HHsearch alignment for GI: 254780529 and conserved domain: PRK08457
>PRK08457 motB flagellar motor protein MotB; Reviewed.
Probab=100.00 E-value=0 Score=398.83 Aligned_cols=223 Identities=21% Similarity=0.429 Sum_probs=157.1
Q ss_pred EECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 82168888788743188799999999999999999750899999999998535543203665555555676776666655
Q gi|254780529|r 19 KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKI 98 (343)
Q Consensus 19 r~~~~~~~~~~~~~W~vtyAD~~TlLmaFFvll~s~s~~d~~k~~~i~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (343)
T Consensus 3 kkkk~~e~~~g-~~WlvTYADlmTLLlaFFVlL~smS~~d~~k~~~~~~s~~~~f~~~~--~-----------~~~~~~~ 68 (251)
T PRK08457 3 KKKKCPECPAG-EKWAVPYADFLSLLLALFIALYAISAVNKAKVEALKTEFIKIFDYAA--S-----------PTVKQPV 68 (251)
T ss_pred CCCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCC--C-----------CCCCCCC
T ss_conf 87778779999-61787899999999999999999863899999999999998605788--8-----------7667765
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCC
Q ss_conf 44455566766656566776655443211222111233211111222223343222222200123210011100124652
Q gi|254780529|r 99 DLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPL 178 (343)
Q Consensus 99 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (343)
T Consensus 69 ~~~-----~~~-------------------------------------------~~~~------------------~~~~ 82 (251)
T PRK08457 69 KTI-----KKD-------------------------------------------SGAE------------------EEEM 82 (251)
T ss_pred CCC-----CCC-------------------------------------------CCCC------------------CCCH
T ss_conf 557-----766-------------------------------------------6766------------------4202
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCC-HHHHHHHHHHHH
Q ss_conf 1357887888999999999999997555332101311451145349999703456745556875468-356565443678
Q gi|254780529|r 179 SKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL-PETIVVLQKIGE 257 (343)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~~~~~i~I~i~d~~~~~lF~~gsa~l~-~~~~~~l~~ia~ 257 (343)
T Consensus 83 ~~~~~-----~~-~~~~~~--~~~-------~~~~~~~i~~~~~gi~i~l~---~~~lF~~GsA~l~~~~~~~~L~~ia~ 144 (251)
T PRK08457 83 ASESS-----LK-ASQNTE--QKT-------IKREGAALDQSDNGVALKLP---SNLLFENGSAEIINQDMMLYLKRIAK 144 (251)
T ss_pred HHHHH-----HH-HHHHHH--HHH-------HHHHHHHHHCCCCCEEEEEC---CCCCCCCCCCEECCCCHHHHHHHHHH
T ss_conf 35554-----67-889999--999-------87530245403672699806---87545798801168039999999999
Q ss_pred HHHHCCC--CEEEEEEECCCCCCCC-CCCHHHHHHHHHHHHHHHHHHCCCCHHHEEEEEECCCCCCCCCCCCCCCCCCEE
Q ss_conf 9861278--3389873146766787-410699999999999999998699965712256303348888988521337559
Q gi|254780529|r 258 VLAHSTE--VISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRI 334 (343)
Q Consensus 258 ~l~~~~~--~i~IeGHTD~~p~~g~-~~~Nw~LS~~RA~aV~~~L~~~Gv~~~ri~~v~G~g~~~P~~~n~t~~~~NRRV 334 (343)
T Consensus 145 il~~lp~~~~I~V~GHTD~~Pi~~~~f~SNWELSaaRA~~V~r~Li~~Gi~p~Rl~-a~Gygd~~Pi~~N-e~ra~NRRV 222 (251)
T PRK08457 145 IIQKLPKRVKIEVRGYTDNSPLNKTRYKSSYELAANRAYNVMKVLIQYGINPNRLS-FSSYGSNNPIAPN-ENRLKNNRV 222 (251)
T ss_pred HHHHCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHEE-EEEECCCCCCCCC-CCHHHCCCE
T ss_conf 99848997459987158999777788887399999999999999998599878978-9853278879899-765563957
Q ss_pred EEEEECC
Q ss_conf 9999569
Q gi|254780529|r 335 DILVEDR 341 (343)
Q Consensus 335 Ei~i~~~ 341 (343)
T Consensus 223 eI~i~~~ 229 (251)
T PRK08457 223 EIFFKVD 229 (251)
T ss_pred EEEEECC
T ss_conf 9999428