RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780528|ref|YP_003064941.1| chemotaxis protein [Candidatus
Liberibacter asiaticus str. psy62]
         (396 letters)



>d2ddha1 a.29.3.2 (A:278-460) Peroxisomal acyl-CoA oxidase-II,
           domains 3 and 4 {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 183

 Score = 29.0 bits (64), Expect = 0.71
 Identities = 16/107 (14%), Positives = 35/107 (32%), Gaps = 10/107 (9%)

Query: 27  VRTIVPYQCVRSLQRALDEAMR-------GDISLQKKIPDIVKETGVQLRATHMDVFVDN 79
           VR+ +     +SL +A   A+R        +I   +  P I+     Q +   +      
Sbjct: 4   VRSFLVGNAAQSLSKACTIAIRYSAVRRQSEIKQSEPEPQILDFQTQQYKLFPLLATAYA 63

Query: 80  RNIDAVWIYTIISQDLSVVDDLIAKDTKGYFDIAIVYALKKYFSGQL 126
            +        +    L + + +   D     ++  + A  K F+   
Sbjct: 64  FHF---VGRYMKETYLRINESIGQGDLSELPELHALTAGLKAFTTWT 107


>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase
           (SLT70), superhelical domain {Escherichia coli [TaxId:
           562]}
          Length = 450

 Score = 25.6 bits (55), Expect = 6.7
 Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 4/63 (6%)

Query: 249 SLEEQRAIYLKIAQNSVISGKRKIGFLAIKQLKRIIDRLDYKDLATIQLYENILNIPFVD 308
           SL+EQR+ Y +I Q        +   +  + +  + D   Y  L   Q+ ++++N P V 
Sbjct: 2   SLDEQRSRYAQIKQAW----DNRQMDVVEQMMPGLKDYPLYPYLEYRQITDDLMNQPAVT 57

Query: 309 IMS 311
           + +
Sbjct: 58  VTN 60


>d1w07a1 a.29.3.2 (A:273-461) Acyl-coenzyme A oxidase 1, domains 3
          and 4 {Thale cress (Arabidopsis thaliana) [TaxId:
          3702]}
          Length = 189

 Score = 25.5 bits (55), Expect = 8.1
 Identities = 11/77 (14%), Positives = 22/77 (28%), Gaps = 9/77 (11%)

Query: 25 DLVRTIVPYQCVRSLQRALDEAMR--------GDISLQKKIPDIVKETGVQLRATHMDVF 76
            VR  +      +L RA+  A R        G  +   +   ++     Q R   +   
Sbjct: 10 VYVRQTIVADASNALSRAVCIATRYSAVRRQFGAHNGGIETQ-VIDYKTQQNRLFPLLAS 68

Query: 77 VDNRNIDAVWIYTIISQ 93
                   W+  + + 
Sbjct: 69 AYAFRFVGEWLKWLYTD 85


>d1t8sa_ c.56.2.1 (A:) AMP nucleosidase {Escherichia coli [TaxId:
           562]}
          Length = 477

 Score = 25.3 bits (55), Expect = 9.2
 Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 7/41 (17%)

Query: 349 IDFEHIQKDLLLDKKEPRHTNVSMGIESFIKKNRSQIESID 389
              EH Q  +L        TN +  ++ F++   SQI   D
Sbjct: 185 TPVEHFQPFVLF-------TNYTRYVDEFVRWGCSQILDPD 218


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.140    0.392 

Gapped
Lambda     K      H
   0.267   0.0627    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,492,010
Number of extensions: 73527
Number of successful extensions: 240
Number of sequences better than 10.0: 1
Number of HSP's gapped: 240
Number of HSP's successfully gapped: 17
Length of query: 396
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 309
Effective length of database: 1,213,086
Effective search space: 374843574
Effective search space used: 374843574
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (24.8 bits)