HHsearch alignment for GI: 254780528 and conserved domain: PRK12798
>PRK12798 chemotaxis protein; Reviewed.
Probab=100.00 E-value=0 Score=870.68 Aligned_cols=367 Identities=26% Similarity=0.346 Sum_probs=346.3
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCC
Q ss_conf 77668999999999999965988999999999999989986169676056233799999897489889999998618898
Q gi|254780528|r 29 TIVPYQCVRSLQRALDEAMRGDISLQKKIPDIVKETGVQLRATHMDVFVDNRNIDAVWIYTIISQDLSVVDDLIAKDTKG 108 (396)
Q Consensus 29 ~l~Py~lvRSLq~lQD~Va~Gd~sA~~~q~~Ll~~i~~~l~~a~~~vw~d~rNv~Aa~iY~lSGG~P~~lr~l~~~d~~~ 108 (396)
T Consensus 31 ~~~Py~lvRSLQ~lQD~ia~Gd~~A~~~qr~LL~~i~~~l~~a~~~vw~dprNv~Aaviy~lsGG~P~~l~~l~~~~~~~ 110 (416)
T PRK12798 31 AREPYKLVRSLQLLQDRVAAGDHSAHEMQRFLLGTIDERLRAADPEVWDDPRNVRAALIYLLSGGNPATLRKLLARDKLG 110 (416)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHCCCCC
T ss_conf 33819999999999999974888899999999999869987189877278641248887785189869999999726787
Q ss_pred CCCHHHHHHHHHHHCCCHHHHHHHHCCCCHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 43269999999972698799999831267100361000138887666643219899999999999967852999998776
Q gi|254780528|r 109 YFDIAIVYALKKYFSGQLEESSKELSKIKDKDNTRGIVPYLHLLIGRAMMPFSSQQAVHFFDYVRLTSPGTFLEEIALRN 188 (396)
Q Consensus 109 ~~d~~L~~g~laY~~Gr~~~a~~~L~~i~~~~lp~~lg~~laLv~a~l~~~~dp~~Al~llD~aRLlaPGTLvEEAALRR 188 (396)
T Consensus 111 ~~d~~l~~g~laY~~Gr~~ea~~~L~~i~~~~lp~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL~aPGTLvEEAALRR 190 (416)
T PRK12798 111 EVDQRLADGALAYLSGRGREARKLLSGVDPETLPAELGAYLALVQGNLMAATDPATALDRLDQARLLAPGTLVEEAALRR 190 (416)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 03299999999997698799998851378010472245779999888751368899999988999818815899999987
Q ss_pred HHHHHHC-CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
Q ss_conf 7887522-525899999999999720484656699999998520013577878999998578102579999999999853
Q gi|254780528|r 189 LLEITQN-EVGERAFGYIRAYVTQFHHSIYKDHFISVLLRFFLHGQLKLPDEDIVFTISFFSLEEQRAIYLKIAQNSVIS 267 (396)
Q Consensus 189 si~la~~-g~~~k~~~~a~~Y~rRf~~S~YA~~F~~~f~~~~v~~~~~~~~~~l~~ils~~d~~~q~~lYL~IAR~Ali~ 267 (396)
T Consensus 191 ~i~la~~~g~~~r~~~~a~~Y~rRf~~S~Ya~~F~~~F~~~vv~~~~~~~~~~l~~ils~~d~~~qr~lYL~IAR~A~i~ 270 (416)
T PRK12798 191 SLFIAAQLGDADKFEALSRNYLRRFRHSPYAGNFAQRFVLAVVRLSDRIRDERLVEILSEMDPESQRELYLRIARAALID 270 (416)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHC
T ss_conf 76999863767899999999999850680067899999999987403442879999998449687899999999999870
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 96479999999999631578886556899999997501789899999984399788897539999999999998530456
Q gi|254780528|r 268 GKRKIGFLAIKQLKRIIDRLDYKDLATIQLYENILNIPFVDIMSLQRSTCNIPYYSLMEQDRYLKKASEIIMSEIGKSLI 347 (396)
Q Consensus 268 G~~~lA~~As~rA~~L~~~~~~~~~~ra~LY~aaa~i~s~d~~~a~~~L~~Id~~~L~~~Dr~L~~AA~~ia~~I~r~~~ 347 (396)
T Consensus 271 Gk~~~a~~As~rA~~La~~-~~~~~~~A~LY~~aa~v~s~~~~~al~~L~~I~~~~L~~~Dr~Ll~AA~~iA~~V~r~p~ 349 (416)
T PRK12798 271 GKTELARFAAERALKLAAE-DSAEATRARLYRAAALVASDDADSALEELSQIDRAKLSERDRALLDAALSVARQVRRPPD 349 (416)
T ss_pred CHHHHHHHHHHHHHHHCCC-CCCCHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHCCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 4289999999999974567-887507999999987379876999999986699654790239999999999997507999
Q ss_pred CCCCCCCC-----------------CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 76744466-----------------22445444534566543057678978999999999864149
Q gi|254780528|r 348 DIDFEHIQ-----------------KDLLLDKKEPRHTNVSMGIESFIKKNRSQIESIDVLLAEAR 396 (396)
Q Consensus 348 ~a~~~~~q-----------------~~~~~~~~~~~~~~~~~~~~~~v~~ar~~l~eiD~LL~~~r 396 (396)
T Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fi~~arskL~eID~lL~~~~ 415 (416)
T PRK12798 350 ASSLAQASAPSTSRPRPTVADAAALEAQQGVAFTSARTSSDPDLQAFIARARSKLDEIDALLGKTG 415 (416)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 986222457566787556676200112345555433688770199999973877999999986536