Query gi|254780528|ref|YP_003064941.1| chemotaxis protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 396
No_of_seqs 40 out of 42
Neff 4.5
Searched_HMMs 23785
Date Tue May 31 20:46:03 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780528.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xev_A YBGF; tetratricopeptide 85.4 1.6 6.6E-05 21.0 11.9 111 115-225 7-119 (129)
2 2cwb_A Chimera of immunoglobul 64.3 1.9 8E-05 20.5 1.1 15 81-95 94-108 (108)
3 3mkr_A Coatomer subunit epsilo 34.0 19 0.00081 14.5 16.4 128 110-284 101-230 (291)
4 3mv2_B Coatomer subunit epsilo 31.4 21 0.00089 14.2 11.7 176 107-286 63-243 (310)
5 3bee_A Putative YFRE protein; 30.2 22 0.00094 14.1 5.7 54 83-137 12-70 (93)
6 1vej_A Riken cDNA 4931431F19; 29.0 18 0.00077 14.6 1.5 16 80-95 56-71 (74)
7 3dee_A Putative regulatory pro 27.3 25 0.0011 13.8 6.2 50 184-233 45-96 (249)
8 3k6g_A Telomeric repeat-bindin 26.1 26 0.0011 13.7 2.0 47 52-98 12-58 (111)
9 1ntc_A Protein (nitrogen regul 24.6 28 0.0012 13.5 4.3 55 80-140 26-80 (91)
10 2xcb_A PCRH, regulatory protei 23.5 30 0.0012 13.4 10.0 108 109-220 17-124 (142)
11 2klz_A Ataxin-3; UIM, ubiquiti 22.4 26 0.0011 13.7 1.2 14 182-195 26-39 (52)
No 1
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=85.39 E-value=1.6 Score=21.02 Aligned_cols=111 Identities=14% Similarity=-0.000 Sum_probs=71.0
Q ss_pred HHHHHHHHCCCHHHHHHHHCCCCHHCCCCCCCHHHHHHHH-HHHHHCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHH
Q ss_conf 9999997269879999983126710036100013888766-66432198999999999999678-529999987767887
Q gi|254780528|r 115 VYALKKYFSGQLEESSKELSKIKDKDNTRGIVPYLHLLIG-RAMMPFSSQQAVHFFDYVRLTSP-GTFLEEIALRNLLEI 192 (396)
Q Consensus 115 ~~g~laY~~Gr~~~a~~~L~~i~~~~lp~~lg~~laLv~a-~l~~~~dp~~Al~llD~aRLlaP-GTLvEEAALRRsi~l 192 (396)
-.|...+-.|+-.+|.+.|..+...+-+....+....-.| ......+...|+..|..+--..| +..+.++=++.....
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~i~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~a~~~la~~~ 86 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 99999999789999999999999888598468999999999999750099999999999987899806899999999999
Q ss_pred HHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 522525899999999999720484656699999
Q gi|254780528|r 193 TQNEVGERAFGYIRAYVTQFHHSIYKDHFISVL 225 (396)
Q Consensus 193 a~~g~~~k~~~~a~~Y~rRf~~S~YA~~F~~~f 225 (396)
...|+.++...+-++++.+|+.|+++..-...+
T Consensus 87 ~~~~~~~~A~~~~~~~~~~yP~s~~a~~a~~~L 119 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQYPGSDAARVAQERL 119 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 984999999999999998881999999999999
No 2
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=64.32 E-value=1.9 Score=20.54 Aligned_cols=15 Identities=13% Similarity=0.060 Sum_probs=10.2
Q ss_pred HHHHHHHHHHCCCCH
Q ss_conf 379999989748988
Q gi|254780528|r 81 NIDAVWIYTIISQDL 95 (396)
Q Consensus 81 Nv~Aa~iY~lSGG~P 95 (396)
||.+|+-++||||+|
T Consensus 94 dV~~AIe~Ll~gg~p 108 (108)
T 2cwb_A 94 DIQAALELIFAGGAP 108 (108)
T ss_dssp CHHHHHHHHHHTSCC
T ss_pred CHHHHHHHHHCCCCC
T ss_conf 899999999707999
No 3
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=33.97 E-value=19 Score=14.51 Aligned_cols=128 Identities=6% Similarity=-0.007 Sum_probs=59.9
Q ss_pred CCHHHHHHHHHHHCCCHHHHHHHHCCCCHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 32699999999726987999998312671003610001388876666432198999999999999678529999987767
Q gi|254780528|r 110 FDIAIVYALKKYFSGQLEESSKELSKIKDKDNTRGIVPYLHLLIGRAMMPFSSQQAVHFFDYVRLTSPGTFLEEIALRNL 189 (396)
Q Consensus 110 ~d~~L~~g~laY~~Gr~~~a~~~L~~i~~~~lp~~lg~~laLv~a~l~~~~dp~~Al~llD~aRLlaPGTLvEEAALRRs 189 (396)
....+..|..-+..|+..++.+.+..... +-++..++. ..+...++..|+..|..+.-..|....-.. ...
