BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254780528|ref|YP_003064941.1| chemotaxis protein [Candidatus
Liberibacter asiaticus str. psy62]
(396 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
>gi|241203120|ref|YP_002974216.1| chemotaxis protein [Rhizobium leguminosarum bv. trifolii WSM1325]
gi|240857010|gb|ACS54677.1| chemotaxis motility protein [Rhizobium leguminosarum bv. trifolii
WSM1325]
Length = 431
Score = 427 bits (1097), Expect = e-117, Method: Composition-based stats.
Identities = 103/423 (24%), Positives = 185/423 (43%), Gaps = 30/423 (7%)
Query: 3 QKYLICTMMVAMDVFFSFATDQDLVRTIVPYQCVRSLQRALDEAMRGDISLQKKIPDIVK 62
Q + + + + + + + PY+ +RSLQ D + GD S + ++
Sbjct: 5 QHRYVGFVALGLAMLSPAGGNAQDPDDLAPYKMLRSLQFVQDSVVSGDHSAGEMQRFMLG 64
Query: 63 ETGVQLRATHMDVFVDNRNIDAVWIYTIISQDLSVVDDLIAKDTKGYFDIAIVYALKKYF 122
+LR F D+RN+DA IY + + ++ LIA D GYFD + L+KY
Sbjct: 65 TIDERLRTVDPSTFDDDRNVDAALIYAMSGGNPQTLEYLIAHDVNGYFDNRVTDVLRKYL 124
Query: 123 SGQLEESSKELSKIKDKDNTRGIVPYLHLLIGRAMMPFSSQQAVHFFDYVRLTSPGTFLE 182
SG+ +K L + + + I PYL L+ G ++ A+ +D RL +PGT +E
Sbjct: 125 SGKGLLVAKTLEETAREYRDKKIGPYLALIGGNVLIATKPTDALDLYDQARLAAPGTIVE 184
Query: 183 EIALRNLLEITQN-EVGERAFGYIRAYVTQFHHSIYKDHFISVLLRFFLHGQLKLPDEDI 241
E ALR + I + + +R Y + YV +F HS Y F + + + + +D+
Sbjct: 185 EAALRRSVAICVDKGMLDRGMAYSQRYVRRFLHSPYASQFADLFVTLVVGHDHDVKPQDV 244
Query: 242 VFTISFFSLEEQRAIYLKIAQNSVISGKRKIGFLAIKQLKRIIDRLDYKDLATIQLYENI 301
+ +SF QR +YL+IA+ + ISGK ++ +A+ +++ + D + Y +
Sbjct: 245 IDILSFMDAPRQREVYLRIARAAAISGKPELARMAVGRVQSLGAGTDNPFGSLADFYGGM 304
Query: 302 LNIPFVDIMSLQRSTCNIPYYSLMEQDRYLKKASEIIMSEIGKSLIDIDFEHI------- 354
+P DI ++ I +L +D+ L++A+ + +I ++
Sbjct: 305 AGLPTEDIDQAAKNVSGIDGNALSPRDQALQEAARSVADQILRAPDPASLTQASDPNTDH 364
Query: 355 -------------QKDLLLDKKEPRHTNVSMGIES---------FIKKNRSQIESIDVLL 392
Q EP V+ +S F+ NRS+++ ID LL
Sbjct: 365 QEITSEKAAAIATQPGAPGALPEPVPGGVASTGQSQDTDPSFNAFVTTNRSKLDEIDGLL 424
Query: 393 AEA 395
A+
Sbjct: 425 AQE 427
>gi|116250496|ref|YP_766334.1| chemotaxis protein [Rhizobium leguminosarum bv. viciae 3841]
gi|115255144|emb|CAK06218.1| putative chemotaxis MotC protein precursor (motility protein c)
[Rhizobium leguminosarum bv. viciae 3841]
Length = 431
Score = 424 bits (1089), Expect = e-116, Method: Composition-based stats.
Identities = 104/423 (24%), Positives = 187/423 (44%), Gaps = 30/423 (7%)
Query: 3 QKYLICTMMVAMDVFFSFATDQDLVRTIVPYQCVRSLQRALDEAMRGDISLQKKIPDIVK 62
Q + + + + + A + + PY+ +RSLQ D + GD S + ++
Sbjct: 5 QHRYVGFVALGLAMLSPAAANAQDSDDLAPYKMLRSLQFVQDSVVTGDHSAGEMQRFMLG 64
Query: 63 ETGVQLRATHMDVFVDNRNIDAVWIYTIISQDLSVVDDLIAKDTKGYFDIAIVYALKKYF 122
+LR +F D+RN+DA IYT+ + ++ LIA D GYFD + L+KY
Sbjct: 65 TIDTRLRTVEPSIFDDDRNVDAALIYTMSGGNPQTLEYLIAHDVNGYFDNRVTDVLRKYL 124
Query: 123 SGQLEESSKELSKIKDKDNTRGIVPYLHLLIGRAMMPFSSQQAVHFFDYVRLTSPGTFLE 182
SG+ +K L + + + I PYL L+ G ++ A+ +D RL +PGT +E
Sbjct: 125 SGKGLLVAKTLQETAREYRDKKIGPYLALIGGNVLIATKPTDALDLYDQARLAAPGTIVE 184
Query: 183 EIALRNLLEITQN-EVGERAFGYIRAYVTQFHHSIYKDHFISVLLRFFLHGQLKLPDEDI 241
E ALR + I + + +R Y + YV +F HS Y F + + + + +D+
Sbjct: 185 EAALRRSVAICVDKGMLDRGMAYSQRYVRRFLHSPYASQFADLFVTLVVGHDHDVKPQDV 244
Query: 242 VFTISFFSLEEQRAIYLKIAQNSVISGKRKIGFLAIKQLKRIIDRLDYKDLATIQLYENI 301
+ +SF QR +YL+IA+ + ISGK ++ +A+ +++ + D Y +
Sbjct: 245 IDILSFMDAPRQREVYLRIARAAAISGKPELARMAVGRVQSLGGGTDNAFGPLADFYGGM 304
Query: 302 LNIPFVDIMSLQRSTCNIPYYSLMEQDRYLKKASEIIMSEIGKSLIDIDFEHI------- 354
+P DI ++ I +L +D+ L++A+ + +I ++
Sbjct: 305 AGLPTEDIDQAAKNVSGIDGNALSRRDQALQEAARSVAEQILRAPDPASLTQASNLNTDH 364
Query: 355 -------------QKDLLLDKKEPRHTNVSMGIES---------FIKKNRSQIESIDVLL 392
Q EP V+ +S F+ +RS+++ ID LL
Sbjct: 365 QEITSEKAAAIAMQPGAPGALSEPVPGGVASTGQSQDTDPSFNAFVTTSRSKLDEIDGLL 424
Query: 393 AEA 395
A+
Sbjct: 425 AQE 427
>gi|218461677|ref|ZP_03501768.1| chemotaxis protein [Rhizobium etli Kim 5]
Length = 442
Score = 417 bits (1072), Expect = e-114, Method: Composition-based stats.
Identities = 103/422 (24%), Positives = 186/422 (44%), Gaps = 30/422 (7%)
Query: 3 QKYLICTMMVAMDVFFSFATDQDLVRTIVPYQCVRSLQRALDEAMRGDISLQKKIPDIVK 62
Q M + + + A + PY+ +RSLQ D + GD S + ++
Sbjct: 5 QHRYFGFMALGLAMLSPAAGHAQDPDDLSPYKMLRSLQFVQDSVVAGDHSAGEMQRFMLG 64
Query: 63 ETGVQLRATHMDVFVDNRNIDAVWIYTIISQDLSVVDDLIAKDTKGYFDIAIVYALKKYF 122
+LR ++ D+RN+DA IYT+ + ++ LIA D GYFD + L+KY
Sbjct: 65 TIDERLRTADTSIYDDDRNVDAALIYTMSGGNPQTLEYLIAHDVNGYFDNRVTEVLRKYL 124
Query: 123 SGQLEESSKELSKIKDKDNTRGIVPYLHLLIGRAMMPFSSQQAVHFFDYVRLTSPGTFLE 182
SG+ ++ L + + + I PYL L+ G ++ A++ +D RL +PGT +E
Sbjct: 125 SGKGLLVARTLEETAREYRDKKIGPYLALIGGNVLIATKPTDALNLYDQARLAAPGTIVE 184
Query: 183 EIALRNLLEITQN-EVGERAFGYIRAYVTQFHHSIYKDHFISVLLRFFLHGQLKLPDEDI 241
E ALR + I + + +R Y + Y +F HS Y F + ++ + + +D+
Sbjct: 185 EAALRRSVAICVDKGMLDRGLAYSQRYARRFLHSPYASQFADLFVKLVVAHDRDVKPQDV 244
Query: 242 VFTISFFSLEEQRAIYLKIAQNSVISGKRKIGFLAIKQLKRIIDRLDYKDLATIQLYENI 301
V +SF QR +YL+IA+ + ISGK ++ +A+++++ + D Y +
Sbjct: 245 VDILSFMDAPRQREVYLRIARAAAISGKPELARMAVERVQSLGAGTDNAFGPLADFYGGM 304
Query: 302 LNIPFVDIMSLQRSTCNIPYYSLMEQDRYLKKASEIIMSEIGKSLIDIDFEHI------- 354
+P DI ++ I +L +D+ L+ A+ + +I ++
Sbjct: 305 AGLPTQDIDQAAKNVSGIDGKALSPRDQALQAAARSVAEQILRAPDPASLTQASDPNTSH 364
Query: 355 -------------QKDLLLDKKEPRHTNVSMGIES---------FIKKNRSQIESIDVLL 392
Q EP V+ +S F+ +RS+++ ID LL
Sbjct: 365 QEITSDKAAANAMQPGAPGAHPEPVPGGVASTGQSQDTDPSFNAFVTTSRSKLDEIDGLL 424
Query: 393 AE 394
A+
Sbjct: 425 AQ 426
>gi|209547942|ref|YP_002279859.1| chemotaxis protein [Rhizobium leguminosarum bv. trifolii WSM2304]
gi|209533698|gb|ACI53633.1| chemotaxis motility protein [Rhizobium leguminosarum bv. trifolii
WSM2304]
Length = 431
Score = 412 bits (1058), Expect = e-113, Method: Composition-based stats.
Identities = 102/423 (24%), Positives = 188/423 (44%), Gaps = 30/423 (7%)
Query: 3 QKYLICTMMVAMDVFFSFATDQDLVRTIVPYQCVRSLQRALDEAMRGDISLQKKIPDIVK 62
Q + + + + + A + PY+ +RSLQ D + GD S + ++
Sbjct: 5 QHRYVGFVALGLAMLSPAAAKAQDPDDLAPYKMLRSLQFVQDSVVSGDHSAGEMQRFMLG 64
Query: 63 ETGVQLRATHMDVFVDNRNIDAVWIYTIISQDLSVVDDLIAKDTKGYFDIAIVYALKKYF 122
+LR+ VF D+RN+DA IY + + ++ LIA D G+FD + L+KY
Sbjct: 65 TIDERLRSVDTSVFDDDRNVDAALIYAMSGGNPQTLEYLIAHDVNGHFDNRVTDVLRKYL 124
Query: 123 SGQLEESSKELSKIKDKDNTRGIVPYLHLLIGRAMMPFSSQQAVHFFDYVRLTSPGTFLE 182
SG+ +K L + + + I PYL L+ G ++ + A+ +D RL +PGT +E
Sbjct: 125 SGKGLLVAKTLEETAREYRDKKIGPYLALIGGNVLIATNPTDALDLYDQARLAAPGTIVE 184
Query: 183 EIALRNLLEITQN-EVGERAFGYIRAYVTQFHHSIYKDHFISVLLRFFLHGQLKLPDEDI 241
E ALR + I + + +R Y + Y+ +F HS Y F + + + + +D+
Sbjct: 185 EAALRRSVAICVDKGMLDRGMAYSQRYIRRFLHSPYASQFADLFVTLVVGHDHDVKPQDV 244
Query: 242 VFTISFFSLEEQRAIYLKIAQNSVISGKRKIGFLAIKQLKRIIDRLDYKDLATIQLYENI 301
+ +SF QR +YL+IA+ + I+GK ++ +A+++++ + D Y +
Sbjct: 245 IDILSFMDAPRQREVYLRIARAAAIAGKPQLAHMAVERVQSLGAGTDNAFGPLADFYGGM 304
Query: 302 LNIPFVDIMSLQRSTCNIPYYSLMEQDRYLKKASEIIMSEIGKSLIDIDFEHI------- 354
+P DI ++ I +L +D+ L++A+ + +I ++
Sbjct: 305 AGLPTEDIDQAAKNVSGIAGNTLSPRDQALQEAARSVAEQILRAPDPASLTQASDPNTSD 364
Query: 355 -------------QKDLLLDKKEPRHTNVSMGIES---------FIKKNRSQIESIDVLL 392
Q EP V+ +S F+ NRS+++ ID LL
Sbjct: 365 QEITSEKAAAIAPQPGAPGALPEPVPGGVASTGQSQGTDPSFNAFVTTNRSKLDEIDGLL 424
Query: 393 AEA 395
A+
Sbjct: 425 AQE 427
>gi|86356326|ref|YP_468218.1| chemotaxis protein [Rhizobium etli CFN 42]
gi|86280428|gb|ABC89491.1| chemotaxis motility protein [Rhizobium etli CFN 42]
Length = 431
Score = 411 bits (1057), Expect = e-113, Method: Composition-based stats.
Identities = 104/423 (24%), Positives = 185/423 (43%), Gaps = 30/423 (7%)
Query: 3 QKYLICTMMVAMDVFFSFATDQDLVRTIVPYQCVRSLQRALDEAMRGDISLQKKIPDIVK 62
Q + M + + + A + PY+ +RSLQ D + GD S + ++
Sbjct: 5 QHRYVGFMALGLAMLSPAAGKAQDPDDLAPYKMLRSLQFVQDSVVAGDHSAGEMQRFMLG 64
Query: 63 ETGVQLRATHMDVFVDNRNIDAVWIYTIISQDLSVVDDLIAKDTKGYFDIAIVYALKKYF 122
+LR +F D+RN+DA IYT+ + ++ LIA D GYFD + L+KY
Sbjct: 65 TIDERLRTADTKIFDDDRNVDAALIYTMSGGNPQTLEYLIAHDVNGYFDNRVTDVLRKYL 124
Query: 123 SGQLEESSKELSKIKDKDNTRGIVPYLHLLIGRAMMPFSSQQAVHFFDYVRLTSPGTFLE 182
+G+ +K L + + + I PYL L+ G M+ A+ +D RL +PGT +E
Sbjct: 125 TGKGLLVAKTLEETAREYRDKKIGPYLALIGGNVMIATKPTDALDLYDQARLAAPGTIVE 184
Query: 183 EIALRNLLEITQN-EVGERAFGYIRAYVTQFHHSIYKDHFISVLLRFFLHGQLKLPDEDI 241
E ALR L I + + ++ Y + Y +F HS Y F + ++ + + +D+
Sbjct: 185 EAALRRSLAICVDKGMLDKGLAYSQRYARRFLHSPYASQFADLFVKLVVAHDHDVKPQDV 244
Query: 242 VFTISFFSLEEQRAIYLKIAQNSVISGKRKIGFLAIKQLKRIIDRLDYKDLATIQLYENI 301
V +SF QR +YL+IA+ + I+GK ++ +A++ ++ + D Y +
Sbjct: 245 VDILSFMDAPRQREVYLRIARAAAIAGKPELARMAVEHVQLLGAGTDNAFGPLADFYGGM 304
Query: 302 LNIPFVDIMSLQRSTCNIPYYSLMEQDRYLKKASEIIMSEIGKSLIDIDFEHI------- 354
+P DI ++ I +L +D+ L+ A+ + +I ++
Sbjct: 305 AGLPTDDIDQAAKNVSGIDGEALSPRDQALQAAARSVAEQILRAPDPASLTQASNPNTSH 364
Query: 355 -------------QKDLLLDKKEPRHTNVSMGIES---------FIKKNRSQIESIDVLL 392
Q EP V+ +S F+ +RS+++ ID LL
Sbjct: 365 QEITSEKAAAIATQPGTPGAPPEPVPGGVASTGQSQDTDSSFNAFVTTSRSKLDEIDGLL 424
Query: 393 AEA 395
A+
Sbjct: 425 AQE 427
>gi|254780528|ref|YP_003064941.1| chemotaxis protein [Candidatus Liberibacter asiaticus str. psy62]
gi|254040205|gb|ACT57001.1| chemotaxis protein [Candidatus Liberibacter asiaticus str. psy62]
Length = 396
Score = 410 bits (1055), Expect = e-112, Method: Composition-based stats.
Identities = 396/396 (100%), Positives = 396/396 (100%)
Query: 1 MNQKYLICTMMVAMDVFFSFATDQDLVRTIVPYQCVRSLQRALDEAMRGDISLQKKIPDI 60
MNQKYLICTMMVAMDVFFSFATDQDLVRTIVPYQCVRSLQRALDEAMRGDISLQKKIPDI
Sbjct: 1 MNQKYLICTMMVAMDVFFSFATDQDLVRTIVPYQCVRSLQRALDEAMRGDISLQKKIPDI 60
Query: 61 VKETGVQLRATHMDVFVDNRNIDAVWIYTIISQDLSVVDDLIAKDTKGYFDIAIVYALKK 120
VKETGVQLRATHMDVFVDNRNIDAVWIYTIISQDLSVVDDLIAKDTKGYFDIAIVYALKK
Sbjct: 61 VKETGVQLRATHMDVFVDNRNIDAVWIYTIISQDLSVVDDLIAKDTKGYFDIAIVYALKK 120
Query: 121 YFSGQLEESSKELSKIKDKDNTRGIVPYLHLLIGRAMMPFSSQQAVHFFDYVRLTSPGTF 180
YFSGQLEESSKELSKIKDKDNTRGIVPYLHLLIGRAMMPFSSQQAVHFFDYVRLTSPGTF
Sbjct: 121 YFSGQLEESSKELSKIKDKDNTRGIVPYLHLLIGRAMMPFSSQQAVHFFDYVRLTSPGTF 180
Query: 181 LEEIALRNLLEITQNEVGERAFGYIRAYVTQFHHSIYKDHFISVLLRFFLHGQLKLPDED 240
LEEIALRNLLEITQNEVGERAFGYIRAYVTQFHHSIYKDHFISVLLRFFLHGQLKLPDED
Sbjct: 181 LEEIALRNLLEITQNEVGERAFGYIRAYVTQFHHSIYKDHFISVLLRFFLHGQLKLPDED 240
Query: 241 IVFTISFFSLEEQRAIYLKIAQNSVISGKRKIGFLAIKQLKRIIDRLDYKDLATIQLYEN 300
IVFTISFFSLEEQRAIYLKIAQNSVISGKRKIGFLAIKQLKRIIDRLDYKDLATIQLYEN
Sbjct: 241 IVFTISFFSLEEQRAIYLKIAQNSVISGKRKIGFLAIKQLKRIIDRLDYKDLATIQLYEN 300
Query: 301 ILNIPFVDIMSLQRSTCNIPYYSLMEQDRYLKKASEIIMSEIGKSLIDIDFEHIQKDLLL 360
ILNIPFVDIMSLQRSTCNIPYYSLMEQDRYLKKASEIIMSEIGKSLIDIDFEHIQKDLLL
Sbjct: 301 ILNIPFVDIMSLQRSTCNIPYYSLMEQDRYLKKASEIIMSEIGKSLIDIDFEHIQKDLLL 360
Query: 361 DKKEPRHTNVSMGIESFIKKNRSQIESIDVLLAEAR 396
DKKEPRHTNVSMGIESFIKKNRSQIESIDVLLAEAR
Sbjct: 361 DKKEPRHTNVSMGIESFIKKNRSQIESIDVLLAEAR 396
>gi|327193054|gb|EGE59966.1| chemotaxis motility protein [Rhizobium etli CNPAF512]
Length = 431
Score = 405 bits (1042), Expect = e-111, Method: Composition-based stats.
Identities = 102/423 (24%), Positives = 186/423 (43%), Gaps = 30/423 (7%)
Query: 3 QKYLICTMMVAMDVFFSFATDQDLVRTIVPYQCVRSLQRALDEAMRGDISLQKKIPDIVK 62
Q + M + + + A + + PY+ +RSLQ D + GD S + ++
Sbjct: 5 QHRYLGFMALGLAMLSPAAGNAQDPDDLSPYKMLRSLQFVQDSVVAGDHSAGEMQRFMLG 64
Query: 63 ETGVQLRATHMDVFVDNRNIDAVWIYTIISQDLSVVDDLIAKDTKGYFDIAIVYALKKYF 122
+LR ++ D+RN+DA IY + + ++ LIA D GYFD + L+KY
Sbjct: 65 TIDERLRTADTSIYDDDRNVDAALIYAMSGGNPQTLEYLIAHDVNGYFDNRVTDVLRKYL 124
Query: 123 SGQLEESSKELSKIKDKDNTRGIVPYLHLLIGRAMMPFSSQQAVHFFDYVRLTSPGTFLE 182
SG+ +K L + + + I PYL L+ G ++ A+ +D RL +PGT +E
Sbjct: 125 SGKGLLVAKTLEETAREYRDKKIGPYLALIGGNVLIATKPTDALDLYDQARLAAPGTIVE 184
Query: 183 EIALRNLLEITQN-EVGERAFGYIRAYVTQFHHSIYKDHFISVLLRFFLHGQLKLPDEDI 241
E ALR + I + + ++ Y + Y +F HS Y F + ++ + + +D+
Sbjct: 185 EAALRRSVAICVDKGLLDKGLAYSQRYARRFLHSPYASQFADLFVKLVVAHDRDVKPQDV 244
Query: 242 VFTISFFSLEEQRAIYLKIAQNSVISGKRKIGFLAIKQLKRIIDRLDYKDLATIQLYENI 301
V +SF QR +YL+IA+ + ISGK ++ +A+++++ + D Y +
Sbjct: 245 VDILSFMDAPRQREVYLRIARAAAISGKPELARMAVERVQSLGAGTDNAFGPLADFYGGM 304
Query: 302 LNIPFVDIMSLQRSTCNIPYYSLMEQDRYLKKASEIIMSEIGKSLIDIDFEHI------- 354
+P DI ++ I +L +D+ L+ A+ + +I ++
Sbjct: 305 AGLPTQDIDQAAKNVSGIDGNALSPRDQALQAAARSVAEQILRAPDPTSLTQASDPNTSH 364
Query: 355 -------------QKDLLLDKKEPRHTNVSMGIES---------FIKKNRSQIESIDVLL 392
Q EP V+ +S F+ +RS+++ ID LL
Sbjct: 365 QEITSEKAAAIAMQPGAPGAPPEPVPGGVASTGQSQDTDPSFNAFVTTSRSKLDEIDGLL 424
Query: 393 AEA 395
A+
Sbjct: 425 AQE 427
>gi|190890378|ref|YP_001976920.1| chemotaxis motility protein [Rhizobium etli CIAT 652]
gi|190695657|gb|ACE89742.1| chemotaxis motility protein [Rhizobium etli CIAT 652]
Length = 431
Score = 400 bits (1028), Expect = e-109, Method: Composition-based stats.
Identities = 100/423 (23%), Positives = 185/423 (43%), Gaps = 30/423 (7%)
Query: 3 QKYLICTMMVAMDVFFSFATDQDLVRTIVPYQCVRSLQRALDEAMRGDISLQKKIPDIVK 62
Q + + + + + A + + PY+ +RSLQ D + GD S + ++
Sbjct: 5 QHRYLGFIALGLAMLSPAAGNAQDPDDLSPYKMLRSLQFVQDSVVAGDHSAGEMQRFMLG 64
Query: 63 ETGVQLRATHMDVFVDNRNIDAVWIYTIISQDLSVVDDLIAKDTKGYFDIAIVYALKKYF 122
+LR ++ D+RN+DA IY + + ++ LIA D GYFD + L+KY
Sbjct: 65 TIDERLRTADTAIYDDDRNVDAALIYAMSGGNPQTLEYLIAHDVNGYFDNRVTDVLRKYL 124
Query: 123 SGQLEESSKELSKIKDKDNTRGIVPYLHLLIGRAMMPFSSQQAVHFFDYVRLTSPGTFLE 182
SG+ +K L + + + I PYL L+ G ++ A+ +D RL +PGT +E
Sbjct: 125 SGKGLLVAKTLEETAREYREKKIGPYLALIGGNVLIATKPTDALDLYDQARLAAPGTIVE 184
Query: 183 EIALRNLLEITQN-EVGERAFGYIRAYVTQFHHSIYKDHFISVLLRFFLHGQLKLPDEDI 241
E ALR + I + + ++ Y + Y +F HS Y F + ++ + + +D+
Sbjct: 185 EAALRRSVAICVDKGMLDKGLAYSQRYARRFLHSPYASQFADLFVKLVVAHDRDVKPQDV 244
Query: 242 VFTISFFSLEEQRAIYLKIAQNSVISGKRKIGFLAIKQLKRIIDRLDYKDLATIQLYENI 301
V +S QR +YL+IA+ + ISGK ++ +A+++++ + D Y +
Sbjct: 245 VDILSLMDAPRQREVYLRIARAAAISGKPELARMAVERVQSLGAGTDNAFGPLADFYGGM 304
Query: 302 LNIPFVDIMSLQRSTCNIPYYSLMEQDRYLKKASEIIMSEIGKSLIDIDFEHI------- 354
+P DI ++ I +L +D+ L+ A+ + +I ++
Sbjct: 305 AGLPTQDIDRAAKNVSGIDGNALSPRDQALQAAARSVAEQILRAPDPASLTQASDPNTSH 364
Query: 355 -------------QKDLLLDKKEPRHTNVSMGIES---------FIKKNRSQIESIDVLL 392
Q EP V+ +S F+ +RS+++ ID LL
Sbjct: 365 QEITSEKAAAIAMQPGAPGAPPEPVPGGVASTGQSQDTDPSFNAFVTTSRSKLDEIDGLL 424
Query: 393 AEA 395
A+
Sbjct: 425 AQE 427
>gi|82940570|emb|CAJ44301.1| putative Chemotaxis precursor (Motility protein C MotC) [Rhizobium
leguminosarum bv. viciae]
Length = 334
Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats.
Identities = 88/330 (26%), Positives = 156/330 (47%), Gaps = 1/330 (0%)
Query: 3 QKYLICTMMVAMDVFFSFATDQDLVRTIVPYQCVRSLQRALDEAMRGDISLQKKIPDIVK 62
Q + + + + + A + + PY+ +RSLQ D + GD S + ++
Sbjct: 5 QHRYVGFVALGLAMLSPAAGNAQDPDDLAPYKMLRSLQFVQDSVVSGDHSAGEMQRFMLG 64
Query: 63 ETGVQLRATHMDVFVDNRNIDAVWIYTIISQDLSVVDDLIAKDTKGYFDIAIVYALKKYF 122
+LR F D+RN+DA IY + + ++ LIA D GYFD + L+KY
Sbjct: 65 TIDERLRTVDPSTFDDDRNVDAALIYAMSGGNPQTLEYLIAHDVNGYFDNRVTDVLRKYL 124
Query: 123 SGQLEESSKELSKIKDKDNTRGIVPYLHLLIGRAMMPFSSQQAVHFFDYVRLTSPGTFLE 182
SG+ +K L + + + I PYL L+ G ++ A+ +D RL +PGT +E
Sbjct: 125 SGKGLLVAKTLEETAREYRDKKIGPYLALIGGNVLIATKPTDALDLYDQARLAAPGTIVE 184
Query: 183 EIALRNLLEITQN-EVGERAFGYIRAYVTQFHHSIYKDHFISVLLRFFLHGQLKLPDEDI 241
E ALR + I + + ++ Y + YV +F HS Y F + + + + +D+
Sbjct: 185 EAALRRSVAICVDKGMLDKGMAYSQRYVRRFLHSPYASQFADLFVTLVVGHDHDVKPQDV 244
Query: 242 VFTISFFSLEEQRAIYLKIAQNSVISGKRKIGFLAIKQLKRIIDRLDYKDLATIQLYENI 301
+ +SF QR +YL+IA+ + ISGK ++ +A+ +++ + D LY +
Sbjct: 245 IDILSFMDAPRQREVYLRIARAAAISGKPELARMAVGRVQSLGAATDNAFGPLADLYGGM 304
Query: 302 LNIPFVDIMSLQRSTCNIPYYSLMEQDRYL 331
+P DI ++ I +L +D+ L
Sbjct: 305 AGLPTEDIDRAAKNVSGIDGNTLSPRDQAL 334
>gi|218680024|ref|ZP_03527921.1| chemotaxis protein [Rhizobium etli CIAT 894]
Length = 357
Score = 389 bits (999), Expect = e-106, Method: Composition-based stats.
Identities = 90/347 (25%), Positives = 164/347 (47%), Gaps = 1/347 (0%)
Query: 3 QKYLICTMMVAMDVFFSFATDQDLVRTIVPYQCVRSLQRALDEAMRGDISLQKKIPDIVK 62
Q + + + + + + PY+ +RSLQ D + GD S + ++
Sbjct: 11 QHRYVGFVALGLAMLSPATGKAQDPDDLAPYKMLRSLQFVQDSVVGGDHSAGEMQRFMLG 70
Query: 63 ETGVQLRATHMDVFVDNRNIDAVWIYTIISQDLSVVDDLIAKDTKGYFDIAIVYALKKYF 122
+LR VF D+RN+DA IY + + ++ LIA D GYFD + L+KY
Sbjct: 71 TIDQRLRTVETSVFEDDRNVDAALIYAMSGGNPQTLEYLIAHDVNGYFDNRVTDVLRKYL 130
Query: 123 SGQLEESSKELSKIKDKDNTRGIVPYLHLLIGRAMMPFSSQQAVHFFDYVRLTSPGTFLE 182
SG+ +K L ++ + + I PYL L+ G ++ A+ +D RL +PGT +E
Sbjct: 131 SGKGLLVAKTLEEMAREYRDKKIGPYLALIGGNVLIATKPTDALDLYDQARLAAPGTIVE 190
Query: 183 EIALRNLLEITQN-EVGERAFGYIRAYVTQFHHSIYKDHFISVLLRFFLHGQLKLPDEDI 241
E ALR + I + + ++ Y + YV +F HS Y F + + + + +D+
Sbjct: 191 EAALRRSVAICVDKGLLDKGMAYSQRYVRRFLHSPYASQFADLFVALVVGHDHDVKPQDV 250
Query: 242 VFTISFFSLEEQRAIYLKIAQNSVISGKRKIGFLAIKQLKRIIDRLDYKDLATIQLYENI 301
V +SF QR +YL+IA+ + ISGK + +A+++++ + D Y +
Sbjct: 251 VDILSFMDAPRQREVYLRIARAAAISGKPDLAHMAVERVQSLGAGTDNAFGPLADFYGGM 310
Query: 302 LNIPFVDIMSLQRSTCNIPYYSLMEQDRYLKKASEIIMSEIGKSLID 348
+P DI ++ I +L +D+ L+ A++ + +I ++
Sbjct: 311 AGLPTEDIDRAAKNVSGIAGNALSPRDQALQAAAQSVAEQILRAPDP 357
>gi|27763657|gb|AAO20255.1| MotC [Agrobacterium sp. H13-3]
Length = 425
Score = 372 bits (956), Expect = e-101, Method: Composition-based stats.
Identities = 99/397 (24%), Positives = 174/397 (43%), Gaps = 24/397 (6%)
Query: 20 FATDQDLVRTIVPYQCVRSLQRALDEAMRGDISLQKKIPDIVKETGVQLRATHMDVFVDN 79
FA QD ++PY +RSLQ D GD S + +++ +L++ +F D
Sbjct: 28 FAQSQD---NLMPYAMLRSLQFVQDSVTMGDHSATEMQRFLLQTIDERLKSAPSAIFKDP 84
Query: 80 RNIDAVWIYTIISQDLSVVDDLIAKDTKGYFDIAIVYALKKYFSGQLEESSKELSKIKDK 139
RN+DA +Y + + + ++ L+A+D G FD + L+KY SG+ ++ ++ + +
Sbjct: 85 RNVDAALVYAMSGGNPATLELLVARDVDGNFDSRVADILRKYLSGKGTLVAQSIAAMVPE 144
Query: 140 DNTRGIVPYLHLLIGRAMMPFSSQQAVHFFDYVRLTSPGTFLEEIALRNLLEITQ-NEVG 198
I YL L+ G +P A+ F+D RL +PGT +EE ALR L I +
Sbjct: 145 YRGTRIGAYLALIGGNVTIPRDPVAALGFYDIARLEAPGTIVEEAALRRSLAIAVEDGDA 204
Query: 199 ERAFGYIRAYVTQFHHSIYKDHFISVLLRFFLHGQLKLPDEDIVFTISFFSLEEQRAIYL 258
R Y + Y +F HS Y F +L+ + + + I T + E Q+ YL
Sbjct: 205 GRGVEYAQRYARRFLHSPYASQFADLLVSLVVKRVDSIGHDTIEETFAMMDAERQKEAYL 264
Query: 259 KIAQNSVISGKRKIGFLAIKQLKRIIDRLDYKDLATIQLYENILNIPFVDIMSLQRSTCN 318
++++ + ISGK + +A + K + + + LYE++ NI D++S +
Sbjct: 265 RLSRLAAISGKDSLARMAALKAKALSPDMPDQPQVQANLYESLSNIGTPDVVSAIETIGQ 324
Query: 319 IPYYSLMEQDRYLKKASEIIMSEIGKSLID-----IDFEHIQKDLLLDKKEPRHTNVSMG 373
IP L ++DR L+ A+ I ++ + Q + + G
Sbjct: 325 IPEAQLSDRDRALRDAARAIADQVVRPPSPQPGADPGVTAGQGAGSGAPANEAASAETKG 384
Query: 374 I---------------ESFIKKNRSQIESIDVLLAEA 395
I + RS+++ ID LL +
Sbjct: 385 IWRVENHKAEDEGENVRQLVTSGRSKLDEIDSLLKKG 421
>gi|325291957|ref|YP_004277821.1| Chemotaxis protein motC [Agrobacterium sp. H13-3]
gi|325059810|gb|ADY63501.1| Chemotaxis protein motC [Agrobacterium sp. H13-3]
Length = 423
Score = 372 bits (955), Expect = e-101, Method: Composition-based stats.
Identities = 99/397 (24%), Positives = 174/397 (43%), Gaps = 24/397 (6%)
Query: 20 FATDQDLVRTIVPYQCVRSLQRALDEAMRGDISLQKKIPDIVKETGVQLRATHMDVFVDN 79
FA QD ++PY +RSLQ D GD S + +++ +L++ +F D
Sbjct: 26 FAQSQD---NLMPYAMLRSLQFVQDSVTMGDHSATEMQRFLLQTIDERLKSAPSAIFKDP 82
Query: 80 RNIDAVWIYTIISQDLSVVDDLIAKDTKGYFDIAIVYALKKYFSGQLEESSKELSKIKDK 139
RN+DA +Y + + + ++ L+A+D G FD + L+KY SG+ ++ ++ + +
Sbjct: 83 RNVDAALVYAMSGGNPATLELLVARDVDGNFDSRVADILRKYLSGKGTLVAQSIAAMVPE 142
Query: 140 DNTRGIVPYLHLLIGRAMMPFSSQQAVHFFDYVRLTSPGTFLEEIALRNLLEITQ-NEVG 198
I YL L+ G +P A+ F+D RL +PGT +EE ALR L I +
Sbjct: 143 YRGTRIGAYLALIGGNVTIPRDPVAALGFYDIARLEAPGTIVEEAALRRSLAIAVEDGDA 202
Query: 199 ERAFGYIRAYVTQFHHSIYKDHFISVLLRFFLHGQLKLPDEDIVFTISFFSLEEQRAIYL 258
R Y + Y +F HS Y F +L+ + + + I T + E Q+ YL
Sbjct: 203 GRGVEYAQRYARRFLHSPYASQFADLLVSLVVKRVDSIGHDTIEETFAMMDAERQKEAYL 262
Query: 259 KIAQNSVISGKRKIGFLAIKQLKRIIDRLDYKDLATIQLYENILNIPFVDIMSLQRSTCN 318
++++ + ISGK + +A + K + + + LYE++ NI D++S +
Sbjct: 263 RLSRLAAISGKDSLARMAALKAKALSPDMPDQPQVQANLYESLSNIGTPDVVSAIETIGQ 322
Query: 319 IPYYSLMEQDRYLKKASEIIMSEIGKSLID-----IDFEHIQKDLLLDKKEPRHTNVSMG 373
IP L ++DR L+ A+ I ++ + Q + + G
Sbjct: 323 IPEAQLSDRDRALRDAARAIADQVVRPPSPQPGADPGVTAGQGAGSGAPANEAASAETKG 382
Query: 374 I---------------ESFIKKNRSQIESIDVLLAEA 395
I + RS+++ ID LL +
Sbjct: 383 IWRVENHKAEDEGENVRQLVTSGRSKLDEIDSLLKKG 419
>gi|222084881|ref|YP_002543410.1| chemotaxis motility protein [Agrobacterium radiobacter K84]
gi|221722329|gb|ACM25485.1| chemotaxis motility protein [Agrobacterium radiobacter K84]
Length = 433
Score = 365 bits (938), Expect = 5e-99, Method: Composition-based stats.
Identities = 99/429 (23%), Positives = 186/429 (43%), Gaps = 35/429 (8%)
Query: 3 QKYLICTMMVAMDVFFSFATDQDLVRTIVPYQCVRSLQRALDEAMRGDISLQKKIPDIVK 62
Q + + + + + PY+ +RSL+ D + GD S + ++
Sbjct: 5 QHRHRLALAFTLGMLMPGGLRAESQDGLPPYKILRSLEFIQDSVVAGDSSAGEMQRFMLS 64
Query: 63 ETGVQLRATHMDVFVDNRNIDAVWIYTIISQDLSVVDDLIAKDTKGYFDIAIVYALKKYF 122
+LR VF D+RN+DA IY + + ++ L+++D G FD + L+KY
Sbjct: 65 TIDERLRNADKSVFDDSRNVDAALIYAMSGGNPDTLEYLMSRDVNGNFDNRVADVLRKYL 124
Query: 123 SGQLEESSKELSKIKDKDNTRGIVPYLHLLIGRAMMPFSSQQAVHFFDYVRLTSPGTFLE 182
+G+ L+ I + + I PYL L+ M + ++A+ +D+ RL SPGT +E
Sbjct: 125 NGKGLLVVNTLADIAREYRDKKIGPYLSLVAANVMSAKNPKEALKLYDWARLASPGTIVE 184
Query: 183 EIALRNLLEI-TQNEVGERAFGYIRAYVTQFHHSIYKDHFISVLLRFFLHGQLKLPDEDI 241
E ALR L + + + GY Y +F HS Y F + ++ + + +DI
Sbjct: 185 ESALRRSLALSADAGMVPQGLGYAARYTRRFLHSPYASQFADLFVQLVVDHDADVKQQDI 244
Query: 242 VFTISFFSLEEQRAIYLKIAQNSVISGKRKIGFLAIKQLKRIIDRLDYKDLATIQLYENI 301
+ +SF QR +YL++A+ + I+GK + LA + + I + A Y +
Sbjct: 245 IDILSFMDPPRQREVYLRMARRAAIAGKADLAALASGRAQAITNDGSDAFSALAGFYGGV 304
Query: 302 LNIPFVDIMSLQRSTCNIPYYSLMEQDRYLKKASEIIMSEIGKSLIDID----------- 350
+ ++ + R +P L +QDR L++A+ ++ EI ++
Sbjct: 305 AGVSTPNMGTAIRKIDQMPAGELNQQDRALREAARLVADEILRAPDPTSLKQGSPLNLLN 364
Query: 351 FEHIQKDLLLDKKEPRHTNVSMGIE-----------------------SFIKKNRSQIES 387
EH + D + + + + G+E +F+ +RS++++
Sbjct: 365 QEHTEHDAAVTNQSGAQSPGTAGVEAGAAVNAAHTPEEGRQEADPSFNAFVTTSRSKLDA 424
Query: 388 IDVLLAEAR 396
ID LL +
Sbjct: 425 IDGLLKAGK 433
>gi|15887915|ref|NP_353596.1| chemotaxis protein [Agrobacterium tumefaciens str. C58]
gi|15155509|gb|AAK86381.1| Chemotaxis protein [Agrobacterium tumefaciens str. C58]
Length = 426
Score = 364 bits (935), Expect = 1e-98, Method: Composition-based stats.
Identities = 97/399 (24%), Positives = 175/399 (43%), Gaps = 25/399 (6%)
Query: 19 SFATDQDLVRTIVPYQCVRSLQRALDEAMRGDISLQKKIPDIVKETGVQLRATHMDVFVD 78
+F+ QD ++PY +RSLQ D GD S + +++ +L++ +F D
Sbjct: 27 AFSQSQD---NLMPYAMLRSLQFVQDSVAMGDHSASEMQRFLLQTIDERLKSAPSAIFKD 83
Query: 79 NRNIDAVWIYTIISQDLSVVDDLIAKDTKGYFDIAIVYALKKYFSGQLEESSKELSKIKD 138
RN+DA IY + + + ++ L+A+D G FD + L+KY SG+ ++ ++ +
Sbjct: 84 PRNVDAALIYAMSGGNPATLELLVARDVDGNFDSRVADILRKYLSGKGTLVAQSIAAMVP 143
Query: 139 KDNTRGIVPYLHLLIGRAMMPFSSQQAVHFFDYVRLTSPGTFLEEIALRNLLEITQ-NEV 197
+ I YL L+ G +P A+ F+D RL +PGT +EE ALR L I +
Sbjct: 144 EYRGTRIGAYLALIGGNVTIPRDPLAALTFYDIARLEAPGTIVEEAALRRSLAIAVEDGD 203
Query: 198 GERAFGYIRAYVTQFHHSIYKDHFISVLLRFFLHGQLKLPDEDIVFTISFFSLEEQRAIY 257
+ Y + Y +F HS Y F +L+ + + +E I T + E Q+ Y
Sbjct: 204 ATKGVDYAQRYARRFLHSPYASQFADLLVSLVVKRADSIGEEAIQETFAMMDAERQKEAY 263
Query: 258 LKIAQNSVISGKRKIGFLAIKQLKRIIDRLDYKDLATIQLYENILNIPFVDIMSLQRSTC 317
L++++ + ISGK + +A + K + L LYE++ NI D++S +
Sbjct: 264 LRLSRLAAISGKDSLARMAAVKAKTLSPALPGTPEVQANLYESLSNIGTPDVVSAIEAIG 323
Query: 318 NIPYYSLMEQDRYLKKASEIIMSEIGKSLIDIDFEHIQKDLLLDKK-------------- 363
IP L ++DR L+ A+ I ++ + + +
Sbjct: 324 QIPEAQLSDRDRALRDAARAIADQVVRPPSAETGVEAKAAATNEPGGTAPAKEAAVAADT 383
Query: 364 -------EPRHTNVSMGIESFIKKNRSQIESIDVLLAEA 395
+ + + + RS+++ ID LL +
Sbjct: 384 KSIWRVETQKADDAGENVRQLVTSGRSKLDEIDSLLKKG 422
>gi|227820871|ref|YP_002824841.1| chemotaxis protein [Sinorhizobium fredii NGR234]
gi|227339870|gb|ACP24088.1| chemotaxis protein motility protein C [Sinorhizobium fredii NGR234]
Length = 435
Score = 362 bits (928), Expect = 7e-98, Method: Composition-based stats.
