HHsearch alignment for GI: 254780529 and conserved domain: PRK07734

>PRK07734 motB flagellar motor protein MotB; Reviewed.
Probab=100.00  E-value=0  Score=412.43  Aligned_cols=246  Identities=23%  Similarity=0.378  Sum_probs=178.4

Q ss_pred             EEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             98216888878874318879999999999999999975089999999999853554320366555555567677666665
Q gi|254780529|r   18 KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNK   97 (343)
Q Consensus        18 kr~~~~~~~~~~~~~W~vtyAD~~TlLmaFFvll~s~s~~d~~k~~~i~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (343)
T Consensus         4 rr~kk~~~~~~~~~~WlvtyADlmTLLlaFFVlL~s~S~~d~~k~~~~a~s~~~~f~----~~~g~~~~~~~~~~~~~~~   79 (259)
T PRK07734          4 RKKKKKKHEEHVDESWLIPYADLLTLLLALFIVLFAMSSIDAAKFKQMAVAFNSVFT----GGTGNKEFLSDQKPNDEKE   79 (259)
T ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHC----CCCCCCCCCCCCCCCCCCC
T ss_conf             556778777899971487999999999999999999764899999999999998742----7877555677778776655


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCC
Q ss_conf             54445556676665656677665544321122211123321111122222334322222220012321001110012465
Q gi|254780529|r   98 IDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPP  177 (343)
Q Consensus        98 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (343)
T Consensus        80 ------------------~~~~----------------------------~~~---------------------~~~~~~   92 (259)
T PRK07734         80 ------------------LSAS----------------------------SLE---------------------QEEAKK   92 (259)
T ss_pred             ------------------CCCC----------------------------CCC---------------------CCCCHH
T ss_conf             ------------------5667----------------------------743---------------------221000


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             21357887888999999999999997555332101311451145349999703456745556875468356565443678
Q gi|254780529|r  178 LSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE  257 (343)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~~~~~i~I~i~d~~~~~lF~~gsa~l~~~~~~~l~~ia~  257 (343)
T Consensus        93 ~~~~~~~~~~~~~~l~~~~~~l~~~l~~~---~l~~~v~v~~~~~Gl~I~l~~~---~lF~~GsA~l~~~~~~lL~~ia~  166 (259)
T PRK07734         93 QAEAREKKKKEMEELKAVQKKIDQYIKEK---QLSSSLQTKLTEEGLLVTILDN---ILFDSGKADVRLEDLPLAKEMSN  166 (259)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCCCCEEEEECCCEEEEEECCC---CCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             11100345788999999999999999863---2036537997488379995377---66688987569779999999999


Q ss_pred             HHHHCCC-CEEEEEEECCCCCCCCC-CCHHHHHHHHHHHHHHHHHH-CCCCHHHEEEEEECCCCCCCCCCCCCC--CCCC
Q ss_conf             9861278-33898731467667874-10699999999999999998-699965712256303348888988521--3375
Q gi|254780529|r  258 VLAHSTE-VISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASDPMN--SANR  332 (343)
Q Consensus       258 ~l~~~~~-~i~IeGHTD~~p~~g~~-~~Nw~LS~~RA~aV~~~L~~-~Gv~~~ri~~v~G~g~~~P~~~n~t~~--~~NR  332 (343)
T Consensus       167 ~l~~~~~~~I~V~GHTD~~Pi~~~~~~sNWeLSaaRA~sV~~~L~~~~gi~~~rl~-v~G~gd~~Pi~~n~t~egra~NR  245 (259)
T PRK07734        167 LLVSNPPRNITISGHTDNVPIANAQFASNWELSVMRAVNFMQVLLENKELDPEKFS-AKGYGEYKPIASNDTAEGRAKNR  245 (259)
T ss_pred             HHHHCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEE-EEEECCCCCCCCCCCCCHHHCCC
T ss_conf             99857996389998557766667767644899999999999999981699956799-99855787489996920142178


Q ss_pred             EEEEEEECC
Q ss_conf             599999569
Q gi|254780529|r  333 RIDILVEDR  341 (343)
Q Consensus       333 RVEi~i~~~  341 (343)
T Consensus       246 RVeI~il~~  254 (259)
T PRK07734        246 RVEVLILPL  254 (259)
T ss_pred             CEEEEEECC
T ss_conf             679999576