Query         gi|254780527|ref|YP_003064940.1| hypothetical protein CLIBASIA_02070 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 397
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 33803
Date          Wed Jun  1 16:37:22 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780527.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >3a69_A Flagellar HOOK protein  32.0      26 0.00078   14.8   1.9   22  373-394    16-37  (45)
  2 >2jo8_A Serine/threonine-prote  31.1      30 0.00087   14.4   2.0   21  293-313    29-49  (51)
  3 >3by4_A OTU1, ubiquitin thioes  25.7      32 0.00094   14.2   1.4   60  151-210    26-91  (212)
  4 >3bz1_L Photosystem II reactio  19.7      25 0.00075   14.9  -0.1   19   42-60      1-19  (37)
  5 >3imh_A Galactose-1-epimerase;  19.6      38  0.0011   13.7   0.8   23   54-76      8-30  (33)
  6 >3c5m_A Oligogalacturonate lya  19.4      39  0.0011   13.7   0.8   20  131-150     3-22  (41)
  7 >2vbc_A Dengue 4 NS3 FULL-leng  18.7      53  0.0016   12.7   2.1   26  371-396    43-68  (88)
  8 >2jo7_A Glycosylphosphatidylin  18.1      43  0.0013   13.3   0.8   19  122-140    24-43  (96)
  9 >1p42_A UDP-3-O-[3-hydroxymyri  17.1      51  0.0015   12.8   1.0   22  319-340    57-78  (112)
 10 >1jrm_A MTH0637, conserved hyp  14.9      51  0.0015   12.8   0.5   44  247-292     2-45  (104)

No 1  
>>3a69_A Flagellar HOOK protein FLGE; the bacterial flagellar motor, universal joint, bacterial flagellum, motor protein; 7.10A {Salmonella enterica subsp} (A:117-132,A:286-314)
Probab=32.03  E-value=26  Score=14.80  Aligned_cols=22  Identities=41%  Similarity=0.496  Sum_probs=17.5

Q ss_pred             CCCCCCCEEECCCEEEEEECCE
Q ss_conf             3433333032155088984040
Q gi|254780527|r  373 WGEKRSGLIYNKGEIIGIYSNY  394 (397)
Q Consensus       373 wgekrsgliynkgeiigiysny  394 (397)
                      -||-.+--|-+.|.++|.|||-
T Consensus        16 nGelt~yqIn~DGtvvG~YSN~   37 (45)
T 3a69_A           16 NGDLVSYQINNDGTVVGNYSNE   37 (45)
T ss_dssp             CCCEEEEEECTTCEEEEEETTS
T ss_pred             CCCCCCCCCCCCCEEEEEECCC
T ss_conf             6422334457775389850554


No 2  
>>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens} (A:)
Probab=31.10  E-value=30  Score=14.45  Aligned_cols=21  Identities=48%  Similarity=0.551  Sum_probs=16.0

Q ss_pred             CHHHHHHHHHHHHHHHHHHCC
Q ss_conf             115789887633676775304
Q gi|254780527|r  293 ESDFLYKKIQSGRQNILDALN  313 (397)
Q Consensus       293 esdflykkiqsgrqnildaln  313 (397)
                      |-+-|-++-|+-||-||||..
T Consensus        29 Eieelr~RYq~KRqPILdAie   49 (51)
T 2jo8_A           29 EIEEIRQKYQSKRQPILDAIE   49 (51)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHCCHHHHHH
T ss_conf             999999998874343999975


No 3  
>>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A (A:)
Probab=25.74  E-value=32  Score=14.22  Aligned_cols=60  Identities=15%  Similarity=0.150  Sum_probs=47.4