Identities = 97/427 (22%), Positives = 181/427 (42%), Gaps = 38/427 (8%)
Query: 6 LICTMMVAMDVFFSFATDQDLVRTIVPYQCVRSLQRALDEAMRGDISLQKKIPDIVKETG 65
++ T ++A+ + A + + P++ VRSLQ D + GD S + ++ +
Sbjct: 8 ILATSVLAVPLAIGLARASE-TEELAPFKMVRSLQYVQDSVVLGDHSAIEMQRFMLNKID 66
Query: 66 VQLRATHMDVFVDNRNIDAVWIYTIISQDLSVVDDLIAKDTKGYFDIAIVYALKKYFSGQ 125
+LRA +F D RN+DA +Y + + +D L +D +G FD + AL++Y G+
Sbjct: 67 KRLRAADEAIFRDPRNVDAALVYVMSGGNPETLDYLTDRDVEGNFDARVAEALRQYLRGK 126
Query: 126 LEESSKELSKIKDKDNTRGIVPYLHLLIGRAMMPFSSQQAVHFFDYVRLTSPGTFLEEIA 185
+ L+K + + PYL L++G A A+ ++D+ RLT+PGT +EE A
Sbjct: 127 GPLIVENLAKAAPEYKNSRVGPYLFLILGNATSQQDPVAAMKYYDWARLTAPGTIIEEAA 186
Query: 186 LRNLLEIT-QNEVGERAFGYIRAYVTQFHHSIYKDHFISVLLRFFLHGQLKLPDEDIVFT 244
LR + + Q E+ F Y Y ++ S Y F V + + + ++ +
Sbjct: 187 LRRSVSLAVQAGDPEKGFRYALNYARRYLTSPYASQFADVFVELAVTHFDETVEKRVAEI 246
Query: 245 ISFFSLEEQRAIYLKIAQNSVISGKRKIGFLAIKQLKRIIDRLDYKDLATIQLYENILNI 304
++F QR +YL++A+ + I G + + LA + + + + Y+ + +
Sbjct: 247 LAFMDQSRQREVYLRVARRAAIGGNQTLARLASSRAEELALDGGGQSQLLASFYDGLAAV 306
Query: 305 PFVDIMSLQRSTCNIPYYSLMEQDRYLKKASEIIMSEIGKSLIDIDFEH----------- 353
P D+ + ++ IP L +DR L++A+ I E+ + D
Sbjct: 307 PSEDVFTAAQTLAAIPDGKLSRRDRALREAARAIAEEVVRLPRDESSAQASMPIPEANTG 366
Query: 354 -----------------------IQKDLLLDKKEPRHTNVSMGI--ESFIKKNRSQIESI 388
++ T + + F+ RS+I+ I
Sbjct: 367 PAKDGGETGETGSGMSPFAVASDRPPAPGGERPASAETAAASDPALDGFVANGRSKIKEI 426
Query: 389 DVLLAEA 395
D LLAE
Sbjct: 427 DALLAEE 433
>gi|222147585|ref|YP_002548542.1| chemotaxis protein [Agrobacterium vitis S4]
gi|221734573|gb|ACM35536.1| Chemotaxis protein [Agrobacterium vitis S4]
Length = 483
Score = 361 bits (926), Expect = 1e-97, Method: Composition-based stats.
Identities = 99/417 (23%), Positives = 164/417 (39%), Gaps = 42/417 (10%)
Query: 18 FSFATDQDLVRTIVPYQCVRSLQRALDEAMRGDISLQKKIPDIVKETGVQLRATHMDVFV 77
A + PY +RSLQ D +RGD S ++ +LR F
Sbjct: 62 VGSAAVGGDSDNLPPYLMLRSLQFVQDSVVRGDHSAADMQRFLLTRIDKRLRTAAPSDFE 121
Query: 78 DNRNIDAVWIYTIISQDLSVVDDLIAKDTKGYFDIAIVYALKKYFSGQLEESSKELSKIK 137
D RN+DA IYT+ + + +D L+A+D G+FD + L+KY SG+ + L ++
Sbjct: 122 DPRNVDAALIYTMSGGNPATLDYLVARDVDGHFDNRVSDMLRKYLSGKGVLVASSLGEMV 181
Query: 138 DKDNTRGIVPYLHLLIGRAMMPFSSQQAVHFFDYVRLTSPGTFLEEIALRNLLEITQN-E 196
+ PY+ L+ G + A+ FFD RL +PGT +EE ALR +I +
Sbjct: 182 PLYQNGRVGPYIALVAGNVTLVKDPAGALKFFDIARLVAPGTIVEEAALRRSFQIAMDTG 241
Query: 197 VGERAFGYIRAYVTQFHHSIYKDHFISVLLRFFLHGQLKLPDEDIVFTISFFSLEEQRAI 256
RA Y Y +F +S Y F +L++ + +L DI+ T++ + QR +
Sbjct: 242 QNGRAMAYANRYARRFLYSPYASQFADLLVQLVVDHFSELDKNDILATLATMDPDRQREV 301
Query: 257 YLKIAQNSVISGKRKIGFLAIKQLKRIIDRLDYKDLATIQLYENILNIPFVDIMSLQRST 316
YL+IA+ + I+G + + LA Q + + L K+ LY I D+ + +
Sbjct: 302 YLRIARRATINGNQALASLASSQAQSLA-GLPDKNDPQALLYGGAALISTTDVKNALNTI 360
Query: 317 CNIPYYSLMEQDRYLKKASEIIMSEI---------------------------------- 342
+P L D L +A+ + EI
Sbjct: 361 SQLPKDQLSASDNALLEAARAVAQEIITLPTAPQSPSASPSTPPPSGDNTAPESVANVSD 420
Query: 343 -GKSLIDIDFEHIQKDLLLDKK-----EPRHTNVSMGIESFIKKNRSQIESIDVLLA 393
+ + ++F+ RS++E ID +L
Sbjct: 421 QQDPGVPAKATAMPDAGSGTAPVTPASADAKQKPDPEFQTFMSGGRSKLEEIDKMLK 477
>gi|150395499|ref|YP_001325966.1| chemotaxis protein [Sinorhizobium medicae WSM419]
gi|150027014|gb|ABR59131.1| chemotaxis precursor (motility protein C) transmembrane
[Sinorhizobium medicae WSM419]
Length = 433
Score = 355 bits (911), Expect = 8e-96, Method: Composition-based stats.
Identities = 102/423 (24%), Positives = 181/423 (42%), Gaps = 36/423 (8%)
Query: 6 LICTMMVAMDVFFSFATDQDLVRTIVPYQCVRSLQRALDEAMRGDISLQKKIPDIVKETG 65
+ ++A+ + A + P++ +RSLQ D + GD S + ++
Sbjct: 8 IFAASVLAVPLALGPARAS-GTEELAPFKMIRSLQYVQDSVVLGDHSAIEMQRFMLGAID 66
Query: 66 VQLRATHMDVFVDNRNIDAVWIYTIISQDLSVVDDLIAKDTKGYFDIAIVYALKKYFSGQ 125
+LRA F D RN+DA +Y + + + +D L +D +G FD + AL++Y +G+
Sbjct: 67 ERLRAADPSAFRDPRNVDAALVYVMSGGNPATLDLLADRDIEGNFDSRVTDALRQYLNGK 126
Query: 126 LEESSKELSKIKDKDNTRGIVPYLHLLIGRAMMPFSSQQAVHFFDYVRLTSPGTFLEEIA 185
+ L+K + I PYL L++G AM +A+ +D+ RLT+PGT +EE A
Sbjct: 127 GPLIVENLTKAAPEYKNSRIGPYLFLILGNAMSQQDPIEAMKHYDWARLTAPGTIIEEAA 186
Query: 186 LRNLLEIT-QNEVGERAFGYIRAYVTQFHHSIYKDHFISVLLRFFLHGQLKLPDEDIVFT 244
LR + + Q + E+ F Y Y ++ S Y F V + + + D +
Sbjct: 187 LRRSVSLAAQAGLPEKGFRYALNYARRYLTSPYASQFADVFVELAVAHFDESADGRVSEI 246
Query: 245 ISFFSLEEQRAIYLKIAQNSVISGKRKIGFLAIKQLKRIIDRLDYKDLATIQLYENILNI 304
+SF QR +YL++A+ + I+G + + +A K+ + ++ + YE + +
Sbjct: 247 LSFMDSARQREVYLRVARRAAIAGNQALARVASKRAEELVGDDGSRSQMLASFYEGLAAV 306
Query: 305 PFVDIMSLQRSTCNIPYYSLMEQDRYLKKASE----------IIMSEIGKSLIDIDFEHI 354
P D+ S + IP L +DR L++A+ I S +
Sbjct: 307 PSADVFSAAEALAAIPDDKLSPRDRALREAARAVADAVVRPPAIESLAQAPFPIAERRPG 366
Query: 355 QKDLLLDK------------------------KEPRHTNVSMGIESFIKKNRSQIESIDV 390
Q+D + + E + I+ F+ RS+IE ID
Sbjct: 367 QEDGVAAEEDGSGMSPFGQPVEESPSRPSEMTAEADAASGDPAIDGFLASGRSKIEEIDA 426
Query: 391 LLA 393
LL
Sbjct: 427 LLK 429
>gi|2275157|gb|AAB81409.1| MotC [Sinorhizobium meliloti]
Length = 434
Score = 352 bits (902), Expect = 8e-95, Method: Composition-based stats.
Identities = 96/406 (23%), Positives = 169/406 (41%), Gaps = 36/406 (8%)
Query: 26 LVRTIVPYQCVRSLQRALDEAMRGDISLQKKIPDIVKETGVQLRATHMDVFVDNRNIDAV 85
+ PY+ +RSLQ D + GD S + ++ +LRA F D RN+DA
Sbjct: 27 GTEELTPYKMIRSLQYVQDSVVLGDHSAIEMQRFMLGAIDERLRAADPSAFRDPRNVDAA 86
Query: 86 WIYTIISQDLSVVDDLIAKDTKGYFDIAIVYALKKYFSGQLEESSKELSKIKDKDNTRGI 145
+Y + + + +D L +D +G FD + AL++Y +G+ + L+K + I
Sbjct: 87 LVYVMSGGNPATLDLLADRDIEGNFDSRVTDALRQYLNGKGPLIVENLTKAAPEYKNSRI 146
Query: 146 VPYLHLLIGRAMMPFSSQQAVHFFDYVRLTSPGTFLEEIALRNLLEITQ-NEVGERAFGY 204
PYL L++G AM +A+ +D+ RLT+PGT +EE ALR + + + E+ F Y
Sbjct: 147 GPYLFLILGNAMSQQDPIEAMKHYDWARLTAPGTIIEEAALRRSVSLAAGAGLPEKGFRY 206
Query: 205 IRAYVTQFHHSIYKDHFISVLLRFFLHGQLKLPDEDIVFTISFFSLEEQRAIYLKIAQNS 264
Y ++ S Y F V + + + D + +SF QR +YL++A+ +
Sbjct: 207 ALNYARRYLTSPYASQFADVFVELAVAHFDEAADGRVSEILSFMDSARQREVYLRVARRA 266
Query: 265 VISGKRKIGFLAIKQLKRIIDRLDYKDLATIQLYENILNIPFVDIMSLQRSTCNIPYYSL 324
I+G + + LA ++ + + + YE + +P D+ S + IP L
Sbjct: 267 AIAGNQALARLASRRAEELAGDDSSRSQVLASFYEGLAAVPSADVFSAAEALEAIPDEKL 326
Query: 325 MEQDRYLKKA-----------------SEIIMSEIGKSLIDIDFEHIQKDLLLDKKEPRH 367
+DR L++A ++ + + ++ +
Sbjct: 327 SPRDRALREAAKAVADAVVRPPFGESPAQAPAPIAERPAGEQSELAAEESGSGMSPFGQP 386
Query: 368 TNVSMGIES------------------FIKKNRSQIESIDVLLAEA 395
S G S F+ RS+I+ ID LL
Sbjct: 387 VEASPGRPSEMTAEADAAASDDPALDGFLASGRSKIDEIDALLKRE 432
>gi|307318925|ref|ZP_07598356.1| chemotaxis protein [Sinorhizobium meliloti AK83]
gi|306895339|gb|EFN26094.1| chemotaxis protein [Sinorhizobium meliloti AK83]
Length = 434
Score = 347 bits (890), Expect = 2e-93, Method: Composition-based stats.
Identities = 96/406 (23%), Positives = 171/406 (42%), Gaps = 36/406 (8%)
Query: 24 QDLVRTIVPYQCVRSLQRALDEAMRGDISLQKKIPDIVKETGVQLRATHMDVFVDNRNID 83
+ + PY+ +RSLQ D + GD S + ++ +LRA F D RN+D
Sbjct: 25 ANGTEELTPYKMIRSLQYVQDSVVLGDHSAIEMQRFMLGAIDERLRAADPSAFRDPRNVD 84
Query: 84 AVWIYTIISQDLSVVDDLIAKDTKGYFDIAIVYALKKYFSGQLEESSKELSKIKDKDNTR 143
A +Y + + + +D L +D +G FD + AL++Y +G+ + L+K +
Sbjct: 85 AALVYVMSGGNPATLDLLADRDIEGNFDSRVTDALRQYLNGKGPLIVENLTKAAPEYKNS 144
Query: 144 GIVPYLHLLIGRAMMPFSSQQAVHFFDYVRLTSPGTFLEEIALRNLLEIT-QNEVGERAF 202
I PYL L++G AM +A+ +D+ RLT+PGT +EE ALR + + Q + E+ F
Sbjct: 145 RIGPYLFLILGNAMSQQDPIEAMKHYDWARLTAPGTIIEEAALRRSVSLAAQAGLPEKGF 204
Query: 203 GYIRAYVTQFHHSIYKDHFISVLLRFFLHGQLKLPDEDIVFTISFFSLEEQRAIYLKIAQ 262
Y Y ++ S Y F V + + + D + +SF QR +YL++A+
Sbjct: 205 RYALNYARRYLTSPYASQFADVFVELAVAHFDEAADGRVSEILSFMDSARQREVYLRVAR 264
Query: 263 NSVISGKRKIGFLAIKQLKRIIDRLDYKDLATIQLYENILNIPFVDIMSLQRSTCNIPYY 322
+ I+G + + LA ++ + + + YE + +P D+ S + IP
Sbjct: 265 RAAIAGNQALARLASRRAEELAGDDSSRSQVLASFYEGLAAVPSADVFSAAEALEAIPDE 324
Query: 323 SLMEQDRYLKKA-----------------SEIIMSEIGKSLIDIDFEHIQKDLLLDKKEP 365
L +DR L++A ++ + + ++
Sbjct: 325 KLSPRDRALREAAKAVADAVVRPPLGESPAQAPAPIAERPAGEQSELAAEESGSGMSPFG 384
Query: 366 RHTNVSMGI------------------ESFIKKNRSQIESIDVLLA 393
+ S G + F+ RS+I+ ID LL
Sbjct: 385 QPVEASPGRPSEMTAEADVAASDDPALDGFLASGRSKIDEIDALLK 430
>gi|307311570|ref|ZP_07591211.1| chemotaxis protein [Sinorhizobium meliloti BL225C]
gi|306899587|gb|EFN30216.1| chemotaxis protein [Sinorhizobium meliloti BL225C]
Length = 434
Score = 347 bits (889), Expect = 3e-93, Method: Composition-based stats.
Identities = 96/406 (23%), Positives = 171/406 (42%), Gaps = 36/406 (8%)
Query: 24 QDLVRTIVPYQCVRSLQRALDEAMRGDISLQKKIPDIVKETGVQLRATHMDVFVDNRNID 83
+ + PY+ +RSLQ D + GD S + ++ +LRA F D RN+D
Sbjct: 25 ANGTEELTPYKMIRSLQYVQDSVVLGDHSAIEMQRFMLGAIDERLRAADHSAFRDPRNVD 84
Query: 84 AVWIYTIISQDLSVVDDLIAKDTKGYFDIAIVYALKKYFSGQLEESSKELSKIKDKDNTR 143
A +Y + + + +D L +D +G FD + AL++Y +G+ + L+K +
Sbjct: 85 AALVYVMSGGNPATLDLLADRDIEGNFDSRVTDALRQYLNGKGPLIVENLTKAAPEYKNS 144
Query: 144 GIVPYLHLLIGRAMMPFSSQQAVHFFDYVRLTSPGTFLEEIALRNLLEIT-QNEVGERAF 202
I PYL L++G AM +A+ +D+ RLT+PGT +EE ALR + + Q + E+ F
Sbjct: 145 RIGPYLFLILGNAMSQQDPIEAMKHYDWARLTAPGTIIEEAALRRSVSLAAQAGLPEKGF 204
Query: 203 GYIRAYVTQFHHSIYKDHFISVLLRFFLHGQLKLPDEDIVFTISFFSLEEQRAIYLKIAQ 262
Y Y ++ S Y F V + + + D + +SF QR +YL++A+
Sbjct: 205 RYALNYARRYLTSPYASQFADVFVELAVAHFDEAADGRVSEILSFMDSARQREVYLRVAR 264
Query: 263 NSVISGKRKIGFLAIKQLKRIIDRLDYKDLATIQLYENILNIPFVDIMSLQRSTCNIPYY 322
+ I+G + + LA ++ + + + YE + +P D+ S + IP
Sbjct: 265 RAAIAGNQALARLASRRAEELAGDDSSRSQVLASFYEGLAAVPSADVFSAAEALEAIPDE 324
Query: 323 SLMEQDRYLKKA-----------------SEIIMSEIGKSLIDIDFEHIQKDLLLDKKEP 365
L +DR L++A ++ + + ++
Sbjct: 325 KLSPRDRALREAAKAVADAVVRPPLGESPAQAPAPIAERPAGEQSELAAEESGSGMSPFG 384
Query: 366 RHTNVSMGI------------------ESFIKKNRSQIESIDVLLA 393
+ S G + F+ RS+I+ ID LL
Sbjct: 385 QPVEASPGRPSEMTAEADVAASDDPALDGFLASGRSKIDEIDALLK 430
>gi|15964428|ref|NP_384781.1| chemotaxis protein [Sinorhizobium meliloti 1021]
gi|17380484|sp|Q52963|MOTC_RHIME RecName: Full=Chemotaxis protein motC; AltName: Full=Motility
protein C; Flags: Precursor
gi|15073605|emb|CAC45247.1| Chemotaxis precursor (motility protein C) transmembrane
[Sinorhizobium meliloti 1021]
Length = 434
Score = 345 bits (885), Expect = 8e-93, Method: Composition-based stats.
Identities = 95/406 (23%), Positives = 171/406 (42%), Gaps = 36/406 (8%)
Query: 24 QDLVRTIVPYQCVRSLQRALDEAMRGDISLQKKIPDIVKETGVQLRATHMDVFVDNRNID 83
+ + PY+ +RSLQ D + GD S + ++ +LRA F D RN+D
Sbjct: 25 ANGTEELTPYKMIRSLQYVQDSVVLGDHSAIEMQRFMLGAIDERLRAADHSAFRDPRNVD 84
Query: 84 AVWIYTIISQDLSVVDDLIAKDTKGYFDIAIVYALKKYFSGQLEESSKELSKIKDKDNTR 143
A +Y + + + +D L +D +G FD + AL++Y +G+ + L+K +
Sbjct: 85 AALVYVMSGGNPATLDLLADRDIEGNFDSRVTDALRQYLNGKGPLIVENLTKAAPEYKNS 144
Query: 144 GIVPYLHLLIGRAMMPFSSQQAVHFFDYVRLTSPGTFLEEIALRNLLEIT-QNEVGERAF 202
I PYL L++G AM +A+ +D+ RLT+PGT +EE ALR + + Q + E+ F
Sbjct: 145 RIGPYLFLILGNAMSQQDPIEAMKHYDWARLTAPGTIIEEAALRRSVSLAAQAGLPEKGF 204
Query: 203 GYIRAYVTQFHHSIYKDHFISVLLRFFLHGQLKLPDEDIVFTISFFSLEEQRAIYLKIAQ 262
Y Y ++ S + F V + + + D + +SF QR +YL++A+
Sbjct: 205 RYALNYARRYLTSPFASQFADVFVELAVAHFDEAADGRVSEILSFMDSARQREVYLRVAR 264
Query: 263 NSVISGKRKIGFLAIKQLKRIIDRLDYKDLATIQLYENILNIPFVDIMSLQRSTCNIPYY 322
+ I+G + + LA ++ + + + YE + +P D+ S + IP
Sbjct: 265 RAAIAGNQALARLASRRAEELAGDDSSRSQVLASFYEGLAAVPSADVFSAAEALEAIPDE 324
Query: 323 SLMEQDRYLKKA-----------------SEIIMSEIGKSLIDIDFEHIQKDLLLDKKEP 365
L +DR L++A ++ + + ++
Sbjct: 325 KLSPRDRALREAAKAVADAVVRPPLGESPAQAPAPIAERPAGEQSELAAEESGSGMSPFG 384
Query: 366 RHTNVSMGI------------------ESFIKKNRSQIESIDVLLA 393
+ S G + F+ RS+I+ ID LL
Sbjct: 385 QPVEASPGRPSEMTAEADVAASDDPALDGFLASGRSKIDEIDALLK 430
>gi|163758027|ref|ZP_02165115.1| chemotaxis motility protein [Hoeflea phototrophica DFL-43]
gi|162284316|gb|EDQ34599.1| chemotaxis motility protein [Hoeflea phototrophica DFL-43]
Length = 566
Score = 338 bits (866), Expect = 1e-90, Method: Composition-based stats.
Identities = 91/351 (25%), Positives = 160/351 (45%), Gaps = 1/351 (0%)
Query: 26 LVRTIVPYQCVRSLQRALDEAMRGDISLQKKIPDIVKETGVQLRATHMDVFVDNRNIDAV 85
+ + PY+ +RSLQ D + GD S + ++ +LRA VF D RN+DA
Sbjct: 161 DLDGLEPYKLIRSLQYVQDAVVLGDHSAMEMQRFLLGVIDSRLRAADQSVFDDPRNVDAA 220
Query: 86 WIYTIISQDLSVVDDLIAKDTKGYFDIAIVYALKKYFSGQLEESSKELSKIKDKDNTRGI 145
IY + + ++ L +D G FD I L+ Y +G+ ++ L+++ I
Sbjct: 221 LIYAMSGGNPETLEILALQDKFGNFDNEITTVLRAYLNGRAAKTQTTLAEVVAIYRDSRI 280
Query: 146 VPYLHLLIGRAMMPFSSQQAVHFFDYVRLTSPGTFLEEIALRNLLEITQNE-VGERAFGY 204
PYL L+ + A+ FD+ RLT+PGT +EE ALR L I + + + A Y
Sbjct: 281 GPYLTLIAANVTAALNDPAALELFDWARLTAPGTLVEEAALRRSLFIAAAQNMVDEALEY 340
Query: 205 IRAYVTQFHHSIYKDHFISVLLRFFLHGQLKLPDEDIVFTISFFSLEEQRAIYLKIAQNS 264
+ Y +F +S Y + +L+ + K+ D+ + ++F +R +YL+IA+ +
Sbjct: 341 AQLYARRFINSPYAGQYADLLVDLVVLNYEKVGDDQLNAILTFMDRPRKREVYLRIARKA 400
Query: 265 VISGKRKIGFLAIKQLKRIIDRLDYKDLATIQLYENILNIPFVDIMSLQRSTCNIPYYSL 324
VISG R + A + + + D LA LY + +P + ++ + L
Sbjct: 401 VISGLRDLAVFASGKAEELASPEDRIPLALADLYAGMAKVPTDGVDAVLEELNAVSERQL 460
Query: 325 MEQDRYLKKASEIIMSEIGKSLIDIDFEHIQKDLLLDKKEPRHTNVSMGIE 375
+DR L+ A++I+ +E+ + +L + P GI
Sbjct: 461 SPRDRALRTAAQIVAAEVIRKPDPNSLTQAFSPMLNEPNAPEQDADLTGIA 511
>gi|153011512|ref|YP_001372726.1| chemotaxis protein [Ochrobactrum anthropi ATCC 49188]
gi|151563400|gb|ABS16897.1| conserved hypothetical MotC chemotaxis protein [Ochrobactrum
anthropi ATCC 49188]
Length = 431
Score = 333 bits (854), Expect = 3e-89, Method: Composition-based stats.
Identities = 88/418 (21%), Positives = 160/418 (38%), Gaps = 30/418 (7%)
Query: 7 ICTMMVAMDVFFSFATDQDLVRT-----IVPYQCVRSLQRALDEAMRGDISLQKKIPDIV 61
+ + + + +F+ Q L T + PY+ VRSL+ D+ + G + ++
Sbjct: 13 VAGLSLMGAAYPAFSQMQTLAETRALPVLEPYKLVRSLRMLQDQVVAGKPEAVVMLNKLL 72
Query: 62 KETGVQLRATHMDVFVDNRNIDAVWIYTIISQDLSVVDDLIAKDTKGYFDIAIVYALKKY 121
+ DV+ + N+ A IY + V ++A +V Y
Sbjct: 73 GFVSADMGRASNDVWSNPENVYAAIIYLFNGGNPEAVRKVLADLKTDAVPPELVKGALAY 132
Query: 122 FSGQLEESSKELSKIKDKDNTRGIVPYLHLLIGRAMMPFSSQQAVHFFDYVRLTSPGTFL 181
SGQ E K S D + + L+ M F A+ D VRL +PGT
Sbjct: 133 ASGQTIEVVKLFSVPLSPDVPAELKASIVLVTASQMTAFDPATALMRLDQVRLDAPGTLF 192
Query: 182 EEIALRNLLEITQN-EVGERAFGYIRAYVTQFHHSIYKDHFISVLLRFFLHGQLKLPDED 240
EE A+R + I ++ R Y+ +F S Y F++ + + ++ + +
Sbjct: 193 EEAAIRRSMPIAAKLGDADKIRLLSRNYLQRFPRSPYMRDFMAQFVDAAVKLNDRIGNAE 252
Query: 241 IVFTISFFSLEEQRAIYLKIAQNSVISGKRKIGFLAIKQLKRIIDRLDYKDLATIQLYEN 300
+ I Q ++YL+IA+ +++ G+ + + K++ DRL D LY
Sbjct: 253 LAKLIGSADPVMQYSLYLQIARGALVDGQTERARFMSAEAKKLADRLK-ADPTRANLYAA 311
Query: 301 ILNIPFVDIMSLQRSTCNIPYYSLMEQDRYLKKASEIIMSEIGKSL---IDIDFEHIQKD 357
++ S R I L E+DR L KA+E + + + ++ ++D
Sbjct: 312 ASDVASDSAGSALRELSQISPDKLQERDRKLLKAAEAVGTVVTRTPDALPPAKPALTERD 371
Query: 358 LL-----------LDKKEPRHTNVSMGI---------ESFIKKNRSQIESIDVLLAEA 395
+ K EP VSM + ++ R ++ ID LL +
Sbjct: 372 VPPMAVADSQEHEAVKPEPTPAGVSMKPVKNQPEDDLQKTMEDARRKLAEIDALLGKT 429
>gi|306841272|ref|ZP_07473983.1| chemotaxis protein [Brucella sp. BO2]
gi|306288674|gb|EFM60005.1| chemotaxis protein [Brucella sp. BO2]
Length = 420
Score = 328 bits (842), Expect = 8e-88, Method: Composition-based stats.
Identities = 83/390 (21%), Positives = 144/390 (36%), Gaps = 25/390 (6%)
Query: 30 IVPYQCVRSLQRALDEAMRGDISLQKKIPDIVKETGVQLRATHMDVFVDNRNIDAVWIYT 89
+ PY+ VRSL+ D+ + G + ++ + +V+ NI A IY
Sbjct: 30 LEPYKLVRSLRMLQDQVVAGKPEAVVMLNKLLGFVSTDMSRAQPEVWDKPENIYAAIIYL 89
Query: 90 IISQDLSVVDDLIAKDTKGYFDIAIVYALKKYFSGQLEESSKELSKIKDKDNTRGIVPYL 149
+ V ++A +V Y SGQ E K S D + +
Sbjct: 90 FNGGNPEAVRKVLANLKTDTVPQELVKGALAYASGQTIEVVKLFSVPLAPDVPAELKASI 149
Query: 150 HLLIGRAMMPFSSQQAVHFFDYVRLTSPGTFLEEIALRNLLEITQN-EVGERAFGYIRAY 208
L+ MM F A+ D VRL +PGT EE A+R L I ++ R Y
Sbjct: 150 VLVTANQMMAFDPATALLRLDQVRLEAPGTLFEEAAIRRSLPIAAKLGDADKVRLLSRNY 209
Query: 209 VTQFHHSIYKDHFISVLLRFFLHGQLKLPDEDIVFTISFFSLEEQRAIYLKIAQNSVISG 268
+ +F HS Y F++ + L ++ +E++V I Q +YL+IA+ +++ G
Sbjct: 210 LQRFRHSPYMRDFMAQFVDTTLKLSDRIGNEELVKLIGSADPLLQYTLYLQIARGALVDG 269
Query: 269 KRKIGFLAIKQLKRIIDRLDYKDLATIQLYENILNIPFVDIMSLQRSTCNIPYYSLMEQD 328
+ + + +++ L D LY ++ S R I L E D
Sbjct: 270 QTERARFMSAEARKLAGHL-NADPTRANLYAAASDVVSDSAGSALRELSQISPDHLQEPD 328
Query: 329 RYLKKASEIIMSEIGKSL------------------IDIDFEHIQKDLLLDKKEPRHTNV 370
R L KA+E + + + ++ D L N
Sbjct: 329 RKLLKAAETVGAIVTRAPDTTPPAKRSADEREVPRMAVADAPQQPAQQALSAPVEVDFNS 388
Query: 371 S-----MGIESFIKKNRSQIESIDVLLAEA 395
+ ++ ++ R ++ ID LL +
Sbjct: 389 ARTRSEADLQKTMENARRKLAEIDALLGKT 418
>gi|306845423|ref|ZP_07477997.1| chemotaxis protein [Brucella sp. BO1]
gi|306274166|gb|EFM55982.1| chemotaxis protein [Brucella sp. BO1]
Length = 430
Score = 328 bits (841), Expect = 8e-88, Method: Composition-based stats.
Identities = 83/390 (21%), Positives = 145/390 (37%), Gaps = 25/390 (6%)
Query: 30 IVPYQCVRSLQRALDEAMRGDISLQKKIPDIVKETGVQLRATHMDVFVDNRNIDAVWIYT 89
+ PY+ VRSL+ D+ + G + ++ + +V+ NI A IY
Sbjct: 40 LEPYKLVRSLRMLQDQVVAGKPEAVVMLNKLLGFVSTDMSRAQPEVWDKPENIYAAIIYL 99
Query: 90 IISQDLSVVDDLIAKDTKGYFDIAIVYALKKYFSGQLEESSKELSKIKDKDNTRGIVPYL 149
+ V ++A +V Y SGQ E K S D + +
Sbjct: 100 FNGGNPEAVRKVLANLKSDTVPQELVKGALAYASGQTIEVVKLFSVPLAPDVPAELKASI 159
Query: 150 HLLIGRAMMPFSSQQAVHFFDYVRLTSPGTFLEEIALRNLLEITQN-EVGERAFGYIRAY 208
L+ MM F A+ D VRL +PGT EE A+R L I ++ R Y
Sbjct: 160 VLVTANQMMAFDPATALLRLDQVRLEAPGTLFEEAAIRRSLPIAAKLGDADKVRLLSRNY 219
Query: 209 VTQFHHSIYKDHFISVLLRFFLHGQLKLPDEDIVFTISFFSLEEQRAIYLKIAQNSVISG 268
+ +F HS Y F++ + L ++ +E++V I Q +YL+IA+ +++ G
Sbjct: 220 LQRFRHSPYMRDFMAQFVDTTLKLSDRIGNEELVKLIGSADPLLQYTLYLQIARGALVDG 279
Query: 269 KRKIGFLAIKQLKRIIDRLDYKDLATIQLYENILNIPFVDIMSLQRSTCNIPYYSLMEQD 328
+ + + +++ L D LY ++ S R I L E D
Sbjct: 280 QTERARFMSAEARKLAGHL-NADPTRANLYAAASDVASDSAGSALRELSQISPDHLQEPD 338
Query: 329 RYLKKASEIIMSEIGKSL------------------IDIDFEHIQKDLLLDKKEPRHTNV 370
R L KA+E + + + ++ D + L N
Sbjct: 339 RKLLKAAETVGAIVTRAPDTTPPAKRSADEREVPRMAVADAPQLPAQQALSAPVEVDFNS 398
Query: 371 S-----MGIESFIKKNRSQIESIDVLLAEA 395
+ ++ ++ R ++ ID LL +
Sbjct: 399 ARTRSEADLQKTMENARRKLAEIDALLGKT 428
>gi|161511179|ref|NP_541132.2| chemotaxis protein [Brucella melitensis bv. 1 str. 16M]
gi|256042870|ref|ZP_05445816.1| chemotaxis protein [Brucella melitensis bv. 1 str. Rev.1]
gi|260564107|ref|ZP_05834592.1| chemotaxis motc protein [Brucella melitensis bv. 1 str. 16M]
gi|265989305|ref|ZP_06101862.1| chemotaxis protein [Brucella melitensis bv. 1 str. Rev.1]
gi|260151750|gb|EEW86843.1| chemotaxis motc protein [Brucella melitensis bv. 1 str. 16M]
gi|262999974|gb|EEZ12664.1| chemotaxis protein [Brucella melitensis bv. 1 str. Rev.1]
Length = 430
Score = 327 bits (838), Expect = 2e-87, Method: Composition-based stats.
Identities = 86/410 (20%), Positives = 151/410 (36%), Gaps = 28/410 (6%)
Query: 13 AMDVFFSFATDQDLVRTI---VPYQCVRSLQRALDEAMRGDISLQKKIPDIVKETGVQLR 69
+ + A Q +R + PY+ VRSL+ D+ + G + ++ +
Sbjct: 20 GVAGGTACARAQPEMRPLPVLEPYKLVRSLRMLQDQVVAGKPEAVVMLNKLLGFVSTDMS 79
Query: 70 ATHMDVFVDNRNIDAVWIYTIISQDLSVVDDLIAKDTKGYFDIAIVYALKKYFSGQLEES 129
+V+ NI A IY + V ++A +V Y SGQ E
Sbjct: 80 RAQPEVWDKPENIYAAIIYLFNGGNPEAVRKVLANLKTDTVPQELVKGALAYASGQTIEV 139
Query: 130 SKELSKIKDKDNTRGIVPYLHLLIGRAMMPFSSQQAVHFFDYVRLTSPGTFLEEIALRNL 189
K S + + + L+ MM F A+ D VRL +PGT EE A+R
Sbjct: 140 VKLFSVPLAPEVPAELKASIVLVTANQMMAFDPATALLRLDQVRLEAPGTLFEEAAIRRS 199
Query: 190 LEITQN-EVGERAFGYIRAYVTQFHHSIYKDHFISVLLRFFLHGQLKLPDEDIVFTISFF 248
L I ++ R Y+ +F HS Y F++ + L ++ DE++V I
Sbjct: 200 LPIAAKRGAADKVRLLSRNYLQRFRHSPYMRDFMAQFVDTTLKLSDRIGDEELVKLIGSA 259
Query: 249 SLEEQRAIYLKIAQNSVISGKRKIGFLAIKQLKRIIDRLDYKDLATIQLYENILNIPFVD 308
Q +YL+IA+ +++ G+ + + +++ L D LY ++
Sbjct: 260 DPLLQYTLYLQIARGALVDGQTERARFMSAEARKLAGHL-NADPTRANLYAAASDVASDS 318
Query: 309 IMSLQRSTCNIPYYSLMEQDRYLKKASEIIMSEIGKSL------------------IDID 350
S R I L E DR L KA+E + + + ++ D
Sbjct: 319 AGSALRELSQISPDHLQEPDRKLLKAAETVGAIVTRAPDTTSRAKRSADEREVPRMAVAD 378
Query: 351 FEHIQKDLLLDKKEPRHTNVS-----MGIESFIKKNRSQIESIDVLLAEA 395
+ L N + ++ ++ R ++ ID LL +
Sbjct: 379 APQLPAQQTLSAPVEVDFNPARTRSEADLQKTMENARRKLAEIDALLGKT 428
>gi|17984290|gb|AAL53396.1| chemotaxis motc protein precursor [Brucella melitensis bv. 1 str.
16M]
Length = 397
Score = 326 bits (836), Expect = 3e-87, Method: Composition-based stats.
Identities = 83/390 (21%), Positives = 145/390 (37%), Gaps = 25/390 (6%)
Query: 30 IVPYQCVRSLQRALDEAMRGDISLQKKIPDIVKETGVQLRATHMDVFVDNRNIDAVWIYT 89
+ PY+ VRSL+ D+ + G + ++ + +V+ NI A IY
Sbjct: 7 LEPYKLVRSLRMLQDQVVAGKPEAVVMLNKLLGFVSTDMSRAQPEVWDKPENIYAAIIYL 66
Query: 90 IISQDLSVVDDLIAKDTKGYFDIAIVYALKKYFSGQLEESSKELSKIKDKDNTRGIVPYL 149
+ V ++A +V Y SGQ E K S + + +
Sbjct: 67 FNGGNPEAVRKVLANLKTDTVPQELVKGALAYASGQTIEVVKLFSVPLAPEVPAELKASI 126
Query: 150 HLLIGRAMMPFSSQQAVHFFDYVRLTSPGTFLEEIALRNLLEITQN-EVGERAFGYIRAY 208
L+ MM F A+ D VRL +PGT EE A+R L I ++ R Y
Sbjct: 127 VLVTANQMMAFDPATALLRLDQVRLEAPGTLFEEAAIRRSLPIAAKRGAADKVRLLSRNY 186
Query: 209 VTQFHHSIYKDHFISVLLRFFLHGQLKLPDEDIVFTISFFSLEEQRAIYLKIAQNSVISG 268
+ +F HS Y F++ + L ++ DE++V I Q +YL+IA+ +++ G
Sbjct: 187 LQRFRHSPYMRDFMAQFVDTTLKLSDRIGDEELVKLIGSADPLLQYTLYLQIARGALVDG 246
Query: 269 KRKIGFLAIKQLKRIIDRLDYKDLATIQLYENILNIPFVDIMSLQRSTCNIPYYSLMEQD 328
+ + + +++ L D LY ++ S R I L E D
Sbjct: 247 QTERARFMSAEARKLAGHL-NADPTRANLYAAASDVASDSAGSALRELSQISPDHLQEPD 305
Query: 329 RYLKKASEIIMSEIGKSL------------------IDIDFEHIQKDLLLDKKEPRHTNV 370
R L KA+E + + + ++ D + L N
Sbjct: 306 RKLLKAAETVGAIVTRAPDTTSRAKRSADEREVPRMAVADAPQLPAQQTLSAPVEVDFNP 365
Query: 371 S-----MGIESFIKKNRSQIESIDVLLAEA 395
+ ++ ++ R ++ ID LL +
Sbjct: 366 ARTRSEADLQKTMENARRKLAEIDALLGKT 395
>gi|62317961|ref|YP_223814.1| chemotaxis protein [Brucella abortus bv. 1 str. 9-941]
gi|83269938|ref|YP_419229.1| chemotaxis protein [Brucella melitensis biovar Abortus 2308]
gi|161621186|ref|YP_001595072.1| chemotaxis protein [Brucella canis ATCC 23365]
gi|163845461|ref|YP_001623116.1| chemotaxis protein [Brucella suis ATCC 23445]
gi|189023212|ref|YP_001932953.1| chemotaxis protein [Brucella abortus S19]
gi|225628432|ref|ZP_03786466.1| chemotaxis protein [Brucella ceti str. Cudo]
gi|225686889|ref|YP_002734861.1| chemotaxis protein [Brucella melitensis ATCC 23457]
gi|237817508|ref|ZP_04596498.1| chemotaxis protein [Brucella abortus str. 2308 A]
gi|254691606|ref|ZP_05154860.1| chemotaxis protein [Brucella abortus bv. 6 str. 870]
gi|254698193|ref|ZP_05160021.1| chemotaxis protein [Brucella abortus bv. 2 str. 86/8/59]
gi|254699265|ref|ZP_05161093.1| chemotaxis protein [Brucella suis bv. 5 str. 513]
gi|254702389|ref|ZP_05164217.1| chemotaxis protein [Brucella suis bv. 3 str. 686]
gi|254706493|ref|ZP_05168321.1| chemotaxis protein [Brucella pinnipedialis M163/99/10]
gi|254711823|ref|ZP_05173634.1| chemotaxis protein [Brucella ceti M644/93/1]
gi|254714892|ref|ZP_05176703.1| chemotaxis protein [Brucella ceti M13/05/1]
gi|254731638|ref|ZP_05190216.1| chemotaxis protein [Brucella abortus bv. 4 str. 292]
gi|256015902|ref|YP_003105911.1| chemotaxis protein MotC [Brucella microti CCM 4915]
gi|256158328|ref|ZP_05456232.1| chemotaxis protein [Brucella ceti M490/95/1]
gi|256252738|ref|ZP_05458274.1| chemotaxis protein [Brucella ceti B1/94]
gi|256256794|ref|ZP_05462330.1| chemotaxis protein [Brucella abortus bv. 9 str. C68]
gi|256261974|ref|ZP_05464506.1| chemotaxis motc protein [Brucella melitensis bv. 2 str. 63/9]
gi|260166799|ref|ZP_05753610.1| chemotaxis protein [Brucella sp. F5/99]
gi|260544146|ref|ZP_05819967.1| chemotaxis motc protein [Brucella abortus NCTC 8038]
gi|260568710|ref|ZP_05839179.1| chemotaxis motc protein [Brucella suis bv. 4 str. 40]
gi|260757238|ref|ZP_05869586.1| chemotaxis protein [Brucella abortus bv. 6 str. 870]
gi|260759397|ref|ZP_05871745.1| chemotaxis protein [Brucella abortus bv. 4 str. 292]
gi|260762640|ref|ZP_05874972.1| chemotaxis protein [Brucella abortus bv. 2 str. 86/8/59]
gi|260883042|ref|ZP_05894656.1| chemotaxis protein [Brucella abortus bv. 9 str. C68]
gi|261216581|ref|ZP_05930862.1| chemotaxis protein [Brucella ceti M13/05/1]
gi|261219817|ref|ZP_05934098.1| chemotaxis protein [Brucella ceti B1/94]
gi|261313946|ref|ZP_05953143.1| chemotaxis protein [Brucella pinnipedialis M163/99/10]
gi|261319451|ref|ZP_05958648.1| chemotaxis protein [Brucella ceti M644/93/1]
gi|261749707|ref|ZP_05993416.1| chemotaxis protein [Brucella suis bv. 5 str. 513]
gi|261752950|ref|ZP_05996659.1| chemotaxis protein [Brucella suis bv. 3 str. 686]
gi|261756177|ref|ZP_05999886.1| chemotaxis motc protein [Brucella sp. F5/99]
gi|265996842|ref|ZP_06109399.1| chemotaxis protein [Brucella ceti M490/95/1]
gi|297250147|ref|ZP_06933848.1| chemotaxis protein MotC [Brucella abortus bv. 5 str. B3196]
gi|62198154|gb|AAX76453.1| hypothetical MotC chemotaxis protein [Brucella abortus bv. 1 str.
9-941]
gi|82940212|emb|CAJ13268.1| chemotaxis motc protein precursor [Brucella melitensis biovar
Abortus 2308]
gi|161337997|gb|ABX64301.1| Hypothetical protein BCAN_B1172 [Brucella canis ATCC 23365]
gi|163676184|gb|ABY40294.1| Hypothetical protein, conserved [Brucella suis ATCC 23445]
gi|189021786|gb|ACD74507.1| chemotaxis motc protein precursor [Brucella abortus S19]
gi|225616278|gb|EEH13326.1| chemotaxis protein [Brucella ceti str. Cudo]
gi|225642994|gb|ACO02907.1| Hypothetical protein, conserved [Brucella melitensis ATCC 23457]
gi|237787263|gb|EEP61481.1| chemotaxis protein [Brucella abortus str. 2308 A]
gi|255998562|gb|ACU50249.1| chemotaxis protein MotC [Brucella microti CCM 4915]
gi|260097417|gb|EEW81291.1| chemotaxis motc protein [Brucella abortus NCTC 8038]
gi|260155375|gb|EEW90456.1| chemotaxis motc protein [Brucella suis bv. 4 str. 40]
gi|260669715|gb|EEX56655.1| chemotaxis protein [Brucella abortus bv. 4 str. 292]
gi|260673061|gb|EEX59882.1| chemotaxis protein [Brucella abortus bv. 2 str. 86/8/59]
gi|260677346|gb|EEX64167.1| chemotaxis protein [Brucella abortus bv. 6 str. 870]
gi|260872570|gb|EEX79639.1| chemotaxis protein [Brucella abortus bv. 9 str. C68]
gi|260918401|gb|EEX85054.1| chemotaxis protein [Brucella ceti B1/94]
gi|260921670|gb|EEX88238.1| chemotaxis protein [Brucella ceti M13/05/1]
gi|261292141|gb|EEX95637.1| chemotaxis protein [Brucella ceti M644/93/1]
gi|261302972|gb|EEY06469.1| chemotaxis protein [Brucella pinnipedialis M163/99/10]
gi|261736161|gb|EEY24157.1| chemotaxis motc protein [Brucella sp. F5/99]
gi|261739460|gb|EEY27386.1| chemotaxis protein [Brucella suis bv. 5 str. 513]
gi|261742703|gb|EEY30629.1| chemotaxis protein [Brucella suis bv. 3 str. 686]
gi|262551139|gb|EEZ07300.1| chemotaxis protein [Brucella ceti M490/95/1]
gi|263091458|gb|EEZ15994.1| chemotaxis motc protein [Brucella melitensis bv. 2 str. 63/9]
gi|297174016|gb|EFH33380.1| chemotaxis protein MotC [Brucella abortus bv. 5 str. B3196]
gi|326411307|gb|ADZ68371.1| chemotaxis protein [Brucella melitensis M28]
gi|326554596|gb|ADZ89235.1| chemotaxis protein [Brucella melitensis M5-90]
Length = 430
Score = 326 bits (836), Expect = 3e-87, Method: Composition-based stats.
