Query gi|254780529|ref|YP_003064942.1| flagellar motor protein MotB [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 343
No_of_seqs 156 out of 4336
Neff 9.8
Searched_HMMs 23785
Date Tue May 31 20:18:53 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780529.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zov_A Chemotaxis protein MOTB 100.0 8E-33 3.4E-37 236.7 17.5 152 190-341 27-181 (210)
2 2zvy_A Chemotaxis protein MOTB 100.0 3.9E-32 1.6E-36 232.1 20.0 152 190-341 16-170 (183)
3 3khn_A MOTB protein, putative; 100.0 1.3E-28 5.3E-33 208.7 16.0 129 210-342 31-164 (174)
4 3ldt_A Outer membrane protein, 100.0 3.2E-28 1.3E-32 206.0 14.1 124 213-343 37-163 (169)
5 2k1s_A Inner membrane lipoprot 99.9 1.2E-26 5E-31 195.5 12.5 120 213-339 17-139 (149)
6 3cyp_B Chemotaxis protein MOTB 99.9 4E-25 1.7E-29 185.4 11.5 106 234-340 4-115 (138)
7 3oon_A Outer membrane protein 99.9 3.4E-24 1.4E-28 179.1 12.7 118 214-340 3-123 (123)
8 2kgw_A Outer membrane protein 99.9 1.5E-24 6.5E-29 181.4 10.6 103 233-339 24-129 (129)
9 1r1m_A Outer membrane protein 99.9 1.2E-24 5.1E-29 182.2 7.7 105 232-340 14-141 (164)
10 2zf8_A MOTY, component of sodi 99.9 2.7E-24 1.1E-28 179.8 8.1 105 234-342 163-271 (278)
11 2hqs_H Peptidoglycan-associate 99.9 1.3E-23 5.5E-28 175.2 10.3 108 230-341 3-113 (118)
12 2aiz_P Outer membrane protein 99.9 1.1E-22 4.4E-27 169.2 10.6 99 235-337 32-133 (134)
13 1svd_M Ribulose bisphosphate c 74.7 2.1 9E-05 20.4 3.2 95 235-342 11-110 (110)
14 1bwv_S Rubisco, protein (ribul 58.8 6.2 0.00026 17.3 3.0 48 224-274 33-88 (138)
15 2jwk_A Protein TOLR; periplasm 56.8 8.1 0.00034 16.6 5.0 67 224-304 5-73 (74)
16 1vfj_A Nitrogen regulatory pro 45.3 12 0.00051 15.4 4.3 52 290-341 11-68 (116)
17 2xbp_A Nitrogen regulatory pro 44.2 13 0.00053 15.3 3.3 52 290-341 11-68 (113)
18 2j9c_A GLNK1, hypothetical nit 43.1 13 0.00055 15.2 3.8 52 290-341 13-70 (119)
19 2o66_A PII protein; regulation 42.8 13 0.00056 15.1 3.7 51 291-341 24-81 (135)
20 1wdd_S Ribulose bisphosphate c 41.5 12 0.00051 15.4 2.2 96 236-343 11-121 (128)
21 3mhy_A PII-like protein PZ; PI 41.3 14 0.00059 15.0 4.0 51 291-341 12-68 (112)
22 2gw8_A PII signal transduction 40.9 14 0.0006 14.9 3.6 51 291-341 14-70 (114)
23 3aaf_A Werner syndrome ATP-dep 39.2 15 0.00063 14.8 2.8 76 237-321 7-95 (134)
24 2ns1_B Nitrogen regulatory pro 39.0 15 0.00064 14.7 3.2 52 290-341 15-72 (116)
25 2qt7_A Receptor-type tyrosine- 37.2 16 0.00068 14.6 3.1 69 245-318 16-90 (91)
26 3ce8_A Putative PII-like nitro 34.9 17 0.00073 14.3 2.8 31 293-323 36-67 (120)
27 3d55_A Antitoxin, uncharacteri 34.9 12 0.00053 15.3 1.4 48 9-70 20-67 (91)
28 2eg2_A Nitrogen regulatory pro 34.7 18 0.00074 14.3 3.0 52 290-341 11-68 (112)
29 3bzq_A Nitrogen regulatory pro 34.5 18 0.00075 14.3 4.1 52 291-342 14-71 (114)
30 1bxn_I Rubisco, protein (ribul 33.4 9.2 0.00039 16.2 0.5 39 236-274 42-88 (139)
31 3ncq_A Nitrogen regulatory pro 31.5 20 0.00083 14.0 4.1 51 291-341 12-68 (119)
32 2cz4_A Hypothetical protein TT 25.1 26 0.0011 13.2 4.2 46 292-339 37-82 (119)
33 1skh_A Major prion protein 2; 25.0 26 0.0011 13.2 1.7 11 44-54 10-20 (30)
34 1itk_A Catalase-peroxidase; he 24.9 18 0.00074 14.3 0.8 12 33-44 145-156 (731)
35 1hwu_A PII protein; herbaspiri 22.2 29 0.0012 12.9 3.2 51 291-341 12-68 (112)
36 2wwb_C SEC61BETA, protein tran 20.2 32 0.0013 12.6 2.2 13 40-52 75-87 (96)
No 1
>2zov_A Chemotaxis protein MOTB; 2-layer sandwich, bacterial flagellum, cell projection, flagellar rotation, inner membrane, membrane; 2.00A {Salmonella typhimurium}
Probab=100.00 E-value=8e-33 Score=236.71 Aligned_cols=152 Identities=29% Similarity=0.455 Sum_probs=127.9
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 999999999999975553-3210131145114534999970345674555687546835656544367898612783389
Q gi|254780529|r 190 KRLQDLAKKISSTLSGLV-ADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI 268 (343)
Q Consensus 190 ~~~~~~~~~i~~~~~~~~-~~~~~~~~~v~~~~~~i~I~i~d~~~~~lF~~gsa~l~~~~~~~l~~ia~~l~~~~~~i~I 268 (343)
..+..+...+...+.... .......+.++..+.++.|+|.+....+||.+||+.|++.++.+|.+||.+|+.+|+.|.|
T Consensus 27 ~~l~~l~~~l~~~~~~~~~~~~~~~~~~i~~~~~gl~i~i~d~~~~vlF~~gsa~l~~~~~~~L~~ia~~l~~~p~~i~I 106 (210)
T 2zov_A 27 SRLNKLRGDLDQLIESDPKLRALRPHLKIDLVQEGLRIQIIDSQNRPMFKTGSAEVEPYMRDILRAIAPVLNGIPNRISL 106 (210)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHGGGEEEEEETTEEEEEEECCSSSCSBCTTSCCBCHHHHHHHHHHHHHHTTSCCCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 99999999999999870988865237358981695189998489984768997435988999999999999735856999
Q ss_pred EEEECCCCCCC--CCCCHHHHHHHHHHHHHHHHHHCCCCHHHEEEEEECCCCCCCCCCCCCCCCCCEEEEEEECC
Q ss_conf 87314676678--74106999999999999999986999657122563033488889885213375599999569
Q gi|254780529|r 269 RGHTDASPFRN--IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDR 341 (343)
Q Consensus 269 eGHTD~~p~~g--~~~~Nw~LS~~RA~aV~~~L~~~Gv~~~ri~~v~G~g~~~P~~~n~t~~~~NRRVEi~i~~~ 341 (343)
+||||++|+.+ .+++||+||++||.+|++||+..|+++.|+++|.|||+++|+++|++.+++||||||+|...
T Consensus 107 ~GHTD~~~~~~~~~~~sN~~LS~~RA~aV~~~L~~~g~~~~~~l~v~G~G~~~P~~~~~~~~a~NRRVEI~il~~ 181 (210)
T 2zov_A 107 AGHTDDFPYANGEKGYSNWELSADRANASRRELVAGGLDNGKVLRVVGMAATMRLSDRGPDDAINRRISLLVLNK 181 (210)
T ss_dssp EEEEECSCCCSSCSSCCHHHHHHHHHHHHHHHHHHTTCCTTCEEEEEEECCC---------CCCEEEEEEEEECH
T ss_pred EEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCHHHCCCEEEEEECC
T ss_conf 986488764457764306789999999999999985998045899998678878997996648729889999785
No 2
>2zvy_A Chemotaxis protein MOTB; 2-layer sandwich, bacterial flagellum, cell inner membrane, cell membrane, flagellar rotation, membrane; 1.75A {Salmonella typhimurium} PDB: 2zvz_A
Probab=100.00 E-value=3.9e-32 Score=232.10 Aligned_cols=152 Identities=29% Similarity=0.455 Sum_probs=128.7
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 99999999999997555-33210131145114534999970345674555687546835656544367898612783389
Q gi|254780529|r 190 KRLQDLAKKISSTLSGL-VADNIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISI 268 (343)
Q Consensus 190 ~~~~~~~~~i~~~~~~~-~~~~~~~~~~v~~~~~~i~I~i~d~~~~~lF~~gsa~l~~~~~~~l~~ia~~l~~~~~~i~I 268 (343)
..++.+...+...+... ........+.++....|++|+|.+..+.+||++||+.|+|.++.+|+++|.+|+..|+.|.|
T Consensus 16 ~~l~~l~~~l~~~~~~~~~~~~~~~~i~i~~~~~gl~i~i~~~~~~~lF~~gsa~l~~~~~~~L~~ia~~l~~~~~~i~I 95 (183)
T 2zvy_A 16 SRLNKLRGDLDQLIESDPKLRALRPHLKIDLVQEGLRIQIIDSQNRPMFKTGSAEVEPYMRDILRAIAPVLNGIPNRISL 95 (183)
T ss_dssp HHHHHHHHHHHHHHHHSHHHHTTGGGEEEEEETTEEEEEEECCSSSCSBCTTCCSBCHHHHHHHHHHHHHHTTSCCCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 99999999999999874988754206258980796189998689986869997336987999999999999734866999
Q ss_pred EEEECCCCCCC--CCCCHHHHHHHHHHHHHHHHHHCCCCHHHEEEEEECCCCCCCCCCCCCCCCCCEEEEEEECC
Q ss_conf 87314676678--74106999999999999999986999657122563033488889885213375599999569
Q gi|254780529|r 269 RGHTDASPFRN--IARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDR 341 (343)
Q Consensus 269 eGHTD~~p~~g--~~~~Nw~LS~~RA~aV~~~L~~~Gv~~~ri~~v~G~g~~~P~~~n~t~~~~NRRVEi~i~~~ 341 (343)
+||||++|+.. .+++||+||.+||.+|++||+..|+++.|++++.|||+++|+.+|++.+++||||||+|.+.
