HHsearch alignment for GI: 254780529 and conserved domain: PRK09041
>PRK09041 motB flagellar motor protein MotB; Validated.
Probab=100.00 E-value=0 Score=485.98 Aligned_cols=272 Identities=30% Similarity=0.510 Sum_probs=195.4
Q ss_pred CCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 37688689998216888878874318879999999999999999975089999999999853554320366555555567
Q gi|254780529|r 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFNPFGKNLMTASKGIFDEQN 88 (343)
Q Consensus 9 ~~~~~~~iikr~~~~~~~~~~~~~W~vtyAD~~TlLmaFFvll~s~s~~d~~k~~~i~~~f~p~~~~~~~~~~~~~~~~~ 88 (343)
T Consensus 3 ~~~~~~IIiKr~k~-~~~~hHgGaWkVaYADFmTamMAFFvvmw~is~~d~~k~k~iA~yF~~p~~~~~~~g~~~~~~~~ 81 (317)
T PRK09041 3 KENNRPIVVKRRKK-QGGGHHGGSWKIAYADFMTAMMAFFLVMWLLSSSTPEQLIGIAEYFRTPLKVALTGGDRSSNSPS 81 (317)
T ss_pred CCCCCCEEEEECCC-CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 88999779996268-88899897048789999999999999999962799999999999874115665037766678887
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCC
Q ss_conf 67766666554445556676665656677665544321122211123321111122222334322222220012321001
Q gi|254780529|r 89 PPERSSQNKIDLSIDEHITKNSVDLKIGSTNQKKQYQRLENNIFYLSNSQQSEHCKNSLTRDSEKGKDLCKSTDLEKSIN 168 (343)
Q Consensus 89 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (343)
T Consensus 82 ~~~-----------------------~~g~~~~~~~~--------------------~~~-~~~~~-------------- 103 (317)
T PRK09041 82 PIP-----------------------GGGDDYTQKDG--------------------EVN-KQTKP-------------- 103 (317)
T ss_pred CCC-----------------------CCCCCCCCCCC--------------------CCC-CCCCC--------------
T ss_conf 667-----------------------99987655556--------------------657-66677--------------
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHH
Q ss_conf 11001246521357887888999999999999997555-33210131145114534999970345674555687546835
Q gi|254780529|r 169 KEENYFLPPLSKEKILAMKRKKRLQDLAKKISSTLSGL-VADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPE 247 (343)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~v~~~~~~i~I~i~d~~~~~lF~~gsa~l~~~ 247 (343)
T Consensus 104 ---~~~~~~~~~~~~~~~~e~~~l~~l~~~l~~~i~~~~~l~~l~~~v~v~~t~~GL~I~I~D~~~~~mF~sGSA~l~p~ 180 (317)
T PRK09041 104 ---TKSLNAPQAEELKERMEQERLEKLKQELDQAIESNPKLRQFKPQLLIDLTQEGLRIQIVDSQNRPMFATGSAEVEPY 180 (317)
T ss_pred ---CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCEEEEEEECCCCCCCCCCCCCCCHH
T ss_conf ---66554201345788899999999999999998744667764114479980694599998667786767886645888
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCC--CCCHHHHHHHHHHHHHHHHHHCCCCHHHEEEEEECCCCCCCCCCC
Q ss_conf 656544367898612783389873146766787--410699999999999999998699965712256303348888988
Q gi|254780529|r 248 TIVVLQKIGEVLAHSTEVISIRGHTDASPFRNI--ARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD 325 (343)
Q Consensus 248 ~~~~l~~ia~~l~~~~~~i~IeGHTD~~p~~g~--~~~Nw~LS~~RA~aV~~~L~~~Gv~~~ri~~v~G~g~~~P~~~n~ 325 (343)
T Consensus 181 ~~~lL~~Ia~vL~~~~n~I~I~GHTD~~P~~~~~~~~SNWeLSaaRA~aarr~L~~~Gl~~~Ri~~V~G~AD~~Pl~~~d 260 (317)
T PRK09041 181 MRDILREIAPVLNDVPNRISLSGHTDATPYAGGEKGYSNWELSADRANASRRELVAGGMDEGKVLRVVGLASTMLLDKKD 260 (317)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHEEEEEEECCCCCCCCCC
T ss_conf 99999999999972578569987558777567888899515589999999999998499976878999835677589999
Q ss_pred CCCCCCCEEEEEEECCC
Q ss_conf 52133755999995699
Q gi|254780529|r 326 PMNSANRRIDILVEDRQ 342 (343)
Q Consensus 326 t~~~~NRRVEi~i~~~~ 342 (343)
T Consensus 261 P~~a~NRRI~I~vLt~~ 277 (317)
T PRK09041 261 PLNPVNRRISIVVLNKK 277 (317)
T ss_pred CCCCCCCCEEEEEECHH
T ss_conf 87654685799997859