HHsearch alignment for GI: 254780529 and conserved domain: cd07185
>cd07185 OmpA_C-like Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA. OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.
Probab=99.90 E-value=1.6e-23 Score=176.20 Aligned_cols=100 Identities=33% Similarity=0.467 Sum_probs=93.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHEEEEE
Q ss_conf 455568754683565654436789861278-3389873146766787410699999999999999998699965712256
Q gi|254780529|r 235 PMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313 (343)
Q Consensus 235 ~lF~~gsa~l~~~~~~~l~~ia~~l~~~~~-~i~IeGHTD~~p~~g~~~~Nw~LS~~RA~aV~~~L~~~Gv~~~ri~~v~ 313 (343)
T Consensus 4 v~F~~~s~~l~~~~~~~L~~ia~~l~~~~~~~v~v~GhtD~~---G~~~~N~~LS~~RA~~V~~~L~~~Gi~~~ri~-~~ 79 (106)
T cd07185 4 IYFDFGSAELTPEAKPLLDKLAEVLKKNPDAKIRIEGHTDSR---GSDAYNQELSERRAEAVADYLVSKGVDASRIT-AV 79 (106)
T ss_pred EEECCCCCEECHHHHHHHHHHHHHHHHCCCCEEEEEEEECCC---CCHHHHHHHHHHHHHHHHHHHHHCCCCHHHEE-EE
T ss_conf 996899776198899999999999985899379999984899---99899899999999999999998499989989-99
Q ss_pred ECCCCCCCCCCCCC--CCCCCEEEEEE
Q ss_conf 30334888898852--13375599999
Q gi|254780529|r 314 GFAHHRLKIASDPM--NSANRRIDILV 338 (343)
Q Consensus 314 G~g~~~P~~~n~t~--~~~NRRVEi~i 338 (343)
T Consensus 80 g~G~~~p~~~~~~~~~~~~NRRVei~~ 106 (106)
T cd07185 80 GYGESRPIASNDTEEGRAKNRRVEIVI 106 (106)
T ss_pred EECCCCCCCCCCCHHHHHHCCCEEEEC
T ss_conf 975557689990988998559889969