T Consensus 96 ~GHTD~~~~~~~~~~~~N~~LS~~RA~aV~~~L~~~Gv~~~r~l~~~G~g~~~p~~~~~~~~~~NRRVeI~il~~ 170 (183)
T 2zvy_A 96 AGHTDDFPYANGEKGYSNWELSADRANASRRELVAGGLDNGKVLRVVGMAATMRLSDRGPDDAINRRISLLVLNK 170 (183)
T ss_dssp EEECCSSCTTCSTTSSCHHHHHHHHHHHHHHHHHHTTCCTTCEEEEEECTTTTCSSCSSTTGGGGSEEEEEEECH
T ss_pred EEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCHHHHCCEEEEEECC
T ss_conf 986288775567764314689999999999999980899668899999577777998996206509889999896
No 3
>3khn_A MOTB protein, putative; structural genomics, OMPA-like domain, PSI-2, protein structure initiative; 2.03A {Desulfovibrio vulgaris str}
Probab=99.96 E-value=1.3e-28 Score=208.73 Aligned_cols=129 Identities=19% Similarity=0.298 Sum_probs=112.7
Q ss_pred HHCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CEEEEEEECCCCC--CCCCCCHHH
Q ss_conf 1013114511453499997034567455568754683565654436789861278-3389873146766--787410699
Q gi|254780529|r 210 NIVKGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPF--RNIARDNWR 286 (343)
Q Consensus 210 ~~~~~~~v~~~~~~i~I~i~d~~~~~lF~~gsa~l~~~~~~~l~~ia~~l~~~~~-~i~IeGHTD~~p~--~g~~~~Nw~ 286 (343)
.....+.+...+.++.|+|.+ .++|++||+.|++.++..|+.++.+|..+|. .|.|+||||+.+. .+.+.+||+
T Consensus 31 ~~~~~v~~~~~~~~~~i~l~~---~v~F~~gs~~L~~~~~~~L~~la~~l~~~~~~~i~I~GHTD~~~~~~~~~~~~N~~ 107 (174)
T 3khn_A 31 GVEGVIGAVFDEGVITLRVPS---EVLFAPGAVELAPGADRVLATLKDLFIRRREQNINIKGFTDDVQPSANARFKDNWE 107 (174)
T ss_dssp TCTTTCEEEEETTEEEEEEEH---HHHBCTTCCSBCTTHHHHHHHHHHHHHHTTTCEEEEEEECCSCCCCTTSSCSSHHH
T ss_pred CCCCCEEEEEECCEEEEEECC---CCEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCHHH
T ss_conf 466746999859989999358---84007997534976999999999999778995899999817877555667210478
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHEEEEEECCCCCCCCCCCCCC--CCCCEEEEEEECCC
Q ss_conf 999999999999998699965712256303348888988521--33755999995699
Q gi|254780529|r 287 LSLDRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDRQ 342 (343)
Q Consensus 287 LS~~RA~aV~~~L~~~Gv~~~ri~~v~G~g~~~P~~~n~t~~--~~NRRVEi~i~~~~ 342 (343)
||++||.+|++||+..|+++.||. +.|||+++|+++|++.. .+||||||+|.++.
T Consensus 108 LS~~RA~aV~~~L~~~gi~~~ri~-~~g~G~~~P~~~n~~~~~~~~NRRVei~i~~~~ 164 (174)
T 3khn_A 108 VSALRSVNVLRYFLGAGIEPARLT-ATGLGELDPLFPNTSDENRARNRRVEFVLERRV 164 (174)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGEE-EEEEETSSCSSCSSSHHHHHHHSEEEEEEEC--
T ss_pred HHHHHHHHHHHHHHHCCCCHHEEE-EEEEECCCCCCCCCCHHHHHHCCCEEEEEEECC
T ss_conf 999999999999998499953399-999825677899929789987497899998534
No 4
>3ldt_A Outer membrane protein, OMPA family protein; OMPA-like domain, PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.30A {Legionella pneumophila}
Probab=99.96 E-value=3.2e-28 Score=206.01 Aligned_cols=124 Identities=19% Similarity=0.217 Sum_probs=112.8
Q ss_pred CCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CEEEEEEECCCCCCCCCCCHHHHHHHH
Q ss_conf 3114511453499997034567455568754683565654436789861278-338987314676678741069999999
Q gi|254780529|r 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291 (343)
Q Consensus 213 ~~~~v~~~~~~i~I~i~d~~~~~lF~~gsa~l~~~~~~~l~~ia~~l~~~~~-~i~IeGHTD~~p~~g~~~~Nw~LS~~R 291 (343)
..+++....+.+.|.+ +..++|++||+.|++.++..|++++.+|+.+|+ .|.|+||||++ |...+||+||.+|
T Consensus 37 ~~v~v~~~~~~~~v~l---~~~v~F~~~s~~l~~~~~~~L~~ia~~L~~~p~~~i~I~GhTD~~---g~~~~N~~LS~~R 110 (169)
T 3ldt_A 37 QDIQYVEYGDTRTLII---PTDKYFMFSSPRLNEICYPGLNNVIRLLNFYPQSTIYVAGFTDNV---GSRSHKRKLSQAQ 110 (169)
T ss_dssp TTCEEEEETTEEEEEE---ETTTCCC-CCHHHHHHHCHHHHHHHHHHTTCTTSCEEEEEECTTS---CCC--CHHHHHHH
T ss_pred CCCEEEEECCEEEEEE---CCCCEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCC---CCHHHHHHHHHHH
T ss_conf 9937999699899990---688347299642698899999999999997899579999973898---9766757799999
Q ss_pred HHHHHHHHHHCCCCHHHEEEEEECCCCCCCCCCCCCC--CCCCEEEEEEECCCC
Q ss_conf 9999999998699965712256303348888988521--337559999956999
Q gi|254780529|r 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVEDRQG 343 (343)
Q Consensus 292 A~aV~~~L~~~Gv~~~ri~~v~G~g~~~P~~~n~t~~--~~NRRVEi~i~~~~~ 343 (343)
|.+|++||+..|+++.||. +.|||+++|+++|+|.+ ++||||||.|...+|
T Consensus 111 A~~V~~~L~~~Gv~~~ri~-~~G~G~~~Pv~~n~t~egra~NRRVei~i~~~~g 163 (169)
T 3ldt_A 111 AETMMTFLWANGIAAKRLK-AEGYGDKNAISDNAIIHGSAQNRRIEIQWFTSEG 163 (169)
T ss_dssp HHHHHHHHHHTTCCTTTEE-ECCTTCTTSCCCTTTSCGGGGTSEEEEEEECCCC
T ss_pred HHHHHHHHHHCCCCHHHEE-EEEECCCCCCCCCCCHHHHHHCCCEEEEEEECCC
T ss_conf 9999999998599979989-9997566867999398899854988999995898
No 5
>2k1s_A Inner membrane lipoprotein YIAD; abbababab, OMPA, alpha beta, palmitate, transmembrane, structural genomics, PSI-2; NMR {Escherichia coli K12}
Probab=99.94 E-value=1.2e-26 Score=195.52 Aligned_cols=120 Identities=27% Similarity=0.370 Sum_probs=110.2
Q ss_pred CCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CEEEEEEECCCCCCCCCCCHHHHHHHH
Q ss_conf 3114511453499997034567455568754683565654436789861278-338987314676678741069999999
Q gi|254780529|r 213 KGVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDR 291 (343)
Q Consensus 213 ~~~~v~~~~~~i~I~i~d~~~~~lF~~gsa~l~~~~~~~l~~ia~~l~~~~~-~i~IeGHTD~~p~~g~~~~Nw~LS~~R 291 (343)
..+.+...+++++|.+ .+.++|++||+.|++.+...|+.++..|+.+|. .|.|+||||++ |+..+||+||.+|
T Consensus 17 ~~v~v~~~~~~~~l~l---~~~v~F~~~s~~L~~~~~~~L~~ia~~L~~~~~~~i~I~GhtD~~---g~~~~N~~LS~~R 90 (149)
T 2k1s_A 17 TGVSVTRSGDNIILNM---PNNVTFDSSSATLKPAGANTLTGVAMVLKEYPKTAVNVIGYTDST---GGHDLNMRLSQQR 90 (149)
T ss_dssp TSCEEEEETTEEEEEE---EHHHHBSSSSSCBCHHHHHHHHHHHHHHHHCTTEEEEEEEECCCT---TCHHHHHHHHHHH
T ss_pred CCCEEEEECCEEEEEC---CCCCEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEECCC---CCHHHHHHHHHHH
T ss_conf 9967999799999986---874054299722698899999999999964899579999880786---8955736899999
Q ss_pred HHHHHHHHHHCCCCHHHEEEEEECCCCCCCCCCCCCC--CCCCEEEEEEE
Q ss_conf 9999999998699965712256303348888988521--33755999995
Q gi|254780529|r 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMN--SANRRIDILVE 339 (343)
Q Consensus 292 A~aV~~~L~~~Gv~~~ri~~v~G~g~~~P~~~n~t~~--~~NRRVEi~i~ 339 (343)
|.+|++||+..|++++||. +.|||+++|+++|+++. ++||||||+|.
