO00416.1| Transcriptional activator protein copR [Brucella melitensis ATCC 23457] gi|260153684|gb|EEW88776.1| transcriptional regulatory protein [Brucella melitensis bv. 1 str. 16M] gi|262765677|gb|EEZ11466.1| two component transcriptional regulator [Brucella melitensis bv. 3 str. Ether] gi|263001510|gb|EEZ14085.1| two component transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1] gi|263094644|gb|EEZ18423.1| transcriptional regulatory protein [Brucella melitensis bv. 2 str. 63/9] gi|326408637|gb|ADZ65702.1| transcriptional activator protein copR [Brucella melitensis M28] gi|326538359|gb|ADZ86574.1| transcriptional activator protein copR [Brucella melitensis M5-90] Length = 235 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 47/222 (21%), Positives = 86/222 (38%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D F + G S + E L + DV ++ L L Sbjct: 3 ILVIEDDREAARYLEKAFAEAGHSADIAGDGETGYALAENGNYDVLVVDRML--PKRDGL 60 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118 + +RA P++ +S + + +G DD + KP E+ V Sbjct: 61 SVVAGLRAKGMETPVLILSALGEVDDRVTGLRAGGDDYLTKPYAFSELLARVEVLQRRSS 120 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + ++ G + + Q L RE R+LEYLM + G+ V +T + ++ Sbjct: 121 PREADTIYRVGDLELDRLTHTARRQSVDITLQPREFRLLEYLMRHAGQVVTRTMLLENVW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + NV++ HIS+LR K+ + + R GY + Sbjct: 181 D-YHFDPQTNVIDVHISRLRSKIEKGFDEPLLHTVRGAGYML 221 >gi|328955049|ref|YP_004372382.1| two component transcriptional regulator, winged helix family [Coriobacterium glomerans PW2] gi|328455373|gb|AEB06567.1| two component transcriptional regulator, winged helix family [Coriobacterium glomerans PW2] Length = 234 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 50/231 (21%), Positives = 91/231 (39%), Gaps = 15/231 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++ +D + + G G + + + + V+ ++ + Sbjct: 6 LIAEDDGDIIEILSLYLGGSGYEVRAARNGADALEILRREQVAVALVDIM--MPKMNGYD 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L + RA SQVP+I IS + D+G D + KP E+ A + A+ RR Sbjct: 64 LIKAARAESQVPIIIISARAEAADKIIGLDAGADGYITKPFDPLEVTAYIRAVLRRGGSH 123 Query: 123 NN-----------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + R + G + ++ GE L E RI+ LM+ G+ K Sbjct: 124 GHATQSLSGRGDGRIQVGDLEFDTERLCLAKGGEPIALTAAELRIVAALMSRPGRIFTKA 183 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 Q+++ + G ++ N V HIS +R KL + + + R LGY ++ Sbjct: 184 QLYACVNGRPCDSG-ANSVMVHISNIRAKLEDDPLSPRFIKTVRGLGYRLE 233 >gi|308068218|ref|YP_003869823.1| transcriptional regulatory protein yycF [Paenibacillus polymyxa E681] gi|305857497|gb|ADM69285.1| Transcriptional regulatory protein yycF [Paenibacillus polymyxa E681] Length = 239 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 46/227 (20%), Positives = 95/227 (41%), Gaps = 12/227 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++D + +G ++ + + + + DV ++ L Sbjct: 7 LIVDDEQGLRDMLTTVLKKEGFLQVKHAATGQEALQVVMESHMDVIVLDVMLPDS--DGF 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R ++ P++ ++ + L F G DD + KP + E++AR+ A + KV Sbjct: 65 EVCRQMRLYTDAPILFLTARDTDLDKLMGFGIGGDDYITKPFNPLEVVARMKARMKYRKV 124 Query: 122 SNNRAETGPIRVFSDGRD-------PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + V+ + P RE +L +L + + + Q++ Sbjct: 125 PTVAMKPALRTLDFGYFRLELESGVLYVEDKQVECPAREWLLLVFLCKHPNRIFSVRQLY 184 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 AI+ +E V HIS+LRKK+ + + + R LGY + Sbjct: 185 EAIWSEA-FLGDEKTVVIHISRLRKKIEPDPKHPQFLINVRGLGYKM 230 >gi|293394379|ref|ZP_06638679.1| DNA-binding response regulator [Serratia odorifera DSM 4582] gi|291423357|gb|EFE96586.1| DNA-binding response regulator [Serratia odorifera DSM 4582] Length = 237 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 41/228 (17%), Positives = 85/228 (37%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + D+G + + D ++ L G L Sbjct: 7 ILIVEDDGNIAELLQLHLRDEGFDISHAGDGNLGMAMLEQGGWDALILDLML--PGIDGL 64 Query: 62 ELPRI-IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-------REILARVA 113 E+ R P+I S S + + G DD + KP + + R Sbjct: 65 EICRRARNMTRYTPIIITSARSSEVHRVLGLELGADDYLAKPFSMLELVARVKALFRRQE 124 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 A+ R L++ + + R+ + + L RE +L + + GK ++ + Sbjct: 125 AMSRNLRLDAGILSIDGLDIDPISREVHLNQQPLDLTPREFDLLYFFARHPGKVFSRLSL 184 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + ++G + E+ V +HI++LR KL N + + + +GY Sbjct: 185 LNQVWG-YQHEGYEHTVNTHINRLRIKLERNPAEPERILTVWGMGYKF 231 >gi|257792037|ref|YP_003182643.1| two component transcriptional regulator, winged helix family [Eggerthella lenta DSM 2243] gi|257475934|gb|ACV56254.1| two component transcriptional regulator, winged helix family [Eggerthella lenta DSM 2243] Length = 237 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 47/232 (20%), Positives = 84/232 (36%), Gaps = 14/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A + + +G S A D+ ++ L G L Sbjct: 6 ILIVEDDADINALLAKIVAREGFGCVQAYSGTEALLQMERAAFDLVLLDMMLPGMDGPTL 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 S+VP+I +S + +G DD V KP E+ AR+ A+ RR Sbjct: 66 MACMRDELASRVPVIVVSAKAGSADKVGMLAAGADDYVTKPFDPDEVAARIHAVLRRAAG 125 Query: 122 SNNRAETGPIRVFSDGRDPEV------------QGEVFPLPRRERRILEYLMANRGKRVA 169 ++ A G + + L E IL LM + K + Sbjct: 126 ASAAAGAGGVCPDDEALVHRDLRLDVARRRVTLGDAEVALTAHEFDILHVLMRSPDKVFS 185 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220 + ++ ++ E+N V H+S +RKKL G D + + +G+ + Sbjct: 186 RELLYELVW-KNGYYGEQNAVNVHVSNIRKKLAAAGGAGDYIKTVWGIGFKL 236 >gi|223934896|ref|ZP_03626815.1| two component transcriptional regulator, winged helix family [bacterium Ellin514] gi|223896349|gb|EEF62791.1| two component transcriptional regulator, winged helix family [bacterium Ellin514] Length = 254 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 41/228 (17%), Positives = 75/228 (32%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD + G + ++ S ++ L G Sbjct: 22 LLVIDDDRKLCRLIKDYLEPMGYEIALAHTGPEGAEKAVSETFAAVILDVML--PGMDGF 79 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARVA 113 E+ + IR S VP++ ++ + + G DD + K RE Sbjct: 80 EVLKQIRRASNVPVLMLTARGDESDRIVGLEIGADDYLPKTFSTRELLARLRAVTRRSNQ 139 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 +RV R + + L E +L L +G+ ++ Q+ Sbjct: 140 TTKATETPDAQEIVIQDLRVNEGSRTAVLGDKPLDLTPVEYDLLASLARAKGRIKSREQL 199 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 I + V + ++ HIS LRKKL + + + R GY + Sbjct: 200 LDEI-AERNYDVFDRSIDVHISALRKKLGDDPKSPRFIRTVRTAGYML 246 >gi|171740938|gb|ACB54965.1| PhoP [Pseudomonas fluorescens] Length = 225 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 60/223 (26%), Positives = 106/223 (47%), Gaps = 5/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D AL++ D G ++ + E + D++ I+ L G L Sbjct: 3 LLVVEDEALLRHHLQTRLSDSGHVVQAVANAEEALYQVREFNHDLAVIDLGL--PGISGL 60 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119 EL R +R P++ ++ + Q ++ +G DD V KP E+ AR+ A+ R Sbjct: 61 ELIRRLRSQDKTFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + GP+ + + + + E L E RILEYLM + + VAK ++ +Y Sbjct: 121 GFTQSTIVAGPLLLDLNRKQASLGDEPLALTAYEYRILEYLMRHHQQVVAKDRLMEQLY- 179 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 D+ + NV+E + +LR+KL GF P+D+ R LGY + Sbjct: 180 PDDDERDPNVIEVLVGRLRRKLEAPAGFKPIDTVRGLGYLFNE 222 >gi|2947107|gb|AAC28777.1| regulatory protein BvrR [Brucella abortus] Length = 237 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 42/228 (18%), Positives = 79/228 (34%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 L+DD + +G +E + + +++ + + Sbjct: 10 IALVDDDRNILTSVSIALESEGYRVETYTDGASALDGLMARPPNLAIFDI--KMPRMDGM 67 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR--------EILARVA 113 EL R +R S +P+I ++ L G DD + KP R + Sbjct: 68 ELLRRLRQKSDLPVIFLTSKDDEIDELFGLKMGADDFITKPFSQRLLVERVKAVLRRVAR 127 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + E G + + + +GE L E IL L G ++ + Sbjct: 128 RHAKPAGQQAKSLERGQLVMDQERHTCTWKGEPVTLTVTEFLILHSLAQRPGVVKSRDAL 187 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 A Y V++ ++SHI +LRKK + F+ +++ +GY Sbjct: 188 MDAAYDE-QVYVDDRTIDSHIKRLRKKFKAVDDSFEMIETLYGVGYRF 234 >gi|302388419|ref|YP_003824241.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] gi|302199047|gb|ADL06618.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] Length = 236 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 42/226 (18%), Positives = 89/226 (39%), Gaps = 12/226 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++I+D + + A+ +G + + + L +S D+ ++ L +E Sbjct: 8 LIIEDEDAICNFISAILSSNGYQVVKAKTGKEGLSLFTSHVPDLILLDLGL--PDIDGIE 65 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARVAAI 115 + + +R S+ P+I +S + + D G DD + KP R + Sbjct: 66 ILKNLRQWSKTPVIVVSARGYEREKVAALDFGADDYIVKPFGTSELLARIRTAMRHSPQA 125 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + G + + R GE L E ++L L N GK + I Sbjct: 126 AGTEVWGEEKVTIGKLAIDYGKRTVYKAGEKIHLTPIEYKLLVLLSKNAGKVLTHDFIIR 185 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 I+G++ E E + + +++ +R+K+ N + ++ +GY + Sbjct: 186 EIWGVYTE--ESHTLRVNMANIRRKIEANPGAPQYILTEMGVGYRM 229 >gi|271962875|ref|YP_003337071.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270506050|gb|ACZ84328.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 222 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 44/221 (19%), Positives = 86/221 (38%), Gaps = 7/221 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L +D + + +G +E S D+ ++ L LE Sbjct: 5 LLAEDDTSISEPLARALRREGYQVEVSPDGPQALERALSGGIDLIVLDLGL--PEMDGLE 62 Query: 63 LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R IRA P++ ++ T+ D+G DD V KP E+ + Sbjct: 63 VARRIRAEGHGTPVLILTARVDEVDTVVGLDAGADDYVTKPFRLAEL--LARVRALLRRG 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 ++ +R+ +D R + + L +E +L L+ + GK V + QI ++ Sbjct: 121 TSETPVVQGVRIDADSRRAWMGDKELHLTTKEFDLLRVLVRDAGKVVTREQIMREVWDT- 179 Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221 + ++ HIS LR+KL + + + R +G+ + Sbjct: 180 NWWGSTKTLDMHISWLRRKLGDDAAKPRYITTVRGVGFRFE 220 >gi|228993584|ref|ZP_04153492.1| DNA-binding response regulator [Bacillus pseudomycoides DSM 12442] gi|228766175|gb|EEM14821.1| DNA-binding response regulator [Bacillus pseudomycoides DSM 12442] Length = 231 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 41/226 (18%), Positives = 90/226 (39%), Gaps = 9/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G ++ + + + + ++ L Sbjct: 4 ILIVEDDPNISSLLQSHIQKYGYEAVVADNFDDIMDSFNRVKPHLVLLDVNL--PKFDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 R IR S P+I IS + +SG DD + KP H+ ++A++ RR+ Sbjct: 62 YWCRQIRHESTCPIIFISARAGEMEQIMAIESGADDYITKPFHYDVVMAKIKGQLRRIYG 121 Query: 122 SNNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + I F + + + L ++E + E L++ + + + + Sbjct: 122 DYAPNISERIVEVEGLKLFPERPEIHFGTKQVLLTKKEAILAEMLLSKHPRTANREDLLA 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 A++ + VEEN + +I++LRKK + +++ R LGY + Sbjct: 182 ALWD-DESFVEENTLNVNITRLRKKFNELGIENAIETVRGLGYRFN 226 >gi|254505752|ref|ZP_05117898.1| two-component system response regulator [Vibrio parahaemolyticus 16] gi|219551405|gb|EED28384.1| two-component system response regulator [Vibrio parahaemolyticus 16] Length = 235 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 45/226 (19%), Positives = 88/226 (38%), Gaps = 11/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ G G + G + D+ ++ G+ Sbjct: 6 ILVVDDNLDLREALSDYLGRAGFEVIGAGNGREMWQQLKKHTPDLIILDIM--MPGDDGF 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L + +R SQ+P+I ++ + + G DD + K RE+LAR+ I RR ++ Sbjct: 64 TLCQKLRRDSQIPIIMLTAVTEEADRVAGLEMGADDYITKSFSPRELLARIKTILRRSQL 123 Query: 122 SNNRAETGPIRVFSDGRDPEVQ-------GEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + +R D + +V L + +L + N +++ I Sbjct: 124 NPQTQLARKVRFDDWSLDTVTRQLTRLEDHQVKQLSGADLSLLGLFVNNAKSILSRDDIA 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I+G D E ++ IS+LR L +K + + R GY + Sbjct: 184 REIWGR-DADPFERGIDVQISRLRHHLEDK-DRSLILTVRNKGYML 227 >gi|81427892|ref|YP_394891.1| two-component system, response regulator [Lactobacillus sakei subsp. sakei 23K] gi|4104605|gb|AAD10265.1| putative response regulator [Lactobacillus sakei subsp. sakei 23K] gi|78609533|emb|CAI54579.1| Two-component system, response regulator [Lactobacillus sakei subsp. sakei 23K] Length = 228 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 38/228 (16%), Positives = 88/228 (38%), Gaps = 9/228 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + ++G + + ++ + + ++ + Sbjct: 3 ILIVDDDKEIVELLSIYVKNEGYEPIQAFTGKEALTKIATN-PGIDLMILDIMMPNMSGI 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILA------RVAAI 115 E+ + +R SQVP++ +S + + +G DD V+KP + E++A R + Sbjct: 62 EVIKAVRKDSQVPILVVSAKTTDMDKIQGLITGADDYVSKPFNPLEVMARVKSLLRRSQQ 121 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 +V + + + G+ L E IL L ++ + + IF Sbjct: 122 QVTNEVPDILEVGPLVIKRDSHEVTTIAGKQIQLTALEFGILYLLASHPNRVFSADDIFE 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 ++ + V V H+S LR K+ G +++ +GY ++ Sbjct: 182 RVW-KQESIVSAKTVMVHVSHLRDKIEEATDGEKVIETVWGVGYKVEV 228 >gi|326938289|gb|AEA14185.1| two-component response regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 223 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 52/222 (23%), Positives = 99/222 (44%), Gaps = 7/222 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A + + + + D+ ++ + E +L D ++ G Sbjct: 3 LLVVEDNASLLESIVQILRDE-FEVDTAINGEDGLFLALQNIYDAILLDVM--MPGMDGF 59 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118 E+ + IR + P++ ++ SL+ + D G DD + KP E+ AR+ A Sbjct: 60 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + I +F +D +V G+ L ++ +LEYL+ N GK + + QIF ++ Sbjct: 120 SLTTQQTIRYRGIELFGKDKDVQVDGQGIKLTLKQYELLEYLIQNSGKILMREQIFDRVW 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G FD +VE ++ LRKKL + + R +GY + Sbjct: 180 G-FDSDTTVAIVEVYVHHLRKKLEPSGYQKDIQTVRGIGYIL 220 >gi|266624703|ref|ZP_06117638.1| regulatory protein VanR [Clostridium hathewayi DSM 13479] gi|288863426|gb|EFC95724.1| regulatory protein VanR [Clostridium hathewayi DSM 13479] Length = 244 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 55/228 (24%), Positives = 85/228 (37%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 + DD +++ L DG + + D+ ++ G + Sbjct: 20 ILFADDDPEIREVVRILLARDGYEVVEAVNGIEAVEKAD-HTIDLIILDVM--MPGCSGV 76 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E IR S P++ ++ + + F +G DD + KP E+ ARV A+ RR V Sbjct: 77 EACGEIRKKSSAPILFLTAKSRDRDKEEGFAAGGDDYLVKPFSSVELKARVNAMLRRYCV 136 Query: 122 SNNRAETGPI-------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + T +F+D + GE L E RIL L NR K I+ Sbjct: 137 YKGKKGTEREVISLPGLEIFADTEEVIKNGERVLLTDIEYRILLLLAENRKKTYTTQDIY 196 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 A++ N V HI LRKKL + + + GY ID Sbjct: 197 EAVWNEPFLFSSNNTVMVHIRNLRKKLEDDPQNPRCIRNVWGKGYRID 244 >gi|237794074|ref|YP_002861626.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] gi|229263707|gb|ACQ54740.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] Length = 230 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 47/226 (20%), Positives = 86/226 (38%), Gaps = 9/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + + S D+ ++ L G Sbjct: 7 ILVVEDNNDINKLLCDMLRQSEYITKSAYSGTEALIYLKEYDWDMVLLDLML--PGMDGK 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 +L IR +P+I IS ++ G DD + KP E+ AR+ + RR K Sbjct: 65 KLLSNIRKSKPMPVIIISAKEEKDIKIEALRMGADDYITKPFDIDEVSARIDSHLRRYKE 124 Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 +N ++ D R+ + + L RE IL+ LM K K+ +F + Sbjct: 125 FSNITPQNLLKYKEISLNKDTREVFIHNKQIMLTTREFDILQLLMGYPKKVFTKSNLFES 184 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 ++ + +N + HIS LR KL + + + +GY +D Sbjct: 185 VWS-SEYLCNDNTINVHISNLRNKLSKAGTENEYIQTIWGIGYKLD 229 >gi|163838816|ref|YP_001623221.1| two-component response regulator [Renibacterium salmoninarum ATCC 33209] gi|162952292|gb|ABY21807.1| two-component response regulator [Renibacterium salmoninarum ATCC 33209] Length = 247 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 52/222 (23%), Positives = 92/222 (41%), Gaps = 8/222 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + G ++ + + R DV ++ L G +E Sbjct: 25 LVVDDEPSLAELMSMGLQMAGWDVQVAHDGNEALKIAREYRPDVLVLDIML--PGFDGVE 82 Query: 63 LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L IR +P + ++ ++Q + +G DD V KP E+L R+ I +R V Sbjct: 83 LLGKIRLFAPNIPALFLTAKDAVQDRVAGLTAGGDDYVTKPFSMEEVLLRLHRIVQRAGV 142 Query: 122 SNNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + D R + L E +L YLM N + ++KTQI ++ Sbjct: 143 IAEDSAEVRVGDLVLNHDTRQVTRGADDVTLTATEFELLRYLMENPKRVISKTQILDRVW 202 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D + N+VE +IS LRKK+ + + R GY + Sbjct: 203 -NYDFGGQVNIVELYISYLRKKIEAN-HPPMIHTVRGAGYIL 242 >gi|121607345|ref|YP_995152.1| two component heavy metal response transcriptional regulator [Verminephrobacter eiseniae EF01-2] gi|121551985|gb|ABM56134.1| two component heavy metal response transcriptional regulator, winged helix family [Verminephrobacter eiseniae EF01-2] Length = 231 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 44/221 (19%), Positives = 91/221 (41%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + + G +++ + + L DV ++A L G Sbjct: 3 ILIVEDEHKMAEYLRKGLSEQGCTVDLAANGIDGQHLAIWHDYDVIVLDAML--PGLDGF 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120 + R +R Q P+I ++ ++ + G DD + KP E+LAR+ A R Sbjct: 61 SVLRSLRILKQTPVIMLTARDRVEDRIKGLHDGADDYLIKPFSFLELLARLQALTRRGRA 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + G +++ R L +E +L + +G+ ++KT I ++ + Sbjct: 121 QEPAQLRIGDLQIDLLSRKALRNNTRIDLTAKEFALLAIMARRQGEILSKTAIAELVWDM 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + NVVE I +LR K+ + + R +GY ++ Sbjct: 181 -NFDSNTNVVEVAIKRLRAKIDAPFSQKLLHTIRGMGYVLE 220 >gi|325675782|ref|ZP_08155466.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707] gi|325553753|gb|EGD23431.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707] Length = 218 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 39/222 (17%), Positives = 80/222 (36%), Gaps = 9/222 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + A +G ++ + D+ ++ L G LE Sbjct: 2 LVVDDEHTISESIAARLRAEGYAVRTAFDGPSAVTECEAFGPDLVVLDVML--PGFDGLE 59 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDV--VNKPIHHREILARVAAIYRRLK 120 + R I+A VP++ ++ + G DD + Sbjct: 60 VCRRIQASRAVPVLMLTARADETDLVIGLGVGADDYLGKPFSMRVLVARISALLRRADRT 119 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 ++ G + + R G L R E +L +L + +A+ + ++G Sbjct: 120 TDSDVLVLGDVSIDLSARLVRSAGIEVHLTRTEFDLLAHLASRPRAAIAREILLEQVWGW 179 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 D V+SH+ LR+KL G D + + +GY+++ Sbjct: 180 GD-GASSRTVDSHVKALRRKL----GGDVIRTVHGVGYALEV 216 >gi|295094577|emb|CBK83668.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Coprococcus sp. ART55/1] Length = 239 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 52/228 (22%), Positives = 98/228 (42%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A + + D+G + S++ + + + D+ ++ L Sbjct: 11 ILIVDDDADLSMLIQDMLEDNGYAFLYAASIDDAYEVLTDNKCDLILLDINL--PDGTGF 68 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + +R SQVP+I S S ++ D G DD + KP +E+++R+ +I RR Sbjct: 69 SFCKELRHTSQVPIIFASARTSEDDKVNGLDMGGDDYIAKPYSLKELMSRIRSILRRTYG 128 Query: 122 SNNRAETG--------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 ++ I + R + +E +L Y+ NRG+ + K QI Sbjct: 129 VDDNKSEMLTLNTDGNEIEINRHARTVNRNKSNVDMKPKEFDLLVYMAENRGRVLTKEQI 188 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 SA++GL+ VE + V H+ LR+KL + + + GY + Sbjct: 189 MSAVWGLY-SDVEPSTVAVHVRWLREKLETDPSHPQLIRTVWGTGYVL 235 >gi|291522104|emb|CBK80397.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Coprococcus catus GD/7] Length = 237 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 46/231 (19%), Positives = 86/231 (37%), Gaps = 12/231 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + +G + + I+ L Sbjct: 6 ILIVDDDREIVRVIAKILELEGYRTLKAYDGLEALDMLVGNVVHLIMIDIM--MPKMNGL 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 IR + +P+I +S + G DD ++KP + +E++ARV A RR Sbjct: 64 AAVMKIRETNNIPIIILSAKTEETDKVLGLSMGADDYISKPFNTQEMIARVKAQLRRYMR 123 Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + ++ V GE L E +I+E LM+N G+ +I Sbjct: 124 LGAMNSESMQDSIRIGDLYLDKHAKELNVNGESVHLTATEYKIMELLMSNPGRVFPAEEI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223 + ++ +VE N V HI ++R+K+ N + +GY I+ + Sbjct: 184 YERVWQEPAYSVE-NTVMVHIRRIREKIEINPKQPKYLKVVWGIGYKIEKD 233 >gi|227496770|ref|ZP_03927043.1| response regulator [Actinomyces urogenitalis DSM 15434] gi|226833723|gb|EEH66106.1| response regulator [Actinomyces urogenitalis DSM 15434] Length = 252 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 50/223 (22%), Positives = 98/223 (43%), Gaps = 9/223 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD ++ D + +G + + DV ++ L LE Sbjct: 24 LVVDDEQMLADLLASALRYEGWDVTTAATGVKAVQAAQEIEPDVVVLDIML--PDFDGLE 81 Query: 63 LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR----VAAIYR 117 + R IR VP++ ++ +++ + +G DD V KP E++AR + Sbjct: 82 VMRRIRGRQPSVPVLFLTAKDAVEDRVSGLTAGGDDYVTKPFSLEEVVARLRALLRRSGA 141 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + ++ E G +R+ D + L E +L YLM N + ++K QI + Sbjct: 142 HAEQDDHVLEVGDLRMDEDSHEVWRGDTEIHLTATEFELLCYLMRNPRRVLSKPQILDRV 201 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + +D ++N+VE +IS LR+K+ +K + + R +GY + Sbjct: 202 W-NYDFGGQDNIVELYISYLRRKI-DKGREPMIHTMRGVGYVL 242 >gi|145297360|ref|YP_001140201.1| two-component system response regulator [Aeromonas salmonicida subsp. salmonicida A449] gi|142850132|gb|ABO88453.1| two-component system response regulator [Aeromonas salmonicida subsp. salmonicida A449] Length = 218 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 52/223 (23%), Positives = 98/223 (43%), Gaps = 9/223 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + G + + +L + D ++ L G L Sbjct: 3 ILIVEDEKTLAGQLAEQLRLSGFVTDLCHDGNEAGFLGETEPYDAIILDLGL--PGRDGL 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119 + + R+ P++ ++ L ++ ++G DD + KP E++ARV A + R Sbjct: 61 SVLKEWRSKGIDTPVLVLTARGQLHEKIEGLNAGADDYLTKPFQVAELVARVQALVRRAA 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +++ E G +R+ +G L E R+L YLM +RGK V+++++ IY Sbjct: 121 GNASSILEIGGVRLDMAASQVWYEGTPIKLTAHEFRVLGYLMQHRGKVVSRSELIDHIY- 179 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 D + N VE I ++RKK D +++ R LGY I+ Sbjct: 180 AQDFDRDSNTVEVFIGRIRKK----THADLIETVRGLGYRINE 218 >gi|114569487|ref|YP_756167.1| two component transcriptional regulator [Maricaulis maris MCS10] gi|114339949|gb|ABI65229.1| two component transcriptional regulator, winged helix family [Maricaulis maris MCS10] Length = 225 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 49/220 (22%), Positives = 98/220 (44%), Gaps = 9/220 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + D G +++ E ++ + DV ++ L + Sbjct: 4 LVVEDDPDLNRQLGRALEDAGYAVDAAVDGEDGHFMGDTEPYDVVVLDLGL--PKMDGVT 61 Query: 63 LP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120 + R +A P++ ++ + FD+G DD + KP H E+LAR+ A R Sbjct: 62 VLERWRQAGRDFPVLILTARDRWSEKVAGFDAGADDYLTKPFHTEELLARMRALTRRAAG 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + E G + + + G + G + E R+L YL ++ + +++T++ IY Sbjct: 122 HTTATIECGGLSIDTRGARVFIDGAPVKVTSHEFRMLSYLAHHQDRVISRTELVEHIYDQ 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D + N +E + +LRKK+ G D +++ R LGY + Sbjct: 182 -DFDRDSNTIEVFVGRLRKKI----GTDRIETVRGLGYRL 216 >gi|152996884|ref|YP_001341719.1| two component transcriptional regulator [Marinomonas sp. MWYL1] gi|150837808|gb|ABR71784.1| two component transcriptional regulator, winged helix family [Marinomonas sp. MWYL1] Length = 226 Score = 135 bits (340), Expect = 5e-30, Method: Composition-based stats. Identities = 52/223 (23%), Positives = 91/223 (40%), Gaps = 5/223 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++I+D + + A G + + + + D+ ++ L G +E Sbjct: 5 LIIEDEPKLAELMSAYLEQAGYEHHHLDRGDIAVNYIKNNQVDIVLLDLML--PGLDGVE 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLKV 121 + + +R S VP+I ++ L + G DD V KP REI+ARV A R Sbjct: 63 ICKQVRQFSGVPIIMVTAKAEEIDRLIGLEMGADDYVCKPFSPREIVARVKANLRRVELD 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 T + D +G++ L E ++L+ L+ G+ + I +IY Sbjct: 123 QAESPRTDGFDLDVDRLRATYKGDLIDLTTVEFQLLQLLIKEPGRVFGRDLIMKSIY-AD 181 Query: 182 DEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223 V + ++SHI KLRKK+ + + S GY + N Sbjct: 182 SRVVSDRTIDSHIKKLRKKISAVAPELNVIHSVYGAGYRFENN 224 >gi|110635897|ref|YP_676105.1| two component transcriptional regulator [Mesorhizobium sp. BNC1] gi|110286881|gb|ABG64940.1| two component transcriptional regulator, winged helix family [Chelativorans sp. BNC1] Length = 233 Score = 135 bits (340), Expect = 5e-30, Method: Composition-based stats. Identities = 44/230 (19%), Positives = 80/230 (34%), Gaps = 14/230 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 L+DD + +G +E + SS ++ ++ + Sbjct: 4 IALVDDDRNILTSVSIALESEGYRVETYTDGASALEGLSSRPPSLAILDI--KMPRMDGM 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILAR 111 EL R +R + +P+I ++ L G DD V KP R + Sbjct: 62 ELLRRLRQKTDLPVIFLTSKDDEIDELFGLKMGADDFVRKPFSQRLLVERVRAVLRRASA 121 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + + E G + + + + E L E IL L G ++ Sbjct: 122 RENGAKAPDKQSRSLERGHLVMDQERHTCTWKDEPVTLTVTEFLILHALAQRPGVVKSRD 181 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + A Y V++ ++SHI +LRKK + FD +++ +GY Sbjct: 182 ALMDAAYDE-QVYVDDRTIDSHIKRLRKKFKAVDGEFDMIETLYGVGYRF 230 >gi|330505347|ref|YP_004382216.1| DNA-binding response regulator CreB [Pseudomonas mendocina NK-01] gi|328919633|gb|AEB60464.1| DNA-binding response regulator CreB [Pseudomonas mendocina NK-01] Length = 226 Score = 135 bits (340), Expect = 5e-30, Method: Composition-based stats. Identities = 53/223 (23%), Positives = 97/223 (43%), Gaps = 6/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A + D + +G + L + D++ ++ L Sbjct: 4 ILIVEDEAAIADTLVYALQAEGFVTRWSSLGGEALMLLENDAFDLAILDVGL--PDISGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + +R S+VP+I ++ + + G DD V KP RE+ ARV AI +R+ Sbjct: 62 EVCKRLRRFSEVPVIFLTARSEEIDRVVGLEIGADDYVVKPFSPREVAARVKAILKRVAP 121 Query: 122 SNNR--AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + ++ G+ L R E R+L L+ + ++ Q+ A+ G Sbjct: 122 REAPAASAPSIFQIDDAAFRIHYHGQALSLTRHEFRLLRTLLGQPRRVYSREQLLDAL-G 180 Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + EA E ++SHI +R KLR +P+ + R LGYS + Sbjct: 181 VASEAGYERNIDSHIKSVRAKLRAIAPSEEPIQTHRGLGYSYE 223 >gi|282895633|ref|ZP_06303758.1| Multi-component Transcriptional regulator, Winged helix family [Raphidiopsis brookii D9] gi|281199327|gb|EFA74192.1| Multi-component Transcriptional regulator, Winged helix family [Raphidiopsis brookii D9] Length = 1329 Score = 135 bits (340), Expect = 5e-30, Method: Composition-based stats. Identities = 53/222 (23%), Positives = 96/222 (43%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D AL+ ++E N + L + D+ ++ L + Sbjct: 3 ILVVEDDALIACTLSNFLTYQNYAVEVANDGKTAWDLVETYEYDLILLDIVL--PKLDGI 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L + IR+ + P++ ++ S D+G DD V KP E++ARV A+ RR Sbjct: 61 SLCKKIRSSGRRVPILLLTGRDSSHDKAIGLDAGADDYVVKPCDEEELVARVRALLRRGG 120 Query: 121 VSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 V++ E G +R+ + Q + L +E +LE LM N + + I ++ Sbjct: 121 VTSQPVLEWGGLRLDPSSCEVTYQQDQLSLTPKEYALLELLMRNNRRVFSCGMILDHLWS 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220 D E+ V +HI LR KL+ D V++ +GY + Sbjct: 181 YEDTPGED-AVRTHIKGLRMKLKAAGAPHDLVETVYGIGYRL 221 Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 13/79 (16%), Positives = 25/79 (31%), Gaps = 2/79 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++ DD + + L G + +S + DV ++ L+ G E Sbjct: 1077 LVCDDDPITRQELKNLLLQGGYRVLTVDSGDQAIAQAVIQHPDVILLD--LVMPGMNGWE 1134 Query: 63 LPRIIRAHSQVPLIGISDY 81 ++ S I I Sbjct: 1135 TMAGLKKCSDTKDIPIVIC 1153 Score = 59.7 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 27/71 (38%), Gaps = 2/71 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + L G+ + N E D+ ++ G + Sbjct: 384 ILVVDDDLKTLELLQVLLTPWGLEIVTLNYPEQFWSTWEKIHPDMLILDI--EMPGMSGI 441 Query: 62 ELPRIIRAHSQ 72 EL ++IR+H Q Sbjct: 442 ELCKMIRSHDQ 452 Score = 39.7 bits (91), Expect = 0.30, Method: Composition-based stats. Identities = 6/37 (16%), Positives = 12/37 (32%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWL 38 ++I+D + D LF + + L Sbjct: 1206 ILIIEDDHDLADLLATLFDRHDIETFIAKTGREAIHL 1242 >gi|260467116|ref|ZP_05813295.1| two component transcriptional regulator, winged helix family [Mesorhizobium opportunistum WSM2075] gi|259029128|gb|EEW30425.1| two component transcriptional regulator, winged helix family [Mesorhizobium opportunistum WSM2075] Length = 239 Score = 135 bits (340), Expect = 5e-30, Method: Composition-based stats. Identities = 44/224 (19%), Positives = 95/224 (42%), Gaps = 12/224 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ ++G + + + + D+ ++ GE + Sbjct: 20 LLVVDDDTRIRNLLKQYLTENGFRVTVAGNADEARRKLAGLDFDLLVLDVM--MPGESGV 77 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118 +L + +RA VP++ ++ + + ++G DD + KP RE++ R+ I RR Sbjct: 78 DLTKSLRAEKNVPILMLTALSETDSRISGLEAGADDYLPKPFDPRELILRINNILRRGGP 137 Query: 119 -LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + GP R+ + GE L RE+ IL A G+ + + ++ Sbjct: 138 ATTPKVEQLVFGPYTFQIARRELKRGGEALKLTDREQEILAIFAARAGETIPRHELV--- 194 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 D V E ++ I++LR+K+ + + + R +GY + Sbjct: 195 --GDDSEVGERTIDVQINRLRRKIERDPSNPVWLQTVRGIGYRL 236 >gi|182420209|ref|ZP_02951439.1| regulatory protein VanR [Clostridium butyricum 5521] gi|237665789|ref|ZP_04525777.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E BL5262] gi|182375907|gb|EDT73498.1| regulatory protein VanR [Clostridium butyricum 5521] gi|237658736|gb|EEP56288.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E BL5262] Length = 226 Score = 135 bits (340), Expect = 5e-30, Method: Composition-based stats. Identities = 46/225 (20%), Positives = 92/225 (40%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++D D + + + ++ + + Sbjct: 5 ILIVDDDKEIRDLISLYLEADRFYTDKAADGVEALIKLEEKKYSLVILDIM--MPKKDGI 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E IR ++P+I ++ ++ G DD ++KP E++ARV A RR + Sbjct: 63 ETIIEIRKKYKMPVIFLTAKSQEIDMINGLTLGADDYISKPFSSLELIARVKAQLRRYTI 122 Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 N ++ IRV ++ + V+G L E +ILE + NR K +++ Sbjct: 123 LNLNSDEKIIRVGDLVLNTEMHEVTVKGNEVRLTPTEYKILEVMCKNRNKVFTVEELYEF 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 I+ +V + + HI+KLR+K+ + + + +GY I Sbjct: 183 IWKEK-YSVSDTSIMVHITKLRRKIEKDSKNPEYIKTVWGIGYKI 226 >gi|148379888|ref|YP_001254429.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 3502] gi|148289372|emb|CAL83468.1| two-component response regulator [Clostridium botulinum A str. ATCC 3502] Length = 228 Score = 135 bits (340), Expect = 5e-30, Method: Composition-based stats. Identities = 47/225 (20%), Positives = 88/225 (39%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + F D G + ++ D+ I ++ Sbjct: 5 ILIVDDEDDIVSFIKDYFEDQGYRVITASNGREAIEYCDK---DIDIILLDIMMPNIDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + IR P+I +S S + G DD + KP +E+ ARV A RR K Sbjct: 62 QVCQKIRDKVSCPIIFLSARQSEVDKIKGLSVGGDDYIVKPFSIKELKARVEAHLRREKR 121 Query: 122 SNNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + I + R + E +E I+E L + + +K QI+ + Sbjct: 122 VPLNNRSKIIFGKLTLDLNSRKVHYEEEEILFTAKEFDIVELLALHPEQIFSKEQIYEKV 181 Query: 178 YGLFDEAVEENVVESHISKLRKK-LRNKLGFDPVDSKRFLGYSID 221 +G +D + N V HI K+R K ++ + + + + +GY + Sbjct: 182 WG-YDAEGDANTVAEHIKKIRAKFIKISVSLNHIATVWGVGYRWE 225 >gi|146282012|ref|YP_001172165.1| two-component response regulator [Pseudomonas stutzeri A1501] gi|145570217|gb|ABP79323.1| probable two-component response regulator [Pseudomonas stutzeri A1501] gi|327480260|gb|AEA83570.1| two-component response regulator [Pseudomonas stutzeri DSM 4166] Length = 238 Score = 135 bits (340), Expect = 5e-30, Method: Composition-based stats. Identities = 42/225 (18%), Positives = 94/225 (41%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDG-VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 ++++D + + +G + + R D+ ++ L GE Sbjct: 8 ILIVEDDRRLAELTQEYLHGNGGFEVSIESDGACAVERIIEERPDLVVLDLML--PGEDG 65 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L + R +R P++ ++ + ++G DD V KP+ R +LAR+ A+ RR + Sbjct: 66 LSICRRVRDRYDGPILMLTARADDLDQVLGLETGADDYVCKPVRPRLLLARIRALLRRRE 125 Query: 121 VSNNRAETGPIR----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + S R+ ++ L E +L L +N G+ +++ +IF+ Sbjct: 126 AEVPASAKRLQFGPLVIDSALREAWLREHQIELTGAEFDLLWLLTSNPGRILSREEIFAQ 185 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 + G+ + ++ ++ IS++R K+ + + + R GY Sbjct: 186 LRGI-EYDGQDRSIDVRISRIRPKIGDDPDHPRLIKTVRGKGYLF 229 >gi|89896612|ref|YP_520099.1| hypothetical protein DSY3866 [Desulfitobacterium hafniense Y51] gi|89336060|dbj|BAE85655.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 228 Score = 135 bits (340), Expect = 5e-30, Method: Composition-based stats. Identities = 40/227 (17%), Positives = 87/227 (38%), Gaps = 10/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + + +G ++ S D+ ++ L Sbjct: 4 ILIIEDDVNIAELERDYLQLNGYQVDIVLDGATGLKKAVSGAYDILIVDLML--PQLDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL-- 119 E+ + +R ++P+I +S + D G DD + KP E++AR+ + +R Sbjct: 62 EIIKEVRKKLEIPIIVLSARSEDIDKIRGLDYGADDYLTKPFSPAELMARIRSHLKRYER 121 Query: 120 ----KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 S + + + V G+ +E +L + +N +K +IF Sbjct: 122 LTGKNQSPEVINHRGLEINTASHKVSVNGKEVQFTAKEYELLLFFASNPNILFSKERIFD 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 ++G + + V HI K+RKK+ + + +++ GY + Sbjct: 182 LLWGA-EYYGDLATVPVHIQKIRKKIERDPANPEYIETVWGTGYRFN 227 >gi|148243637|ref|YP_001219877.1| two component heavy metal response transcriptional regulator [Acidiphilium cryptum JF-5] gi|146400200|gb|ABQ28735.1| two component heavy metal response transcriptional regulator, winged helix family [Acidiphilium cryptum JF-5] Length = 225 Score = 135 bits (340), Expect = 5e-30, Method: Composition-based stats. Identities = 44/221 (19%), Positives = 87/221 (39%), Gaps = 5/221 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D A ++G + + E D ++ L E Sbjct: 4 LIVEDEAKTAAYLRKGLEENGFTADVATDGETGLEFARHGGYDAIILDIML--PRRNGFE 61 Query: 63 LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120 + IR SQ ++ ++ + + ++G DD + KP E+LARV I R Sbjct: 62 ILDEIRRRDSQTAVLLLTARDQVTDRVAGLEAGADDYLVKPFAFSELLARVRTILRRGHA 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + + G G+ L +E R+L L G +++T I ++ + Sbjct: 122 RQPALIQIADLEIDLSGHRATRAGQALDLTPKEFRLLSLLARRAGDVISRTVIAEQVWDI 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + NVV+ H+ +LR KL + + + R +GY ++ Sbjct: 182 -NFDSGTNVVDVHMYRLRAKLDDPFSRRLIHTVRGVGYVLE 221 >gi|150016917|ref|YP_001309171.1| two component transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149903382|gb|ABR34215.1| two component transcriptional regulator, winged helix family [Clostridium beijerinckii NCIMB 8052] Length = 225 Score = 135 bits (340), Expect = 5e-30, Method: Composition-based stats. Identities = 42/222 (18%), Positives = 90/222 (40%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D ++ G +G + + + + ++ + L Sbjct: 3 ILLVEDDKIIASGLEYSLKQEGFDTMVCYDISSAKGVIEDNKFNLCLFDLSL--PDGSGY 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL +++R P+I ++ + D G DD + KP RE+++R+ ++ RR Sbjct: 61 ELCKLVREKDDTPVIFLTACDDEVNVVMGLDIGADDYITKPFRIRELISRIRSVIRRYGK 120 Query: 122 SNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++ IR+ + L E R+L N G+ +++ QI I+ Sbjct: 121 DSSSKAILELNNIRINTLDAKVYKNDAEITLTALEYRLLLIFANNPGQVLSRNQILEGIW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYS 219 + + V +N + +I ++R+KL + + + R LGY Sbjct: 181 DVAGDFVNDNTLTVYIKRIREKLEDDPQKPTIIKTVRGLGYK 222 >gi|330977884|gb|EGH77787.1| two component transcriptional regulator [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 220 Score = 135 bits (340), Expect = 5e-30, Method: Composition-based stats. Identities = 47/223 (21%), Positives = 96/223 (43%), Gaps = 9/223 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D + +G +G +++ S D++ ++ L Sbjct: 3 LLLIEDDVALGEGIQQALSREGYTVDWIKDGSSALHALLSESFDLAILDVGL--PTLSGF 60 Query: 62 ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119 E+ R + + S +P++ ++ + + + DSG DD + KP E+ AR+ A + R Sbjct: 61 EVLRRLRHSGSTLPVMILTARDATEDRIIGLDSGADDYLVKPFDVSELKARLRALLRRSA 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + E IR+ + L +E ++L L++ G+ + + ++ +YG Sbjct: 121 GRAKVLIEHNGIRLDPSTQQVSYHDAAVALTPKEYQLLYELLSPPGRVMTRERLMQLLYG 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 ++E E N +E HI LRKK + + R +GY ++ Sbjct: 181 -WNEEAESNTLEVHIHHLRKK----FSSTLIRTIRGVGYLVEE 218 >gi|331001460|ref|ZP_08325078.1| transcriptional regulatory protein QseB [Parasutterella excrementihominis YIT 11859] gi|329568189|gb|EGG50006.1| transcriptional regulatory protein QseB [Parasutterella excrementihominis YIT 11859] Length = 227 Score = 135 bits (340), Expect = 5e-30, Method: Composition-based stats. Identities = 42/222 (18%), Positives = 92/222 (41%), Gaps = 9/222 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D ++ + +G +++ + + ++ L G+ L Sbjct: 12 ILLVEDDEMIGEAVADGLKGEGYAVDWVKDGNSAIIALDTTPFSLVILDLGL--PGKDGL 69 Query: 62 ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + + I + P++ + ++ ++ D+G DD + KP E+ AR+ A+ RR Sbjct: 70 AVLKEIRFRKNHTPVLVTTARDTVNDRIEGLDAGADDYLIKPYDLDELSARIRALLRRSA 129 Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++ + R+ GE L +E +L L G +++ Q+ +Y Sbjct: 130 GRSDPIIRRGRLTINPSTREVLFNGESVLLSSKEYALLFALAERPGIVLSRAQLEEKLY- 188 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ + N +E HI LRKKL + + R +GY ++ Sbjct: 189 NYESLIGSNAIEVHIHHLRKKLSEDS----IKTVRGVGYVLE 226 >gi|323142343|ref|ZP_08077175.1| response regulator receiver domain protein [Phascolarctobacterium sp. YIT 12067] gi|322413227|gb|EFY04114.1| response regulator receiver domain protein [Phascolarctobacterium sp. YIT 12067] Length = 228 Score = 135 bits (340), Expect = 5e-30, Method: Composition-based stats. Identities = 46/227 (20%), Positives = 92/227 (40%), Gaps = 10/227 (4%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEK 59 M ++D + + + G+ +G +S L ++ ++ L G Sbjct: 1 MIFCVEDEQNICELEVYTLQSVGMEAQGCSSGRELFALLEKQVPELIVLDIMLPDEDGVS 60 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +L R + +S +P+I + S + DSG DD + KP E++AR+ A+ RR Sbjct: 61 ILRRLRADKRYSNIPVIMATAKGSEFDKVKGLDSGADDYIAKPFGMLEMVARIKAVLRRC 120 Query: 120 KVSNNRAETGPIRVF------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + V G L +E +L + + G ++ ++ Sbjct: 121 AAPRRDEDDEETIRIGRLEVKQMEHKVSVGGSEVVLTLKEYELLRKFLQHPGIVFSRDKL 180 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + I+G ++ + E V+ HI LR+KL + +++ R +GY + Sbjct: 181 LNDIWG-YEFSGETRTVDVHIRTLRQKLGEAG--ELIETIRGVGYRM 224 >gi|298249466|ref|ZP_06973270.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297547470|gb|EFH81337.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 233 Score = 135 bits (340), Expect = 5e-30, Method: Composition-based stats. Identities = 41/224 (18%), Positives = 89/224 (39%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + ++ ++ L S D ++ L Sbjct: 3 ILVVEDEKKLAHLLRRVLQEESHTVNLAYDGLSGLELAESGTYDAVVLDVML--PELDGF 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYR 117 E+ R +R + + P++ ++ S++ + + G DD + KP E + + Sbjct: 61 EICRRMRTDNVMSPVLMLTARGSVEDRVAGLNVGADDYLPKPFAMEELLARVNALLRRRD 120 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 R + + + + V L +E +LEYLM + G+ + +TQI A+ Sbjct: 121 RTFEVATQLRADDLILDLVRHEARRGERVIELTAKEFALLEYLMRHPGQALTRTQITDAV 180 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + +D NVV+ +I LR K+ + + R +GY ++ Sbjct: 181 W-RYDLEALSNVVDIYIHYLRDKIDQGFTRPLIKTVRGIGYKLE 223 >gi|326316348|ref|YP_004234020.1| winged helix family two component transcriptional regulator [Acidovorax avenae subsp. avenae ATCC 19860] gi|323373184|gb|ADX45453.1| two component transcriptional regulator, winged helix family [Acidovorax avenae subsp. avenae ATCC 19860] Length = 232 Score = 135 bits (340), Expect = 5e-30, Method: Composition-based stats. Identities = 52/224 (23%), Positives = 95/224 (42%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS-AREDVSAIEAFLIGKGEKV 60 ++++D + D + G E + D++ ++ L G Sbjct: 8 ILVVEDEPDIADVVLDYLRHSGFEAEHVADGHAAIARLTGPTPPDLTLLDIML--PGMDG 65 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119 LE+ R R + P+I ++ L + G DD + KP RE++ARV + R Sbjct: 66 LEVLRQARRRTDRPIIMLTARVEEVDRLIGLELGADDYICKPFSPREVVARVRTVLRRST 125 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + A+ P+ + ++G L RE R+L+ L ++ G+ ++ Q+ Y Sbjct: 126 ARPSPAAQDAPLVLDEAFWQVHLRGTPVSLTPREFRLLQALASHSGRIFSRAQLLDMAYD 185 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFD--PVDSKRFLGYSID 221 V E ++SHI LR+KLR G D + S +G+S++ Sbjct: 186 DT-LDVNERAIDSHIKNLRRKLRAADGSDHEWIRSVYGVGFSLE 228 >gi|183222571|ref|YP_001840567.1| putative response regulator receiver [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189912606|ref|YP_001964161.1| response regulator [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167777282|gb|ABZ95583.1| Response regulator [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167780993|gb|ABZ99291.1| Putative response regulator receiver, transcriptional regulatory protein (C-terminal) [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 224 Score = 135 bits (340), Expect = 5e-30, Method: Composition-based stats. Identities = 40/224 (17%), Positives = 87/224 (38%), Gaps = 10/224 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + ++G E ++ D ++ L G + Sbjct: 3 ILIVDDEEDIAGLIQFHLEEEGFQTEVCHNGMEVLPRLEKNLPDGIILDLML--PGIGGM 60 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIY 116 +L + I+ + Q+P++ ++ + + G DD + KP + R + + Sbjct: 61 DLCKRIKEKYPQIPILMVTAKTGETDVVLGLELGADDYIRKPFNIRELVARVRSVTRRTT 120 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + TG I++ V+G L E ++L+ N G ++ ++ Sbjct: 121 DPSQEVQGTITTGKIQINPTAHKVFVEGTEIDLTLIEFKLLQLFAGNPGVAFSRDKLLDR 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I+G D V + V+ +I +LR KL + +++ R +GY Sbjct: 181 IWGK-DVFVTDRTVDVNIKRLRDKL--LSEKERLETIRGVGYRF 221 >gi|154499723|ref|ZP_02037761.1| hypothetical protein BACCAP_03380 [Bacteroides capillosus ATCC 29799] gi|150271321|gb|EDM98578.1| hypothetical protein BACCAP_03380 [Bacteroides capillosus ATCC 29799] Length = 227 Score = 135 bits (340), Expect = 5e-30, Method: Composition-based stats. Identities = 42/222 (18%), Positives = 90/222 (40%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 + ++D + DG G +++ +++ L S D+ ++ L Sbjct: 4 ILYVEDDLSLIDGLQYTLESSGYAVDNARTVKEALSLFRSNHYDLLLLDVTL--PDGTGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118 ++ + +R+ S +P+I ++ + + D G DD + KP E + + + Sbjct: 62 DVCKEVRSSSTIPIIFLTASDQEISIVKGLDMGGDDYITKPFKLNELLSRIKALLRRSLQ 121 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + E IRV ++ R GE LP E ++L M N + + I ++ Sbjct: 122 FSKAETILEANGIRVDTNERLVWKNGEPVDLPLVEYKLLCLFMKNPNHLMPREMILDRMW 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYS 219 V++N + +I +LR K+ + + ++R +GY Sbjct: 182 DGNGNFVDDNTLSVYIRRLRNKIEDTPNAPKYLLTERGIGYK 223 >gi|152985885|ref|YP_001350928.1| two-component response regulator [Pseudomonas aeruginosa PA7] gi|150961043|gb|ABR83068.1| two-component response regulator [Pseudomonas aeruginosa PA7] Length = 229 Score = 135 bits (340), Expect = 5e-30, Method: Composition-based stats. Identities = 48/222 (21%), Positives = 96/222 (43%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A + G+ G +++ +L R D+ ++ L G Sbjct: 3 ILVVEDDAKTGEYLKKGLGESGYAVDWSRHGADGLYLALENRYDLVVLDVML--PGLDGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ ++R VP++ ++ LQ + + G DD + KP E+L R+ + RR V Sbjct: 61 QIMEVLRKKHDVPVLFLTARDQLQDRIRGLELGADDYLVKPFSFTELLLRIRTLLRRGVV 120 Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + R QG++ L +E +L LM G+ +++T I S ++ + Sbjct: 121 REAEQVQLADLHLDVLRRKVSRQGQLIALTNKEFALLHLLMRREGEVLSRTLIASEVWDM 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + + NVV+ I +LR K+ N + + R +GY + Sbjct: 181 -NFDSDTNVVDVAIKRLRAKVDNPFPNKLIHTVRGIGYVCEE 221 >gi|78188418|ref|YP_378756.1| two component transcriptional regulator [Chlorobium chlorochromatii CaD3] gi|78170617|gb|ABB27713.1| two component transcriptional regulator, winged helix family [Chlorobium chlorochromatii CaD3] Length = 225 Score = 135 bits (340), Expect = 5e-30, Method: Composition-based stats. Identities = 42/220 (19%), Positives = 94/220 (42%), Gaps = 4/220 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + ++ +++ + + S DV ++ + + Sbjct: 3 LLIIEDEPGIAAFLKDGLEEEYFAVDLAFDGKSGLAMALSNDYDVLIVDWMIPA--LSGI 60 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +R VP+I ++ +L+ L ++G +D + KP E+LAR+ R Sbjct: 61 EVCRQVRKAGCLVPIIFLTARDTLEDVLFGLEAGANDYIKKPFAFEELLARIRVQLRSRT 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 G + + G L +E +LEYL+ N+ + +++I ++ + Sbjct: 121 QGEESLSAGGVTLNPATHQVTYNGSELILTPKEFALLEYLLRNKDRVCTRSRIIEHVWDI 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + +V++ +I+ LR+KL + + + R +GY I Sbjct: 181 H-FDADTSVIDVYITFLRRKLEAVGCNNFIQTIRGIGYII 219 >gi|75910288|ref|YP_324584.1| two component transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75704013|gb|ABA23689.1| two component transcriptional regulator, winged helix family [Anabaena variabilis ATCC 29413] Length = 225 Score = 135 bits (340), Expect = 5e-30, Method: Composition-based stats. Identities = 42/224 (18%), Positives = 93/224 (41%), Gaps = 6/224 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L++D + D+ +++ E ++ D+ ++ L +E Sbjct: 4 LLVEDDERIAASLTEALTDNNYAIDVAGDGEEGWDFITAFDYDLILLDVML--PKLNGIE 61 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-HREILARVAAIYRRLK 120 L + +R P++ ++ S + D+G DD V KP + A + R Sbjct: 62 LCQRLRQRGYGLPVLMLTARDSSTDKVLGLDAGADDYVIKPFDLKELLARIRALLRRGNT 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + E G +R+ + ++ + +E ++LE + N G +++ QI ++ Sbjct: 122 TISTFLEWGGLRLDPANCTVTYKEQLLLMTPKEYQLLELFLRNNGYVLSRRQILDHLWSS 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSIDWN 223 D ++ V+ HI +R+KL+ D +++ LGY ++ N Sbjct: 182 IDPPGQD-TVKVHIRGIRQKLKAAGAKDDFIETVYGLGYRLNQN 224 >gi|87119340|ref|ZP_01075238.1| possible baeR; Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Marinomonas sp. MED121] gi|86165731|gb|EAQ66998.1| possible baeR; Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Marinomonas sp. MED121] Length = 225 Score = 135 bits (340), Expect = 5e-30, Method: Composition-based stats. Identities = 49/224 (21%), Positives = 90/224 (40%), Gaps = 5/224 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + A G + + + D+ ++ L G + Sbjct: 4 ILIVEDEPKLAELLTAYLAQSGYESHHLDRGDIVIDYLKQNQVDLILLDLML--PGLDGM 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + +R S +P+I ++ L + G DD V KP RE++ARV A RR+ Sbjct: 62 EICKQVRLFSNIPIIMLTAKAEEIDRLLGLEMGADDYVCKPYSPREVVARVKANLRRVSF 121 Query: 122 SNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 D +GE+ L E ++L+ L++ G+ + I IY Sbjct: 122 DQVEEPKTEGFELDVDRLRVTYKGELIDLTTVEFQLLQLLISEPGRVFGREIIMKRIY-T 180 Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223 V + ++SHI KLRK++ + + S GY + N Sbjct: 181 DSRVVSDRTIDSHIKKLRKRISMVAPELNVIHSVYGAGYRFENN 224 >gi|23016749|ref|ZP_00056502.1| COG0745: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Magnetospirillum magnetotacticum MS-1] Length = 242 Score = 135 bits (340), Expect = 5e-30, Method: Composition-based stats. Identities = 42/234 (17%), Positives = 85/234 (36%), Gaps = 19/234 (8%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + G ++ + + D+ ++ L GE L Sbjct: 5 LIVDDDPEICALLTQFLTGQGYTVATAGDGDTMRQALVNEAADLVILDLML--PGEDGLS 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R +RA + +P+I ++ S + + G DD + KP RE+LAR+ A+ RR Sbjct: 63 LCRHLRATTSLPIIMLTAMGSETDRVVGLEMGADDYLAKPFSTRELLARIRAVLRRAGQM 122 Query: 123 NNRAETGPIRVFSDGRDPEVQGEV---------------FPLPRRERRILEYLMANRGKR 167 A P E G + E +L + + + Sbjct: 123 MQSAPREPTPADEPVEILEFSGWHLDVSRRRLTSPDGVLAEITSGEFDLLLAFLRHPHQV 182 Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 +++ Q+ G + ++ + +LR+K+ + + + R GY + Sbjct: 183 LSRDQLLDLARGRV-SGPFDRTIDVQVGRLRRKMETDPKTPELFKTVRGGGYVL 235 >gi|327439712|dbj|BAK16077.1| response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Solibacillus silvestris StLB046] Length = 236 Score = 135 bits (340), Expect = 5e-30, Method: Composition-based stats. Identities = 42/228 (18%), Positives = 86/228 (37%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + DG ++ S + S D ++ L + + Sbjct: 5 ILVVEDDENLVNLLHIYLVKDGYEVQCVRSGKEALAAIQSFEPDAMLLDWML--PDMEGI 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R P+I IS + + G + + KP RE+L R+ +R + Sbjct: 63 EICRQVRFDHDFPIIMISARTDELDIVLALEMGATEYIRKPFGFREMLTRLRIHLKRYER 122 Query: 122 SNNRAETGPIR------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + E V PL +RE ++L +L+ G ++ +I + Sbjct: 123 ELQQQERISQMLIGPFRVDLIMFKVYKDEVEIPLTKREFKLLLHLLEQPGSIKSREEIIN 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDW 222 + + V+ HI +LR+K+ + +K LGY ++ Sbjct: 183 IL---DFTKGDRRTVDVHIRRLREKIEEQPSSPKWIKTKSGLGYYFNF 227 >gi|239625973|ref|ZP_04669004.1| two component transcriptional regulator [Clostridiales bacterium 1_7_47_FAA] gi|239520203|gb|EEQ60069.1| two component transcriptional regulator [Clostridiales bacterium 1_7_47FAA] Length = 224 Score = 135 bits (340), Expect = 5e-30, Method: Composition-based stats. Identities = 50/220 (22%), Positives = 100/220 (45%), Gaps = 6/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ +D + A+ +G + +S E L S D++ ++ G Sbjct: 4 ILIAEDDKNTRKLMEAVLKSNGFNPIPASSGEEALKLLDSHHIDLAVLDIM--MPGMDGY 61 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL +R+ P++ ++ + F +G DD + KP+ E++ R+ A+ RR + Sbjct: 62 ELTTQLRSMDYNLPILMVTAKLLPEDKRKGFMAGTDDYMTKPVDEEEMVLRIRALLRRAQ 121 Query: 121 VSNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +++ R T + D G LPR+E +L L++ GK + Q+ I+G Sbjct: 122 IASERKITIGNVILDYDSLSVTRDGSSQTLPRKEFYLLYKLLSYPGKIFTRIQLMDEIWG 181 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 + + ++N + HI++LRK+ + F +++ R LGY Sbjct: 182 I-ESETDDNTINVHINRLRKRFEHYPEFT-IETIRGLGYK 219 >gi|91788575|ref|YP_549527.1| osmolarity response regulator [Polaromonas sp. JS666] gi|91697800|gb|ABE44629.1| two component transcriptional regulator, winged helix family [Polaromonas sp. JS666] Length = 245 Score = 135 bits (340), Expect = 5e-30, Method: Composition-based stats. Identities = 44/230 (19%), Positives = 90/230 (39%), Gaps = 14/230 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++D +G + + + D+ ++ GE L Sbjct: 13 ILILDDDARIRDLLRRYLAQEGFEVILAEDSKALNRIMLRDAVDLIVLDLM--MPGEDGL 70 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R +R A+ + P+I ++ + + G DD + KP + RE+LAR+ A+ RR Sbjct: 71 SICRRLRAANDRTPIIMLTAKGEDVDRIVGLEVGADDYLAKPFNPRELLARIHAVLRRRP 130 Query: 121 V---------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 GP R GE PL E +L+ L+ + + +++ Sbjct: 131 TAEVPGAPSSDQEVITFGPFSFDMGLRTLHKNGEELPLTTGEFAMLKTLVRHPRQPLSRE 190 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 ++ G + + ++ +S+LRK + + + +GY Sbjct: 191 KLAQLARGR-EFEPFDRSLDVQVSRLRKLIEVDAAVPRYIQTVWGIGYVF 239 >gi|89892848|ref|YP_516335.1| hypothetical protein DSY0102 [Desulfitobacterium hafniense Y51] gi|89332296|dbj|BAE81891.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 256 Score = 135 bits (340), Expect = 5e-30, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 90/228 (39%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ L +G +++ + ++ V ++ G+ Sbjct: 32 ILVVDDDPEIREIIHILLQREGFAVQV---AADADTALATLTPGVDLAILDIMMPGKSGF 88 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL IR + +P++ ++ + F G DD + KP E+++RV A+ RR + Sbjct: 89 ELCSEIRKTTTIPILFLTAKNQDADKAEGFSCGGDDYLVKPFSSIELISRVKALLRRYLI 148 Query: 122 SNNRAETGPI-------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + D GE L E ++ L+ NR K + +I+ Sbjct: 149 YQKQEPASKKEVRLGDLYIDLDTGTVARSGEKIALTSMEYQVFRLLLLNRRKVFSAKEIY 208 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221 I+ + N + HI LR+KL +G + + GY I+ Sbjct: 209 EHIWQEPFLPLSNNTIMVHIKNLRRKLEKDVGRPQYIRTVWGKGYYIE 256 >gi|117924789|ref|YP_865406.1| two component transcriptional regulator [Magnetococcus sp. MC-1] gi|117608545|gb|ABK44000.1| two component transcriptional regulator, winged helix family [Magnetococcus sp. MC-1] Length = 236 Score = 135 bits (340), Expect = 5e-30, Method: Composition-based stats. Identities = 47/227 (20%), Positives = 102/227 (44%), Gaps = 13/227 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-EDVSAIEAFLIGKGEKV 60 ++++D + + +G + + E + + R D+ ++ L G Sbjct: 5 ILIVEDERDLANTLEYSLKQEGFNARVALTGEEGMRIATVERWPDLVLLDLML--PGVSG 62 Query: 61 LELPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR 117 +E+ R +R +P+I ++ + F++G DD V KP RE++ R+ AI R Sbjct: 63 IEVCRRMREEDGTRTMPVIMLTARGEEIDKVMGFEAGADDYVVKPFKVRELVLRIRAILR 122 Query: 118 RLKVSNNR----AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 R++ G ++V +G V GE L E ++L ++ +G+ + + Sbjct: 123 RVQPEQAESAALVTFGRLKVDLEGHRVWVDGEESSLTAMEFKLLTTFLSRKGRVQNRDTL 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + ++G+ + V+ V++H+ +LR+KL +++ R +GY Sbjct: 183 LNDVWGV-NAFVQTRTVDAHVKRLREKLGPAG--KYMETIRGVGYRF 226 >gi|26988171|ref|NP_743596.1| DNA-binding response regulator CzrR [Pseudomonas putida KT2440] gi|148549489|ref|YP_001269591.1| two component heavy metal response transcriptional regulator [Pseudomonas putida F1] gi|24982905|gb|AAN67060.1|AE016334_9 DNA-binding response regulator CzrR [Pseudomonas putida KT2440] gi|148513547|gb|ABQ80407.1| two component heavy metal response transcriptional regulator, winged helix family [Pseudomonas putida F1] Length = 224 Score = 135 bits (340), Expect = 5e-30, Method: Composition-based stats. Identities = 41/222 (18%), Positives = 89/222 (40%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D D ++G ++ ++ L D+ ++ L Sbjct: 3 LLIIEDELRTADYLQQGLRENGYVVDCAHTGTDGLHLARQQAYDLVILDVNL--PEIDGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119 + + +RA S ++ ++ + L + D G DD + KP E+ R Sbjct: 61 TVLQRLRAESATRIMMLTAHGRLADRVKGLDLGADDYLLKPFEFPELLARIRSLLRRNDQ 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++ + + + G+ L +E +L LM G+ +++TQI S ++ Sbjct: 121 QLQPSTLRVADLELDPGRHRAYRAGQRIDLTAKEFALLHLLMRQTGEVLSRTQIISLVWD 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + + NVVE I +LR K+ + + + R +GY ++ Sbjct: 181 M-NFDCDTNVVEVSIRRLRAKIDDPFDNKLIHTLRGVGYVLE 221 >gi|291543087|emb|CBL16197.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus bromii L2-63] gi|291549580|emb|CBL25842.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus torques L2-14] Length = 233 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 46/228 (20%), Positives = 94/228 (41%), Gaps = 9/228 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++IDD + + +S + L ++ S I ++ + Sbjct: 5 LIIDDDKELCTLMKKCVEQENLSAVVAHGGLEGLRLLEENKDTCSLIILDVMMPDMNGFQ 64 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + IR + VP++ ++ + + G DD + KP E++ARV ++ RR Sbjct: 65 VLQEIRKKNNVPVLMLTAKSDEEDKVSGLRLGADDYLTKPFGINELMARVNSLIRRYTTL 124 Query: 123 NN-------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 N + + R +Q L +E +L +L +N+G+ K QI++ Sbjct: 125 NPVAGSEAATMLLKDMVIDKVNRTVTLQNLPVELTGKEFDLLVFLASNKGRVFTKKQIYT 184 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDW 222 ++ + A +++ + S ISKLRKK+ + + R +GY + Sbjct: 185 QVW-AEEYAFDDSNIMSFISKLRKKIEPNPEQPFYIQTVRGVGYRFNK 231 >gi|283768598|ref|ZP_06341510.1| putative regulatory protein VanR [Bulleidia extructa W1219] gi|283104990|gb|EFC06362.1| putative regulatory protein VanR [Bulleidia extructa W1219] Length = 232 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 41/225 (18%), Positives = 87/225 (38%), Gaps = 10/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L+DD + + + L + + + + D+ ++ + Sbjct: 4 ILLVDDEKDIVEALKIFLSKEDFELLTATNGKEALEIVQKEKVDLVLMDIM--MPIMDGV 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + IR + +P+I +S + ++ G DD + KP H E++AR+ A RR K Sbjct: 62 KATKEIRKNQNIPIIFLSAKGEREDKIEGLTIGADDYITKPFHPEEVIARIKAQLRRFKE 121 Query: 122 SNNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 ++ + + + + V G+ L E IL+Y + N K + I+ Sbjct: 122 LGSQQKDQEVYMLGGITLNDSLKLVNVDGKEISLTPVEYGILKYFIQNPKKLLTSQDIYQ 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219 ++ + E+ + HI LR+K+ + + GY Sbjct: 182 EVW-KEEPIGSESTIAVHIRHLREKIEIDPSHPRYIKVVWGRGYK 225 >gi|75909659|ref|YP_323955.1| two component transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75703384|gb|ABA23060.1| two component transcriptional regulator, winged helix family [Anabaena variabilis ATCC 29413] Length = 224 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 50/220 (22%), Positives = 97/220 (44%), Gaps = 5/220 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 + ++D A + + A + G ++ ++ + D ++ + G+ L Sbjct: 4 LFVEDEAKIANFVQAGLKEQGFVVDYCDNGDEGYLRALDNEYDAIILDIMV--PGKDGLS 61 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-AIYRRLK 120 + + +R + P+I ++ L L + G DD + KP E++AR+ + R + Sbjct: 62 ILKQLRQKGRNAPVILLTARNELDDRLAGLNLGADDYIAKPFFVEELVARIHAVVRRSIG 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 N G +++ R+ V L RE +LEYLM + G+ +TQI ++G Sbjct: 122 DRQNLLVIGTLKLDRITREVTCNQRVIELTSREFNLLEYLMRSPGRVFTRTQILEHVWG- 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D NVV+ I ++RKK+ ++S R +GY Sbjct: 181 YDFNPNTNVVDVCIQRIRKKIDPVDEAGWIESIRGVGYRF 220 >gi|127514565|ref|YP_001095762.1| osmolarity response regulator [Shewanella loihica PV-4] gi|126639860|gb|ABO25503.1| two component transcriptional regulator, winged helix family [Shewanella loihica PV-4] Length = 241 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 35/229 (15%), Positives = 86/229 (37%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ + G + + E + L + ++ L GE L Sbjct: 8 ILVVDDDMRLRALLERYLMEQGYQVRSAANAEQMDRLLERENFHLLVLDLML--PGEDGL 65 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112 + R +R + +P++ ++ + + G DD + KP + RE + + Sbjct: 66 SICRRLRQNGNTIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQA 125 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + G + R+ E L E +L+ L+++ + +++ + Sbjct: 126 PEVPGAPTQQEEEITFGEFTLNLATREMYHGEEAISLTSGEFAVLKVLVSHPREPLSRDK 185 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + + G D + E ++ +S+LR+ + + + + LGY Sbjct: 186 LMNLARGR-DYSALERSIDVQVSRLRRLIEKDAANPRYIQTVWGLGYVF 233 >gi|312130452|ref|YP_003997792.1| two component transcriptional regulator, winged helix family [Leadbetterella byssophila DSM 17132] gi|311906998|gb|ADQ17439.1| two component transcriptional regulator, winged helix family [Leadbetterella byssophila DSM 17132] Length = 222 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 44/223 (19%), Positives = 94/223 (42%), Gaps = 10/223 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + I + + + + + D+ ++ + + Sbjct: 5 ILVVDDDEDILELLIYNLEKEQYQVRSAENGLKAIEVAKEFQPDIILMDIMMPL--LDGI 62 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E +II+ Q LI ++ + + F+ G DD + KPI R +L+R+ A +R+ K Sbjct: 63 EAGKIIKTEQPQTHLIYLTARAEEYSEVAAFEVGADDYITKPIKPRALLSRIQAYFRKEK 122 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGE--VFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 V + + V LP++E IL +L ++ K ++ + I+ Sbjct: 123 SQEKNVLEISGLVINKQNYSVTTEDGSVKVLPKKEFEILYFLASHPNKVQSRDSLLQKIW 182 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 G VE ++ HI K+R+K+ +K + + + +GY + Sbjct: 183 GTDIYVVE-RTIDVHIRKVREKIGDK----YIGTLKGVGYMFN 220 >gi|255527989|ref|ZP_05394828.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296186290|ref|ZP_06854694.1| putative regulatory protein VanR [Clostridium carboxidivorans P7] gi|255508319|gb|EET84720.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296049091|gb|EFG88521.1| putative regulatory protein VanR [Clostridium carboxidivorans P7] Length = 235 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 37/228 (16%), Positives = 87/228 (38%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + +G + ++ + + ++ ++ L Sbjct: 5 LLIVEDDEAIANILKEHLEKEGYEVNWSSTGKEGLEDFKKYKFALAMVDIML--PEMDGF 62 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L + IR + +P++ +S + + G DD + KP E+ ARV A RR + Sbjct: 63 TLCKNIRWINEDIPIMILSAKQTDMDKVKGLKLGADDYITKPFSLTEVSARVEAHLRRYR 122 Query: 121 VSNNRAETGPIRVF-------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + F + + + G+ + +E +L+ + N K +K ++ Sbjct: 123 KMDKTLISNGTLKFKKDLIIIPEEKKVTINGQETQMTLKEFELLQLMAQNPNKVFSKEEL 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 + ++ D N V HI +LR+K+ + + + GY Sbjct: 183 YHHVWDSIDLDGN-NTVTVHIKELREKIGDSSKNPIFIQTVWGTGYKF 229 >gi|332143338|ref|YP_004429076.1| osmolarity response regulator [Alteromonas macleodii str. 'Deep ecotype'] gi|327553360|gb|AEB00079.1| osmolarity response regulator [Alteromonas macleodii str. 'Deep ecotype'] Length = 240 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 38/229 (16%), Positives = 87/229 (37%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ + G + + E + L + ++ L GE L Sbjct: 8 ILVVDDDMRLRSLLERYLLEQGYQVRSAANAEQMDRLLERENFHLMVLDLML--PGEDGL 65 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112 + R +R + +P+I ++ + + G DD + KP + RE + R Sbjct: 66 SICRRLRQQENDMPIIMLTAKGDEVDRIIGLEMGADDYLPKPFNPRELLARAKAVLRRRS 125 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + E G ++ R+ + L E +L+ L+ + + +++ + Sbjct: 126 SEAPGAPSKDVQIVEFGDYKLNLATREMTAGDKPLTLTSGEFAVLKSLVTHPREPLSRDK 185 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220 + + G D + E ++ +S+LR+ L + + + LGY Sbjct: 186 LMNLARGR-DYSALERSIDVQVSRLRRMLEEDPANPRYIQTVWGLGYVF 233 >gi|168178171|ref|ZP_02612835.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|182671139|gb|EDT83113.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] Length = 230 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 48/226 (21%), Positives = 86/226 (38%), Gaps = 9/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + + S D+ ++ L G Sbjct: 7 ILVVEDNNDINKLLCDMLRQSEYITKSAYSGTEALIYLKEYDWDMVLLDLML--PGMDGK 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL IR +P+I IS ++ G DD + KP E+ AR+ + RR K Sbjct: 65 ELLSNIRKSKPMPVIIISAKEEKDIKIETLRMGADDYITKPFDIDEVSARIDSHLRRYKE 124 Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 +N ++ D R+ + + L RE IL+ LM K K+ +F + Sbjct: 125 FSNITPQNLLKYKEISLNKDTREVFIHNKQIMLTTREFDILQLLMGYPKKVFTKSNLFES 184 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 ++ ++N + HIS LR KL + + + +GY +D Sbjct: 185 VWSSK-YLCDDNTINVHISNLRNKLSKAGTENEYIQTIWGIGYKLD 229 >gi|148241355|ref|YP_001226512.1| two-component system response regulator [Synechococcus sp. RCC307] gi|147849665|emb|CAK27159.1| Two-component system response regulator [Synechococcus sp. RCC307] Length = 260 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 92/228 (40%), Gaps = 9/228 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +LI+D +++ G ++ + + L D+ ++ L G + Sbjct: 5 ILLIEDDRDMRELVAGNLEHSGFDVQKADDGIKGQALALQYIPDLIVLDLMLPRVDGLTL 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R +Q+P++ ++ + + F+SG DD + KP E+LARV A+ RR Sbjct: 65 CQRLRRDDRTAQIPILMLTALAGTKDKVTGFNSGADDYLTKPFELEELLARVKALLRRSD 124 Query: 121 VSNNRAETGPIRVF------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + ++ I F + + + L E +L L+ G+ VA + I Sbjct: 125 RAPLSSKHSEILSFGPITLVPERFEAIWFDQPVRLTHLEFELLHCLLQRHGQTVAPSLIL 184 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 ++G ++ + + HI LR KL + + + GY ++ Sbjct: 185 KEVWG-YEPDDDIETIRVHIRHLRTKLEPDPRKPRFIKTVYGAGYCLE 231 >gi|134099376|ref|YP_001105037.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|291009928|ref|ZP_06567901.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|133911999|emb|CAM02112.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 220 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 53/224 (23%), Positives = 90/224 (40%), Gaps = 11/224 (4%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + ++++D V A+ G G E + S D+ ++ L Sbjct: 2 LLLIVEDDDHVASALAAVLGRHGFDTERARTGAQALEAL-SHDPDLVLLDLGL--PDTDG 58 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +L R +R P++ ++ + + + G DD V KP E++AR+ A+ RR Sbjct: 59 FDLCRRMRQRYDRPILVVTARTDTRARIHGLNLGADDYVVKPYDVGELIARIHAVARRSA 118 Query: 121 VS----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 GPI V D R+ V G L R+E +L L G ++ QI S Sbjct: 119 PRGETATPTRHAGPISVDVDSREATVDGRPVQLTRKEFDLLAMLARQPGVVFSRGQILSE 178 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ + +E H++ LR KL D V + R +GY + Sbjct: 179 VWSTH-WQGSQRTLEVHVASLRTKL---GLPDAVQTVRGVGYRL 218 >gi|77459846|ref|YP_349353.1| two component heavy metal response transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77383849|gb|ABA75362.1| two-component system, response regulator [Pseudomonas fluorescens Pf0-1] Length = 224 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 36/222 (16%), Positives = 79/222 (35%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G ++ + L D+ ++ L Sbjct: 3 ILVVEDELKAAEYLHQGLTESGYIVDHAVNGADGLHLAQQQVYDLIILDVNL--PELDGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119 + +R ++ ++ L + D G DD + KP E+ R Sbjct: 61 SVLEQLRRTHSTRVMMLTARGRLADKIRGLDLGADDYLVKPFEFPELLARVRTLMRRSEN 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + + + L +E +L LM G+ + +TQI S ++ Sbjct: 121 IPVPQVLKVADLELDPGRHRAFRGTQRIDLTTKEFALLHLLMRQSGEVLTRTQIISLVWD 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + + NVVE I +LR K+ + + + R +GY ++ Sbjct: 181 M-NFDCDTNVVEVSIRRLRAKIDDPFDSKLIHTLRGVGYVLE 221 >gi|330973443|gb|EGH73509.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 267 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 48/225 (21%), Positives = 92/225 (40%), Gaps = 9/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD +++ ++ G + DV ++ L GE L Sbjct: 41 LIVDDDVAIRELLCDYLTRFNINARGVTDGTQMRQALTDETFDVVVLDLML--PGEDGLS 98 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R +R+ S +P++ ++ + + G DD + KP RE++AR+ I RR++ Sbjct: 99 LCRWLRSTSDIPILMLTARCEPNDRIIGLELGADDYMAKPFEPRELVARIQTILRRVRDE 158 Query: 123 NNRAETGPIRVFSD-----GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + T + G V PL E R+L + + +++ Q+ A Sbjct: 159 RSDQRTTIRFDAWRLNSVLRQLTAADGLVVPLSNAEFRLLRVFLERPHRVLSREQLLDAA 218 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 G EA + ++ +S+LR+KL + + + R GY D Sbjct: 219 RGRSIEAFD-RSIDLLVSRLRQKLGDDPKNPQLIKTVRGEGYLFD 262 >gi|225575152|ref|ZP_03783762.1| hypothetical protein RUMHYD_03241 [Blautia hydrogenotrophica DSM 10507] gi|225037619|gb|EEG47865.1| hypothetical protein RUMHYD_03241 [Blautia hydrogenotrophica DSM 10507] Length = 222 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 42/222 (18%), Positives = 87/222 (39%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D +++ + G + + S D+ ++ Sbjct: 4 ILIVEDEKKMQEIIVEYMQRGGHICFTADDGIDALVVLKSNPMDLMILDIM--MPNLDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + +I R S +P+I ++ S L +D G DD + KP + +LA+ A+ RR + Sbjct: 62 SVCKIAREMSNLPIIMLTAKGSEDDKLKGYDLGADDYMTKPFSPKVLLAKANALLRRSSL 121 Query: 122 SNNRAETGPIRVFSD-GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 V G+ L +E +L + M N + ++ Q+ + I+G Sbjct: 122 LPADTINAGKISLVPASHKVFVNGKEIVLTHKEYELLYFFMVNPEQIFSREQLLNRIWG- 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D V++HI LR+KL ++ + + GY + Sbjct: 181 YDFEGTTRTVDTHIKTLRQKLGDEG--KHIVTLIRSGYKFEV 220 >gi|170755846|ref|YP_001781047.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] gi|169121058|gb|ACA44894.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] Length = 233 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 42/228 (18%), Positives = 86/228 (37%), Gaps = 10/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + G + + ++ ++ L Sbjct: 5 IMIIEDDKNIARLLGEHIEKYGYEALVAKDFKKILETFEIEKPNLILLDINL--PKFDGY 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 R IR S P+I IS S + +SG DD + KP ++ +LA++ + RR+ Sbjct: 63 YWCRRIREKSLCPIIFISARDSEMNQVMAIESGADDYITKPFYYDVVLAKIKSQLRRVYG 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRI-------LEYLMANRGKRVAKTQIF 174 + +G + R+E + L+ +M + + ++ Sbjct: 123 DYAANSQVERILDVEGLLFYPERLQVHFTRKETMLSKKEGDLLDAMMKIYPRVATREELL 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 I+ V+EN + +I++LRKKL + D +++ R GY ++ Sbjct: 183 EKIWDDTTF-VDENTLNVNIARLRKKLLDLGIKDSIETVRGAGYRLNV 229 >gi|157373309|ref|YP_001471909.1| osmolarity response regulator [Shewanella sediminis HAW-EB3] gi|157315683|gb|ABV34781.1| two component transcriptional regulator, winged helix family [Shewanella sediminis HAW-EB3] Length = 241 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 35/229 (15%), Positives = 84/229 (36%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ + G + + E + L + ++ L GE L Sbjct: 8 ILVVDDDMRLRALLERYLMEQGYQVRSAANSEQMDRLLERENFHLLVLDLML--PGEDGL 65 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112 + R +R P++ ++ + + G DD + KP + RE + + Sbjct: 66 SICRRLRQTGNPIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQS 125 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + G + R+ E L E +L+ L+++ + +++ + Sbjct: 126 QDVPGAPTQQEEEITFGEFALNLATREMYHGEEAISLTSGEFAVLKVLVSHPREPLSRDK 185 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + + G D + E ++ +S+LR+ + + + + LGY Sbjct: 186 LMNLARGR-DYSALERSIDVQVSRLRRLIEKDPANPRYIQTVWGLGYVF 233 >gi|229543190|ref|ZP_04432250.1| two component transcriptional regulator, winged helix family [Bacillus coagulans 36D1] gi|229327610|gb|EEN93285.1| two component transcriptional regulator, winged helix family [Bacillus coagulans 36D1] Length = 232 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 45/226 (19%), Positives = 94/226 (41%), Gaps = 12/226 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + + L S D+ ++ + L Sbjct: 4 IMIVEDDVKIARVLELELQHEHYDTVWVENGSQALNLLESEDWDLVLLDVMI--PCLSGL 61 Query: 62 ELPRI-IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------- 113 E+ R +S+ P+I ++ S+ ++ D G +D + KP + E+LAR+ Sbjct: 62 EVLRRYRMRNSRTPVILLTARNSVLDKVNGLDHGANDYITKPFNIEELLARIRAALRTGA 121 Query: 114 -AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + + V + R G+ L +RE +L YL+ N+ + + Q Sbjct: 122 LHTGKSENSKKHEYALADLLVNTATRQVTRGGKPIELTKREFDLLCYLLKNKRIVLNREQ 181 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 + + ++G F+ A + NVV+ +I LRKK+ + + + R +GY Sbjct: 182 LLNEVWG-FEYAGDTNVVDVYIGYLRKKIDHGHETALIHTVRGVGY 226 >gi|256389440|ref|YP_003111004.1| two component transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256355666|gb|ACU69163.1| two component transcriptional regulator, winged helix family [Catenulispora acidiphila DSM 44928] Length = 238 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 43/224 (19%), Positives = 86/224 (38%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++D F G + + ++ D ++ + Sbjct: 14 LLVVDDDTEIRDAIARAFRLQGYRVRTASGGLAALEQVAADPPDAIVLDVM--MPELDGV 71 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIH----HREILARVAAIY 116 E+ R +R P++ ++ ++ + D+G DD + KP H + A + Sbjct: 72 EVCRRLRGVGDHTPVLLLTARDAVGDRVAGLDAGADDYLVKPFALAELHARMRALLRRSE 131 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + R + + + R G L R E +LE LM N G+ + + I Sbjct: 132 YDPVPESERLVFEDLELDPESRLAYRGGRTIELTRTEFALLELLMRNAGRVLPREVISDR 191 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I+G ++ E N +E +S +R+K V + R GY++ Sbjct: 192 IWG-YELGPESNSLEVFVSCIRRKTEGGGEPRLVQTVRGFGYTL 234 >gi|228999620|ref|ZP_04159197.1| DNA-binding response regulator [Bacillus mycoides Rock3-17] gi|229007167|ref|ZP_04164786.1| DNA-binding response regulator [Bacillus mycoides Rock1-4] gi|228754082|gb|EEM03508.1| DNA-binding response regulator [Bacillus mycoides Rock1-4] gi|228760146|gb|EEM09115.1| DNA-binding response regulator [Bacillus mycoides Rock3-17] Length = 231 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 42/226 (18%), Positives = 90/226 (39%), Gaps = 9/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G ++ + + + + ++ L Sbjct: 4 ILIVEDDPNISSLLQSHIQKYGYEAVVADNFDDIMDSFNRVKPHLVLLDVNL--PKFDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 R IR S P+I IS + +SG DD + KP H+ ++A++ RR+ Sbjct: 62 YWCRQIRHESTCPIIFISARAGEMEQIMAIESGADDYITKPFHYDVVMAKIKGQLRRIYG 121 Query: 122 SNNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + I F + + E L ++E + E L++ + + + + Sbjct: 122 DYAPNISERIVEVEGLKLFPERPEIHFGSEQVLLTKKEAILAEMLLSKHPRTANREDLLA 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 A++ + VEEN + +I++LRKK + +++ R LGY + Sbjct: 182 ALWD-DESFVEENTLNVNITRLRKKFNELGIENAIETVRGLGYRFN 226 >gi|225872589|ref|YP_002754044.1| response regulator DrrA [Acidobacterium capsulatum ATCC 51196] gi|225791970|gb|ACO32060.1| response regulator DrrA [Acidobacterium capsulatum ATCC 51196] Length = 232 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 36/226 (15%), Positives = 89/226 (39%), Gaps = 9/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++D A + G ++ +++ + ++ + G L Sbjct: 5 IFVLEDDADIARLVQHNLQSAGYAIRLYSTPANLLSDAERQPPALFMLDIMV--PGGDGL 62 Query: 62 ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIY 116 ++ R +R H S +P+I ++ + + G DD + KP RE+ + Sbjct: 63 DVCRRLRNHAALSSIPIIFVTARAGENDRVLGLELGADDYITKPFAPRELLARVKAVLRR 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + + + + +V+GE+ E R+L+YL + G+ ++ + A Sbjct: 123 FERPSTPSLISFEDVVIDASAMQLKVRGELTTTTATEFRLLDYLARHPGRVFSRDHLLDA 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 ++G V V+ ++ ++R+K+ + + + R GY + Sbjct: 183 VWG-DARFVTPRSVDVYVRRIREKIESDPENPRFLKTVRGAGYRFE 227 >gi|16612082|gb|AAL27445.1|AF430807_10 VanRE [Enterococcus faecalis] Length = 229 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 45/229 (19%), Positives = 95/229 (41%), Gaps = 11/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + L ++G + S + + + + D++ ++ L Sbjct: 4 ILILDDEKEIVSLLSTLLSNEGYEVYEAMSGKESLEIIENNKIDLAILDVML--PDISGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + IR P++ ++ + G DD + KP + E+LARV RR + Sbjct: 62 DVLQSIREKQFFPVLMLTARGQDMDKITGLSMGADDYIVKPFNPFEVLARVKTQLRRYQT 121 Query: 122 SNNRAETGPIRV-------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N+++ + R + E L E IL YL N G+ ++ ++F Sbjct: 122 YNSQSIDETNEYAKNGLNISVNSRKVFLYDEEIKLTPIEFDILWYLCRNEGRVISSEELF 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSIDW 222 ++ D N V +HI+K+R+K+ + + + +GY+I+ Sbjct: 182 EKVW-KEDYLENNNTVMAHIAKIREKMHEKPRQPNIIKTVWGVGYTIEK 229 >gi|77458928|ref|YP_348434.1| two component transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77382931|gb|ABA74444.1| putative two-component response regulator Winged helix family [Pseudomonas fluorescens Pf0-1] Length = 241 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 48/229 (20%), Positives = 91/229 (39%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + F G ++ E + AR D ++ L GE L Sbjct: 9 LLIVDDDGEILSLLKKFFVQHGYQVDVAAHGEAMWAAIAQARPDTIILDLML--PGEGGL 66 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L + +RA +P+I ++ L + + G DD + KP +E+LARV A+ RR+ Sbjct: 67 SLCQKVRAQMGIPIIMLTAMAELSDRIVGLELGADDYLTKPFAPQELLARVRALQRRVGE 126 Query: 122 SNNRAETGPIRVFSDGRDPEVQGE---------VFPLPRRERRILEYLMANRGKRVAKTQ 172 + V + + P+ E +L L+ + + + + Q Sbjct: 127 NAPSGAEPSRPVMAFAGWHLDITCRELRSPEGVMIPMSAGEFDLLLVLLEHPQRILTREQ 186 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 + +G +A + ++ IS+LR+K+ D + + R GY Sbjct: 187 LIDLTHGQGHDAYD-RSIDVQISRLRRKIEPDSKRPDLIRTVRNGGYMF 234 >gi|121605101|ref|YP_982430.1| two component transcriptional regulator [Polaromonas naphthalenivorans CJ2] gi|120594070|gb|ABM37509.1| two component transcriptional regulator, winged helix family [Polaromonas naphthalenivorans CJ2] Length = 242 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 40/221 (18%), Positives = 85/221 (38%), Gaps = 6/221 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVL 61 ++++D + + G + + DV ++ L G G + Sbjct: 8 LIVEDEPAIAELIQVNLKHGGFIPVLAYDSVAAQRELDTMLPDVILLDWMLPGQSGLSLA 67 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119 L R +P++ ++ + D+G DD + KP +E+ R R Sbjct: 68 RLWRKQERTRSIPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIRAVLRRRAP 127 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + G + + + QG+ L E ++L YLM + + +++ + ++G Sbjct: 128 ESQGDSVTVGALVLDAATHRIAWQGQDLKLGPTEFKLLHYLMKHPERVHSRSSLLDKVWG 187 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +EE V+ H+ +LR+ L V++ R GY + Sbjct: 188 DH-VFIEERTVDVHVKRLREALGAAGA--MVETVRGAGYRL 225 >gi|313623681|gb|EFR93833.1| transcriptional regulatory protein SrrA [Listeria innocua FSL J1-023] Length = 228 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 40/228 (17%), Positives = 81/228 (35%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D V + F + + + + D++ I+ L + Sbjct: 3 LLMIEDNVSVCEMIEMFFMKEEIDATFVHDGKLGYETFFKDDFDIAIIDLML--PNMDGM 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAA 114 + R IR S VP+I ++ S + + G DD V KP ++ R Sbjct: 61 TICRKIREVSDVPIIILTAKESESDQVLGLEMGADDYVTKPFSPLTLMARIKAVTRRKNN 120 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + T + L +E +L +LM + + ++ Q+ Sbjct: 121 HTTTENDEDILETTYFKISKRTREIFYQDELLDALTPKEFDLLYFLMQHPRQVFSREQLL 180 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 ++G + +E V+ HI +LR+K+ + + +GY D Sbjct: 181 EQVWG-YQFYGDERTVDVHIKRLRQKIATDTKP-FLHTVWGVGYKFDE 226 >gi|297153701|gb|ADI03413.1| putative two-component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 227 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 36/226 (15%), Positives = 84/226 (37%), Gaps = 9/226 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + + ++ L +S + DV ++ L ++ Sbjct: 5 LVVEDDPQLVRALVINLQARHYDVDAAPDGTTALRLAASHQPDVVVLDLGL--PDMDGVD 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-----ILARVAAIYR 117 + + +R + VP++ +S + + + D+G DD + KP E + Sbjct: 63 VIKALRGWTPVPVLVLSARRASEEKVAALDAGADDYMTKPFSMDELLARLRASVRRTEAG 122 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 +T V + G L E +LE L+ N G+ V + + + Sbjct: 123 PTAPETTLVKTDDFTVDLTAKKAHRDGRDVHLTPTEWHLLEILVTNPGRLVTQRHLLQEV 182 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 +G N + ++++LR+KL + + ++ +GY + Sbjct: 183 WGASQSNK-TNYLRVYMAQLRRKLEADPSHPRYLITEPGMGYRFEE 227 >gi|251779341|ref|ZP_04822261.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083656|gb|EES49546.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 229 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 29/226 (12%), Positives = 86/226 (38%), Gaps = 11/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D ++ + + E D++ ++ L G Sbjct: 4 ILLVEDEESIRGFIKINLKRNNFEVIEAECGEDGLKAAEKFSIDLAVLDVML--PGIDGF 61 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH------REILARVAA 114 ++ +R + ++ +I ++ + + G DD + KP + + + R A Sbjct: 62 KVCDELRKRYPKMGIIMLTARTQDMDKIMGLEYGADDYIIKPFNPLELILRIKAILRRTA 121 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 +K + ++ P + + + +E +++ + N K ++ ++ Sbjct: 122 DESEVKENIDKLIREPFIIDLYSQKLFKNNIEIDVTPKEYLLMKLFLKNPNKAFSRDELL 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYS 219 + I+G +D + +++ +I +LR K+ + + +++ GY Sbjct: 182 NLIWG-YDYFGDPKLIDVNIRRLRAKIEDTPSEPEFIETIWGKGYR 226 >gi|225568375|ref|ZP_03777400.1| hypothetical protein CLOHYLEM_04452 [Clostridium hylemonae DSM 15053] gi|225162823|gb|EEG75442.1| hypothetical protein CLOHYLEM_04452 [Clostridium hylemonae DSM 15053] Length = 232 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 41/226 (18%), Positives = 84/226 (37%), Gaps = 8/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 L++D + +G G + + + L + D+ ++ L Sbjct: 4 IFLVEDDLSLINGLSFALKKQGYETDIARTSLEAQNLWGNEDYDLVILDVSL--PDGSGY 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR---EILARVAAIYRR 118 EL +IIR S+VP+I ++ + D G DD + KP + + Sbjct: 62 ELCKIIRRTSKVPIIFLTAADEETDIIMGLDIGGDDYITKPFKLAILLSRINALLRRSDN 121 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + I+V + L E ++L M N ++ QI S ++ Sbjct: 122 FNETTTELNSNGIKVKLLKGEVYKNESQLDLTASEYKLLCLFMENPDIVLSPEQILSKLW 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDWN 223 ++ ++ + + +I +LR K+ + + + R +GY WN Sbjct: 182 DCDEKYIDSSTLTVYIRRLRTKIEDTPGQPQKILTVRGMGYK--WN 225 >gi|332297448|ref|YP_004439370.1| two component transcriptional regulator, winged helix family [Treponema brennaborense DSM 12168] gi|332180551|gb|AEE16239.1| two component transcriptional regulator, winged helix family [Treponema brennaborense DSM 12168] Length = 233 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 52/228 (22%), Positives = 88/228 (38%), Gaps = 16/228 (7%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D L+++ DG F++ D+ ++ L Sbjct: 4 IMLVEDNTLIREAVAGYLQLDGHKTVEFDTGAGVLDAVRREIADLIILDVML--PDGNGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA-------- 113 L + IRA S VP+I ++ S + F+ G DD + KP +E++ RV Sbjct: 62 ALAKSIRAVSAVPIIFLTAKDSESDRILGFELGADDYICKPFSAKELVLRVQALLRRSGG 121 Query: 114 -AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 A + + + + G L E +IL YL N G+ V++ Q Sbjct: 122 SAETVPGASGEWQQGESRATLDTAKHTLAIDGIDVNLTGAEWKILVYLAENSGQVVSREQ 181 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I S + + E V++HI+ LR KL G + + R GY Sbjct: 182 ILSECF-NYFFEGSERTVDTHIANLRAKL----GVGWIVTVRGFGYKF 224 >gi|255325893|ref|ZP_05366985.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Corynebacterium tuberculostearicum SK141] gi|255297105|gb|EET76430.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Corynebacterium tuberculostearicum SK141] Length = 234 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 88/224 (39%), Gaps = 10/224 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + + NS + D ++ G E Sbjct: 10 LVVDDEPNIVELLTVSLKFQDFEVYSANSGNEALRIAREVNPDAYILDVM--MPGMDGFE 67 Query: 63 LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L +R P++ ++ + + G DD V KP E++ R+ I RR Sbjct: 68 LLGKLRQEGLDGPVLYLTAKDGVDQRIHGLTIGADDYVTKPFSLEEVITRLRVIMRRGGA 127 Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + D + GE+ L E +L YLM N+ ++K++I Sbjct: 128 AEESTNDATMSYADLTLNDDTHEVTKAGELIELSPTEFNLLRYLMQNKEVVLSKSKILDN 187 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +D + NVVES+IS LR+K+ + + + R +GY + Sbjct: 188 VW-HYDFGGDGNVVESYISYLRRKI-DTGETQLIHTVRGVGYVL 229 >gi|149377172|ref|ZP_01894921.1| two component transcriptional regulator, winged helix family protein [Marinobacter algicola DG893] gi|149358590|gb|EDM47063.1| two component transcriptional regulator, winged helix family protein [Marinobacter algicola DG893] Length = 228 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 51/221 (23%), Positives = 95/221 (42%), Gaps = 9/221 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L++D +++ + G ++ + + L D+ ++ L LE Sbjct: 6 LLVEDDEELRELLSRYLANQGFTVREAANGQDGLSLALGQHCDLVVLDIML--PDISGLE 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +RA + +P++ ++ + F+ G DD + KP + RE++AR+ A+ RR+ Sbjct: 64 VLRQLRAKTHLPVVLLTARGDETDRIVGFEVGADDYIPKPCNPRELIARLQALLRRVAWD 123 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFP-----LPRRERRILEYLMANRGKRVAKTQIFSAI 177 +P + L E +L+ L+A+ G V KT + Sbjct: 124 QEVGMDDSRAYGDLRVEPVHRRIYQNDVALDLTATEYEVLQVLLAHAGSVVRKTDLMQWA 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 G EA + ++ HIS LRKKL N +++ R LGY Sbjct: 184 LGRRLEAYD-RTLDMHISNLRKKLGND-DPPRIETVRGLGY 222 >gi|157963828|ref|YP_001503862.1| osmolarity response regulator [Shewanella pealeana ATCC 700345] gi|157848828|gb|ABV89327.1| two component transcriptional regulator, winged helix family [Shewanella pealeana ATCC 700345] Length = 241 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 35/229 (15%), Positives = 84/229 (36%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ + G + + E + L + ++ L GE L Sbjct: 8 ILVVDDDMRLRALLERYLMEQGYQVRSAANAEQMDRLLERENFHLLVLDLML--PGEDGL 65 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112 + R +R P++ ++ + + G DD + KP + RE + + Sbjct: 66 SICRRLRQTGNPIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQT 125 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + G + R+ E L E +L+ L+++ + +++ + Sbjct: 126 PEVPGAPTQQEEEITFGEYSLNLATREMHHGEESIALTSGEFAVLKVLVSHPREPLSRDK 185 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + + G D + E ++ +S+LR+ + + + + LGY Sbjct: 186 LMNLARGR-DYSALERSIDVQVSRLRRLIEKDAANPRYIQTVWGLGYVF 233 >gi|148547255|ref|YP_001267357.1| two component transcriptional regulator [Pseudomonas putida F1] gi|148511313|gb|ABQ78173.1| two component transcriptional regulator, winged helix family [Pseudomonas putida F1] Length = 238 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 44/230 (19%), Positives = 91/230 (39%), Gaps = 15/230 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD L++D A +G + ++ E E L +S D+ ++ L G+ L Sbjct: 6 LIVDDDPLIRDLLQAYLSQEGYDVHCADTAERAEALLASQDVDLVLLDIRL--PGKDGLT 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R +R S+V +I ++ + + G DD V KP++ RE+++R + RR++ + Sbjct: 64 LTRELRVRSEVGIILVTGRNDDIDRIVGLECGADDYVIKPLNPRELVSRAKNLIRRVRHA 123 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFP-----------LPRRERRILEYLMANRGKRVAKT 171 L E ++L + N G +++ Sbjct: 124 REAHPAPACAQSLKQFADWALDTDRRRLIDARGGQTLLTHGEFQLLSVFLRNSGHTLSRD 183 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220 Q+ I + + ++ + +LR+KL + + + GY Sbjct: 184 QLMDQIRNR-EWVPNDRSIDVLVGRLRRKLHDDPAEPQLIITIHGTGYLF 232 >gi|325687024|gb|EGD29047.1| DNA-binding response regulator [Streptococcus sanguinis SK72] Length = 238 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 40/220 (18%), Positives = 85/220 (38%), Gaps = 6/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D +++ + G + + + ++ L Sbjct: 14 ILLVEDDPVIRQMIKKMLEQWGFQVVAVEDFMDVLTVFVREEPHLVLMDIGLPL--FNGY 71 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 + IR S VP++ +S + + G DD V KP + LA+V Sbjct: 72 HWCQEIRKISTVPIMFLSSRDQSMDIVMAINMGADDYVTKPFDNNVFLAKVQGLLRRSYE 131 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + E + + D G+V L + E +IL L + VA+ + ++ Sbjct: 132 FGNDQSLLEYQGVILNLKSTDLVFDGKVVTLTKNEFQILRVLFEHADGIVARDDLMKELW 191 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 D +++N + ++++LRKKL + +++K+ +GY Sbjct: 192 -NSDFFIDDNTLSVNVARLRKKLEEHGLKNFIETKKGIGY 230 >gi|299138867|ref|ZP_07032044.1| two component transcriptional regulator, winged helix family [Acidobacterium sp. MP5ACTX8] gi|298599021|gb|EFI55182.1| two component transcriptional regulator, winged helix family [Acidobacterium sp. MP5ACTX8] Length = 227 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 90/224 (40%), Gaps = 7/224 (3%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + ++I+D ++ F +G + + R ++ L G Sbjct: 3 LILVIEDDPRIQRALKRQFTAEGYEVHIEGEGPAGLTACKNMRPATVVLDLML--PGLSG 60 Query: 61 LELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYR 117 E+ + I+A S P+I +S + + ++G DD V KP RE+ + A Sbjct: 61 REVCKEIKAWSPDTPVIILSAISEVADKVLLLETGADDYVTKPFSPRELLARVQAAMRRT 120 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 R V G + V + G + PL E ++L + + N G+ +A+ ++ S + Sbjct: 121 RRTVQEPPLNFGNVTVDFLKMEVYKAGSLVPLTAHEFKLLRFFLDNPGRAIARDELLSGV 180 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 +GL + + V++ I KLR+KL + + GY Sbjct: 181 WGL-NFHLTTRTVDNQILKLRQKLEADPANPVHFRTVHGFGYKF 223 >gi|269960945|ref|ZP_06175315.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269834385|gb|EEZ88474.