Identities = 86/410 (20%), Positives = 151/410 (36%), Gaps = 28/410 (6%)
Query: 13 AMDVFFSFATDQDLVRTI---VPYQCVRSLQRALDEAMRGDISLQKKIPDIVKETGVQLR 69
+ + A Q +R + PY+ VRSL+ D+ + G + ++ +
Sbjct: 20 GVAGGTACARAQPEMRPLPVLEPYKLVRSLRMLQDQVVAGKPEAVVMLNKLLGFVSTDMS 79
Query: 70 ATHMDVFVDNRNIDAVWIYTIISQDLSVVDDLIAKDTKGYFDIAIVYALKKYFSGQLEES 129
+V+ NI A IY + V ++A +V Y SGQ E
Sbjct: 80 RAQPEVWDKPENIYAAIIYLFNGGNPEAVRKVLANLKTDTVPQELVKGALAYASGQTIEV 139
Query: 130 SKELSKIKDKDNTRGIVPYLHLLIGRAMMPFSSQQAVHFFDYVRLTSPGTFLEEIALRNL 189
K S + + + L+ MM F A+ D VRL +PGT EE A+R
Sbjct: 140 VKLFSVPLAPEVPAELKASIVLVTANQMMAFDPATALLRLDQVRLEAPGTLFEEAAIRRS 199
Query: 190 LEITQN-EVGERAFGYIRAYVTQFHHSIYKDHFISVLLRFFLHGQLKLPDEDIVFTISFF 248
L I ++ R Y+ +F HS Y F++ + L ++ DE++V I
Sbjct: 200 LPIAAKLGAADKVRLLSRNYLQRFRHSPYMRDFMAQFVDTTLKLSDRIGDEELVKLIGSA 259
Query: 249 SLEEQRAIYLKIAQNSVISGKRKIGFLAIKQLKRIIDRLDYKDLATIQLYENILNIPFVD 308
Q +YL+IA+ +++ G+ + + +++ L D LY ++
Sbjct: 260 DPLLQYTLYLQIARGALVDGQTERARFMSAEARKLAGHL-NADPTRANLYAAASDVASDS 318
Query: 309 IMSLQRSTCNIPYYSLMEQDRYLKKASEIIMSEIGKSL------------------IDID 350
S R I L E DR L KA+E + + + ++ D
Sbjct: 319 AGSALRELSQISPDHLQEPDRKLLKAAETVGAIVTRAPDTTSRAKRSADEREVPRMAVAD 378
Query: 351 FEHIQKDLLLDKKEPRHTNVS-----MGIESFIKKNRSQIESIDVLLAEA 395
+ L N + ++ ++ R ++ ID LL +
Sbjct: 379 APQLPAQQTLSAPVEVDFNSARTRSEADLQKTMENARRKLAEIDALLGKT 428
>gi|148558481|ref|YP_001258007.1| chemotaxis protein [Brucella ovis ATCC 25840]
gi|148369766|gb|ABQ62638.1| putative chemotaxis motC protein [Brucella ovis ATCC 25840]
Length = 397
Score = 326 bits (835), Expect = 5e-87, Method: Composition-based stats.
Identities = 83/390 (21%), Positives = 145/390 (37%), Gaps = 25/390 (6%)
Query: 30 IVPYQCVRSLQRALDEAMRGDISLQKKIPDIVKETGVQLRATHMDVFVDNRNIDAVWIYT 89
+ PY+ VRSL+ D+ + G + ++ + +V+ NI A IY
Sbjct: 7 LEPYKLVRSLRMLQDQVVAGKPEAVVMLNKLLGFVSTDMSRAQPEVWDKPENIYAAIIYL 66
Query: 90 IISQDLSVVDDLIAKDTKGYFDIAIVYALKKYFSGQLEESSKELSKIKDKDNTRGIVPYL 149
+ V ++A +V Y SGQ E K S + + +
Sbjct: 67 FNGGNPEAVRKVLANLKTDTVPQELVKGALAYASGQTIEVVKLFSVPLAPEVPAELKASI 126
Query: 150 HLLIGRAMMPFSSQQAVHFFDYVRLTSPGTFLEEIALRNLLEITQN-EVGERAFGYIRAY 208
L+ MM F A+ D VRL +PGT EE A+R L I ++ R Y
Sbjct: 127 VLVTANQMMAFDPATALLRLDQVRLEAPGTLFEEAAIRRSLPIAAKLGAADKVRLLSRNY 186
Query: 209 VTQFHHSIYKDHFISVLLRFFLHGQLKLPDEDIVFTISFFSLEEQRAIYLKIAQNSVISG 268
+ +F HS Y F++ + L ++ DE++V I Q +YL+IA+ +++ G
Sbjct: 187 LQRFRHSPYMRDFMAQFVDTTLKLSDRIGDEELVKLIGSADPLLQYTLYLQIARGALVDG 246
Query: 269 KRKIGFLAIKQLKRIIDRLDYKDLATIQLYENILNIPFVDIMSLQRSTCNIPYYSLMEQD 328
+ + + +++ L D LY ++ S R I L E D
Sbjct: 247 QTERARFMSAEARKLAGHL-NADPTRANLYAAASDVASDSAGSALRELSQISPDHLQEPD 305
Query: 329 RYLKKASEIIMSEIGKSL------------------IDIDFEHIQKDLLLDKKEPRHTNV 370
R L KA+E + + + ++ D + L N
Sbjct: 306 RKLLKAAETVGAIVTRAPDTTSRAKRSADEREVPRMAVADAPQLPAQQTLSAPVEVDFNS 365
Query: 371 S-----MGIESFIKKNRSQIESIDVLLAEA 395
+ ++ ++ R ++ ID LL +
Sbjct: 366 ARTRSEADLQKTMENARRKLAEIDALLGKT 395
>gi|254720769|ref|ZP_05182580.1| chemotaxis protein [Brucella sp. 83/13]
gi|265985827|ref|ZP_06098562.1| chemotaxis protein [Brucella sp. 83/13]
gi|306840140|ref|ZP_07472925.1| chemotaxis protein [Brucella sp. NF 2653]
gi|264664419|gb|EEZ34680.1| chemotaxis protein [Brucella sp. 83/13]
gi|306404785|gb|EFM61079.1| chemotaxis protein [Brucella sp. NF 2653]
Length = 430
Score = 325 bits (833), Expect = 8e-87, Method: Composition-based stats.
Identities = 82/390 (21%), Positives = 145/390 (37%), Gaps = 25/390 (6%)
Query: 30 IVPYQCVRSLQRALDEAMRGDISLQKKIPDIVKETGVQLRATHMDVFVDNRNIDAVWIYT 89
+ PY+ VRSL+ D+ + G + ++ + +V+ NI A IY
Sbjct: 40 LEPYKLVRSLRMLQDQVVAGKPEAVVMLNKLLGFVSTDMGRAQPEVWDKPENIYAAIIYL 99
Query: 90 IISQDLSVVDDLIAKDTKGYFDIAIVYALKKYFSGQLEESSKELSKIKDKDNTRGIVPYL 149
+ V ++A +V Y SGQ E K S + + +
Sbjct: 100 FNGGNPEAVRKVLANLKSDTVSQELVKGALAYASGQTIEVVKLFSVPLAPEVPAELKASI 159
Query: 150 HLLIGRAMMPFSSQQAVHFFDYVRLTSPGTFLEEIALRNLLEITQN-EVGERAFGYIRAY 208
L+ MM F A+ D VRL +PGT EE A+R L I ++ R Y
Sbjct: 160 VLVTANQMMAFDPATALLRLDQVRLEAPGTLFEEAAIRRSLPIAAKLGDADKVRLLSRNY 219
Query: 209 VTQFHHSIYKDHFISVLLRFFLHGQLKLPDEDIVFTISFFSLEEQRAIYLKIAQNSVISG 268
+ +F HS Y F++ + L ++ +E++V I Q +YL+IA+ +++ G
Sbjct: 220 LQRFRHSPYMRDFMAQFVDTTLKLSDRIGNEELVKLIGSADPLLQYTLYLQIARGALVDG 279
Query: 269 KRKIGFLAIKQLKRIIDRLDYKDLATIQLYENILNIPFVDIMSLQRSTCNIPYYSLMEQD 328
+ + + +++ L D LY ++ S R I L E D
Sbjct: 280 QTERARFMSAEARKLAGHL-NADPTRANLYAAASDVASDSAGSALRELSQISPDHLQEPD 338
Query: 329 RYLKKASEIIMSEIGKSL------------------IDIDFEHIQKDLLLDKKEPRHTNV 370
R L KA+E + + + ++ D + L N
Sbjct: 339 RKLLKAAETVGAIVTRAPDTTPPAKRSADEREVPRMAVADAPQLPAQQALSAPVEVDFNS 398
Query: 371 S-----MGIESFIKKNRSQIESIDVLLAEA 395
+ ++ ++ R ++ ID LL +
Sbjct: 399 ARTRSEADLQKTMENARRKLAEIDALLGKT 428
>gi|239834430|ref|ZP_04682758.1| chemotaxis protein [Ochrobactrum intermedium LMG 3301]
gi|239822493|gb|EEQ94062.1| chemotaxis protein [Ochrobactrum intermedium LMG 3301]
Length = 437
Score = 325 bits (833), Expect = 9e-87, Method: Composition-based stats.
Identities = 78/394 (19%), Positives = 144/394 (36%), Gaps = 29/394 (7%)
Query: 30 IVPYQCVRSLQRALDEAMRGDISLQKKIPDIVKETGVQLRATHMDVFVDNRNIDAVWIYT 89
+ PY+ VRSL+ D+ + G + ++ + DV+ + N+ A IY
Sbjct: 43 LEPYKLVRSLRMLQDQIVAGKPEAVVMLNKLLGFVSTDMGRASGDVWHNPENVYAAIIYL 102
Query: 90 IISQDLSVVDDLIAKDTKGYFDIAIVYALKKYFSGQLEESSKELSKIKDKDNTRGIVPYL 149
+ V ++A +V Y SGQ E K S D + +
Sbjct: 103 FNGGNPEAVRKVLADLKTDAVPPELVKGALAYASGQTIEVVKLFSVPLAPDVPSELKASI 162
Query: 150 HLLIGRAMMPFSSQQAVHFFDYVRLTSPGTFLEEIALRNLLEITQN-EVGERAFGYIRAY 208
L+ M F A+ D VRL +PGT EE A+R + I ++ R Y
Sbjct: 163 VLVTASQMTAFDPATALMRLDQVRLDAPGTLFEEAAIRRSMPIAARLGDADKIRLLARNY 222
Query: 209 VTQFHHSIYKDHFISVLLRFFLHGQLKLPDEDIVFTISFFSLEEQRAIYLKIAQNSVISG 268
+ +F S Y F++ + + ++ + ++ I Q ++YL+IA+ +++ G
Sbjct: 223 LQRFPRSPYMRDFMAQFVDAAVKLNDRIGNAELARLIGSADPVMQYSLYLQIARGALVDG 282
Query: 269 KRKIGFLAIKQLKRIIDRLDYKDLATIQLYENILNIPFVDIMSLQRSTCNIPYYSLMEQD 328
+ + + K++ D+L D LY ++ S R I L E D
Sbjct: 283 QTERARFMSAEAKKLADKLK-TDPTRANLYAAASDVASDSAGSALRELSQISPDKLQEPD 341
Query: 329 RYLKKASEIIMSEIGKSL-------IDIDFEHIQKDLLLDKKEPRHTNVSMGI------- 374
R L KA+E + + + ++ + + + E R
Sbjct: 342 RKLLKAAEAVGTVVTRTPDASPPAKPALTERDVPPMATANPPENRAEKPVANPAAAPMAV 401
Query: 375 -------------ESFIKKNRSQIESIDVLLAEA 395
+ ++ R ++ ID LL +
Sbjct: 402 SLKPVKNQPEDDLQKTMEDARRKLAEIDALLGKT 435
>gi|254711222|ref|ZP_05173033.1| chemotaxis protein [Brucella pinnipedialis B2/94]
gi|256030149|ref|ZP_05443763.1| chemotaxis protein [Brucella pinnipedialis M292/94/1]
gi|261318814|ref|ZP_05958011.1| chemotaxis protein [Brucella pinnipedialis B2/94]
gi|265987179|ref|ZP_06099736.1| chemotaxis protein [Brucella pinnipedialis M292/94/1]
gi|261298037|gb|EEY01534.1| chemotaxis protein [Brucella pinnipedialis B2/94]
gi|264659376|gb|EEZ29637.1| chemotaxis protein [Brucella pinnipedialis M292/94/1]
Length = 430
Score = 325 bits (832), Expect = 1e-86, Method: Composition-based stats.
Identities = 86/410 (20%), Positives = 151/410 (36%), Gaps = 28/410 (6%)
Query: 13 AMDVFFSFATDQDLVRTI---VPYQCVRSLQRALDEAMRGDISLQKKIPDIVKETGVQLR 69
+ + A Q +R + PY+ VRSL+ D+ + G + ++ +
Sbjct: 20 GVAGGTACARAQPEMRPLPVLEPYKLVRSLRMLQDQVVAGKPEAVVMLNKLLGFVSTDMS 79
Query: 70 ATHMDVFVDNRNIDAVWIYTIISQDLSVVDDLIAKDTKGYFDIAIVYALKKYFSGQLEES 129
+V+ NI A IY + V ++A +V Y SGQ E
Sbjct: 80 RAQPEVWDKPENIYAAIIYLFNGGNPEAVRKVLANLKTDTVPQELVKGALAYASGQTIEV 139
Query: 130 SKELSKIKDKDNTRGIVPYLHLLIGRAMMPFSSQQAVHFFDYVRLTSPGTFLEEIALRNL 189
K S + + + L+ MM F A+ D VRL +PGT EE A+R
Sbjct: 140 VKLFSVPLAPEVPAELKASIVLVTANQMMAFDPATALLRLDQVRLEAPGTLFEEAAIRRS 199
Query: 190 LEITQN-EVGERAFGYIRAYVTQFHHSIYKDHFISVLLRFFLHGQLKLPDEDIVFTISFF 248
L I ++ R Y+ +F HS Y F++ + L ++ DE++V I
Sbjct: 200 LPIAAKLGAADKVRLLSRNYLQRFRHSPYMRDFMAQFVDTTLKLSDRIGDEELVKLIGSA 259
Query: 249 SLEEQRAIYLKIAQNSVISGKRKIGFLAIKQLKRIIDRLDYKDLATIQLYENILNIPFVD 308
Q +YL+IA+ +++ G+ + + +++ L D LY ++
Sbjct: 260 DPLLQYTLYLQIARGALVDGQTERARFISAEARKLAGHL-NADPTRANLYAAASDVASDS 318
Query: 309 IMSLQRSTCNIPYYSLMEQDRYLKKASEIIMSEIGKSL------------------IDID 350
S R I L E DR L KA+E + + + ++ D
Sbjct: 319 AGSALRELSQISPDHLQEPDRKLLKAAETVGAIVTRAPDTTSRAKRSADEREVPRMAVAD 378
Query: 351 FEHIQKDLLLDKKEPRHTNVS-----MGIESFIKKNRSQIESIDVLLAEA 395
+ L N + ++ ++ R ++ ID LL +
Sbjct: 379 APQLPAQQTLSAPVEVDFNSARTRSEADLQKTMENARRKLAEIDALLGKT 428
>gi|256112173|ref|ZP_05453094.1| chemotaxis protein [Brucella melitensis bv. 3 str. Ether]
gi|265993599|ref|ZP_06106156.1| chemotaxis protein [Brucella melitensis bv. 3 str. Ether]
gi|262764469|gb|EEZ10501.1| chemotaxis protein [Brucella melitensis bv. 3 str. Ether]
Length = 430
Score = 324 bits (831), Expect = 1e-86, Method: Composition-based stats.
Identities = 86/410 (20%), Positives = 150/410 (36%), Gaps = 28/410 (6%)
Query: 13 AMDVFFSFATDQDLVRTI---VPYQCVRSLQRALDEAMRGDISLQKKIPDIVKETGVQLR 69
+ + A Q +R + PY+ VRSL+ D+ + G + ++ +
Sbjct: 20 GVAGGTACARAQPEMRPLPVLEPYKLVRSLRMLQDQVVAGKPEAVVMLNKLLGFVSTDMS 79
Query: 70 ATHMDVFVDNRNIDAVWIYTIISQDLSVVDDLIAKDTKGYFDIAIVYALKKYFSGQLEES 129
+V+ NI A IY + V +A +V Y SGQ E
Sbjct: 80 RAQPEVWDKPENIYAAIIYLFNGGNPEAVRKALANLKTDTVPQELVKGALAYASGQTIEV 139
Query: 130 SKELSKIKDKDNTRGIVPYLHLLIGRAMMPFSSQQAVHFFDYVRLTSPGTFLEEIALRNL 189
K S + + + L+ MM F A+ D VRL +PGT EE A+R
Sbjct: 140 VKLFSVPLAPEVPAELKASIVLVTANQMMAFDPATALLRLDQVRLEAPGTLFEEAAIRRS 199
Query: 190 LEITQN-EVGERAFGYIRAYVTQFHHSIYKDHFISVLLRFFLHGQLKLPDEDIVFTISFF 248
L I ++ R Y+ +F HS Y F++ + L ++ DE++V I
Sbjct: 200 LPIAAKLGAADKVRLLSRNYLQRFRHSPYMRDFMAQFVDTTLKLSDRIGDEELVKLIGSA 259
Query: 249 SLEEQRAIYLKIAQNSVISGKRKIGFLAIKQLKRIIDRLDYKDLATIQLYENILNIPFVD 308
Q +YL+IA+ +++ G+ + + +++ L D LY ++
Sbjct: 260 DPLLQYTLYLQIARGALVDGQTERARFMSAEARKLAGHL-NADPTRANLYAAASDVASDS 318
Query: 309 IMSLQRSTCNIPYYSLMEQDRYLKKASEIIMSEIGKSL------------------IDID 350
S R I L E DR L KA+E + + + ++ D
Sbjct: 319 AGSALRELSQISPDHLQEPDRKLLKAAETVGAIVTRAPDTTSRAKRSADEREVPRMAVAD 378
Query: 351 FEHIQKDLLLDKKEPRHTNVS-----MGIESFIKKNRSQIESIDVLLAEA 395
+ L N + ++ ++ R ++ ID LL +
Sbjct: 379 APQLPAQQTLSAPVEVDFNSARTRSEADLQKTMENARRKLAEIDALLGKT 428
>gi|256059800|ref|ZP_05449995.1| chemotaxis protein [Brucella neotomae 5K33]
gi|261323780|ref|ZP_05962977.1| chemotaxis protein [Brucella neotomae 5K33]
gi|261299760|gb|EEY03257.1| chemotaxis protein [Brucella neotomae 5K33]
Length = 424
Score = 322 bits (825), Expect = 7e-86, Method: Composition-based stats.
Identities = 85/388 (21%), Positives = 148/388 (38%), Gaps = 9/388 (2%)
Query: 13 AMDVFFSFATDQDLVRTI---VPYQCVRSLQRALDEAMRGDISLQKKIPDIVKETGVQLR 69
+ + A Q +R + PY+ VRSL+ D+ + G + ++ +
Sbjct: 20 GVAGGTACARAQPEMRPLPVLEPYKLVRSLRMLQDQVVAGKPEAVVMLNKLLGFVSTDMS 79
Query: 70 ATHMDVFVDNRNIDAVWIYTIISQDLSVVDDLIAKDTKGYFDIAIVYALKKYFSGQLEES 129
+V+ NI A IY + V ++A +V Y SGQ E
Sbjct: 80 RAQPEVWDKPENIYAAIIYLFNGGNPEAVRKVLANLKTDTVPQELVKGALAYASGQTIEV 139
Query: 130 SKELSKIKDKDNTRGIVPYLHLLIGRAMMPFSSQQAVHFFDYVRLTSPGTFLEEIALRNL 189
K S + + + L+ MM F A+ D VRL +PGT EE A+R
Sbjct: 140 VKLFSVPLAPEVPAELKASIVLVTANQMMAFDPATALLRLDQVRLEAPGTLFEEAAIRRS 199
Query: 190 LEITQN-EVGERAFGYIRAYVTQFHHSIYKDHFISVLLRFFLHGQLKLPDEDIVFTISFF 248
L I ++ R Y+ +F HS Y F++ + L ++ DE++V I
Sbjct: 200 LPIAAKLGAADKVRLLSRNYLQRFRHSPYMRDFMAQFVDTTLKLSDRIGDEELVKLIGSA 259
Query: 249 SLEEQRAIYLKIAQNSVISGKRKIGFLAIKQLKRIIDRLDYKDLATIQLYENILNIPFVD 308
Q +YL+IA+ +++ G+ + + +++ L D LY ++
Sbjct: 260 DPLLQYTLYLQIARGALVDGQTERARFMSAEARKLAGHL-NADPTRANLYAAASDVASDS 318
Query: 309 IMSLQRSTCNIPYYSLMEQDRYLKKASEIIMSEIGKSLIDIDFEHIQKDLLLDKKEPRHT 368
S R I L E DR L KA+E + + + ++ D++E
Sbjct: 319 AGSALRELSQISPDHLQEPDRKLLKAAETVGAIVTRAPDTTSRAKR----SADEREVPRM 374
Query: 369 NVSMGIESFIKKNRSQIESIDVLLAEAR 396
V+ + ++ S +D A R
Sbjct: 375 AVADAPQLPAQQTLSAPVEVDFNSARTR 402
>gi|294852973|ref|ZP_06793645.1| chemotaxis protein MotC [Brucella sp. NVSL 07-0026]
gi|294818628|gb|EFG35628.1| chemotaxis protein MotC [Brucella sp. NVSL 07-0026]
Length = 430
Score = 321 bits (822), Expect = 1e-85, Method: Composition-based stats.
Identities = 85/410 (20%), Positives = 150/410 (36%), Gaps = 28/410 (6%)
Query: 13 AMDVFFSFATDQDLVRTI---VPYQCVRSLQRALDEAMRGDISLQKKIPDIVKETGVQLR 69
+ + A Q +R + PY+ VRSL+ D+ + + ++ +
Sbjct: 20 GVAGGTACARAQPEMRPLPVLEPYKLVRSLRMLQDQVVADKPEAVVMLNKLLGFVSTDMS 79
Query: 70 ATHMDVFVDNRNIDAVWIYTIISQDLSVVDDLIAKDTKGYFDIAIVYALKKYFSGQLEES 129
+V+ NI A IY + V ++A +V Y SGQ E
Sbjct: 80 RAQPEVWDKPENIYAAIIYLFNGGNPEAVRKVLANLKTDTVPQELVKGALAYASGQTIEV 139
Query: 130 SKELSKIKDKDNTRGIVPYLHLLIGRAMMPFSSQQAVHFFDYVRLTSPGTFLEEIALRNL 189
K S + + + L+ MM F A+ D VRL +PGT EE A+R
Sbjct: 140 VKLFSVPLAPEVPAELKASIVLVTANQMMAFDPATALLRLDQVRLEAPGTLFEEAAIRRS 199
Query: 190 LEITQN-EVGERAFGYIRAYVTQFHHSIYKDHFISVLLRFFLHGQLKLPDEDIVFTISFF 248
L I ++ R Y+ +F HS Y F++ + L ++ DE++V I
Sbjct: 200 LPIAAKLGAADKVRLLSRNYLQRFRHSPYMRDFMAQFVDTTLKLSDRIGDEELVKLIGSA 259
Query: 249 SLEEQRAIYLKIAQNSVISGKRKIGFLAIKQLKRIIDRLDYKDLATIQLYENILNIPFVD 308
Q +YL+IA+ +++ G+ + + +++ L D LY ++
Sbjct: 260 DPLLQYTLYLQIARGALVDGQTERARFMSAEARKLAGHL-NADPTRANLYAAASDVASDS 318
Query: 309 IMSLQRSTCNIPYYSLMEQDRYLKKASEIIMSEIGKSL------------------IDID 350
S R I L E DR L KA+E + + + ++ D
Sbjct: 319 AGSALRELSQISPDHLQEPDRKLLKAAETVEAIVTRAPDTTSRAKRSADEREVPRMAVAD 378
Query: 351 FEHIQKDLLLDKKEPRHTNVS-----MGIESFIKKNRSQIESIDVLLAEA 395
+ L N + ++ ++ R ++ ID LL +
Sbjct: 379 APQLPAQQTLSAPVEVDFNSARTRSEADLQKTMENARRKLAEIDALLGKT 428
>gi|254695097|ref|ZP_05156925.1| chemotaxis protein [Brucella abortus bv. 3 str. Tulya]
gi|261215448|ref|ZP_05929729.1| chemotaxis protein [Brucella abortus bv. 3 str. Tulya]
gi|260917055|gb|EEX83916.1| chemotaxis protein [Brucella abortus bv. 3 str. Tulya]
Length = 435
Score = 321 bits (822), Expect = 2e-85, Method: Composition-based stats.
Identities = 86/415 (20%), Positives = 151/415 (36%), Gaps = 33/415 (7%)
Query: 13 AMDVFFSFATDQDLVRTI---VPYQCVRSLQRALDEAMRGDISLQKKIPDIVKETGVQLR 69
+ + A Q +R + PY+ VRSL+ D+ + G + ++ +
Sbjct: 20 GVAGGTACARAQPEMRPLPVLEPYKLVRSLRMLQDQVVAGKPEAVVMLNKLLGFVSTDMS 79
Query: 70 ATHMDVFVDNRNIDAVWIYTIISQDLSVVDDLIAKDTKGYFDIAIVYALKKYFSGQLEES 129
+V+ NI A IY + V ++A +V Y SGQ E
Sbjct: 80 RAQPEVWDKPENIYAAIIYLFNGGNPEAVRKVLANLKTDTVPQELVKGALAYASGQTIEV 139
Query: 130 SKELSKIKDKDNTRGIVPYLHLLIGRAMMPFSSQQAV-----HFFDYVRLTSPGTFLEEI 184
K S + + + L+ MM F A+ D VRL +PGT EE
Sbjct: 140 VKLFSVPLAPEVPAELKASIVLVTANQMMAFDPATALLRLDQVRLDQVRLEAPGTLFEEA 199
Query: 185 ALRNLLEITQN-EVGERAFGYIRAYVTQFHHSIYKDHFISVLLRFFLHGQLKLPDEDIVF 243
A+R L I ++ R Y+ +F HS Y F++ + L ++ DE++V
Sbjct: 200 AIRRSLPIAAKLGAADKVRLLSRNYLQRFRHSPYMRDFMAQFVDTTLKLSDRIGDEELVK 259
Query: 244 TISFFSLEEQRAIYLKIAQNSVISGKRKIGFLAIKQLKRIIDRLDYKDLATIQLYENILN 303
I Q +YL+IA+ +++ G+ + + +++ L D LY +
Sbjct: 260 LIGSADPLLQYTLYLQIARGALVDGQTERARFMSAEARKLAGHL-NADPTRANLYAAASD 318
Query: 304 IPFVDIMSLQRSTCNIPYYSLMEQDRYLKKASEIIMSEIGKSL----------------- 346
+ S R I L E DR L KA+E + + + ++
Sbjct: 319 VASDSAGSALRELSQISPDHLQEPDRKLLKAAETVGAIVTRAPDTTSRAKRSADEREVPR 378
Query: 347 -IDIDFEHIQKDLLLDKKEPRHTNVS-----MGIESFIKKNRSQIESIDVLLAEA 395
D + L N + ++ ++ R ++ ID LL +
Sbjct: 379 MAVADAPQLPAQQTLSAPVEVDFNSARTRSEADLQKTMENARRKLAEIDALLGKT 433
>gi|110632644|ref|YP_672852.1| chemotaxis protein [Mesorhizobium sp. BNC1]
gi|110283628|gb|ABG61687.1| chemotaxis precursor (motility protein C) transmembrane
[Chelativorans sp. BNC1]
Length = 391
Score = 319 bits (817), Expect = 6e-85, Method: Composition-based stats.
Identities = 88/387 (22%), Positives = 150/387 (38%), Gaps = 7/387 (1%)
Query: 13 AMDVFFSFATDQDLVRTIVPYQCVRSLQRALDEAMRGDISLQKKIPDIVKETGVQLRATH 72
AM T + PYQ +RSLQ D GD + ++ +L
Sbjct: 8 AMLAACVSLTASANAEGLEPYQMIRSLQLVQDRIADGDHAALPIQRRLLAIIDERLHTAD 67
Query: 73 MDVFVDNRNIDAVWIYTIISQDLSVVDDLIAKDTKGYFDIAIVYALKKYFSGQLEESSKE 132
F + N A+ IY+ + + +D +I++ + L +Y G L + +
Sbjct: 68 ---FENPHNFRALLIYSASGGNPATLDAVISRLKLDEDQSRLSNGLTQYARGDLRAAREM 124
Query: 133 LSKIKDKDNTRGIVPYLHLLIGRAMMPFSSQQAVHFFDYVRLTSPGTFLEEIALRNLLEI 192
LS + + L L+IG + + +A+ FFD RL SPGT +EE ALR L +
Sbjct: 125 LSATELSTLDPELAAPLALVIGSLLAQQAPTEALRFFDQARLISPGTLIEEAALRRSLTL 184
Query: 193 TQN-EVGERAFGYIRAYVTQFHHSIYKDHFISVLLRFFLHGQLKLPDEDIVFTISFFSLE 251
+ ER R Y +F S Y F + + + ++ + ++ +
Sbjct: 185 SAELRDPERFALASRQYAWRFLRSPYASQFAEAFVSGVVALRGEIDLALVEEIVANMRRD 244
Query: 252 EQRAIYLKIAQNSVISGKRKIGFLAIKQLKRIIDRLDYKDLATIQLYENILNIPFVDIMS 311
+ IYL+IA+ S I G + A + + D D LY N+ + D+
Sbjct: 245 QAHVIYLRIARQSAIEGYDNLLTFASRNADKYADSGGGLDP-RSVLYGNMALVASEDVKD 303
Query: 312 LQRSTCNIPYYSLMEQDRYLKKASEIIMSEI-GKSLIDIDFEHIQKDLLLDKKEPRHTNV 370
+ + +I L DR L A+ + I + + Q +
Sbjct: 304 VLHTLEHIDAKRLSPNDRKLLNAAREVARNILSRPAAGSEASARQGSFPQGEAVVAQEGE 363
Query: 371 SMGI-ESFIKKNRSQIESIDVLLAEAR 396
+ +F+ ++SIDVL+AEAR
Sbjct: 364 DEQLNGAFVADTLKTLQSIDVLIAEAR 390
>gi|121602873|ref|YP_989387.1| chemotaxis protein [Bartonella bacilliformis KC583]
gi|120615050|gb|ABM45651.1| putative flagellar motor protein [Bartonella bacilliformis KC583]
Length = 456
Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats.
Identities = 86/382 (22%), Positives = 153/382 (40%), Gaps = 19/382 (4%)
Query: 31 VPYQCVRSLQRALDEAMRGDISLQKKIPDIVKETGVQLRATHMDVFVDNRNIDAVWIYTI 90
P Q VRSLQ D+ M G +K P++++E G + DV+ D N+ A+ IY +
Sbjct: 74 QPIQLVRSLQNLQDKIMSGQEGALQKQPELLREIGEKFLTLSPDVWQDEHNLYALLIYLL 133
Query: 91 ISQDLSVVDDLIAKDTKGYFDIAIVYALKKYFSGQLEESSKELSKIKDKD---NTRGIVP 147
+ VV ++ +G ++ Y S + EE + + + D++ +
Sbjct: 134 NGGNPRVVRIILEDHGQGRIAQNLITGALAYTSHRREEFFRAFANLSDQELQLLPPALFL 193
Query: 148 YLHLLIGRAMMPFSSQQAVHFFDYVRLTSPGTFLEEIALRNLLEITQN-EVGERAFGYIR 206
+ L A+ + VRL +PGT EE A+R L + E +R
Sbjct: 194 SIVLSTVTNTSEKDPALALKQLNQVRLLAPGTLFEESAIRRELRVAATLGKAELLMLLVR 253
Query: 207 AYVTQFHHSIYKDHFISVLLRFFLHGQLKLPDEDIVFTISFFSLEEQRAIYLKIAQNSVI 266
Y +F S Y ++F S + L DE +S+ Q Y ++++ ++I
Sbjct: 254 NYAHRFEKSPYVNNFWSEFRLAIPRIEKDLSDEQFETLVSYAPTMLQLMTYTEVSRAALI 313
Query: 267 SGKRKIGFLAIKQLKRIIDRLDYKDLATIQLYENILNIPFVDIMSLQRSTCNIPYYSLME 326
+ + L+ ++ + L+ D I+LY V + I L+E
Sbjct: 314 DARMERVKLSAQKALMLAHELNVSDAP-IRLYYAASLAGSVTAEEAAKMLQTISSNDLLE 372
Query: 327 QDRYLKKASEIIMSEIGKSLIDIDFE-------HIQKDLLLDKKEPRH-------TNVSM 372
+DR L A++ I + SL D Q L+ + R +++
Sbjct: 373 RDRPLLTAAQAIADRVSFSLSDDSQTVETQALISSQSQETLETQSKRRVGQQSDLPSIAT 432
Query: 373 GIESFIKKNRSQIESIDVLLAE 394
+ FI++ R +I +D LL E
Sbjct: 433 ETDQFIEQTREKINIVDKLLGE 454
>gi|170748096|ref|YP_001754356.1| chemotaxis protein [Methylobacterium radiotolerans JCM 2831]
gi|170654618|gb|ACB23673.1| putative chemotaxis protein precursor [Methylobacterium
radiotolerans JCM 2831]
Length = 415
Score = 315 bits (807), Expect = 7e-84, Method: Composition-based stats.
Identities = 78/369 (21%), Positives = 145/369 (39%), Gaps = 8/369 (2%)
Query: 32 PYQCVRSLQRALDEAMRGDISLQKKIPDIVKETGVQLRATHMDVFVDNRNIDAVWIYTII 91
P Q VR+LQ D G ++ + P ++ L A +++ N+ + + +
Sbjct: 48 PVQWVRTLQLLQDRVAAGSLAAHESQPLLIARINADLLAAPPEIWGRRNNLRSAITFALS 107
Query: 92 SQDLSVVDDLIAKDTKGYFDIAIVYALKKYFSGQLEESSKELSKIKDKDNTRGIVPYLHL 151
+V+ L A+D G + + Y G+ E+ + L + D + + L
Sbjct: 108 GGGPAVLRRLTARDGLGEPEATLARGALAYLEGREAEARRLLQDVDTTDLPPTLAGAVGL 167
Query: 152 LIGRAMMPFSSQQAVHFFDYVRLTSPGTFLEEIALRNLLE-ITQNEVGERAFGYIRAYVT 210
+ +A+ D VR+ PGT EE ALR + + Q + Y+
Sbjct: 168 TQASLAVTDQPARAIGLLDRVRVLLPGTLAEEGALRREIFTLGQIGDLKTFEALAIQYLR 227
Query: 211 QFHHSIYKDHFISVLL---RFFLHGQLKLPDEDIVFTISFFSLEEQRAIYLKIAQNSVIS 267
+F HS+Y +F L F G + + +S E +R +YL +AQ ++ +
Sbjct: 228 RFPHSVYAGNFRQRLAYQLTQFDIGHDEGRFGTLNRILSELRPESRRDLYLLVAQTAIQA 287
Query: 268 GKRKIGFLAIKQLKRIIDRLDYKDLATIQLYENILNIPF-VDIMSLQRSTCNIPYYSLME 326
GK A ++ + + QLY I S R+ ++ L
Sbjct: 288 GKTAAALRASEKALALCAP-GSAEATQGQLYRAAAEIVNLATFQSGLRTLRSLDRAKLTA 346
Query: 327 QDRYLKKASEIIMSEIGKSLIDIDFEHIQKDLLLDKKEPRHTNVSMGIESFIKKNRSQIE 386
+D+ L + + IG+ L + + L K + + G S I K ++ I+
Sbjct: 347 RDQLLLETALSTAGAIGRGL--AGRSGLPEADSLSKPARAARDPADGPASLIPKAQATID 404
Query: 387 SIDVLLAEA 395
ID++L++A
Sbjct: 405 RIDLMLSKA 413
>gi|115523190|ref|YP_780101.1| chemotaxis protein [Rhodopseudomonas palustris BisA53]
gi|115517137|gb|ABJ05121.1| putative chemotaxis protein precursor [Rhodopseudomonas palustris
BisA53]
Length = 395
Score = 315 bits (807), Expect = 9e-84, Method: Composition-based stats.
Identities = 82/395 (20%), Positives = 139/395 (35%), Gaps = 9/395 (2%)
Query: 7 ICTMMVAMDVFFSFATDQDLVRTI-VPYQCVRSLQRALDEAMRGDISLQKKIPDIVKETG 65
+ + +A+ A + + PYQ VRSLQ D+ RG++ P ++K G
Sbjct: 4 LAKVAIALLALLGSARADEAATSAREPYQLVRSLQSLQDQIARGNLEAHNAQPALLKRLG 63
Query: 66 VQLRATHMDVFVDNRNIDAVWIYTIISQDLSVVDDLIAKDTKGYFDIAIVYALKKYFSGQ 125
Q R +++ D RN A ++ + D VV L ++ D AI+ Y G+
Sbjct: 64 EQFRNADPNLWNDPRNSRAAVVFLLSGGDPQVVAALRSRKLL-SVDEAILDGAIAYVEGR 122
Query: 126 LEESSKELSKIKDKDNTRGIVPYLHLLIGRAMMPFSSQQAVHFFDYVRLTSPGTFLEEIA 185
EE+ L +K + + L + + V D VRL PGT +EE A
Sbjct: 123 SEEAKARLGGVKSGALPATLGAEITLAQSALLAQSDLKATVARLDEVRLLMPGTLIEEAA 182
Query: 186 LRNLLEIT-QNEVGERAFGYIRAYVTQFHHSIYKDHFISVLLRFFLHGQL---KLPDEDI 241
LR + + Q + ++ Y ++ HSIY +F +
Sbjct: 183 LRREIFLVGQIDDFDKFERLATQYFRRYRHSIYAGNFRQRFALSVARFSFVQQADRFPRL 242
Query: 242 VFTISFFSLEEQRAIYLKIAQNSVISGKRKIGFLAIKQLKRIIDRLDYKDLATIQLYENI 301
V + QRA+Y I + +++ GK ++ LA ++ + D + Y
Sbjct: 243 VGVLDHLDRGSQRALYFLITRTALVRGKTEMANLAAERAISLTDE-GTAERTRAYFYRAA 301
Query: 302 LNIPFVDIMSLQRSTCNIPYYSLMEQDRYLKKASEIIMSEIGKSLIDIDFEHIQKDLLLD 361
+ + L D L A+ + + K L E D
Sbjct: 302 ARLVSDGHEQALEDLQQLDTGRLSTPDANLLAAALALGRTVRKPLPAASTETDWDDGEPT 361
Query: 362 KKEPRHTNVSMGIESFIKKNRSQIESIDVLLAEAR 396
PR S I ++ L E +
Sbjct: 362 AVRPRIDFSSSIGA--IDLAEKLLDQSKDQLKERK 394
>gi|182679601|ref|YP_001833747.1| putative chemotaxis protein precursor [Beijerinckia indica subsp.
indica ATCC 9039]
gi|182635484|gb|ACB96258.1| putative chemotaxis protein precursor [Beijerinckia indica subsp.
indica ATCC 9039]
Length = 420
Score = 314 bits (805), Expect = 1e-83, Method: Composition-based stats.
Identities = 71/363 (19%), Positives = 136/363 (37%), Gaps = 8/363 (2%)
Query: 27 VRTIVPYQCVRSLQRALDEAMRGDISLQKKIPDIVKETGVQLRATHMDVFVDNRNIDAVW 86
P + VRS+ D+ + G ++ +P I+ + L A + DV+ D +NI+A+
Sbjct: 52 HPERSPVEIVRSIMTLQDQVVSGKKPVETAMPKIMSQMADHLLAQNPDVWKDPKNIEALI 111
Query: 87 IYTIISQDLSVVDDLIAKDTKGYFDIAIVYALKKYFSGQLEESSKELSKIKDKDNTRGIV 146
Y + V ++ DT ++ A+ Y +G + L+ + + + +
Sbjct: 112 TYLLSGGQSRVAKKILEIDTLPSEQRNLLEAVYAYITGHKTRAENLLATVDPQTLSALLG 171
Query: 147 PYLHLLIGRAMMPFSSQQAVHFFDYVRLTSPGTFLEEIALRNLLEITQ-NEVGERAFGYI 205
++ L+ + +A+ + D R+ +PGT +EE ALR + + +
Sbjct: 172 AHVALIKALLVAESDPAKAISYLDTARILAPGTLIEEAALRREIFLADSANKLSKFVFLS 231
Query: 206 RAYVTQFHHSIYKDHFISVLLRFFLHGQLKLPDED---IVFTISFFSLEEQRAIYLKIAQ 262
R Y+ +FH+S+Y D+F +H L E + I+ EQ IYL IA
Sbjct: 232 RQYIRRFHNSVYFDNFYKHFSAAIIHLGLADNVEQVAKLDDLIAEMKPGEQARIYLAIAY 291
Query: 263 NSVISGKRKIGFLAIKQLKRIIDRLDYKDLATIQLYENILNIPFVDIMSLQRSTCNIPYY 322
S+I+G+ + + + + +LY+ ++ + +
Sbjct: 292 KSLINGRLPVASFVLAKASALTRETSST-PDQYKLYQASVDFLAGHAEKGLNTISQLDES 350
Query: 323 SLMEQDRYLKKASEIIMSEIGK---SLIDIDFEHIQKDLLLDKKEPRHTNVSMGIESFIK 379
+L D L I I H Q D L + + S
Sbjct: 351 NLTALDISLAHTILEIGGAIQSLDHESHSAQHAHAQPDASLVDHDDIQDLGELATRSIEA 410
Query: 380 KNR 382
+R
Sbjct: 411 TDR 413
>gi|260466607|ref|ZP_05812795.1| hypothetical protein MesopDRAFT_5442 [Mesorhizobium opportunistum
WSM2075]
gi|259029613|gb|EEW30901.1| hypothetical protein MesopDRAFT_5442 [Mesorhizobium opportunistum
WSM2075]
Length = 455
Score = 312 bits (800), Expect = 5e-83, Method: Composition-based stats.
Identities = 72/324 (22%), Positives = 130/324 (40%), Gaps = 1/324 (0%)
Query: 26 LVRTIVPYQCVRSLQRALDEAMRGDISLQKKIPDIVKETGVQLRATHMDVFVDNRNIDAV 85
+ PYQ VRSLQ D GD + +++ T +LR F D +N A+
Sbjct: 26 AQDALQPYQLVRSLQLIQDRIAAGDHAAMPMQAKLLEMTDARLREADAQDFEDPKNFRAL 85
Query: 86 WIYTIISQDLSVVDDLIAKDTKGYFDIAIVYALKKYFSGQLEESSKELSKIKDKDNTRGI 145
+Y + + V+ +++ D+AI + Y +G+ ++ L I +
Sbjct: 86 LVYGMSGGNPVTVEAAVSRAAADPGDLAIAKGVIDYLNGRPGDAITALGPIDPMALPGDL 145
Query: 146 VPYLHLLIGRAMMPFSSQQAVHFFDYVRLTSPGTFLEEIALRNLLEITQN-EVGERAFGY 204
+L L+ G + A+ D +L SPGT +EE ALR + I R
Sbjct: 146 GAFLALVKGSLLAGDDPAAALKLLDEAKLLSPGTLVEEAALRRSVGIAVAQGDAARFALA 205
Query: 205 IRAYVTQFHHSIYKDHFISVLLRFFLHGQLKLPDEDIVFTISFFSLEEQRAIYLKIAQNS 264
YV ++ +S Y F + + + + + + S E ++ IYL+IA+ +
Sbjct: 206 STQYVERYLYSPYASQFADSFVSGVIALHMSISQDKLADITSMMDPEREKVIYLRIARRA 265
Query: 265 VISGKRKIGFLAIKQLKRIIDRLDYKDLATIQLYENILNIPFVDIMSLQRSTCNIPYYSL 324
I G ++ A + ++ D +D LY ++ + I ++ I L
Sbjct: 266 AIDGLNELSAFASTRAEQGRDGNTNQDDPRALLYSSLSTVTSDTIEDVRTKLGKIDRSKL 325
Query: 325 MEQDRYLKKASEIIMSEIGKSLID 348
+ DR L A++ I E+
Sbjct: 326 SDGDRDLLDAAQAIAGEVVAPPAS 349
>gi|158422248|ref|YP_001523540.1| chemotaxis protein MotC [Azorhizobium caulinodans ORS 571]
gi|158329137|dbj|BAF86622.1| hypothetical MotC chemotaxis protein [Azorhizobium caulinodans ORS
571]
Length = 872
Score = 309 bits (792), Expect = 4e-82, Method: Composition-based stats.
