RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780527|ref|YP_003064940.1| hypothetical protein
CLIBASIA_02070 [Candidatus Liberibacter asiaticus str. psy62]
(397 letters)
>gnl|CDD|145333 pfam02120, Flg_hook, Flagellar hook-length control protein FliK.
This is the C terminal domain of FliK. FliK controls the
length of the flagellar hook by directly measuring the
hook length as a molecular ruler. This family also
includes YscP of the Yersinia type III secretion system,
and equivalent proteins in other pathogenic bacterial
type III secretion systems.
Length = 85
Score = 32.7 bits (75), Expect = 0.18
Identities = 14/75 (18%), Positives = 28/75 (37%)
Query: 250 ESVHYTDTGSIKALTIQMKPNSPDNIVATLCLSGEKLSVKLRVESDFLYKKIQSGRQNIL 309
E V + +++ P + L L G +LSV+ E+ + ++ +
Sbjct: 2 ERVAALAANGVWRAELRLDPPELGPVEVRLSLDGGQLSVRFTAENPETRELLEQNLPRLR 61
Query: 310 DALNFSGYTMDRFDV 324
+AL G + V
Sbjct: 62 EALAAQGLELADLSV 76
>gnl|CDD|34237 COG4606, CeuB, ABC-type enterochelin transport system, permease
component [Inorganic ion transport and metabolism].
Length = 321
Score = 31.7 bits (72), Expect = 0.40
Identities = 14/48 (29%), Positives = 22/48 (45%)
Query: 169 SGSFSNYLRHRKEMFSEDVPLNPVDFLLEKQLDTASLGEEICNLKGFS 216
G FS LR R E+ +PL + +L + A +GE+ G +
Sbjct: 172 QGDFSGVLRGRYELLWISIPLAILAYLFADRFTIAGMGEDFSVNLGLN 219
>gnl|CDD|36229 KOG1011, KOG1011, KOG1011, Neurotransmitter release regulator,
UNC-13 [Signal transduction mechanisms, Intracellular
trafficking, secretion, and vesicular transport].
Length = 1283
Score = 29.3 bits (65), Expect = 1.7
Identities = 36/155 (23%), Positives = 60/155 (38%), Gaps = 25/155 (16%)
Query: 25 DRLNSIQEEKRNNSTKTINKNPNKQDFDVQNKS---LFEIFLTTIPDADNHIHEDEERLI 81
+ SI EE +N+ T +N+ P Q+ +V S ++ +F + A H ++
Sbjct: 650 TLIVSIIEEDKNSYTPALNQFP--QELNVGKLSAEVMWSLFAQDMKYALEE-HAKKKLCK 706
Query: 82 DNDLIYNSYKGAMYPSASQYFT-VRDLSASEKDFPSIESFASKSPQDIEDISGFLSPDFS 140
D Y + Y V DL + P ++ D + +S DF
Sbjct: 707 SAD-----YMNLHFKVKWLYNEYVADLPTYKSSVPEYPAWFEPFVMQWLDENEEVSMDF- 760
Query: 141 ILLKNKTDRDYSDGL----------CTITDVFSQL 165
L+ +RD DG C++ DVF+QL
Sbjct: 761 --LRGALERDKKDGFQQTSEHALFSCSVVDVFTQL 793
>gnl|CDD|30528 COG0179, MhpD, 2-keto-4-pentenoate
hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase
(catechol pathway) [Secondary metabolites biosynthesis,
transport, and catabolism].
Length = 266
Score = 29.2 bits (65), Expect = 1.9
Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 172 FSNYLRHRKEMFSE-DVPLNPVDFL 195
NY H +EM + D+P PV FL
Sbjct: 66 GRNYADHAEEMGKDRDIPEEPVFFL 90
>gnl|CDD|31026 COG0682, Lgt, Prolipoprotein diacylglyceryltransferase [Cell
envelope biogenesis, outer membrane].