T Consensus 91 A~~V~~~L~~~Gi~~~rl~-~~g~G~~~P~~~~~~~~~~~~NRRVei~i~ 139 (149)
T 2k1s_A 91 ADSVASALITQGVDASRIR-TQGLGPANPIASNSTAEGKAQNRRVEITLS 139 (149)
T ss_dssp HHHHHHHHHHHTCCGGGEE-EEECTTTCCSSCSSSHHHHHHHSEEEEEEE
T ss_pred HHHHHHHHHHCCCCHHEEE-EEEECCCCCCCCCCCHHHHHHCCCEEEEEE
T ss_conf 9999999998599932599-999867577799929778973597999997
No 6
>3cyp_B Chemotaxis protein MOTB; bacterial flagellar motor, peptidoglycan binding, bacterial flagellum, flagellar rotation, inner membrane, membrane; 1.60A {Helicobacter pylori} PDB: 3cyq_B* 3imp_B
Probab=99.92 E-value=4e-25 Score=185.37 Aligned_cols=106 Identities=22% Similarity=0.462 Sum_probs=94.9
Q ss_pred CCCCCCCCCC-CCHHHHHHHHHHHHHHHHCCC--CEEEEEEECCCCCC-CCCCCHHHHHHHHHHHHHHHHHHCCCCHHHE
Q ss_conf 7455568754-683565654436789861278--33898731467667-8741069999999999999999869996571
Q gi|254780529|r 234 TPMFDKSSSI-PLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFR-NIARDNWRLSLDRAYSAYQVLMKSGVSEDRI 309 (343)
Q Consensus 234 ~~lF~~gsa~-l~~~~~~~l~~ia~~l~~~~~--~i~IeGHTD~~p~~-g~~~~Nw~LS~~RA~aV~~~L~~~Gv~~~ri 309 (343)
.++|..|+++ |++.++..|+++|.+|+.+|+ .|.|+||||++|+. +.+.+||+||.+||.+|++||+..|++++||
T Consensus 4 ~~~F~~~~s~~l~~~~~~~L~~ia~~l~~~p~~~~I~I~GhTD~~~~~~~~~~~N~~LS~~RA~~V~~~L~~~Gi~~~ri 83 (138)
T 3cyp_B 4 PFTFENATSDAINQDMMLYIERIAKIIQKLPKRVHINVRGFTDDTPLVKTRFKSHYELAANRAYRVMKVLIQYGVNPNQL 83 (138)
T ss_dssp CEECSSTTCCCCCHHHHHHHHHHHHHHTTSCTTCEEEEEEECCCCCC----CCSHHHHHHHHHHHHHHHHHHTTCCGGGE
T ss_pred CEECCCCCHHHCCHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEE
T ss_conf 76618997344199899999999999996899707999885289887777617799999999999999999859996436
Q ss_pred EEEEECCCCCCCCCCCCCC--CCCCEEEEEEEC
Q ss_conf 2256303348888988521--337559999956
Q gi|254780529|r 310 SKISGFAHHRLKIASDPMN--SANRRIDILVED 340 (343)
Q Consensus 310 ~~v~G~g~~~P~~~n~t~~--~~NRRVEi~i~~ 340 (343)
. +.|||+++|+++|++.. ++||||||+|..
T Consensus 84 ~-~~g~G~~~P~~~n~~~~~~a~NRRVEI~i~~ 115 (138)
T 3cyp_B 84 S-FSSYGSTNPIAPNDSLENRMKNNRVEIFFST 115 (138)
T ss_dssp E-EEECTTCSCSSCTTSHHHHHHHSEEEEEEEE
T ss_pred E-EEEEECCCCCCCCCCHHHHHHCCCEEEEEEC
T ss_conf 8-8210013757999397899873988999976
No 7
>3oon_A Outer membrane protein (TPN50); protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; 1.79A {Borrelia burgdorferi}
Probab=99.91 E-value=3.4e-24 Score=179.14 Aligned_cols=118 Identities=25% Similarity=0.327 Sum_probs=104.8
Q ss_pred CEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CEEEEEEECCCCCCCCCCCHHHHHHHHH
Q ss_conf 114511453499997034567455568754683565654436789861278-3389873146766787410699999999
Q gi|254780529|r 214 GVLFETTRTGILISIIDQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRA 292 (343)
Q Consensus 214 ~~~v~~~~~~i~I~i~d~~~~~lF~~gsa~l~~~~~~~l~~ia~~l~~~~~-~i~IeGHTD~~p~~g~~~~Nw~LS~~RA 292 (343)
.++++....++.+.+ .++|++||+.|++.+...|+.++..|+.+|. .|.|+||||+. |...+||.||.+||
T Consensus 3 ~v~v~~~~~~i~~~~-----~i~F~~~s~~l~~~~~~~L~~ia~~l~~~~~~~I~I~Ghtd~~---g~~~~N~~LS~~RA 74 (123)
T 3oon_A 3 AIEVEKNNKGINLSF-----DIEFYPNSFQILQKEYKKIDLIAKLLEKFKKNNILIEGHTEQF---GLEEEMHELSEKRA 74 (123)
T ss_dssp CCEEEEETTEEEEEE-----EEEBCTTSCCBCGGGHHHHHHHHHHHHHSCSCCEEEEECCCSC---CCHHHHHHHHHHHH
T ss_pred CEEEEECCCEEEEEE-----EEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEECCC---CCHHHHHHHHHHHH
T ss_conf 779997587799777-----8686699832799899999999999986899569999981798---75556479999999
Q ss_pred HHHHHHHHHCCC-CHHHEEEEEECCCCCCCCCCCCC-CCCCCEEEEEEEC
Q ss_conf 999999998699-96571225630334888898852-1337559999956
Q gi|254780529|r 293 YSAYQVLMKSGV-SEDRISKISGFAHHRLKIASDPM-NSANRRIDILVED 340 (343)
Q Consensus 293 ~aV~~~L~~~Gv-~~~ri~~v~G~g~~~P~~~n~t~-~~~NRRVEi~i~~ 340 (343)
.+|++||++.|+ +++||. +.|||+++|+++|+++ +++||||||.|.+
T Consensus 75 ~aV~~~L~~~g~~~~~ri~-~~g~Ge~~p~~~~~~~~~~~NRRVei~i~~ 123 (123)
T 3oon_A 75 RAIGNYLIKMKVKDKDQIL-FKGWGSQKPKYPKSSPLKAKNRRVEITILN 123 (123)
T ss_dssp HHHHHHHHHTTSSCGGGEE-EEECTTCC----------CCEEEEEEEEEC
T ss_pred HHHHHHHHHCCCCCCCEEE-EEEEECCCCCCCCCCCCHHHCCCEEEEEEC
T ss_conf 9999999985999876899-999834774699988366871989999979
No 8
>2kgw_A Outer membrane protein A; OMPA- like, cell membrane, transmembrane; NMR {Mycobacterium tuberculosis}
Probab=99.91 E-value=1.5e-24 Score=181.44 Aligned_cols=103 Identities=23% Similarity=0.355 Sum_probs=95.5
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHEEE
Q ss_conf 67455568754683565654436789861278-33898731467667874106999999999999999986999657122
Q gi|254780529|r 233 NTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311 (343)
Q Consensus 233 ~~~lF~~gsa~l~~~~~~~l~~ia~~l~~~~~-~i~IeGHTD~~p~~g~~~~Nw~LS~~RA~aV~~~L~~~Gv~~~ri~~ 311 (343)
..++|++||+.|++.++..|+.++.+|+.+++ .|.|+||||+. |...+||+||.+||.+|++||+..|++..||.