Q ss_pred             CCCCHHHHHHHHHHHHCCCCC------HHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHH
Q ss_conf             114410188899753124450------678988888863137887878888752121234446542
Q gi|254780527|r  151 YSDGLCTITDVFSQLKSDSGS------FSNYLRHRKEMFSEDVPLNPVDFLLEKQLDTASLGEEIC  210 (397)
Q Consensus       151 ysdglctitdvfsqlksdsgs------fsnylrhrkemfsedvplnpvdfllekqldtaslgeeic  210 (397)
                      -.||-|-..-+-.||-++.-.      ..+|++...+.|.+-+.-.+.+-.+.+.....+.|.+|+
T Consensus        26 ~~DGnClFrais~~l~~~~~~~~lR~~~~~~i~~~~~~f~~~~~~~~~~~y~~~~~~~~~wg~~ie   91 (212)
T 3by4_A           26 LDDNSCLFHAIAYGIFKQDSVRDLREMVSKEVLNNPVKFNDAILDKPNKDYAQWILKMESWGGAIE   91 (212)
T ss_dssp             CCSTTHHHHHHHHHHHSSCCSHHHHHHHHHHHHHCTTTTCHHHHTSCHHHHHHHTTSTTSCCCHHH
T ss_pred             CCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCHHHCCCCCCCCCHHHHHHHHCCCCCCCCHHH
T ss_conf             999852589989987489619999999999999796652300027888999998558875125799


No 4  
>>3bz1_L Photosystem II reaction center protein L; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz2_L* (L:)
Probab=19.73  E-value=25  Score=14.91  Aligned_cols=19  Identities=32%  Similarity=0.648  Sum_probs=14.0

Q ss_pred             CCCCCCCCCCCCCCCEEEE
Q ss_conf             0468983322334420144
Q gi|254780527|r   42 INKNPNKQDFDVQNKSLFE   60 (397)
Q Consensus        42 inknpnkqdfdvqnkslfe   60 (397)
                      .+.|||+|..+....||+-
T Consensus         1 ~~~Npn~q~veLnrtsLy~   19 (37)
T 3bz1_L            1 MEPNPNRQPVELNRTSLYL   19 (37)
T ss_dssp             CCCCTTCCCBCCCHHHHHH
T ss_pred             CCCCCCCCCCCHHHHHHHH
T ss_conf             9999888874000555999


No 5  
>>3imh_A Galactose-1-epimerase; structural genomics, PSI-2, protein structure initiative; 1.76A {Lactobacillus acidophilus ncfm} (A:75-107)
Probab=19.61  E-value=38  Score=13.73  Aligned_cols=23  Identities=43%  Similarity=0.439  Sum_probs=17.1

Q ss_pred             CCCEEEEEEEHHCCCCCCCCCCH
Q ss_conf             44201443202177753222304
Q gi|254780527|r   54 QNKSLFEIFLTTIPDADNHIHED   76 (397)
Q Consensus        54 qnkslfeiflttipdadnhihed   76 (397)
                      |-|.-.||+--.+-|.+||||-.
T Consensus         8 qwkhg~ei~qlp~ndgenhihgg   30 (33)
T 3imh_A            8 QWKHGNEIHQLPLNDGDNHIHGG   30 (33)
T ss_dssp             EEEETTEEEECCCCBTTBEETTS
T ss_pred             CEEECCEEEECCCCCCCCCCCCC
T ss_conf             58899999845788886542665


No 6  
>>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} (A:82-122)
Probab=19.43  E-value=39  Score=13.66  Aligned_cols=20  Identities=25%  Similarity=0.434  Sum_probs=11.1

Q ss_pred             HHHHCCCCEEEEEECCCCCC
Q ss_conf             44220876146762466553
Q gi|254780527|r  131 ISGFLSPDFSILLKNKTDRD  150 (397)
Q Consensus       131 isgflspdfsillknktdrd  150 (397)
                      ..||||||=..+.--|.+|.
T Consensus         3 FGGFlS~dD~~l~yVKn~r~   22 (41)
T 3c5m_A            3 FGGFISTDERAFFYVKNELN   22 (41)
T ss_dssp             TTCEECTTSSEEEEEETTTE
T ss_pred             EEEEEECCCCEEEEEECCCC
T ss_conf             52499679979999917996


No 7  
>>2vbc_A Dengue 4 NS3 FULL-length protein; transmembrane, RNA replication, NS2B-NS3 protease; 3.15A {Dengue virus type 4} (A:88-175)
Probab=18.70  E-value=53  Score=12.74  Aligned_cols=26  Identities=38%  Similarity=0.623  Sum_probs=16.6

