BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780527|ref|YP_003064940.1| hypothetical protein CLIBASIA_02070 [Candidatus Liberibacter asiaticus str. psy62] (397 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780527|ref|YP_003064940.1| hypothetical protein CLIBASIA_02070 [Candidatus Liberibacter asiaticus str. psy62] Length = 397 Score = 815 bits (2105), Expect = 0.0, Method: Compositional matrix adjust. Identities = 397/397 (100%), Positives = 397/397 (100%) Query: 1 MKEVNNISYKGLLEANQYSLGHNDDRLNSIQEEKRNNSTKTINKNPNKQDFDVQNKSLFE 60 MKEVNNISYKGLLEANQYSLGHNDDRLNSIQEEKRNNSTKTINKNPNKQDFDVQNKSLFE Sbjct: 1 MKEVNNISYKGLLEANQYSLGHNDDRLNSIQEEKRNNSTKTINKNPNKQDFDVQNKSLFE 60 Query: 61 IFLTTIPDADNHIHEDEERLIDNDLIYNSYKGAMYPSASQYFTVRDLSASEKDFPSIESF 120 IFLTTIPDADNHIHEDEERLIDNDLIYNSYKGAMYPSASQYFTVRDLSASEKDFPSIESF Sbjct: 61 IFLTTIPDADNHIHEDEERLIDNDLIYNSYKGAMYPSASQYFTVRDLSASEKDFPSIESF 120 Query: 121 ASKSPQDIEDISGFLSPDFSILLKNKTDRDYSDGLCTITDVFSQLKSDSGSFSNYLRHRK 180 ASKSPQDIEDISGFLSPDFSILLKNKTDRDYSDGLCTITDVFSQLKSDSGSFSNYLRHRK Sbjct: 121 ASKSPQDIEDISGFLSPDFSILLKNKTDRDYSDGLCTITDVFSQLKSDSGSFSNYLRHRK 180 Query: 181 EMFSEDVPLNPVDFLLEKQLDTASLGEEICNLKGFSVPSRYQSSDSLDALMSTESVLNQK 240 EMFSEDVPLNPVDFLLEKQLDTASLGEEICNLKGFSVPSRYQSSDSLDALMSTESVLNQK Sbjct: 181 EMFSEDVPLNPVDFLLEKQLDTASLGEEICNLKGFSVPSRYQSSDSLDALMSTESVLNQK 240 Query: 241 SFMRVTMIPESVHYTDTGSIKALTIQMKPNSPDNIVATLCLSGEKLSVKLRVESDFLYKK 300 SFMRVTMIPESVHYTDTGSIKALTIQMKPNSPDNIVATLCLSGEKLSVKLRVESDFLYKK Sbjct: 241 SFMRVTMIPESVHYTDTGSIKALTIQMKPNSPDNIVATLCLSGEKLSVKLRVESDFLYKK 300 Query: 301 IQSGRQNILDALNFSGYTMDRFDVEFVRKDSLDLLKDSMNYCAQQQGFTHSNEFEKKKLY 360 IQSGRQNILDALNFSGYTMDRFDVEFVRKDSLDLLKDSMNYCAQQQGFTHSNEFEKKKLY Sbjct: 301 IQSGRQNILDALNFSGYTMDRFDVEFVRKDSLDLLKDSMNYCAQQQGFTHSNEFEKKKLY 360 Query: 361 FPERERTEKKFFWGEKRSGLIYNKGEIIGIYSNYIYV 397 FPERERTEKKFFWGEKRSGLIYNKGEIIGIYSNYIYV Sbjct: 361 FPERERTEKKFFWGEKRSGLIYNKGEIIGIYSNYIYV 397 >gi|254780791|ref|YP_003065204.1| exodeoxyribonuclease VII large subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 529 Score = 27.3 bits (59), Expect = 0.47, Method: Compositional matrix adjust. Identities = 11/20 (55%), Positives = 15/20 (75%) Query: 291 RVESDFLYKKIQSGRQNILD 310 R++SDFL IQ RQ+IL+ Sbjct: 356 RIKSDFLIHNIQKNRQHILE 375 >gi|254780788|ref|YP_003065201.1| transcription elongation factor NusA [Candidatus Liberibacter asiaticus str. psy62] Length = 526 Score = 24.3 bits (51), Expect = 3.8, Method: Compositional matrix adjust. Identities = 8/27 (29%), Positives = 16/27 (59%) Query: 189 LNPVDFLLEKQLDTASLGEEICNLKGF 215 L +D L+K++ + EE+C++ G Sbjct: 417 LEGIDITLQKKIRELGVSEELCSIPGI 443 >gi|254781051|ref|YP_003065464.1| alpha-ketoglutarate decarboxylase [Candidatus Liberibacter asiaticus str. psy62] Length = 957 Score = 24.3 bits (51), Expect = 3.9, Method: Compositional matrix adjust. Identities = 9/22 (40%), Positives = 15/22 (68%) Query: 336 KDSMNYCAQQQGFTHSNEFEKK 357 K+S +YC ++ G H+ E E+K Sbjct: 538 KESESYCPEKLGLLHNGENERK 559 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.315 0.132 0.372 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 267,011 Number of Sequences: 1233 Number of extensions: 11696 Number of successful extensions: 21 Number of sequences better than 100.0: 8 Number of HSP's better than 100.0 without gapping: 8 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 13 Number of HSP's gapped (non-prelim): 8 length of query: 397 length of database: 328,796 effective HSP length: 76 effective length of query: 321 effective length of database: 235,088 effective search space: 75463248 effective search space used: 75463248 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 39 (19.6 bits)