HHsearch alignment for GI: 254780529 and conserved domain: COG1360
>COG1360 MotB Flagellar motor protein [Cell motility and secretion].
Probab=100.00 E-value=0 Score=352.68 Aligned_cols=238 Identities=32% Similarity=0.517 Sum_probs=171.8
Q ss_pred EEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCC-CCCCCCCCCCCCCCC
Q ss_conf 9982168888788743188799999999999999999750899999999998535543203665-555555676776666
Q gi|254780529|r 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTAS-KGIFDEQNPPERSSQ 95 (343)
Q Consensus 17 ikr~~~~~~~~~~~~~W~vtyAD~~TlLmaFFvll~s~s~~d~~k~~~i~~~f~p~~~~~~~~~-~~~~~~~~~~~~~~~ 95 (343)
T Consensus 2 ~~r~k~~~~--~~~~~w~~~yad~~tl~~~ffi~~~~~s~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~---------- 69 (244)
T COG1360 2 AKKKKEEEQ--HGGGAWKIAYADFMTLLLAFFIVLWAMSSISPEKFQQIAAYFRIAFSGAPGSASEGGKS---------- 69 (244)
T ss_pred CCCCCCCCC--CCCCCCCEECCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCC----------
T ss_conf 722026678--88852012547578899999999986301578889999997303014565554445432----------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCC
Q ss_conf 65544455566766656566776655443211222111233211111222223343222222200123210011100124
Q gi|254780529|r 96 NKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFL 175 (343)
Q Consensus 96 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (343)
T Consensus 70 -----------~~~~~~------------------------------------------~~~~~~~~~~----------- 85 (244)
T COG1360 70 -----------MQQVKE------------------------------------------KELAEELNVG----------- 85 (244)
T ss_pred -----------HHHCCC------------------------------------------CCCCCCCCHH-----------
T ss_conf -----------001010------------------------------------------0122453467-----------
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 65213578878889999999999999975553321013114511453499997034567455568754683565654436
Q gi|254780529|r 176 PPLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKI 255 (343)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~~~~~i~I~i~d~~~~~lF~~gsa~l~~~~~~~l~~i 255 (343)
T Consensus 86 -----~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~gl~i~i~~~---~~F~~gsa~~~~~~~~~l~~i 154 (244)
T COG1360 86 -----EAIEKKELSEKLGDLAKELESKPKD---IELEHQLGVDDVEEGLVISISDS---LMFASGSAVVQPEFRDLLLKI 154 (244)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHCCCEEEECCCCEEEEEECC---CCCCCCCCCCCHHHHHHHHHH
T ss_conf -----7876522366679999999989888---77534655887488628996244---464677521276679999999
Q ss_pred HHHHHHCCC-CEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC-CCHHHEEEEEECCCCCCCCCCCCC--CCCC
Q ss_conf 789861278-338987314676678741069999999999999999869-996571225630334888898852--1337
Q gi|254780529|r 256 GEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG-VSEDRISKISGFAHHRLKIASDPM--NSAN 331 (343)
Q Consensus 256 a~~l~~~~~-~i~IeGHTD~~p~~g~~~~Nw~LS~~RA~aV~~~L~~~G-v~~~ri~~v~G~g~~~P~~~n~t~--~~~N 331 (343)
T Consensus 155 a~~l~~~~~~~I~I~GHTDn~p~~~~~~sNWeLS~aRA~~v~~~L~~~g~~~~~~~-~~~G~gd~~Pva~n~t~~~ra~N 233 (244)
T COG1360 155 AKLLADIPNGNIRIEGHTDNVPIKGSFYSNWELSAARAQSVVRVLINGGLVEAKRL-SVVGYADTRPLADNDTAEGRAKN 233 (244)
T ss_pred HHHHHHCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEE-EEEECCCCCCCCCCCCHHHHHHC
T ss_conf 99987267982899865899766778885088899999999999997489985668-99712547767889881347657
Q ss_pred CEEEEEEECCC
Q ss_conf 55999995699
Q gi|254780529|r 332 RRIDILVEDRQ 342 (343)
Q Consensus 332 RRVEi~i~~~~ 342 (343)
T Consensus 234 RRVeI~i~~~~ 244 (244)
T COG1360 234 RRVEILILTKK 244 (244)
T ss_pred CEEEEEEECCC
T ss_conf 83799983589