RPSBLAST alignment of GI: 254780526 and protein with PDBid: 1s8n

>1s8n_A Putative antiterminator; structural genomics, transcriptional antiterminator, two component system, PSI; 1.48A {Mycobacterium tuberculosis H37RV} SCOP: c.23.1.1 PDB: 1sd5_A Length = 205
 Score = 49.1 bits (116), Expect = 7e-07
 Identities = 19/176 (10%), Positives = 60/176 (34%), Gaps = 12/176 (6%)

Query: 4   LIDDRALVKDGYIALFGDDG--VSLEGFNSLEFEEWLQSSAREDVSAIEAFLIGKGEKVL 61
           + +D AL++     +  ++G  +  E  +  E  E  +   + D+  ++  +  +    +
Sbjct: 18  IAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELAEL-HKPDLVIMDVKMPRR--DGI 74

Query: 62  ELPRIIRAHSQVPLIGISDYPSLQTTLDFFDSGVDDVVNKPIHHREILARVAAIYRRLKV 121
           +    I +    P++ ++ +          D+G    + KP    +++  +     R + 
Sbjct: 75  DAASEIASKRIAPIVVLTAFSQRDLVERARDAGAMAYLVKPFSISDLIPAIELAVSRFRE 134

Query: 122 SN-------NRAETGPIRVFSDGRDPEVQGEVFPLPRRERRILEYLMANRGKRVAK 170
                      +E    R   +     +Q +         + ++    +R   + +
Sbjct: 135 ITALEGEVATLSERLETRKLVERAKGLLQTKHGMTEPDAFKWIQRAAMDRRTTMKR 190