HHsearch alignment for GI: 254780529 and conserved domain: PRK06925
>PRK06925 flagellar motor protein MotS; Reviewed.
Probab=100.00 E-value=0 Score=401.70 Aligned_cols=223 Identities=20% Similarity=0.394 Sum_probs=175.0
Q ss_pred EEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99821688887887431887999999999999999997508999999999985355432036655555556767766666
Q gi|254780529|r 17 IKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQN 96 (343)
Q Consensus 17 ikr~~~~~~~~~~~~~W~vtyAD~~TlLmaFFvll~s~s~~d~~k~~~i~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (343)
T Consensus 3 ~~~kk~~~e~~~g~p~WlvtyaD~mTLLlafFvlL~s~S~~d~~k~~~~~~s~~~~~~g---------------~----- 62 (230)
T PRK06925 3 LRKERFEREQSKGSPRWMVTFSDLITLILVFFILLFSMSQIDLQKFKAAVESFQDRGDG---------------E----- 62 (230)
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCC---------------C-----
T ss_conf 65567888788999735879999999999999999998707999999999998515688---------------8-----
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCC
Q ss_conf 55444555667666565667766554432112221112332111112222233432222222001232100111001246
Q gi|254780529|r 97 KIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLP 176 (343)
Q Consensus 97 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (343)
T Consensus 63 ----------~~~~~~~~~-------------------------------------------~----------------- 72 (230)
T PRK06925 63 ----------EPAELKIDA-------------------------------------------G----------------- 72 (230)
T ss_pred ----------CCCCCCCCC-------------------------------------------C-----------------
T ss_conf ----------987665566-------------------------------------------6-----------------
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 52135788788899999999999999755533210131145114534999970345674555687546835656544367
Q gi|254780529|r 177 PLSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIG 256 (343)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~~~~~i~I~i~d~~~~~lF~~gsa~l~~~~~~~l~~ia 256 (343)
T Consensus 73 -----~~~~~~~~~~~~~~~~~~~~~l~~---~~l~~~v~v~~~~~gv~i~l~---~~~lF~~Gsa~l~~~~~~~L~~ia 141 (230)
T PRK06925 73 -----DSDEEKTEKEQDELLKKVNTYIEE---NELSSQITAKRDERGVVLVLQ---EAVLFDTGEADVLKNAEPLLHKIA 141 (230)
T ss_pred -----CCHHHHHHHHHHHHHHHHHHHHHH---HHCCCCEEEEECCCEEEEEEC---CCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf -----411355689999999999999986---302466378876986899968---987878896534877999999999
Q ss_pred HHHHHCCCCEEEEEEECCCCCCCC-CCCHHHHHHHHHHHHHHHHHH-CCCCHHHEEEEEECCCCCCCCCCCCCC--CCCC
Q ss_conf 898612783389873146766787-410699999999999999998-699965712256303348888988521--3375
Q gi|254780529|r 257 EVLAHSTEVISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASDPMN--SANR 332 (343)
Q Consensus 257 ~~l~~~~~~i~IeGHTD~~p~~g~-~~~Nw~LS~~RA~aV~~~L~~-~Gv~~~ri~~v~G~g~~~P~~~n~t~~--~~NR 332 (343)
T Consensus 142 ~~l~~~~~~I~V~GHTD~~p~~~~~~~sNWeLS~aRA~~V~~~li~~~gi~~~rl~-~~Gygd~~P~~~n~t~e~ra~NR 220 (230)
T PRK06925 142 VLLKTIPNDIQVEGHTDSRPISTYRYPSNWELSAARASSVIRYFTSKEKLDSSRFI-AVGYADTKPVKDNKTEEHMKENR 220 (230)
T ss_pred HHHHCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHEE-EEEECCCCCCCCCCCCCHHHCCC
T ss_conf 99973996389987448765555678853899999999999999983599846789-98765787489995832032188
Q ss_pred EEEEEEECC
Q ss_conf 599999569
Q gi|254780529|r 333 RIDILVEDR 341 (343)
Q Consensus 333 RVEi~i~~~ 341 (343)
T Consensus 221 RVeI~i~~e 229 (230)
T PRK06925 221 RVEIVIKKQ 229 (230)
T ss_pred CEEEEEECC
T ss_conf 679998458