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 229 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 41/226 (18%), Positives = 96/226 (42%), Gaps = 9/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G ++ + +S D+ ++ L Sbjct: 3 LLIVEDEVKAGEYLQKGLVESGYVVDWVRDGVDGLYHATSEPYDLILLDIML--PKLDGW 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ +R+ P+I ++ ++ + F+ G +D V KP E+LAR+ ++R Sbjct: 61 QVLNTLRSSDIHTPVIMLTAKEQIEDRVRGFELGANDYVVKPYAFAELLARIQNVFRHHT 120 Query: 121 VSNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 S + + +++ R G+ L +E +LE LM G+ +++T I S Sbjct: 121 SSRVQTSSQTLQIADLELDMMKRVATRGGQSITLTAKEYALLELLMRKEGQVLSRTTIAS 180 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ + + + NV++ I +LR K+ + + R +GY ++ Sbjct: 181 LVWDM-NFDSDTNVIDVAIKRLRNKVDKPFETPLIHTIRGMGYKLE 225 >gi|239638181|ref|ZP_04679133.1| heme response regulator HssR [Staphylococcus warneri L37603] gi|239596202|gb|EEQ78747.1| heme response regulator HssR [Staphylococcus warneri L37603] Length = 224 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 45/220 (20%), Positives = 96/220 (43%), Gaps = 4/220 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + + + + E + D++ ++ + G E Sbjct: 5 LIVDDDPKILNYVVTHLEKEHFYTYTHTNGEEALHFLDNHPVDIAIVDIMMH--GMDGFE 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L +I+ +P+I ++ +L F SG DD + KP +E++ R+ A+ RR + Sbjct: 63 LCHMIKEVYDLPVIMLTARDALSDKERAFISGTDDYLTKPFEVKELIYRIKAVLRRYHIH 122 Query: 123 NNRAETGPIRVFSDGRDPEV-QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + T V G+ LP +E ++L L +N + ++T + I+G + Sbjct: 123 ADETLTIGNLTLHQAYMEVVVNGKTMTLPNKEFQLLFLLASNEKQIFSRTHLIEKIWG-Y 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D +E ++ HI +LR++L+ + + R GY ++ Sbjct: 182 DYEGDERTIDVHIKRLRQRLQQLDSDVTIKTVRGQGYKVE 221 >gi|226324729|ref|ZP_03800247.1| hypothetical protein COPCOM_02515 [Coprococcus comes ATCC 27758] gi|225207177|gb|EEG89531.1| hypothetical protein COPCOM_02515 [Coprococcus comes ATCC 27758] Length = 235 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 39/231 (16%), Positives = 85/231 (36%), Gaps = 15/231 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D +++G G + + ++ ++ + Sbjct: 7 LVVEDDKEIREGVEIYLKSQGYEVFQAADGIEGLEVIEKEEIHLAIVDIM--MPRMDGIR 64 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + +R P+I +S + + G DD V KP E+LARV + RR ++ Sbjct: 65 MTMKLREKYDFPVIMLSAKSEEVDKIMGLNIGADDYVTKPFTPMELLARVNSQLRRYRMF 124 Query: 123 NNRAETGPIRVFSD----------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + V GE L E +IL LM + G+ + + Sbjct: 125 AEKLRDREENQNIHVIGGLELNEATVEVSVDGEPVRLTPIEYKILLLLMKSPGRVFSAEE 184 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDW 222 I+ ++ ++A+ + + HI +R+K+ + + +GY I+ Sbjct: 185 IYERVWN--EKAINTDTIMVHIRNIREKIESCPKEPKYLKVVWGVGYKIEK 233 >gi|23501499|ref|NP_697626.1| DNA-binding response regulator [Brucella suis 1330] gi|62289574|ref|YP_221367.1| DNA-binding response regulator [Brucella abortus bv. 1 str. 9-941] gi|148560055|ref|YP_001258605.1| DNA-binding response regulator [Brucella ovis ATCC 25840] gi|161618587|ref|YP_001592474.1| transcriptional activator protein copR [Brucella canis ATCC 23365] gi|225627119|ref|ZP_03785157.1| Transcriptional activator protein copR [Brucella ceti str. Cudo] gi|254688895|ref|ZP_05152149.1| transcriptional activator protein copR [Brucella abortus bv. 6 str. 870] gi|254693376|ref|ZP_05155204.1| transcriptional activator protein copR [Brucella abortus bv. 3 str. Tulya] gi|254697027|ref|ZP_05158855.1| transcriptional activator protein copR [Brucella abortus bv. 2 str. 86/8/59] gi|254701406|ref|ZP_05163234.1| transcriptional activator protein copR [Brucella suis bv. 5 str. 513] gi|254703951|ref|ZP_05165779.1| transcriptional activator protein copR [Brucella suis bv. 3 str. 686] gi|254707671|ref|ZP_05169499.1| transcriptional activator protein copR [Brucella pinnipedialis M163/99/10] gi|254709746|ref|ZP_05171557.1| transcriptional activator protein copR [Brucella pinnipedialis B2/94] gi|254713749|ref|ZP_05175560.1| transcriptional activator protein copR [Brucella ceti M644/93/1] gi|254717193|ref|ZP_05179004.1| transcriptional activator protein copR [Brucella ceti M13/05/1] gi|254718761|ref|ZP_05180572.1| transcriptional activator protein copR [Brucella sp. 83/13] gi|254729926|ref|ZP_05188504.1| transcriptional activator protein copR [Brucella abortus bv. 4 str. 292] gi|256031236|ref|ZP_05444850.1| transcriptional activator protein copR [Brucella pinnipedialis M292/94/1] gi|256060744|ref|ZP_05450908.1| transcriptional activator protein copR [Brucella neotomae 5K33] gi|256159339|ref|ZP_05457129.1| transcriptional activator protein copR [Brucella ceti M490/95/1] gi|256254644|ref|ZP_05460180.1| transcriptional activator protein copR [Brucella ceti B1/94] gi|256257143|ref|ZP_05462679.1| transcriptional activator protein copR [Brucella abortus bv. 9 str. C68] gi|256369051|ref|YP_003106559.1| DNA-binding response regulator [Brucella microti CCM 4915] gi|260168372|ref|ZP_05755183.1| DNA-binding response regulator [Brucella sp. F5/99] gi|260566800|ref|ZP_05837270.1| transcriptional regulatory protein [Brucella suis bv. 4 str. 40] gi|260754380|ref|ZP_05866728.1| two component transcriptional regulator [Brucella abortus bv. 6 str. 870] gi|260757599|ref|ZP_05869947.1| two component transcriptional regulator [Brucella abortus bv. 4 str. 292] gi|260761425|ref|ZP_05873768.1| two component transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59] gi|260883405|ref|ZP_05895019.1| two component transcriptional regulator [Brucella abortus bv. 9 str. C68] gi|261213626|ref|ZP_05927907.1| two component transcriptional regulator [Brucella abortus bv. 3 str. Tulya] gi|261219009|ref|ZP_05933290.1| two component transcriptional regulator [Brucella ceti M13/05/1] gi|261221819|ref|ZP_05936100.1| two component transcriptional regulator [Brucella ceti B1/94] gi|261315167|ref|ZP_05954364.1| two component transcriptional regulator [Brucella pinnipedialis M163/99/10] gi|261317277|ref|ZP_05956474.1| two component transcriptional regulator [Brucella pinnipedialis B2/94] gi|261321491|ref|ZP_05960688.1| two component transcriptional regulator [Brucella ceti M644/93/1] gi|261324734|ref|ZP_05963931.1| two component transcriptional regulator [Brucella neotomae 5K33] gi|261751945|ref|ZP_05995654.1| two component transcriptional regulator [Brucella suis bv. 5 str. 513] gi|261754603|ref|ZP_05998312.1| two component transcriptional regulator [Brucella suis bv. 3 str. 686] gi|261757832|ref|ZP_06001541.1| transcriptional regulatory protein [Brucella sp. F5/99] gi|265983739|ref|ZP_06096474.1| two component transcriptional regulator [Brucella sp. 83/13] gi|265988315|ref|ZP_06100872.1| two component transcriptional regulator [Brucella pinnipedialis M292/94/1] gi|265997783|ref|ZP_06110340.1| two component transcriptional regulator [Brucella ceti M490/95/1] gi|294851980|ref|ZP_06792653.1| two-component system protein [Brucella sp. NVSL 07-0026] gi|297247989|ref|ZP_06931707.1| two-component system, OmpR family, response regulator [Brucella abortus bv. 5 str. B3196] gi|306838737|ref|ZP_07471572.1| DNA-binding response regulator [Brucella sp. NF 2653] gi|306842118|ref|ZP_07474787.1| DNA-binding response regulator [Brucella sp. BO2] gi|306845218|ref|ZP_07477794.1| DNA-binding response regulator [Brucella sp. BO1] gi|23347405|gb|AAN29541.1| DNA-binding response regulator [Brucella suis 1330] gi|62195706|gb|AAX74006.1| DNA-binding response regulator [Brucella abortus bv. 1 str. 9-941] gi|148371312|gb|ABQ61291.1| DNA-binding response regulator [Brucella ovis ATCC 25840] gi|161335398|gb|ABX61703.1| Transcriptional activator protein copR [Brucella canis ATCC 23365] gi|225617954|gb|EEH14998.1| Transcriptional activator protein copR [Brucella ceti str. Cudo] gi|255999211|gb|ACU47610.1| DNA-binding response regulator [Brucella microti CCM 4915] gi|260156318|gb|EEW91398.1| transcriptional regulatory protein [Brucella suis bv. 4 str. 40] gi|260667917|gb|EEX54857.1| two component transcriptional regulator [Brucella abortus bv. 4 str. 292] gi|260671857|gb|EEX58678.1| two component transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59] gi|260674488|gb|EEX61309.1| two component transcriptional regulator [Brucella abortus bv. 6 str. 870] gi|260872933|gb|EEX80002.1| two component transcriptional regulator [Brucella abortus bv. 9 str. C68] gi|260915233|gb|EEX82094.1| two component transcriptional regulator [Brucella abortus bv. 3 str. Tulya] gi|260920403|gb|EEX87056.1| two component transcriptional regulator [Brucella ceti B1/94] gi|260924098|gb|EEX90666.1| two component transcriptional regulator [Brucella ceti M13/05/1] gi|261294181|gb|EEX97677.1| two component transcriptional regulator [Brucella ceti M644/93/1] gi|261296500|gb|EEX99996.1| two component transcriptional regulator [Brucella pinnipedialis B2/94] gi|261300714|gb|EEY04211.1| two component transcriptional regulator [Brucella neotomae 5K33] gi|261304193|gb|EEY07690.1| two component transcriptional regulator [Brucella pinnipedialis M163/99/10] gi|261737816|gb|EEY25812.1| transcriptional regulatory protein [Brucella sp. F5/99] gi|261741698|gb|EEY29624.1| two component transcriptional regulator [Brucella suis bv. 5 str. 513] gi|261744356|gb|EEY32282.1| two component transcriptional regulator [Brucella suis bv. 3 str. 686] gi|262552251|gb|EEZ08241.1| two component transcriptional regulator [Brucella ceti M490/95/1] gi|264660512|gb|EEZ30773.1| two component transcriptional regulator [Brucella pinnipedialis M292/94/1] gi|264662331|gb|EEZ32592.1| two component transcriptional regulator [Brucella sp. 83/13] gi|294820569|gb|EFG37568.1| two-component system protein [Brucella sp. NVSL 07-0026] gi|297175158|gb|EFH34505.1| two-component system, OmpR family, response regulator [Brucella abortus bv. 5 str. B3196] gi|306274377|gb|EFM56184.1| DNA-binding response regulator [Brucella sp. BO1] gi|306287705|gb|EFM59136.1| DNA-binding response regulator [Brucella sp. BO2] gi|306406224|gb|EFM62468.1| DNA-binding response regulator [Brucella sp. NF 2653] Length = 235 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 47/222 (21%), Positives = 86/222 (38%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D F + G S + E L + DV ++ L L Sbjct: 3 ILVIEDDREAARYLEKAFAEAGHSADIAGDGETGYALAENGNYDVLVVDRML--PKRDGL 60 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118 + +RA P++ +S + + +G DD + KP E+ V Sbjct: 61 SVVAGLRAKGMETPVLILSALGEVDDRVTGLRAGGDDYLTKPYAFSELLARVEVLQRRSS 120 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + ++ G + + Q L RE R+LEYLM + G+ V +T + ++ Sbjct: 121 PREADTIYRVGDLELDRLAHTARRQSVDITLQPREFRLLEYLMRHAGQVVTRTMLLENVW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + NV++ HIS+LR K+ + + R GY + Sbjct: 181 D-YHFDPQTNVIDVHISRLRSKIEKGFDEPLLHTVRGAGYML 221 >gi|330899231|gb|EGH30650.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. japonica str. M301072PT] Length = 230 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 43/223 (19%), Positives = 87/223 (39%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD ++ G + + + + D+ ++ L Sbjct: 7 ILVIDDEPQIRKFLRISLVSQGYKVLEAATGAEGLTQAALNKPDLLVLDLGL--PDMDGQ 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 ++ R S VP++ +S S + D+G +D V KP +E LAR+ Sbjct: 65 QVLSEFREWSAVPVLVLSVRASEAQKVQALDAGANDYVTKPFGIQEFLARIRALLRQASG 124 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + E GP+ V R + G L R+E +L L + G+ + + Q+ I+ Sbjct: 125 SEKPESALEFGPLTVDLAYRRVLLDGLEVALTRKEYAVLAQLARHPGRVITQQQLLKDIW 184 Query: 179 GLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220 G + + + + LR+KL + + ++ +GY + Sbjct: 185 GPTHTE-DSHYLRIVVGHLRQKLADDPTAPRFILTEPGIGYRL 226 >gi|327479451|gb|AEA82761.1| DNA-binding response regulator [Pseudomonas stutzeri DSM 4166] Length = 219 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 52/223 (23%), Positives = 97/223 (43%), Gaps = 9/223 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + +G +G +++ + ++ ++ L L Sbjct: 3 ILLVEDDRALGEGIRTALKPEGYTVDWLQDGASALHALNHESFELVILDLGL--PRLDGL 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119 EL + +RA P++ ++ + + D+G DD + KP E+ AR+ A + R Sbjct: 61 ELLKRLRAAGNPVPVLVLTARDATSDRIAGLDAGADDYLVKPFDVAELKARLRALLRRSF 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 E I + + QG LPR+E +L L+A G+ + + ++ +YG Sbjct: 121 NRPEPVLEYRGILLDPVNQQVSYQGTPINLPRKEFVLLHELLAQPGRVLTRDRLQQVLYG 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +DE VE N +E HI LRKK + + + R +GY +D Sbjct: 181 -WDEDVESNALEVHIHHLRKKFF----PELIRTVRGVGYLVDK 218 >gi|325847051|ref|ZP_08169877.1| putative sensory transduction protein RegX3 [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481023|gb|EGC84068.1| putative sensory transduction protein RegX3 [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 219 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 54/221 (24%), Positives = 96/221 (43%), Gaps = 6/221 (2%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 M +++D +++ + + ++GF L D+ ++ L + Sbjct: 1 MIYVVEDDKAIRNLVLYALSEKDYQVKGFEDGLDIVELVRKESVDLLILDVML--PEKDG 58 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119 LE+ + IR S +P+I ++ + +SG DD + KP E+++RV A+ R Sbjct: 59 LEILKEIREFSSIPIIMLTARDGEYDKVMGLESGADDYITKPFSILELISRVKAVLRRSE 118 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 K G I + R +V GE L +E +L MAN G + + I+G Sbjct: 119 KKDREHLNYGSIEINIKKRTVKVDGEKIDLTFKEFEMLLLFMANIGNVITREDFLLKIWG 178 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D E V+ HI+ LR KL++ + + R LGY + Sbjct: 179 -YDYEGETRTVDVHIASLRNKLKSAGEN--IKTVRNLGYKL 216 >gi|239945362|ref|ZP_04697299.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239991818|ref|ZP_04712482.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] Length = 220 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 44/221 (19%), Positives = 84/221 (38%), Gaps = 6/221 (2%) Query: 5 IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64 +D V+ +G + G ++ D ++ L + Sbjct: 2 AEDEPDVRAAVEDGLSVEGYEVRGVGDGLAALSAVTAWEPDALVLDVM--MPALDGLAVC 59 Query: 65 RIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRLKV 121 R +RA + P++ ++ S+ +D ++G DD + KP E++ARV A Sbjct: 60 RRLRAMEDRTPVLVLTALSSVSERVDGLEAGADDYLVKPFALDELVARVRALLRRAAPPA 119 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + + R G R E +LE L+ + G+ +A+ I ++G Sbjct: 120 PDEDLAFADLTLDPVTRTGRRGGRPVEFSRTEAALLELLLRHPGQVLAREVILERVWGQ- 178 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 D + N + ++ LR+KL V + LGY +D Sbjct: 179 DFGPDSNSLAVYVGYLRRKLEAGGEPRLVHTVHGLGYRLDV 219 >gi|257064074|ref|YP_003143746.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Slackia heliotrinireducens DSM 20476] gi|256791727|gb|ACV22397.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Slackia heliotrinireducens DSM 20476] Length = 225 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 48/223 (21%), Positives = 93/223 (41%), Gaps = 5/223 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + + +G + + + + D ++ L G+ Sbjct: 4 LIVEDDPNIAEYLRKSLESEGFTTDVAYDGPTGFDMALANPYDAITLDIIL--PGKNGYT 61 Query: 63 LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + +R P++ ++ D FD+G DD + KP +LAR+ A+ RR V Sbjct: 62 VCKELRDSGVTTPILMLTAKDGEYDEADAFDTGADDFLRKPFSLVVLLARLRALVRRGGV 121 Query: 122 SNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + + + G L RE +LE L+ N G + K + ++G Sbjct: 122 AKGSVLKASDLMLDTRTKRVTRAGREIELTPREFALLELLLMNAGNALPKQLLLERVWG- 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 + +ENVVE +IS LR+K+ + + R +GY ID + Sbjct: 181 YAILADENVVEVYISYLRRKVDAPFDKKLIRTVRGVGYCIDKD 223 >gi|262201296|ref|YP_003272504.1| response regulator receiver [Gordonia bronchialis DSM 43247] gi|262084643|gb|ACY20611.1| response regulator receiver [Gordonia bronchialis DSM 43247] Length = 223 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 46/220 (20%), Positives = 88/220 (40%), Gaps = 5/220 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD V + DG ++ + W + DV ++ L G Sbjct: 4 LVVDDDPGVAETVRRALVSDGWAVTVAHDGVDGLWKATEGSHDVIVLDIML--PGHNGYV 61 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-ARVAAIYRRLK 120 + R +RA P++ ++ + D+G DD + KP + A + R ++ Sbjct: 62 VVRELRARGIWTPVVMLTAKDGEYDQAEALDAGADDYLVKPFSVVVLKAHLRALLRRGVR 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 R G + V L RE +LEYL+ N V+K +I +++ Sbjct: 122 ERPARLVAGDLVVDPAEHTVTRGQTPITLTPREFAVLEYLIRNADTVVSKCEIVRSVWDE 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + N+VE ++ LRK++ G +++ R GY + Sbjct: 182 -NFDGDANIVEVYVGYLRKRIDTPFGKRSIETVRGAGYRL 220 >gi|225377346|ref|ZP_03754567.1| hypothetical protein ROSEINA2194_02994 [Roseburia inulinivorans DSM 16841] gi|225210877|gb|EEG93231.1| hypothetical protein ROSEINA2194_02994 [Roseburia inulinivorans DSM 16841] Length = 240 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 42/232 (18%), Positives = 85/232 (36%), Gaps = 15/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++DG G + + ++ ++ + Sbjct: 11 ILVVEDDKEIRDGIEIFLKSQGYHVYKAADGVEGLQIIEKEPIHLAIVDIM--MPRMDGV 68 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + +R H + P+I +S + + G DD V KP E++ARV + RR Sbjct: 69 TMTIKLREHHEFPVIMLSAKSEETDKVIGLNIGADDYVTKPFTPLELMARVNSQLRRYTR 128 Query: 122 SNNRAETGPIRV----------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 A+ D + V G L E +IL LM N G+ + Sbjct: 129 FMGMAQKKEEEGRNYVIGGLELNEDTIEFSVDGNPVKLTPIEFKILALLMRNPGRVFSTE 188 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 +I+ ++ ++A+ + + H+ +R K+ N + +GY I+ Sbjct: 189 EIYERVWN--EKAINTDTIMVHVRNIRDKIEINPREPKYLKVVWGVGYKIEK 238 >gi|58583493|ref|YP_202509.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|58428087|gb|AAW77124.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae KACC10331] Length = 281 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 45/227 (19%), Positives = 95/227 (41%), Gaps = 12/227 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD ++ G ++ ++ + + R D+ ++ GE L Sbjct: 51 LVVDDDPDLRKLIGEFLSAHGYQVDMAENVAEMRSVMAQRRPDLIVLDVM--MPGEDGLS 108 Query: 63 LPRIIRAHSQVP-LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 R + + P +I +S + + + G DD + KP + E+LARV A+ RR + Sbjct: 109 AARTLASERGSPAVIMLSALGNDTDRIIGLEVGADDYLAKPCNPHELLARVRALLRRSQS 168 Query: 122 SNNRAETGPIRVFSDGRD--------PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 SN +++ G + G L E +L + + + +++ Q+ Sbjct: 169 SNEQSDQRGNVYEFAGWRLDVVRRDLRDPTGIFINLSDGEFALLRTFVEHPQRVLSRDQL 228 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G D V + ++S IS+LR+K+ ++ + + + R GY + Sbjct: 229 LECARGR-DTDVYDRAIDSQISRLRRKINERVHTELIRTVRNEGYML 274 >gi|312959933|ref|ZP_07774448.1| putative two component response regulator transcription regulator protein [Pseudomonas fluorescens WH6] gi|311285880|gb|EFQ64446.1| putative two component response regulator transcription regulator protein [Pseudomonas fluorescens WH6] Length = 263 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 41/227 (18%), Positives = 80/227 (35%), Gaps = 13/227 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++ +D + D A G L + D+ ++ Sbjct: 37 LIAEDEPEIADILTAYLKRAGFRTAHAQDGRRALELHQLLKPDLVLLDVM--MPKLDGWM 94 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + +R +I ++ + L G DD + KP + E++AR+ A+ RR Sbjct: 95 VLAELRHRGNTAVIMLTAHDQDMDKLMGLRIGADDYIVKPFNPAEVIARIQAVLRRCGDQ 154 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPL---------PRRERRILEYLMANRGKRVAKTQI 173 A+ +RV + D + + E ++L L + ++ ++ Sbjct: 155 GQGADHRVLRVDAFEIDIDNHEVNVHIGTQKQPLYLTVTEFKLLAQLAKAPRRVFSRAEL 214 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + E V+SHISKLR+K+ + S R +GY Sbjct: 215 L--VLCSPESDSLERTVDSHISKLRRKIEDLGLHGVPSSIRGVGYRF 259 >gi|237734077|ref|ZP_04564558.1| signal transduction regulator [Mollicutes bacterium D7] gi|229382903|gb|EEO32994.1| signal transduction regulator [Coprobacillus sp. D7] Length = 229 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 47/220 (21%), Positives = 95/220 (43%), Gaps = 6/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++D +++ +G + F++ ++ + L + Sbjct: 7 IFVVEDDENIREIINLALVSNGYEVVQFDNAIDALAEIDKKAPSLAIFDLML--PKMSGI 64 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + + IR S++P++ +S ++ DSG DD + KP E+ ARV ++ RR Sbjct: 65 DAIKEIRETDSELPILILSAKDREIDKVNGLDSGSDDYMTKPFGILELQARVRSLLRRHV 124 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 S+ V R ++ + L +E ++L YLM N+ + V + ++ + I+G Sbjct: 125 TSDIIRTKHL-TVDKQTRLVKLDDQKLELTNKEYQLLVYLMDNKHRVVEREELLNEIWG- 182 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D E ++ HI LR KL + G + + R +GY Sbjct: 183 YDFIGESRALDVHIRALRSKLNDD-GHKYIKTIRSVGYRF 221 >gi|229126083|ref|ZP_04255105.1| Two-component response regulator [Bacillus cereus BDRD-Cer4] gi|229143378|ref|ZP_04271809.1| Two-component response regulator [Bacillus cereus BDRD-ST24] gi|228640185|gb|EEK96584.1| Two-component response regulator [Bacillus cereus BDRD-ST24] gi|228657405|gb|EEL13221.1| Two-component response regulator [Bacillus cereus BDRD-Cer4] Length = 242 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 43/220 (19%), Positives = 75/220 (34%), Gaps = 6/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L+DD + + G + S E + ++ Sbjct: 21 ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENQNFKFVLLDIM--MPKMDGW 78 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E + IR+ S +P+I ++ + G DD V KP H E+ R Sbjct: 79 ETCKKIRSFSNIPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEEL-FARIEAVLRRTN 137 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + + I V E L E +L + + + + Q+ I+GL Sbjct: 138 EHKQIQYHGIVWDETKHFVSVHNEELLLTPIEFSLLGLFLRHVNYVLNRDQLIERIWGL- 196 Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219 + E+ V+SHI LR KLR + + +GY Sbjct: 197 NTNTEDRTVDSHIRNLRDKLRKANFPIDHHLKTVYGVGYR 236 >gi|110833573|ref|YP_692432.1| DNA-binding response regulator [Alcanivorax borkumensis SK2] gi|110646684|emb|CAL16160.1| DNA-binding response regulator [Alcanivorax borkumensis SK2] Length = 240 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 43/226 (19%), Positives = 93/226 (41%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + D +G+ + + E + + D+ ++ L G L Sbjct: 11 IMIVEDDERLADLTCEYLQSNGLGVTVVSDGEEAIRRIRADQPDLVVLDLML--PGADGL 68 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA------AI 115 + R +R+ + P++ ++ + + G DD V KP+ R +LAR+ Sbjct: 69 TVCREVRSAYKNPILMLTARTDDMDQVLGLEMGADDYVAKPVKPRVLLARIRALLRRVET 128 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 S R E G + + + R+ + G+ L E +L L +N G +++ IF Sbjct: 129 DSERDNSPARLEFGALVIDNSAREVTLAGDSVDLTSAEYDLLWLLASNAGTVLSRETIFE 188 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 + G+ ++ ++ IS++R K+ + + + R GY Sbjct: 189 KLRGI-QYDGQDRSIDVRISRIRPKVGDDPENPKRIKTVRSKGYLF 233 >gi|77745283|gb|ABB02542.1| response regulator [Lactobacillus reuteri] Length = 229 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 42/227 (18%), Positives = 90/227 (39%), Gaps = 9/227 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + ++G + ++ D+ I L+ + Sbjct: 3 ILVVDDDKEIVQLLEIYIRNEGYEPISAYDGKKALTKLNTN-PDIGLIILDLMMPEIDGM 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + +R S +P++ +S P+ + +G DD V KP + E++ARV ++ RR + Sbjct: 62 DVIKRVRKDSDIPILVLSAKPADMDKIQGLITGADDYVTKPFNPLEVMARVKSLLRRSQG 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQG------EVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + V + + +V L E IL L ++ + + IF Sbjct: 122 EVTNDQPHILNVGPLLINKDSHEVKTIKGDVIQLTALEFGILYLLASHPNRVFSADDIFE 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 ++ + V V H+S LR K+ G + + +GY ++ Sbjct: 182 RVW-QQESVVSAKTVMVHVSHLRDKIEEATNGEKVIQTVWGVGYKVE 227 >gi|322805710|emb|CBZ03275.1| two-component response regulator YvcP [Clostridium botulinum H04402 065] Length = 233 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 41/227 (18%), Positives = 85/227 (37%), Gaps = 10/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + G + + ++ ++ L Sbjct: 5 IMIIEDDKNIARLLGEHIEKYGYEALVAKDFKKILETFEIEKPNLILLDINL--PKFDGY 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 R IR S P+I IS S + +SG DD + KP ++ +LA++ + RR+ Sbjct: 63 YWCRRIREKSLCPIIFISARDSEMNQVMAIESGADDYITKPFYYEVVLAKIKSQLRRVYG 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRI-------LEYLMANRGKRVAKTQIF 174 + +G + +E + L+ +M + + ++ Sbjct: 123 DYAANSQMERILDVEGLLFYPERLQVHFTGKETMLSKKEGDLLDAMMKIYPRVATREELL 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 I+ V+EN + +I++LRKKL + D +++ R GY ++ Sbjct: 183 EKIWDDTTF-VDENTLNVNIARLRKKLLDLGIKDSIETVRGAGYRLN 228 >gi|306832962|ref|ZP_07466094.1| response regulator [Streptococcus bovis ATCC 700338] gi|304424861|gb|EFM27995.1| response regulator [Streptococcus bovis ATCC 700338] Length = 232 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 43/227 (18%), Positives = 86/227 (37%), Gaps = 8/227 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++IDD + + +S N L + S + ++ + Sbjct: 5 LIIDDDKELCALMKKCIEQEEMSALVANGGTEGLRLIDENKNLFSLVILDVMMPDIDGFQ 64 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL------ARVAAIY 116 + IR S +P++ ++ + G DD + KP +E++ R Sbjct: 65 VLEKIRETSNIPVLMLTAKSGEDDKVFGLRLGADDYLTKPFSIKELMARVNSLIRRYTTL 124 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + +++ R V L +E +L +L +N+G+ K QI++ Sbjct: 125 NPTFAEEDCITLKGMKIDKVNRTVLVNNISVELTSKEFDLLTFLASNKGRIFTKKQIYTQ 184 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDW 222 ++ D A ++N + S ISKLRKK+ + + R +GY + Sbjct: 185 VW-KDDYAFDDNNIMSFISKLRKKIEADPEHPFYILTIRGVGYRFNK 230 >gi|302387482|ref|YP_003823304.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] gi|302198110|gb|ADL05681.1| two component transcriptional regulator, winged helix family [Clostridium saccharolyticum WM1] Length = 231 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 42/228 (18%), Positives = 85/228 (37%), Gaps = 10/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD + + + + S + + ++ G Sbjct: 5 ILVIDDDKELCALIKQSVAVESIDADHCYSGTDGLAMLQKNDYQLILLDVM--MPGLDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL------ARVAAI 115 + IR S VP++ ++ + + SG DD + KP E++ R Sbjct: 63 QTMEKIRQKSSVPILMLTSKNDSTSKIRGLRSGADDYLTKPFDMDELIARVVSLIRRYTR 122 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + + + D R Q F LP +E +L + N+GK + K QI+ Sbjct: 123 FNTTGDHSQPLTYQGLTIDMDSRSVTTQNGTFELPPKEFDLLLFCAKNQGKILTKQQIYE 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDW 222 ++G + N + + IS+LRKK+ + + + + +GY + Sbjct: 183 EVWGESYVYDDSN-IMAIISRLRKKIESDSSAPYYIQTVKGIGYRFNK 229 >gi|302876997|ref|YP_003845630.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] gi|307687688|ref|ZP_07630134.1| two component transcriptional regulator, winged helix family protein [Clostridium cellulovorans 743B] gi|302579854|gb|ADL53866.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] Length = 231 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 49/225 (21%), Positives = 87/225 (38%), Gaps = 10/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + + + +G + G S + D+ ++ L G Sbjct: 8 LIVEDDIDINELLCNILIKEGYRVRGAYSGSEAKMCLEQFDYDIVLLDLML--PGICGEN 65 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAIY 116 L IR +P+I IS + ++ G DD V+KP E+ R + Sbjct: 66 LIAEIRKVKVMPIIVISAKTAQGDKINVLKLGADDFVSKPFDIYEVVARVEAQLRRYKEF 125 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 K +NR I + D R+ V+ + L RE ILE LM N K + IF Sbjct: 126 SNSKEESNRLIYKNITLDLDAREAFVKDKQLSLTFREFEILELLMKNPKKVFTRANIFQT 185 Query: 177 IYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220 ++ + ++N + H+S LR KL + + +G+ Sbjct: 186 VW-NDEFLGDDNTINVHMSNLRSKLSEVDSETKYIQTVWGIGFKF 229 >gi|257066862|ref|YP_003153118.1| two component transcriptional regulator, winged helix family [Anaerococcus prevotii DSM 20548] gi|256798742|gb|ACV29397.1| two component transcriptional regulator, winged helix family [Anaerococcus prevotii DSM 20548] Length = 219 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 48/221 (21%), Positives = 93/221 (42%), Gaps = 6/221 (2%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 M +++D +++ + G + G+ + ++ ++ L K Sbjct: 1 MIYVVEDDKSIRNLVEYALREKGYEVAGYEDGSQIVSDVKDSPGELLILDIMLPEK--DG 58 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119 + + + IR S +P+I ++ + D G DD + KP E+++RV A+ R Sbjct: 59 ITILKEIREFSDIPIIMLTARTDEFDKVMGLDLGADDYITKPFSILELISRVKAVLRRSK 118 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 K + +R+ R +V G L +E +L M+N G + + ++G Sbjct: 119 KKDTDHISYKEVRLNMKKRSVKVDGVKIDLTYKEFEMLLLFMSNIGNVITRDDFLLKVWG 178 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D E V+ HI+ LR KL+N +++ R LGY Sbjct: 179 -YDYEGETRTVDVHIASLRAKLKNAG--KYIETVRNLGYKF 216 >gi|212637546|ref|YP_002314071.1| osmolarity response regulator [Shewanella piezotolerans WP3] gi|212559030|gb|ACJ31484.1| Response regulator receiver:Transcriptional regulatory protein [Shewanella piezotolerans WP3] Length = 241 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 35/229 (15%), Positives = 84/229 (36%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ + G + + E + L + ++ L GE L Sbjct: 8 ILVVDDDMRLRALLERYLMEQGYQVRSAANAEQMDRLLERENFHLLVLDLML--PGEDGL 65 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112 + R +R P++ ++ + + G DD + KP + RE + + Sbjct: 66 SICRRLRQVGNPIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQT 125 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + G + R+ E L E +L+ L+++ + +++ + Sbjct: 126 PEVPGAPTQQEEEITFGEFSLNLATREMHHGEEAIALTSGEFAVLKVLVSHPREPLSRDK 185 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + + G D + E ++ +S+LR+ + + + + LGY Sbjct: 186 LMNLARGR-DYSALERSIDVQVSRLRRLIEVDAANPRYIQTVWGLGYVF 233 >gi|148927641|ref|ZP_01811100.1| two component transcriptional regulator, winged helix family [candidate division TM7 genomosp. GTL1] gi|147887013|gb|EDK72522.1| two component transcriptional regulator, winged helix family [candidate division TM7 genomosp. GTL1] Length = 225 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 44/224 (19%), Positives = 96/224 (42%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + +++ + E D+ ++ L G L Sbjct: 3 ILVVEDERKIALALKKGLEQEAFAVDVVHDGESGLSYAEDDSYDLIVLDRML--PGLDGL 60 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R +R + P+I ++ ++ + D+G DD + KP E+LAR+ ++ RR + Sbjct: 61 EICRQLRESGAKTPIIMLTAKDRIRDRVTGLDAGADDYLVKPFAFEELLARIRSLLRRPQ 120 Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + + + L ++E +LEYLM ++G+ V K I + ++ Sbjct: 121 DLLGEVLQIGDLTLNTITYEVKRGTTPVSLTQKEFALLEYLMRSQGRVVTKDMILNHVWD 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYSID 221 +D + N +E +I LR K+ + ++R GY ++ Sbjct: 181 -YDADILPNTIEVYIGYLRSKVERPFEGHPRLIHTQRGFGYKME 223 >gi|72160747|ref|YP_288404.1| response regulator receiver [Thermobifida fusca YX] gi|71914479|gb|AAZ54381.1| response regulator receiver [Thermobifida fusca YX] Length = 232 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 46/225 (20%), Positives = 85/225 (37%), Gaps = 10/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++ DD +++ +G S D+ ++ G L Sbjct: 8 LIADDDRAIRESLERALQLEGYQTRTAADGVETLAAVHSDPVDLLILDVM--MPGVDGLG 65 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIH------HREILARVAAI 115 + R++RA P++ ++ + D+G DD + KP L R AA Sbjct: 66 VCRVLRAEGDRTPILMLTARVETSDRVAGLDAGADDYLPKPFELDELLARIRALLRRAAP 125 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + G +R+ R G L + E +LE L N G + + I+ Sbjct: 126 TTGEGAAEPLIQVGDLRIDPGARRVWRAGREVELSKTEFDLLELLARNAGIVLDHSTIYD 185 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I+G +D E + +IS LR+KL + + + R +GY++ Sbjct: 186 RIWG-YDFGPESKNLAVYISYLRRKLEPEGTTPLIQTVRGVGYTL 229 >gi|313115387|ref|ZP_07800858.1| response regulator receiver domain protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310622301|gb|EFQ05785.1| response regulator receiver domain protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 233 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 93/228 (40%), Gaps = 9/228 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++IDD + + +S + L ++ S I ++ + Sbjct: 5 LIIDDDKKLCALMKKCVEQENLSAVVAHGGLEGLRLLEKNKDTCSLIILDVMMPDMNGFQ 64 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + IR + VP++ ++ + + G DD + KP E++ARV ++ RR Sbjct: 65 VLQKIREKNNVPVLMLTAKSDEEDKVSGLRLGADDYLTKPFGINELMARVNSLIRRYTTL 124 Query: 123 NN-------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 N + + R VQ L +E +L +L +N+G+ K Q+++ Sbjct: 125 NPVTGNEAATMLLKDMVIDKINRTVTVQNLPVDLTGKEFDLLLFLASNKGRVFTKKQLYT 184 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDW 222 ++ + ++N + + ISKLRKK+ + + R +GY + Sbjct: 185 QVW-TEEYDFDDNNLMAFISKLRKKIEPNPEQPFYIQTVRGVGYRFNK 231 >gi|266624372|ref|ZP_06117307.1| regulatory protein VanR [Clostridium hathewayi DSM 13479] gi|288863787|gb|EFC96085.1| regulatory protein VanR [Clostridium hathewayi DSM 13479] Length = 230 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 48/229 (20%), Positives = 85/229 (37%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD + + L +G + E L D+ ++ + Sbjct: 5 ILIADDSEEIIEILQILLTGEGYEVVTAGDGEEAVRLADDT-IDLIILDVM--MPVKSGY 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 IR + P++ ++ F +G DD + KP + E+L+R ++ RR V Sbjct: 62 VACSEIRKKTMAPILFLTARTQDSDKSMGFSAGGDDYLAKPFSYSELLSRCKSLLRRYLV 121 Query: 122 SNNRAETGPIRV--------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 ++ P D R V+G L RE IL L+ NR K + I Sbjct: 122 YQGKSFAAPDNRLVLGDLTVDQDTRTVTVEGRDVNLTSREYCILVLLLKNRRKIFSSENI 181 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 + +++ N V HI LR+K+ + + + + GY ID Sbjct: 182 YESVWNEPYFYSANNNVMVHIRNLRRKIEKDPQNPEYIKTMWGRGYYID 230 >gi|227513674|ref|ZP_03943723.1| response regulator [Lactobacillus buchneri ATCC 11577] gi|227083085|gb|EEI18397.1| response regulator [Lactobacillus buchneri ATCC 11577] Length = 242 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 40/233 (17%), Positives = 92/233 (39%), Gaps = 18/233 (7%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + ++ + + + D+ ++ L E Sbjct: 5 LVVDDEPAIVTLLEYNLKQASFDVQNATNGADALSMIENNHYDIVLLDLML--PEMSGEE 62 Query: 63 LPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + I + P+I ++ + + + G DD V KP RE++AR+ A+ RR + Sbjct: 63 VLKRIRMDRNDTPVIVLTAKDTEFDKVFGLEMGADDYVPKPFSPREVIARINAVLRRYEK 122 Query: 122 SNNRAETG-------------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 S + P + V + L +E +++YL+ + + + Sbjct: 123 SEPSNQQNAAPIKSGDIETTGPFTIDHKQYKVSVNDQNLKLTPKEFELMQYLVGHENQVL 182 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++ Q+ ++G FD + + +V+ I+ LR+K+ + + + R GY Sbjct: 183 SRDQLLQGVWG-FDYSGQSRMVDIQIAHLREKIELDPKRPKYLKTIRGFGYEF 234 >gi|254384115|ref|ZP_04999460.1| two component system response regulator [Streptomyces sp. Mg1] gi|194343005|gb|EDX23971.1| two component system response regulator [Streptomyces sp. Mg1] Length = 255 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 55/225 (24%), Positives = 96/225 (42%), Gaps = 10/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD A + + +G + R DV ++ L L Sbjct: 30 LVVDDEASLSELLSMALRYEGCEVRSAGDGAGAVRAARGFRPDVVVLDIML--PDMDGLA 87 Query: 63 LPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + R QVP++ ++ S++ + +G DD V KP E++AR+ + RR Sbjct: 88 VLGQLRREIPQVPVLFLTARDSVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLVRRSGA 147 Query: 122 SNNRA-----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + G +R+ D + G+ L E +L YLM N + ++K QI Sbjct: 148 AQAARGGSVLAVGDLRLDEDSHEVTRGGQEVHLTATEFELLRYLMRNPRRVLSKAQILDR 207 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 ++ +D + NVVE +IS LR+KL G + ++R GY I Sbjct: 208 VWS-YDFGGQANVVELYISYLRRKLEAGTGLPPMIHTRRGAGYLI 251 >gi|126652889|ref|ZP_01725032.1| DNA-binding response regulator [Bacillus sp. B14905] gi|126590309|gb|EAZ84430.1| DNA-binding response regulator [Bacillus sp. B14905] Length = 233 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 49/226 (21%), Positives = 96/226 (42%), Gaps = 11/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVS-LEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 ++++D + + + +G++ + N++E + + D ++ L Sbjct: 6 ILVLEDERAIAEMIDIILRKEGMTSITVCNTIEAAKSEIYAKTFDFYLLDIML--PDGSG 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAI 115 LE+ IIR S P+ ++ S L F +G DD + KP + R + + Sbjct: 64 LEVAHIIREKSDAPIFYLTAKSSDADKLRGFMNGADDYITKPFNPLELVARVKVQLARYM 123 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 ++ N+ D + V G + R +L+YL N G+ ++K QI+ Sbjct: 124 KKKQVTENHLFTCSRFTFDIDAAEITVDGVREIISGRLFHLLKYLCDNAGQVLSKEQIYE 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++G D ++N V HI KLR+K+ N + + R +GY + Sbjct: 184 RVWG--DCLFDDNTVMVHIRKLREKIEKNPGKPTCIITVRGIGYKL 227 >gi|83643824|ref|YP_432259.1| response regulator [Hahella chejuensis KCTC 2396] gi|83631867|gb|ABC27834.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Hahella chejuensis KCTC 2396] Length = 244 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 42/226 (18%), Positives = 94/226 (41%), Gaps = 9/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++ G + +F G ++ + + D+ ++ L G+ Sbjct: 17 ILIVEDETAIRTGLVDVFVYHGYDVDFAVDGDDGLNKSLNGAYDLILLDVML--PGKNGY 74 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE----ILARVAAIY 116 E+ +R P+I ++ S + + G DD V KP + + A + Sbjct: 75 EICEAVRLKDRDQPIIMLTAKSSDEDVIHGLSLGADDYVAKPFSVAQLVLRVQAVLRRSR 134 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + G + + + + +GE RRE +L+YL + + V++ ++ + Sbjct: 135 SASLDDAHICLLGGLEIDTLNLSCQHKGEDVAFTRREMDVLQYLHEHSERPVSREELLNK 194 Query: 177 IYG-LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++G D +E V+ HI+KLR+K+ + + + R GY + Sbjct: 195 VWGYARDLDIETRTVDIHIAKLRRKIEADPKQPQRLVTVRGGGYRL 240 >gi|260438704|ref|ZP_05792520.1| DNA-binding response regulator VncR [Butyrivibrio crossotus DSM 2876] gi|292808906|gb|EFF68111.1| DNA-binding response regulator VncR [Butyrivibrio crossotus DSM 2876] Length = 217 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 43/220 (19%), Positives = 102/220 (46%), Gaps = 7/220 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 + ++D ++++G + G ++ +S D++ + + L Sbjct: 3 ILTVEDDNMIREGISEYLSEFGYTVIQAKDGREALSKFNS---DINLVILDIQIPFINGL 59 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IR S +P++ ++ + + +D F + VD + KP + AR+ ++ ++ Sbjct: 60 EVLKEIRKKSFLPILILTAFSDEEYKIDAFTNLVDGYMEKPFSLPVLKARIDSLIKKNYG 119 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 E + V + ++ GE + +E +L+ L+ N G+ + + QI ++ Sbjct: 120 HLEMFEYKNLSVNFNSYTAKINGEEIDVNAKELEVLKCLLDNNGQVLTRMQIIDYVWKDS 179 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +EA + V++ +I +LRKKL+ D + + R +GY ++ Sbjct: 180 EEAPYDRVIDVYIKELRKKLQL----DCITTIRNVGYKLE 215 >gi|153939200|ref|YP_001390756.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|152935096|gb|ABS40594.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|295318828|gb|ADF99205.1| DNA-binding response regulator [Clostridium botulinum F str. 230613] Length = 233 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 42/228 (18%), Positives = 86/228 (37%), Gaps = 10/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + G + + ++ ++ L Sbjct: 5 IMIIEDDKNIARLLGEHIEKYGYEALVAKDFKKILETFEIEKPNLILLDVNL--PKFDGY 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 R IR S P+I IS S + +SG DD + KP ++ +LA++ + RR+ Sbjct: 63 YWCRRIREKSLCPIIFISARDSEMNQVMAIESGADDYITKPFYYDVVLAKIKSQLRRVYG 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRI-------LEYLMANRGKRVAKTQIF 174 + +G + R+E + L+ +M + + ++ Sbjct: 123 DYAANSQVERILDVEGLLFYPERLQVHFTRKETMLSKKEGDLLDAMMKIYPRVATREELL 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 I+ V+EN + +I++LRKKL + D +++ R GY ++ Sbjct: 183 EKIWDDTTF-VDENTLNVNIARLRKKLLDLGIKDSIETVRGAGYRLNV 229 >gi|144898432|emb|CAM75296.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Magnetospirillum gryphiswaldense MSR-1] Length = 225 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 44/222 (19%), Positives = 92/222 (41%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + G +++ ++ +L ++ R D ++ L G L Sbjct: 3 ILIIEDDQEASAYLAKGLKEAGHTVDQAHNGNDGLFLATTERYDSMIVDRML--PGVDGL 60 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118 + + IR A + P++ +S + + +G DD + KP E+ Sbjct: 61 TIVQTIRGAGNTTPVLILSALGKVDDRVKGLKAGGDDYLVKPYAFAELLARIEALGRRTS 120 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 R + + + R G L RE R+LEYL+ + G+ V +T + ++ Sbjct: 121 ASQPETRLKVEDLEMDLLARTVTRSGRDIDLQPREFRLLEYLLRHAGQVVTRTMLLENVW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + N+++ HIS+LR+K+ + + R GY++ Sbjct: 181 -EYHFDPQTNLIDVHISRLRQKVDKDFDQALIHTVRGAGYTL 221 >gi|104774339|ref|YP_619319.1| two-component system, response regulator [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116514434|ref|YP_813340.1| DNA-binding response regulator [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|103423420|emb|CAI98293.1| Two-component system, response regulator [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116093749|gb|ABJ58902.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|325126134|gb|ADY85464.1| Two-component system regulator [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 237 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 44/229 (19%), Positives = 81/229 (35%), Gaps = 14/229 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G N+ S D ++ L L Sbjct: 4 ILIVEDEKNLARFVELELQHEGYETVVENNGRKALDRALSEDFDAILLDLML--PDLNGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----------REILA 110 E+ R +R P+I ++ S+ + D G DD + KP R + Sbjct: 62 EIARRVRQSKTTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVKI 121 Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 A +L ++ G+ L +RE +L L+ N+ V + Sbjct: 122 EKDASKNKLPRQKVVKFKDLTIETANRIVHRGDGKTVDLTKREYNLLMTLIENKNNVVGR 181 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 Q+ + I+G + +E NVVE ++ LR K+ + + R GY Sbjct: 182 DQLLNKIWG-PESNIETNVVEVYVRYLRNKIDIPGQPSYIKTVRGTGYM 229 >gi|70733706|ref|YP_257346.1| DNA-binding heavy metal response regulator [Pseudomonas fluorescens Pf-5] gi|68348005|gb|AAY95611.1| DNA-binding heavy metal response regulator [Pseudomonas fluorescens Pf-5] Length = 226 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 41/221 (18%), Positives = 95/221 (42%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A G+ G +++ + + D+ ++ L G Sbjct: 3 LLVVEDEAKTAHFLAKGLGESGFAVDVALNGLDGRYFIEQQEYDLIILDVML--PGLNGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120 +L +++R P++ ++ +++ + + G DD + KP E+LARV + R Sbjct: 61 QLLQLVRQRGATPVLFLTARDAIEDRVRGLELGADDYLLKPFAFAELLARVRTLLRRGPL 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + R G+ L +E +L L + +G+ +++T I S ++ L Sbjct: 121 REAESFSIADLEIDVLRRRVSRGGQRIALTNKEFALLHLLASRQGEVLSRTLIASQVWNL 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + N+VE + +LR K+ + + + R +GY ++ Sbjct: 181 -NFDSDTNMVEVAVRRLRAKVDDPYMPKLIHTVRGVGYQLE 220 >gi|284041699|ref|YP_003392039.1| two component transcriptional regulator [Conexibacter woesei DSM 14684] gi|283945920|gb|ADB48664.1| two component transcriptional regulator, winged helix family [Conexibacter woesei DSM 14684] Length = 223 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 44/221 (19%), Positives = 95/221 (42%), Gaps = 6/221 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD +++ DG +E + AR DV ++ + +E Sbjct: 1 MVVDDEPAMREALELALRLDGFEVELASDGRDAIRRLPGARPDVVLLDV--LMPELDGIE 58 Query: 63 LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R +R A + P++ ++ + + ++G DD ++KP E+LAR+ A+ RR Sbjct: 59 VCRRMRDAGDRTPVLMLTARDEVDDRVAGLEAGADDYLSKPFALPELLARLHALLRRTGW 118 Query: 122 SNNRA--ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + + + + + G+ L R E +LE + N + + + I ++G Sbjct: 119 AADAELLRFEDLELDPAACEAKRGGQTLELTRTEFLLLELFLRNPRQVLTRAVIVERVWG 178 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D N +E ++ LR+K + + R +GY + Sbjct: 179 -YDFGPTSNSIEVYVGYLRRKTEAAGASRLLHTVRGVGYVL 218 >gi|226312462|ref|YP_002772356.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226095410|dbj|BAH43852.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 217 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 48/221 (21%), Positives = 90/221 (40%), Gaps = 7/221 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D V + E + R D+ ++ L Sbjct: 4 ILVVEDDIAVANLIKLNLNTANYESTVVFDGEEALNVIERDRFDLILLDVML--PKVDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L I +P+I ++ S+ + +GVDD + KP E+LAR+ + R Sbjct: 62 TLFEKI-KPLGIPVIFLTAKSSVTDKVYGLKAGVDDYMTKPFEGIELLARIENVLRHYNK 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 +N V+ + + GE+ L +E +L +L+ N+ + + +I I+G + Sbjct: 121 KSNIINFKDTEVYLEEMKVKKNGEMIELTLKEFELLVFLVQNKNIVLTREKIIEKIWG-Y 179 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 D E +++HI KLRKKL K + + LGY ++ Sbjct: 180 DYVGETRTIDNHIQKLRKKLGWKDE---IKTVFKLGYRLEE 217 >gi|222112594|ref|YP_002554858.1| winged helix family two component transcriptional regulator [Acidovorax ebreus TPSY] gi|221732038|gb|ACM34858.1| two component transcriptional regulator, winged helix family [Acidovorax ebreus TPSY] Length = 223 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 52/221 (23%), Positives = 100/221 (45%), Gaps = 9/221 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G ++E + +L D ++ L L Sbjct: 3 ILVVEDEPTLCAQLVQAIAAAGHTVEHASDGAQAHYLGEVEDFDAVVLDLGL--PVLDGL 60 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL- 119 + R R A +P++ ++ + + D+G DD + KP H E+LAR+ A+ RRL Sbjct: 61 SVLRRWRAAGRNMPVLILTARSAWHEKVAGMDAGADDYLAKPFHMEELLARLRALLRRLG 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + ++ + + GPI + + V G+ L E ++L LM +G+ + +T + IY Sbjct: 121 EHASAQWQCGPIWLDTRQARVLVDGQPLTLTSHEFKLLSLLMQRKGQVLPRTLLSEHIY- 179 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D + N +E + +LRKKL +++ R LGY + Sbjct: 180 PHDSDRDSNTIEVFVGRLRKKL----PPGSIETVRGLGYRL 216 >gi|261405111|ref|YP_003241352.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261281574|gb|ACX63545.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] Length = 230 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 47/228 (20%), Positives = 91/228 (39%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + ++G +L + + + + D+ ++ + Sbjct: 6 ILMVDDETEILKLMEIYVRNEGYTLLTASHGLEALEILKNHKVDLIILDVM--MPQMDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + IR + P+I +S + G DD V KP E++AR+ + RR K Sbjct: 64 QACMKIREENNTPIIMLSAKSQEIDKIAGLSIGADDYVTKPFSPLELVARIKSQLRRYKQ 123 Query: 122 SNNRAETGPIRVFSD-------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 NN++ + D V G L RE +L L NRG ++ +I+ Sbjct: 124 LNNQSVRDENEIQIDELILNVASHRVTVAGREIKLTPREFSLLHTLAINRGLVLSMDKIY 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 + ++ +N V HI KLR+K+ + + + + +GY I+ Sbjct: 184 TEVWNEP-FMESKNTVMVHIRKLREKIEKDPQQPEYIKTVWGIGYKIE 230 >gi|163816027|ref|ZP_02207397.1| hypothetical protein COPEUT_02207 [Coprococcus eutactus ATCC 27759] gi|158448837|gb|EDP25832.1| hypothetical protein COPEUT_02207 [Coprococcus eutactus ATCC 27759] Length = 222 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 51/221 (23%), Positives = 97/221 (43%), Gaps = 5/221 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + + +G +++ + D ++ + +E Sbjct: 4 LVVEDEKDLNSIICSKLVKEGYNVDACYDGQAALDFIEMTEYDGVIMDIMI--PHVNGME 61 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120 + + IRA++Q P++ ++ Q + D+G D + KP E LAR+ + + Sbjct: 62 VLKTIRANNQQVPVLFLTAKGETQDIVRGLDAGASDYMTKPFEFPEFLARLRVMLRTQGV 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 V+ N G + V + G L RE ILEYL NR V + QI + I+ + Sbjct: 122 VNENVIACGSLVVDMNNHKAVRDGRNIDLTVREYAILEYLARNRNIVVTREQIRANIWNI 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D V NVV+ +I LR+K+ +K + + R +GY ++ Sbjct: 182 DD-DVNSNVVDVYIRYLRRKIDDKYDDKLIQTIRGVGYKLE 221 >gi|331005798|ref|ZP_08329157.1| Two-component system regulatory protein [gamma proteobacterium IMCC1989] gi|330420435|gb|EGG94742.1| Two-component system regulatory protein [gamma proteobacterium IMCC1989] Length = 251 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 54/224 (24%), Positives = 104/224 (46%), Gaps = 5/224 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L +D ++++ + S++ +L S D++ I+ L + Sbjct: 3 LLLAEDEKILRENLQQFLTRNSYSVDSAEEGREGLFLGSEHPYDIAIIDIGL--PEMDGI 60 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119 EL + +R H P++ ++ S Q + ++G DD + KP H+ E+LAR+ A R Sbjct: 61 ELIKQLRQHKKDFPVLILTARDSWQDKVIGLEAGADDYLAKPFHNEELLARLNALTRRSK 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +++ G I + + + + + L + E LEYL N+ + ++KT++ +Y Sbjct: 121 GLASPEIHIGEILINTAKKLVSINNQDITLTQYEYNTLEYLALNKARVISKTELTEHLYD 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 D ++ NV+E I +LRKKL P+ + R GY + N Sbjct: 181 Q-DFDLDSNVIEVLIGRLRKKLDPNNIHKPIVTHRGQGYRLTEN 223 >gi|325928438|ref|ZP_08189629.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Xanthomonas perforans 91-118] gi|325541155|gb|EGD12706.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Xanthomonas perforans 91-118] Length = 278 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 47/227 (20%), Positives = 96/227 (42%), Gaps = 12/227 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD ++ G ++ ++ + + R D+ ++ GE L Sbjct: 48 LVVDDDPDLRKLIGEFLSAHGYQVDMAENVAEMRSVMAQRRPDLIVLDVM--MPGEDGLS 105 Query: 63 LPRIIRAHSQVP-LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 R + + P +I +S + + + G DD + KP + RE+LARV A+ RR + Sbjct: 106 AARALASERGSPAVIMLSALGNDTDRIIGLEVGADDYLAKPCNPRELLARVRALLRRSQA 165 Query: 122 SNNRAETGPIRVFSDGRD--------PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 SN +A+ G + G L E +L + + + +++ Q+ Sbjct: 166 SNEQADQRGNVYEFAGWRLDVVRRDLRDPTGIFINLSDGEFALLRTFVEHPQRVLSRDQL 225 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G D V + ++S IS+LR+K+ ++ + + + R GY + Sbjct: 226 LDYARGR-DTDVYDRAIDSQISRLRRKINERVHTELIRTVRNEGYML 271 >gi|325845482|ref|ZP_08168773.1| putative alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Turicibacter sp. HGF1] gi|325488501|gb|EGC90919.1| putative alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Turicibacter sp. HGF1] Length = 233 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 40/227 (17%), Positives = 84/227 (37%), Gaps = 13/227 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D+G + + ++S + ++ L Sbjct: 4 ILIVDDDQAIAYLIADALEDEGFEIIICHDGNEALEKI-EESCEISLMILDIMMPKMDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR--------EILARVA 113 EL R +R + P+I +S TL + G DD + KP + Sbjct: 63 ELCRRVRDQLKAPIIFVSAKSRTLDTLLGLEMGADDYICKPFVVEELVARVKAHLRREKR 122 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 ++ + +++ + + L RE ++ +Y + N G+ +++ QI Sbjct: 123 HQMNAIESLQDVLPFDRFKLYLNRYEVFKDEVNIDLSPREFQLFQYFVENSGRVLSREQI 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 F AI+G + + V +I LR+KL + + +GY + Sbjct: 183 FDAIWG--ENYGDIGTVAVNIKNLRQKL--DPDNQYIKTIWGVGYKL 225 >gi|254518186|ref|ZP_05130242.1| DNA-binding response regulator [Clostridium sp. 7_2_43FAA] gi|226911935|gb|EEH97136.1| DNA-binding response regulator [Clostridium sp. 7_2_43FAA] Length = 226 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 41/223 (18%), Positives = 85/223 (38%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G + N+ + D+ ++ L L Sbjct: 4 ILIVEDEEKLARFIELELKHEGYEILKANNGRTGVEIAEKGEVDLVLLDIML--PEINGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117 E+ R IR S +P+I ++ ++ + D+G DD + KP I + Sbjct: 62 EVLRRIRRSSDIPVIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKKRIV 121 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 +K + G + + L RE +L+ LM N+ + + + + Sbjct: 122 TVKKDEDIIRCGLLSLDKMRHKVMYDSTEIELTNREFNLLQILMENKNIVLTRNTLMEKV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G +D E NV++ ++ LR K+ + + + R +GY I Sbjct: 182 CG-YDYIGETNVIDVYVRYLRTKIDDVFKVKTITTVRGVGYVI 223 >gi|89896507|ref|YP_519994.1| hypothetical protein DSY3761 [Desulfitobacterium hafniense Y51] gi|219667638|ref|YP_002458073.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|89335955|dbj|BAE85550.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219537898|gb|ACL19637.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 231 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 44/224 (19%), Positives = 91/224 (40%), Gaps = 9/224 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +LI+D + + +G + S + +L +S D+ ++ L + L Sbjct: 8 LLIEDDRYISNFVAVSLKKEGYKVTVAESADEGLFLFTSNHPDMVLLDLGL--PDKDGLV 65 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAIYR 117 + R IR S P++ +S + ++ D G DD + KP H R + + Sbjct: 66 VIREIRGFSGTPILVVSAREQEKEKIEALDLGADDYITKPFHMGELLARIRAVKRRLQQQ 125 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 S + + V + R V G L E ++L+ ++AN+GK + I + Sbjct: 126 LAPPSLSVFSCDYLTVDYEKRKVLVDGNEVHLTPMEYKLLQLMIANKGKVLTHNYIVKEV 185 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 +G + E + + ++ LR+K+ + + ++ +GY Sbjct: 186 WG-YSETGDTKTIRVFMANLRRKIEKNIAKPRFILTEIGVGYRF 228 >gi|194365942|ref|YP_002028552.1| two component heavy metal response transcriptional regulator, winged helix family [Stenotrophomonas maltophilia R551-3] gi|194348746|gb|ACF51869.1| two component heavy metal response transcriptional regulator, winged helix family [Stenotrophomonas maltophilia R551-3] Length = 232 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 43/223 (19%), Positives = 94/223 (42%), Gaps = 6/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G ++ ++ L S + ++ L G Sbjct: 3 LLIVEDEPKTGNYLRQGLIEAGYVVDLASNGIDGLHLAESGEYQLVILDVML--PGLDGW 60 Query: 62 ELP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118 + R+ A +P++ ++ S+ + + G DD + KP E+LARV + Sbjct: 61 TVLSRLRGAGWPLPVLFLTARSSIADRVQGLELGADDYLAKPFAFAELLARVRTLLRRGQ 120 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 R + V + R E G+ L ++E +LE L RG+ + ++ I S ++ Sbjct: 121 AVPQVERIVIADLVVDTQRRRVERGGQRIALSQKEYTLLELLARRRGEVLPRSLIASQVW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + + NV++ I +LR K+ + + + R +GY ++ Sbjct: 181 DM-NFDSDTNVIDVAIRRLRAKIDDDFADKLIITVRGMGYVLE 222 >gi|311106092|ref|YP_003978945.1| transcriptional regulator ResD [Achromobacter xylosoxidans A8] gi|310760781|gb|ADP16230.1| transcriptional regulatory protein ResD [Achromobacter xylosoxidans A8] Length = 242 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 48/227 (21%), Positives = 88/227 (38%), Gaps = 12/227 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D A + + D+G ++E D ++ L G LE Sbjct: 8 LIVEDDAHIAELLRLHLRDEGYAVEHAADGNEGMRRLEEGSWDALVLDLML--PGIDGLE 65 Query: 63 LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + RA P+I S S + + G DD + KP E++ARV A+ RR Sbjct: 66 ICKRARAMARYTPIIITSARSSEVHRILGLELGADDYLAKPFSMLELVARVRALLRRSDA 125 Query: 122 SNNRAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 A + + R EV G L RE +L + + K ++ + Sbjct: 126 LERNARIDAGSLALHGVSLDPVARTAEVDGRRLDLTPREFDLLHFFARHPDKVYSRMDLL 185 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + ++G + E+ V +HI++LR K+ + + + GY Sbjct: 186 NQVWG-YQHEGYEHTVNTHINRLRTKIEADPSDPQRILTVWGKGYKF 231 >gi|299537379|ref|ZP_07050677.1| two-component response regulator [Lysinibacillus fusiformis ZC1] gi|298727171|gb|EFI67748.1| two-component response regulator [Lysinibacillus fusiformis ZC1] Length = 227 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 90/224 (40%), Gaps = 9/224 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD +++ + + + S + D+ ++ E Sbjct: 5 LIVDDEQDMRNLIEMMLNNSDIETFTAASGTEAYDVIVRENIDLVLLDVM--MPHEDGFV 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-----YR 117 + + IRA S VP+I ++ + + + G DD + KP H E++AR+ A+ Sbjct: 63 VCQSIRAMSNVPIIFLTARDANEDKVKGLTLGGDDYIVKPFTHDELVARIYAVLRRSGAN 122 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 ++ G I++ R V G+ PL +E +L M N G ++ Q+ I Sbjct: 123 ITELQQKYVIFGSIKIDEIARKVSVDGKSIPLTLKEFELLHLFMKNPGNAYSREQLLERI 182 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + D V++HI LR KL + + +GY D Sbjct: 183 WDI-DYVGGTRTVDTHIKTLRIKLGKD-AASHIQTVWGVGYRFD 224 >gi|294138932|ref|YP_003554910.1| transcriptional regulatory protein OmpR [Shewanella violacea DSS12] gi|293325401|dbj|BAJ00132.1| transcriptional regulatory protein OmpR [Shewanella violacea DSS12] Length = 241 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 36/229 (15%), Positives = 85/229 (37%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ + G + + E + L + ++ L GE L Sbjct: 8 ILVVDDDMRLRALLERYLMEQGYQVRSAANSEQMDRLLERENFHLLVLDLML--PGEDGL 65 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112 + R +R +P+I ++ + + G DD + KP + RE + + Sbjct: 66 SICRRLRQQGNTIPIIMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQS 125 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + G + R+ E L E +L+ L+++ + +++ + Sbjct: 126 QDVPGAPTQQEEEVTFGEFTLNLATREMYHDEEAISLTSGEFAVLKVLVSHPREPLSRDK 185 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + + G D + E ++ +S+LR+ + + + + LGY Sbjct: 186 LMNLARGR-DYSALERSIDVQVSRLRRLIEKDPANPRYIQTVWGLGYVF 233 >gi|227510111|ref|ZP_03940160.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227190490|gb|EEI70557.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 245 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 48/237 (20%), Positives = 90/237 (37%), Gaps = 19/237 (8%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D V + F +G + + + E I L + + Sbjct: 3 LLMIEDNKSVSEMMSMFFQKEGWDVSFAYDGIEAVDMFNEDPESWDMITLDLNLPKKDGM 62 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ + IRA S+ VP+I ++ S + F+ G DD V KP ++AR+ A+ RR Sbjct: 63 EVAKEIRAKSKSVPIIMLTARDSDSDQVLGFEMGADDYVTKPFSPITLVARIKALQRRAH 122 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEV----------------FPLPRRERRILEYLMANR 164 E L +E +L L Sbjct: 123 TEAQAEEPEHSEEKQKKEYQITTEHFKLNTNTREAYLDGQLIPELTPKEFELLNALAQKP 182 Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + ++ Q+ ++G ++ +E V++HI KLR+K+ ++G + + +GY D Sbjct: 183 RQVFSREQLLELVWG-YEYYGDERTVDAHIKKLRQKIE-RVGPQVIQTVWGVGYKFD 237 >gi|222096358|ref|YP_002530415.1| response regulator [Bacillus cereus Q1] gi|221240416|gb|ACM13126.1| response regulator [Bacillus cereus Q1] Length = 215 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 37/220 (16%), Positives = 94/220 (42%), Gaps = 11/220 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++ DD + A F + + E + + D++ ++ + Sbjct: 4 LIADDEQDMLRILKAYFEKEDFEVLLAKDGEEALQIFYDEKIDLAILDWM--MPKYSGIT 61 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + I+ +S V ++ ++ + L SG D+ V KP H ++ R ++L Sbjct: 62 VCQEIKKNSSVKVLMLTAKSESEDELAALQSGADEYVKKPFHPGVLITRA----KKLIQH 117 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 ++ + +++ + + + E +++ + ++G + + ++ ++G FD Sbjct: 118 DDVIQVQDLKIDFTKNKVYKNDKELDITKTELELIKCFLNHKGMILTRKKLLDIVWG-FD 176 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 EE V++H+ +LRKK+ + + + R LGYS++ Sbjct: 177 YFGEERTVDTHVRRLRKKVGE----NIIKTHRGLGYSLEE 212 >gi|210614659|ref|ZP_03290270.1| hypothetical protein CLONEX_02484 [Clostridium nexile DSM 1787] gi|210150649|gb|EEA81658.1| hypothetical protein CLONEX_02484 [Clostridium nexile DSM 1787] Length = 224 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 49/223 (21%), Positives = 90/223 (40%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V D + F + E Q++ D+ ++ G L Sbjct: 5 LLIVDDERGVVDMLKSYFEMQSFVVYTAYDGETALK-QAACHPDLVLLDIN--MPGMDGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + IR+H P++ ++ + F G DD + KP E+ ARVAA RR Sbjct: 62 TVCEKIRSHISCPILFLTARIETADKIKGFQVGADDYIIKPFDIDELGARVAAHLRRENR 121 Query: 122 SNNR---AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + + R+ + G L ++E I+E L N G+ + +I+ A++ Sbjct: 122 KQGQSELRFFSEMVIDYSKREVSINGTPVNLSKKEFDIVELLSLNAGQVFDRERIYEAVW 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 GL D + + HI K+R K +++ +GY + Sbjct: 182 GL-DGEGNSDTIMEHIRKIRSKFTALSHHSYIETVWGVGYKWN 223 >gi|168185446|ref|ZP_02620081.1| regulatory protein VanR [Clostridium botulinum C str. Eklund] gi|169296251|gb|EDS78384.1| regulatory protein VanR [Clostridium botulinum C str. Eklund] Length = 232 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 46/225 (20%), Positives = 86/225 (38%), Gaps = 10/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD +++ ++G+ + L + ++ ++ Sbjct: 7 LVVDDDKEIREAIKIYLKNEGIKVFEAKDGIDALMLLQEQEIHLILMDIM--MPKMDGIK 64 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 IR +P+I +S + + G DD V KP + E++ARV + RR Sbjct: 65 ATFKIREKKDIPIIMLSAKSEDTDKILGLNIGADDYVTKPFNPLELIARVKSQLRRYVRF 124 Query: 123 NNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + + V GE L E +ILE LM N+G+ + QI+ Sbjct: 125 ASYKRNTEELQVGGIILNKNTKLVSVDGEEVRLTPIEYKILELLMENKGQVFSIEQIYEN 184 Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++ E N V HI ++R+K+ N + +GY I Sbjct: 185 VWNEPCYNAE-NTVPVHIRRIREKIEINPKEPRYLKVVWGIGYKI 228 >gi|117617885|ref|YP_858673.1| transcriptional regulatory protein CreB [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117559292|gb|ABK36240.1| transcriptional regulatory protein CreB [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 224 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 49/222 (22%), Positives = 93/222 (41%), Gaps = 5/222 (2%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + L++D A + D I DG +E F + R D ++ L Sbjct: 5 VIWLVEDEASIADTLIYALQTDGFEVEWFMLGQQLLTRLEQTRPDFLILDVGL--PDISG 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL + +R + +PL+ ++ L + G DD V KP RE+ + R Sbjct: 63 FELCKQVRVLTDIPLMFLTARSEEIDRLIGLEIGADDYVAKPFSPREV-CARVRVILRRS 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + + + +G+ L R E +L+ LM G+ ++ Q+ ++ Sbjct: 122 QPVAPQPSALLVLDEERARIHFRGQPLALTRYEYLLLKTLMQAPGRVYSRQQLMDLVWQD 181 Query: 181 FDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 +E+++ V++HI +R KLR + + + R LGYS++ Sbjct: 182 AEESLD-RTVDTHIKTIRAKLREHDPEANLILTHRGLGYSLE 222 >gi|117618398|ref|YP_858477.1| two-component system, regulatory protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117559805|gb|ABK36753.1| two-component system, regulatory protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 218 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 52/223 (23%), Positives = 98/223 (43%), Gaps = 9/223 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + G + + +L + D ++ L G L Sbjct: 3 ILIVEDEKTLAGQLAEQLRLSGFVTDLCHDGNEAGFLGETEPYDAIILDLGL--PGRDGL 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119 + + R+ P++ ++ L ++ ++G DD + KP E++ARV A + R Sbjct: 61 SVLKEWRSKGIDTPVLVLTARGQLHEKIEGLNAGADDYLTKPFQVAELVARVHALVRRAA 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +++ E G +R+ +G L E R+L YLM +RGK V+++++ IY Sbjct: 121 GNASSILEIGGVRLDMAASQVWYEGTPIKLTAHEFRVLGYLMQHRGKVVSRSELIDHIY- 179 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 D + N VE I ++RKK D +++ R LGY I+ Sbjct: 180 AQDFDRDSNTVEVFIGRIRKK----THSDLIETVRGLGYRINE 218 >gi|125624324|ref|YP_001032807.1| two-component system regulator llrE [Lactococcus lactis subsp. cremoris MG1363] gi|7669466|gb|AAF66142.1| putative response regulator [Lactococcus lactis subsp. cremoris MG1363] gi|124493132|emb|CAL98096.1| two-component system regulator llrE [Lactococcus lactis subsp. cremoris MG1363] gi|300071107|gb|ADJ60507.1| two-component system regulator llrE [Lactococcus lactis subsp. cremoris NZ9000] Length = 228 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 44/221 (19%), Positives = 94/221 (42%), Gaps = 3/221 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + D + + + A+ V + + L Sbjct: 6 LIVEDEPSISDYVKKELVFEDYQVSTAFDGLAALEVFEQAKPAVDVVLLDWMIPKLDGLT 65 Query: 63 LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R ++ P+I ++ + + D+G DD + KP E+LAR+ I+R+ Sbjct: 66 VLRRMKKIQPNTPIIFLTARDYIGDKVAGLDAGADDYITKPFEIEELLARLRLIFRKWST 125 Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 S ++ +V EV G+ L +RE +L Y + +RG V++ I ++G+ Sbjct: 126 SRSKVYELDYLKVDLTAHTTEVAGKTVNLTQREFALLSYFLEHRGIVVSRADILDDVWGM 185 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D +EN V++++ LR + +++ R +GY ++ Sbjct: 186 -DFDGQENTVDAYVRYLRATIDLPNHKSLIETVRGVGYRLN 225 >gi|33865481|ref|NP_897040.1| two-component response regulator, phosphate [Synechococcus sp. WH 8102] gi|33632650|emb|CAE07462.1| two-component response regulator, phosphate [Synechococcus sp. WH 8102] Length = 235 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 42/226 (18%), Positives = 87/226 (38%), Gaps = 8/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-EDVSAIEAFLIGKGEKV 60 ++++D +++ + +G + L +S + V + L+ G Sbjct: 10 LLVVEDDDSIRETVGEVLRAEGYDVLTCGDGAEALNLFTSEPAQQVDLLVLDLMLPGLGG 69 Query: 61 LELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAI 115 L+L R +R + P++ IS S + + G DD + KP R A + Sbjct: 70 LDLCRELRRINNNTPILVISARDSETDRVLGLEVGADDYLVKPFGLRELVARCRALLRRA 129 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + V + ++ + G L +E +ILE + + + ++ Q+ Sbjct: 130 QQDPSVLPEIYSHANLCLYVNECRVTRDGNDLNLSPKEYKILELFLQHPKRVWSRDQLLE 189 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 I+G+ D + V+ HI LR+K+ + + + R GY Sbjct: 190 KIWGI-DFVGDTKTVDVHIRWLREKIEEQPSSPELIRTVRGFGYRF 234 >gi|290352251|dbj|BAI78836.1| putative two-component response regulator [Streptococcus pyogenes] Length = 228 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 90/224 (40%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + +G + + D+ + L+ Sbjct: 5 ILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILL--NLMLPEMDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R ++ ++ ++ S+ + D G DD + KP E+LAR+ AI+RR + Sbjct: 63 EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122 Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + R + L +RE +L LM N + + + ++ S Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +DEAVE NVV+ +I LR K+ + + R +GY I Sbjct: 183 VW-KYDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225 >gi|78222245|ref|YP_383992.1| two component transcriptional regulator [Geobacter metallireducens GS-15] gi|78193500|gb|ABB31267.1| two component transcriptional regulator, winged helix family [Geobacter metallireducens GS-15] Length = 224 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 43/221 (19%), Positives = 90/221 (40%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++I+D + ++ ++ E ++ + D ++ L G + Sbjct: 3 ILIIEDEKRMAGILKKGLEENAFIVDLAGDGEEGLYMAENYPYDAVLLDIMLPVMDGLSI 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-ILARVAAIYRRL 119 L R S+VP++ I+ +++ + + G DD + KP E + + I R Sbjct: 63 LSALRS--KRSEVPVLLITARGEIESRIKGLNFGADDYIVKPFDFHELLARLKSVIRRSK 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + + ++ R G L E +LEYL N G+ +++T++ IY Sbjct: 121 GRPSPLVAIDDLSLDTNSRSVCRGGREIRLSATEYNLLEYLALNSGRVISRTELTEHIYD 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D + NV++ +++ LR KL + + R GY + Sbjct: 181 T-DFDRDSNVIDVYVNHLRNKLDKGFDRQLIHTVRGAGYIL 220 >gi|295102996|emb|CBL00540.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Faecalibacterium prausnitzii SL3/3] Length = 233 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 93/228 (40%), Gaps = 9/228 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++IDD + + +S + L ++ S I ++ + Sbjct: 5 LIIDDDKELCTLMKKCVEQENLSAVVAHGGLEGLRLLEKNKDTYSLIILDVMMPDMNGFQ 64 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + IR + VP++ ++ + + G DD + KP E++ARV ++ RR Sbjct: 65 VLQKIREKNNVPVLMLTAKSDEEDKVSGLRLGADDYLTKPFGINELIARVNSLIRRYTTL 124 Query: 123 NN-------RAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 N + + R VQ L +E +L +L +N+G+ K Q+++ Sbjct: 125 NPVTGNEAATMLLRDMVIDKINRTVMVQNLPVDLTGKEFDLLLFLASNKGRVFTKKQLYT 184 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSIDW 222 ++ + ++N + + ISKLRKK+ + + R +GY + Sbjct: 185 QVW-TEEYDFDDNNLMAFISKLRKKIEPNPEQPFYIQTVRGVGYRFNK 231 >gi|329905059|ref|ZP_08273989.1| Phosphate regulon transcriptional regulatory protein PhoB [Oxalobacteraceae bacterium IMCC9480] gi|327547769|gb|EGF32543.1| Phosphate regulon transcriptional regulatory protein PhoB [Oxalobacteraceae bacterium IMCC9480] Length = 229 Score = 135 bits (339), Expect = 6e-30, Method: Composition-based stats. Identities = 41/222 (18%), Positives = 94/222 (42%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++++D + + + G + N+ + ++ L G ++ Sbjct: 8 ILIVEDEPSIVELVSYTLREAGWNTMAVNTTAEAWEFIQRRTPHLILLDWMLPDQSGLRL 67 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118 L R R +P+I ++ + + D+G DD V KP RE+ AR+ A + Sbjct: 68 LSRIRADRQLQAIPVIMLTAKTMEEDKIAGLDNGADDYVTKPFSPRELTARIKALLRRKS 127 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + + GP+ + + + + E ++L++ +A+ + ++TQ+ ++ Sbjct: 128 PEHAQSMMRAGPVTLDPISCSVSLSDQKIEIGHAEFKLLKFFLAHPDRVFSRTQLLDKVW 187 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G +EE V+ H+ +LRK L+ + + R +GY + Sbjct: 188 GDH-AVIEERTVDVHVLRLRKALKE--AEHLIRTVRSVGYML 226 >gi|293374408|ref|ZP_06620733.1| response regulator receiver domain protein [Turicibacter sanguinis PC909] gi|325837122|ref|ZP_08166293.1| putative transcriptional regulatory protein ResD [Turicibacter sp. HGF1] gi|292646968|gb|EFF64953.1| response regulator receiver domain protein [Turicibacter sanguinis PC909] gi|325491072|gb|EGC93366.1| putative transcriptional regulatory protein ResD [Turicibacter sp. HGF1] Length = 226 Score = 135 bits (339), Expect = 6e-30, Method: Composition-based stats. Identities = 46/224 (20%), Positives = 100/224 (44%), Gaps = 10/224 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++ +D +++ + G D + E L S + D++ ++ G+ Sbjct: 8 LVAEDEVKIREILVDFLG-DYFEVIEAKDGEEALRLFHSQQIDLALLDLM--MPGKDGFS 64 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYRR 118 + + IR+ S+VP++ ++ S++ + +D VDD + KP ++ +I +A Sbjct: 65 VLKEIRSVSKVPIMILTARSSVEDQVKGYDLKVDDYITKPFENKILLAKINRLLARTNEE 124 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 +V+ + V R + E+ +E +L +L+ N + + +I A++ Sbjct: 125 DEVTTYELAFDGLVVNKLSRTVRIDNELIDFRPKEFDLLVFLIENHRIALDRDRILDAVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 G+ D + VV++HI K+RKKL N + + +GY + Sbjct: 185 GI-DYFGDTRVVDTHIKKIRKKLGNY--ARYIHTVFGVGYKFEV 225 >gi|257792299|ref|YP_003182905.1| two component transcriptional regulator, winged helix family [Eggerthella lenta DSM 2243] gi|317490222|ref|ZP_07948710.1| response regulator receiver domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|325833586|ref|ZP_08166035.1| DNA-binding response regulator [Eggerthella sp. HGA1] gi|257476196|gb|ACV56516.1| two component transcriptional regulator, winged helix family [Eggerthella lenta DSM 2243] gi|316910716|gb|EFV32337.1| response regulator receiver domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|325485510|gb|EGC87979.1| DNA-binding response regulator [Eggerthella sp. HGA1] Length = 230 Score = 135 bits (339), Expect = 6e-30, Method: Composition-based stats. Identities = 52/227 (22%), Positives = 98/227 (43%), Gaps = 8/227 (3%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEK 59 M ++D ++D + G GF + ++ ++ L G + Sbjct: 1 MIYYVEDDTNIRDLTVYALKQAGFEAAGFPAAGEFFAACKERLPELVLLDIMLPEIDGLE 60 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +L + R A +P++ ++ + T+ D+G DD + KP E+++RV A+ RR Sbjct: 61 ILHMLRENPATKHLPVMMLTAKGTEFDTVSGLDAGADDYLAKPFGMMELVSRVNALMRRA 120 Query: 120 KVSNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 A+ GPI + +V GE L +E +L L+ N+G ++++Q+ Sbjct: 121 SAPPVMADDELSCGPIELCVSAHTVQVGGEPITLTLKEFDLLHTLLQNQGHVLSRSQLLE 180 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYSI 220 ++G+ E V+ H+ LR+KL V + R +GY I Sbjct: 181 DVWGMT-YVGETRTVDVHVQTLRQKLAAAQEGADALVRTVRGVGYCI 226 >gi|153811670|ref|ZP_01964338.1| hypothetical protein RUMOBE_02062 [Ruminococcus obeum ATCC 29174] gi|149832411|gb|EDM87496.1| hypothetical protein RUMOBE_02062 [Ruminococcus obeum ATCC 29174] Length = 225 Score = 135 bits (339), Expect = 6e-30, Method: Composition-based stats. Identities = 53/221 (23%), Positives = 98/221 (44%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + DG + + L ++ D+ ++ L G L Sbjct: 3 ILIIEDEEQLCRSIAEGLRMDGYETDTCLDGDEGLELCTTENYDLILLDLNL--PGIDGL 60 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ R R +S P++ +S ++ ++ D G +D + KP H E+ AR+ ++ RR Sbjct: 61 DILRQFRETNSSTPVLILSARGQIEDKVEGLDLGANDYLTKPFHFEELEARIRSLTRRRF 120 Query: 121 VSNNRAETGPIR-VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + N + R + E L R+E +LEY M ++ + ++ ++ I+ Sbjct: 121 IQENVCLKCGHISFDTRTRKAHIDSEELSLTRKESALLEYFMLHQNRIISPEELIEHIWD 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + N + HIS LRKKLR LG DP+ +K GY + Sbjct: 181 GSVNSF-SNSIRVHISSLRKKLRAALGNDPIQNKVGQGYIL 220 >gi|71736826|ref|YP_275872.1| DNA-binding response regulator PhoP [Pseudomonas syringae pv. phaseolicola 1448A] gi|257485923|ref|ZP_05639964.1| DNA-binding response regulator PhoP [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289627099|ref|ZP_06460053.1| DNA-binding response regulator PhoP [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289648110|ref|ZP_06479453.1| DNA-binding response regulator PhoP [Pseudomonas syringae pv. aesculi str. 2250] gi|298487951|ref|ZP_07005990.1| DNA-binding response regulator PhoP [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|71557379|gb|AAZ36590.1| DNA-binding response regulator PhoP [Pseudomonas syringae pv. phaseolicola 1448A] gi|298157502|gb|EFH98583.1| DNA-binding response regulator PhoP [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330866032|gb|EGH00741.1| DNA-binding response regulator PhoP [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330986733|gb|EGH84836.1| DNA-binding response regulator PhoP [Pseudomonas syringae pv. lachrymans str. M301315] Length = 225 Score = 135 bits (339), Expect = 6e-30, Method: Composition-based stats. Identities = 54/223 (24%), Positives = 107/223 (47%), Gaps = 5/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D AL++ + G +E + E + + D++ I+ L G L Sbjct: 3 LLVVEDEALLRHHLRTRLTEAGHVVEAVANAEEALYQVTQFNHDLAVIDLGL--PGIGGL 60 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119 +L R +R + P++ ++ + Q ++ +G DD V KP E+ AR+ A + R Sbjct: 61 DLIRQLRTVGKAFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + GP+ + + + + + L E RILEYLM + + V K ++ +Y Sbjct: 121 GFIQSTITAGPLLLDLNRKHAALAEQPLALTAYEYRILEYLMLHHQQVVPKERLMEQLY- 179 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 D+ + NV+E + +LR+KL + + F P+++ R +GY + Sbjct: 180 PDDDERDPNVIEVLVGRLRRKLDSNVAFKPIETVRGMGYLFNE 222 >gi|300024004|ref|YP_003756615.1| two component transcriptional regulator, winged helix family [Hyphomicrobium denitrificans ATCC 51888] gi|299525825|gb|ADJ24294.1| two component transcriptional regulator, winged helix family [Hyphomicrobium denitrificans ATCC 51888] Length = 233 Score = 135 bits (339), Expect = 6e-30, Method: Composition-based stats. Identities = 41/223 (18%), Positives = 83/223 (37%), Gaps = 11/223 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ +G + D+ ++ GE L Sbjct: 15 ILVVDDDQKIRALLGRFLKSNGFRVTEAQDAAAARSFMRGLSFDLVLLDVM--MPGECGL 72 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY---RR 118 L R ++A VP+ ++ + + ++GVDD V+KP RE+L R+ I + Sbjct: 73 TLARDLKATRPVPICMLTALADAEDRISGLEAGVDDYVSKPFEPRELLLRLRNILRRGQT 132 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + G + + + L RER +L G V + ++ Sbjct: 133 PTATRDEIRMGGCVFNTTRGELRRDDDTIKLTERERDLLRLFAQRIGVAVPRHEL----- 187 Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 D E ++ I++LR+K+ + + + R GY + Sbjct: 188 SSDDSTGSERAIDVQINRLRRKIEADPSNPVYLQTVRGKGYIL 230 >gi|254788255|ref|YP_003075684.1| transcriptional regulator [Teredinibacter turnerae T7901] gi|237687195|gb|ACR14459.1| two component transcriptional regulator, winged helix family [Teredinibacter turnerae T7901] Length = 231 Score = 135 bits (339), Expect = 6e-30, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 96/224 (42%), Gaps = 6/224 (2%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + +L+DD + D +G +++ +S + +S + I ++ G Sbjct: 6 LILLVDDDQELCDLIGEYLTAEGFAVDKAHSGQSALTRLAS-PPECQLIVLDIMMPGLSG 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L++ + +R + P+I ++ + + G DD + KP + RE++ARV AI RR + Sbjct: 65 LDVLQRLRPSNSTPVIMLTGRGDDIDRILGLEMGADDYLAKPCNPRELVARVRAILRRTQ 124 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGE----VFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + ++Q + L E L+ LM + G+ K + Sbjct: 125 NPTSGDQHLLDVAGIQLSPADMQAKALGTPLQLTGAEFNTLKVLMQHPGQTQTKAFLTEQ 184 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + A + ++ H+S++R+KL N D + S R +GY + Sbjct: 185 VLHRPLTAYD-RSIDVHVSRIRQKLANAGIHDIIRSVRGVGYQL 227 >gi|213968160|ref|ZP_03396305.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato T1] gi|302058487|ref|ZP_07250028.1| response regulator receiver:transcriptional regulatory protein, C-terminal [Pseudomonas syringae pv. tomato K40] gi|213927140|gb|EEB60690.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato T1] Length = 249 Score = 135 bits (339), Expect = 6e-30, Method: Composition-based stats. Identities = 48/225 (21%), Positives = 92/225 (40%), Gaps = 9/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD +++ ++ G + DV ++ L GE L Sbjct: 23 LIVDDDVAIRELLCDYLTRFNINARGVTDGSQMRQALTDETFDVVVLDLML--PGEDGLS 80 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R +R+ S +P++ ++ + + G DD + KP RE++AR+ I RR++ Sbjct: 81 LCRWLRSTSDIPILMLTARCEPTDRIIGLELGADDYMAKPFEPRELVARIQTILRRVRDE 140 Query: 123 NNRAETGPIRVFSD-----GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + T + G V PL E R+L + + +++ Q+ A Sbjct: 141 RSDQRTTIRFDAWRLNSVLRQLTAADGLVVPLSNAEFRLLRVFLERPHRVLSREQLLDAA 200 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 G EA + ++ +S+LR+KL + + + R GY D Sbjct: 201 RGRSIEAFD-RSIDLLVSRLRQKLGDDPKNPQLIKTVRGEGYLFD 244 >gi|121605441|ref|YP_982770.1| osmolarity response regulator [Polaromonas naphthalenivorans CJ2] gi|120594410|gb|ABM37849.1| two component transcriptional regulator, winged helix family [Polaromonas naphthalenivorans CJ2] Length = 245 Score = 135 bits (339), Expect = 6e-30, Method: Composition-based stats. Identities = 44/230 (19%), Positives = 91/230 (39%), Gaps = 14/230 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++D +G + + + D+ ++ GE L Sbjct: 13 ILILDDDARIRDLLRRYLAQEGFDVILAEDSKALNRIMLRDAVDLIVLDLM--MPGEDGL 70 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R +R A+ + P+I ++ + + G DD + KP + RE+LAR+ A+ RR Sbjct: 71 SICRRLRAANDRTPIIMLTAKGEDVDRIVGLEVGADDYLAKPFNPRELLARIHAVLRRRP 130 Query: 121 V---------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 GP R + GE PL E +L+ L+ + + +++ Sbjct: 131 TAEVPGAPSSDQEVINFGPFSFDMSLRTLQKNGEELPLTTGEFAMLKTLVRHPRQPLSRE 190 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 ++ G + + ++ +S+LRK + + + +GY Sbjct: 191 KLAQLARGR-EFEPFDRSLDVQVSRLRKLIETDAAVPRYIQTVWGIGYVF 239 >gi|150017764|ref|YP_001310018.1| two component transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149904229|gb|ABR35062.1| two component transcriptional regulator, winged helix family [Clostridium beijerinckii NCIMB 8052] Length = 232 Score = 135 bits (339), Expect = 6e-30, Method: Composition-based stats. Identities = 40/230 (17%), Positives = 90/230 (39%), Gaps = 14/230 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D L+ + G E + E + D+ ++ L + Sbjct: 4 ILIIEDDKLIAELERDYLEVSGFKTEIAFNGEDGLNFALNREFDLILLDLML--PSKDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH----------HREILAR 111 +L + IR++ ++P++ ++ + F+ G DD + KP H R Sbjct: 62 QLCKEIRSNKEIPILMVTAKKDSVDKIKGFNLGADDYIVKPFDPSELVARVNAHLSRYDR 121 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + ++ ++ ++N +++ R V + L +E +L +L N +KT Sbjct: 122 LTSMGKKDNINNGVMVFKRLKILKRERRVYVADKEVKLANKEFELLLFLATNSNIVFSKT 181 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220 + I+G+ D + V HI+++R K+ +++ GY Sbjct: 182 ILLDRIWGM-DSFADVATVTVHINRIRDKIEEDSSNPQFIETVWGAGYRF 230 >gi|312140596|ref|YP_004007932.1| two component system response regulator [Rhodococcus equi 103S] gi|311889935|emb|CBH49252.1| putative two component system response regulator [Rhodococcus equi 103S] Length = 218 Score = 135 bits (339), Expect = 6e-30, Method: Composition-based stats. Identities = 39/222 (17%), Positives = 80/222 (36%), Gaps = 9/222 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + A +G ++ + D+ ++ L G LE Sbjct: 2 LVVDDEHTISESIAARLRAEGYAVRTAFDGPSAVTECETFGPDLVVLDVML--PGFDGLE 59 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDV--VNKPIHHREILARVAAIYRRLK 120 + R I+A VP++ ++ + G DD + Sbjct: 60 VCRRIQASRAVPVLMLTARADETDLVIGLGVGADDYLGKPFSMRVLVARISALLRRADRT 119 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 ++ G + + R G L R E +L +L + +A+ + ++G Sbjct: 120 TDSDVLVLGDVSIDLSARLVRSAGIEVHLTRTEFDLLAHLASRPRAAIAREILLEQVWGW 179 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 D V+SH+ LR+KL G D + + +GY+++ Sbjct: 180 GD-GASSRTVDSHVKALRRKL----GGDVIRTVHGVGYALEV 216 >gi|298290736|ref|YP_003692675.1| two component transcriptional regulator [Starkeya novella DSM 506] gi|296927247|gb|ADH88056.1| two component transcriptional regulator, winged helix family [Starkeya novella DSM 506] Length = 233 Score = 135 bits (339), Expect = 6e-30, Method: Composition-based stats. Identities = 55/221 (24%), Positives = 100/221 (45%), Gaps = 9/221 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D + + D G +++ E +L + D ++ L G V Sbjct: 3 LLVVEDDPDLNRQMVEALTDAGYAVDRAYDGEEGHFLGETEPYDAIVLDIGLPKMDGLSV 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119 LE R ++P++ ++ + FD+G DD V KP H E+LAR+ A + R Sbjct: 63 LEAWRR--EGRKMPVLILTARDRWSDKVQGFDAGADDYVAKPFHMEEVLARIRALLRRSA 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + GP+ + + V G L E R+L YLM + G+ V++T++ +Y Sbjct: 121 GHAASELTCGPVMLDTRSGRVTVDGRQVKLTSHEHRLLAYLMHHSGRVVSRTELVEHLYD 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D + N +E + +LRKKL + + + R LGY + Sbjct: 181 Q-DFDRDSNTIEVFVGRLRKKLD----VEVIQTVRGLGYLL 216 >gi|253580747|ref|ZP_04858011.1| two-component system response regulator [Ruminococcus sp. 5_1_39B_FAA] gi|251848118|gb|EES76084.1| two-component system response regulator [Ruminococcus sp. 5_1_39BFAA] Length = 224 Score = 135 bits (339), Expect = 6e-30, Method: Composition-based stats. Identities = 43/218 (19%), Positives = 95/218 (43%), Gaps = 4/218 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D +++G F DG + + + ++ D+ ++ L Sbjct: 6 ILIVEDDVDLREGLSFSFSGDGYDVTETGTKKDGLQEIANGGYDIVFLDCNL--PDGTGF 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL + +R++S +P+I ++ + + + GV+D ++KP + + K Sbjct: 64 ELCKEVRSYSNIPIIMLTARDTEMDEIKALELGVNDYLSKPFSLGVLK-ARMKRILQEKS 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + TG + + +G L + E R+L YL+ N+ ++K QI I+ Sbjct: 123 ESTKIVTGSLSIDQSTCKVYKRGSEISLSKLEYRLLVYLIENKNHILSKEQILEKIWDSD 182 Query: 182 DEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGY 218 + V+ N V +IS+LR K+ + + + +GY Sbjct: 183 GKYVDNNTVSVNISRLRTKIEDDVSKPKWIQTVHGIGY 220 >gi|266619511|ref|ZP_06112446.1| regulatory protein VanR [Clostridium hathewayi DSM 13479] gi|288868919|gb|EFD01218.1| regulatory protein VanR [Clostridium hathewayi DSM 13479] Length = 237 Score = 135 bits (339), Expect = 6e-30, Method: Composition-based stats. Identities = 42/234 (17%), Positives = 89/234 (38%), Gaps = 17/234 (7%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D +++G G + + ++ ++ + Sbjct: 6 ILLVEDDKEIREGVEIYLKSQGYEVFQAADGIEGLKILDQEEIHLAIVDVM--MPRMDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + +R P+I +S + + G DD ++KP E+LARV + RR + Sbjct: 64 TMTVKLREKYDFPVIILSAKTEEVDKIMGLNIGADDYISKPFTPMELLARVNSQLRRYRK 123 Query: 122 SNNR------------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 + G + + D + V G+ L E +IL LM N G+ + Sbjct: 124 YLDMLEAKELKEKSNIYVIGGLELNEDTVEVTVDGKPAKLTPIEFKILALLMKNPGRVFS 183 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 +I+ ++ + A+ + + H+ K+R+K+ N + +GY I+ Sbjct: 184 AEEIYERVWN--ERAINTDTIMVHVRKIREKIEINPKEPKYLKVVWGVGYKIEK 235 >gi|256851855|ref|ZP_05557243.1| phosphate regulon transcriptional regulatory protein PhoB [Lactobacillus jensenii 27-2-CHN] gi|260661884|ref|ZP_05862794.1| phosphate regulon transcriptional regulatory protein PhoB [Lactobacillus jensenii 115-3-CHN] gi|282931967|ref|ZP_06337431.1| regulatory protein VanR [Lactobacillus jensenii 208-1] gi|297205479|ref|ZP_06922875.1| response regulator [Lactobacillus jensenii JV-V16] gi|256615813|gb|EEU21002.1| phosphate regulon transcriptional regulatory protein PhoB [Lactobacillus jensenii 27-2-CHN] gi|260547353|gb|EEX23333.1| phosphate regulon transcriptional regulatory protein PhoB [Lactobacillus jensenii 115-3-CHN] gi|281303909|gb|EFA96047.1| regulatory protein VanR [Lactobacillus jensenii 208-1] gi|297150057|gb|EFH30354.1| response regulator [Lactobacillus jensenii JV-V16] Length = 228 Score = 135 bits (339), Expect = 6e-30, Method: Composition-based stats. Identities = 40/227 (17%), Positives = 92/227 (40%), Gaps = 9/227 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + ++G S + ++ D+ + ++ + Sbjct: 3 IIVVDDDKEIVELLSIYLKNEGYEPIAAYSGKEALTKIATT-PDIGLMILDIMMPQMTGI 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + +R S +P+I +S + +G DD V KP + E++ARV ++ RR + Sbjct: 62 DVIKELRKDSDIPIIVVSAKTGDMDKIQGLITGADDYVVKPFNPLEVMARVRSLLRRSQK 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQG------EVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + + + + V L E IL L ++ + + +IF Sbjct: 122 KVTSDKPDILEIGPLVINKDSHEVKTIAGNVIQLTALEFGILYLLASHPNRVFSADEIFE 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 ++ + V V H+S LR K++ G + + + +GY ++ Sbjct: 182 RVW-QQESVVSAKTVMVHVSHLRDKIQKATDGEEVIQTVWGVGYKVE 227 >gi|169826014|ref|YP_001696172.1| two-component response regulator [Lysinibacillus sphaericus C3-41] gi|168990502|gb|ACA38042.1| two-component response regulator [Lysinibacillus sphaericus C3-41] Length = 228 Score = 135 bits (339), Expect = 6e-30, Method: Composition-based stats. Identities = 50/224 (22%), Positives = 93/224 (41%), Gaps = 9/224 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD +++ + + + S + + D+ ++ E Sbjct: 6 LIVDDEQDMRNLIEMMLNNSDIETYTAASGTEAYDIIVREKIDLVLLDVM--MPHEDGFV 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119 + + IRA S VP+I ++ + + + G DD + KP H E+ AR+ A+ RR Sbjct: 64 VCQSIRAMSNVPIIFLTARDANEDKVKGLTLGGDDYIVKPFTHDELAARIYAVLRRSGAN 123 Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 ++ GPI++ R V G+ PL +E +L M N G + Q+ I Sbjct: 124 IAELQQKYVVFGPIKIDEIARKVSVHGKSIPLTLKEFELLHLFMKNPGNAYTREQLLERI 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + D V++HI LR KL + + + +GY D Sbjct: 184 WDI-DYVGGTRTVDTHIKTLRIKLGKEAAA-HIQTVWGVGYRFD 225 >gi|159899908|ref|YP_001546155.1| two component transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159892947|gb|ABX06027.1| two component transcriptional regulator, winged helix family [Herpetosiphon aurantiacus ATCC 23779] Length = 227 Score = 135 bits (339), Expect = 6e-30, Method: Composition-based stats. Identities = 50/226 (22%), Positives = 95/226 (42%), Gaps = 8/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++ G ++ ++ + ++ ++ G Sbjct: 3 ILVVDDDAELRGLIGFALSQAGYAVVQAADGTQALTQFAAEQPELVILDVN--MPGLDGF 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IRA S VP++ ++ S + D G DD +NKP R + ARV A+ RR+ Sbjct: 61 EVCRRIRAQSIVPVMLLTVRNSEDDLIRGLDGGADDYLNKPFSPRTLTARVRALLRRVGG 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQG--EVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 V R + L RE R+L+YL+AN G+ V+ Q+ ++G Sbjct: 121 ERPTPLQQGDLVLDTDRQSVSREGLGFVALTNREFRLLQYLLANAGRVVSNEQVTIHVWG 180 Query: 180 LFDEAVEENV-VESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223 + + ++ + +LR+K+ N + + +GY + N Sbjct: 181 HHG--IGDRTLLKQLVHRLRQKIEPNPTEPQYLVTIPSVGYMLQPN 224 >gi|296282156|ref|ZP_06860154.1| DNA-binding response regulator [Citromicrobium bathyomarinum JL354] Length = 247 Score = 135 bits (339), Expect = 6e-30, Method: Composition-based stats. Identities = 41/228 (17%), Positives = 87/228 (38%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L+DD +++ + G + +S L + D++ ++ GE L Sbjct: 14 ILLVDDERTLREPLVDYLVGQGFVVLEADSAASARSLLREKKADLALVDIM--MPGEDGL 71 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R + +P I ++ + + G DD V KP RE++AR+ ++ RR Sbjct: 72 SLTRHLIETQNLPTILLTAMGEATDRIVGLEIGADDYVTKPFEPRELVARIRSVLRRAGR 131 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEV--------FPLPRRERRILEYLMANRGKRVAKTQI 173 + E +G + + P+ E R+L + + + ++ Sbjct: 132 AATDDEGEDAHYLFEGWRLDPLKQRLTDPEGAVIPISTAEFRMLRAFLDYPRAVLDRDRL 191 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 + G + V++ +S+LR+K+ + + + R GY Sbjct: 192 LDMVQGREAHLFD-RAVDNQVSRLRRKIEDDSKNPHFIQTVRGGGYRF 238 >gi|289423154|ref|ZP_06424969.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Peptostreptococcus anaerobius 653-L] gi|289156485|gb|EFD05135.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Peptostreptococcus anaerobius 653-L] Length = 231 Score = 135 bits (339), Expect = 6e-30, Method: Composition-based stats. Identities = 53/230 (23%), Positives = 98/230 (42%), Gaps = 14/230 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++IDD + + +G + S + + D+ ++ L G ++ Sbjct: 4 ILIIDDEEHILELLDFNLSLEGYEVITTMSSLDGLDIIKQDKPDLVLLDWMLPKMSGIEL 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L + R + + +I ++ + L+ G DD V KP +E+ ARV I +R Sbjct: 64 LNIIRSDEDYDDIAVIMLTAKNMEEDKLEGLTIGADDYVTKPFSIKELSARVKNILKRYN 123 Query: 121 VSNNRAETGPIRVFS----------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 ++ +T I D + ++ + L +E IL+ L+ N+G+ +++ Sbjct: 124 KQDSNNKTNKIGSNKLKAGDLILELDRHEVYLRDRLIDLTVKEYGILKLLLENKGRVISR 183 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I I+G +D E V+ HI LRKKL + +D+ R LGY I Sbjct: 184 EYILEKIWG-YDYFGETRTVDVHIRYLRKKLGED--ENFIDTIRGLGYKI 230 >gi|260596190|ref|YP_003208761.1| DNA-binding transcriptional regulator BasR [Cronobacter turicensis z3032] gi|260215367|emb|CBA27379.1| Transcriptional regulatory protein pmrA [Cronobacter turicensis z3032] Length = 220 Score = 135 bits (339), Expect = 6e-30, Method: Composition-based stats. Identities = 51/222 (22%), Positives = 96/222 (43%), Gaps = 9/222 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D L+++G G++G +L+ + + L S + ++ L + Sbjct: 3 LLIVEDDLLLQEGLALALGNEGYALDCAANATEGDALLQSGEYSLIILDLGL--PDKDGA 60 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119 L R P++ ++ +L+ + D+G DD + KP E+ AR A I R Sbjct: 61 TLLSQWRRSGVTTPVLILTARDALEDRVSGLDAGADDYLVKPFALAELHARARALIRRYQ 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S+N + I + + +QG + +E +L LM G+ V + + IY Sbjct: 121 GHSDNLLQHDDITLNLQTQQVLLQGLPVEVTPKEFALLTRLMMRIGQTVHRETLQQDIYS 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D N +E HI LR+KL G + + R +GY ++ Sbjct: 181 WQD-DPSSNTLEVHIHNLRRKL----GKTRIRTIRGVGYRLE 217 >gi|218778176|ref|YP_002429494.1| two component transcriptional regulator, winged helix family [Desulfatibacillum alkenivorans AK-01] gi|218759560|gb|ACL02026.1| two component transcriptional regulator, winged helix family [Desulfatibacillum alkenivorans AK-01] Length = 235 Score = 135 bits (339), Expect = 6e-30, Method: Composition-based stats. Identities = 51/225 (22%), Positives = 92/225 (40%), Gaps = 7/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + G + +F +G + +G + S + D+ ++ L Sbjct: 8 ILLVEDDPAISRGLLDVFVFNGFAAKGVEDGKQGLDEALSGQYDLVILDVML--PSLDGF 65 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118 + R +R +I ++ S + F +G DD V+KP +E++ RV A Sbjct: 66 SICRKLREAKPSQAIIMLTAKGSENDIVTGFSAGADDYVSKPFSLKELMVRVEAVLRRSG 125 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + G I + L RRE I+ YL G+ V K ++ ++ Sbjct: 126 KNLGTAKVSIGGIIFDEAQLKASYDDKTEELTRREMDIVLYLHRQEGRIVPKRELLLEVW 185 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFD--PVDSKRFLGYSID 221 D VE V+ H+ KLRKK+ G D + + R GY ++ Sbjct: 186 HYNDPDVETRTVDIHVLKLRKKITELAGEDKPLIVTVRGEGYKLE 230 >gi|134096807|ref|YP_001102468.