T Consensus 24 ~~i~F~~gs~~l~~~~~~~L~~la~~l~~~~~~~i~I~GhtD~~---g~~~~n~~LS~~RA~aV~~~L~~~Gv~~~ri~- 99 (129)
T 2kgw_A 24 GPIAFGNDGASLIPADYEILNRVADKLKACPDARVTINGYTDNT---GSEGINIPLSAQRAKIVADYLVARGVAGDHIA- 99 (129)
T ss_dssp SCBCCCTTSSCCCHHHHHHHHHHHHHHHTCTTSCEEEEECCCTT---SCHHHHHHHHHHHHHHHHHHHHHHTCCGGGEE-
T ss_pred CCEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEECCC---CCHHHCHHHHHHHHHHHHHHHHHCCCCHHHEE-
T ss_conf 71486499732598899999999999997899479999981798---88102537999999999999998599989989-
Q ss_pred EEECCCCCCCCCCCCCC--CCCCEEEEEEE
Q ss_conf 56303348888988521--33755999995
Q gi|254780529|r 312 ISGFAHHRLKIASDPMN--SANRRIDILVE 339 (343)
Q Consensus 312 v~G~g~~~P~~~n~t~~--~~NRRVEi~i~ 339 (343)
+.|||+++|+++|.+.. ++||||||+|.
T Consensus 100 ~~g~G~~~p~~~~~~~~~~~~NRRVei~v~ 129 (129)
T 2kgw_A 100 TVGLGSVNPIASNATPEGRAKNRRVEIVVN 129 (129)
T ss_dssp EEECTTCSCCSCTTSHHHHHHHSCEEEEEC
T ss_pred EEEECCCCCCCCCCCHHHHHHCCCEEEEEC
T ss_conf 999745576799939889985395899979
No 9
>1r1m_A Outer membrane protein class 4; 1.90A {Neisseria meningitidis} SCOP: d.79.7.1
Probab=99.91 E-value=1.2e-24 Score=182.16 Aligned_cols=105 Identities=23% Similarity=0.319 Sum_probs=95.1
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHEE
Q ss_conf 567455568754683565654436789861278-3389873146766787410699999999999999998699965712
Q gi|254780529|r 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 (343)
Q Consensus 232 ~~~~lF~~gsa~l~~~~~~~l~~ia~~l~~~~~-~i~IeGHTD~~p~~g~~~~Nw~LS~~RA~aV~~~L~~~Gv~~~ri~ 310 (343)
...+||++||+.|++.++..|+.++..|+.+|. .|.|+||||++ |+..+||.||.+||.+|++||+..|+++.||.
T Consensus 14 ~~~v~F~~~s~~L~~~~~~~L~~ia~~l~~~~~~~I~I~GhtD~~---G~~~~N~~LS~~RA~aV~~~L~~~Gi~~~ri~ 90 (164)
T 1r1m_A 14 SAKTLFGFDKDSLRAEAQDNLKVLAQRLSRTNIQSVRVEGHTDFM---GSDKYNQALSERRAYVVANNLVSNGVPVSRIS 90 (164)
T ss_dssp EHHHHHTTSSSCCCHHHHHHHHHHHHHHTTSCEEEEEEEEECCSS---SCHHHHHHHHHHHHHHHHHHHHHTTCCGGGEE
T ss_pred CCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEECCC---CCHHHHHHHHHHHHHHHHHHHHHCCCCHHHEE
T ss_conf 773357289743698999999999999977898189999981898---98556269999999999999998599989989
Q ss_pred EEEECCCCCCCCCCCCCC--CC--------------------CCEEEEEEEC
Q ss_conf 256303348888988521--33--------------------7559999956
Q gi|254780529|r 311 KISGFAHHRLKIASDPMN--SA--------------------NRRIDILVED 340 (343)
Q Consensus 311 ~v~G~g~~~P~~~n~t~~--~~--------------------NRRVEi~i~~ 340 (343)
+.|||+++|+++|+|+. ++ ||||||.|..
T Consensus 91 -~~g~Ge~~P~~~n~t~~~~a~~~~~~~~~~~r~~~i~~~~~NRRVEi~v~~ 141 (164)
T 1r1m_A 91 -AVGLGESQAQMTQVCEAEVAKLGAKVSKAKKREALIACIEPDRRVDVKIRS 141 (164)
T ss_dssp -EEECTTTTCCCHHHHHHHHHTCCSSCCSSHHHHHHHHHTGGGSEEEEEEEE
T ss_pred -EEEECCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHCCCCCCCEEEEEEC
T ss_conf -999767688898979788742144100000046665303788988999961
No 10
>2zf8_A MOTY, component of sodium-driven polar flagellar motor; beta barrel, 2-layer sandwich, flagellum, structural protein; 2.85A {Vibrio alginolyticus}
Probab=99.90 E-value=2.7e-24 Score=179.85 Aligned_cols=105 Identities=21% Similarity=0.285 Sum_probs=96.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC--CEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHEEE
Q ss_conf 7455568754683565654436789861278--33898731467667874106999999999999999986999657122
Q gi|254780529|r 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTE--VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISK 311 (343)
Q Consensus 234 ~~lF~~gsa~l~~~~~~~l~~ia~~l~~~~~--~i~IeGHTD~~p~~g~~~~Nw~LS~~RA~aV~~~L~~~Gv~~~ri~~ 311 (343)
.++|++||+.|++.++..|++++..|+..|+ .|.|+||||+. |...+||+||.+||.+|+.||+..||+.+||.
T Consensus 163 ~v~F~~gs~~L~~~~~~~L~~ia~~Lk~~p~~~~I~I~GhTD~~---G~~~~N~~LS~~RA~~V~~~L~~~GI~~~rI~- 238 (278)
T 2zf8_A 163 ILHYERQGDQLTKASKKRLSQIADYIRHNQDIDLVLVATYTDST---DGKSASQSLSERRAESLRDYFQSLGLPEDRIQ- 238 (278)
T ss_dssp ECBSSSSSSSBCHHHHHHHHHHHHHHTTCCSCCEEEEEEC----------CCCHHHHHHHHHHHHHHHHHHSCCTTSEE-
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCC---CCHHHHHHHHHHHHHHHHHHHHHCCCCHHHEE-
T ss_conf 79848997327999999999999999868996579999882899---97688899999999999999998599979999-
Q ss_pred EEECCCCCCCCCCCCCC--CCCCEEEEEEECCC
Q ss_conf 56303348888988521--33755999995699
Q gi|254780529|r 312 ISGFAHHRLKIASDPMN--SANRRIDILVEDRQ 342 (343)
Q Consensus 312 v~G~g~~~P~~~n~t~~--~~NRRVEi~i~~~~ 342 (343)
+.|||+++|+++|+++. ++||||||.|.+.+
T Consensus 239 v~g~Ge~~Pi~~n~t~~~r~~NRRVeI~l~r~e 271 (278)
T 2zf8_A 239 VQGYGKRRPIADNGSPIGKDKNRRVVISLGRTQ 271 (278)
T ss_dssp CCEEC------------------CEEEECCCCC
T ss_pred EEEECCCCCCCCCCCHHHHHHCCCEEEEEEEEE
T ss_conf 999756577799949789973497999997369
No 11
>2hqs_H Peptidoglycan-associated lipoprotein; TOLB, PAL, TOL, transport protein/lipoprotein complex; 1.50A {Escherichia coli} SCOP: d.79.7.1 PDB: 2w8b_C 1oap_A
Probab=99.90 E-value=1.3e-23 Score=175.23 Aligned_cols=108 Identities=23% Similarity=0.283 Sum_probs=97.9
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 34567455568754683565654436789861278-33898731467667874106999999999999999986999657
Q gi|254780529|r 230 DQRNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDR 308 (343)
Q Consensus 230 d~~~~~lF~~gsa~l~~~~~~~l~~ia~~l~~~~~-~i~IeGHTD~~p~~g~~~~Nw~LS~~RA~aV~~~L~~~Gv~~~r 308 (343)
++...+||++||+.|++.+...|++++..|+.+|. .|.|.||||+. |...+||.||.+||.+|+.||+..|++++|
T Consensus 3 ~~~~~VyF~~~s~~l~~~~~~~L~~ia~~L~~~p~~~i~I~GhtD~~---g~~~~N~~LS~~RA~~V~~~L~~~Gi~~~r 79 (118)
T 2hqs_H 3 QQNNIVYFDLDKYDIRSDFAQMLDAHANFLRSNPSYKVTVEGHADER---GTPEYNISLGERRANAVKMYLQGKGVSADQ 79 (118)
T ss_dssp -CCSEEECCTTCCCCCGGGHHHHHHHHHHHHHCTTCCEEEEECCCSS---SCHHHHHHHHHHHHHHHHHHHHHTTCCGGG
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCC---CCHHHHHHHHHHHHHHHHHHHHHCCCCCCE
T ss_conf 67989994089760799899999999999977899199999972899---876566779999999999999984998046
Q ss_pred EEEEEECCCCCCCCCCCCC--CCCCCEEEEEEECC
Q ss_conf 1225630334888898852--13375599999569
Q gi|254780529|r 309 ISKISGFAHHRLKIASDPM--NSANRRIDILVEDR 341 (343)
Q Consensus 309 i~~v~G~g~~~P~~~n~t~--~~~NRRVEi~i~~~ 341 (343)
|. +.|||++.|+.+|.+. +++||||||++...