Identities = 62/353 (17%), Positives = 133/353 (37%), Gaps = 6/353 (1%)
Query: 25 DLVRTIVPYQCVRSLQRALDEAMRGDISLQKKIPDIVKETGVQLRATHMDVFVDNRNIDA 84
+ +PY+ VR LQR D GD + + ++ E V+ D RN A
Sbjct: 388 ERSTGPLPYEQVRRLQRLQDRIATGDTAALQAQRALIAEIEDAFHKADPKVWQDPRNARA 447
Query: 85 VWIYTIISQDLSVVDDLIAKDTKGYFDIAIVYALKKYFSGQLEESSKELSKIKDKDNTRG 144
++ + + +L++ D ++ Y G+ E++ + L+ I
Sbjct: 448 AVVFFLSGGSPKELRNLLSLKPAPAIDERLLQGALAYVEGRPEDAERYLANINPLQLPDA 507
Query: 145 IVPYLHLLIGRAMMPFSSQQAVHFFDYVRLTSPGTFLEEIALRNLLEITQN-EVGERAFG 203
+ + ++ + ++A+ D RL PGT +EE ALR + + +
Sbjct: 508 LGGQIAMVQAAVTVGKDPRKAMAQLDIARLVMPGTLVEEAALRREILVAAQLGELNKFEH 567
Query: 204 YIRAYVTQFHHSIYKDHFISVLLRFFLHGQ---LKLPDEDIVFTISFFSLEEQRAIYLKI 260
+ Y+ +F HS+Y +F + + +V + + + IYL +
Sbjct: 568 LSKQYLYRFRHSVYAGNFRQRFAAALTRMAFVNDRDQFQRLVSLLQPLDRDSRVDIYLMV 627
Query: 261 AQNSVISGKRKIGFLAIKQLKRIIDRLDYKDLATIQLYENILNIP-FVDIMSLQRSTCNI 319
A+ ++ GK LA +++ D + D ++Y+ +N ++ + +I
Sbjct: 628 ARGALNQGKFTAASLASERVLVDADPV-STDAERARVYKAAVNAASSKEVDAAVVELKSI 686
Query: 320 PYYSLMEQDRYLKKASEIIMSEIGKSLIDIDFEHIQKDLLLDKKEPRHTNVSM 372
L D L A+ + + + ++ + +D + HT +
Sbjct: 687 IRSRLPPDDVMLLNAALTTAELVRSAGETVKQAAVKPQVKVDPMQVTHTAGTA 739
>gi|319781669|ref|YP_004141145.1| hypothetical protein Mesci_1942 [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317167557|gb|ADV11095.1| hypothetical protein Mesci_1942 [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 460
Score = 306 bits (783), Expect = 5e-81, Method: Composition-based stats.
Identities = 77/363 (21%), Positives = 140/363 (38%), Gaps = 1/363 (0%)
Query: 26 LVRTIVPYQCVRSLQRALDEAMRGDISLQKKIPDIVKETGVQLRATHMDVFVDNRNIDAV 85
+ PYQ VRSLQ D GD + +++ T +LRA + + + D +N A+
Sbjct: 26 AQEALQPYQLVRSLQLIQDRIAAGDHAALPMQAKLLEMTDARLRAANAEDYKDPKNFRAL 85
Query: 86 WIYTIISQDLSVVDDLIAKDTKGYFDIAIVYALKKYFSGQLEESSKELSKIKDKDNTRGI 145
+Y + + V+ ++ T +AI + +Y +G+ ++ + L I +
Sbjct: 86 LVYGMSGGNPVTVEAATSRATADPQSLAIAKGVIEYLNGRPGKAIEALRPIDPMALPPDL 145
Query: 146 VPYLHLLIGRAMMPFSSQQAVHFFDYVRLTSPGTFLEEIALRNLLEITQN-EVGERAFGY 204
+L L+ G + A+ D RL SPGT +EE ALR + + R
Sbjct: 146 GAFLALVKGSLLAGDQPATALGLLDEARLLSPGTLVEEAALRRSVGLAVAQGDAARFALA 205
Query: 205 IRAYVTQFHHSIYKDHFISVLLRFFLHGQLKLPDEDIVFTISFFSLEEQRAIYLKIAQNS 264
YV ++ +S Y F + + + + + + S E ++ IYL+IA+ +
Sbjct: 206 STQYVERYLYSPYASQFADSFVSGVIALHMSISQDKLGDITSMMDPEREKVIYLRIARRA 265
Query: 265 VISGKRKIGFLAIKQLKRIIDRLDYKDLATIQLYENILNIPFVDIMSLQRSTCNIPYYSL 324
I G + A + ++ D +D LY ++ + I ++ I L
Sbjct: 266 AIDGLNDLSAFASARAEQGRDGNTNQDDPRALLYASLSTVTSGTIEDIRAKLGKIDRSRL 325
Query: 325 MEQDRYLKKASEIIMSEIGKSLIDIDFEHIQKDLLLDKKEPRHTNVSMGIESFIKKNRSQ 384
E DR L A++ I E+ + E P +S +
Sbjct: 326 SEGDRALLDAAQAIAGEVVAPPTALPAEKPAPVAAEQPPAPEIATPQNADDSSLPPVEGA 385
Query: 385 IES 387
I
Sbjct: 386 ISE 388
>gi|90422621|ref|YP_530991.1| chemotaxis protein [Rhodopseudomonas palustris BisB18]
gi|90104635|gb|ABD86672.1| putative chemotaxis protein precursor [Rhodopseudomonas palustris
BisB18]
Length = 396
Score = 305 bits (782), Expect = 6e-81, Method: Composition-based stats.
Identities = 79/369 (21%), Positives = 149/369 (40%), Gaps = 9/369 (2%)
Query: 32 PYQCVRSLQRALDEAMRGDISLQKKIPDIVKETGVQLRATHMDVFVDNRNIDAVWIYTII 91
PYQ VRSLQ D+ RG++ ++K+ G Q + +++ D+RN A + +
Sbjct: 30 PYQLVRSLQSLQDDIARGNLDAHNAQRGLLKQLGEQFQQADPNLWKDSRNARAAVTFLLS 89
Query: 92 SQDLSVVDDLIAKDTKGYFDIAIVYALKKYFSGQLEESSKELSKIKDKDNTRGIVPYLHL 151
D VV L ++D D AI+ Y G+ +E+ + L ++ + + + L
Sbjct: 90 GGDPQVVHALRSRDLL-SLDAAILDGAMAYIEGRPDEARERLGGVRARSLPAALGAEIAL 148
Query: 152 LIGRAMMPFSSQQAVHFFDYVRLTSPGTFLEEIALRNLLEIT-QNEVGERAFGYIRAYVT 210
+ + + ++ D VRL PGT +EE ALR + + Q + ++ Y
Sbjct: 149 VQSALLAKSDVKASIDRLDEVRLLMPGTLVEEAALRREIFLVGQADDFDKFEFLATRYFR 208
Query: 211 QFHHSIYKDHFISVLLRFFLHGQLK---LPDEDIVFTISFFSLEEQRAIYLKIAQNSVIS 267
++ HSIY +F +V + QRA+YL IA+ +++
Sbjct: 209 RYRHSIYAGNFRQRFALSVARFSFAQQTARFPRLVGVLDHLDGASQRALYLLIARTALVR 268
Query: 268 GKRKIGFLAIKQLKRIIDRLDYKDLATIQLYENILNIPFVDIMSLQRSTCNIPYYSLMEQ 327
GK ++ LA +++ + + D +LY + I L EQ
Sbjct: 269 GKTEMTVLAAERVLALTEDEDSPARGRAELYRAAARLVTSGHAQALEDLQQIDAGRLPEQ 328
Query: 328 DRYLKKASEIIMSEIGKSLIDIDFE-HIQKDLLLDKKEPRHTNVSMGIESFIKKNRSQIE 386
D L A+ + + K+L + + + + + + S+G I + + ++
Sbjct: 329 DAELLAAALKLGRTVRKALPTVSAKVDVDDGVPTAMRPRIDFSASLGA---INRAQQLLD 385
Query: 387 SIDVLLAEA 395
L E
Sbjct: 386 ESGAQLKER 394
>gi|217976236|ref|YP_002360383.1| chemotaxis protein [Methylocella silvestris BL2]
gi|217501612|gb|ACK49021.1| chemotaxis protein [Methylocella silvestris BL2]
Length = 403
Score = 303 bits (776), Expect = 3e-80, Method: Composition-based stats.
Identities = 77/391 (19%), Positives = 142/391 (36%), Gaps = 15/391 (3%)
Query: 16 VFFSFATDQDLVR------TIVPYQCVRSLQRALDEAMRGDISLQKKIPDIVKETGVQLR 69
+F FA QD + P++ VR++ D + GD + + K+P ++ + +L
Sbjct: 15 LFQGFAVAQDGHSAAPQGGDVRPFELVRTVAALQDRIVMGDAAAKAKLPLLISQISDRLF 74
Query: 70 ATHMDVFVDNRNIDAVWIYTIISQDLSVVDDLIAKDTKGYFDIAIVYALKKYFSGQLEES 129
A V+ + RN A+ YT+ V+ ++ + + ++ Y GQ ++
Sbjct: 75 ACGAAVWAEARNDHAIVAYTLSGGQPRVIRKVLQTGAVPHAEADLMAGALAYAEGQEAKA 134
Query: 130 SKELSKIKDKDNTRGIVPYLHLLIGRAMMPFSSQQAVHFFDYVRLTSPGTFLEEIALRNL 189
+ L I+ + + L + ++A D R+ +PGT +EE ALR
Sbjct: 135 KQILLPIEATKLPPSVGGLVALAQAALLSKIDPRRAARLLDEARILAPGTLVEEAALRRS 194
Query: 190 LEITQN-EVGERAFGYIRAYVTQFHHSIYKDHFISVLLRFFLHG---QLKLPDEDIVFTI 245
+ +R Y ++ S+Y + F + P + +
Sbjct: 195 ALLADEVADFDRFINASSQYFRRYSKSLYANDFRRRFAESIVRFGLKDEPGPSARLTGLL 254
Query: 246 SFFSLEEQRAIYLKIAQNSVISGKRKIGFLAIKQLKRIIDRLDYKDLATIQLYENILNIP 305
S Q +YL IAQ V +GK A ++ + + QLY I +
Sbjct: 255 SELDRPYQAELYLIIAQAGVRNGKIGPAKAAAEKALSLS-EQGGAARSRAQLYAAIAKVL 313
Query: 306 FVDIMSLQRSTCNIPYYSLMEQDRYLKKASEIIMSEIGKSLIDIDFEHIQKDLLLDKKEP 365
V I L DR LK A + ++I +S D Q +D+
Sbjct: 314 IVSPAEGLTELAQIDDAVLPRGDRDLKSAVAQLATQIQRS---ADGGQAQDASSIDRAPG 370
Query: 366 RHTNV-SMGIESFIKKNRSQIESIDVLLAEA 395
I+ ++ ++ D LL +
Sbjct: 371 SGGESHDANGSMLIQSAQAALQQTDALLRRS 401
>gi|161511088|ref|NP_773501.2| chemotaxis protein [Bradyrhizobium japonicum USDA 110]
Length = 397
Score = 302 bits (773), Expect = 6e-80, Method: Composition-based stats.
Identities = 68/370 (18%), Positives = 137/370 (37%), Gaps = 12/370 (3%)
Query: 31 VPYQCVRSLQRALDEAMRGDISLQKKIPDIVKETGVQLRATHMDVFVDNRNIDAVWIYTI 90
PY+ VR+LQ D GD + ++++ G + A V+ + +N AV IY +
Sbjct: 35 EPYELVRALQAVQDGIANGDTAAHGSHIALIRQIGEKFLAADASVWSNAQNGQAVVIYLL 94
Query: 91 ISQDLSVVDDLIAKDTKGYFDIAIVYALKKYFSGQLEESSKELSKIKDKDNTRGIVPYLH 150
+V L D + Y G+ +E+ + L +K + G+ +
Sbjct: 95 SGGAPQLVRKLPRDKM--NVDARLFDGALAYVEGRQDEARELLKDVKPRTIPSGLGGQVA 152
Query: 151 LLIGRAMMPFSSQQAVHFFDYVRLTSPGTFLEEIALRNLLEIT-QNEVGERAFGYIRAYV 209
L+ G + A+ D RL PGT +EE ALR + + Q E ++ AY+
Sbjct: 153 LVQGALFARTEASLAIERLDDARLLLPGTLVEEAALRREILLVGQAEDFDKFEFLTLAYI 212
Query: 210 TQFHHSIYKDHFISVLLRFFLHGQLKLPDEDIVFTISFF---SLEEQRAIYLKIAQNSVI 266
+ +SIY F L L + ++ + +YL IA+++++
Sbjct: 213 RHYRNSIYAGDFWQRFSTGLTQSSLALDERRFARIVTMLEQIDRGSRLKLYLVIARSAMV 272
Query: 267 SGKRKIGFLAIKQLKRIIDRLDYKDLATIQLYENILNIPFVDIMSLQRSTCNIPYYSLME 326
G+ + LA ++ + + + + + + L E
Sbjct: 273 RGRMAVTRLAGERALTLSADA-SAERERAHFFRGASRVLTDEYDGGLAELKALDRSKLPE 331
Query: 327 QDRYLKKASEIIMSEIGKSLIDIDFEHIQKDLLLDKKEPRHTNVSMGIESFIKKNRSQIE 386
+D L A+ + ++ K K P +++ + + R ++
Sbjct: 332 RDLPLLNATVQLALDVRKPFASGSAATADK----PPATPARLDLASSTATL-ARARKELG 386
Query: 387 SIDVLLAEAR 396
+++L + R
Sbjct: 387 ELELLTRDRR 396
>gi|27355142|dbj|BAC52126.1| motC [Bradyrhizobium japonicum USDA 110]
Length = 386
Score = 301 bits (772), Expect = 1e-79, Method: Composition-based stats.
Identities = 68/370 (18%), Positives = 137/370 (37%), Gaps = 12/370 (3%)
Query: 31 VPYQCVRSLQRALDEAMRGDISLQKKIPDIVKETGVQLRATHMDVFVDNRNIDAVWIYTI 90
PY+ VR+LQ D GD + ++++ G + A V+ + +N AV IY +
Sbjct: 24 EPYELVRALQAVQDGIANGDTAAHGSHIALIRQIGEKFLAADASVWSNAQNGQAVVIYLL 83
Query: 91 ISQDLSVVDDLIAKDTKGYFDIAIVYALKKYFSGQLEESSKELSKIKDKDNTRGIVPYLH 150
+V L D + Y G+ +E+ + L +K + G+ +
Sbjct: 84 SGGAPQLVRKLPRDKM--NVDARLFDGALAYVEGRQDEARELLKDVKPRTIPSGLGGQVA 141
Query: 151 LLIGRAMMPFSSQQAVHFFDYVRLTSPGTFLEEIALRNLLEIT-QNEVGERAFGYIRAYV 209
L+ G + A+ D RL PGT +EE ALR + + Q E ++ AY+
Sbjct: 142 LVQGALFARTEASLAIERLDDARLLLPGTLVEEAALRREILLVGQAEDFDKFEFLTLAYI 201
Query: 210 TQFHHSIYKDHFISVLLRFFLHGQLKLPDEDIVFTISFF---SLEEQRAIYLKIAQNSVI 266
+ +SIY F L L + ++ + +YL IA+++++
Sbjct: 202 RHYRNSIYAGDFWQRFSTGLTQSSLALDERRFARIVTMLEQIDRGSRLKLYLVIARSAMV 261
Query: 267 SGKRKIGFLAIKQLKRIIDRLDYKDLATIQLYENILNIPFVDIMSLQRSTCNIPYYSLME 326
G+ + LA ++ + + + + + + L E
Sbjct: 262 RGRMAVTRLAGERALTLSADA-SAERERAHFFRGASRVLTDEYDGGLAELKALDRSKLPE 320
Query: 327 QDRYLKKASEIIMSEIGKSLIDIDFEHIQKDLLLDKKEPRHTNVSMGIESFIKKNRSQIE 386
+D L A+ + ++ K K P +++ + + R ++
Sbjct: 321 RDLPLLNATVQLALDVRKPFASGSAATADK----PPATPARLDLASSTATL-ARARKELG 375
Query: 387 SIDVLLAEAR 396
+++L + R
Sbjct: 376 ELELLTRDRR 385
>gi|319409173|emb|CBI82817.1| putative flagellar motor protein [Bartonella schoenbuchensis R1]
Length = 463
Score = 300 bits (768), Expect = 3e-79, Method: Composition-based stats.
Identities = 83/395 (21%), Positives = 158/395 (40%), Gaps = 34/395 (8%)
Query: 32 PYQCVRSLQRALDEAMRGDISLQKKIPDIVKETGVQLRATHMDVFVDNRNIDAVWIYTII 91
P Q VRSLQ D+ + G + +K P +++E G + + + ++ D +N+ A+ IY
Sbjct: 69 PMQLVRSLQNLQDQIVSGQEEVLQKQPQLLREIGEKFLSFNPSIWKDKQNLYALLIYLFN 128
Query: 92 SQDLSVVDDLIAKDTKGYFDIAIVYALKKYFSGQLEESSKELSKI---KDKDNTRGIVPY 148
+ SVV ++ +G I+ + Y S + E K + + + +
Sbjct: 129 GGNPSVVRVILKSYGQGVIAENIMTGVLAYLSHKQEVFFKTFANLTDEDIQSIPPALFFS 188
Query: 149 LHLLIGRAMMPFSSQQAVHFFDYVRLTSPGTFLEEIALRNLLEITQN-EVGERAFGYIRA 207
+ L + A+ D VRL SPGT EE A+R +++ + +R
Sbjct: 189 IVLSTVGNTIMKDPVLAMKQLDQVRLLSPGTLFEESAIRREIKVATILGQTDLLTLLVRN 248
Query: 208 YVTQFHHSIYKDHFISVLLRFFLHGQLKLPDEDIVFTISFFSLEEQRAIYLKIAQNSVIS 267
Y ++F S Y F KL D+ + IS+ Q Y+ +++ ++I+
Sbjct: 249 YASRFGKSPYAKDFWREFGIAIPRIDEKLDDQQLEALISYAPPMVQLMAYMDVSRTALIN 308
Query: 268 GKRKIGFLAIKQLKRIIDRLDYKDLATIQLYENILNIPFVDIMSLQRSTCNIPYYSLMEQ 327
+ + L+ ++ + L+ D +LY V ++ NI L E+
Sbjct: 309 ARMERAQLSAQKALTLAHELNVNDAP-ARLYYAASLASSVTAHEAEQLLQNISSKDLSEK 367
Query: 328 DRYLKKASEIIMSEIGKSLIDI-------DFEHIQKDLLLD------------------- 361
DR L A++ + ++ SL+D D Q LD
Sbjct: 368 DRLLFIAAQAVAQKVTSSLVDGQKEVKTQDSTQPQSQKELDTMSKETVSKEVEVVSKEAK 427
Query: 362 ---KKEPRHTNVSMGIESFIKKNRSQIESIDVLLA 393
+++ ++ S I I++ + +I+ +D LL
Sbjct: 428 EAVEQQNAPSSTSTEINQLIEQAQEKIDEVDKLLG 462
>gi|328545494|ref|YP_004305603.1| chemotaxis protein [polymorphum gilvum SL003B-26A1]
gi|326415235|gb|ADZ72298.1| Probable chemotaxis protein [Polymorphum gilvum SL003B-26A1]
Length = 400
Score = 296 bits (759), Expect = 3e-78, Method: Composition-based stats.
Identities = 66/368 (17%), Positives = 134/368 (36%), Gaps = 8/368 (2%)
Query: 32 PYQCVRSLQRALDEAMRGDISLQKKIPDIVKETGVQLRATHMDVFVDNRNIDAVWIYTII 91
PY+ VR+LQ E +G+ ++ + + + D RN A I+ +
Sbjct: 32 PYRMVRTLQALQGEVAQGNSHAHTAQRALLLQMDEVFATAPAETWSDPRNARAAVIHLLS 91
Query: 92 SQDLSVVDDLIAKDTKGYFDIAIVYALKKYFSGQLEESSKELSKIKDKDNTRGIVPYLHL 151
V+ L+ D + D A++ Y G+ EE+ L+ I D + + L
Sbjct: 92 GGHPRVMRQLLDLDPQPDLDPALMRGALAYVEGRQEEARDLLTAIDPMDLPPNLGGQVAL 151
Query: 152 LIGRAMMPFSSQQAVHFFDYVRLTSPGTFLEEIALRNLLEITQN-EVGERAFGYIRAYVT 210
+ + + A+ RL PGT +EE ALR + + ER Y+
Sbjct: 152 VRAALAVGDDPEAAMKMLGVARLLMPGTLVEEAALRREVFVAGKIGDIERFQSLSIRYLR 211
Query: 211 QFHHSIYKDHFISVLLRFFLH---GQLKLPDEDIVFTISFFSLEEQRAIYLKIAQNSVIS 267
+F SIY+ F G+ + ++ F + +R +YL++A+ +++
Sbjct: 212 RFRGSIYEGDFRRRFALALETLGFGENDAKFALLESLLAEFDSDSRRMLYLRLARQALVG 271
Query: 268 GKRKIGFLAIKQLKRIIDRLDYKDLATIQLYENILNIPFVDIMSLQRSTCNIPYYSLMEQ 327
G +I A ++ + + +++Y + DI + +I L +
Sbjct: 272 GHLEIVRKATERALPLAMAGTSEHR-LLRIYRAGALLDPRDIGEARDLLWSIDRGELTPE 330
Query: 328 DRYLKKASEIIMSEIGKSLIDIDFEHIQKDLLLDKKEPRHTNVSMGIESFIKKNRSQIES 387
+R L A +++ + + D P+ + + +
Sbjct: 331 ERELMDAVYAVLNRVRHWPEPPPGTIGEFGAFADIGAPKAPD---WHRPTMAAADRILTE 387
Query: 388 IDVLLAEA 395
LL ++
Sbjct: 388 TGALLQQS 395
>gi|118589970|ref|ZP_01547374.1| probable chemotaxis protein precursor [Stappia aggregata IAM 12614]
gi|118437467|gb|EAV44104.1| probable chemotaxis protein precursor [Stappia aggregata IAM 12614]
Length = 411
Score = 295 bits (756), Expect = 7e-78, Method: Composition-based stats.
Identities = 57/349 (16%), Positives = 129/349 (36%), Gaps = 6/349 (1%)
Query: 6 LICTMMVAMDVFFSFAT-DQDLVRTIVPYQCVRSLQRALDEAMRGDISLQKKIPDIVKET 64
LI + V +A PY+ +RSLQ ++ +G+ + ++ +
Sbjct: 15 LIALVAAVASVSAGWAQQVGKETSVPQPYEMIRSLQSLQEQISQGNTHALQAQRALLTKM 74
Query: 65 GVQLRATHMDVFVDNRNIDAVWIYTIISQDLSVVDDLIAKDTKGYFDIAIVYALKKYFSG 124
+V+ + RN A ++ + V+ L++ D D ++ A Y G
Sbjct: 75 DAHFVVLQAEVWQEPRNARAAVVHLLSGGHPDVMRYLLSLDPAPAVDRKLMEASLAYVEG 134
Query: 125 QLEESSKELSKIKDKDNTRGIVPYLHLLIGRAMMPFSSQQAVHFFDYVRLTSPGTFLEEI 184
+ EE L+ I + + ++ L+ + ++A+ L PGT +EE
Sbjct: 135 REEEMQVLLADIDPLELPASLGGHVALVKAAPYIRTDPEKAMELLQVASLLMPGTLVEEA 194
Query: 185 ALRNLLEIT-QNEVGERAFGYIRAYVTQFHHSIYKDHFISVLLRFFLHGQL---KLPDED 240
ALR + + +R Y+ +F S+Y F +
Sbjct: 195 ALRREVFLAGMTANVDRFRVLSIRYLRRFRASVYSGDFRRRFALSLDTLGFVKSEDKFAL 254
Query: 241 IVFTISFFSLEEQRAIYLKIAQNSVISGKRKIGFLAIKQLKRIIDRLDYKDLATIQLYEN 300
+ + F + +R +YL++A++++++G + A + + K+ +++Y
Sbjct: 255 LDDVLHEFDADSRRGLYLRLARSALLAGHLNVARKATGEALTLTVE-GTKENEILKIYLA 313
Query: 301 ILNIPFVDIMSLQRSTCNIPYYSLMEQDRYLKKASEIIMSEIGKSLIDI 349
+ I + + +I L QD + ++++ +
Sbjct: 314 ATRLDPEFITANRDLLWSIDKSILTAQDLAMLDGVYVVLNSVRHFPEPP 362
>gi|319406990|emb|CBI80627.1| putative flagellar motor protein [Bartonella sp. 1-1C]
Length = 448
Score = 293 bits (750), Expect = 4e-77, Method: Composition-based stats.
Identities = 79/381 (20%), Positives = 152/381 (39%), Gaps = 19/381 (4%)
Query: 31 VPYQCVRSLQRALDEAMRGDISLQKKIPDIVKETGVQLRATHMDVFVDNRNIDAVWIYTI 90
P VRSLQ D+ + G +K ++ E G + V+ D N+ A+ IY
Sbjct: 62 EPVHLVRSLQNLQDKIISGQEEELQKQLQLLGEIGDKFLTFDASVWKDKNNLYALLIYLF 121
Query: 91 ISQDLSVVDDLIAKDTKGYFDIAIVYALKKYFSGQLEESSKE---LSKIKDKDNTRGIVP 147
+ VV ++ K KG ++ Y S + K L++ + +
Sbjct: 122 NGGNPRVVQSILEKYGKGVISENVMDGALAYASHKKTTFLKTYTQLTEEDIRSIPPALFA 181
Query: 148 YLHLLIGRAMMPFSSQQAVHFFDYVRLTSPGTFLEEIALRNLLEIT-QNEVGERAFGYIR 206
+ L ++ A+ D VRL +PGT EE A+R L++ + IR
Sbjct: 182 SVVLSTVVNIIEKDPALALKQLDQVRLFAPGTLFEEGAIRRELKVASMLGEIDLLALLIR 241
Query: 207 AYVTQFHHSIYKDHFISVLLRFFLHGQLKLPDEDIVFTISFFSLEEQRAIYLKIAQNSVI 266
YV +F S Y F + L KL + + +++ + Q Y+ +++ ++I
Sbjct: 242 HYVHRFWKSPYAYDFWHEFIPAVLRLDEKLSIDQLEALLAYAPTKVQFMAYMAVSRAALI 301
Query: 267 SGKRKIGFLAIKQLKRIIDRLDYKDLATIQLYENILNIPFVDIMSLQRSTCNIPYYSLME 326
+ + L+ ++ + + D +++LY + + + NI Y L E
Sbjct: 302 DARMEKAKLSAQKALTLAHEIGV-DDTSVRLYYAMSLAGSIAAQEALQMIQNIIYKDLSE 360
Query: 327 QDRYLKKASEIIMSEIGKSLID---------IDFEHIQKDLLL-----DKKEPRHTNVSM 372
+DR+L A++ + + +D + ++L L DK+ + +
Sbjct: 361 KDRFLFIAAQAVAQRVISFPLDVLKKKNTQIVSQPQSHEELKLTLEKDDKQNNTTSLIEA 420
Query: 373 GIESFIKKNRSQIESIDVLLA 393
++ FI+ + +I ID LL
Sbjct: 421 EMKQFIQHTQEKINEIDQLLG 441
>gi|319403974|emb|CBI77562.1| putative flagellar motor protein [Bartonella rochalimae ATCC
BAA-1498]
Length = 446
Score = 290 bits (741), Expect = 4e-76, Method: Composition-based stats.
Identities = 80/381 (20%), Positives = 152/381 (39%), Gaps = 19/381 (4%)
Query: 31 VPYQCVRSLQRALDEAMRGDISLQKKIPDIVKETGVQLRATHMDVFVDNRNIDAVWIYTI 90
P VRSLQ D+ + G +K ++ E G + V+ D N+ A+ IY
Sbjct: 60 EPVHLVRSLQNLQDKIISGQEEELQKQLQLLGEIGDKFLTFDASVWKDKNNLYALLIYLF 119
Query: 91 ISQDLSVVDDLIAKDTKGYFDIAIVYALKKYFSGQLEESSKE---LSKIKDKDNTRGIVP 147
+ VV ++ K KG ++ Y S + K L++ + +
Sbjct: 120 NGGNPRVVQSILEKYGKGVISENVMDGALAYASHKKTTFLKTYTQLTEEDIRSIPPALFA 179
Query: 148 YLHLLIGRAMMPFSSQQAVHFFDYVRLTSPGTFLEEIALRNLLEIT-QNEVGERAFGYIR 206
+ L ++ A+ D VRL +PGT EE A+R L++ + IR
Sbjct: 180 SVVLSTVVNIIEKDPALALKQLDQVRLFAPGTLFEEGAIRRELKVASMLGEIDLLALLIR 239
Query: 207 AYVTQFHHSIYKDHFISVLLRFFLHGQLKLPDEDIVFTISFFSLEEQRAIYLKIAQNSVI 266
YV +F S Y F + L KL + + +++ + Q Y+ +++ ++I
Sbjct: 240 HYVHRFWKSPYAYDFWHEFIPAVLRLDEKLSIDQLEALLAYAPTKVQFMAYMAVSRAALI 299
Query: 267 SGKRKIGFLAIKQLKRIIDRLDYKDLATIQLYENILNIPFVDIMSLQRSTCNIPYYSLME 326
+ + L+ ++ + + D +++LY + + + NI Y L E
Sbjct: 300 DARMEKAKLSAQKALTLAHEIGV-DDTSVRLYYAMSLSGSIAAQEALQMIQNIIYKDLSE 358
Query: 327 QDRYLKKASEIIMSEIGKSLID---------IDFEHIQKDLLL-----DKKEPRHTNVSM 372
+DR+L A++ + + +D K+L L DK++ + +
Sbjct: 359 KDRFLFIAAQAVAQRVVSFPLDVLKEKNTQIASQPQSHKELKLTLEKDDKQKNTASLIEA 418
Query: 373 GIESFIKKNRSQIESIDVLLA 393
++ FI+ + +I ID LL
Sbjct: 419 EMKQFIQHTQEKINEIDQLLG 439
>gi|254502667|ref|ZP_05114818.1| hypothetical protein SADFL11_2706 [Labrenzia alexandrii DFL-11]
gi|222438738|gb|EEE45417.1| hypothetical protein SADFL11_2706 [Labrenzia alexandrii DFL-11]
Length = 399
Score = 288 bits (738), Expect = 8e-76, Method: Composition-based stats.
Identities = 56/340 (16%), Positives = 127/340 (37%), Gaps = 5/340 (1%)
Query: 15 DVFFSFATDQDLVRTIVPYQCVRSLQRALDEAMRGDISLQKKIPDIVKETGVQLRATHMD 74
V F T P++ VR+LQ A ++ G+ S ++ + ++
Sbjct: 14 AVVFFADQAMANQATKEPFEMVRALQSAQEQVASGNDSAAAMQRALLAKMDEIFLQLPLE 73
Query: 75 VFVDNRNIDAVWIYTIISQDLSVVDDLIAKDTKGYFDIAIVYALKKYFSGQLEESSKELS 134
+ D RN A I+ + + VV L+ D+ ++ A Y G+ E+ L+
Sbjct: 74 AWQDPRNARASVIHLLSGGNPEVVRHLLTLTPAPVIDLNLMEASLAYVEGREEDMLTRLA 133
Query: 135 KIKDKDNTRGIVPYLHLLIGRAMMPFSSQQAVHFFDYVRLTSPGTFLEEIALRNLLEIT- 193
+ + ++ L+ + +A+ L PGT +EE ALR + +
Sbjct: 134 DVDPLTLPPSLGGHIALVKAVPYIQTDPVRAMELLQIASLLMPGTLVEEAALRREVLVAG 193
Query: 194 QNEVGERAFGYIRAYVTQFHHSIYKDHFISVLLRFFLHG---QLKLPDEDIVFTISFFSL 250
ER Y+ ++ S+Y F + + + + + F
Sbjct: 194 LVGDIERFRTLSIRYLRRYRASVYSGDFRRRFAIALDTLGFVEDQDKFDLLYGVLEEFED 253
Query: 251 EEQRAIYLKIAQNSVISGKRKIGFLAIKQLKRIIDRLDYKDLATIQLYENILNIPFVDIM 310
+ +R +Y+++A+++++ G +I A Q + + + +++Y+ + +
Sbjct: 254 DSRRGLYMRLARSALLGGNLQIASKATDQAQMLA-VAGTAEYELLKIYQVATRLNREAVK 312
Query: 311 SLQRSTCNIPYYSLMEQDRYLKKASEIIMSEIGKSLIDID 350
+ ++ +L +D A +++ I D
Sbjct: 313 PNRDLLWSVNKAALTPEDLDFLYAVNTVLNSIRHFPDPPD 352
>gi|319405417|emb|CBI79036.1| putative flagellar motor protein [Bartonella sp. AR 15-3]
Length = 434
Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats.
Identities = 77/381 (20%), Positives = 150/381 (39%), Gaps = 19/381 (4%)
Query: 31 VPYQCVRSLQRALDEAMRGDISLQKKIPDIVKETGVQLRATHMDVFVDNRNIDAVWIYTI 90
P VRSLQ D+ + G +K +++E G + ++ D N+ A+ IY
Sbjct: 48 EPVHLVRSLQNLQDKIISGQEKELQKQLQLLEEIGDKFLTFDSSIWKDKNNLYALLIYLF 107
Query: 91 ISQDLSVVDDLIAKDTKGYFDIAIVYALKKYFSGQL---EESSKELSKIKDKDNTRGIVP 147
+ VV ++ K KG I+ Y S + ++ +L+ + +
Sbjct: 108 NGGNPRVVQSILEKYGKGVIPQNIIDDALAYVSHKKNAFLKAYTQLTVKDVQSIPPALFA 167
Query: 148 YLHLLIGRAMMPFSSQQAVHFFDYVRLTSPGTFLEEIALRNLLEITQN-EVGERAFGYIR 206
+ L ++ A++ D VRL +PGT EE A+R L++ + IR
Sbjct: 168 SIVLSTVVNIIEKDPVLALNTLDQVRLFAPGTLFEEGAIRRELKVASILGEIDLMALLIR 227
Query: 207 AYVTQFHHSIYKDHFISVLLRFFLHGQLKLPDEDIVFTISFFSLEEQRAIYLKIAQNSVI 266
YV +F S Y F + L KL E + + + + + Y+ +++ ++I
Sbjct: 228 HYVHRFWKSPYACDFWYEFIPAILRVDEKLSIEQLETLLVYAPTKVRFMTYMAVSRAALI 287
Query: 267 SGKRKIGFLAIKQLKRIIDRLDYKDLATIQLYENILNIPFVDIMSLQRSTCNIPYYSLME 326
+ + ++ ++ + + D + LY + + + NI Y L E
Sbjct: 288 DARMEKAQISAQKALTLAREIGV-DDTSAHLYYAMSLAGSIAAEEALQMIQNIVYKDLSE 346
Query: 327 QDRYLKKASEIIMSEIGKSLIDI-----DFEHIQKD---------LLLDKKEPRHTNVSM 372
+DR+L A++ + + + I + +Q K++ + +
Sbjct: 347 KDRFLFIAAQAVAQRVVSFPLGILEKKKEKLALQPQSYEELKLTLEKDAKQQNTISPIET 406
Query: 373 GIESFIKKNRSQIESIDVLLA 393
I+ FI+ R +I ID LL
Sbjct: 407 EIKEFIQHTREKINEIDQLLG 427
>gi|218675466|ref|ZP_03525135.1| chemotaxis protein [Rhizobium etli GR56]
Length = 239
Score = 279 bits (715), Expect = 3e-73, Method: Composition-based stats.
Identities = 66/239 (27%), Positives = 118/239 (49%), Gaps = 1/239 (0%)
Query: 56 KIPDIVKETGVQLRATHMDVFVDNRNIDAVWIYTIISQDLSVVDDLIAKDTKGYFDIAIV 115
++ +LR ++ D+RN+DA IY + + ++ LIA D GYFD +
Sbjct: 1 MQRFMLGTIDERLRTADTSIYDDDRNVDAALIYAMSGGNPQTLEYLIAHDVNGYFDNRVT 60
Query: 116 YALKKYFSGQLEESSKELSKIKDKDNTRGIVPYLHLLIGRAMMPFSSQQAVHFFDYVRLT 175
L+KY +G+ +K L + + + I PYL L+ G ++ A+ +D RL
Sbjct: 61 DVLRKYLTGKGLLVAKTLEETAREYRDKKIGPYLALIGGNVLIATKPTDALDLYDQARLA 120
Query: 176 SPGTFLEEIALRNLLEITQN-EVGERAFGYIRAYVTQFHHSIYKDHFISVLLRFFLHGQL 234
+PGT LEE ALR + I + + ++ Y + Y +F HS Y F + ++ +
Sbjct: 121 APGTILEEAALRRSVAICVDKGMLDKGLAYSQRYARRFLHSPYASQFADLFVKLVVAHDR 180
Query: 235 KLPDEDIVFTISFFSLEEQRAIYLKIAQNSVISGKRKIGFLAIKQLKRIIDRLDYKDLA 293
+ +D+V +SF QR +YL+IA+ + ISGK ++ +A+ +++ + D
Sbjct: 181 DVKPQDVVDILSFMDAPRQREVYLRIARAAAISGKPELARMAVDRVQALGAGTDNAFGP 239
>gi|319898652|ref|YP_004158745.1| flagellar motor protein [Bartonella clarridgeiae 73]
gi|319402616|emb|CBI76161.1| putative flagellar motor protein [Bartonella clarridgeiae 73]
Length = 428
Score = 278 bits (711), Expect = 1e-72, Method: Composition-based stats.
Identities = 80/383 (20%), Positives = 155/383 (40%), Gaps = 21/383 (5%)
Query: 31 VPYQCVRSLQRALDEAMRGDISLQKKIPDIVKETGVQLRATHMDVFVDNRNIDAVWIYTI 90
P Q VRSLQ D+ + G + ++ +++E G + DV+ D+ N+ A+ IY
Sbjct: 40 EPIQFVRSLQNLQDKIISGQEEVLQEQLQLLEEIGDKFLTFDSDVWKDDNNLYALLIYLF 99
Query: 91 ISQDLSVVDDLIAKDTKGYFDIAIVYALKKYFSGQLE---ESSKELSKIKDKDNTRGIVP 147
+ VV ++ K KG I+ Y S + ++ +L++ + +
Sbjct: 100 NGGNPRVVQIILEKYGKGVISQNIMDCALAYASHKRAAFVKAYTQLTEEDVRSIPPALFA 159
Query: 148 YLHLLIGRAMMPFSSQQAVHFFDYVRLTSPGTFLEEIALRNLLEITQN-EVGERAFGYIR 206
+ L ++ A+ D +RL +PGT EE A+R L++ + +R
Sbjct: 160 SVVLSTVVNIIEKDPILALKQLDQIRLFAPGTLFEEGAIRRELKVASILGETDLLALLVR 219
Query: 207 AYVTQFHHSIYKDHFISVLLRFFLHGQLKLPDEDIVFTISFFSLEEQRAIYLKIAQNSVI 266
Y +F S Y F L KL E + +S+ + Q Y+++++ ++I
Sbjct: 220 HYAHRFWKSPYAHDFWHEFTPAILQIDEKLSVEQLETLVSYAPTKVQFITYMEVSRAALI 279
Query: 267 SGKRKIGFLAIKQLKRIIDRLDYKDLATIQLYENILNIPFVDIMSLQRSTCNIPYYSLME 326
+ + L+ ++ + +D D + +LY + + + NI Y L +
Sbjct: 280 DARMEKAQLSAQKALTLAHEIDV-DDTSARLYYAMSLAGSITAQESIQMLQNITYKDLSK 338
Query: 327 QDRYLKKASEIIMSEIGKSLIDIDFE-------HIQKDLLL---------DKKEPRHTNV 370
+DR+L A++ + + S + E Q L K++ + +
Sbjct: 339 KDRFLFTAAQAVAKRVISSPLGDQKEKKAQVTLQPQSQGELKLILELEKDAKQQNTISPI 398
Query: 371 SMGIESFIKKNRSQIESIDVLLA 393
+ FI+ R +I ID LL
Sbjct: 399 EAEMNQFIQNTREKINEIDQLLG 421
>gi|90418367|ref|ZP_01226279.1| putative chemotaxis protein motC [Aurantimonas manganoxydans
SI85-9A1]
gi|90338039|gb|EAS51690.1| putative chemotaxis protein motC [Aurantimonas manganoxydans
SI85-9A1]
Length = 420
Score = 275 bits (704), Expect = 7e-72, Method: Composition-based stats.
Identities = 70/373 (18%), Positives = 153/373 (41%), Gaps = 14/373 (3%)
Query: 27 VRTIVPYQCVRSLQRALDEAMRGDISLQKKIPDIVKETGVQLRATHMDVFVDNRNIDAVW 86
R +PY+ VRS+Q D+ RG+ + + +++ G +V+ D RN+ A
Sbjct: 56 ERAPMPYEIVRSVQFLQDQVARGNGAAIRVQAQLLRRYGPTFLEQPPEVWTDPRNLRAAA 115
Query: 87 IYTIISQDLSVVDDLIAKDTKGYFDIAIVYALKKYFSGQLEESSKELSKIKDKDNTRGIV 146
++ + +V+ +++ T + A++ Y + ++ L I + +
Sbjct: 116 LFVLSGGPPAVLRGILSTATIDGDERALLDGALAYVENRARDARAALVPIDVSEMDTALA 175
Query: 147 PYLHLLIGRAMMPFSSQQAVHFFDYVRLTSPGTFLEEIALRNLLEITQN-EVGERAFGYI 205
L+L + + + + A+H + V L +PGT LEE ALR + + ++ A Y
Sbjct: 176 AQLNLAVAQLLQKDAPADALHRLEQVMLAAPGTLLEEAALRMGVLLAEDIGSHAAADRYA 235
Query: 206 RAYVTQFHHSIYKDHFISVLLRFFLHGQLKLPDEDIVFT---ISFFSLEEQRAIYLKIAQ 262
R Y +F S Y +F + + + DE + + +++ AI+L +A+
Sbjct: 236 RQYFDRFADSAYAGNFRARFSAVYAARPAETKDETVATIDNATARIPDDQRLAIFLAVAR 295
Query: 263 NSVISGKRKIGFLAIKQLKRIIDRLDYKDLATIQLYENILNIPFVDIMSLQRSTCNIPYY 322
+++ G + + + + D LY+ + D + + + I
Sbjct: 296 RALVGGNLPLAAAMATEALESGNAVP-ADSQRALLYKTAATLTTGDPVEARVALEAIDVA 354
Query: 323 SLMEQDRYLKKASEIIMSEIGKSLIDIDFEHIQKDLLLDKKEPRHTNVSMGIESFIKKNR 382
+L DR L +A+ ++SE+ K L+ + +D E + + +
Sbjct: 355 TLHPADRKLHEAAYEVLSEMRKPLMAAN---------IDPAERYGPQPPAEQSAVLTRGA 405
Query: 383 SQIESIDVLLAEA 395
+ ++++ L A
Sbjct: 406 ALLDAVRGDLKRA 418
>gi|315122281|ref|YP_004062770.1| chemotaxis protein [Candidatus Liberibacter solanacearum CLso-ZC1]
gi|313495683|gb|ADR52282.1| chemotaxis protein [Candidatus Liberibacter solanacearum CLso-ZC1]
Length = 397
Score = 271 bits (694), Expect = 1e-70, Method: Composition-based stats.
