Query gi|254780527|ref|YP_003064940.1| hypothetical protein CLIBASIA_02070 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 397 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 33803 Date Wed Jun 1 16:37:22 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780527.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >3a69_A Flagellar HOOK protein 32.0 26 0.00078 14.8 1.9 22 373-394 16-37 (45) 2 >2jo8_A Serine/threonine-prote 31.1 30 0.00087 14.4 2.0 21 293-313 29-49 (51) 3 >3by4_A OTU1, ubiquitin thioes 25.7 32 0.00094 14.2 1.4 60 151-210 26-91 (212) 4 >3bz1_L Photosystem II reactio 19.7 25 0.00075 14.9 -0.1 19 42-60 1-19 (37) 5 >3imh_A Galactose-1-epimerase; 19.6 38 0.0011 13.7 0.8 23 54-76 8-30 (33) 6 >3c5m_A Oligogalacturonate lya 19.4 39 0.0011 13.7 0.8 20 131-150 3-22 (41) 7 >2vbc_A Dengue 4 NS3 FULL-leng 18.7 53 0.0016 12.7 2.1 26 371-396 43-68 (88) 8 >2jo7_A Glycosylphosphatidylin 18.1 43 0.0013 13.3 0.8 19 122-140 24-43 (96) 9 >1p42_A UDP-3-O-[3-hydroxymyri 17.1 51 0.0015 12.8 1.0 22 319-340 57-78 (112) 10 >1jrm_A MTH0637, conserved hyp 14.9 51 0.0015 12.8 0.5 44 247-292 2-45 (104) No 1 >>3a69_A Flagellar HOOK protein FLGE; the bacterial flagellar motor, universal joint, bacterial flagellum, motor protein; 7.10A {Salmonella enterica subsp} (A:117-132,A:286-314) Probab=32.03 E-value=26 Score=14.80 Aligned_cols=22 Identities=41% Similarity=0.496 Sum_probs=17.5 Q ss_pred CCCCCCCEEECCCEEEEEECCE Q ss_conf 3433333032155088984040 Q gi|254780527|r 373 WGEKRSGLIYNKGEIIGIYSNY 394 (397) Q Consensus 373 wgekrsgliynkgeiigiysny 394 (397) -||-.+--|-+.|.++|.|||- T Consensus 16 nGelt~yqIn~DGtvvG~YSN~ 37 (45) T 3a69_A 16 NGDLVSYQINNDGTVVGNYSNE 37 (45) T ss_dssp CCCEEEEEECTTCEEEEEETTS T ss_pred CCCCCCCCCCCCCEEEEEECCC T ss_conf 6422334457775389850554 No 2 >>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens} (A:) Probab=31.10 E-value=30 Score=14.45 Aligned_cols=21 Identities=48% Similarity=0.551 Sum_probs=16.0 Q ss_pred CHHHHHHHHHHHHHHHHHHCC Q ss_conf 115789887633676775304 Q gi|254780527|r 293 ESDFLYKKIQSGRQNILDALN 313 (397) Q Consensus 293 esdflykkiqsgrqnildaln 313 (397) |-+-|-++-|+-||-||||.. T Consensus 29 Eieelr~RYq~KRqPILdAie 49 (51) T 2jo8_A 29 EIEEIRQKYQSKRQPILDAIE 49 (51) T ss_dssp HHHHHHHHHHHHHHHHHHHHT T ss_pred HHHHHHHHHHHHHCCHHHHHH T ss_conf 999999998874343999975 No 3 >>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A (A:) Probab=25.74 E-value=32 Score=14.22 Aligned_cols=60 Identities=15% Similarity=0.150 Sum_probs=47.4 Q ss_pred CCCCHHHHHHHHHHHHCCCCC------HHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHH Q ss_conf 114410188899753124450------678988888863137887878888752121234446542 Q gi|254780527|r 151 YSDGLCTITDVFSQLKSDSGS------FSNYLRHRKEMFSEDVPLNPVDFLLEKQLDTASLGEEIC 210 (397) Q Consensus 151 ysdglctitdvfsqlksdsgs------fsnylrhrkemfsedvplnpvdfllekqldtaslgeeic 210 (397) -.