T Consensus 80 I~-~~g~G~~~p~~~~~~~~~~~~NRRVeiv~ik~ 113 (118)
T 2hqs_H 80 IS-IVSYGKEKPAVLGHDEAAYSKNRRAVLVYLEH 113 (118)
T ss_dssp EE-EEECTTSSCSSCCSSHHHHHHHSEEEEECC--
T ss_pred EE-EEEECCCCCCCCCCCHHHHHHCCCEEEEEEEE
T ss_conf 99-99974657778991977898659899999985
No 12
>2aiz_P Outer membrane protein P6; alpha-beta sandwich; HET: UDP AMU DGL 6CL DAL; NMR {Haemophilus influenzae} SCOP: d.79.7.1
Probab=99.88 E-value=1.1e-22 Score=169.20 Aligned_cols=99 Identities=18% Similarity=0.207 Sum_probs=93.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHEEEEE
Q ss_conf 455568754683565654436789861278-3389873146766787410699999999999999998699965712256
Q gi|254780529|r 235 PMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKIS 313 (343)
Q Consensus 235 ~lF~~gsa~l~~~~~~~l~~ia~~l~~~~~-~i~IeGHTD~~p~~g~~~~Nw~LS~~RA~aV~~~L~~~Gv~~~ri~~v~ 313 (343)
++|++||++|++++...|++++..|+.+|+ .|.|+||||.. |.+.+||.||.+||.+|+.||+..|+++.||. +.
T Consensus 32 i~F~~~s~~L~~~~~~~L~~ia~~l~~~~~~~i~I~GhtD~~---g~~~~N~~LS~~RA~~V~~~L~~~Gi~~~rI~-~~ 107 (134)
T 2aiz_P 32 VYFGFDKYDITGEYVQILDAHAAYLNATPAAKVLVEGNTDER---GTPEYNIALGQRRADAVKGYLAGKGVDAGKLG-TV 107 (134)
T ss_dssp EECCTTCCCCCHHHHHHHHHHHHHHHHSTTCCEEEEEECCSS---SCHHHHHHHHHHHHHHHHHHHHHTTCCGGGEE-EE
T ss_pred EECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEECCC---CCHHHCCCHHHHHHHHHHHHHHHCCCCCCEEE-EE
T ss_conf 780699700599999999999999996899389999861686---87232734799999999999997498513798-88
Q ss_pred ECCCCCCCCCCCCCC--CCCCEEEEE
Q ss_conf 303348888988521--337559999
Q gi|254780529|r 314 GFAHHRLKIASDPMN--SANRRIDIL 337 (343)
Q Consensus 314 G~g~~~P~~~n~t~~--~~NRRVEi~ 337 (343)
|||+++|+++|++.. ++||||||+
T Consensus 108 g~G~~~P~~~~~~~~~~~~NRRVei~ 133 (134)
T 2aiz_P 108 SYGEEKPAVLGHDEAAYSKNRRAVLA 133 (134)
T ss_dssp ECTTTSCSSCSCSHHHHHHHSEEEEE
T ss_pred EECCCCCCCCCCCHHHHHCCCCEEEE
T ss_conf 80564767899197787633989995
No 13
>1svd_M Ribulose bisphosphate carboxylase small chain; beta-alpha-barrel, lyase; 1.80A {Halothiobacillus neapolitanus} SCOP: d.73.1.1
Probab=74.67 E-value=2.1 Score=20.40 Aligned_cols=95 Identities=12% Similarity=0.120 Sum_probs=53.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCHHHH---HHHHHHHHHHHHHH--CCCCHHHE
Q ss_conf 45556875468356565443678986127833898731467667874106999---99999999999998--69996571
Q gi|254780529|r 235 PMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRL---SLDRAYSAYQVLMK--SGVSEDRI 309 (343)
Q Consensus 235 ~lF~~gsa~l~~~~~~~l~~ia~~l~~~~~~i~IeGHTD~~p~~g~~~~Nw~L---S~~RA~aV~~~L~~--~Gv~~~ri 309 (343)
.-|++=|.-+.-....+.++|.-.| .....+.|| |||...+.+.+=.-|.| ...++..|...|.. .-.+..-
T Consensus 11 ~~~eTfSylP~lt~~~I~~QV~yll-~qG~~i~iE-~ad~~~~~~~yW~mw~lPmf~~~d~~~Vl~ele~c~~~~p~~Y- 87 (110)
T 1svd_M 11 LKYETFSYLPPMNAERIRAQIKYAI-AQGWSPGIE-HVEVKNSMNQYWYMWKLPFFGEQNVDNVLAEIEACRSAYPTHQ- 87 (110)
T ss_dssp CCCSTTTTSCCCCHHHHHHHHHHHH-HTTCEEEEE-EECGGGTTCSCCEEESCCCTTCCCHHHHHHHHHHHHHHSTTSE-
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHH-HCCCEEEEE-EECCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCE-
T ss_conf 5332002589999999999999999-789985688-6126777777631147887578899999999999999899877-
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCEEEEEEECCC
Q ss_conf 225630334888898852133755999995699
Q gi|254780529|r 310 SKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 (343)
Q Consensus 310 ~~v~G~g~~~P~~~n~t~~~~NRRVEi~i~~~~ 342 (343)
+++.||-.. .+-|.++++|.+.+
T Consensus 88 VRlig~D~~----------~q~q~~~fIV~RP~ 110 (110)
T 1svd_M 88 VKLVAYDNY----------AQSLGLAFVVYRGN 110 (110)
T ss_dssp EEEEEEETT----------TTEEEEEEEEECCC
T ss_pred EEEEEEECC----------CCEEEEEEEEECCC
T ss_conf 999998088----------52899999997889
No 14
>1bwv_S Rubisco, protein (ribulose bisphosphate carboxylase); carbon dioxide fixation, complex (rubisco/reaction intermediate); HET: KCX CAP; 2.40A {Galdieria partita} SCOP: d.73.1.1 PDB: 1iwa_B
Probab=58.78 E-value=6.2 Score=17.34 Aligned_cols=48 Identities=15% Similarity=0.107 Sum_probs=32.2
Q ss_pred EEEEECCCCCCCCCCCCCCCC-------CHHHHHHHHHHHHHHHHCCC-CEEEEEEECC
Q ss_conf 999970345674555687546-------83565654436789861278-3389873146
Q gi|254780529|r 224 ILISIIDQRNTPMFDKSSSIP-------LPETIVVLQKIGEVLAHSTE-VISIRGHTDA 274 (343)
Q Consensus 224 i~I~i~d~~~~~lF~~gsa~l-------~~~~~~~l~~ia~~l~~~~~-~i~IeGHTD~ 274 (343)
+-|+..|.. .|..++-++ ......+|.+|..-++.+|+ .|++-|.-..
T Consensus 33 i~iE~~d~~---~~r~~yW~mw~lPmf~~~d~~~Vl~Ele~C~~~~p~~YVRligfD~~ 88 (138)
T 1bwv_S 33 IGIEYTNDI---HPRNAYWEIWGLPLFDVTDPAAVLFEINACRKARSNFYIKVVGFSSV 88 (138)
T ss_dssp EEEEEESCC---CTTCCCCEECSSCBCSCCCHHHHHHHHHHHHHHCTTSEEEEEEEECC
T ss_pred EEEEECCCC---CCCCCHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECC
T ss_conf 646763677---55664000325764579999999999999999899774999999787
No 15
>2jwk_A Protein TOLR; periplasmic domain, membrane, inner membrane, protein transport, transmembrane, transport, membrane protein; NMR {Haemophilus influenzae} PDB: 2jwl_A
Probab=56.75 E-value=8.1 Score=16.55 Aligned_cols=67 Identities=9% Similarity=0.150 Sum_probs=42.1
Q ss_pred EEEEECCCCCCCCCCCCCCCCCHH-HHHHHHHHHHHHHHCCC-CEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 999970345674555687546835-65654436789861278-3389873146766787410699999999999999998
Q gi|254780529|r 224 ILISIIDQRNTPMFDKSSSIPLPE-TIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMK 301 (343)
Q Consensus 224 i~I~i~d~~~~~lF~~gsa~l~~~-~~~~l~~ia~~l~~~~~-~i~IeGHTD~~p~~g~~~~Nw~LS~~RA~aV~~~L~~ 301 (343)
++|+|.. .+..++..|+....+- ...+..++...+...|+ .|.|.|+.+.. ..+-..|++.|..
