RPSBLAST alignment of GI: 254780526 and protein with PDBid: 1s8n
>1s8n_A Putative antiterminator; structural genomics, transcriptional antiterminator, two component system, PSI; 1.48A {Mycobacterium tuberculosis H37RV} SCOP: c.23.1.1 PDB: 1sd5_A Length = 205
Score = 49.1 bits (116), Expect = 7e-07
Identities = 19/176 (10%), Positives = 60/176 (34%), Gaps = 12/176 (6%)
Query: 4 LIDDRALVKDGYIALFGDDG--VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
+ +D AL++ + ++G + E + E E + + D+ ++ + + +
Sbjct: 18 IAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELAEL-HKPDLVIMDVKMPRR--DGI 74
Query: 62 ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
+ I + P++ ++ + D+G + KP +++ + R +
Sbjct: 75 DAASEIASKRIAPIVVLTAFSQRDLVERARDAGAMAYLVKPFSISDLIPAIELAVSRFRE 134
Query: 122 SN-------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
+E R + +Q + + ++ +R + +
Sbjct: 135 ITALEGEVATLSERLETRKLVERAKGLLQTKHGMTEPDAFKWIQRAAMDRRTTMKR 190