HHsearch alignment for GI: 254780527 and conserved domain: pfam02120
>pfam02120 Flg_hook Flagellar hook-length control protein FliK. This is the C terminal domain of FliK. FliK controls the length of the flagellar hook by directly measuring the hook length as a molecular ruler. This family also includes YscP of the Yersinia type III secretion system, and equivalent proteins in other pathogenic bacterial type III secretion systems.
Probab=90.28 E-value=1.5 Score=23.62 Aligned_cols=70 Identities=17% Similarity=0.288 Sum_probs=62.6
Q ss_pred CCCEEEEEEEECCCCCCCEEEEEEECCCEEEEEEEECHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHH
Q ss_conf 6524799999458982004554553484458999951157898876336767753043760110000011
Q gi|254780527|r 257 TGSIKALTIQMKPNSPDNIVATLCLSGEKLSVKLRVESDFLYKKIQSGRQNILDALNFSGYTMDRFDVEF 326 (397)
Q Consensus 257 tgsikaltiqmkpnspdnivatlclsgeklsvklrvesdflykkiqsgrqnildalnfsgytmdrfdvef 326 (397)
T Consensus 9 ~~~~~~~~i~L~p~~LG~v~i~l~~~~~~l~v~~~~~~~~~~~~L~~~~~~L~~~L~~~G~~~~~~~v~~ 78 (85)
T pfam02120 9 ANGVWRAELRLDPPELGPVEVRLSLDGGQLSVRFTAENPETRELLEQNLPRLREALAAQGLELADLSVSQ 78 (85)
T ss_pred HCCCCEEEEEECCHHCCCEEEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 8898289999883682958999999689799999978789999999989999999998699841579835