T Consensus 5 ~ivsI~~-~G~~~l~~~~~~~~~v~~~~L~~~l~~~~~~~p~~~V~iraD~~v~-------------Y~~Vv~vmd~l~~ 70 (74)
T 2jwk_A 5 VILEVAG-IGKYAISIGGERQEGLTEEMVTQLSRQEFDKDNNTLFLVGGAKEVP-------------YEEVIKALNLLHL 70 (74)
T ss_dssp EEEEECS-SSCEEEEETTEEEEEECHHHHHHHHHHHHHHCTTCCEEEEECTTSC-------------HHHHHHHHHHHHH
T ss_pred EEEEECC-CCCEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC-------------HHHHHHHHHHHHH
T ss_conf 9999838-9429996499767516999999999999843999459997798887-------------8999999999998
Q ss_pred CCC
Q ss_conf 699
Q gi|254780529|r 302 SGV 304 (343)
Q Consensus 302 ~Gv 304 (343)
.|+
T Consensus 71 aGi 73 (74)
T 2jwk_A 71 AGI 73 (74)
T ss_dssp TTC
T ss_pred CCC
T ss_conf 399
No 16
>1vfj_A Nitrogen regulatory protein P-II; structural genomics, signal transducing protein, riken structural genomics/proteomics initiative, RSGI; 1.70A {Thermus thermophilus} SCOP: d.58.5.1 PDB: 1ufl_A 1v3s_A* 1v9o_A* 1v3r_A
Probab=45.27 E-value=12 Score=15.37 Aligned_cols=52 Identities=13% Similarity=0.250 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHCCCCHHHEEEEEECCCCCCCC---CCCC---CCCCCCEEEEEEECC
Q ss_conf 999999999998699965712256303348888---9885---213375599999569
Q gi|254780529|r 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI---ASDP---MNSANRRIDILVEDR 341 (343)
Q Consensus 290 ~RA~aV~~~L~~~Gv~~~ri~~v~G~g~~~P~~---~n~t---~~~~NRRVEi~i~~~ 341 (343)
.|...|.+.|...|++.=-+..|.|||-.+... .... .--..+|+||++.+.
T Consensus 11 ~k~~~v~~AL~~~G~~g~Tv~~V~G~G~q~~~~~~~~~~~~~~~~~~k~~ieivv~d~ 68 (116)
T 1vfj_A 11 EKLNEVLKALFQAEVRGLTLSRVQGHGGETERVETYRGTTVKMELHEKVRLEIGVSEP 68 (116)
T ss_dssp GGHHHHHHHHHHTTCCCCEEEEEEEECTTCCCHHHHTTSCCSTTCEEEEEEEEEECGG
T ss_pred HHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCEEEEECCCCCEEEEEEECHH
T ss_conf 9999999999977998489986075277877432233507762016746999998689
No 17
>2xbp_A Nitrogen regulatory protein P-II; nucleotide-binding, transcription regulation, transcription, phosphoprotein, gene regulation; HET: ATP; 1.20A {Synechococcus elongatus} PDB: 2v5h_G* 2jj4_D* 2xg8_A 1qy7_A 1ul3_A
Probab=44.20 E-value=13 Score=15.27 Aligned_cols=52 Identities=17% Similarity=0.264 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHCCCCHHHEEEEEECCCCCCCCCCC--C----CCCCCCEEEEEEECC
Q ss_conf 999999999998699965712256303348888988--5----213375599999569
Q gi|254780529|r 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD--P----MNSANRRIDILVEDR 341 (343)
Q Consensus 290 ~RA~aV~~~L~~~Gv~~~ri~~v~G~g~~~P~~~n~--t----~~~~NRRVEi~i~~~ 341 (343)
.|..+|.+.|.+.|++.=-+..|.|||......... . .--.-+|+||++.+.
T Consensus 11 ~k~~~v~~AL~~~Gv~g~Tv~~V~G~G~~~g~~~~~~~~~~~~~~~~k~~ieivv~D~ 68 (113)
T 2xbp_A 11 FKLDEVKIALVNAGIVGMTVSEVRGFGRQKGQTERYRGSEYTVEFLQKLKLEIVVEDA 68 (113)
T ss_dssp GGHHHHHHHHHHTTCCCCEEEEEEECCCCTTCCEEETTEEESSCCEEEEEEEEEECGG
T ss_pred HHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCEEEECEEEEECCCCEEEEEEEECHH
T ss_conf 8999999999977998499972356705678610240206661105538999998789
No 18
>2j9c_A GLNK1, hypothetical nitrogen regulatory PII-like protein MJ0059; EM single particle, nitrogen metabolism, signalling, transcription; HET: ATP; 1.30A {Methanococcus jannaschii} PDB: 2j9d_A* 2j9e_A* 2j9d_E*
Probab=43.11 E-value=13 Score=15.16 Aligned_cols=52 Identities=12% Similarity=0.146 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHCCCCHHHEEEEEECCCCCCCCCCCC--C----CCCCCEEEEEEECC
Q ss_conf 9999999999986999657122563033488889885--2----13375599999569
Q gi|254780529|r 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP--M----NSANRRIDILVEDR 341 (343)
Q Consensus 290 ~RA~aV~~~L~~~Gv~~~ri~~v~G~g~~~P~~~n~t--~----~~~NRRVEi~i~~~ 341 (343)
.|...|.+.|...|++.=-+..|.|||..+....... . --.-+++||++.+.
T Consensus 13 ~kl~~v~~AL~~~Gv~g~Tv~~v~G~G~~~~~~~~~~~~~~~~~~~~k~~leivv~d~ 70 (119)
T 2j9c_A 13 EKLEIVKKALSDAGYVGMTVSEVKGRGVQGGIVERYRGREYIVDLIPKVKIELVVKEE 70 (119)
T ss_dssp GGHHHHHHHHHHTTCCCEEEEEEEEECCSSSSCCEETTEECSSSCEEEEEEEEEEEGG
T ss_pred HHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCEEECCCEEEECCCCEEEEEEEECHH
T ss_conf 8999999999977997099996564178888521431412452205469999998878
No 19
>2o66_A PII protein; regulation of nitrogen and carbon metabolism, biosynthetic protein; HET: FLC; 1.90A {Arabidopsis thaliana} PDB: 2o67_A 2rd5_C*
Probab=42.75 E-value=13 Score=15.12 Aligned_cols=51 Identities=22% Similarity=0.311 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHCCCCHHHEEEEEECCCCCCCCC----CCCC---CCCCCEEEEEEECC
Q ss_conf 999999999986999657122563033488889----8852---13375599999569
Q gi|254780529|r 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA----SDPM---NSANRRIDILVEDR 341 (343)
Q Consensus 291 RA~aV~~~L~~~Gv~~~ri~~v~G~g~~~P~~~----n~t~---~~~NRRVEi~i~~~ 341 (343)
|...|.+.|.+.|++.=-+..|.|+|-.+.... +... --.-++|||++.+.
T Consensus 24 kl~~V~~AL~~~Gv~g~Tv~~V~G~G~q~g~~~~~~~~~~~~~~~~~Kv~ieivv~De 81 (135)
T 2o66_A 24 RIQQVSSALLKIGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVKKD 81 (135)
T ss_dssp GHHHHHHHHHHTTCCCCEEEEEEECC---------------CCCCEEEEEEEEEEEGG
T ss_pred HHHHHHHHHHHCCCCCEEEEEEEEECCCCCCEEEECCCEEEECCCCCEEEEEEEECHH
T ss_conf 9999999999779985899745765256661243156200001337569999997738
No 20
>1wdd_S Ribulose bisphosphate carboxylase small chain C; rubisco, photosynthesis, alpha/beta barrel, N- methylmethionine, post-translational modification; HET: KCX CAP; 1.35A {Oryza sativa} SCOP: d.73.1.1 PDB: 8ruc_I* 1aus_S 1rbo_S* 1rco_S* 1rcx_S* 1rxo_S* 1upm_C* 1upp_I* 1aa1_S* 3rub_S 1rlc_S* 1rld_S 1ej7_S 1ir1_S* 4rub_S*
Probab=41.53 E-value=12 Score=15.36 Aligned_cols=96 Identities=20% Similarity=0.274 Sum_probs=47.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEE----------EEECCCCCCCCCCCHHHHH---HHHHHHHHHHHHH-
Q ss_conf 5556875468356565443678986127833898----------7314676678741069999---9999999999998-
Q gi|254780529|r 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR----------GHTDASPFRNIARDNWRLS---LDRAYSAYQVLMK- 301 (343)
Q Consensus 236 lF~~gsa~l~~~~~~~l~~ia~~l~~~~~~i~Ie----------GHTD~~p~~g~~~~Nw~LS---~~RA~aV~~~L~~- 301 (343)
.|++=|.-+.-...++.++|.- |-.....+.|| +|++..-+.+.|=.=|.|. ...+.+|+..|..
