HHsearch alignment for GI: 254780529 and conserved domain: cd07185

>cd07185 OmpA_C-like Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA. OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.
Probab=99.90  E-value=1.6e-23  Score=176.20  Aligned_cols=100  Identities=33%  Similarity=0.467  Sum_probs=93.9

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHEEEEE
Q ss_conf             455568754683565654436789861278-3389873146766787410699999999999999998699965712256
Q gi|254780529|r  235 PMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS  313 (343)
Q Consensus       235 ~lF~~gsa~l~~~~~~~l~~ia~~l~~~~~-~i~IeGHTD~~p~~g~~~~Nw~LS~~RA~aV~~~L~~~Gv~~~ri~~v~  313 (343)
T Consensus         4 v~F~~~s~~l~~~~~~~L~~ia~~l~~~~~~~v~v~GhtD~~---G~~~~N~~LS~~RA~~V~~~L~~~Gi~~~ri~-~~   79 (106)
T cd07185           4 IYFDFGSAELTPEAKPLLDKLAEVLKKNPDAKIRIEGHTDSR---GSDAYNQELSERRAEAVADYLVSKGVDASRIT-AV   79 (106)
T ss_pred             EEECCCCCEECHHHHHHHHHHHHHHHHCCCCEEEEEEEECCC---CCHHHHHHHHHHHHHHHHHHHHHCCCCHHHEE-EE
T ss_conf             996899776198899999999999985899379999984899---99899899999999999999998499989989-99


Q ss_pred             ECCCCCCCCCCCCC--CCCCCEEEEEE
Q ss_conf             30334888898852--13375599999
Q gi|254780529|r  314 GFAHHRLKIASDPM--NSANRRIDILV  338 (343)
Q Consensus       314 G~g~~~P~~~n~t~--~~~NRRVEi~i  338 (343)
T Consensus        80 g~G~~~p~~~~~~~~~~~~NRRVei~~  106 (106)
T cd07185          80 GYGESRPIASNDTEEGRAKNRRVEIVI  106 (106)
T ss_pred             EECCCCCCCCCCCHHHHHHCCCEEEEC
T ss_conf             975557689990988998559889969