Length = 287
Score = 28.6 bits (64), Expect = 2.7
Identities = 13/49 (26%), Positives = 21/49 (42%)
Query: 296 FLYKKIQSGRQNILDALNFSGYTMDRFDVEFVRKDSLDLLKDSMNYCAQ 344
FL+++ + + L GY + RF +EF R+ L L Q
Sbjct: 208 FLFRRKPLLKSGFVFGLYLIGYGLFRFFIEFFREPDLMLGGLIRILMGQ 256
>gnl|CDD|31434 COG1241, MCM2, Predicted ATPase involved in replication control,
Cdc46/Mcm family [DNA replication, recombination, and
repair].
Length = 682
Score = 27.6 bits (61), Expect = 5.5
Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 9/83 (10%)
Query: 302 QSGRQNILDALNFSGYTMDRFDVEFVRKDSLDLLKDSMNYCAQQQGFTHSNEFEKKKLYF 361
++ + + +N + RFD+ FV KD D KD H +K +
Sbjct: 440 YDPKKTVAENINLPAPLLSRFDLIFVLKDDPDEEKDEEI-------AEH--ILDKHRGEE 490
Query: 362 PERERTEKKFFWGEKRSGLIYNK 384
PE + E+R + K
Sbjct: 491 PEETISLDGVDEVEERDFELLRK 513
>gnl|CDD|34706 COG5103, CDC39, Cell division control protein, negative regulator of
transcription [Cell division and chromosome partitioning
/ Transcription].
Length = 2005
Score = 27.4 bits (60), Expect = 6.7
Identities = 18/97 (18%), Positives = 41/97 (42%), Gaps = 2/97 (2%)
Query: 8 SYKGLLEANQYSLGHNDDRLNSIQEEKRNNSTKTINKNPNKQDFDVQNKSLFEIFLTTIP 67
+ L++ Y G + ++ + + + + K+ V N F +F +
Sbjct: 1567 ALPSLIKNRLYEEGSTEGTVSVLFRKIIKDILFVFAEAHRKRAEFVHNYLFFRLFSRILI 1626
Query: 68 DADNHIHEDEERLIDND-LIYNSYKGAMYPSASQYFT 103
+ + I ED ++N ++Y+ ++ A+ PS FT
Sbjct: 1627 ETLDVIDEDTSCFVNNRSVVYSIFE-ALQPSRFPGFT 1662
>gnl|CDD|146193 pfam03430, TATR, Trans-activating transcriptional regulator. This
family of trans-activating transcriptional regulator
(TATR), also known as intermediate early protein 1, are
common to the Nucleopolyhedroviruses.
Length = 571
Score = 27.2 bits (60), Expect = 9.1
Identities = 24/149 (16%), Positives = 43/149 (28%), Gaps = 10/149 (6%)
Query: 162 FSQLKSDSGSFSNYLRHRKEMFSEDVPLNPVDFLLEKQLDT------ASLGEEICNLKGF 215
F S+ F N E + + P + +E T I
Sbjct: 21 FPNSYSEFCDFDND-AISYENYDTEQPADLNISTVENAYKTVENASLTFFALYIPLTDSN 79
Query: 216 SVPSRYQSSDSLDALMSTESVLNQKSFMRVTMIPESVHYTDTGSIKALTIQMKPNSPDNI 275
R D + V ++ +PES+ T ++ + D+
Sbjct: 80 KPLPRAVPQDYERESAVSPIVEYPQALSPGESLPESLSETKQVTVSKRKGSELDSDSDSS 139
Query: 276 VATLCLSGEKLSVKLRVESDFLYKKIQSG 304
++ G+KL K + + IQS
Sbjct: 140 DSS---KGKKLVNKPKKRQKYKKATIQSP 165
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.315 0.132 0.372
Gapped
Lambda K H
0.267 0.0722 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 4,653,417
Number of extensions: 241879
Number of successful extensions: 382
Number of sequences better than 10.0: 1
Number of HSP's gapped: 382
Number of HSP's successfully gapped: 25
Length of query: 397
Length of database: 6,263,737
Length adjustment: 96
Effective length of query: 301
Effective length of database: 4,189,273
Effective search space: 1260971173
Effective search space used: 1260971173
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (26.1 bits)