Identities = 237/399 (59%), Positives = 312/399 (78%), Gaps = 5/399 (1%)
Query: 1 MNQKYLICTMMVAMDVFFSFATDQDLVRTIVPYQCVRSLQRALDEAMRGDISLQKKIPDI 60
MNQK LI M++ M+VF SFA +QDL + PY +R LQR LD +++ +KKI DI
Sbjct: 1 MNQKCLIMIMIMVMEVFPSFAMNQDLENSNAPYARIRFLQRVLDSSLQEGGYSKKKILDI 60
Query: 61 VKETGVQLRATHMDVFVDNRNIDAVWIYTIISQDLSVVDDLIAKDTKGYFDIAIVYALKK 120
V+E G+QLR T+M F D+RN+DAV+IYTIIS+++S+++ LIA D KGYFD++IV+AL+K
Sbjct: 61 VEEVGLQLRTTNMSFFADHRNVDAVFIYTIISENISILNYLIANDKKGYFDLSIVHALRK 120
Query: 121 YFSGQLEESSKELSKIKDKDNT--RGIVPYLHLLIGRAMMPFSSQQAVHFFDYVRLTSPG 178
YF+G+ EES K L+ IKD D+ +GI PY +LL+GRAMM +S++A+ FFD VRLTS G
Sbjct: 121 YFAGEFEESIKALNTIKDNDHIHIKGIEPYFYLLMGRAMMKLNSKEAIQFFDRVRLTSSG 180
Query: 179 TFLEEIALRNLLEITQN-EVGERAFGYIRAYVTQFHHSIYKDHFISVLLRFFLHGQLKLP 237
T LEE++LRNLLEIT N + E FGYIR Y+ QF+HSIYKD+FI++LLRFFLH ++KL
Sbjct: 181 TALEEMSLRNLLEITLNQGIEEHVFGYIRDYIRQFYHSIYKDNFINLLLRFFLHSKIKLQ 240
Query: 238 DEDIVFTISFFSLEEQRAIYLKIAQNSVISGKRKIGFLAIKQLKRIIDRLDYKDLATIQL 297
D+DIVF +SF ++EQRAIY KIAQ++VI GKRKIG LAI+QLK ++ +LD++DLATI L
Sbjct: 241 DKDIVFVMSFLEVDEQRAIYFKIAQHAVIFGKRKIGLLAIQQLKEMVYKLDHRDLATIWL 300
Query: 298 YENILNIPFVDIMSLQRSTCNIPYYSLMEQDRYLKKASEIIMSEIGKSLIDIDFEHIQKD 357
Y +++NIPFVD + LQRS CNIP YSLME+DR LKK+SE+I+SE+ KS I+IDF+HI K
Sbjct: 301 YNDLMNIPFVDTVLLQRSLCNIPEYSLMEKDRNLKKSSEVILSEMRKSSINIDFDHIDKY 360
Query: 358 LLLDKKEPRHTNVSMGIESFIKKNRSQIESIDVLLAEAR 396
L+LD K+ HT+ +ESFIKKNR +IE IDV L R
Sbjct: 361 LVLDTKQHEHTH--WNLESFIKKNRQKIEVIDVYLEGTR 397
>gi|114705810|ref|ZP_01438713.1| probable chemotaxis protein precursor [Fulvimarina pelagi HTCC2506]
gi|114538656|gb|EAU41777.1| probable chemotaxis protein precursor [Fulvimarina pelagi HTCC2506]
Length = 458
Score = 270 bits (690), Expect = 3e-70, Method: Composition-based stats.
Identities = 68/353 (19%), Positives = 143/353 (40%), Gaps = 6/353 (1%)
Query: 25 DLVRTIVPYQCVRSLQRALDEAMRGDISLQKKIPDIVKETGVQLRATHMDVFVDNRNIDA 84
R +P++ +RSLQ D+A RG+ + + +++ G L A DV+ D RN+ A
Sbjct: 97 QTEREPMPFEVIRSLQYLQDQAARGNKAALQVQRRLLRRFGPSLSARSSDVWTDKRNVRA 156
Query: 85 VWIYTIISQDLSVVDDLIAKDTKGYFDIAIVYALKKYFSGQLEESSKELSKIKDKDNTRG 144
V ++ + + + +L ++ + Y +++E+ +LS I
Sbjct: 157 VVLFVLSGGPSAPLSELYRAGVFEEKHRPLIEGVLAYADNRMDEAEAKLSTIDLSREETI 216
Query: 145 IVPYLHLLIGRAMMPFSSQQAVHFFDYVRLTSPGTFLEEIALRNLLEITQ-NEVGERAFG 203
+ L + + ++ + V L +PGT L+E ALR + + + E+A
Sbjct: 217 FAAQVRLALAQLREAEDPAGSLMLLEQVMLAAPGTLLDEAALRLGVLLAENAGETEKADR 276
Query: 204 YIRAYVTQFHHSIYKDHFISVLLRFF---LHGQLKLPDEDIVFTISFFSLEEQRAIYLKI 260
Y R Y ++ S+Y +F + + G + + + T+ +++ A+YL +
Sbjct: 277 YARQYFDRYAASVYAGNFRTRFSAVYSDRPKGSEEATLDTLAGTLRLLPDDQKLAMYLSV 336
Query: 261 AQNSVISGKRKIGFLAIKQLKRIIDRLDYKDLATIQLYENILNIPFVDIMSLQRSTCNIP 320
A+ +++ G ++ A ++ I D D LYE + +D + + I
Sbjct: 337 ARRALVGGNLELAAEASREALTIEAA-DPADRQRALLYEVASTLSALDEGEILATLGAIE 395
Query: 321 YYSLMEQDRYLKKASEIIMSEIGKSLI-DIDFEHIQKDLLLDKKEPRHTNVSM 372
L D LK+A+ ++ I + + L + + +
Sbjct: 396 DEQLHPSDLALKEAALDVVDAIREPAEISASAGNTDPALDNQTLKRAASLIDA 448
>gi|170741407|ref|YP_001770062.1| chemotaxis protein [Methylobacterium sp. 4-46]
gi|168195681|gb|ACA17628.1| putative chemotaxis protein precursor [Methylobacterium sp. 4-46]
Length = 445
Score = 266 bits (679), Expect = 6e-69, Method: Composition-based stats.
Identities = 63/369 (17%), Positives = 131/369 (35%), Gaps = 14/369 (3%)
Query: 33 YQCVRSLQRALDEAMRGDISLQKKIPDIVKETGVQLRATHMDVFVDNRNIDAVWIYTIIS 92
+ VR+LQ D RG ++ +L + + N+ A + +
Sbjct: 85 VELVRTLQLLQDRIARGGTQAHLAQRQLIAHIEQRLIGLEPETWGKPANVQAAVTFALAG 144
Query: 93 QDLSVVDDLIAKDTKGYFDIAIVYALKKYFSGQLEESSKELSKIKDKDNTRGIVPYLHLL 152
V+ +I + + ++ + G+ ++ L+K+ + + + L
Sbjct: 145 GGPGVLRRVIEAGSLPDSEAPLLQGALAFLEGRERDARTVLTKLDAQTLPASLGGQVALA 204
Query: 153 IGRAMMPFSSQQAVHFFDYVRLTSPGTFLEEIALRNLLE-ITQNEVGERAFGYIRAYVTQ 211
++ + QA+ D RL +PGT +EE ALR + + Q R Y+ +
Sbjct: 205 QSALVVRENPDQALRLLDLARLLAPGTLVEEGALRREVFVLAQAGNIPRFEALSIQYLRR 264
Query: 212 FHHSIYKDHFISVLLRFFLH---GQLKLPDEDIVFTISFFSLEEQRAIYLKIAQNSVISG 268
F HS+Y +F G + + ++ E + +YL +A+ +V G
Sbjct: 265 FRHSVYAGNFRQRFAAALTRLKYGDDPVRIGRLEAMLAEIEPEGRGDLYLLVARAAVEQG 324
Query: 269 KRKIGFLAIKQLKRIIDRLDYKDLATIQLYENILNIPFVDIMSLQRS-TCNIPYYSLMEQ 327
+ + A + ++ A +LY I D + ++ +L
Sbjct: 325 EMRAAVFAANRAAALV-EAGSVRAAQARLYRAAAAIATPDGFDGAYAVLRSLDRAALPSA 383
Query: 328 DRYLKKASEIIMSEIGKSLIDIDFEHIQKDLLLDKKEPRHTNVSMGIESFIKKNRSQIES 387
D L A+ ++I + L ++ + P+ I + + IE
Sbjct: 384 DAGLLDAALSTAAQIRRDLPPAPATPPEEAADGKRPVPQA--------KTIARAQEAIEQ 435
Query: 388 IDVLLAEAR 396
ID ++ R
Sbjct: 436 IDDMMRRTR 444
>gi|218528677|ref|YP_002419493.1| chemotaxis protein [Methylobacterium chloromethanicum CM4]
gi|218520980|gb|ACK81565.1| chemotaxis protein [Methylobacterium chloromethanicum CM4]
Length = 460
Score = 265 bits (678), Expect = 7e-69, Method: Composition-based stats.
Identities = 54/328 (16%), Positives = 110/328 (33%), Gaps = 6/328 (1%)
Query: 32 PYQCVRSLQRALDEAMRGDISLQKKIPDIVKETGVQLRATHMDVFVDNRNIDAVWIYTII 91
P + R+LQ D RG ++ +L A + + + N+ A + +
Sbjct: 98 PVELTRTLQLLQDRIARGSTQAHLAQRQLLGHIEQRLIALDPESWAEAENVRAAVTFALA 157
Query: 92 SQDLSVVDDLIAKDTKGYFDIAIVYALKKYFSGQLEESSKELSKIKDKDNTRGIVPYLHL 151
+ ++ + + Y G+ E+ +L+ I + G+ L L
Sbjct: 158 GGGPGALRVILRSGKVPETEQPLALGALAYLEGREREARAKLAGIDPRTMPAGLAGQLAL 217
Query: 152 LIGRAMMPFSSQQAVHFFDYVRLTSPGTFLEEIALRNLLE-ITQNEVGERAFGYIRAYVT 210
M+ + +++ D RL +PGT +EE ALR + + Q R Y+
Sbjct: 218 TQSALMVRDAPVKSLELLDLARLLAPGTLVEEGALRRQIFVVAQGGDARRFEALAIQYLR 277
Query: 211 QFHHSIYKDHFISVLLRFFLHGQLKLPDED---IVFTISFFSLEEQRAIYLKIAQNSVIS 267
+F S+Y +F + + E +R +YL +A+ +
Sbjct: 278 RFRRSVYAGNFRQRFAGALTRLDFDSDRTRIASLERMLDEIEPEGRRDLYLLVARAGLEQ 337
Query: 268 GKRKIGFLAIKQLKRIIDRLDYKDLATIQLYENILNIPFVD-IMSLQRSTCNIPYYSLME 326
G+R+ + ++ + D + A +LY I + + +
Sbjct: 338 GRRETALFSAERAMGLAAP-DSQPAAQARLYRGAALIVADGRFEEGYEALRGLERADFVP 396
Query: 327 QDRYLKKASEIIMSEIGKSLIDIDFEHI 354
D L A+ +I +
Sbjct: 397 TDAELLDAALSTARQIRTPSAVAEAVAT 424
>gi|188579879|ref|YP_001923324.1| chemotaxis protein [Methylobacterium populi BJ001]
gi|179343377|gb|ACB78789.1| putative chemotaxis protein precursor [Methylobacterium populi
BJ001]
Length = 429
Score = 264 bits (676), Expect = 1e-68, Method: Composition-based stats.
Identities = 56/317 (17%), Positives = 110/317 (34%), Gaps = 6/317 (1%)
Query: 32 PYQCVRSLQRALDEAMRGDISLQKKIPDIVKETGVQLRATHMDVFVDNRNIDAVWIYTII 91
P + R+LQ D RG ++ +L + + + N+ A + +
Sbjct: 67 PVELTRTLQLLQDRIARGSTQAHLAQRQLLGHIEQRLIELDPEAWAEAENVRAAVTFALA 126
Query: 92 SQDLSVVDDLIAKDTKGYFDIAIVYALKKYFSGQLEESSKELSKIKDKDNTRGIVPYLHL 151
+ + L+ + + Y G+ E+ +L+ I + G+ L L
Sbjct: 127 GGGPAALRVLLKSGKAPEAEQPLALGALAYLEGREREARAKLAGIDPRTMPAGLAGQLAL 186
Query: 152 LIGRAMMPFSSQQAVHFFDYVRLTSPGTFLEEIALRNLLE-ITQNEVGERAFGYIRAYVT 210
M+ + +++ D RL +PGT +EE ALR + + Q R Y+
Sbjct: 187 TQSALMVREAPAKSLELLDLARLLAPGTLVEEGALRRQIFVVAQGGDARRFEALAIQYLR 246
Query: 211 QFHHSIYKDHFISVLLRFFLHGQLKLPDED---IVFTISFFSLEEQRAIYLKIAQNSVIS 267
+F S+Y +F + + E +R +YL +A+ +
Sbjct: 247 RFRRSVYAGNFRQRFAGALTRLDFDSDRTRIASLERMLDEIEPESRRDLYLLVARAGLEQ 306
Query: 268 GKRKIGFLAIKQLKRIIDRLDYKDLATIQLYENILNIPFVD-IMSLQRSTCNIPYYSLME 326
G+R+ A ++ + D + A +LY I + ++ L
Sbjct: 307 GRRETALFAAERAMGLAAP-DSRPAAQARLYRGAALIVADGRFEEGTETLRSLDRADLAA 365
Query: 327 QDRYLKKASEIIMSEIG 343
D L A+ +I
Sbjct: 366 PDAELLDAALSTARQIR 382
>gi|218509334|ref|ZP_03507212.1| chemotaxis protein [Rhizobium etli Brasil 5]
Length = 217
Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats.
Identities = 64/217 (29%), Positives = 109/217 (50%), Gaps = 1/217 (0%)
Query: 56 KIPDIVKETGVQLRATHMDVFVDNRNIDAVWIYTIISQDLSVVDDLIAKDTKGYFDIAIV 115
++ +LR ++ D+RN+DA IY + + ++ LIA D GYFD +
Sbjct: 1 MQRFMLGTIDERLRTADTSIYDDDRNVDAALIYAMSGGNPQTLEYLIAHDVNGYFDNRVT 60
Query: 116 YALKKYFSGQLEESSKELSKIKDKDNTRGIVPYLHLLIGRAMMPFSSQQAVHFFDYVRLT 175
L+KY SG+ +K L + + + I PYL L+ G ++ A+ +D RL
Sbjct: 61 DVLRKYLSGKGLLVAKTLEETAREYRDKKIGPYLALIGGNVLIATKPTDALDLYDQARLA 120
Query: 176 SPGTFLEEIALRNLLEITQN-EVGERAFGYIRAYVTQFHHSIYKDHFISVLLRFFLHGQL 234
+PGT +EE ALR + I + + ++ Y + Y +F HS Y F + ++ +
Sbjct: 121 APGTIVEEAALRRSVAICVDKGLLDKGLAYSQRYARRFLHSPYASQFADLFVKLVVAHDR 180
Query: 235 KLPDEDIVFTISFFSLEEQRAIYLKIAQNSVISGKRK 271
+ +D+V +SF QR +YL+IA+ + ISGK +
Sbjct: 181 DVRPQDVVDILSFMDAPRQREVYLRIARAAAISGKPE 217
>gi|240137208|ref|YP_002961677.1| chemotaxis protein MotC [Methylobacterium extorquens AM1]
gi|240007174|gb|ACS38400.1| chemotaxis protein MotC [Methylobacterium extorquens AM1]
Length = 459
Score = 263 bits (671), Expect = 5e-68, Method: Composition-based stats.
Identities = 54/328 (16%), Positives = 110/328 (33%), Gaps = 6/328 (1%)
Query: 32 PYQCVRSLQRALDEAMRGDISLQKKIPDIVKETGVQLRATHMDVFVDNRNIDAVWIYTII 91
P + R+LQ D RG ++ +L A + + + N+ A + +
Sbjct: 97 PVELTRTLQLLQDRIARGSTQAHLAQRQLLGHIEQRLIALDPESWAEAENVRAAVTFALA 156
Query: 92 SQDLSVVDDLIAKDTKGYFDIAIVYALKKYFSGQLEESSKELSKIKDKDNTRGIVPYLHL 151
+ ++ + + Y G+ E+ +L+ I + G+ L L
Sbjct: 157 GGGPGALRVILRSGKVPEAEQPLALGALAYLEGREREARAKLAGIDPRTMPAGLAGQLAL 216
Query: 152 LIGRAMMPFSSQQAVHFFDYVRLTSPGTFLEEIALRNLLE-ITQNEVGERAFGYIRAYVT 210
M+ + +++ D RL +PGT +EE ALR + + Q R Y+
Sbjct: 217 TQSALMVRDAPVKSLELLDLARLLAPGTLVEEGALRRQIFVVAQGGDARRFEALAIQYLR 276
Query: 211 QFHHSIYKDHFISVLLRFFLHGQLKLPDED---IVFTISFFSLEEQRAIYLKIAQNSVIS 267
+F S+Y +F + + E +R +YL +A+ +
Sbjct: 277 RFRRSVYAGNFRQRFAGALTRLDFDSDRTRIASLERMLDEIEPEGRRDLYLLVARAGLEQ 336
Query: 268 GKRKIGFLAIKQLKRIIDRLDYKDLATIQLYENILNIPFVD-IMSLQRSTCNIPYYSLME 326
G+R+ + ++ + D + A +LY I + + +
Sbjct: 337 GRRETALFSAERAMGLAAP-DSQPAAQARLYRGAALIVADGRFEEGYEALRGLDRTDFIP 395
Query: 327 QDRYLKKASEIIMSEIGKSLIDIDFEHI 354
D L A+ +I +
Sbjct: 396 TDAELLDAALSTARQIRTPSAVAEAAAT 423
>gi|163850074|ref|YP_001638117.1| chemotaxis protein [Methylobacterium extorquens PA1]
gi|163661679|gb|ABY29046.1| putative chemotaxis protein precursor [Methylobacterium extorquens
PA1]
Length = 460
Score = 260 bits (665), Expect = 3e-67, Method: Composition-based stats.
Identities = 54/328 (16%), Positives = 110/328 (33%), Gaps = 6/328 (1%)
Query: 32 PYQCVRSLQRALDEAMRGDISLQKKIPDIVKETGVQLRATHMDVFVDNRNIDAVWIYTII 91
P + R+LQ D RG ++ +L A + + + N+ A + +
Sbjct: 98 PVELTRTLQLLQDRIARGSTQAHLAQRQLLGHIEQRLIALDPESWAEAENVRAAVTFALA 157
Query: 92 SQDLSVVDDLIAKDTKGYFDIAIVYALKKYFSGQLEESSKELSKIKDKDNTRGIVPYLHL 151
+ ++ + + Y G+ E+ +L+ I + G+ L L
Sbjct: 158 GGGPGALRVILRSGKVPEAEQPLALGALAYLEGREREARAKLAGIDPRTMPAGLAGQLAL 217
Query: 152 LIGRAMMPFSSQQAVHFFDYVRLTSPGTFLEEIALRNLLE-ITQNEVGERAFGYIRAYVT 210
M+ + +++ D RL +PGT +EE ALR + + Q R Y+
Sbjct: 218 TQSALMVRDAPVKSLELLDLARLLAPGTLVEEGALRRQIFVVAQGGDARRFEALAIQYLR 277
Query: 211 QFHHSIYKDHFISVLLRFFLHGQLKLPDED---IVFTISFFSLEEQRAIYLKIAQNSVIS 267
+F S+Y +F + + E +R +YL +A+ +
Sbjct: 278 RFRRSVYAGNFRQRFAGALTRLDFDSDRTRIASLERMLDEIEPEGRRDLYLLVARAGLEQ 337
Query: 268 GKRKIGFLAIKQLKRIIDRLDYKDLATIQLYENILNIPFVD-IMSLQRSTCNIPYYSLME 326
G+R+ + ++ + D + A +LY I + + +
Sbjct: 338 GRRETALFSAERAMGLAAP-DSQPAAQARLYRGAALIVADGRFEEGYEALRGLDRTDFVP 396
Query: 327 QDRYLKKASEIIMSEIGKSLIDIDFEHI 354
D L A+ +I +
Sbjct: 397 TDAELLDAALSTARQIRTPSAVAEAAAT 424
>gi|254559219|ref|YP_003066314.1| chemotaxis protein MotC [Methylobacterium extorquens DM4]
gi|254266497|emb|CAX22261.1| chemotaxis protein MotC [Methylobacterium extorquens DM4]
Length = 459
Score = 259 bits (661), Expect = 7e-67, Method: Composition-based stats.
Identities = 54/328 (16%), Positives = 110/328 (33%), Gaps = 6/328 (1%)
Query: 32 PYQCVRSLQRALDEAMRGDISLQKKIPDIVKETGVQLRATHMDVFVDNRNIDAVWIYTII 91
P + R+LQ D RG ++ +L A + + + N+ A + +
Sbjct: 97 PVELTRTLQLLQDRIARGSTQAHLAQRQLLGHIEQRLIALDPETWAEAENVRAAVTFALA 156
Query: 92 SQDLSVVDDLIAKDTKGYFDIAIVYALKKYFSGQLEESSKELSKIKDKDNTRGIVPYLHL 151
+ ++ + + Y G+ E+ +L+ I + G+ L L
Sbjct: 157 GGGPGALRVILRSGKVPEAEQPLALGALAYLEGREREARAKLAGIDPRTMPAGLAGQLAL 216
Query: 152 LIGRAMMPFSSQQAVHFFDYVRLTSPGTFLEEIALRNLLE-ITQNEVGERAFGYIRAYVT 210
M+ + +++ D RL +PGT +EE ALR + + Q R Y+
Sbjct: 217 TQSALMVRDAPVKSLELLDLARLLAPGTLVEEGALRRQIFVVAQGGDARRFEALAIQYLR 276
Query: 211 QFHHSIYKDHFISVLLRFFLHGQLKLPDED---IVFTISFFSLEEQRAIYLKIAQNSVIS 267
+F S+Y +F + + E +R +YL +A+ +
Sbjct: 277 RFRRSVYAGNFRQRFAGALTRLDFDSDRTRIASLERMLDEIEPEGRRDLYLLVARAGLEQ 336
Query: 268 GKRKIGFLAIKQLKRIIDRLDYKDLATIQLYENILNIPFVD-IMSLQRSTCNIPYYSLME 326
G+R+ + ++ + D + A +LY I + + +
Sbjct: 337 GRRETALFSAERAMGLAAP-DSQPSAQARLYRGAALIVADGRFEEGYEALRGLDRTDFVP 395
Query: 327 QDRYLKKASEIIMSEIGKSLIDIDFEHI 354
D L A+ +I +
Sbjct: 396 TDAELLDAALSTARQIRTPSAIAEAAAT 423
>gi|300024595|ref|YP_003757206.1| hypothetical protein Hden_3090 [Hyphomicrobium denitrificans ATCC
51888]
gi|299526416|gb|ADJ24885.1| hypothetical protein Hden_3090 [Hyphomicrobium denitrificans ATCC
51888]
Length = 424
Score = 250 bits (638), Expect = 3e-64, Method: Composition-based stats.
Identities = 60/367 (16%), Positives = 129/367 (35%), Gaps = 9/367 (2%)
Query: 34 QCVRSLQRALDEAMRGDISLQKKIPDIVKETGVQLRATHMDVFVDNRNIDAVWIYTIISQ 93
+ + L D ++GD ++ E +RA + + + ++Y +
Sbjct: 62 RLLARLGTVQDIVVQGDEGALADQGRLLSEISAVVRAFEKSDWDNYAQVRDAFVYVLSGG 121
Query: 94 DLSVVDDLIAKDTKGYFDIAIVYALKKYFSGQLEESSKELSKIKDKDNTRGIVPYLHLLI 153
D V+ L DT+ D + + KY GQ + K + + + +V L
Sbjct: 122 DYGVLKPLANDDTRHEADRTLAQGIIKYAQGQTSAARKLWADVDPRSVDVSLVGPFALAR 181
Query: 154 GRAMMPFSSQQAVHFFDYVRLTSPGTFLEEIALRNLLE-ITQNEVGERAFGYIRAYVTQF 212
+ +A+ D RL P T +EE A+R + + +RA + Y+ ++
Sbjct: 182 ASLYIGNDDAKAIALLDEARLACPHTAIEEAAVRREIPVLVSKGETQRAMLLLTDYLRRY 241
Query: 213 HHSIYKDH-FISVLLRFFLHGQLKLPD--EDIVFTISFFSLEEQRAIYLKIAQNSVISGK 269
SIY F + D E + S + + + L +A + +G+
Sbjct: 242 GRSIYAWKLFRDFSAAAAKRDEFDGRDMVEKLTEATSTADRQSRIDLLLAMAAAGLPAGR 301
Query: 270 RKIGFLAIKQLKRIIDRLDYKDLATIQLYENILNIPFVDIMSLQRSTCNIPYYSLMEQDR 329
+ A + + +DL LY+ N P + I L D
Sbjct: 302 ISLAQAAANEALSLKPD-SAEDLDRAMLYQAAANAPSTRAAEALSALRQITADRLTGNDV 360
Query: 330 YLKKASEIIMSEIGKSLIDIDFEHIQKDLLLDKKEPRHTNVSMGIESFIKKNRSQIESID 389
+++ + I + ++ + + + + + VS +K + IE +
Sbjct: 361 EIREVAGYIAQTVTQNKFAPASDARNAETEVSRAATELSRVSTA----VKSADAAIEEAN 416
Query: 390 VLLAEAR 396
++++ +
Sbjct: 417 MIMSGTK 423
>gi|304392496|ref|ZP_07374436.1| putative chemotaxis protein [Ahrensia sp. R2A130]
gi|303295126|gb|EFL89486.1| putative chemotaxis protein [Ahrensia sp. R2A130]
Length = 389
Score = 244 bits (623), Expect = 2e-62, Method: Composition-based stats.
Identities = 56/376 (14%), Positives = 132/376 (35%), Gaps = 22/376 (5%)
Query: 25 DLVRTIVPYQCVRSLQRALDEAMRGDISLQKKIPDIVKETGVQL----RATHMDVFVDNR 80
++ + +R+L D GD + +++ + + D ++ R
Sbjct: 26 EISDPLPATTMLRTLHAVQDRIATGDAASLPLQKHLLELIAPSIAGLAKVKTPDALLEER 85
Query: 81 NIDAVWIYTIISQDLSVVDDLIAKDTKGYFDIAIVYALKKYFSGQLEESSKELSKIKDKD 140
N A +Y + +A A+ +A+ G+ + + KI+
Sbjct: 86 NT-AFILYALSGGAADTARGALAVIDHDEPLRALAHAVADNIGGRRVRALRRFLKIEMTS 144
Query: 141 NTRGIVPYLHLLIGRAMMPFSSQQAVHFFDYVRLTSPGTFLEEIALRNLLEITQNE-VGE 199
+VPY+ L G+ + + V +PGT LEE ALR L++ +
Sbjct: 145 LPVSLVPYVALAKGQLLAQSEPDAGIVLLSIVGQLAPGTLLEEAALRRKLQLALRGKMAA 204
Query: 200 RAFGYIRAYVTQFHHSIYKDHFISVLLRFFLHGQLKLPDEDIVFTISFFSLEEQRAIYLK 259
R + R Y +F S Y+ F L + + + +D+ ++ + + ++
Sbjct: 205 RFYAAARQYTYRFIGSPYRASFAQALQKAAV--EFPEHGDDLDAVLALMPENLRSPMQVR 262
Query: 260 IAQNSVISGKRKIGFLAIKQLKRIIDRLDYKDLATIQLYENILNIPFVDIMSLQRSTCNI 319
IA+ ++++G+ + ++++ + E + + D+ ++ ++
Sbjct: 263 IARMALLAGQDGLARKMVQRVDIEGQVGEVARRTQSLFVEAVSRLAGKDVKEQRKILVSL 322
Query: 320 PYYSLMEQDRYLKKASEIIMSEIGKSLIDIDFEHIQKDLLLDKKEPRHTNVSMGIESFIK 379
L +D+ L + I I + Q + +
Sbjct: 323 DRRFLNAEDKKLVDVAVAIADTIVSPVSRAAGTQKQS--------------TTDRLPVVG 368
Query: 380 KNRSQIESIDVLLAEA 395
+ ++D LL+E+
Sbjct: 369 LANETLAAVDALLSES 384
>gi|312115286|ref|YP_004012882.1| hypothetical protein Rvan_2568 [Rhodomicrobium vannielii ATCC
17100]
gi|311220415|gb|ADP71783.1| hypothetical protein Rvan_2568 [Rhodomicrobium vannielii ATCC
17100]
Length = 386
Score = 238 bits (606), Expect = 1e-60, Method: Composition-based stats.
Identities = 62/387 (16%), Positives = 134/387 (34%), Gaps = 14/387 (3%)
Query: 14 MDVFFSFATDQDLVRTIVPYQCVRSLQRALDEAMRGDISLQKKIPDIVKETGVQLRATHM 73
+ + S A+ Q R +R R D R S + + + LR
Sbjct: 10 VALVTSVASTQAAEREQALIMDLRDDARRFDAVARTQASSMEM-AEARERFAAHLRDAAH 68
Query: 74 DVFVDNRNIDAVWIYTIISQDLSVVDDLIAKDTKGYFDIAIVYALKKYFSGQLEESSKEL 133
++ + I+ + + + D G + ++ + + SG + L
Sbjct: 69 LKLKNDEFLKFAEIFVLSGGGVEHI-KPWKDDQPGEMERNLIRGIVAHGSGDTTRAEAIL 127
Query: 134 SKIKDKDNTRGIVPYLHLLIGRAMMPFSSQQAVHFFDYVRLTSPGTFLEEIALRNLLEIT 193
I + +L L+ +Q+A ++ RL PGT +EE ALR + +
Sbjct: 128 LAIDARSLDAVRGGHLALVQALLAARTDAQRAFSYYGLARLLLPGTLVEEAALRQSIVLA 187
Query: 194 QNEV-GERAFGYIRAYVTQFHHSIYKDHFISVLLRFFLHGQLKLPDEDIVFTISFFSLEE 252
++ + AY+ +F S + + ++ + + + + +
Sbjct: 188 GEKLRAQEFAEAALAYIRRFDTSTFAGDAETRIVSYLPRFEDADGAAILERMLEARPMGF 247
Query: 253 QR---AIYLKIAQNSVISGKRKIGFLAIKQLKRIIDRLDYKDLATIQLYENILNIPFVDI 309
R ++AQ V+SG+R + LA + ++ D + LY+ + I
Sbjct: 248 GRCPVCFLTEVAQRGVLSGRRSLVLLATGKGLALV-ENDAPQKQRLLLYQAAVEIVTDKY 306
Query: 310 MSLQRSTCNIPYYSLMEQDRYLKKASEIIMSEIGKSLIDIDFEHIQKDLLLDKKEPRHTN 369
+ ++ S D L AS + ++ ++ + E + R N
Sbjct: 307 EGASDTLKSLNPESFDADDAALLSASLQLARKLRETPKPLSDE-------VALAGNRGGN 359
Query: 370 VSMGIESFIKKNRSQIESIDVLLAEAR 396
E + + R+ + + D++L R
Sbjct: 360 RVFLGEKRVMEARAAVANADLVLQRER 386
>gi|296447980|ref|ZP_06889886.1| chemotaxis protein [Methylosinus trichosporium OB3b]
gi|296254490|gb|EFH01611.1| chemotaxis protein [Methylosinus trichosporium OB3b]
Length = 377
Score = 224 bits (571), Expect = 2e-56, Method: Composition-based stats.
Identities = 59/344 (17%), Positives = 127/344 (36%), Gaps = 7/344 (2%)
Query: 33 YQCVRSLQRALDEAMRGDISLQKKIPDIVKETGVQLRATHMDVFVDNRNIDAVWIYTIIS 92
VR L D RG + + IP V+ + D + + N A Y +
Sbjct: 26 VDLVRKLTGLQDGMARGAATARAAIPAQVERIQTAIATAEADSWKERANGRAAATYLLGG 85
Query: 93 QDLSVVDDLIAKDTKGYFDIAIVYALKKYFSGQLEESSKELSKIKDKDNTRGIVPYLHLL 152
+ + + D ++ A Y G+ ++ ++I K+ + +L L+
Sbjct: 86 GSPRAIRKIFDANLFSDADRPLIDASLAYAEGRSRDAMPMFAQIDPKEQPATLGGHLALV 145
Query: 153 IGRAMMPFSSQQAVHFFDYVRLTSPGTFLEEIALRNLLEITQN-EVGERAFGYIRAYVTQ 211
G ++ + +A D RL P + +EE ALR + + + + R YV Q
Sbjct: 146 RGGLLIGSDNARARELLDLARLLMPSSLVEEAALRREVAVVDPLQDAAKFLLLARRYVAQ 205
Query: 212 FHHSIYKDHFISVLLRFFLHGQLKLPDEDIVFTISFFS---LEEQRAIYLKIAQNSVISG 268
+ S + +F + L +P+ + ++ F + +++ IAQN+++ G
Sbjct: 206 YSRSPFARNFWGEARAATIRVALDIPERQLGEFLALFDATPAATRFDLHMTIAQNAILHG 265
Query: 269 KRKIGFLAIKQLKRIIDRLDYKDLATIQLYENILNIPFVDIMSLQRSTCNIPYYSLMEQD 328
+ + L + + D ++ A + L L D + + SL D
Sbjct: 266 RPALAALETDRAATLAD--THQAKARVALNRAALTALGGDFEAAASEFAALDVSSLERGD 323
Query: 329 RYLKKASEIIMSEIGKSLIDIDFE-HIQKDLLLDKKEPRHTNVS 371
+ L+ + + S + + +L +++ + + S
Sbjct: 324 KELRAVVAGAIDHLRLSPEAAEKTMSARDELPVERAARQALDDS 367
>gi|323139664|ref|ZP_08074706.1| chemotaxis protein [Methylocystis sp. ATCC 49242]
gi|322395096|gb|EFX97655.1| chemotaxis protein [Methylocystis sp. ATCC 49242]
Length = 386
Score = 205 bits (522), Expect = 9e-51, Method: Composition-based stats.
Identities = 57/364 (15%), Positives = 131/364 (35%), Gaps = 14/364 (3%)
Query: 35 CVRSLQRALDEAMRGDISLQKKIPDIVKETGVQLRATHMDVFVDNRNIDAVWIYTIISQD 94
VR L + + GD ++ + + + + + +N+ A IY +
Sbjct: 29 MVRDLNGMQNRMVMGDEKARENVARQFDLIERTIMTLEPETWTEEKNVRAAAIYLLCGGA 88
Query: 95 LSVVDDLIAKDTKGYFDIAIVYALKKYFSGQLEESSKELSKIKDKDNTRGIVPYLHLLIG 154
+ + ++ ++ A +Y GQ +E++ +L + + +L L+ G
Sbjct: 89 PTNLREIFDAKFVSDELSPLLEAALRYAEGQ-DEAAAKLMDFDARHFPPILGGHLALVQG 147
Query: 155 RAMMPFSSQQAVHFFDYVRLTSPGTFLEEIALRNLLEITQNE-VGERAFGYIRAYVTQFH 213
+++ + +A+ D RL P + +EE ALR + E ++ + YV ++
Sbjct: 148 GSVIGSDNARAIALLDLARLLMPASLVEEAALRREIRAVDPETDADKVSALVNRYVAKYT 207
Query: 214 HSIYKDHFISVLLRFF---LHGQLKLPDEDIVFTISFFSLEEQRAIYLKIAQNSVISGKR 270
S Y +F + L I S +++ IYL +++ ++++G+
Sbjct: 208 ASPYAQNFWTELRSIVFSPSINADAELLAKFEGAIEKASTDQRLDIYLLLSRRAILNGRL 267
Query: 271 KIGFLAIKQLKRIIDRLDYKDLATIQLYENILNIPFVDIMSLQRSTCNIPYYSLMEQDRY 330
+ + ++ D + + I Y NI+ S + + +L +D
Sbjct: 268 GEAASKLDKAEQAAD--NPQAHKRIVTYRNIVKSLSKGDASSASNLQDTDLSALTREDSE 325
Query: 331 LKKASEIIMSEIGKSLIDIDFEHIQKDLLLDKKEPRHTNVSMGIESFIKKNRSQIESIDV 390
+ K + +++ + K + + I R +E D
Sbjct: 326 MLKIASGVLARLEKPAETDRHA-------IGASAAAPEVTANDEPPIIASARVALEKSDE 378
Query: 391 LLAE 394
LL
Sbjct: 379 LLKR 382
>gi|218515864|ref|ZP_03512704.1| chemotaxis protein [Rhizobium etli 8C-3]
Length = 202
Score = 134 bits (336), Expect = 4e-29, Method: Composition-based stats.
Identities = 39/198 (19%), Positives = 79/198 (39%), Gaps = 29/198 (14%)
Query: 227 RFFLHGQLKLPDEDIVFTISFFSLEEQRAIYLKIAQNSVISGKRKIGFLAIKQLKRIIDR 286
+ + + +D+V +SF QR +YL+IA+ + ISGK ++ +A+++++ +
Sbjct: 1 KLVVAHDRDVKPQDVVDILSFMDAPRQREVYLRIARAAAISGKPELARMAVERVQSLGAG 60
Query: 287 LDYKDLATIQLYENILNIPFVDIMSLQRSTCNIPYYSLMEQDRYLKKASEIIMSEIGKSL 346
D Y + +P DI ++ I +L +D+ L+ A+ + +I ++
Sbjct: 61 TDNAFGPLADFYGGMAGLPTQDIDRAAKNVSGIDGNALSPRDQALQAAARSVAEQILRAP 120
Query: 347 IDIDFEHI--------------------QKDLLLDKKEPRHTNVSMGIES---------F 377
Q EP V+ +S F
Sbjct: 121 DPASLTQASDPNTSHQEITSEKAAAIAMQPGAPGAPPEPVPGGVASTGQSQDTDPSFNAF 180
Query: 378 IKKNRSQIESIDVLLAEA 395
+ +RS+++ ID LLA+
Sbjct: 181 VTTSRSKLDEIDGLLAQE 198
>gi|13472588|ref|NP_104155.1| chemotaxis MOTC protein [Mesorhizobium loti MAFF303099]
gi|14023334|dbj|BAB49941.1| chemotaxis motc protein [Mesorhizobium loti MAFF303099]
Length = 222
Score = 98.2 bits (243), Expect = 2e-18, Method: Composition-based stats.
Identities = 24/132 (18%), Positives = 51/132 (38%)
Query: 235 KLPDEDIVFTISFFSLEEQRAIYLKIAQNSVISGKRKIGFLAIKQLKRIIDRLDYKDLAT 294
+ + + S E ++ IYL+IA+ + I G ++ A + ++ D +
Sbjct: 2 SISQDKLADITSMMDPEREKVIYLRIARRAAIDGLSELSAFASARAEQGRDGNTNQGDPR 61
Query: 295 IQLYENILNIPFVDIMSLQRSTCNIPYYSLMEQDRYLKKASEIIMSEIGKSLIDIDFEHI 354
+LY ++ + I ++ I L + DR L A++ I E+ +
Sbjct: 62 AELYSSLSTVTSGTIEDVRTKLGKIDRSKLSDGDRALLDAAQAIAGEVVAPPASLPGATP 121
Query: 355 QKDLLLDKKEPR 366
L + +P
Sbjct: 122 ASAALAPQPKPE 133
>gi|218196737|gb|EEC79164.1| hypothetical protein OsI_19839 [Oryza sativa Indica Group]
Length = 1661
Score = 43.1 bits (100), Expect = 0.072, Method: Composition-based stats.
Identities = 18/118 (15%), Positives = 38/118 (32%), Gaps = 11/118 (9%)
Query: 34 QCVRSLQRALDEAMRGDISLQKKIPDIVKETGVQLRATHMDVFVDNRNIDAVWIYTIISQ 93
+ +RSL A + G +L E + A +V + ++N + I+ + +
Sbjct: 504 RLIRSLLEAQN--ADGYTALHLACRRGSAEIVEAIVAYQENVDLLDKNENPPIIFAMAAG 561
Query: 94 DLSVVDDLIAKDTKGYFDIAIVYAL---KKYF---SGQLEESSKEL-SKIKDKDNTRG 144
V L+ + + + L + GQ E + L +
Sbjct: 562 SPQCVRALVRR--SSDVNSRLREGLGPTLAHVCAHHGQPECMRELLMAGADPNAVDGE 617
>gi|301118604|ref|XP_002907030.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262108379|gb|EEY66431.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 6248
Score = 43.1 bits (100), Expect = 0.073, Method: Composition-based stats.
Identities = 31/288 (10%), Positives = 81/288 (28%), Gaps = 47/288 (16%)
Query: 102 IAKDTKGYFDIAIVYALKKYFSGQLEESSKELSKIKDKDNTRGIVPYLHLLIGRAMMPFS 161
++ + + L+ F L + E+ +I+ ++ ++ + L
Sbjct: 4568 VSDAEASEEERRAMEVLEASFETNLASAEAEVREIR-REKETELLAQVCALSANKAAEE- 4625
Query: 162 SQQAVHFFDYVRLTSPGTFLE-EIAL-RNLLEITQNEVGERAFGYIRAYVTQFHHSIYKD 219
A+ D RL + E E A + + + +R ++ + S
Sbjct: 4626 --AALMLLDAARLEAERVRAEYEAAFTSRVQQPEDDGSVDREIALVQRAHARGVKS---- 4679
Query: 220 HFISVLLRFFLHGQLKLPDEDIVFTISFFSLEEQRAIYLKIAQNSVISGKRKIGFLAIKQ 279
+ + + A+ + ++ + + A ++
Sbjct: 4680 -----------------RRDQLDAETA--------------ARKAALTARLEHKRRAARK 4708
Query: 280 LKRIIDRLDYKDLATIQLYENILNIPFVDIMSLQRSTCNIPYYSLMEQDR---YLKKASE 336
D+ E + ++ + + + E++R L++A E
Sbjct: 4709 GDE--SGKTEADIEKALQLEEQQELGAIEHERAVKE-RELDVEAAQEKERLANALREAHE 4765
Query: 337 IIMSEIGKSLIDIDFEHIQKDLLLDKKEPRHTNVSMGIESFIKKNRSQ 384
++I + L H + LD+ R Q
Sbjct: 4766 RGAADIERQLAACKQAHDIESTKLDETLRAERARQELALKQRLNARRQ 4813
>gi|222631480|gb|EEE63612.1| hypothetical protein OsJ_18429 [Oryza sativa Japonica Group]
Length = 1635
Score = 43.1 bits (100), Expect = 0.081, Method: Composition-based stats.
Identities = 18/118 (15%), Positives = 38/118 (32%), Gaps = 11/118 (9%)
Query: 34 QCVRSLQRALDEAMRGDISLQKKIPDIVKETGVQLRATHMDVFVDNRNIDAVWIYTIISQ 93
+ +RSL A + G +L E + A +V + ++N + I+ + +
Sbjct: 478 RLIRSLLEAQN--ADGYTALHLACRRGSAEIVEAIVAYQENVDLLDKNENPPIIFAMAAG 535
Query: 94 DLSVVDDLIAKDTKGYFDIAIVYAL---KKYF---SGQLEESSKEL-SKIKDKDNTRG 144
V L+ + + + L + GQ E + L +
Sbjct: 536 SPQCVRALVRR--SSDVNSRLREGLGPTLAHVCAHHGQPECMRELLMAGADPNAIDGE 591
>gi|330916061|ref|XP_003297277.1| hypothetical protein PTT_07622 [Pyrenophora teres f. teres 0-1]
gi|311330133|gb|EFQ94619.1| hypothetical protein PTT_07622 [Pyrenophora teres f. teres 0-1]
Length = 883
Score = 42.3 bits (98), Expect = 0.15, Method: Composition-based stats.