T Consensus 11 ~~ETfSyLP~ltd~qI~kQV~y-~l~qGw~p~iEf~d~~~~~~~~h~~p~~~~~~yW~mWkLPmFg~~d~~~Vl~Ele~C 89 (128)
T 1wdd_S 11 KFETLSYLPPLTVEDLLKQIEY-LLRSKWVPCLEFSKVGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDATQVLKELEEA 89 (128)
T ss_dssp CCSTTTTSSCCCHHHHHHHHHH-HHHTTCEEEEEEESCCSCBCSSCCSTTCCBSCCCEEESCCCTTCCCHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHH-HHHCCCEEEEEECCCCCEECCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHH
T ss_conf 3000236899998999999999-997899556887368843236899845333785142477886888999999999999
Q ss_pred -CCCCHHHEEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCC
Q ss_conf -699965712256303348888988521337559999956999
Q gi|254780529|r 302 -SGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 (343)
Q Consensus 302 -~Gv~~~ri~~v~G~g~~~P~~~n~t~~~~NRRVEi~i~~~~~ 343 (343)
.-.+. ..+++.||-..+ +-|.++++|.+..|
T Consensus 90 ~k~~p~-~YVRligfD~~~----------q~q~~sfIV~RP~G 121 (128)
T 1wdd_S 90 KKAYPD-AFVRIIGFDNVR----------QVQLISFIAYKPPG 121 (128)
T ss_dssp HHHCTT-SEEEEEEEETTT----------TEEEEEEEEECCTT
T ss_pred HHHCCC-CEEEEEEEECCC----------CEEEEEEEEECCCC
T ss_conf 997998-769999997887----------87999999988999
No 21
>3mhy_A PII-like protein PZ; PII protein, alpha-beta protein, homotrimer, signaling prote; HET: PG6 ATP AKG MES; 1.40A {Azospirillum brasilense}
Probab=41.25 E-value=14 Score=14.97 Aligned_cols=51 Identities=14% Similarity=0.259 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHCCCCHHHEEEEEECCCCCCCCC---CC---CCCCCCCEEEEEEECC
Q ss_conf 999999999986999657122563033488889---88---5213375599999569
Q gi|254780529|r 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA---SD---PMNSANRRIDILVEDR 341 (343)
Q Consensus 291 RA~aV~~~L~~~Gv~~~ri~~v~G~g~~~P~~~---n~---t~~~~NRRVEi~i~~~ 341 (343)
|-.+|.+.|...|++.=-+..|.|+|..+.... .. ..--..+|+||++.+.
T Consensus 12 k~~~v~~AL~~~Gv~g~Tv~~v~G~G~~~g~~~~~~g~~~~~~~~~k~~ieivv~d~ 68 (112)
T 3mhy_A 12 KLDEVREALTSLGIQGLTVSEVKGFGRQKGQTEIYRGAEYSVSFLPKVKVEVAVSDD 68 (112)
T ss_dssp GHHHHHHHHHHHTCCCEEEEEEEEECTTTTCC---------CCCEEEEEEEEEECTT
T ss_pred HHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCEECCCEEECCCCCEEEEEEEECHH
T ss_conf 999999999977998699995680157788542011422450203147999999638
No 22
>2gw8_A PII signal transduction protein; transcriptional regulation, structural genomics, oxford protein production facility, OPPF; 1.85A {Neisseria meningitidis MC58}
Probab=40.86 E-value=14 Score=14.93 Aligned_cols=51 Identities=14% Similarity=0.318 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHCCCCHHHEEEEEECCCCCCCC---CCCCCC---CCCCEEEEEEECC
Q ss_conf 99999999998699965712256303348888---988521---3375599999569
Q gi|254780529|r 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKI---ASDPMN---SANRRIDILVEDR 341 (343)
Q Consensus 291 RA~aV~~~L~~~Gv~~~ri~~v~G~g~~~P~~---~n~t~~---~~NRRVEi~i~~~ 341 (343)
|..+|.+.|.+.|++.=-+..|.|||-..... ...+.. -.-+||||++.+.
T Consensus 14 kl~~v~~AL~~~Gv~g~Tv~~V~G~G~~~g~~~~~~g~~~~~~~~~k~~ieivv~d~ 70 (114)
T 2gw8_A 14 KLDDVREALTEIGITGMTVSEVKGFGRQKGHTEIYRGAEYAVDFLPKIKIELVLADD 70 (114)
T ss_dssp GHHHHHHHHHHTTCCCCEEEEEEEECC--------------CCEEEEEEEEEEEEGG
T ss_pred HHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCEEECCEEECCCCCEEEEEEEECCH
T ss_conf 999999999977998399995053346778601231541241302068999999718
No 23
>3aaf_A Werner syndrome ATP-dependent helicase; helix-turn-helix, winged-helix, protein-DNA complex, DNA- binding, helicase; HET: DNA; 1.90A {Homo sapiens} PDB: 2axl_A
Probab=39.18 E-value=15 Score=14.76 Aligned_cols=76 Identities=11% Similarity=-0.023 Sum_probs=46.7
Q ss_pred CCCCCCCCCHHHHHHHHH------------HHHHHHHCCC-CEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 556875468356565443------------6789861278-338987314676678741069999999999999999869
Q gi|254780529|r 237 FDKSSSIPLPETIVVLQK------------IGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303 (343)
Q Consensus 237 F~~gsa~l~~~~~~~l~~------------ia~~l~~~~~-~i~IeGHTD~~p~~g~~~~Nw~LS~~RA~aV~~~L~~~G 303 (343)
.+..+-+++.+++.+|.- ++.+|+...+ .|. +|| |..+.-|.- -+++.....++.+.|+..|
T Consensus 7 ~~~~~~D~t~eA~~iL~~V~~~~~rfg~~~iidiLrGs~~~kI~-~~~-~~l~~fG~g---~~~~~~~~~~li~~Li~~g 81 (134)
T 3aaf_A 7 SEDTSWDFGPQAFKLLSAVDILGEKFGIGLPILFLRGSNSQRLA-DQY-RRHSLFGTG---KDQTESWWKAFSRQLITEG 81 (134)
T ss_dssp ----CEECHHHHHHHHHHHHHTTTCSCTHHHHHHHTTCCCTTSC-GGG-GGSTTTTTT---TTSCHHHHHHHHHHHHHTT
T ss_pred CCCCCEEHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCHHHH-HHH-HHHHHHCCC---CCCCHHHHHHHHHHHHHCC
T ss_conf 98754221799999999999967865512555878468827899-997-444673798---7689999999999999859
Q ss_pred CCHHHEEEEEECCCCCCC
Q ss_conf 996571225630334888
Q gi|254780529|r 304 VSEDRISKISGFAHHRLK 321 (343)
Q Consensus 304 v~~~ri~~v~G~g~~~P~ 321 (343)
+- ..+.+|+...++
T Consensus 82 ~L----~e~~~~~~~~~v 95 (134)
T 3aaf_A 82 FL----VEVSRYNKFMKI 95 (134)
T ss_dssp SE----EEEECSSTTCEE
T ss_pred CC----CCCCCCCCCCCE
T ss_conf 70----011255864123
No 24
>2ns1_B Nitrogen regulatory protein P-II 2; protein-protein complex, membrane protein, ammonia, channel, inhibitor, signal protein, ADP, BOG; HET: BOG ADP; 1.96A {Escherichia coli K12} SCOP: d.58.5.1 PDB: 1gnk_A 2nuu_G* 2gnk_A*
Probab=39.01 E-value=15 Score=14.75 Aligned_cols=52 Identities=13% Similarity=0.281 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHCCCCHHHEEEEEECCCCCCCCC---CCCCC---CCCCEEEEEEECC
Q ss_conf 9999999999986999657122563033488889---88521---3375599999569
Q gi|254780529|r 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIA---SDPMN---SANRRIDILVEDR 341 (343)
Q Consensus 290 ~RA~aV~~~L~~~Gv~~~ri~~v~G~g~~~P~~~---n~t~~---~~NRRVEi~i~~~ 341 (343)
.|..+|.+.|.+.|++.=-+..|.|||..++... +.... -.-.+|||++.+.
T Consensus 15 ~kl~~v~~AL~~~Gv~g~Tv~~v~G~G~~~~~~~~~~~~~~~~~~~~k~~ieivv~D~ 72 (116)
T 2ns1_B 15 FKLEDVREALSSIGIQGLTVTEVKGFGRQKGHAELYRGAEFSVNFLPKVKIDVAIADD 72 (116)
T ss_dssp GGHHHHHHHHHHTTCCCCEEEEEEECSSSCCCCEEETTEEECCCCEEEEEEEEEEEGG
T ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCEECCCEEEEEEEEEEEEEEEECHH
T ss_conf 9999999999968998699995811688888652042522253012379999998678
No 25
>2qt7_A Receptor-type tyrosine-protein phosphatase-like N; IA-2, ICA-512, protein-tyrosine phosphatase, transmembrane protein, diabetes, autoimmunity; 1.30A {Homo sapiens}
Probab=37.16 E-value=16 Score=14.56 Aligned_cols=69 Identities=22% Similarity=0.270 Sum_probs=46.8
Q ss_pred CHHHHHHHHHHHHHHHHCCC---CEEEEEEECCCCCCCCCCCHHHHH--HHHHHHHHHHHHH-CCCCHHHEEEEEECCCC
Q ss_conf 83565654436789861278---338987314676678741069999--9999999999998-69996571225630334
Q gi|254780529|r 245 LPETIVVLQKIGEVLAHSTE---VISIRGHTDASPFRNIARDNWRLS--LDRAYSAYQVLMK-SGVSEDRISKISGFAHH 318 (343)
Q Consensus 245 ~~~~~~~l~~ia~~l~~~~~---~i~IeGHTD~~p~~g~~~~Nw~LS--~~RA~aV~~~L~~-~Gv~~~ri~~v~G~g~~ 318 (343)
..++.++|..+|..|.=... .|+|.||.=+=.++.. .-||..+ ++.|......|.+ .|+ +|+. +|-|+.