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|133909430|emb|CAL99542.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 219 Score = 135 bits (339), Expect = 6e-30, Method: Composition-based stats. Identities = 45/222 (20%), Positives = 88/222 (39%), Gaps = 11/222 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L++D A++++ G + + V+ ++ L +E Sbjct: 2 LLVEDDAVLREATQLALERYGYDVRTAVDGLAGWEEFQADAPQVAVLDVML--PNLDGIE 59 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYRR 118 L R IR S VP++ +S + ++G DD V KP I + V + R Sbjct: 60 LCRRIRGCSHVPVLMLSARTDPLDVVQGLEAGADDYVVKPFDTSVLVARIRSVVRRLRRE 119 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++ G + V D + G PL E R++ A G + ++ + ++ Sbjct: 120 PAPASAVRTFGDLEVDLDSLEVRRAGRSVPLTPTELRLVLEFAAQPGVVLTRSALLERVW 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + VV+ H+ +LR K+ G + V++ R GY + Sbjct: 180 D-YAWGGDTRVVDVHVQRLRAKI----GRERVETVRGFGYKL 216 >gi|257482938|ref|ZP_05636979.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331011818|gb|EGH91874.1| DNA-binding heavy metal response regulator [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 224 Score = 135 bits (339), Expect = 6e-30, Method: Composition-based stats. Identities = 38/223 (17%), Positives = 87/223 (39%), Gaps = 5/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G ++ + +L DV ++ L Sbjct: 3 ILVVEDEPKTAEYMHQGMTESGYIVDIAATGLDGLYLAQHQAYDVVILDVNL--PEMDGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119 E+ +R ++ ++ L+ + + G DD + KP E+ R Sbjct: 61 EVLSRLRKTVSTRVMMVTARGRLEEKVKGLELGADDYLVKPFEFPELLARVRTLMRRSEQ 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++ + G + + + L +E +L LM + G+ +++TQI S ++ Sbjct: 121 TTTSKVLQVGDLELDQGRHRAFRGSQRIDLTTKEFALLHLLMRHSGEVMSRTQIISLVWD 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + + + NVVE I +LR K+ + + + R +GY ++ Sbjct: 181 M-NFDCDTNVVEVSIRRLRAKIDDPFETKLIHTLRGVGYVLEV 222 >gi|228951062|ref|ZP_04113180.1| Two-component response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229068257|ref|ZP_04201560.1| Two-component response regulator [Bacillus cereus F65185] gi|229077882|ref|ZP_04210493.1| Two-component response regulator [Bacillus cereus Rock4-2] gi|229143295|ref|ZP_04271726.1| Two-component response regulator [Bacillus cereus BDRD-ST24] gi|229148910|ref|ZP_04277155.1| Two-component response regulator [Bacillus cereus m1550] gi|229177100|ref|ZP_04304489.1| Two-component response regulator [Bacillus cereus 172560W] gi|229188777|ref|ZP_04315812.1| Two-component response regulator [Bacillus cereus ATCC 10876] gi|228594678|gb|EEK52462.1| Two-component response regulator [Bacillus cereus ATCC 10876] gi|228606281|gb|EEK63713.1| Two-component response regulator [Bacillus cereus 172560W] gi|228634450|gb|EEK91034.1| Two-component response regulator [Bacillus cereus m1550] gi|228640102|gb|EEK96501.1| Two-component response regulator [Bacillus cereus BDRD-ST24] gi|228705400|gb|EEL57775.1| Two-component response regulator [Bacillus cereus Rock4-2] gi|228714718|gb|EEL66590.1| Two-component response regulator [Bacillus cereus F65185] gi|228808579|gb|EEM55080.1| Two-component response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 228 Score = 135 bits (339), Expect = 6e-30, Method: Composition-based stats. Identities = 52/222 (23%), Positives = 99/222 (44%), Gaps = 7/222 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A + + + + D+ ++ + E +L D ++ G Sbjct: 8 LLVVEDNASLLESIVQILRDE-FEVDTAINGEDGLFLALQNIYDAILLDVM--MPGMDGF 64 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118 E+ + IR + P++ ++ SL+ + D G DD + KP E+ AR+ A Sbjct: 65 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 124 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + I +F +D +V G+ L ++ +LEYL+ N GK + + QIF ++ Sbjct: 125 SLTTQQTIRYKGIELFGKDKDVQVDGQSIKLTLKQYELLEYLIQNSGKILMREQIFDRVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G FD +VE ++ LRKKL + + R +GY + Sbjct: 185 G-FDSDTTVAIVEVYVHHLRKKLEPFGYQKDIQTVRGIGYIL 225 >gi|212633281|ref|YP_002309806.1| transcriptional regulatory protein [Shewanella piezotolerans WP3] gi|212554765|gb|ACJ27219.1| Response regulator receiver:Transcriptional regulatory protein [Shewanella piezotolerans WP3] Length = 231 Score = 135 bits (339), Expect = 6e-30, Method: Composition-based stats. Identities = 37/222 (16%), Positives = 87/222 (39%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + + D G S+ N +F + + R D+ ++ L + Sbjct: 7 ILVVEDDSSLAEWISDYLLDHGYSITVANQGDFALAMIAEERPDLVLLDVML--PVKNGF 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119 ++ + RA P++ ++ + D G DD + KPI + + + Sbjct: 65 DVCKEARAFYTGPILFMTACVEDGDEIQGLDVGADDYLTKPIRPQVLLARIKALLRRATD 124 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + + + + ++ +V L E +L L G V+++ + + + G Sbjct: 125 DNIKQKLVFDSLTLNAAAKSVAIEQQVLDLNANEFDVLWLLALKVGTVVSRSDLIAELRG 184 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220 + + + ++ IS+LRKKL + + R GY Sbjct: 185 I-EYDGFDRSIDIRISRLRKKLHEAKNQPYKIKTIRGKGYLF 225 >gi|56460761|ref|YP_156042.1| response regulator [Idiomarina loihiensis L2TR] gi|56179771|gb|AAV82493.1| Response regulator (CheY, wHTH domains) [Idiomarina loihiensis L2TR] Length = 237 Score = 135 bits (339), Expect = 6e-30, Method: Composition-based stats. Identities = 45/224 (20%), Positives = 100/224 (44%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD ++ A +G + + E +S + ++ L Sbjct: 12 ILVIDDEPQIRRFMRASLTAEGYTYLEAATAEQGIKQITSQNPHLVILDLGL--PDADGY 69 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R +R SQVP++ ++ + + G +D + KP RE++AR+ + R L + Sbjct: 70 QVMRQLREWSQVPVLVLTARDDELQKVKLLEGGANDYLTKPFGIRELMARIHVLLRDLSI 129 Query: 122 SNNRAETGPIR----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 AE + + +Q E+ L R+E +L++L+++ K V + Q+ I Sbjct: 130 EQPTAEAQLRFGELLIDREQHKVFLQNEIVNLSRKEYALLDFLVSHPQKLVTQQQLLEKI 189 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 +G + + + + +S++RKKL++ ++++ +GY Sbjct: 190 WGQTHQE-DTHYLRIFVSQVRKKLKDDPAQPKYIETEPGVGYRF 232 >gi|150019435|ref|YP_001311689.1| two component transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149905900|gb|ABR36733.1| two component transcriptional regulator, winged helix family [Clostridium beijerinckii NCIMB 8052] Length = 242 Score = 135 bits (339), Expect = 6e-30, Method: Composition-based stats. Identities = 38/239 (15%), Positives = 76/239 (31%), Gaps = 23/239 (9%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + D + + G + E + + ++ L Sbjct: 6 ILVVEDEFSINDTLKFALSKENFEVRGAYNGESALKIFEEFEPHLVLLDIML--PDISGF 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL +I+ S + ++ D + + I + Sbjct: 64 ELCKIMSQKSYIVMLTARDDVIDKILGMEIGADDYITKPFEIREVTARINAIFRRVSKNI 123 Query: 122 SNNRAET--------------------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLM 161 NN E + D R G+ L R+E +L YL Sbjct: 124 FNNEHENIASTVSENDLDDIDGDKNKKDEFTINFDTRTVIKDGKEIMLKRKEFDLLSYLY 183 Query: 162 ANRGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 N+G + Q+ + ++G +D + V+ HI +LR L + V++ +GY I Sbjct: 184 KNKGIVFNRQQLLNEVWG-YDYYGDTRTVDVHIRRLRANLGDDKENSIVETVFGVGYVI 241 >gi|320323415|gb|EFW79503.1| DNA-binding response regulator PhoP [Pseudomonas syringae pv. glycinea str. B076] gi|320327611|gb|EFW83623.1| DNA-binding response regulator PhoP [Pseudomonas syringae pv. glycinea str. race 4] Length = 225 Score = 135 bits (339), Expect = 6e-30, Method: Composition-based stats. Identities = 54/223 (24%), Positives = 107/223 (47%), Gaps = 5/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D AL++ + G +E + E + + D++ I+ L G L Sbjct: 3 LLVVEDEALLRHHLRTRLTEAGHVVEAVANAEEALYQVTQFNHDLAVIDLGL--PGIGGL 60 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119 +L R +R + P++ ++ + Q ++ +G DD V KP E+ AR+ A + R Sbjct: 61 DLIRQLRTVGKAFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + GP+ + + + + + L E RILEYLM + + V K ++ +Y Sbjct: 121 GFIQSTIMAGPLLLDLNRKHAALAEQPLALTAYEYRILEYLMLHHQQVVPKERLMEQLY- 179 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 D+ + NV+E + +LR+KL + + F P+++ R +GY + Sbjct: 180 PDDDERDPNVIEVLVGRLRRKLDSNVAFKPIETVRGMGYLFNE 222 >gi|239982422|ref|ZP_04704946.1| turgor pressure regulator [Streptomyces albus J1074] gi|291454268|ref|ZP_06593658.1| two-component system response regulator [Streptomyces albus J1074] gi|291357217|gb|EFE84119.1| two-component system response regulator [Streptomyces albus J1074] Length = 227 Score = 135 bits (339), Expect = 6e-30, Method: Composition-based stats. Identities = 47/225 (20%), Positives = 92/225 (40%), Gaps = 9/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D A + + + L ++ D ++ L +E Sbjct: 5 LVVEDDAQLARALRINLEVRSYEVAAARDGDGALRLFATGEPDAVLLDLGL--PDTDGVE 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L + IR+ S+ P++ +S + D+G DD V KP E+LAR+ A RR + + Sbjct: 63 LIKAIRSRSRAPILVLSARHLSGEKVRALDAGADDYVTKPFSMDELLARLRAATRRRRAT 122 Query: 123 NNRAETGPIRVFSDGRDPE-----VQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + D +G L E +LE L A+ G+RV++ + + Sbjct: 123 AEAEALTVVTTDHFTIDLPAKKLLREGHPVRLTPTEWHLLEILAASPGRRVSQRALLLEV 182 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 +G A N + ++++LR+KL + + ++ LGY + Sbjct: 183 WG-PAYAENTNYLRVYMAQLRRKLEADPSRPRYLITEPGLGYRFE 226 >gi|212712838|ref|ZP_03320966.1| hypothetical protein PROVALCAL_03935 [Providencia alcalifaciens DSM 30120] gi|212684530|gb|EEB44058.1| hypothetical protein PROVALCAL_03935 [Providencia alcalifaciens DSM 30120] Length = 224 Score = 135 bits (339), Expect = 6e-30, Method: Composition-based stats. Identities = 52/224 (23%), Positives = 104/224 (46%), Gaps = 5/224 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D AL++ + G ++ + ++ + + D++ ++ L E L Sbjct: 3 ILIVEDNALLRHHLTVQLKELGHQVDSAEGAKEADYFLNESHPDIAVVDLGL--PDEDGL 60 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + + R++ +PL+ ++ S Q + +SG DD V KP E++AR+ A+ RR Sbjct: 61 SMIKRWRSNHVSIPLLVLTARESWQEKVQALNSGADDYVTKPFQLEELVARMQALMRRNS 120 Query: 121 VSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++ E + ++ V GE L E I+E L+ N GK V+K + +Y Sbjct: 121 GLASQVLELENFVIDLSRKEFTVNGESVKLTAFEYTIIETLLRNNGKVVSKDSLMRQLY- 179 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 E E + ++ + +LRKK++ + + + R GY D N Sbjct: 180 PDAELRESHTIDVLMGRLRKKIQQFHAQEVIVTVRGQGYRFDVN 223 >gi|228906400|ref|ZP_04070283.1| Two-component response regulator [Bacillus thuringiensis IBL 200] gi|228853216|gb|EEM97990.1| Two-component response regulator [Bacillus thuringiensis IBL 200] Length = 230 Score = 135 bits (339), Expect = 6e-30, Method: Composition-based stats. Identities = 43/220 (19%), Positives = 76/220 (34%), Gaps = 6/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L+DD + + G + S E + ++ Sbjct: 4 ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIM--MPKMDGW 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E + IR+ S VP+I ++ + G DD V KP H E+ R Sbjct: 62 ETCKRIRSFSNVPIIMVTARDQTVDVIQGLKLGADDYVTKPFHEEEL-FARIEAVLRRTN 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + + I V E L E +L + + +++ Q+ I+GL Sbjct: 121 EHKQIQYHGIVWDETKHFASVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGL- 179 Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219 + E+ ++SHI LR KLR + + +GY Sbjct: 180 NTNTEDRTIDSHIRNLRDKLRKANFPIDHHLKTVYGVGYR 219 >gi|228938514|ref|ZP_04101122.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228821112|gb|EEM67129.1| Two component transcriptional regulator, winged helix [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 203 Score = 135 bits (339), Expect = 6e-30, Method: Composition-based stats. Identities = 38/208 (18%), Positives = 75/208 (36%), Gaps = 7/208 (3%) Query: 17 ALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVPLI 76 + G + + + D ++ L + + IR S VP+I Sbjct: 1 MYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIM--MPEMDGLSVCKEIRKTSDVPII 58 Query: 77 GISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRLKVSNNRAETGPIRVF 134 ++ ++ G DD + KP E+ + + GPI + Sbjct: 59 FLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRRYTKQEQQEEIQFGPILIN 118 Query: 135 SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVESHI 194 R E GE L +E +L +L + G+ ++ Q+ ++G +D A V++H+ Sbjct: 119 EKSRRIEADGESISLTVKEFDLLYFLCQHTGQVFSREQLLEKVWG-YDYAGSTRTVDTHV 177 Query: 195 SKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +R KL + + +GY + Sbjct: 178 KTMRLKLGESGN--YIQTVWGVGYKFEV 203 >gi|120611299|ref|YP_970977.1| two component transcriptional regulator [Acidovorax citrulli AAC00-1] gi|120589763|gb|ABM33203.1| two component transcriptional regulator, winged helix family [Acidovorax citrulli AAC00-1] Length = 235 Score = 135 bits (339), Expect = 6e-30, Method: Composition-based stats. Identities = 42/223 (18%), Positives = 91/223 (40%), Gaps = 10/223 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + + + +G E + + DV ++ L G+ L+ Sbjct: 8 LIVEDESAIAELIAVNLRHNGFQPIWSEDGESAQRELDAVLPDVILLDWML--PGQSGLQ 65 Query: 63 LPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYR 117 L R RA +P++ ++ + D+G DD + KP +E+ R R Sbjct: 66 LARKWRADARTKPIPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIRAVLRRR 125 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + + + + + QG+ + E ++L YLM + + ++ Q+ + Sbjct: 126 APEQATDTVAISDLILDAGTYRVTYQGQQIKIGPTEFKLLHYLMKHPERVHSRAQLLDKV 185 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G +EE V+ H+ +LR+ L V++ R GY + Sbjct: 186 WGDH-VFIEERTVDVHVKRLREALGVAGA--MVETVRGAGYRL 225 >gi|83816732|ref|YP_444717.1| response regulator DrrA [Salinibacter ruber DSM 13855] gi|294506480|ref|YP_003570538.1| response regulator DrrA [Salinibacter ruber M8] gi|83758126|gb|ABC46239.1| response regulator DrrA [Salinibacter ruber DSM 13855] gi|294342808|emb|CBH23586.1| response regulator DrrA [Salinibacter ruber M8] Length = 237 Score = 135 bits (339), Expect = 6e-30, Method: Composition-based stats. Identities = 46/222 (20%), Positives = 95/222 (42%), Gaps = 10/222 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD V + ++G ++ E +S + D+ ++ L G E Sbjct: 13 LVVDDEKDVVEVVGHFLEEEGYTVHTAFDGEEALE-TASGKIDLIVLDIML--PGVDGYE 69 Query: 63 LPRIIR---AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-ARVAAIYRR 118 + R +R ++P++ +S + ++ G DD + KP+ + ++ A + R Sbjct: 70 VCRELRDSVETEEIPIVFLSAKTEEEDQIEGLMLGGDDYLTKPVSPQVLVAHVKAVLRRS 129 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++ E ++++ D E+ GE L E +L YL+ + K + Q+ I+ Sbjct: 130 GVEESSILEVDGLKIYEDEYRAELNGEDLGLTLTEFELLRYLVRHPRKAFTRQQLLETIW 189 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 V E V++HI LR+KL + + + R +GY Sbjct: 190 -KDAMMVTERTVDAHIKNLREKLGDF--AKHIQTVRGVGYRF 228 >gi|291535476|emb|CBL08588.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Roseburia intestinalis M50/1] Length = 224 Score = 135 bits (339), Expect = 6e-30, Method: Composition-based stats. Identities = 35/221 (15%), Positives = 85/221 (38%), Gaps = 7/221 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + F + D+ ++ + Sbjct: 5 ILVVDDDKELVKMLCSYFNMKQYETITATDGMEALNKIK-MKPDIILLDIN--MPRMDGI 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY---RR 118 E+ R+IR+ P++ ++ ++ SG DD + KP RE+ AR+ R Sbjct: 62 EVCRLIRSKVLCPILFLTARVDEDDKINGLLSGGDDYITKPFSLRELEARIVTNIKREER 121 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + + + + G + E +I+E+L + G+ K +I++ + Sbjct: 122 HQQKTEYRFMDEMLIDYSEKIVAIAGHRMEFTKIEYQIIEFLSMHPGQVFDKERIYAQVC 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 G +D + + + ++RKK+ + + +++ +GY Sbjct: 182 G-YDAEGDSRTITELVRRIRKKIADYSEKEYIETVWGIGYR 221 >gi|302873819|ref|YP_003842452.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] gi|307689939|ref|ZP_07632385.1| two component transcriptional regulator, winged helix family protein [Clostridium cellulovorans 743B] gi|302576676|gb|ADL50688.1| two component transcriptional regulator, winged helix family [Clostridium cellulovorans 743B] Length = 218 Score = 135 bits (339), Expect = 6e-30, Method: Composition-based stats. Identities = 44/221 (19%), Positives = 94/221 (42%), Gaps = 7/221 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + + G L D+ ++ L G Sbjct: 5 ILIIEDEEAISNLIKINLTMAGYESRQVFDGLEALNLLKEESFDLILMDIML--PGMDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL + I+ +P+I ++ L ++ +G +D + KP E+LAR+ + RR Sbjct: 63 ELMKRIKDL-NIPVIFLTAKNGLADKVNGLKAGAEDYIVKPFETVELLARIEVVLRRYSK 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 ++N E ++++ D R + E L +E ++ L+ N+ +++ + I+G + Sbjct: 122 NSNCIEFKSLQIYEDKRIIKKDEETIELTLKEFELMLLLVKNKNIALSREYLLEKIWG-Y 180 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + E +++HI K+RKKL + + +GY ++ Sbjct: 181 EYMGETRTIDTHIQKVRKKLNIADN---IKTVYKIGYRLEE 218 >gi|256829868|ref|YP_003158596.1| winged helix family two component transcriptional regulator [Desulfomicrobium baculatum DSM 4028] gi|256579044|gb|ACU90180.1| two component transcriptional regulator, winged helix family [Desulfomicrobium baculatum DSM 4028] Length = 229 Score = 135 bits (339), Expect = 6e-30, Method: Composition-based stats. Identities = 44/212 (20%), Positives = 85/212 (40%), Gaps = 5/212 (2%) Query: 15 YIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAHSQVP 74 A DG + + D+ ++ L +++ + +R S+VP Sbjct: 19 VKANLELDGFMVLSATDGASGLAAVQANAPDLVLLDLGL--PDIDGIKVCQTLRRDSEVP 76 Query: 75 LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSNNRAETGPIRV- 133 +I +S ++ L + G DD + KP + E+ AR+ + RR++ S + Sbjct: 77 VIMLSARDTVADKLLGLECGADDYLVKPFNALELSARIRTVLRRIRRSETATAQRNGNII 136 Query: 134 -FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEENVVES 192 + +QG L R E +LE +A+ G+ + + I S +G V+ Sbjct: 137 LDYRSHEATIQGRQVRLTRTEFSLLELFVAHPGETLTRDFIQSQNWGDSKLYSHSRAVDV 196 Query: 193 HISKLRKKLRNKL-GFDPVDSKRFLGYSIDWN 223 H+ +LRKK+ + + +GY + N Sbjct: 197 HVQRLRKKIEENPQAPRIILTVAGVGYRFEPN 228 >gi|227502103|ref|ZP_03932152.1| response regulator [Corynebacterium accolens ATCC 49725] gi|306836868|ref|ZP_07469824.1| response regulator [Corynebacterium accolens ATCC 49726] gi|227077162|gb|EEI15125.1| response regulator [Corynebacterium accolens ATCC 49725] gi|304567240|gb|EFM42849.1| response regulator [Corynebacterium accolens ATCC 49726] Length = 234 Score = 135 bits (339), Expect = 6e-30, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 89/224 (39%), Gaps = 10/224 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + + NS + D ++ G E Sbjct: 10 LVVDDEPNIVELLTVSLKFQNFEVYSANSGNEALRVAREVNPDAYILDVM--MPGMDGFE 67 Query: 63 LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L +R P++ ++ + + G DD V KP E++ R+ I RR Sbjct: 68 LLGKLRQEGLDGPVLYLTAKDGVDQRIHGLTIGADDYVTKPFSLEEVITRLRVIMRRGGA 127 Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + + D + GE+ L E +L YLM N+ ++K++I Sbjct: 128 AEESSNDATMSYADLTLNDDTHEVTKGGELIELSPTEFNLLRYLMQNKEVVLSKSKILDN 187 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +D + NVVES+IS LR+K+ + + + R +GY + Sbjct: 188 VW-HYDFGGDGNVVESYISYLRRKI-DTGDTQLIHTVRGVGYVL 229 >gi|330959033|gb|EGH59293.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 267 Score = 135 bits (339), Expect = 6e-30, Method: Composition-based stats. Identities = 48/225 (21%), Positives = 93/225 (41%), Gaps = 9/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD +++ ++ G + DV ++ L GE L Sbjct: 41 LIVDDDVAIRELLCDYLTRFNINARGVTDGTQMRQALTDETFDVVVLDLML--PGEDGLS 98 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R +R+ S +P++ ++ + + G DD + KP RE++AR+ I RR++ Sbjct: 99 LCRWLRSTSDIPILMLTARCEPTDRIIGLELGADDYMAKPFEPRELVARIQTILRRVRDE 158 Query: 123 NNRAETGPIRVFSD-----GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + T + G V PL E R+L + + +++ Q+ +A Sbjct: 159 RSDQRTTIRFDAWRLNSVLRQLTAADGLVVPLSNAEFRLLRVFLERPHRVLSREQLLNAA 218 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 G EA + ++ +S+LR+KL + + + R GY D Sbjct: 219 RGRSIEAFD-RSIDLLVSRLRQKLGDDPKNPQLIKTVRGEGYLFD 262 >gi|325660770|ref|ZP_08149398.1| hypothetical protein HMPREF0490_00130 [Lachnospiraceae bacterium 4_1_37FAA] gi|331085492|ref|ZP_08334577.1| hypothetical protein HMPREF0987_00880 [Lachnospiraceae bacterium 9_1_43BFAA] gi|325472844|gb|EGC76054.1| hypothetical protein HMPREF0490_00130 [Lachnospiraceae bacterium 4_1_37FAA] gi|330407730|gb|EGG87228.1| hypothetical protein HMPREF0987_00880 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 219 Score = 135 bits (339), Expect = 6e-30, Method: Composition-based stats. Identities = 49/221 (22%), Positives = 95/221 (42%), Gaps = 6/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 + +DD A + DG ++ E ++ S R D+ ++ G Sbjct: 4 ILAVDDEAKILQIIRKALEKDGHIVQTVQDGEVVRQMELS-RYDLILLDVM--MPGIDGF 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R IR P++ ++ + + SG DD + KP E+ ARV A RR Sbjct: 61 TLCREIRETVDCPIVFLTAKTLEEDLMAGLGSGADDYICKPFGLGELRARVQAHLRRELR 120 Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + + + + PL + E +I EYL + G+ +++ QI+ A++G Sbjct: 121 EKKQVFAVSGLHFYMQAKKVMAKDQKVPLTKSEYQICEYLALHHGQTLSREQIYEAVFG- 179 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ + + + HI +R KL K+ +P+++ +GY + Sbjct: 180 YEGESDASAITEHIKNIRAKL-IKVQAEPIETVWGMGYRWN 219 >gi|299536678|ref|ZP_07049990.1| putative sensory transduction protein [Lysinibacillus fusiformis ZC1] gi|298728162|gb|EFI68725.1| putative sensory transduction protein [Lysinibacillus fusiformis ZC1] Length = 232 Score = 135 bits (339), Expect = 6e-30, Method: Composition-based stats. Identities = 41/227 (18%), Positives = 82/227 (36%), Gaps = 12/227 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D + +G + + + D+ ++ L L Sbjct: 5 LLLIEDDTAIGRIVKDTLEQEGYYVTWSTTGLEGLADFQTQPFDLVLVDWML--PEMDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + IR S VP++ +S G DD + KP E+ ARVA+ RR + Sbjct: 63 TVCQNIRWESDVPILMMSA-RKEDADKVEGLQGADDYIAKPFSLEELKARVASHLRRWRR 121 Query: 122 SNNRAETGPI-------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + + + V + L ++E ++ L N + K +++ Sbjct: 122 YHKQDVIEEHTAYANGLTIDWQRQIVCVYQQEIALTQKEFALVRLLAKNPSQTFTKEELY 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220 I+ + + V HI LR+KL++ + + + GY Sbjct: 182 QHIWQQATLE-DTHTVTVHIKALREKLKDSVKNPNFIQTVWGKGYRF 227 >gi|297564109|ref|YP_003683082.1| two component transcriptional regulator, winged helix family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296848558|gb|ADH70576.1| two component transcriptional regulator, winged helix family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 232 Score = 135 bits (339), Expect = 6e-30, Method: Composition-based stats. Identities = 47/225 (20%), Positives = 88/225 (39%), Gaps = 11/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++ DD ++D +G + + D+ ++ G L Sbjct: 8 LVADDDRAIRDSLERALQLEGYRVRTVPDGVQALAAVHADPVDLLVLDVM--MPGVDGLG 65 Query: 63 LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R++R + P++ ++ + D+G DD + KP E+LAR+ A+ RR Sbjct: 66 VARVLRAERDRTPILMLTARVETPDRVAGLDAGADDYLAKPFELEELLARLRALLRRAAP 125 Query: 122 SNNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 A R L + E +LE L+ N G + + I+ Sbjct: 126 FPEDASEQGPLRVGELSLDPASRRVWRGDREVELSKTEFDLLELLVRNAGIVLDHSTIYD 185 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I+G +D E + +IS LR+KL + G + + R +GY++ Sbjct: 186 RIWG-YDFGPESKNLAVYISYLRRKLED-GGPPLIQTVRGVGYTL 228 >gi|167622181|ref|YP_001672475.1| osmolarity response regulator [Shewanella halifaxensis HAW-EB4] gi|167352203|gb|ABZ74816.1| two component transcriptional regulator, winged helix family [Shewanella halifaxensis HAW-EB4] Length = 241 Score = 135 bits (339), Expect = 6e-30, Method: Composition-based stats. Identities = 35/229 (15%), Positives = 85/229 (37%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ + G + + E + L + ++ L GE L Sbjct: 8 ILVVDDDMRLRALLERYLMEQGYQVRSAANAEQMDRLLERENFHLLVLDLML--PGEDGL 65 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112 + R +R P++ ++ + + G DD + KP + RE + + Sbjct: 66 SICRRLRQMGNPIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQT 125 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + G + R+ E L E +L+ L+++ + +++ + Sbjct: 126 PEVPGAPTLQEEEITFGEYSLNLATREMYHGEESISLTSGEFAVLKVLVSHPREPLSRDK 185 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + + G D + E ++ +S+LR+ + + + + LGY Sbjct: 186 LMNLARGR-DYSALERSIDVQVSRLRRLIEKDAANPRYIQTVWGLGYVF 233 >gi|153810516|ref|ZP_01963184.1| hypothetical protein RUMOBE_00897 [Ruminococcus obeum ATCC 29174] gi|149833695|gb|EDM88776.1| hypothetical protein RUMOBE_00897 [Ruminococcus obeum ATCC 29174] Length = 231 Score = 135 bits (339), Expect = 6e-30, Method: Composition-based stats. Identities = 43/223 (19%), Positives = 90/223 (40%), Gaps = 9/223 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D G ++ E L S D+ ++ L + Sbjct: 14 ILIVEDDKRTNMAICEYLKPTGHNIVSAYDGEEALQLFHSTTIDLIVLDIML--PRLTGI 71 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + IR S +P++ ++ T FD DD V KP + R+ A+ RR Sbjct: 72 AVLHEIRKSSLIPVLMLTAIEDEYTQSQSFDELADDYVTKPFSMVLLGKRITALLRRCGQ 131 Query: 122 SN--NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + G + V G + + +E +L+ L+ ++G + ++QI ++G Sbjct: 132 MQSIDTITFGDVTVNFSGYTAHDKNGRIDITPKEIELLKLLIEHKGLVLTRSQILDELWG 191 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D + + ++++I LRKKLR + + + + +GY + Sbjct: 192 -YDYPIIDRTIDTYIKNLRKKLRL----NCIVTVKGIGYKYEV 229 >gi|153825200|ref|ZP_01977867.1| DNA-binding response regulator GltR [Vibrio cholerae MZO-2] gi|149741179|gb|EDM55230.1| DNA-binding response regulator GltR [Vibrio cholerae MZO-2] Length = 236 Score = 135 bits (339), Expect = 6e-30, Method: Composition-based stats. Identities = 40/226 (17%), Positives = 77/226 (34%), Gaps = 11/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ G G + + + D+ ++ G+ Sbjct: 7 ILVVDDNQELREALKDYLGKVGFEVICAENGSAMWNRLENHHPDLIILDIM--MPGDDGF 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-------ILARVAA 114 L + +R HS VP+I ++ + + G DD + K RE IL R Sbjct: 65 TLCQKLRKHSSVPIIMLTAVTEETDRVTGLELGADDYITKSFSPRELLARIKAILRRSQL 124 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + V L + +L + + K + + I Sbjct: 125 SDSLSVARKVTFAGWQLDTITRQLKHLETHVVKQLSGADLSVLGLFINHAEKILTRDDIA 184 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I+G D E ++ IS+LR L +K + + R GY + Sbjct: 185 REIWGR-DADPFERGIDVQISRLRTHLEDK-DRTLILTVRNKGYML 228 >gi|119487957|ref|ZP_01621454.1| Two component Transcriptional regulator, Winged helix family protein [Lyngbya sp. PCC 8106] gi|119455533|gb|EAW36671.1| Two component Transcriptional regulator, Winged helix family protein [Lyngbya sp. PCC 8106] Length = 231 Score = 135 bits (339), Expect = 6e-30, Method: Composition-based stats. Identities = 42/220 (19%), Positives = 87/220 (39%), Gaps = 4/220 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+ L+ + G +++ + + + ++ L GE L Sbjct: 12 ILVIESDELLAQHVSLDLEESGYYPVVVSNVTVGLHRATEMQPALIVVDRMLG--GESGL 69 Query: 62 ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L R + ++ P++ +L+ + +SG DD KP L V + Sbjct: 70 SLCRHLRNQGNRTPMVVFMARDTLEDRVACLESGADDYFLKPYRTESFLQLVRLYLQPTD 129 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + ++ + + R G L +E +L YLM + + + + QI ++G Sbjct: 130 HNTDQLRFSELGLDLATRCAFRNGRTIELTMKEFDLLRYLMEHPREVLTREQILENVWG- 188 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D E NV+E +I LR K+ + + + R +GY + Sbjct: 189 YDFLGESNVIEVYIRYLRLKIEEEGEKRLIQTVRGVGYVL 228 >gi|189426613|ref|YP_001953790.1| two component transcriptional regulator, winged helix family [Geobacter lovleyi SZ] gi|189422872|gb|ACD97270.1| two component transcriptional regulator, winged helix family [Geobacter lovleyi SZ] Length = 235 Score = 135 bits (339), Expect = 6e-30, Method: Composition-based stats. Identities = 39/226 (17%), Positives = 84/226 (37%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + G DG ++ F+ E R D+ ++ L G Sbjct: 8 IMLVEDELHLARGICFNLEQDGYAVSHFDRGETALEALRVERCDLIILDVML--PGMDGF 65 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-----HREILARVAAI 115 ++ + +R S+VP++ ++ + +SG DD + KP + R + Sbjct: 66 QVCKAMRELDSRVPILMLTARSEDVDRVSGLESGADDYLTKPFNLAEFLLRVKGMLRRSS 125 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + R + G V+ + L E R+L G+ + + ++ Sbjct: 126 WYRPDPVEEGYQFGVNEVYLLSYRAKTAQGEIDLTEMEVRVLALFFQREGQVIPRGELLE 185 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 +++G + E +++ I +LRK + + R +GY Sbjct: 186 SVWG-YSSDTETRTLDNFIVRLRKYFEPDPTRPTHFLTVRGVGYRF 230 >gi|148653918|ref|YP_001281011.1| osmolarity response regulator [Psychrobacter sp. PRwf-1] gi|148573002|gb|ABQ95061.1| two component transcriptional regulator, winged helix family [Psychrobacter sp. PRwf-1] Length = 248 Score = 135 bits (339), Expect = 6e-30, Method: Composition-based stats. Identities = 38/229 (16%), Positives = 89/229 (38%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++ DDG + + + L + ++ L GE + Sbjct: 16 ILVVDDDARLRSLLQRFLEDDGFVVRTAHDGSQMDKLMQRELFSLVVLDLML--PGEDGI 73 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112 + + +R +S +P+I ++ S + ++G DD + KP + +E + Sbjct: 74 AICKRLREENSDIPIIMLTAKGSDSDRIAGLEAGADDYLPKPFNPKELLARIKAVLRRHS 133 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + E GP + R + G V L E +L+ L+ + + + + + Sbjct: 134 RELPGAPSQQVEVVEFGPWTLDLSTRTLKRDGNVVTLTTGEFSVLKALVQHPREPLTRDK 193 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + + G + E ++ +S+LR+ + + + + +GY Sbjct: 194 LMNLARGR-EWGAMERSIDVQVSRLRRLIEDNPSQARYIQTVWGVGYVF 241 >gi|159185100|ref|NP_355164.2| two component response regulator [Agrobacterium tumefaciens str. C58] gi|159140371|gb|AAK87949.2| two component response regulator [Agrobacterium tumefaciens str. C58] Length = 237 Score = 135 bits (339), Expect = 6e-30, Method: Composition-based stats. Identities = 42/224 (18%), Positives = 83/224 (37%), Gaps = 12/224 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A +++ GD G + R D+ ++ GE L Sbjct: 18 LLIVDDDARIRNLLQRFLGDKGYRVSVAGDAAEARRKMVGIRFDLLILDVM--MPGENGL 75 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117 L R + + VP+I ++ + + ++G DD + KP R I + Sbjct: 76 SLTRSLNENKSVPVILLTARSEADSRIAGLEAGADDYLAKPFDPRELVLRINNILRRNTS 135 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + GP R+ E L RE+ I+ G + + ++ A Sbjct: 136 PDTPKIEQIMFGPYSFSIPKRELRRGAETIRLTDREQEIMLLFALRAGDTIPRHELVEA- 194 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 + V E ++ I++LR+K+ + + + R +GY + Sbjct: 195 ----ESEVGERTIDVQINRLRRKIEDDPANPVYLQTVRGIGYRL 234 >gi|315923877|ref|ZP_07920105.1| phosphate regulon response regulator [Pseudoramibacter alactolyticus ATCC 23263] gi|315622717|gb|EFV02670.1| phosphate regulon response regulator [Pseudoramibacter alactolyticus ATCC 23263] Length = 235 Score = 135 bits (339), Expect = 6e-30, Method: Composition-based stats. Identities = 49/222 (22%), Positives = 95/222 (42%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEG-FNSLEFEEWLQSSAREDVSAIEAFLIG-KGEK 59 ++D +++ + ++EG + F + LQ+ D+ ++ L G G Sbjct: 3 IYCVEDDDSIRELIVYTLNRSEHNVEGFAAAGPFWQALQAGTLPDLVLLDIMLPGEDGIA 62 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI-LARVAAIYRR 118 VL+ R ++P+I ++ + + D+G DD + KP E+ A R Sbjct: 63 VLKKLRAQGRTREIPVIMLTAKNAEVDKVMGLDAGADDYMTKPFGMMELLSRIRAVGRRT 122 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++ + GPI + V G+ L +E +L L+A G + + + + I+ Sbjct: 123 MRAPASTFSAGPITMDVRAHRVCVAGKAVALTLKEYNLLALLLAGAGTVLTRDALLTKIW 182 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G +D E V+ HI LR+KL + +++ +GY I Sbjct: 183 G-YDFDGETRTVDVHIRTLRQKLGDAG--KMIETVHGVGYRI 221 >gi|228474789|ref|ZP_04059520.1| transcriptional regulatory protein [Staphylococcus hominis SK119] gi|314935741|ref|ZP_07843093.1| DNA-binding response regulator [Staphylococcus hominis subsp. hominis C80] gi|228271452|gb|EEK12820.1| transcriptional regulatory protein [Staphylococcus hominis SK119] gi|313656306|gb|EFS20046.1| DNA-binding response regulator [Staphylococcus hominis subsp. hominis C80] Length = 224 Score = 135 bits (339), Expect = 6e-30, Method: Composition-based stats. Identities = 50/226 (22%), Positives = 98/226 (43%), Gaps = 6/226 (2%) Query: 1 MF--VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGE 58 M +++DD + D + +S E + R D++ ++ + G Sbjct: 1 MIKCLIVDDDPKLLHYVSKHLEADHIKTVTHSSGEQALKYLNHHRVDIAVVDIMMT--GM 58 Query: 59 KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 EL ++++ Q+P+I ++ +L F SG DD V KP +E+L R+ A+ RR Sbjct: 59 DGFELCQLLKDRYQLPVIMLTARDALSDKERAFVSGTDDYVTKPFEIKELLFRIRAVLRR 118 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQ-GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 +++ + +D + LP +E ++L L + + + I I Sbjct: 119 YQINTQNKIEIGNVILNDEFMEVSVASKKMNLPTKEFQLLFLLCTHPRQIYTRESIIEKI 178 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 +G FD +E V+ HI +LR +L+ + + R GY ++ + Sbjct: 179 WG-FDYTGDERTVDVHIKRLRTRLKKLEATIEIQTVRGQGYKVNKD 223 >gi|163842887|ref|YP_001627291.1| transcriptional activator protein copR [Brucella suis ATCC 23445] gi|163673610|gb|ABY37721.1| Transcriptional activator protein copR [Brucella suis ATCC 23445] Length = 235 Score = 135 bits (339), Expect = 6e-30, Method: Composition-based stats. Identities = 47/222 (21%), Positives = 86/222 (38%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D F + G S + E L + DV ++ L L Sbjct: 3 ILVIEDDREAARYLEKAFAEAGHSADIAGDGETGYALAENGNYDVLVVDRML--PKRDGL 60 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118 + +RA P++ +S + + +G DD + KP E+ V Sbjct: 61 SVVAGLRAKGMETPVLILSALGEVDDRVTGLRAGGDDYLTKPYAFSELLARVEVLQRRSS 120 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + ++ G + + Q L RE R+LEYLM + G+ V +T + ++ Sbjct: 121 PREADTIYRVGDLELDRLAHTARRQSVDITLQPREFRLLEYLMRHAGQVVTRTMLLENVW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + NV++ HIS+LR K+ + + R GY + Sbjct: 181 -NYHFDPQTNVIDVHISRLRSKIEKGFDEPLLHTVRGAGYML 221 >gi|71736657|ref|YP_274226.1| DNA-binding response regulator [Pseudomonas syringae pv. phaseolicola 1448A] gi|71557210|gb|AAZ36421.1| DNA-binding response regulator [Pseudomonas syringae pv. phaseolicola 1448A] gi|320329284|gb|EFW85281.1| DNA-binding response regulator [Pseudomonas syringae pv. glycinea str. race 4] gi|330882682|gb|EGH16831.1| DNA-binding response regulator [Pseudomonas syringae pv. glycinea str. race 4] Length = 249 Score = 135 bits (339), Expect = 6e-30, Method: Composition-based stats. Identities = 48/225 (21%), Positives = 92/225 (40%), Gaps = 9/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD +++ ++ G + DV ++ L GE L Sbjct: 23 LIVDDDVAIRELLCDYLTRFNINARGVTDGTQMRQALTDETFDVVVLDLML--PGEDGLS 80 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R +R+ S +P++ ++ + + G DD + KP RE++AR+ I RR++ Sbjct: 81 LCRWLRSTSDIPILMLTARCEPTDRIIGLELGADDYMAKPFEPRELVARIQTILRRVRDE 140 Query: 123 NNRAETGPIRVFSD-----GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + T + G V PL E R+L + + +++ Q+ A Sbjct: 141 RSDQRTTIRFDAWRLNSVLRQLTAADGLVVPLSNAEFRLLRVFLERPHRVLSREQLLDAA 200 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 G EA + ++ +S+LR+KL + + + R GY D Sbjct: 201 RGRSIEAFD-RSIDLLVSRLRQKLGDDPKNPQLIKTVRGEGYLFD 244 >gi|88808922|ref|ZP_01124431.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. WH 7805] gi|88786864|gb|EAR18022.1| two component transcriptional regulator, winged helix family protein [Synechococcus sp. WH 7805] Length = 242 Score = 135 bits (339), Expect = 6e-30, Method: Composition-based stats. Identities = 45/236 (19%), Positives = 88/236 (37%), Gaps = 25/236 (10%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAF--------L 53 ++++D +++ +G + L ++ ++ L Sbjct: 14 LLVVEDDDSIRETVEEALRAEGFEVRACGDGAEAMNLLTAT-------DSMGVDLLVLDL 66 Query: 54 IGKGEKVLELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HH 105 + G L+L R +R ++ P++ IS S + + G DD + KP Sbjct: 67 MLPGLGGLDLCRQLRKLNNNTPVLVISARDSETDRVLGLEVGADDYLVKPFGLRELVARC 126 Query: 106 REILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRG 165 R +L R ++G + +F GE L +E +ILE L+ N Sbjct: 127 RALLRRSQQSESVSNQDRQVIQSGNLCLFVRECRVTRDGEDLTLSPKEYKILELLIQNPK 186 Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220 + ++ Q+ I+G+ D + V+ HI LR+K+ + + R GY Sbjct: 187 RVWSRDQLLERIWGI-DFVGDTKTVDVHIRWLREKIEEEPSSPQHIRTVRGFGYRF 241 >gi|315645110|ref|ZP_07898236.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] gi|315279531|gb|EFU42836.1| two component transcriptional regulator, winged helix family protein [Paenibacillus vortex V453] Length = 228 Score = 135 bits (339), Expect = 6e-30, Method: Composition-based stats. Identities = 49/222 (22%), Positives = 93/222 (41%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L+DD + ++G + E + S+ V ++ G L Sbjct: 9 ILLVDDEPHILQFLELGLRNEGFEVRSAPDGEQAVIVASNFEPHVVVLDVM--MPGMDGL 66 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119 E+ R ++ V +I ++ + + G DD + KP E+LAR+ A + Sbjct: 67 EVCRRLKEEGKDVAVIMLTAKDEIDDRVKGLTIGADDYMVKPFSFEELLARIQARLRNQF 126 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 G + ++ QGE L E ++L+ L+ G ++K+ I + ++ Sbjct: 127 PSLLGEIRLGSFTIDDRKKEIAYQGEALELSPTEYKLLKLLVTKHGSVLSKSNILNIVWD 186 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +D E+N+VE +I LR+KL +K + + R GY +D Sbjct: 187 -YDFGGEDNIVEVYIRSLREKLGDK-EHRVIRTLRGAGYRVD 226 >gi|302867106|ref|YP_003835743.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|302569965|gb|ADL46167.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] Length = 238 Score = 135 bits (339), Expect = 6e-30, Method: Composition-based stats. Identities = 44/225 (19%), Positives = 92/225 (40%), Gaps = 10/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD V D DG + D+ ++ G +E Sbjct: 12 LVVDDDRTVSDVVRRYLEQDGCRVRLSFDGPDALATAEEEPPDLVVLDLM--MPGLDGIE 69 Query: 63 LP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R+ R +P++ ++ + + G DD V KP RE++ R+ ++ RR Sbjct: 70 VCRRLRRRLPGLPVVMLTALGDEADRVAGLEVGADDYVTKPFSPRELVLRIRSVLRRAAP 129 Query: 122 SNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + G + +D R E G+ L RE +L +L+AN G+ ++ ++ + Sbjct: 130 QDRGPTGVLRDGDLTADTDRRVAERGGQPLSLTVREFDLLAFLLANPGRAWSRAELLDRV 189 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221 +G +++ V H+ +LR+K+ + + + +GY + Sbjct: 190 WGWR--FGDQSTVTVHVRRLREKIEDHPAQPRRIVTVWGVGYRYE 232 >gi|238024893|ref|YP_002909125.1| Two component transcriptional regulator [Burkholderia glumae BGR1] gi|237879558|gb|ACR31890.1| Two component transcriptional regulator, winged helix family protein [Burkholderia glumae BGR1] Length = 244 Score = 135 bits (339), Expect = 6e-30, Method: Composition-based stats. Identities = 51/228 (22%), Positives = 94/228 (41%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A + + D+ + + + D ++ L G L Sbjct: 7 ILIVEDDADIANVLALHLRDERYEVVHCANGDDGLRRLEQGGWDALILDLML--PGVDGL 64 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R RA P+I IS S + + G DD + KP E++ARV A+ RR++ Sbjct: 65 EICRRARAMARYTPIIIISARSSEVHRILGLELGADDYLAKPFSMLELVARVKALLRRVE 124 Query: 121 VSNNRAETGPIRV-------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + RV R+ V G L RE +L + + GK ++T + Sbjct: 125 ALSRDTRAEAGRVEVGGLRLDPLTREAAVDGAAIDLTPREFDLLYHFARHPGKAFSRTDL 184 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 +A++G + E+ V +HI++LR K+ + + + GY + Sbjct: 185 LNAVWG-YQHEGYEHTVNTHINRLRAKIEADPAQPARILTVWGRGYKL 231 >gi|210633428|ref|ZP_03297776.1| hypothetical protein COLSTE_01689 [Collinsella stercoris DSM 13279] gi|210159152|gb|EEA90123.1| hypothetical protein COLSTE_01689 [Collinsella stercoris DSM 13279] Length = 229 Score = 135 bits (339), Expect = 6e-30, Method: Composition-based stats. Identities = 56/224 (25%), Positives = 97/224 (43%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQ----SSAREDVSAIEAFLIGKG 57 +L++D L+ D L G S++ ++ + L + + ++ L Sbjct: 5 ILLVEDDPLIVDSLTELLAGSGYSVDTADTQQRAIELAVDSGGAHPYQLILLDVTLRQ-- 62 Query: 58 EKVLELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 + ++ VP+I ++ T+ G DD V KP RE+LAR+AA Sbjct: 63 GNGFAVCAAVKEATPDVPVIFLTASDDEFNTVTGLTMGADDYVAKPFRPRELLARIAATI 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 RR + S GPIR+ +D E +G L E R+L N GK + + +I A Sbjct: 123 RRSQPSRRVVSLGPIRIDTDRAYVEREGAELTLSALEYRLLLLFATNPGKLITRDKIRDA 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYS 219 ++ +EEN + +I +LR K+ + + + + R LGY Sbjct: 183 LWDSAGTYIEENTLSVYIKRLRDKIEGDPSRPELIQTVRGLGYK 226 >gi|116872936|ref|YP_849717.1| DNA-binding response regulator [Listeria welshimeri serovar 6b str. SLCC5334] gi|116741814|emb|CAK20938.1| DNA-binding response regulator [Listeria welshimeri serovar 6b str. SLCC5334] Length = 228 Score = 135 bits (339), Expect = 6e-30, Method: Composition-based stats. Identities = 39/228 (17%), Positives = 80/228 (35%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D V + F + + + + D++ I+ L + Sbjct: 3 LLMIEDNVSVCEMIEMFFMKEEIDATFVHDGKLGFETFFKDDFDIAIIDLML--PNMDGM 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAA 114 + R IR S VP+I ++ S + + G DD V KP ++ R Sbjct: 61 TICRKIREVSDVPIIILTAKESESDQVLGLEMGADDYVTKPFSPLTLMARIKAVTRRKNN 120 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + L +E +L +LM + + ++ Q+ Sbjct: 121 SSSNENEEDILETNYFKISKRTREIFYQGKLLDALTPKEFDLLYFLMQHPRQVFSREQLL 180 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 ++G + +E V+ HI +LR+K+ + + +GY D Sbjct: 181 EQVWG-YQFYGDERTVDVHIKRLRQKIATDTKP-FLHTVWGVGYKFDE 226 >gi|116493445|ref|YP_805180.1| DNA-binding response regulator [Pediococcus pentosaceus ATCC 25745] gi|116103595|gb|ABJ68738.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Pediococcus pentosaceus ATCC 25745] Length = 229 Score = 135 bits (339), Expect = 6e-30, Method: Composition-based stats. Identities = 37/225 (16%), Positives = 82/225 (36%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + ++G + + + D+S + ++ + Sbjct: 3 ILVVDDDKEIVELLDIYIKNEGYEPVSAYNGKEALSKLRT-DPDISLMILDIMMPEMDGM 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILA------RVAAI 115 ++ R +R S +P++ +S + +G DD V KP + E++A R + Sbjct: 62 QVVREVRKDSSLPILMLSAKTDDMDKIKGLLTGADDYVAKPFNPLEVMARVKSLLRRSEK 121 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 I + G+ L E IL L ++ + + +IF Sbjct: 122 DMTADEPEILDIGSLIINSDSHEVRTLAGKDVQLTALEFGILYLLASHPNRVFSADEIFE 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYS 219 ++ + + V H+S LR K+ G +++ +GY Sbjct: 182 RVW-QQESVISAKTVMVHVSHLRDKIEEATGGEKVIETVWGVGYK 225 >gi|325284509|ref|YP_004257048.1| two component transcriptional regulator, winged helix family [Deinococcus proteolyticus MRP] gi|324316683|gb|ADY27794.1| two component transcriptional regulator, winged helix family [Deinococcus proteolyticus MRP] Length = 221 Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 53/220 (24%), Positives = 94/220 (42%), Gaps = 8/220 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + A +G ++ + R D++ I+ L G ++ Sbjct: 5 LIVDDDPAILEILQAYLVAEGHTVLSASDGFGARE--GLPRADLAIIDWML--PGVSGMD 60 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R RA P++ ++ + L D GVDD V KP RE++ARV A+ RR+ V Sbjct: 61 LVREARAADMQLPILMLTARGEEEDKLRGLDFGVDDYVVKPFSPREVMARVRALLRRVGV 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + + G L + E +L L + G + ++ ++G Sbjct: 121 REEVSIGDL-SIDLRSHTASLSGLPLELSKLEFDLLTALAQHPGMAWTRERLLERVWG-S 178 Query: 182 DEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 D E VV+ HI+ LRKKL + +++ R +GY Sbjct: 179 DFLGTERVVDVHITGLRKKLGDTSDNPQFIETVRGVGYRF 218 >gi|322383169|ref|ZP_08056991.1| two-component response regulator YclK-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321152712|gb|EFX45343.1| two-component response regulator YclK-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 225 Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 44/226 (19%), Positives = 91/226 (40%), Gaps = 11/226 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++I+D + + DG S+ + D+ ++ L G E Sbjct: 1 MIIEDDTSIAEIERDFLEIDGFETTIATDGIEGLNQASTEKFDLILLDLML--PGIDGYE 58 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV- 121 + R IR ++VP++ ++ + G DD ++KP E++ARV A + + Sbjct: 59 ICRKIRGKTEVPILMVTARIEDADKIRGLGLGADDYISKPFSPTELVARVKANLAQYERL 118 Query: 122 ------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + GP+R+ + +E +L +L++N +K Q++ Sbjct: 119 TTGSVVRSEEVQVGPVRINRLTHRVYINNHELEFKNKEYELLLFLISNPDIVFSKEQLYE 178 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 I+G+ D + V HI++LR+K+ + + + GY Sbjct: 179 RIWGM-DAIGDLKTVAVHINRLREKIEKDPQNPVYIQTVWGTGYHF 223 >gi|229004154|ref|ZP_04161955.1| Two-component response regulator [Bacillus mycoides Rock1-4] gi|228757015|gb|EEM06259.1| Two-component response regulator [Bacillus mycoides Rock1-4] Length = 210 Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 37/215 (17%), Positives = 80/215 (37%), Gaps = 8/215 (3%) Query: 11 VKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH 70 ++ + G + + + + D ++ + + + IR Sbjct: 1 MRQLVGMYLDNFGYEWGEAENGKDALHMLDTDHYDFVILDIM--MPQMDGISVCKEIRKT 58 Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH---REILARVAAIYRRLKVSNNRAE 127 S VP+I ++ ++ G DD + KP + V Y + + + Sbjct: 59 SDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTKQEQQEEELQ 118 Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 G I + R E+ GE L +E +L +L + G+ ++ Q+ ++G +D A Sbjct: 119 FGSIVINEKSRRIEIDGEPISLTVKEFDLLYFLCGHNGQVFSREQLLEKVWG-YDYAGST 177 Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 V++H+ +R KL + + +GY + Sbjct: 178 RTVDTHVKTMRLKLGESGN--YIQTVWGVGYKFEV 210 >gi|168180732|ref|ZP_02615396.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|226949683|ref|YP_002804774.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] gi|182668403|gb|EDT80382.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|226842646|gb|ACO85312.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] Length = 226 Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 42/223 (18%), Positives = 87/223 (39%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G + N+ + D+ ++ L L Sbjct: 4 ILIVEDEEKLSRFIELELKHEGYEIVKANNGRTGLEIAEKGEADLVLLDIML--PEINGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117 E+ R +R S +P+I ++ ++ + D+G DD + KP I + Sbjct: 62 EVLRRLRRTSDIPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKKRIV 121 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 +K + G + + R L RE +L+ LM N+ + ++ + + Sbjct: 122 TVKKDEDIIRCGLLSLDKMRRKVMYDSTEIELTNREFNLLQILMENKNIVLTRSILMEKV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G +D E NV++ +I LR K+ + + + R +GY I Sbjct: 182 CG-YDYLGETNVIDVYIRFLRTKIDDAFKVKIITTVRGVGYVI 223 >gi|153854281|ref|ZP_01995580.1| hypothetical protein DORLON_01575 [Dorea longicatena DSM 13814] gi|149753056|gb|EDM62987.1| hypothetical protein DORLON_01575 [Dorea longicatena DSM 13814] Length = 236 Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 42/220 (19%), Positives = 94/220 (42%), Gaps = 6/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + + +G ++ + + D+ + Sbjct: 17 ILIVEDDKELSQLFQKVLEKNGYQVKSASDGAQALEVLDKEYIDLIISDIM--MPVMDGY 74 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-ARVAAIYRRL 119 EL +R A Q+P++ I+ S F SG DD + KP++ E++ A + R Sbjct: 75 ELVSELRSAGYQIPVLMITAKGSFDDMRQGFLSGSDDYMVKPVNVNEMVLRVGALLRRAQ 134 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++ ++ G D E LP++E +L L A+ G+ K Q+ ++G Sbjct: 135 ILNEHKIVIGSTEFDYDAMTVTTDKESLVLPKKEFLLLYKLAASPGRTFTKQQLMDEVWG 194 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 ++ + + +E HI ++R++ ++ F+ + + R +GY Sbjct: 195 -YETEADPHTIEVHIGRIRERFKDNPDFE-IVTMRGIGYK 232 >gi|49081994|gb|AAT50397.1| PA1799 [synthetic construct] Length = 236 Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 44/223 (19%), Positives = 88/223 (39%), Gaps = 7/223 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L++D + + G + + + + V ++ L G+ L+ Sbjct: 10 LLVEDDQKLARLIASFLSQHGFEVRQVHRGDAAFAAFLDFKPQVVVLDLML--PGQNGLQ 67 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR---EILARVAAIYRRL 119 + R IR + +P++ ++ + +SG DD V KPI L + + L Sbjct: 68 VCREIRRVANLPILILTAQEDDLDHILGLESGADDYVIKPIEPPVLLARLRALMRRHAPL 127 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S G + + R+ E++G L E +L L + G+ +++ +I + I G Sbjct: 128 PASPESLTFGKLNIDRRRREAELEGLGIELTTMEFELLWLLASQAGEILSRDEILNQIRG 187 Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 + V+ ISKLR KL++ + + GY + Sbjct: 188 IG-FDGLNRSVDVCISKLRNKLKDNPREPVRIKTVWGKGYLFN 229 >gi|152975591|ref|YP_001375108.1| two component transcriptional regulator [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152024343|gb|ABS22113.1| two component transcriptional regulator, winged helix family [Bacillus cytotoxicus NVH 391-98] Length = 232 Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 43/231 (18%), Positives = 82/231 (35%), Gaps = 13/231 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD + + ++G + + + S D+ ++ L Sbjct: 5 ILIIDDDKEIVELLAVYLRNEGYDIYKAYDGDEALQMLSMYEIDLMILDIM--MPKRNGL 62 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL--------ARV 112 E+ + +R H+ P++ +S + +G DD + KP + E++ Sbjct: 63 EVCQQVREHNNTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELMARVKALLRRSS 122 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + I + +V GE L E IL L +N G+ + + Sbjct: 123 FQQTISQVNEDGMIRIRSIEIHKHNHTVKVNGENIKLTSIEFDILYLLASNTGRVFSSEE 182 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSIDW 222 IF ++ D V HIS LR KL + + + +GY I+ Sbjct: 183 IFERVWNE-DGYGSNKTVMVHISNLRDKLETGINTEKIIHTVWGVGYKIEK 232 >gi|296445314|ref|ZP_06887272.1| two component transcriptional regulator, winged helix family [Methylosinus trichosporium OB3b] gi|296257075|gb|EFH04144.1| two component transcriptional regulator, winged helix family [Methylosinus trichosporium OB3b] Length = 243 Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 43/229 (18%), Positives = 85/229 (37%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D A + + + + ++ D+ ++ L GE L Sbjct: 11 ILLVEDDAEIGELISRYLATHQIEAAVVADGRAMDATLAARDFDLVILDLNL--PGEDGL 68 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R +R + +P+I ++ + + G DD + KP + RE+LARV ++ RR + Sbjct: 69 SICRRLRDGANLPIIIVTAQGEDVDRIIGLEMGADDYIVKPFNPRELLARVRSVLRRSRA 128 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF---------PLPRRERRILEYLMANRGKRVAKTQ 172 S E R + L E +L L + + + Q Sbjct: 129 SAQTKEPAGGRFYQFEGWRVDIMAHQVTAPTGMKIALTGAEFDLLYALCERPNRVLTRDQ 188 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + +G + ++ IS+LR+KL + + + R GY Sbjct: 189 LIGLTHGPTASPFQ-RSIDVLISRLRQKLESDPKNPKLIQTVRSEGYLF 236 >gi|283781851|ref|YP_003372606.1| two component transcriptional regulator, winged helix family [Pirellula staleyi DSM 6068] gi|283440304|gb|ADB18746.1| two component transcriptional regulator, winged helix family [Pirellula staleyi DSM 6068] Length = 235 Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 40/222 (18%), Positives = 84/222 (37%), Gaps = 7/222 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++I+D A ++ A +G ++ +S + +S D+ ++ L E Sbjct: 14 LIIEDEAPIRKMLRASLTSEGYRIQEASSAAEGLKIATSPPPDLILLDLGL--PDRDGQE 71 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRRL 119 + +R P+I +S + D G DD V KP E + R Sbjct: 72 VLEQLREWYTSPIIILSARDQESQKIKALDHGADDYVTKPFSMGELLARMRTALRHSHRT 131 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 G ++V R + E L E ++L ++ + GK + + ++G Sbjct: 132 GTEATATTIGDLKVDFASRLVYRKQEEVHLTPLEYKLLITMIKHAGKVLTHRFLLREVWG 191 Query: 180 LFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 D E + + ++ LR+K+ + + +++ +GY Sbjct: 192 PQDSQ-ENHYLRVFVAGLRRKIEVDPARPQYILTEQGVGYRF 232 >gi|87199648|ref|YP_496905.1| two component transcriptional regulator [Novosphingobium aromaticivorans DSM 12444] gi|87135329|gb|ABD26071.1| two component transcriptional regulator, winged helix family [Novosphingobium aromaticivorans DSM 12444] Length = 227 Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 48/227 (21%), Positives = 88/227 (38%), Gaps = 12/227 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + +G + L +S D ++ L Sbjct: 3 ILIIEDEIELAGALHRGLTQEGCKVTLATDGSTGLELAASLAFDFILLDVNL--PDMDGF 60 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARVA 113 E+ +R S +P+I ++ + + G DD + KP I R+A Sbjct: 61 EVCARLREQGSTMPIIMVTARDEIADRIRGLKGGADDYLTKPFAFEELLARMDAIKRRMA 120 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + R G + G L +E +L LM + G +++T+I Sbjct: 121 PSQGGKVQPDGRITVGDLHFDPRTMTLTRAGTPVQLTVKEMGVLRLLMESPGTVISRTEI 180 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 A++G+ D N+VE ++S+LR+KL + LG V++ R GY + Sbjct: 181 LRAVWGMED-DPLTNIVEVYLSRLRRKL-HALGPPVVENVRGFGYRL 225 >gi|30018835|ref|NP_830466.1| two-component response regulator [Bacillus cereus ATCC 14579] gi|296501409|ref|YP_003663109.1| two-component response regulator [Bacillus thuringiensis BMB171] gi|29894377|gb|AAP07667.1| Two-component response regulator [Bacillus cereus ATCC 14579] gi|296322461|gb|ADH05389.1| two-component response regulator [Bacillus thuringiensis BMB171] Length = 225 Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 43/220 (19%), Positives = 75/220 (34%), Gaps = 6/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L+DD + + G + S E + ++ Sbjct: 4 ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENQNFKFVLLDIM--MPKMDGW 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E + IR+ S +P+I ++ + G DD V KP H E+ R Sbjct: 62 ETCKKIRSFSNIPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEEL-FARIEAVLRRTN 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + + I V E L E +L + + + + Q+ I+GL Sbjct: 121 EHKQIQYHGIVWDETKHFVSVHNEELLLTPIEFSLLGLFLRHVNYVLNRDQLIERIWGL- 179 Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219 + E+ V+SHI LR KLR + + +GY Sbjct: 180 NTNTEDRTVDSHIRNLRDKLRKANFPIDHHLKTVYGVGYR 219 >gi|87121478|ref|ZP_01077367.1| DNA-binding response regulator [Marinomonas sp. MED121] gi|86163321|gb|EAQ64597.1| DNA-binding response regulator [Marinomonas sp. MED121] Length = 239 Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 44/228 (19%), Positives = 84/228 (36%), Gaps = 13/228 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD ++ G+ +E + E S A DV ++ GE L Sbjct: 8 LVVDDHLEIRTLLAEYLHKHGMRVETADGGESMRQQLSRASFDVIVLDLM--MPGEDGLT 65 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARVA 113 L R IR S +P+I ++ + + G DD + KP RE ++ Sbjct: 66 LCRNIREKSAIPVIMLTAMGEEADRIIGIEMGADDYITKPFSARELLARIKALVKRSKSM 125 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + ++ R+ PL E R+L + N +++ Q+ Sbjct: 126 PYQGEANQESKQFSFLNWQLNPIKRELVSDQNTIPLSSAEFRLLTVFLENPKHVLSRDQL 185 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 G V + +++ IS+LRKK+ + + + + GY Sbjct: 186 TEMTKG-HTAGVFDRSIDNQISRLRKKIEIDPKTPEILKTVWGGGYIF 232 >gi|332297646|ref|YP_004439568.1| two component transcriptional regulator, winged helix family [Treponema brennaborense DSM 12168] gi|332180749|gb|AEE16437.1| two component transcriptional regulator, winged helix family [Treponema brennaborense DSM 12168] Length = 238 Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 90/228 (39%), Gaps = 13/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + + + G +G+ S E + D+ ++ L G Sbjct: 5 ILVIEDVSELAELVALYLGKEGMEAVTVESAEAAFDALETFSPDLVLLDLNL--PGMDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E R P++ +S + + + G D+ + KP R ++ARV A+ RR++ Sbjct: 63 EFLHKFRKTHSTPVLIVSARDADEDIISGLGGGADEYITKPFSPRVLVARVRAMIRRVQD 122 Query: 122 --------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 S G + GE PL +E IL +L+ N G+ + I Sbjct: 123 ATSESAAASEQVFCFGDFTLHLSSCVLTRSGERIPLSAKEYAILSFLVKNAGRPLTPAVI 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + ++ + + + V +I +LRKK+ + +++ +GY Sbjct: 183 YDEVW--KNAYGDLSAVAVYIQRLRKKIEADPADPRFIETVFGMGYRF 228 >gi|227524257|ref|ZP_03954306.1| response regulator [Lactobacillus hilgardii ATCC 8290] gi|227088488|gb|EEI23800.1| response regulator [Lactobacillus hilgardii ATCC 8290] Length = 245 Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 48/237 (20%), Positives = 90/237 (37%), Gaps = 19/237 (8%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D V + F +G + + + E I L + + Sbjct: 3 LLMIEDNKSVSEMMSMFFQKEGWDVSFAYDGIEAVDMFNEDPESWDMITLDLNLPKKDGM 62 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ + IRA S+ VP+I ++ S + F+ G DD V KP ++AR+ A+ RR Sbjct: 63 EVAKEIRAKSKSVPIIMLTARDSDSDQVLGFEMGADDYVTKPFSPITLVARIKALQRRAH 122 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEV----------------FPLPRRERRILEYLMANR 164 E L +E +L L Sbjct: 123 TEAQVEEPEHSEEEQKKEYQITTEHFKLNTNTREAYLDGQLIPELTPKEFELLNALAQKP 182 Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + ++ Q+ ++G ++ +E V++HI KLR+K+ ++G + + +GY D Sbjct: 183 RQVFSREQLLELVWG-YEYYGDERTVDAHIKKLRQKIE-RVGPQVIQTVWGVGYKFD 237 >gi|223985835|ref|ZP_03635876.1| hypothetical protein HOLDEFILI_03182 [Holdemania filiformis DSM 12042] gi|223962225|gb|EEF66696.1| hypothetical protein HOLDEFILI_03182 [Holdemania filiformis DSM 12042] Length = 223 Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 45/221 (20%), Positives = 93/221 (42%), Gaps = 6/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++++ +G + + L D ++ Sbjct: 7 ILIVDDEQMIREVVREYALINGYEVAEASDGLEALELVEKEDFDCVILDIM--MPKLDGF 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + I+ +P+I +S L F+ GVDD V KP +E++ARV I R K Sbjct: 65 SACKQIKKIKPIPIIMLSARQEEYDKLFGFELGVDDYVVKPFSPKELMARVKVILERFKT 124 Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + ++ +GR V GE L +E +L Y++ N+ +++ ++ ++ Sbjct: 125 KDTEVLRFEGLQINIEGRSVTVDGEKANLTPKEIDLLLYMVKNKNIALSRMKLLEEVWD- 183 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +D ++ V++HI LR L++ + + R +GY + Sbjct: 184 YDYFGDDRTVDTHIKMLRHNLKDY--RKFIVTVRGMGYKFE 222 >gi|160894201|ref|ZP_02074979.1| hypothetical protein CLOL250_01755 [Clostridium sp. L2-50] gi|156864234|gb|EDO57665.1| hypothetical protein CLOL250_01755 [Clostridium sp. L2-50] Length = 253 Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 90/228 (39%), Gaps = 9/228 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ G + + + L D+ I ++ Sbjct: 27 ILIVDDEKDIRKLVGIYLKRQGYQILEAENGKQAIDLVRENS-DIDLIIMDIMMPEMSGT 85 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E IR S VP++ ++ + +D+G DD ++KP E++ +V A+ RR + Sbjct: 86 ESCSAIREFSSVPVLFLTAKTQEPDKNEAYDTGGDDFLSKPFEQSELVRKVKALIRRYNI 145 Query: 122 SNNRAETGP-------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 R + I + R EV L +E +L +L+ NRG+ +++ Sbjct: 146 YKGREDNNDGILRVGAISIDPYKRVVTKDNEVIHLTDKEFALLFFLVKNRGRSWNLDELY 205 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221 I+ N V H+ +LR+K+ + + + + GY +D Sbjct: 206 ENIWQEKYLPSSSNTVMVHVLRLRQKIEDNPAQPEIIRTIYGKGYQVD 253 >gi|293605203|ref|ZP_06687591.1| response regulator [Achromobacter piechaudii ATCC 43553] gi|292816388|gb|EFF75481.1| response regulator [Achromobacter piechaudii ATCC 43553] Length = 233 Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 42/222 (18%), Positives = 87/222 (39%), Gaps = 7/222 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L++D + G ++ + R D + L+ G L+ Sbjct: 5 LLVEDDPKLSRLIAQFLEQHGFNVAQAYRGDHAVEAFR--RHDPAITILDLMLPGRDGLQ 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR---EILARVAAIYRRL 119 + R +RA S P++ ++ + +SG DD V KP+ R + + + + Sbjct: 63 VCRDLRAFSSAPILMLTAREDDLDQILGLESGADDYVIKPVEPRVLLARIRALLRRHNKG 122 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + ++ E GP+ + R G L E +L L + G+ + + + +A+ G Sbjct: 123 QEQADQLEFGPLSIDRHTRSVRHAGVEVDLTTMEFEMLWALASQAGQVLTRDDLLNAVRG 182 Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 + + + V+ +SKLR+KL + + + GY Sbjct: 183 I-EFNGLDRSVDVCVSKLRRKLDDDPRDPARIKTIWGKGYLF 223 >gi|225871922|ref|YP_002753376.1| DNA-binding response regulator [Acidobacterium capsulatum ATCC 51196] gi|225793413|gb|ACO33503.1| DNA-binding response regulator [Acidobacterium capsulatum ATCC 51196] Length = 234 Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 50/218 (22%), Positives = 95/218 (43%), Gaps = 5/218 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61 +L+DD + ++G ++ E L + D+ ++ L G +VL Sbjct: 4 LLVDDDGALTRFLERGLAEEGYTVTSAADGEAALELLEAMLPDLVVLDLNLPRRDGTEVL 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 R A +VP++ ++ + + + D G DD + KP E+ AR A+ RR Sbjct: 64 AALRARHA--EVPVLVLTGRSEVASRVRCLDLGADDCLLKPFSLAELKARCRALLRRRGG 121 Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + V + G L R E +LE LM +RG+ V++ ++ ++ Sbjct: 122 TAHLVLRHEDLEVNRVEHTVQRGGREVALTRTEYALLECLMLHRGRPVSRARLLEEVWHE 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 E N+V+ +++ LR+KL ++ + + R LGY Sbjct: 182 SAENG-TNIVDVYVNYLRRKLGDEGPAPLIQTVRGLGY 218 >gi|291326185|ref|ZP_06123519.2| DNA-binding response regulator BaeS [Providencia rettgeri DSM 1131] gi|291315319|gb|EFE55772.1| DNA-binding response regulator BaeS [Providencia rettgeri DSM 1131] Length = 237 Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 39/229 (17%), Positives = 79/229 (34%), Gaps = 11/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + + + ++ L G + Sbjct: 11 ILVVEDEPKLGQLLFDYLQAANYQPALIARGDQVIDYVKQHQPALILLDLML--PGMDGI 68 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVAA 114 + R +R S VP+I ++ L + G DD + KP RE++ R Sbjct: 69 SVCRELRKFSDVPIIMVTAKTEEIDRLLGLEIGADDYICKPFSPREVVARVKTILRRCQP 128 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N + + + ++ L E R+L+++ N G ++ Q+ Sbjct: 129 NMTTSNSQTNSNNQTKLIIDENAFQVRYGSQLLELTPAEFRLLKFMSDNAGMVFSRDQLL 188 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDW 222 +Y V + ++SH+ LR+KL + + S LGY D Sbjct: 189 DILYDDH-RVVTDRTIDSHVKNLRRKLESLDNEKTFIRSIYGLGYRWDE 236 >gi|152986242|ref|YP_001347715.1| putative two-component response regulator [Pseudomonas aeruginosa PA7] gi|150961400|gb|ABR83425.1| probable two-component response regulator [Pseudomonas aeruginosa PA7] Length = 228 Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 42/224 (18%), Positives = 96/224 (42%), Gaps = 6/224 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G +++ + E L D+ ++ L G Sbjct: 5 LLIVEDEPRIGQYLRQGLAESGYAVDLSDDGNEGEQLALGGDYDLLILDVML--PGRDGW 62 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118 ++ R +R P++ ++ +++ + + G DD + KP E+LARV Sbjct: 63 QILRSVRDAGMTVPVLFLTARDAVEDRVRGLEQGADDYLVKPFAFVELLARVRTLLRRGN 122 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++ + + + R + QG+ L +E +LE L+ G+ + K+ I S ++ Sbjct: 123 QQLQETTLQLADLELDLLRRRVQRQGKRIDLTAKEFALLELLLRRSGEVLPKSLIASQVW 182 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + + + NV+E I +LR K+ + + + R +GY ++ Sbjct: 183 DM-NFDSDTNVIEVAIRRLRAKVDDDFPQRLIHTVRGMGYVLEE 225 >gi|241668018|ref|ZP_04755596.1| response regulator receiver protein [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876552|ref|ZP_05249262.1| conserved hypothetical protein [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842573|gb|EET20987.1| conserved hypothetical protein [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 229 Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 54/223 (24%), Positives = 96/223 (43%), Gaps = 8/223 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++ DD + F ++G+ + + +L ++ DV I+ + Sbjct: 8 LVADDDKKIAQFIKTKFEENGIETTLAHDGKEALFLINTNNYDVVVIDWM--MPYLDGIS 65 Query: 63 LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L +I+R + P+I +S S + + SG DD + KP E++ RV +Y+R K Sbjct: 66 LLKILRKQNVTTPVIILSALDSTENKIQGLTSGSDDYLTKPFSIDELMVRVNILYKRTKQ 125 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFP----LPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + L +RE ++L L+ ++ + V+KT I + Sbjct: 126 IAEAQSHKLTCGDIILDELAHEVRRNDELILLQQREYKVLHLLLKHKNEVVSKTMILKEV 185 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + +D + NVVE HIS+LR KL DP+ + R GY I Sbjct: 186 WD-YDFDPQTNVVEVHISRLRNKLTENGLPDPIKTIRGFGYVI 227 >gi|242280512|ref|YP_002992641.1| transcriptional regulator [Desulfovibrio salexigens DSM 2638] gi|242123406|gb|ACS81102.1| two component transcriptional regulator, winged helix family [Desulfovibrio salexigens DSM 2638] Length = 232 Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 50/225 (22%), Positives = 97/225 (43%), Gaps = 10/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD A ++ G + S E ++ + ++ G+ LE Sbjct: 8 LIVDDDAKLRALLTQYLEGYGYEVSTLPSGEGIIEEVKTSSPAIVILDIM--MPGKDGLE 65 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +R HS VP+I ++ + + G DD ++KP + RE+LAR+ A+ RR K Sbjct: 66 VLRDLRPHSNVPVIMLTAKGEDTDRIVGLELGADDYISKPFNPRELLARIKAVLRRAKGP 125 Query: 123 NNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 N + E++G+ L E ++L+ LM N G+ + + + ++ Sbjct: 126 ENNNPNSGQINVAGVVLHVAHQKLEIEGDSLELSSTEFKLLKALMDNPGRPMTRDDLMTS 185 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFD-PVDSKRFLGYSI 220 ++G D + ++ HISKLR + + + + GY Sbjct: 186 VWGK-DFNAFDRSIDVHISKLRALFKPYPDHESRIKTVWGTGYMF 229 >gi|24375869|ref|NP_719912.1| DNA-binding response regulator [Shewanella oneidensis MR-1] gi|24350836|gb|AAN57356.1|AE015872_7 DNA-binding response regulator [Shewanella oneidensis MR-1] Length = 227 Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 43/225 (19%), Positives = 85/225 (37%), Gaps = 10/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ +D ++ G + +G S+ ++ + + D ++ Sbjct: 3 ILIAEDDIHIRQGLADMLSREGYSVLLADNGKVALLKYQQEQPDFIILDIM--MPELDGY 60 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + + IR H Q P+I +S + + G DD +NKP E+ AR+ I RR Sbjct: 61 SVCKEIRKHDEQTPVIFLSAKGEELDKVLGLELGADDYINKPFGIHEVRARIKTIARRCL 120 Query: 121 VSNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + + + Q + L RE +IL L + + V + + Sbjct: 121 KAKQNSPDQSFIFGDLTIYPMELCAKRQQQTIELSLREIKILSCLHRYKNQIVTRDMLLD 180 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219 ++G+ D ++ HISKLRK + + + + GY Sbjct: 181 WVWGV-DHLPNSRTLDQHISKLRKMIESDPNTPLLIKTIHGYGYR 224 >gi|325264701|ref|ZP_08131430.1| DNA-binding response regulator [Clostridium sp. D5] gi|324029993|gb|EGB91279.1| DNA-binding response regulator [Clostridium sp. D5] Length = 232 Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 48/227 (21%), Positives = 92/227 (40%), Gaps = 9/227 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + DG S + L D+ ++ L G + L Sbjct: 6 ILIVEDDTDINHLLHRILMQDGYDTIQAFSGTEAKLLLRLEAPDLILLDLMLPGMSGEEL 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + +P++ +S L+T + +G DD + KP +E+LARV A RR K+ Sbjct: 66 IVTVREEMGLDLPILVLSAKAGLETKVAALKNGADDYLTKPFEPQEVLARVYAALRRYKI 125 Query: 122 -------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + D R E+ G+ PL E IL L+ + K ++ ++ Sbjct: 126 EAGKTEKETAFYTYKKLNLHPDSRKAEISGQELPLTMHEYDILYLLIKDPEKVYSRENLY 185 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220 ++ E+N V H+S LR+KL + + + +G+ + Sbjct: 186 EQVW-KGGYYGEDNTVNVHVSNLRRKLSAADPEEEYIRTVWGIGFKM 231 >gi|291009674|ref|ZP_06567647.1| two-component response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 223 Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 40/219 (18%), Positives = 84/219 (38%), Gaps = 7/219 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + + +G + + D+ ++ L G ++ Sbjct: 6 LVVDDDPALAEMLTIVLRGEGFETAVVSDGTKAMPALRELKPDLVLLDLML--PGMNGID 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + IR S VP++ ++ + +SG DD V KP +E++AR+ A RR Sbjct: 64 VCKAIRTESVVPIVMLTAKSDTVDVVLGLESGADDYVVKPFKPKELVARLRARLRRTDAE 123 Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + G + G+ L E +L L + + + ++G + Sbjct: 124 PAEVLSIGDLTIDVPGHEVTRDGQPIALTPLEFDLLVALARKPRQVFTREVLLEQVWG-Y 182 Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219 A + +V +LR K+ + V + R +GY Sbjct: 183 RHAADTRLVNVQ--RLRSKVERDPERPEVVLTVRGVGYK 219 >gi|169334592|ref|ZP_02861785.1| hypothetical protein ANASTE_00995 [Anaerofustis stercorihominis DSM 17244] gi|169259309|gb|EDS73275.1| hypothetical protein ANASTE_00995 [Anaerofustis stercorihominis DSM 17244] Length = 236 Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 44/235 (18%), Positives = 91/235 (38%), Gaps = 18/235 (7%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++D + G ++ + + + RED+ ++ + Sbjct: 5 ILIVEDEKGIRDAIKIYLNNQGYNVFEAENGKEGLEVL--NREDIHLAIVDIMMPVMDGI 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + +R +P+I +S + + G DD V KP E++ARV + RR Sbjct: 63 TMTMRLRETYDIPVIFLSAKSEDIDKITGLNIGADDYVTKPFASMELIARVNSQIRRYDQ 122 Query: 122 SNNRAETGPIRV-------------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 N + D ++ V G L +E +IL L+ G+ Sbjct: 123 ILNLKHSSIKEEENSNRYVVGGLELDDDTKEVTVDGNKVKLTAKEYQILRLLIKTPGRVY 182 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 + QI+ ++ ++A+ + HI KLR+K+ N + +GY ++ Sbjct: 183 SSEQIYEQVWN--EKAINTETIMVHIRKLREKIEVNPKKPHYIKVVWGIGYKMEK 235 >gi|315303259|ref|ZP_07873903.1| transcriptional regulatory protein SrrA [Listeria ivanovii FSL F6-596] gi|313628371|gb|EFR96860.1| transcriptional regulatory protein SrrA [Listeria ivanovii FSL F6-596] Length = 228 Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 43/228 (18%), Positives = 89/228 (39%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D V + F + ++ + + D++ I+ L + Sbjct: 3 LLMIEDNVSVCEMIEMFFMKEEINATFVHDGKLGYETFLKEDFDIAIIDLML--PNMDGM 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 + R IR S +P+I ++ S + + G DD V KP ++AR+ A+ RR Sbjct: 61 TICRKIREVSDMPIIILTAKESESDQVLGLEMGADDYVTKPFSPLTLMARIKAVTRRKNS 120 Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + T + L +E +L +LM + + ++ Q+ Sbjct: 121 STLAETDEDILETTYFKISKRTREIFYQGELLDALTPKEFDLLYFLMKHPRQVFSREQLL 180 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 ++G + +E V+ HI +LR+K+ + + + +GY D Sbjct: 181 EQVWG-YQFYGDERTVDVHIKRLRQKIATETKP-FLHTIWGVGYKFDE 226 >gi|169827613|ref|YP_001697771.1| putative sensory transduction protein [Lysinibacillus sphaericus C3-41] gi|168992101|gb|ACA39641.1| Hypothetical sensory transduction protein [Lysinibacillus sphaericus C3-41] Length = 220 Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 41/219 (18%), Positives = 96/219 (43%), Gaps = 5/219 (2%) Query: 5 IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64 +DD A +++ ++G+ + +S + D+ ++ L Sbjct: 2 VDDDAHIRELVRVFLQNEGLEVIEATDGVDALSKLASEKVDMVIMDIM--MPNMDGWALC 59 Query: 65 RIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123 IR++ P++ ++ + F G DD + KP E++ RV +I +R +++ Sbjct: 60 EEIRSYHTDLPILMLTAKGETAQKVKGFHLGTDDYLVKPFEPAELIVRVKSILKRYRIAL 119 Query: 124 NRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 ++ + ++ GE+ L +E +L L + GK ++ Q+ I+G +D Sbjct: 120 SQVVEVGNVKLNRHTHEVDLNGEIIVLRLKEFELLFTLASYVGKTFSREQLIEEIWG-YD 178 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +E ++ HI ++R++ ++ + + R LGY ++ Sbjct: 179 YEGDERTIDVHIKRIRERFPQEISGFVIRTLRGLGYRLE 217 >gi|108759259|ref|YP_632949.1| phosphate regulon transcriptional regulatory protein PhoB [Myxococcus xanthus DK 1622] gi|108463139|gb|ABF88324.1| phosphate regulon transcriptional regulatory protein PhoB [Myxococcus xanthus DK 1622] Length = 229 Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 49/222 (22%), Positives = 93/222 (41%), Gaps = 7/222 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61 ++IDD + + G++ ++ E D+ ++ L G V Sbjct: 5 LIIDDERDLAELIDFNLRGSGLTTHVSHTGEEALVAAREQNPDLVLLDLMLPDMSGIDVC 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 R V ++ ++ + F+ G DD V KP RE++ R+ AI RR Sbjct: 65 RQLRASPQSRGVLIVMLTAKGEESDRIRGFEVGADDYVVKPFSVRELVLRLKAILRRGAP 124 Query: 122 SNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + GP+R+ V+ L E R+LE+L+A G+ + Q+ ++ Sbjct: 125 TAGGTAPLALGPLRLDVASHRFFVEDREVALTALEFRLLEHLLARLGRVQTREQLLEEVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 GL ++E +++H+ +LR KL +++ R +GY + Sbjct: 185 GLS-SSLETRTIDTHVMRLRDKLG--PARALLETVRGVGYRM 223 >gi|229083888|ref|ZP_04216195.1| Two-component response regulator [Bacillus cereus Rock3-44] gi|228699409|gb|EEL52087.1| Two-component response regulator [Bacillus cereus Rock3-44] Length = 230 Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 44/220 (20%), Positives = 76/220 (34%), Gaps = 6/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L+DD + + G + S + ++ Sbjct: 4 ILLVDDEPRMLELLTLYLTPRGYNCISAISGQEAISYIEKQSFKFILLDIM--MPEMDGW 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E R IR+ S VP+I ++ + G DD + KP H E+ R Sbjct: 62 ETCRKIRSFSNVPIIMVTARDQTIDVVQGLKIGADDYITKPFHEDEL-LARIEAVLRRSN 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + I V G+ L E +L + + +++ Q+ I+GL Sbjct: 121 QHELIQYKGILWDEAKHFISVHGQELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGL- 179 Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219 D E+ V+SHI LR KLR + + + +GY Sbjct: 180 DATTEDRTVDSHIRNLRDKLRKAKFPIDEHLKTVYGVGYR 219 >gi|227513040|ref|ZP_03943089.1| response regulator [Lactobacillus buchneri ATCC 11577] gi|227083797|gb|EEI19109.1| response regulator [Lactobacillus buchneri ATCC 11577] Length = 245 Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 48/237 (20%), Positives = 90/237 (37%), Gaps = 19/237 (8%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D V + F +G + + + E I L + + Sbjct: 3 LLMIEDNKSVSEMMSMFFQKEGWDVSFAYDGIEAVDMFNEDPESWDMITLDLNLPKKDGM 62 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ + IRA S+ VP+I ++ S + F+ G DD V KP ++AR+ A+ RR Sbjct: 63 EVAKEIRAKSKSVPIIMLTARDSDSDQVLGFEMGADDYVTKPFSPITLVARIKALQRRAH 122 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEV----------------FPLPRRERRILEYLMANR 164 E L +E +L L Sbjct: 123 TEAQVEEPEHSEEKQKKEYQITTEHFKLNTNTREAYLDGQLIPELTPKEFELLNALAQKP 182 Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + ++ Q+ ++G ++ +E V++HI KLR+K+ ++G + + +GY D Sbjct: 183 RQVFSREQLLELVWG-YEYYGDERTVDAHIKKLRQKIE-RVGPQVIQTVWGVGYKFD 237 >gi|113952901|ref|YP_731779.1| DNA-binding response regulator RpaA [Synechococcus sp. CC9311] gi|113880252|gb|ABI45210.1| DNA-binding response regulator RpaA [Synechococcus sp. CC9311] Length = 266 Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 41/230 (17%), Positives = 85/230 (36%), Gaps = 11/230 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +LI+D + + G ++ + + L D+ ++ L G + Sbjct: 5 ILLIEDDRDMSELVGGHLEHSGFDVQRADDGIKGQALALQYTPDLILLDLMLPNVDGLTL 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R + +P++ ++ + + F+SG DD + KP E+ ARV A+ RR Sbjct: 65 CQRLRRDERTASIPILMLTALGGTKDKVSGFNSGADDYLTKPFDLEELQARVKALLRRSD 124 Query: 121 VSNNRAETGPIRVFSD--------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + S + L E +L L+ G+ VA + Sbjct: 125 RAPIGTSGNHHEILSYGPLTLVPERFEAIWFDHPVRLTHLEFELLHCLLQRHGQTVAPSL 184 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 I ++G ++ + + H+ LR KL + + + GY ++ Sbjct: 185 ILKEVWG-YEPDDDIETIRVHVRHLRTKLEPDPRKPRFIKTVYGAGYCLE 233 >gi|294678417|ref|YP_003579032.1| transcriptional regulatory protein BaeR [Rhodobacter capsulatus SB 1003] gi|294477237|gb|ADE86625.1| transcriptional regulatory protein BaeR [Rhodobacter capsulatus SB 1003] Length = 232 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 48/227 (21%), Positives = 85/227 (37%), Gaps = 10/227 (4%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + ++I+D + + + F +G + R D+ ++ L G Sbjct: 5 LILIIEDEPEIAEILESYFAREGFRVICAGDGPLGLAHHQRLRPDLVVLDIKL--PGLDG 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ IR + P+I ++ L G DD V KP + EI+AR A+ RR Sbjct: 63 YEVLATIRRRGETPVIMVTALAEDLDKLQALRIGADDYVVKPFNPLEIVARARAVLRRTL 122 Query: 121 VSNNR------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + + L E RIL ++ A G+ A+ + Sbjct: 123 GRAPETLLRLGPLSVDPQAIRAVVETAAGPVPLDLTPTEFRILAHMAAAPGRAFARADLV 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 A L + + V+SH+S LR+KL + R +GY ++ Sbjct: 183 DAC--LPEGEALDRTVDSHVSNLRRKLSAAGAEGLLTGVRGIGYRLE 227 >gi|326317379|ref|YP_004235051.1| two component transcriptional regulator PhoB, winged helix family [Acidovorax avenae subsp. avenae ATCC 19860] gi|323374215|gb|ADX46484.1| two component transcriptional regulator PhoB, winged helix family [Acidovorax avenae subsp. avenae ATCC 19860] Length = 235 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 42/223 (18%), Positives = 91/223 (40%), Gaps = 10/223 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + + + +G E + + DV ++ L G+ L+ Sbjct: 8 LIVEDESAIAELIAVNLRHNGFQPIWSEDGESAQRELDAVLPDVILLDWML--PGQSGLQ 65 Query: 63 LPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYR 117 L R RA +P++ ++ + D+G DD + KP +E+ R R Sbjct: 66 LARKWRADARTKPIPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIRAVLRRR 125 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + + + + + QG+ + E ++L YLM + + ++ Q+ + Sbjct: 126 APEQATDTVAISDLILDAGTYRVTYQGQQLKIGPTEFKLLHYLMKHPERVHSRAQLLDKV 185 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G +EE V+ H+ +LR+ L V++ R GY + Sbjct: 186 WGDH-VFIEERTVDVHVKRLREALGVAGA--MVETVRGAGYRL 225 >gi|255020849|ref|ZP_05292905.1| two component transcriptional regulator, winged helix family [Acidithiobacillus caldus ATCC 51756] gi|254969640|gb|EET27146.1| two component transcriptional regulator, winged helix family [Acidithiobacillus caldus ATCC 51756] Length = 247 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 40/221 (18%), Positives = 84/221 (38%), Gaps = 5/221 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + +G+ + ++ ++ DV ++ L G G+ + Sbjct: 5 LIVDDDQRLAALLQDFLQAEGMVVRTASNGREMWQQLAAEPVDVVVMDWMLPG-GQDGIS 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDV--VNKPIHHREILARVAAIYRRLK 120 L R +RA S P++ +S + + +SGV+D RV Sbjct: 64 LVRELRAKSGPPILMLSARGEEEERIHGLESGVEDYLAKPFNARELLARLRVLLRRAGRG 123 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 S GP + R +GEV L E +L + +++ + A+ G Sbjct: 124 DSGRVLHFGPFVLDLVERRLFREGEVVELSPAEMDLLLVFAQRPNRALSRDHLLQAL-GG 182 Query: 181 FDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 D+ + ++ +++LRK + + ++R +GY Sbjct: 183 DDDGRFDRSIDVRVTRLRKLIEENPRQPRFLRTERGVGYRF 223 >gi|237798950|ref|ZP_04587411.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021804|gb|EGI01861.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 225 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 54/223 (24%), Positives = 105/223 (47%), Gaps = 5/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D AL++ + G +E + E + + D++ I+ L G L Sbjct: 3 LLVVEDEALLRHHLRTRLTEAGHVVEAVANAEEALYQVAQFNHDLAVIDLGL--PGIGGL 60 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119 +L R +R P++ ++ + Q ++ +G DD V KP E+ AR+ A + R Sbjct: 61 DLIRQLRTLGKAFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + GP+ + + + + + L E RILEYLM + + V K ++ +Y Sbjct: 121 GFIQSTITAGPLLLDLNRKHAALAEQPLALTAYEYRILEYLMLHHQQVVPKERLMEQLY- 179 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 D+ + NV+E + +LR+KL + F P+++ R +GY + Sbjct: 180 PDDDERDPNVIEVLVGRLRRKLDGSVAFKPIETVRGMGYLFNE 222 >gi|225377469|ref|ZP_03754690.1| hypothetical protein ROSEINA2194_03117 [Roseburia inulinivorans DSM 16841] gi|225210686|gb|EEG93040.1| hypothetical protein ROSEINA2194_03117 [Roseburia inulinivorans DSM 16841] Length = 236 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 42/220 (19%), Positives = 94/220 (42%), Gaps = 6/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + + +G ++ + + D+ + Sbjct: 17 ILIVEDDKELSQLFQKVLEKNGYQVKSASDGAQALEVLDKEYIDLIISDIM--MPVMDGY 74 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-ARVAAIYRRL 119 EL +R A Q+P++ I+ S F SG DD + KP++ E++ A + R Sbjct: 75 ELVSELRSAGYQIPVLMITAKGSFDDMRQGFLSGSDDYMVKPVNVNEMVLRVGALLRRAQ 134 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++ ++ G D E LP++E +L L A+ G+ K Q+ ++G Sbjct: 135 ILNEHKIVIGSTEFDYDAMTVTTDKESLVLPKKEFLLLYKLAASPGRIFTKQQLMDEVWG 194 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 ++ + + +E HI ++R++ ++ F+ + + R +GY Sbjct: 195 -YETEADPHTIEVHIGRIRERFKDNPDFE-IVTMRGIGYK 232 >gi|194291903|ref|YP_002007810.1| response regulator, ompr family [Cupriavidus taiwanensis LMG 19424] gi|193225807|emb|CAQ71753.1| putative response regulator, OmpR family [Cupriavidus taiwanensis LMG 19424] Length = 224 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 58/221 (26%), Positives = 98/221 (44%), Gaps = 9/221 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D A + A D G +++ L + D ++ L L Sbjct: 3 ILLVEDEATLAAQVRASLADAGYAVDTAADGLDAWHLGAEEPYDAVILDLGL--PRLDGL 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119 + R RA P++ ++ S ++ D+G DD ++KP E+LAR+ A I R Sbjct: 61 SVLRRWRAAQVNAPVLILTARDSWTEKVEGIDAGADDYLSKPFRMEELLARIRALIRRAH 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + GP+R+ V G L E R+L+YLM + G V+KT + IY Sbjct: 121 GMPAPELQCGPVRMNPRAGTVSVDGAPVVLTAHEFRVLDYLMHHPGAIVSKTALTEHIY- 179 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D + N +E + +LR+KL G D +++ R GY + Sbjct: 180 AQDFDRDSNTIEVFVGRLRRKL----GVDIIETVRGQGYRL 216 >gi|182412142|ref|YP_001817208.1| two component transcriptional regulator [Opitutus terrae PB90-1] gi|177839356|gb|ACB73608.1| two component transcriptional regulator, winged helix family [Opitutus terrae PB90-1] Length = 241 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 47/220 (21%), Positives = 91/220 (41%), Gaps = 5/220 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++IDD + G ++ + D+ ++ L L Sbjct: 19 LIIDDDERLTALLTEYLRRFGFTVRAAAHPRDGLRALKADPPDLVILDVML--PDTDGLA 76 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLKV 121 + R +RA S++P+I ++ + + + G DD + KP RE++AR+ A+ R + Sbjct: 77 VCREVRADSRIPIIMLTARGDVTDRIVGLEMGADDYLPKPFEPRELVARIQAVLRRGTRD 136 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 G + V R + L E +L YL NRG+ +++ +I G+ Sbjct: 137 DAEALRLGALEVNWTTRSVRLAQRELELTTAEFELLGYLARNRGRVMSRDRILDGTRGI- 195 Query: 182 DEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 D + ++ +S+LR+KL + + + R +GYS Sbjct: 196 DWDAYDRSIDILVSRLRQKLGDDPKRPTFIRTVRGVGYSF 235 >gi|42782234|ref|NP_979481.1| DNA-binding response regulator VicR [Bacillus cereus ATCC 10987] gi|42738159|gb|AAS42089.1| DNA-binding response regulator VicR [Bacillus cereus ATCC 10987] Length = 226 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 46/223 (20%), Positives = 90/223 (40%), Gaps = 6/223 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++I+D ++++ F DG + + L ++ +VS I ++ Sbjct: 5 LIIEDEKIIRETVAHYFSHDGYDVITAEDGQIGLELFAAHDHEVSLIILDIMLPVMDGWS 64 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRRL 119 + R IR S VP+I ++ TL F+ G DD V KP R+ + Sbjct: 65 ICRRIRKSSNVPIILLTARSDEDDTLLGFELGADDYVTKPFKPAILLARAKRLFKDTNQN 124 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + IR+ R + G+ E IL+ LM ++ + + + Q+ + I+G Sbjct: 125 LQFQDCIHLCGIRLDKSARSVSIDGQKIDFTHTEYEILQSLMEHKEQVLTREQLITNIWG 184 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +D ++ + +H+ +R KL K + + GY + Sbjct: 185 -YDYDGDDKTLTAHMRNVRLKLGEK--AKHITTVVRTGYKFEV 224 >gi|82699504|ref|YP_414078.1| response regulator receiver [Brucella melitensis biovar Abortus 2308] gi|189023833|ref|YP_001934601.1| transcriptional regulator [Brucella abortus S19] gi|237815071|ref|ZP_04594069.1| Transcriptional activator protein copR [Brucella abortus str. 2308 A] gi|260545665|ref|ZP_05821406.1| transcriptional regulatory protein [Brucella abortus NCTC 8038] gi|82615605|emb|CAJ10592.1| Response regulator receiver:Transcriptional regulatory protein, C terminal [Brucella melitensis biovar Abortus 2308] gi|189019405|gb|ACD72127.1| Transcriptional regulatory protein [Brucella abortus S19] gi|237789908|gb|EEP64118.1| Transcriptional activator protein copR [Brucella abortus str. 2308 A] gi|260097072|gb|EEW80947.1| transcriptional regulatory protein [Brucella abortus NCTC 8038] Length = 235 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 47/222 (21%), Positives = 85/222 (38%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D F + G S + E L + DV ++ L L Sbjct: 3 ILVIEDDREAARYLEKAFAEAGHSADIAGDGETGYALAENGNYDVLVVDRML--PKRDGL 60 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118 + +RA P++ +S + + +G DD + KP E+ V Sbjct: 61 SVVAGLRAKGMETPVLILSALGEVDDRVTGLRAGGDDYLTKPYAFSELLARVEVLQRRSS 120 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + G + + Q L RE R+LEYLM + G+ V +T + ++ Sbjct: 121 PREVDTIYRVGDLELDRLAHTARRQSVDITLQPREFRLLEYLMRHAGQVVTRTMLLENVW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + NV++ HIS+LR K+ + + R GY + Sbjct: 181 D-YHFDPQTNVIDVHISRLRSKIEKGFDEPLLHTVRGAGYML 221 >gi|116748153|ref|YP_844840.1| two component transcriptional regulator [Syntrophobacter fumaroxidans MPOB] gi|116697217|gb|ABK16405.1| two component transcriptional regulator, winged helix family [Syntrophobacter fumaroxidans MPOB] Length = 227 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 43/224 (19%), Positives = 90/224 (40%), Gaps = 11/224 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + G ++ + R + ++ + G E Sbjct: 7 LIVEDDDDILHLLAYNVRAAGFAVFTAQEGYEALRIAKERRPGLIVLDLMI--PGADGFE 64 Query: 63 LPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 + R ++ S +P+I ++ + + G DD V KP RE++ R+ A+ RR Sbjct: 65 VCRELKRGSDTRGIPVIMLTARGEEVDRIVGLELGADDYVVKPFSPRELILRIRAVLRRS 124 Query: 120 KVSNNRAETGP---IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + +R+ D + GE E ++L L+ +RGK ++ + Sbjct: 125 PPDGAQGSVWQLEGLRIDFDAHKVLIDGEDVLFTATEFKLLVELIRSRGKVKSRDYLLDK 184 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + V++H+ +LR+KL D V++ R +GY Sbjct: 185 VWG-YHFEGYARTVDTHVRRLRQKLGPY--ADRVETVRGIGYRF 225 >gi|311108903|ref|YP_003981756.1| transcriptional activator protein IrlR 5 [Achromobacter xylosoxidans A8] gi|310763592|gb|ADP19041.1| transcriptional activator protein IrlR 5 [Achromobacter xylosoxidans A8] Length = 224 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 39/221 (17%), Positives = 90/221 (40%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D + D + ++ DV ++ L G Sbjct: 3 ILLIEDERKLADYVRKGLTEHNYVVDVARDGIDGRHAAIEGDYDVVVLDVML--PGVDGF 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120 + +R H Q P++ ++ ++ + + G DD + KP E+LAR+ A+ R Sbjct: 61 GVLADLRKHKQTPVLMLTARDKVEDRVRGLEGGADDYLVKPFAFSELLARIQALLRRGRG 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + + + R + G L +E +L ++ G+ +++T + ++ + Sbjct: 121 QESTLLKLADLEMDLARRKAQRGGMRLDLTAKEFTLLTLMLRRHGQVLSRTVLAEQVWDM 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + NV+E + +LR K+ + + + R +GY ++ Sbjct: 181 -NFDSDTNVIEVAVRRLRAKIDDPFETKLLHTVRGMGYVLE 220 >gi|164688358|ref|ZP_02212386.1| hypothetical protein CLOBAR_02003 [Clostridium bartlettii DSM 16795] gi|164602771|gb|EDQ96236.1| hypothetical protein CLOBAR_02003 [Clostridium bartlettii DSM 16795] Length = 222 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 37/221 (16%), Positives = 89/221 (40%), Gaps = 9/221 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G ++ N + ++ ++ + Sbjct: 5 ILVVEDDYKSQQLLQQFLTSNGYKVDCANDGLEGIQMYKDRNYNLILLDI--VMPNLDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR--EILARVAAIYRRL 119 + ++IR S VP+I ++ S + FD DD + KP + + Sbjct: 63 SMCKMIRKESDVPIIFVTALSSESDQIKGFDLLCDDYIVKPFSYNLLIKRIEAVLRRSKE 122 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + I++ E+ G++ L +E IL+ L+ N + V + ++ +I+G Sbjct: 123 DKAGVYLTFEKIKLNLKTYSAEIDGKIIDLTLKEFNILKSLIENYPQVVTREKLLDSIWG 182 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D + +V++HI +RKK+ + + + +GY++ Sbjct: 183 -YDYFGDTRIVDAHIKNIRKKIILP----YIKTVKGIGYTL 218 >gi|119899236|ref|YP_934449.1| two component response regulator [Azoarcus sp. BH72] gi|119671649|emb|CAL95562.1| two component response regulator [Azoarcus sp. BH72] Length = 226 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 42/222 (18%), Positives = 92/222 (41%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D D + G ++ L D+ ++ L G V Sbjct: 3 ILIVEDEPKTGDYLRQGLAEAGFVVDLARDGLDGLHLALGGDYDLVVLDVMLPSLDGWGV 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119 L+ R A ++P++ ++ ++ + + G DD + KP E+LARV + R Sbjct: 63 LQTVRR--AGHEMPVLFLTARDQVEDRVRGLELGADDYLVKPFAFSELLARVRTLLRRGK 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + R G+ L +E +LE L+ +G+ + ++ I S ++ Sbjct: 121 AKEAEVLRAADLELDLLRRRVVRGGQRIDLTAKEFALLELLLRRQGEVLPRSLIASQVWD 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + + NV+E + +LR K+ + + + R +GY ++ Sbjct: 181 M-NFDSDTNVIEVAVRRLRAKVDDSFEPKLIRTVRGMGYVLE 221 >gi|71908789|ref|YP_286376.1| DNA-binding response regulator CreB [Dechloromonas aromatica RCB] gi|71848410|gb|AAZ47906.1| two component transcriptional regulator, winged helix family [Dechloromonas aromatica RCB] Length = 226 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 57/225 (25%), Positives = 98/225 (43%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + DG + E L ++ D+ ++ L Sbjct: 3 ILIVDDEPAISETLAYALRSDGFTTESCTLGAQALTLLAAGGHDLVVLDVGL--PDMSGF 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R +R +S VP++ ++ + + G DD V KP RE+++R+ AI RRL Sbjct: 61 DVCRALRRYSDVPVLFLTARSDEVDRIVGLELGGDDYVAKPFSPREVVSRIRAILRRLNP 120 Query: 122 SN-----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 V DG G L R E +L L+ G+ +++TQI + Sbjct: 121 EPRLAAAPPPTPSRFAVDRDGLRIAYHGHWLNLTRYEYLLLALLLERPGRILSRTQIMES 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 ++ E++E V++HI LR KLR + D + + R LGYSI Sbjct: 181 VWQDGGESLE-RTVDTHIKTLRGKLRGLRPDEDVIVTHRGLGYSI 224 >gi|116049749|ref|YP_791444.1| putative two-component response regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|296389810|ref|ZP_06879285.1| putative two-component response regulator [Pseudomonas aeruginosa PAb1] gi|313110495|ref|ZP_07796380.1| putative two-component response regulator [Pseudomonas aeruginosa 39016] gi|115584970|gb|ABJ10985.1| putative two-component response regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|310882882|gb|EFQ41476.1| putative two-component response regulator [Pseudomonas aeruginosa 39016] Length = 235 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 44/223 (19%), Positives = 87/223 (39%), Gaps = 7/223 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L++D + + G + + + + V ++ L G+ L+ Sbjct: 10 LLVEDDQKLARLIASFLSQHGFEVRQVHRGDAAFAAFLDFKPQVVVLDLML--PGQNGLQ 67 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR---EILARVAAIYRRL 119 + R IR + +P++ ++ + +SG DD V KPI L + + L Sbjct: 68 VCREIRRVANLPILILTAQEDDLDHILGLESGADDYVIKPIEPPVLLARLRALMRRHAPL 127 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S G + + R+ E++G L E +L L G+ +++ +I + I G Sbjct: 128 PASPESLTFGKLNIDRRRREAELEGRGIELTTMEFELLWLLANQAGEILSRDEILNQIRG 187 Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 + V+ ISKLR KL++ + + GY + Sbjct: 188 IG-FDGLNRSVDVCISKLRNKLKDNPREPVRIKTVWGKGYLFN 229 >gi|219666111|ref|YP_002456546.