Identities = 15/134 (11%), Positives = 46/134 (34%), Gaps = 7/134 (5%)
Query: 262 QNSVISGKRKIGFLAIKQLKRIIDRLDYKDLATI----QLYENILNIPFVDIMSLQRSTC 317
+ + +R+ A K+ + D + Y + + F + +
Sbjct: 424 RQAANRARREAQSNAHKRQRTDNDGVSAPGFKRAKETTDTYTSAGIVFFDPKDAQSKEVR 483
Query: 318 NIPYYSLMEQDRYLKKASEIIMSEIGKSLIDIDFEHIQKDLLLDKKEPRHTNVSMGIESF 377
++ + +D K++ + E+ K+ D + + + G E+
Sbjct: 484 DVHKDIMHTRDSQSNKSAAARLKELLKAKADGTSLPEPEQTPDSEPA---LESASGTETP 540
Query: 378 IKKNRSQIESIDVL 391
++ + +++ +D L
Sbjct: 541 VQLGKRKLDEVDDL 554
>gi|300694327|ref|YP_003750300.1| tpr repeat domain [Ralstonia solanacearum PSI07]
gi|299076364|emb|CBJ35677.1| conserved hypothethical protein, tpr repeat domain [Ralstonia
solanacearum PSI07]
Length = 700
Score = 41.6 bits (96), Expect = 0.25, Method: Composition-based stats.
Identities = 29/221 (13%), Positives = 64/221 (28%), Gaps = 20/221 (9%)
Query: 51 ISLQKKIPDIV---KETGVQLRATHMDVFVDNRNIDAVWIYTII-------SQDLSVVDD 100
+ ++ A + + R +DA L V+D
Sbjct: 183 AEAHSNLAFLLSAQGRYDEAAAAAQHAIELSPRLVDAYLNLAAAEMGRHRHGAALRVLDG 242
Query: 101 LIAKDTKGYFDIAIVYALKKYFSGQLEESSKELSKIKDKDNTRGIVPYLHLLIGRAMMPF 160
L + + + + + +E+ ++ R + L + +
Sbjct: 243 LSTFAPQHPAALTARAKVLRQVE-RPDEALA-FARQAVALAPRSAEAHHALAMALQALGQ 300
Query: 161 SSQQAVHFFDYVRLTSPGTFLEEIALRNLLEITQNEVGERAFGYIRAYVTQFHHSIYKDH 220
+ + HF RL PG EE + + + + A + +F S+
Sbjct: 301 TDEALPHFEQAARL--PGAVAEEALVGRATLLMEAGRRDAALAAFDQALERFPGSV---- 354
Query: 221 FISVLLRFFLHGQLKLPDEDIVFTISFFSLEEQRAIYLKIA 261
L D DI + + E+R++ +I+
Sbjct: 355 --QALAGLADARTFTAGDSDIAALEACLAEGERRSLRDRIS 393
>gi|158520052|ref|YP_001527922.1| SpoIID/LytB domain-containing protein [Desulfococcus oleovorans
Hxd3]
gi|158508878|gb|ABW65845.1| SpoIID/LytB domain [Desulfococcus oleovorans Hxd3]
Length = 508
Score = 41.2 bits (95), Expect = 0.28, Method: Composition-based stats.
Identities = 28/133 (21%), Positives = 50/133 (37%), Gaps = 15/133 (11%)
Query: 85 VWIYTIISQDLSVVDDLIAKDTKGYFDIAIVYALKKYFSGQLEESSKELSKIKDKDNTRG 144
V ++ + D L A A + +G+ E+ + D G
Sbjct: 4 VLLHAANGGLPAESDFLFA------------QAETQVAAGRYLEAIGLYQTVADTTPDAG 51
Query: 145 IVPYLHLLIGRAMMPFSSQ--QAVHFFDYVRLTSPGTFL-EEIALRNLLEITQNEVGERA 201
LL+G A + Q +A+ +FDY+ PG+ EE R + + + E +A
Sbjct: 52 EKARALLLVGYAHAQYLDQHDKALLYFDYILTNWPGSAAAEEALYRKGMVLYETERYAKA 111
Query: 202 FGYIRAYVTQFHH 214
+ AY ++ H
Sbjct: 112 YQAFTAYQERYPH 124
>gi|254473317|ref|ZP_05086714.1| hypothetical protein PJE062_4139 [Pseudovibrio sp. JE062]
gi|211957433|gb|EEA92636.1| hypothetical protein PJE062_4139 [Pseudovibrio sp. JE062]
Length = 129
Score = 41.2 bits (95), Expect = 0.31, Method: Composition-based stats.
Identities = 8/91 (8%), Positives = 28/91 (30%), Gaps = 1/91 (1%)
Query: 265 VISGKRKIGFLAIKQLKRIIDRLDYKDLATIQLYENILNIPFVDIMSLQRSTCNIPYYSL 324
++SG + + + +LY + D ++ L
Sbjct: 1 MVSGNTAFAVKGSEAFLEHGSEN-AEQINEAKLYLSAAKASGEDWEEAITGLVDVKSTDL 59
Query: 325 MEQDRYLKKASEIIMSEIGKSLIDIDFEHIQ 355
+++ L+ ++ + + I + + +
Sbjct: 60 SPENQLLQISAIAMANTIREWPQPETPDASE 90
>gi|189191016|ref|XP_001931847.1| 5'-3' exoribonuclease 2 [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187973453|gb|EDU40952.1| 5'-3' exoribonuclease 2 [Pyrenophora tritici-repentis Pt-1C-BFP]
Length = 1104
Score = 40.8 bits (94), Expect = 0.44, Method: Composition-based stats.
Identities = 17/134 (12%), Positives = 48/134 (35%), Gaps = 7/134 (5%)
Query: 262 QNSVISGKRKIGFLAIKQLKRIIDRLDYKDLATI----QLYENILNIPFVDIMSLQRSTC 317
+ + +R+ A K+ + D + Y + + F + +
Sbjct: 424 RQAANRARREAQSNAHKRQRTDNDGVSAPGFKRAKETTDTYTSAGIVFFDPKDAQSKEVR 483
Query: 318 NIPYYSLMEQDRYLKKASEIIMSEIGKSLIDIDFEHIQKDLLLDKKEPRHTNVSMGIESF 377
++ + +D K++ + E+ K+ D + + EP + + G E+
Sbjct: 484 DVHKDIMHSRDSQSNKSAAARLKEMLKAK--ADGTSLPEPEPTPDSEPA-SESASGTETP 540
Query: 378 IKKNRSQIESIDVL 391
+ + +++ +D L
Sbjct: 541 VHLGKRKLDEVDDL 554
>gi|325263496|ref|ZP_08130230.1| ABC transporter, permease protein [Clostridium sp. D5]
gi|324031205|gb|EGB92486.1| ABC transporter, permease protein [Clostridium sp. D5]
Length = 1028
Score = 40.0 bits (92), Expect = 0.63, Method: Composition-based stats.
Identities = 21/137 (15%), Positives = 45/137 (32%), Gaps = 6/137 (4%)
Query: 261 AQNSVISGKRKIGFLAIKQLKRIIDRLDYKDLATIQLYENILNIPFVDIM-SLQRSTCNI 319
AQ V++GK + Q + + + L I D R+ I
Sbjct: 333 AQADVLNGKVEELNQVKAQYEALAASGMTDEQTQYTLQVMYAQITEGDAQIEAART--QI 390
Query: 320 P--YYSLMEQDRYLKKASEIIMSEIGKSLIDIDFEHIQKDLLLDKKEPRHTNVSMGIESF 377
L + + A I + L + E K+ L+ + + + ++
Sbjct: 391 DAARGQLDSGQQQINDAWAQI-EQAQSELASGESELASKEQELNDAQAEYDDAKSEADTK 449
Query: 378 IKKNRSQIESIDVLLAE 394
IK +I+ + +++
Sbjct: 450 IKDGEKKIKDAEKDISK 466
>gi|330965739|gb|EGH65999.1| cellulose synthase operon protein C [Pseudomonas syringae pv.
actinidiae str. M302091]
Length = 1298
Score = 40.0 bits (92), Expect = 0.68, Method: Composition-based stats.
Identities = 43/334 (12%), Positives = 87/334 (26%), Gaps = 47/334 (14%)
Query: 30 IVPYQCVRSLQRALDEAMRGDISLQKKIPDIVKE-----TGVQLRATHMDVFVDNRNIDA 84
+ Q SLQ+A D +G S + + + V+L + V +DA
Sbjct: 348 LENVQLWTSLQQARDLQAKGQTSQAQALLAQAQRQNPDNIDVRLTLADVQV--QAGQLDA 405
Query: 85 V-----WIYTIISQDLSVVDDLI----AKDTKGYFDI---AIVYALKKYF--SGQLEESS 130
+ + + LI + + + SG+ +
Sbjct: 406 AQAGYRQVLATQRGNPQAIRGLINVLAQRGQADEALRLLDTLSPGEQAKLGDSGRFKALR 465
Query: 131 KELSKIKDKDNTRGIVPYLHLLIGRAMMPFSSQQAVHFFDYVRLTSPGTFLEEI----AL 186
+ L + FD RL +E AL
Sbjct: 466 STQVARLAEQRGDVRAAQAALKDA---VKNDPDNVWTRFDLARLYLK---TDEAPKARAL 519
Query: 187 RNLLEITQNEVGERAFGYIRAYVTQFHHSIYKDHFISVLLRFFLHGQLKLPDEDIVFTIS 246
+ L Q + + S+ F + D+
Sbjct: 520 IDELLKAQPNDIDALYTGA-------LLSVEMGQ-WQDAQTTFARIPVDQRTPDMKALAD 571
Query: 247 FFSLEEQRAIYLKIAQNSVISGKRKIGFLAIKQLKRIIDRLDYKDLATIQLYENILNIPF 306
++ Q + + IA+ G+R+ + +L+ + + L Y + P
Sbjct: 572 EITMTVQINLAIGIARR----GQRQEALALLDRLQPVASGSPERQLTLANAYIDAGE-PA 626
Query: 307 VDIMSLQRSTCNIPYYSLMEQDRYLKKASEIIMS 340
+ + P D L+ A ++
Sbjct: 627 RGRDMARAAIAQAPV---PSADLMLQYAGLLLAG 657
>gi|313668665|ref|YP_004048949.1| periplasmic protein [Neisseria lactamica ST-640]
gi|313006127|emb|CBN87588.1| putative periplasmic protein [Neisseria lactamica 020-06]
Length = 614
Score = 39.6 bits (91), Expect = 0.78, Method: Composition-based stats.
Identities = 28/194 (14%), Positives = 61/194 (31%), Gaps = 13/194 (6%)
Query: 145 IVPYLHLLIGRAMMPFSSQQAVHFFDYVRLTSPGTFLEEIALRNLLEITQNEVGERAFGY 204
+ L G+A A + R SP + E AL + + E E +
Sbjct: 73 LGGETALQKGQAGT----ALAAYMLMLERTKSPE--VAERALEMAVSLNAFEQAEMIY-- 124
Query: 205 IRAYVTQFHHSIYKDHFISVLLRFFLHGQLKLPDEDIVFTISFFSLEEQRAIYLKIAQNS 264
Q K + LR L + + + ++ + R ++L +AQ +
Sbjct: 125 --QKWRQIEPIPGKAQKRAGWLRNVLRERGNQHLDGLEEVLAQADEGQNRRVFLLLAQAA 182
Query: 265 VISGKRKIGFLAIKQLKRIIDRLDY-KDLATIQLYENILNIPFVDIMSLQRSTCNIPYYS 323
V + + A K ++R + + A + ++ ++ + +
Sbjct: 183 VQ--QDGLAQKASKAVRRASLEYGHLPEAAVADVVFSLQAREKEKAIAALQRLSKLDAEI 240
Query: 324 LMEQDRYLKKASEI 337
L L+ +
Sbjct: 241 LPPTFIALRLTARQ 254
>gi|320161155|ref|YP_004174379.1| beta-ketoacyl synthase family protein [Anaerolinea thermophila UNI-1]
gi|319995008|dbj|BAJ63779.1| beta-ketoacyl synthase family protein [Anaerolinea thermophila UNI-1]
Length = 2805
Score = 39.6 bits (91), Expect = 0.89, Method: Composition-based stats.
Identities = 23/149 (15%), Positives = 44/149 (29%), Gaps = 19/149 (12%)
Query: 33 YQCVRSLQRALDEAMRGDISLQKKIPDIVKETGVQLRATHMDVFVDNRNIDAVWIYTIIS 92
Q +RSLQR + D + ++I E ++RA D +
Sbjct: 1282 IQQLRSLQRL----ISPDTEVYREIQRRADEIDEKIRAL------DYHFDRRFVFRVLSM 1331
Query: 93 QDLSVVDDLIAKDTKGYFDIAIVYA--LKKYFS-----GQLEESSKELSK-IKDKDNTRG 144
+ + A+ + + A G+ + +
Sbjct: 1332 GHSQFAEYIGARGPNTHVNAACATTTHAIAIAEDWIRAGRARRVVIIAGDDVTSGALSEW 1391
Query: 145 IVPYLHLLIGRAMMPFSSQQAVHFFDYVR 173
I L + G A + ++A+ FD R
Sbjct: 1392 IGTSL-MASGAATVEGDPRKAILPFDRRR 1419
>gi|50419777|ref|XP_458420.1| DEHA2C16830p [Debaryomyces hansenii CBS767]
gi|52782854|sp|Q6BTP9|GRPE_DEBHA RecName: Full=GrpE protein homolog, mitochondrial; Flags: Precursor
gi|49654086|emb|CAG86502.1| DEHA2C16830p [Debaryomyces hansenii]
Length = 243
Score = 39.6 bits (91), Expect = 0.92, Method: Composition-based stats.
Identities = 21/137 (15%), Positives = 50/137 (36%), Gaps = 13/137 (9%)
Query: 258 LKIAQNSVISGKRKIGFLAIKQLKRIIDRLDYKDLATIQLYENILNIPFVDIMSLQRSTC 317
+++ + +V++ + + A + + + D + Q E + +
Sbjct: 22 MRVVRPTVLAPRMSMIRFASTEASKKEGKEDKAEAQGSQEPETAAE-TNKEAEGAKVEVS 80
Query: 318 NIPY--YSLMEQDRYLKKASEIIMSEIGKSLIDIDFEHIQKDLLLDKKEPRHTNVSMGIE 375
I L ++DR L I DF ++Q+ L+K++ R ++
Sbjct: 81 EIDELKAKLTKKDRELADMKNHYARAI------ADFRNLQESTKLEKQKARD----FALQ 130
Query: 376 SFIKKNRSQIESIDVLL 392
F K +++ D+ L
Sbjct: 131 KFAKDLLESVDNFDLAL 147
>gi|91216690|ref|ZP_01253655.1| hypothetical protein P700755_08509 [Psychroflexus torquis ATCC
700755]
gi|91185159|gb|EAS71537.1| hypothetical protein P700755_08509 [Psychroflexus torquis ATCC
700755]
Length = 516
Score = 39.6 bits (91), Expect = 0.96, Method: Composition-based stats.
Identities = 20/155 (12%), Positives = 50/155 (32%), Gaps = 12/155 (7%)
Query: 245 ISFFSLEEQRAIYLKIAQNSVISGKRKIGFL-AIKQLKRIIDRLDYKDLATIQLYENILN 303
+ F ++E I L I + ++ G + A+ Q+ I+ + QL +N
Sbjct: 339 LGFRQMQEGELILLTINRAALAQGYGSVALSPAVLQVLGILQQGGTPTQEQAQLVLGAVN 398
Query: 304 IPFVDIMSLQRSTCNIPYYSLMEQD--RYLKKA-------SEIIMSEIGKSLIDIDFEHI 354
I L + L +A ++ +++ +G+ +
Sbjct: 399 GIDDKDALDSSELSAISNARLSYNSTIQSLAEANGLAFVDADALLNRVGQGISFPGGIIT 458
Query: 355 QKDLLLDKKEPRHTNVSMGIESFIKKNRSQIESID 389
+ +++ + I +E+I+
Sbjct: 459 SDFVTGGGFSLDGVHLTPRGYALI--ANETLEAIN 491
>gi|309779289|ref|ZP_07674051.1| sensory box sensor/GGDEF/EAL domain protein [Ralstonia sp.
5_7_47FAA]
gi|308921847|gb|EFP67482.1| sensory box sensor/GGDEF/EAL domain protein [Ralstonia sp.
5_7_47FAA]
Length = 863
Score = 39.2 bits (90), Expect = 1.1, Method: Composition-based stats.
Identities = 27/222 (12%), Positives = 67/222 (30%), Gaps = 17/222 (7%)
Query: 182 EEIALRNLLEITQNEVGERAFGYIRAYVTQFHHSIYKDHFISVLLRFFLHGQLKLPDEDI 241
EE+ R E+ R Y + H I + L +++
Sbjct: 425 EEVIWRQANFDPLTELPNRHMFY-----NRLRHEI--ARARQASTQLALLFIDLDRFKEV 477
Query: 242 VFTISFFSLEEQRAIYLKIAQN--SVISGKRKIGFLAIKQLKRIIDRLDYKDLATIQLYE 299
T+ ++ + +IA+ +++ G + LA + I+ L AT +
Sbjct: 478 NDTLGH---DQGDVLLKEIARRISAIVRGTDTVARLAGDEFTIILPDLPDAGAATPIIRA 534
Query: 300 NILNIPFV-DIMSLQRSTCNIPYYSLMEQDRYLKKASEIIMSEIGKSLIDIDFEH-IQKD 357
+ I + ++ +D ++ + + +
Sbjct: 535 LLARIAAPLQLGEESVEVSASIGVAMYPRDADSAESLLVRADQAMFAAKSAGRNQWAVFT 594
Query: 358 LLLDKKEPRHTNVSMGIESFIKKNRSQIE---SIDVLLAEAR 396
L + E V+ + + + + + +D+L + R
Sbjct: 595 PALQRAEQERLRVTSDLRVALTQGQLAVHYQPIVDLLTGKVR 636
>gi|73979211|ref|XP_849280.1| PREDICTED: similar to secreted frizzled-related protein 1 [Canis
familiaris]
Length = 393
Score = 39.2 bits (90), Expect = 1.1, Method: Composition-based stats.
Identities = 16/159 (10%), Positives = 36/159 (22%), Gaps = 18/159 (11%)
Query: 233 QLKLPDEDIVFTISFFSLEEQRAIYLKIAQNSVISGKRKIGFLAIKQLKRIIDRLDYKDL 292
+ P + EQ + L + + +G A R+
Sbjct: 38 EESSPVSRLAERSKRMRPSEQPPLQLPLREREGPAG----ASQADLGGFRLAGPGSGFVR 93
Query: 293 ATIQLYENILNIPFVDIMSLQRSTCN------IPYYSLMEQDRYLKKASEIIMSEIGKSL 346
+ + LY QR +P + +R L + + G+
Sbjct: 94 SRLPLYCG--------PGGQQRELGQRVRLRELPVGHRLLPERALVHQAAAVRGHPGRPP 145
Query: 347 IDIDFEHIQKDLLLDKKEPRHTNVSMGIESFIKKNRSQI 385
+ H + + ++
Sbjct: 146 AVPQRGLQEDGAAQPAGARDHGRGEAAGQQLGAPAQQEL 184
>gi|218186505|gb|EEC68932.1| hypothetical protein OsI_37627 [Oryza sativa Indica Group]
Length = 1041
Score = 39.2 bits (90), Expect = 1.1, Method: Composition-based stats.
Identities = 23/146 (15%), Positives = 49/146 (33%), Gaps = 5/146 (3%)
Query: 240 DIVFTISFFSLEEQRAIYLKIAQNSVI--SGKRKIGFLAIKQLKRIIDR--LDYKDLATI 295
D+V ++ E+ + L AQ +V+ G + A K+ I L
Sbjct: 857 DLVPILAHQYFSEKLPVTLHGAQAAVLFCMGLQDKDIGATKEELGIEREQVLSNFIKTMK 916
Query: 296 QLYENILNIPFVDIMSLQRSTCNIPYYSLMEQDRYLKKASEIIMSEIGKSLIDIDFEHIQ 355
+LY + NI +I + I L D L +A+ + + +++ + D +
Sbjct: 917 KLYGYLHNIAGKEIEATLPRLKEIDTAPLKSLDEDLDEAAREVKEQ-RRAIDEDDVDPKF 975
Query: 356 KDLLLDKKEPRHTNVSMGIESFIKKN 381
+ + ++
Sbjct: 976 LQMYAIDADDDEIEKALNGGKISASG 1001
>gi|213967293|ref|ZP_03395442.1| cellulose synthase operon protein C [Pseudomonas syringae pv.
tomato T1]
gi|213928135|gb|EEB61681.1| cellulose synthase operon protein C [Pseudomonas syringae pv.
tomato T1]
Length = 1230
Score = 39.2 bits (90), Expect = 1.3, Method: Composition-based stats.
Identities = 44/334 (13%), Positives = 88/334 (26%), Gaps = 47/334 (14%)
Query: 30 IVPYQCVRSLQRALDEAMRGDISLQKKIPDIVKE-----TGVQLRATHMDVFVDNRNIDA 84
+ Q SLQ A D +G S + + + V+L + V +DA
Sbjct: 280 LENVQLWTSLQEARDLQAKGQTSQAQALLAQAQRQNPDNIDVRLTLADVQV--QAGQLDA 337
Query: 85 V-----WIYTIISQDLSVVDDLI----AKDTKGYFDI---AIVYALKKYF--SGQLEESS 130
+ + + LI + + + SG+ +
Sbjct: 338 AQAGYRQVLATQRGNPQAIRGLINVLAQRGQADEALRLLDTLSPGEQSKLGDSGRFKALR 397
Query: 131 KELSKIKDKDNTRGIVPYLHLLIGRAMMPFSSQQAVHFFDYVRLTSPGTFLEEI----AL 186
+ L + FD RL +E AL
Sbjct: 398 STQVARLAEQRGDVRAAQAALKDA---VKNDPDNVWTRFDLARLYLK---TDEAPKARAL 451
Query: 187 RNLLEITQNEVGERAFGYIRAYVTQFHHSIYKDHFISVLLRFFLHGQLKLPDEDIVFTIS 246
+ L Q + + S+ F + D+
Sbjct: 452 IDELLKAQPNNIDALYTSA-------LLSVEMGQ-WQDAQTTFTRIPVDQRTPDMKALAD 503
Query: 247 FFSLEEQRAIYLKIAQNSVISGKRKIGFLAIKQLKRIIDRLDYKDLATIQLYENILNIPF 306
++ Q + + IA+ G+R+ + +L+ + + L Y + P
Sbjct: 504 EVTMTVQINLAIGIARR----GQRQEALALLDRLQPVASGSPERQLTLASAYIDAGE-PA 558
Query: 307 VDIMSLQRSTCNIPYYSLMEQDRYLKKASEIIMS 340
+ + P L D L+ A ++ +
Sbjct: 559 RGREMARAAIAQAP---LPSADLMLQYAGLLLAA 589
>gi|163846912|ref|YP_001634956.1| hypothetical protein Caur_1339 [Chloroflexus aurantiacus J-10-fl]
gi|163668201|gb|ABY34567.1| Tetratricopeptide TPR_2 repeat protein [Chloroflexus aurantiacus
J-10-fl]
Length = 2494
Score = 39.2 bits (90), Expect = 1.3, Method: Composition-based stats.
Identities = 12/101 (11%), Positives = 32/101 (31%), Gaps = 2/101 (1%)
Query: 197 VGERAFGYIRAYVTQFHHSIYKDHFISVLLRFFLHGQLKLPDEDIVFTISFFSLEEQRAI 256
R +AY+ S ++ + G L + + +S
Sbjct: 2388 DAGRYEEAEQAYLAAVRASPTAGNYNKLATALIDWGWLDKAEIALGQALST-DPGLP-DP 2445
Query: 257 YLKIAQNSVISGKRKIGFLAIKQLKRIIDRLDYKDLATIQL 297
Y ++A+ + + + A+++ ++ + A L
Sbjct: 2446 YFQLARLFMQRNQTTLAQDALQRYLQLAPEGRWAGEARQML 2486
>gi|222524734|ref|YP_002569205.1| tetratricopeptide repeat-containing protein [Chloroflexus sp.
Y-400-fl]
gi|222448613|gb|ACM52879.1| Tetratricopeptide TPR_2 repeat protein [Chloroflexus sp. Y-400-fl]
Length = 2490
Score = 38.9 bits (89), Expect = 1.3, Method: Composition-based stats.
Identities = 12/101 (11%), Positives = 32/101 (31%), Gaps = 2/101 (1%)
Query: 197 VGERAFGYIRAYVTQFHHSIYKDHFISVLLRFFLHGQLKLPDEDIVFTISFFSLEEQRAI 256
R +AY+ S ++ + G L + + +S
Sbjct: 2384 DAGRYEEAEQAYLAAVRASPTAGNYNKLATALIDWGWLDKAEIALGQALST-DPGLP-DP 2441
Query: 257 YLKIAQNSVISGKRKIGFLAIKQLKRIIDRLDYKDLATIQL 297
Y ++A+ + + + A+++ ++ + A L
Sbjct: 2442 YFQLARLFMQRNQTTLAQDALQRYLQLAPEGRWAGEARQML 2482
>gi|222616707|gb|EEE52839.1| hypothetical protein OsJ_35372 [Oryza sativa Japonica Group]
Length = 1024
Score = 38.9 bits (89), Expect = 1.3, Method: Composition-based stats.
Identities = 23/146 (15%), Positives = 48/146 (32%), Gaps = 5/146 (3%)
Query: 240 DIVFTISFFSLEEQRAIYLKIAQNSVI--SGKRKIGFLAIKQLKRIIDR--LDYKDLATI 295
D+V ++ E+ + L AQ +V+ G + A K+ I L
Sbjct: 840 DLVPILAHQYFSEKLPVTLHGAQAAVLFCMGLQDKDIGATKEELGIEREQVLSNFIKTMK 899
Query: 296 QLYENILNIPFVDIMSLQRSTCNIPYYSLMEQDRYLKKASEIIMSEIGKSLIDIDFEHIQ 355
+LY + NI +I + I L D L +A+ + + +++ + D +
Sbjct: 900 KLYGYLHNIAGKEIEATLPRLKEIDTAPLKSLDEDLDEAAREVKEQ-RRAIDEDDVDPKF 958
Query: 356 KDLLLDKKEPRHTNVSMGIESFIKKN 381
+ ++
Sbjct: 959 LQKYAIDADDDEIEKALNGGKISASG 984
>gi|319948137|ref|ZP_08022300.1| putative FAD-binding dehydrogenase [Dietzia cinnamea P4]
gi|319438205|gb|EFV93162.1| putative FAD-binding dehydrogenase [Dietzia cinnamea P4]
Length = 606
Score = 38.9 bits (89), Expect = 1.4, Method: Composition-based stats.
Identities = 12/102 (11%), Positives = 28/102 (27%), Gaps = 4/102 (3%)
Query: 35 CVR-SLQRALDEAMRGDISLQKKIPDIVKETGVQLRATHMDVFVDNRNIDAVWIYTIISQ 93
VR +++ +DE + D + A +
Sbjct: 209 LVRFAVRHRVDEIVVDDGRAVGVRGATLVPCDYDRGVASPREETGEFEFRAKAVLLASGG 268
Query: 94 ---DLSVVDDLIAKDTKGYFDIAIVYALKKYFSGQLEESSKE 132
+ +V D G ++ + ++ G++ E S
Sbjct: 269 IGGNPDLVRKYWPTDRLGDVPENLIVGVPEHVDGRMLEISAR 310
>gi|256832463|ref|YP_003161190.1| ABC transporter-like protein [Jonesia denitrificans DSM 20603]
gi|256685994|gb|ACV08887.1| ABC transporter related [Jonesia denitrificans DSM 20603]
Length = 631
Score = 38.9 bits (89), Expect = 1.4, Method: Composition-based stats.
Identities = 13/92 (14%), Positives = 26/92 (28%), Gaps = 9/92 (9%)
Query: 88 YTIISQDLSVVDDLIAKDTKGYFDIAIVYALKKYFSGQLEESSKELSKIKDKDNTRGIVP 147
Y + + IA+ DI ++ + + E + +
Sbjct: 525 YRMSGGERQ--RLAIARLLLKEPDIVVLDEATAHLDSESEAAVSA-------ALREALAG 575
Query: 148 YLHLLIGRAMMPFSSQQAVHFFDYVRLTSPGT 179
L+I + A+ D R+ GT
Sbjct: 576 RTALVIAHRLSTVRDADAILVLDQGRIVEQGT 607
>gi|15676254|ref|NP_273388.1| hypothetical protein NMB0339 [Neisseria meningitidis MC58]
gi|7225559|gb|AAF40782.1| conserved hypothetical protein [Neisseria meningitidis MC58]
gi|316984343|gb|EFV63317.1| tetratricopeptide repeat family protein [Neisseria meningitidis
H44/76]
gi|325132894|gb|EGC55571.1| hypothetical protein NMBM6190_0274 [Neisseria meningitidis M6190]
gi|325134920|gb|EGC57552.1| hypothetical protein NMBM13399_0337 [Neisseria meningitidis M13399]
gi|325138879|gb|EGC61429.1| hypothetical protein NMBES14902_0323 [Neisseria meningitidis
ES14902]
gi|325140988|gb|EGC63494.1| hypothetical protein NMBCU385_0299 [Neisseria meningitidis CU385]
gi|325143053|gb|EGC65404.1| hypothetical protein NMB9615945_0384 [Neisseria meningitidis
961-5945]
gi|325199533|gb|ADY94988.1| conserved hypothetical protein [Neisseria meningitidis H44/76]
Length = 389
Score = 38.9 bits (89), Expect = 1.5, Method: Composition-based stats.
Identities = 27/171 (15%), Positives = 48/171 (28%), Gaps = 10/171 (5%)
Query: 115 VYALKKYFSGQLEESSKELSKIKDKDNTRGIVPYLHLLIGRAMMPFSSQQAVHFFDYVRL 174
+ AL SG+ E+ + + L+L +G+ L
Sbjct: 48 LDALVDRNSGRAARELAEVVDGRPQSYD------LNLTLGKLYRQRGENDKAINIHRTML 101
Query: 175 TSPGTFLEEIALRNLLEITQNEVGERAFGYIRAYVTQFHHSIYKDHFISVLLRFFLHGQL 234
SP T E+ A R L E+ QN LL + +
Sbjct: 102 DSPDTVGEKRA-RVLFELAQNYQSAGLVDRAEQIFLGLQDGKMAREARQHLLNIYQQDRD 160
Query: 235 KLPDEDIVFTISFFSLEEQRAI---YLKIAQNSVISGKRKIGFLAIKQLKR 282
+ +S Q I Y ++AQ ++ + + +
Sbjct: 161 WEKAVETARLLSHDDQTYQFEIAQFYCELAQAALFKSNFDVARFNVGKALE 211
>gi|301383072|ref|ZP_07231490.1| cellulose synthase operon protein C [Pseudomonas syringae pv.
tomato Max13]
gi|302060343|ref|ZP_07251884.1| cellulose synthase operon protein C [Pseudomonas syringae pv.
tomato K40]
gi|302130910|ref|ZP_07256900.1| cellulose synthase operon protein C [Pseudomonas syringae pv.
tomato NCPPB 1108]
Length = 1298
Score = 38.9 bits (89), Expect = 1.6, Method: Composition-based stats.
Identities = 44/334 (13%), Positives = 88/334 (26%), Gaps = 47/334 (14%)
Query: 30 IVPYQCVRSLQRALDEAMRGDISLQKKIPDIVKE-----TGVQLRATHMDVFVDNRNIDA 84
+ Q SLQ A D +G S + + + V+L + V +DA
Sbjct: 348 LENVQLWTSLQEARDLQAKGQTSQAQALLAQAQRQNPDNIDVRLTLADVQV--QAGQLDA 405
Query: 85 V-----WIYTIISQDLSVVDDLI----AKDTKGYFDI---AIVYALKKYF--SGQLEESS 130
+ + + LI + + + SG+ +
Sbjct: 406 AQAGYRQVLATQRGNPQAIRGLINVLAQRGQADEALRLLDTLSPGEQSKLGDSGRFKALR 465
Query: 131 KELSKIKDKDNTRGIVPYLHLLIGRAMMPFSSQQAVHFFDYVRLTSPGTFLEEI----AL 186
+ L + FD RL +E AL
Sbjct: 466 STQVARLAEQRGDVRAAQAALKDA---VKNDPDNVWTRFDLARLYLK---TDEAPKARAL 519
Query: 187 RNLLEITQNEVGERAFGYIRAYVTQFHHSIYKDHFISVLLRFFLHGQLKLPDEDIVFTIS 246
+ L Q + + S+ F + D+
Sbjct: 520 IDELLKAQPNNIDALYTSA-------LLSVEMGQ-WQDAQTTFTRIPVDQRTPDMKALAD 571
Query: 247 FFSLEEQRAIYLKIAQNSVISGKRKIGFLAIKQLKRIIDRLDYKDLATIQLYENILNIPF 306
++ Q + + IA+ G+R+ + +L+ + + L Y + P
Sbjct: 572 EVTMTVQINLAIGIARR----GQRQEALALLDRLQPVASGSPERQLTLASAYIDAGE-PA 626
Query: 307 VDIMSLQRSTCNIPYYSLMEQDRYLKKASEIIMS 340
+ + P L D L+ A ++ +
Sbjct: 627 RGREMARAAIAQAP---LPSADLMLQYAGLLLAA 657
>gi|194100505|ref|YP_002003350.1| gp16 [Yersinia phage Yepe2]
gi|193201238|gb|ACF15719.1| gp16 [Yersinia phage Yepe2]
Length = 1315
Score = 38.5 bits (88), Expect = 1.7, Method: Composition-based stats.
Identities = 14/92 (15%), Positives = 28/92 (30%), Gaps = 8/92 (8%)
Query: 4 KYLICTMMVAMDVFFSFATDQDLVRTIVPYQCVRSLQRALDEAMRGDISLQKKI--PDIV 61
K + AMD++ A + P++ D G + ++
Sbjct: 1058 KRKLANDPRAMDLWR-LADKVADETMLRPHKV-----SLQDSHAFGATAKLVLQFKSFVI 1111
Query: 62 KETGVQLRATHMDVFVDNRNIDAVWIYTIISQ 93
K + + + F + R +D Y I
Sbjct: 1112 KSMNSKFIRSGNEAFKNQRAMDMALTYAISGG 1143
>gi|300114549|ref|YP_003761124.1| TonB-dependent receptor [Nitrosococcus watsonii C-113]
gi|299540486|gb|ADJ28803.1| TonB-dependent receptor [Nitrosococcus watsonii C-113]
Length = 1125
Score = 38.5 bits (88), Expect = 1.7, Method: Composition-based stats.
Identities = 27/222 (12%), Positives = 65/222 (29%), Gaps = 21/222 (9%)
Query: 115 VYALKKYFSGQLEESSKELSKIKDKDNTRGIVPYLHLLIGRAMMPFSSQQAVHFFDYVRL 174
+ A G+++E+ ++ L A++ ++A+
Sbjct: 252 LQAALLLVVGRVDEARSKIQH--ALQLDPDQGTAYALQAIIALVQNQKEKALSLAQQAAK 309
Query: 175 TSPGTFLEEIALRNLLEITQNEVGERAFGYIRAYVTQFHHSIYKDHFISVLLRFFLHGQL 234
P + + +IAL ERA + + + F + + + L
Sbjct: 310 LDPRSPIPQIAL--SYVYQGMFNIERALAHAQQAIELFPGAPLA---WARVAELQLSLGN 364
Query: 235 KLPDEDIVFTISFFSLEEQRAIYLKIAQNSVISGKRKIGFLAIKQLK---RIIDRLDYKD 291
+ +A+ + G + + I++ K + LD D
Sbjct: 365 SEKAAKAAQQAVALDPD--------LARTQTVQGFADLTAIDIEEAKGAFKRAIELDPAD 416
Query: 292 LATIQLYENILNIPFVDIMSLQRSTCNIPYYSLMEQDRYLKK 333
+L + I D+ + + SL + ++
Sbjct: 417 P-LSRLGLGLAKIRQGDLKAGTQEIE--IAASLDPNNSLIRS 455
>gi|281202107|gb|EFA76312.1| dynamin like protein [Polysphondylium pallidum PN500]
Length = 1644
Score = 38.5 bits (88), Expect = 1.8, Method: Composition-based stats.
Identities = 19/85 (22%), Positives = 27/85 (31%), Gaps = 6/85 (7%)
Query: 163 QQAVHFFDYVRLTSPGTFLEEIALRNLLEITQNEVGERAFGYIRAYVTQFHHSIYKDHFI 222
A+ FF LT P T + AL + QN E Y +F SI F
Sbjct: 1171 ADALTFF----LTLPTTAANKSALNEAILQLQNRDAEVLEQL--QYDRRFERSIGLTSFR 1224
Query: 223 SVLLRFFLHGQLKLPDEDIVFTISF 247
+ + E + +F
Sbjct: 1225 HAISELTWRRYQEAIPEVLKRLRAF 1249
>gi|77553763|gb|ABA96559.1| expressed protein [Oryza sativa Japonica Group]
Length = 659
Score = 38.5 bits (88), Expect = 1.8, Method: Composition-based stats.
Identities = 23/146 (15%), Positives = 48/146 (32%), Gaps = 5/146 (3%)
Query: 240 DIVFTISFFSLEEQRAIYLKIAQNSVI--SGKRKIGFLAIKQLKRIIDR--LDYKDLATI 295
D+V ++ E+ + L AQ +V+ G + A K+ I L
Sbjct: 475 DLVPILAHQYFSEKLPVTLHGAQAAVLFCMGLQDKDIGATKEELGIEREQVLSNFIKTMK 534
Query: 296 QLYENILNIPFVDIMSLQRSTCNIPYYSLMEQDRYLKKASEIIMSEIGKSLIDIDFEHIQ 355
+LY + NI +I + I L D L +A+ + + +++ + D +
Sbjct: 535 KLYGYLHNIAGKEIEATLPRLKEIDTAPLKSLDEDLDEAAREVKEQ-RRAIDEDDVDPKF 593
Query: 356 KDLLLDKKEPRHTNVSMGIESFIKKN 381
+ ++
Sbjct: 594 LQKYAIDADDDEIEKALNGGKISASG 619
>gi|291542494|emb|CBL15604.1| DNA primase, catalytic core [Ruminococcus bromii L2-63]
Length = 588
Score = 38.5 bits (88), Expect = 1.9, Method: Composition-based stats.
Identities = 16/95 (16%), Positives = 40/95 (42%), Gaps = 6/95 (6%)
Query: 48 RGDISLQKKIPDIVK-ETGVQLRATHMDVFVDNRNI---DAVWIYTIISQDLSVVDDLIA 103
RG+ + +KK ++ E + + + F R+ +A+ +Y + + +++ A
Sbjct: 430 RGERAEEKKQARQIQLELSRRNDKINPEHFQKPRSSSAEEALLVYLLN--NPDAYEEISA 487
Query: 104 KDTKGYFDIAIVYALKKYFSGQLEESSKELSKIKD 138
+ F ++ +YFS ++E L+
Sbjct: 488 RVKPEQFQNTLMRRFFEYFSARIERGEDPLTNTAA 522
>gi|325145134|gb|EGC67416.1| hypothetical protein NMBM01240013_0360 [Neisseria meningitidis
M01-240013]
Length = 389
Score = 38.5 bits (88), Expect = 1.9, Method: Composition-based stats.
Identities = 27/171 (15%), Positives = 48/171 (28%), Gaps = 10/171 (5%)
Query: 115 VYALKKYFSGQLEESSKELSKIKDKDNTRGIVPYLHLLIGRAMMPFSSQQAVHFFDYVRL 174
+ AL SG+ E+ + + L+L +G+ L
Sbjct: 48 LDALVDRNSGRAARELAEVVDGRPQSYD------LNLTLGKLYRQRGENDKAINIHRTML 101
Query: 175 TSPGTFLEEIALRNLLEITQNEVGERAFGYIRAYVTQFHHSIYKDHFISVLLRFFLHGQL 234
SP T E+ A R L E+ QN LL + +
Sbjct: 102 DSPDTVGEKRA-RVLFELAQNYQSAGLVDRAEQIFLGLQDGKMAREARQHLLNIYQQDRD 160
Query: 235 KLPDEDIVFTISFFSLEEQRAI---YLKIAQNSVISGKRKIGFLAIKQLKR 282
+ +S Q I Y ++AQ ++ + + +
Sbjct: 161 WEKAVETARLLSHDDQTYQFEIAQFYCELAQAALFKSNFDVARFNVGKALE 211
>gi|161870730|ref|YP_001599903.1| tetratricopeptide repeat protein [Neisseria meningitidis 053442]
gi|161596283|gb|ABX73943.1| periplasmic hypothetical protein [Neisseria meningitidis 053442]
Length = 402
Score = 38.5 bits (88), Expect = 1.9, Method: Composition-based stats.
Identities = 27/171 (15%), Positives = 48/171 (28%), Gaps = 10/171 (5%)
Query: 115 VYALKKYFSGQLEESSKELSKIKDKDNTRGIVPYLHLLIGRAMMPFSSQQAVHFFDYVRL 174
+ AL SG+ E+ + + L+L +G+ L
Sbjct: 61 LDALVDRNSGRAARELAEVVDGRPQSYD------LNLTLGKLYRQRGENDKAINIHRTML 114
Query: 175 TSPGTFLEEIALRNLLEITQNEVGERAFGYIRAYVTQFHHSIYKDHFISVLLRFFLHGQL 234
SP T E+ A R L E+ QN LL + +
Sbjct: 115 DSPDTVGEKRA-RVLFELAQNYQSAGLVDRAEQIFLGLQDGKMAREARQHLLNIYQQDRD 173
Query: 235 KLPDEDIVFTISFFSLEEQRAI---YLKIAQNSVISGKRKIGFLAIKQLKR 282
+ +S Q I Y ++AQ ++ + + +
Sbjct: 174 WEKAVETARLLSHDDQTYQFEIAQFYCELAQAALFKSNFDVARFNVGKALE 224
>gi|119637782|ref|YP_919018.1| Internal virion protein D [Yersinia phage Berlin]
gi|119391813|emb|CAJ70686.1| hypothetical protein [Yersinia phage Berlin]
Length = 1315
Score = 38.5 bits (88), Expect = 2.0, Method: Composition-based stats.
Identities = 14/92 (15%), Positives = 29/92 (31%), Gaps = 8/92 (8%)
Query: 4 KYLICTMMVAMDVFFSFATDQDLVRTIVPYQCVRSLQRALDEAMRGDISLQKKI--PDIV 61
K + AMD++ A + P++ D G + ++
Sbjct: 1058 KRKLANDPRAMDLWR-LADKVADETMLRPHKV-----SLQDSHAFGATAKLVLQFKSFVI 1111
Query: 62 KETGVQLRATHMDVFVDNRNIDAVWIYTIISQ 93
K + + + F ++R +D Y I
Sbjct: 1112 KSMNSKFIRSGNEAFKNHRAMDMALTYAISGG 1143
>gi|293607618|ref|ZP_06689952.1| tetratricopeptide TPR_2 [Achromobacter piechaudii ATCC 43553]
gi|292814051|gb|EFF73198.1| tetratricopeptide TPR_2 [Achromobacter piechaudii ATCC 43553]
Length = 628
Score = 38.5 bits (88), Expect = 2.0, Method: Composition-based stats.
Identities = 49/390 (12%), Positives = 102/390 (26%), Gaps = 59/390 (15%)
Query: 51 ISLQKKIPDIVKETGVQLRATHMDVFVDNRNIDAVWIYTIISQDLS---VVDDLIAKDTK 107
S + + D D R + + +L+ + A+ +
Sbjct: 97 ASEIAAQRGMYGTAATTMVGLARDT-GDPRLARRGLEFQLAGGNLAGALDAARVWARLSP 155
Query: 108 GYFDIAIVYALKKYFSGQLEESSKELSKI--KDKDNTRGIVPYLHLLI------------ 153
+ + +GQ + ++ L +D I L +L
Sbjct: 156 NDIEASSTELALAAANGQTKGLAQALRNRIDSSRDKPAAIGQALAVLSRLNDRRLALRIL 215
Query: 154 ------------GRAMMPFSSQQAVHFFDYVRLTSPGTFL----EEIALRNLLEITQNEV 197
+ A ++ S E A + LLE
Sbjct: 216 DESLSDNVRKLPAAHLALADVASAAGDYERATQESRAALAADPKSEAAAQRLLEYGSKVD 275
Query: 198 GERAFGYIRAYVTQFHHSIYKDHFISVLLRFFLHGQLKLPDEDIVFTISFFSLEEQR--- 254
+RA RAY+ + + + +R L GQL D ++ +R
Sbjct: 276 PQRAQTEARAYINRHPN--------ARKVRLMLAGQLADS-GDYNGALTELQAMSRRSPE 326
Query: 255 --AIYLKIAQNSVISGKRKIGF--------LAIKQLKRIIDRLDYKDLATIQLYENILNI 304
+ AQ + +G+ + + ++ + + A + + I
Sbjct: 327 DFDLLFMQAQLAYKAGQLQQAKTLLQQYLDVQQQRQRATVPGATDAGAAAADAHVLLSRI 386
Query: 305 PFV--DIMSLQRSTCNIPYYSLMEQDRYLKKASEIIMSEIGKSLIDIDFEHIQKDLLLDK 362
+ I +L + A + +L ID Q D
Sbjct: 387 AEDQGNYDEAINELGRIDDPTLRYSVHMRQAALRAKSGRVNDALAMIDAAGPQDDEERTL 446
Query: 363 KEPRHTNVSMGIESFIKKNRSQIESIDVLL 392
+ + + + S +E+ D L
Sbjct: 447 GVLTKAQILRDAD-RVPQAVSTLEAADQAL 475
>gi|218665177|ref|YP_002427136.1| TPR domain protein [Acidithiobacillus ferrooxidans ATCC 23270]
gi|218517390|gb|ACK77976.1| TPR domain protein [Acidithiobacillus ferrooxidans ATCC 23270]
Length = 603
Score = 38.5 bits (88), Expect = 2.0, Method: Composition-based stats.
