RPSBLAST alignment of GI: 254780526 and protein with PDBid: 1kgs

>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix-turn-helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 Length = 225

 Score = 79.9 bits (196), Expect = 4e-16
 Identities = 46/217 (21%), Positives = 98/217 (45%), Gaps = 5/217 (2%)

Query: 4   LIDDRALVKDGYIALFGDDGVSLEGFNSLEFEEWLQSSAREDVSAIEA-FLIGKGEKVLE 62
           +++D   + D        +  +++       EE +  +  E    +    ++   +    
Sbjct: 7   VVEDERDLADLITEALKKEMFTVDVCYD--GEEGMYMALNEPFDVVILDIMLPVHDGWEI 64

Query: 63  LPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKVS 122
           L  +  +    P++ ++    ++  +   + G DD + KP   RE++ARV A+ RR   S
Sbjct: 65  LKSMRESGVNTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRRKSES 124

Query: 123 -NNRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAKTQIFSAIYGLF 181
            + +   G + + +  +      +   L ++E +ILEYL+ N+ + V K ++   ++  F
Sbjct: 125 KSTKLVCGDLILDTATKKAYRGSKEIDLTKKEYQILEYLVMNKNRVVTKEELQEHLWS-F 183

Query: 182 DEAVEENVVESHISKLRKKLRNKLGFDPVDSKRFLGY 218
           D+ V  +V+ SHI  LRKK+        + + R +GY
Sbjct: 184 DDEVFSDVLRSHIKNLRKKVDKGFKKKIIHTVRGIGY 220