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219536371|gb|ACL18110.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 231 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 90/228 (39%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ L +G +++ + ++ V ++ G+ Sbjct: 7 ILVVDDDPEIREIIHILLQREGFAVQV---AADADTALATLTPGVDLAILDIMMPGKSGF 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL IR + +P++ ++ + F G DD + KP E+++RV A+ RR + Sbjct: 64 ELCSEIRKTTTIPILFLTAKNQDADKAEGFSCGGDDYLVKPFSSIELISRVKALLRRYLI 123 Query: 122 SNNRAETGPI-------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + D GE L E ++ L+ NR K + +I+ Sbjct: 124 YQKQEPASKKEVRLGDLYIDLDTGTVARSGEKIALTSMEYQVFRLLLLNRRKVFSAKEIY 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221 I+ + N + HI LR+KL +G + + GY I+ Sbjct: 184 EHIWQEPFLPLSNNTIMVHIKNLRRKLEKDVGRPQYIRTVWGKGYYIE 231 >gi|309792219|ref|ZP_07686691.1| two component transcriptional regulator [Oscillochloris trichoides DG6] gi|308225760|gb|EFO79516.1| two component transcriptional regulator [Oscillochloris trichoides DG6] Length = 226 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 54/226 (23%), Positives = 89/226 (39%), Gaps = 9/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD + + G + + D+ ++ + Sbjct: 3 ILVADDDIPSVKLTSFVLEEAGYRVLKVYDAQSVLQAVDQHNPDLILLDVMMPKS--NGF 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R IR +S VP+I +S LQ + G DD + KP E+LARV A+ RR Sbjct: 61 DICRQIRRNSDVPIIFLSGRSQLQDRVMGLQIGGDDYLVKPYEPSELLARVEAVLRRRNS 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEV-----FPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + E + L E R+L YLM N G+ + +QI S Sbjct: 121 DLLSTSSRLSHGDLTLDPVEHKAIFSDGRTIELTPLEFRLLYYLMKNAGRILNVSQILSK 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 ++G +D E N+V +I +LR K+ + V + R LGY + Sbjct: 181 VWG-YDYEGESNLVAVYIRRLRTKIERDPEHPTYVITVRNLGYKFE 225 >gi|307332348|ref|ZP_07611420.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] gi|306881995|gb|EFN13109.1| two component transcriptional regulator, winged helix family [Streptomyces violaceusniger Tu 4113] Length = 239 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 42/220 (19%), Positives = 88/220 (40%), Gaps = 5/220 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++ DD A ++ +G S+ + DV ++ +E Sbjct: 10 LVTDDDAAIRRSLERGLRLNGFSVTLADGGHAALAAVRDGAPDVVVLDI--SMPDLSGIE 67 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R +R P++ +S + + +G DD + KP +E++ R+ A+ RR Sbjct: 68 VCRALRGDGNDVPVLMLSALDEVSDRVAGLQAGGDDYLVKPFALQELVLRLHALLRRRPP 127 Query: 122 SNNRAETGPIRVF-SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + + + G L RRE +L+ N G + + Q+ ++G Sbjct: 128 AATDRVRAGALEMAPEAQGAWLDGTPLRLTRREFELLDTFARNAGIVLTRDQLLDRVWG- 186 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D V + V++ +S LR+KL + + R +G+ + Sbjct: 187 YDFEVRTDAVDTFVSYLRRKLEAGGRPRMLHTVRGVGFVL 226 >gi|300856180|ref|YP_003781164.1| putative two-component response regulator [Clostridium ljungdahlii DSM 13528] gi|300436295|gb|ADK16062.1| predicted two-component response regulator [Clostridium ljungdahlii DSM 13528] Length = 242 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 55/230 (23%), Positives = 92/230 (40%), Gaps = 14/230 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +LIDD + D + +G +++ + + S R D+ ++ L Sbjct: 11 ILLIDDEEDITDLIEDILLKEGFKNIKKAHCGLDGVKICQSERTDIVVLDIML--PDIDG 68 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +E+ + IR S P++ +S S + G DD + KP REI R+ A RR + Sbjct: 69 IEVCKRIRQFSYCPILFLSAKNSDVDKIVGLSMGGDDYITKPFSPREIAFRIKAQLRRQQ 128 Query: 121 VS---------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 N G I + G L +E ++L YL N K V K Sbjct: 129 YDGIKEVKSSENENIIIGSITIDKLHSQVYKDGSEVKLTAKEYKLLLYLAENSNKIVNKE 188 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++ ++G D +N + HI LR+KL N + + + LGY + Sbjct: 189 RLCEVVWG-DDYFGYDNTISVHIRHLREKLEKNPSKPEIIVTVIGLGYKL 237 >gi|299538439|ref|ZP_07051722.1| two component transcriptional regulator, winged helix family protein [Lysinibacillus fusiformis ZC1] gi|298726026|gb|EFI66618.1| two component transcriptional regulator, winged helix family protein [Lysinibacillus fusiformis ZC1] Length = 239 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 35/228 (15%), Positives = 83/228 (36%), Gaps = 13/228 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + + + + ++ D ++ L +E Sbjct: 9 LIVEDENDIANIIRDYLSVNQFDSHIVRTGHEAIHYLQESKPDFIILDLSL--PDCDGIE 66 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI---------HHREILARVA 113 + R IR +S V ++ +S S + G DD + KP + Sbjct: 67 ICRKIRENSNVAILILSARGSDTDKVLGLGFGADDYMTKPFSLSELVARINAHLRRQDRW 126 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + ++ + + + + PL +E +L +L NR + +K Q+ Sbjct: 127 LQHSGGQMGVDVIHIDNMVINKQEYIFLRDSKPIPLSAKEFELLFFLAKNRNQVFSKGQL 186 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 A++G ++ +EN + +I +LR+K+ + + + +GY Sbjct: 187 LDAVWG-YETYGDENTITVYIRRLREKIEVSPSHPVYLQTVWGVGYKF 233 >gi|296445086|ref|ZP_06887047.1| two component transcriptional regulator, winged helix family [Methylosinus trichosporium OB3b] gi|296257507|gb|EFH04573.1| two component transcriptional regulator, winged helix family [Methylosinus trichosporium OB3b] Length = 232 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 46/229 (20%), Positives = 86/229 (37%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 L+DD + +G ++ + + D++ + + Sbjct: 4 IALVDDDRNILTSVSIALEGEGYRVQTYTDGAAALDGLRANPPDLAIFDI--KMPRMDGM 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL R +R S +P+I ++ L G DD ++KP R ++ RV AI RR Sbjct: 62 ELLRRLRQKSDLPVIFLTSKDEEIDELFGLKMGADDFIHKPFSQRLLVERVKAILRRANP 121 Query: 122 SNNRAETGPI---------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 A+ + + +G+ L E IL+ L G ++ Sbjct: 122 KEAAAQKESEAKVLERGALVMDPERHTCTWRGDPVVLTVTEFLILQALAQRPGVVKSRNA 181 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + A Y V++ ++SHI +LRKK + F+ +++ +GY Sbjct: 182 LMDAAYD-DQVYVDDRTIDSHIKRLRKKFKVADSEFEMIETLYGVGYRF 229 >gi|282898997|ref|ZP_06306979.1| Two component Transcriptional regulator, Winged helix family [Cylindrospermopsis raciborskii CS-505] gi|281196137|gb|EFA71052.1| Two component Transcriptional regulator, Winged helix family [Cylindrospermopsis raciborskii CS-505] Length = 228 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 37/219 (16%), Positives = 82/219 (37%), Gaps = 4/219 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++I+ + + G + + ++ L GE L Sbjct: 10 LVIEPDETLASQLGFDLQEAGYEAIIATDANSGLHKCRDLQPALIVVDRML--PGESGLS 67 Query: 63 LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + +RA P++ + ++ + ++G DD + KP E + + Sbjct: 68 FCKSLRATGNTKPVLILMARDAMDDRVACLEAGADDYILKPYRSEEFSKLIRLYLKPDVD 127 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 S+ + G + + R + L +E +L++ M + + + + QI ++G + Sbjct: 128 SSEQLRFGDLVLDIGTRRAIYNNKAIDLTMKEFELLKFFMEHPREVLTREQILENVWG-Y 186 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D E NV+E +I LR K+ + + R +GY + Sbjct: 187 DFVGESNVIEVYIRYLRLKIEENGQKRLIQTVRGVGYVL 225 >gi|290955694|ref|YP_003486876.1| two component system response regulator [Streptomyces scabiei 87.22] gi|260645220|emb|CBG68306.1| putative two component system response regulator [Streptomyces scabiei 87.22] Length = 229 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 45/223 (20%), Positives = 89/223 (39%), Gaps = 8/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D + +G +S E ++ R D+ ++ L G Sbjct: 6 LLVVDDDPPIADLVATVARYEGWEAVTAHSGEEALRQAAAFRPDIVVLDLML--PGVDGF 63 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + +R + P++ ++ + + G DD + KP E++AR+ + RR Sbjct: 64 GVLDRLRQSGTMVPVVFLTARDGVADRVAGLTRGGDDYLVKPFAVEELMARLRTVLRRSA 123 Query: 121 VSNNRA---ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + + D R+ ++ L E +L YLM + K QI + Sbjct: 124 GPAFQRSVLHVADLSMDEDTREVRRGDKLLTLTPTEYEVLRYLMRKSPTVLTKAQILDHV 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + NVVE +S+LR+KL + + + R GY + Sbjct: 184 W-EYGFGGRSNVVELVVSRLRRKLDDTGEP-LIHTVRGFGYVL 224 >gi|228912374|ref|ZP_04076064.1| Two-component response regulator vanRB [Bacillus thuringiensis IBL 200] gi|228847229|gb|EEM92193.1| Two-component response regulator vanRB [Bacillus thuringiensis IBL 200] Length = 214 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 45/220 (20%), Positives = 92/220 (41%), Gaps = 9/220 (4%) Query: 5 IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64 ++D +++ + + + D+ ++ E+ Sbjct: 2 VEDDQEIQELIKQFLMTQQYKVIVASDGLEGMKQFNKQSFDLILLDVM--MPNLNGFEVA 59 Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRLKVS 122 ++IR+ S +P+I ++ Q + FD G+DD + KP ++ RV A + + Sbjct: 60 KMIRSQSNIPIIMLTALEEEQDQMKGFDLGIDDYITKPFSFHVLMRRVEAVLRRSNNQST 119 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 +N + V SD V PL +E IL+ L+ N K + + I I+G ++ Sbjct: 120 DNHFVFRELHVDSDAYKVYVNKVEVPLTTKEFEILQLLLQNEKKVLTRENIVEKIWG-YE 178 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 A + ++++H+ +RKKL + + + +GY ID Sbjct: 179 YAGDTRMIDTHMKNIRKKLDIP----YIKTVKGIGYKIDE 214 >gi|166033276|ref|ZP_02236105.1| hypothetical protein DORFOR_03002 [Dorea formicigenerans ATCC 27755] gi|226324215|ref|ZP_03799733.1| hypothetical protein COPCOM_01994 [Coprococcus comes ATCC 27758] gi|238925827|ref|YP_002939345.1| hypothetical protein EUBREC_3485 [Eubacterium rectale ATCC 33656] gi|257414028|ref|ZP_04745025.2| DNA-binding response regulator VicR [Roseburia intestinalis L1-82] gi|323341562|ref|ZP_08081799.1| DNA-binding response regulator [Lactobacillus ruminis ATCC 25644] gi|166027633|gb|EDR46390.1| hypothetical protein DORFOR_03002 [Dorea formicigenerans ATCC 27755] gi|225207764|gb|EEG90118.1| hypothetical protein COPCOM_01994 [Coprococcus comes ATCC 27758] gi|238877504|gb|ACR77211.1| hypothetical protein EUBREC_3485 [Eubacterium rectale ATCC 33656] gi|257201430|gb|EEU99714.1| DNA-binding response regulator VicR [Roseburia intestinalis L1-82] gi|291540566|emb|CBL13677.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Roseburia intestinalis XB6B4] gi|323091013|gb|EFZ33648.1| DNA-binding response regulator [Lactobacillus ruminis ATCC 25644] Length = 236 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 42/220 (19%), Positives = 94/220 (42%), Gaps = 6/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + + +G ++ + + D+ + Sbjct: 17 ILIVEDDKELSQLFQKVLEKNGYQVKSASDGAQALEVLDKEYIDLIISDIM--MPVMDGY 74 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-ARVAAIYRRL 119 EL +R A Q+P++ I+ S F SG DD + KP++ E++ A + R Sbjct: 75 ELVSELRSAGYQIPVLMITAKGSFDDMRQGFLSGSDDYMVKPVNVNEMVLRVGALLRRAQ 134 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++ ++ G D E LP++E +L L A+ G+ K Q+ ++G Sbjct: 135 ILNEHKIVIGSTEFDYDAMTVTTDKESLVLPKKEFLLLYKLAASPGRTFTKQQLMDEVWG 194 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 ++ + + +E HI ++R++ ++ F+ + + R +GY Sbjct: 195 -YETEADPHTIEVHIGRIRERFKDNPDFE-IVTMRGIGYK 232 >gi|110801527|ref|YP_699386.1| vncR, response regulator [Clostridium perfringens SM101] gi|110682028|gb|ABG85398.1| vncR, response regulator [Clostridium perfringens SM101] Length = 217 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 44/220 (20%), Positives = 103/220 (46%), Gaps = 7/220 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++++G + G + ++ D++ I + L Sbjct: 3 ILIVEDDKIIREGISEYLSEFGYIIIEAKDGREALSKFNN---DINLIILDIQIPYINGL 59 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + IR S++P++ ++ + + +D F + D V KP + AR+ ++ ++ Sbjct: 60 DVLKEIRKKSKLPILILTAFSDEEYKIDAFTNFADGYVEKPFSLPVLKARIDSLIKKNFG 119 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + E I V + ++ GE + +E IL+YL+ N G+ + + QI ++ Sbjct: 120 QIEKFEYKNIDVNFNSYTVKINGENIYIYAKELEILKYLVDNEGQVLTRMQIIDNVWKET 179 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +E + V++ +I +LRKKL+ D + + R +GY ++ Sbjct: 180 EEIPYDRVIDVYIKELRKKLKL----DCITTIRNVGYKLE 215 >gi|90578546|ref|ZP_01234356.1| hypothetical DNA-binding response regulator [Vibrio angustum S14] gi|90439379|gb|EAS64560.1| hypothetical DNA-binding response regulator [Vibrio angustum S14] Length = 225 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 42/222 (18%), Positives = 93/222 (41%), Gaps = 7/222 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++I+D ++ + G ++ + +S + ++ L L+ Sbjct: 4 LVIEDDVTTREFIAQGLREHGFVVDEAEDGHQGLMMATSCEYQLIILDRMLPI--LDGLK 61 Query: 63 LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + +RA ++ P++ +S S++ + +G DD + KP E++AR + +R + Sbjct: 62 VLAALRATENETPILILSAMDSVEDRVAGLTAGSDDYLTKPFALAELIARANILVKRHQS 121 Query: 122 SNNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 S N + L ++E +L+YLM + V++ +F +++ Sbjct: 122 SVNISSEYSYDDLRLDIKSHRVWRGSRELNLQQKEFLLLQYLMEHAESVVSRMSLFESVW 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + NV++ HI+ LRKKL + + R GY + Sbjct: 182 S-YHFDPKTNVIDVHIANLRKKLEEGGEPSLIHTVRGAGYVL 222 >gi|84578942|dbj|BAE72909.1| two-component response regulator mutated protein M3-f [Streptococcus pyogenes] Length = 228 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 90/224 (40%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + +G + + D+ ++ L Sbjct: 5 ILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLML--PEMDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R ++ ++ ++ S+ + D G DD + KP E+LAR+ AI+RR + Sbjct: 63 EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122 Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + R + L +RE +L LM N + + + ++ S Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +DEAVE NVV+ +I LR K+ + + R +GY I Sbjct: 183 VW-KYDEAVETNVVDVYIRYLRGKIDIPGKESYIPTVRGMGYVI 225 >gi|298492568|ref|YP_003722745.1| winged helix family two component transcriptional regulator ['Nostoc azollae' 0708] gi|298234486|gb|ADI65622.1| two component transcriptional regulator, winged helix family ['Nostoc azollae' 0708] Length = 509 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 46/222 (20%), Positives = 90/222 (40%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L+DD ++ + L ++ E L + D+ ++ L + Sbjct: 3 ILLVDDDEIIVEVLTKLLVQQNYVVDVARDGEAAWELVEGFQYDLILLDVML--PKLDGI 60 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 R +R S V ++ ++ + L D G DD V KP + +E+ ARV A+ RR Sbjct: 61 SFCRRLREQKSPVLVMLLTACDTTTDKLQGLDRGADDYVVKPFNVQELAARVPALTRRGS 120 Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S + + + Q + L R+E ++E + N+ + + I ++ Sbjct: 121 SSPYPTLVCGHLHLDPNLHEVNYQEHLLQLSRKEYLLVELFLRNQKRIYSCRDIIDELWA 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E E V SHI+ +R+ L+ + +++ GY I+ Sbjct: 181 FDAEPPNEWTVRSHITNIRRNLKAVGADNFLETVYGQGYRIN 222 Score = 48.5 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 19/103 (18%), Positives = 41/103 (39%), Gaps = 4/103 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 + +DD + L GV L + + + + ++ ++ G + L+ Sbjct: 378 LAVDDDPQILLTVQTLLEPLGVQLTYLTNPDRFWETVPYNQPEFLILDIYMP-SGTEGLD 436 Query: 63 LPRIIRA---HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102 L R + + +P++ +S ++T F G DD + KP Sbjct: 437 LCRAVGQNDDWNWLPILFLSSCTDVETLQKAFVIGADDYLTKP 479 >gi|206968423|ref|ZP_03229379.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|218232940|ref|YP_002365368.1| DNA-binding response regulator [Bacillus cereus B4264] gi|206737343|gb|EDZ54490.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|218160897|gb|ACK60889.1| DNA-binding response regulator [Bacillus cereus B4264] Length = 223 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 52/222 (23%), Positives = 99/222 (44%), Gaps = 7/222 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A + + + + D+ ++ + E +L D ++ G Sbjct: 3 LLVVEDNASLLESIVQILRDE-FEVDTAINGEDGLFLALQNIYDAILLDVM--MPGMDGF 59 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118 E+ + IR + P++ ++ SL+ + D G DD + KP E+ AR+ A Sbjct: 60 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + I +F +D +V G+ L ++ +LEYL+ N GK + + QIF ++ Sbjct: 120 SLTTQQTIRYKGIELFGKDKDVQVDGQSIKLTLKQYELLEYLIQNSGKILMREQIFDRVW 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G FD +VE ++ LRKKL + + R +GY + Sbjct: 180 G-FDSDTTVAIVEVYVHHLRKKLEPFGYQKDIQTVRGIGYIL 220 >gi|153810431|ref|ZP_01963099.1| hypothetical protein RUMOBE_00812 [Ruminococcus obeum ATCC 29174] gi|149833610|gb|EDM88691.1| hypothetical protein RUMOBE_00812 [Ruminococcus obeum ATCC 29174] Length = 221 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 49/222 (22%), Positives = 92/222 (41%), Gaps = 5/222 (2%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEK 59 M L++D +++ + G+ +GF + ++ L G Sbjct: 1 MIYLVEDDESIRELVVYTLKSQGMDAKGFERPSLFWKELEKEVPALILLDIMLPEEDGIS 60 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +L R ++P+I ++ + + DSG DD + KP E+++R+ A RR Sbjct: 61 ILRKLRTRPDTRKIPVIMLTAKGTEYDVVMGLDSGADDYIPKPFRMMELISRIKARLRRA 120 Query: 120 KVSNNRAETGPIRVFSD-GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + V E L +E +L L+ N G +++TQ+ + I+ Sbjct: 121 EDKGAEEYHLENLYLCPGRHIVTVDQEPVNLTLKEYEMLVLLLKNSGMVLSRTQLLNQIW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G ++ E V+ HI LR+KL + D +++ R +GY I Sbjct: 181 G-YEFDGESRTVDVHIRTLRQKLGSAG--DLIETVRGVGYKI 219 >gi|219848942|ref|YP_002463375.1| winged helix family two component transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219543201|gb|ACL24939.1| two component transcriptional regulator, winged helix family [Chloroflexus aggregans DSM 9485] Length = 247 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 44/224 (19%), Positives = 88/224 (39%), Gaps = 9/224 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + +G+ + + D+ ++ E Sbjct: 10 LVVDDEPRMIAFMRMNLELEGMRVTTATNGREAVEKVREEMPDIVLLDVM--MPVMDGFE 67 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 R IR+ SQVP+I ++ + + + G DD V KP RE+++R+ A+ RR Sbjct: 68 ALRRIRSFSQVPVIILTAKDEEEDRVRGLELGADDYVGKPFSQRELISRIRAVLRRHYTQ 127 Query: 123 NNRAETGPIRVFSDGRDPEVQG-----EVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 +T D + + L E R+L +L+ N G + + S + Sbjct: 128 PPIPQTLVKVDDRLSIDFARREVLVDGKRVNLRPTEYRLLYHLVQNAGYVLTHEMLLSKV 187 Query: 178 YGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220 +G E + + +I+ LR+K+ + + ++R +GY Sbjct: 188 WGPEYRD-ESHYLRLYITYLRQKIEEDPSNPRYILTERGVGYRF 230 >gi|290352169|dbj|BAI78795.1| putative two-component response regulator [Streptococcus pyogenes] Length = 228 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 89/224 (39%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + +G + + D+ ++ L Sbjct: 5 ILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLML--PEMDGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R ++ ++ ++ S+ + D G DD + KP E+LAR+ AI+RR + Sbjct: 63 EVTRRLQTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDI 122 Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + R + L +RE +L LM N + + + ++ S Sbjct: 123 ESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREYDLLNILMTNMNRVMTREELLSN 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + +DEAVE NVV+ +I LR K+ + + R +GY I Sbjct: 183 VC-KYDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVI 225 >gi|257438018|ref|ZP_05613773.1| DNA-binding response regulator VicR [Faecalibacterium prausnitzii A2-165] gi|257199678|gb|EEU97962.1| DNA-binding response regulator VicR [Faecalibacterium prausnitzii A2-165] Length = 236 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 42/220 (19%), Positives = 94/220 (42%), Gaps = 6/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + + +G ++ + + D+ + Sbjct: 17 ILIVEDDKELSQLFQKVLEKNGYQVKSASDGAEALEVLVKEYIDLIISDIM--MPVMDGY 74 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-ARVAAIYRRL 119 EL +R A Q+P++ I+ S F SG DD + KP++ E++ A + R Sbjct: 75 ELVSELRSAGYQIPVLMITAKGSFDDMRQGFLSGSDDYMVKPVNVNEMVLRVGALLRRAQ 134 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++ ++ G D E LP++E +L L A+ G+ K Q+ ++G Sbjct: 135 ILNEHKIVIGSTEFDYDAMTVTTDKESLVLPKKEFLLLYKLAASPGRIFTKQQLMDEVWG 194 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 ++ + + +E HI ++R++ ++ F+ + + R +GY Sbjct: 195 -YETEADPHTIEVHIGRIRERFKDNPDFE-IVTMRGIGYK 232 >gi|228996503|ref|ZP_04156142.1| Two-component response regulator [Bacillus mycoides Rock3-17] gi|228763135|gb|EEM12043.1| Two-component response regulator [Bacillus mycoides Rock3-17] Length = 210 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 37/215 (17%), Positives = 79/215 (36%), Gaps = 8/215 (3%) Query: 11 VKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELPRIIRAH 70 ++ + G + + + + D ++ + + IR Sbjct: 1 MRQLVGMYLDNFGYEWGEAENGKDALHMLDTDHYDFVILDIM--MPQMDGTSVCKEIRKT 58 Query: 71 SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH---REILARVAAIYRRLKVSNNRAE 127 S VP+I ++ ++ G DD + KP + V Y + + + Sbjct: 59 SDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRRYTKQEQQEEELQ 118 Query: 128 TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFDEAVEE 187 G I + R E+ GE L +E +L +L + G+ ++ Q+ ++G +D A Sbjct: 119 FGSIVINEKSRRIEIDGEPISLTVKEFDLLYFLCGHNGQVFSREQLLEKVWG-YDYAGST 177 Query: 188 NVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 V++H+ +R KL + + +GY + Sbjct: 178 RTVDTHVKTMRLKLGESGN--YIQTVWGVGYKFEV 210 >gi|187934136|ref|YP_001885585.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B] gi|187722289|gb|ACD23510.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B] Length = 231 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 39/230 (16%), Positives = 75/230 (32%), Gaps = 13/230 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++IDD + + ++G + + + + + V ++ G + Sbjct: 5 LIIDDEVEIVELIEVYLVNEGYKVFKAYNGSDGINIINEEKIHVVVLDVM--MPGIDGFQ 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARVA 113 + IR +P+I +S + +G DD + KP + E Sbjct: 63 VCMKIRKDYNIPIIMLSAKSQDVDKIQGLSTGADDYMIKPFNPMELIARVKSQIRRYVFL 122 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + E I + G+ L E IL L N G + I Sbjct: 123 NEKSNKSNDIDIIEFKDITINKKNHKVLFLGKELKLTPIEYEILLLLANNLGTVFSAEDI 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSIDW 222 F ++ N V HI +LR+K+ +++ +GY I+ Sbjct: 183 FKEVWKEKYFEGN-NTVMVHIWRLREKIEENPKEPKIIETVWGVGYKIEE 231 >gi|28901520|ref|NP_801175.1| putative two-component response regulator [Vibrio parahaemolyticus RIMD 2210633] gi|260363072|ref|ZP_05775941.1| response regulator GltR [Vibrio parahaemolyticus K5030] gi|260880359|ref|ZP_05892714.1| response regulator GltR [Vibrio parahaemolyticus AN-5034] gi|260894726|ref|ZP_05903222.1| protein GltR [Vibrio parahaemolyticus Peru-466] gi|260900076|ref|ZP_05908471.1| response regulator GltR [Vibrio parahaemolyticus AQ4037] gi|28810067|dbj|BAC63008.1| putative two-component response regulator [Vibrio parahaemolyticus RIMD 2210633] gi|308089446|gb|EFO39141.1| protein GltR [Vibrio parahaemolyticus Peru-466] gi|308091700|gb|EFO41395.1| response regulator GltR [Vibrio parahaemolyticus AN-5034] gi|308110048|gb|EFO47588.1| response regulator GltR [Vibrio parahaemolyticus AQ4037] gi|308112437|gb|EFO49977.1| response regulator GltR [Vibrio parahaemolyticus K5030] Length = 235 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 44/226 (19%), Positives = 89/226 (39%), Gaps = 11/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ G G + + L + D+ ++ G+ Sbjct: 6 ILVVDDNLDLREALSDYLGRAGFEVLCAENGRVMWQLLNDHHPDLIILDIM--MPGDDGF 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L + +R +S +P+I ++ + + G DD + K RE+LAR+ I RR + Sbjct: 64 TLCQKLRKNSDIPIIMLTAVTEEADRVAGLEMGADDYITKSFSPRELLARIKTILRRSQS 123 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERR-------ILEYLMANRGKRVAKTQIF 174 + N T +R D + R ++ +L + + +++ I Sbjct: 124 TANSKLTRKVRFDDWLLDTVTRQLTHVASREVKQLSGADLSLLGLFVNHAQSILSRDDIA 183 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I+G D E ++ IS+LR L +K + + R GY + Sbjct: 184 REIWGR-DADPFERGIDVQISRLRHHLEDK-DRSLILTVRNKGYML 227 >gi|261406973|ref|YP_003243214.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261283436|gb|ACX65407.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] Length = 246 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 43/230 (18%), Positives = 83/230 (36%), Gaps = 14/230 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD + + + +G + S + D++ ++ Sbjct: 13 ILIADDESDITELLRLFLEREGYRVLEAISGREAWNILHREPVDLAVVDIM--MPELDGY 70 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 +L IR + ++P+I +S + G DD ++KP E++AR+ A RR Sbjct: 71 QLIARIRENHRLPVIILSAKNGDVDKVTGLGLGADDFISKPFSPIEVVARIKAQLRRYYE 130 Query: 122 SNNRAETGPIRV----------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + + + E L E ++L LM G+ K Sbjct: 131 LMGAEPAQRSEMLKTVCGSLTLDHEACVLYKRSEAITLGPLEYKLLRLLMEAPGRIFTKR 190 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 QI+ ++ + N V IS+LR KL + + + + LGY + Sbjct: 191 QIYENVWNEPYLE-DSNTVMVQISRLRDKLEDDPREPRLLITIKGLGYKL 239 >gi|164686356|ref|ZP_02210386.1| hypothetical protein CLOBAR_02794 [Clostridium bartlettii DSM 16795] gi|164601958|gb|EDQ95423.1| hypothetical protein CLOBAR_02794 [Clostridium bartlettii DSM 16795] Length = 227 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 40/224 (17%), Positives = 87/224 (38%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++IDD + + +G ++ + ++ ++ L G V Sbjct: 5 ILVIDDEMHIVELLKFNLEVNGYIVDYSLDSFEGYHKAKELKPNLILLDWMLPNISGIDV 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIY 116 L+ R P+I ++ + + + G DD + KP + I + + Sbjct: 65 LKKIREDEDLKDTPVIMLTAKNMERDKVKGLEEGADDYITKPFGIKELLARINSVLRRYN 124 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + IR+ + + + L +E +L+ L+ N+GK +++ + Sbjct: 125 MTTNKVEDVLTVKDIRMDLIKHEVTKKDKKIDLTIKEFDLLKLLLQNKGKVLSRNFLLDK 184 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G ++ E V+ HI LRKK+ N +++ R +GY I Sbjct: 185 VWG-YEYFGETRTVDVHIRYLRKKIENDGE-KYIETIRGIGYKI 226 >gi|126649411|ref|ZP_01721652.1| two-component response regulator [Bacillus sp. B14905] gi|126593736|gb|EAZ87659.1| two-component response regulator [Bacillus sp. B14905] Length = 227 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 50/224 (22%), Positives = 93/224 (41%), Gaps = 9/224 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD +++ + + + S + + D+ ++ E Sbjct: 5 LIVDDEQDMRNLIEMMLNNSDIETFTAASGTEAYDIIVREKIDLVLLDVM--MPHEDGFV 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL--- 119 + + IRA S VP+I ++ + + G DD + KP H E++AR+ A+ RR Sbjct: 63 VCQSIRAMSNVPIIFLTARDANDDKVKGLTLGGDDYIVKPFTHDELVARIYAVLRRSGAN 122 Query: 120 --KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 ++ GPI++ R V G+ PL +E +L M N G + Q+ I Sbjct: 123 IAELQQKYVVFGPIKIDEIARKVSVDGKSIPLTLKEFELLHLFMKNPGNAYTREQLLERI 182 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + D V++HI LR KL + + + +GY D Sbjct: 183 WDI-DYVGGTRTVDTHIKTLRIKLGKEAAA-HIQTVWGVGYRFD 224 >gi|25029050|ref|NP_739104.1| hypothetical protein CE2494 [Corynebacterium efficiens YS-314] gi|23494337|dbj|BAC19304.1| conserved hypothetical protein [Corynebacterium efficiens YS-314] Length = 240 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 92/224 (41%), Gaps = 10/224 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + G ++ + + R D ++ G E Sbjct: 16 LVVDDEPNIVELLTVSLKFQGFNVMTASDGNEGLKIAREFRPDAYILDVM--MPGMDGFE 73 Query: 63 LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L +RA P++ ++ +++ + G DD V KP E++ R+ I RR Sbjct: 74 LLTKLRAEGLDGPVLYLTAKDAVENRIHGLTIGADDYVTKPFSLEEVITRLRVILRRGGS 133 Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + + + + GE+ L E +L YLM N ++K +I Sbjct: 134 VESESNDATLTYADLTLNDETHEVTKAGELVDLSPTEFNLLRYLMLNAEVVLSKAKILDN 193 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +D + NVVES+IS LR+K+ + + + R +GY + Sbjct: 194 VW-HYDFGGDGNVVESYISYLRRKV-DTHEPQLIQTVRGVGYVL 235 >gi|115523445|ref|YP_780356.1| two component transcriptional regulator [Rhodopseudomonas palustris BisA53] gi|115517392|gb|ABJ05376.1| two component transcriptional regulator, winged helix family [Rhodopseudomonas palustris BisA53] Length = 240 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 49/224 (21%), Positives = 88/224 (39%), Gaps = 13/224 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L+DD ++D +G + D+ ++ GE Sbjct: 21 LLLVDDDRRIRDLLSRFLASEGYRVTTAKDASDARAKLQGLHFDLLILDVM--MPGETGF 78 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 +L R IR S VP++ ++ ++ ++ G DD V KP RE+L R+ I +R Sbjct: 79 DLARSIRLDSAVPIVMLTARHEPESRIEGLQIGADDYVAKPFEPRELLLRIGNILKRSMP 138 Query: 122 SNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 GP + + E+ L RER +L L A G+ V + + Sbjct: 139 VATPQLEQVSFGPYVYHLERGELRQGEEIVHLTDRERDMLRILAAAPGETVPRGAL---- 194 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + V E V+ I++LR+K+ + + + R +GY + Sbjct: 195 --TGGDTVNERAVDVQINRLRRKIEQDPANPLFLQAVRGIGYRL 236 >gi|332992601|gb|AEF02656.1| two component transcriptional regulator [Alteromonas sp. SN2] Length = 237 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 53/226 (23%), Positives = 91/226 (40%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEW-LQSSAREDVSAIEAFLIGKGEKV 60 +L+DD A + DG ++E NS + L S D ++ G Sbjct: 8 ILLVDDDAELCALLSEFLQTDGFAVETLNSGDAAVARLLQSDEFDTVVLDIM--MPGMSG 65 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAA 114 L++ R +RA Q P++ ++ + + G DD + KP + RE+ + R Sbjct: 66 LDVLRNVRAKKQTPILMLTGRGDDIDRILGLEMGADDYLAKPCNPRELGARIRAIIRRTQ 125 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + AE I + S R V PL E L LM G+ + K ++ Sbjct: 126 NGNAPTQTVVHAELHGIVLDSGARTALVDNTPLPLTGAEFNALSLLMERVGQTITKQEMT 185 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + EA + ++ H+S++R+KL D + S R +GY + Sbjct: 186 EEVLNRPLEAYD-RAMDVHVSRIRQKLTAVGINDVIKSVRGVGYQM 230 >gi|293399743|ref|ZP_06643889.1| DNA-binding response regulator [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306143|gb|EFE47386.1| DNA-binding response regulator [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 224 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 46/221 (20%), Positives = 96/221 (43%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L +D + ++ S++ + E DV ++ L Sbjct: 3 ILLAEDEKELNRIVCERLREEQYSVDACLNGEEALAFLQVMEYDVVILDIM--MPIVDGL 60 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ + +RA+ QVP++ ++ S+Q + D+G DD + KP E+LAR+ + R+ Sbjct: 61 EVLQTLRANGKQVPVLMLTAKDSIQDRVKGLDAGADDYLVKPFAFDELLARIRVLLRKPS 120 Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + ++ + + L +E +L Y+M N G +++ ++ I+ Sbjct: 121 NRHTGFYQVDDLVLYPNTHKVLRADKEIHLSAKEFSLLRYMMQNTGIVLSREKLEQHIW- 179 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D + E NV++ +I LRKK+ + + R +GY + Sbjct: 180 NYDYSGESNVIDVYIRYLRKKIDEGHSHKLLHTIRGVGYVL 220 >gi|289524120|ref|ZP_06440974.1| DNA-binding response regulator ArlR [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289502776|gb|EFD23940.1| DNA-binding response regulator ArlR [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 228 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 47/222 (21%), Positives = 96/222 (43%), Gaps = 5/222 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++ DD + + + + +++ ++ A D+ ++ L Sbjct: 5 LIADDDTSLLEQLREILASERYTVDTASNGIEAMDKLYDAVFDLVILDVM--MPHIDGLS 62 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120 L IR P++ ++ ++ + + G DD + KP E+LARV A+ R Sbjct: 63 LLEQIRKGGINIPVLMLTAKGDVEDKVKGLNLGADDYLAKPFSIDELLARVRALLRRSEG 122 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + +R+ + R GE L ++E ILE+L+ N+ + V++ + ++G Sbjct: 123 RHSAILDAKGLRLDTVSRKVTKDGEPIDLTQKEFLILEFLLYNKNRVVSRFSLAEHVWGD 182 Query: 181 -FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 FD N ++ HI LR+KL + + + R +GY I+ Sbjct: 183 AFDPFTMSNFIDVHIKNLRRKLGDAGNDKIIQTVRSVGYMIE 224 >gi|302535686|ref|ZP_07288028.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. C] gi|302444581|gb|EFL16397.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. C] Length = 255 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 56/225 (24%), Positives = 97/225 (43%), Gaps = 10/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD A + + +G + R DV ++ L L Sbjct: 30 LVVDDEAPLSELLSMALRYEGCEVRSAGDGAGAVRAAREFRPDVVVLDVML--PDMDGLA 87 Query: 63 LP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R+ R QVP++ ++ S++ + +G DD V KP E++AR+ + RR Sbjct: 88 VLGRLRREIPQVPVLFLTAKDSVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLVRRSGA 147 Query: 122 SNNRA-----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + G +R+ D + G+ L E +L YLM N + ++K QI Sbjct: 148 AQAARGGSVLTVGDLRLDEDSHEVVRGGQEVHLTATEFELLRYLMRNPRRVLSKAQILDR 207 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 ++ +D + NVVE +IS LR+KL G + ++R GY I Sbjct: 208 VWS-YDFGGQANVVELYISYLRRKLEGGTGLPPMIHTRRGAGYLI 251 >gi|239944887|ref|ZP_04696824.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291448351|ref|ZP_06587741.1| two-component response regulator [Streptomyces roseosporus NRRL 15998] gi|291351298|gb|EFE78202.1| two-component response regulator [Streptomyces roseosporus NRRL 15998] Length = 231 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 47/228 (20%), Positives = 93/228 (40%), Gaps = 12/228 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + ++ L ++ DV ++ L +E Sbjct: 5 LVVDDEPQIVRALVINLKARQYEVDAAPDGATALQLAAARHPDVVLLDLGL--PDMDGVE 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +R ++VP++ +S + ++ D+G DD V KP E+LAR+ A RR + Sbjct: 63 VIRGLRGWTRVPILVLSARQTSDEKVEALDAGADDYVTKPFGMDELLARLRAAVRRAEPV 122 Query: 123 NNRAETGP--------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 T V + G L E +LE L+ N G+ V++ Q+ Sbjct: 123 GQEGGTEDIAVVETAGFTVDLAAKKVHRAGRDVRLTPTEWHLLEVLVRNSGRLVSQKQLL 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 ++G E N + ++++LR+KL + ++ +GY + Sbjct: 183 QEVWGPS-YGTETNYLRVYMAQLRRKLEADPSHPRHFVTEPGMGYRFE 229 >gi|255102528|ref|ZP_05331505.1| two-component system, response regulator [Clostridium difficile QCD-63q42] Length = 217 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 42/220 (19%), Positives = 102/220 (46%), Gaps = 7/220 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++++G + G ++ +SA ++ + + L Sbjct: 3 ILIVEDDNMIREGISEYLSEFGYTVIQAKDGREALSKFNSA---INLVILDIQIPFINGL 59 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IR S +P++ ++ + + +D F + VD V KP + R+ ++ ++ Sbjct: 60 EVLKEIRKKSNLPILILTAFSDEEYKIDAFTNLVDGYVEKPFSLPVLKVRIDSLIKKNYG 119 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + E + V + ++ GE + +E +L+ L+ N G+ + + QI ++ Sbjct: 120 HLEKFEYKDLSVNFNSYTAKINGEEIDVNAKELDVLKCLLDNDGQVLTRMQIIDYVWKDS 179 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +E + V++ +I +LRKKL+ D + + R +GY ++ Sbjct: 180 EEIPYDRVIDVYIKELRKKLQL----DCITTIRNVGYKLE 215 >gi|188588940|ref|YP_001919844.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Clostridium botulinum E3 str. Alaska E43] gi|188499221|gb|ACD52357.1| alkaline phosphatase synthesis transcriptional regulatory proteinphoP [Clostridium botulinum E3 str. Alaska E43] Length = 229 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 28/226 (12%), Positives = 86/226 (38%), Gaps = 11/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D ++ + + E D++ ++ L G Sbjct: 4 ILLVEDEESIRGFIKINLKRNDFEVIEAECGEDGLKAAEKFSIDLAVLDVML--PGIDGF 61 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH------REILARVAA 114 ++ +R + ++ +I ++ + + G DD + KP + + + R Sbjct: 62 KVCDELRKRYPKMGIIMLTARTQDMDKIMGLEYGADDYIIKPFNPLELILRIKAILRRTG 121 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 ++K + ++ P + + + +E +++ + N K ++ ++ Sbjct: 122 DESQVKENIDKLIREPFIIDLYSQKLFKDNIEIDVTPKEYLLMKLFLKNPNKAFSRDELL 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYS 219 + I+G +D + +++ +I +LR K+ + + +++ GY Sbjct: 182 NLIWG-YDYFGDPKLIDVNIRRLRSKIEDTPSEPEFIETIWGKGYR 226 >gi|167769697|ref|ZP_02441750.1| hypothetical protein ANACOL_01031 [Anaerotruncus colihominis DSM 17241] gi|167668058|gb|EDS12188.1| hypothetical protein ANACOL_01031 [Anaerotruncus colihominis DSM 17241] Length = 234 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 46/228 (20%), Positives = 92/228 (40%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D +++D + G + + E + ++ G Sbjct: 4 ILVVEDEDVIRDFEVINLKRAGYEVVDVPTGEEAIQVFERNPTHFDVAVLDVMMPGMDGF 63 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR-- 118 E+ R IR +S + +I ++ ++ G DD V KP E++ARV A++RR Sbjct: 64 EVCRRIREKNSSIGIIMLTAKSQEMDKVNGLMIGADDYVTKPFSPSELVARVDALHRRVT 123 Query: 119 ------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + ++GP + R G V L + E +ILEY N + + Sbjct: 124 VAAEKAQAPAPSELKSGPFVLNMKSRTVSKNGRVLELTQVEYQILEYFFNNPNTALGRQD 183 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYS 219 I + ++G + +V+ +I +LR KL + + + + GY Sbjct: 184 ILNKVWGEG-YFGDIKIVDVNIRRLRMKLEDAPSKPEFLLTVWGFGYK 230 >gi|70731816|ref|YP_261558.1| DNA-binding response regulator PhoP [Pseudomonas fluorescens Pf-5] gi|68346115|gb|AAY93721.1| DNA-binding response regulator PhoP [Pseudomonas fluorescens Pf-5] Length = 225 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 58/223 (26%), Positives = 105/223 (47%), Gaps = 5/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D AL++ D G +E + E + D++ I+ L G L Sbjct: 3 LLVVEDEALLRHHLQTRLTDSGHVVESVANAEEALYQTEQFNHDLAVIDLGL--PGMGGL 60 Query: 62 ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119 +L R + P++ ++ + Q ++ +G DD V KP E+ AR+ A+ R Sbjct: 61 DLIRQLRNRGKTFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELDARLNALLRRSS 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + GP+ + + + + + L E RILEYLM + + VAK ++ +Y Sbjct: 121 GFTQSTIIAGPLLLDLNRKQASLDEQPLALTAYEYRILEYLMRHHQQVVAKDRLMEQLY- 179 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 D+ + NV+E + +LR+KL GF P+D+ R LGY + Sbjct: 180 PDDDERDPNVIEVLVGRLRRKLEGPSGFKPIDTVRGLGYLFNE 222 >gi|332306808|ref|YP_004434659.1| two component transcriptional regulator, winged helix family [Glaciecola agarilytica 4H-3-7+YE-5] gi|332174137|gb|AEE23391.1| two component transcriptional regulator, winged helix family [Glaciecola agarilytica 4H-3-7+YE-5] Length = 244 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 54/229 (23%), Positives = 97/229 (42%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFE-EWLQSSAREDVSAIEAFLIGKGEKV 60 +L+DD + +G +E ++ + E L S D ++ G Sbjct: 8 ILLVDDDETLCALLSEFLQAEGFEVETLHTGDAATERLLQSDEFDTVVLDIM--MPGMSG 65 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L++ R +RA QVP++ ++ + + G DD + KP + RE+ AR+ AI RR + Sbjct: 66 LDVLRSVRAKRQVPILMLTGRGDDIDRIVGLEMGADDYLGKPCNPRELSARIKAIIRRTE 125 Query: 121 V---------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + I + + R V PL E L LM G+ ++K Sbjct: 126 NSLGNGLDTKPIVHTQLHGIELDTGTRTALVNNTPLPLTSAEFNALSLLMTRAGQTISKQ 185 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + EA + ++ HIS++R+KL ++ D + S R +GY + Sbjct: 186 DMTQEVLNRPLEAYD-RAMDVHISRIRQKLSSEGINDVIKSIRGVGYQM 233 >gi|330987464|gb|EGH85567.1| DNA-binding response regulator [Pseudomonas syringae pv. lachrymans str. M301315] gi|331010636|gb|EGH90692.1| DNA-binding response regulator [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 249 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 48/225 (21%), Positives = 92/225 (40%), Gaps = 9/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD +++ ++ G + DV ++ L GE L Sbjct: 23 LIVDDDVAIRELLCDYLTRFNINARGVTDGTQMRQALTDETFDVVVLDLML--PGEDGLS 80 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R +R+ S +P++ ++ + + G DD + KP RE++AR+ I RR++ Sbjct: 81 LCRWLRSTSDIPILMLTARCEPTDRIIGLELGADDYMAKPFEPRELVARIQTILRRVRDE 140 Query: 123 NNRAETGPIRVFSD-----GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + T + G V PL E R+L + + +++ Q+ A Sbjct: 141 RSDQRTTIRFDAWRLNSVLRQLTAADGLVVPLSNAEFRLLRVFLERPHRVLSREQLLDAA 200 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 G EA + ++ +S+LR+KL + + + R GY D Sbjct: 201 RGRSIEAFD-RSIDLLVSRLRQKLGDDPKNPQLIKTVRGEGYLFD 244 >gi|315282416|ref|ZP_07870834.1| transcriptional regulatory protein SrrA [Listeria marthii FSL S4-120] gi|313613939|gb|EFR87665.1| transcriptional regulatory protein SrrA [Listeria marthii FSL S4-120] Length = 228 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 44/228 (19%), Positives = 88/228 (38%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D V + F + + + + D++ I+ L + Sbjct: 3 LLMIEDNVSVCEMIEMFFMKEEIDATFVHDGKLGYETFFKDDYDIAIIDLML--PNMDGM 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK- 120 + R IR S VP+I ++ S + + G DD V KP ++AR+ A+ RR Sbjct: 61 TICRKIREVSDVPIIILTAKESESDQVLGLEMGADDYVTKPFSPLTLMARIKAVTRRKNS 120 Query: 121 ------VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + T + L +E +L +LM + + ++ Q+ Sbjct: 121 AAPAENNEDILETTYFKISKRTREIFYQGELLDALTPKEFDLLYFLMQHPRQVFSREQLL 180 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 ++G + +E V+ HI +LR+K+ + + + +GY D Sbjct: 181 EQVWG-YQFYGDERTVDVHIKRLRQKIATETKP-FLHTVWGVGYKFDE 226 >gi|256112415|ref|ZP_05453336.1| Transcriptional regulatory protein chvI [Brucella melitensis bv. 3 str. Ether] gi|265993852|ref|ZP_06106409.1| regulatory protein BvrR [Brucella melitensis bv. 3 str. Ether] gi|262764833|gb|EEZ10754.1| regulatory protein BvrR [Brucella melitensis bv. 3 str. Ether] Length = 239 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 43/230 (18%), Positives = 80/230 (34%), Gaps = 14/230 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 L+DD + +G +E + + +++ + + Sbjct: 10 IALVDDDRNILTSVSIALESEGYRVETYTDGASALDGLMARPPNLAIFDI--KMPRMDGM 67 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILAR 111 EL R +R S +P+I ++ L G DD + KP R +A Sbjct: 68 ELLRRLRQKSDLPVIFLTSKDDEIDELFGLKMGADDFITKPFSQRLLVERVKAVLRRVAA 127 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + E G + + + +GE L E IL L G ++ Sbjct: 128 RDGTAKPAGQQAKPLERGQLVMDQERHTCTWKGEPVTLTVTEFLILHSLAQRPGVVKSRD 187 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + A Y V++ ++SHI +LRKK + F+ +++ +GY Sbjct: 188 ALMDAAYDE-QVYVDDRTIDSHIKRLRKKFKAVDDSFEMIETLYGVGYRF 236 >gi|254517714|ref|ZP_05129770.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA] gi|226911463|gb|EEH96664.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA] Length = 241 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 41/221 (18%), Positives = 94/221 (42%), Gaps = 7/221 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ +D + +G + N + E L + D+ ++ + Sbjct: 23 ILVAEDEKQISKVMKLYLEKEGYEVTLANDGKVAEDLIENNTYDLVILDIM--MPNKDGW 80 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L + +++ +++ +I S + + F+ G DD + KPI RE++ RV +K Sbjct: 81 YLLKKVKSLNNKTQVIITSARGEEEDRIFGFELGADDYMVKPISMRELVLRVGLRINSVK 140 Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + RV + R + L +E +L +L+ N+ + + + ++++G Sbjct: 141 NEYTKEIKLGNLRVDDNNRRVFENEKEIILTPKEYDLLMFLIKNKNRVFTREDLITSVWG 200 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D + V++H+ KLR+KL + + + +GYS+ Sbjct: 201 -YDFYGDTRTVDTHVKKLREKLE--FFRENLKTVWRVGYSL 238 >gi|163858929|ref|YP_001633227.1| two-component response regulator [Bordetella petrii DSM 12804] gi|163262657|emb|CAP44960.1| two-component response regulator [Bordetella petrii] Length = 232 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 42/226 (18%), Positives = 88/226 (38%), Gaps = 9/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + + + ++ L + D+ ++ L G Sbjct: 6 ILVIEDERKLAEYLKRALSEHNYVVDIAMDGISGLHLAQETQYDLILLDVML--PGRDGF 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + +R +VP++ ++ L+ + G DD + KP E+LARV A+ RR Sbjct: 64 SVLAELRKGDRVPILMLTARDKLEDRVRGLQDGADDYLAKPFALSELLARVLALSRRQSN 123 Query: 122 SNNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 S + R G L +E +L LM +G+ +++ + Sbjct: 124 SVIEPNRQNVLKVGDLELDLLRRRASRGGVRLDLTAKEFTLLALLMKKQGQVLSRLDLAE 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ + + NVVE + +LR K+ + + + R +GY ++ Sbjct: 184 QVWDI-NFNSNTNVVEVAVRRLRGKVDDPFPTKLLHTVRGMGYVLE 228 >gi|2443260|dbj|BAA22330.1| DmsR [Rhodobacter sphaeroides] Length = 232 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 41/226 (18%), Positives = 84/226 (37%), Gaps = 11/226 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + + + + E + + DV ++ GE L Sbjct: 8 LVVEDDPVSRQTLAMYLRKENHEVSEARDGEQMRRVFARGDVDVVMLDIN--MPGEDGLS 65 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +R S+V +I ++ + + G DD V KP + REIL R + RR+ Sbjct: 66 ILRELRRQSEVGIIMVTSRKEDVDRIVALELGADDYVTKPYNMREILPRAKNLARRVAAL 125 Query: 123 NNRAETGPIRVFS-------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 P F + G L R E +L A+ G+ + + Q+ + Sbjct: 126 RLVRPDQPATTFVGWTLDPAHWTLTDPAGHPVKLTRAEFELLATFAAHPGQVLTRDQLMN 185 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + G + ++ + +LR+K+ + + + +GY Sbjct: 186 HV-GRRGHDTLDRTIDVLVRRLRRKIEADPSDPRLIVTVHGIGYVF 230 >gi|315652558|ref|ZP_07905539.1| response regulator [Eubacterium saburreum DSM 3986] gi|315485187|gb|EFU75588.1| response regulator [Eubacterium saburreum DSM 3986] Length = 250 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 52/230 (22%), Positives = 92/230 (40%), Gaps = 11/230 (4%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + ++ DD + D +G + E L + + D+ I+ Sbjct: 23 LILVCDDDREIVDAIKIYLSGEGFEVIAAYDGEEAIKLMAKHKVDLLIIDIM--MPVLDG 80 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + IR +S +P+I +S + + G DD + KP + E++ARV + RR K Sbjct: 81 IRATMQIRENSTIPIIMLSAKSEDADKILGLNIGADDYLTKPFNPLELVARVKSQLRRYK 140 Query: 121 VSNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 N + P R + + ++ V GE+ L E IL L N GK + +I Sbjct: 141 KLGNMSMPEPQRVVVGDLEIDDETKEVVVAGELIKLTPIEYNILLLLAKNAGKVYSIDEI 200 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 + I+ + +N V HI +R+K+ N + +GY I+ Sbjct: 201 YEQIWNE-EAIGADNTVAVHIRHIREKIEINPKEPRYLKVVWGVGYKIEK 249 >gi|295702508|ref|YP_003595583.1| two-component response regulator [Bacillus megaterium DSM 319] gi|294800167|gb|ADF37233.1| two-component response regulator [Bacillus megaterium DSM 319] Length = 241 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 44/233 (18%), Positives = 93/233 (39%), Gaps = 17/233 (7%) Query: 2 FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +L+DD + + +G + ++ + + + D+ ++ L + Sbjct: 6 ILLVDDEIAIVKMLETVLKKEGFNQIYKAHTAQEALDVLHNQTIDIILLDVML--PDQSG 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH------------REI 108 ++ IR S ++ + S L F G DD V KP + R+ Sbjct: 64 FDICPKIRELSNAYILFTTAKVSDLDVLTGFAMGGDDYVTKPFNPLEIAARIKARLRRKQ 123 Query: 109 LARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 R S+NR E V + V G++ P + +L + N + Sbjct: 124 ALTEGTSIRTEPQSSNRYEFDRFTVDESAGELIVDGQMVSCPAQVFLLLLHFCKNMNIVL 183 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 +K+Q+ A++G +++ V++N V HI ++R+++ + + + R LGY + Sbjct: 184 SKSQLLEAVWG-YNQFVDDNTVTVHIRRIRERIEDNPSSPKHLVTVRGLGYKL 235 >gi|260494747|ref|ZP_05814877.1| phosphate regulon transcriptional regulatory protein PhoB [Fusobacterium sp. 3_1_33] gi|260197909|gb|EEW95426.1| phosphate regulon transcriptional regulatory protein PhoB [Fusobacterium sp. 3_1_33] Length = 224 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 41/221 (18%), Positives = 95/221 (42%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + + S++ E D+ ++ L Sbjct: 3 ILVVEDEKDLNNIITKHLKKNNFSVDSVYDGEEALEYLDYGNYDLIILDIML--PKMNGY 60 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-ILARVAAIYRRL 119 E+ + +RA+ P++ ++ +++ + D G DD + KP E + A + R+ Sbjct: 61 EVVKNLRANKNETPVLMLTARDAIEDKIKGLDLGADDYLIKPFDFGELLARIRAIVRRKY 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +N + + V + + G+ L +E +LEYL+ N+G+ +++ +I ++ Sbjct: 121 GNVSNELQIDDLVVDTSKKSVTRAGKNIELTGKEYEVLEYLIQNKGRVLSRDKIRDGVWD 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + E N+++ I +RKK+ + +KR LGY + Sbjct: 181 -YAYEGESNIIDVLIKNIRKKIDLGNSKPLIHTKRGLGYVL 220 >gi|260469837|ref|ZP_05813989.1| two component transcriptional regulator, winged helix family [Mesorhizobium opportunistum WSM2075] gi|259028390|gb|EEW29714.1| two component transcriptional regulator, winged helix family [Mesorhizobium opportunistum WSM2075] Length = 230 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 42/225 (18%), Positives = 79/225 (35%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD +++ G+ + D+ ++ L Sbjct: 5 ILVADDDPHIREVICFALEKAGMKTAAVSDGAAALRAIERHTPDLVVLDIG--MPEMDGL 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R S VP++ +S + + G DD V KP RE++ARV I RR + Sbjct: 63 EVCRRLRHTSDVPVLFLSARDEEIDRILGLEMGGDDYVTKPFSPRELVARVNVILRRARP 122 Query: 122 SNNRAETGPIRVF------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + L E IL+ +A + + + + Sbjct: 123 AAPEPADDRQFAHGKLILVPASHGAAFDSKPLSLTGIEFSILKGFLARPAHVLDRDAVMA 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 Y V + V+SHI +R KL D +++ +G+ + Sbjct: 183 NAY-AGKVHVADRTVDSHIRNIRAKLAAAGCLDAIETVHGVGFRL 226 >gi|291612802|ref|YP_003522959.1| PhoB family transcriptional regulator [Sideroxydans lithotrophicus ES-1] gi|291582914|gb|ADE10572.1| two component transcriptional regulator PhoB, winged helix family [Sideroxydans lithotrophicus ES-1] Length = 230 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 45/222 (20%), Positives = 88/222 (39%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +L++D +++ G + + A D+ ++ L G G ++ Sbjct: 6 ILLVEDEPAIQELLAFNVAQCGFRAIQAYDVPSALVEINRALPDLILLDWMLPGTSGVEL 65 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118 R +P+I ++ + + +SG DD + KP RE++AR+ A R Sbjct: 66 ARRLRADARTRDIPIIMLTARIDERDKILGLESGADDYITKPFSPRELMARIRAVLRRRA 125 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++S+ + + G+ L E R+L + M + + ++ Q+ ++ Sbjct: 126 PQMSDETVRVEGVELSPTTHRVSANGQNVDLGPTEFRLLHFFMTHVERVYSRAQLLDQVW 185 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G VEE V+ HI +LR+ L V + R GY Sbjct: 186 GDH-VFVEERTVDVHIRRLRQALEPSGLDGLVQTVRGSGYRF 226 >gi|238749640|ref|ZP_04611145.1| Two-component response regulator of virulence determinant [Yersinia rohdei ATCC 43380] gi|238712295|gb|EEQ04508.1| Two-component response regulator of virulence determinant [Yersinia rohdei ATCC 43380] Length = 223 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 55/223 (24%), Positives = 106/223 (47%), Gaps = 5/223 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D AL++ + G ++ + ++ D++ I+ L GE L Sbjct: 4 LVVEDNALLRHHLTVQMREMGHQVDAAEDAKEADYFLQEHAPDIAIIDLGL--PGEDGLS 61 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120 L R R+H P++ ++ S Q + ++G DD V KP H E++AR+ A + R + Sbjct: 62 LIRRWRSHQTNLPILVLTARESWQDKVAVLEAGADDYVTKPFHLEEVIARIQALMRRNIG 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 +++ + P ++ R+ V + L E I+E L+ N GK V+K + +Y Sbjct: 122 LASQVIDFPPFQIDLSRRELCVNQQQIKLTAFEYTIIETLIRNAGKVVSKDTLMLQLY-P 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 E E + ++ + +LRKKL+ + + + + R GY D N Sbjct: 181 DAELRESHTIDVLMGRLRKKLQAEHEGEVITTIRGQGYRFDTN 223 >gi|237728485|ref|ZP_04558966.1| transcriptional regulatory protein PcoR [Citrobacter sp. 30_2] gi|226909963|gb|EEH95881.1| transcriptional regulatory protein PcoR [Citrobacter sp. 30_2] Length = 226 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 38/222 (17%), Positives = 94/222 (42%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D ++G + F++ S + D+ ++ L G ++ Sbjct: 4 ILIVEDEHKTGSYLQQGLVEEGYQADLFDNGRDGLGAASKGQYDLIILDVMLPFLDGWQI 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119 + R + + P++ ++ +++ + + G DD + KP E++ARV + R Sbjct: 64 ISALRE--SGHEEPVLFLTAKDNVRDKVKGLELGADDYLIKPFDFTELVARVRTLLRRAR 121 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + V R G+ L +E +LE L+ G+ + ++ I S ++ Sbjct: 122 SQTATVCTIADMTVDMVRRTVTRSGKKIHLTGKEYVLLELLLQRTGEVLPRSLISSLVWN 181 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + + NV++ + +LR K+ + + + R GY ++ Sbjct: 182 I-NFDSDTNVIDVAVRRLRSKIDDDYEPKLIHTVRGAGYILE 222 >gi|159899244|ref|YP_001545491.1| two component transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159892283|gb|ABX05363.1| two component transcriptional regulator, winged helix family [Herpetosiphon aurantiacus ATCC 23779] Length = 226 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 49/223 (21%), Positives = 95/223 (42%), Gaps = 6/223 (2%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + +++DD V + ++ S D+ ++ L Sbjct: 5 LILVVDDEPDVAQLLSLQLTMEKYRVQIAYDGPTAIEYVRSLTPDLIILDVMLPA--MDG 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E R IR S VP++ ++ Q + DSG DD V KP ++LARV A+ RR+ Sbjct: 63 YETCRRIREFSNVPILMLTANIQDQQIVSGLDSGADDYVTKPYSPSQLLARVRALLRRIP 122 Query: 121 VSNNRAETGP--IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 G + + R+ +V+ +V L E ++L L + G+ V ++ +I+ Sbjct: 123 PQRPIITAGEGLMVLDRQRRELKVKDKVIDLTPTEYQLLILLADSVGQVVPHEKLLGSIW 182 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 G E+ + + ++ +I LR+KL + + ++ +GY + Sbjct: 183 GSGKES-DHDSLKVYIWHLRRKLEDNPRQPKILLTEWGVGYRL 224 >gi|121602059|ref|YP_988753.1| DNA-binding response regulator [Bartonella bacilliformis KC583] gi|120614236|gb|ABM44837.1| DNA-binding response regulator [Bartonella bacilliformis KC583] Length = 228 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 47/222 (21%), Positives = 88/222 (39%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D F + G + + + L + R DV I+ L + L Sbjct: 3 ILIIEDDRETGRYLEKAFLEAGHAADIACDGDTGYALAETERYDVMIIDRMLPHR--DGL 60 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118 + +RA P++ +S + + +G DD + KP E+ V + Sbjct: 61 SIISELRAKGNETPVLILSALGQVDDRVMGLRAGGDDYLTKPYAFSELLARVEVLQRRKN 120 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 K + G + + + L RE R+LEYLM + G+ V +T + ++ Sbjct: 121 PKEAETVYCVGDLELDRLSHTVKRGEMNITLQPREFRLLEYLMRHAGQVVTRTMLLENVW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + NV++ HIS+LR K+ + + R GY + Sbjct: 181 D-YHFDPQTNVIDVHISRLRAKIEKDFDIPLLHTVRGAGYML 221 >gi|186684290|ref|YP_001867486.1| two component transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186466742|gb|ACC82543.1| two component transcriptional regulator, winged helix family [Nostoc punctiforme PCC 73102] Length = 239 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 38/225 (16%), Positives = 86/225 (38%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V++ +E + + + ++ L Sbjct: 11 ILIVDDDFGVRNLVHRFLSRK-YQIEAAADGKTALSMFEQFNPALVILDWNL--PDVNGY 67 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI----HHREILARVAAIYR 117 L + +++ + V ++ ++ + +G DD + KP I A + I Sbjct: 68 SLCQEMQSRTNVLVLILTSRTDEADKIKILSAGADDFMTKPFSLAEVEVRIEALLRRIRY 127 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 R + + +GR+ + ++ L E IL +L ++ + ++ Q+ I Sbjct: 128 INPSPTQRIIFKQLVINPEGREVILNDKLLGLTALEFNILHFLASHPNQAWSRPQLIQKI 187 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 +G D + VV+ HI +LRKK+ + + + + R GY + Sbjct: 188 WGC-DYVGDGRVVDVHIGQLRKKMEVDPSVPEFIKTVRGYGYKFE 231 >gi|320353761|ref|YP_004195100.1| winged helix family two component transcriptional regulator [Desulfobulbus propionicus DSM 2032] gi|320122263|gb|ADW17809.1| two component transcriptional regulator, winged helix family [Desulfobulbus propionicus DSM 2032] Length = 223 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 49/221 (22%), Positives = 88/221 (39%), Gaps = 6/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + G S R D+ ++ L G + Sbjct: 4 ILVVEDEQRLASILADYLHAAGYSTHCLGEGRGVVAWVRGNRPDLILLDLML--PGRDGM 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IR S VP+I ++ L + G DD V KP RE+ + Sbjct: 62 EICKEIRTFSTVPIIMVTARIEEIDRLLGLELGADDYVCKPFSPREV--VARVKAVLRRT 119 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 S +RV + + G L E ++L +L+A+ G+ ++ Q+ +Y Sbjct: 120 SARTPAPHGLRVDASTMRVSLDGHHLDLTAVEFKLLAFLLAHPGRIYSREQLMEGMY-PD 178 Query: 182 DEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 V + ++SHI KLR+KL + G + + S +GY+ D Sbjct: 179 QRIVNDRTIDSHIKKLRRKLDLARSGCNLIRSVYGVGYTFD 219 >gi|58040033|ref|YP_191997.1| two component response regulator [Gluconobacter oxydans 621H] gi|58002447|gb|AAW61341.1| Two component response regulator [Gluconobacter oxydans 621H] Length = 241 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 42/229 (18%), Positives = 86/229 (37%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ + + ++ + ++ L GE L Sbjct: 9 LLVVDDDREIRELLSQFLERNHFRVTAARDAREARKAWANGHYQLVVLDLML--PGESGL 66 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R+ VP+I ++ + +SG DD V KP + RE+LAR+ A+ RR Sbjct: 67 EVARWLRSQDNVPIIMLTAMSDETDRIIGLESGADDYVAKPFNPRELLARIRAVLRRTVD 126 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF---------PLPRRERRILEYLMANRGKRVAKTQ 172 ++ + R L E +L L+ + + + Sbjct: 127 VEDKRQAADTRKIHFAGWCLDPVRRRLLNPDGAEVSLTGGEYDLLMALLERANRVLTRDM 186 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 + + G + ++ IS+LR+KL + + + R GY + Sbjct: 187 LLELLRGRQAGPFD-RAIDVAISRLRRKLEDDGRNAQVIKTVRGGGYVL 234 >gi|296268693|ref|YP_003651325.1| winged helix family two component transcriptional regulator [Thermobispora bispora DSM 43833] gi|296091480|gb|ADG87432.1| two component transcriptional regulator, winged helix family [Thermobispora bispora DSM 43833] Length = 222 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 44/221 (19%), Positives = 85/221 (38%), Gaps = 7/221 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L +D + + +G +E S D+ ++ L LE Sbjct: 5 LLAEDDTSISEPLARALRREGYQVEVSPDGPQALERALSGGIDLIVLDLGL--PEMDGLE 62 Query: 63 LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R IRA P++ ++ T+ D+G DD V KP E+ + Sbjct: 63 VARRIRAEGHGTPVLILTARVDEVDTVVGLDAGADDYVTKPFRLAEL--LARVRALLRRG 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + +R+ +D R + + L +E +L L+ + GK V + QI ++ Sbjct: 121 QSETPVVQGVRIDADSRRAWLGDKELHLTTKEFDLLRVLVRDAGKVVTREQIMREVWDT- 179 Query: 182 DEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221 + ++ HIS LR+KL + + + R +G+ + Sbjct: 180 NWWGSTKTLDMHISWLRRKLGDDASKPRYITTVRGVGFRFE 220 >gi|294012877|ref|YP_003546337.1| two-component system phosphate regulon response regulator PhoB [Sphingobium japonicum UT26S] gi|292676207|dbj|BAI97725.1| two-component system phosphate regulon response regulator PhoB [Sphingobium japonicum UT26S] Length = 233 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 51/223 (22%), Positives = 102/223 (45%), Gaps = 5/223 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61 +L++D A + + I F + + E L D+ ++ + G +V Sbjct: 7 LLVEDDAALAELLIWHFKREDFEVVHTVDGEEALLLAQENMPDIVLLDWMVESLSGIEVC 66 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 R + + VP+I ++ + + ++G DD V KP RE++ARV A+ RR++ Sbjct: 67 RRLRRMNGTANVPIIMLTARGEEEDRVRGLETGADDYVTKPFSPRELVARVGAVLRRVRP 126 Query: 122 --SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + + + G G+V PL E R+L++ + + G ++ ++ +++G Sbjct: 127 ALAGETLTFADVEMDTVGHKVRRGGQVIPLGPTEFRLLKHFLEHPGWVFSRERLLDSVWG 186 Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 D +E V+ HI +LRK + D + + R GY++D Sbjct: 187 Q-DSDIELRTVDVHIRRLRKAINADGRHRDIIRTVRSAGYALD 228 >gi|239995786|ref|ZP_04716310.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Alteromonas macleodii ATCC 27126] Length = 226 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 39/221 (17%), Positives = 83/221 (37%), Gaps = 6/221 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L++D V +G SS D ++ L Sbjct: 4 LLVEDDPKVASHIANGLLGEGHECITVGDGTSGYQQASSNELDAVILDVML--PELDGFS 61 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRRL 119 + +R P++ +S ++ + +G +D + KP E+ A + Sbjct: 62 VLEKLREEGNTTPVLLLSAKSQVEDKVKGLRTGANDYLTKPFAFEELLARVEGLAGRNKE 121 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + G + + R + L +E ++LE L+ ++GK V ++ + ++ Sbjct: 122 GEDKTLIKVGDLTLDLVNRKVLRGDQEIDLQSKEFQLLECLLRHKGKVVTRSMLLEQVWN 181 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + NV++ HIS+LR+K+ +++ R GY I Sbjct: 182 -YHFDPQTNVIDVHISRLRQKVDKAFNVPLIETVRGTGYRI 221 >gi|229101412|ref|ZP_04232155.1| Two-component response regulator [Bacillus cereus Rock3-28] gi|228681988|gb|EEL36122.1| Two-component response regulator [Bacillus cereus Rock3-28] Length = 230 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 43/220 (19%), Positives = 77/220 (35%), Gaps = 6/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L+DD + + G + +S E + ++ Sbjct: 4 ILLVDDEPRMLELLTLYLTPIGYNCVCASSGEEAILHIENRNFKFVLLDIM--MPKMDGW 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + IR+ S VP+I ++ + G DD V KP H E+ R Sbjct: 62 DTCKKIRSFSNVPIIMVTARDQTVDVVQGLKLGADDYVTKPFHEEEL-FARIEAVLRRTN 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + + I V E L E +L + + +++ Q+ I+GL Sbjct: 121 EHKQIQYHGILWDEAKHFASVYNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGL- 179 Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219 + E+ V+SHI LR KLR + + +GY Sbjct: 180 NTNTEDRTVDSHIRNLRDKLRKANFPIDHHLKTVYGVGYR 219 >gi|187919636|ref|YP_001888667.1| two component heavy metal response winged helix family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187718074|gb|ACD19297.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia phytofirmans PsJN] Length = 223 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 43/220 (19%), Positives = 95/220 (43%), Gaps = 4/220 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D D + G +++ + + D+ ++ L G Sbjct: 3 ILVIEDDPKTGDYLKKGLRESGYAVDLARTGTDGLHMALENAYDLVVLDVML--PGIDGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R +R +P+I ++ + + + G DD + KP E++ R+ + RR + Sbjct: 61 EIMRALRTRRDLPVIFLTARDHVSDRIRGLELGADDYLVKPFSFTELVLRIRTLLRRGVI 120 Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + ++ R +G PL +E +L L+ +G+ +++TQI S ++ + Sbjct: 121 RESDVFEIADLKLDVLRRKVTREGVEIPLTNKEFMLLHLLVRRQGEALSRTQIASEVWDM 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + NVV+ I +LR K+ + + + R +GY+ Sbjct: 181 -NFDSDTNVVDVAIKRLRAKVDHPFEKKLIHTVRSIGYTF 219 >gi|170724659|ref|YP_001758685.1| two component transcriptional regulator [Shewanella woodyi ATCC 51908] gi|169810006|gb|ACA84590.1| two component transcriptional regulator, winged helix family [Shewanella woodyi ATCC 51908] Length = 243 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 43/224 (19%), Positives = 88/224 (39%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + + + +L+ D+ I+ L L Sbjct: 15 ILLVEDEPDLANLVKLNLNTLNFDVIHCTTLKQANQNLELKSFDLILIDRTL--PDGDGL 72 Query: 62 ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117 L + + A + P + ++ S + +SG DD + KP E+ ARV Sbjct: 73 MLCQQLRHAGKETPCMMLTAKDSEADIVLGLESGADDYLTKPFSVLELRARVKALLRRGH 132 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + + + I + D R+ L RE +L ++ + + ++ Q+ A+ Sbjct: 133 QTEHEEQQLDFNGITINCDTREVIAFDTQLELTAREFDLLLFMAKHPKQVFSRLQLLEAV 192 Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 +G + + E+ V SHI++LR KL + + V + +GY Sbjct: 193 WG-YSYSGYEHTVNSHINRLRAKLSHCTPAAELVKTVWGVGYKF 235 >gi|313124174|ref|YP_004034433.1| DNA-binding response regulator, ompr family (rec-whth domains) [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280737|gb|ADQ61456.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains) [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|325685788|gb|EGD27861.1| DNA-binding response regulator [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 237 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 44/229 (19%), Positives = 81/229 (35%), Gaps = 14/229 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G N+ S D ++ L L Sbjct: 4 ILIVEDEKNLARFVELELQHEGYETVVENNGRKALDRALSEDFDAILLDLML--PDLNGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----------REILA 110 E+ R +R P+I ++ S+ + D G DD + KP R + Sbjct: 62 EIARRVRQSKTTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVKI 121 Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 A +L ++ G+ L +RE +L L+ N+ V + Sbjct: 122 EKDASKDKLPRQKVVKFKDLTIETANRIVHRGDGKTVDLTKREYNLLMTLIENKNNVVGR 181 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 Q+ + I+G + +E NVVE ++ LR K+ + + R GY Sbjct: 182 DQLLNKIWG-PESNIETNVVEVYVRYLRNKIDIPGQPSYIKTVRGTGYM 229 >gi|260914634|ref|ZP_05921100.1| transcriptional regulatory protein OmpR [Pasteurella dagmatis ATCC 43325] gi|260631233|gb|EEX49418.1| transcriptional regulatory protein OmpR [Pasteurella dagmatis ATCC 43325] Length = 260 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 38/228 (16%), Positives = 86/228 (37%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD + + +F + G ++ + L + + ++ L L Sbjct: 28 ILVIDDDVQICELLTDIFEEHGYTVVTAQTGTQALSLLQTTHFSLIFLDLIL--PDVNGL 85 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L + +++ S P+I +S S + + G DD + KP + R ++AR RR Sbjct: 86 VLLQRLKSISSAPVIMLSGLDSESDIVVGLEMGADDYIAKPFYPRVVVARAKVALRRHHP 145 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEV--------FPLPRRERRILEYLMANRGKRVAKTQI 173 + + + L + E +L L+++ K +++ ++ Sbjct: 146 QLFTNPNIQQGFTFNHWVLDTENHKLFSPQKQEIDLTQGEYTLLHALVSHAQKVLSREKL 205 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + + + ++ I +LRKK+ N + + R +GY Sbjct: 206 LE-LTHSESLEIFDRTIDVLIMRLRKKIEPNPKAPTYIQTVRGMGYLF 252 >gi|237730523|ref|ZP_04561004.1| DNA-binding transcriptional activator CusR [Citrobacter sp. 30_2] gi|226906062|gb|EEH91980.1| DNA-binding transcriptional activator CusR [Citrobacter sp. 30_2] Length = 227 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 37/223 (16%), Positives = 98/223 (43%), Gaps = 6/223 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + + G ++ ++ L + D+ ++ L + Sbjct: 4 LIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLLILDIML--PDVNGWD 61 Query: 63 LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119 + R++R A+ +P++ ++ +++ + + G DD + KP E+LARV Sbjct: 62 IVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGAA 121 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + ++ + + V R G L +E +LE+ + ++G+ + ++ I S ++ Sbjct: 122 VIVESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIASQVWD 181 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + + + N ++ + +LR K+ N + + R +GY ++ Sbjct: 182 M-NFDSDTNAIDVAVKRLRAKIDNDFEPKLIQTVRGVGYMLEV 223 >gi|254283288|ref|ZP_04958256.1| phosphate regulon transcriptional regulatory protein PhoB [gamma proteobacterium NOR51-B] gi|219679491|gb|EED35840.1| phosphate regulon transcriptional regulatory protein PhoB [gamma proteobacterium NOR51-B] Length = 236 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 46/224 (20%), Positives = 95/224 (42%), Gaps = 6/224 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 +++DD ++D +++ L R D+ ++ L G G ++ Sbjct: 6 ILVVDDEYAIRDMLRMALEIADFDCIETDNISDAHSLVVDERPDLVLLDWMLPGGSGIEL 65 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118 L + A +P+I ++ + + + G DD + KP RE++AR+ A + Sbjct: 66 LRRLKRSEATRAIPVIMLTAKSAEDNVIQGLEVGADDYLTKPFAPRELVARIKALLRRSQ 125 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 N R + + +DGR + + + E +L + M + + +++Q+ ++ Sbjct: 126 GMEDNQRLAFEELLLDADGRRVYLADKPISMGPTEYNLLYFFMTHPERAYSRSQLLDHVW 185 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGF--DPVDSKRFLGYSI 220 G + VEE V+ HI +LRK L++ + + R GY Sbjct: 186 GA-NVYVEERTVDVHIRRLRKALQSHGKDYSGLIQTVRGTGYRF 228 >gi|188591029|ref|YP_001795629.1| DNA-binding response regulator creb [Cupriavidus taiwanensis LMG 19424] gi|170937923|emb|CAP62907.1| response regulator, CheY family [Cupriavidus taiwanensis LMG 19424] Length = 231 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 49/224 (21%), Positives = 89/224 (39%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + D + DG+ E +A+ D+ ++ L Sbjct: 9 ILVVEDEQAIADTILYALRTDGMLAEHCTLGGDALACLRAAQADLLILDVGL--PDLSGF 66 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118 E+ R +R S P+I ++ + + G DD V KP RE + + R Sbjct: 67 EVCRTLRTFSDAPVIFLTARHEEIDRIVGLEIGADDYVVKPFSPRELAARVRAILRRARG 126 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + E DG G L R E +L +L+A+ G+ ++ Q+ A++ Sbjct: 127 GGATAKPGEAAGFTHDKDGARLAYHGHWLALTRYEYLLLAWLVAHPGRIYSRAQLMDAVW 186 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL--GFDPVDSKRFLGYSI 220 + V++HI LR KLR G + + + R +GYS+ Sbjct: 187 -AGALDTSDRTVDTHIKTLRAKLREVSAEGAERIRTHRGMGYSL 229 >gi|167465417|ref|ZP_02330506.1| two-component response regulator [Paenibacillus larvae subsp. larvae BRL-230010] gi|322383772|ref|ZP_08057523.1| two-component response regulator YkoH-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321151984|gb|EFX44927.1| two-component response regulator YkoH-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 229 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 42/224 (18%), Positives = 87/224 (38%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + +G ++E N L + ++ Sbjct: 5 ILVVDDDEKITSMLRRGLAFEGYTVEVANDGSQGLRLMMEYDPQLMILDVM--MPHVDGW 62 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI----HHREILARVAAIY 116 E+ R +R S VP++ ++ + + D G DD + KP + + Sbjct: 63 EVCRRVREGGSDVPILMLTAKDEISDRVKGLDIGADDYLVKPFALEELLARVRVLLRRRS 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 R + N+ I + D R+ + ++ L +E +L + N + +++ I Sbjct: 123 ERPERPTNKLTYQDIAMDLDTREVFREDKLIELTTKEFDLLHLFLLNPRRVLSRDLIMDK 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I+G +D + E NV+E +I+ LR+K + + R GY + Sbjct: 183 IWG-YDYSGESNVLEVYIALLRQKTEEHGHKRIIQTVRGAGYVL 225 >gi|148378772|ref|YP_001253313.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 3502] gi|153931201|ref|YP_001383160.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|153936292|ref|YP_001386708.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|148288256|emb|CAL82330.1| two-component response regulator [Clostridium botulinum A str. ATCC 3502] gi|152927245|gb|ABS32745.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|152932206|gb|ABS37705.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] Length = 230 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 49/226 (21%), Positives = 87/226 (38%), Gaps = 9/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + + S D+ ++ L G Sbjct: 7 ILVVEDNNDINKLLCDMLRQSEYITKSAYSGTEALIYLKEYNWDMVLLDLML--PGMDGK 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL IR +P+I IS ++ G DD + KP E+ AR+ + RR K Sbjct: 65 ELLSNIRKSKPMPVIIISAKEEKDIKIETLRMGADDYITKPFDIDEVSARIDSHLRRYKE 124 Query: 122 SNNRA-----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 +N + I + D R+ + + L RE IL+ LM K K +F + Sbjct: 125 FSNITLQNLLKYKEISLNKDTREVFIHNKQIMLTTREFDILQLLMGYPKKVFTKANLFES 184 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 ++ + ++N + HIS LR KL + + + +GY +D Sbjct: 185 VWS-SEYLCDDNTINVHISNLRNKLSKAGTDNEYIQTIWGIGYKLD 229 >gi|154251384|ref|YP_001412208.1| two component transcriptional regulator [Parvibaculum lavamentivorans DS-1] gi|154155334|gb|ABS62551.1| two component transcriptional regulator, winged helix family [Parvibaculum lavamentivorans DS-1] Length = 223 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 53/221 (23%), Positives = 104/221 (47%), Gaps = 9/221 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + ++ D G ++ E +L + D ++ L + Sbjct: 3 LLVVEDDPDLNRQLVSALEDAGYVVDSAKDGEEGHYLGDTEPYDAVVLDLGL--PEMDGV 60 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R + +P++ ++ + FD+G DD V KP E+LAR+ A+ RR Sbjct: 61 TVLEKWRRDGRVMPVLILTARDRWSDKVAGFDAGADDYVAKPFFMEEVLARLRALLRRAT 120 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +++ E GP+RV + V G L E R+L Y+M ++G+ +++T++ +Y Sbjct: 121 GHASSELECGPVRVDTRSSRVTVNGRAIKLTSLEYRLLSYMMHHQGRVISRTELVEHLYD 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D + N +E + +LR+KL G D +++ R LGY + Sbjct: 181 Q-DFDRDSNTIEVFVGRLRRKL----GKDVIETVRGLGYRL 216 >gi|71907879|ref|YP_285466.1| two component heavy metal response transcriptional regulator [Dechloromonas aromatica RCB] gi|71847500|gb|AAZ46996.1| two component heavy metal response transcriptional regulator, winged helix family [Dechloromonas aromatica RCB] Length = 225 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 41/223 (18%), Positives = 94/223 (42%), Gaps = 6/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D D + G ++ L + D++ ++ L G Sbjct: 3 ILVVEDEQKTGDYLRQGLMEAGFIVDLARDGFDGLHLALTEAYDLAVLDVML--PGIDGW 60 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118 ++ + IR A +P++ ++ ++ + + G DD + KP E+LARV Sbjct: 61 QVLQGIRRAGKDMPVLFLTARDDVEDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGG 120 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++ + + R G+ L +E +LE L+ +G+ + ++ I S ++ Sbjct: 121 KAKESDLLNAADLELDLMRRRVTRSGKKIDLTSKEFALLEVLLRRQGEVLPRSLIASQVW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + + NV+E I +LR K+ + + + R +GY ++ Sbjct: 181 DM-NFDSDTNVIEVAIRRLRAKVDDGFEPKLIRTVRGMGYVLE 222 >gi|78046340|ref|YP_362515.1| OmpR family two-component response regulator [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78034770|emb|CAJ22415.1| two-component system regulatory protein, OmpR family [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 259 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 47/227 (20%), Positives = 96/227 (42%), Gaps = 12/227 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD ++ G ++ ++ + + R D+ ++ GE L Sbjct: 29 LVVDDDPDLRKLIGEFLSAHGYQVDMAENVAEMRSVMAQRRPDLIVLDVM--MPGEDGLS 86 Query: 63 LPRIIRAHSQVP-LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 R + + P +I +S + + + G DD + KP + RE+LARV A+ RR + Sbjct: 87 AARALASERGSPAVIMLSALGNDTDRIIGLEVGADDYLAKPCNPRELLARVRALLRRSQA 146 Query: 122 SNNRAETGPIRVFSDGRD--------PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 SN +A+ G + G L E +L + + + +++ Q+ Sbjct: 147 SNEQADQRGNVYEFAGWRLDVVRRDLRDPTGIFINLSDGEFALLRTFVEHPQRVLSRDQL 206 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G D V + ++S IS+LR+K+ ++ + + + R GY + Sbjct: 207 LDYARGR-DTDVYDRAIDSQISRLRRKINERVHTELIRTVRNEGYML 252 >gi|47567681|ref|ZP_00238391.1| two-component response regulator [Bacillus cereus G9241] gi|229156443|ref|ZP_04284534.1| Two component transcriptional regulator, winged helix [Bacillus cereus ATCC 4342] gi|47555658|gb|EAL13999.1| two-component response regulator [Bacillus cereus G9241] gi|228626946|gb|EEK83682.1| Two component transcriptional regulator, winged helix [Bacillus cereus ATCC 4342] Length = 215 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 37/220 (16%), Positives = 94/220 (42%), Gaps = 11/220 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++ DD + A F + + E + + D++ ++ + Sbjct: 4 LIADDEQDMLRILKAYFEKEDFEVLLAKDGEEALQIFYDEKIDLAILDWM--MPKYSGIT 61 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + I+ +S V ++ ++ + L SG D+ V KP H ++ R ++L Sbjct: 62 VCQEIKKNSSVKVLMLTAKSESEDELAALQSGADEYVKKPFHPGVLITRA----KKLIQH 117 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 ++ + +++ + + + E +++ + ++G + + ++ ++G FD Sbjct: 118 DDVIQVQDLKIDFTKNKVYKNDKELDITKTELELIKCFLNHKGMILTRKKLLDIVWG-FD 176 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 EE V++H+ +LRKK+ + + + R LGYS++ Sbjct: 177 YFGEERTVDTHVRRLRKKVGE----NIIKTHRGLGYSLEE 212 >gi|302188629|ref|ZP_07265302.1| two component transcriptional regulator [Pseudomonas syringae pv. syringae 642] Length = 220 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 46/223 (20%), Positives = 95/223 (42%), Gaps = 9/223 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D + +G +G +++ S D++ ++ L Sbjct: 3 LLLIEDDVALGEGIQQALSREGYTVDWIKDGSSALHALLSESFDLAILDVGL--PTLSGF 60 Query: 62 ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119 E+ R + + S +P++ ++ + + + D G DD + KP E+ AR+ A + R Sbjct: 61 EVLRRLRHSGSTLPVMILTARDATEDRIIGLDIGADDYLVKPFDVSELKARLRALLRRSA 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + E IR+ + L +E ++L L++ G+ + + ++ +YG Sbjct: 121 GRAKVLIEHNGIRLDPSTQQVSYHDAAVALTPKEYQLLYELLSPPGRVMTRERLMQLLYG 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 ++E E N +E HI LRKK + + R +GY ++ Sbjct: 181 -WNEEAESNTLEVHIHHLRKK----FSSTLIRTIRGVGYLVEE 218 >gi|241763559|ref|ZP_04761611.1| two component heavy metal response transcriptional regulator, winged helix family [Acidovorax delafieldii 2AN] gi|241367290|gb|EER61630.1| two component heavy metal response transcriptional regulator, winged helix family [Acidovorax delafieldii 2AN] Length = 227 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 37/223 (16%), Positives = 86/223 (38%), Gaps = 6/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G + + L D+ ++ L G Sbjct: 3 ILIVEDEPKTGEYLRQGLSEAGFVADLAQNGSDGLHLALQGEYDLVILDVML--PGLDGW 60 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118 ++ + +R Q+P++ ++ ++ + + G DD + KP E+ R R Sbjct: 61 QVLQSLRNRGLQMPVLFLTARDQVEDRVKGLELGADDYLVKPFSFAELLARVRTILRRGR 120 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 N + + R G L +E +LE L+ G+ + ++ I S ++ Sbjct: 121 GGTETNTLRVADLELDLLRRRVSRGGRRIDLTAKEFGLLELLLRRHGEVLPRSLIASQVW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + + NV+E + +LR K+ + + R +GY ++ Sbjct: 181 DM-NFDSDTNVIEVAMRRLRLKIDEGQDVKLIQTVRGMGYVLE 222 >gi|229588502|ref|YP_002870621.1| tw-component system, response regulator [Pseudomonas fluorescens SBW25] gi|229360368|emb|CAY47225.1| tw-component system, response regulator [Pseudomonas fluorescens SBW25] Length = 230 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 46/220 (20%), Positives = 87/220 (39%), Gaps = 4/220 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++I+D D + G +++ L V ++ L G Sbjct: 4 LIIEDEEKTADYLHRGLTEQGYTVDVAREGVEGLHLALENDYAVIVLDVML--PGLDGFG 61 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLKV 121 + R +RA Q P+I ++ ++ + G DD + KP E++AR+ A R Sbjct: 62 VLRALRARKQTPVIMLTARERVEDRIRGLREGADDYLGKPFSFLELVARLQALTRRSGGH 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + + R G L +E +L L +G+ ++KT I ++ + Sbjct: 122 EPVQVTVADLWIDLISRKASRNGVRLDLTAKEFSLLSVLARRQGEILSKTAIAEMVWDI- 180 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + NVVE I +LR KL + + R +GY ++ Sbjct: 181 NFDSDANVVEVAIKRLRAKLDGPFEQKLLHTIRGMGYVLE 220 >gi|149178427|ref|ZP_01857017.1| two component transcriptional regulator, winged helix family protein [Planctomyces maris DSM 8797] gi|148842744|gb|EDL57117.1| two component transcriptional regulator, winged helix family protein [Planctomyces maris DSM 8797] Length = 231 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 50/222 (22%), Positives = 101/222 (45%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A + D + ++G +E L +S D+ ++ +L E + Sbjct: 5 ILVVEDEARIADFLVRGLSEEGYGVEHAEDGRIGWLLLNSETWDLVILDWWL--PVEDGI 62 Query: 62 ELPRI-IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +L R + + P++ ++ ++ + D+G DD + KP E+LARV A+ RR Sbjct: 63 QLLRRFRQKNRTTPVLFLTARDAVTERVTGLDAGADDYLTKPFAFDELLARVRALLRRPG 122 Query: 121 VSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++ E IR + + G L +E +L + + N GK +++T+I+ ++ Sbjct: 123 QASGVVLEYADIRADLETQRVTRGGTPLDLTAKEFSLLLFFLRNPGKVLSRTRIYDTVWD 182 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 N +E H+ +LR KL G + + R GY ++ Sbjct: 183 DS-YDGLSNTLEVHVKELRHKLEAC-GPRVIQTLRGRGYVLE 222 >gi|119962132|ref|YP_946602.1| two-component system response regulator [Arthrobacter aurescens TC1] gi|119948991|gb|ABM07902.1| two-component system response regulator [Arthrobacter aurescens TC1] Length = 246 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 54/222 (24%), Positives = 90/222 (40%), Gaps = 8/222 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + G S+ L R DV ++ L G +E Sbjct: 25 LVVDDEPSLAELMSMGLRMAGWSVAVAGDGPGAVKLAKDFRPDVLVLDVML--PGFDGVE 82 Query: 63 LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118 + IR +VP + ++ ++Q + +G DD V KP E L R+ Sbjct: 83 VLNRIRTFAPEVPALFLTAKDAVQDRIVGLAAGGDDYVTKPFSMEEVLLRLHRLVQRSGV 142 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + G + + D R+ GE L + +L YLM N + V+K QI ++ Sbjct: 143 AAMDTAELVVGDLTLNVDTREVTRGGEDISLTATQFELLRYLMENPKRVVSKAQILDRVW 202 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D + N+VE +IS LRKK+ + + R GY I Sbjct: 203 D-YDFGGQANIVELYISYLRKKIEAN-HPPMIHTIRGAGYVI 242 >gi|121593850|ref|YP_985746.1| two component heavy metal response transcriptional regulator [Acidovorax sp. JS42] gi|120605930|gb|ABM41670.1| two component heavy metal response transcriptional regulator, winged helix family [Acidovorax sp. JS42] Length = 227 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 37/223 (16%), Positives = 86/223 (38%), Gaps = 6/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G + + L D+ ++ L G Sbjct: 3 ILIVEDEPKTGEYLRQGLSEAGFVADLAQNGSDGLHLALQGEYDLVILDVML--PGLDGW 60 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118 ++ + +R Q+P++ ++ ++ + + G DD + KP E+ R R Sbjct: 61 QVLQSLRNRGLQMPVLFLTARDQVEDRVKGLELGADDYLVKPFSFAELLARVRTILRRGR 120 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 N + + R G L +E +LE L+ G+ + ++ I S ++ Sbjct: 121 GGTETNTLRVADLELDLLRRRVSRGGRRIDLTAKEFGLLELLLRRHGEVLPRSLIASQVW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + + NV+E + +LR K+ + + R +GY ++ Sbjct: 181 DM-NFDSDTNVIEVAMRRLRLKIDEGQDVKLIQTVRGMGYVLE 222 >gi|323139801|ref|ZP_08074835.1| two component transcriptional regulator, winged helix family [Methylocystis sp. ATCC 49242] gi|322394937|gb|EFX97504.1| two component transcriptional regulator, winged helix family [Methylocystis sp. ATCC 49242] Length = 227 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 56/220 (25%), Positives = 100/220 (45%), Gaps = 9/220 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G +++ E ++L + D ++ L + + Sbjct: 3 LLVVEDDKDLNRQIVQALEQSGYAVDRAFDGEEGQYLGDNEPYDAVVLDIGL--PKKDGI 60 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + RA + +P++ ++ + FD+G DD V KP H E+LAR+ A+ RR Sbjct: 61 TVLEEWRAAGRDMPVLILTARDRWSEKVQGFDAGADDYVAKPFHMEEVLARIRALLRRRT 120 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + N G +R+ + V G L E R+L YLM + G+ V++ +I +Y Sbjct: 121 GHATNELVCGAVRLDTKSGRVVVDGAPVKLTSHEYRLLAYLMHHSGRVVSRGEIIEHLYD 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 D + N VE + +LRKKL G D + + R LGY Sbjct: 181 Q-DFDRDSNTVEVFVGRLRKKL----GVDLIQTVRGLGYM 215 >gi|107099448|ref|ZP_01363366.1| hypothetical protein PaerPA_01000460 [Pseudomonas aeruginosa PACS2] gi|218889203|ref|YP_002438067.1| DNA-binding response regulator CreB [Pseudomonas aeruginosa LESB58] gi|296386961|ref|ZP_06876460.1| DNA-binding response regulator CreB [Pseudomonas aeruginosa PAb1] gi|313111910|ref|ZP_07797700.1| two-component response regulator CreB [Pseudomonas aeruginosa 39016] gi|218769426|emb|CAW25186.1| two-component response regulator CreB [Pseudomonas aeruginosa LESB58] gi|310884202|gb|EFQ42796.1| two-component response regulator CreB [Pseudomonas aeruginosa 39016] Length = 229 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 56/222 (25%), Positives = 97/222 (43%), Gaps = 8/222 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A + D + +G + LQ D+ ++ L Sbjct: 4 ILIVEDEAAIADTLLYALQAEGFATTWVTLAGEALALQERQPADLLILDVGL--PDISGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E + +R S+VP+I ++ + + + G DD V KP RE+ ARV AI +R+ Sbjct: 62 EACKRLRRFSEVPVIFLTARDAEIDRVVGLEIGADDYVVKPFSPREVAARVKAILKRMAP 121 Query: 122 SN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 A +GP +V + + L R E R+L+ L+ + ++ Q+ A+ Sbjct: 122 RPAALEGAAPSGPFQVDEERVRIHYRDTPLNLTRHEFRLLQTLLGQPERVFSREQLLDAL 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218 G+ EA E ++SHI LR KLR + + + R LGY Sbjct: 182 -GVASEAGYERNIDSHIKSLRAKLRQVNERGEAIQTHRGLGY 222 >gi|163847561|ref|YP_001635605.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222525411|ref|YP_002569882.1| winged helix family two component transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163668850|gb|ABY35216.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222449290|gb|ACM53556.1| two component transcriptional regulator, winged helix family [Chloroflexus sp. Y-400-fl] Length = 246 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 44/224 (19%), Positives = 88/224 (39%), Gaps = 9/224 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + +G+ + + D+ ++ E Sbjct: 10 LVVDDEPRMITFMRMNLELEGMRVTTATNGREAVEKVREEMPDIVLLDIM--MPVMDGFE 67 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 R IR+ SQVP+I ++ + + + G DD V KP RE+++R+ A+ RR Sbjct: 68 ALRRIRSFSQVPVIILTAKDEEEDRVRGLELGADDYVGKPFSQRELVSRIRAVLRRHYTQ 127 Query: 123 NNRAETGPIRVFSDGRDPEVQG-----EVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 +T D + + L E R+L +L+ N G + + S + Sbjct: 128 PPIPQTLVKVDDRLSIDFARREVLVDGKRVNLRPTEYRLLYHLVQNAGYVLTHEMLLSKV 187 Query: 178 YGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220 +G E + + +I+ LR+K+ + + ++R +GY Sbjct: 188 WGPEYRD-ESHYLRLYITYLRQKIEEDPSNPKYILTERGVGYRF 230 >gi|330965404|gb|EGH65664.1| KDP operon transcriptional regulatory protein kdpE [Pseudomonas syringae pv. actinidiae str. M302091] Length = 230 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 43/223 (19%), Positives = 86/223 (38%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD ++ G + + + + D+ ++ L Sbjct: 7 ILVIDDEPQIRKFLRISLVSQGYKVLEAATGAEGLTQAALNKPDLLVLDLGL--PDMDGQ 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 ++ R S VP++ +S S + D+G +D V KP +E LARV Sbjct: 65 QVLSEFREWSAVPVLVLSVRASEVQKVQALDAGANDYVTKPFGIQEFLARVRALLRQVSG 124 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + GP+ V R + G+ L R+E +L L + G+ + + Q+ I+ Sbjct: 125 SDKPESALRFGPLTVDLAYRRVLLDGQEVALTRKEYSVLAQLARHPGRVITQQQLLKDIW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 G + + + + LR+KL + + ++ +GY + Sbjct: 185 GPTHTE-DSHYLRIVVGHLRQKLGDDPTAPRFIITEAGIGYRL 226 >gi|317499546|ref|ZP_07957810.1| response regulator receiver domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] gi|316893200|gb|EFV15418.1| response regulator receiver domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 224 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 35/221 (15%), Positives = 85/221 (38%), Gaps = 7/221 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + F + D+ ++ + Sbjct: 5 ILVVDDDKELVKMLCSYFNMKQYETITATDGMEALNKI-EMKPDIILLDIN--MPRMDGI 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY---RR 118 E+ R+IR+ P++ ++ ++ SG DD + KP RE+ AR+ R Sbjct: 62 EVCRLIRSKVLCPILFLTARVDEDDKINGLLSGGDDYITKPFSLRELEARIVTNIKREER 121 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + + + + G + E +I+E+L + G+ K +I++ + Sbjct: 122 HQQKTEYRFMDEMLIDYSEKIVAIAGHRMEFTKIEYQIIEFLSMHPGQVFDKERIYAQVC 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 G +D + + + ++RKK+ + + +++ +GY Sbjct: 182 G-YDAEGDSRTITELVRRIRKKIADYSEKEYIETVWGIGYR 221 >gi|313900856|ref|ZP_07834346.1| transcriptional regulatory protein ResD [Clostridium sp. HGF2] gi|312954276|gb|EFR35954.1| transcriptional regulatory protein ResD [Clostridium sp. HGF2] Length = 226 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 41/225 (18%), Positives = 86/225 (38%), Gaps = 10/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ +G +E A D+ ++ Sbjct: 4 LLVVDDEERIRSMIRKYGEFEGHEIEEAVDGMDAIEKCKQAEYDLIIMDIM--MPNLDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR-----VAAIY 116 + IR Q P+I +S + F+ GVDD V KP +E++ R Sbjct: 62 SAVKEIRKDVQTPVIMLSARGEEYDRIHGFEIGVDDYVVKPFSPKELMMRVSAILKRYHG 121 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + +++ R + + + +E +L YL+ N G + + Q+ Sbjct: 122 DVNTRKKDIYTYEGLKIDFTARKVFIDDKEVEMSPKEYVLLFYLVRNEGIALTREQLIHD 181 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G +D ++ +++HI LRK L++ + + R +GY + Sbjct: 182 VWG-YDFYGDDRTLDTHIKLLRKSLQDYS--RLIITLRGVGYRFE 223 >gi|161501958|ref|YP_262771.2| DNA-binding response regulator CreB [Pseudomonas fluorescens Pf-5] Length = 226 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 52/219 (23%), Positives = 95/219 (43%), Gaps = 5/219 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A + D I +G + + Q ++ D+ ++ L Sbjct: 4 ILIVEDEAAIADTLIFALQGEGFTTTWLSLGRAALEHQQASPADLIILDIGL--PDISGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E + +R S+VP++ +S + + G DD V KP RE+ ARV AI +R+ Sbjct: 62 ETCKQLRRFSEVPVMFLSARDGEIDRVVGLEIGADDYVVKPFSPREVAARVKAILKRMVP 121 Query: 122 SNNRAETGP-IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + +G+ L R E R+L+ L+ + ++ Q+ A+ G+ Sbjct: 122 RVAPEAVAALFVIDPERVQISYRGQPLSLTRHEFRLLQCLLEQPERVFSREQLLDAL-GV 180 Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218 + E ++SHI LR KLR +P+ + R LGY Sbjct: 181 MADVGYERNIDSHIKSLRAKLRLVAAQAEPIQTHRGLGY 219 >gi|15598005|ref|NP_251499.1| two-component response regulator, CopR [Pseudomonas aeruginosa PAO1] gi|218891000|ref|YP_002439866.1| two-component response regulator, CopR [Pseudomonas aeruginosa LESB58] gi|254235792|ref|ZP_04929115.1| hypothetical protein PACG_01732 [Pseudomonas aeruginosa C3719] gi|254241263|ref|ZP_04934585.1| hypothetical protein PA2G_01957 [Pseudomonas aeruginosa 2192] gi|9948893|gb|AAG06197.1|AE004708_3 two-component response regulator, CopR [Pseudomonas aeruginosa PAO1] gi|126167723|gb|EAZ53234.1| hypothetical protein PACG_01732 [Pseudomonas aeruginosa C3719] gi|126194641|gb|EAZ58704.1| hypothetical protein PA2G_01957 [Pseudomonas aeruginosa 2192] gi|218771225|emb|CAW26990.1| two-component response regulator, CopR [Pseudomonas aeruginosa LESB58] Length = 226 Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 42/224 (18%), Positives = 96/224 (42%), Gaps = 6/224 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G +++ + E L D+ ++ L G Sbjct: 3 LLIVEDEPRIGQYLRQGLAEAGFAVDLSDDGNEGEQLALGGDYDLLILDVML--PGRDGW 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118 ++ R +R P++ ++ +++ + + G DD + KP E+LARV Sbjct: 61 QILRSVRDAGMTVPVLFLTARDAVEDRVRGLEQGADDYLVKPFAFVELLARVRTLLRRGS 120 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++ + + + R + QG+ L +E +LE L+ G+ + K+ I S ++ Sbjct: 121 QQLQETTLQLADLELDLLRRRVQRQGKRIDLTAKEFALLELLLRRSGEVLPKSLIASQVW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + + + NV+E I +LR K+ + + + R +GY ++ Sbjct: 181 DM-NFDSDTNVIEVAIRRLRAKVDDDYPQRLIHTVRGMGYVLEE 223 >gi|330875625|gb|EGH09774.1| KDP operon transcriptional regulatory protein kdpE [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 230 Score = 134 bits (338), Expect = 8e-30, Method: Composition-based stats. Identities = 42/223 (18%), Positives = 86/223 (38%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD ++ G + + + + D+ ++ L Sbjct: 7 ILVIDDEPQIRKFLRISLVSQGYKVLEAATGAEGLTQAALNKPDLLVLDLGL--PDMDGQ 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 ++ R S VP++ +S S + D+G +D V KP +E LARV Sbjct: 65 QVLSEFREWSAVPVLVLSVRASEVQKVQALDAGANDYVTKPFGIQEFLARVRALLRQVSG 124 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + GP+ V R + + L R+E +L L + G+ + + Q+ I+ Sbjct: 125 SDRPESALKFGPLTVDLAYRRVLLDDQEVALTRKEYSVLAQLARHPGRVITQQQLLKDIW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 G + + + + LR+KL + + ++ +GY + Sbjct: 185 GPTHTE-DSHYLRIVVGHLRQKLGDDPTAPRFIITEAGIGYRL 226 >gi|302537327|ref|ZP_07289669.