Identities = 30/158 (18%), Positives = 56/158 (35%), Gaps = 16/158 (10%)
Query: 148 YLHLLIGRAMMPFSSQQAVHFFDYVRLTSPGTFLEEIALRNLL-EITQNEVGERAFGYIR 206
Y L+ A + Q A+ + +P E LR I + + A R
Sbjct: 86 YYLLVAEFATVQRQPQLAIPAWQKAAKLAP----EPNVLRRATQAIARFGDFQDALQLAR 141
Query: 207 AYVTQFHHSIYKDHFISVLLRFFLHGQLKLPDEDIVFTISFFSLEEQRAIYLKIAQNSVI 266
+ S D F + L GQ + + + T++ F + + + L+ A+ V
Sbjct: 142 RWRQAAPGSAEADQFEAAL--LLTTGQDEQALQLLQATLARFPDDPK--VTLQFAELLVT 197
Query: 267 SGKRKIGFLAIKQLKRIIDRLDYKDLATIQLYENILNI 304
G+ + +R++ L KD + Y + I
Sbjct: 198 HGR-------SGEARRLLSALADKDPKSAAAYYALGRI 228
>gi|121635525|ref|YP_975770.1| hypothetical protein NMC1831 [Neisseria meningitidis FAM18]
gi|120867231|emb|CAM11000.1| putative periplasmic hypothetical protein [Neisseria meningitidis
FAM18]
gi|325202841|gb|ADY98295.1| conserved hypothetical protein [Neisseria meningitidis M01-240149]
Length = 389
Score = 38.5 bits (88), Expect = 2.0, Method: Composition-based stats.
Identities = 27/171 (15%), Positives = 48/171 (28%), Gaps = 10/171 (5%)
Query: 115 VYALKKYFSGQLEESSKELSKIKDKDNTRGIVPYLHLLIGRAMMPFSSQQAVHFFDYVRL 174
+ AL SG+ E+ + + L+L +G+ L
Sbjct: 48 LDALVDRNSGRAARELAEVVDGRPQSYD------LNLTLGKLYRQRGENDKAINIHRTML 101
Query: 175 TSPGTFLEEIALRNLLEITQNEVGERAFGYIRAYVTQFHHSIYKDHFISVLLRFFLHGQL 234
SP T E+ A R L E+ QN LL + +
Sbjct: 102 DSPDTVGEKRA-RVLFELAQNYQSAGLVDRAEQIFLGLQDGEMAREARQHLLNIYQQDRD 160
Query: 235 KLPDEDIVFTISFFSLEEQRAI---YLKIAQNSVISGKRKIGFLAIKQLKR 282
+ +S Q I Y ++AQ ++ + + +
Sbjct: 161 WEKAVETARLLSHDDQTYQFEIAQFYCELAQAALFKSNFDVARFNVGKALE 211
>gi|312436382|gb|ADQ83191.1| internal virion protein D [Yersinia phage Yep-phi]
Length = 1315
Score = 38.5 bits (88), Expect = 2.1, Method: Composition-based stats.
Identities = 14/92 (15%), Positives = 29/92 (31%), Gaps = 8/92 (8%)
Query: 4 KYLICTMMVAMDVFFSFATDQDLVRTIVPYQCVRSLQRALDEAMRGDISLQKKI--PDIV 61
K + AMD++ A + P++ D G + ++
Sbjct: 1058 KRKLANDPRAMDLWR-LADKVADETMLRPHKV-----SLQDSHAFGATAKLVLQFKSFVI 1111
Query: 62 KETGVQLRATHMDVFVDNRNIDAVWIYTIISQ 93
K + + + F ++R +D Y I
Sbjct: 1112 KSMNSKFIRSGNEAFKNHRAMDMALTYAISGG 1143
>gi|258543929|ref|ZP_05704163.1| tetratricopeptide repeat protein [Cardiobacterium hominis ATCC
15826]
gi|258520868|gb|EEV89727.1| tetratricopeptide repeat protein [Cardiobacterium hominis ATCC
15826]
Length = 474
Score = 38.5 bits (88), Expect = 2.1, Method: Composition-based stats.
Identities = 19/157 (12%), Positives = 45/157 (28%), Gaps = 7/157 (4%)
Query: 226 LRFFLHGQLKLPDEDIVFTISFFSLEEQRAIYLKI--AQNSVISGKRKIGFLAIKQLKRI 283
L + ++ ++Q + L+ A + G AI +L+ +
Sbjct: 76 LDSAIINGDADAVAMLLPIYRKLPADKQDKMLLRFGEAMKARADGDLSR---AIARLREM 132
Query: 284 IDRLDYKDLATIQLYENILNIPFVDIMSLQRSTCNIPYYSLMEQDRYLKKASEIIMSEIG 343
I + L + + + + + L E R + + + E
Sbjct: 133 IAEDPSLQPVRLHL--AMALLADHQDEAARTQLEKLRSDELPEDIRNIVSQALDTLRERQ 190
Query: 344 KSLIDIDFEHIQKDLLLDKKEPRHTNVSMGIESFIKK 380
+ + + D R V G +F ++
Sbjct: 191 SWTFNASGYYRHDKNINDAPRQRERQVGNGKWTFPER 227
>gi|212527108|ref|XP_002143711.1| alpha-aminoadipate reductase Lys2, putative [Penicillium marneffei
ATCC 18224]
gi|210073109|gb|EEA27196.1| alpha-aminoadipate reductase Lys2, putative [Penicillium marneffei
ATCC 18224]
Length = 1172
Score = 38.5 bits (88), Expect = 2.1, Method: Composition-based stats.
Identities = 24/198 (12%), Positives = 51/198 (25%), Gaps = 31/198 (15%)
Query: 190 LEITQNEVGERAFGYIRAY-----VTQFHHSIYKDH------FISVLLRFFLHGQLKLPD 238
+E E ER F Y + Y + + H + F + + L
Sbjct: 38 VETASAEGPERRFTYKQIYEASNTLAHYLHDAGITNDDVVMIFAHRSVDLVVAIMGTLSS 97
Query: 239 EDIVFTISFFSLEEQRAIYLKIAQ-NSVIS-GKRKIGFLAIKQLKRIIDRLDYKDLATIQ 296
+ ++ IYL++AQ ++I+ G+ A + + + +
Sbjct: 98 AATFTVLDPAYPPARQKIYLEVAQPRALINIGR------ATDEAGVLAPIVRSYIDDELN 151
Query: 297 LYENILNIPFVDIMSLQRSTCNIPYYSLMEQDRYLKKASEIIMSEIGKSLIDIDFEHIQK 356
L +P + + +L + K +
Sbjct: 152 L---KAEVPSLRLG---------DDGTLSGGEIDGKDVFYEARQKASAPPPTQVGPDSNP 199
Query: 357 DLLLDKKEPRHTNVSMGI 374
L +G
Sbjct: 200 TLSFTSGSEGRPKGVLGR 217
>gi|241759375|ref|ZP_04757480.1| N-acetylglucosaminyl transferase [Neisseria flavescens SK114]
gi|261381361|ref|ZP_05985934.1| tetratricopeptide repeat protein [Neisseria subflava NJ9703]
gi|241320320|gb|EER56639.1| N-acetylglucosaminyl transferase [Neisseria flavescens SK114]
gi|284795678|gb|EFC51025.1| tetratricopeptide repeat protein [Neisseria subflava NJ9703]
Length = 389
Score = 38.5 bits (88), Expect = 2.1, Method: Composition-based stats.
Identities = 34/230 (14%), Positives = 62/230 (26%), Gaps = 12/230 (5%)
Query: 115 VYALKKYFSGQLEESSKELSKIKDKDNTRGIVPYLHLLIGRAMMPFSSQQAVHFFDYVRL 174
+ AL SG+ E+ + + L+L +G+ L
Sbjct: 48 LDALVDRNSGRAARELAEVIDQQPQSYD------LNLTLGKLYRQRGENDKAINMHRALL 101
Query: 175 TSPGTFLEEIALRNLLEITQNEVGERAFGYIRAYVTQFHHSIYKDHFISVLLRFFLHGQL 234
SP T E+ A R L E+ QN LL + +
Sbjct: 102 DSPDTVNEKRA-RVLFELAQNYQSAGLVDRAEQIFLGLQEGDMAREARQHLLSIYQQDRD 160
Query: 235 KLPDEDIVFTISFFSLEEQRAI---YLKIAQNSVISGKRKIGFLAIKQLKRIIDRLDYKD 291
++ +S Q I Y +IAQ ++ I + + +
Sbjct: 161 WEKAIEMAQLLSHDEQTYQFEIAQFYCEIAQAALFKSNFDAARYNIGKALEANKKCTRAN 220
Query: 292 LATIQLYENILNIPFVDIMSLQRSTCNIPYYSLMEQDRYLKKASEIIMSE 341
+ + N P + + + L L +A +
Sbjct: 221 IILGDIEYRQGNFPA--AVEAYSAIEQQNHAYLSMVGEKLYEAYAAQGKQ 268
>gi|225012330|ref|ZP_03702766.1| Tetratricopeptide TPR_2 repeat protein [Flavobacteria bacterium
MS024-2A]
gi|225003307|gb|EEG41281.1| Tetratricopeptide TPR_2 repeat protein [Flavobacteria bacterium
MS024-2A]
Length = 463
Score = 38.5 bits (88), Expect = 2.1, Method: Composition-based stats.
Identities = 15/101 (14%), Positives = 23/101 (22%), Gaps = 2/101 (1%)
Query: 242 VFTISFFSLEEQRAIYLKIAQNSVISGKRKIGFLAIKQLKRIIDRLDYKDLATIQLYENI 301
+ I LKIA +G++ + + L L LY +
Sbjct: 326 ESITLEEDNYRKAKILLKIANKFKAAGRKSSARSYANKALSLQPSLGRAYLLIANLYADS 385
Query: 302 LNIPFVDI--MSLQRSTCNIPYYSLMEQDRYLKKASEIIMS 340
N D LKK +
Sbjct: 386 ANDCGDTQFNKRAVYWLAASVARKAGNVDNSLKKVANQTAD 426
>gi|66473259|gb|AAY46271.1| polyprotein [Aichi virus]
Length = 2433
Score = 38.5 bits (88), Expect = 2.2, Method: Composition-based stats.
Identities = 11/101 (10%), Positives = 24/101 (23%), Gaps = 5/101 (4%)
Query: 277 IKQLKRIIDRLDYKDLATIQLYENILNIPFVDIM-----SLQRSTCNIPYYSLMEQDRYL 331
+ R N + R+ ++ D
Sbjct: 207 SASADSLPGRSGGASSEKTHTVSGSSNKVGSRFSKWWEPAAARALERATDSAIDGIDAAG 266
Query: 332 KKASEIIMSEIGKSLIDIDFEHIQKDLLLDKKEPRHTNVSM 372
K AS+ I ++ + H Q L+ ++ +
Sbjct: 267 KAASKAITRKLDRPAAPSSTTHPQPSLIALNPSATQSDNAS 307
>gi|325128925|gb|EGC51779.1| hypothetical protein NMXN1568_0301 [Neisseria meningitidis N1568]
gi|325130918|gb|EGC53647.1| hypothetical protein NMBOX9930304_0322 [Neisseria meningitidis
OX99.30304]
gi|325136914|gb|EGC59511.1| hypothetical protein NMBM0579_0312 [Neisseria meningitidis M0579]
gi|325205416|gb|ADZ00869.1| conserved hypothetical protein [Neisseria meningitidis M04-240196]
Length = 389
Score = 38.5 bits (88), Expect = 2.2, Method: Composition-based stats.
Identities = 27/171 (15%), Positives = 48/171 (28%), Gaps = 10/171 (5%)
Query: 115 VYALKKYFSGQLEESSKELSKIKDKDNTRGIVPYLHLLIGRAMMPFSSQQAVHFFDYVRL 174
+ AL SG+ E+ + + L+L +G+ L
Sbjct: 48 LDALVDRNSGRAARELAEVIDQQPQSYD------LNLTLGKLYRQRGENDKAINIHRTML 101
Query: 175 TSPGTFLEEIALRNLLEITQNEVGERAFGYIRAYVTQFHHSIYKDHFISVLLRFFLHGQL 234
SP T E+ A R L E+ QN LL + +
Sbjct: 102 DSPDTVGEKRA-RVLFELAQNYQSAGLVDRAEQIFLGLQDGKMAREARQHLLNIYQQDRD 160
Query: 235 KLPDEDIVFTISFFSLEEQRAI---YLKIAQNSVISGKRKIGFLAIKQLKR 282
+ +S Q I Y ++AQ ++ + + +
Sbjct: 161 WEKAVETARLLSHDDQTYQFEIAQFYCELAQAALFKSNFDVARFNVGKALE 211
>gi|225077206|ref|ZP_03720405.1| hypothetical protein NEIFLAOT_02261 [Neisseria flavescens
NRL30031/H210]
gi|224951458|gb|EEG32667.1| hypothetical protein NEIFLAOT_02261 [Neisseria flavescens
NRL30031/H210]
Length = 402
Score = 38.1 bits (87), Expect = 2.2, Method: Composition-based stats.
Identities = 34/230 (14%), Positives = 62/230 (26%), Gaps = 12/230 (5%)
Query: 115 VYALKKYFSGQLEESSKELSKIKDKDNTRGIVPYLHLLIGRAMMPFSSQQAVHFFDYVRL 174
+ AL SG+ E+ + + L+L +G+ L
Sbjct: 61 LDALVDRNSGRAARELAEVIDQQPQSYD------LNLTLGKLYRQRGENDKAINMHRALL 114
Query: 175 TSPGTFLEEIALRNLLEITQNEVGERAFGYIRAYVTQFHHSIYKDHFISVLLRFFLHGQL 234
SP T E+ A R L E+ QN LL + +
Sbjct: 115 DSPDTVNEKRA-RVLFELAQNYQSAGLVDRAEQIFLGLQEGDMAREARQHLLSIYQQDRD 173
Query: 235 KLPDEDIVFTISFFSLEEQRAI---YLKIAQNSVISGKRKIGFLAIKQLKRIIDRLDYKD 291
++ +S Q I Y +IAQ ++ I + + +
Sbjct: 174 WEKAIEMAQLLSHDEQTYQFEIAQFYCEIAQAALFKSNFDTARYNIGKALEANKKCTRAN 233
Query: 292 LATIQLYENILNIPFVDIMSLQRSTCNIPYYSLMEQDRYLKKASEIIMSE 341
+ + N P + + + L L +A +
Sbjct: 234 IILGDIEYRQGNFPA--AVEAYSAIEQQNHAYLSMVGEKLYEAYAAQGKQ 281
>gi|319637623|ref|ZP_07992389.1| hypothetical protein HMPREF0604_00012 [Neisseria mucosa C102]
gi|317400778|gb|EFV81433.1| hypothetical protein HMPREF0604_00012 [Neisseria mucosa C102]
Length = 389
Score = 38.1 bits (87), Expect = 2.2, Method: Composition-based stats.
Identities = 34/230 (14%), Positives = 62/230 (26%), Gaps = 12/230 (5%)
Query: 115 VYALKKYFSGQLEESSKELSKIKDKDNTRGIVPYLHLLIGRAMMPFSSQQAVHFFDYVRL 174
+ AL SG+ E+ + + L+L +G+ L
Sbjct: 48 LDALVDRNSGRAARELAEVIDQQPQSYD------LNLTLGKLYRQRGENDKAINMHRALL 101
Query: 175 TSPGTFLEEIALRNLLEITQNEVGERAFGYIRAYVTQFHHSIYKDHFISVLLRFFLHGQL 234
SP T E+ A R L E+ QN LL + +
Sbjct: 102 DSPDTVNEKRA-RVLFELAQNYQSAGLVDRAEQIFLGLQEGDMAREARQHLLSIYQQDRD 160
Query: 235 KLPDEDIVFTISFFSLEEQRAI---YLKIAQNSVISGKRKIGFLAIKQLKRIIDRLDYKD 291
++ +S Q I Y +IAQ ++ I + + +
Sbjct: 161 WEKAIEMAQLLSHDEQTYQFEIAQFYCEIAQAALFKSNFDTARYNIGKALEANKKCTRAN 220
Query: 292 LATIQLYENILNIPFVDIMSLQRSTCNIPYYSLMEQDRYLKKASEIIMSE 341
+ + N P + + + L L +A +
Sbjct: 221 IILGDIEYRQGNFPA--AVEAYSAIEQQNHAYLSMVGEKLYEAYAAQGKQ 268
>gi|308388548|gb|ADO30868.1| hypothetical protein NMBB_0379 [Neisseria meningitidis alpha710]
Length = 402
Score = 38.1 bits (87), Expect = 2.2, Method: Composition-based stats.
Identities = 27/171 (15%), Positives = 48/171 (28%), Gaps = 10/171 (5%)
Query: 115 VYALKKYFSGQLEESSKELSKIKDKDNTRGIVPYLHLLIGRAMMPFSSQQAVHFFDYVRL 174
+ AL SG+ E+ + + L+L +G+ L
Sbjct: 61 LDALVDRNSGRAARELAEVIDQQPQSYD------LNLTLGKLYRQRGENDKAINIHRTML 114
Query: 175 TSPGTFLEEIALRNLLEITQNEVGERAFGYIRAYVTQFHHSIYKDHFISVLLRFFLHGQL 234
SP T E+ A R L E+ QN LL + +
Sbjct: 115 DSPDTVGEKRA-RVLFELAQNYQSAGLVDRAEQIFLGLQDGKMAREARQHLLNIYQQDRD 173
Query: 235 KLPDEDIVFTISFFSLEEQRAI---YLKIAQNSVISGKRKIGFLAIKQLKR 282
+ +S Q I Y ++AQ ++ + + +
Sbjct: 174 WEKAVETARLLSHDDQTYQFEIAQFYCELAQAALFKSNFDVARFNVGKALE 224
>gi|300715086|ref|YP_003739889.1| lipoprotein [Erwinia billingiae Eb661]
gi|299060922|emb|CAX58029.1| lipoprotein [Erwinia billingiae Eb661]
Length = 678
Score = 38.1 bits (87), Expect = 2.3, Method: Composition-based stats.
Identities = 15/112 (13%), Positives = 44/112 (39%), Gaps = 1/112 (0%)
Query: 276 AIKQLKRIIDRLDYKDLATIQLYENILNIPFVDIMSLQRSTCNIPYYSLMEQDRYLKKAS 335
A QL + L+ L + + + D+ + +L ++ + +
Sbjct: 68 ANDQLSSLPQTLNDTQRQEALLLQAQVKLTQQDVNGAAGLLKQVDVSALSKEQQA-RYYQ 126
Query: 336 EIIMSEIGKSLIDIDFEHIQKDLLLDKKEPRHTNVSMGIESFIKKNRSQIES 387
I + G+ +D+ +I ++ LL + N+ ++ ++ + +Q+ +
Sbjct: 127 LQIAANQGRPSLDVLRAYIAQEPLLTNPADKQKNIDATWQTLVQMSPAQVSN 178
>gi|325203452|gb|ADY98905.1| conserved hypothetical protein [Neisseria meningitidis M01-240355]
Length = 389
Score = 38.1 bits (87), Expect = 2.4, Method: Composition-based stats.
Identities = 27/171 (15%), Positives = 48/171 (28%), Gaps = 10/171 (5%)
Query: 115 VYALKKYFSGQLEESSKELSKIKDKDNTRGIVPYLHLLIGRAMMPFSSQQAVHFFDYVRL 174
+ AL SG+ E+ + + L+L +G+ L
Sbjct: 48 LDALVDRNSGRAARELAEVIDQQPQSYD------LNLTLGKLYRQRGENDKAINIHRTML 101
Query: 175 TSPGTFLEEIALRNLLEITQNEVGERAFGYIRAYVTQFHHSIYKDHFISVLLRFFLHGQL 234
SP T E+ A R L E+ QN LL + +
Sbjct: 102 DSPDTVGEKRA-RVLFELAQNYQSAGLVDRAEQIFLGLQDGKMAREARQHLLNIYQQDRD 160
Query: 235 KLPDEDIVFTISFFSLEEQRAI---YLKIAQNSVISGKRKIGFLAIKQLKR 282
+ +S Q I Y ++AQ ++ + + +
Sbjct: 161 WEKAVETARLLSHDDQTYQFEIAQFYCELAQAALFKSNFDVARFNVGKALE 211
>gi|159036016|ref|YP_001535269.1| LuxR family transcriptional regulator [Salinispora arenicola
CNS-205]
gi|157914851|gb|ABV96278.1| transcriptional regulator, LuxR family [Salinispora arenicola
CNS-205]
Length = 975
Score = 38.1 bits (87), Expect = 2.5, Method: Composition-based stats.
Identities = 28/245 (11%), Positives = 69/245 (28%), Gaps = 19/245 (7%)
Query: 98 VDDLIAKDTKGYFDIAIVYALKKYFSGQLEESSKELSKIKDKDNTRGIVPYLHLLIGRAM 157
+ L+ D G A Y L+++ +D + L +
Sbjct: 323 LLGLLQNDVAGRLVAPDEQAADWYAFHHQLSREAVLAQLD-RDEHARLAGALATAVEAIH 381
Query: 158 MPFS----SQQAVHFFDYVRLTSPGTFLEEIALRNLLEITQNEVGERAFGYIRAYVTQFH 213
A D + GT E R L + Y+
Sbjct: 382 PGLPREWCEAAARLRVDAGDRATAGTLFTEAG-RRALALGAANSAVAVLDRALEYLPHDD 440
Query: 214 HSIYKDHFISVLLRFFLHGQLKLPDEDIVFT--ISFFSLEEQRAIYLKIAQNSVISGKRK 271
+ +L G ++ + + A++ ++A + I+G+ +
Sbjct: 441 VATRAGTLELLLQALAEAGLVERALASVSELDQAGGLGPRRRAALHTRLAWAATIAGRTE 500
Query: 272 IGFLAIKQLKRIIDRLDYKDLATIQLYENILNIPFVDIMSLQRSTCNIPYYSLMEQDRYL 331
G ++ + ++ + ++ +D+++ L +R
Sbjct: 501 DGLAQVETARALLGSEGSAE-----------DLAPIDVVAAHLLLDAAGPDQLAAAERLA 549
Query: 332 KKASE 336
++A+E
Sbjct: 550 RQAAE 554
>gi|115487572|ref|NP_001066273.1| Os12g0170700 [Oryza sativa Japonica Group]
gi|113648780|dbj|BAF29292.1| Os12g0170700 [Oryza sativa Japonica Group]
Length = 506
Score = 38.1 bits (87), Expect = 2.6, Method: Composition-based stats.
Identities = 23/146 (15%), Positives = 48/146 (32%), Gaps = 5/146 (3%)
Query: 240 DIVFTISFFSLEEQRAIYLKIAQNSVI--SGKRKIGFLAIKQLKRIIDR--LDYKDLATI 295
D+V ++ E+ + L AQ +V+ G + A K+ I L
Sbjct: 322 DLVPILAHQYFSEKLPVTLHGAQAAVLFCMGLQDKDIGATKEELGIEREQVLSNFIKTMK 381
Query: 296 QLYENILNIPFVDIMSLQRSTCNIPYYSLMEQDRYLKKASEIIMSEIGKSLIDIDFEHIQ 355
+LY + NI +I + I L D L +A+ + + +++ + D +
Sbjct: 382 KLYGYLHNIAGKEIEATLPRLKEIDTAPLKSLDEDLDEAAREVKEQ-RRAIDEDDVDPKF 440
Query: 356 KDLLLDKKEPRHTNVSMGIESFIKKN 381
+ ++
Sbjct: 441 LQKYAIDADDDEIEKALNGGKISASG 466
>gi|146303616|ref|YP_001190932.1| protein kinase [Metallosphaera sedula DSM 5348]
gi|145701866|gb|ABP95008.1| protein kinase [Metallosphaera sedula DSM 5348]
Length = 650
Score = 37.7 bits (86), Expect = 2.9, Method: Composition-based stats.
Identities = 17/100 (17%), Positives = 36/100 (36%), Gaps = 10/100 (10%)
Query: 82 IDAVWIYTIISQDLSVVDDLIAKDTKGYFDIAIVYALKKYFS-GQLEESSKELSKIKDKD 140
DA+ + ++ + A + +DI V Y + ++EE+ + ++
Sbjct: 205 ADALITEFEKQGNPKLL--IEALNVLPTYDIPAVKLGLHYLNKNKVEEAVNMFEEALRRN 262
Query: 141 NTRGIVPYLHLLIGRAMMPFSSQQAVHFFDYV---RLTSP 177
L LL + ++A+ D R T+P
Sbjct: 263 RN---FQNLVLLGSALL-RKDPKRALEVLDEAQKIRRTAP 298
>gi|194225941|ref|XP_001499447.2| PREDICTED: laminin, gamma 3 [Equus caballus]
Length = 1472
Score = 37.7 bits (86), Expect = 3.2, Method: Composition-based stats.
Identities = 12/131 (9%), Positives = 34/131 (25%), Gaps = 14/131 (10%)
Query: 261 AQNSVISGKRKIGFLAIKQLKRIIDRLDYKDLATIQLYENILNIPFVDIMSLQRSTCNIP 320
AQ ++++ L Y+ + Q+
Sbjct: 1074 AQRALLASNTSYVLLWS---LLEGKVALEAQQELEDRYQA--------VQEAQKELGAAV 1122
Query: 321 YYSLMEQDRYLKKASEIIMSEIGKS---LIDIDFEHIQKDLLLDKKEPRHTNVSMGIESF 377
+L E +R L +++ + + + + LD + E
Sbjct: 1123 AEALPEAERVLAAVQQVVTDTGLRPASLPVPVALPQAARAGDLDPRLQALEKTVASRERV 1182
Query: 378 IKKNRSQIESI 388
+ + +++
Sbjct: 1183 VTEAARALQAT 1193
>gi|157273492|gb|ABV27391.1| aspartate aminotransferase [Candidatus Chloracidobacterium
thermophilum]
Length = 405
Score = 37.7 bits (86), Expect = 3.2, Method: Composition-based stats.
Identities = 15/91 (16%), Positives = 32/91 (35%), Gaps = 5/91 (5%)
Query: 125 QLEESSKELSKIKDKDNTRGIVPYLHLLIGRAMMPFSSQQAVHFFDYVRLTS-PGTFL-- 181
+ + L+++ + ++ SS+ A+ D R+ + PGT
Sbjct: 313 RRDRLIAGLAELGLPVKPVPNGAFYVFPDVSSLGGTSSEIAMRLLDEARVATVPGTAFGC 372
Query: 182 -EEIALRNLLEITQNEVGERAFGYIRAYVTQ 211
E LR ++ ER + Y+ +
Sbjct: 373 AGEGHLRLSYSLSLEA-IERGLAALGEYLRR 402
>gi|167521207|ref|XP_001744942.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163776556|gb|EDQ90175.1| predicted protein [Monosiga brevicollis MX1]
Length = 869
Score = 37.3 bits (85), Expect = 3.8, Method: Composition-based stats.
Identities = 26/163 (15%), Positives = 59/163 (36%), Gaps = 10/163 (6%)
Query: 166 VHFFDYVRLTSPGTFLEEIALRNLLEITQNEVGERAFGYIRAYVTQFHHSIYKDHFISVL 225
+ R+ P T + AL +E+ + + R ++ + +F VL
Sbjct: 461 IKHLRTARVAMPLTIDQYRAL--TVEVIIDRLIARGVHWLAHEICKFLKLENMRAMNKVL 518
Query: 226 L--RFFLHGQLKLPDEDIVFTISFFSLEEQRAIYLKIAQNSVISGKRKIG-FLAIKQLKR 282
+ + + DE + + + +++IAQ + SG+R++ L ++
Sbjct: 519 VHWARTVISKHDGSDEQVADILIRKLAHKTGIRFVEIAQAAAASGRRELAVRLVKQEA-- 576
Query: 283 IIDRLDYKDLATIQLYENILN--IPFVDIMSLQRSTCNIPYYS 323
RL L + YE+ L + D + + ++
Sbjct: 577 -SARLQVPALLEFREYEDALRRALLSGDPDMITVALEHLKKAQ 618
>gi|116622586|ref|YP_824742.1| TPR repeat-containing protein [Candidatus Solibacter usitatus
Ellin6076]
gi|116225748|gb|ABJ84457.1| Tetratricopeptide TPR_2 repeat protein [Candidatus Solibacter
usitatus Ellin6076]
Length = 907
Score = 37.3 bits (85), Expect = 4.1, Method: Composition-based stats.
Identities = 9/108 (8%), Positives = 26/108 (24%), Gaps = 10/108 (9%)
Query: 260 IAQNSVISGKRKIGFLAIKQLKRIIDRLDYKDLATIQLYENILNIPFVDIMSLQRSTCNI 319
+A+ + G+ + + + L ++ + D S
Sbjct: 743 VARALIQEGETDAAKPFLAKALELGPGLG-----RAWFFQAAVQKADGDYDGALHSLER- 796
Query: 320 PYYSLMEQDRYLKKASEIIMSEIGKSLIDIDFEHIQKDLLLDKKEPRH 367
+ +DR + I + + + + E
Sbjct: 797 -ARAQYPRDRVVLN---QIARILFLKRDYAGAVAVLRQVCDVDPEDVQ 840
>gi|198284469|ref|YP_002220790.1| tetratricopeptide repeat-containing protein [Acidithiobacillus
ferrooxidans ATCC 53993]
gi|198248990|gb|ACH84583.1| Tetratricopeptide TPR_2 repeat protein [Acidithiobacillus
ferrooxidans ATCC 53993]
Length = 553
Score = 37.3 bits (85), Expect = 4.2, Method: Composition-based stats.
Identities = 30/158 (18%), Positives = 56/158 (35%), Gaps = 16/158 (10%)
Query: 148 YLHLLIGRAMMPFSSQQAVHFFDYVRLTSPGTFLEEIALRNLL-EITQNEVGERAFGYIR 206
Y L+ A + Q A+ + +P E LR I + + A R
Sbjct: 36 YYLLVAEFATVQRQPQLAIPAWQKAAKLAP----EPNVLRRATQAIARFGDFQDALQLAR 91
Query: 207 AYVTQFHHSIYKDHFISVLLRFFLHGQLKLPDEDIVFTISFFSLEEQRAIYLKIAQNSVI 266
+ S D F + L GQ + + + T++ F + + + L+ A+ V
Sbjct: 92 RWRQAAPGSAEADQFEAAL--LLTTGQDEQALQLLQATLARFPDDPK--VTLQFAELLVT 147
Query: 267 SGKRKIGFLAIKQLKRIIDRLDYKDLATIQLYENILNI 304
G+ + +R++ L KD + Y + I
Sbjct: 148 HGR-------SGEARRLLSALADKDPKSAAAYYALGRI 178
>gi|302770521|ref|XP_002968679.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
gi|300163184|gb|EFJ29795.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
Length = 818
Score = 37.3 bits (85), Expect = 4.2, Method: Composition-based stats.
Identities = 40/252 (15%), Positives = 91/252 (36%), Gaps = 21/252 (8%)
Query: 91 ISQDLSVVDDLIAKDTKGYFDIAIV---YALKKYFS-GQLEESSKELSKIKDKDNTRGIV 146
LS V L A+ ++ + +V + Y G LEE+ + + K+K +V
Sbjct: 456 SLGRLSEVKALHAQISESELESNVVVTNTLINMYARCGSLEEAERLFAAAKEKT----VV 511
Query: 147 PYLHLLIG-RAMMPFSSQQAVHFFDYVRLTSPGTFLEEIALRNLLEITQ-NEVGERAFGY 204
+ ++ + +A+ F + L G +++ ++L + E+ + Y
Sbjct: 512 SWTAMVAAFSQYGRY--AEALDLFQEMDLE--GVKPDDVTYTSILFVCTHGGSLEQGWRY 567
Query: 205 IRAYVTQFHHSIYKDHFISVLLRFFLHGQLKLPDEDIVFTISFFSLEEQRAIYLKIAQNS 264
+ DHF + ++ ++++ ++ F +L +
Sbjct: 568 FTDMAELHALAPTADHFAA-MVDLLGRSGRLFDAKELLESMPFEPDPVAWMTFLTACR-- 624
Query: 265 VISGKRKIGFLAIKQLKRIIDRLDYKDLATIQLYENIL---NIPFVDIMSLQRSTCNIPY 321
I GK ++G A +++ + +A +Y + V +R +P
Sbjct: 625 -IHGKLELGEAAAERVYELDPSSTAPYIAMSNIYAAHGMWEKVASVRKKMEERGLKKLPG 683
Query: 322 YSLMEQDRYLKK 333
S +E D L +
Sbjct: 684 LSFIEVDGKLHE 695
>gi|242039377|ref|XP_002467083.1| hypothetical protein SORBIDRAFT_01g019330 [Sorghum bicolor]
gi|241920937|gb|EER94081.1| hypothetical protein SORBIDRAFT_01g019330 [Sorghum bicolor]
Length = 1165
Score = 37.3 bits (85), Expect = 4.3, Method: Composition-based stats.
Identities = 16/75 (21%), Positives = 29/75 (38%), Gaps = 2/75 (2%)
Query: 226 LRFFLHGQLKLPDEDIVFTISFFSLEEQRAIYLKIAQNSVISGKRKIGFLAIKQLKRIID 285
L+ + D+ F +S +EQ A+Y IA+ + + + L ++ R+
Sbjct: 479 LKAAADSAFEDTDDTEYFHVSVSKRDEQLALYALIARAAADTTIPFLAQLFSERFARLNQ 538
Query: 286 RLDYKDLATIQ--LY 298
R D LY
Sbjct: 539 RNGESDPTQTLEELY 553
>gi|315187458|gb|EFU21214.1| Tetratricopeptide TPR_1 repeat-containing protein [Spirochaeta
thermophila DSM 6578]
Length = 454
Score = 37.3 bits (85), Expect = 4.3, Method: Composition-based stats.
Identities = 28/262 (10%), Positives = 77/262 (29%), Gaps = 16/262 (6%)
Query: 61 VKETGVQLRATHMDVFVDNRNIDAVWIY---TIISQDLSVVDDLIAKDTKGYFD---IAI 114
+ ++A + + +Y +++ + + +++ + Y D
Sbjct: 47 LGRPEDAIKAFEEASARAPEDPETRLLYVNLLLMAGKETEAEAELSRLLEEYPDHVGALY 106
Query: 115 VYALKKYFSGQLEESSKELSKIKDKDNTRGIVPYLHLLIGRAMMPFSSQQAVHFFDYVRL 174
AL + G+ EE + L ++ D L + +A F V
Sbjct: 107 TLALLEGARGREEEHRRLLERVLALD-PHHTGARAAL-GELLLSKKQYARAEKEFTTVLE 164
Query: 175 TSPGTFLEEIALRNLLEITQNEVGERAFGYIRAYVTQFHHSIYKDHFISVLLRFFLHGQL 234
PG + + + E+A + + Q + + + + +
Sbjct: 165 EDPGDLV--ALVGLGNVYLRTRKAEKAAEVLTQAIRQAPDYPFA--YADRARAWQMLDEP 220
Query: 235 KLPDEDIVFTISFFSLEEQRAIYLKIAQNSVISGKRKIGFLAIKQLKRIIDRLDYKDLAT 294
+ ++DI I Y + A+ + G+ + + + +
Sbjct: 221 EKAEQDISRAI-ELDPGFSWHYYDR-ARILISEGQMDRALEDLSRAILLDPSNFLAYVYR 278
Query: 295 IQLYEN--ILNIPFVDIMSLQR 314
++Y+ ++ D
Sbjct: 279 ARIYDGKEMMKEACSDYARALE 300
>gi|18415518|ref|NP_567603.1| receptor-like protein kinase-related [Arabidopsis thaliana]
gi|18415520|ref|NP_567604.1| receptor-like protein kinase-related [Arabidopsis thaliana]
gi|18415522|ref|NP_567605.1| receptor-like protein kinase-related [Arabidopsis thaliana]
gi|18415525|ref|NP_567606.1| receptor-like protein kinase-related [Arabidopsis thaliana]
gi|18415527|ref|NP_567607.1| receptor-like protein kinase-related [Arabidopsis thaliana]
gi|18415529|ref|NP_567608.1| receptor-like protein kinase-related [Arabidopsis thaliana]
gi|18415531|ref|NP_567609.1| receptor-like protein kinase-related [Arabidopsis thaliana]
gi|18415533|ref|NP_567610.1| receptor-like protein kinase-related [Arabidopsis thaliana]
gi|18415535|ref|NP_567611.1| receptor-like protein kinase-related [Arabidopsis thaliana]
gi|18415537|ref|NP_567612.1| receptor-like protein kinase-related [Arabidopsis thaliana]
gi|18415540|ref|NP_567613.1| receptor-like protein kinase-related [Arabidopsis thaliana]
gi|18415542|ref|NP_567614.1| receptor-like protein kinase-related [Arabidopsis thaliana]
gi|5262176|emb|CAB45819.1| putative protein [Arabidopsis thaliana]
gi|5262177|emb|CAB45820.1| putative protein [Arabidopsis thaliana]
gi|5262178|emb|CAB45821.1| putative protein [Arabidopsis thaliana]
gi|5262179|emb|CAB45822.1| putative protein [Arabidopsis thaliana]
gi|5262180|emb|CAB45823.1| putative protein [Arabidopsis thaliana]
gi|5262181|emb|CAB45824.1| putative protein [Arabidopsis thaliana]
gi|5262182|emb|CAB45825.1| putative protein [Arabidopsis thaliana]
gi|5262183|emb|CAB45826.1| putative protein [Arabidopsis thaliana]
gi|5262184|emb|CAB45827.1| putative protein [Arabidopsis thaliana]
gi|5262185|emb|CAB45828.1| putative protein [Arabidopsis thaliana]
gi|5262186|emb|CAB45829.1| putative protein [Arabidopsis thaliana]
gi|5262187|emb|CAB45830.1| putative protein [Arabidopsis thaliana]
gi|7268849|emb|CAB79053.1| putative protein [Arabidopsis thaliana]
gi|7268850|emb|CAB79054.1| putative protein [Arabidopsis thaliana]
gi|7268851|emb|CAB79055.1| putative protein [Arabidopsis thaliana]
gi|7268852|emb|CAB79056.1| putative protein [Arabidopsis thaliana]
gi|7268853|emb|CAB79057.1| putative protein [Arabidopsis thaliana]
gi|7268854|emb|CAB79058.1| putative protein [Arabidopsis thaliana]
gi|7268855|emb|CAB79059.1| putative protein [Arabidopsis thaliana]
gi|7268856|emb|CAB79060.1| putative protein [Arabidopsis thaliana]
gi|7268857|emb|CAB79061.1| putative protein [Arabidopsis thaliana]
gi|7268858|emb|CAB79062.1| putative protein [Arabidopsis thaliana]
gi|7268859|emb|CAB79063.1| putative protein [Arabidopsis thaliana]
gi|7268860|emb|CAB79064.1| putative protein [Arabidopsis thaliana]
gi|332658939|gb|AEE84339.1| cysteine-rich repeat secretory protein 54 [Arabidopsis thaliana]
gi|332658940|gb|AEE84340.1| cysteine-rich repeat secretory protein 53 [Arabidopsis thaliana]
gi|332658949|gb|AEE84349.1| cysteine-rich repeat secretory protein 44 [Arabidopsis thaliana]
Length = 468
Score = 37.3 bits (85), Expect = 4.4, Method: Composition-based stats.
Identities = 16/165 (9%), Positives = 48/165 (29%), Gaps = 6/165 (3%)
Query: 222 ISVLLRFFLHGQLKLPDEDIVF-TISFFSLEEQRAI-YLKIAQNSVISGKRKIGFLAIKQ 279
+ ++K +++ +S +R + Y + + S + ++ + +
Sbjct: 305 ADLARSQDDAKEMKRKYDELAGRALSEMKRLRERRLEYAEFVRRSALDKMAELVQKRLDR 364
Query: 280 LKRIIDRLDYKDLATIQLYENILNIPFVDIMSLQRSTCNIPYYSLMEQDRYLKK--ASEI 337
+K ID + ++ + + + D L+ LM+ D ++ A
Sbjct: 365 IKAHIDDTKAAEPKFLEFNQMLRLVA--DAEELEAEVKAFGITDLMDGDFDVRTLFAELS 422
Query: 338 IMSEIGKSLIDIDFEHIQKDLLLDKKEPRHTNVSMGIESFIKKNR 382
+ + + + + I R
Sbjct: 423 PDNRNSVPPPTEGEDLADGRGECEGQAGERIVGQTEVRDEIADAR 467
>gi|163795702|ref|ZP_02189667.1| TPR repeat [alpha proteobacterium BAL199]
gi|159178998|gb|EDP63533.1| TPR repeat [alpha proteobacterium BAL199]
Length = 808
Score = 37.3 bits (85), Expect = 4.5, Method: Composition-based stats.
Identities = 27/237 (11%), Positives = 63/237 (26%), Gaps = 50/237 (21%)
Query: 186 LRNLLEITQNEVGERAFGYIRAYVTQFHHSIYKDHFISVLLRFFLHGQLKLPDEDIVFTI 245
L + Q+ A +R + + S L GQ+ + +++ +
Sbjct: 13 LSRAQLLVQSGNLTGARHCVRRVLAEDPAST---------SALTLAGQISVRADEVRDAV 63
Query: 246 SFFSLEEQRA------IYLKIAQNSVISGKRKIGFLAIKQLKRIIDRLDYKDLATIQLYE 299
+FS L +A+ ++G + + +
Sbjct: 64 RYFSRASHAEHHSDPRALLNLARAEELAGHARAALATTSRAATLFPEDP---RPRAL--A 118
Query: 300 NILNIPFVDIMSLQRSTCNIPYYSLME--------------------QDRY---LKKASE 336
+L++ + L +DR L +A+
Sbjct: 119 ALLHLSTGQPAQALEVLRDGDAGRLDPDMAYKIGNRLSALAPNQPSVRDRAMVFLLRAAS 178
Query: 337 IIMSEIGKSLIDIDFEHIQKDLLLDKKEPRHTNVSMGIESFIKKNRSQIESIDVLLA 393
+ +L D+ +D + + + K+ I+SI+ L
Sbjct: 179 NPGRFLEPALQDLLAIAGPED-------RHRYDAARRLLVLNPKSAEAIDSIEGDLG 228
>gi|56695967|ref|YP_166321.1| putative FAD-binding dehydrogenase [Ruegeria pomeroyi DSS-3]
gi|56677704|gb|AAV94370.1| conserved hypothetical protein [Ruegeria pomeroyi DSS-3]
Length = 553
Score = 37.3 bits (85), Expect = 4.6, Method: Composition-based stats.
Identities = 15/113 (13%), Positives = 29/113 (25%), Gaps = 19/113 (16%)
Query: 39 LQRALDEAMRG--------DISLQKKIPDIVKETGVQLRATHMDVFVDNRN--------I 82
L+R D G +S ++ A N +
Sbjct: 156 LRRVQDHVAAGRIEMRFRHQVSHIIMQNGAATGVSGEVLAEDSAQRGQRTNRDEIGEFEV 215
Query: 83 DAVWIYTIISQ---DLSVVDDLIAKDTKGYFDIAIVYALKKYFSGQLEESSKE 132
A I + +V +D G +V + + G++ S+
Sbjct: 216 YAPSILVTSGGIGGNFDLVRKAWPRDRLGAPPPNMVAGVPFHVDGRMIAISER 268
>gi|302816499|ref|XP_002989928.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
gi|300142239|gb|EFJ08941.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
Length = 818
Score = 37.3 bits (85), Expect = 4.6, Method: Composition-based stats.
