HHsearch alignment for GI: 254780529 and conserved domain: PRK07734
>PRK07734 motB flagellar motor protein MotB; Reviewed.
Probab=100.00 E-value=0 Score=412.43 Aligned_cols=246 Identities=23% Similarity=0.378 Sum_probs=178.4
Q ss_pred EEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 98216888878874318879999999999999999975089999999999853554320366555555567677666665
Q gi|254780529|r 18 KKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNK 97 (343)
Q Consensus 18 kr~~~~~~~~~~~~~W~vtyAD~~TlLmaFFvll~s~s~~d~~k~~~i~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (343)
T Consensus 4 rr~kk~~~~~~~~~~WlvtyADlmTLLlaFFVlL~s~S~~d~~k~~~~a~s~~~~f~----~~~g~~~~~~~~~~~~~~~ 79 (259)
T PRK07734 4 RKKKKKKHEEHVDESWLIPYADLLTLLLALFIVLFAMSSIDAAKFKQMAVAFNSVFT----GGTGNKEFLSDQKPNDEKE 79 (259)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHC----CCCCCCCCCCCCCCCCCCC
T ss_conf 556778777899971487999999999999999999764899999999999998742----7877555677778776655
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCC
Q ss_conf 54445556676665656677665544321122211123321111122222334322222220012321001110012465
Q gi|254780529|r 98 IDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPP 177 (343)
Q Consensus 98 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (343)
T Consensus 80 ------------------~~~~----------------------------~~~---------------------~~~~~~ 92 (259)
T PRK07734 80 ------------------LSAS----------------------------SLE---------------------QEEAKK 92 (259)
T ss_pred ------------------CCCC----------------------------CCC---------------------CCCCHH
T ss_conf ------------------5667----------------------------743---------------------221000
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 21357887888999999999999997555332101311451145349999703456745556875468356565443678
Q gi|254780529|r 178 LSKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGE 257 (343)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~~~~~i~I~i~d~~~~~lF~~gsa~l~~~~~~~l~~ia~ 257 (343)
T Consensus 93 ~~~~~~~~~~~~~~l~~~~~~l~~~l~~~---~l~~~v~v~~~~~Gl~I~l~~~---~lF~~GsA~l~~~~~~lL~~ia~ 166 (259)
T PRK07734 93 QAEAREKKKKEMEELKAVQKKIDQYIKEK---QLSSSLQTKLTEEGLLVTILDN---ILFDSGKADVRLEDLPLAKEMSN 166 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCCCCEEEEECCCEEEEEECCC---CCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 11100345788999999999999999863---2036537997488379995377---66688987569779999999999
Q ss_pred HHHHCCC-CEEEEEEECCCCCCCCC-CCHHHHHHHHHHHHHHHHHH-CCCCHHHEEEEEECCCCCCCCCCCCCC--CCCC
Q ss_conf 9861278-33898731467667874-10699999999999999998-699965712256303348888988521--3375
Q gi|254780529|r 258 VLAHSTE-VISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASDPMN--SANR 332 (343)
Q Consensus 258 ~l~~~~~-~i~IeGHTD~~p~~g~~-~~Nw~LS~~RA~aV~~~L~~-~Gv~~~ri~~v~G~g~~~P~~~n~t~~--~~NR 332 (343)
T Consensus 167 ~l~~~~~~~I~V~GHTD~~Pi~~~~~~sNWeLSaaRA~sV~~~L~~~~gi~~~rl~-v~G~gd~~Pi~~n~t~egra~NR 245 (259)
T PRK07734 167 LLVSNPPRNITISGHTDNVPIANAQFASNWELSVMRAVNFMQVLLENKELDPEKFS-AKGYGEYKPIASNDTAEGRAKNR 245 (259)
T ss_pred HHHHCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEE-EEEECCCCCCCCCCCCCHHHCCC
T ss_conf 99857996389998557766667767644899999999999999981699956799-99855787489996920142178
Q ss_pred EEEEEEECC
Q ss_conf 599999569
Q gi|254780529|r 333 RIDILVEDR 341 (343)
Q Consensus 333 RVEi~i~~~ 341 (343)
T Consensus 246 RVeI~il~~ 254 (259)
T PRK07734 246 RVEVLILPL 254 (259)
T ss_pred CEEEEEECC
T ss_conf 679999576