T Consensus 101 ~~~~~~~a~~~~~~~~~~~Al~~~~~~~~------~~~~~~~~~-~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~--~~~ 171 (291)
T 3mkr_A 101 TTFLLMAASIYFYDQNPDAALRTLHQGDS------LECMAMTVQ-ILLKLDRLDLARKELKKMQDQDEDATLTQL--ATA 171 (291)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHTTCCS------HHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHCTTCHHHHH--HHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHCCCC------CCHHHHHHH-HHHHCCCHHHHHHHHHHHHHHCCCCHHHHH--HHH
T ss_conf 99999999999987999999998745366------555899999-999869988899999999986425779999--983
Q ss_pred HH-HHHC-CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
Q ss_conf 88-7522-525899999999999720484656699999998520013577878999998578102579999999999853
Q gi|254780528|r 190 LE-ITQN-EVGERAFGYIRAYVTQFHHSIYKDHFISVLLRFFLHGQLKLPDEDIVFTISFFSLEEQRAIYLKIAQNSVIS 267 (396)
Q Consensus 190 i~-la~~-g~~~k~~~~a~~Y~rRf~~S~YA~~F~~~f~~~~v~~~~~~~~~~l~~ils~~d~~~q~~lYL~IAR~Ali~ 267 (396)
+. +... ++.++...+.......+..++ .++...+..-...
T Consensus 172 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~--------------------------------------~~~~~la~~~~~~ 213 (291)
T 3mkr_A 172 WVSLAAGGEKLQDAYYIFQEMADKCSPTL--------------------------------------LLLNGQAACHMAQ 213 (291)
T ss_dssp HHHHHHCTTHHHHHHHHHHHHHHHSCCCH--------------------------------------HHHHHHHHHHHHT
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHCCCH--------------------------------------HHHHHHHHHHHHC
T ss_conf 57775054239999998888887501469--------------------------------------9998899999981
Q ss_pred CCHHHHHHHHHHHHHHC
Q ss_conf 96479999999999631
Q gi|254780528|r 268 GKRKIGFLAIKQLKRII 284 (396)
Q Consensus 268 G~~~lA~~As~rA~~L~ 284 (396)
|+.+-|...-++++.+-
T Consensus 214 g~~~~A~~~~~~al~~~ 230 (291)
T 3mkr_A 214 GRWEAAEGVLQEALDKD 230 (291)
T ss_dssp TCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHC
T ss_conf 98899999999999868
No 4
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=31.38 E-value=21 Score=14.25 Aligned_cols=176 Identities=10% Similarity=-0.071 Sum_probs=101.3
Q ss_pred CCCCCHHHHHHHHHHHCCCHHHHHHHHCCCCHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 98432699999999726987999998312671003610001388876666432198999999999999678529999987
Q gi|254780528|r 107 KGYFDIAIVYALKKYFSGQLEESSKELSKIKDKDNTRGIVPYLHLLIGRAMMPFSSQQAVHFFDYVRLTSPGTFLEEIAL 186 (396)
Q Consensus 107 ~~~~d~~L~~g~laY~~Gr~~~a~~~L~~i~~~~lp~~lg~~laLv~a~l~~~~dp~~Al~llD~aRLlaPGTLvEEAAL 186 (396)
....+..+..+..-|..|+..++...+..+-. .++.-.-.+.+..-......+..+|+..|..+--.-|..--.++-.
T Consensus 63 ~~~~~~~~~~~~~l~~~~~~~~A~~~~~~~l~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 140 (310)
T 3mv2_B 63 SQDPTSKLGKVLDLYVQFLDTKNIEELENLLK--DKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLL 140 (310)
T ss_dssp CCCSSSTTHHHHHHHHHHHTTTCCHHHHHTTT--TSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf 67763599999999998725889999999875--0999999999999999984873889999999986387632299999
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHH--HHHHHHHHHCCCCCCHHH---HHHHHHHCCCHHHHHHHHHHH
Q ss_conf 767887522525899999999999720484656699--999998520013577878---999998578102579999999
Q gi|254780528|r 187 RNLLEITQNEVGERAFGYIRAYVTQFHHSIYKDHFI--SVLLRFFLHGQLKLPDED---IVFTISFFSLEEQRAIYLKIA 261 (396)
Q Consensus 187 RRsi~la~~g~~~k~~~~a~~Y~rRf~~S~YA~~F~--~~f~~~~v~~~~~~~~~~---l~~ils~~d~~~q~~lYL~IA 261 (396)
-........|..++...+-.+.++....++-..... .......-........+. +..-+...++ .-..|..++
T Consensus 141 ~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~A~~~~~~l~~~~~--~~~~~~~la 218 (310)
T 3mv2_B 141 LAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFP--TWKTQLGLL 218 (310)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSC--SHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CHHHHHHHH
T ss_conf 999999985999999999999986190342201499999999999999870049999999999886499--799999999
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 9998539647999999999963157
Q gi|254780528|r 262 QNSVISGKRKIGFLAIKQLKRIIDR 286 (396)
Q Consensus 262 R~Ali~G~~~lA~~As~rA~~L~~~ 286 (396)
..-.-.|+.+-|.-.-.+++.+-..