Identities = 40/252 (15%), Positives = 91/252 (36%), Gaps = 21/252 (8%)
Query: 91 ISQDLSVVDDLIAKDTKGYFDIAIV---YALKKYFS-GQLEESSKELSKIKDKDNTRGIV 146
LS V L A+ ++ + +V + Y G LEE+ + + K+K +V
Sbjct: 456 SLGRLSEVKALHAQISESELESNVVVTNTLINMYARCGSLEEAERLFAAAKEKT----VV 511
Query: 147 PYLHLLIG-RAMMPFSSQQAVHFFDYVRLTSPGTFLEEIALRNLLEITQ-NEVGERAFGY 204
+ ++ + +A+ F + L G +++ ++L + E+ + Y
Sbjct: 512 SWTAMVAAFSQYGRY--AEALDLFQEMDLE--GVKPDDVTYTSILFVCTHGGSLEQGWRY 567
Query: 205 IRAYVTQFHHSIYKDHFISVLLRFFLHGQLKLPDEDIVFTISFFSLEEQRAIYLKIAQNS 264
+ DHF + ++ ++++ ++ F +L +
Sbjct: 568 FTDMAELHGLAPTADHFAA-MVDLLGRSGRLFDAKELLESMPFEPDPVAWMTFLTACR-- 624
Query: 265 VISGKRKIGFLAIKQLKRIIDRLDYKDLATIQLYENIL---NIPFVDIMSLQRSTCNIPY 321
I GK ++G A +++ + +A +Y + V +R +P
Sbjct: 625 -IHGKLELGEAAAERVYELDPSSTAPYIAMSNIYAAHGMWEKVASVRKKMEERGLKKLPG 683
Query: 322 YSLMEQDRYLKK 333
S +E D L +
Sbjct: 684 LSFIEVDGKLHE 695
>gi|194100294|ref|YP_002003492.1| gp16 [Enterobacteria phage BA14]
gi|193201289|gb|ACF15769.1| gp16 [Enterobacteria phage BA14]
Length = 1315
Score = 36.9 bits (84), Expect = 4.9, Method: Composition-based stats.
Identities = 13/92 (14%), Positives = 28/92 (30%), Gaps = 8/92 (8%)
Query: 4 KYLICTMMVAMDVFFSFATDQDLVRTIVPYQCVRSLQRALDEAMRGDISLQKKI--PDIV 61
K + AMD++ A + P++ D G + ++
Sbjct: 1058 KRKLANDPRAMDLWR-LADKVADETMLRPHKV-----SLQDSHAFGAAAKLVLQFKSFVI 1111
Query: 62 KETGVQLRATHMDVFVDNRNIDAVWIYTIISQ 93
K + + + ++R +D Y I
Sbjct: 1112 KSMNAKFIRSGHEAMKNHRAMDMALTYAISGG 1143
>gi|153870129|ref|ZP_01999592.1| conserved hypothetical protein [Beggiatoa sp. PS]
gi|152073405|gb|EDN70408.1| conserved hypothetical protein [Beggiatoa sp. PS]
Length = 780
Score = 36.9 bits (84), Expect = 5.1, Method: Composition-based stats.
Identities = 32/220 (14%), Positives = 65/220 (29%), Gaps = 14/220 (6%)
Query: 147 PYLHLLIGRAMMPFSSQQAVHFFDYVRLTSPGTFLEEIALRNLLEITQNEVGERAFGYIR 206
P L L A + A+ + R P EEI + + +
Sbjct: 369 PELVLEYVEANSENDPELAISLLEKARQRWPEQ--EEITFTMAGAYDAIGEHQYSMTLLS 426
Query: 207 AYVTQFHHSIYKDHFISVLLRFFLHGQLKLPDEDIVFTISFFSLEEQRAIYLKIA-QNSV 265
Y+ + S +VL + DE FT E + L ++
Sbjct: 427 QYLESYPDSP-----QTVLAYGTFLLEEGGTDELQNFTAGLLKRELSEQVQLNCHWLLAL 481
Query: 266 ISGKRKIGFLAIKQLKRIIDRLDYKDLA---TIQLYENILNIPFVDIMSLQRST-CNIPY 321
K++ A +QL ++ R A +L + N+ +
Sbjct: 482 EYTKQEEFESAKQQLSILLARNPNAANAKTLLARLERKMGNLTA--ALQHLDELVEQFDE 539
Query: 322 YSLMEQDRYLKKASEIIMSEIGKSLIDIDFEHIQKDLLLD 361
+ +R + ++ S + FE++ + ++
Sbjct: 540 ADQHDWERMIVATLLEDWDKVRHSAKRLGFENLPTEGPIE 579
>gi|332521272|ref|ZP_08397728.1| Tetratricopeptide TPR_1 repeat-containing protein [Lacinutrix
algicola 5H-3-7-4]
gi|332043000|gb|EGI79198.1| Tetratricopeptide TPR_1 repeat-containing protein [Lacinutrix
algicola 5H-3-7-4]
Length = 1005
Score = 36.9 bits (84), Expect = 5.3, Method: Composition-based stats.
Identities = 43/274 (15%), Positives = 92/274 (33%), Gaps = 18/274 (6%)
Query: 120 KYFSGQLEESSKELSKIKDKDNTRGIVPYLHLLIGRAMMPFS-SQQAVHFFDYVRLTSPG 178
+Y + K+ K + H + + + +Q+A + YV S
Sbjct: 731 QYLDDNTNNAIKQFEKYNREFKNGLHATQAHFYLAQLYFKENENQKAAPNYRYVVDASQS 790
Query: 179 TFLEEIALRNLLEITQNEVGERAFGYIRAYVTQ--FH-HSIYKDHFISVLLRFFLHGQLK 235
F EE LR + + E A ++ T+ F +S++ +
Sbjct: 791 EFTEEALLRLSQITLEKKDWENALPILKRLETEANFPQNSLFAQSNLMQANYQLKKYNDA 850
Query: 236 LPDEDIVFTISFFSLEEQRAIYLKIAQNSVISGKRKIGFLAIKQLKRIIDRLDYKDLATI 295
+ + V + S + + + IA++++ +G LA +Q++ + +
Sbjct: 851 VAYAEKVLSHSTLDNKVKSDAQVIIARSAIKTGNEAKAKLAYEQVELTATGVTAAEALYY 910
Query: 296 QLY-ENILNIPFVDIMSLQRSTCNIPYYS---------LMEQDRYLKKA--SEIIMSEIG 343
Y +N + + QR + Y + + L A + I+ I
Sbjct: 911 NAYFKNKAGAYQNSLKATQRLVKDFSSYRYYGAKGLIVMAKNQYALNDAFQATYILESIP 970
Query: 344 KSLIDIDFEHIQKDLLLD--KKEPRHTNVSMGIE 375
K+ + + + L K E TN S+ +
Sbjct: 971 KNFGEFEDVVAEAAEELSKIKAEEAKTNASVDTQ 1004
>gi|260062000|ref|YP_003195080.1| hypothetical protein RB2501_10422 [Robiginitalea biformata
HTCC2501]
gi|88783562|gb|EAR14733.1| hypothetical protein RB2501_10422 [Robiginitalea biformata
HTCC2501]
Length = 1006
Score = 36.9 bits (84), Expect = 5.3, Method: Composition-based stats.
Identities = 32/253 (12%), Positives = 71/253 (28%), Gaps = 22/253 (8%)
Query: 84 AVWIYTIISQDLSVVDDLIAKDTKGYFDIAIVYAL-----KKYFSGQLEESSKELSKIKD 138
A IY + Q + D D + A K+ G +++ L K +
Sbjct: 689 AKLIYVDMGQVDQYAAWVRGLDFVEVTDSELEAASFEAAEKQLVEGNDAAAARALEKYLE 748
Query: 139 KDNTR--GIVPYLHLLIGRAMMPFSSQQAVHFFDYVRLTSPGTFLEEIALRNLLEITQNE 196
+ + Y +L + +A+ F+ V G E+ R +
Sbjct: 749 QFPNGANRVAAYFNLGQIA-YADGQADKALAHFEVVADAGRGERAEQALTRVCEILVSRG 807
Query: 197 VGERAFGYIRAYVTQFHHS---IYKDHFIS--VLLRFFLHGQLKLPDEDIVFTISF--FS 249
+ Y+ + + F ++ +F ++
Sbjct: 808 D----YAAAMPYLERLEATADIPQNRTFAQSNLMKGYFEKQAYDRTLAYAEKVLASPSLD 863
Query: 250 LEEQRAIYLKIAQNSVISGKRKIGFLAIKQLKRIIDRLDYKDLATIQLYENILNIPFVDI 309
+ L IA+++ +G + A ++ I + A Y+ D
Sbjct: 864 DRIRSDARLMIARSAWATGNTEKARQAYAEVLSIA---TGRAAAEALYYQAHFKREDGDF 920
Query: 310 MSLQRSTCNIPYY 322
+ +S +
Sbjct: 921 EASNQSVQRLARD 933
>gi|154287492|ref|XP_001544541.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150408182|gb|EDN03723.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 774
Score = 36.9 bits (84), Expect = 5.4, Method: Composition-based stats.
Identities = 20/146 (13%), Positives = 40/146 (27%), Gaps = 30/146 (20%)
Query: 251 EEQRAIYLKIAQNSVISGKRKIGFLAIKQLKRIIDRLDYKDLATIQLYENILNIPFVDIM 310
+E + L A+ + + + L+ ++ D A
Sbjct: 98 DEPSDLELLQAKRA-----KALASLSQRRASSHGANSGNADAAR---------------- 136
Query: 311 SLQRSTCNIPYYSLMEQDRYLKKASEIIMSEIGKSLIDIDFEHIQKDLLLDKKEPRHTNV 370
+ ++ S D+ L + + KD + P
Sbjct: 137 RSSGTLASLTQGSESAIDQPLHAKGSAAAR---------NAKSSDKDTPAAAESPSGRMG 187
Query: 371 SMGIESFIKKNRSQIESIDVLLAEAR 396
++ + + E ID LLAE R
Sbjct: 188 AVEQQKPHPNQIASAEDIDGLLAEGR 213
>gi|212671419|ref|YP_002308419.1| internal virion protein D [Kluyvera phage Kvp1]
gi|211997263|gb|ACJ14580.1| internal virion protein D [Kluyvera phage Kvp1]
Length = 1315
Score = 36.9 bits (84), Expect = 5.8, Method: Composition-based stats.
Identities = 13/92 (14%), Positives = 28/92 (30%), Gaps = 8/92 (8%)
Query: 4 KYLICTMMVAMDVFFSFATDQDLVRTIVPYQCVRSLQRALDEAMRGDISLQKKI--PDIV 61
K + AMD++ A + P++ D G + ++
Sbjct: 1058 KRKLANDPRAMDLWR-LADKVADETMLRPHKV-----SLQDSHAFGAAAKLVLQFKSFVI 1111
Query: 62 KETGVQLRATHMDVFVDNRNIDAVWIYTIISQ 93
K + + + ++R +D Y I
Sbjct: 1112 KSMNSKFIRSGHEAMKNHRAMDMALTYAISGG 1143
>gi|184200862|ref|YP_001855069.1| glucose-6-phosphate 1-dehydrogenase [Kocuria rhizophila DC2201]
gi|183581092|dbj|BAG29563.1| glucose-6-phosphate 1-dehydrogenase [Kocuria rhizophila DC2201]
Length = 510
Score = 36.9 bits (84), Expect = 5.8, Method: Composition-based stats.
Identities = 13/72 (18%), Positives = 27/72 (37%), Gaps = 8/72 (11%)
Query: 197 VGERAFGYIRAYVTQFHHSIYKDHFISVLLRF--FLHGQLKLPD--EDIVFTISFFSLEE 252
+ Y++ +VT+ + Y + + F+HG+ D + + T+ +
Sbjct: 67 DNAQFAEYVKEHVTEHARTPYNEDLWNQFASGLRFVHGEFDDDDAYDRLAQTLDELDRDR 126
Query: 253 Q----RAIYLKI 260
A YL I
Sbjct: 127 GTRGNHAFYLSI 138
>gi|289548649|ref|YP_003473637.1| hypothetical protein Thal_0878 [Thermocrinis albus DSM 14484]
gi|289182266|gb|ADC89510.1| Tetratricopeptide TPR_2 repeat protein [Thermocrinis albus DSM
14484]
Length = 850
Score = 36.9 bits (84), Expect = 5.9, Method: Composition-based stats.
Identities = 29/230 (12%), Positives = 66/230 (28%), Gaps = 22/230 (9%)
Query: 99 DDLIAKDTKGYFDIAIVYALKKYFSGQLEESSKELSKIKDKDNTRGIVPYLHLLIGRAMM 158
+ + + ++ A G ++ L+ D++ L+LL M
Sbjct: 449 EVITTLEKDDRLQARLLKAEAYLLLGNPAKARSYLTPQTDRE--------LYLLGLSYFM 500
Query: 159 PFSSQQAVHFFDYVRLTSPGTFLEEIALRNLLEITQNEVGERAFGYIRAYVTQFHHSIYK 218
+AV FF V +SP + L+ +A R + ++ + Y
Sbjct: 501 EEDYNKAVEFFSRVPESSP--LRPQALLKMGDAFYNMGDLSKAQETYRKVIEEYPDTPYA 558
Query: 219 DHFISVLLRFFLHGQLKLPDEDIVFTISFFSLEE--QRAIYLKIAQNSVISGKRKIGFL- 275
LL + ++ + + + L++A+ + +
Sbjct: 559 RQATLALLEAKPTNMNIEQETKLIEDYLKKDPDSPTAQHLKLQLAKLYIQQNRLSDAQRL 618
Query: 276 ---------AIKQLKRIIDRLDYKDLATIQLYENILNIPFVDIMSLQRST 316
+ L + D + LY+ P D ++
Sbjct: 619 LLDLVGTPVESRALLLLADIEPDVKKRLVLLYKVYKEGPPTDAQLARQKL 668
>gi|197120101|ref|YP_002140528.1| bifunctional SAM-dependent methyltransferase, type
11,/glycosyltransferase, family 2, TPR domain-containing
protein [Geobacter bemidjiensis Bem]
gi|197089461|gb|ACH40732.1| SAM-dependent methyltransferase, type 11, and glycosyltransferase,
family 2, TPR domain-containing protein [Geobacter
bemidjiensis Bem]
Length = 1523
Score = 36.9 bits (84), Expect = 6.3, Method: Composition-based stats.
Identities = 30/213 (14%), Positives = 71/213 (33%), Gaps = 18/213 (8%)
Query: 73 MDVFVDNRNIDAVWIYTIISQDLSVVDDLIAKDTKGYFDIAIVYALKKYFSGQLEESSKE 132
++ + + DA W DL+ ++ A + A++ K G+L ++ +
Sbjct: 849 AAMWKNRKAFDAKW-------DLAALEQGTAARVVTH--NAMLRGAKLARRGKLNDAVEL 899
Query: 133 LSKIKDKDNTRGIVPYLHLLIGRAMMPFSSQQAVHFFDYVRLTSPGTFLEEIALRNLLEI 192
+ + + + PYL L G + ++A+ + V P + AL
Sbjct: 900 MLQEGIRFSPASPAPYLALA-GILCEAGNWREALEVLEQV----PAGCELDAALMRGRAF 954
Query: 193 TQNEVGERAFGYIRAYVTQFHHSIYKDHFISVLLRFFLHGQLKLPDEDIVFTISFFSLEE 252
++ +A + + + G+ + +E + I+
Sbjct: 955 KESGEPAQAVEAAKQAEGIDPEAP--GTLHLNGVLALSQGEAEKGEELLRRAIT-ADPGF 1011
Query: 253 QRAIYLKIAQNSVISGKRKIGFLAIKQLKRIID 285
Y +AQ + G+R+ G + +
Sbjct: 1012 ALP-YGALAQTAWERGEREQGVRLAELAFVLSP 1043
>gi|283781582|ref|YP_003372337.1| alanyl-tRNA synthetase [Pirellula staleyi DSM 6068]
gi|283440035|gb|ADB18477.1| alanyl-tRNA synthetase [Pirellula staleyi DSM 6068]
Length = 935
Score = 36.6 bits (83), Expect = 6.4, Method: Composition-based stats.
Identities = 22/151 (14%), Positives = 43/151 (28%), Gaps = 12/151 (7%)
Query: 246 SFFSLEEQRAIYLKIAQNSVISGKRKIGFLAIKQLKRIIDRLDYKDLATIQLYENILNIP 305
+ + IA+ V +G R+I L ++ K ++ L L
Sbjct: 662 THLDNTRDVLAFEIIAEEGVAAGTRRIVALTGEKAKSFSEKTSTALNELANLLGVELLA- 720
Query: 306 FVDIMSLQRSTCNIPYYSLMEQDRYLKKASEIIMSEIGKSLIDIDFEHIQKDLLLDKKEP 365
+ R+ +D + AS S S K
Sbjct: 721 ---VPQAVRTLAQ------QVRDLKKQLASGGKGSTTETSPPRGTVSMAPPSAAQIKAAL 771
Query: 366 RHTNVSMGIESFIKKNRSQ--IESIDVLLAE 394
+ T ++ + F R+ +E + L +
Sbjct: 772 KETARTLNVGPFDAPARAAAMLEEVTTLTKQ 802
>gi|301063225|ref|ZP_07203774.1| tetratricopeptide repeat protein [delta proteobacterium NaphS2]
gi|300442653|gb|EFK06869.1| tetratricopeptide repeat protein [delta proteobacterium NaphS2]
Length = 920
Score = 36.6 bits (83), Expect = 6.5, Method: Composition-based stats.
Identities = 26/187 (13%), Positives = 55/187 (29%), Gaps = 26/187 (13%)
Query: 218 KDHFISVLLR---FFLHGQLKLPDEDIVFTISFFSLEEQRAIYLKIAQNSVISGKRKIGF 274
+HF S+ F + + + + +S R +YL +A +I G
Sbjct: 658 AEHFRSLKSAGIEAFKNRRFGDAHQALQKALSLKED---REVYLYLAYTQMILGDAS--- 711
Query: 275 LAIKQLKRIIDRLDYKDLATIQLYENILNIPFVDIMSLQRSTCNIPYY-SLMEQDRYLKK 333
A ++ + ++LY+ +++ + + D LK
Sbjct: 712 -ASEETLE---KGIAAFPYEVRLYQVYARQLAAR-GENEKALKLVDRALQMSPDDPTLK- 765
Query: 334 ASEIIMSEIGKSLIDIDF-----EHIQKDLLLDKKEPRHTNVSMGIESFIKKNRSQIESI 388
+I + QK L+K S + S+
Sbjct: 766 ---VIRQNLTAPPASERQFSNKKPAPQKARPLEKA--VEGAASAKWQGIASFKASKYTEA 820
Query: 389 DVLLAEA 395
+ LL+ +
Sbjct: 821 EKLLSRS 827
>gi|115482520|ref|NP_001064853.1| Os10g0477000 [Oryza sativa Japonica Group]
gi|78708814|gb|ABB47789.1| expressed protein [Oryza sativa Japonica Group]
gi|113639462|dbj|BAF26767.1| Os10g0477000 [Oryza sativa Japonica Group]
Length = 1166
Score = 36.6 bits (83), Expect = 6.6, Method: Composition-based stats.
Identities = 16/75 (21%), Positives = 31/75 (41%), Gaps = 2/75 (2%)
Query: 226 LRFFLHGQLKLPDEDIVFTISFFSLEEQRAIYLKIAQNSVISGKRKIGFLAIKQLKRIID 285
L+ + D+ F +S +EQ A+Y +IA+++ + + L ++ R+
Sbjct: 479 LKAAADSAFEDTDDAEYFHVSVSKRDEQLALYAQIARSAADTTIPFLAQLFSERFARLSQ 538
Query: 286 RLDYKDLATIQ--LY 298
R D LY
Sbjct: 539 RNGENDPTQTLEELY 553
>gi|222613005|gb|EEE51137.1| hypothetical protein OsJ_31887 [Oryza sativa Japonica Group]
Length = 1025
Score = 36.6 bits (83), Expect = 7.0, Method: Composition-based stats.
Identities = 16/75 (21%), Positives = 31/75 (41%), Gaps = 2/75 (2%)
Query: 226 LRFFLHGQLKLPDEDIVFTISFFSLEEQRAIYLKIAQNSVISGKRKIGFLAIKQLKRIID 285
L+ + D+ F +S +EQ A+Y +IA+++ + + L ++ R+
Sbjct: 417 LKAAADSAFEDTDDAEYFHVSVSKRDEQLALYAQIARSAADTTIPFLAQLFSERFARLSQ 476
Query: 286 RLDYKDLATIQ--LY 298
R D LY
Sbjct: 477 RNGENDPTQTLEELY 491
>gi|218184739|gb|EEC67166.1| hypothetical protein OsI_34027 [Oryza sativa Indica Group]
Length = 1025
Score = 36.6 bits (83), Expect = 7.0, Method: Composition-based stats.
Identities = 16/75 (21%), Positives = 31/75 (41%), Gaps = 2/75 (2%)
Query: 226 LRFFLHGQLKLPDEDIVFTISFFSLEEQRAIYLKIAQNSVISGKRKIGFLAIKQLKRIID 285
L+ + D+ F +S +EQ A+Y +IA+++ + + L ++ R+
Sbjct: 417 LKAAADSAFEDTDDAEYFHVSVSKRDEQLALYAQIARSAADTTIPFLAQLFSERFARLSQ 476
Query: 286 RLDYKDLATIQ--LY 298
R D LY
Sbjct: 477 RNGENDPTQTLEELY 491
>gi|239834060|ref|ZP_04682388.1| FAD-binding dehydrogenase [Ochrobactrum intermedium LMG 3301]
gi|239822123|gb|EEQ93692.1| FAD-binding dehydrogenase [Ochrobactrum intermedium LMG 3301]
Length = 552
Score = 36.6 bits (83), Expect = 7.2, Method: Composition-based stats.
Identities = 6/39 (15%), Positives = 13/39 (33%)
Query: 92 SQDLSVVDDLIAKDTKGYFDIAIVYALKKYFSGQLEESS 130
D V +D G +V + + G+ + +
Sbjct: 226 GGDPDKVRRAWPRDRLGNPPKEMVLGVPAHVDGRGIDIA 264
>gi|299065274|emb|CBJ36442.1| conserved protein of unknown function, tpr repeat domain [Ralstonia
solanacearum CMR15]
Length = 700
Score = 36.6 bits (83), Expect = 7.5, Method: Composition-based stats.
Identities = 44/360 (12%), Positives = 94/360 (26%), Gaps = 37/360 (10%)
Query: 38 SLQRALDEAMRGDISLQKKIPDIVKETGVQLRATHMDVFVDNRNIDAVWIYTIISQDLSV 97
S Q DEA + P +V L +V + + T+ +
Sbjct: 194 SAQGRHDEAAAAAQHAIELSPRLV---DAYLNLAEAEVGRHRHEAALLVLDTLSTFAPQH 250
Query: 98 VDDLIAK-DTKGYFDIAIVYALKKYFSGQLEESSKELSKIKDKDNTRGIVPYLHLLIGRA 156
L A+ + + + + + R + L
Sbjct: 251 PAALTARANVLKRAERP-----------DEALAVARQAVVLA---PRSAEAHHALATALQ 296
Query: 157 MMPFSSQQAVHFFDYVRLTSPGTFLEEIALRNLLEITQNEVGERAFGYIRAYVTQFHHSI 216
+ + + HF RL PG EE + + + + + A + QF S+
Sbjct: 297 TLGQTDEALPHFEQAARL--PGAVAEEALVGRAILLMEAGRRDAARAAFDQALAQFPGSV 354
Query: 217 YKDHFISVLLRFFLHGQLKLPDEDIVFTISFFSLEEQRAIYLKIAQNSVISGKRKIGFLA 276
L D DI + + E+R++ +I+ A
Sbjct: 355 ------QALAGRADARTFTAGDPDIAALEACLADGERRSLRDRIS-----------AHFA 397
Query: 277 IKQLKRIIDRLDYKDLATIQLYENILNIPFVDIMSLQRSTCNIPYYSLMEQDRYLKKASE 336
+ + + + D + R I E L E
Sbjct: 398 LGKAYLDLQDPARAFHHLDAGNRQKRSTFTYDAAASSRWMERIAEAFSPELYDQLHATGE 457
Query: 337 IIMSEIGKSLIDIDFEHIQKDLLLDKKEPRHTNVSMGIESFIKKNRSQIESIDVLLAEAR 396
+ + + + ++ + + ++ + + + L +EAR
Sbjct: 458 PSALPVFIVGMPRSGTTLIEQIVSSHPQVMGAGELSALRLVVEGSGLFPDGLQGLASEAR 517
>gi|298529797|ref|ZP_07017200.1| Tetratricopeptide TPR_2 repeat protein [Desulfonatronospira
thiodismutans ASO3-1]
gi|298511233|gb|EFI35136.1| Tetratricopeptide TPR_2 repeat protein [Desulfonatronospira
thiodismutans ASO3-1]
Length = 568
Score = 36.6 bits (83), Expect = 7.5, Method: Composition-based stats.
Identities = 18/146 (12%), Positives = 39/146 (26%), Gaps = 27/146 (18%)
Query: 182 EEIALRNLLEITQNEVGERAFGYIRAYVTQFHHSIYKDHFISVLLRFFLHGQLKLPDEDI 241
E+ AL + R Y+ Q G+ + + +
Sbjct: 56 EKAALALEKALVLGPSVRLYQDLAREYLRQ--------------------GEKQKAVDIL 95
Query: 242 VFTISFFSLEEQRAIYLKIAQNSVISGKRKIGFLAIKQLKRIIDRLDYKDLATIQLYENI 301
+ +Y ++A+ ++ G R A+++ K ++ Y
Sbjct: 96 QDATGIYPRTP--ELYFQMAEFYLVKGDRSGAVKALEKYKDLVPEDLDVYEDLAAFY--- 150
Query: 302 LNIPFVDIMSLQRSTCNIPYYSLMEQ 327
I D IP + +
Sbjct: 151 --IEMRDYAGAVDLLQEIPPDEMTPE 174
>gi|283781243|ref|YP_003371998.1| glycosyl hydrolase family 98 carbohydrate binding module [Pirellula
staleyi DSM 6068]
gi|283439696|gb|ADB18138.1| Glycosyl hydrolase family 98 putative carbohydrate binding module
[Pirellula staleyi DSM 6068]
Length = 620
Score = 36.6 bits (83), Expect = 7.6, Method: Composition-based stats.
Identities = 8/65 (12%), Positives = 20/65 (30%), Gaps = 1/65 (1%)
Query: 289 YKDLATIQLYENILNIPFVDIMSLQRSTCNIPYYSL-MEQDRYLKKASEIIMSEIGKSLI 347
+ +L I D + + + S E D+ L + + ++ + I +
Sbjct: 416 SAYQSQAKLVPITAAIAASDSQGIASAIQKLEASSTGSEADQKLLEVARVLATTISRERK 475
Query: 348 DIDFE 352
Sbjct: 476 VAPAA 480
>gi|256390298|ref|YP_003111862.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM
44928]
gi|256356524|gb|ACU70021.1| transcriptional regulator, LuxR family [Catenulispora acidiphila
DSM 44928]
Length = 919
Score = 36.6 bits (83), Expect = 7.6, Method: Composition-based stats.
Identities = 13/93 (13%), Positives = 31/93 (33%), Gaps = 5/93 (5%)
Query: 81 NIDAVWIYTIISQDLSVVDDLIAKDTKGYFDIAIVYALKKYFSGQLEESSKELSKIKDKD 140
N+DA ++ + + L A V + + + L+ +++
Sbjct: 204 NLDA--VHGASGGNPQYLRILSADGDPHADAARAVVGELADLDPRTLTTLQTLAVLREPS 261
Query: 141 NTRGIVPYLHLLIGRAMMPFSSQQAVHFFDYVR 173
+ + I L A+ + ++ D VR
Sbjct: 262 HPQLIAAVAELSAAEAL---DALDSLTRLDIVR 291
>gi|240128947|ref|ZP_04741608.1| hypothetical protein NgonS_10057 [Neisseria gonorrhoeae SK-93-1035]
gi|268687332|ref|ZP_06154194.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
gi|268627616|gb|EEZ60016.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
Length = 389
Score = 36.6 bits (83), Expect = 7.6, Method: Composition-based stats.
Identities = 27/171 (15%), Positives = 48/171 (28%), Gaps = 10/171 (5%)
Query: 115 VYALKKYFSGQLEESSKELSKIKDKDNTRGIVPYLHLLIGRAMMPFSSQQAVHFFDYVRL 174
+ AL SG+ E+ + + L+L +G+ L
Sbjct: 48 LDALVDRNSGRAARELAEVVDGRPQSYD------LNLTLGKLYRQRGENDKAINIHRTML 101
Query: 175 TSPGTFLEEIALRNLLEITQNEVGERAFGYIRAYVTQFHHSIYKDHFISVLLRFFLHGQL 234
SP T E+ A R L E+ QN LL + +
Sbjct: 102 DSPDTVGEKRA-RVLFELAQNYQSAGLVDRAEQIFLGLQDGEMAREARQHLLNIYQQDRD 160
Query: 235 KLPDEDIVFTISFFSLEEQRAI---YLKIAQNSVISGKRKIGFLAIKQLKR 282
+ +S Q I Y ++AQ ++ + + +
Sbjct: 161 WEKAVETAQLLSHDEQTYQFEIAQFYCELAQAALFKSNFDVARFNVGKALE 211
>gi|163761257|ref|ZP_02168333.1| hypothetical protein HPDFL43_10891 [Hoeflea phototrophica DFL-43]
gi|162281596|gb|EDQ31891.1| hypothetical protein HPDFL43_10891 [Hoeflea phototrophica DFL-43]
Length = 573
Score = 36.6 bits (83), Expect = 7.8, Method: Composition-based stats.
Identities = 10/76 (13%), Positives = 27/76 (35%), Gaps = 4/76 (5%)
Query: 60 IVKETGVQLRATHMDVFVDNRNIDAVWIYTIISQ---DLSVVDDLIAKDTKGYFDIAIVY 116
+ + + R+T DV D + A + +L +V + G ++
Sbjct: 215 LAADASERGRSTSRDVIGDFE-LRAPSVLVTSGGIGGNLDLVRKAWPRKRLGEPPENMIS 273
Query: 117 ALKKYFSGQLEESSKE 132
+ + G++ ++
Sbjct: 274 GVPAHVDGRMIAIAEA 289
>gi|196234175|ref|ZP_03133007.1| heme-binding protein [Chthoniobacter flavus Ellin428]
gi|196221734|gb|EDY16272.1| heme-binding protein [Chthoniobacter flavus Ellin428]
Length = 1142
Score = 36.2 bits (82), Expect = 8.3, Method: Composition-based stats.
Identities = 16/177 (9%), Positives = 44/177 (24%), Gaps = 15/177 (8%)
Query: 226 LRFFLHGQLKLPDEDIVFTISFFSLEEQRAIYLKIAQNSVISGKRKIGFLAIKQLKRIID 285
L + + + A + + R+ +
Sbjct: 774 LDALADWNEPFHRDRVNGLWHPLPPSRNAEAPVASAAKIIPALLREPSEKMRLAAAGMAG 833
Query: 286 RLDYKDLATIQLYENILN---IPFVDIMSLQRSTCNIPYYSLMEQ--------DRYLKKA 334
L L ++ + + R+ + L + D+ L A
Sbjct: 834 DLHVTASQDFLL--ALVGDHSLGGKTRAAALRALGTMESAKLADGIKIAVADTDKPLLAA 891
Query: 335 SEIIMSEIGKSLIDIDFEHIQKDLLLDKKEPRHTNVSMGIESFIKKNRSQIESIDVL 391
+ + ++ S D + +E + ++G ++ + +D L
Sbjct: 892 ARELAVKV--SPADAVTLNAPVLDDGTLREKQAALATIGSLQVPAADKVLLAELDKL 946
>gi|299115814|emb|CBN74377.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 1882
Score = 36.2 bits (82), Expect = 8.6, Method: Composition-based stats.
Identities = 28/198 (14%), Positives = 53/198 (26%), Gaps = 34/198 (17%)
Query: 165 AVHFFDYVRLTSPGTFLEEIALRNLLEITQNEVGER-------AFGYIR-AYVTQFHHSI 216
A+ D V T EE + + + ++ R R ++
Sbjct: 407 ALVLVDEV-----HTIGEERGATLEVILARMKMVSRSTEVVSMGLPASRMRFIALSATLP 461
Query: 217 YKDHFISVLLRFFLHGQLKLPDEDIVFTIS---------FFSLEEQRAIYLKIAQNSVIS 267
+ F S L + + ++ F + +A+ S +
Sbjct: 462 NANDFGSFLGAEVFRFGDEFRPVPLQTHVAGYPSGSKPFLFDRGLNNRVAGTVARYS--N 519
Query: 268 GKRKIGFLAIKQ-----LKRIIDRLDYKDLATIQL---YENILNIPFVDIMSLQRSTC-- 317
GK + F K+ + DY Q+ Y D +
Sbjct: 520 GKPSLVFCGSKKDTETVASSLAKGTDYARRTGSQVVMQYLATAANTAEDPQLAKLMMRGV 579
Query: 318 NIPYYSLMEQDRYLKKAS 335
I L +DR L + +
Sbjct: 580 AIHNSGLSPRDRGLVERA 597
>gi|303247915|ref|ZP_07334182.1| Tetratricopeptide TPR_2 repeat protein [Desulfovibrio
fructosovorans JJ]
gi|302490639|gb|EFL50542.1| Tetratricopeptide TPR_2 repeat protein [Desulfovibrio
fructosovorans JJ]
Length = 1624
Score = 36.2 bits (82), Expect = 8.9, Method: Composition-based stats.
Identities = 26/244 (10%), Positives = 58/244 (23%), Gaps = 35/244 (14%)
Query: 109 YFDIAIVYALKKYFSGQLEESSKELSKIKDKDNTRGIVPYLHLLIGRAMMPFSSQQAVH- 167
D +V + + K +I + L A +A+
Sbjct: 539 NADGKLVRVALS-----PQLAGKLYLRIGRALVDAQLGDGFFFLTPPAWAKNLPPKAMGA 593
Query: 168 -FFDYVRLTSPGTFLEEIALRNLLEITQNEVGERAFGYIRAYVTQFHHSIYKDHFISVLL 226
D ++ +EE A + + A Y+ + S D +L
Sbjct: 594 ILADAGKVLWDVGRIEEAATFLEAALADDPDRNEARLYLALARKRQGRS---DDAERLLA 650
Query: 227 RFFLHGQLKLPDEDIVFTISFFSLEEQRAIYLKIAQNSVISGKRKIGFLAIKQLKRIIDR 286
+ + + + GK ++ +
Sbjct: 651 EAIAKASPFDREYALGEF-------------------AALDGKENEALAHFRKALTLAPN 691
Query: 287 LDYKDLATIQLYENILNIPFVDIMSLQRSTCNIPYYSLMEQDRYLKKASEIIMSEIGKSL 346
D I + + + R + L + DR + + ++ E+G
Sbjct: 692 DDRMRQ------RVISLLVAGNDFTTAREYADWYEARLAKDDRAVFGTAAVVRLEMGDPA 745
Query: 347 IDID 350
Sbjct: 746 GSES 749
>gi|149497639|ref|XP_001517241.1| PREDICTED: similar to SH3 domain and tetratricopeptide repeats 2,
partial [Ornithorhynchus anatinus]
Length = 1161
Score = 36.2 bits (82), Expect = 9.3, Method: Composition-based stats.
Identities = 9/82 (10%), Positives = 23/82 (28%)
Query: 241 IVFTISFFSLEEQRAIYLKIAQNSVISGKRKIGFLAIKQLKRIIDRLDYKDLATIQLYEN 300
+ + + +QR + L +A+ + G+ + Q + RL + L
Sbjct: 835 LADARAREDIGQQRRLCLALARAHLQHGRSSDAIRCLSQAMALAQRLGEAEAFECSLCLG 894
Query: 301 ILNIPFVDIMSLQRSTCNIPYY 322
+ +
Sbjct: 895 WACVMAGQAGQALDVLGPLVRS 916
>gi|167904905|ref|ZP_02492110.1| hypothetical protein BpseN_21844 [Burkholderia pseudomallei NCTC
13177]
Length = 581
Score = 36.2 bits (82), Expect = 9.3, Method: Composition-based stats.
Identities = 12/79 (15%), Positives = 30/79 (37%)
Query: 222 ISVLLRFFLHGQLKLPDEDIVFTISFFSLEEQRAIYLKIAQNSVISGKRKIGFLAIKQLK 281
+LPD + + Q I +++A+ ++I+ +R+I + +
Sbjct: 186 RDHERTARPADAERLPDARLSGPLRSRPRMMQHEIEIELARGAIIAARREIACDGARPVL 245
Query: 282 RIIDRLDYKDLATIQLYEN 300
R D + + A ++
Sbjct: 246 RKHDAVRAEFGARGCVFAG 264
>gi|167826463|ref|ZP_02457934.1| hypothetical protein Bpseu9_22510 [Burkholderia pseudomallei 9]
Length = 580
Score = 36.2 bits (82), Expect = 9.3, Method: Composition-based stats.
Identities = 12/79 (15%), Positives = 30/79 (37%)
Query: 222 ISVLLRFFLHGQLKLPDEDIVFTISFFSLEEQRAIYLKIAQNSVISGKRKIGFLAIKQLK 281
+LPD + + Q I +++A+ ++I+ +R+I + +
Sbjct: 186 RDHERTARPADAERLPDARLSGPLRSRPRMMQHEIEIELARGAIIAARREIACDGARPVL 245
Query: 282 RIIDRLDYKDLATIQLYEN 300
R D + + A ++
Sbjct: 246 RKHDAVRAEFGARGCVFAG 264
>gi|162453139|ref|YP_001615506.1| hypothetical protein sce4863 [Sorangium cellulosum 'So ce 56']
gi|161163721|emb|CAN95026.1| putative membrane protein [Sorangium cellulosum 'So ce 56']
Length = 406
Score = 36.2 bits (82), Expect = 9.3, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 25/58 (43%)
Query: 161 SSQQAVHFFDYVRLTSPGTFLEEIALRNLLEITQNEVGERAFGYIRAYVTQFHHSIYK 218
S A+ +FD +PG L E AL LE+ Q E A Y+ ++ H Y
Sbjct: 339 DSADALAWFDTYLREAPGGALREQALGRSLELQQRRDREVARRAALRYLAEYPHGAYA 396
>gi|288576168|ref|ZP_05978311.2| tetratricopeptide repeat protein [Neisseria mucosa ATCC 25996]
gi|288566089|gb|EFC87649.1| tetratricopeptide repeat protein [Neisseria mucosa ATCC 25996]
Length = 604
Score = 36.2 bits (82), Expect = 9.7, Method: Composition-based stats.
Identities = 31/216 (14%), Positives = 68/216 (31%), Gaps = 14/216 (6%)
Query: 123 SGQLEESSKELSKIKDK-DNTRGIVPYLHLLIGRAMMPFSSQQAVHFFDYVRLTSPGTFL 181
+L E + ++ + + L G + +H D R SP +
Sbjct: 35 EARLAEQERLIAANDRAWKVFTLLGGEMALQKGD--AGMALGTYMHMLD--RTKSPD--V 88
Query: 182 EEIALRNLLEITQNEVGERAFGYIRAYVTQFHHSIYKDHFISVLLRFFLHGQLKLPDEDI 241
E AL + + E E I + LR L G+ +
Sbjct: 89 AERALEMAVSLNAFEQAE----LIYQKWREIEPVPGAAQKRMTWLRDLLLGKNDKHLSGL 144
Query: 242 VFTISFFSLEEQRAIYLKIAQNSVISGKRKIGFLAIKQLKRIIDRLDY-KDLATIQLYEN 300
++ + E+ R I+L +AQ +V + + A Q+ + + + A +
Sbjct: 145 DEVLAGATEEQNRRIFLLLAQTAVQ--QPDLAEKASAQVHKETLKYPEMPEAAIADAIYS 202
Query: 301 ILNIPFVDIMSLQRSTCNIPYYSLMEQDRYLKKASE 336
+ + ++ + + L L+ ++
Sbjct: 203 AYDGKKKNAIAALQRLAKLDSEILPPTMLTLRLMAQ 238
>gi|283780101|ref|YP_003370856.1| hypothetical protein Psta_2326 [Pirellula staleyi DSM 6068]
gi|283438554|gb|ADB16996.1| Tetratricopeptide TPR_2 repeat protein [Pirellula staleyi DSM 6068]
Length = 1581
Score = 36.2 bits (82), Expect = 9.7, Method: Composition-based stats.
Identities = 16/165 (9%), Positives = 44/165 (26%), Gaps = 11/165 (6%)
Query: 218 KDHFISVLLRFFLHGQLKLPDEDIV-FTISFFSLEEQRAIYLKIAQNSVISGKRKIGFLA 276
F + L + + F + + + ++ SG + L
Sbjct: 883 ATQFAPLAKLRLAQATLSGNAPLVELAAVQFSGTDSAAEAHQWLGDRALASGWFERARLE 942
Query: 277 IKQLKRIIDRLDYKDLATIQLYENI----------LNIPFVDIMSLQRSTCNIPYYSLME 326
+Q + L + I+L + ++ F DI + + +
Sbjct: 943 YEQARARNPALAAELAPRIRLAAAMLGVEAEAPVTADVRFGDISMSASNYETMIREMIAR 1002
Query: 327 QDRYLKKASEIIMSEIGKSLIDIDFEHIQKDLLLDKKEPRHTNVS 371
DR L + + + + + ++ + +
Sbjct: 1003 GDRGLTAVAAPVTDVPAPTSYTLKTQARLDGPAGERPNEEQGSRT 1047
>gi|134103621|ref|YP_001109282.1| putative Clp protease ATP-binding subunit [Saccharopolyspora
erythraea NRRL 2338]
gi|291004842|ref|ZP_06562815.1| putative Clp protease ATP-binding subunit [Saccharopolyspora
erythraea NRRL 2338]
gi|133916244|emb|CAM06357.1| putative Clp protease ATP-binding subunit [Saccharopolyspora
erythraea NRRL 2338]
Length = 860
Score = 36.2 bits (82), Expect = 9.8, Method: Composition-based stats.
Identities = 32/276 (11%), Positives = 71/276 (25%), Gaps = 35/276 (12%)
Query: 142 TRGIVPYLHLLIGRAMMPFSSQQAVHFFDYV--RLTS-----PGTFLE-EIALRN----L 189
+V L F +A+ D RL P E E A+R
Sbjct: 369 DGALVAAATLSDRYITARFLPDKAIDLVDEAASRLRMEIDSRPVEIDEVERAVRRLEIEE 428
Query: 190 LEITQNEVGERAFGYIRAYVTQFHHSIYKDHFISVLLRFFLHGQLKLPDEDIVFTI---- 245
+ + + E S D L Q + D + +
Sbjct: 429 MALAKEEDPASLDRLAA------LRSELADR-REKLSELTARWQGEKESIDKIRVLKTQL 481
Query: 246 ---------SFFSLEEQRAIYLKIAQNSVISGKRKIGFLAIKQLKRIIDRLDYKDLATIQ 296
+ + +A L+ + + + A + K ++ D
Sbjct: 482 EQLRGESERAERDGDLGKAAELRYGRIPTLEKELDSATAAQSRHKAMLQEEVTPDDV-AD 540
Query: 297 LYENILNIPFVDIMSLQRSTCNIPYYSLMEQDRYLKKASEIIMSEIGKSLIDIDFEHIQK 356
+ IP ++ + + L + +A + + ++ +
Sbjct: 541 VVSAWTGIPAGRLLEGETTKLLRMEDELSARVVGQAEAVRAVSDAVRRARAGVSDPDRPT 600
Query: 357 DL--LLDKKEPRHTNVSMGIESFIKKNRSQIESIDV 390
L T ++ + F+ + + ID+
Sbjct: 601 GSFMFLGPTGVGKTELAKALAGFLFDDDRAMVRIDM 636
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.309 0.137 0.354
Lambda K H
0.267 0.0416 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,895,218,472
Number of Sequences: 14124377
Number of extensions: 97771695
Number of successful extensions: 692949
Number of sequences better than 10.0: 4601
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 4394
Number of HSP's that attempted gapping in prelim test: 683914
Number of HSP's gapped (non-prelim): 11330
length of query: 396
length of database: 4,842,793,630
effective HSP length: 141
effective length of query: 255
effective length of database: 2,851,256,473
effective search space: 727070400615
effective search space used: 727070400615
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.7 bits)
S2: 82 (36.2 bits)