HHsearch alignment for GI: 254780529 and conserved domain: PRK08944
>PRK08944 motB flagellar motor protein MotB; Reviewed.
Probab=100.00 E-value=0 Score=429.90 Aligned_cols=287 Identities=20% Similarity=0.295 Sum_probs=183.0
Q ss_pred ECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCC-CCCCCCCCCCCCCCCCC
Q ss_conf 21688887887431887999999999999999997508999999999985355432036655-55555676776666655
Q gi|254780529|r 20 KVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASK-GIFDEQNPPERSSQNKI 98 (343)
Q Consensus 20 ~~~~~~~~~~~~~W~vtyAD~~TlLmaFFvll~s~s~~d~~k~~~i~~~f~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 98 (343)
T Consensus 3 ~~~~~c~p~g~paW~vaYADfmTlLmAFFvlL~~~S~~d~~k~~~ia~s~~~afg~~~~~~~~~~~~G~s~i~------- 75 (305)
T PRK08944 3 EKKCKCPPPGLPAWLATFADLMSLLMCFFVLLLSFSEMDVLKFKQIAGSMKFAFGVQNKVEVKDIPKGTSVIA------- 75 (305)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC-------
T ss_conf 5568997799950898999999999999999998623899999999999998635556566566788865334-------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCC
Q ss_conf 44455566766656566776655443211222111233211111222223343222222200123210011100124652
Q gi|254780529|r 99 DLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSINKEENYFLPPL 178 (343)
Q Consensus 99 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (343)
T Consensus 76 -----~~~~p~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~--~~~~~~~~~~~~~~~ 133 (305)
T PRK08944 76 -----QEFRPGRPEPTPIEVIMQQTNEMTQPTLEFQAGESD---------------SAGGTQQ--QRGKQRGGEASATAQ 133 (305)
T ss_pred -----CCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCC---------------CCCCCCC--CCCCCCCCCCCHHHH
T ss_conf -----456788988873112104565555553112355544---------------5442101--110001332100345
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 13578878889999999999999975553321013114511453499997034567455568754683565654436789
Q gi|254780529|r 179 SKEKILAMKRKKRLQDLAKKISSTLSGLVADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEV 258 (343)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~~~~~i~I~i~d~~~~~lF~~gsa~l~~~~~~~l~~ia~~ 258 (343)
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~i---~~~~v~v~~~~~~i~I~l~d---~~lF~~GSa~l~p~~~~lL~~ia~~ 207 (305)
T PRK08944 134 ETAQAVSAAAQEQINELVKKIAQQLEKEI---EDGAIEIESLGQQIIIRIRE---KGSFPSGSAFLQPKFKPLVRKIGEL 207 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCCCEEEEECCCEEEEEECC---CCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 55566788899999999999999999753---13763799738879999568---7675788642487689999999999
Q ss_pred HHHCCCCEEEEEEECCCCCCCCC-CCHHHHHHHHHHHHHHHHHH-CCCCHHHEEEEEECCCCCCCCCCCCCC--CCCCEE
Q ss_conf 86127833898731467667874-10699999999999999998-699965712256303348888988521--337559
Q gi|254780529|r 259 LAHSTEVISIRGHTDASPFRNIA-RDNWRLSLDRAYSAYQVLMK-SGVSEDRISKISGFAHHRLKIASDPMN--SANRRI 334 (343)
Q Consensus 259 l~~~~~~i~IeGHTD~~p~~g~~-~~Nw~LS~~RA~aV~~~L~~-~Gv~~~ri~~v~G~g~~~P~~~n~t~~--~~NRRV 334 (343)
T Consensus 208 l~~~~n~I~I~GHTD~~p~~~~~~~sNWeLSaaRA~~v~r~L~~~~gi~~~rl-~v~G~ad~~Pl~~n~t~e~ra~NRRV 286 (305)
T PRK08944 208 LKDVPGIITVSGHTDNMPISSELYRSNWDLSSARAVAVAHELLKVKGFDPSRL-KVVGMADTQPLVPNDSPENRARNRRV 286 (305)
T ss_pred HHCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEE-EEEEECCCCCCCCCCCHHHHHCCCCE
T ss_conf 97389627997415777665556787489999999999999998069894348-99986578748999780134118877
Q ss_pred EEEEECCC
Q ss_conf 99995699
Q gi|254780529|r 335 DILVEDRQ 342 (343)
Q Consensus 335 Ei~i~~~~ 342 (343)
T Consensus 287 eI~il~~~ 294 (305)
T PRK08944 287 EISIEQGK 294 (305)
T ss_pred EEEEECCC
T ss_conf 99993798