||-|-..-+-.||-++.-. ..+|++...+.|.+-+.-.+.+-.+.+.....+.|.+|+ T Consensus 26 ~~DGnClFrais~~l~~~~~~~~lR~~~~~~i~~~~~~f~~~~~~~~~~~y~~~~~~~~~wg~~ie 91 (212) T 3by4_A 26 LDDNSCLFHAIAYGIFKQDSVRDLREMVSKEVLNNPVKFNDAILDKPNKDYAQWILKMESWGGAIE 91 (212) T ss_dssp CCSTTHHHHHHHHHHHSSCCSHHHHHHHHHHHHHCTTTTCHHHHTSCHHHHHHHTTSTTSCCCHHH T ss_pred CCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCHHHCCCCCCCCCHHHHHHHHCCCCCCCCHHH T ss_conf 999852589989987489619999999999999796652300027888999998558875125799 No 4 >>3bz1_L Photosystem II reaction center protein L; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz2_L* (L:) Probab=19.73 E-value=25 Score=14.91 Aligned_cols=19 Identities=32% Similarity=0.648 Sum_probs=14.0 Q ss_pred CCCCCCCCCCCCCCCEEEE Q ss_conf 0468983322334420144 Q gi|254780527|r 42 INKNPNKQDFDVQNKSLFE 60 (397) Q Consensus 42 inknpnkqdfdvqnkslfe 60 (397) .+.|||+|..+....||+- T Consensus 1 ~~~Npn~q~veLnrtsLy~ 19 (37) T 3bz1_L 1 MEPNPNRQPVELNRTSLYL 19 (37) T ss_dssp CCCCTTCCCBCCCHHHHHH T ss_pred CCCCCCCCCCCHHHHHHHH T ss_conf 9999888874000555999 No 5 >>3imh_A Galactose-1-epimerase; structural genomics, PSI-2, protein structure initiative; 1.76A {Lactobacillus acidophilus ncfm} (A:75-107) Probab=19.61 E-value=38 Score=13.73 Aligned_cols=23 Identities=43% Similarity=0.439 Sum_probs=17.1 Q ss_pred CCCEEEEEEEHHCCCCCCCCCCH Q ss_conf 44201443202177753222304 Q gi|254780527|r 54 QNKSLFEIFLTTIPDADNHIHED 76 (397) Q Consensus 54 qnkslfeiflttipdadnhihed 76 (397) |-|.-.||+--.+-|.+||||-. T Consensus 8 qwkhg~ei~qlp~ndgenhihgg 30 (33) T 3imh_A 8 QWKHGNEIHQLPLNDGDNHIHGG 30 (33) T ss_dssp EEEETTEEEECCCCBTTBEETTS T ss_pred CEEECCEEEECCCCCCCCCCCCC T ss_conf 58899999845788886542665 No 6 >>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} (A:82-122) Probab=19.43 E-value=39 Score=13.66 Aligned_cols=20 Identities=25% Similarity=0.434 Sum_probs=11.1 Q ss_pred HHHHCCCCEEEEEECCCCCC Q ss_conf 44220876146762466553 Q gi|254780527|r 131 ISGFLSPDFSILLKNKTDRD 150 (397) Q Consensus 131 isgflspdfsillknktdrd 150 (397) ..||||||=..+.--|.+|. T Consensus 3 FGGFlS~dD~~l~yVKn~r~ 22 (41) T 3c5m_A 3 FGGFISTDERAFFYVKNELN 22 (41) T ss_dssp TTCEECTTSSEEEEEETTTE T ss_pred EEEEEECCCCEEEEEECCCC T ss_conf 52499679979999917996 No 7 >>2vbc_A Dengue 4 NS3 FULL-length protein; transmembrane, RNA replication, NS2B-NS3 protease; 3.15A {Dengue virus type 4} (A:88-175) Probab=18.70 E-value=53 Score=12.74 Aligned_cols=26 Identities=38% Similarity=0.623 Sum_probs=16.6 Q ss_pred HCCCCCCCCEEECCCEEEEEECCEEE Q ss_conf 11343333303215508898404044 Q gi|254780527|r 371 FFWGEKRSGLIYNKGEIIGIYSNYIY 396 (397) Q Consensus 371 ffwgekrsgliynkgeiigiysnyiy 396 (397) |--|.