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. C] gi|302446222|gb|EFL18038.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. C] Length = 234 Score = 134 bits (338), Expect = 8e-30, Method: Composition-based stats. Identities = 50/232 (21%), Positives = 89/232 (38%), Gaps = 19/232 (8%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQS---SAREDVSAIEAFLIGKGE 58 +L++D V A+ G + + E + V ++ L + Sbjct: 3 LLLVEDDDHVAAALSAILARHGFRVTHARNGEEALQALLPAGAKPFGVVLLDLGL--PDQ 60 Query: 59 KVLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 E+ IR + P+I ++ +++ + + G DD V KP E+LAR+ A+ RR Sbjct: 61 DGYEVCGKIRKRTSTPVIMVTARGDVRSRIHGLNMGADDYVVKPYDTGELLARIHAVARR 120 Query: 119 LKVSNNRAETGPIRVFS----------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 ++ A T + R V G PL R+E +L L G Sbjct: 121 TGATDEGAATPETAPGTVRLGPVAVELPTRRVTVNGTDVPLTRKEFDLLALLAQRPGVVF 180 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + QI S ++ +E H++ LR KL +++ R +GY + Sbjct: 181 RREQIISEVW-RTSWEGTGRTLEVHVASLRSKL---GMPALIETVRGVGYRL 228 >gi|238059125|ref|ZP_04603834.1| winged helix family two-component system transcriptional regulator [Micromonospora sp. ATCC 39149] gi|237880936|gb|EEP69764.1| winged helix family two-component system transcriptional regulator [Micromonospora sp. ATCC 39149] Length = 227 Score = 134 bits (338), Expect = 8e-30, Method: Composition-based stats. Identities = 46/224 (20%), Positives = 89/224 (39%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L+DD A + + L + D++ ++ L + Sbjct: 4 ILLVDDDAPLLRALRINLTARRYEVTTATDGTTALTLAARTPPDLAIVDLGL--PDLDGV 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + +R +++P+I +S + +D D+G DD + KP E+LAR+ A RR Sbjct: 62 TVVEGLRGWTRIPIIVLSARDTESAKVDALDAGADDYITKPFGMNELLARIRAALRRATP 121 Query: 122 SNNRAETGPIRVFSD----GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 ++ + F+ R G L E +LE L + GK V+ Q+ + Sbjct: 122 ADTGPAVVAVGDFTIDLAAKRLTTSTGHDVRLTPTEWHLLEILARHPGKLVSHRQLLHEV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 +G E N + H + LR+K+ + + ++ +GY + Sbjct: 182 WG-PAYDTETNYLRVHFANLRRKIEPDPTRPRYLVTEPGIGYRL 224 >gi|227874637|ref|ZP_03992800.1| possible response regulator [Mobiluncus mulieris ATCC 35243] gi|306817923|ref|ZP_07451661.1| response regulator [Mobiluncus mulieris ATCC 35239] gi|227844846|gb|EEJ54992.1| possible response regulator [Mobiluncus mulieris ATCC 35243] gi|304649266|gb|EFM46553.1| response regulator [Mobiluncus mulieris ATCC 35239] Length = 267 Score = 134 bits (338), Expect = 8e-30, Method: Composition-based stats. Identities = 43/224 (19%), Positives = 86/224 (38%), Gaps = 10/224 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L++D + + G +G + + LQ D+ ++ L L+ Sbjct: 47 LLVEDDPAIAEPLARALGREGYEVSAQTTGGAA--LQQVGGCDIVILDLGL--PDMDGLD 102 Query: 63 LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118 + R IRA +P++ ++ + DSG DD V KP E + + Sbjct: 103 VARTIRAQGITIPILILTARTGEVDMVVGLDSGADDYVTKPFRLGELLARVRALLRRAGG 162 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + E +RV L +E +L L+ + G V++ Q+ ++ Sbjct: 163 EVTEDEIIECQDVRVEVAAHRAFQGERELQLTAKEFDLLRVLIRDAGSVVSREQVMREVW 222 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221 G D + ++ H+S LR+KL + + + R +G+ + Sbjct: 223 G-SDPSGSTKTLDMHVSWLRRKLGDDANSPRYITTVRGMGFRFE 265 >gi|254517943|ref|ZP_05129999.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Clostridium sp. 7_2_43FAA] gi|226911692|gb|EEH96893.1| alkaline phosphatase synthesis transcriptional regulatory protein phoP [Clostridium sp. 7_2_43FAA] Length = 227 Score = 134 bits (338), Expect = 8e-30, Method: Composition-based stats. Identities = 42/224 (18%), Positives = 86/224 (38%), Gaps = 9/224 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + D +G SL+ ++ D+ ++ L + Sbjct: 6 LIVEDDKSINDILFHTLKAEGYLPHSVFSLKEANDFLNTTLPDLILLDLNL--PDGSGFD 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL------ARVAAIY 116 + I A +P+I ++ + + + G DD + KP H +E+ R Sbjct: 64 FCKDINAKYTIPIIILTAKNDVFDKVLGLELGADDYITKPFHIKEVTSRIKAVFRRIEKS 123 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 N I++ + R EV L +E +LE+ + NR K ++ Q+ Sbjct: 124 ASKDNKNFIKINSNIKINFNNRTVLKNDEVIQLKPKEYELLEFFVQNRNKVFSREQLIDN 183 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I+ F + V+ HI ++R KL +++ +GY + Sbjct: 184 IW-EFSYDGDIRTVDIHIRRIRSKLDTNGHPSVIETVFGVGYMM 226 >gi|74317767|ref|YP_315507.1| two component heavy metal response transcriptional regulator [Thiobacillus denitrificans ATCC 25259] gi|74057262|gb|AAZ97702.1| Two component Heavy metal response Transcriptional regulator, Winged helix family [Thiobacillus denitrificans ATCC 25259] Length = 242 Score = 134 bits (338), Expect = 8e-30, Method: Composition-based stats. Identities = 36/223 (16%), Positives = 87/223 (39%), Gaps = 6/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + G + L S D+ ++ L G Sbjct: 15 ILIVEDEPKTGAYLRQGLTEAGFVTDLARDGWDGLELAKSGHYDLMILDVML--PGLDGW 72 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA--AIYRR 118 ++ +R P++ ++ ++ + + G DD + KP E+LARV + Sbjct: 73 QVLEGVRRAGIGTPVLFLTARDRVEDRVKGLELGADDYLVKPFAFAELLARVHSLMRRGQ 132 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + + + + R G L +E +LE + +G+ + ++ I S ++ Sbjct: 133 AALESAVLKAADLELDLLRRRATRAGRRIDLTAKEFALLELFLRRKGEVLPRSLIASQVW 192 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + + NV++ + +LR K+ + + R +GY ++ Sbjct: 193 DM-NFDSDTNVIDVAVRRLRVKIDEGFDAKLIHTVRGMGYVLE 234 >gi|66045272|ref|YP_235113.1| response regulator receiver:transcriptional regulatory protein, C-terminal [Pseudomonas syringae pv. syringae B728a] gi|63255979|gb|AAY37075.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Pseudomonas syringae pv. syringae B728a] Length = 259 Score = 134 bits (338), Expect = 8e-30, Method: Composition-based stats. Identities = 48/225 (21%), Positives = 92/225 (40%), Gaps = 9/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD +++ ++ G + DV ++ L GE L Sbjct: 33 LIVDDDVAIRELLCDYLTRFNINARGVTDGTQMRQALTDETFDVVVLDLML--PGEDGLS 90 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R +R+ S +P++ ++ + + G DD + KP RE++AR+ I RR++ Sbjct: 91 LCRWLRSTSDIPILMLTARCEPTDRIIGLELGADDYMAKPFEPRELVARIQTILRRVRDE 150 Query: 123 NNRAETGPIRVFSD-----GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + T + G V PL E R+L + + +++ Q+ A Sbjct: 151 RSDQRTTIRFDAWRLNSVLRQLTAADGLVVPLSNAEFRLLRVFLERPHRVLSREQLLDAA 210 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 G EA + ++ +S+LR+KL + + + R GY D Sbjct: 211 RGRSIEAFD-RSIDLLVSRLRQKLGDDPKNPQLIKTVRGEGYLFD 254 >gi|260587571|ref|ZP_05853484.1| regulatory protein VanR [Blautia hansenii DSM 20583] gi|331084554|ref|ZP_08333654.1| hypothetical protein HMPREF0992_02578 [Lachnospiraceae bacterium 6_1_63FAA] gi|260541836|gb|EEX22405.1| regulatory protein VanR [Blautia hansenii DSM 20583] gi|330401104|gb|EGG80698.1| hypothetical protein HMPREF0992_02578 [Lachnospiraceae bacterium 6_1_63FAA] Length = 237 Score = 134 bits (338), Expect = 8e-30, Method: Composition-based stats. Identities = 37/234 (15%), Positives = 82/234 (35%), Gaps = 17/234 (7%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D +++G + + ++ ++ + Sbjct: 6 ILIVEDDKDIREGVAIYLKSQSYEVFMAADGIEGLEVLEKEEIHLAIVDIM--MPRMDGI 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + +R P+I +S + + G DD V KP E++ARV + RR + Sbjct: 64 TMTIKLREKHDFPVIMLSAKSEEVDKIMGLNIGADDYVTKPFTPMELMARVNSQMRRYRK 123 Query: 122 SN------------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVA 169 G + V + + V + E +IL L+ N G+ + Sbjct: 124 FMEKLQAKESERTDTIYTIGGLEVNENTFEVRVDDTPVKMTPMEFKILLLLIKNPGRVFS 183 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 +I+ ++ + A+ V H+ +R+K+ N + +GY I+ Sbjct: 184 ADEIYERVWN--ERAINTETVMVHVRNIREKIEINPKEPKYLKVVWGVGYKIEK 235 >gi|71066375|ref|YP_265102.1| two component transcriptional regulator [Psychrobacter arcticus 273-4] gi|71039360|gb|AAZ19668.1| two component transcriptional regulator, winged helix family [Psychrobacter arcticus 273-4] Length = 240 Score = 134 bits (338), Expect = 8e-30, Method: Composition-based stats. Identities = 37/231 (16%), Positives = 87/231 (37%), Gaps = 12/231 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D + + + + + L ++ D+ + L+ + Sbjct: 5 ILLIEDDPDLAELISDYLTMNYYDVHHAGLGQEGLDLLNTKERDIDLVVLDLMLPDMDGM 64 Query: 62 ELPRII-----RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LA 110 ++ + I ++VP+I ++ + + G DD + KP RE+ + Sbjct: 65 QVCQKIRGNKNNMTNKVPIIMLTAKGDTTDRVLGLEMGADDYIAKPFEPRELLARIRAVI 124 Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 R + ++ G + VF D + + L + ++L Y + GK + + Sbjct: 125 RRHEQPNQADSQSDSLTFGRLSVFPDSHEVTIDDLPVRLTTHQFQLLHYFATHSGKVLNR 184 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 Q++ A+ + ++ HIS+LR + + + + R +GY Sbjct: 185 EQLWQAMPNDDSSDNIDRAIDVHISRLRALIEDNPRQPKRIITVRGVGYQF 235 >gi|330505552|ref|YP_004382421.1| two-component response regulator KdpE [Pseudomonas mendocina NK-01] gi|328919837|gb|AEB60668.1| two-component response regulator KdpE [Pseudomonas mendocina NK-01] Length = 230 Score = 134 bits (338), Expect = 8e-30, Method: Composition-based stats. Identities = 46/223 (20%), Positives = 87/223 (39%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LIDD A ++ + + E + DV ++ L Sbjct: 7 ILLIDDEAQIRKFLRIALSAQDYRVLEAVNGEDGLAQAALHNPDVVVLDLGL--PDLDGQ 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 ++ R +R SQVP++ +S S + D G +D V KP +E LARV + Sbjct: 65 QVLRGLREWSQVPVLVLSVRASEGEKVLALDGGANDYVTKPFGIQEFLARVRVLLRQGQG 124 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + G + + R ++G L +E +L L + G+ V + Q+ I+ Sbjct: 125 REALPASIACGALSIDLAYRRVSLEGAEIALTPKEYAVLALLAQHLGRVVTQQQLLRDIW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 G + + + + LR+KL + + ++ +GY + Sbjct: 185 GPSH-VGDSHYLRVVVGHLRQKLGDDPAAPRYLITEAGVGYRL 226 >gi|310827010|ref|YP_003959367.1| two component transcriptional regulator [Eubacterium limosum KIST612] gi|308738744|gb|ADO36404.1| two component transcriptional regulator [Eubacterium limosum KIST612] Length = 230 Score = 134 bits (338), Expect = 8e-30, Method: Composition-based stats. Identities = 49/227 (21%), Positives = 90/227 (39%), Gaps = 10/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A + L + G + S + + D+ ++ L G Sbjct: 6 ILIVEDDADINSLLEKLLTNAGYHVRPAFSGSEGKMCLEQYQYDLVLLDLML--PGVTGE 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH------HREILARVAAI 115 L IR S VP+I IS S+ +D G DD + KP E R A Sbjct: 64 ALVAQIRRSSTVPIIIISAKASVADRIDLLKLGADDFICKPFDVGEVLARVEAQLRRAVA 123 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + S +G + + +D + ++ + L RE +IL LM++ K + +F+ Sbjct: 124 FSEAGGSVKILTSGDLVLDADSMEVRLKDQPVSLTVREFKILHLLMSHPKKVFTRENLFT 183 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 ++ E+N V HIS +R KL + + +G+ ++ Sbjct: 184 QVW-EDAFLGEDNTVNVHISNIRSKLAKIDPDTSYIKTVWGIGFKME 229 >gi|126665480|ref|ZP_01736462.1| response regulator DrrA [Marinobacter sp. ELB17] gi|126630108|gb|EBA00724.1| response regulator DrrA [Marinobacter sp. ELB17] Length = 233 Score = 134 bits (338), Expect = 8e-30, Method: Composition-based stats. Identities = 49/229 (21%), Positives = 95/229 (41%), Gaps = 14/229 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++I+D + + D G++ N + D+ ++ L G L Sbjct: 6 LIIEDNPAIAELVSMQVSDLGMAPVLANRGDDGLARFRQGGIDLVVLDLML--PGLDGLA 63 Query: 63 LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118 + R IR A VP++ ++ + + + G DD + KP E+ AR+ A++RR Sbjct: 64 VCREIRTAPDYVPVLMLTAKSTELDRVLGLEMGADDYLTKPFSVAELGARIKALFRRVDA 123 Query: 119 ------LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 N +R+ R V L RE +L + ++RG+ ++ Q Sbjct: 124 LSARATDAPENREIAVDGLRIDPLRRRVFVNNAEVELTAREFDLLWHFASHRGRVFSRAQ 183 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + A++G ++ E+ V +HI++LR K+ + V + +GY Sbjct: 184 LLDAVWG-YNHQGYEHTVNTHINRLRNKIETDPAEPRYVQTVWGVGYRF 231 >gi|89899389|ref|YP_521860.1| two component transcriptional regulator [Rhodoferax ferrireducens T118] gi|89344126|gb|ABD68329.1| two component transcriptional regulator, winged helix family [Rhodoferax ferrireducens T118] Length = 240 Score = 134 bits (338), Expect = 8e-30, Method: Composition-based stats. Identities = 42/223 (18%), Positives = 87/223 (39%), Gaps = 9/223 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + + +G + + DV ++ L GE L Sbjct: 8 LIVEDEPAIAELIAVNLRHNGFRPTWAMDSASAQRELDAVLPDVILLDWML--PGESGLA 65 Query: 63 LPRIIRAHSQ---VPLIGISDYPSLQTTLDFFDSGVDDVV--NKPIHHREILARVAAIYR 117 L + RAH + +P+I ++ + D+G DD + R R Sbjct: 66 LAKRWRAHPRTKAIPIIMLTARGDETDRVAGLDAGADDYIAKPFSTKELLARMRAVLRRR 125 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + G + + + G+ L E ++L+YLM++ + ++ Q+ + Sbjct: 126 APEQVGGVVSVGALSLDTATYRVTFAGQPLKLGPTEFKLLQYLMSHAERVHSRGQLLDKV 185 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G +EE V+ H+ +LR+ L + G V++ R GY + Sbjct: 186 WGDH-VFIEERTVDVHVKRLREALGAQAG-QMVETVRGAGYRL 226 >gi|300857169|ref|YP_003782153.1| putative two-component response regulator [Clostridium ljungdahlii DSM 13528] gi|300437284|gb|ADK17051.1| predicted two-component response regulator [Clostridium ljungdahlii DSM 13528] Length = 227 Score = 134 bits (338), Expect = 8e-30, Method: Composition-based stats. Identities = 47/222 (21%), Positives = 95/222 (42%), Gaps = 7/222 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D V + A +G + + L S + ++ L + E Sbjct: 5 LIVEDEEKVSNIQKAYLEKEGYEVYTSTTGLKALELFDSIEFSLIILDLML--PDIQGEE 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRRL 119 + +IIR S V + ++ +L+ ++ ++G D+ + KP RE + + Sbjct: 63 ICKIIRDKSDVHIFMVTAKSALEDRIEGLNTGADEYLVKPFSPRELVARVNSLFRRLGAN 122 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +S + G I+++ D R +V+G+ L E IL L N+GK + + Q+ ++G Sbjct: 123 NISVLSLDNGNIQIYKDSRIIKVKGQEISLTPNEFDILYVLAINKGKVLTREQLIDRVFG 182 Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 + D + V+ HI +RKK+ + + LGY Sbjct: 183 M-DFEGFDRTVDVHIKNIRKKIEEDSKSPKYILTVTRLGYKF 223 >gi|242241118|ref|YP_002989299.1| two component heavy metal response transcriptional regulator, winged helix family [Dickeya dadantii Ech703] gi|242133175|gb|ACS87477.1| two component heavy metal response transcriptional regulator, winged helix family [Dickeya dadantii Ech703] Length = 223 Score = 134 bits (338), Expect = 8e-30, Method: Composition-based stats. Identities = 43/221 (19%), Positives = 92/221 (41%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D D + G +++ S + D ++ L G Sbjct: 3 ILVVEDDVSTGDYLKKGLTEAGYAVDLARSGTEGLFNALEHGYDAIILDVML--PGLSGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120 +L ++R S VP++ ++ L + + G DD + KP E++ R+ + R + Sbjct: 61 QLIEMLRKKSDVPVLFLTARDQLHDRIRGLELGADDYLIKPFSFTELVLRIRTLLRRGVV 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + +R+ R Q V PL +E +L L+ G+ +++T I S ++ + Sbjct: 121 READHYAVADLRLDVLRRKATRQEVVIPLTNKEFMLLHLLVRREGEVLSRTLIASQVWDM 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + NVV+ + +LR K+ + + R +GY + Sbjct: 181 -NFDSDTNVVDVAVKRLRAKIDKPFDIKLIHTVRGIGYVCE 220 >gi|228995978|ref|ZP_04155634.1| Two-component response regulator [Bacillus mycoides Rock3-17] gi|229003595|ref|ZP_04161411.1| Two-component response regulator [Bacillus mycoides Rock1-4] gi|228757637|gb|EEM06866.1| Two-component response regulator [Bacillus mycoides Rock1-4] gi|228763751|gb|EEM12642.1| Two-component response regulator [Bacillus mycoides Rock3-17] Length = 230 Score = 134 bits (338), Expect = 8e-30, Method: Composition-based stats. Identities = 42/220 (19%), Positives = 75/220 (34%), Gaps = 6/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L+DD + + G + S + + ++ Sbjct: 4 ILLVDDEPRMLELLTLYLTPRGYNCVCATSGQEAISYIENQSFKFVLLDIM--MPKMDGW 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E IR+ S VP+I ++ + G DD + KP H E+ R Sbjct: 62 ETCNRIRSFSNVPIIMVTARDQTIDVIQGLKIGSDDYITKPFHEGEL-LARIEAVLRRSN 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + I V + L E +L + + +++ Q+ I+GL Sbjct: 121 QHEQLRYKGILWDEAKHFITVYEQELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGL- 179 Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219 D E+ V+SHI LR KLR + + + +GY Sbjct: 180 DTNTEDRTVDSHIRNLRDKLRKNNFPIDEHLKTVYGVGYR 219 >gi|229161599|ref|ZP_04289579.1| Two-component response regulator vanRB [Bacillus cereus R309803] gi|228621844|gb|EEK78690.1| Two-component response regulator vanRB [Bacillus cereus R309803] Length = 214 Score = 134 bits (338), Expect = 8e-30, Method: Composition-based stats. Identities = 47/220 (21%), Positives = 89/220 (40%), Gaps = 9/220 (4%) Query: 5 IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64 ++D +++ ++ + + D+ ++ E+ Sbjct: 2 VEDDQEIQELIKQFLMTQQYTVVVASDGLEGMTQFNKQSFDLILLDVM--MPNLNGFEVS 59 Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRLKVS 122 ++IR+ S VP+I ++ + + FD G+DD + KP ++ RV A K Sbjct: 60 KMIRSQSNVPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSYDKNV 119 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 NN +R+ D V L +E IL+ L N K + + I ++G +D Sbjct: 120 NNHLIFKEVRIDVDAYRVYVNDVEIILTTKEFEILQLLFQNERKVLTRENIVEKVWG-YD 178 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 E ++++HI LRKKL + + + +GY ID Sbjct: 179 YFGETRIIDTHIKNLRKKL----AIPYIKTIKGIGYKIDE 214 >gi|225568320|ref|ZP_03777345.1| hypothetical protein CLOHYLEM_04395 [Clostridium hylemonae DSM 15053] gi|225162849|gb|EEG75468.1| hypothetical protein CLOHYLEM_04395 [Clostridium hylemonae DSM 15053] Length = 235 Score = 134 bits (338), Expect = 8e-30, Method: Composition-based stats. Identities = 43/231 (18%), Positives = 87/231 (37%), Gaps = 15/231 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D +++G G + + ++ ++ + Sbjct: 7 LIVEDDKEIREGVEIYLKSQGYEVYQAADGREGLEVIEREDIHLAIVDVM--MPRMDGIT 64 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + +R P+I +S + + G DD V KP E+LARV + RR + Sbjct: 65 MVVRLREKHDFPVIMLSAKSEEVDKIMGLNIGADDYVTKPFTPMELLARVNSQLRRYRKF 124 Query: 123 ----------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 N G + + D + V GE L E +IL LM + G+ + + Sbjct: 125 AEKLNEKEASANVHVIGGLEINEDTVEAAVDGEPVKLTPIEYKILLLLMKSPGRVFSAEE 184 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 I+ ++ + A+ + + HI +R+K+ N + +GY I+ Sbjct: 185 IYERVWN--ERAITTDTIMVHIRNIREKIEINPKEPKYLKVVWGVGYKIEK 233 >gi|190574616|ref|YP_001972461.1| putative two-component response regulator transcriptional regulator [Stenotrophomonas maltophilia K279a] gi|190012538|emb|CAQ46166.1| putative two-component response regulator transcriptional regulatory protein [Stenotrophomonas maltophilia K279a] Length = 232 Score = 134 bits (338), Expect = 8e-30, Method: Composition-based stats. Identities = 42/223 (18%), Positives = 92/223 (41%), Gaps = 6/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G ++ + L S + ++ L G Sbjct: 3 LLIVEDEPKTGNYLRQGLIEAGYVVDLACNGVDGLHLAGSGEYQLVILDVML--PGLDGW 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118 + +R P++ ++ S+ + + G DD + KP E+LARV + Sbjct: 61 NVLSRLREAGWQVPVLFLTARSSIADRVQGLELGADDYLAKPFAFAELLARVRTLLRRGQ 120 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + R + V + R E G+ L ++E +LE L RG+ + ++ I S ++ Sbjct: 121 AQPQAERIVIADLVVDTLRRRVERGGQRITLSQKEYTLLELLARRRGEVLPRSLIASQVW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + + NV++ I +LR K+ + + + R +GY ++ Sbjct: 181 DM-NFDSDTNVIDVAIRRLRAKIDDDFDAKLIVTVRGMGYVLE 222 >gi|160938781|ref|ZP_02086133.1| hypothetical protein CLOBOL_03676 [Clostridium bolteae ATCC BAA-613] gi|158438480|gb|EDP16239.1| hypothetical protein CLOBOL_03676 [Clostridium bolteae ATCC BAA-613] Length = 224 Score = 134 bits (338), Expect = 8e-30, Method: Composition-based stats. Identities = 47/220 (21%), Positives = 91/220 (41%), Gaps = 6/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ +D + A+ + G L + D+ ++ G Sbjct: 4 ILVAEDDKNTRRLMEAVLKEHGYHPILACDGLEALKLLDTHHVDLVILDIM--MPGMDGY 61 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119 E R +RA P++ ++ + F G DD + KP+ E++ R+ A + R Sbjct: 62 EFTRQLRATDYTLPILMVTAKQLPEDKRKGFIVGTDDYMTKPVDEEEMILRIRALLRRAQ 121 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 V+ R + + D E LPR+E +L L++ GK + Q+ I+G Sbjct: 122 IVNERRITIADVCLDYDSLTVSRGDESQTLPRKEFYLLYKLLSYPGKIFTRIQLMDEIWG 181 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 + + ++N + HI++LRK+ + F +++ R LGY Sbjct: 182 M-ESQSDDNTINVHINRLRKRFEDYPEFT-IETIRGLGYK 219 >gi|70729143|ref|YP_258879.1| OmpR family DNA-binding response regulator [Pseudomonas fluorescens Pf-5] gi|68343442|gb|AAY91048.1| DNA-binding response regulator, OmpR family [Pseudomonas fluorescens Pf-5] Length = 254 Score = 134 bits (338), Expect = 8e-30, Method: Composition-based stats. Identities = 48/225 (21%), Positives = 90/225 (40%), Gaps = 9/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD +++ I + G + DV ++ L GE L Sbjct: 28 LIVDDDVPIRELLIDYLARFNIHASGVTDGAAMRQALQAEHFDVVVLDLML--PGEDGLS 85 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R +R S +P++ ++ + + G DD + KP RE++AR+ I RR++ Sbjct: 86 LCRWLRTESDIPILMLTARCEPTDRIIGLELGADDYMAKPFEPRELVARIQTILRRVRDD 145 Query: 123 NNRAETGPIRVFSD-----GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + G V PL E R+L + + +++ Q+ A Sbjct: 146 RSEQRANIRFDNWRLNSVLRQLISADGLVVPLSNAEFRLLWVFIERPRRVLSREQLLDAA 205 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 G EA + ++ +S+LR+KL + + + R GY D Sbjct: 206 RGRSIEAFD-RSIDLLVSRLRQKLGDDPKSPQLIKTVRGEGYLFD 249 >gi|15596996|ref|NP_250490.1| two-component response regulator, ParR [Pseudomonas aeruginosa PAO1] gi|107101231|ref|ZP_01365149.1| hypothetical protein PaerPA_01002264 [Pseudomonas aeruginosa PACS2] gi|218892248|ref|YP_002441115.1| putative two-component response regulator [Pseudomonas aeruginosa LESB58] gi|254234893|ref|ZP_04928216.1| hypothetical protein PACG_00768 [Pseudomonas aeruginosa C3719] gi|254240192|ref|ZP_04933514.1| hypothetical protein PA2G_00834 [Pseudomonas aeruginosa 2192] gi|9947782|gb|AAG05188.1|AE004606_2 two-component response regulator, ParR [Pseudomonas aeruginosa PAO1] gi|126166824|gb|EAZ52335.1| hypothetical protein PACG_00768 [Pseudomonas aeruginosa C3719] gi|126193570|gb|EAZ57633.1| hypothetical protein PA2G_00834 [Pseudomonas aeruginosa 2192] gi|218772474|emb|CAW28256.1| probable two-component response regulator [Pseudomonas aeruginosa LESB58] Length = 235 Score = 134 bits (338), Expect = 8e-30, Method: Composition-based stats. Identities = 44/223 (19%), Positives = 88/223 (39%), Gaps = 7/223 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L++D + + G + + + + V ++ L G+ L+ Sbjct: 10 LLVEDDQKLARLIASFLSQHGFEVRQVHRGDAAFAAFLDFKPQVVVLDLML--PGQNGLQ 67 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR---EILARVAAIYRRL 119 + R IR + +P++ ++ + +SG DD V KPI L + + L Sbjct: 68 VCREIRRVANLPILILTAQEDDLDHILGLESGADDYVIKPIEPPVLLARLRALMRRHAPL 127 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S G + + R+ E++G L E +L L + G+ +++ +I + I G Sbjct: 128 PASPESLTFGKLNIDRRRREAELEGLGIELTTMEFELLWLLASQAGEILSRDEILNQIRG 187 Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 + V+ ISKLR KL++ + + GY + Sbjct: 188 IG-FDGLNRSVDVCISKLRNKLKDNPREPVRIKTVWGKGYLFN 229 >gi|322516504|ref|ZP_08069422.1| DNA-binding response regulator [Streptococcus vestibularis ATCC 49124] gi|322124973|gb|EFX96387.1| DNA-binding response regulator [Streptococcus vestibularis ATCC 49124] Length = 226 Score = 134 bits (338), Expect = 8e-30, Method: Composition-based stats. Identities = 39/220 (17%), Positives = 85/220 (38%), Gaps = 6/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D +++ + G + + + ++ L Sbjct: 4 ILLVEDDEVIRQQVKKILEQWGYEVVLVEDFMEVLSIFVKEEPHLVLMDIGLPL--FNGY 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR---EILARVAAIYRR 118 + IR S+VP++ +S + + G DD V KP + + Sbjct: 62 HWCQEIRKVSKVPIMFLSSRDQAMDIVMAINMGGDDFVTKPFDQNVLLAKIQGLLRRSYE 121 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + E + + D QGEV L + E +IL+ L G V++ + ++ Sbjct: 122 FGKDQSLLEYRGVILNLKAMDLVYQGEVVSLTKNEFQILQVLFERSGNIVSREDLMKELW 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 D +++N + ++++LRKKL + +++K+ +GY Sbjct: 182 -NSDFFIDDNTLSVNVARLRKKLEAVGLKEFIETKKGVGY 220 >gi|317046730|ref|YP_004114378.1| winged helix family two component transcriptional regulator [Pantoea sp. At-9b] gi|316948347|gb|ADU67822.1| two component transcriptional regulator, winged helix family [Pantoea sp. At-9b] Length = 220 Score = 134 bits (338), Expect = 8e-30, Method: Composition-based stats. Identities = 47/223 (21%), Positives = 91/223 (40%), Gaps = 9/223 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D AL++ G G +++ S L S + + ++ L Sbjct: 3 LLIVEDDALLQSGLAQALSAQGYAVDCAASAAESNALLRSGQYSLIVLDLGL--PDRDGA 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L R R P++ ++ +L+ +D D+G DD + KP E+ AR A+ RR + Sbjct: 61 TLLRQWRRDGINVPVLILTARDALEDRVDGLDAGADDYLVKPFALVELQARARALIRRYQ 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGE-VFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++ + + + +E +L L+ G+ V + + +Y Sbjct: 121 GHSDNLLQQGDLTLNLSSQQVLLENLPLEITPKEFALLTRLLMRVGQNVHRETLQQDLYS 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 D N +E HI LR+KL G D + + R +GY ++ Sbjct: 181 WND-DPGSNTLEVHIHNLRRKL----GKDRIKTVRGVGYRLEV 218 >gi|17988319|ref|NP_540953.1| transcriptional regulatory protein chvI [Brucella melitensis bv. 1 str. 16M] gi|23502938|ref|NP_699065.1| DNA-binding response regulator BvrR [Brucella suis 1330] gi|62290933|ref|YP_222726.1| DNA-binding response regulator BvrR [Brucella abortus bv. 1 str. 9-941] gi|82700844|ref|YP_415418.1| response regulator receiver [Brucella melitensis biovar Abortus 2308] gi|148560408|ref|YP_001259894.1| putative DNA-binding response regulator BvrR [Brucella ovis ATCC 25840] gi|161620004|ref|YP_001593891.1| transcriptional regulatory protein chvI [Brucella canis ATCC 23365] gi|163844109|ref|YP_001628513.1| transcriptional regulatory protein chvI [Brucella suis ATCC 23445] gi|189025147|ref|YP_001935915.1| transcriptional regulator [Brucella abortus S19] gi|225626471|ref|ZP_03784510.1| Transcriptional regulatory protein chvI [Brucella ceti str. Cudo] gi|225853520|ref|YP_002733753.1| transcriptional regulator ChvI [Brucella melitensis ATCC 23457] gi|237816441|ref|ZP_04595434.1| Transcriptional regulatory protein chvI [Brucella abortus str. 2308 A] gi|254690226|ref|ZP_05153480.1| Transcriptional regulatory protein chvI [Brucella abortus bv. 6 str. 870] gi|254694714|ref|ZP_05156542.1| Transcriptional regulatory protein chvI [Brucella abortus bv. 3 str. Tulya] gi|254696341|ref|ZP_05158169.1| Transcriptional regulatory protein chvI [Brucella abortus bv. 2 str. 86/8/59] gi|254700722|ref|ZP_05162550.1| Transcriptional regulatory protein chvI [Brucella suis bv. 5 str. 513] gi|254705094|ref|ZP_05166922.1| Transcriptional regulatory protein chvI [Brucella suis bv. 3 str. 686] gi|254707389|ref|ZP_05169217.1| Transcriptional regulatory protein chvI [Brucella pinnipedialis M163/99/10] gi|254709068|ref|ZP_05170879.1| Transcriptional regulatory protein chvI [Brucella pinnipedialis B2/94] gi|254718148|ref|ZP_05179959.1| Transcriptional regulatory protein chvI [Brucella sp. 83/13] gi|254731257|ref|ZP_05189835.1| Transcriptional regulatory protein chvI [Brucella abortus bv. 4 str. 292] gi|256030593|ref|ZP_05444207.1| Transcriptional regulatory protein chvI [Brucella pinnipedialis M292/94/1] gi|256045695|ref|ZP_05448573.1| Transcriptional regulatory protein chvI [Brucella melitensis bv. 1 str. Rev.1] gi|256158589|ref|ZP_05456479.1| Transcriptional regulatory protein chvI [Brucella ceti M490/95/1] gi|256254000|ref|ZP_05459536.1| Transcriptional regulatory protein chvI [Brucella ceti B1/94] gi|256258479|ref|ZP_05464015.1| Transcriptional regulatory protein chvI [Brucella abortus bv. 9 str. C68] gi|256262996|ref|ZP_05465528.1| transcriptional regulatory protein [Brucella melitensis bv. 2 str. 63/9] gi|260169499|ref|ZP_05756310.1| Transcriptional regulatory protein chvI [Brucella sp. F5/99] gi|260546196|ref|ZP_05821936.1| transcriptional regulatory protein [Brucella abortus NCTC 8038] gi|260562995|ref|ZP_05833481.1| transcriptional regulatory protein [Brucella melitensis bv. 1 str. 16M] gi|260567438|ref|ZP_05837908.1| transcriptional regulatory protein [Brucella suis bv. 4 str. 40] gi|260755765|ref|ZP_05868113.1| two component transcriptional regulator [Brucella abortus bv. 6 str. 870] gi|260758988|ref|ZP_05871336.1| two component transcriptional regulator [Brucella abortus bv. 4 str. 292] gi|260760712|ref|ZP_05873055.1| two component transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59] gi|260884789|ref|ZP_05896403.1| regulatory protein BvrR [Brucella abortus bv. 9 str. C68] gi|261215041|ref|ZP_05929322.1| two component transcriptional regulator [Brucella abortus bv. 3 str. Tulya] gi|261221140|ref|ZP_05935421.1| regulatory protein BvrR [Brucella ceti B1/94] gi|261314875|ref|ZP_05954072.1| regulatory protein BvrR [Brucella pinnipedialis M163/99/10] gi|261316567|ref|ZP_05955764.1| regulatory protein BvrR [Brucella pinnipedialis B2/94] gi|261751232|ref|ZP_05994941.1| regulatory protein BvrR [Brucella suis bv. 5 str. 513] gi|261755797|ref|ZP_05999506.1| regulatory protein BvrR [Brucella suis bv. 3 str. 686] gi|261759025|ref|ZP_06002734.1| transcriptional regulatory protein [Brucella sp. F5/99] gi|265983104|ref|ZP_06095839.1| regulatory protein BvrR [Brucella sp. 83/13] gi|265987640|ref|ZP_06100197.1| regulatory protein BvrR [Brucella pinnipedialis M292/94/1] gi|265992115|ref|ZP_06104672.1| regulatory protein BvrR [Brucella melitensis bv. 1 str. Rev.1] gi|265997100|ref|ZP_06109657.1| regulatory protein BvrR [Brucella ceti M490/95/1] gi|294851319|ref|ZP_06791992.1| two-component system protein [Brucella sp. NVSL 07-0026] gi|297247318|ref|ZP_06931036.1| two-component system, OmpR family, response regulator [Brucella abortus bv. 5 str. B3196] gi|306837662|ref|ZP_07470531.1| two component transcriptional regulator [Brucella sp. NF 2653] gi|306842796|ref|ZP_07475437.1| two component transcriptional regulator [Brucella sp. BO2] gi|306843509|ref|ZP_07476110.1| two component transcriptional regulator [Brucella sp. BO1] gi|17984093|gb|AAL53217.1| transcriptional regulatory protein chvi [Brucella melitensis bv. 1 str. 16M] gi|23348972|gb|AAN30980.1| DNA-binding response regulator BvrR, putative [Brucella suis 1330] gi|62197065|gb|AAX75365.1| BvrR, DNA-binding response regulator [Brucella abortus bv. 1 str. 9-941] gi|82616945|emb|CAJ12048.1| Response regulator receiver:Transcriptional regulatory protein, C terminal [Brucella melitensis biovar Abortus 2308] gi|148371665|gb|ABQ61644.1| putative DNA-binding response regulator BvrR [Brucella ovis ATCC 25840] gi|161336815|gb|ABX63120.1| Transcriptional regulatory protein chvI [Brucella canis ATCC 23365] gi|163674832|gb|ABY38943.1| Transcriptional regulatory protein chvI [Brucella suis ATCC 23445] gi|189020719|gb|ACD73441.1| Transcriptional regulatory protein [Brucella abortus S19] gi|225618128|gb|EEH15171.1| Transcriptional regulatory protein chvI [Brucella ceti str. Cudo] gi|225641885|gb|ACO01799.1| Transcriptional regulatory protein chvI [Brucella melitensis ATCC 23457] gi|237788508|gb|EEP62723.1| Transcriptional regulatory protein chvI [Brucella abortus str. 2308 A] gi|260096303|gb|EEW80179.1| transcriptional regulatory protein [Brucella abortus NCTC 8038] gi|260153011|gb|EEW88103.1| transcriptional regulatory protein [Brucella melitensis bv. 1 str. 16M] gi|260156956|gb|EEW92036.1| transcriptional regulatory protein [Brucella suis bv. 4 str. 40] gi|260669306|gb|EEX56246.1| two component transcriptional regulator [Brucella abortus bv. 4 str. 292] gi|260671144|gb|EEX57965.1| two component transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59] gi|260675873|gb|EEX62694.1| two component transcriptional regulator [Brucella abortus bv. 6 str. 870] gi|260874317|gb|EEX81386.1| regulatory protein BvrR [Brucella abortus bv. 9 str. C68] gi|260916648|gb|EEX83509.1| two component transcriptional regulator [Brucella abortus bv. 3 str. Tulya] gi|260919724|gb|EEX86377.1| regulatory protein BvrR [Brucella ceti B1/94] gi|261295790|gb|EEX99286.1| regulatory protein BvrR [Brucella pinnipedialis B2/94] gi|261303901|gb|EEY07398.1| regulatory protein BvrR [Brucella pinnipedialis M163/99/10] gi|261739009|gb|EEY27005.1| transcriptional regulatory protein [Brucella sp. F5/99] gi|261740985|gb|EEY28911.1| regulatory protein BvrR [Brucella suis bv. 5 str. 513] gi|261745550|gb|EEY33476.1| regulatory protein BvrR [Brucella suis bv. 3 str. 686] gi|262551568|gb|EEZ07558.1| regulatory protein BvrR [Brucella ceti M490/95/1] gi|263003181|gb|EEZ15474.1| regulatory protein BvrR [Brucella melitensis bv. 1 str. Rev.1] gi|263092870|gb|EEZ17045.1| transcriptional regulatory protein [Brucella melitensis bv. 2 str. 63/9] gi|264659837|gb|EEZ30098.1| regulatory protein BvrR [Brucella pinnipedialis M292/94/1] gi|264661696|gb|EEZ31957.1| regulatory protein BvrR [Brucella sp. 83/13] gi|294819908|gb|EFG36907.1| two-component system protein [Brucella sp. NVSL 07-0026] gi|297174487|gb|EFH33834.1| two-component system, OmpR family, response regulator [Brucella abortus bv. 5 str. B3196] gi|306276200|gb|EFM57900.1| two component transcriptional regulator [Brucella sp. BO1] gi|306287069|gb|EFM58577.1| two component transcriptional regulator [Brucella sp. BO2] gi|306407220|gb|EFM63430.1| two component transcriptional regulator [Brucella sp. NF 2653] gi|326410088|gb|ADZ67153.1| Transcriptional regulatory protein [Brucella melitensis M28] gi|326539805|gb|ADZ88020.1| Transcriptional regulatory protein chvI [Brucella melitensis M5-90] Length = 239 Score = 134 bits (338), Expect = 8e-30, Method: Composition-based stats. Identities = 43/230 (18%), Positives = 80/230 (34%), Gaps = 14/230 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 L+DD + +G +E + + +++ + + Sbjct: 10 IALVDDDRNILTSVSIALESEGYRVETYTDGASALDGLMARPPNLAIFDI--KMPRMDGM 67 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILAR 111 EL R +R S +P+I ++ L G DD + KP R +A Sbjct: 68 ELLRRLRQKSDLPVIFLTSKDDEIDELFGLKMGADDFITKPFSQRLLVERVKAVLRRVAA 127 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + E G + + + +GE L E IL L G ++ Sbjct: 128 RDGTAKPAGQQAKSLERGQLVMDQERHTCTWKGEPVTLTVTEFLILHSLAQRPGVVKSRD 187 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + A Y V++ ++SHI +LRKK + F+ +++ +GY Sbjct: 188 ALMDAAYDE-QVYVDDRTIDSHIKRLRKKFKAVDDSFEMIETLYGVGYRF 236 >gi|93006927|ref|YP_581364.1| two component transcriptional regulator [Psychrobacter cryohalolentis K5] gi|92394605|gb|ABE75880.1| two component transcriptional regulator, winged helix family [Psychrobacter cryohalolentis K5] Length = 240 Score = 134 bits (338), Expect = 8e-30, Method: Composition-based stats. Identities = 37/231 (16%), Positives = 86/231 (37%), Gaps = 12/231 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D + + + + + L + D+ + L+ + Sbjct: 5 ILLIEDDPDLAELISDYLTMNYYDVHHAGLGQEGLDLLDTKERDIDLVVLDLMLPDMDGM 64 Query: 62 ELPRII-----RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LA 110 ++ + I ++VP+I ++ + + G DD + KP RE+ + Sbjct: 65 QVCQKIRGNKNNMTNKVPIIMLTAKGDTTDRVLGLEMGADDYIAKPFEPRELLARIRAVI 124 Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 R + ++ G + VF D + + L + ++L Y + GK + + Sbjct: 125 RRHEQPNQADSQSDSLTFGRLSVFPDSHEVTIDDLPVRLTTHQFQLLHYFATHSGKVLNR 184 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 Q++ A+ + ++ HIS+LR + + + + R +GY Sbjct: 185 EQLWQAMPNDDSSDNIDRAIDVHISRLRALIEDNPRQPKRIITVRGVGYQF 235 >gi|330980754|gb|EGH78857.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 258 Score = 134 bits (338), Expect = 8e-30, Method: Composition-based stats. Identities = 48/225 (21%), Positives = 92/225 (40%), Gaps = 9/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD +++ ++ G + DV ++ L GE L Sbjct: 32 LIVDDDVAIRELLCDYLTRFNINPRGVTDGTQMRQALTVETFDVVVLDLML--PGEDGLS 89 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R +R+ S +P++ ++ + + G DD + KP RE++AR+ I RR++ Sbjct: 90 LCRWLRSTSDIPILMLTARCEPTDRIIGLELGADDYMAKPFEPRELVARIQTILRRVRDE 149 Query: 123 NNRAETGPIRVFSD-----GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + T + G V PL E R+L + + +++ Q+ A Sbjct: 150 RSDQRTTIRFDAWRLNSVLRQLTAADGLVVPLSNAEFRLLRVFLERPHRVLSREQLLDAA 209 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 G EA + ++ +S+LR+KL + + + R GY D Sbjct: 210 RGRSIEAFD-RSIDLLVSRLRQKLGDDPKNPQLIKTVRGEGYLFD 253 >gi|294667110|ref|ZP_06732335.1| two-component system regulatory protein, OmpR family [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292603120|gb|EFF46546.1| two-component system regulatory protein, OmpR family [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 259 Score = 134 bits (338), Expect = 8e-30, Method: Composition-based stats. Identities = 47/227 (20%), Positives = 96/227 (42%), Gaps = 12/227 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD ++ G ++ ++ + + R D+ ++ GE L Sbjct: 29 LVVDDDPDLRKLIGEFLSAHGYQVDMAENVAEMRSVMAQRRPDLIVLDVM--MPGEDGLS 86 Query: 63 LPRIIRAHSQVP-LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 R + + P +I +S + + + G DD + KP + RE+LARV A+ RR + Sbjct: 87 AARALASERGSPAVIMLSALGNDTDRIIGLEVGADDYLAKPCNPRELLARVRALLRRSQA 146 Query: 122 SNNRAETGPIRVFSDGRD--------PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 SN +A+ G + G L E +L + + + +++ Q+ Sbjct: 147 SNEQADQRGNVYEFAGWRLDVVRRDLRDPTGIFINLSDGEFALLRTFVEHPQRVLSRDQL 206 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G D V + ++S IS+LR+K+ ++ + + + R GY + Sbjct: 207 LDYARGR-DTDVYDRAIDSQISRLRRKINERVHTELIRTVRNEGYML 252 >gi|325680084|ref|ZP_08159651.1| putative subtilin biosynthesis regulatory protein SpaR [Ruminococcus albus 8] gi|324108247|gb|EGC02496.1| putative subtilin biosynthesis regulatory protein SpaR [Ruminococcus albus 8] Length = 223 Score = 134 bits (338), Expect = 8e-30, Method: Composition-based stats. Identities = 52/221 (23%), Positives = 94/221 (42%), Gaps = 7/221 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD V F +G + + Q+S + D+ ++ + Sbjct: 4 ILIADDEPDVVSLVKDYFELNGYLVFTAKNGSEAIK-QASRQPDIILLDIN--MPEADGI 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR + P++ ++ + F +G DD + KP E+ AR+AA RR Sbjct: 61 EVCRRIRDYVPCPIVFLTARIEDSDKVSGFAAGGDDYIIKPFSLEELGARIAAHIRRENR 120 Query: 122 SNNRAE---TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 S + + G + V GE L ++E +ILE L N G+ +K +I+ ++ Sbjct: 121 SAAKRDVLLCGSLSVDYGNMTVSSGGEEINLAKKEFQILELLSRNTGQVYSKERIYEKVW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 +D + +VV HI +LR KL +++ +GY Sbjct: 181 S-YDAEGDSSVVAEHIRRLRSKLSKYGEGSHIETVWGMGYK 220 >gi|312115807|ref|YP_004013403.1| two component transcriptional regulator, winged helix family [Rhodomicrobium vannielii ATCC 17100] gi|311220936|gb|ADP72304.1| two component transcriptional regulator, winged helix family [Rhodomicrobium vannielii ATCC 17100] Length = 226 Score = 134 bits (338), Expect = 8e-30, Method: Composition-based stats. Identities = 53/221 (23%), Positives = 93/221 (42%), Gaps = 6/221 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D D G+ G E E +S++ DV ++ L L Sbjct: 4 LIVEDDRTAADFLAKALGEAGFQTEIAGDGEAAFDSATSSKFDVLIVDRML--PKLDGLT 61 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA--AIYRRL 119 L +R P++ +S ++ + SG DD + KP E++ARV Sbjct: 62 LVERLRERGDTTPVLILSALGAVDDRVKGLRSGGDDYLPKPYSLVELVARVEALTRRGPT 121 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + G + + GE L RE R+LEYLM + G+ V +T + ++ Sbjct: 122 ERAVTTYAVGDLVLDRLSHKVSRGGETIVLQPREYRLLEYLMKHAGQVVTRTMLLENVWD 181 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + NV++ HIS+LR K+ G +++ R GY I Sbjct: 182 -YHFDPQTNVIDVHISRLRSKIDKGQGKPLLETVRGAGYMI 221 >gi|197105292|ref|YP_002130669.1| response regulator [Phenylobacterium zucineum HLK1] gi|196478712|gb|ACG78240.1| response regulator [Phenylobacterium zucineum HLK1] Length = 251 Score = 134 bits (338), Expect = 8e-30, Method: Composition-based stats. Identities = 50/223 (22%), Positives = 90/223 (40%), Gaps = 8/223 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD +++ + +S E + D+ ++ LE Sbjct: 24 LVVDDDPHIRELLVFALEKARLSARVAEDGEAALAAVAEQAPDLVILDIN--MPRLDGLE 81 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +RA +P++ +S + + G DD V KP RE+ ARV AI RR++ Sbjct: 82 VCRRLRAQGDLPILFLSSRDDEIDRVLGIELGGDDYVVKPFSPREVTARVQAILRRVRGR 141 Query: 123 NNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 G +R + PL E +IL LM + ++ I + Sbjct: 142 AEPRGPGVLRHGRLSLDPEAWTARWDEVEAPLTVTEFQILRVLMGAPARVFSRDAIIDRL 201 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G A+ + ++SHI LR K G D V+++ +GY + Sbjct: 202 HG-PGFAITDRTIDSHIRNLRAKFARAGGHDVVETRAGVGYRL 243 >gi|308231597|ref|ZP_07663887.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu001] gi|308369995|ref|ZP_07666840.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu002] gi|308370458|ref|ZP_07666935.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu003] gi|308371718|ref|ZP_07667231.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu004] gi|308373532|ref|ZP_07667599.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu005] gi|308374053|ref|ZP_07667699.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu006] gi|308375208|ref|ZP_07667966.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu007] gi|308376453|ref|ZP_07668274.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu008] gi|308377474|ref|ZP_07479280.2| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu009] gi|308378680|ref|ZP_07668799.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu010] gi|308379824|ref|ZP_07669054.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu011] gi|308395904|ref|ZP_07669353.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu012] gi|308216603|gb|EFO76002.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu001] gi|308325660|gb|EFP14511.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu002] gi|308331909|gb|EFP20760.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu003] gi|308335696|gb|EFP24547.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu004] gi|308337275|gb|EFP26126.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu005] gi|308343200|gb|EFP32051.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu006] gi|308347069|gb|EFP35920.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu007] gi|308351012|gb|EFP39863.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu008] gi|308355644|gb|EFP44495.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu009] gi|308359599|gb|EFP48450.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu010] gi|308363527|gb|EFP52378.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu011] gi|308367210|gb|EFP56061.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis SUMu012] gi|323720956|gb|EGB30021.1| two component system transcriptional regulator tcrA [Mycobacterium tuberculosis CDC1551A] Length = 234 Score = 134 bits (338), Expect = 8e-30, Method: Composition-based stats. Identities = 38/221 (17%), Positives = 80/221 (36%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + ++G +++ D ++ L G Sbjct: 6 ILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVML--PGIDGF 63 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ +R P++ ++ ++ + D G DD + KP + E+ AR+ A+ RR Sbjct: 64 EVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRGP 123 Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + R+ L +E +LE L+ G + Q+ + Sbjct: 124 IPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWD 183 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 N+V+ +I LR K+ G +++ R GY + Sbjct: 184 AA-YEARSNIVDVYIRYLRDKIDRPFGVTSLETIRGAGYRL 223 >gi|37523731|ref|NP_927108.1| two-component response regulator [Gloeobacter violaceus PCC 7421] gi|35214736|dbj|BAC92103.1| two-component response regulator [Gloeobacter violaceus PCC 7421] Length = 246 Score = 134 bits (338), Expect = 8e-30, Method: Composition-based stats. Identities = 41/228 (17%), Positives = 86/228 (37%), Gaps = 9/228 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKVL 61 ++IDD + + G + + D+ ++ L G + Sbjct: 5 LVIDDDPAILELVAFNLEMSGYEVLEAPDGHKGQAFALQMLPDLIVLDLMLPQVDGLTIC 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R +++P++ ++ ++ + F++G DD + KP E+L RV A+ RR Sbjct: 65 QRLRRDERTAEIPILMLTALGQIKDKVGGFNAGADDYMTKPFEIEELLVRVRALLRRTDR 124 Query: 122 SNNRAETGPIRVF------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 A I + + + L E +L L+ G+ V+ ++I Sbjct: 125 MPQAARHAEILSLGPLTLIPERFECIWFNKPIKLTHLEFELLHCLLQRHGQTVSPSEILR 184 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 ++G +D + + HI LR KL + + + GY ++ Sbjct: 185 EVWG-YDPDDDIETIRVHIRHLRTKLEPDPRHPQFIKTVYGAGYCLEV 231 >gi|256420293|ref|YP_003120946.1| two component transcriptional regulator, winged helix family [Chitinophaga pinensis DSM 2588] gi|256035201|gb|ACU58745.1| two component transcriptional regulator, winged helix family [Chitinophaga pinensis DSM 2588] Length = 235 Score = 134 bits (338), Expect = 8e-30, Method: Composition-based stats. Identities = 45/232 (19%), Positives = 95/232 (40%), Gaps = 16/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D V + G + + + + + ++ L G + Sbjct: 3 LLLIEDEPSVVSFIRRYLAEAGYDVSVALDGQSGLQMATENNFQLIILDVML--PGMNGI 60 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + + +R P++ ++ S + + DSG DD + KP E+LAR+ ++ RR Sbjct: 61 AVCKALRQQQLTTPILMLTALGSTENVVAGLDSGADDYLVKPFKQAELLARIRSLLRRNN 120 Query: 121 VSNNRAETGPIRV------------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 + A + + + G+ L E R+LEY+M N + + Sbjct: 121 DTAAAATPAVTQSNGNVLKVADLELDLNTKSASRYGQTIVLTATEYRLLEYMMRNPKRVL 180 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +I ++G+ D + VV+ +++ LRKK+ K + + +GY + Sbjct: 181 SRMEILENVWGV-DFNMNTKVVDVYVNYLRKKVNRKDQPALIQTVVGMGYML 231 >gi|228989788|ref|ZP_04149768.1| Two-component response regulator [Bacillus pseudomycoides DSM 12442] gi|228769935|gb|EEM18518.1| Two-component response regulator [Bacillus pseudomycoides DSM 12442] Length = 230 Score = 134 bits (338), Expect = 8e-30, Method: Composition-based stats. Identities = 42/220 (19%), Positives = 75/220 (34%), Gaps = 6/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L+DD + + G + S + + ++ Sbjct: 4 ILLVDDEPRMLELLTLYLTPRGYNCVCATSGQEAISYIENQSFKFVLLDIM--MPKMDGW 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E IR+ S VP+I ++ + G DD + KP H E+ R Sbjct: 62 ETCNRIRSFSNVPIIMVTARDQTIDVIQGLKIGSDDYITKPFHEGEL-LARIEAVLRRSN 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + I V + L E +L + + +++ Q+ I+GL Sbjct: 121 QHEQLRYKGILWDEAKHFISVYEQELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGL- 179 Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219 D E+ V+SHI LR KLR + + + +GY Sbjct: 180 DTNTEDRTVDSHIRNLRDKLRKNNFPIDEHLKTVYGVGYR 219 >gi|229170768|ref|ZP_04298394.1| Two-component response regulator vanRB [Bacillus cereus AH621] gi|228612717|gb|EEK69916.1| Two-component response regulator vanRB [Bacillus cereus AH621] Length = 214 Score = 134 bits (338), Expect = 8e-30, Method: Composition-based stats. Identities = 44/220 (20%), Positives = 91/220 (41%), Gaps = 9/220 (4%) Query: 5 IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64 ++D +++ + + + D+ ++ E+ Sbjct: 2 VEDDQEIQELIKQFLMTQQYKVIVASDGLEGMKQFNKQSFDLILLDVM--MPNLNGFEVA 59 Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRLKVS 122 ++IR+ S +P+I ++ Q + FD G+DD + KP ++ RV A + + Sbjct: 60 KMIRSQSNIPIIMLTALEEEQDQMKGFDLGIDDYITKPFSFHVLMRRVEAVLRRSNNQST 119 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 +N + V D V PL +E IL+ L+ N K + + I I+G ++ Sbjct: 120 DNHFVFRELHVDGDAYKVYVNKVEVPLTTKEFEILQLLLQNEKKVLTRENIVEKIWG-YE 178 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 A + ++++H+ +RKKL + + + +GY ID Sbjct: 179 YAGDTRMIDTHMKNIRKKLDIP----YIKTVKGIGYKIDE 214 >gi|256823309|ref|YP_003147272.1| two component transcriptional regulator PhoB, winged helix family [Kangiella koreensis DSM 16069] gi|256796848|gb|ACV27504.1| two component transcriptional regulator PhoB, winged helix family [Kangiella koreensis DSM 16069] Length = 230 Score = 134 bits (337), Expect = 8e-30, Method: Composition-based stats. Identities = 47/223 (21%), Positives = 97/223 (43%), Gaps = 6/223 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-EDVSAIEAFLIG-KGEKV 60 ++++D +++ G +E + E L D+ ++ L G G ++ Sbjct: 6 LILEDERDIREMLAFCMQQAGYQVEQAATAERVFGLLKEGFVPDIMLVDWMLPGASGVEL 65 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYR 117 + + + + VP+I ++ + ++G DD V KP RE + V Sbjct: 66 TKKLKKDQKYQDVPVIMLTARGEEDDRVQGLEAGADDYVVKPFSPRELLARVQAVLRRSG 125 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + + G I++ + G ++ GE L E +IL + M++ + ++ Q+ ++ Sbjct: 126 KGNNPSEQISHGDIQLDTAGHRVQINGEEVHLGPTEYKILHFFMSHPERVYSRGQLLDSV 185 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G VEE V+ HI +LRK L++ + V + R GY Sbjct: 186 WGQ-QVVVEERTVDVHIRRLRKALQDYNVENYVQTVRGSGYRF 227 >gi|153814418|ref|ZP_01967086.1| hypothetical protein RUMTOR_00628 [Ruminococcus torques ATCC 27756] gi|317500137|ref|ZP_07958370.1| DNA-binding response regulator ResD [Lachnospiraceae bacterium 8_1_57FAA] gi|331087636|ref|ZP_08336564.1| hypothetical protein HMPREF1025_00147 [Lachnospiraceae bacterium 3_1_46FAA] gi|145848814|gb|EDK25732.1| hypothetical protein RUMTOR_00628 [Ruminococcus torques ATCC 27756] gi|316898426|gb|EFV20464.1| DNA-binding response regulator ResD [Lachnospiraceae bacterium 8_1_57FAA] gi|330399815|gb|EGG79475.1| hypothetical protein HMPREF1025_00147 [Lachnospiraceae bacterium 3_1_46FAA] Length = 235 Score = 134 bits (337), Expect = 8e-30, Method: Composition-based stats. Identities = 47/222 (21%), Positives = 87/222 (39%), Gaps = 7/222 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ +D A + + + + S + L D+ ++ L G Sbjct: 5 ILIAEDDADINNLLAKILRTEHFKPIQAFSGTEAKLLFMHNTPDLILLDLML--PGLSGE 62 Query: 62 ELPRIIRAH--SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 EL +R + S VP+I +S +L + G DD + KP E++AR+ A RR Sbjct: 63 ELLSELRENLSSDVPVIILSAKIALADKVSLLKMGADDYITKPFEPEEVIARIQAALRRT 122 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S + ++ D R V G L E +L + N K ++ ++ ++ Sbjct: 123 ATSKKLSCLNL-ELYPDSRKVTVHGIELSLTAHEYDLLYLFIKNPEKVYSREMLYDLVW- 180 Query: 180 LFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220 E N V H+S LRKK+ + + + +G+ + Sbjct: 181 HGGYYGENNTVNVHVSNLRKKIKEADPENEYIRTVYGIGFKL 222 >gi|323498483|ref|ZP_08103476.1| putative DNA-binding response regulator [Vibrio sinaloensis DSM 21326] gi|323316372|gb|EGA69390.1| putative DNA-binding response regulator [Vibrio sinaloensis DSM 21326] Length = 224 Score = 134 bits (337), Expect = 8e-30, Method: Composition-based stats. Identities = 40/223 (17%), Positives = 94/223 (42%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++I+D + ++ G +++ + S D+ ++ L G K+ Sbjct: 3 LLIIEDDSTTREFIAKGLQQHGYTVDQAEDGNSGLMMALSGEYDLVILDRMLPYLDGMKI 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L + Q+P++ +S S++ +D +G DD + KP E++ARV I R + Sbjct: 63 LSAIKATIE--QLPVLILSAMDSVEDRVDGLQAGSDDYLIKPFALAELIARVDIIINRTQ 120 Query: 121 VSNNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + L +E +++++ + + + V++ ++F +I Sbjct: 121 RQGRPQTSLSYDCLTVDLRAHKVTCHDIELQLQPKEFQLIQHFVEHHEQVVSRMRLFESI 180 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + + NV++ H++ LR+KL + + + R GY + Sbjct: 181 WS-YHFDPKTNVIDVHVANLRRKLEEAGCQNLLHTVRGAGYVL 222 >gi|302540933|ref|ZP_07293275.1| DNA-binding response regulator PhoP [Streptomyces hygroscopicus ATCC 53653] gi|302458551|gb|EFL21644.1| DNA-binding response regulator PhoP [Streptomyces himastatinicus ATCC 53653] Length = 249 Score = 134 bits (337), Expect = 8e-30, Method: Composition-based stats. Identities = 42/229 (18%), Positives = 92/229 (40%), Gaps = 14/229 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++ + G G + + R D+ ++ L Sbjct: 13 ILVVEDDPGIRLLLESALGLAGYQVSSAATGRDGLLEVERFRPDLLVLDVML--PDLDGF 70 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILAR 111 E+ R +R + P++ ++ + + +G DD V KP E Sbjct: 71 EITRNLRGVGVRTPILFLTARTEVGDRIAGLGAGGDDYVGKPFSIEEVLLRIRAILRRTG 130 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 Y + G + + + G+ PL E ++L LM N G+ ++K+ Sbjct: 131 HDVPYGAGEDETEVLRYGDLELDERAHEVHRAGQYIPLSPTEFKLLTLLMENAGRVLSKS 190 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +I ++G FD + + +VE+++ LR+K+ + L + ++R +GY + Sbjct: 191 RILDRVWG-FDFSGDGRIVETYVRYLRRKI-DHLDPPLIHTERGVGYCL 237 >gi|168180067|ref|ZP_02614731.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|226948673|ref|YP_002803764.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] gi|182668999|gb|EDT80975.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916] gi|226843534|gb|ACO86200.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] Length = 233 Score = 134 bits (337), Expect = 8e-30, Method: Composition-based stats. Identities = 41/227 (18%), Positives = 85/227 (37%), Gaps = 10/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + G + + ++ ++ L Sbjct: 5 IMIIEDDKNIARLLGEHIEKYGYEALVAKDFKKILETFEIEKPNLILLDVNL--PKFDGY 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 R IR S P+I IS S + +SG DD + KP ++ +LA++ + RR+ Sbjct: 63 YWCRRIREKSLCPIIFISARDSEMNQVMAIESGADDYITKPFYYEVVLAKIKSQLRRVYG 122 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRI-------LEYLMANRGKRVAKTQIF 174 + +G + +E + L+ +M + + ++ Sbjct: 123 DYAANSQVERILDVEGLLFYPERLQVHFTGKETMLSKKEGDLLDAMMKIYPRVATREELL 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 I+ V+EN + +I++LRKKL + D +++ R GY ++ Sbjct: 183 EKIWDDTTF-VDENTLNVNIARLRKKLLDLGIKDSIETVRGAGYRLN 228 >gi|149919419|ref|ZP_01907900.1| DNA-binding response regulator [Plesiocystis pacifica SIR-1] gi|149819725|gb|EDM79150.1| DNA-binding response regulator [Plesiocystis pacifica SIR-1] Length = 223 Score = 134 bits (337), Expect = 8e-30, Method: Composition-based stats. Identities = 61/220 (27%), Positives = 96/220 (43%), Gaps = 9/220 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +LIDD A + + G +GV LE + ++ DV ++ G LE Sbjct: 6 LLIDDDARLFELLSGYLGQNGVELEHAVDGAAGLRVLANESHDVVLLDGM--MPGMDGLE 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +RA S +P++ ++ + + G DD + KP RE+LAR+ A+ RR+ Sbjct: 64 VLRRLRARSAIPVLMLTARGDEADRVVGLELGADDYIAKPFSSRELLARLRAVLRRMHPE 123 Query: 123 NNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 R + R+ V+GE L E +L L+ G+ V + + G Sbjct: 124 VGRERLSANGVVALIGTREVRVEGEAASLTGLEFDLLVALLRRAGRVVTRAALLHEA-GR 182 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D V E V+ HISKLRKKL + + R +GY Sbjct: 183 DDTVVSERTVDVHISKLRKKLGGDK----IKTVRGVGYVF 218 >gi|75762099|ref|ZP_00742004.1| Two-component response regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74490417|gb|EAO53728.1| Two-component response regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 275 Score = 134 bits (337), Expect = 8e-30, Method: Composition-based stats. Identities = 44/220 (20%), Positives = 76/220 (34%), Gaps = 6/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L+DD + + G + S E + ++ Sbjct: 54 ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIM--MPKMDGW 111 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E + IR+ S VP+I ++ + G DD V KP H E+ R Sbjct: 112 ETCKRIRSFSNVPIIMVTARDQTVDVIQGLKLGADDYVTKPFHEEEL-FARIEAVLRRTN 170 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + + I V E L E +L + + +++ Q+ I+GL Sbjct: 171 EHKQIQYHGIVWDETKHFASVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGL- 229 Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219 + E+ V+SHI LR KLR + + +GY Sbjct: 230 NTNTEDRTVDSHIRNLRDKLRKANFPIDHHLKTVYGVGYR 269 >gi|325262670|ref|ZP_08129406.1| regulatory protein VanR [Clostridium sp. D5] gi|324031764|gb|EGB93043.1| regulatory protein VanR [Clostridium sp. D5] Length = 238 Score = 134 bits (337), Expect = 8e-30, Method: Composition-based stats. Identities = 47/228 (20%), Positives = 81/228 (35%), Gaps = 10/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D ++ ++ + D++ ++ Sbjct: 12 ILIVDDEKEIADLVECYLQNEDFTIFKYYDSREAWECIVREEPDLALMDVM--MPEIDGF 69 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R IR P+I ++ + G DD + KP E++ARV A RR K Sbjct: 70 TLCRQIRERYHFPVIMLTAKGEEIDKITGLTLGADDYIAKPFLPLEMVARVKAQLRRYKR 129 Query: 122 SNNRAETGPI-------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N +E + + E L E IL L NRG+ V+ +F Sbjct: 130 YNQASERDDSVILVSGLMLNVKTHKCTLNEEALSLTPTEFDILRILCENRGEVVSAESLF 189 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 I+ N V HI LR+K+++ + + GY I+ Sbjct: 190 RQIWADEYYVKNNNTVTVHIRHLREKMKDSFENPRYIKTVWGCGYKIE 237 >gi|318040594|ref|ZP_07972550.1| two component transcriptional regulator [Synechococcus sp. CB0101] Length = 256 Score = 134 bits (337), Expect = 8e-30, Method: Composition-based stats. Identities = 43/228 (18%), Positives = 91/228 (39%), Gaps = 9/228 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +LI+D + +++ G ++ + L D+ ++ L G + Sbjct: 5 ILLIEDDSDMRELVAGHLEHSGFDVQRAEDGIKGQALALQYTPDLILLDLMLPKVDGLTL 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R + +P++ ++ S + + F+SG DD + KP E+L R+ A+ RR Sbjct: 65 CQRLRRDERTTGIPILMLTALGSTKDKVSGFNSGADDYLAKPFDLEELLVRIKALLRRSD 124 Query: 121 VSNNRAETGPIRVF------SDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + A+ I + + + E L E +L L+ G+ VA + I Sbjct: 125 RAPLSAKHNEILSYGALTLVPERFEAIWFDEPVRLTHLEFELLHCLLQRHGQTVAPSLIL 184 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 ++G ++ + + H+ LR KL + + + GY ++ Sbjct: 185 KEVWG-YEPDDDIETIRVHVRHLRTKLEPDPRKPRFIKTVYGAGYCLE 231 >gi|297158650|gb|ADI08362.1| two-component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 245 Score = 134 bits (337), Expect = 8e-30, Method: Composition-based stats. Identities = 49/223 (21%), Positives = 94/223 (42%), Gaps = 9/223 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + D +G + + + R D ++ L L Sbjct: 23 LVVDDESALADLLSMALRYEGWEVRTAGNGAEALRITRELRPDAVLLDIML--PDMDGLT 80 Query: 63 LP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR----VAAIYR 117 L R+ +VP++ ++ +++ + +G DD V KP E++AR + Sbjct: 81 LLGRVRNELPEVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLLRRSGA 140 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 S + G + + D + G+ L E +L YLM N + ++K QI + Sbjct: 141 AAARSESLLTVGDLVLDEDSHEVSRAGQEIHLTATEFELLRYLMRNPRRVLSKAQILDRV 200 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + +D + NVVE +IS LR+K+ + + ++R GY I Sbjct: 201 WS-YDFGGQANVVELYISYLRRKI-DAGRSPMIHTRRGAGYLI 241 >gi|296112407|ref|YP_003626345.1| two-component system response regulator [Moraxella catarrhalis RH4] gi|295920101|gb|ADG60452.1| two-component system response regulator [Moraxella catarrhalis RH4] gi|326560837|gb|EGE11203.1| two-component system response regulator [Moraxella catarrhalis 46P47B1] gi|326561915|gb|EGE12250.1| two-component system response regulator [Moraxella catarrhalis 7169] gi|326563058|gb|EGE13332.1| two-component system response regulator [Moraxella catarrhalis 103P14B1] gi|326569554|gb|EGE19608.1| two-component system response regulator [Moraxella catarrhalis BC8] gi|326570341|gb|EGE20385.1| two-component system response regulator [Moraxella catarrhalis BC1] gi|326572378|gb|EGE22371.1| two-component system response regulator [Moraxella catarrhalis BC7] gi|326573651|gb|EGE23610.1| two-component system response regulator [Moraxella catarrhalis CO72] gi|326577274|gb|EGE27162.1| two-component system response regulator [Moraxella catarrhalis 101P30B1] gi|326578036|gb|EGE27900.1| two-component system response regulator [Moraxella catarrhalis O35E] Length = 240 Score = 134 bits (337), Expect = 8e-30, Method: Composition-based stats. Identities = 43/231 (18%), Positives = 95/231 (41%), Gaps = 12/231 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D + + + + + + + + D+S I L+ + Sbjct: 5 ILLIEDDPDLAELISDYLSMNYYEVHHAATGQGGLDILDTKERDISLIVLDLMLPDMDGM 64 Query: 62 ELPRIIR-----AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY 116 E+ + +R ++VP++ ++ + + G DD + KP RE+LAR+ A+ Sbjct: 65 EVCQKVRGSKNTMINKVPIVMLTAKGDTTDRVLGLEMGADDYIAKPFEPRELLARIRAVL 124 Query: 117 RRLKVSNNRA------ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 RR + N G + V+ D + + + L + ++L Y + GK + + Sbjct: 125 RRHETPNQADTNSGSLTFGRLTVYPDSHEVTIDEKTVRLTTHQFQLLHYFATHAGKVLNR 184 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 Q++ A+ + ++ HIS+LR + + + + R +GY Sbjct: 185 EQLWQAMPNDDSSENIDRAIDVHISRLRALIEDNPRQPKRIITVRGVGYQF 235 >gi|229148989|ref|ZP_04277234.1| Two-component response regulator [Bacillus cereus m1550] gi|228634529|gb|EEK91113.1| Two-component response regulator [Bacillus cereus m1550] Length = 242 Score = 134 bits (337), Expect = 8e-30, Method: Composition-based stats. Identities = 43/220 (19%), Positives = 75/220 (34%), Gaps = 6/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L+DD + + G + S E + ++ Sbjct: 21 ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIM--MPKMDGW 78 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E + IR+ S +P+I ++ + G DD V KP H E+ R Sbjct: 79 ETCKKIRSFSNIPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEEL-FARIEAVLRRTN 137 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + + I V E L E +L + + + + Q+ I+GL Sbjct: 138 EHKQIQYHGIVWDETKHFVSVHNEELLLTPIEFSLLGLFLRHVNYVLNRDQLIERIWGL- 196 Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219 + E+ V+SHI LR KLR + + +GY Sbjct: 197 NTNTEDRTVDSHIRNLRDKLRKANFPIDHHLKTVYGVGYR 236 >gi|281356725|ref|ZP_06243216.1| two component transcriptional regulator, winged helix family [Victivallis vadensis ATCC BAA-548] gi|281316852|gb|EFB00875.1| two component transcriptional regulator, winged helix family [Victivallis vadensis ATCC BAA-548] Length = 230 Score = 134 bits (337), Expect = 8e-30, Method: Composition-based stats. Identities = 47/223 (21%), Positives = 90/223 (40%), Gaps = 6/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D A D + G + + ++ D++ ++ L G Sbjct: 3 ILLVEDDARTADFILKGLQQSGYTTVHAADGRDGLFKATTESCDLAVVDIML--PGLDGF 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118 L +RA P+I +S S+ + +G DD + KP E++AR+ A Sbjct: 61 TLIEKLRAAGIKLPVIVLSARSSVDDKIRALQTGGDDYLVKPFSFSELIARIQALLRRAS 120 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + G + + R + E +LEYL N G+ V+KT I ++ Sbjct: 121 ATAEPSTLTVGDLSIDLLSRKVYRGSTRIDIQPLEFTLLEYLARNAGRVVSKTMIMEHVW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ + N+VE+ + +LR+KL + + R GY ++ Sbjct: 181 -EYNFDPQTNIVETRMCRLREKLDKPFKEKLLHTVRGFGYVLE 222 >gi|52144737|ref|YP_082091.1| response regulator [Bacillus cereus E33L] gi|51978206|gb|AAU19756.1| probable response regulator [Bacillus cereus E33L] Length = 229 Score = 134 bits (337), Expect = 8e-30, Method: Composition-based stats. Identities = 52/222 (23%), Positives = 98/222 (44%), Gaps = 7/222 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A + + + + D+ ++ + E +L D ++ Sbjct: 9 LLVVEDNASLLESIVQILRDE-FEVDTALNGEEGLFLALQNIYDAILLDVM--MPEMDGF 65 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118 E+ + IR + P++ ++ SL+ + D G DD + KP E+ AR+ A Sbjct: 66 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 125 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + I +F +D +V G+ L ++ +LEYL+ N GK + + QIF ++ Sbjct: 126 SLTTKQTIRYKGIELFGKDKDVQVDGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVW 185 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G FD +VE +I LRKKL + + R +GY + Sbjct: 186 G-FDSDTTVAIVEVYIHHLRKKLEPFGYQKDIQTVRGIGYIL 226 >gi|15595660|ref|NP_249154.1| DNA-binding response regulator CreB [Pseudomonas aeruginosa PAO1] gi|254243559|ref|ZP_04936881.1| two-component response regulator CreB [Pseudomonas aeruginosa 2192] gi|9946324|gb|AAG03852.1|AE004484_4 two-component response regulator CreB [Pseudomonas aeruginosa PAO1] gi|126196937|gb|EAZ61000.1| two-component response regulator CreB [Pseudomonas aeruginosa 2192] Length = 229 Score = 134 bits (337), Expect = 8e-30, Method: Composition-based stats. Identities = 56/222 (25%), Positives = 97/222 (43%), Gaps = 8/222 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A + D + +G + LQ D+ ++ L Sbjct: 4 ILIVEDEAAIADTLLYALQAEGFATTWVTLAGEALALQERQPADLLILDVGL--PDISGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E + +R S+VP+I ++ + + + G DD V KP RE+ ARV AI +R+ Sbjct: 62 EACKRLRRFSEVPVIFLTARDAEIDRVVGLEIGADDYVVKPFSPREVAARVKAILKRMAP 121 Query: 122 SN----NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 A +GP +V + + L R E R+L+ L+ + ++ Q+ A+ Sbjct: 122 RPAALEEAAPSGPFQVDEERVRIHYRDTPLNLTRHEFRLLQTLLGQPERVFSREQLLDAL 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218 G+ EA E ++SHI LR KLR + + + R LGY Sbjct: 182 -GVASEAGYERNIDSHIKSLRAKLRQVNERGEAIQTHRGLGY 222 >gi|300813185|ref|ZP_07093559.1| response regulator ArlR [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300495843|gb|EFK30991.1| response regulator ArlR [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 237 Score = 134 bits (337), Expect = 8e-30, Method: Composition-based stats. Identities = 44/229 (19%), Positives = 81/229 (35%), Gaps = 14/229 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G N+ S D ++ L L Sbjct: 4 ILIVEDEKNLARFVELELQHEGYETVVENNGRKALDRALSEDFDAILLDLML--PDLNGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----------REILA 110 E+ R +R P+I ++ S+ + D G DD + KP R + Sbjct: 62 EIARRVRQSKATPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRRVKI 121 Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 A +L ++ G+ L +RE +L L+ N+ V + Sbjct: 122 EKDASKDKLPRQKVVKFKDLTIETANRIVHRGDGKTVDLTKREYNLLMTLIENKNNVVGR 181 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 Q+ + I+G + +E NVVE ++ LR K+ + + R GY Sbjct: 182 DQLLNKIWG-PESNIETNVVEVYVRYLRNKIDIPGQPSYIKTVRGTGYM 229 >gi|300787465|ref|YP_003767756.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299796979|gb|ADJ47354.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 231 Score = 134 bits (337), Expect = 8e-30, Method: Composition-based stats. Identities = 42/227 (18%), Positives = 85/227 (37%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 V++DD V+D +G ++ L + D ++ L Sbjct: 3 LVIVDDETAVQDSLSRTLRFEGYTVSVAGDGAAGLNLVRAEAPDGVLLDV--TMPVLGGL 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARVA 113 E+ R++RA P++ ++ + + D+G DD + KP R +L R Sbjct: 61 EVCRVLRAEGNTVPVLMLTARTGVTDRVAGLDAGADDYLVKPFALQELLARVRALLRRTG 120 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + + R+ L R E +LE + + + +T + Sbjct: 121 YHTPPAPAAPAALRFADVALDPATREVFRGHRPLHLTRTEFAMLETFLRHPRIVLTRTVM 180 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 F ++G +D N ++ ++S LR+KL + + R +GY + Sbjct: 181 FENVWG-YDFGTASNGLDVYVSYLRRKLEADGEPRLLHTVRGVGYVL 226 >gi|296111273|ref|YP_003621655.1| response regulator [Leuconostoc kimchii IMSNU 11154] gi|295832805|gb|ADG40686.1| response regulator [Leuconostoc kimchii IMSNU 11154] Length = 229 Score = 134 bits (337), Expect = 8e-30, Method: Composition-based stats. Identities = 47/226 (20%), Positives = 88/226 (38%), Gaps = 11/226 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + +G +E + DV ++ L LE Sbjct: 5 LIVEDEENLAKFVGLELKHEGYEVETVLDGRAGLDAALANNYDVILLDLML--PELNGLE 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARVAAI 115 + R +R + P+I ++ S+ + D G DD + KP R +L R+A Sbjct: 63 VARRLRESKKTPIIMMTARDSVIDRISGLDYGADDYLVKPFAIEELLARIRSLLRRIAIE 122 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 +R+ + R ++ L +RE +L L+ N ++ Q+ Sbjct: 123 TESNDKHRAIINFKDLRIEKENRIARRDNQIINLTKREYDLLLTLVENINVVQSREQLLK 182 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220 ++G FD VE NVV+ +I LR K+ + + + R GY + Sbjct: 183 EVWG-FDSEVETNVVDVYIRYLRNKIDDPESKASYIQTVRGTGYVM 227 >gi|239982791|ref|ZP_04705315.1| turgor pressure regulator [Streptomyces albus J1074] gi|291454638|ref|ZP_06594028.1| response regulator [Streptomyces albus J1074] gi|291357587|gb|EFE84489.1| response regulator [Streptomyces albus J1074] Length = 231 Score = 134 bits (337), Expect = 8e-30, Method: Composition-based stats. Identities = 43/225 (19%), Positives = 84/225 (37%), Gaps = 9/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + ++ L + DV ++ L ++ Sbjct: 5 LVVDDEPQIVRALELNLRARQYEVDSAGDGTTALRLAAERHPDVIVLDLGL--PDMDGVD 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-----ILARVAAIYR 117 + R +R+ S+VP++ +S S + D+G DD V KP E A Sbjct: 63 VLRGLRSWSRVPVLVLSARQSSDEKVQALDAGADDYVTKPFGMDELLARLRAAVRRTEPA 122 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + V + QG L E +LE L+ N G+ V++ Q+ + Sbjct: 123 APDEEAEVVDAADFTVDLAAKRVHRQGRDVRLTPTEWHLLEVLVRNTGRLVSQKQLLQEV 182 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 +G E N + ++++LR+KL + ++ +GY + Sbjct: 183 WGPS-YGTESNYLRVYMAQLRRKLETDPAHPRHFITEPGMGYRFE 226 >gi|228956988|ref|ZP_04118764.1| Two-component response regulator [Bacillus thuringiensis serovar pakistani str. T13001] gi|228802687|gb|EEM49528.1| Two-component response regulator [Bacillus thuringiensis serovar pakistani str. T13001] Length = 228 Score = 134 bits (337), Expect = 8e-30, Method: Composition-based stats. Identities = 52/222 (23%), Positives = 98/222 (44%), Gaps = 7/222 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A + + + + D+ ++ + E +L D ++ G Sbjct: 8 LLVVEDNASLLESIVQILRDE-FEVDTAINGEDGLFLALQNIYDAILLDVM--MPGMDGF 64 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118 E+ + IR + P++ ++ SL+ + D G DD + KP E+ AR+ A Sbjct: 65 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 124 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + I +F +D +V G+ L ++ LEYL+ N GK + + QIF ++ Sbjct: 125 SLTTQQTIRYKGIELFGKDKDVQVDGKGMKLSLKQYEFLEYLVQNSGKILMREQIFDRVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G FD +VE ++ LRKKL + + R +GY + Sbjct: 185 G-FDSDTTVAIVEVYVHHLRKKLEPFGYQKDIQTVRGIGYIL 225 >gi|153940791|ref|YP_001390392.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|152936687|gb|ABS42185.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|295318479|gb|ADF98856.1| DNA-binding response regulator [Clostridium botulinum F str. 230613] Length = 228 Score = 134 bits (337), Expect = 8e-30, Method: Composition-based stats. Identities = 51/224 (22%), Positives = 98/224 (43%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D V + A +G + + S + ++ L Sbjct: 4 ILIIEDEKRVSEVLKAYLEKEGYKVYCTTKGLESIEIFKSIDIQLIILDLML--PDISGE 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYR---- 117 E+ RIIR S V + ++ +L ++ + G D+ + KP RE+ ARV A++R Sbjct: 62 EVCRIIRQSSDVHIFMLTAKGALNDRIEGLNIGADEYLIKPFSPRELTARVNALFRRLST 121 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 SN + G + + D R +V G+ + E IL L++N+GK +++ Q+ + I Sbjct: 122 YNSTSNLIFDDGRLSIDYDKRVVKVNGKEVSITPNEFDILYTLVSNKGKVLSREQLINKI 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 +G+ D + ++ HI +RKK+ + + +GY Sbjct: 182 FGI-DFNGYDRTIDVHIKNIRKKIEEDTKNPKYIVTVMKVGYKF 224 >gi|172064834|ref|YP_001815546.1| two component transcriptional regulator [Burkholderia ambifaria MC40-6] gi|171997076|gb|ACB67993.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria MC40-6] Length = 239 Score = 134 bits (337), Expect = 8e-30, Method: Composition-based stats. Identities = 49/228 (21%), Positives = 89/228 (39%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A + D D+ + L D ++ L G L Sbjct: 7 ILIVEDDADIADVLSLHLRDERYEVVHSADGTEGLRLLEQGNWDALILDLML--PGVDGL 64 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R RA P+I S S + + G DD + KP E++ARV A+ RR+ Sbjct: 65 EICRRARAMARYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVD 124 Query: 121 VSNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + R+ V G L RE +L + + GK ++ + Sbjct: 125 ALARDSRIDAGTLDVAGLSIDPIAREASVDGTRIDLTPREFDLLYFFARHPGKVFSRMDL 184 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 +A++G + E+ V +HI++LR K+ + + + GY + Sbjct: 185 LNAVWG-YQHEGYEHTVNTHINRLRAKVEADPAEPVRILTVWGRGYKL 231 >gi|28211158|ref|NP_782102.1| transcriptional activator protein [Clostridium tetani E88] gi|28203598|gb|AAO36039.1| transcriptional activator protein [Clostridium tetani E88] Length = 222 Score = 134 bits (337), Expect = 8e-30, Method: Composition-based stats. Identities = 50/223 (22%), Positives = 103/223 (46%), Gaps = 5/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G ++ + + E + D+ ++ L Sbjct: 3 LLIVEDEKQLLESIAEGLRLSGYVVDIAENGKEAEEMCFVEDYDLVILDINLPL--MDGF 60 Query: 62 ELPRIIRAHSQVPLIGI-SDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119 + + IR H++ I + + ++ + D G +D + KP H E+ AR+ + + R+ Sbjct: 61 SVLKSIREHNKTVNIIMLTAKSDVEDRVLGLDLGANDYMIKPFHFEELEARIRSLLRRKT 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + GPI+ ++ R ++ E F L ++E ILEYL+ N+ + V++ +I ++G Sbjct: 121 VQQDAVIVCGPIKFDTNSRTVQIHDENFKLTKKETTILEYLILNKSRIVSQEEILDHVWG 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 N V H+S LR+KL++K G + + + GY ID Sbjct: 181 DS-VDFLSNTVRVHMSTLRRKLKDKAGCNIIKNVIGEGYIIDE 222 >gi|332185405|ref|ZP_08387153.1| response regulator [Sphingomonas sp. S17] gi|332014383|gb|EGI56440.1| response regulator [Sphingomonas sp. S17] Length = 226 Score = 134 bits (337), Expect = 8e-30, Method: Composition-based stats. Identities = 55/221 (24%), Positives = 103/221 (46%), Gaps = 9/221 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + A G +++ E +L S+ D ++ L L Sbjct: 4 LIVEDEPNLGQQLKATLEGAGYAIDLATDGEEGHFLGSTESYDAIVLDLGL--PEIDGLT 61 Query: 63 LP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120 + R + P++ ++ S + D+G DD V KP E++AR+ A I R Sbjct: 62 VLDRWRKEGKTTPVLVLTARDSWSDKVAGLDAGADDYVAKPFQTEELIARLRALIRRASG 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 +++ G +R+ + GE L +E ++L YL+ ++GK V++T++ IY Sbjct: 122 NASSELTAGDVRLDTRSGKVTRAGEPVKLTAQEYKLLSYLLHHKGKVVSRTELIEHIYDQ 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D + N +E ++++RKKL G D + + R LGYS+D Sbjct: 182 -DFDRDSNTIEVFVTRIRKKL----GQDVITTIRGLGYSLD 217 >gi|322833622|ref|YP_004213649.1| transcriptional regulator [Rahnella sp. Y9602] gi|321168823|gb|ADW74522.1| two component transcriptional regulator, winged helix family [Rahnella sp. Y9602] Length = 224 Score = 134 bits (337), Expect = 8e-30, Method: Composition-based stats. Identities = 59/222 (26%), Positives = 104/222 (46%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D AL++ + G ++ + ++ D++ ++ L GE L Sbjct: 3 ILVIEDNALLRHHLSVQLREMGHQVDAAEDAKEADYFLHEHAPDIAIVDLGL--PGEDGL 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L R R+H P++ ++ S Q + ++G DD V KP H E+LAR+ A+ RR Sbjct: 61 SLIRRWRSHQNNLPILVLTARESWQDKVAVLEAGADDYVTKPFHLEEVLARMQALMRRNS 120 Query: 121 VSNNRAET-GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++ T P ++ R+ V + L E I+E L+ N GK V+K + +Y Sbjct: 121 GLASQVITLQPFQIDLSRRELTVNEQPIKLTAFEYTIIETLIRNAGKVVSKDSLMLQLY- 179 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 E E + V+ + +LRKKL+ + D + + R GY D Sbjct: 180 PDAELRESHTVDVLMGRLRKKLQAEHPVDVITTVRGQGYRFD 221 >gi|319746072|gb|EFV98349.1| DNA-binding response regulator [Streptococcus agalactiae ATCC 13813] Length = 234 Score = 134 bits (337), Expect = 8e-30, Method: Composition-based stats. Identities = 43/224 (19%), Positives = 90/224 (40%), Gaps = 8/224 (3%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + DD ++D + DG ++ F + + + + D+ ++ G Sbjct: 10 IIYFADDEKNIRDLVVPFLEHDGFTVRAFETGDLLLEAYKNQKPDLVILDIM--MPGTNG 67 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L++ + IR + +P+I ++ S + F+ G DD KP ++ V A+++RL Sbjct: 68 LDVMKSIRQYDNIPIIMLTARDSDVDFITAFNLGTDDYFTKPFSPIKLSLHVKALFKRLD 127 Query: 121 VSNNRAETGPIRVFSDGRDPEVQ----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + +T + + E PL + E L L+ ++ + + Sbjct: 128 EKAIKNDTQYQFLDLILDTEKRIALLSNEEMPLTKTEFDFLLVLIEKPETAFSRETLLNR 187 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I+G D +E V+ I +LRKKL+ + + G+ + Sbjct: 188 IWGFDD--IESRAVDDTIKRLRKKLKQYHSQVSIKTVWGYGFKL 229 >gi|317126118|ref|YP_004100230.1| transcriptional regulator [Intrasporangium calvum DSM 43043] gi|315590206|gb|ADU49503.1| two component transcriptional regulator, winged helix family [Intrasporangium calvum DSM 43043] Length = 224 Score = 134 bits (337), Expect = 8e-30, Method: Composition-based stats. Identities = 46/220 (20%), Positives = 87/220 (39%), Gaps = 6/220 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + +G S+ + +W DV ++ L G + Sbjct: 4 LVVEDERPLAAALRRSLESEGFSVVVALNGVDGDWQAQEQTFDVIVLDVML--PGMSGYD 61 Query: 63 LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R +RA P++ ++ D D G DD ++KP + AR+ A+ RR Sbjct: 62 ICRNVRARDDSTPIVFLTAKDGEYDEADALDIGGDDFISKPFSPVVLAARLRALLRRAGE 121 Query: 122 SNNRAETGPIRVFSDGRDPEV-QGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + + L RE ++ YL V+KT+I ++ Sbjct: 122 GPEPSVVVGSLRLEPAKQRAWLGADELRLTAREMALVRYLAHRVDHVVSKTEILEHVWDQ 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + NVVE +I +LR+KL + +++ R LGY + Sbjct: 182 A-FEGDANVVEVYIGRLRRKLATQPD-VAIETVRGLGYRL 219 >gi|161507256|ref|YP_001577210.1| response regulator [Lactobacillus helveticus DPC 4571] gi|160348245|gb|ABX26919.1| Response regulator [Lactobacillus helveticus DPC 4571] Length = 240 Score = 134 bits (337), Expect = 8e-30, Method: Composition-based stats. Identities = 40/233 (17%), Positives = 80/233 (34%), Gaps = 15/233 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D V + F +G + + + I L + + Sbjct: 5 ILMVEDDNSVAEMMGMFFKKEGWQQDIAVDGVEAVDMFKENADKYDLITLDLNLPKKDGI 64 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPI------------HHREI 108 ++ + +RA S P+I ++ S + G D+ V KP H R + Sbjct: 65 QVAKEVRAISPTVPIIMLTARGSESDQVLGLGIGADEYVTKPFSPIALIARIKALHRRVM 124 Query: 109 LARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 + V L +E +L + + Sbjct: 125 MEEDVQTQENNNQEYEIQTAHLKISKDRREVLFDDQLVVDLTPKEFDLLYTMAQKPKQVF 184 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ Q+ ++G ++ EE V++HI KLR+KL K+G + + +GY D Sbjct: 185 SRDQLLDLVWG-YEYYGEERTVDAHIKKLRQKLE-KVGAKVIQTVWGVGYKFD 235 >gi|309389284|gb|ADO77164.1| two component transcriptional regulator, winged helix family [Halanaerobium praevalens DSM 2228] Length = 225 Score = 134 bits (337), Expect = 8e-30, Method: Composition-based stats. Identities = 40/223 (17%), Positives = 92/223 (41%), Gaps = 9/223 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A ++ + ++ L+ + + L + D+ + L+ Sbjct: 4 ILIVEDEAKIRKLIKSYLAEE-YKLKEAANGKKALSLFKNNNFDLIIL--DLMLPKISGE 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117 E+ + IR S +P+I ++ S + + F+ G DD + KP R + A + Sbjct: 61 EVCQNIRQISDIPIIMLTAKSSEEHKIAGFNYGADDYLTKPFSPRELLVRVKALLRRSQN 120 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 K + G ++F + L E +IL L+ N + +++ Q+ + Sbjct: 121 VKKANVIALNKGEYKIFPEKMIVTKDDLDCELTTTEFKILMALINNANQVLSREQLADIV 180 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 GL + + + +++HI +RKK++ + + + GY Sbjct: 181 MGL-EFSGFDRTIDAHIKNIRKKMKLEKD-QYIITVYGAGYKF 221 >gi|310827155|ref|YP_003959512.1| hypothetical protein ELI_1563 [Eubacterium limosum KIST612] gi|308738889|gb|ADO36549.1| hypothetical protein ELI_1563 [Eubacterium limosum KIST612] Length = 231 Score = 134 bits (337), Expect = 8e-30, Method: Composition-based stats. Identities = 46/224 (20%), Positives = 91/224 (40%), Gaps = 10/224 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L++D +++ + + + + L +S D+ ++ L +E Sbjct: 8 LLVEDEKGIRNFISTVLDVNNYRVVEARDGKEALELFTSRCPDLILLDLGL--PDMDGIE 65 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + IR S +P+I +S + ++ D G DD + KP E+LAR+ R +V+ Sbjct: 66 VLKTIRGWSGIPIIVVSARGHEREKVEALDLGADDYITKPFGTSELLARIRTAMRHQQVT 125 Query: 123 NNRAETGPI-----RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + E + D R + E +ILE L GK V QI I Sbjct: 126 VDVPERTIFSVGDLTIDFDKRLVTLNNNPVHFTPIEYKILEILTQYPGKVVTYDQIIKDI 185 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 +G + E + +++ +R+K+ N + ++ +GY Sbjct: 186 WGPYTN--ENQTLRVNMANIRRKIEKNPAEPKYILTEVGVGYRF 227 >gi|229488630|ref|ZP_04382496.1| transcriptional regulatory protein [Rhodococcus erythropolis SK121] gi|229324134|gb|EEN89889.1| transcriptional regulatory protein [Rhodococcus erythropolis SK121] Length = 225 Score = 134 bits (337), Expect = 8e-30, Method: Composition-based stats. Identities = 40/225 (17%), Positives = 94/225 (41%), Gaps = 11/225 (4%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + +L++D A++++ +G + + + A+ D++ ++ L Sbjct: 5 LILLVEDDAVIREATQLNLERNGFRVITASGGLTGMDMAVDAKPDIAVLDVML--PDLNG 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH----HREILARVAAIY 116 + L R IR VP+I +S + ++G DD V KP I + + + Sbjct: 63 ISLCRRIREELSVPVIMLSARDDPVDIVLGLEAGADDYVTKPFDSGVLVARIRSVLRRVE 122 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + G + + + G L E ++L +++ K +++++ S Sbjct: 123 SHSGTEKDIVTLGDLEIDRELVTVTRSGAEVALTPTEMKLLLVMVSVPRKVWSRSELLSD 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ +D + +V+ H+ +LR K+ G + + + R GY++D Sbjct: 183 VWD-YDWGGDTRIVDVHVQRLRTKI----GSEQIRTVRGFGYTMD 222 >gi|229011982|ref|ZP_04169162.1| Two-component response regulator vanRB [Bacillus mycoides DSM 2048] gi|229060400|ref|ZP_04197766.1| Two-component response regulator vanRB [Bacillus cereus AH603] gi|229133551|ref|ZP_04262378.1| Two-component response regulator vanRB [Bacillus cereus BDRD-ST196] gi|229167559|ref|ZP_04295297.1| Two-component response regulator vanRB [Bacillus cereus AH621] gi|228616121|gb|EEK73208.1| Two-component response regulator vanRB [Bacillus cereus AH621] gi|228649951|gb|EEL05959.1| Two-component response regulator vanRB [Bacillus cereus BDRD-ST196] gi|228718990|gb|EEL70607.1| Two-component response regulator vanRB [Bacillus cereus AH603] gi|228749396|gb|EEL99241.1| Two-component response regulator vanRB [Bacillus mycoides DSM 2048] Length = 214 Score = 134 bits (337), Expect = 8e-30, Method: Composition-based stats. Identities = 47/220 (21%), Positives = 89/220 (40%), Gaps = 9/220 (4%) Query: 5 IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64 ++D +++ ++ + + D+ ++ E+ Sbjct: 2 VEDDQEIQELIKQFLMTQQYTVVVASDGLEGMTQFNKQSFDLILLDVM--MPNLNGFEVS 59 Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRLKVS 122 ++IR+ S VP+I ++ + + FD G+DD + KP ++ RV A K Sbjct: 60 KMIRSQSNVPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSYDKNV 119 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 NN +R+ D V L +E IL+ L N K + + I ++G +D Sbjct: 120 NNHLVFKEVRIDVDAYRVYVNDVEILLTTKEFEILQLLFQNERKVLTRENIVEKVWG-YD 178 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 E ++++HI LRKKL + + + +GY ID Sbjct: 179 YFGETRIIDTHIKNLRKKL----AIPYIKTIKGIGYKIDE 214 >gi|163749892|ref|ZP_02157137.1| DNA-binding response regulator [Shewanella benthica KT99] gi|161330406|gb|EDQ01385.1| DNA-binding response regulator [Shewanella benthica KT99] Length = 225 Score = 134 bits (337), Expect = 8e-30, Method: Composition-based stats. Identities = 50/222 (22%), Positives = 99/222 (44%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + + F + G ++E + L +S D+ ++ L L Sbjct: 3 ILLVEDDTTTIEYVVKGFIEQGHNIETASDGHQGLLLATSMNYDLVILDRML--PQLDGL 60 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 +L +RA SQ P++ +S + + +G DD + KP E+L R + +R Sbjct: 61 KLLAALRATGSQTPVLILSALSHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMQRGL 120 Query: 121 VSNNRAETGPIRVFSD--GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 E + + R + G L +E ++L+YLM + + V++T +F A++ Sbjct: 121 SQPAETELSVGNLVMELLTRKVTLDGSELMLQPKEFQLLKYLMEHPNQVVSRTLLFEAVW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + NV++ HI+KLR+K + +++ R GY + Sbjct: 181 D-YHFDPRTNVIDVHIAKLRRKFEELGFGELIETVRGAGYRL 221 >gi|307294613|ref|ZP_07574455.1| two component transcriptional regulator, winged helix family [Sphingobium chlorophenolicum L-1] gi|306879087|gb|EFN10305.1| two component transcriptional regulator, winged helix family [Sphingobium chlorophenolicum L-1] Length = 233 Score = 134 bits (337), Expect = 8e-30, Method: Composition-based stats. Identities = 51/223 (22%), Positives = 102/223 (45%), Gaps = 5/223 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKVL 61 +L++D A + + I F + + E L D+ ++ + G +V Sbjct: 7 LLVEDDAALAELLIWHFKREDFEVSHTVDGEEALLLAQETVPDIVLLDWMVESLSGIEVC 66 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 R + + VP+I ++ + + ++G DD V KP RE++ARV A+ RR++ Sbjct: 67 RRLRRLNGTANVPIIMLTARGEEEDRVRGLETGADDYVTKPFSPRELVARVGAVLRRVRP 126 Query: 122 --SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + + + G G+V PL E R+L++ + + G ++ ++ +++G Sbjct: 127 ALAGETLTFSDVEMDTVGHKVRRGGQVIPLGPTEFRLLKHFLEHPGWVFSRERLLDSVWG 186 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221 D +E V+ HI +LRK + D + + R GY++D Sbjct: 187 Q-DSDIELRTVDVHIRRLRKAINGDGRYQDIIRTVRSAGYALD 228 >gi|307244117|ref|ZP_07526235.1| response regulator receiver domain protein [Peptostreptococcus stomatis DSM 17678] gi|306492488|gb|EFM64523.1| response regulator receiver domain protein [Peptostreptococcus stomatis DSM 17678] Length = 226 Score = 134 bits (337), Expect = 8e-30, Method: Composition-based stats. Identities = 51/224 (22%), Positives = 95/224 (42%), Gaps = 6/224 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++IDD + + G + L + D+ ++ L G + Sbjct: 3 ILVIDDEEHILELLKFNLELSGFDVCVSTEANQTIELIGREKPDLLLLDWMLPKISGIDI 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L+ R +P+I ++ + + G DD + KP +E++AR+ + RR + Sbjct: 63 LKKIRQDEDIYDLPVIMLTAKNMEDDKIQGLNVGADDYITKPFSIKELMARINTVLRRYR 122 Query: 121 VSNNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 +S+ +D V G L R+E +L+ LM NRGK + + + + Sbjct: 123 ISDKSQPVIEAGNIVLNTDQYKLTVDGLKVDLTRKEFELLKLLMENRGKVLKRDYLLEKV 182 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 +G ++ E V+ HI LRKKL ++ + +D+ R LGY + Sbjct: 183 WG-YEFYGETRTVDVHIRHLRKKLGLDETSENGIDTIRGLGYKM 225 >gi|255601445|ref|XP_002537677.1| two-component system sensor histidine kinase/response regulator, putative [Ricinus communis] gi|223515490|gb|EEF24706.1| two-component system sensor histidine kinase/response regulator, putative [Ricinus communis] Length = 228 Score = 134 bits (337), Expect = 8e-30, Method: Composition-based stats. Identities = 48/222 (21%), Positives = 85/222 (38%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D V + G + ++ L +S + ++ L G G L Sbjct: 6 LLIVEDNERVALFLKKGLSESGYEVHHADNGRDGMLLAASTPYEAIIMDRMLPG-GIDGL 64 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118 + +R P++ +S + + SG DD + KP E+ R Sbjct: 65 SIIEALRKTGNNVPILILSAMAEVDDRIKGLQSGGDDYLIKPFSFGELLARVEAIIRRSR 124 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 G + + G+ L RE +LEYLM + K V +T + ++ Sbjct: 125 ELTERTYLVVGNLHMDIMKHKVYRDGKAILLQPREFHLLEYLMRHANKVVTRTMLLENVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D + NVV+ HISKLR+KL + + R GY + Sbjct: 185 D-YDFDPQTNVVDVHISKLRQKLDIDSLPPMLKTIRNAGYML 225 >gi|163748837|ref|ZP_02156089.1| osmolarity response regulator [Shewanella benthica KT99] gi|161331611|gb|EDQ02416.1| osmolarity response regulator [Shewanella benthica KT99] Length = 241 Score = 134 bits (337), Expect = 8e-30, Method: Composition-based stats. Identities = 36/229 (15%), Positives = 84/229 (36%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ + G + + E + L + ++ L GE L Sbjct: 8 ILVVDDDMRLRALLERYLMEQGYQVRSAANSEQMDRLLERENFHLLVLDLML--PGEDGL 65 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112 + R +R +P+I ++ + + G DD + KP + RE + + Sbjct: 66 SICRRLRQQGNTIPIIMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQS 125 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + G + R+ E L E +L+ L+++ + +++ + Sbjct: 126 KDVPGAPTQQEEEVTFGEFTLNLATREMYHGEEAISLTSGEFAVLKVLVSHPREPLSRDK 185 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 + + G D + E ++ +S+LR+ + + + LGY Sbjct: 186 LMNLARGR-DYSALERSIDVQVSRLRRLIEKDPATPRYIQTVWGLGYVF 233 >gi|153853751|ref|ZP_01995107.1| hypothetical protein DORLON_01098 [Dorea longicatena DSM 13814] gi|149753501|gb|EDM63432.1| hypothetical protein DORLON_01098 [Dorea longicatena DSM 13814] Length = 240 Score = 134 bits (337), Expect = 8e-30, Method: Composition-based stats. Identities = 48/232 (20%), Positives = 84/232 (36%), Gaps = 13/232 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + L +G + D+ ++ L Sbjct: 6 ILVVDDNKEIVYSISELLKYEGYETLKAYDGMEALDIMERENVDLILLDVM--MPRLNGL 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 +R S++P+I +S + G DD + KP + E++ARV A RR + Sbjct: 64 SALMKLREKSRIPVIILSAKTEESDKVSGLTLGADDYIEKPYNPAELIARVKAHLRRYRA 123 Query: 122 SNNRAETGPIRVFSD----------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + R V+GE L E +ILE LMA+ G+ Sbjct: 124 WSGGETEKKKDPDQIVNGGLVLDKKQRVIFVEGEEVHLTATEYKILELLMAHPGQVFPAE 183 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 QI+ ++ + EN V HI +R+K+ + V +GY ++ Sbjct: 184 QIYENVWQETADYTVENTVMVHIRHIREKVEIDAKKPRYVKVVWGIGYKMEK 235 >gi|27382572|ref|NP_774101.