HHsearch alignment for GI: 254780529 and conserved domain: PRK08457

>PRK08457 motB flagellar motor protein MotB; Reviewed.
Probab=100.00  E-value=0  Score=398.83  Aligned_cols=223  Identities=21%  Similarity=0.429  Sum_probs=157.1

Q ss_pred             EECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             82168888788743188799999999999999999750899999999998535543203665555555676776666655
Q gi|254780529|r   19 KKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQNPPERSSQNKI   98 (343)
Q Consensus        19 r~~~~~~~~~~~~~W~vtyAD~~TlLmaFFvll~s~s~~d~~k~~~i~~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (343)
T Consensus         3 kkkk~~e~~~g-~~WlvTYADlmTLLlaFFVlL~smS~~d~~k~~~~~~s~~~~f~~~~--~-----------~~~~~~~   68 (251)
T PRK08457          3 KKKKCPECPAG-EKWAVPYADFLSLLLALFIALYAISAVNKAKVEALKTEFIKIFDYAA--S-----------PTVKQPV   68 (251)
T ss_pred             CCCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCC--C-----------CCCCCCC
T ss_conf             87778779999-61787899999999999999999863899999999999998605788--8-----------7667765


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCC
Q ss_conf             44455566766656566776655443211222111233211111222223343222222200123210011100124652
Q gi|254780529|r   99 DLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPL  178 (343)
Q Consensus        99 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (343)
T Consensus        69 ~~~-----~~~-------------------------------------------~~~~------------------~~~~   82 (251)
T PRK08457         69 KTI-----KKD-------------------------------------------SGAE------------------EEEM   82 (251)
T ss_pred             CCC-----CCC-------------------------------------------CCCC------------------CCCH
T ss_conf             557-----766-------------------------------------------6766------------------4202


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCC-HHHHHHHHHHHH
Q ss_conf             1357887888999999999999997555332101311451145349999703456745556875468-356565443678
Q gi|254780529|r  179 SKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPL-PETIVVLQKIGE  257 (343)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~~~~~i~I~i~d~~~~~lF~~gsa~l~-~~~~~~l~~ia~  257 (343)
T Consensus        83 ~~~~~-----~~-~~~~~~--~~~-------~~~~~~~i~~~~~gi~i~l~---~~~lF~~GsA~l~~~~~~~~L~~ia~  144 (251)
T PRK08457         83 ASESS-----LK-ASQNTE--QKT-------IKREGAALDQSDNGVALKLP---SNLLFENGSAEIINQDMMLYLKRIAK  144 (251)
T ss_pred             HHHHH-----HH-HHHHHH--HHH-------HHHHHHHHHCCCCCEEEEEC---CCCCCCCCCCEECCCCHHHHHHHHHH
T ss_conf             35554-----67-889999--999-------87530245403672699806---87545798801168039999999999


Q ss_pred             HHHHCCC--CEEEEEEECCCCCCCC-CCCHHHHHHHHHHHHHHHHHHCCCCHHHEEEEEECCCCCCCCCCCCCCCCCCEE
Q ss_conf             9861278--3389873146766787-410699999999999999998699965712256303348888988521337559
Q gi|254780529|r  258 VLAHSTE--VISIRGHTDASPFRNI-ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRI  334 (343)
Q Consensus       258 ~l~~~~~--~i~IeGHTD~~p~~g~-~~~Nw~LS~~RA~aV~~~L~~~Gv~~~ri~~v~G~g~~~P~~~n~t~~~~NRRV  334 (343)
T Consensus       145 il~~lp~~~~I~V~GHTD~~Pi~~~~f~SNWELSaaRA~~V~r~Li~~Gi~p~Rl~-a~Gygd~~Pi~~N-e~ra~NRRV  222 (251)
T PRK08457        145 IIQKLPKRVKIEVRGYTDNSPLNKTRYKSSYELAANRAYNVMKVLIQYGINPNRLS-FSSYGSNNPIAPN-ENRLKNNRV  222 (251)
T ss_pred             HHHHCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHEE-EEEECCCCCCCCC-CCHHHCCCE
T ss_conf             99848997459987158999777788887399999999999999998599878978-9853278879899-765563957


Q ss_pred             EEEEECC
Q ss_conf             9999569
Q gi|254780529|r  335 DILVEDR  341 (343)
Q Consensus       335 Ei~i~~~  341 (343)
T Consensus       223 eI~i~~~  229 (251)
T PRK08457        223 EIFFKVD  229 (251)
T ss_pred             EEEEECC
T ss_conf             9999428