T Consensus 219 ~~~~~~g~~~eA~~~~~~al~~~~~ 243 (310)
T 3mv2_B 219 NLHLQQRNIAEAQGIVELLLSDYYS 243 (310)
T ss_dssp HHHHHHTCHHHHHHHHHHHHSHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCC
T ss_conf 9999869989999999999862902
No 5
>3bee_A Putative YFRE protein; putaive YFRE protein, structural genomics, PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=30.22 E-value=22 Score=14.13 Aligned_cols=54 Identities=11% Similarity=0.097 Sum_probs=33.5
Q ss_pred HHHHHHHHCCCC--HH---HHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHCCCC
Q ss_conf 999998974898--89---99999861889843269999999972698799999831267
Q gi|254780528|r 83 DAVWIYTIISQD--LS---VVDDLIAKDTKGYFDIAIVYALKKYFSGQLEESSKELSKIK 137 (396)
Q Consensus 83 ~Aa~iY~lSGG~--P~---~lr~l~~~d~~~~~d~~L~~g~laY~~Gr~~~a~~~L~~i~ 137 (396)
.|-..|..+||. ++ .+++.+..++. +......-|..+|-.|+-.+|.+.|..+-
T Consensus 12 ~A~al~~~~~~~~t~ea~~~l~~aL~~~P~-~~~al~~lg~~~~~~g~y~~Ai~~w~~lL 70 (93)
T 3bee_A 12 KATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLL 70 (93)
T ss_dssp HHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 999999995998899999999999977869-89999999999998689999999999998
No 6
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=29.01 E-value=18 Score=14.63 Aligned_cols=16 Identities=13% Similarity=-0.008 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHCCCCH
Q ss_conf 3379999989748988
Q gi|254780528|r 80 RNIDAVWIYTIISQDL 95 (396)
Q Consensus 80 rNv~Aa~iY~lSGG~P 95 (396)
-||.+||-|++++++|
T Consensus 56 Gdv~~Ai~~Ll~~~~p 71 (74)
T 1vej_A 56 GDIHAAIEMLLGASGP 71 (74)
T ss_dssp SCHHHHHHHHHTCCCC
T ss_pred CCHHHHHHHHHHCCCC
T ss_conf 9899999999965899
No 7
>3dee_A Putative regulatory protein; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.10A {Neisseria gonorrhoeae fa 1090}
Probab=27.32 E-value=25 Score=13.82 Aligned_cols=50 Identities=8% Similarity=0.040 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHCCC-HHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHCC
Q ss_conf 98776788752252-5899999999999720-48465669999999852001
Q gi|254780528|r 184 IALRNLLEITQNEV-GERAFGYIRAYVTQFH-HSIYKDHFISVLLRFFLHGQ 233 (396)
Q Consensus 184 AALRRsi~la~~g~-~~k~~~~a~~Y~rRf~-~S~YA~~F~~~f~~~~v~~~ 233 (396)
.+|+...+++..-. .+.|..+++.|++.+. +|||-.++.+.|+.++-.+.