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] gi|27355744|dbj|BAC52726.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] Length = 243 Score = 134 bits (337), Expect = 8e-30, Method: Composition-based stats. Identities = 51/225 (22%), Positives = 89/225 (39%), Gaps = 14/225 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L+DD ++D +G + S D+ ++ GE Sbjct: 23 LLLVDDDRRIRDLLSRFLAGEGYRVSTAASASDARSKLMGLHFDLLILDVM--MPGETGF 80 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 +L R IR S VP++ ++ + ++ G DD V KP RE+ R+ I +R Sbjct: 81 DLARFIRTSSSVPIVMLTARHEAEARIEGLQIGADDYVAKPFEPRELALRINNILKRAAP 140 Query: 122 SNNRAE-----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 A GP D + EV L RER +L L G+ V ++ + Sbjct: 141 PPQAAMVEKIAFGPYVYHLDRGELRQGEEVIHLTDREREMLRILSETPGETVPRSAL--- 197 Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + +V E V+ I++LR+K+ + + + R +GY + Sbjct: 198 ---TGNGSVNERAVDVQINRLRRKIETDPANPLFLQAVRGIGYRL 239 >gi|332969535|gb|EGK08554.1| transcriptional regulatory protein OmpR [Desmospora sp. 8437] Length = 245 Score = 134 bits (337), Expect = 8e-30, Method: Composition-based stats. Identities = 37/224 (16%), Positives = 85/224 (37%), Gaps = 10/224 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + ++ + + + ++ + E Sbjct: 24 LVVDDDQSIVELLRDFLENENFRVITACDSAQAWAVFEQSTIHCLILDIM--MPEQNGFE 81 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARV----AAIYRR 118 L R IRA S VP++ +S + G DD + K EI+ARV + Sbjct: 82 LCRRIRAKSNVPILFLSARSDDVDKIRGLTLGGDDYIVKTASPGEIVARVKAVLRRSASQ 141 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++ + G I++ R+ V+ + L +E +L + + Q+ + + Sbjct: 142 QQMEERILDYGRIKINLSTREVLVEEKKVVLTPKEYELLRLFAEHPRHVFSYEQLLAKFW 201 Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 D +++ + H+S+LR+K+ + + + +GY + Sbjct: 202 ---DGVGDKHTIRVHLSRLREKIESDPNHPQYLVNVWGVGYRFE 242 >gi|297243563|ref|ZP_06927494.1| response regulator (CheY receiver/winged-helix DNA-binding) [Gardnerella vaginalis AMD] gi|296888314|gb|EFH27055.1| response regulator (CheY receiver/winged-helix DNA-binding) [Gardnerella vaginalis AMD] Length = 246 Score = 134 bits (337), Expect = 8e-30, Method: Composition-based stats. Identities = 49/233 (21%), Positives = 94/233 (40%), Gaps = 17/233 (7%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 V++DD +++ +A G +E S + ++ ++ L Sbjct: 9 IVVVDDEPSIRELLVASLHFAGFEVETAASGSEAVEVIERVNPNLIVMDVML--PDIDGF 66 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPI---HHREILARVAAIYR 117 + R IR + P++ ++ Q + G DD V KP + + + Sbjct: 67 TVTRRIRQNGIKVPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRRTQ 126 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + + + D D G L E ++L YLM N G+ ++K+QI + + Sbjct: 127 EPDEETHIIKVADLEINEDSHDVTRCGMPIELSPTEYKLLHYLMDNEGRVLSKSQILNHV 186 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-----NKLGF-----DPVDSKRFLGYSI 220 + +D + +VES+IS LRKK+ + G +++KR +GY I Sbjct: 187 W-QYDWGGDAAIVESYISYLRKKIDGIEITDDSGKPQKVVPLIETKRGIGYMI 238 >gi|167561696|ref|ZP_02354612.1| two component transcriptional regulator, winged helix family protein [Burkholderia oklahomensis EO147] gi|167568932|ref|ZP_02361806.1| two component transcriptional regulator, winged helix family protein [Burkholderia oklahomensis C6786] Length = 250 Score = 134 bits (337), Expect = 8e-30, Method: Composition-based stats. Identities = 53/225 (23%), Positives = 94/225 (41%), Gaps = 11/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++ +D +++ DG G +++ + + S D+ ++ L G V Sbjct: 6 ILIAEDDSILADGLTRSLRQSGYAVDHVRNGAEADTALSMQTFDLLILDLGLPKMPGLDV 65 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119 L R +S +P++ ++ S+ + D G DD + KP E+ ARV A R Sbjct: 66 LRRLRA--RNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 123 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI-- 177 G + GR V L RE +LE L+ G+ V+K Q+ + Sbjct: 124 GGGPTVVRHGSLSFDQVGRIACANDRVLDLSARELGLLEVLLQRIGRLVSKEQLVDHLCE 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +G E V N +E ++ +LRKK+ + + R LGY ++ Sbjct: 184 WG---EEVSNNAIEVYVHRLRKKIEPSG--VRITTVRGLGYCLEK 223 >gi|120556645|ref|YP_960996.1| two component transcriptional regulator [Marinobacter aquaeolei VT8] gi|120326494|gb|ABM20809.1| two component transcriptional regulator, winged helix family [Marinobacter aquaeolei VT8] Length = 226 Score = 134 bits (337), Expect = 8e-30, Method: Composition-based stats. Identities = 44/222 (19%), Positives = 94/222 (42%), Gaps = 7/222 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++I+D V + + + ++ + + +S D+ ++ L G L Sbjct: 4 LVIEDDRDVANYLLKGLRESDFVVDHAADGKEGMMMAASEEYDIMIVDRML--PGMDGLS 61 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118 + + +RA P++ +S + ++ G DD + KP E + + R+ Sbjct: 62 IIKTVRATGNQTPVLILSALGDVDDRVEGLRGGGDDYLTKPFSFTELLARIESLIRRNRQ 121 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + + + R + G+ + RE R+LEYLM N G+ V +T + ++ Sbjct: 122 AAETETVLKVADLEMDLLARTVKRAGQNIDVQPREFRLLEYLMRNAGQVVTRTMLLEKVW 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + NV++ HIS+LR K+ + + + R GY + Sbjct: 182 D-YHFDPQTNVIDVHISRLRAKIDKEFDTPLLQTVRGAGYML 222 >gi|322373203|ref|ZP_08047739.1| DNA-binding response regulator [Streptococcus sp. C150] gi|321278245|gb|EFX55314.1| DNA-binding response regulator [Streptococcus sp. C150] Length = 226 Score = 134 bits (337), Expect = 9e-30, Method: Composition-based stats. Identities = 40/220 (18%), Positives = 85/220 (38%), Gaps = 6/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D +++ + G + + + ++ L Sbjct: 4 ILLVEDDEVIRQQVKKMLEQWGYEVVLVEDFMEVLSIFVKEEPHLVLMDIGLPL--FNGY 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR---EILARVAAIYRR 118 + IR S+VP++ +S + + G DD V KP + + Sbjct: 62 HWCQEIRKVSKVPIMFLSSRDQAMDIVMAINMGGDDFVTKPFDQNVLLAKIQGLLRRSYE 121 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + E + + D QGEV L + E +IL+ L G V++ + ++ Sbjct: 122 FGKDQSLLEYRGVILNLKAMDLVYQGEVVSLTKNEFQILQVLFERAGNIVSREDLMKELW 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 D +++N + ++++LRKKL D +++K+ +GY Sbjct: 182 -NSDFFIDDNTLSVNVARLRKKLEAVGLKDFIETKKGVGY 220 >gi|322434161|ref|YP_004216373.1| two component transcriptional regulator, winged helix family [Acidobacterium sp. MP5ACTX9] gi|321161888|gb|ADW67593.1| two component transcriptional regulator, winged helix family [Acidobacterium sp. MP5ACTX9] Length = 226 Score = 134 bits (337), Expect = 9e-30, Method: Composition-based stats. Identities = 39/221 (17%), Positives = 90/221 (40%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D V + +++ L + D+ ++ L Sbjct: 3 ILVVEDEPKVSSFVQRGLVAERYAVDVSADGREGLELAQAFPYDLIILDMML--PRMDGG 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE-ILARVAAIYRRL 119 E+ + IR + P++ ++ S++ + F++G DD + KP E ++ A + R Sbjct: 61 EILQRIRRTNTCVPVLMLTARDSVEDKVRMFENGADDYLTKPFAFAELLVRSKALLRRGP 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++ G + + + + G+ L +E +LEYLM N + +++ I ++ Sbjct: 121 VNRSSTMTVGELELDRLTQQVKRAGKRIELTAKEYSLLEYLMQNAERVLSRNMIIEHVWD 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 N+V+ ++ LR K+ + + + R GY I Sbjct: 181 QS-FDGITNIVDVYVRHLRAKVDDGHIIKLIRTVRGSGYMI 220 >gi|299144284|ref|ZP_07037364.1| DNA-binding response regulator VncR [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518769|gb|EFI42508.1| DNA-binding response regulator VncR [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 217 Score = 134 bits (337), Expect = 9e-30, Method: Composition-based stats. Identities = 47/220 (21%), Positives = 102/220 (46%), Gaps = 7/220 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++++G A + G ++ D++ + + L Sbjct: 3 ILVVEDDQMIREGISAYLSEFGYITIEAKDGREALSKFNN---DINLVILDIQIPFINGL 59 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR S++P++ ++ + + +D F + D + KP + ARV ++ ++ Sbjct: 60 EVLREIRKKSKLPILILTAFSDEEYKIDAFTNLADGYIEKPFSLPVLKARVDSLIKKNFG 119 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + E I V ++ GE + +E IL+YL+ N G+ + + QI ++ Sbjct: 120 LIEKFEYKNIEVNFTSYTAKINGESIDINAKELEILKYLLDNEGQALTRMQIIDNVWKET 179 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +E + V++ +I +LRKKL G D + + R +GY ++ Sbjct: 180 EEIPYDRVIDVYIKELRKKL----GLDCITTIRNVGYKLE 215 >gi|228901257|ref|ZP_04065454.1| Two-component response regulator vanRB [Bacillus thuringiensis IBL 4222] gi|228921393|ref|ZP_04084716.1| Two-component response regulator vanRB [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228939836|ref|ZP_04102413.1| Two-component response regulator vanRB [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228965658|ref|ZP_04126739.1| Two-component response regulator vanRB [Bacillus thuringiensis serovar sotto str. T04001] gi|228972725|ref|ZP_04133324.1| Two-component response regulator vanRB [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228979309|ref|ZP_04139646.1| Two-component response regulator vanRB [Bacillus thuringiensis Bt407] gi|229045415|ref|ZP_04192076.1| Two-component response regulator vanRB [Bacillus cereus AH676] gi|229110168|ref|ZP_04239744.1| Two-component response regulator vanRB [Bacillus cereus Rock1-15] gi|229150932|ref|ZP_04279143.1| Two-component response regulator vanRB [Bacillus cereus m1550] gi|229190816|ref|ZP_04317809.1| Two-component response regulator vanRB [Bacillus cereus ATCC 10876] gi|228592686|gb|EEK50512.1| Two-component response regulator vanRB [Bacillus cereus ATCC 10876] gi|228632492|gb|EEK89110.1| Two-component response regulator vanRB [Bacillus cereus m1550] gi|228673360|gb|EEL28628.1| Two-component response regulator vanRB [Bacillus cereus Rock1-15] gi|228724953|gb|EEL76249.1| Two-component response regulator vanRB [Bacillus cereus AH676] gi|228780417|gb|EEM28647.1| Two-component response regulator vanRB [Bacillus thuringiensis Bt407] gi|228786940|gb|EEM34920.1| Two-component response regulator vanRB [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228794066|gb|EEM41588.1| Two-component response regulator vanRB [Bacillus thuringiensis serovar sotto str. T04001] gi|228819767|gb|EEM65815.1| Two-component response regulator vanRB [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228838166|gb|EEM83484.1| Two-component response regulator vanRB [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228858375|gb|EEN02838.1| Two-component response regulator vanRB [Bacillus thuringiensis IBL 4222] Length = 214 Score = 134 bits (337), Expect = 9e-30, Method: Composition-based stats. Identities = 47/220 (21%), Positives = 89/220 (40%), Gaps = 9/220 (4%) Query: 5 IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64 ++D +++ ++ + + D+ ++ E+ Sbjct: 2 VEDDQEIQELIKQFLMTQHYTVVVASDGLEGMTQFNKQSFDLILLDVM--MPNLNGFEVS 59 Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRLKVS 122 ++IR+ S VP+I ++ + + FD G+DD + KP ++ RV A K Sbjct: 60 KMIRSQSNVPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSYDKNV 119 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 NN +R+ D V L +E IL+ L N K + + I ++G +D Sbjct: 120 NNHLIFKEVRIDVDAYRVYVNDVEIILTTKEFEILQLLFQNERKVLTRENIVEKVWG-YD 178 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 E ++++HI LRKKL + + + +GY ID Sbjct: 179 YFGETRIIDTHIKNLRKKL----AIPYIKTIKGIGYKIDE 214 >gi|168183942|ref|ZP_02618606.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|237795825|ref|YP_002863377.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] gi|182673003|gb|EDT84964.1| DNA-binding response regulator [Clostridium botulinum Bf] gi|229263627|gb|ACQ54660.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] Length = 226 Score = 134 bits (337), Expect = 9e-30, Method: Composition-based stats. Identities = 41/223 (18%), Positives = 86/223 (38%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G + N+ + D+ ++ L L Sbjct: 4 ILIVEDEEKLSRFIELELKHEGYEIVKANNGRTGLEIAEKGEIDLILLDIML--PEINGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117 E+ R +R S +P+I ++ ++ + D+G DD + KP I + Sbjct: 62 EVLRRLRRTSDIPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKKRIV 121 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 +K + G + + L RE +L+ LM N+ + ++ + + Sbjct: 122 TVKKDEDIIRCGLLSLDKIRHKVMYDSTEIELTNREFNLLQILMENKNIVLTRSILMEKV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G +D E NV++ +I LR K+ + + + R +GY I Sbjct: 182 CG-YDYLGETNVIDVYIRFLRTKIDDAFKVKIITTVRGVGYVI 223 >gi|153009992|ref|YP_001371207.1| two component transcriptional regulator [Ochrobactrum anthropi ATCC 49188] gi|151561880|gb|ABS15378.1| two component transcriptional regulator, winged helix family [Ochrobactrum anthropi ATCC 49188] Length = 255 Score = 134 bits (337), Expect = 9e-30, Method: Composition-based stats. Identities = 47/222 (21%), Positives = 86/222 (38%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D F + G S + E L + DV ++ L L Sbjct: 23 ILVIEDDREAARYLEKAFTEAGHSADIAGDGETGYTLAENGSYDVLVVDRML--PKRDGL 80 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118 + +RA P++ +S + + +G DD + KP E+ V Sbjct: 81 SVVAGLRARGMETPVLILSALGEVDDRVTGLRAGGDDYLTKPYAFSELLARVEVLQRRSS 140 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + ++ G + + Q L RE R+LEYLM + G+ V +T + ++ Sbjct: 141 PREADTIYRVGDLELDRLAHTARRQDVDITLQPREFRLLEYLMRHAGQVVTRTMLLENVW 200 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + NV++ HIS+LR K+ + + R GY + Sbjct: 201 D-YHFDPQTNVIDVHISRLRSKIEKGFDGPLLHTVRGAGYML 241 >gi|270208660|ref|YP_003329431.1| putative response regulator protein [Sinorhizobium meliloti] gi|76880934|gb|ABA56104.1| putative response regulator protein [Sinorhizobium meliloti] Length = 246 Score = 134 bits (337), Expect = 9e-30, Method: Composition-based stats. Identities = 43/230 (18%), Positives = 84/230 (36%), Gaps = 14/230 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + ++ F ++G + + DV ++ L GE L Sbjct: 11 ILVVDDDSRIRQMLSRYFEEEGYRVSLAGDGQEMRECLDKQPVDVILLDLML--PGEDGL 68 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILAR 111 L R IRA S VP+I ++ + + + G DD + KP H R Sbjct: 69 TLARDIRARSDVPIIMLTGRSDVVDRVVGLEVGADDYIAKPFHLREVLARVRGVLRRRQP 128 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + + + G + PL E +L L+ + + + + Sbjct: 129 RRSPEVGDQQTEIYCFEGLRLDVGSRQLLSDDEREVPLTTGEFDMLCVLVKHAARVLQRE 188 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + G EA + +++ I++LR+K+ + + S R +GY Sbjct: 189 FLMDLTRGRNLEAFD-RSIDAQIARLRRKIERDHTRPALIKSVRGVGYVF 237 >gi|260772762|ref|ZP_05881678.1| two component response regulator [Vibrio metschnikovii CIP 69.14] gi|260611901|gb|EEX37104.1| two component response regulator [Vibrio metschnikovii CIP 69.14] Length = 225 Score = 134 bits (337), Expect = 9e-30, Method: Composition-based stats. Identities = 44/224 (19%), Positives = 95/224 (42%), Gaps = 5/224 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D D + G ++ L + D+ ++ L G Sbjct: 3 ILIVEDEKKTGDYLQQGLSEAGFVVDLVRDGIDGLHLALTGEYDLLILDVML--PGLDGW 60 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + + IR A +P++ ++ +++ + + G DD + KP E+LARV + RR K Sbjct: 61 GVLKTIRRAEYHMPVLFLTARDAVEDRVHGLELGADDYLIKPFAFSELLARVRTLSRRGK 120 Query: 121 VSNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 R G+ L +E +LE L+ RG+ ++++ I S ++ Sbjct: 121 TQKIDHLQAADLALDLVKRRVIRNGQRIDLTAKEFILLELLLRRRGEVLSRSFIASQVWD 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 + + + NV+E + +LR K+ + + + R +GY ++ + Sbjct: 181 M-NFDSDTNVIEVAVRRLRAKVDDPFEPKLIRTVRGMGYVLEVD 223 >gi|116619216|ref|YP_821372.1| two component transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116222378|gb|ABJ81087.1| two component transcriptional regulator, winged helix family [Candidatus Solibacter usitatus Ellin6076] Length = 228 Score = 134 bits (337), Expect = 9e-30, Method: Composition-based stats. Identities = 45/224 (20%), Positives = 89/224 (39%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ A + + E ++ ++ + G L Sbjct: 6 ILVVDDDPQIRRVMKATLVGHSYEVIEARTGEDALEALPHEMPNLVLLD--MNMPGMGGL 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117 E R IR+ + +P+I +S + + + D+G DD V KP I A + Sbjct: 64 ETCRAIRSGTDIPVIILSVRNTEKDKVAALDAGADDYVTKPFGIEELLARIRAALRRSPS 123 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + + D R G+ L +E +L YL+A+ G+ V ++ A+ Sbjct: 124 GPDGGPHGFTASNLEIDFDARRVHANGKDVRLTPKEFEMLRYLVAHSGRPVTHRELLQAV 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 +G D E + I++LRKK+ N + ++ ++GY Sbjct: 184 WG-PDYGDEPEYLRVFINQLRKKIEANPSKPKFILTEPWVGYRF 226 >gi|317122445|ref|YP_004102448.1| transcriptional regulator [Thermaerobacter marianensis DSM 12885] gi|315592425|gb|ADU51721.1| two component transcriptional regulator, winged helix family [Thermaerobacter marianensis DSM 12885] Length = 258 Score = 134 bits (337), Expect = 9e-30, Method: Composition-based stats. Identities = 55/231 (23%), Positives = 95/231 (41%), Gaps = 13/231 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSS---AREDVSAIEAFLIGKGEK 59 +++DD A ++ G ++ + V+A+ L+ G Sbjct: 28 LVVDDEADIRRLLRLYLKRAGFAVVEAGDGVSALAAFDALVRQGRAVAAVVLDLMLPGLD 87 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 E+ +R SQVP++ ++ + L F G DD V KP RE++AR+ A+ RR Sbjct: 88 GWEVCERLRERSQVPILMLTARGEIHERLHGFHLGADDYVVKPFDPREVVARIRALSRRA 147 Query: 120 KVSN---------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + G + + R V G L R E +L L +RG+ +++ Sbjct: 148 APAPGGVRPAGAEPALHFGRLTIDPGARTVTVDGHPVSLTRTEFDLLYTLAQHRGQTLSR 207 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 QI + G D +E V++SHI LR+KL + + +GY + Sbjct: 208 QQILDRLRG-GDYFGDERVIDSHIRNLREKLEPFGLRKLIATVWGVGYRFE 257 >gi|298249642|ref|ZP_06973446.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297547646|gb|EFH81513.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 238 Score = 134 bits (337), Expect = 9e-30, Method: Composition-based stats. Identities = 50/228 (21%), Positives = 90/228 (39%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L +D ++D G + ++ L + ++ L Sbjct: 8 ILLAEDEEALRDFVSRNLRARGFEVLEASNGLEAMALWQQEAPHLLILDVM--MPRMDGL 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + +R S VP+I ++ S + + D G DD + KP E+LARV A RR Sbjct: 66 EVCQRVRQSSTVPIIILTALDSERDKVATLDLGADDYLTKPFGVEELLARVRAALRRTNW 125 Query: 122 SN--------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 N G + V G ++GE L E +L+ L+ N GK + + Sbjct: 126 EETGSLPAVSNAKHFGELEVDLAGHVVRLRGEEIRLSPTEFALLKQLVTNAGKVLTHRML 185 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 +I+G + E + +I++LR KL + + ++ +GY Sbjct: 186 LQSIWG-PEYGDEAEYLRVYINRLRHKLETDSANPRYLLTEPGVGYRF 232 >gi|284042188|ref|YP_003392528.1| two component transcriptional regulator [Conexibacter woesei DSM 14684] gi|283946409|gb|ADB49153.1| two component transcriptional regulator, winged helix family [Conexibacter woesei DSM 14684] Length = 224 Score = 134 bits (337), Expect = 9e-30, Method: Composition-based stats. Identities = 45/220 (20%), Positives = 91/220 (41%), Gaps = 5/220 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + D G + E ++ D + ++ L +E Sbjct: 6 LVVDDELQILRALKVILRDAGYEPVAVATAEEALDAAATRPPDAAIVDLVL--PDGDGIE 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + + +RA S++P++ +S + + ++G DD V KP RE++AR+AA RR + Sbjct: 64 VCKQLRAWSEMPILVLSAIGEEEQKVRALEAGADDYVTKPFGARELVARLAAALRRAGRT 123 Query: 123 NNRAETGPI--RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + R +GE L E +L L NRG+ + + + ++G Sbjct: 124 ADEPTIAVDGLELDLARRVVRREGEEVHLTPIEYDLLRVLARNRGRLMTHRALLTEVWG- 182 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + +HI+ LR K+ + + +GY Sbjct: 183 PAYGEDIRTLRTHIANLRHKIEPAGRPRFIRTDPGVGYRF 222 >gi|256370488|ref|YP_003107999.1| DNA-binding response regulator BvrR, putative [Brucella microti CCM 4915] gi|256000651|gb|ACU49050.1| DNA-binding response regulator BvrR, putative [Brucella microti CCM 4915] Length = 239 Score = 134 bits (337), Expect = 9e-30, Method: Composition-based stats. Identities = 43/230 (18%), Positives = 80/230 (34%), Gaps = 14/230 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 L+DD + +G +E + + +++ + + Sbjct: 10 IALVDDDRNILTSVSIALESEGYRVETYTDGASALDGLMARPPNLAIFDI--KMPRMDGM 67 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILAR 111 EL R +R S +P+I ++ L G DD + KP R +A Sbjct: 68 ELLRRLRQKSDLPVIFLTSKDDEIDELFGLKMGADDFITKPFSQRLLVERVKAVLRRVAA 127 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + E G + + + +GE L E IL L G ++ Sbjct: 128 RDGTAKPAGQQAKSLERGQLVMDQERHTCTWKGEPVTLTVTEFLILHSLAQRPGVVKSRD 187 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + A Y V++ ++SHI +LRKK + F+ +++ +GY Sbjct: 188 ALMDAAYDEQIY-VDDRTIDSHIKRLRKKFKAVDDSFEMIETLYGVGYRF 236 >gi|148545276|ref|YP_001265378.1| two component heavy metal response transcriptional regulator [Pseudomonas putida F1] gi|167031040|ref|YP_001666271.1| two component heavy metal response transcriptional regulator [Pseudomonas putida GB-1] gi|170719204|ref|YP_001746892.1| two component heavy metal response transcriptional regulator [Pseudomonas putida W619] gi|148509334|gb|ABQ76194.1| two component heavy metal response transcriptional regulator, winged helix family [Pseudomonas putida F1] gi|166857528|gb|ABY95935.1| two component heavy metal response transcriptional regulator, winged helix family [Pseudomonas putida GB-1] gi|169757207|gb|ACA70523.1| two component heavy metal response transcriptional regulator, winged helix family [Pseudomonas putida W619] Length = 225 Score = 134 bits (337), Expect = 9e-30, Method: Composition-based stats. Identities = 45/224 (20%), Positives = 93/224 (41%), Gaps = 6/224 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ +D + + G +++ + S D+ ++ G Sbjct: 3 LLVAEDEPKIGAYLQQGLTEAGFTVDRVVTGTDALQYALSEAYDLLILDVM--MPGLDGW 60 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118 E+ R++RA +VP++ ++ + + + G DD + KP E+LARV Sbjct: 61 EVLRMVRAAGKEVPVLFLTARDGVDDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGS 120 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + + V R G+ L +E +LE LM RG+ + K+ I S ++ Sbjct: 121 SGYAQTTMKMADLEVDLLKRRATRNGKRIDLTAKEFSLLELLMRRRGEVLPKSLIASQVW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + + + NV+E + +LR K+ + + + R +GY +D Sbjct: 181 DM-NFDSDTNVIEVAVRRLRAKIDDDFAPKLIHTVRGMGYLMDV 223 >gi|326404574|ref|YP_004284656.1| putative two-component response regulator [Acidiphilium multivorum AIU301] gi|325051436|dbj|BAJ81774.1| putative two-component response regulator [Acidiphilium multivorum AIU301] Length = 239 Score = 134 bits (337), Expect = 9e-30, Method: Composition-based stats. Identities = 42/229 (18%), Positives = 87/229 (37%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ + + + ++ L GE + Sbjct: 7 ILVVDDDREIRELLARFLERQRFRVTAVRDAREARRAYLNGHYQLVVLDLML--PGESGI 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R +R SQVP+I ++ + + G DD V KP + RE++AR+ A+ RR+ Sbjct: 65 DFARWLRGESQVPIIMLTALGEEPDRIIGLELGADDYVTKPFNPRELVARIRAVLRRVGE 124 Query: 122 SNNRAETGPIRVFSDGRDP---------EVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + R++ + G PL E +L L+ + + + Sbjct: 125 NETPGRESSARLYRFAGWVLETSRRRLLDPHGVEVPLTGGEYDLLLALLDRPNRVLTRDM 184 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 + + G + ++ IS+LR+KL + + + R GY + Sbjct: 185 LLDLLRGRQAGPFD-RAIDVAISRLRRKLEDDGRHAQIIKTVRGGGYVL 232 >gi|116050809|ref|YP_790370.1| putative two-component response regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|296388712|ref|ZP_06878187.1| putative two-component response regulator [Pseudomonas aeruginosa PAb1] gi|115586030|gb|ABJ12045.1| putative two-component response regulator [Pseudomonas aeruginosa UCBPP-PA14] Length = 226 Score = 134 bits (337), Expect = 9e-30, Method: Composition-based stats. Identities = 42/224 (18%), Positives = 97/224 (43%), Gaps = 6/224 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G +++ + E L D+ ++ L G Sbjct: 3 LLIVEDEPRIGQYLRQGLAEAGFAVDLSDDGNEGEQLALGGDYDLLILDVML--PGRDGW 60 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118 ++ R +R +P++ ++ +++ + + G DD + KP E+LARV Sbjct: 61 QILRSVRDAGMTIPVLFLTARDAVEDRVRGLEQGADDYLVKPFAFVELLARVRTLLRRGS 120 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++ + + + R + QG+ L +E +LE L+ G+ + K+ I S ++ Sbjct: 121 QQLQETTLQLADLELDLLRRRVQRQGKRIDLTAKEFALLELLLRRSGEVLPKSLIASQVW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + + + NV+E I +LR K+ + + + R +GY ++ Sbjct: 181 DM-NFDSDTNVIEVAIRRLRAKVDDDYPQRLIHTVRGMGYVLEE 223 >gi|27364306|ref|NP_759834.1| osmolarity response regulator [Vibrio vulnificus CMCP6] gi|320157697|ref|YP_004190076.1| two-component system response regulator OmpR [Vibrio vulnificus MO6-24/O] gi|27360424|gb|AAO09361.1| Two-component system response regulator OmpR [Vibrio vulnificus CMCP6] gi|319933009|gb|ADV87873.1| two-component system response regulator OmpR [Vibrio vulnificus MO6-24/O] Length = 239 Score = 134 bits (337), Expect = 9e-30, Method: Composition-based stats. Identities = 41/229 (17%), Positives = 91/229 (39%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++ + G + + E + L + + ++ L GE L Sbjct: 7 ILVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLML--PGEDGL 64 Query: 62 ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112 + R + A++ +P++ ++ + + G DD + KP + RE + + Sbjct: 65 SICRRLRNANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQT 124 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + E G R+ R+ E PL E +L+ L+ N + +++ + Sbjct: 125 IELPGAPSAEEKIVEFGEFRLNLGTREMFRGDEPMPLTSGEFAVLKSLVTNAREPMSRDK 184 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220 + + G + + E ++ IS+LR+ L + + + LGY Sbjct: 185 LMNMARGR-EYSAMERSIDVQISRLRRMLEEDPSKPRYIQTVWGLGYVF 232 >gi|325523281|gb|EGD01637.1| two component transcriptional regulator [Burkholderia sp. TJI49] Length = 240 Score = 134 bits (337), Expect = 9e-30, Method: Composition-based stats. Identities = 47/228 (20%), Positives = 89/228 (39%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A + D D+ + L D ++ L G L Sbjct: 7 ILIVEDDADIADVLSLHLRDERYEVVHSADGAEGLRLLEQGGWDALILDLML--PGVDGL 64 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARVA 113 E+ R RA P+I S S + + G DD + KP + +L RV Sbjct: 65 EICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVD 124 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 A+ R ++ + + + R+ V G L RE +L + + GK ++ + Sbjct: 125 ALARDSRIDAGTLDIAGLSIDPIAREASVDGARIDLTPREFDLLYFFARHPGKVFSRMDL 184 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 +A++G + E+ V +HI++LR K+ + + + GY + Sbjct: 185 LNAVWG-YRHEGYEHTVNTHINRLRAKIEADPAEPVRILTVWGRGYKL 231 >gi|325293564|ref|YP_004279428.1| two component response regulator [Agrobacterium sp. H13-3] gi|325061417|gb|ADY65108.1| two component response regulator [Agrobacterium sp. H13-3] Length = 237 Score = 134 bits (337), Expect = 9e-30, Method: Composition-based stats. Identities = 41/224 (18%), Positives = 83/224 (37%), Gaps = 12/224 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A +++ GD G + R D+ ++ GE L Sbjct: 18 LLIVDDDARIRNLLQRFLGDKGYRISVAADAAEARRKMVGIRFDLLILDVM--MPGENGL 75 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117 L R + + VP+I ++ + + ++G DD + KP R I + Sbjct: 76 SLTRSLNENKSVPVILLTARSEADSRIAGLEAGADDYLAKPFDPRELVLRINNILRRNTS 135 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + GP ++ E L RE+ I+ G + + ++ A Sbjct: 136 PDTPKIEQIMFGPYSFSIPRKELRRGAETIRLTDREQEIMLLFALRAGDTIPRHELVEA- 194 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 + V E ++ I++LR+K+ + + + R +GY + Sbjct: 195 ----ESEVGERTIDVQINRLRRKIEDDPANPVYLQTVRGIGYRL 234 >gi|311106506|ref|YP_003979359.1| response regulator 10 [Achromobacter xylosoxidans A8] gi|310761195|gb|ADP16644.1| response regulator 10 [Achromobacter xylosoxidans A8] Length = 233 Score = 134 bits (337), Expect = 9e-30, Method: Composition-based stats. Identities = 44/222 (19%), Positives = 86/222 (38%), Gaps = 7/222 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L++D + G ++ + R D + L+ G L+ Sbjct: 5 LLVEDDPKLSRLIAQFLEQHGFNVAQAYRGDHAVEAFR--RHDPAITILDLMLPGRDGLQ 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR---EILARVAAIYRRL 119 + R +RA S P++ ++ + +SG DD V KP+ R + + + +L Sbjct: 63 VCRDLRAFSSAPILMLTAREDDLDQILGLESGADDYVIKPVEPRVLLARIRALLRRHSQL 122 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 R E GP+ + R G L E +L L + G+ + + + +A+ G Sbjct: 123 DEPPERLEFGPLVIDRRTRAVVHAGSEVDLTTMEFEMLWALASQAGQVLTRDDLLNAVRG 182 Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 + + + V+ +SKLR+KL + + + GY Sbjct: 183 I-EFNGLDRSVDVCVSKLRRKLDDDPRDPARIKTVWGKGYLF 223 >gi|322435322|ref|YP_004217534.1| two component transcriptional regulator, winged helix family [Acidobacterium sp. MP5ACTX9] gi|321163049|gb|ADW68754.1| two component transcriptional regulator, winged helix family [Acidobacterium sp. MP5ACTX9] Length = 239 Score = 134 bits (337), Expect = 9e-30, Method: Composition-based stats. Identities = 42/226 (18%), Positives = 94/226 (41%), Gaps = 9/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++D A + G ++ + +++ + ++ + G L Sbjct: 10 IFVLEDDADISRLVQYHLESAGFTVRPYAAIQQIVSDAERQPPSLFLLDIMV--PGGDGL 67 Query: 62 ELPRIIRAH---SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IY 116 +L R +R + S VP+I ++ + + + G DD + KP RE++ARV A Sbjct: 68 DLCRRLRLNPTLSVVPIIFLTARAAENDRVQGLELGADDYITKPFATRELVARVKAVLRR 127 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + + I + + V+GE+ E R+L+YL + G+ ++ + A Sbjct: 128 FERPTTPSILKFEQIEIDAGAMQLRVKGELVTTTATEFRLLDYLARHPGRVFSRDHLLDA 187 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSID 221 ++G V V+ ++ ++R+K+ + + R GY + Sbjct: 188 VWG-DARFVTPRSVDVYVRRIREKIEEDAETPRYLKTMRGAGYRFE 232 >gi|317131537|ref|YP_004090851.1| two component transcriptional regulator, winged helix family [Ethanoligenens harbinense YUAN-3] gi|315469516|gb|ADU26120.1| two component transcriptional regulator, winged helix family [Ethanoligenens harbinense YUAN-3] Length = 247 Score = 134 bits (337), Expect = 9e-30, Method: Composition-based stats. Identities = 36/221 (16%), Positives = 81/221 (36%), Gaps = 6/221 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D A ++ +G L + + ++ G E Sbjct: 25 MIVEDNAEIRGIVTKYLDAEGYIPLFAKDGFEALALFAQRLVHLVLLDVM--MPGIDGFE 82 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA--AIYRRLK 120 + R +R S VP+I ++ L+ FD G DD V KP +E++ RV Sbjct: 83 VLRELRKISDVPVILLTARQEETDRLNGFDCGADDYVVKPFSLKELMKRVNALIRRVYHD 142 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + + + E +L+ + + G+ +++ Q+ +G Sbjct: 143 ADGIVYRYRDLSLHTRAMKLYKGDAEISITAAEYALLDAMFRHPGQVLSREQLIELAFGS 202 Query: 181 FDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 + ++S+I ++R+K+ + + +K GY Sbjct: 203 R-YEGYDRNIDSYIKRIRQKIEDDPKNPQILITKYGAGYRF 242 >gi|254713505|ref|ZP_05175316.1| Transcriptional regulatory protein chvI [Brucella ceti M644/93/1] gi|254716139|ref|ZP_05177950.1| Transcriptional regulatory protein chvI [Brucella ceti M13/05/1] gi|261217910|ref|ZP_05932191.1| regulatory protein BvrR [Brucella ceti M13/05/1] gi|261321240|ref|ZP_05960437.1| regulatory protein BvrR [Brucella ceti M644/93/1] gi|260922999|gb|EEX89567.1| regulatory protein BvrR [Brucella ceti M13/05/1] gi|261293930|gb|EEX97426.1| regulatory protein BvrR [Brucella ceti M644/93/1] Length = 239 Score = 134 bits (337), Expect = 9e-30, Method: Composition-based stats. Identities = 43/230 (18%), Positives = 80/230 (34%), Gaps = 14/230 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 L+DD + +G +E + + +++ + + Sbjct: 10 IALVDDDRNILTSVSIALESEGYRVETYTDGASALDGLMARPPNLAIFDI--KMPRMDGM 67 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILAR 111 EL R +R S +P+I ++ L G DD + KP R +A Sbjct: 68 ELLRHLRQKSDLPVIFLTSKDDEIDELFGLKMGADDFITKPFSQRLLVERVKAVLRRVAA 127 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + E G + + + +GE L E IL L G ++ Sbjct: 128 RDGTAKPAGQQAKSLERGQLVMDQERHTCTWKGEPVTLTVTEFLILHSLAQRPGVVKSRD 187 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + A Y V++ ++SHI +LRKK + F+ +++ +GY Sbjct: 188 ALMDAAYDE-QVYVDDRTIDSHIKRLRKKFKAVDDSFEMIETLYGVGYRF 236 >gi|149378109|ref|ZP_01895829.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Marinobacter algicola DG893] gi|149357594|gb|EDM46096.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Marinobacter algicola DG893] Length = 226 Score = 134 bits (337), Expect = 9e-30, Method: Composition-based stats. Identities = 44/222 (19%), Positives = 92/222 (41%), Gaps = 7/222 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++I+D V + + + ++ + + +S D+ ++ L G L Sbjct: 4 LVIEDDQDVANYLVKGLKESDFVVDHAADGKEGMMMAASEDYDIMIVDRML--PGMDGLS 61 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118 + + +RA P++ +S + ++ G DD + KP E + + R+ Sbjct: 62 IIKTVRATGNQVPVLILSALGDVDDRVEGLRGGGDDYLTKPFSFTELLARIESLVRRNRQ 121 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + + R + G + RE R+LEYLM N G+ V +T + ++ Sbjct: 122 SAETETVLRVADLEMDLLARTVKRAGHNIDVQPREFRLLEYLMRNAGQVVTRTMLLEKVW 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + NV++ HIS+LR K+ + + + R GY + Sbjct: 182 D-YHFDPQTNVIDVHISRLRAKIDKEFETPLLQTIRGAGYML 222 >gi|146308170|ref|YP_001188635.1| two component transcriptional regulator [Pseudomonas mendocina ymp] gi|145576371|gb|ABP85903.1| two component transcriptional regulator, winged helix family [Pseudomonas mendocina ymp] Length = 249 Score = 134 bits (337), Expect = 9e-30, Method: Composition-based stats. Identities = 44/228 (19%), Positives = 98/228 (42%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G+ + + + D+ ++ L GE L Sbjct: 8 ILIVEDDQRLAQLTREYLEGNGLRVAIEADGARAAARILAEQPDLVMLDLML--PGEDGL 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIY----- 116 + R +RA + P++ ++ + + G DD V KP+ R +LAR+ A+ Sbjct: 66 SICRKVRAGYKGPILMLTARTDDMDQVLGLEMGADDYVCKPVRPRVLLARIRALLRRREG 125 Query: 117 ---RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 R + R + GP+ + S R+ + + L E +L L N G+ +++ +I Sbjct: 126 SEAERDEGQPRRLQFGPLAIDSAMREAWLGEQGIELTSAEFDLLWLLAVNAGRILSREEI 185 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 F+++ G+ + ++ ++ IS++R K+ + + + R GY Sbjct: 186 FNSLRGI-EYDGQDRSIDVRISRIRPKIGDDPMHPRLIKTVRSKGYLF 232 >gi|50956446|gb|AAT90753.1| response regulator [Bifidobacterium animalis subsp. lactis] Length = 245 Score = 134 bits (337), Expect = 9e-30, Method: Composition-based stats. Identities = 53/233 (22%), Positives = 94/233 (40%), Gaps = 17/233 (7%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 V++DD +++ +A G +E S + S + D+ ++ L Sbjct: 9 IVVVDDEPSIRELLVASLHFAGYEVETAASGSEAIEVISRTKPDMIILDVML--PDIDGF 66 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPI---HHREILARVAAIYR 117 + R IR P++ ++ Q + G DD V KP + + R Sbjct: 67 TVTRRIRQEGITAPVLFLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRRTR 126 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + G + + D D G+ L E ++L YLM N G+ ++K QI + Sbjct: 127 EQVEDDPIIRVGDLEINEDSHDVTRAGQTIDLSPTEYKLLRYLMDNEGRVLSKAQILDHV 186 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFD----------PVDSKRFLGYSI 220 + +D + +VES+IS LRKK+ + D +++KR +GY I Sbjct: 187 W-QYDWGGDAAIVESYISYLRKKVDDVTVTDEDGSTHKVTPLIETKRGIGYMI 238 >gi|108757150|ref|YP_630995.1| DNA-binding response regulator PhoP2 [Myxococcus xanthus DK 1622] gi|9081855|gb|AAF82621.1|AF157830_2 PhoP2 response regulator [Myxococcus xanthus] gi|108461030|gb|ABF86215.1| DNA-binding response regulator PhoP2 [Myxococcus xanthus DK 1622] Length = 238 Score = 134 bits (337), Expect = 9e-30, Method: Composition-based stats. Identities = 50/225 (22%), Positives = 95/225 (42%), Gaps = 7/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A ++ G D+G + S E L D+ ++ L GE Sbjct: 14 ILIVEDDAHLRVGLRDNLLDEGYLVAEAPSTRDAERLLQERAFDLLILDVML--PGEDGY 71 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 R +R ++ ++ ++ L F+ G D + KP RE+LARV A+ RR Sbjct: 72 SFCRRLRTQGNKSMVLMLTARSLEDDILRGFEVGAQDYLTKPYRLRELLARVRALVRRSG 131 Query: 121 VSNNRAETGPIRVFS--DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + G V L R E +L +L+ ++ + + + +I A++ Sbjct: 132 TAPPEQMGFSSFTLDLGRRQVSRADGSVVELTRTEFDLLAFLLRHQDRALPRGEILDAVW 191 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSIDW 222 G D V+ V++ +S L+KKL + + R +GY ++ Sbjct: 192 GR-DVVVDPRTVDNFVSSLKKKLGWTSTSGFSIHTIRGVGYRMEV 235 >gi|311029174|ref|ZP_07707264.1| two component transcriptional regulator, winged helix family protein [Bacillus sp. m3-13] Length = 225 Score = 134 bits (337), Expect = 9e-30, Method: Composition-based stats. Identities = 51/222 (22%), Positives = 92/222 (41%), Gaps = 7/222 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++I+D + +G ++ L D+ ++ L G +E Sbjct: 5 LIIEDEKNLARFIELELQYEGFNVATSYDGREGLDLALKEDWDIILLDLML--PGLSGME 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IRA + P+I ++ S+ + DSG DD ++KP E+LAR+ A++RR++ Sbjct: 63 VCRRIRAAKETPIIMLTARDSVMDKVSGLDSGADDYMSKPFAIEELLARIRALFRRMEGK 122 Query: 123 NNRAETGPIRV----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 A D R E L +RE +L M N + + + + ++ Sbjct: 123 KEEAHNILSFRELKVDLDARTVTRMEEQIELTKREFDLLVVFMTNINRVLTRELLLDKVW 182 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 L A E NVV+ ++ LR K+ + + R GY + Sbjct: 183 ELGSYA-ETNVVDVYVRYLRNKIDKPSEESYIQTVRGTGYVM 223 >gi|294677778|ref|YP_003578393.1| KDP operon transcriptional regulatory protein KdpE [Rhodobacter capsulatus SB 1003] gi|294476598|gb|ADE85986.1| KDP operon transcriptional regulatory protein KdpE [Rhodobacter capsulatus SB 1003] Length = 228 Score = 134 bits (337), Expect = 9e-30, Method: Composition-based stats. Identities = 46/223 (20%), Positives = 90/223 (40%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ G + + + L +S + ++ L Sbjct: 4 LLVVDDDDQIQTMLRIALETAGYEIVAATTGQEAIRLAASIAPEAILLDLGL--PDRDGK 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + +RA S VP+I +S ++ D G DD + KP E+ AR+ A R Sbjct: 62 EVLKAVRAFSAVPVIVLSARDREAEKVEALDLGADDYLEKPFGISELQARLRAAARHATR 121 Query: 122 SNNRAET---GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + G + V + R + G+ L +E +L L+ N G+ V QI +A++ Sbjct: 122 AKGETTRLVLGALSVDLEKRLVQKDGQPVRLTPKEFALLSVLVRNPGRVVTHRQILTAVW 181 Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 G + + I +LR K+ + + ++ +GY + Sbjct: 182 GPAHHD-DTQYLRVFIGQLRAKIEPDPAAPVLIVTEPGVGYRL 223 >gi|288818738|ref|YP_003433086.1| two-component transcriptional regulator [Hydrogenobacter thermophilus TK-6] gi|288788138|dbj|BAI69885.1| two-component transcriptional regulator [Hydrogenobacter thermophilus TK-6] gi|308752325|gb|ADO45808.1| two component transcriptional regulator, winged helix family [Hydrogenobacter thermophilus TK-6] Length = 224 Score = 134 bits (337), Expect = 9e-30, Method: Composition-based stats. Identities = 43/219 (19%), Positives = 92/219 (42%), Gaps = 5/219 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L++D V + +G + + ++ L ++ Sbjct: 4 LLVEDDTYVGEMIKEGLTYEGYHVVWVRDGFSAMREALEGDYHLILLDIML--PKFDGMK 61 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + IR +P+I I+ ++ ++ +G DD + KP +E+LAR+ A+ RR K Sbjct: 62 VLSRIREVKDIPVIMITAKSQVEDKVEGLSAGADDYITKPFSFKEVLARINAVLRRYKKE 121 Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + +G L RE ++L+ L + G+ +++ ++F+ ++G Sbjct: 122 EEDIIKVGDLLINPRSYEVYYRGRSIKLTSREFKLLKVLAEHAGEVLSRERLFAKVWGSS 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 NVV+ +I LR KL ++ + + R +GY + Sbjct: 182 -YGENSNVVDVYIKNLRNKLEDRP-PKLIHTVRGMGYML 218 >gi|149910246|ref|ZP_01898891.1| Heavy metal response regulator [Moritella sp. PE36] gi|149806715|gb|EDM66680.1| Heavy metal response regulator [Moritella sp. PE36] Length = 224 Score = 134 bits (337), Expect = 9e-30, Method: Composition-based stats. Identities = 42/222 (18%), Positives = 100/222 (45%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + + G +++ ++ + D+ ++ L G Sbjct: 3 ILIIEDEVKLGKYLKQGLDESGFNVDLVDNGIDGLHQTTEMDYDLVLLDVML--PGMNGW 60 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ + +R +P+I ++ + + + G DD ++KP E+LAR+ R Sbjct: 61 DILKRLRLKPKYLPVIMLTARDDVADRVQGLELGADDYMSKPFSFCELLARIHNQLRDKG 120 Query: 121 VSNNRAETGPIRVFSD-GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +++ T F+ R + G+ L +E +LE+L+ +G+ ++K+QI S ++ Sbjct: 121 STHSAILTIGDLEFNRLKRKVKRDGDSIDLTAKEFALLEFLLTRQGQVLSKSQIASHVWD 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + + N++E I +LR K+ + + R +GY ++ Sbjct: 181 I-NFDSDTNIIEVAIKRLRNKIDQGFSSPLIHTVRGMGYVLE 221 >gi|90420574|ref|ZP_01228481.1| transcriptional regulatory protein, heavy metal response [Aurantimonas manganoxydans SI85-9A1] gi|90335302|gb|EAS49055.1| transcriptional regulatory protein, heavy metal response [Aurantimonas manganoxydans SI85-9A1] Length = 233 Score = 134 bits (337), Expect = 9e-30, Method: Composition-based stats. Identities = 49/230 (21%), Positives = 84/230 (36%), Gaps = 14/230 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 L+DD + ++G +E + S +++ + + Sbjct: 4 IALVDDDRNILASVSIALENEGYRVETYTDGASALEGLQSRPPNLAIFDI--KMPRMDGM 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL R +R S +P+I ++ L G DD + KP R ++ RV AI RR Sbjct: 62 ELLRRLRQKSDIPVIFLTSKDEEIDELFGLKMGADDYIRKPFSQRLLVERVRAILRRGAP 121 Query: 122 SNNRAETGPIR----------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 GP+ + + G L E IL L G ++ Sbjct: 122 REAAKPGGPVPESSLERGQLVMDQERHTCTWTGHPVTLTVTEFLILHSLAQRPGVVKSRD 181 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + A Y V++ ++SHI +LRKK + FD +++ +GY Sbjct: 182 ALMDAAYDE-QVYVDDRTIDSHIKRLRKKFKAIDDDFDMIETLYGVGYRF 230 >gi|332968745|gb|EGK07795.1| response regulator [Psychrobacter sp. 1501(2011)] Length = 248 Score = 134 bits (337), Expect = 9e-30, Method: Composition-based stats. Identities = 38/229 (16%), Positives = 89/229 (38%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++ DDG + + + L + ++ L GE + Sbjct: 16 ILVVDDDARLRSLLQRFLEDDGFVVRTAHDGSQMDKLMQRELFSLVVLDLML--PGEDGI 73 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112 + + +R +S +P+I ++ S + ++G DD + KP + +E + Sbjct: 74 SICKRLREDNSDIPIIMLTAKGSDSDRIAGLEAGADDYLPKPFNPKELLARIKAVLRRHS 133 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + E GP + R + G V L E +L+ L+ + + + + + Sbjct: 134 RELPGAPSQQVEVVEFGPWTLDLSTRTLKRDGNVVTLTTGEFSVLKALVQHPREPLTRDK 193 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + + G + E ++ +S+LR+ + + + + +GY Sbjct: 194 LMNLARGR-EWGAMERSIDVQVSRLRRLIEDNPSQARYIQTVWGVGYVF 241 >gi|163838960|ref|YP_001623365.1| two-component response regulator [Renibacterium salmoninarum ATCC 33209] gi|162952436|gb|ABY21951.1| two-component response regulator [Renibacterium salmoninarum ATCC 33209] Length = 248 Score = 134 bits (337), Expect = 9e-30, Method: Composition-based stats. Identities = 44/228 (19%), Positives = 87/228 (38%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEG-FNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 ++++D + + G +EG F E +S ++ ++ L Sbjct: 21 ILIVEDDPNINAAFKLALSQRGPQVEGCFLGAEGVIAARSQNPPELIVLDLML--PDLDG 78 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILA------RVAA 114 + R IR S VP+I ++ + ++G DD V KP+ + A R Sbjct: 79 FSVCRAIRQTSLVPIIMMTARSDDADIVVGLEAGADDYVVKPVDPAILDARILAVLRRNN 138 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + G +R+ PL E R+L L+ + G+ ++ Q+ Sbjct: 139 FEGEAADKADVVINGALRIDRSALSVSKNNAPLPLSPTEIRLLLELLQHPGQVRSREQLL 198 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 +++G + ++ +V++ I +LR K + V + R GY D Sbjct: 199 RSVWGA-EYLLDSRMVDASIQRLRSKNEDDPSNPQIVVTVRGFGYRFD 245 >gi|154484836|ref|ZP_02027284.1| hypothetical protein EUBVEN_02554 [Eubacterium ventriosum ATCC 27560] gi|149733789|gb|EDM49908.1| hypothetical protein EUBVEN_02554 [Eubacterium ventriosum ATCC 27560] Length = 236 Score = 134 bits (337), Expect = 9e-30, Method: Composition-based stats. Identities = 42/220 (19%), Positives = 94/220 (42%), Gaps = 6/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + + +G ++ + + D+ + Sbjct: 17 ILIVEDDKELSQLFQKVLEKNGYQVKSASDGAQALEVLDKEYIDLIISDIM--MPVMDGY 74 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-ARVAAIYRRL 119 EL +R A Q+P++ I+ S F SG DD + KP++ E++ A + R Sbjct: 75 ELVSELRSAGYQIPVLMITAKGSFDDMRQGFLSGSDDYMVKPVNVNEMVLRVGALLRRAQ 134 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++ ++ G D E LP++E +L L A+ G+ K Q+ ++G Sbjct: 135 ILNEHKIVIGSTEFDYDAMTVTTDKERLVLPKKEFLLLYKLAASPGRTFTKQQLMDEVWG 194 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 ++ + + +E HI ++R++ ++ F+ + + R +GY Sbjct: 195 -YETEADPHTIEVHIGRIRERFKDNPDFE-IVTMRGIGYK 232 >gi|147676383|ref|YP_001210598.1| response regulator [Pelotomaculum thermopropionicum SI] gi|146272480|dbj|BAF58229.1| response regulator [Pelotomaculum thermopropionicum SI] Length = 232 Score = 134 bits (337), Expect = 9e-30, Method: Composition-based stats. Identities = 45/225 (20%), Positives = 89/225 (39%), Gaps = 8/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + G ++ + + S+ D+ ++ L G Sbjct: 6 ILIVDDEPRLVRLVKVNLLASGYVVDTAADGKTAIEMLESSGYDLLILDIMLPGP-LNGF 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----REILARVAAIY 116 E+ + IR S +P+I ++ Q + FD+G DD V KP R + Sbjct: 65 EVCKRIREFSDIPIIMLTGRAREQDRIRGFDAGADDYVTKPFSVEELLLRVKAILRRSHP 124 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + G + + + V+G L E ++L +L N GK + + + Sbjct: 125 SEEFPKGPVYKFGDLVINFAQKRVFVRGREVRLTATEYQVLYHLGCNAGKVITHEDLLTR 184 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 ++G + E + + ++IS LRKK+ + G + K +GY + Sbjct: 185 VWGA-EYRNELHYLRNYISSLRKKIEDDPGDPKYILGKHGIGYYL 228 >gi|257126355|ref|YP_003164469.1| two component transcriptional regulator, winged helix family [Leptotrichia buccalis C-1013-b] gi|257050294|gb|ACV39478.1| two component transcriptional regulator, winged helix family [Leptotrichia buccalis C-1013-b] Length = 224 Score = 134 bits (337), Expect = 9e-30, Method: Composition-based stats. Identities = 48/225 (21%), Positives = 95/225 (42%), Gaps = 6/225 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L +D + + +G S++ E D+ ++ Sbjct: 3 ILLAEDEIDLNNIITKYLKKNGYSVDSVLDGEEALDYLEYGEYDLVILDIM--MPKVNGF 60 Query: 62 ELPRIIRAHSQVPLI-GISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ + +R + ++ S + D G DD + KP E++AR+ A+ RR Sbjct: 61 EVIKKLRDKGNHTSVLMLTARDSADDKVKGLDLGADDYIVKPFDFNELMARIRAVVRRKY 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQ-GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +++ V + + G+ L +E +LEYLM ++ + +++ QI ++ Sbjct: 121 GNSSNKLMIGNLVLNTSEKSVTRGGKQIELTGKEYEVLEYLMQSKNRILSRDQIKEHVWD 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI-DWN 223 FD + N+++ I +RKK+ + G + +KR LGY I D N Sbjct: 181 -FDYEGDSNIIDVLIKNIRKKIDVEGGKQIIYTKRGLGYVIKDEN 224 >gi|227530485|ref|ZP_03960534.1| response regulator [Lactobacillus vaginalis ATCC 49540] gi|227349590|gb|EEJ39881.1| response regulator [Lactobacillus vaginalis ATCC 49540] Length = 228 Score = 134 bits (337), Expect = 9e-30, Method: Composition-based stats. Identities = 48/226 (21%), Positives = 88/226 (38%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + +G + + D+ ++ L + Sbjct: 4 ILIIEDEENLAKFVEMELKHEGYETDVELDGRAGLQAALNQDFDLILLDLML--PELNGI 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-------HHREILARVAA 114 E+ R +R P+I ++ S+ + FD G DD + KP R +L R+ Sbjct: 62 EVARRVRELKNTPIIIMTARDSVIDRVSGFDHGADDYIVKPFAIEELLARVRALLRRINI 121 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 K + + + + R EV L +RE +L LM N +++ ++ Sbjct: 122 EDSSNKEHQTTVQYKDLTIEKENRVVRRGDEVINLTKREYELLLILMENINVVMSRKELL 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 S ++G +D VE NVV+ +I LR K+ + + R GY I Sbjct: 182 SKVWG-YDSKVETNVVDVYIRYLRNKIDRPGEKSYIQTVRGTGYVI 226 >gi|197117730|ref|YP_002138157.1| winged-helix transcriptional response regulator [Geobacter bemidjiensis Bem] gi|197087090|gb|ACH38361.1| winged-helix transcriptional response regulator [Geobacter bemidjiensis Bem] Length = 234 Score = 134 bits (337), Expect = 9e-30, Method: Composition-based stats. Identities = 41/229 (17%), Positives = 81/229 (35%), Gaps = 10/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + G +G + S E + D+ ++ L G Sbjct: 8 ILLVEDEMHLARGITFNLEQEGYLVSHVESGEEALEKVKVEKFDLIILDVML--PGIGGF 65 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI-----LARVAAI 115 E+ IR S+VP++ ++ + + +G DD + KP + +E + Sbjct: 66 EVCERIRTLDSRVPVLMLTARSAESDRIHGLAAGADDYLIKPFNLKEFLLRVSGMLRRSA 125 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + R + G VF + L E R+L G+ + + I Sbjct: 126 WYRPEPVEEGYRFGDNEVFLLSYRARTRQGEIDLTDLEVRMLSLFFHREGEAIPRGVILE 185 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDWN 223 +++G + E +++ I +LRK + R +GY N Sbjct: 186 SVWG-YSTDAETRTLDNFIVRLRKYFEPEPSRPIFFQTVRGVGYRFSRN 233 >gi|182625928|ref|ZP_02953693.1| DNA-binding response regulator [Clostridium perfringens D str. JGS1721] gi|177908841|gb|EDT71339.1| DNA-binding response regulator [Clostridium perfringens D str. JGS1721] Length = 226 Score = 134 bits (337), Expect = 9e-30, Method: Composition-based stats. Identities = 40/223 (17%), Positives = 86/223 (38%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G + ++ + D+ ++ L L Sbjct: 4 ILIVEDEEKIARFIELELIHEGYKVIKADNGRTGLEIAERGEADLIILDVML--PEINGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117 E+ R IR S+VP+I ++ ++ + D+G DD + KP I + Sbjct: 62 EVLRRIRKVSEVPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKKRVF 121 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 +K + G + + L RE +L+ LM N+ + + + + Sbjct: 122 TVKKDEDVIRCGLLTLDKMRHKVMYGDTEIELTNREFTLLQILMENKNIVLTRDVLIEKV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G ++ E NV++ ++ LR K+ + + + R +GY I Sbjct: 182 CG-YNYVGETNVIDVYVRYLRTKIDDVFKVKIISTVRGVGYVI 223 >gi|60677303|ref|YP_209661.1| DNA-binding response regulator [Clostridium perfringens] gi|60417938|dbj|BAD90605.1| DNA-binding response regulator [Clostridium perfringens] Length = 217 Score = 134 bits (337), Expect = 9e-30, Method: Composition-based stats. Identities = 44/220 (20%), Positives = 103/220 (46%), Gaps = 7/220 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++++G + G + ++ D++ I + L Sbjct: 3 ILIVEDDKIIREGISEYLSEFGYIIIEAKDGREALSKFNN---DINLIILDIQIPYVNGL 59 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + IR S++P++ ++ + + +D F + D V KP + AR+ ++ ++ Sbjct: 60 DVLKEIRKKSKLPILILTAFSDEEYKIDAFTNFADGYVEKPFSLPVLKARIDSLIKKNFG 119 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + E I V + ++ GE + +E IL+YL+ N G+ + + QI ++ Sbjct: 120 QIEKFEYKNIDVNFNSYTVKINGENIYIYAKELEILKYLVDNEGQVLTRMQIIDNVWKET 179 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +E + V++ +I +LRKKL+ D + + R +GY ++ Sbjct: 180 EEIPYDRVIDVYIKELRKKLKL----DCITTIRNVGYKLE 215 >gi|330965379|gb|EGH65639.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas syringae pv. actinidiae str. M302091] Length = 249 Score = 134 bits (337), Expect = 9e-30, Method: Composition-based stats. Identities = 48/225 (21%), Positives = 92/225 (40%), Gaps = 9/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD +++ ++ G + DV ++ L GE L Sbjct: 23 LIVDDDVAIRELLCDYLTRFNINARGVTDGTQMRQALTDETFDVVVLDLML--PGEDGLS 80 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R +R+ S +P++ ++ + + G DD + KP RE++AR+ I RR++ Sbjct: 81 LCRWLRSTSDIPILMLTARCEPTDRIIGLELGADDYMAKPFEPRELVARIQTILRRVRDE 140 Query: 123 NNRAETGPIRVFSD-----GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + T + G V PL E R+L + + +++ Q+ A Sbjct: 141 RSDQRTTIRFDAWRLNSVLRQLTAADGLVVPLSNAEFRLLRVFLERPHRVLSREQLLDAA 200 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 G EA + ++ +S+LR+KL + + + R GY D Sbjct: 201 RGRSIEAFD-RSIDLLVSRLRQKLGDDPKNPQLIKTVRGEGYLFD 244 >gi|329940057|ref|ZP_08289339.1| putative two-component system response regulator [Streptomyces griseoaurantiacus M045] gi|329300883|gb|EGG44779.1| putative two-component system response regulator [Streptomyces griseoaurantiacus M045] Length = 227 Score = 134 bits (337), Expect = 9e-30, Method: Composition-based stats. Identities = 47/226 (20%), Positives = 96/226 (42%), Gaps = 9/226 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + ++ + L ++ R DV ++ L +E Sbjct: 5 LVVDDEPGIVRALVINLRARAYEVDAAHDGATALRLAAAHRPDVIVLDLGL--PDMDGVE 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +R ++VP++ +S + + D+G DD V KP E+LAR+ A RR + Sbjct: 63 VIRGLRGRTRVPILVLSARHASDEKVGALDAGADDYVTKPFGMDELLARLRAAVRRAEPV 122 Query: 123 -----NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + +T V + + G L E +LE L+ + G+ V + Q+ + Sbjct: 123 GAGEGDVIVQTEGFTVDLAAKKVDRGGRDVRLTPTEWHLLEVLVRSPGRLVGQKQLLKEV 182 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 +G E N + ++++LR+KL + ++ +GY + Sbjct: 183 WGPS-YGTETNYLRVYMAQLRRKLEADPAHPRHFITEPGMGYRFEK 227 >gi|300785585|ref|YP_003765876.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299795099|gb|ADJ45474.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 230 Score = 134 bits (337), Expect = 9e-30, Method: Composition-based stats. Identities = 48/220 (21%), Positives = 89/220 (40%), Gaps = 7/220 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L DD +++ + +G + DV ++ G L Sbjct: 9 LLADDDRAIRESLVRALDLEGYHVTEVPDGVSALATARRGPFDVLILDVM--MPGVDGLG 66 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R++RA P++ ++ + D+G DD + KP E+LAR+ A+ RR Sbjct: 67 VCRVLRAEGDPTPILMLTARVETPDRVAGLDAGADDYLPKPFELDELLARLRALLRRTSP 126 Query: 122 SNNRAETGPIRV---FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + T + R QG L + E +LE L+ N G + +T I+ I+ Sbjct: 127 EPDARRTLRLGELAVDPAARRVWWQGTEITLSKTEFDLLELLVRNAGIVLDRTTIYQRIW 186 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 G ++ + + +I LR+KL + + + R +GY Sbjct: 187 G-YEFGADSKNLAVYIGYLRRKLEQAGATELIHTVRGVGY 225 >gi|229042513|ref|ZP_04190258.1| Two-component response regulator [Bacillus cereus AH676] gi|228726866|gb|EEL78078.1| Two-component response regulator [Bacillus cereus AH676] Length = 242 Score = 134 bits (337), Expect = 9e-30, Method: Composition-based stats. Identities = 42/220 (19%), Positives = 75/220 (34%), Gaps = 6/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L+DD + + G + S E + ++ Sbjct: 21 ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIM--MPKMDGW 78 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E + IR+ S +P+I ++ + G DD + KP H E+ R Sbjct: 79 ETCKKIRSFSNIPIIMVTARDQTVDVVQGLKIGADDYITKPFHEEEL-FARIEAVLRRTN 137 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + + I V E L E +L + + + + Q+ I+GL Sbjct: 138 EHKQIQYHGIVWDETKHFVSVHNEELLLTPIEFSLLGLFLRHVNYVLNRDQLIERIWGL- 196 Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219 + E+ V+SHI LR KLR + + +GY Sbjct: 197 NTNTEDRTVDSHIRNLRDKLRKANFPIDHHLKTVYGVGYR 236 >gi|229097240|ref|ZP_04228202.1| Two-component response regulator vanRB [Bacillus cereus Rock3-29] gi|229103326|ref|ZP_04234009.1| Two-component response regulator vanRB [Bacillus cereus Rock3-28] gi|229116236|ref|ZP_04245626.1| Two-component response regulator vanRB [Bacillus cereus Rock1-3] gi|228667068|gb|EEL22520.1| Two-component response regulator vanRB [Bacillus cereus Rock1-3] gi|228680165|gb|EEL34359.1| Two-component response regulator vanRB [Bacillus cereus Rock3-28] gi|228686051|gb|EEL39967.1| Two-component response regulator vanRB [Bacillus cereus Rock3-29] Length = 214 Score = 134 bits (337), Expect = 9e-30, Method: Composition-based stats. Identities = 47/220 (21%), Positives = 90/220 (40%), Gaps = 9/220 (4%) Query: 5 IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64 ++D +++ ++ + ++ D+ ++ E+ Sbjct: 2 VEDDQEIQELIKQFLMTQHYTVVVASDGLEGMTQFNNQSFDLILLDVM--MPNLNGFEVS 59 Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRLKVS 122 ++IR+ S VP+I ++ + + FD G+DD + KP ++ RV A K Sbjct: 60 KMIRSQSNVPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSYDKNV 119 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 NN +R+ D V L +E IL+ L N K + + I ++G +D Sbjct: 120 NNHLIFKEVRIDVDAYRVYVNDVEIILTTKEFEILQLLFQNERKVLTRENIVEKVWG-YD 178 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 E ++++HI LRKKL + + + +GY ID Sbjct: 179 YFGETRIIDTHIKNLRKKL----AIPYIKTIKGIGYKIDE 214 >gi|229154353|ref|ZP_04282473.1| Two-component response regulator [Bacillus cereus ATCC 4342] gi|228629177|gb|EEK85884.1| Two-component response regulator [Bacillus cereus ATCC 4342] Length = 242 Score = 134 bits (337), Expect = 9e-30, Method: Composition-based stats. Identities = 45/220 (20%), Positives = 75/220 (34%), Gaps = 6/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L+DD + + G + S E + ++ Sbjct: 21 ILLVDDEPRMLELLTLYLTPTGYNCICARSGEEAISHIENQNFKFVLLDIM--MPTMDGW 78 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E + IR+ S VP+I ++ + G DD V KP H E+ R Sbjct: 79 ETCKKIRSFSNVPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEEL-FARIEAVLRRTN 137 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + I V E L E +L + + + + Q+ I+GL Sbjct: 138 QRTQIQYHGILWDEAKHFVSVYNEELLLTPIEFSLLGLFLRHVNYVLNRDQLIERIWGL- 196 Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219 + E+ V+SHI LR KLR D + + +GY Sbjct: 197 NTNTEDRTVDSHIRNLRDKLRKVNFPIDDHLKTVYGVGYR 236 >gi|226357470|ref|YP_002787209.1| response regulator, OmpR [Deinococcus deserti VCD115] gi|226319460|gb|ACO47455.1| putative response regulator, OmpR [Deinococcus deserti VCD115] Length = 226 Score = 134 bits (337), Expect = 9e-30, Method: Composition-based stats. Identities = 40/222 (18%), Positives = 85/222 (38%), Gaps = 7/222 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + + + G + + D+ ++ L Sbjct: 5 ILVIEDDPDITQVVKFVLEEAGHRVFSAPDGASGLCVAHEQNPDLILLDLGL--PDIDGA 62 Query: 62 ELPRIIRAHSQVPLI---GISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR 118 ++ R + S V ++ D D FDSGV+ + KP H +E+ + R Sbjct: 63 QVARRLTLTSHVRIMGLRAPDDVDHKINLFDLFDSGVEAYMTKPFHPQEL-LARVNVQLR 121 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + G + + R G+ L E +L L+ G+ + +I ++ Sbjct: 122 RSSGCDVTSVGALDISLQDRICLYSGQHLKLTATEFELLSVLVQQPGRVYRRDEIERELW 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ + ++ HI+ LR K+R+ G+ + + R +GY+I Sbjct: 182 NT-EQPRNNSSLDVHIANLRGKIRDLGGYGFIRTVRGIGYAI 222 >gi|229119327|ref|ZP_04248628.1| Two-component response regulator vanRB [Bacillus cereus Rock1-3] gi|228664089|gb|EEL19629.1| Two-component response regulator vanRB [Bacillus cereus Rock1-3] Length = 214 Score = 134 bits (337), Expect = 9e-30, Method: Composition-based stats. Identities = 44/220 (20%), Positives = 91/220 (41%), Gaps = 9/220 (4%) Query: 5 IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64 ++D +++ + + + D+ ++ E+ Sbjct: 2 VEDDQEIQELIKQFLMTQQYKVIVASDGLEGMKQFNKQSFDLILLDVM--MPNLNGFEVA 59 Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRLKVS 122 ++IR+ S +P+I ++ Q + FD G+DD + KP ++ RV A + + Sbjct: 60 KMIRSQSNIPIIMLTALEEEQDQMKGFDLGIDDYITKPFSFHVLMRRVEAVLRRSNNQST 119 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 +N + V D V PL +E IL+ L+ N K + + I I+G ++ Sbjct: 120 DNHFVFKELHVDGDAYKVYVNRVDVPLTTKEFEILQLLLQNEKKVLTRENIVEKIWG-YE 178 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 A + ++++H+ +RKKL + + + +GY ID Sbjct: 179 YAGDTRMIDTHMKNIRKKLDIP----YIKTVKGIGYKIDE 214 >gi|218282490|ref|ZP_03488749.1| hypothetical protein EUBIFOR_01331 [Eubacterium biforme DSM 3989] gi|218216586|gb|EEC90124.1| hypothetical protein EUBIFOR_01331 [Eubacterium biforme DSM 3989] Length = 214 Score = 134 bits (337), Expect = 9e-30, Method: Composition-based stats. Identities = 42/221 (19%), Positives = 98/221 (44%), Gaps = 11/221 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D L+++G + G S+ + ++ D+ + + L Sbjct: 4 ILVVEDDTLIREGLSEFLSESGYSIIQAKDGKEALEKFNT---DIHLVILDIQIPYINGL 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + IR S +P++ ++ + + + +D + + D + KP + AR+ L Sbjct: 61 DVLKEIRKESDLPVLILTAFSNEEFKIDAYTNLADGYIEKPFSLPVLKARI----DALLQ 116 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + V ++ G+ + +E IL+YL+ N G + + QI ++ Sbjct: 117 KQDIFAYKNVCVNFKSYTAKIDGKTIDINAKELEILKYLLDNAGIALTRAQILDHVWKDS 176 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +E + V++ +I +LRKKL G D + + R +GY ++ Sbjct: 177 EEVPYDRVIDVYIKELRKKL----GLDCITTIRNVGYKLEK 213 >gi|257061481|ref|YP_003139369.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8802] gi|256591647|gb|ACV02534.1| two component transcriptional regulator, winged helix family [Cyanothece sp. PCC 8802] Length = 635 Score = 134 bits (337), Expect = 9e-30, Method: Composition-based stats. Identities = 45/222 (20%), Positives = 88/222 (39%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D A +++ N+ E L DV ++ L + Sbjct: 3 ILLIEDDASTSLAISQTLTQKKYAVDAVNNGETGLELAQLFPYDVILLDIML--PQLDRI 60 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R +R + P++ ++ + + ++G DD + KP E+LAR+ A+ RR + Sbjct: 61 TVCRRLRSQQNHTPILLLTAKNHPRDCVMGLEAGADDYLVKPFDWAELLARIQALSRRGQ 120 Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + QG++ L E +LE + + + ++ I I+ Sbjct: 121 QVLPDVLRWENLVLNQKTHEVTYQGQLLHLTPTEYSLLELFLRHPQRVFSRQVIIDQIWT 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 L EE + SHI LR+KL+ + + + GY + Sbjct: 181 LDKVPGEE-TISSHIKALRQKLKAVGMTQNMIKTVYGFGYRL 221 Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 15/102 (14%), Positives = 37/102 (36%), Gaps = 1/102 (0%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +LIDD + A G ++ ++ + + + D+ ++ + G + Sbjct: 510 LMLIDDDPNFLEVLKATLTPWGFNVVSLSNPQQFWPVLEATNPDLLILDLEMPHFSGLNL 569 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP 102 + R VP++ +S + ++ G D + K Sbjct: 570 CQAVRKDDRFCSVPILFLSGHDDGESIRQMLVHGADCYLPKT 611 >gi|110798695|ref|YP_695502.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124] gi|168211129|ref|ZP_02636754.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC 3626] gi|110673342|gb|ABG82329.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124] gi|170710848|gb|EDT23030.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC 3626] Length = 226 Score = 134 bits (337), Expect = 9e-30, Method: Composition-based stats. Identities = 40/223 (17%), Positives = 86/223 (38%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G + ++ + D+ ++ L L Sbjct: 4 ILIVEDEEKIARFIELELIHEGYKVIKADNGRTGLEIAERGEVDLIILDVML--PEINGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117 E+ R IR S+VP+I ++ ++ + D+G DD + KP I + Sbjct: 62 EVLRRIRKVSEVPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKKRVF 121 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 +K + G + + L RE +L+ LM N+ + + + + Sbjct: 122 TVKKDEDVIRCGLLTLDKMRHKVMYGDTEIELTNREFTLLQILMENKNIVLTRDVLIEKV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G ++ E NV++ ++ LR K+ + + + R +GY I Sbjct: 182 CG-YNYVGETNVIDVYVRYLRTKIDDVFKVKIISTVRGVGYVI 223 >gi|13472444|ref|NP_104011.1| two-component response regulator [Mesorhizobium loti MAFF303099] gi|14023190|dbj|BAB49797.1| two-component response regulator [Mesorhizobium loti MAFF303099] Length = 238 Score = 134 bits (337), Expect = 9e-30, Method: Composition-based stats. Identities = 47/228 (20%), Positives = 90/228 (39%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++D F G+ E + A+ D+ ++ L G+ L Sbjct: 7 ILIVDDDKGIRDLLQEFFQKRGLHTSVAADGTEMEAVLRRAQVDLIVLDVML--PGKSGL 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL R +RA P+I ++ + + G DD V KP RE+LAR+ A+ RR Sbjct: 65 ELCRDLRAQYSTPIIMLTAVTETTDRVVGLEMGADDYVPKPFDPRELLARIRAVLRRNGA 124 Query: 122 SNNRAETGPIRVFSDGRDPEVQGE--------VFPLPRRERRILEYLMANRGKRVAKTQI 173 + + T G + L E +L+ + + + + + Q+ Sbjct: 125 AEPKRATAKQIYRFAGWTMDCSRRRLTAPDDVRVELTMAEFNLLQTFVKSAQRVLTRDQL 184 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 G D + + ++ +S+LR+K+ + + + R GY Sbjct: 185 IELSGGDSDYSFD-RSIDILVSRLRRKMEDDPKTPKLILTVRSGGYQF 231 >gi|299068876|emb|CBJ40117.1| response regulator in two-component regulatory system, regulation of heavy metal resistance operon czcCBA [Ralstonia solanacearum CMR15] Length = 224 Score = 134 bits (337), Expect = 9e-30, Method: Composition-based stats. Identities = 44/221 (19%), Positives = 89/221 (40%), Gaps = 4/221 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D D + + G + S + D+ ++ L G Sbjct: 3 LLIVEDEPKAGDYLLKGLTESGFVADLARSGPDGLYQAMEHDYDLIVLDVML--PGMDGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R +R P++ ++ L L + G DD + KP E++ARV I RR + Sbjct: 61 QVIRELRRRKTTPVLFLTARDELSDRLKGLELGADDYLVKPFAFAELVARVHTILRRGPM 120 Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + + R G L +E +L L G+ ++++ I S ++ + Sbjct: 121 RESEVLEIADLTIDTIKRRVTRAGRRIDLTAKEYALLHLLARRTGEVLSRSLISSQVWDV 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + NVV+ I +LR K+ + + + R +GY +D Sbjct: 181 -NFDSNTNVVDVAIRRLRAKVDDPFEPKLIHTLRGMGYVLD 220 >gi|295703892|ref|YP_003596967.1| two-component response regulator [Bacillus megaterium DSM 319] gi|294801551|gb|ADF38617.1| two-component response regulator [Bacillus megaterium DSM 319] Length = 239 Score = 134 bits (337), Expect = 9e-30, Method: Composition-based stats. Identities = 49/227 (21%), Positives = 94/227 (41%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + +G + + + ++ D+ ++ L G + Sbjct: 5 ILIIEDEVRIARALQIELEHEGYQVLVVHEGKTGLETALNSSIDLILLDVML--PGLNGI 62 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R IR P+I ++ + + D G +D + KP E+LARV R Sbjct: 63 EVLRRIRKKDIYLPIILLTARDTTLDKVMGLDHGANDYITKPFEIEEVLARVRNSLRHRA 122 Query: 121 VSNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + +E + V + RD + + L +E +L +L+ N+ +++ I Sbjct: 123 IVQDVSEKKDVHLSIEDLSVNLETRDVIRKNKQIILTSKEYDLLVHLLKNKNIVLSRDNI 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G +D E NVV+ I LRKKL + + R +GY I Sbjct: 183 LLTVWG-YDYEGETNVVDVFIGHLRKKLEEDTTSSLIQTIRGVGYVI 228 >gi|256419719|ref|YP_003120372.1| two component transcriptional regulator, winged helix family [Chitinophaga pinensis DSM 2588] gi|256034627|gb|ACU58171.1| two component transcriptional regulator, winged helix family [Chitinophaga pinensis DSM 2588] Length = 235 Score = 134 bits (337), Expect = 9e-30, Method: Composition-based stats. Identities = 37/228 (16%), Positives = 87/228 (38%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D +++ +G + ++ + D+ ++ L + Sbjct: 9 ILLVEDEENLQEALKLNLELEGYEVTAVDNGTAALKAVKNEYFDLIILDIML--PEMDGI 66 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-------HREILARVA 113 + IR +++VP++ +S S + G DD + KP + +++ + Sbjct: 67 AVCENIRIQNNEVPILFLSAKNSSADRVLGLKKGGDDYMTKPFNLEELLLRVEKLIVKNK 126 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 I + VS F+ G+ + L ++E +L+ L+ N+G+ V + +I Sbjct: 127 RIQDKDSVSTVYHFGSNEIDFAAQECIGKDGKHYELSKKETMLLKLLIENKGEVVTREKI 186 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 ++G ++ +++ I RK S R +GY Sbjct: 187 LQVVWG-YNVYPTTRTIDNFILNFRKYFEEDSRNSRYFHSVRGVGYKF 233 >gi|229095303|ref|ZP_04226295.1| Two-component response regulator [Bacillus cereus Rock3-29] gi|228688162|gb|EEL42048.1| Two-component response regulator [Bacillus cereus Rock3-29] Length = 242 Score = 134 bits (337), Expect = 9e-30, Method: Composition-based stats. Identities = 43/220 (19%), Positives = 75/220 (34%), Gaps = 6/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L+DD + + G + S E + ++ Sbjct: 21 ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIM--MPKMDGW 78 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E + IR+ S +P+I ++ + G DD V KP H E+ R Sbjct: 79 ETCKKIRSFSNIPIIMVTARDQTVAVVQGLKIGADDYVTKPFHEEEL-FARIEAVLRRTN 137 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + + I V E L E +L + + + + Q+ I+GL Sbjct: 138 EHKQIQYHGIVWDETKHFISVHNEELLLTPIEFSLLGLFLRHVNYVLNRDQLIERIWGL- 196 Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219 + E+ V+SHI LR KLR + + +GY Sbjct: 197 NTNTEDRTVDSHIRNLRDKLRKANFPIDHHLKTVYGVGYR 236 >gi|119469680|ref|ZP_01612549.1| DNA-binding response regulator [Alteromonadales bacterium TW-7] gi|119446927|gb|EAW28198.1| DNA-binding response regulator [Alteromonadales bacterium TW-7] Length = 241 Score = 134 bits (337), Expect = 9e-30, Method: Composition-based stats. Identities = 41/234 (17%), Positives = 82/234 (35%), Gaps = 17/234 (7%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + ++ S E + + ++ L L Sbjct: 6 LLIVEDDREIGKLITTQLTSLNLHVDHVISAELALKKIAKHPYGLILLDINL--PQMDGL 63 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L R I+ H +I ++ S + + G DD + KP RE+ ARV R Sbjct: 64 SLCRKIKEHYPTTSVILLTALSSDMDRVIGLEMGADDYICKPFFARELQARVKTQLRHRA 123 Query: 121 VSNNRAETGPI-------------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKR 167 T + D + + L E +L Y + Sbjct: 124 QLLASQNTDEPSVASEQTLKVGSLNIEFDSHQVYLAEQAINLTATEFDLLVYFARHPNHV 183 Query: 168 VAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ Q+ ++G + + E+ V SHI++LR KL +++ +GY ++ Sbjct: 184 FSRQQLLDKVWG-YQHSGYEHTVNSHINRLRAKLELHQSTPIIETVWGVGYKLN 236 >gi|148379025|ref|YP_001253566.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 3502] gi|153933944|ref|YP_001383407.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|153937242|ref|YP_001386955.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|170757255|ref|YP_001780669.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] gi|170760535|ref|YP_001786430.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] gi|226948311|ref|YP_002803402.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] gi|148288509|emb|CAL82588.1| two-component response regulator [Clostridium botulinum A str. ATCC 3502] gi|152929988|gb|ABS35488.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|152933156|gb|ABS38655.1| DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|169122467|gb|ACA46303.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra] gi|169407524|gb|ACA55935.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] gi|226841225|gb|ACO83891.1| DNA-binding response regulator [Clostridium botulinum A2 str. Kyoto] Length = 228 Score = 134 bits (337), Expect = 9e-30, Method: Composition-based stats. Identities = 51/224 (22%), Positives = 98/224 (43%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D V + A +G + + S + ++ L Sbjct: 4 ILIIEDEKRVSEVLKAYLEKEGYKVYCTTKGLESIEIFKSIDIQLIILDLML--PDISGE 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ RIIR S V + ++ +L ++ + G D+ + KP RE+ ARV A++RRL Sbjct: 62 EVCRIIRQSSDVHIFMLTAKGALNDRIEGLNIGADEYLIKPFSPRELTARVNALFRRLST 121 Query: 122 SNNRAETGPIR----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 N+ + + D R +V G+ + E IL L++N+GK +++ Q+ + I Sbjct: 122 YNSTSNLIFDDGRLGIDYDKRVVKVNGKEVSITPNEFDILYTLVSNKGKVLSREQLINKI 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 +G+ D + ++ HI +RKK+ + + +GY Sbjct: 182 FGI-DFNGYDRTIDVHIKNIRKKIEEDTKNPKYIVTVMKVGYKF 224 >gi|121611277|ref|YP_999084.1| osmolarity response regulator [Verminephrobacter eiseniae EF01-2] gi|121555917|gb|ABM60066.1| two component transcriptional regulator, winged helix family [Verminephrobacter eiseniae EF01-2] Length = 243 Score = 134 bits (337), Expect = 9e-30, Method: Composition-based stats. Identities = 39/229 (17%), Positives = 83/229 (36%), Gaps = 14/229 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD A ++D +G + + L D+ ++ GE L Sbjct: 12 LVVDDDARIRDLLHRYLTQEGFDVMAAEDGKALNRLLLRETVDIIVLDLM--MPGEDGLS 69 Query: 63 LPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112 + R +R A+ + P+I ++ + + G DD + KP + RE Sbjct: 70 ICRRLRAANDRTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARIHAVLRRRPA 129 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 N GP R + GE L E +L+ L+ + + +++ + Sbjct: 130 QEAPGAPSGDNEVVTFGPFVFDLGTRALQRNGEELVLTTGEFAMLKALVRHPRQPLSREK 189 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + G + + ++ +S+LRK + + + + +GY Sbjct: 190 LALLARGR-EFEPFDRSLDVQVSRLRKMVEADAAAPRYIQTVWGVGYVF 237 >gi|330888203|gb|EGH20864.1| KDP operon transcriptional regulatory protein kdpE [Pseudomonas syringae pv. mori str. 301020] gi|330988448|gb|EGH86551.1| KDP operon transcriptional regulatory protein kdpE [Pseudomonas syringae pv. lachrymans str. M301315] Length = 230 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 42/223 (18%), Positives = 86/223 (38%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD ++ G + + + + D+ ++ L Sbjct: 7 ILVIDDEPQIRKFLRISLVSQGYKVLEAATGGDGLTQAALNKPDLLVLDLGL--PDMDGQ 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 ++ R S VP++ +S S + D+G +D V KP +E LAR+ Sbjct: 65 QVLSEFREWSAVPVLVLSVRASEAQKVQALDAGANDYVTKPFGIQEFLARIRALLRQVSG 124 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + GP+ V R + G L R+E +L L + G+ + + Q+ I+ Sbjct: 125 SDKPESALQFGPLTVDLAYRRVLLDGHEVALTRKEYAVLAQLARHPGRVITQQQLLKDIW 184 Query: 179 GLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220 G + + + + LR+KL + + ++ +GY + Sbjct: 185 GPTHTD-DSHYLRIVVGHLRQKLADDPTAPRFILTEPGIGYRL 226 >gi|301062846|ref|ZP_07203439.1| putative transcriptional activator protein CopR [delta proteobacterium NaphS2] gi|300443046|gb|EFK07218.1| putative transcriptional activator protein CopR [delta proteobacterium NaphS2] Length = 224 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 48/222 (21%), Positives = 94/222 (42%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G +++ + L + D + ++ L G L Sbjct: 3 ILVVEDDPKIASFVANGLKEAGFAVDVAHDGVDGLHLGETEPYDAAMVDIML--PGLDGL 60 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA--AIYRR 118 L +R P+I +S S+ + +G DD + KP E+LAR+ Sbjct: 61 TLIEKLREKKITTPVIILSAKRSVDDRVRGLQTGGDDYMTKPFSFSELLARIHALIRRST 120 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + G + + R+ + GE LP RE +LE+L+ N+G+ V+KT I +Y Sbjct: 121 RVAEPSALSAGNLTLDLLTREVKRGGEEISLPAREFALLEHLVRNKGRIVSKTSILEHVY 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + NVV+ + ++R K+ + + R +GY + Sbjct: 181 D-YSFDPQTNVVDVLVCRVRNKVDKDFDRKLIHTVRGMGYVL 221 >gi|282899307|ref|ZP_06307276.1| Two component Transcriptional regulator, Winged helix family [Cylindrospermopsis raciborskii CS-505] gi|281195764|gb|EFA70692.1| Two component Transcriptional regulator, Winged helix family [Cylindrospermopsis raciborskii CS-505] Length = 240 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 39/225 (17%), Positives = 85/225 (37%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD V++ E + L + ++ L Sbjct: 11 IMVVDDDFSVRNLVHRFLSRK-YKTEAAADGKSAMALFEQFNPSLVILDWNL--PDVNGY 67 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI----HHREILARVAAIYR 117 +L + +++ + V ++ ++ + G DD + KP + A + I Sbjct: 68 KLCQDMQSRTNVLVLMLTSRNDETDKIKVLAGGADDFMTKPFSLAEVEVRVDALLRRIRY 127 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + R + + +GR+ + + L E IL +L + G+ ++ Q+ I Sbjct: 128 IQPTQSQRLIFKQLAINPEGREVTLNDKPLALTALEFNILHFLACHPGQAWSRPQLIQKI 187 Query: 178 YGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 +G D + VV+ HI +LRKK+ + + + + R GY + Sbjct: 188 WGC-DYVGDGRVVDVHIGQLRKKMEVDSSTPEFIKTVRGYGYKFE 231 >gi|260439186|ref|ZP_05793002.1| DNA-binding response regulator VicR [Butyrivibrio crossotus DSM 2876] gi|292808388|gb|EFF67593.1| DNA-binding response regulator VicR [Butyrivibrio crossotus DSM 2876] Length = 223 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 42/220 (19%), Positives = 94/220 (42%), Gaps = 6/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + + +G ++ + + D+ + Sbjct: 4 ILIVEDDKELSQLFQKVLEKNGYQVKSASDGAQALEVLDKEYIDLIISDIM--MPVMDGY 61 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-ARVAAIYRRL 119 EL +R A Q+P++ I+ S F SG DD + KP++ E++ A + R Sbjct: 62 ELVSELRSAGYQIPVLMITAKGSFDDMRQGFLSGSDDYMVKPVNVNEMVLRVGALLRRAQ 121 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++ ++ G D E LP++E +L L A+ G+ K Q+ ++G Sbjct: 122 ILNEHKIVIGSTEFDYDAMTVTTDKESLVLPKKEFLLLYKLAASPGRTFTKQQLMDEVWG 181 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 ++ + + +E HI ++R++ ++ F+ + + R +GY Sbjct: 182 -YETEADPHTIEVHIGRIRERFKDNPDFE-IVTMRGIGYK 219 >gi|229591553|ref|YP_002873672.1| two-component system response regulator [Pseudomonas fluorescens SBW25] gi|229363419|emb|CAY50598.1| two-component system response regulator [Pseudomonas fluorescens SBW25] Length = 227 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 48/220 (21%), Positives = 85/220 (38%), Gaps = 5/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + G ++ + + ++ L G + Sbjct: 7 ILIVEDEPKLAALLQDYLVAAGYPTLCLDNGLQVVPTVRAQPPRLILLDLML--PGRDGM 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + +R S VP+I I+ L D G DD + KP RE++ARV AI RR Sbjct: 65 QVCQDLRGFSAVPIIMITARVEEVDRLLGLDLGADDYICKPFSPREVVARVKAILRRGPQ 124 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + + G L E R+L + G+ ++ Q+ +Y Sbjct: 125 LLSSTPARL-LIDETQYRASLDGVALDLTPLELRLLSTFARSAGRVFSRDQLLDKLYSDH 183 Query: 182 DEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220 V + V+SHI LR+KL G P++S +GY Sbjct: 184 -RVVTDRTVDSHIRNLRRKLEQACPGETPIESLYGVGYRF 222 >gi|220912548|ref|YP_002487857.1| two component transcriptional regulator, winged helix family [Arthrobacter chlorophenolicus A6] gi|219859426|gb|ACL39768.1| two component transcriptional regulator, winged helix family [Arthrobacter chlorophenolicus A6] Length = 240 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 41/221 (18%), Positives = 88/221 (39%), Gaps = 6/221 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + G +++ + S D+ ++ L ++ Sbjct: 21 LVVDDDPHLLKALRITLAAHGYAVDAASDGASALVAASRHAPDLLILDLGL--PDMDGVD 78 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA--AIYRRLK 120 + R +R S +P++ +S + D+G DD + KP E+LAR+ Sbjct: 79 VLRDLRRWSTLPVLVLSARHGSADKVGALDAGADDYITKPFGLDELLARLRALQRRVPAP 138 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + V R + G L E +ILE L+ N + + + Q+ + ++G Sbjct: 139 EAAPVVASAAFSVDLAARRVDRGGSAVRLTPTEWKILEILVLNPNRLITQQQLLARVWG- 197 Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 E N + ++++LR+KL + + ++ +GY Sbjct: 198 PGYVKEANYLRVYMAQLRRKLEADAGKPRHLLTEPGIGYRF 238 >gi|27468018|ref|NP_764655.1| putative response regulator ArlR [Staphylococcus epidermidis ATCC 12228] gi|251810848|ref|ZP_04825321.1| response regulator [Staphylococcus epidermidis BCM-HMP0060] gi|282876146|ref|ZP_06285013.1| response regulator receiver domain protein [Staphylococcus epidermidis SK135] gi|293366617|ref|ZP_06613294.1| DNA-binding response regulator [Staphylococcus epidermidis M23864:W2(grey)] gi|81842840|sp|Q8CP82|ARLR_STAES RecName: Full=Response regulator ArlR gi|27315563|gb|AAO04697.1|AE016747_194 putative response regulator ArlR [Staphylococcus epidermidis ATCC 12228] gi|251805683|gb|EES58340.1| response regulator [Staphylococcus epidermidis BCM-HMP0060] gi|281295171|gb|EFA87698.1| response regulator receiver domain protein [Staphylococcus epidermidis SK135] gi|291319386|gb|EFE59755.1| DNA-binding response regulator [Staphylococcus epidermidis M23864:W2(grey)] gi|329729376|gb|EGG65782.1| response regulator ArlR [Staphylococcus epidermidis VCU144] gi|329732898|gb|EGG69243.1| response regulator ArlR [Staphylococcus epidermidis VCU028] gi|329735341|gb|EGG71633.1| response regulator ArlR [Staphylococcus epidermidis VCU045] Length = 219 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 49/219 (22%), Positives = 88/219 (40%), Gaps = 4/219 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + +++ N + S D+ ++ L L Sbjct: 4 ILIVEDEQNLARFIELELTHENYTVDIENDGKVGLDKALSKPYDLYILDLML--PNINGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR + P+I I+ + D G DD + KP E+L R + Sbjct: 62 EICRQIRQKTTTPIIIITAKSETYDKVAGLDYGADDYIVKPFDIEELL-ARIRAVLRRQP 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + I + D V G L + E +L L NR + + QI ++G + Sbjct: 121 DKDVLDINGIIIDKDAFKVTVNGHQLELTKTEYDLLYVLAENRNHVMQREQILDHVWG-Y 179 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + VE NVV+ +I LR KL+ +++ R +GY I Sbjct: 180 NSEVETNVVDVYIRYLRNKLKPFNKEKSIETVRGVGYVI 218 >gi|328461774|gb|EGF34010.1| response regulator [Lactobacillus helveticus MTCC 5463] Length = 238 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 40/233 (17%), Positives = 80/233 (34%), Gaps = 15/233 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D V + F +G + + + I L + + Sbjct: 3 ILMVEDDNSVAEMMGMFFKKEGWQQDIAVDGVEAVDMFKENADKYDLITLDLNLPKKDGI 62 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPI------------HHREI 108 ++ + +RA S P+I ++ S + G D+ V KP H R + Sbjct: 63 QVAKEVRAISPTVPIIMLTARGSESDQVLGLGIGADEYVTKPFSPIALIARIKALHRRVM 122 Query: 109 LARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 + V L +E +L + + Sbjct: 123 MEEDVQTQENNNQEYEIQTAHLKISKDRREVLFDDQLVVDLTPKEFDLLYTMAQKPKQVF 182 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ Q+ ++G ++ EE V++HI KLR+KL K+G + + +GY D Sbjct: 183 SRDQLLDLVWG-YEYYGEERTVDAHIKKLRQKLE-KVGAKVIQTVWGVGYKFD 233 >gi|310780216|ref|YP_003968548.1| two component transcriptional regulator, winged helix family [Ilyobacter polytropus DSM 2926] gi|309749539|gb|ADO84200.1| two component transcriptional regulator, winged helix family [Ilyobacter polytropus DSM 2926] Length = 225 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 47/222 (21%), Positives = 90/222 (40%), Gaps = 7/222 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + +G S++ + L ++ ++ L Sbjct: 4 ILIIEDEKKISRYLQLELEHEGYSVDIASDGIMALKLFGENFYNIILLDLML--PKLSGE 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118 E+ R IR S VP+I ++ + ++ D G DD + KP E + + Sbjct: 62 EVCRRIRKKSDVPVIVLTATDKTFSKINLLDLGADDYITKPFIIGELLARIRVALRHNKE 121 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 IR+ + + VQ E L + E +L YL+ NR +++ +I + I+ Sbjct: 122 FSDKGQVISYEGIRLDLNKKLVIVQEEEISLTKTEFNLLHYLILNREIVLSREKILNNIW 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G +D E +V+ +I LRKK+ + + + R GY + Sbjct: 182 G-YDYNGGEKIVDVYIKSLRKKV-DFREKKLIHTVRGFGYML 221 >gi|300309361|ref|YP_003773453.1| response regulator for cobalt/zinc/cadmium resistance transcription regulator protein [Herbaspirillum seropedicae SmR1] gi|300072146|gb|ADJ61545.1| response regulator for cobalt/zinc/cadmium resistance transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 235 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 40/220 (18%), Positives = 88/220 (40%), Gaps = 4/220 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D D + G ++ + + + ++ L G Sbjct: 3 ILLVEDEPKSGDYLRRGLTESGFVVDWVQTGVDGLHNARTLDYKLIILDVML--PGMNGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120 ++ R +R P++ ++ ++ + + G DD + KP + E+LARV + R Sbjct: 61 DILRELRRTHDTPVLFLTARDEVEDRVKGLELGADDYLVKPFAYTELLARVRTLLRRGPS 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + E + + R G+ L +E +L L+ G+ +++ QI S ++ + Sbjct: 121 REVDLIEYDDVVLDVLRRKVTRAGQRIDLTAKEFALLHMLIRRPGEVLSRPQIASQVWDM 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + NVV+ + +LR KL + + +GY Sbjct: 181 -NFDSDTNVVDVAVRRLRAKLDEGFEKKLLHTVWGMGYVF 219 >gi|260577651|ref|ZP_05845587.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC 43734] gi|258604197|gb|EEW17438.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC 43734] Length = 240 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 45/224 (20%), Positives = 82/224 (36%), Gaps = 10/224 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + G ++ DV ++ L LE Sbjct: 16 LVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDETRRFSPDVVVLDLGL--PELDGLE 73 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR S ++ ++ S + G DD + KP RE++ RV A+ RR + S Sbjct: 74 VCRRIRTFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRRPRTS 133 Query: 123 NNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + V L E +L L G+ + + + + Sbjct: 134 TTPPQVTTPLIVGDLILDPVAHQVRVGETTVELTGTEFELLVALALRPGQVLTRHDLVTE 193 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYS 219 ++ +E +V+ HI LR+KL G +D+ R +GY Sbjct: 194 VWDTT-WVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGYR 236 >gi|229108261|ref|ZP_04237882.1| Two-component response regulator [Bacillus cereus Rock1-15] gi|228675174|gb|EEL30397.1| Two-component response regulator [Bacillus cereus Rock1-15] Length = 225 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 43/220 (19%), Positives = 75/220 (34%), Gaps = 6/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L+DD + + G + S E + ++ Sbjct: 4 ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIM--MPKMDGW 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E + IR+ S +P+I ++ + G DD V KP H E+ R Sbjct: 62 ETCKKIRSFSNIPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEEL-FARIEAVLRRTN 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + + I V E L E +L + + + + Q+ I+GL Sbjct: 121 EHKQIQYHGIVWDETKHFVSVHNEELLLTPIEFSLLGLFLRHVNYVLNRDQLIERIWGL- 179 Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219 + E+ V+SHI LR KLR + + +GY Sbjct: 180 NTNTEDRTVDSHIRNLRDKLRKANFPIDHHLKTVYGVGYR 219 >gi|224541807|ref|ZP_03682346.1| hypothetical protein CATMIT_00979 [Catenibacterium mitsuokai DSM 15897] gi|224525275|gb|EEF94380.1| hypothetical protein CATMIT_00979 [Catenibacterium mitsuokai DSM 15897] Length = 231 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 44/227 (19%), Positives = 88/227 (38%), Gaps = 13/227 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ L +G + ++ + L + + ++ Sbjct: 5 IMVVDDDKDIREVIQVLLSSEGYEVIEASNGKEALELVDDDTDLII---LDVMMPEMNGY 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---------ILARV 112 + ++R ++ P++ ++ F SG DD + KP + E V Sbjct: 62 QACVLLREKTKAPILFLTAKGQDSDKTLGFSSGGDDYLTKPFSYNELNGRVKALLRRYHV 121 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + +TG I V S R + GE L E ILEYL+ N+ + ++ +Q Sbjct: 122 YQGKGTTQEKQITYKTGNIEVNSAKRTASIDGEKLNLTDLEYNILEYLLMNKQQVISPSQ 181 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218 +F AI+ N + HI LR+K+ + + + + GY Sbjct: 182 LFEAIWHEEYYYGANNTIMVHIRHLRQKIEKDPTNPEHIKTIWGKGY 228 >gi|219667582|ref|YP_002458017.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219537842|gb|ACL19581.1| two component transcriptional regulator, winged helix family [Desulfitobacterium hafniense DCB-2] Length = 228 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 39/227 (17%), Positives = 89/227 (39%), Gaps = 10/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + + +G ++ S D+ ++ L Sbjct: 4 ILIIEDDVNIAELERDYLQLNGYQVDIVLDGATGLKKAVSGTYDILIVDLML--PQLDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + +R ++P+I +S + D G DD + KP E++AR+ + +R + Sbjct: 62 EIIKEVRKKLEIPIIVLSARSEDIDKIRGLDYGADDYLTKPFSPAELMARIRSHLKRYER 121 Query: 122 SNNRAE------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + + + + + V G+ +E +L + +N +K +IF Sbjct: 122 LTGKHQGIEVINHRGLEINTASHKVYVNGKEVQFTAKEYELLLFFASNPNILFSKERIFD 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 ++G + + V HI K+RKK+ + + +++ GY + Sbjct: 182 LLWGA-EYYGDLATVPVHIQKIRKKIERDPANPEYIETVWGTGYRFN 227 >gi|148261169|ref|YP_001235296.1| two component transcriptional regulator [Acidiphilium cryptum JF-5] gi|146402850|gb|ABQ31377.1| two component transcriptional regulator, winged helix family [Acidiphilium cryptum JF-5] Length = 262 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 42/229 (18%), Positives = 87/229 (37%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ + + + ++ L GE + Sbjct: 30 ILVVDDDREIRELLARFLERQRFRVTAVRDAREARRAYLNGHYQLVVLDLML--PGESGI 87 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R +R SQVP+I ++ + + G DD V KP + RE++AR+ A+ RR+ Sbjct: 88 DFARWLRGESQVPIIMLTALGEEPDRIIGLELGADDYVTKPFNPRELVARIRAVLRRVGE 147 Query: 122 SNNRAETGPIRVFSDGRDP---------EVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + R++ + G PL E +L L+ + + + Sbjct: 148 NETPGRESSARLYRFAGWVLETSRRRLLDPHGVEVPLTGGEYDLLLALLDRPNRVLTRDM 207 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 + + G + ++ IS+LR+KL + + + R GY + Sbjct: 208 LLDLLRGRQAGPFD-RAIDVAISRLRRKLEDDGRHAQIIKTVRGGGYVL 255 >gi|325922587|ref|ZP_08184341.