RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780527|ref|YP_003064940.1| hypothetical protein
CLIBASIA_02070 [Candidatus Liberibacter asiaticus str. psy62]
         (397 letters)



>gnl|CDD|178750 PLN03211, PLN03211, ABC transporter G-25; Provisional.
          Length = 659

 Score = 29.1 bits (65), Expect = 1.9
 Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 7/34 (20%)

Query: 183 FSEDVPLNPVDFLLEKQLDTASLGEEICNLKGFS 216
           FS   P+NP DFLL+       L   +C   G S
Sbjct: 303 FSPSFPMNPADFLLD-------LANGVCQTDGVS 329


>gnl|CDD|185366 PRK15469, ghrA, bifunctional glyoxylate/hydroxypyruvate reductase
           A; Provisional.
          Length = 312

 Score = 28.6 bits (64), Expect = 3.0
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 5/35 (14%)

Query: 102 FTVRDLSASEKDFPSIESFASKSPQDIEDISGFLS 136
           F +R  S S K +P ++SFA +     E++S FLS
Sbjct: 160 FPLRCWSRSRKSWPGVQSFAGR-----EELSAFLS 189


>gnl|CDD|151793 pfam11352, DUF3155, Protein of unknown function (DUF3155).  This
           family of proteins with unknown function appears to be
           restricted to Cyanobacteria.
          Length = 90

 Score = 27.9 bits (62), Expect = 4.4
 Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 1/30 (3%)

Query: 348 FTHSNEFEKKKLYFPER-ERTEKKFFWGEK 376
           F H+N  +   L    R E T  ++FW EK
Sbjct: 40  FIHANGIQPPALLLVRRNEHTTDRYFWAEK 69


>gnl|CDD|179755 PRK04158, PRK04158, transcriptional repressor CodY; Validated.
          Length = 256

 Score = 27.8 bits (63), Expect = 4.9
 Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 6/66 (9%)

Query: 1   MKEVNNISYKGLLEANQYSLGHNDDRLNSIQEEKRNNSTKTINKNPNKQDFDVQNKSLFE 60
            +++ N   + +LE  Q+   +N+ +L ++ E + N     ++       F V+NK LF 
Sbjct: 55  KEKIENDRVEQMLEERQFPEEYNE-KLLNVYETEAN-----LDVESELTVFPVENKCLFP 108

Query: 61  IFLTTI 66
             LTTI
Sbjct: 109 DKLTTI 114


>gnl|CDD|149618 pfam08624, CRC_subunit, Chromatin remodelling complex subunit.
          This family has been identified as a subunit of
          chromatin remodelling complexes. Saccharomyces
          cerevisiae RSC7 and its paralogue the SWI/SNF global
          transcription activator complex subunit SWP82 have been
          identified as subunits of the RSC chromatin remodelling
          complex, and SWI/SNF chromatin remodelling complex
          respectively.
          Length = 139

 Score = 28.0 bits (63), Expect = 5.1
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 9/44 (20%)

Query: 49 QDFDVQNKSLFEIFLTTIPDADNHIHEDEERLIDNDLIYNSYKG 92
            F  ++ SL++I  T          +++E LID  +I  SYKG
Sbjct: 64 YLFFQKHPSLYKIITT---------QDEKEDLIDRGIIPYSYKG 98


>gnl|CDD|182650 PRK10691, PRK10691, hypothetical protein; Provisional.
          Length = 219

 Score = 27.7 bits (62), Expect = 6.0
 Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)

Query: 173 SNYLRHRKEMFSEDVPLNPVDFL 195
           SNY +H KEM S   P  PV F+
Sbjct: 24  SNYAKHIKEMGSA-TPEEPVLFI 45


>gnl|CDD|183527 PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase;
           Reviewed.
          Length = 269

 Score = 27.6 bits (62), Expect = 6.4
 Identities = 10/22 (45%), Positives = 14/22 (63%)

Query: 311 ALNFSGYTMDRFDVEFVRKDSL 332
           AL    Y++ RF +E +R DSL
Sbjct: 208 ALYLIWYSIGRFFIEGLRTDSL 229


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.315    0.132    0.372 

Gapped
Lambda     K      H
   0.267   0.0538    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 6,291,123
Number of extensions: 396193
Number of successful extensions: 473
Number of sequences better than 10.0: 1
Number of HSP's gapped: 473
Number of HSP's successfully gapped: 22
Length of query: 397
Length of database: 5,994,473
Length adjustment: 95
Effective length of query: 302
Effective length of database: 3,941,713
Effective search space: 1190397326
Effective search space used: 1190397326
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (26.6 bits)