Q ss_pred             HCCCCCCCCEEECCCEEEEEECCEEE
Q ss_conf             11343333303215508898404044
Q gi|254780527|r  371 FFWGEKRSGLIYNKGEIIGIYSNYIY  396 (397)
Q Consensus       371 ffwgekrsgliynkgeiigiysnyiy  396 (397)
                      |--|.-.|-.|-.+|+++|.|-|=++
T Consensus        43 ~p~GTSGSPIin~~G~VvGLYGNGv~   68 (88)
T 2vbc_A           43 FKPGTSGSPIINKKGKVIGLYGNGVV   68 (88)
T ss_dssp             CCTTCTTCEEECSSSSEEEEEECCCC
T ss_pred             CCCCCCCCCCCCCCCCEEEEEEEEEE
T ss_conf             89999988738899968998601788


No 8  
>>2jo7_A Glycosylphosphatidylinositol-anchored merozoite surface protein; surface antigen, GPI-anchored protein, recombinant vaccine; NMR {Babesia divergens} (A:129-224)
Probab=18.15  E-value=43  Score=13.33  Aligned_cols=19  Identities=37%  Similarity=0.749  Sum_probs=13.5

Q ss_pred             CCCCCCHHHHHHHCC-CCEE
Q ss_conf             367010455442208-7614
Q gi|254780527|r  122 SKSPQDIEDISGFLS-PDFS  140 (397)
Q Consensus       122 skspqdiedisgfls-pdfs  140 (397)
                      +.++-..|||||||. |++.
T Consensus        24 ~psflt~eDIs~fLTVP~YG   43 (96)
T 2jo7_A           24 TPTFLTSEDISGYLTVPEYG   43 (96)
T ss_dssp             SSCCSCHHHHHHHHHCCSTT
T ss_pred             CCCCCCHHHHHHHEECCCCC
T ss_conf             89766487663321066568


No 9  
>>1p42_A UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; alpha+beta fold, hydrophobic tunnel, hydrolase; HET: MYR; 2.00A {Aquifex aeolicus} (A:120-177,A:217-270)
Probab=17.09  E-value=51  Score=12.84  Aligned_cols=22  Identities=32%  Similarity=0.442  Sum_probs=18.5

Q ss_pred             EEEEEHHHHHHHHHHHHHHHHH
Q ss_conf             1000001100000788887677
Q gi|254780527|r  319 MDRFDVEFVRKDSLDLLKDSMN  340 (397)
Q Consensus       319 mdrfdvefvrkdsldllkdsmn  340 (397)
                      ..||.-||||..-||++-|-.-
T Consensus        57 ~~Rf~DEfVRHKILDlIGDLaL   78 (112)
T 1p42_A           57 ARRYENEPVRHKVFDLIGDLYL   78 (112)
T ss_dssp             CCSSTTHHHHHHHHHHHHHHGG
T ss_pred             CCCCCCCCCCHHHHHHHHHHHH
T ss_conf             3667883105568898878987


No 10 
>>1jrm_A MTH0637, conserved hypothetical protein MTH637; alpha-beta protein, structural genomics, OCSP, NESG; NMR {Methanothermobacterthermautotrophicus} (A:)
Probab=14.93  E-value=51  Score=12.85  Aligned_cols=44  Identities=11%  Similarity=0.163  Sum_probs=31.4

Q ss_pred             ECCCCEEECCCCCEEEEEEEECCCCCCCEEEEEEECCCEEEEEEEE
Q ss_conf             5234223204652479999945898200455455348445899995
Q gi|254780527|r  247 MIPESVHYTDTGSIKALTIQMKPNSPDNIVATLCLSGEKLSVKLRV  292 (397)
Q Consensus       247 mipesvhytdtgsikaltiqmkpnspdnivatlclsgeklsvklrv  292 (397)
                      |++..+..++.|  --++|..+|++--+-++-+.-.++.|.|+++-
T Consensus         2 m~~~~i~~~~~~--~~i~i~V~P~a~~~~i~g~~~~~~~l~v~v~a   45 (104)
T 1jrm_A            2 ITMDCLREVGDD--LLVNIEVSPASGKFGIPSYNEWRKRIEVKIHS   45 (104)
T ss_dssp             CCCCCEEEETTE--EEEEEESCCCSSSCCCCCCCTTTTCCCCCCCT
T ss_pred             CCHHHHEECCCE--EEEEEEEEECCCCCEEEEECCCCCEEEEEEEC
T ss_conf             566886056982--99999997489754363051779889999956


Done!