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Xanthomonas gardneri ATCC 19865] gi|325546937|gb|EGD18037.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Xanthomonas gardneri ATCC 19865] Length = 242 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 47/227 (20%), Positives = 95/227 (41%), Gaps = 12/227 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD ++ G ++ ++ + R D+ ++ GE L Sbjct: 12 LVVDDDPDLRKLIGEFLSAHGYQVDVAENVAEMRKSIAQRRPDLIVLDVM--MPGEDGLS 69 Query: 63 LPRIIRAHSQVP-LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 R + + P +I +S + + + G DD + KP + RE+LARV A+ RR + Sbjct: 70 AARALASERGSPAVIMLSALGNDTDRIIGLEVGADDYLAKPCNPRELLARVRALLRRSQA 129 Query: 122 SNNRAETGPIRVFSDGRD--------PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 SN +A+ G + G L E +L + + + +++ Q+ Sbjct: 130 SNEQADHRGNVYEFAGWRLDVVRRDLRDPTGIFINLSDGEFALLRTFVEHPQRVLSRDQL 189 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G D V + ++S IS+LR+K+ ++ + + + R GY + Sbjct: 190 LDYARGR-DTDVYDRAIDSQISRLRRKINERVHTELIRTVRNEGYML 235 >gi|300868433|ref|ZP_07113054.1| two component transcriptional regulator [Oscillatoria sp. PCC 6506] gi|300333567|emb|CBN58242.1| two component transcriptional regulator [Oscillatoria sp. PCC 6506] Length = 255 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 43/219 (19%), Positives = 84/219 (38%), Gaps = 4/219 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L++ + G + + L + + + I+ L GE L Sbjct: 37 LLVETDEALAQQVSLDLKSSGYEPVVATDIAGGQHLAAELQPALIVIDRML--PGEAGLT 94 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L +R P++ + +++ + + G DD KP E L V + Sbjct: 95 LCNHLRNTGNRVPVLLLMARDTVEDRVACLECGADDYFLKPYRTEEFLQLVRLYLQPDTT 154 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 G + + R G L +E +L+YLM + + + + QI ++G + Sbjct: 155 EVEELRFGELVLDLSTRRAFRNGRGIDLTMKEYELLKYLMEHSREVLTREQILENVWG-Y 213 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D E NV+E +I LR K+ ++ + + R +GY + Sbjct: 214 DFLGESNVIEVYIRYLRLKIEDEGEKRLIQTVRGVGYVL 252 >gi|282866884|ref|ZP_06275918.1| two component transcriptional regulator, winged helix family [Streptomyces sp. ACTE] gi|282558283|gb|EFB63851.1| two component transcriptional regulator, winged helix family [Streptomyces sp. ACTE] Length = 236 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 88/235 (37%), Gaps = 24/235 (10%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 + ++D ++++ G ++ + R D++ ++ + G + Sbjct: 7 LFVEDDDVIREATQLALERVGFTVTAVPDGLLGLEAFRADRPDIALLDVMV--PGLDGVS 64 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-----------------HH 105 L R IR S VP+I +S + ++G DD V KP H Sbjct: 65 LCRRIRDESTVPVIMLSARADAIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRRFGHA 124 Query: 106 REILARVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRG 165 + ++ G + + ++G + G L E R+L + G Sbjct: 125 SGAGGGPEGGTGHVDGTDGVLVFGDVEIDTEGMEVRRGGAHVSLTPTEMRLLLEFSSAPG 184 Query: 166 KRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +++ ++ ++ + + VV+ H+ +LR K+ G D +++ R GY + Sbjct: 185 TVLSRDRLLERVWD-YGWGGDTRVVDVHVQRLRTKI----GQDRIETVRGFGYKL 234 >gi|269796544|ref|YP_003315999.1| CheY-like receiver domain/winged-helix DNA-binding domain-containing response regulator [Sanguibacter keddieii DSM 10542] gi|269098729|gb|ACZ23165.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Sanguibacter keddieii DSM 10542] Length = 271 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 50/223 (22%), Positives = 97/223 (43%), Gaps = 9/223 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + + +G + + L DV ++ L LE Sbjct: 26 LVVDDEPNLAELLTSALRYEGWDVSTALDGQTAVRLARETVPDVIVLDIMLG--DIDGLE 83 Query: 63 LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILAR----VAAIYR 117 + R IR + VP++ ++ S++ + +G DD V KP E++AR + Sbjct: 84 VLRRIRQQQEGVPVLFLTARDSVEDRVAGLTAGGDDYVTKPFSLEEVVARLRGLLRRAGA 143 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 R G + + D + + G+ L E +L YLM N + ++K+QI + Sbjct: 144 SAARDEARLVVGDLTLDEDSHEVDRAGQEIHLTATEFELLRYLMRNARRVMSKSQILDRV 203 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + +D + N+VE +IS LR+K+ + + + R +GY + Sbjct: 204 W-QYDFGGQANIVELYISYLRRKI-DAGREPMIHTLRGVGYVL 244 >gi|229068336|ref|ZP_04201639.1| Two-component response regulator [Bacillus cereus F65185] gi|229177176|ref|ZP_04304565.1| Two-component response regulator [Bacillus cereus 172560W] gi|228606357|gb|EEK63789.1| Two-component response regulator [Bacillus cereus 172560W] gi|228714797|gb|EEL66669.1| Two-component response regulator [Bacillus cereus F65185] Length = 225 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 43/220 (19%), Positives = 75/220 (34%), Gaps = 6/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L+DD + + G + S E + ++ Sbjct: 4 ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIM--MPKMDGW 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E + IR+ S +P+I ++ + G DD V KP H E+ R Sbjct: 62 ETCKKIRSFSNIPIIMVTARDQTVDVVQGLKLGADDYVTKPFHEEEL-FARIEAVLRRTN 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + + I V E L E +L + + + + Q+ I+GL Sbjct: 121 EHKQIQYHGIVWDETKHFVSVHSEELLLTPIEFSLLGLFLRHVNYVLNRDQLIERIWGL- 179 Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219 + E+ V+SHI LR KLR + + +GY Sbjct: 180 NTNTEDRTVDSHIRNLRDKLRKANFPIDHHLKTVYGVGYR 219 >gi|330812221|ref|YP_004356683.1| response regulator, OmpR family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327380329|gb|AEA71679.1| putative response regulator, OmpR family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 226 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 56/219 (25%), Positives = 96/219 (43%), Gaps = 5/219 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A + D + +G + Q SA D+ ++ L Sbjct: 4 ILIVEDEAAIADTLVFALQGEGFDTTWLSLGAAALEHQKSAPADLIILDVGL--PDISGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120 E + +R S VP+I ++ + + G DD V KP RE+ ARV AI R Sbjct: 62 ETCKNLRRFSDVPVIFLTARDGEIDRVVGLEIGADDYVVKPFSPREVAARVRAILKRVAP 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + T +V +D +G+ L R E R+L L+ + ++ Q+ A+ G+ Sbjct: 122 RPAAESSTALFQVDADRVQINYRGKPLNLTRHEFRLLNCLLEQPERVFSREQLLDAL-GV 180 Query: 181 FDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGY 218 +A E ++SHI +R KLR + +P+ + R LGY Sbjct: 181 ASDAGYERSIDSHIKSVRAKLRLVRAEAEPIQTHRGLGY 219 >gi|291536113|emb|CBL09225.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Roseburia intestinalis M50/1] Length = 224 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 44/225 (19%), Positives = 90/225 (40%), Gaps = 10/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ +G + + + D+ ++ Sbjct: 4 ILVVDDEDKIRAIIRKYGEFEGYEIAEAHDGMEAVEICRKEDFDLIILDVM--MPELDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 R IR ++P+I +S + F+ G+DD V KP RE++ RV + R Sbjct: 62 STCREIRKFKEIPVIMLSARGEEYDKIHGFELGIDDYVVKPFSPRELMMRVKVVISRNNK 121 Query: 122 SNNRAETGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + R + V GR V G+ + +E +L YL+ NR + + ++ + Sbjct: 122 KDVRGGHEIFQAEGLVVDFTGRTVTVDGKRVEMSPKEYELLFYLVRNRNIALDREKLITE 181 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++G +D ++ +++HI LR L + + R +GY + Sbjct: 182 VWG-YDYYGDDRTLDTHIKLLRSSLGEY--RKFLVTLRGVGYRFE 223 >gi|227834015|ref|YP_002835722.1| two-component system response regulator [Corynebacterium aurimucosum ATCC 700975] gi|262183498|ref|ZP_06042919.1| two-component system response regulator [Corynebacterium aurimucosum ATCC 700975] gi|227455031|gb|ACP33784.1| two-component system response regulator [Corynebacterium aurimucosum ATCC 700975] Length = 234 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 51/224 (22%), Positives = 94/224 (41%), Gaps = 10/224 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + G + NS + D ++ G E Sbjct: 10 LVVDDEPNIVELLTVSLKFQGFDVYSANSGNEALRIAREINPDAYIMDVM--MPGMDGFE 67 Query: 63 LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L +RA P++ ++ S+ + G DD V KP E++ R+ I RR Sbjct: 68 LLGKLRAEGLDGPVLYLTAKDSVDQRIHGLTIGADDYVTKPFSLEEVITRLRVILRRGNA 127 Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 +++ + + D + GE+ L E +L YLM NR ++K++I Sbjct: 128 VDDQDGSATMTYADLTLNDDTHEVTKAGEIVELSPTEFNLLRYLMQNREVVLSKSKILDN 187 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +D + NVVES+IS LR+K+ + + + R +GY + Sbjct: 188 VW-HYDFGGDGNVVESYISYLRRKI-DTGDTPLIHTVRGVGYVL 229 >gi|255305157|ref|ZP_05349329.1| DNA-binding response regulator [Clostridium difficile ATCC 43255] Length = 228 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 39/225 (17%), Positives = 88/225 (39%), Gaps = 6/225 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + G +G S++ ++E + D+ ++ L Sbjct: 4 ILLVEDDLSLIYGLEYSIQKNGFSVDVARTVEEALQIYKEKNYDLLLLDVSL--PDGDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + +R S VP+I ++ + D G DD + KP E+++R+ A+ RR Sbjct: 62 DICKRVREASNVPIIFLTASDEEVNVVMGLDMGGDDYITKPFKLNELISRIKALLRRYNF 121 Query: 122 SNNRAETGPIRVFSDG---RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++ + L E ++L LM N+ + + I ++ Sbjct: 122 TSENVTELKSNNITVKLLENRVFKNEIELELTTAEYKLLCLLMKNKNIVLTRKNILDKLW 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSIDW 222 V++N + ++ +LR K+ + + + R +GY + Sbjct: 182 DGNGSFVDDNTLSVYVRRLRNKIEDNPENPKILLTVRRMGYKWNV 226 >gi|88855731|ref|ZP_01130394.1| two-component system, regulatory protein [marine actinobacterium PHSC20C1] gi|88815055|gb|EAR24914.1| two-component system, regulatory protein [marine actinobacterium PHSC20C1] Length = 233 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 45/220 (20%), Positives = 97/220 (44%), Gaps = 4/220 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + ++G ++ + L +A D + ++ L G Sbjct: 12 ILVVEDEPEMAALLVRGLQEEGYAVTVAGNGIDAMTLAGAASFDAAVLDVML--PGMSGF 69 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL R +R S + ++ ++ +L + D+G DD + KP E+ AR+ A+ RR Sbjct: 70 ELCRRLREKSTGIAIMLLTARDALDDRVRGLDAGADDYLTKPFEFAELAARLRALRRRDL 129 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + +R + G + + G L R E +L L N + + + +I I+G Sbjct: 130 IGASRIDVGGLHIDMTRHAISAGGTPLRLSRTEFELLRLLAENHTRILPRAEIIDTIWGA 189 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ N+V+ ++ +RKKL + + + R +G+ + Sbjct: 190 AAY-IDANIVDQYVRYVRKKLDSVGSPVSIVAVRGVGFQL 228 >gi|296159399|ref|ZP_06842224.1| two component transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] gi|295890383|gb|EFG70176.1| two component transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] Length = 227 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 39/222 (17%), Positives = 92/222 (41%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + G +++ + + D+ ++ L G+ Sbjct: 3 ILIVEDEIKTGTYLRKGLTEAGFTVDWVADGVTGQHRALTEDYDLIILDVML--PGQDGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120 + + +R ++ ++ + + + G DD + KP E+LARV +I R Sbjct: 61 TVLKNLRRTHSTSVLLLTARDEVDDKVRGLEMGGDDYLGKPFDFAELLARVRSILRRGQP 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + + R QG+ L +E +L LM +G+ + ++ I S ++ + Sbjct: 121 RDAASLQVSNLVLDLTRRKATRQGDTILLTAKEFALLWLLMRRQGEILPRSTIASQVWDM 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + + NVV++ I +LR K+ + + + R +GY ++ Sbjct: 181 -NFDSDTNVVDAAIRRLRAKVDDNYEPRLIHTVRGMGYVLEE 221 >gi|269794678|ref|YP_003314133.1| CheY-like receiver domain/winged-helix DNA-binding domain-containing response regulator [Sanguibacter keddieii DSM 10542] gi|269096863|gb|ACZ21299.1| response regulator with CheY-like receiver domain and winged-helix DNA-binding domain [Sanguibacter keddieii DSM 10542] Length = 235 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 44/222 (19%), Positives = 88/222 (39%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ +D L + +G + D+ ++ L Sbjct: 4 ILIAEDDELQAELARRYLTREGYQATVVGDGRSALEAVRGSAVDLLVLDVML--PEMDGF 61 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R +RA P++ ++ L + G DD ++KP RE++AR A+ RR + Sbjct: 62 AVCRALRAAGDETPILMLTARSEEDDLLVGLELGADDYLSKPYSPREMVARARALLRRSR 121 Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++ T V + V G L R E ++L L + G +++ Q+ ++G Sbjct: 122 TVDDGPVTVGPLVVDPRRHEASVGGTPIDLTRAEMQLLTLLAEHAGLVLSRPQLLRHLHG 181 Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 DE E +++H+ LR K+ G + + + +GY + Sbjct: 182 -SDEYTTERTIDTHMKNLRSKVDAVFDGPELLRTVYGVGYKL 222 >gi|255527565|ref|ZP_05394430.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|255508731|gb|EET85106.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] Length = 367 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 47/219 (21%), Positives = 84/219 (38%), Gaps = 5/219 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + D+G L L + ++ L G Sbjct: 150 ILVVDDEESIVEFIKMGLEDEGFILHTAFDGYEAISLAKELNPSIIILDIML--PGINGY 207 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ I+ +I ++ + + D G DD + KP +E+LAR+ A R Sbjct: 208 EVCSEIKKWVNASIIMLTAKDDIDDRVKGLDLGADDYMIKPFSFKELLARINARLRNSLP 267 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEV-FPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 N + +D L E +L+YL+ N G ++K I ++G Sbjct: 268 ELNDVMSIGNFYLNDKAHEIYFKNNLLELSPTEYNLLKYLLFNNGLVLSKPTILEKVWG- 326 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 FD + N+VE +I LR K+ + + + R +GY Sbjct: 327 FDFNGDVNIVEVYIRYLRDKIGDN-EHSIIRTVRGVGYK 364 >gi|188990198|ref|YP_001902208.1| two-component system response regulator protein [Xanthomonas campestris pv. campestris str. B100] gi|167731958|emb|CAP50144.1| two-component system response regulator protein [Xanthomonas campestris pv. campestris] Length = 280 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 47/227 (20%), Positives = 97/227 (42%), Gaps = 12/227 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD ++ G ++ ++ + R D+ ++ GE L Sbjct: 50 LVVDDDPDLRKLIGEFLSAHGYQVDVAENVAEMRKRITQRRPDLIVLDVM--MPGEDGLS 107 Query: 63 LPRIIRAHSQVP-LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 R + + P +I +S + + + G DD + KP + RE+LARV A+ RR +V Sbjct: 108 AARSLASERGSPAVIMLSALGNDTDRIIGLEVGADDYLAKPCNPRELLARVRALLRRSQV 167 Query: 122 SNNRAETGPIRVFSDGRD--------PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 ++++AE G + G L E +L + + + +++ Q+ Sbjct: 168 TSDQAEPRGNVYEFAGWRLDVVRRDLRDPTGIFINLSDGEFALLRTFVEHPQRVLSRDQL 227 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G D V + ++S IS+LR+K+ ++ + + + R GY + Sbjct: 228 LDYARGR-DTDVYDRAIDSQISRLRRKINERVHTELIRTVRNEGYML 273 >gi|160945777|ref|ZP_02093003.1| hypothetical protein FAEPRAM212_03310 [Faecalibacterium prausnitzii M21/2] gi|158443508|gb|EDP20513.1| hypothetical protein FAEPRAM212_03310 [Faecalibacterium prausnitzii M21/2] Length = 231 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 46/223 (20%), Positives = 93/223 (41%), Gaps = 6/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGV-SLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 +++DD + + ++F G + +S E + D+ ++ G Sbjct: 6 ILVVDDETDLLEMVKSIFTRAGFTQILTASSGEAALKMCEEQEPDMMILDVM--MPGMDG 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119 + +R S++P++ ++ + F++G DD + KP +E+L RV AI R Sbjct: 64 FAALKELRKTSKIPVLMLTARGEAEDKFVGFENGADDYLLKPFLPKELLFRVQAILKRVY 123 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + V + + GE L +E ++ E L N+G+ V + AI G Sbjct: 124 PEKERKVFFEAATVDLEKAIVQRSGENISLTAKEFQLFEKLYENQGRIVTTGALCQAICG 183 Query: 180 LFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 F E+ + +HI LR+K+ + + + +GY ++ Sbjct: 184 DF-WQGYESTLATHIRHLREKIEENPSKPVALVTIKGIGYRLN 225 >gi|323483855|ref|ZP_08089232.1| aspartate carbamoyltransferase [Clostridium symbiosum WAL-14163] gi|323402809|gb|EGA95130.1| aspartate carbamoyltransferase [Clostridium symbiosum WAL-14163] Length = 231 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 41/224 (18%), Positives = 88/224 (39%), Gaps = 9/224 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD ++ + G ++ + ++ ++ ++ + G + E Sbjct: 7 LIVDDEPAIRKLLTRVAASCGYESLTASNGHEAIVMSRDSKINLILLDIMMNGND-EGFE 65 Query: 63 LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117 + R +RA +P+I +S TL D G DD + KP + ++ A + + Sbjct: 66 VIRRLRASGNEIPIIVLSGRTEDFDTLYGLDIGADDYIGKPFNPVVLGAKMKALIRRDMK 125 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + GP S + PL RE +++ + N G+ K Q++ + Sbjct: 126 ASRPLPDFITAGPFCYNSMTMELFKDNRPIPLSSRENVLMKLFLCNAGRVFTKEQLYEHV 185 Query: 178 YGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220 + V+ N + +IS LR K+ + + + LGY Sbjct: 186 WNG--SVVDANTIMVYISHLRNKIEEDPKNPRYLKTVWGLGYKF 227 >gi|319652565|ref|ZP_08006680.1| response regulator receiver [Bacillus sp. 2_A_57_CT2] gi|317395819|gb|EFV76542.1| response regulator receiver [Bacillus sp. 2_A_57_CT2] Length = 223 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 40/221 (18%), Positives = 87/221 (39%), Gaps = 7/221 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD A ++ F +G + Q+ + D+ ++ L Sbjct: 4 ILIIDDEADMRKLLADYFEVNGYHIMTAKDGNEAVR-QAEKQPDIILLDIN--MPEINGL 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118 ++ R IR++ P++ ++ + F +G DD + KP E + R Sbjct: 61 DVCRKIRSYVSCPILFLTARVEDADKISGFQAGGDDYIQKPFSIHELGARVDAHLRREMR 120 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + +G + + R L ++E I+E L + G K +++ ++ Sbjct: 121 NQKKTTVKFSGDLVIDYSERALYCNDIQISLAKKEFDIIELLSKHPGMVFDKERMYERVW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 G +E + +V+ HI ++R KL+ +++ +GY Sbjct: 181 GT-NEEGDSSVIPEHIRRIRSKLKEHGCGSKIETVWGVGYK 220 >gi|300717134|ref|YP_003741937.1| transcriptional activator [Erwinia billingiae Eb661] gi|299062970|emb|CAX60090.1| Transcriptional activator [Erwinia billingiae Eb661] Length = 229 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 39/224 (17%), Positives = 80/224 (35%), Gaps = 6/224 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 + ++D G+ G +++ + D ++ L G Sbjct: 3 ILFVEDEEKTSSYLSRALGESGFTVDVSADGTEGLYYALEFDYDAVILDVML--PGMDGY 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118 + IRA Q P++ +S S+ + G DD + KP E + + Sbjct: 61 RVLEGIRASKQTPVLMLSARGSVDERVKGLRLGADDYLPKPFSLIELVARIQALVRRRAT 120 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + + R G L +E +L L ++G+ ++K I ++ Sbjct: 121 DGADITQLHIHDLHLDLLARRVVRAGNRLELTAKEFALLSLLARHQGEILSKMMIAEQVW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + + + NVVE I +LR K+ + + R +GY ++ Sbjct: 181 DM-NFDSDANVVEVAIKRLRAKIDAPFDVKLLHTVRGMGYVLEV 223 >gi|229087374|ref|ZP_04219514.1| DNA-binding response regulator [Bacillus cereus Rock3-44] gi|228695942|gb|EEL48787.1| DNA-binding response regulator [Bacillus cereus Rock3-44] Length = 231 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 42/226 (18%), Positives = 91/226 (40%), Gaps = 9/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G ++ + + + + ++ L Sbjct: 4 ILIVEDDPNISSLLQSHIQKYGYEAIVADNFDDIMDSFNRVKPHLVLLDVNL--PKFDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 R IR S P+I IS + +SG DD + KP H+ ++A++ RR+ Sbjct: 62 YWCRQIRHESTCPIIFISARAGEMEQIMAIESGADDYITKPFHYDVVMAKIKGQLRRIYG 121 Query: 122 SNNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + I F + + E L ++E + E L++ + ++ + + Sbjct: 122 DYAPNISERIVEVEGLKLFPERPEIHFGAEQVLLTKKEAILAEMLLSKFPRTASREDLLA 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 A++ + VEEN + +I++LRKK + +++ R LGY + Sbjct: 182 ALWD-DESFVEENTLNVNITRLRKKFNELGIENAIETVRGLGYRFN 226 >gi|227889684|ref|ZP_04007489.1| response regulator [Lactobacillus johnsonii ATCC 33200] gi|227849827|gb|EEJ59913.1| response regulator [Lactobacillus johnsonii ATCC 33200] Length = 236 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 43/231 (18%), Positives = 95/231 (41%), Gaps = 13/231 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D V + F + ++ + + + L + + Sbjct: 4 ILMVEDDNSVAEMMKMFFSKEQWDVDIAKDGVEAVEMFKADPSSYDIVTLDLNLPKKDGI 63 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ + IRA S +P+I ++ S + G D+ V KP ++AR+ A+YRR Sbjct: 64 EVAKEIRAISISIPIIMLTARDSETDQILGLGIGADEYVTKPFSPLALIARIKALYRRSH 123 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPL----------PRRERRILEYLMANRGKRVAK 170 + + + I+ + ++ + + +E +L + + + ++ Sbjct: 124 LEKDMHASNGIKYDVVTKHLKISKDRREVRFDDKVVEGLTPKEFDLLYTMAQKQKQVFSR 183 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ ++G ++ EE V++HI KLR+KL K G V + +GY D Sbjct: 184 DKLLELVWG-YEFFGEERTVDAHIKKLRQKLE-KAGPQVVQTVWGVGYKFD 232 >gi|227499590|ref|ZP_03929697.1| response regulator [Anaerococcus tetradius ATCC 35098] gi|227218349|gb|EEI83603.1| response regulator [Anaerococcus tetradius ATCC 35098] Length = 234 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 41/228 (17%), Positives = 91/228 (39%), Gaps = 13/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ G S E + R ++ ++ L G Sbjct: 8 ILIVDDEDPIRQFMKINLDYQGYQTVEAASGEEAIKVFEKERPALAILDIML--PGMSGY 65 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ IR +I +S + + G DD + KP + +E++ RV ++ RR+ Sbjct: 66 EVCEKIRTEAPMTGIIMVSAKSQDIDKILGLEKGADDYIIKPFNPQELILRVRSLMRRVN 125 Query: 121 VSNNRAETG--------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 S ++A P + + + E IL+Y + N+GK + + + Sbjct: 126 FSQDKANNKIKESISDGPFTLDLYAKSFYKNEREIDVTPTEFTILQYFIQNKGKAMTRDE 185 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYS 219 I + +G + + + +V+ +I ++R K+ + + +++ GY Sbjct: 186 IMTKTWGE-NYSNDTKIVDVNIRRIRAKIEDNPAKPEYIETVWGTGYR 232 >gi|183599453|ref|ZP_02960946.1| hypothetical protein PROSTU_02932 [Providencia stuartii ATCC 25827] gi|188021700|gb|EDU59740.1| hypothetical protein PROSTU_02932 [Providencia stuartii ATCC 25827] Length = 224 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 53/224 (23%), Positives = 103/224 (45%), Gaps = 5/224 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D AL++ + G ++ + ++ + D++ ++ L E L Sbjct: 3 ILIVEDNALLRHHLTVQLKELGHQVDAAEDAKEADYFLRESCPDIAMVDLGL--PDEDGL 60 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + + R+ +P++ ++ S Q + +SG DD V KP H E++AR+ A+ RR Sbjct: 61 SMIKRWRSTQINIPVLVLTARESWQEKVQALNSGADDYVTKPFHLEELVARMQALMRRNS 120 Query: 121 VSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++ E + ++ V GE L E I+E L+ N GK V+K + +Y Sbjct: 121 GLASQVLELDGFVIDLSRKEFTVNGEPVKLTAFEYTIIETLLRNNGKVVSKDSLMRQLY- 179 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 E E + ++ + +LRKK++ D + + R GY D N Sbjct: 180 PDAELRESHTIDVLMGRLRKKIQQFHANDVIVTVRGQGYRFDVN 223 >gi|153008164|ref|YP_001369379.1| two component transcriptional regulator [Ochrobactrum anthropi ATCC 49188] gi|239833135|ref|ZP_04681464.1| Transcriptional regulatory protein chvI [Ochrobactrum intermedium LMG 3301] gi|151560052|gb|ABS13550.1| two component transcriptional regulator, winged helix family [Ochrobactrum anthropi ATCC 49188] gi|239825402|gb|EEQ96970.1| Transcriptional regulatory protein chvI [Ochrobactrum intermedium LMG 3301] Length = 239 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 43/230 (18%), Positives = 80/230 (34%), Gaps = 14/230 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 L+DD + +G +E + + +++ + + Sbjct: 10 IALVDDDRNILTSVSIALESEGYRVETYTDGASALDGLMARPPNLAIFDI--KMPRMDGM 67 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----------EILAR 111 EL R +R S +P+I ++ L G DD + KP R +A Sbjct: 68 ELLRRLRQKSDLPVIFLTSKDDEIDELFGLKMGADDFITKPFSQRLLVERVKAVLRRVAA 127 Query: 112 VAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + E G + + + +GE L E IL L G ++ Sbjct: 128 RDGTAKPTGQQAKSLERGQLVMDQERHTCTWKGEPVTLTVTEFLILHSLAQRPGVVKSRD 187 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + A Y V++ ++SHI +LRKK + F+ +++ +GY Sbjct: 188 ALMDAAYDE-QVYVDDRTIDSHIKRLRKKFKAVDDDFEMIETLYGVGYRF 236 >gi|323692857|ref|ZP_08107083.1| hypothetical protein HMPREF9475_01946 [Clostridium symbiosum WAL-14673] gi|323503086|gb|EGB18922.1| hypothetical protein HMPREF9475_01946 [Clostridium symbiosum WAL-14673] Length = 231 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 41/224 (18%), Positives = 88/224 (39%), Gaps = 9/224 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD ++ + G ++ + ++ ++ ++ + G + E Sbjct: 7 LIVDDEPAIRKLLTRVAASCGYESLTASNGHEAIVMSRDSKINLILLDIMMNGND-EGFE 65 Query: 63 LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117 + R +RA +P+I +S TL D G DD + KP + ++ A + + Sbjct: 66 VIRRLRASGNEIPIIVLSGRTEDFDTLYGLDIGADDYIGKPFNPVVLGAKMKALIRRDMK 125 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + GP S + PL RE +++ + N G+ K Q++ + Sbjct: 126 ASRPLPDFITAGPFCYNSMTMELFKDKRPIPLSSRENVLMKLFLCNAGRVFTKEQLYEHV 185 Query: 178 YGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220 + V+ N + +IS LR K+ + + + LGY Sbjct: 186 WNG--SVVDANTIMVYISHLRNKIEEDPKNPRYLKTVWGLGYKF 227 >gi|300813010|ref|ZP_07093393.1| putative DNA-binding response regulator [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300495980|gb|EFK31119.1| putative DNA-binding response regulator [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 225 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 46/220 (20%), Positives = 91/220 (41%), Gaps = 5/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++D +++ + + GF+ + ++R D+ ++ L G K+ Sbjct: 4 IWCVEDDESIREIEMYTLESMNFKVRGFDDGQSFFKALENSRPDLVILDLMLPDEDGSKI 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119 L R A +P+I S + + DSG DD + KP E+++RV A+ R Sbjct: 64 LHRLRSTSATEDLPVIIASAKAAEYDKVKNLDSGADDYLTKPFGMMEMVSRVKAVLRRTN 123 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + ++ E I++ + G L +E +L+ L+ + G ++ +I I+ Sbjct: 124 RKKEDKIEKDGIKILLKRHEVFENGHQVDLTLKEYGLLKLLITHPGTVFSREEIMDQIW- 182 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 E V+ H+ LR KL +++ R +GY Sbjct: 183 ETGFYGETRTVDVHVRTLRHKLGEAG--KHIETVRGVGYR 220 >gi|168216104|ref|ZP_02641729.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239] gi|182381612|gb|EDT79091.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239] Length = 226 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 40/223 (17%), Positives = 86/223 (38%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G + ++ + D+ ++ L L Sbjct: 4 ILIVEDEEKIARFIELELIHEGYKVIKADNGRTGLEIAERGEADLIILDVML--PEINGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117 E+ R IR S+VP+I ++ ++ + D+G DD + KP I + Sbjct: 62 EVLRRIRKVSEVPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKKRVF 121 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 +K + G + + L RE +L+ LM N+ + + + + Sbjct: 122 TVKKDEDVIRCGLLTLDKMRHKVMYDDTEIELTNREFTLLQILMENKNIVLTRDVLIEKV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G ++ E NV++ ++ LR K+ + + + R +GY I Sbjct: 182 CG-YNYVGETNVIDVYVRYLRTKIDDVFKVKIISTVRGVGYVI 223 >gi|167033182|ref|YP_001668413.1| two component transcriptional regulator [Pseudomonas putida GB-1] gi|166859670|gb|ABY98077.1| two component transcriptional regulator, winged helix family [Pseudomonas putida GB-1] Length = 238 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 45/230 (19%), Positives = 90/230 (39%), Gaps = 15/230 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD L++D A +G + ++ E E L S D+ ++ L G+ L Sbjct: 6 LIVDDDPLIRDLLQAYLSQEGYDVHCADTAEKAEALLGSQDVDLVLLDIRL--PGKDGLT 63 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R +R S+V +I I+ + + G DD V KP++ RE+++R + RR++ + Sbjct: 64 LTRELRVRSEVGIILITGRNDDIDRIVGLECGADDYVIKPLNPRELVSRAKNLIRRVRHA 123 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFP-----------LPRRERRILEYLMANRGKRVAKT 171 L E ++L + N G +++ Sbjct: 124 REVHPAPACAQSLKQFADWALDTDRRRLIDARGGQTLLTHGEFQLLSVFLRNSGHTLSRD 183 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220 Q+ I + + ++ + +LR+KL + + + GY Sbjct: 184 QLMDQIRNR-EWVPNDRSIDVLVGRLRRKLHDDPAEPQLIITIHGTGYLF 232 >gi|2353768|gb|AAB94871.1| DMSO/TMAO-response regulator [Rhodobacter sphaeroides] Length = 232 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 38/226 (16%), Positives = 82/226 (36%), Gaps = 11/226 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + + + + E + DV ++ G+ L Sbjct: 8 LVVEDDPVSRQTLAMYLRKENHEVSEARDGEQMRRVFPKGDVDVVMLDIN--MPGKDGLS 65 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R + S+V +I ++ + + G DD V KP + REIL R RR+ Sbjct: 66 ILRELPRQSEVGIIMVTSRKEDVDRIVALEFGADDYVTKPYNMREILPRAKNFARRVAAL 125 Query: 123 NNRAETGPIRVFS-------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 P F + G L R E +L +A+ G+ + + Q+ + Sbjct: 126 RLVRPDQPATTFDGWTLDAAHWALTDPAGNHVKLTRAEFELLATFVAHPGQVLTRDQLMN 185 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + G + ++ + ++R+K+ + + + +GY Sbjct: 186 HV-GRRGHETFDRTIDVLVRRIRRKIEADPSDPRLIVTVHGIGYVF 230 >gi|116662230|ref|YP_829285.1| two component transcriptional regulator [Arthrobacter sp. FB24] gi|116612982|gb|ABK05704.1| two component transcriptional regulator, winged helix family [Arthrobacter sp. FB24] Length = 227 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 50/220 (22%), Positives = 92/220 (41%), Gaps = 5/220 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L++D ++ + ++G ++ + W + DV ++ L K + Sbjct: 4 LLVEDEKMLAETVRRGLVNEGFVVDVTHDGVSGLWAATENPYDVILLDLMLPLK--NGYD 61 Query: 63 LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120 + + +R P++ ++ D FD G DD + KP ++AR+ A I R Sbjct: 62 VLKELRERLVWTPVLMLTAKDGEYDQTDAFDLGADDYLTKPFSFIVLVARIRALIRRGAP 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 G + + R V L RE +L YLM + G+ V+K QI ++ Sbjct: 122 ERPVTLTVGSLTLDPGSRSVRRGDTVIELTAREYGLLHYLMRSHGQVVSKAQILDNVWD- 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +NVVE +I LR+K+ G + + R +GY + Sbjct: 181 PAFEGGDNVVEVYIGYLRRKIDVPFGLQTLATVRGMGYML 220 >gi|295688443|ref|YP_003592136.1| winged helix family two component transcriptional regulator [Caulobacter segnis ATCC 21756] gi|295430346|gb|ADG09518.1| two component transcriptional regulator, winged helix family [Caulobacter segnis ATCC 21756] Length = 223 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 49/223 (21%), Positives = 93/223 (41%), Gaps = 6/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++I+D + G +E E + DV ++ + G +V Sbjct: 3 ILIIEDDLEAAGAMAHGLTEAGYEVEHAPDGEAGLGVAQKGGFDVLIVDRMMPKMDGVQV 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA--AIYRR 118 +E R Q P++ +S + + +G DD + KP E++ARV + R Sbjct: 63 VETLRR--EGDQTPVLFLSALGEINDRVTGLRAGADDYLVKPYAFPELMARVEALSRRRE 120 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + G + + R QG+ L RE ++LE++M + G+ V +T + ++ Sbjct: 121 TGAVATTLKVGELEMNLINRTVHRQGKEIDLQPREFQLLEFMMRHAGQSVTRTMLLEKVW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + NV++ HIS+LR K+ + + R GY +D Sbjct: 181 -EYHFDPQTNVIDVHISRLRSKIDKGFDRAMLQTVRGAGYRLD 222 >gi|256390046|ref|YP_003111610.1| two component transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256356272|gb|ACU69769.1| two component transcriptional regulator, winged helix family [Catenulispora acidiphila DSM 44928] Length = 222 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 42/221 (19%), Positives = 84/221 (38%), Gaps = 7/221 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L +D A + + +G + L + D+ ++ L G LE Sbjct: 5 LLAEDDAAISEPLARALRREGYEVTVRADGPGAL-LAGQSGVDLVVLDLGL--PGMDGLE 61 Query: 63 LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R +RA P++ ++ T+ D+G DD V KP E+ R Sbjct: 62 VCRRLRADGHTFPVLVLTARADEVDTVVGLDAGADDYVTKPFRLAEL-LARVRALLRRGT 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + +R+ + + + L +E +L L+ G+ V + Q+ ++ Sbjct: 121 PDLGNGVHGVRIDIESHRAYLGDQELNLTAKEFDLLRVLVREVGRVVTRDQLMREVWDTT 180 Query: 182 DEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 + ++ HIS LRKKL + + + R +G+ + Sbjct: 181 WWS-STKTLDMHISWLRKKLGDEASRPRFITTVRGVGFRFE 220 >gi|224419137|ref|ZP_03657143.1| two-component response regulator [Helicobacter canadensis MIT 98-5491] gi|253828072|ref|ZP_04870957.1| response regulator [Helicobacter canadensis MIT 98-5491] gi|313142643|ref|ZP_07804836.1| DNA-binding response regulator [Helicobacter canadensis MIT 98-5491] gi|253511478|gb|EES90137.1| response regulator [Helicobacter canadensis MIT 98-5491] gi|313131674|gb|EFR49291.1| DNA-binding response regulator [Helicobacter canadensis MIT 98-5491] Length = 222 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 49/221 (22%), Positives = 94/221 (42%), Gaps = 6/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAR-EDVSAIEAFLIGKGEKV 60 ++++D ++ + G+ +S + S R D++ ++ L Sbjct: 4 ILIVEDDLDMQKLLVDYLKKSGMEAIATDSPNEALEMLKSKRNFDLAVLDIML--PEMDG 61 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 LEL + IR S +P+I S + + + F+ G DD + K E++AR+ A+ +R Sbjct: 62 LELCKKIRQISDLPIIMSSARGDIGSKILGFERGADDYLAKSYEPIELVARINALLKRYS 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 +N G + V ++ ++G L E IL L++N+GK ++ + AI Sbjct: 122 -ANQVIHYGDLEVDNNKHKVTLEGYSIDLTPAEFEILNLLISNKGKPYSRESLSQAI-SS 179 Query: 181 FDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 +++HI LR KL + + S +GY Sbjct: 180 IAPDSSLRSIDTHIRNLRAKLGDDAKEPKYIQSVWGIGYKF 220 >gi|212213466|ref|YP_002304402.1| two-component response regulator [Coxiella burnetii CbuG_Q212] gi|212011876|gb|ACJ19257.1| two-component response regulator [Coxiella burnetii CbuG_Q212] Length = 245 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 41/232 (17%), Positives = 87/232 (37%), Gaps = 16/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + ++D G + + + D+ ++ G+ L Sbjct: 7 ILIVDDDSDIRDLLGKFLRRHGFEASLAKNGSEMQAILLKQAVDLVILDIM--MPGDDGL 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R +RA+S +P++ ++ + + G DD ++KP + RE+LARV AI RR + Sbjct: 65 TLCRQMRANSTIPILMLTAISEEVDRILGLEMGADDYLSKPFNPRELLARVRAILRRSQG 124 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFP------------LPRRERRILEYLMANRGKRVA 169 + L E +L L+ + ++ Sbjct: 125 GGGSLNGIGTNERVIYEFAGWSLDPAERRLKSPDSLEITLSSGEFDLLHALVQRSQQVLS 184 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + ++ + + + ++ IS+LR KL + + + R GY + Sbjct: 185 RDKLLD-LTKNREAGPFDRSIDIQISRLRHKLEQDPKNPQIIKTIRGGGYVL 235 >gi|150395862|ref|YP_001326329.1| two component transcriptional regulator [Sinorhizobium medicae WSM419] gi|150027377|gb|ABR59494.1| two component transcriptional regulator, winged helix family [Sinorhizobium medicae WSM419] Length = 233 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 48/222 (21%), Positives = 89/222 (40%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D F + G+ + + E ++ S DV ++ L L Sbjct: 7 ILIVEDDLEAAAYLAKAFREAGIVCDHASDGEAGLFMASENAYDVLVVDRML--PRRDGL 64 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118 L +R P++ +S + + +G DD + KP E+ V + Sbjct: 65 SLITELRRKDIHTPVLILSALGQVDDRVTGLRAGGDDYLPKPYAFSELLARVEVLGRRKG 124 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + G + + QG+ PL RE R+LEYLM N G+ V +T + ++ Sbjct: 125 APEQDMVYRVGDLELDRLSHSVRRQGKEIPLQPREFRLLEYLMKNAGQVVTRTMLLENVW 184 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + NV++ H+S+LR K+ + + R GY I Sbjct: 185 D-YHFDPQTNVIDVHVSRLRSKIEKDFDPPLLRTIRGAGYMI 225 >gi|297582974|ref|YP_003698754.1| winged helix family two component transcriptional regulator [Bacillus selenitireducens MLS10] gi|297141431|gb|ADH98188.1| two component transcriptional regulator, winged helix family [Bacillus selenitireducens MLS10] Length = 228 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 47/223 (21%), Positives = 94/223 (42%), Gaps = 7/223 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++I+D A + + +G + + E + D+ ++ L L+ Sbjct: 4 LIIEDDANIAELVSLYMEKEGWRVTIASDGEEGLSCYYDSEPDLLIVDIML--PEVNGLD 61 Query: 63 LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R +R + VP++ ++ + D+G DD + KP +E+LARV ++ RR Sbjct: 62 ICRDVRQDDRLVPILILTGKGETDDIVRGLDAGADDYLVKPFEPKELLARVKSLLRRSFP 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPL---PRRERRILEYLMANRGKRVAKTQIFSAIY 178 S + L RE R+L L+ +G+ +++ QI ++ Sbjct: 122 YAGSTTFFTAGNTSLSPEQHEWRINGELIAAAPREIRVLSLLVHCKGQTLSREQILDPVW 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 G D + V+ H+ ++R+KLR + + R +GY I+ Sbjct: 182 GK-DFDGDPRTVDVHMKRIREKLRTFESDWSLVTVRGVGYRIE 223 >gi|111021712|ref|YP_704684.1| response regulator, two-component system [Rhodococcus jostii RHA1] gi|110821242|gb|ABG96526.1| response regulator, two-component system [Rhodococcus jostii RHA1] Length = 235 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 48/224 (21%), Positives = 96/224 (42%), Gaps = 10/224 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + G + ++ + R D ++ G Sbjct: 11 LVVDDEPNILELLSVSLRFQGFEVATASTGAEGLDTARTFRPDAVILDVM--MPGMDGFG 68 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRR--- 118 L + +RA P++ ++ +++ + G DD V KP E++ R+ I RR Sbjct: 69 LLKRLRADGVDAPVLFLTAKDAVEDKISGLTLGADDYVTKPFSLEEVVTRLRVILRRAGK 128 Query: 119 --LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 ++ + R + I + D R+ G++ L E +L Y M N G ++K +I Sbjct: 129 VSVEEQSARIKFADIELDDDTREVWKAGDLVSLSPTEFTLLRYFMVNAGTVLSKPRILDH 188 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +D E VVES++S LR+K+ + + + R +GY + Sbjct: 189 VW-NYDFGGEVGVVESYVSYLRRKV-DTGETPLIHTLRGVGYVM 230 >gi|23097812|ref|NP_691278.1| two-component response regulator [Oceanobacillus iheyensis HTE831] gi|22776036|dbj|BAC12313.1| two-component response regulator [Oceanobacillus iheyensis HTE831] Length = 256 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 44/227 (19%), Positives = 99/227 (43%), Gaps = 8/227 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + G +G + + ++ + ++ +D+S L Sbjct: 22 ILIVEDDKTIATGLEYSLKQEGYDVVVCHKVQEAQRKINNDLDDISLCLFDLSLPDGSGY 81 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL +++ + +P+I ++ + D G DD + KP RE+++R+ + RR + Sbjct: 82 ELCEMVKRKADIPVIFLTVVDDEVNVVMGLDMGADDYITKPFRIRELISRIKTVLRRYEK 141 Query: 122 SNNRAET-------GPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 S E G I + + + E L E R+L + +RG+ +++ Q+ Sbjct: 142 SKPNKEQLSSVISIGSINIHTLEGKVYKETEEILLTALEYRLLMIFVNHRGQVLSRKQLL 201 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 I+ + + V +N + +I +LRKK+ +++ R +GY + Sbjct: 202 QLIWDIAGDFVNDNTLTVYIKRLRKKIEEDAQHPTVIETVRGMGYRM 248 >gi|107102351|ref|ZP_01366269.1| hypothetical protein PaerPA_01003413 [Pseudomonas aeruginosa PACS2] Length = 228 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 42/224 (18%), Positives = 96/224 (42%), Gaps = 6/224 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G +++ + E L D+ ++ L G Sbjct: 5 LLIVEDEPRIGQYLRQGLAEAGFAVDLSDDGNEGEQLALGGDYDLLILDVML--PGRDGW 62 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118 ++ R +R P++ ++ +++ + + G DD + KP E+LARV Sbjct: 63 QILRSVRDAGMTVPVLFLTARDAVEDRVRGLEQGADDYLVKPFAFVELLARVRTLLRRGS 122 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++ + + + R + QG+ L +E +LE L+ G+ + K+ I S ++ Sbjct: 123 QQLQETTLQLADLELDLLRRRVQRQGKRIDLTAKEFALLELLLRRSGEVLPKSLIASQVW 182 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + + + NV+E I +LR K+ + + + R +GY ++ Sbjct: 183 DM-NFDSDTNVIEVAIRRLRAKVDDDYPQRLIHTVRGMGYVLEE 225 >gi|298242582|ref|ZP_06966389.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] gi|297555636|gb|EFH89500.1| two component transcriptional regulator, winged helix family [Ktedonobacter racemifer DSM 44963] Length = 224 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 45/221 (20%), Positives = 98/221 (44%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + +++ E ++ +S D+ ++ L G Sbjct: 3 ILIIEDDPRLGPSLKKGLEGSHHAVDLLADGEDAVFMATSIPYDLVILDILL--PGLSGF 60 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRL 119 E+ R +R +P++ ++ ++ + D G DD + KP E+ ARV A+ R Sbjct: 61 EVCRQLREQGKTMPILLLTALGEVEHRVKGLDLGADDYLTKPFAFSELEARVRALLRRGG 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 VS+ + I + + + + + PL +E +LE+ M + + ++++ I ++ Sbjct: 121 PVSSATLQFMDITLDTRTHEVKRAERLIPLGNKEYALLEFFMRHPHQVLSRSMIVEHVWD 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D NV++ +I LR+KL N+ + + + R GY + Sbjct: 181 -GDTEHLSNVIDVYIRYLRRKLCNENEPNVIQTIRGSGYQL 220 >gi|270155525|gb|ACZ62810.1| hypothetical protein [Alcanivorax dieselolei] Length = 237 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 45/224 (20%), Positives = 89/224 (39%), Gaps = 7/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD ++ +G + + L +++ + ++ L Sbjct: 13 ILIIDDEVQIRRFLRISLQTEGYQVNEAATGGDGLALAETSQPALIVLDLGL--PDLDGQ 70 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ IRA S VP+I +S + D G +D V KP +E LARV + Sbjct: 71 DVLGRIRAFSNVPVIILSVRDDEGEKVRALDLGANDYVTKPFGVQEFLARVRRHLGHVND 130 Query: 122 ---SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 N + G +R E+ GE L +E +L L+ N + + + Q+ ++ Sbjct: 131 AGVVRNEYDDGHLRFDLARHQVELAGEPVKLTPKEFNVLGILIRNADRVITQQQLLRQVW 190 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 G + + + + I +LR KL + + ++ +GY + Sbjct: 191 GESHQH-DSHYLRILIGRLRHKLGDDPVAPTYLHTEPGVGYRFE 233 >gi|229173377|ref|ZP_04300921.1| Two-component response regulator vanRB [Bacillus cereus MM3] gi|228610071|gb|EEK67349.1| Two-component response regulator vanRB [Bacillus cereus MM3] Length = 214 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 47/220 (21%), Positives = 89/220 (40%), Gaps = 9/220 (4%) Query: 5 IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64 I+D +++ ++ + + D+ ++ E+ Sbjct: 2 IEDDQEIQELIKQFLMTQQYTVVVASDGLEGMTQFNKQSFDLVLLDVM--MPNLNGFEVA 59 Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRLKVS 122 ++IR+ S +P+I ++ + + FD G+DD + KP ++ RV A K Sbjct: 60 KMIRSQSNIPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSYDKNV 119 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 NN +R+ D V L +E IL+ L N K + + I ++G +D Sbjct: 120 NNHLVFKEVRIDVDAYRVYVTDVEILLTTKEFEILQLLFQNERKVLTRENIVEKVWG-YD 178 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 E ++++HI LRKKL + + + +GY ID Sbjct: 179 YFGETRIIDTHIKNLRKKL----AIPYIKTIKGIGYKIDE 214 >gi|169333828|ref|ZP_02861021.1| hypothetical protein ANASTE_00214 [Anaerofustis stercorihominis DSM 17244] gi|169259393|gb|EDS73359.1| hypothetical protein ANASTE_00214 [Anaerofustis stercorihominis DSM 17244] Length = 232 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 46/226 (20%), Positives = 87/226 (38%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + +G +L + D+ ++ L + Sbjct: 4 ILLVEDELKIARFLQLELTHEGYNLTVATEGRDGLLKAMDDKYDLIILDLML--PNLSGI 61 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIH------HREILARVAA 114 E+ R +RA+ P+I ++ + + D G DD + KP + Sbjct: 62 EICRRLRANKITTPIIMLTAKSDVSDKVMGLDIGADDYMTKPFAIEELLARIRKILSRQV 121 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + K + G I + + + E L ++E +LEYLM N+ + + QI Sbjct: 122 VISETKEREAVIKAGKITLDKNTYTAHFEDEEISLTKKEFELLEYLMINKNIVLTREQIV 181 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 S ++G +D E NV + +I LR K+ K + + R +GY Sbjct: 182 SNVWG-YDYESETNVTDVYIRYLRSKIDQKYDTHYIRTVRGIGYQF 226 >gi|76788079|ref|YP_330584.1| DNA-binding response regulator [Streptococcus agalactiae A909] gi|77406151|ref|ZP_00783223.1| DNA-binding response regulator [Streptococcus agalactiae H36B] gi|77412206|ref|ZP_00788526.1| DNA-binding response regulator [Streptococcus agalactiae CJB111] gi|76563136|gb|ABA45720.1| DNA-binding response regulator [Streptococcus agalactiae A909] gi|77161747|gb|EAO72738.1| DNA-binding response regulator [Streptococcus agalactiae CJB111] gi|77175231|gb|EAO78028.1| DNA-binding response regulator [Streptococcus agalactiae H36B] Length = 228 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 43/224 (19%), Positives = 89/224 (39%), Gaps = 8/224 (3%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + DD ++D + DG ++ F + + + + D+ ++ G Sbjct: 4 IIYFADDEKNIRDLVVPFLEHDGFTVRAFETGDLLLEAYKNQKPDLVILDIM--MPGTNG 61 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L++ + IR + VP+I ++ S + F+ G DD KP ++ V A+++RL Sbjct: 62 LDVMKSIRQYDNVPIIMLTARDSDVDFITAFNLGTDDYFTKPFSPIKLSLHVKALFKRLD 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQ----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + +T + + E PL + E L L+ ++ + + Sbjct: 122 EKAIKNDTQYQFLDLTLDTEKRIALLSNEEMPLTKTEFDFLLVLIEKPETAFSRETLLNR 181 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I+G D +E V+ I +LRKK + + + G+ + Sbjct: 182 IWGFDD--IESRAVDDTIKRLRKKFKQYHSQVSIKTVWGYGFKL 223 >gi|322832102|ref|YP_004212129.1| two component heavy metal response transcriptional regulator, winged helix family [Rahnella sp. Y9602] gi|321167303|gb|ADW73002.1| two component heavy metal response transcriptional regulator, winged helix family [Rahnella sp. Y9602] Length = 224 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 43/222 (19%), Positives = 92/222 (41%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D D + G S++ + +L D ++ L G Sbjct: 3 ILVIEDDVSTGDYLKKGLTEAGYSVDLARNGADGLFLALEEGYDAVILDVML--PGLNGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120 ++ ++R S VP++ ++ +Q + + G DD + KP E++ R+ + R Sbjct: 61 QVMEVLRKKSDVPVLFLTARDEVQDRIHGLELGADDYLIKPFSFTELVLRIRTLLRRPAA 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + + R Q + L +E +L+ LM G+ +++T I S ++ + Sbjct: 121 REPDAYSVADLNLDVLRRRVTRQDQTIALTNKEFMLLQLLMRREGEVLSRTMIASQVWDM 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + + NVV+ I +LR K+ + + R +GY + Sbjct: 181 -NFDSDTNVVDVAIKRLRAKVDRSFEVKLIHTVRGIGYVCEV 221 >gi|320353323|ref|YP_004194662.1| winged helix family two component transcriptional regulator [Desulfobulbus propionicus DSM 2032] gi|320121825|gb|ADW17371.1| two component transcriptional regulator, winged helix family [Desulfobulbus propionicus DSM 2032] Length = 226 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 46/220 (20%), Positives = 99/220 (45%), Gaps = 6/220 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD +++ +++ + D+ ++ L K Sbjct: 4 LIVDDEPELREQIALSLRQQQYTVDTAGDGALALEKVFADPFDLIVLDLMLPEK--DGFT 61 Query: 63 LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120 + R +RA + P++ ++ + + + D G DD ++KP E+LAR+ A + R + Sbjct: 62 VLRELRAEGVKTPVLMLTAKGEVDSRVKGLDLGADDYLHKPFSMAELLARIRALLRRSHE 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + G IR+ ++ R + + L +E +LE+L NR + +++ + ++G Sbjct: 122 QISPVLTIGNIRLDTNTRIVTLDNQPVSLTPKEFSLLEFLFYNRNRAISRFTMAEHVWGD 181 Query: 181 -FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 FD N ++ HI +RKKL ++ G + + R +GY Sbjct: 182 AFDPFTMSNNIDVHIKNVRKKLNDQGG-RIIVTVRGVGYM 220 >gi|297623818|ref|YP_003705252.1| winged helix family two component transcriptional regulator [Truepera radiovictrix DSM 17093] gi|297164998|gb|ADI14709.1| two component transcriptional regulator, winged helix family [Truepera radiovictrix DSM 17093] Length = 225 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 48/219 (21%), Positives = 86/219 (39%), Gaps = 5/219 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++I+D + + D+ ++ L LE Sbjct: 8 LIIEDEKEIAKFIDLELQAESYETVVTYDGVTGLSKFRELNPDLVVLDLML--PVLDGLE 65 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R +R S P+I ++ S+ + DSG DD + KP E+LARV A RR+ + Sbjct: 66 VARRVRKTSNTPIIILTAKDSVDDKVLGLDSGADDYLVKPFSIEELLARVRAHLRRVNPA 125 Query: 123 NNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + DGR+ G L +E +LE + GK + +I ++ Sbjct: 126 VTGEVRVADLVMNLDGREVFRDGRRIELSAKEFELLELFARSPGKVFNRFEIEEKVW--P 183 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + NVV+ ++ LR+KL + + + R +GY + Sbjct: 184 EYTGGSNVVDVYVGYLRRKLEHDGERRLIHTVRGVGYVL 222 >gi|294634562|ref|ZP_06713097.1| putative transcriptional regulator [Edwardsiella tarda ATCC 23685] gi|291092076|gb|EFE24637.1| putative transcriptional regulator [Edwardsiella tarda ATCC 23685] Length = 285 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 54/220 (24%), Positives = 96/220 (43%), Gaps = 9/220 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +LI+D L+ DG A G +L+ F+ +A D ++ L G LE Sbjct: 70 LLIEDDRLIGDGIKAGLSKMGFTLDWFSDGNQGLAALDAAPYDAVILDLSL--PGIDGLE 127 Query: 63 LPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120 + R R P++ ++ +L+ + G DD + KP E+ AR+ A I R Sbjct: 128 ILRRWREAGHAEPVLILTARDALEQRVTGLQQGADDYLCKPFALIEVAARLQALIRRNHG 187 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + G + + + G L +E +LE L+ N G+ + ++ I +Y Sbjct: 188 QTQTQLSHGAVTLDPLSLTATLDGAPLLLKPKEFALLELLLRNAGRVLPRSLIEEKLY-N 246 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ V N VE HI LR+KL + + + +GY++ Sbjct: 247 WEGDVSSNAVEVHIHHLRRKLGSA----FIRTVHGVGYTL 282 >gi|218529080|ref|YP_002419896.1| transcriptional regulator [Methylobacterium chloromethanicum CM4] gi|240141918|ref|YP_002966426.1| DNA-binding response regulator in two-component regulatory system [Methylobacterium extorquens AM1] gi|218521383|gb|ACK81968.1| two component transcriptional regulator, winged helix family [Methylobacterium chloromethanicum CM4] gi|240011860|gb|ACS43085.1| DNA-binding response regulator in two-component regulatory system [Methylobacterium extorquens AM1] Length = 244 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 50/228 (21%), Positives = 90/228 (39%), Gaps = 13/228 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L++D ++ + + G + G S LQ D+ ++ L G + Sbjct: 13 LLVEDDDGIRALVTRILRESGYRVTGCRSGADMWSLQPDLAVDLVLLDVML--PGVSGFD 70 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L R +RA VP+I +S + + G DD V KP E+LAR+ A+ RR ++ Sbjct: 71 LLRALRAKGTVPVIMLSARNEEADRVLGLELGADDYVAKPFGRPELLARIRAVLRRASIA 130 Query: 123 NNRAETGPIRVFSDGRDP---------EVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 A + + +G L E +L + + G+ + + QI Sbjct: 131 PLPAAAARPEALAFAGWRLDLRSRALVDPEGAAVDLSGAEHDLLLVFLEHPGRVLGREQI 190 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSI 220 G A + V++ +S+LR+KL + + R GY + Sbjct: 191 LEMCRGRL-AAPSDRSVDTLVSRLRRKLEPPEGAAPVIKTVRGSGYML 237 >gi|70732373|ref|YP_262129.1| DNA-binding heavy metal response regulator [Pseudomonas fluorescens Pf-5] gi|68346672|gb|AAY94278.1| DNA-binding heavy metal response regulator [Pseudomonas fluorescens Pf-5] Length = 225 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 45/220 (20%), Positives = 87/220 (39%), Gaps = 4/220 (1%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++I+D D + G +++ + V ++ L G Sbjct: 4 LIIEDEEKTADYLHRGLTEQGYTVDLARDGVEGLHMALEGDYAVIVLDVML--PGLDGFG 61 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLKV 121 + R +RA Q P+I ++ ++ + G DD + KP E++AR+ A R Sbjct: 62 VLRALRARKQTPVIMLTARERVEDRIKGLRDGADDYLGKPFSFLELVARLQALTRRSGGH 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + + R G L +E +L L +G+ ++KT I ++ + Sbjct: 122 EPVQISIADLWIDLISRKASRAGSRLDLTAKEFSLLSVLARRQGEILSKTAIAEMVWDI- 180 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + NVVE I +LR KL + + R +GY ++ Sbjct: 181 NFDSDANVVEVAIKRLRAKLDGPFEQKLLHTIRGMGYVLE 220 >gi|154247105|ref|YP_001418063.1| two component transcriptional regulator [Xanthobacter autotrophicus Py2] gi|154161190|gb|ABS68406.1| two component transcriptional regulator, winged helix family [Xanthobacter autotrophicus Py2] Length = 223 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 54/221 (24%), Positives = 101/221 (45%), Gaps = 9/221 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + D G +++ E ++L + D ++ L + Sbjct: 3 LLVVEDDPELNRQLVEALSDAGYAVDRAYDGEEGQYLGETEPYDAIVLDIGL--PKLDGI 60 Query: 62 ELPR-IIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + RA P++ ++ + FD+G DD V KP H E+LAR+ A+ RR Sbjct: 61 SVLESWRRAGKVTPVLILTARDRWSDKVQGFDAGADDYVAKPFHMEEVLARLRALLRRAS 120 Query: 121 -VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 +++ GP+R+ + V+G L E R+L YLM + G+ V++ ++ +Y Sbjct: 121 GHASSEMTCGPVRLDTRSGRVTVEGTAVKLTSHEYRLLSYLMHHAGRVVSRGELVEHLYD 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D + N +E + +LRKKL D + + R LGY + Sbjct: 181 Q-DFDRDSNTIEVFVGRLRKKLDC----DVIQTVRGLGYLL 216 >gi|317493615|ref|ZP_07952036.1| response regulator receiver domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918558|gb|EFV39896.1| response regulator receiver domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 220 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 47/222 (21%), Positives = 98/222 (44%), Gaps = 9/222 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D L++ G G++ + + ++ + LQ + + ++ L Sbjct: 3 ILIVEDDELIQQGLAKALGNESYACDCASTAAQAKSLQQVGQYSLIILDLGL--PDLDGA 60 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L R R VP++ ++ +++ ++ D+G DD + KP E+ ARV A+ RR + Sbjct: 61 SLLRQWRRSGVDVPVLVLTARDAIEDRVEGLDAGADDYLVKPFALVELQARVRALIRRFQ 120 Query: 121 VSNNRAETGPIRVFS-DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++ + + + G L +E +L LM G+ V + + +Y Sbjct: 121 GHSDNLLQVENIILNLSTQQVLFDGSQIELTPKEFALLSRLMMRAGQTVNREILQQDLYS 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D + N +E HI LR+KL G + + + R +GY ++ Sbjct: 181 WQD-DLSSNTLEVHIHNLRRKL----GKERIKTVRSVGYRLE 217 >gi|302524998|ref|ZP_07277340.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. AA4] gi|302433893|gb|EFL05709.1| phosphate regulon transcriptional regulatory protein PhoB [Streptomyces sp. AA4] Length = 264 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 46/222 (20%), Positives = 89/222 (40%), Gaps = 9/222 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + D + +G + D+ ++ L Sbjct: 40 LLVVDDEPHIADLVATVARYEGWQAVTAGCGADALARAAEFAPDIVVLDLML--PDFDGF 97 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + +R H VP++ ++ + + G DD + KP E++AR+ A+ RR Sbjct: 98 TVLDKLREKHDAVPVVFLTAKDATADRIAGLTRGGDDYLVKPFSVEELMARLRAVLRRTS 157 Query: 121 VSNNRA----ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + G + + + + G++ L E +L YLM + + K QI Sbjct: 158 EKPDARAVSLQVGDLTLDEETHEVRRGGQLAELTPTEYELLRYLMRHSPAVLTKAQILDH 217 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218 ++ +D NVVE IS+LR+KL + + + R +GY Sbjct: 218 VW-EYDFGGRSNVVELAISRLRRKLDAEAEP-LIHTVRGVGY 257 >gi|304309784|ref|YP_003809382.1| Two-component transcriptional regulatory protein [gamma proteobacterium HdN1] gi|301795517|emb|CBL43715.1| Two-component transcriptional regulatory protein [gamma proteobacterium HdN1] Length = 246 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 40/229 (17%), Positives = 95/229 (41%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++ + G +++ + S ++ ++ L GE L Sbjct: 14 ILVVDDDARLRSLLQRYLEEQGYAVKAVADAPQMDKALSRELYNLMVLDLML--PGEDGL 71 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL--------ARV 112 + R +R +++P+I ++ ++ D+G DD + KP + RE++ +V Sbjct: 72 SICRRLREATNRIPIIMLTAKGDDNDRINGLDAGADDYLPKPFNPRELMARIKAVLRRQV 131 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + S+ E GP + R GE L E +L+ L+ + + + + + Sbjct: 132 KELPGAPSQSDESVEFGPYALDLSTRALTKHGESVALTTGEFAVLKALVQHPREPLTRDK 191 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 + + G + + E ++ +S+LR+ + + + + +GY Sbjct: 192 LMNLARGR-EWSAMERSIDVQVSRLRRLIEDDPSNARYIQTVWGVGYVF 239 >gi|260888931|ref|ZP_05900194.1| transcriptional activator protein Irlr [Leptotrichia hofstadii F0254] gi|260861378|gb|EEX75878.1| transcriptional activator protein Irlr [Leptotrichia hofstadii F0254] Length = 227 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 48/221 (21%), Positives = 94/221 (42%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + + ++ E D ++ L Sbjct: 3 LLVVEDEKKLNELITKKLKKEYYGVDSCFDGEEAVRYVEGTEYDAIILDIML--PKLDGF 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ + IRA P++ ++ ++ + D G DD + KP E++AR+ + RR Sbjct: 61 EVIKRIRAKKNKVPILLLTARDNIDDKVKGLDYGADDYLVKPFIFEELMARIRVLLRRNS 120 Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + T +V D + + L RE ILEYL+ N+GK +++ +I I+ Sbjct: 121 GNADNVVTIANLKVDLDAKTVFRDDLLIKLSGREYSILEYLIRNKGKILSRERIEDHIW- 179 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D NV++ +I LRKK+ + + + R LGY + Sbjct: 180 NYDYEGGTNVIDVYIRYLRKKIDDSYTPKLIHTIRGLGYVL 220 >gi|121608267|ref|YP_996074.1| two component transcriptional regulator [Verminephrobacter eiseniae EF01-2] gi|121552907|gb|ABM57056.1| two component transcriptional regulator, winged helix family [Verminephrobacter eiseniae EF01-2] Length = 238 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 43/223 (19%), Positives = 93/223 (41%), Gaps = 10/223 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + + +G E + + +V ++ L G+ L Sbjct: 15 LIVEDEPAIAELIAINLRHNGFQPFWAEDGESAQRELDAVLPEVILLDWML--PGQSGLS 72 Query: 63 LPRIIRAHS---QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYR 117 L R RA S +P++ ++ + D+G DD + KP +E+ R R Sbjct: 73 LARKWRADSRTKPIPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIRAVLRRR 132 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + ++ G +R+ + QG+ + E ++L +LM + + +++Q+ + Sbjct: 133 APEQLSDSVHIGELRLDAATYRVTFQGQPLKVGPTEFKLLHFLMRHTERVHSRSQLLDKV 192 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G +EE V+ H+ +LR+ L V++ R GY + Sbjct: 193 WGDHVY-IEERTVDVHVKRLREALGAAS--VMVETVRGAGYRL 232 >gi|312960750|ref|ZP_07775255.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas fluorescens WH6] gi|311284408|gb|EFQ62984.1| response regulator receiver:transcriptional regulatory protein [Pseudomonas fluorescens WH6] Length = 229 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 47/227 (20%), Positives = 83/227 (36%), Gaps = 12/227 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A + A DG + + L S R D+ ++ L Sbjct: 6 ILIVEDDADSANILEAYLRRDGFEVALAEDGQRGLDLHKSWRPDLILLDVML--PRLSGT 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ +R S P+I ++ L G DD V KP RE++ARV A+ RR Sbjct: 64 EVLSAVRRSSDTPVIMVTAMGDEPEKLGALRYGADDYVVKPYSPREVVARVHAVLRRTTG 123 Query: 122 SNNRAETGPIRVFSDG--------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 S + + ++ L E ++L L+ K + ++ Sbjct: 124 SQPVEQLLRHENLQVDLIAFTAAIEHRDAPPQLLDLTPTEFKLLVTLLKTPSKAFTRDEL 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 L + VV++H+ LR+KL + + R +GY Sbjct: 184 LEIC--LPESEALARVVDTHVHNLRRKLETHGIAGVLVTVRSIGYRF 228 >gi|304440521|ref|ZP_07400408.1| DNA-binding response regulator [Peptoniphilus duerdenii ATCC BAA-1640] gi|304370999|gb|EFM24618.1| DNA-binding response regulator [Peptoniphilus duerdenii ATCC BAA-1640] Length = 248 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 38/220 (17%), Positives = 96/220 (43%), Gaps = 7/220 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D +++G + ++ + ++ + + L Sbjct: 34 ILVVEDDRTIREGISEYLSEFNYTVLEAKDGKEALQKFG---PSINLVILDIQIPFISGL 90 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IR S +P++ ++ + + +D F + D + KP + AR+ ++ ++ Sbjct: 91 EVLKEIRKTSSLPVLMLTAFNDEEYKIDAFTNLADGYMEKPFSLPVLKARIDSLIKKSYK 150 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 E V +V G+ + +E IL L+ N G+ + ++QI +++ Sbjct: 151 DVELFEYKDTEVNFTSYTAKVDGKSIDVNAKELEILRCLLDNEGRALTRSQIIDSVWKET 210 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +E + V++ ++ +LRKKL+ D + + R +GY ++ Sbjct: 211 EEIPFDRVIDVYVKELRKKLKL----DCIVTIRNVGYKLE 246 >gi|293376778|ref|ZP_06623000.1| response regulator receiver domain protein [Turicibacter sanguinis PC909] gi|292644644|gb|EFF62732.1| response regulator receiver domain protein [Turicibacter sanguinis PC909] Length = 224 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 50/220 (22%), Positives = 93/220 (42%), Gaps = 6/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ +D + L +G ++ E + S D+ ++ Sbjct: 4 ILVAEDDKHARKLLETLLKREGYTVFTAEDGEKVLEILSIQHIDLIILDIM--MPKMDGF 61 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R++R + +P++ + + F G DD + KPI E+L R+ A+ RR + Sbjct: 62 EVARLLREANFTMPILMATAKHLPEDKKKGFIVGTDDYMTKPIDTEEMLLRIRALLRRSQ 121 Query: 121 VSNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + N R T D + E+ LP++E +L L++ G+ + Q+ I+G Sbjct: 122 IVNERKLTIGKVRLDYDALTVTRENEIQTLPQKEFYLLYKLLSYPGRIFTRIQLMDEIWG 181 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 + E + V HI++LR K N F+ + R LGY Sbjct: 182 MESETTDT-TVNVHINRLRNKFSNYPEFELIC-VRGLGYK 219 >gi|258645454|ref|ZP_05732923.1| DNA-binding response regulator ResD [Dialister invisus DSM 15470] gi|260402805|gb|EEW96352.1| DNA-binding response regulator ResD [Dialister invisus DSM 15470] Length = 234 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 45/233 (19%), Positives = 84/233 (36%), Gaps = 15/233 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + D G + + E + S + D ++ L GE Sbjct: 5 LIVEDEPAISDMERDFLEGAGYNPFIAENSEEALHMMRSEKIDAVILDVTL--PGEDGFS 62 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKP----------IHHREILARV 112 L R +R + VP++ + + G DD + KP + R+ Sbjct: 63 LCRKLREITNVPILFATARTEDSDIVRGLGLGADDYLLKPLKGTILIAHLRAQLSVHMRI 122 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 A + G + + R + + L +E +L +L + + +K Q Sbjct: 123 KAEQLNKSMPEEGITIGDLIIRPKARQVILNDKNVLLTGKEFDLLYFLATHPNEVFSKEQ 182 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDP--VDSKRFLGYSIDWN 223 +F I+ L D E V HI++LR KL+ G +++ GY N Sbjct: 183 LFEQIWSL-DPIGEPATVTVHINRLRSKLKKVSGRAYERIETVWGSGYRFHGN 234 >gi|262204089|ref|YP_003275297.1| response regulator receiver [Gordonia bronchialis DSM 43247] gi|262087436|gb|ACY23404.1| response regulator receiver [Gordonia bronchialis DSM 43247] Length = 220 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 41/223 (18%), Positives = 87/223 (39%), Gaps = 11/223 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ +D + G ++E E + S D+ ++ L Sbjct: 4 ILIAEDDVQIASFVGKGLRAAGYTVEHVADGETALLMGRSPEIDMILLDIGLPA--MDGF 61 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYR 117 + + +R P++ ++ S+ T+ + G +D + KP E + Sbjct: 62 SVLQQLRGEGVSTPVVVLTARDSVTDTVAGLEGGANDYMTKPFQFAELLARVRLRLHHDA 121 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 S TG +R+ R +V + L RE +LE + + + +++ QI + Sbjct: 122 PAAGSETSLATGDLRLDLRSRRVQVGSDTIDLTAREFALLEVFLRHPDQVLSREQILGHV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +G +D NVV+ ++ LR K+ G +++ R +GY + Sbjct: 182 WG-YDFDPASNVVDVYVRALRTKI----GAQRLETVRGMGYRL 219 >gi|31791784|ref|NP_854277.1| putative two component DNA binding transcriptional regulatory protein TCRA [Mycobacterium bovis AF2122/97] gi|121636520|ref|YP_976743.1| putative two component DNA binding transcriptional regulatory protein tcrA [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224988992|ref|YP_002643679.1| putative two component DNA binding transcriptional regulatory protein [Mycobacterium bovis BCG str. Tokyo 172] gi|31617371|emb|CAD93480.1| PUTATIVE TWO COMPONENT DNA BINDING TRANSCRIPTIONAL REGULATORY PROTEIN TCRA [Mycobacterium bovis AF2122/97] gi|121492167|emb|CAL70633.1| Putative two component DNA binding Transcriptional regulatory protein tcrA [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224772105|dbj|BAH24911.1| putative two component DNA binding transcriptional regulatory protein [Mycobacterium bovis BCG str. Tokyo 172] Length = 253 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 39/221 (17%), Positives = 80/221 (36%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + ++G +++ D ++ L G Sbjct: 25 ILVIEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVML--PGIDGF 82 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ +R P++ ++ ++ + D G DD + KP + E+ AR+ A+ RR Sbjct: 83 EVCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRALSRRGP 142 Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + R+ L +E +LE L+ G + Q+ + Sbjct: 143 IPRPPTLEAGDLRLDPSEHRVWRADTEIRLSHKEFTLLEALIRRPGIVHTRAQLLERCWD 202 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 N+V+ +I LR K+ G +++ R GY + Sbjct: 203 AA-YEARSNIVDVYIRYLRDKIDRPFGVTSLETIRGAGYRL 242 >gi|28896928|ref|NP_796533.1| osmolarity response regulator [Vibrio parahaemolyticus RIMD 2210633] gi|153837894|ref|ZP_01990561.1| osmolarity response regulator [Vibrio parahaemolyticus AQ3810] gi|260365885|ref|ZP_05778379.1| DNA-binding response regulator [Vibrio parahaemolyticus K5030] gi|260877828|ref|ZP_05890183.1| DNA-binding response regulator [Vibrio parahaemolyticus AN-5034] gi|260895523|ref|ZP_05904019.1| DNA-binding response regulator [Vibrio parahaemolyticus Peru-466] gi|260902547|ref|ZP_05910942.1| DNA-binding response regulator [Vibrio parahaemolyticus AQ4037] gi|28805136|dbj|BAC58417.1| transcriptional regulator OmpR [Vibrio parahaemolyticus RIMD 2210633] gi|149748757|gb|EDM59602.1| osmolarity response regulator [Vibrio parahaemolyticus AQ3810] gi|308088470|gb|EFO38165.1| DNA-binding response regulator [Vibrio parahaemolyticus Peru-466] gi|308090000|gb|EFO39695.1| DNA-binding response regulator [Vibrio parahaemolyticus AN-5034] gi|308109666|gb|EFO47206.1| DNA-binding response regulator [Vibrio parahaemolyticus AQ4037] gi|308113446|gb|EFO50986.1| DNA-binding response regulator [Vibrio parahaemolyticus K5030] gi|328471703|gb|EGF42580.1| osmolarity response regulator [Vibrio parahaemolyticus 10329] Length = 239 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 41/229 (17%), Positives = 91/229 (39%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++ + G + + E + L + + ++ L GE L Sbjct: 7 ILVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLML--PGEDGL 64 Query: 62 ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112 + R + A++ +P++ ++ + + G DD + KP + RE + + Sbjct: 65 SICRRLRHANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQT 124 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + E G R+ R+ E PL E +L+ L+ N + +++ + Sbjct: 125 VELPGAPSTEEKVVEFGEFRLNLGTREMFRGDEAMPLTSGEFAVLKSLVTNAREPMSRDK 184 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 + + G + + E ++ IS+LR+ L + + + LGY Sbjct: 185 LMNMARGR-EYSAMERSIDVQISRLRRMLEDDPSKPRYIQTVWGLGYVF 232 >gi|330809326|ref|YP_004353788.1| two-component regulator system response regulator PmrA [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327377434|gb|AEA68784.1| Putative two-component regulator system response regulator PmrA [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 220 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 49/223 (21%), Positives = 98/223 (43%), Gaps = 9/223 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D + +G +G +++ S D++ ++ L L Sbjct: 3 LLLIEDDVALGEGIHQALSREGYTVDWVQDGSSALHSLLSETFDLAVLDLGL--PRMDGL 60 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ R +R + S +P++ ++ + + + D+G DD + KP E+ AR+ A+ RR Sbjct: 61 QVLRRLRDSGSNLPVLILTARDATEDRIAGLDAGADDYLVKPFDLAELKARLRALLRRSA 120 Query: 121 VSNNRAETGPIRVFSD-GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + QG+ L +E ++L L++ G+ + + + +YG Sbjct: 121 GRAQALIEHAGISLNPGTQQVSYQGKPVALTPKEYQLLHELLSPPGRVMTRDHLMQLLYG 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +EA E N +E HI LRKK D + + R +GY ++ Sbjct: 181 WSEEA-ESNTLEVHIHHLRKK----FSTDLIRTIRGVGYLVEE 218 >gi|323483412|ref|ZP_08088800.1| hypothetical protein HMPREF9474_00549 [Clostridium symbiosum WAL-14163] gi|323691088|ref|ZP_08105369.1| regulatory protein VanR [Clostridium symbiosum WAL-14673] gi|323403266|gb|EGA95576.1| hypothetical protein HMPREF9474_00549 [Clostridium symbiosum WAL-14163] gi|323504857|gb|EGB20638.1| regulatory protein VanR [Clostridium symbiosum WAL-14673] Length = 246 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 44/237 (18%), Positives = 85/237 (35%), Gaps = 20/237 (8%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D +++G G + + ++ ++ + Sbjct: 12 ILLVEDDKEIREGIEIFLRGQGYRVFQAADGVEGLEILEREEIHLAIVDIM--MPRMDGV 69 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + +R H P+I +S + + G DD + KP E+LARV + RR Sbjct: 70 TMVIRLREHYDFPVIFLSAKSEEVDKIMGLNMGADDYITKPFTPMELLARVNSHLRRYNR 129 Query: 122 SN---------------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGK 166 N G + + D + V GE L E +IL LM N G Sbjct: 130 FMALLNRKEEKDGGENSNIYRIGGLELNEDTVELMVDGEPAKLTPMEFKILSLLMKNPGH 189 Query: 167 RVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 + I+ ++ + A+ + V H+ +R+K+ + + +GY I+ Sbjct: 190 VFSADDIYERVWN--ERAINTDTVMVHVRNIREKIELDPKKPKYLKVVWGVGYKIEK 244 >gi|168205030|ref|ZP_02631035.1| DNA-binding response regulator [Clostridium perfringens E str. JGS1987] gi|168212345|ref|ZP_02637970.1| DNA-binding response regulator [Clostridium perfringens CPE str. F4969] gi|170663408|gb|EDT16091.1| DNA-binding response regulator [Clostridium perfringens E str. JGS1987] gi|170716198|gb|EDT28380.1| DNA-binding response regulator [Clostridium perfringens CPE str. F4969] Length = 226 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 40/223 (17%), Positives = 86/223 (38%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G + ++ + D+ ++ L L Sbjct: 4 ILIVEDEEKIARFIELELIHEGYKVIKADNGRTGLEIAERGEADLIILDVML--PEINGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117 E+ R IR S+VP+I ++ ++ + D+G DD + KP I + Sbjct: 62 EVLRRIRRVSEVPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKKRVF 121 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 +K + G + + L RE +L+ LM N+ + + + + Sbjct: 122 TVKKDEDVIRCGLLTLDKMRHKVMYGDTEIELTNREFTLLQILMENKNIVLTRDVLIEKV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G ++ E NV++ ++ LR K+ + + + R +GY I Sbjct: 182 CG-YNYVGETNVIDVYVRYLRTKIDDVFKVKIISTVRGVGYVI 223 >gi|115360529|ref|YP_777666.1| two component transcriptional regulator [Burkholderia ambifaria AMMD] gi|115285857|gb|ABI91332.1| two component transcriptional regulator, winged helix family [Burkholderia ambifaria AMMD] Length = 239 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 49/228 (21%), Positives = 89/228 (39%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A + D D+ + L D ++ L G L Sbjct: 7 ILIVEDDADIADVLSLHLRDERYEVVHSADGTEGLRLLEQGNWDALILDLML--PGVDGL 64 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R RA P+I S S + + G DD + KP E++ARV A+ RR+ Sbjct: 65 EICRRARAMARYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVD 124 Query: 121 VSNNRAETGPIR-------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + R+ V G L RE +L + + GK ++ + Sbjct: 125 ALARDSRIDAGTLDVAGLSIDPIAREASVDGTRIDLTPREFDLLYFFARHPGKVFSRMDL 184 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 +A++G + E+ V +HI++LR K+ + + + GY + Sbjct: 185 LNAVWG-YQHEGYEHTVNTHINRLRAKVEADPAEPVRILTVWGRGYKL 231 >gi|260361519|ref|ZP_05774566.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Vibrio parahaemolyticus K5030] gi|308112856|gb|EFO50396.1| alkaline phosphatase synthesis transcriptional regulatory protein PhoP [Vibrio parahaemolyticus K5030] Length = 229 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 42/226 (18%), Positives = 91/226 (40%), Gaps = 11/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LIDD + + +G + N E +S D+ I ++ + Sbjct: 4 ILLIDDDIELTSLLKEVLSFEGFEVSEANDGEAGLAAINS---DIDLILLDVMMPKLNGM 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI------LARVAAI 115 E + +R + + P++ ++ + + G DD + KP RE+ + R + Sbjct: 61 ETLKRLRENWETPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRRTSN 120 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 ++ +++ E +R++ ++ ++ L E +L + + N G + K + Sbjct: 121 TQKNGKNSDCIEYQELRLYPGKQEAYCDQQLLDLTATEFALLTHFVQNPGHVLTKETLSL 180 Query: 176 AIYGLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220 + G A + ++ H+S LRKKL G + + R GY + Sbjct: 181 DVLGKRLAAFD-RAIDMHVSNLRKKLPDQSNGKPRIKTLRGRGYML 225 >gi|255526947|ref|ZP_05393841.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296185076|ref|ZP_06853486.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] gi|255509347|gb|EET85693.1| two component transcriptional regulator, winged helix family [Clostridium carboxidivorans P7] gi|296049910|gb|EFG89334.1| response regulator receiver domain protein [Clostridium carboxidivorans P7] Length = 228 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 46/226 (20%), Positives = 95/226 (42%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + D +G ++ +S + + ++ ++ L E Sbjct: 5 IIVIEDEFSINDILTFALKGEGYKVKSASSSKEAREFLQDFKPNLVLLDINL--PDESGF 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL + I A+ ++P+I ++ + + + G DD + KP H +E+L RV RR+ Sbjct: 63 ELCKFINANYKIPIIMLTARNDITDKVLGLELGADDYITKPFHIKEVLVRVKIALRRVDK 122 Query: 122 SNNRAETGPIRVFSDG-------RDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 N +D R G+ L +E +L + + N+ + + +I Sbjct: 123 YRNLDNYNDFINLNDSIKIKLENRMVIKDGKEIKLKPKEYDLLVFFIKNKNRVFTREEIL 182 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G+ D E V+ H+ +LR KL G +++ +GY + Sbjct: 183 DKVWGI-DYCGEIRTVDIHVRRLRAKLNLDSGQSFIETVFGVGYVM 227 >gi|254432753|ref|ZP_05046456.1| two-component response regulator [Cyanobium sp. PCC 7001] gi|197627206|gb|EDY39765.1| two-component response regulator [Cyanobium sp. PCC 7001] Length = 240 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 36/229 (15%), Positives = 80/229 (34%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++DD ++ GD G + + + S R D+ ++ L G+ L Sbjct: 7 IWVVDDDPELRQMLQRYLGDQGYEVRCLANGQQLTARLESQRPDLVVLDLML--PGDDGL 64 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112 L R +R P++ ++ + + G DD + KP RE + R Sbjct: 65 CLLRRLRDGGDDLPVLMLTGKGDAVDRIIGLEQGADDYLAKPFLPRELTARIEAVLRRRG 124 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + + G + R E QG+ + E +L + + +++ + Sbjct: 125 SGPAGAPQAEASPIPFGAWVLHPSSRQLERQGQPVSITSGEFSLLLAFAQHPHRPLSRER 184 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 + G + ++ +S+LR+ + + + + GY Sbjct: 185 LIELSRGPT-SDTDARSMDVQVSRLRRLVEDDPSQPRHIQTVWGYGYVF 232 >gi|254386084|ref|ZP_05001398.1| two-component system regulator [Streptomyces sp. Mg1] gi|194344943|gb|EDX25909.1| two-component system regulator [Streptomyces sp. Mg1] Length = 240 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 53/236 (22%), Positives = 89/236 (37%), Gaps = 21/236 (8%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEE-WLQSSAREDVSAIEAFLIGKGEKV 60 +L++D V A+ G + + E L + + L + Sbjct: 3 LLLVEDDDHVAAALSAILARHGFRVTHARNGEEALQALLPADAPPFGVVLLDLGLPDQDG 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ IR + P+I ++ +++ + + G DD V KP E+LAR+ A+ RR Sbjct: 63 YEVCGKIRKRTSTPVIMVTARADVRSRIHGLNMGADDYVVKPYDTGELLARIHAVARRTG 122 Query: 121 VSNNRAETGPIRVFS----------------DGRDPEVQGEVFPLPRRERRILEYLMANR 164 S N A P + R V G PL R+E +L L Sbjct: 123 GSENTATATPGPAGTGGEPGVVRLGPVSIELPTRRVSVDGADVPLTRKEFDLLALLAQRP 182 Query: 165 GKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G + QI S ++ +E H++ LR KLR +++ R +GY + Sbjct: 183 GVVFRREQIISEVW-RTSWEGTGRTLEVHVASLRSKLR---MPALIETVRGVGYRL 234 >gi|187923506|ref|YP_001895148.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia phytofirmans PsJN] gi|187714700|gb|ACD15924.1| two component heavy metal response transcriptional regulator, winged helix family [Burkholderia phytofirmans PsJN] Length = 227 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 38/222 (17%), Positives = 91/222 (40%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + G ++ + + D+ ++ L G+ Sbjct: 3 ILIVEDEIKTGTYLRKGLTEAGFIVDWVEDGLTGQHRALTEDYDLIVLDVML--PGQDGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120 + + +R ++ ++ + + + G DD + KP E+LARV +I R Sbjct: 61 TVLKNLRRTHSTSVLLLTARDEVDDKVRGLNMGGDDYLVKPFDFAELLARVRSILRRGQT 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + + + R G++ L +E +L LM +G+ + ++ I S ++ + Sbjct: 121 RDAASLQVANLVLDLTRRKATRHGDMILLTAKEFALLWLLMRRQGEILPRSTIASQVWDM 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + + NVV++ I +LR K+ + + + R +GY ++ Sbjct: 181 -NFDSDTNVVDAAIRRLRAKVDDNYEPKLIHTVRGMGYVLEE 221 >gi|126659727|ref|ZP_01730855.1| Two component Transcriptional regulator, Winged helix family protein [Cyanothece sp. CCY0110] gi|126618975|gb|EAZ89716.1| Two component Transcriptional regulator, Winged helix family protein [Cyanothece sp. CCY0110] Length = 224 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 48/222 (21%), Positives = 95/222 (42%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + + A + +++ E + D+ ++ L + Sbjct: 3 ILLVEDDERIANVLAASLTEQRYTVDMAGDGEKGWEFIEAFSYDLILLDVML--PKLNGI 60 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L + IR +P++ ++ + + + D G DD V KP E+LAR+ A+ RR Sbjct: 61 GLCQRIRQSGCSIPVLMLTAKDTSEDKVTGLDVGADDYVVKPFDVPELLARIRALLRRGN 120 Query: 121 VSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 V+ N E +R+ + ++ L +E +LE + N ++++ I ++ Sbjct: 121 VAPNPILEWQQLRLDPSSYEVTYSDQILHLTPKEYGLLELFLRNENLVLSRSAILDNLWS 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 D E V+ HI LRKKLR D +++ +GY + Sbjct: 181 FED-PPSEEAVKVHIKDLRKKLRKVGAPPDFIETVYGVGYRL 221 >gi|313622522|gb|EFR92939.1| regulatory protein VanR [Listeria innocua FSL J1-023] Length = 231 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 48/229 (20%), Positives = 87/229 (37%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD + D ++G ++ L + + ++ L Sbjct: 5 ILIADDDKEIVDLVKLYLQNEGYTIYQAYDGAEVWRLVQEKQPTLVILDIM--MPKMNGL 62 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-------REILARVA 113 E+ R++R + P++ +S + +G DD + KP + + IL R+ Sbjct: 63 EVCRLMRNNGILTPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAILRRMQ 122 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + VS ++ GPI V V + L E IL L + G+ + I Sbjct: 123 QMSQAEPVSQDKVIIGPIVVDRGLHVVTVGEKELHLTTSEFDILFLLASEPGRVFSSEYI 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221 F I+ V HIS LR KLR+ G + + + +GY I+ Sbjct: 183 FEKIWQEKAL-GASKTVMVHISNLRDKLRDAMGGENVIKTIWGVGYKIE 230 >gi|312126506|ref|YP_003991380.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor hydrothermalis 108] gi|311776525|gb|ADQ06011.1| two component transcriptional regulator, winged helix family [Caldicellulosiruptor hydrothermalis 108] Length = 221 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 46/221 (20%), Positives = 97/221 (43%), Gaps = 10/221 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D+ + ++G ++ NS ++ L+ D+ ++ L + Sbjct: 4 ILVVEDQQDLNQIITRFLKNEGFNVI--NSYTAKDALEKLNDTDLVILDIML--PDMEGY 59 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + + +P I ++ L F+ G +D + KP E++ARV + RR + Sbjct: 60 EVLKE-ASKKGIPTIILTSKSEEFDKLKGFELGAEDYITKPFSMLELIARVKVVLRRNRN 118 Query: 122 SNNRAE--TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + G + +F V GE L +E +L +L N+ ++ +I ++G Sbjct: 119 FEESIKLLGGKVEIFPQRFKVIVDGEDVNLTHKEFELLLFLAKNKDLVKSRDEILEKVWG 178 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 FD E V+ HI +LR+KL++ + + +GY + Sbjct: 179 -FDFIGETRTVDVHIKQLREKLKDY--KFLIKTVWGVGYKL 216 >gi|227877262|ref|ZP_03995335.1| response regulator [Lactobacillus crispatus JV-V01] gi|227863118|gb|EEJ70564.1| response regulator [Lactobacillus crispatus JV-V01] Length = 234 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 45/230 (19%), Positives = 88/230 (38%), Gaps = 15/230 (6%) Query: 5 IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64 ++D V + F +G + + + I L + +++ Sbjct: 2 VEDDTSVAEMMGMFFKKEGWQQDIAVDGVEAVDMFKKNADKYDLITLDLNLPKKDGIQVA 61 Query: 65 RIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVSN 123 + +RA S P+I ++ S + G D+ V KP ++AR+ A++RR+ + Sbjct: 62 KEVRAISPTVPIIMLTARGSESDQVLGLGIGADEYVTKPFSPIALIARIKALHRRVMMEE 121 Query: 124 NRAETGPIRVFS------------DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 A T V L +E +L + + ++ Sbjct: 122 EPAHTQEDNQDYEITTDHLKISKNRREVLFDNQPVMGLTPKEFDLLYTMAQKPKQVFSRD 181 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 Q+ ++G ++ EE V++HI KLR+KL K+G + + +GY D Sbjct: 182 QLLELVWG-YEYYGEERTVDAHIKKLRQKLE-KVGAKVIQTVWGVGYKFD 229 >gi|187777886|ref|ZP_02994359.1| hypothetical protein CLOSPO_01478 [Clostridium sporogenes ATCC 15579] gi|187774814|gb|EDU38616.1| hypothetical protein CLOSPO_01478 [Clostridium sporogenes ATCC 15579] Length = 230 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 50/226 (22%), Positives = 86/226 (38%), Gaps = 9/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + + S D+ ++ L G Sbjct: 7 ILVVEDNNDINKLLCDMLRQSEYITKSAYSGTEALIYLKEYDWDMVLLDLML--PGMDGK 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL IR +P+I IS ++ G DD + KP E+ AR+ + RR K Sbjct: 65 ELLSNIRKSKPMPVIIISAKEEKDIKIETLRMGADDYITKPFDIDEVSARIDSHLRRYKE 124 Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 +N A + D R+ V + L RE IL+ LM K K +F + Sbjct: 125 FSNIAPQNLLEYKEISLNKDTREVFVYDKQIMLTSREFDILQLLMGYPKKVFTKANLFES 184 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 ++ + ++N + HIS LR KL + + + +GY +D Sbjct: 185 VWS-SEYLCDDNTINVHISNLRNKLSKAGTENEYIQTIWGIGYKLD 229 >gi|153939744|ref|YP_001390056.