-.|-.|-.+|+++|.|-|=++ T Consensus 43 ~p~GTSGSPIin~~G~VvGLYGNGv~ 68 (88) T 2vbc_A 43 FKPGTSGSPIINKKGKVIGLYGNGVV 68 (88) T ss_dssp CCTTCTTCEEECSSSSEEEEEECCCC T ss_pred CCCCCCCCCCCCCCCCEEEEEEEEEE T ss_conf 89999988738899968998601788 No 8 >>2jo7_A Glycosylphosphatidylinositol-anchored merozoite surface protein; surface antigen, GPI-anchored protein, recombinant vaccine; NMR {Babesia divergens} (A:129-224) Probab=18.15 E-value=43 Score=13.33 Aligned_cols=19 Identities=37% Similarity=0.749 Sum_probs=13.5 Q ss_pred CCCCCCHHHHHHHCC-CCEE Q ss_conf 367010455442208-7614 Q gi|254780527|r 122 SKSPQDIEDISGFLS-PDFS 140 (397) Q Consensus 122 skspqdiedisgfls-pdfs 140 (397) +.++-..|||||||. |++. T Consensus 24 ~psflt~eDIs~fLTVP~YG 43 (96) T 2jo7_A 24 TPTFLTSEDISGYLTVPEYG 43 (96) T ss_dssp SSCCSCHHHHHHHHHCCSTT T ss_pred CCCCCCHHHHHHHEECCCCC T ss_conf 89766487663321066568 No 9 >>1p42_A UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; alpha+beta fold, hydrophobic tunnel, hydrolase; HET: MYR; 2.00A {Aquifex aeolicus} (A:120-177,A:217-270) Probab=17.09 E-value=51 Score=12.84 Aligned_cols=22 Identities=32% Similarity=0.442 Sum_probs=18.5 Q ss_pred EEEEEHHHHHHHHHHHHHHHHH Q ss_conf 1000001100000788887677 Q gi|254780527|r 319 MDRFDVEFVRKDSLDLLKDSMN 340 (397) Q Consensus 319 mdrfdvefvrkdsldllkdsmn 340 (397) ..||.-||||..-||++-|-.- T Consensus 57 ~~Rf~DEfVRHKILDlIGDLaL 78 (112) T 1p42_A 57 ARRYENEPVRHKVFDLIGDLYL 78 (112) T ss_dssp CCSSTTHHHHHHHHHHHHHHGG T ss_pred CCCCCCCCCCHHHHHHHHHHHH T ss_conf 3667883105568898878987 No 10 >>1jrm_A MTH0637, conserved hypothetical protein MTH637; alpha-beta protein, structural genomics, OCSP, NESG; NMR {Methanothermobacterthermautotrophicus} (A:) Probab=14.93 E-value=51 Score=12.85 Aligned_cols=44 Identities=11% Similarity=0.163 Sum_probs=31.4 Q ss_pred ECCCCEEECCCCCEEEEEEEECCCCCCCEEEEEEECCCEEEEEEEE Q ss_conf 5234223204652479999945898200455455348445899995 Q gi|254780527|r 247 MIPESVHYTDTGSIKALTIQMKPNSPDNIVATLCLSGEKLSVKLRV 292 (397) Q Consensus 247 mipesvhytdtgsikaltiqmkpnspdnivatlclsgeklsvklrv 292 (397) |++..+..++.| --++|..+|++--+-++-+.-.++.|.|+++- T Consensus 2 m~~~~i~~~~~~--~~i~i~V~P~a~~~~i~g~~~~~~~l~v~v~a 45 (104) T 1jrm_A 2 ITMDCLREVGDD--LLVNIEVSPASGKFGIPSYNEWRKRIEVKIHS 45 (104) T ss_dssp CCCCCEEEETTE--EEEEEESCCCSSSCCCCCCCTTTTCCCCCCCT T ss_pred CCHHHHEECCCE--EEEEEEEEECCCCCEEEEECCCCCEEEEEEEC T ss_conf 566886056982--99999997489754363051779889999956 Done!