T Consensus 45 ~~L~~~FP~~~~~lG~~~f~~la~~fi~~~p~~sp~l~~~g~eF~~fL~~~~ 96 (249)
T 3dee_A 45 SFIDRCYTETRQYFDSKEWSRLKEGFVRDARAQTPYFQEIPGEFLQYCQSLP 96 (249)
T ss_dssp HHHHHHTTTGGGGSCHHHHHHHHHHHHHSGGGGCSCGGGHHHHHHHHHHHTT
T ss_pred HHHHHHCHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 9999758299998199999999999998679999469999999899998178
No 8
>3k6g_A Telomeric repeat-binding factor 2-interacting Pro; helix, chromosomal protein, nucleus, phosphoprotein, telomer cycle, DNA-binding, protein binding; 1.95A {Homo sapiens}
Probab=26.13 E-value=26 Score=13.69 Aligned_cols=47 Identities=11% Similarity=0.142 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHCCCCHHHH
Q ss_conf 99999999999998998616967605623379999989748988999
Q gi|254780528|r 52 SLQKKIPDIVKETGVQLRATHMDVFVDNRNIDAVWIYTIISQDLSVV 98 (396)
Q Consensus 52 sA~~~q~~Ll~~i~~~l~~a~~~vw~d~rNv~Aa~iY~lSGG~P~~l 98 (396)
.+.+.+..+++++.-+|.+......+|.-.+.|+-.|+.+|-.|..-
T Consensus 12 ~~~~~i~~~MeEF~ldL~tVTqAlLKnSGel~at~~fL~tG~r~dgy 58 (111)
T 3k6g_A 12 AAIKIIRQLMEKFNLDLSTVTQAFLKNSGELEATSAFLASGQRADGY 58 (111)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHHSSCTTSC
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCC
T ss_conf 99999999999977509999999997253589999999808789998
No 9
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=24.61 E-value=28 Score=13.52 Aligned_cols=55 Identities=7% Similarity=0.026 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHCCCCHHC
Q ss_conf 3379999989748988999999861889843269999999972698799999831267100
Q gi|254780528|r 80 RNIDAVWIYTIISQDLSVVDDLIAKDTKGYFDIAIVYALKKYFSGQLEESSKELSKIKDKD 140 (396)
Q Consensus 80 rNv~Aa~iY~lSGG~P~~lr~l~~~d~~~~~d~~L~~g~laY~~Gr~~~a~~~L~~i~~~~ 140 (396)
..++..+--.++.|++..++.++ .++++.++.-+++...|...+|.+.|. |...+
T Consensus 26 ~~l~~~~~~~l~~g~~~~l~~~~-----~~~Er~lI~~aL~~~~Gn~~~AA~~LG-I~R~T 80 (91)
T 1ntc_A 26 TLLAQWADRALRSGHQNLLSEAQ-----PELERTLLTTALRHTQGHKQEAARLLG-WGAAT 80 (91)
T ss_dssp HHHHHHHHHHHTTTCCSHHHHHH-----HHHHHHHHHHHHHHTTTCTTHHHHHTT-CCHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHC-CCHHH
T ss_conf 99999999998758930799999-----999999999999996895999999979-89999
No 10
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=23.48 E-value=30 Score=13.39 Aligned_cols=108 Identities=10% Similarity=-0.035 Sum_probs=51.2
Q ss_pred CCCHHHHHHHHHHHCCCHHHHHHHHCCCCHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 43269999999972698799999831267100361000138887666643219899999999999967852999998776
Q gi|254780528|r 109 YFDIAIVYALKKYFSGQLEESSKELSKIKDKDNTRGIVPYLHLLIGRAMMPFSSQQAVHFFDYVRLTSPGTFLEEIALRN 188 (396)
Q Consensus 109 ~~d~~L~~g~laY~~Gr~~~a~~~L~~i~~~~lp~~lg~~laLv~a~l~~~~dp~~Al~llD~aRLlaPGTLvEEAALRR 188 (396)
+++.-.-.|...+-.|+-.+|.+.+...-. .++.-..+.....-......+...|+..|+.+--..|+. .++=.++
T Consensus 17 ~~~~~~~~g~~~~~~g~~~~A~~~~~~a~~--~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~--~~~~~~l 92 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCM--LDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINE--PRFPFHA 92 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--THHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC--HHHHHHH
T ss_conf 599999999999986999999999999998--399879999997399999489899999999998744388--9999976
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHH
Q ss_conf 78875225258999999999997204846566
Q gi|254780528|r 189 LLEITQNEVGERAFGYIRAYVTQFHHSIYKDH 220 (396)
Q Consensus 189 si~la~~g~~~k~~~~a~~Y~rRf~~S~YA~~ 220 (396)
....-.-|+.++...+....+.-+..+|....
T Consensus 93 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 124 (142)
T 2xcb_A 93 AECHLQLGDLDGAESGFYSARALAAAQPAHEA 124 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 79998858999999999999873999978999
No 11
>2klz_A Ataxin-3; UIM, ubiquitin-binding, hydrolase, neurodegenerati nucleus, phosphoprotein, spinocerebellar ataxia, transcript transcription regulation; NMR {Homo sapiens}
Probab=22.39 E-value=26 Score=13.70 Aligned_cols=14 Identities=29% Similarity=0.534 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHC
Q ss_conf 99987767887522
Q gi|254780528|r 182 EEIALRNLLEITQN 195 (396)
Q Consensus 182 EEAALRRsi~la~~ 195 (396)
|||-|||-|.+...
T Consensus 26 EeaDLrRAIqlSMQ 39 (52)
T 2klz_A 26 EEADLRRAIQLSMQ 39 (52)
T ss_dssp SHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHC
T ss_conf 68889999998721
Done!