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|152935640|gb|ABS41138.1| DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|295318142|gb|ADF98519.1| DNA-binding response regulator [Clostridium botulinum F str. 230613] Length = 232 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 37/222 (16%), Positives = 83/222 (37%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++D + +G G ++ + E L + + D+ ++ L Sbjct: 4 IFFVEDDLSLINGLSFAIKKQGYEIDVARTSLEAEALWKNGKYDLVILDVSL--PDGSGY 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH---HREILARVAAIYRR 118 +L + IR S+VP++ ++ + D G DD + KP + + Sbjct: 62 DLCKKIRKTSKVPIMFLTAADEETDIIMGLDIGGDDYITKPFKLAVFMSRINALLRRSNN 121 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++ + + V + G+ L E ++L M N ++ QI S ++ Sbjct: 122 FNQADTELNSNGMNVQLLKGEVYKNGKQLDLTASEYKLLCMFMENPDIVLSPEQILSRLW 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYS 219 + ++ N + +I +LR K+ + + + R +GY Sbjct: 182 DCNENYIDNNTLTVYIRRLRTKIEDNPGEPQKIVTVRRMGYK 223 >gi|15894147|ref|NP_347496.1| two-component response regulator [Clostridium acetobutylicum ATCC 824] gi|15023754|gb|AAK78836.1|AE007601_7 Two-component response regulator [Clostridium acetobutylicum ATCC 824] gi|325508275|gb|ADZ19911.1| Two-component response regulator [Clostridium acetobutylicum EA 2018] Length = 231 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 49/226 (21%), Positives = 96/226 (42%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + + G ++ S + + ++ L G Sbjct: 7 IIVVEDDNDINNMLKIMLERKGYNVVQAYSGTEALLHVKTQEFQLMLLDLML--PGISGD 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL + +R S +P+I IS S T + G DD + KP ++ AR+ + RR Sbjct: 65 ELLQKVRGISAMPVIVISAKLSKDTKVRMLKIGADDYITKPFDMDDVDARIYSNLRRYIK 124 Query: 122 ------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 N++ + + S + V G+ L RE +ILE L+ N+ K +K +F Sbjct: 125 FGKDESFNSKIVFKDMILDSVAMEVIVNGQRMSLTNREFKILEVLLLNKRKVFSKANLFE 184 Query: 176 AIYGLFDEAVEENVVESHISKLRKK-LRNKLGFDPVDSKRFLGYSI 220 +++ ++N + HIS LR K L+ + +++ +GY + Sbjct: 185 SVW-EDTYMGDDNTLNVHISNLRNKLLKANSKEEYIETVWGMGYRL 229 >gi|332992917|gb|AEF02972.1| putative two component response regulator transcription regulator protein [Alteromonas sp. SN2] Length = 227 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 39/221 (17%), Positives = 93/221 (42%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + D + G +E + + ++ ++ L Sbjct: 3 ILVVEDEKKIGDYIKQGLTESGFVIELVRNGLDGHHKAMTGEFNLIILDVML--PDINGW 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119 + +R P++ ++ S+ + + G DD + KP E+LARV R Sbjct: 61 RILESLRQSGNQTPVLFLTARDSVNDRVKGLELGADDYLVKPFAFAELLARVRTLFRRGN 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 V+ N + +++ R + G+ L +E +LE ++ +G+ + ++ I S ++ Sbjct: 121 TVAANLLQVADLQMDIPSRVVKRAGQSINLTTKEFSLLELMVRRQGEVLPRSLIASQVWD 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + + NV++ I +LR K+ + + + R +GY + Sbjct: 181 I-NFDSDTNVIDVAIRRLRAKIDDAFSPKLIQTVRGMGYKL 220 >gi|317968088|ref|ZP_07969478.1| two-component system response regulator [Synechococcus sp. CB0205] Length = 256 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 43/228 (18%), Positives = 89/228 (39%), Gaps = 9/228 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +LI+D +++ G ++ + L D+ ++ L G + Sbjct: 5 ILLIEDDGDMRELVAGHLEHSGFDVQRAEDGIKGQALALQYTPDLVLLDLMLPKVDGLTL 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R S++P++ ++ S + + F+SG DD + KP E+L R+ A+ RR Sbjct: 65 CQRLRRDERTSRIPVLMLTALGSTKDKVSGFNSGADDYLAKPFDLEELLVRIKALLRRSD 124 Query: 121 VSNNRAETGPIRVFSD------GRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + I + + E L E +L L+ G+ VA + I Sbjct: 125 RAPLSTKHNEILNYGCLTLVPERFEAIWFDEPVRLTHLEFELLHCLLQRHGQTVAPSLIL 184 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 ++G ++ + + H+ LR KL + + + GY ++ Sbjct: 185 KEVWG-YEPDDDIETIRVHVRHLRTKLEPDPRKPRFIKTVYGAGYCLE 231 >gi|310828178|ref|YP_003960535.1| two component transcriptional regulator [Eubacterium limosum KIST612] gi|308739912|gb|ADO37572.1| two component transcriptional regulator [Eubacterium limosum KIST612] Length = 219 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 46/219 (21%), Positives = 89/219 (40%), Gaps = 6/219 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 + +DD + + + DG + + + D+ ++ G Sbjct: 4 ILAVDDEKGILNLVKRVLEKDGHQVRTLSDP-AALSMNGLEAFDLILLDVM--MPGTDGF 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R IR + P++ ++ + + G DD + KP + E+ ARVAA RR K Sbjct: 61 TLCRKIRENVDCPILFLTAKTMEKDIMYGLGIGGDDYITKPFGNGELRARVAAHLRREKR 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQ-GEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + F+ G + + L + E I E+L + G+ +K QI+ A+YG Sbjct: 121 EKRSVLSLDGIRFNLGAHEMIIGEQKVSLTKSEYAICEFLARSHGQVFSKEQIYEAVYG- 179 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 ++ + + + H+ +R KL P+++ +GY Sbjct: 180 YEGEGDSSAIAEHVKNIRAKLSVYGCA-PIETVWGIGYK 217 >gi|257486326|ref|ZP_05640367.1| KDP operon transcriptional regulatory protein kdpE [Pseudomonas syringae pv. tabaci ATCC 11528] gi|320324926|gb|EFW80998.1| KDP operon transcriptional regulatory protein kdpE [Pseudomonas syringae pv. glycinea str. B076] gi|320329081|gb|EFW85079.1| KDP operon transcriptional regulatory protein kdpE [Pseudomonas syringae pv. glycinea str. race 4] gi|331010614|gb|EGH90670.1| KDP operon transcriptional regulatory protein kdpE [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 230 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 42/223 (18%), Positives = 87/223 (39%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++IDD ++ G + + + + D+ ++ L Sbjct: 7 ILVIDDEPQIRKFLRISLVSQGYKVLEAATGGDGLTQAALNKPDLLVLDLGL--PDMDGQ 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYRR 118 ++ R S VP++ +S S + D+G +D V KP +E LAR+ Sbjct: 65 QVLSEFREWSAVPVLVLSVRASEAQKVQALDAGANDYVTKPFGIQEFLARIRALLRQVSG 124 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + GP+ V R + G+ L R+E +L L + G+ + + Q+ I+ Sbjct: 125 SDKPESALQFGPLTVDLAYRRVLLDGQEVALTRKEYAVLAQLARHPGRVITQQQLLKDIW 184 Query: 179 GLFDEAVEENVVESHISKLRKKL-RNKLGFDPVDSKRFLGYSI 220 G + + + + LR+KL + + ++ +GY + Sbjct: 185 GPTHTD-DSHYLRIVVGHLRQKLADDPTAPRFILTEPGIGYRL 226 >gi|229099979|ref|ZP_04230899.1| Two-component response regulator vanRB [Bacillus cereus Rock3-29] gi|228683407|gb|EEL37365.1| Two-component response regulator vanRB [Bacillus cereus Rock3-29] Length = 214 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 44/220 (20%), Positives = 91/220 (41%), Gaps = 9/220 (4%) Query: 5 IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64 ++D +++ + + + D+ ++ E+ Sbjct: 2 VEDDQEIQELIKQFLMTQQYKVIVASDGLEGMKQFNKQSFDLILLDVM--MPNLNGFEVA 59 Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRLKVS 122 ++IR+ S +P+I ++ Q + FD G+DD + KP ++ RV A + + Sbjct: 60 KMIRSQSNIPIILLTALEEEQDQMKGFDLGIDDYITKPFSFHVLMRRVEAVLRRSNNQST 119 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 +N + V D V PL +E IL+ L+ N K + + I I+G ++ Sbjct: 120 DNHFVFRELHVNGDAYKVYVNKVEVPLTTKEFEILQLLLQNEKKVLTRENIVEKIWG-YE 178 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 A + ++++H+ +RKKL + + + +GY ID Sbjct: 179 YAGDTRMIDTHMKNIRKKLDIP----YIKTVKGIGYKIDE 214 >gi|237654696|ref|YP_002891010.1| two component heavy metal response transcriptional regulator, winged helix family [Thauera sp. MZ1T] gi|237625943|gb|ACR02633.1| two component heavy metal response transcriptional regulator, winged helix family [Thauera sp. MZ1T] Length = 226 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 34/222 (15%), Positives = 87/222 (39%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D D + G ++ L S D+ ++ L Sbjct: 3 ILIVEDEVKTGDYLRQGLTEAGFVVDLARDGLDGLHLALSGDYDLIVLDVML--PSLDGW 60 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPI-HHREILARVAAIYRRL 119 + + +R + P++ ++ ++ + + G DD + KP + + R Sbjct: 61 AILQTLRRSGRENPVLFLTARDQIEDRVRGLELGADDYLVKPFAFSEFLARVRTLLRRGR 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + + + R G+ L +E +LE L+ +G+ + ++ I S ++ Sbjct: 121 SHEPDTLRSANLELDLLRRRVTRCGQRIDLTAKEFALLELLLRRKGEVLPRSLIASQVWD 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + + NV+E + +LR K+ + + + R +GY ++ Sbjct: 181 M-NFDSDTNVIEVAVRRLRVKVDDPFEPKLIRTVRGMGYVLE 221 >gi|194292693|ref|YP_002008600.1| response regulator in two-component regulatory system with cops, regulation of copper resistance [Cupriavidus taiwanensis LMG 19424] gi|193226597|emb|CAQ72548.1| response regulator in two-component regulatory system with CopS, regulation of copper resistance [Cupriavidus taiwanensis LMG 19424] Length = 241 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 40/223 (17%), Positives = 98/223 (43%), Gaps = 6/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + + G ++ ++ + + + D+ ++ L Sbjct: 3 LLVVEDESKTGEYLRQGLTEAGFVVDLVHNGLDGQHMAMTEPYDLIILDVML--PDVDGW 60 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118 + + +RA + VP++ ++ S+ + + G DD + KP E+LARV Sbjct: 61 RIVQALRAGQNPVPVLFLTARDSVADRVKGLELGADDYLVKPFAFSELLARVRTLLRRGT 120 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 +++ +R + + + R G L +E +LE L RG+ + ++ I S ++ Sbjct: 121 AQMTLDRIQVADLVLDLTRRRATRAGRRITLTSKEFALLELLARRRGEVLPRSLIASQVW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + + NV++ I +LR K+ + + + R +GY ++ Sbjct: 181 DM-NFDSDSNVIDVAIRRLRAKIDDGFDARLIQTVRGMGYVLE 222 >gi|182412431|ref|YP_001817497.1| two component transcriptional regulator [Opitutus terrae PB90-1] gi|177839645|gb|ACB73897.1| two component transcriptional regulator, winged helix family [Opitutus terrae PB90-1] Length = 248 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 40/225 (17%), Positives = 85/225 (37%), Gaps = 8/225 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +V+ + G + E + + ++ L Sbjct: 17 ILIVDDDPMVRAVVGSCLVRQGYRVLEAADGEQAMERIVREKPALVVLDI--EMPRVGGL 74 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + +R P++ +S + ++ G DD + KP + E+LAR+ A+ RR Sbjct: 75 AVLSRLRESGNLTPVLIVSSRSHVDDRVNGLSLGADDYLTKPFNQEELLARIRALLRRQA 134 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLP---RRERRILEYLMANRGKRVAKTQIFSAI 177 + + D R E IL+ L G V++ ++F + Sbjct: 135 ATETPIQRLQFGDVEVALDKRTAVCKGRTTRLSRTECAILDLLARYAGTPVSRERLFDLV 194 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 +G + E +++H+ +LRKK+ + + + +GY +D Sbjct: 195 WG-YTYLPETRTLDTHVWRLRKKIGDTGEEPRWIKNVPGVGYQLD 238 >gi|38232699|ref|NP_938466.1| putative two-component system response regulator [Corynebacterium diphtheriae NCTC 13129] gi|38198957|emb|CAE48572.1| Putative two-component system response regulator [Corynebacterium diphtheriae] Length = 240 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 46/225 (20%), Positives = 86/225 (38%), Gaps = 10/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + G ++ DV ++ L LE Sbjct: 16 LVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGL--PELDGLE 73 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 + R IR S ++ ++ S + G DD + KP RE++ RV A+ RR + S Sbjct: 74 VCRRIRTFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRRPRTS 133 Query: 123 NNRAETGPI------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + V+ + L R E +L L G+ + + + + Sbjct: 134 TTPPQVTTPLIVGDLILDPVAHQVRVEETIVELTRTEFELLVALALRPGQALTRHDLVTE 193 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSI 220 ++ +E +V+ HI LR+KL G +D+ R +GY + Sbjct: 194 VWDTT-WVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGYRM 237 >gi|329928077|ref|ZP_08282039.1| putative transcriptional regulatory protein OmpR [Paenibacillus sp. HGF5] gi|328938068|gb|EGG34466.1| putative transcriptional regulatory protein OmpR [Paenibacillus sp. HGF5] Length = 239 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 47/232 (20%), Positives = 94/232 (40%), Gaps = 19/232 (8%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + ++DD +++ A +G G + E + + D+ ++ L G Sbjct: 6 LIAVVDDDLHIRNLVEAYLRKEGYRTVGLGTAEEGWDMWRTNPPDMWVLDIML--PGMDG 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL R IRA ++VP+I IS S + + G DD + KP RE++AR+ R Sbjct: 64 FELCRRIRAEAEVPIIMISAKDSEVDKILGLELGSDDYMVKPFSPRELVARIKRQLSRWY 123 Query: 121 VSNNRAETG------------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 N+ +++ + R GE + +E +L + + Sbjct: 124 KFNHAEHVPRLAAASPELSNGRLQLLLEERRVFWNGEEVDMTNKEFEMLRVFAEHPNRAF 183 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + ++ ++++G D + V+ I +LRKK+ +++ GY + Sbjct: 184 TRDELLTSVWG-DDYFGSDRAVDHLIKRLRKKVEQLP----IEAIWGHGYRM 230 >gi|289422899|ref|ZP_06424728.1| two-component system, response regulator [Peptostreptococcus anaerobius 653-L] gi|289156686|gb|EFD05322.1| two-component system, response regulator [Peptostreptococcus anaerobius 653-L] Length = 217 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 43/220 (19%), Positives = 103/220 (46%), Gaps = 7/220 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 + ++D ++++G + G ++ +S D++ + + L Sbjct: 3 ILTVEDNNMIREGISEYLSEFGYTVIQAKDGREALSKFNS---DINLVILDIQIPFINGL 59 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IR S +P++ ++ + + +D F + VD V KP + AR+ ++ ++ Sbjct: 60 EVLKEIRKKSNLPILILTAFSDEEYKIDAFTNLVDGYVEKPFSLPVLKARIDSLIKKNYG 119 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 ++ E + V + ++ GE + +E +L+ L+ N G+ + + QI ++ Sbjct: 120 HLDKFEYKDLSVNFNSYTAKINGEEIDVNAKELEVLKCLLDNSGQVLTRMQIIDYVWKDS 179 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +E + V++ +I +LRKKL+ D + + R +GY ++ Sbjct: 180 EEIPYDRVIDVYIKELRKKLQL----DCITTIRNVGYKLE 215 >gi|225570853|ref|ZP_03779876.1| hypothetical protein CLOHYLEM_06957 [Clostridium hylemonae DSM 15053] gi|225160315|gb|EEG72934.1| hypothetical protein CLOHYLEM_06957 [Clostridium hylemonae DSM 15053] Length = 224 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 45/221 (20%), Positives = 85/221 (38%), Gaps = 7/221 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD + F G + + + + D+ ++ G Sbjct: 5 ILIADDEQGIIQLLKDYFEIQGYRVLEALNGAEVLEKLA-RKPDIILLDV--SMPGIDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R IR+H P++ ++ Q ++ G DD + KP E+ ARV A RR + Sbjct: 62 EVCRRIRSHISCPILFLTARIEEQDRINGLKLGGDDYIMKPFSIEELGARVEAHLRREER 121 Query: 122 SNNRAETGPIRVFSDGRDP---EVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + + L + E I+E L N G+ +K Q++ Sbjct: 122 KRLNGSVLMSDRLAIRYSERSVYYENDQVNLTKMEFDIVELLSMNPGQVFSKDQLYEKTR 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 G +D A + ++V HI ++R KL +++ +GY Sbjct: 182 G-YDGAGDSSIVTEHIRRIRTKLAEYTEKSYIETVWGVGYK 221 >gi|159897434|ref|YP_001543681.1| two component transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159890473|gb|ABX03553.1| two component transcriptional regulator, winged helix family [Herpetosiphon aurantiacus ATCC 23779] Length = 238 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 37/230 (16%), Positives = 83/230 (36%), Gaps = 16/230 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + + + G + L + D+ ++ L L Sbjct: 8 ILVVEDAVDLAEVLVRELSNLGYQVWHAADGRTALSLHQQHQPDLVILDWML--PQLDGL 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-----------REILA 110 E+ R IR P++ ++ + + G DD + KP R Sbjct: 66 EVLRTIRQTKSTPVLMLTARSEETDLVVGLELGADDYLTKPFGMRELIARVRALLRRDQR 125 Query: 111 RVAAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + + + G + + ++ + L E IL+ L+ N G+ ++ Sbjct: 126 IQQLLQADAQPATEVLRYGDLVLDPHLHIVALRQQELDLTPTEFAILDLLLRNPGRAFSR 185 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + I+G + V++ + +LRKKL + D +++ LGY + Sbjct: 186 NYLLDTIWGQS-YVGGDRSVDNAMLRLRKKLADFG--DAIETVWGLGYRL 232 >gi|90022993|ref|YP_528820.1| response regulator receiver domain-containing protein [Saccharophagus degradans 2-40] gi|89952593|gb|ABD82608.1| response regulator receiver [Saccharophagus degradans 2-40] Length = 225 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 58/221 (26%), Positives = 96/221 (43%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D ++ F +E E +L S D++ ++ L + Sbjct: 3 LLVIEDEQAIRQQLEDFFKSQKFVIESAEDGEEGLYLGSEYDYDLAIVDIGL--PKLDGI 60 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119 E+ + +RA P++ ++ Q +D ++G DD + KP H E+ AR A I R Sbjct: 61 EVVKTLRARGRNFPILILTARGHWQDKVDGLEAGADDYLVKPFHTEELRARANALIRRSA 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + GPI + + + + G L E LEYL N GK ++KT + +Y Sbjct: 121 GKAAPEMVFGPININTANKSVSLNGAAVELTSFEYNTLEYLALNAGKPISKTVLTEHLYH 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 D + NV+E I +LRKKL P+ + R LGY Sbjct: 181 Q-DFERDSNVIEVFIGRLRKKLDPDGDLKPIKTVRGLGYRF 220 >gi|313107944|ref|ZP_07794113.1| putative two-component response regulator [Pseudomonas aeruginosa 39016] gi|310880615|gb|EFQ39209.1| putative two-component response regulator [Pseudomonas aeruginosa 39016] Length = 228 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 42/224 (18%), Positives = 97/224 (43%), Gaps = 6/224 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G +++ + E L D+ ++ L G Sbjct: 5 LLIVEDEPRIGQYLRQGLAEAGFAVDLSDDGNEGEQLALGGDYDLLILDVML--PGRDGW 62 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118 ++ R +R +P++ ++ +++ + + G DD + KP E+LARV Sbjct: 63 QILRSVRDAGMTIPVLFLTARDAVEDRVRGLEQGADDYLVKPFAFVELLARVRTLLRRGS 122 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++ + + + R + QG+ L +E +LE L+ G+ + K+ I S ++ Sbjct: 123 QQLQETTLQLADLELDLLRRRVQRQGKRIDLTAKEFALLELLLRRSGEVLPKSLIASQVW 182 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + + + NV+E I +LR K+ + + + R +GY ++ Sbjct: 183 DM-NFDSDTNVIEVAIRRLRAKVDDDYPQRLIHTVRGMGYVLEE 225 >gi|319424670|gb|ADV52744.1| two component transcriptional regulator, winged helix family [Shewanella putrefaciens 200] Length = 239 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 48/222 (21%), Positives = 100/222 (45%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D A D + F + G ++E N L +S + D+ ++ L L Sbjct: 17 ILLVEDDATTIDYIVKGFLEQGHNIETANDGHQGLSLATSCQYDLVILDRML--PQLDGL 74 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--ILARVAAIYRR 118 +L +RA P++ +S + + +G DD + KP E + A + Sbjct: 75 KLLAALRATGNQTPVLILSALAHVDERVKGLRAGGDDYMTKPFAFSELLVRAEKLMQRGQ 134 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + G +++ R+ + G+ L +E ++L+YLM + + +++T +F A++ Sbjct: 135 STPISTDLVVGGLKMELLTRNVTLDGQELMLQPKEFQLLKYLMEHANQVISRTLLFEAVW 194 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + NV++ HI+KLR+K + +++ R GY + Sbjct: 195 D-YHFDPRTNVIDVHIAKLRRKFEELGHGELIETVRGAGYRL 235 >gi|313617375|gb|EFR89783.1| regulatory protein VanR [Listeria innocua FSL S4-378] Length = 231 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 48/229 (20%), Positives = 87/229 (37%), Gaps = 12/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD + D ++G ++ L + + ++ L Sbjct: 5 ILIADDDKEIVDLVKLYLQNEGYTIYQAYDGAEVWRLVQEKQPTLVILDIM--MPEMNGL 62 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH-------REILARVA 113 E+ R++R + P++ +S + +G DD + KP + + IL R+ Sbjct: 63 EVCRLMRKNGILTPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAILRRMQ 122 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + VS ++ GPI V V + L E IL L + G+ + I Sbjct: 123 QMSQAEPVSQDKVIIGPIVVDRGLHVVTVGEKELHLTTSEFDILFLLASEPGRVFSSEYI 182 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221 F I+ V HIS LR KLR+ G + + + +GY I+ Sbjct: 183 FEKIWQEKAL-GASKTVMVHISNLRDKLRDAMGGENVIKTIWGVGYKIE 230 >gi|307300861|ref|ZP_07580636.1| two component transcriptional regulator, winged helix family [Sinorhizobium meliloti BL225C] gi|307320002|ref|ZP_07599424.1| two component transcriptional regulator, winged helix family [Sinorhizobium meliloti AK83] gi|306894379|gb|EFN25143.1| two component transcriptional regulator, winged helix family [Sinorhizobium meliloti AK83] gi|306904395|gb|EFN34980.1| two component transcriptional regulator, winged helix family [Sinorhizobium meliloti BL225C] Length = 230 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 44/223 (19%), Positives = 81/223 (36%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ G + + +A DV ++ L Sbjct: 6 ILVVDDEPQIQRFLRPALAAAGYEVIEAANGAQALKAAVTAAPDVVILDLGL--PDMDGK 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ IRA SQVP+I +S + D G DD + KP E+ AR+ A R Sbjct: 64 DVVANIRAWSQVPIIILSARDRESEKIAALDLGADDYIEKPFGIGELTARIRAALRHRIQ 123 Query: 122 SNNRAETGPIR---VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + R G L +E +L L + G+ V + ++++ Sbjct: 124 MAGGQAQLSADGLSIDMVKRVVTRDGAALRLTPKEYDLLVMLAHHAGRVVTHRTLLTSVW 183 Query: 179 GLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 GL + + + I +LR K+ + V ++ +GY Sbjct: 184 GLAHGE-DLHYLRVFIGQLRGKIERDPGNPKIVRTEPGVGYRF 225 >gi|291542174|emb|CBL15284.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Ruminococcus bromii L2-63] Length = 235 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 45/230 (19%), Positives = 93/230 (40%), Gaps = 11/230 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ +D A ++D + G + + E D ++ G Sbjct: 4 ILVCEDEAAIRDFVVINLTRAGYDVVEADCGEAALQKYEENNGDFDVAILDVMMPGIDGF 63 Query: 62 ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 ++ + + + + +I +S + G DD V KP E+LARV ++YRR+ Sbjct: 64 QVCKELRNRNGGIGIIMLSAKTQEMDKVTGLMLGADDYVTKPFSPSELLARVDSLYRRVA 123 Query: 121 VSNNRAETGP--------IRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 ++ + +E + R G++ L + E +I+EY +N G + + Sbjct: 124 LAQSHSENNFKEELKSGEFTLNLRNRALMKSGKMIELTQVEFQIMEYFFSNPGVALDRID 183 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 I + ++G E+ +V+ +I +LR K+ + + + LGY D Sbjct: 184 ILNHVWG-DAYVGEDKIVDVNIRRLRMKVEDEPSNPKHIITVWGLGYKWD 232 >gi|228970770|ref|ZP_04131410.1| Two-component response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228788895|gb|EEM36834.1| Two-component response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] Length = 242 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 44/220 (20%), Positives = 76/220 (34%), Gaps = 6/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L+DD + + G + NS E + ++ Sbjct: 21 ILLVDDEPRMLELLTLYLTPIGYNCVCANSGEEAILHIENQNFKFVLLDIM--MPKMDGW 78 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E + IR+ S +P+I ++ + G DD V KP H E+ R Sbjct: 79 ETCKKIRSFSNIPIIMVTARDQTVDVVQGLKLGADDYVTKPFHEEEL-FARIEAVLRRTN 137 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + + I V E L E +L + + + + Q+ I+GL Sbjct: 138 EHKQIQYHGIVWDETKHFVSVHNEELLLTPIEFSLLGLFLRHVNYVLNRDQLIERIWGL- 196 Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219 + E+ V+SHI LR KLR + + +GY Sbjct: 197 NTNTEDRTVDSHIRNLRDKLRKAHFPIDHHLKTVYGVGYR 236 >gi|225022167|ref|ZP_03711359.1| hypothetical protein CORMATOL_02201 [Corynebacterium matruchotii ATCC 33806] gi|305680419|ref|ZP_07403227.1| putative response regulator MprA [Corynebacterium matruchotii ATCC 14266] gi|224945100|gb|EEG26309.1| hypothetical protein CORMATOL_02201 [Corynebacterium matruchotii ATCC 33806] gi|305659950|gb|EFM49449.1| putative response regulator MprA [Corynebacterium matruchotii ATCC 14266] Length = 234 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 46/225 (20%), Positives = 88/225 (39%), Gaps = 11/225 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + G + S + + D ++ G E Sbjct: 9 LVVDDEPNIVELLTVSLKFQGFEVATATSGLQALEVAPEFKPDAFILDVM--MPGMDGFE 66 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA------I 115 L +RA P++ ++ +++ + G DD V KP E++ R+ Sbjct: 67 LLPKLRALGFEGPVLFLTAKDAVEHRIHGLTIGADDYVTKPFSLEEVITRLRVILRRGAQ 126 Query: 116 YRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 +N + + D + G V L E +L YLM N ++K +I Sbjct: 127 VAEEVEDDNVLTYDDLVLNDDTHEVTKGGTVVELSPTEFNLLRYLMLNAEVVLSKPKILD 186 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +D + NVVES+IS LR+K+ + + + R +GY + Sbjct: 187 NVW-HYDFGGDGNVVESYISYLRRKI-DTGDVPLIHTVRGVGYVL 229 >gi|157148989|ref|YP_001456308.1| osmolarity response regulator [Citrobacter koseri ATCC BAA-895] gi|157086194|gb|ABV15872.1| hypothetical protein CKO_04827 [Citrobacter koseri ATCC BAA-895] Length = 290 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 38/229 (16%), Positives = 90/229 (39%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ + G + + E + L + + ++ L GE L Sbjct: 58 ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLML--PGEDGL 115 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112 + R +R+ S +P+I ++ + + G DD + KP + RE + + Sbjct: 116 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 175 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + G ++ R+ + E PL E +L+ L+++ + +++ + Sbjct: 176 NELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 235 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 + + G + + E ++ IS+LR+ + + + LGY Sbjct: 236 LMNLARGR-EYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 283 >gi|77459613|ref|YP_349120.1| two component transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77383616|gb|ABA75129.1| two-component system, response regulator [Pseudomonas fluorescens Pf0-1] Length = 235 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 44/223 (19%), Positives = 85/223 (38%), Gaps = 7/223 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +L++D + G + + + + V ++ L G+ L Sbjct: 10 LLVEDDERLAALIAHFLEQHGYEVRTVHRGDLAVAAFLEFKPKVVVLDLML--PGQSGLH 67 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR---EILARVAAIYRRL 119 + R IR+ S P++ ++ + +SG DD V KPI L + Sbjct: 68 VCREIRSVSDTPIVILTAKEDDLDHILGLESGADDYVIKPIKPPVLLARLRALQRRQVPD 127 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + E G + + R+ + GE+ L E +L L + GK +++ I + + G Sbjct: 128 SGVVSSLEFGNLIIDRSCREVRLAGELIELTTMEFELLWLLASAAGKILSRDDILNRMRG 187 Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 + V+ +ISKLR KL++ + + GY + Sbjct: 188 IA-FDGLNRSVDVYISKLRNKLKDNPREPVCIKTVWGKGYLFN 229 >gi|109898617|ref|YP_661872.1| two component transcriptional regulator [Pseudoalteromonas atlantica T6c] gi|109700898|gb|ABG40818.1| two component transcriptional regulator, winged helix family [Pseudoalteromonas atlantica T6c] Length = 244 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 56/229 (24%), Positives = 97/229 (42%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFE-EWLQSSAREDVSAIEAFLIGKGEKV 60 +L+DD + ++G +E +S E L S D ++ G Sbjct: 8 ILLVDDDETLCSLLSEFLQEEGFEVETLHSGNAATERLLQSDEFDTVVLDIM--MPGMSG 65 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L++ R +RA QVP++ ++ + + G DD + KP + RE+ AR+ AI RR + Sbjct: 66 LDVLRSVRAKRQVPILMLTGRGDDIDRIVGLEMGADDYLGKPCNPRELSARIKAIIRRTE 125 Query: 121 V---------SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKT 171 + A I + + R V PL E L LM G+ + K Sbjct: 126 NSLGNGAAGKTIVHALLHGIELDTGTRTAVVNNTTLPLTSAEFNALSLLMERAGQTITKQ 185 Query: 172 QIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + EA + ++ HIS++R+KL ++ D + S R +GY + Sbjct: 186 DMTQEVLNRPLEAYD-RAMDVHISRIRQKLSSQGINDVIKSIRGVGYQM 233 >gi|103486250|ref|YP_615811.1| two component transcriptional regulator [Sphingopyxis alaskensis RB2256] gi|98976327|gb|ABF52478.1| two component transcriptional regulator, winged helix family [Sphingopyxis alaskensis RB2256] Length = 244 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 42/228 (18%), Positives = 90/228 (39%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LIDD +++ G ++ S + + D+ + GE L Sbjct: 9 ILLIDDEPSIREPLGEYLTAQGFAVTDAASAAEARSVLRAKSVDLVVSDIM--MPGEDGL 66 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R +R S +P+I ++ + + G DD V KP + RE++AR+ + RR + Sbjct: 67 SLTRHLRETSSIPVILLTARAEDTERIIGLEIGADDYVVKPFNPRELVARIRTVLRRTQQ 126 Query: 122 SNNRAETGPIRVFSDGRDPEVQGE--------VFPLPRRERRILEYLMANRGKRVAKTQI 173 + + G L E +L L+ + + +++ ++ Sbjct: 127 NGRSLDAGGTCYAFGDWVLREVERVLVDGKGSEVALSSGEYHLLHALVRHPRQVMSRDRL 186 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + G + + + +++ +S+LRKK+ + V + GY++ Sbjct: 187 LDLVRGR-EADIFDRAIDNLVSRLRKKIEADPAHPQIVKTVWGGGYTL 233 >gi|331698780|ref|YP_004335019.1| winged helix family two component transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326953469|gb|AEA27166.1| two component transcriptional regulator, winged helix family [Pseudonocardia dioxanivorans CB1190] Length = 247 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 50/223 (22%), Positives = 95/223 (42%), Gaps = 9/223 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD A + D +G + R D ++ L LE Sbjct: 23 LVVDDEATLSDLLGMALRYEGWDVRTEADGASAVRAAREFRPDAVVLDVML--PDLDGLE 80 Query: 63 LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R +RA VP++ ++ +++ + +G DD V KP E++AR+ + RR + Sbjct: 81 VLRRMRADTPDVPVLFLTAKDAVEDRVAGLTAGGDDYVTKPFSLEELVARLRGLLRRSGM 140 Query: 122 SNNRAETG----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + + + + D + L E +L +LM N + ++K QI + Sbjct: 141 TAAQQGSELAVGDLTLDEDSHEVRRGDVEVDLTATEFELLRFLMRNPRRVLSKAQILDRV 200 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + +D + NVVE +IS LRKK+ + + + R GY + Sbjct: 201 W-HYDFGGQSNVVELYISYLRKKI-DNGRAPMIHTVRGAGYVL 241 >gi|260435890|ref|ZP_05789860.1| two component transcriptional regulator, winged helix family [Synechococcus sp. WH 8109] gi|260413764|gb|EEX07060.1| two component transcriptional regulator, winged helix family [Synechococcus sp. WH 8109] Length = 262 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 39/229 (17%), Positives = 84/229 (36%), Gaps = 10/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +LI+D ++D G ++ + + L D+ ++ L G + Sbjct: 5 ILLIEDDQDMRDLVSGHLEHSGFDVQRADDGIKGQALALQYTPDLILLDLMLPKVDGLTL 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVA 113 + R + +P++ ++ + + F+SG DD + KP E+ R Sbjct: 65 CQRLRRDDRTAGIPILMLTALGGTKDKVSGFNSGADDYLTKPFDLEELQVRIKALLRRSD 124 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 N GP+ + + + + L E +L L+ G+ VA + I Sbjct: 125 RAPVGSSNHNEILSYGPLTLVPERFEAIWFDQPVRLTHLEFELLHCLLQRHGQTVAPSLI 184 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSID 221 ++G ++ + + H+ LR KL + + + GY ++ Sbjct: 185 LKEVWG-YEPDDDIEAIRVHVRHLRTKLEPDPRKPRFIKTVYGAGYCLE 232 >gi|254520861|ref|ZP_05132917.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA] gi|226914610|gb|EEH99811.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA] Length = 232 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 42/230 (18%), Positives = 88/230 (38%), Gaps = 13/230 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + ++G ++ + D+ I L+ Sbjct: 6 ILVVDDDKEITEAIEIYLINEGYNVLVAYDGVQALKIAREE--DIHLIIMDLMMPNLDGT 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 +R ++P+I +S + + G DD + KP + E++ARV + RR Sbjct: 64 RATIELRREKEIPIIMLSAKSEDSDKILGLNLGADDYLTKPFNPLELIARVNSQIRRYTR 123 Query: 122 SNNRAETGPIRV--------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 ++ V ++ V G+ L E +IL LM+N G+ + +I Sbjct: 124 FSSMTNDKNKEVIAVGGLELNRLNKEVNVNGKEAKLTPLEFKILSLLMSNLGRVFSIEEI 183 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 + ++ V+ V HI ++R+K+ + + +GY +D Sbjct: 184 YERVWNEAPYNVD--TVTVHIRRIREKIEIDPRNPQYLKVVWGVGYKVDK 231 >gi|223983749|ref|ZP_03633920.1| hypothetical protein HOLDEFILI_01201 [Holdemania filiformis DSM 12042] gi|223964295|gb|EEF68636.1| hypothetical protein HOLDEFILI_01201 [Holdemania filiformis DSM 12042] Length = 230 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 42/222 (18%), Positives = 93/222 (41%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + G ++ ++ + ++ + DV ++ L Sbjct: 4 ILIVDDNESICNILYHYGKEAGYTMVIAHTGQEGLTYFTNYKPDVILLDVML--PDIDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRL 119 E+ + IR S+VP++ I+ + Q + D G DD + KP +E++AR+ A Sbjct: 62 EVCQCIRKVSRVPILMITAKTADQDRVMGLDIGADDYILKPFSCQEVMARIRAVLRRTED 121 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 G + + + G L ++E +L L ++ G+ ++ + ++G Sbjct: 122 NPEQADFVYGNLMIQESRNLVSLDGNPINLTKKEMELLVLLASHPGRVYSREILLDLVWG 181 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDP-VDSKRFLGYSI 220 E+ + V+S + +LR KL + + +GYS Sbjct: 182 YSGESYD-RAVDSCVKRLRAKLDEYPHPCFSIKTIWGVGYSF 222 >gi|167893004|ref|ZP_02480406.1| DNA-binding response regulator [Burkholderia pseudomallei 7894] Length = 237 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 53/225 (23%), Positives = 97/225 (43%), Gaps = 11/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ +D +++ DG G +++ + + S D+ ++ L L Sbjct: 3 ILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQTFDLLILDLGL--PRMSGL 60 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119 E+ R +RA +S +P++ ++ S+ + D G DD + KP E+ ARV A R Sbjct: 61 EVLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRRGA 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI-- 177 G + GR + L RE +LE L+ G+ V+K Q+ + Sbjct: 121 GGGPTVVRHGSLSFDQVGRIAYANERMLELSARELGLLEVLLQRIGRLVSKEQLVDHLCE 180 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 +G E V N +E ++ +LRKK+ + + R LGY ++ Sbjct: 181 WG---EEVSNNAIEVYVHRLRKKIEPSG--VRITTVRGLGYCLEK 220 >gi|116073926|ref|ZP_01471188.1| two-component response regulator [Synechococcus sp. RS9916] gi|116069231|gb|EAU74983.1| two-component response regulator [Synechococcus sp. RS9916] Length = 265 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 38/229 (16%), Positives = 83/229 (36%), Gaps = 10/229 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 +LI+D +++ +G ++ + + L D+ ++ L G + Sbjct: 5 ILLIEDDGDMRELVGGHLEHNGFDVQRADDGIKGQALALQYTPDLILLDLMLPKVDGLTL 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREIL-------ARVA 113 + R + +P++ ++ + + F+SG DD + KP E+ R Sbjct: 65 CQRLRRDERTAGIPILMLTALGGTKDKVSGFNSGADDYLTKPFDLEELQVRVKALLRRSD 124 Query: 114 AIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 N GP+ + + + L E +L L+ G+ VA + I Sbjct: 125 RAPVGSSNHNEILSYGPLTLVPERFEAIWFDTPVRLTHLEFELLHCLLQRHGQTVAPSLI 184 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 ++G ++ + + H+ LR KL + + GY ++ Sbjct: 185 LKEVWG-YEPDDDIETIRVHVRHLRTKLEPDPRKPRFIKTVYGAGYCLE 232 >gi|238789085|ref|ZP_04632874.1| Two-component response regulator of virulence determinant [Yersinia frederiksenii ATCC 33641] gi|238722849|gb|EEQ14500.1| Two-component response regulator of virulence determinant [Yersinia frederiksenii ATCC 33641] Length = 223 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 55/223 (24%), Positives = 106/223 (47%), Gaps = 5/223 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D AL++ + G ++ + ++ D++ I+ L GE L Sbjct: 4 LVVEDNALLRHHLTVQMREMGHQVDAAEDAKEADYFLQEHAPDIAIIDLGL--PGEDGLS 61 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120 L R R+H P++ ++ S Q + ++G DD V KP H E++AR+ A + R + Sbjct: 62 LIRRWRSHQTNLPILVLTARESWQDKVAVLEAGADDYVTKPFHLEEVIARIQALMRRNIG 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 +++ + P ++ R+ V + L E I+E L+ N GK V+K + +Y Sbjct: 122 LASQVIDFPPFQIDLSRRELSVNQQQIKLTAFEYTIIETLIRNAGKVVSKDTLMLQLY-P 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 E E + ++ + +LRKKL+ + + + + R GY D N Sbjct: 181 DAELRESHTIDVLMGRLRKKLQAEHEGEVITTIRGQGYRFDAN 223 >gi|325679778|ref|ZP_08159352.1| putative sensory transduction protein RegX3 [Ruminococcus albus 8] gi|324108593|gb|EGC02835.1| putative sensory transduction protein RegX3 [Ruminococcus albus 8] Length = 228 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 50/223 (22%), Positives = 89/223 (39%), Gaps = 6/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + G + E L + ++ L Sbjct: 6 ILIVDDEQELSGIIAEMLAGCGYDTDTAADSEHAYSLLGQKNYHLILLDINL--PDGTGF 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA--AIYRRL 119 E+ R +R S VP+I S + ++ FD G DD + KP +E+L+RV Sbjct: 64 EICRQLREASHVPVIFASARTAEDDRINSFDIGGDDYLQKPYSMKELLSRVNALMRRAYG 123 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + G +++ + R G L +RE +L L N+ V K ++ S ++G Sbjct: 124 GEVDGSLGFGDVKINTASRTVIKGGRNVALAQREFDLLCCLCRNKNTAVPKDKLISEVWG 183 Query: 180 LFDEAVEENVVESHISKLRKKLRNKL-GFDPVDSKRFLGYSID 221 F VE + + HI LR+KL + + + LGY ++ Sbjct: 184 AF-SEVEPSTLTVHIRWLREKLEDDPAAPVYIKTVWRLGYMLE 225 >gi|288937248|ref|YP_003441307.1| two component transcriptional regulator, winged helix family [Klebsiella variicola At-22] gi|290512652|ref|ZP_06552018.1| two-component system, OmpR family, catabolic regulation response regulator CreB [Klebsiella sp. 1_1_55] gi|288891957|gb|ADC60275.1| two component transcriptional regulator, winged helix family [Klebsiella variicola At-22] gi|289774993|gb|EFD82995.1| two-component system, OmpR family, catabolic regulation response regulator CreB [Klebsiella sp. 1_1_55] Length = 229 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 46/224 (20%), Positives = 90/224 (40%), Gaps = 8/224 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 L++D + D + +G + F + DV+ ++ L Sbjct: 6 IWLVEDEQSIADTLVYPLQQEGFQVTVFGRGLPALEAAAHQAPDVAILDVGL--PDISGF 63 Query: 62 ELPRI-IRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVA---AIYR 117 EL R + + +P++ ++ L + G DD + KP RE+ ARV + Sbjct: 64 ELCRRMLTRYPALPVLFLTARSDEVDKLLGLEIGADDYIAKPFSPREVCARVRTVLRRLQ 123 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + + G + G+ L R E +L+ L+ G+ ++ Q+ + Sbjct: 124 KFAAPSPVVRVGEFVLDEQAASISWFGQPLNLTRYEFLLLKTLLHAPGRVFSRQQLMELV 183 Query: 178 YGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 + E+++ V++HI LR KLR P+++ R +GYS+ Sbjct: 184 WSDAWESLD-RTVDTHIKTLRAKLRAVNPEVTPINTHRGMGYSL 226 >gi|238917433|ref|YP_002930950.1| two-component system, OmpR family, response regulator [Eubacterium eligens ATCC 27750] gi|238872793|gb|ACR72503.1| two-component system, OmpR family, response regulator [Eubacterium eligens ATCC 27750] Length = 217 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 41/220 (18%), Positives = 100/220 (45%), Gaps = 7/220 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 + ++D ++++G + G ++ S D++ + + L Sbjct: 3 ILTVEDDNMIREGLSEYLSEFGYTVIQAKDGREAL---SEFNSDINLVILDIQIPFINGL 59 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IR S +P++ ++ + + +D F + D + KP + AR+ ++ ++ Sbjct: 60 EVLKEIRKKSNLPILILTAFSDEEYKIDAFTNLADGYIEKPFSLPVLKARIDSLIKKNYG 119 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + E + V + ++ GE + +E +L+ L+ N G+ + + QI ++ Sbjct: 120 HLEKFEYKDLSVNFNSYTAKINGEEIDVNAKELEVLKCLLDNNGQVLTRMQIIDYVWKDS 179 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +E + V++ +I +LRKKL+ D + + R +GY ++ Sbjct: 180 EETPYDRVIDVYIKELRKKLQL----DCITTIRNVGYKLE 215 >gi|152989182|ref|YP_001345963.1| DNA-binding response regulator CreB [Pseudomonas aeruginosa PA7] gi|150964340|gb|ABR86365.1| two-component response regulator CreB [Pseudomonas aeruginosa PA7] Length = 229 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 57/222 (25%), Positives = 97/222 (43%), Gaps = 8/222 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A + D + +G + LQ D+ ++ L Sbjct: 4 ILIVEDEAAIADTLLYALQAEGFATTWVPLAGEALALQERQPADLLILDVGL--PDISGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E + +R S+VP+I ++ + + + G DD V KP RE+ ARV AI +R+ Sbjct: 62 EACKRLRRFSEVPVIFLTARDAEIDRVVGLEIGADDYVVKPFSPREVAARVKAILKRMAP 121 Query: 122 SNNRAE----TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 E GP +V ++ G L R E R+L+ L+ + ++ Q+ A+ Sbjct: 122 RPAPLEEAALHGPFQVDAERVRIHYHGAPLNLTRHEFRLLQTLLGQPERVFSREQLLDAL 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGY 218 G+ EA E ++SHI LR KLR + + + R LGY Sbjct: 182 -GVASEAGYERNIDSHIKSLRAKLRQVNARGEAIQTHRGLGY 222 >gi|37521380|ref|NP_924757.1| two-component response regulator [Gloeobacter violaceus PCC 7421] gi|35212377|dbj|BAC89752.1| two-component response regulator [Gloeobacter violaceus PCC 7421] Length = 223 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 51/221 (23%), Positives = 96/221 (43%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D A + D A+ +G +E E L SS D+ ++ L G L Sbjct: 3 LLLVEDEAELADPLAAMLKREGHVVETSYDGEHAWDLLSSQSFDLVILDWML--PGHSGL 60 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIH-HREILARVAAIYRRL 119 +L R +RA + VP++ ++ ++ + L F++G DD + KP + A + R Sbjct: 61 DLCRRLRAGGRSVPVLMLTARDTIDSKLAGFEAGADDYLVKPFELRELLARVRALLRRPP 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + ++ G + + + G L +E ++LEY M + G+ + QI ++ Sbjct: 121 ERQSDELRLGDLVLDVSNKLVRRAGRPIDLSAKEYQLLEYFMRHPGQLLTHEQILEHVWD 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 E NVV + + LR+K+ G + + GY Sbjct: 181 SGAE-PNSNVVAAQVKLLRRKIDKDAGTALIHTVYGQGYRF 220 >gi|330501332|ref|YP_004378201.1| osmolarity response regulator [Pseudomonas mendocina NK-01] gi|328915618|gb|AEB56449.1| osmolarity response regulator [Pseudomonas mendocina NK-01] Length = 245 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 39/229 (17%), Positives = 93/229 (40%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++ F + G + ++E + L + ++ ++ L GE L Sbjct: 14 ILIVDDDARLRRLLERFFDEQGYRVRAVENVEQMDRLLARELFNLVVLDLML--PGEDGL 71 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112 R +R ++Q+P+I ++ + + + G DD + KP + RE + + Sbjct: 72 SACRRLRESNNQIPIIMLTAKGDESSRIQGLELGADDYLAKPFNPRELLARIKAVLRRQA 131 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + G + R+ + EV L E +L+ L+ + + + + + Sbjct: 132 PVVPGAPGAEDESVSFGDYELSLATRELKKGEEVHMLTTGEFAVLKALVQHAREPLTRDK 191 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + + G + E ++ IS+LR+ + + + + +GY Sbjct: 192 LMNLARGR-EWDALERSIDVQISRLRRLIEPDPSKPRYIQTVWGVGYVF 239 >gi|308068960|ref|YP_003870565.1| sensory transduction protein [Paenibacillus polymyxa E681] gi|305858239|gb|ADM70027.1| Hypothetical sensory transduction protein [Paenibacillus polymyxa E681] Length = 237 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 46/230 (20%), Positives = 91/230 (39%), Gaps = 15/230 (6%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++IDD + +G ++E + + D+ ++ L +E Sbjct: 6 LVIDDEKKISRLLQLELSHEGYAVEIAQTGREGLEKALAGTWDIIILDVML--PEINGVE 63 Query: 63 LPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + + IR + P+I ++ + + D G +D + KP E+LAR+ A R Sbjct: 64 VLKQIRKVDNHTPVIMVTARNTTPDKVSGLDEGANDYITKPFEIEELLARMRASMRHQME 123 Query: 122 SNNRAETGPIRV-----------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170 + R +G L +E +L YLM ++ + + + Sbjct: 124 PIATVLQEEDKPPSRLQVDSLVLERKTRLVMREGNRIELTPKEFDLLLYLMEHKNQVLQR 183 Query: 171 TQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 Q+ ++G FD + NVV+ +I +RKK+ + + + R +GY I Sbjct: 184 DQMIQDVWG-FDFVGDTNVVDVYIRYVRKKIDHGYKKKLIKTVRGVGYCI 232 >gi|238762221|ref|ZP_04623193.1| Two-component response regulator of virulence determinant [Yersinia kristensenii ATCC 33638] gi|238699568|gb|EEP92313.1| Two-component response regulator of virulence determinant [Yersinia kristensenii ATCC 33638] Length = 223 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 56/223 (25%), Positives = 106/223 (47%), Gaps = 5/223 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D AL++ + G ++ + ++ D++ I+ L GE L Sbjct: 4 LVVEDNALLRHHLTVQMREMGHQVDAAEDAKEADYFLQEHAPDIAIIDLGL--PGEDGLS 61 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRLK 120 L R R+H P++ ++ S Q + ++G DD V KP H E++AR+ A + R + Sbjct: 62 LIRRWRSHQTNLPILVLTARESWQDKVAVLEAGADDYVTKPFHLEEVIARMQALMRRNIG 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 +++ E P ++ R+ V + L E I+E L+ N GK V+K + +Y Sbjct: 122 LASQVIEFPPFQIDLSRRELCVNQQQIKLTAFEYTIIETLIRNAGKVVSKDTLMLQLY-P 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 E E + ++ + +LRKK++ K + + + R GY D N Sbjct: 181 DAELRESHTIDVLMGRLRKKMQAKHEGEVITTIRGQGYRFDAN 223 >gi|166365570|ref|YP_001657843.1| two-component response regulator [Microcystis aeruginosa NIES-843] gi|166087943|dbj|BAG02651.1| two-component response regulator [Microcystis aeruginosa NIES-843] Length = 226 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 34/227 (14%), Positives = 92/227 (40%), Gaps = 8/227 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + + + +G ++ ++ L D+ ++ L + L Sbjct: 3 ILIVDDEKELTEPLEQILAQEGYEVDIADNGRTGLELAQENNYDLLILDWML--PQQSGL 60 Query: 62 ELPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIY 116 ++ + + P++ ++ ++ + D+G DD + KP R + A + Sbjct: 61 QICQYLRNQGDTTPVLFLTAKDTIDDRVAGLDAGADDYLVKPFQLRELLARVRALLRRSP 120 Query: 117 RRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 ++++ ++ + + S+ + G L +E ++L M + G+ + QI+ Sbjct: 121 NFEASNSSKLKSADLELDSENQVAYRHGRTISLSAKEVQLLTLFMTHPGQLLTHEQIYQH 180 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 ++ ++ NVV + + LR+K+ +++ GY N Sbjct: 181 LWSEGEQ-PNSNVVPALMRLLRRKIEAAGETPLINTVYGKGYRFGEN 226 >gi|17351934|gb|AAL38203.1|AF319447_1 putative response regulator RR96 [Listeria monocytogenes] Length = 232 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 82/228 (35%), Gaps = 11/228 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD + D ++G ++ L + + ++ L Sbjct: 7 ILIADDDKEIVDLVKLYLQNEGYTIYQAYDGAEVWRLVQEKQPTLVILDIM--MPEMNGL 64 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHH------REILARVAA 114 E+ R++R + P++ +S + +G DD + KP + + + R Sbjct: 65 EVCRLMRDNGILTPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAILRRMQ 124 Query: 115 IYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 + + +GPI V V G+ L E IL L + G+ + IF Sbjct: 125 QMSQAEPVVKIKSSGPIVVDRGLHVVTVGGKELHLTTSEFDILFLLASEPGRVFSSEYIF 184 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNK-LGFDPVDSKRFLGYSID 221 I+ V HIS LR KLR G + + + +GY I+ Sbjct: 185 EKIWQEKAL-GASKTVMVHISNLRDKLREAMGGENVIKTIWGVGYKIE 231 >gi|330818169|ref|YP_004361874.1| DNA-binding response regulator [Burkholderia gladioli BSR3] gi|327370562|gb|AEA61918.1| DNA-binding response regulator [Burkholderia gladioli BSR3] Length = 233 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 55/220 (25%), Positives = 99/220 (45%), Gaps = 9/220 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D ++ +G DG +++ E D+ ++ L + Sbjct: 16 ILLVEDDKMIAEGVRKALKADGFAVDWVQDGEAALTAIGGETYDLMLLDLGL--PKRDGV 73 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119 ++ R +R+ P++ I+ ++ + D+G DD + KP E+ AR+ A I R+ Sbjct: 74 DVLRTLRSRGHALPVLIITARDAVSDRVKGLDAGADDYLVKPFDLDELGARMRALIRRQS 133 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 S + G + + + G L RE +LE L+A G ++K+Q+ +YG Sbjct: 134 GRSESVIRHGALTLDPASHQVTLDGAAVALSAREFALLEALLARPGAVLSKSQLEEKMYG 193 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 + E + N VE +I LRKKL G D + + R LGY Sbjct: 194 -WGEEIGSNTVEVYIHALRKKL----GSDLIRNVRGLGYM 228 >gi|318041850|ref|ZP_07973806.1| two-component response regulator [Synechococcus sp. CB0101] Length = 227 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 47/223 (21%), Positives = 92/223 (41%), Gaps = 7/223 (3%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D ++ L G+ E + L ++ D+ ++ L G LE Sbjct: 4 LIVEDDPVIAGAVAELLQHWGLVTETTGNGLEALALLEASPFDLVLLDLNL--PGLDGLE 61 Query: 63 LPRIIRAHSQVP--LIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R +R ++ ++ SL + + G DD + KP + AR+ A+ RR Sbjct: 62 VCRRLRRMPGNQPLVLMLTARDSLDDNVLGLEQGADDYLVKPFEPALLKARIQALLRRAS 121 Query: 121 VSNNRAETGPIRVFS-DGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + S DGR + L +E +LE LM G+ +K Q+ A + Sbjct: 122 RPLQEDWSWGGLKLSLDGRTASFNQQDLRLTPKEHALLEALMKAGGRTCSKDQLIEAAWA 181 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSID 221 D +E V++H+ +R KL D +++ +G+ ++ Sbjct: 182 WADVPGDE-SVKTHVKNIRAKLNQTGAPADLIETVYGVGFRLN 223 >gi|319793329|ref|YP_004154969.1| two component transcriptional regulator winged helix family [Variovorax paradoxus EPS] gi|315595792|gb|ADU36858.1| two component transcriptional regulator, winged helix family [Variovorax paradoxus EPS] Length = 242 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 51/227 (22%), Positives = 93/227 (40%), Gaps = 12/227 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D A + + D+G ++E D ++ L G LE Sbjct: 8 LIVEDDAHIAELLRMHLRDEGYAIEHAADGHAGLRELERGNWDALVLDLML--PGVDGLE 65 Query: 63 LPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R RA P+I IS S + + G DD + KP E++ARV A+ RR Sbjct: 66 ICRRARAMARYTPIIIISARSSEVHRILGLELGADDYLAKPFSVLELVARVKALMRRTDA 125 Query: 122 SNNRAETG-------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 A + + R+ V G++ L RE +L + N GK ++ + Sbjct: 126 LARNARMESGSLTLGNLDIEPLAREVRVDGKLIELTPREFDLLYFFARNPGKVFSRLDLL 185 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + ++G + E+ V +HI++LR K+ + + + GY + Sbjct: 186 NQVWG-YQHDGYEHTVNTHINRLRTKVETDPAEPRRILTVWGRGYKL 231 >gi|311031011|ref|ZP_07709101.1| two-component response regulator [Bacillus sp. m3-13] Length = 230 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 44/227 (19%), Positives = 85/227 (37%), Gaps = 10/227 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD ++D ++GV + + + ++ + Sbjct: 7 LVVDDEKEIRDAIEIYLKNEGVRVLKAQDGVEALEMLHENEVHLILLDVM--MPRLDGIS 64 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 IR +P+I +S + G DD V KP + E++ARV + RR Sbjct: 65 ATHRIREEKNIPIIILSAKSEDTDKILGLQVGADDYVTKPFNPMELVARVKSQLRRYVTL 124 Query: 123 NNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + ++ VQG+ L E +I+E LM N G+ + I+ Sbjct: 125 GTFEGIKKVIDLNGLTIDKESKEVTVQGDPVKLTPIEYKIVELLMTNAGRVFSINDIYER 184 Query: 177 IYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 ++ E N V HI K+R+K+ + + +GY ++ Sbjct: 185 VWKEPGYNAE-NTVAVHIRKIREKIEIDPKNPRYLKVVWGIGYKMEK 230 >gi|239831456|ref|ZP_04679785.1| Transcriptional activator protein copR [Ochrobactrum intermedium LMG 3301] gi|239823723|gb|EEQ95291.1| Transcriptional activator protein copR [Ochrobactrum intermedium LMG 3301] Length = 235 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 47/222 (21%), Positives = 86/222 (38%), Gaps = 6/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D F + G S + E L + DV ++ L L Sbjct: 3 ILVIEDDREAARYLEKAFTEAGHSADIAGDGETGYALAENGSYDVLVVDRML--PKRDGL 60 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118 + +RA P++ +S + + +G DD + KP E+ V Sbjct: 61 SVVAGLRAKGMETPVLVLSALGEVDDRVTGLRAGGDDYLTKPYAFSELLARVEVLQRRSS 120 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + ++ G + + Q L RE R+LEYLM + G+ V +T + ++ Sbjct: 121 PREADTIYRVGDLELDRLAHTARRQDVDITLQPREFRLLEYLMRHAGQVVTRTMLLENVW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + NV++ HIS+LR K+ + + R GY + Sbjct: 181 D-YHFDPQTNVIDVHISRLRSKIEKGFDVPLLHTVRGAGYML 221 >gi|229104138|ref|ZP_04234811.1| Two-component response regulator vanRB [Bacillus cereus Rock3-28] gi|228679273|gb|EEL33477.1| Two-component response regulator vanRB [Bacillus cereus Rock3-28] Length = 214 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 44/220 (20%), Positives = 91/220 (41%), Gaps = 9/220 (4%) Query: 5 IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64 ++D +++ + + + D+ ++ E+ Sbjct: 2 VEDDQEIQELIKQFLMTQQYKVIVASDGLEGMKQFNKQSFDLILLDVM--MPNLNGFEVA 59 Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRLKVS 122 ++IR+ S +P+I ++ Q + FD G+DD + KP ++ RV A + + Sbjct: 60 KMIRSQSNIPIIMLTALEEEQDQMKGFDLGIDDYITKPFSFHVLMRRVEAVLRRSNNQST 119 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 +N + V D V PL +E IL+ L+ N K + + I I+G ++ Sbjct: 120 DNHFVFRELHVDGDAYKVYVNRVDVPLTTKEFEILQLLLQNEKKVLTRENIVEKIWG-YE 178 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 A + ++++H+ +RKKL + + + +GY ID Sbjct: 179 YAGDTRMIDTHMKNIRKKLDIP----YIKTVKGIGYKIDE 214 >gi|156936433|ref|YP_001440349.1| osmolarity response regulator [Cronobacter sakazakii ATCC BAA-894] gi|156534687|gb|ABU79513.1| hypothetical protein ESA_04334 [Cronobacter sakazakii ATCC BAA-894] Length = 252 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 38/229 (16%), Positives = 90/229 (39%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ + G + + E + L + + ++ L GE L Sbjct: 20 ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLML--PGEDGL 77 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112 + R +R+ S +P+I ++ + + G DD + KP + RE + + Sbjct: 78 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 137 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + G ++ R+ + E PL E +L+ L+++ + +++ + Sbjct: 138 NELPGAPSQEEAIIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDK 197 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLRNKLG-FDPVDSKRFLGYSI 220 + + G + + E ++ IS+LR+ + + + LGY Sbjct: 198 LMNLARGR-EYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVF 245 >gi|150388130|ref|YP_001318179.1| two component transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149947992|gb|ABR46520.1| two component transcriptional regulator, winged helix family [Alkaliphilus metalliredigens QYMF] Length = 216 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 42/221 (19%), Positives = 88/221 (39%), Gaps = 8/221 (3%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + ++I+D +++ G E ++ + D+ ++ L + Sbjct: 3 VILIIEDEDPIRELIKLNLVMAGYETLEACDGEEGLQYLNNEKIDLVLLDVML--PQQDG 60 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L I +P I ++ L+ + + G DD V KP E+LARV + RR Sbjct: 61 YTLLPKILK-KNIPTIMLTAKDRLKDKVKGLEMGADDYVTKPFEAMELLARVKCVLRRSD 119 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 + I + D G+ L +E +L L+ N+G +++ ++ ++G Sbjct: 120 KEKTKIVMDDIEICLDQWKVLKDGKEVDLTYKEFDLLRLLIENKGNVMSRDRLLELVWG- 178 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 ++ V+ HI +LR K+ + + +GY ++ Sbjct: 179 YEFEGNTRTVDMHIQRLRNKIGADK----IKTIYKVGYRME 215 >gi|49480164|ref|YP_034830.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49331720|gb|AAT62366.1| probable response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 223 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 51/222 (22%), Positives = 98/222 (44%), Gaps = 7/222 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A + + + + D+ ++ + E +L D ++ Sbjct: 3 LLVVEDNASLLESIVQILRDE-FEVDTALNGEEGLFLALQNIYDAILLDVM--MPEMDGF 59 Query: 62 ELPRIIR-AHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRR 118 E+ + IR + P++ ++ SL+ + D G DD + KP E+ AR+ A Sbjct: 60 EVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSG 119 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + I +F +D +V G+ L ++ +LEYL+ N GK + + QIF ++ Sbjct: 120 SLTTKQTIRYKGIELFGKDKDVQVDGQSMKLTLKQYELLEYLVQNSGKILMREQIFDRVW 179 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G FD +VE ++ LRKKL + + R +GY + Sbjct: 180 G-FDSDTTVAIVEVYVHHLRKKLEPFGYQKDIQTVRGIGYIL 220 >gi|330827879|ref|YP_004390831.1| winged helix family two component transcriptional regulator [Aeromonas veronii B565] gi|328803015|gb|AEB48214.1| Two component transcriptional regulator, winged helix family [Aeromonas veronii B565] Length = 240 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 44/228 (19%), Positives = 94/228 (41%), Gaps = 13/228 (5%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD ++ + G + G + E + L + + ++ L GE L Sbjct: 9 LVVDDDLKLRSLLERYLTEQGFVVRGVANGEQADRLLTRENFSLMVLDLML--PGEDGLS 66 Query: 63 LPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R +R P++ ++ + + G DD + KP + RE+LAR+ A+ RR V Sbjct: 67 ICRRLREAGNQIPVLMLTAKGDEVDRIVGLEMGADDYLPKPFNPRELLARIRAVLRRHTV 126 Query: 122 S--------NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 G ++ R+ GE L E +L+ L+++ + +++ ++ Sbjct: 127 ELPGAPSAAEKVVNFGAFQLNLATRELSRDGEPMALTSGEFAVLKVLVSHPREPLSRDKL 186 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + G + E ++ +S+LR+ L + + + LGY Sbjct: 187 MNLARGR-EYTATERSIDVQVSRLRRLLEQDPAQPRYLQTVWGLGYVF 233 >gi|325838529|ref|ZP_08166551.1| putative transcriptional regulatory protein CssR [Turicibacter sp. HGF1] gi|325490824|gb|EGC93126.1| putative transcriptional regulatory protein CssR [Turicibacter sp. HGF1] Length = 230 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 49/226 (21%), Positives = 93/226 (41%), Gaps = 8/226 (3%) Query: 4 LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLEL 63 +IDD A ++ + +G + F + E + + D ++ + G L+L Sbjct: 6 VIDDDANIRQLILRYLEKEGYKVTAFENAEHVFEAFNMLQPDALVLDIMMPG-TMDGLDL 64 Query: 64 PRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR------EILARVAAIYR 117 + IR SQVP+I +S + + G DD ++KP R +I+ R Sbjct: 65 CKKIRTVSQVPIIFVSAKDEAVDRIIGLELGADDYLSKPFSPRELLVRLKIIFRRIEPVM 124 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 + +++ R V+ + L E +L YL+ N+ + + I Sbjct: 125 VSDHETTTYQIKDLKIDDSKRVCSVKDKELSLTNNEYMLLAYLVKNKNISFTRENLIQNI 184 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDWN 223 +G +D E +++ + +LRKKL++ + + GY ID N Sbjct: 185 WG-YDYVGESRMIDDLVKRLRKKLKSFDAQVEITTVWGYGYRIDDN 229 >gi|311278058|ref|YP_003940289.1| two component transcriptional regulator, winged helix family [Enterobacter cloacae SCF1] gi|308747253|gb|ADO47005.1| two component transcriptional regulator, winged helix family [Enterobacter cloacae SCF1] Length = 219 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 60/221 (27%), Positives = 102/221 (46%), Gaps = 9/221 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D L+ DG A G +L+ F E + +A D ++ L G L Sbjct: 3 ILLVEDDKLIGDGLRAGLVKMGFTLDWFTRGEEGKAALLAAPYDAVILDLTL--PGIDGL 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119 ++ R RA + P++ ++ +L ++ G DD + KP E+ AR+ A I R Sbjct: 61 DILRAWRAQGRQEPVLILTARDALAQRVEGLRLGADDYLCKPFALIEVAARLEALIRRAH 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + N + G + + D G PL +E +LE LM N G+ + + I +Y Sbjct: 121 GQATNALQHGKVTLNPDSLTATFDGAPLPLKPKEFALLELLMRNAGRVLPRKLIEEKLYS 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D+ V N VE H+ LR+KL G D + + +GY++ Sbjct: 181 -WDDDVSSNAVEVHVHHLRRKL----GSDFIRTVHGIGYTL 216 >gi|118479956|ref|YP_897107.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|118419181|gb|ABK87600.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] Length = 249 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 42/226 (18%), Positives = 91/226 (40%), Gaps = 9/226 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G + + ++ + + ++ L Sbjct: 22 ILIVEDDPNISSLLQSHIQKYGYEAVVAENFDDIMESFNAVKPHLVLLDVNL--PKFDGF 79 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 R IR S P+I IS + +SG DD + KP H+ ++A++ RR+ Sbjct: 80 YWCRQIRHESTCPIIFISARAGEMEQIMAIESGADDYITKPFHYDVVMAKIKGQLRRIYG 139 Query: 122 SNNRAETGPIRV------FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 + I F + + E L ++E + E L++ + ++ + + Sbjct: 140 DYAPNISERIVEVEGLKLFPERPEIHFGSEQVLLTKKEAILAEMLLSKFPRTASREDLLA 199 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 A++ + VEEN + +I++LRKK + +++ R LGY + Sbjct: 200 ALWD-DESFVEENTLNVNITRLRKKFNELGIENAIETVRGLGYRFN 244 >gi|29655289|ref|NP_820981.1| transcriptional regulatory protein [Coxiella burnetii RSA 493] gi|161829818|ref|YP_001595970.1| transcriptional regulatory protein [Coxiella burnetii RSA 331] gi|29542561|gb|AAO91495.1| two-component response regulator [Coxiella burnetii RSA 493] gi|161761685|gb|ABX77327.1| transcriptional regulatory protein [Coxiella burnetii RSA 331] Length = 245 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 41/232 (17%), Positives = 86/232 (37%), Gaps = 16/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + ++D G + + D+ ++ G+ L Sbjct: 7 ILIVDDDSDIRDLLGKFLRRHGFEASLAKDGSEMQAILLKQAVDLVILDIM--MPGDDGL 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R +RA+S +P++ ++ + + G DD ++KP + RE+LARV AI RR + Sbjct: 65 TLCRQMRANSTIPILMLTAISEEVDRILGLEMGADDYLSKPFNPRELLARVRAILRRSQG 124 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFP------------LPRRERRILEYLMANRGKRVA 169 + L E +L L+ + ++ Sbjct: 125 GGGSLNGIGTNERVIYEFAGWSLDPAERRLKSPDSLEITLSSGEFDLLHALVQRSQQVLS 184 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + ++ + + + ++ IS+LR KL + + + R GY + Sbjct: 185 RDKLLD-LTKNREAGPFDRSIDIQISRLRHKLEQDPKNPQIIKTIRGGGYVL 235 >gi|261366093|ref|ZP_05978976.1| transcriptional activator protein Irlr [Subdoligranulum variabile DSM 15176] gi|282572094|gb|EFB77629.1| transcriptional activator protein Irlr [Subdoligranulum variabile DSM 15176] Length = 224 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 49/221 (22%), Positives = 93/221 (42%), Gaps = 5/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D+ + + S++ + + D ++ L G L Sbjct: 3 ILVVEDQPEMNALLVKQLKAAQYSVDSCLTGTDALDYLAGGEYDAVILDIML--PGVDGL 60 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R RA P++ ++ + + DSG DD + KP +E+LAR+ + RR Sbjct: 61 EVLRRRRAAGDKTPVLLLTARDGIDDRVRGLDSGADDYLVKPFALQELLARLRVLIRRRA 120 Query: 121 VSNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + T +V R G+ L +E +LEYL N G +++ +I ++ Sbjct: 121 DQVSDVITVADLQVDCIARTASRGGQGIALSAKEFAVLEYLARNAGVVLSRERISQGVW- 179 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D NVV+ +I LRKK+ + + R +GY + Sbjct: 180 NYDYEGGSNVVDVYIRYLRKKIDEGRQPKLIHTVRSVGYVL 220 >gi|170761512|ref|YP_001787695.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] gi|169408501|gb|ACA56912.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] Length = 226 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 40/223 (17%), Positives = 86/223 (38%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + +G + ++ + D+ ++ L L Sbjct: 4 ILIVEDEEKLSRFIELELKHEGYEIVKADNGRTGLEIAEKGEIDLILLDIML--PEINGL 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHR----EILARVAAIYR 117 E+ R +R S +P+I ++ ++ + D+G DD + KP I + Sbjct: 62 EVLRRLRRTSDIPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKKRIV 121 Query: 118 RLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAI 177 +K + G + + L RE +L+ LM N+ + ++ + + Sbjct: 122 TVKKDEDIIRCGLLSLDKIRHKVMYDSTEIELTNREFNLLQILMENKNIVLTRSILMEKV 181 Query: 178 YGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 G +D E NV++ +I LR K+ + + + R +GY I Sbjct: 182 CG-YDYLGETNVIDVYIRFLRTKIDDAFKVKIITTVRGVGYVI 223 >gi|146305399|ref|YP_001185864.1| osmolarity response regulator [Pseudomonas mendocina ymp] gi|145573600|gb|ABP83132.1| Two-component response regulator OmpR [Pseudomonas mendocina ymp] Length = 245 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 39/229 (17%), Positives = 94/229 (41%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD A ++ F + G + ++E + L + ++ ++ L GE L Sbjct: 14 ILIVDDDARLRRLLERFFDEQGYRVRAVENVEQMDRLLARELFNLVVLDLML--PGEDGL 71 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE--------ILARV 112 R +R ++Q+P+I ++ + + + G DD + KP + RE + +V Sbjct: 72 SACRRLRESNNQIPIIMLTAKGDESSRIQGLELGADDYLAKPFNPRELLARIKAVLRRQV 131 Query: 113 AAIYRRLKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 + + G + R+ + +V L E +L+ L+ + + + + + Sbjct: 132 PVVPGAPGTEDESVSFGEYELSLATRELKKGDQVHMLTTGEFAVLKALVQHAREPLTRDK 191 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + + G + E ++ IS+LR+ + + + + +GY Sbjct: 192 LMNLARGR-EWDALERSIDVQISRLRRLIEPDPSKPRYIQTVWGVGYVF 239 >gi|145589778|ref|YP_001156375.1| two component transcriptional regulator [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145048184|gb|ABP34811.1| two component transcriptional regulator, winged helix family [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 237 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 45/227 (19%), Positives = 89/227 (39%), Gaps = 9/227 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEKV 60 ++++D + + G +E + + ++ ++ L G G + Sbjct: 5 ILIVEDEPSIAELIAINLTHAGYKVEKAMQTDIASAMMKDQLPNMIILDWMLPGKSGVQF 64 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R +P++ ++ + DSG DD V KP +E++ARV A+ RR Sbjct: 65 AKELRSNERTKALPILMLTAKSEESDKVLGLDSGADDYVTKPFSPKELVARVRAMLRRQM 124 Query: 121 VSNNRAE-------TGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + P P + + L E R+L++ MAN + ++ + Sbjct: 125 PIEDTGPLTVGPLKLDPSSHRVLATWPNAESKAIALGPTEFRLLQFFMANPERVHSRASL 184 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++G + +EE V+ HI +LR L +++ R GY I Sbjct: 185 LDKVWG-SEVYIEERTVDVHIKRLRAALVPFDCDRYIETVRGSGYRI 230 >gi|87198466|ref|YP_495723.1| two component transcriptional regulator [Novosphingobium aromaticivorans DSM 12444] gi|87134147|gb|ABD24889.1| two component transcriptional regulator, winged helix family [Novosphingobium aromaticivorans DSM 12444] Length = 245 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 40/227 (17%), Positives = 88/227 (38%), Gaps = 11/227 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L+DD +++ G + + D+ ++ GE L Sbjct: 8 ILLVDDEPALREPLADYLVRQGFVVTQAGTAAEARSRLLETGCDLVLLDIM--MPGEDGL 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R + ++P+I I+ + + G DD V KP RE++AR+ ++ RR Sbjct: 66 SLCRHLVESKRLPVIFITAKGESTDRIVGLEIGADDYVVKPFDPRELVARIRSVLRRATK 125 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFP-------LPRRERRILEYLMANRGKRVAKTQIF 174 ++ I F R ++ + + E R+L + + + + + ++ Sbjct: 126 QSSEVSDEVIYEFEGWRLDPLKRRLIDAEGAVVAISSAEFRLLMAFLDHPRQVLDRDRLL 185 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + G + V++ IS+LR+K+ + + + + GY + Sbjct: 186 DMVQGREAHLFD-RAVDNQISRLRRKIEVDSRNPELIQTVWGGGYML 231 >gi|154244586|ref|YP_001415544.1| two component transcriptional regulator [Xanthobacter autotrophicus Py2] gi|154158671|gb|ABS65887.1| two component transcriptional regulator, winged helix family [Xanthobacter autotrophicus Py2] Length = 255 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 41/238 (17%), Positives = 85/238 (35%), Gaps = 22/238 (9%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ G + S + L ++ D+ ++ GE L Sbjct: 14 IIVVDDEEALRETVAEYLAGQGFRVRSAASGRDLDTLLAAEPADLILMDVH--MPGEDGL 71 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R IR+ + P+I ++ + + + G DD V KP RE+ AR+ A+ RR Sbjct: 72 TLARRIRSAAATPIIMLTAADDIVDRVAGLEVGADDYVVKPFDLRELKARIRAVLRRYTA 131 Query: 122 SNNR------------------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMAN 163 G L E +L + N Sbjct: 132 VPPPTHEPPPANGAVPAGADLVPCGVVFLDMEAHCLVRRDGTREMLTAMEFDLLRVFLQN 191 Query: 164 RGKRVAKTQIFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + + + ++ + +E + ++ +++LRKK+ + + + R +GY Sbjct: 192 PNRVLTRDRLLDLAHDRDNEPFD-RSIDVRVTRLRKKIEADPAKPQAIKTVRGVGYLF 248 >gi|152966752|ref|YP_001362536.1| two component transcriptional regulator, winged helix family [Kineococcus radiotolerans SRS30216] gi|151361269|gb|ABS04272.1| two component transcriptional regulator, winged helix family [Kineococcus radiotolerans SRS30216] Length = 220 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 48/221 (21%), Positives = 92/221 (41%), Gaps = 9/221 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ +D + +G + L + D+ ++ L Sbjct: 4 ILIAEDETRIAAFVEKGLRANGYATTIATDGRTAHDLAGTGLFDLLILDIGL--PVVDGF 61 Query: 62 ELPRIIRAHSQV-PLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + R +RA P+I ++ ++ T+ D G DD V KP E+LAR+ R + Sbjct: 62 TVLRRLRAERHALPVIILTARDAVADTVAGLDGGADDYVTKPFRFEELLARIRLRLRDDR 121 Query: 121 VSNNRA-ETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + G +++ R V G L RE + E + + G+ +++ Q+ S+++G Sbjct: 122 AAEVTVLAAGELQLDLLSRTAAVAGRSVALSSREFSLAEAFLRHPGQVLSREQLLSSVWG 181 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 +D NVV+ ++ LRKKL G ++ R +GY + Sbjct: 182 -YDFDPGSNVVDVYVRYLRKKL----GAGRFETIRGMGYRL 217 >gi|22538189|ref|NP_689040.1| DNA-binding response regulator [Streptococcus agalactiae 2603V/R] gi|25012047|ref|NP_736442.1| DNA-binding response regulator [Streptococcus agalactiae NEM316] gi|76797838|ref|ZP_00780102.1| putative two-component response regulator [Streptococcus agalactiae 18RS21] gi|77412950|ref|ZP_00789153.1| DNA-binding response regulator [Streptococcus agalactiae 515] gi|22535099|gb|AAN00913.1|AE014284_8 DNA-binding response regulator [Streptococcus agalactiae 2603V/R] gi|24413590|emb|CAD47668.1| gbs2009 [Streptococcus agalactiae NEM316] gi|76586798|gb|EAO63292.1| putative two-component response regulator [Streptococcus agalactiae 18RS21] gi|77160962|gb|EAO72070.1| DNA-binding response regulator [Streptococcus agalactiae 515] Length = 228 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 42/224 (18%), Positives = 89/224 (39%), Gaps = 8/224 (3%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + DD ++D + DG ++ F + + + + D+ ++ G Sbjct: 4 IIYFADDEKNIRDLVVPFLEHDGFTVRAFETGDLLLEAYKNQKPDLVILDIM--MPGTNG 61 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L++ + IR + +P+I ++ S + F+ G DD KP ++ V A+++RL Sbjct: 62 LDVMKSIRQYDNIPIIMLTARDSDVDFITAFNLGTDDYFTKPFSPIKLSLHVKALFKRLD 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQ----GEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + +T + + E PL + E L L+ ++ + + Sbjct: 122 EKAIKNDTQYQFLDLTLDTEKRIALLSNEEMPLTKTEFDFLLVLIEKPETAFSRETLLNR 181 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 I+G D +E V+ I +LRKK + + + G+ + Sbjct: 182 IWGFDD--IESRAVDDTIKRLRKKFKQYHSQVSIKTVWGYGFKL 223 >gi|317488673|ref|ZP_07947213.1| response regulator receiver domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|325831617|ref|ZP_08164834.1| putative transcriptional regulatory protein ResD [Eggerthella sp. HGA1] gi|316912232|gb|EFV33801.1| response regulator receiver domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|325486488|gb|EGC88937.1| putative transcriptional regulatory protein ResD [Eggerthella sp. HGA1] Length = 237 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 47/232 (20%), Positives = 84/232 (36%), Gaps = 14/232 (6%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D A + + +G S A D+ ++ L G L Sbjct: 6 ILVVEDDADINALLAKIAAREGFGCVQAYSGTEALLQMERAAFDLVLLDMMLPGMDGPTL 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 S+VP+I +S + +G DD V KP E+ AR+ A+ RR Sbjct: 66 MACMRDELASRVPVIVVSAKAGSADKVGMLAAGADDYVTKPFDPDEVAARIHAVLRRAAG 125 Query: 122 SNNRAETGPIRVFSDGRDPEV------------QGEVFPLPRRERRILEYLMANRGKRVA 169 ++ A G + + L E IL LM + K + Sbjct: 126 ASAAAGAGGVCPDDEALVHRDLRLDVARRRVTLGDAEVALTAHEFDILHVLMRSPDKVFS 185 Query: 170 KTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGF-DPVDSKRFLGYSI 220 + ++ ++ E+N V H+S +RKKL G D + + +G+ + Sbjct: 186 RELLYELVW-KNGYYGEQNAVNVHVSNIRKKLAAAGGAGDYIKTVWGIGFKL 236 >gi|304393600|ref|ZP_07375528.1| transcriptional activator protein CopR [Ahrensia sp. R2A130] gi|303294607|gb|EFL88979.1| transcriptional activator protein CopR [Ahrensia sp. R2A130] Length = 228 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 47/223 (21%), Positives = 90/223 (40%), Gaps = 6/223 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L +D +V G + E E S+A DV ++ L Sbjct: 5 ILLAEDDTIVAHQLTLTLETAGHEVTHVGDGEQGEARASAAEFDVLIVDRM--MPKRDGL 62 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREI--LARVAAIYRR 118 + +R+ P++ +S + + +G DD + KP E+ A Sbjct: 63 TMVSNLRSQGVNTPVLILSALGQVDDRVAGLRAGGDDYLTKPYAQTELLARVEALARRST 122 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 ++ + + G + + R E GE L RE R+L+YLM + G+ V +T + ++ Sbjct: 123 VQATETSSSVGDLSLDRLSRKAERSGEEIILQPREYRLLDYLMRHSGQLVTRTMLLENVW 182 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + NV++ H+S+LR K+ + + R GY ++ Sbjct: 183 -ELNFDPQTNVIDVHVSRLRSKIDKGFDKPLLHTVRGKGYRLE 224 >gi|295093801|emb|CBK82892.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Coprococcus sp. ART55/1] Length = 224 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 38/221 (17%), Positives = 78/221 (35%), Gaps = 7/221 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD + F G ++ + + + D+ ++ Sbjct: 5 ILIVDDEKEIVSMLYCYFSKLGYTVYTATAGNAALK-EVEKKPDIILLDVN--MPDIDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118 + IR + P+I ++ + F G DD V KP E +A +R Sbjct: 62 TVCERIRDYVSCPIIFLTARIEDSDKIKGFSIGADDYVIKPFSVDELEARIAAHLRREKR 121 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 S+ + + R + ++E I+ +L N+G + I+ ++ Sbjct: 122 HNTSSKVQFDEDMVIDYSSRIVFYHNKDMAFTKKEFDIISFLSQNKGIVFDRETIYEKVW 181 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 GL D + VV HI ++R K + +++ GY Sbjct: 182 GL-DGIGDNTVVTEHIRRIRAKFLSLGDRPYIETVWGCGYK 221 >gi|228951142|ref|ZP_04113258.1| Two-component response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228808552|gb|EEM55055.1| Two-component response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 225 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 43/220 (19%), Positives = 76/220 (34%), Gaps = 6/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L+DD + + G + S E + ++ Sbjct: 4 ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIM--MPKMDGW 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E + IR+ S +P+I ++ + G DD V KP H E+ R Sbjct: 62 ETCKKIRSFSNIPIIMVTARDQTVDVVQGLKLGADDYVTKPFHEEEL-FARIEAVLRRTN 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + + I V E L E +L + + +++ Q+ I+GL Sbjct: 121 EHKQIQYHGIVWDETKHFVSVHNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGL- 179 Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219 + E+ V+SHI LR KLR + + +GY Sbjct: 180 NTNTEDRTVDSHIRNLRDKLRKANFPIDHHLKTVYGVGYR 219 >gi|228953050|ref|ZP_04115111.1| Two-component response regulator vanRB [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229079910|ref|ZP_04212442.1| Two-component response regulator vanRB [Bacillus cereus Rock4-2] gi|228703494|gb|EEL55948.1| Two-component response regulator vanRB [Bacillus cereus Rock4-2] gi|228806668|gb|EEM53226.1| Two-component response regulator vanRB [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 214 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 47/220 (21%), Positives = 89/220 (40%), Gaps = 9/220 (4%) Query: 5 IDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLELP 64 ++D +++ ++ + + D+ ++ E+ Sbjct: 2 VEDDQEIQELIKQFLMTQHYTVIVASDGLEGMTQFNKQSFDLILLDVM--MPNLNGFEVS 59 Query: 65 RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA--IYRRLKVS 122 ++IR+ S VP+I ++ + + FD G+DD + KP ++ RV A K Sbjct: 60 KMIRSQSNVPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRSYDKNV 119 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 NN +R+ D V L +E IL+ L N K + + I ++G +D Sbjct: 120 NNHLIFKEVRIDVDAYRVYVNDVEIILTTKEFEILQLLFQNERKVLTRENIVEKVWG-YD 178 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 E ++++HI LRKKL + + + +GY ID Sbjct: 179 YFGETRIIDTHIKNLRKKL----AIPYIKTIKGIGYKIDE 214 >gi|110644669|ref|YP_672399.1| DNA-binding response regulator [Escherichia coli 536] gi|23954247|emb|CAD42044.1| hypothetical protein [Escherichia coli] gi|110346261|gb|ABG72498.1| DNA-binding response regulator [Escherichia coli 536] Length = 239 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 88/228 (38%), Gaps = 12/228 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D + D+G + L D ++ L L Sbjct: 7 ILLMEDDYDIAALLRLNLQDEGYQIVHEADGARARLLLDKQTWDAVILDLML--PNVNGL 64 Query: 62 ELPRIIRAH-SQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ R IR S +P+I IS S + + G DD + KP E++AR+ A++RR + Sbjct: 65 EICRYIRQMTSYLPVIIISARTSETHRVLGLEMGADDYLPKPFSIPELIARIKALFRRQE 124 Query: 121 VSNNR-------AETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + + R+ + + L RE +L + + G+ ++ + Sbjct: 125 AMGQNILLASGLICCHGLCINPFSREVHLHNKQVDLTPREFDLLLWFARHPGEVFSRLSL 184 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 ++G + E+ V +HI++LR K+ + + + GY Sbjct: 185 LDNVWG-YQHEGYEHTVNTHINRLRAKIEQDAAEPKMIQTVWGKGYRF 231 >gi|49081810|gb|AAT50305.1| PA4885 [synthetic construct] Length = 230 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 49/222 (22%), Positives = 96/222 (43%), Gaps = 4/222 (1%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + G+ G +++ +L R D+ ++ L G Sbjct: 3 ILVIEDDTKTGEYLKKGLGESGYAVDWSQHGADGLYLALENRYDLVILDVML--PGLDGW 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ ++R VP++ ++ LQ + + G DD + KP E+L R+ + RR V Sbjct: 61 QIMEVLRKKHDVPVLFLTARDQLQDRIRGLELGADDYLVKPFSFTELLLRIRTLLRRGVV 120 Query: 122 SNNRAETGPI-RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 ++ R QG+V L +E +L LM G+ +++T I S ++ + Sbjct: 121 REAEQVQLADLQLDVLRRKVSRQGQVIALTNKEFALLHLLMRREGEVLSRTLIASEVWDM 180 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + + NVV+ I +LR K+ N + + R +GY + Sbjct: 181 -NFDSDTNVVDVAIKRLRAKVDNPFPNKLIHTVRGIGYVCEE 221 >gi|71906069|ref|YP_283656.1| response regulator receiver:transcriptional regulatory protein, C-terminal [Dechloromonas aromatica RCB] gi|71845690|gb|AAZ45186.1| Response regulator receiver:Transcriptional regulatory protein, C-terminal [Dechloromonas aromatica RCB] Length = 223 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 56/221 (25%), Positives = 107/221 (48%), Gaps = 6/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ +D A++ DG G +++ + + + D+ ++ L L Sbjct: 3 ILIAEDDAIIADGLSRSLRQGGYAVDWAPNGMEADTALVTVSYDLLILDLGL--PKLSGL 60 Query: 62 ELPRIIRA-HSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 E+ + +RA +SQ+P++ ++ + D G DD + KP E+ ARV A+ RR Sbjct: 61 EVLKRLRARNSQLPVLILTALDGTGDRVKGLDLGADDYMVKPFELPELEARVRALTRRSA 120 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 ++ + G + GR ++QG+ L RE +LE L++ G+ V+K Q+ + G Sbjct: 121 GTSPTIQCGALTYDQVGRVAQIQGQTLELSAREVGLLEVLLSRMGRLVSKDQLVDHLCG- 179 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + E V N +E ++ +LRKK+ G + + R LGY ++ Sbjct: 180 WGEEVSHNAIEVYVHRLRKKIE--PGGVKIATVRGLGYCLE 218 >gi|172058889|ref|YP_001815349.1| two component transcriptional regulator [Exiguobacterium sibiricum 255-15] gi|171991410|gb|ACB62332.1| two component transcriptional regulator, winged helix family [Exiguobacterium sibiricum 255-15] Length = 230 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 32/225 (14%), Positives = 83/225 (36%), Gaps = 10/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ +D ++ + G + + D+ ++ Sbjct: 4 ILVAEDEHAIRSFIVINLKRAGYEVIEAENGREALDYFEQQTFDILLLDIM--MPEVDGF 61 Query: 62 ELP-RIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 + + V +I ++ + + G DD + KP E+LAR+ ++ RR++ Sbjct: 62 AVCEQARSKDEVVGIIMLTARTREEDKVMGLSVGADDYIAKPFSPAELLARIQSLLRRVE 121 Query: 121 VSNNRAETG-----PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFS 175 R + P R+ + + G + E +L + + N + +++ ++ Sbjct: 122 TLRRRKQPRELVSGPFRIDLGAKRVQKAGVDVEVTPTEYDLLCHFIKNEDQVMSRDELLD 181 Query: 176 AIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYS 219 A++G + + V+ +I +LR+K+ +++ GY Sbjct: 182 AVWGE-NYFGDRKTVDVNIRRLRQKIEENPAEPQFIETLWGHGYK 225 >gi|330821252|ref|YP_004350114.1| two component transcriptional regulator [Burkholderia gladioli BSR3] gi|327373247|gb|AEA64602.1| two component transcriptional regulator [Burkholderia gladioli BSR3] Length = 266 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 50/234 (21%), Positives = 95/234 (40%), Gaps = 17/234 (7%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + DG + + + ++ L G+G L Sbjct: 10 ILIVEDEPKLSALLADYLHADGYATAIVADGREVVPHVRAHAPSLVLLDLMLPGRG--GL 67 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ R +R S +P+I ++ L + G DD V KP RE++ARV AI RR++ Sbjct: 68 DICRELRGFSTIPVIILTARVDEIDRLLGLELGADDYVCKPFSPREVVARVKAILRRIEQ 127 Query: 122 SNNRAETGPIR-------------VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 + + + + + + G L E R+L L+AN G+ Sbjct: 128 AERKGKGEAGHEANAADGGAAPFEIDPEHHVARLDGRNLHLTPVELRLLALLVANPGRIY 187 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSID 221 ++ + +Y V + V+SH+ LR+KL+ + D + S +GY + Sbjct: 188 SRDFLLRRLYDDH-RVVTDRTVDSHVKNLRRKLQAVRPERDFIRSIYGVGYQFE 240 >gi|325262690|ref|ZP_08129426.1| DNA-binding response regulator [Clostridium sp. D5] gi|324031784|gb|EGB93063.1| DNA-binding response regulator [Clostridium sp. D5] Length = 227 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 34/220 (15%), Positives = 85/220 (38%), Gaps = 5/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++ G +E + + + + ++ ++ L Sbjct: 4 ILVVEDDRILNMTLTYNLKSAGYEVESVTNAADAKAIIEKKKYELVVLDVNL--PDGNGY 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ R ++A +I ++ L ++ G DD V KP +VAAI R++ Sbjct: 62 EICRAVKAKQDAAIIFVTAQDMESDMLKGYECGADDYVTKPFSVAVFQKKVAAILSRIEK 121 Query: 122 SNNRAETGPIR--VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + + V L +E ++L+ ++ + + + + ++ Sbjct: 122 KSVSDVFEDGYLAIDFGENSCTAGQAVVALTPKEWKLLKIFAKSKKQVLTRQILLDRLWD 181 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYS 219 + V+++ + + +S LRKK+ NK + + +GY Sbjct: 182 IDGNFVDDHTLTTTLSALRKKIENK-EHSYIQTIYGMGYM 220 >gi|307243687|ref|ZP_07525827.1| response regulator receiver domain protein [Peptostreptococcus stomatis DSM 17678] gi|306492896|gb|EFM64909.1| response regulator receiver domain protein [Peptostreptococcus stomatis DSM 17678] Length = 217 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 44/220 (20%), Positives = 101/220 (45%), Gaps = 7/220 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D ++++G + G ++ + + D++ + L Sbjct: 3 ILVVEDDQMIREGISEYLSEFGYTIIQAKDGKEALSKFDN---DINLAILDIQIPFVNGL 59 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E+ + IR S++P++ ++ + + +D F + D + KP + ARV ++ ++ Sbjct: 60 EVLKEIRKTSKLPILILTAFSDEEYKIDAFTNLADGYIEKPFSLPVLKARVDSLIKKNFG 119 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + E I V ++ GE + +E IL+YL+ N G+ + + QI ++ Sbjct: 120 RIEKFEYKNIEVNFTSYTAKINGESIDINAKELEILKYLLDNEGQALTRMQIIDNVWKET 179 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 +E + V++ +I +LRKKL D + + R +GY ++ Sbjct: 180 EEIPFDRVIDVYIKELRKKLEL----DCIVTIRNVGYKLE 215 >gi|227506355|ref|ZP_03936404.1| response regulator [Corynebacterium striatum ATCC 6940] gi|227197006|gb|EEI77054.1| response regulator [Corynebacterium striatum ATCC 6940] Length = 234 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 50/224 (22%), Positives = 91/224 (40%), Gaps = 10/224 (4%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 +++DD + + G + NS + D ++ G E Sbjct: 10 LVVDDEPNIVELLTVSLKFQGFEVFSANSGTEALRVAREVNPDAYIMDVM--MPGMDGFE 67 Query: 63 LPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L +R P++ ++ S+ + G DD V KP E++ R+ I RR Sbjct: 68 LLGKLRQEGLDGPVLYLTAKDSVDQRIHGLTIGADDYVTKPFSLEEVITRLRVILRRGAN 127 Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 ++ I D + GE+ L E +L YLM N+ ++K++I Sbjct: 128 VDDVNNDATISYADLTLNDDTHEVTKGGEIVELSPTEFNLLRYLMQNKEVVLSKSKILDN 187 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ +D + NVVES+IS LR+K+ + + + R +GY + Sbjct: 188 VW-HYDFGGDGNVVESYISYLRRKI-DTGDTQLIHTVRGVGYVL 229 >gi|123443239|ref|YP_001007213.1| transcriptional activator [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122090200|emb|CAL13063.1| transcriptional activator [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 229 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 41/224 (18%), Positives = 81/224 (36%), Gaps = 6/224 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D G+ G S++ D ++ L G Sbjct: 3 LLLVEDEEKTSSYLSRALGESGFSVDISADGAEGLHYALEYDYDAIILDVML--PGMDGY 60 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHRE---ILARVAAIYRR 118 + IRA Q P++ +S S+ + G DD + KP E + + Sbjct: 61 RVLEGIRASKQTPMLMLSARGSVDERVKGLRLGADDYLPKPFSLIELVARIQALVRRRST 120 Query: 119 LKVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIY 178 + + + + R G L +E +L L ++G+ ++K I ++ Sbjct: 121 DGADITQLQIHDLHLDLLARRVFRTGTRLELTAKEFSLLSLLARHQGEILSKMMIAEQVW 180 Query: 179 GLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 + + + NVVE I +LR K+ + + R +GY ++ Sbjct: 181 DM-NFDSDANVVEVAIKRLRAKIDAPFEVKLLHTVRGMGYVLEV 223 >gi|118617161|ref|YP_905493.1| two component regulator receiver domain-containing protein [Mycobacterium ulcerans Agy99] gi|118569271|gb|ABL04022.1| two component regulator - receiver domain [Mycobacterium ulcerans Agy99] Length = 247 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 56/218 (25%), Positives = 99/218 (45%), Gaps = 5/218 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D +++ D G + + E E + R D+ ++ L G Sbjct: 30 LVVEDSETIREMVNEALADVGYHTDTRSDGEGLEEVLQGLRPDLVVLDVML--PGRDGFA 87 Query: 63 LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122 L +IR + ++ I+ L L D G DD KP E+++RV A+ RR Sbjct: 88 LIDVIREWGDIGIVLITARDGLPDRLRGLDGGADDYAVKPFELAELVSRVGAVLRRRGRL 147 Query: 123 NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLFD 182 + G + + S+ G L E R+L++L+ RG+ V+ TQI +A++G Sbjct: 148 PRVVQVGDLMLDSEAGVAARDGHQLDLTATELRLLDFLVQQRGRIVSATQILNAVWGYDA 207 Query: 183 EAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + N+V+ H+S LR+KL G V + R +GY + Sbjct: 208 Y--DANLVQVHVSSLRRKLEAH-GPRIVQTVRGIGYRL 242 >gi|15807407|ref|NP_296139.1| DNA-binding response regulator [Deinococcus radiodurans R1] gi|6460240|gb|AAF11967.1|AE002072_9 DNA-binding response regulator [Deinococcus radiodurans R1] Length = 373 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 41/215 (19%), Positives = 89/215 (41%), Gaps = 5/215 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++I+D + + D G ++ +S D+ ++ L Sbjct: 6 ILVIEDDHDIANVLRMDLTDAGYVVDHADSAMNGLIKAREDHPDLILLDLGL--PDFDGG 63 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 ++ + +R +S +P+I ++ +++ + G DD + KP H E+ + + Sbjct: 64 DVVQRLRKNSALPIIVLTARDTVEEKVRLLGLGADDYLIKPFHPDEL--LARVKVQLRQR 121 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 ++ G + + R +GE L +E IL L+ G+ ++ +I I+ Sbjct: 122 TSESLSMGDLTLDPQKRLVTYKGEELRLSPKEFDILALLIRQPGRVYSRQEIGQEIWQGR 181 Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFL 216 NVV+ H++ LR KLR+ G+ + + R + Sbjct: 182 LPEG-SNVVDVHMANLRAKLRDLDGYGLLRTVRGV 215 >gi|124265269|ref|YP_001019273.1| two component transcriptional regulator [Methylibium petroleiphilum PM1] gi|124258044|gb|ABM93038.1| two component transcriptional regulator, winged helix family [Methylibium petroleiphilum PM1] Length = 223 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 56/223 (25%), Positives = 104/223 (46%), Gaps = 7/223 (3%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ +D ++ DG + G +++ S + + D+ ++ L L Sbjct: 3 ILIAEDDQVLADGLLRTLRKGGYAVDQVGSGSEADAALADHEFDLVILDLGL--PKLHGL 60 Query: 62 ELPRIIRAHSQ-VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119 E+ R +RA P++ ++ S++ + D G DD + KP +E+ ARV A R L Sbjct: 61 EVLRKMRARGTVTPVLILTAADSVEQRVKGLDLGADDYMAKPFALQELEARVRALTRRGL 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++ + GP+ + GR + ++ L RE +LE L+ G+ V+K Q+ + Sbjct: 121 GTASAIIKHGPLSFDATGRVAYLNDQMIELSARELSLLEVLLQRAGRLVSKDQLVERLCE 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSIDW 222 DE V N +E +I +LRKK+ G + + R LGY ++ Sbjct: 181 WGDE-VSNNAIEVYIHRLRKKIEQ--GPVRIATVRGLGYCLEK 220 >gi|228471212|ref|ZP_04056025.1| transcriptional regulatory protein ResD [Porphyromonas uenonis 60-3] gi|228307027|gb|EEK16109.1| transcriptional regulatory protein ResD [Porphyromonas uenonis 60-3] Length = 233 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 49/226 (21%), Positives = 95/226 (42%), Gaps = 13/226 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ +G + + E + + ++ G Sbjct: 8 LLIVDDEEDLREILTFNLASEGYQVSTAANAEEALKM-PLEEYHLLILDVM--MPGMNGF 64 Query: 62 ELPRIIRAHSQ--VPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 +L +IR + P+I ++ + L F+ G DD + KP +E+ AR+ AI R Sbjct: 65 KLAELIRRDKKLTTPIIFLTAKGTENDLLTGFNIGADDYMAKPFSIKELQARIQAILMRF 124 Query: 120 KVSNNRAETGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIF 174 S I + D + V GE+ L ++E IL L + GK ++ +I Sbjct: 125 LQSGPDFGESQIEIGTLLIDLDAKQVFVHGELIELTKKELEILVLLARDPGKVFSREEIL 184 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 ++ D V E ++ HI+++RKKLR+ + ++ GY + Sbjct: 185 DRVW-REDVFVLERTIDVHITRIRKKLRSGGIK--IINRSGFGYCL 227 >gi|39997243|ref|NP_953194.1| DNA-binding response regulator [Geobacter sulfurreducens PCA] gi|39984133|gb|AAR35521.1| DNA-binding response regulator [Geobacter sulfurreducens PCA] Length = 232 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 44/225 (19%), Positives = 86/225 (38%), Gaps = 9/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D A + + +A + G+ + + + + ++ L Sbjct: 5 ILLVEDDAGIAEVALAYLENAGLKVVHVTTGRDALDNSRAESPLLVVLDLML--PDLSGE 62 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R ++ + +P++ I+ S + L F G DD V KP RE++ARV A+ +R Sbjct: 63 AVCRELKETADIPVVIITAKASEEERLAGFALGADDYVVKPFSPRELVARVQAVLKRAGK 122 Query: 122 SNNRAETGPIRV-----FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + + + +G L E ++L L A K + ++ Sbjct: 123 NADGGKRLSFNRGELVVDDRNYTVTCRGTSVKLTAVEFKVLHTLAARPQKTFTREELVDR 182 Query: 177 IYGLFDEAVEENVVESHISKLRKKLRN-KLGFDPVDSKRFLGYSI 220 G + E ++SHI +R KL + V + LGY Sbjct: 183 AMG-YQFEGYERNIDSHIKNIRHKLSDSPKAPTYVITVYGLGYRF 226 >gi|56476560|ref|YP_158149.1| two component response regulator [Aromatoleum aromaticum EbN1] gi|56312603|emb|CAI07248.1| Two component response regulator [Aromatoleum aromaticum EbN1] Length = 226 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 42/222 (18%), Positives = 91/222 (40%), Gaps = 5/222 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLI-GKGEKV 60 ++++D D + G ++ L D+ ++ L G V Sbjct: 3 ILIVEDEPKTGDYLRQGLAEAGFVVDLARDGLDGLHLALDGDYDLMVLDVMLPSLDGWGV 62 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAA-IYRRL 119 L+ R + +P++ ++ ++ + + G DD + KP E+LARV + R Sbjct: 63 LQTVRR--SGRDMPVLFLTARDQVEDRVRGLELGADDYLVKPFAFSELLARVRTLLRRGK 120 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 G + + R G L +E +LE L+ +G+ + ++ I S ++ Sbjct: 121 AKEPEVYSAGDLELDLLRRRVTRAGVKIDLTSKEFALLELLLRRQGEVLLRSLIASQVWD 180 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + + + NV+E + +LR K+ + + + R +GY ++ Sbjct: 181 M-NFDSDTNVIEVAVRRLRAKVDDPFEPKLIRTVRGMGYVLE 221 >gi|328544619|ref|YP_004304728.1| chemotaxis protein CheY [polymorphum gilvum SL003B-26A1] gi|326414361|gb|ADZ71424.1| CheY-like response regulator [Polymorphum gilvum SL003B-26A1] Length = 241 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 40/229 (17%), Positives = 83/229 (36%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD +++ +G+ S +A D+ ++ GE L Sbjct: 8 ILIVDDHRDIRETLARYLVKNGLRASVAESAAHARKALKAAVIDLVVLDVM--MPGEDGL 65 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 L R + + +P+I ++ + + G DD V KP + RE+LAR+ A+ RR Sbjct: 66 SLCRHLVDNGAIPVILLTAMAEETDRIIGLEIGADDYVTKPFNPRELLARIKAVLRRTAT 125 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVF---------PLPRRERRILEYLMANRGKRVAKTQ 172 + + PL E ++L + + + Q Sbjct: 126 VPRQRDALDGERLRFEGWLLDVPRRELEAPDGVAVPLSTGEFQLLAAFLKRPKMVLTRDQ 185 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + G V + +++ +S+LR+K+ + + + GY Sbjct: 186 LLDLTTGRAPT-VFDRSIDNQVSRLRRKIEADPKDPKLIKTVWGGGYMF 233 >gi|299069457|emb|CBJ40724.1| putative two-component response regulator transcription regulator protein [Ralstonia solanacearum CMR15] Length = 227 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 48/221 (21%), Positives = 98/221 (44%), Gaps = 6/221 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +LI+D ++G + +S E + + + ++ L G+ + Sbjct: 3 ILLIEDDQKAARLLARGLQEEGFEVAVAHSAEEADASLLATC-QLIILDWML--PGKDGI 59 Query: 62 ELPRIIRAHS-QVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 L R +R Q P++ ++ + + D+G DD + KP E+LARV A+ RR + Sbjct: 60 ALCRELRERDLQTPVLMLTARDATADRIAGLDTGADDYLTKPFVFDELLARVRALLRRAR 119 Query: 121 VSNNRAETGPIRV-FSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 ++ V + R G+ + +E ILEYLM + G+ V++ Q+ ++ Sbjct: 120 LAPAAPRVIGDLVLDPNARAVTRGGQALDVTPKEYAILEYLMRHAGQIVSRLQLAEHVWR 179 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 A++ N+++ H+ LR+K+ + + R G+ + Sbjct: 180 ADLIAID-NLIDVHMKNLRRKVDPPGQPALIHTVRGQGFRL 219 >gi|295093683|emb|CBK82774.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Coprococcus sp. ART55/1] Length = 222 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 49/221 (22%), Positives = 99/221 (44%), Gaps = 5/221 (2%) Query: 3 VLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVLE 62 ++++D + + +G +++ + + D + ++ + + + Sbjct: 4 LVVEDEKDLNSIICSKLVKEGYNVDACYDGQAALDYMEAENYDGAIMDIMI--PNKDGIT 61 Query: 63 LPRII-RAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAI-YRRLK 120 + R + A QVP++ ++ Q + D+G D + KP E++AR+ + + Sbjct: 62 VLREMRNAGIQVPVLFLTAKTETQDIVRGLDAGASDYMTKPFEFSELMARLRVMLRTQNP 121 Query: 121 VSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGL 180 V+ N G + V + R G+V L RE ILEYL NR V + QI I+ + Sbjct: 122 VNENVITCGSLVVDMNNRQAIRDGKVIDLTVREYAILEYLARNRNVVVTREQIRVNIWNI 181 Query: 181 FDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 D V NV++ +I LR+K+ + + + R +GY ++ Sbjct: 182 DD-DVNSNVIDVYIRYLRRKIDDNYEEKLIHTIRGVGYKLE 221 >gi|222106298|ref|YP_002547089.1| two component response regulator [Agrobacterium vitis S4] gi|221737477|gb|ACM38373.1| two component response regulator [Agrobacterium vitis S4] Length = 241 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 43/229 (18%), Positives = 90/229 (39%), Gaps = 13/229 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++++D + + G+ +E + + D+ ++ L GE Sbjct: 7 ILIVEDDEQIAGMVRDSLNEQGMLVEVAADGAAMDAKMRALEFDLVVLDVML--PGEDGF 64 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 + R +R +P++ ++ S + + G DD V KP RE+ AR+ + RR +V Sbjct: 65 SICRRLRGSGDIPILMLTSVSSDIDRVVGLEIGADDYVTKPFVLRELTARIKGLLRRSRV 124 Query: 122 SNNRAETGPIRVFSDGRD---------PEVQGEVFPLPRRERRILEYLMANRGKRVAKTQ 172 ++ R ++ F + + E +L N G+ + + Q Sbjct: 125 TSQRPDSLRKSFFRFDGWQVDPARRQLHDPSHARVAMTTHEFDLLLAFCQNPGRVLTREQ 184 Query: 173 IFSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSI 220 + SA + +E ++ HIS+LR+K+ + + + R GY Sbjct: 185 LLSATHAGLAGPIE-RSIDVHISRLRQKIEKDPRDPALLKTVRLGGYVF 232 >gi|261404369|ref|YP_003240610.1| winged helix family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261280832|gb|ACX62803.1| two component transcriptional regulator, winged helix family [Paenibacillus sp. Y412MC10] Length = 239 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 47/232 (20%), Positives = 93/232 (40%), Gaps = 19/232 (8%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKV 60 + ++DD +++ A +G G + E + + D+ ++ L G Sbjct: 6 LIAVVDDDLHIRNLVEAYLRKEGYRTVGLGTAEEGWDMWRTNPPDMWVLDIML--PGMDG 63 Query: 61 LELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLK 120 EL R IRA ++VP+I IS S + + G DD + KP RE++AR+ R Sbjct: 64 FELCRRIRAEAEVPIIMISAKDSEVDKILGLELGSDDYMVKPFSPRELVARIKRQLSRWY 123 Query: 121 VSNNRAETG------------PIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRV 168 N +++ + R GE + +E +L + + Sbjct: 124 KFNRAENVPRLAAASPELSNGRLQLQLEERRVFWNGEEVDMTNKEFEMLRVFAEHPNRAF 183 Query: 169 AKTQIFSAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + ++ ++++G D + V+ I +LRKK+ +++ GY + Sbjct: 184 TRDELLTSVWG-DDYFGSDRAVDHLIKRLRKKVEQLP----IEAIWGHGYRM 230 >gi|153854777|ref|ZP_01996011.1| hypothetical protein DORLON_02009 [Dorea longicatena DSM 13814] gi|149752684|gb|EDM62615.1| hypothetical protein DORLON_02009 [Dorea longicatena DSM 13814] Length = 231 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 50/230 (21%), Positives = 86/230 (37%), Gaps = 12/230 (5%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 ++ DD + + +G + E L + D+ I+ + Sbjct: 4 ILVCDDDKEIVEAIEIYLSQEGYKVLKAYDGEEALKLLDKHKVDLLIIDVM--MPRLDGI 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 IR +P+I +S + + G DD + KP + E+ ARV + RR Sbjct: 62 RATLKIREKQNMPIIILSAKSEDADKILGLNVGADDYMTKPFNPLELTARVKSQLRRYTQ 121 Query: 122 SNNRAETGPI--------RVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQI 173 + E + D ++ V GE L E IL L+ N+GK + QI Sbjct: 122 LGSTVEKENQAVYTVGGLMIDDDQKEITVDGEPVKLTPIEYNILLLLVKNQGKVFSIDQI 181 Query: 174 FSAIYGLFDEAVEENVVESHISKLRKKLR-NKLGFDPVDSKRFLGYSIDW 222 + +I+ V+ N V HI +R+K+ N + +GY I+ Sbjct: 182 YESIWNEDAIGVD-NTVAVHIRHIREKIEINPKEPRYLKVVWGVGYKIEK 230 >gi|47568103|ref|ZP_00238808.1| DNA-binding response regulator RegX3 [Bacillus cereus G9241] gi|47555257|gb|EAL13603.1| DNA-binding response regulator RegX3 [Bacillus cereus G9241] Length = 225 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 45/220 (20%), Positives = 76/220 (34%), Gaps = 6/220 (2%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L+DD + + G + S E + ++ Sbjct: 4 ILLVDDEPRMLELLTLYLTPTGYNCICARSGEEAISHIENQNFKFVLLDIM--MPTMDGW 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 E + IR+ S VP+I ++ + G DD V KP H E+ R Sbjct: 62 ETCKKIRSFSNVPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEEL-FARIEAVLRRTN 120 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181 + + I V E L E +L + + +++ Q+ I+GL Sbjct: 121 QRTQIQYHGILWDEAKHFVSVYNEELLLTPIEFSLLGLFLRHVNYVLSRDQLIERIWGL- 179 Query: 182 DEAVEENVVESHISKLRKKLRNK--LGFDPVDSKRFLGYS 219 + E+ V+SHI LR KLR D + + +GY Sbjct: 180 NTNTEDRTVDSHIRNLRDKLRKVNFPIDDHLKTVYGVGYR 219 >gi|326387405|ref|ZP_08209014.1| two component transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] gi|326208061|gb|EGD58869.1| two component transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] Length = 263 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 47/226 (20%), Positives = 90/226 (39%), Gaps = 10/226 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +L++D ++ G + ++ S D+ ++ L G+ + Sbjct: 34 ILLVEDDPALRLLTARALRAHGYDVGTASTGAEMWVALESGAVDLIVLDIML--PGQTGI 91 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 EL R +R S VP+I IS S + + G DD + KP RE++AR+ A+ RR + Sbjct: 92 ELFRRLRRDSDVPVIFISARGSEDDRVLGLELGADDYLPKPFGTRELIARIGAVLRRGQA 151 Query: 122 SNNRAETGPIRVFSDGRDPEVQGEVFPL-------PRRERRILEYLMANRGKRVAKTQIF 174 + R G F R + E+ E +L + + + + ++ Sbjct: 152 EDERPARGRDLEFDGWRLSLGRHELRSPQGALVDLTGAEFDLLATFLNQPQRVIGRQRLI 211 Query: 175 SAIYGLFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSI 220 + + ++ +S+LR+KL G P+ + R +GY Sbjct: 212 E-LSRTRQSDSSDRSIDVLVSRLRRKLTGPSGNAPIVTVRGVGYMF 256 >gi|291561248|emb|CBL40047.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [butyrate-producing bacterium SS3/4] Length = 221 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 48/222 (21%), Positives = 94/222 (42%), Gaps = 4/222 (1%) Query: 1 MFVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIG-KGEK 59 + ++D + + + + G +EGF + D++ ++ L G + Sbjct: 3 LIYAVEDDKNILEIEMFALKNSGYQVEGFECARDFYKKLEEKQPDLALLDIMLPDEDGLE 62 Query: 60 VLELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRL 119 ++ R ++P+I ++ + + D G DD + KP E++ARV A+ RR Sbjct: 63 IVAKLRRRPETKKLPIIMVTAKSTEIDKVKGLDVGADDYLTKPFGVMELIARVKAVLRRT 122 Query: 120 KVSNNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYG 179 + G I + + V+ L +E +L+ L+ N G V + I ++G Sbjct: 123 MEEDKFLTLGDIFLDDEKHMVYVKDVPCSLTFKEYELLKLLLHNAGIVVTREIILERVWG 182 Query: 180 LFDEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGYSID 221 + D E ++ HI LR+KL + + R +GY I+ Sbjct: 183 I-DFEGESRTLDMHIRTLRQKLGEAGS--MIRTVRNVGYMIE 221 >gi|291539027|emb|CBL12138.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Roseburia intestinalis XB6B4] Length = 224 Score = 134 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 44/225 (19%), Positives = 90/225 (40%), Gaps = 10/225 (4%) Query: 2 FVLIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61 +++DD ++ +G + + + D+ ++ Sbjct: 4 ILVVDDEDKIRAIIRKYGEFEGYEIAEAHDGMEAVEICRKEDFDLIILDVM--MPELDGF 61 Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121 R IR ++P+I +S + F+ G+DD V KP RE++ RV + R Sbjct: 62 STCREIRKFKEIPVIMLSARGEEYDKIHGFELGIDDYVVKPFSPRELMMRVKVVISRNNK 121 Query: 122 SNNRAETGPIR-----VFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSA 176 + R + V GR V G+ + +E +L YL+ NR + + ++ + Sbjct: 122 KDVRDGHEIFQAEGLVVDFTGRTVTVDGKRVEMSPKEYELLFYLVRNRNIALD