HHsearch results for GI: 254780529 and protein with PDBid: 3khn_A
>3khn_A MOTB protein, putative; structural genomics, OMPA-like domain, PSI-2, protein structure initiative; 2.03A {Desulfovibrio vulgaris str}
Probab=99.96 E-value=1.3e-28 Score=208.73 Aligned_cols=129 Identities=19% Similarity=0.298 Sum_probs=112.7
Q ss_pred HHCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CEEEEEEECCCCC--CCCCCCHHH
Q ss_conf 1013114511453499997034567455568754683565654436789861278-3389873146766--787410699
Q gi|254780529|r 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPF--RNIARDNWR 286 (343)
Q Consensus 210 ~~~~~~~v~~~~~~i~I~i~d~~~~~lF~~gsa~l~~~~~~~l~~ia~~l~~~~~-~i~IeGHTD~~p~--~g~~~~Nw~ 286 (343)
.....+.+...+.++.|+|.+ .++|++||+.|++.++..|+.++.+|..+|. .|.|+||||+.+. .+.+.+||+
T Consensus 31 ~~~~~v~~~~~~~~~~i~l~~---~v~F~~gs~~L~~~~~~~L~~la~~l~~~~~~~i~I~GHTD~~~~~~~~~~~~N~~ 107 (174)
T 3khn_A 31 GVEGVIGAVFDEGVITLRVPS---EVLFAPGAVELAPGADRVLATLKDLFIRRREQNINIKGFTDDVQPSANARFKDNWE 107 (174)
T ss_dssp TCTTTCEEEEETTEEEEEEEH---HHHBCTTCCSBCTTHHHHHHHHHHHHHHTTTCEEEEEEECCSCCCCTTSSCSSHHH
T ss_pred CCCCCEEEEEECCEEEEEECC---CCEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCHHH
T ss_conf 466746999859989999358---84007997534976999999999999778995899999817877555667210478
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHEEEEEECCCCCCCCCCCCCC--CCCCEEEEEEECCC
Q ss_conf 999999999999998699965712256303348888988521--33755999995699
Q gi|254780529|r 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDRQ 342 (343)
Q Consensus 287 LS~~RA~aV~~~L~~~Gv~~~ri~~v~G~g~~~P~~~n~t~~--~~NRRVEi~i~~~~ 342 (343)
||++||.+|++||+..|+++.||. +.|||+++|+++|++.. .+||||||+|.++.
T Consensus 108 LS~~RA~aV~~~L~~~gi~~~ri~-~~g~G~~~P~~~n~~~~~~~~NRRVei~i~~~~ 164 (174)
T 3khn_A 108 VSALRSVNVLRYFLGAGIEPARLT-ATGLGELDPLFPNTSDENRARNRRVEFVLERRV 164 (174)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGEE-EEEEETSSCSSCSSSHHHHHHHSEEEEEEEC--
T ss_pred HHHHHHHHHHHHHHHCCCCHHEEE-EEEEECCCCCCCCCCHHHHHHCCCEEEEEEECC
T ss_conf 999999999999998499953399-999825677899929789987497899998534