T Consensus 16 ~~~G~~Ll~~lA~ll~l~~~~F~~i~V~g~aVTFrV~~N-~~n~taadVak~a~~~K~~Le~~tGl---~Ilq-tGVG~k 90 (91)
T 2qt7_A 16 LAAGVKLLEILAEHVHMSSGSFINISVVGPALTFRIRHN-EQNLSLADVTQQAGLVKSELEAQTGL---QILQ-TGVGQR 90 (91)
T ss_dssp HHHHHHHHHHHHHHHTSCGGGEEEEEEETTEEEEEECCC-TTCCCHHHHHHHHHHTHHHHHHHHTS---CEEE-EEEECC
T ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEEEECCCEEEEECCC-CCCCCHHHHHHHHHHHHHHHHHHHCE---EEEE-ECCCCC
T ss_conf 788899999999995787323034687567079996357-35786999999999879998774191---9997-043568
No 26
>3ce8_A Putative PII-like nitrogen regulatory protein; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.40A {Shewanella baltica OS155}
Probab=34.95 E-value=17 Score=14.33 Aligned_cols=31 Identities=16% Similarity=0.233 Sum_probs=16.4
Q ss_pred HHHHHHHHH-CCCCHHHEEEEEECCCCCCCCC
Q ss_conf 999999998-6999657122563033488889
Q gi|254780529|r 293 YSAYQVLMK-SGVSEDRISKISGFAHHRLKIA 323 (343)
Q Consensus 293 ~aV~~~L~~-~Gv~~~ri~~v~G~g~~~P~~~ 323 (343)
..+.++|.. .|+..=-+..+.|||......+
T Consensus 36 e~LVD~Lle~~gv~GFTi~~a~G~G~~~~~~S 67 (120)
T 3ce8_A 36 DDIVDTLIELEFLSGFSLGNICGFSREHSHFN 67 (120)
T ss_dssp HHHHHHHTTCTTCCCCEEEEEEEEECC-----
T ss_pred HHHHHHHHHCCCCCCEEEEECCCCCCCCCCCC
T ss_conf 99999999668989879983332476665757
No 27
>3d55_A Antitoxin, uncharacterized protein RV3357/MT3465; tetramer, toxin neutraliSer, toxin inhibitor; 2.13A {Mycobacterium tuberculosis} PDB: 3cto_A
Probab=34.89 E-value=12 Score=15.30 Aligned_cols=48 Identities=8% Similarity=0.163 Sum_probs=33.7
Q ss_pred CCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 37688689998216888878874318879999999999999999975089999999999853
Q gi|254780529|r 9 QENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70 (343)
Q Consensus 9 ~~~~~~~iikr~~~~~~~~~~~~~W~vtyAD~~TlLmaFFvll~s~s~~d~~k~~~i~~~f~ 70 (343)
..+++||||.|+++ ++=+++..|+=.++=+.++| .++.-.+.+..++.
T Consensus 20 ~~~~epviItr~~~--------~aVlis~~dyesl~ETl~Ll------s~p~na~~L~~s~~ 67 (91)
T 3d55_A 20 NTDHQPVRITSRAG--------DAVLMSADDYDAWQETVYLL------RSPENARRLMEAVA 67 (91)
T ss_dssp HHHCCCEEEECTTC--------CEEEEEHHHHHHHHHHHHHT------TSHHHHHHHHHHHT
T ss_pred HCCCCEEEEEECCC--------CEEEEEHHHHHHHHHHHHHH------CCHHHHHHHHHHHH
T ss_conf 75697499994799--------76996699998899999997------69999999999999
No 28
>2eg2_A Nitrogen regulatory protein P-II; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: ATP; 1.72A {Aquifex aeolicus} PDB: 2eg1_A* 2z0g_A 2pii_A 1pil_A
Probab=34.70 E-value=18 Score=14.30 Aligned_cols=52 Identities=13% Similarity=0.277 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHCCCCHHHEEEEEECCCCCCCCCC---CCC---CCCCCEEEEEEECC
Q ss_conf 99999999999869996571225630334888898---852---13375599999569
Q gi|254780529|r 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS---DPM---NSANRRIDILVEDR 341 (343)
Q Consensus 290 ~RA~aV~~~L~~~Gv~~~ri~~v~G~g~~~P~~~n---~t~---~~~NRRVEi~i~~~ 341 (343)
.|...|.+.|.+.|++.=-+..|.|+|-......- ... -..-+||||++.+.
T Consensus 11 ~k~~~v~~AL~~~Gv~g~Tv~~v~G~G~~~~~~~~~~~~~~~~~~~~k~~ieivv~d~ 68 (112)
T 2eg2_A 11 FKLDEVKDALVEIGIGGMTVTEVKGFGQQKGHTEIYRGTEYVIDFLPKVKIEVVVRDE 68 (112)
T ss_dssp GGHHHHHHHHHHTTCCCCEEEEEEEC-----------------CCEEEEEEEEEECGG
T ss_pred HHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCEECCCEEEEEECCEEEEEEEECHH
T ss_conf 9999999999978997199996066325667411341632462030269999999858
No 29
>3bzq_A Nitrogen regulatory protein P-II; GLNB, GLNK, signal transdu protein, nucleotide-binding, transcription; 1.40A {Mycobacterium tuberculosis H37RV} PDB: 3lf0_A*
Probab=34.48 E-value=18 Score=14.28 Aligned_cols=52 Identities=19% Similarity=0.279 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHCCCCHHHEEEEEECCCCCCCCCCC---CCC---CCCCEEEEEEECCC
Q ss_conf 99999999998699965712256303348888988---521---33755999995699
Q gi|254780529|r 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASD---PMN---SANRRIDILVEDRQ 342 (343)
Q Consensus 291 RA~aV~~~L~~~Gv~~~ri~~v~G~g~~~P~~~n~---t~~---~~NRRVEi~i~~~~ 342 (343)
|...|.+.|.+.|++.=-+..|.|+|-.+...... ... -.-++|||++.+.+
T Consensus 14 kl~~v~~AL~~~G~~g~Tv~~V~G~G~~~~~~~~~~~~~~~~~~~~k~~ieivv~d~~ 71 (114)
T 3bzq_A 14 TLDDVKTSLEDAGVLGMTVSEIQGYGRQKGHTEVYRGAEYSVDFVPKVRIEVVVDDSI 71 (114)
T ss_dssp GHHHHHHHHHHTTCCCCEEEEEEEECC---------------CEEEEEEEEEEEETTT
T ss_pred HHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCEEECCCEEEECCCCEEEEEEEECHHH
T ss_conf 9999999999789985999983053466786024424156731131699999988799
No 30
>1bxn_I Rubisco, protein (ribulose bisphosphate carboxylase small chain); lyase (carbon-carbon); 2.70A {Cupriavidus necator} SCOP: d.73.1.1
Probab=33.39 E-value=9.2 Score=16.19 Aligned_cols=39 Identities=10% Similarity=0.037 Sum_probs=26.5
Q ss_pred CCCCCCCCC-------CHHHHHHHHHHHHHHHHCCC-CEEEEEEECC
Q ss_conf 555687546-------83565654436789861278-3389873146
Q gi|254780529|r 236 MFDKSSSIP-------LPETIVVLQKIGEVLAHSTE-VISIRGHTDA 274 (343)
Q Consensus 236 lF~~gsa~l-------~~~~~~~l~~ia~~l~~~~~-~i~IeGHTD~ 274 (343)
.|...+-.+ ......+|.+|..-++.+|+ .|+|-|.-..
T Consensus 42 ~~r~~yW~mwklPmf~~~d~~~Vl~Ele~C~~~~p~~YVRliGfD~~ 88 (139)
T 1bxn_I 42 HPRNTYWEMFGLPMFDLRDAAGILMEINNARNTFPNHYIRVTAFDST 88 (139)
T ss_dssp CTTCCCCEESSSCBTTCCCHHHHHHHHHHHHHHCSSSEEEEEEECTT
T ss_pred CCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECC
T ss_conf 77776100535665579999999999999999899876999999688
No 31
>3ncq_A Nitrogen regulatory protein P-II (GLNB-2); PII signaling, nucleotide binding, GLNK, signaling Pro; HET: ATP; 1.24A {Archaeoglobus fulgidus} PDB: 3ncp_A* 3ncr_A*
Probab=31.47 E-value=20 Score=13.96 Aligned_cols=51 Identities=14% Similarity=0.161 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHCCCCHHHEEEEEECCCCCCCCCCCC---CC---CCCCEEEEEEECC
Q ss_conf 999999999986999657122563033488889885---21---3375599999569
Q gi|254780529|r 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP---MN---SANRRIDILVEDR 341 (343)
Q Consensus 291 RA~aV~~~L~~~Gv~~~ri~~v~G~g~~~P~~~n~t---~~---~~NRRVEi~i~~~ 341 (343)
|...|.+.|.+.|++.=-+..|.|||.......... .. -.-++|||++.+.
T Consensus 12 kl~~V~~AL~~~Gv~g~Tv~~v~G~G~~~g~~~~~~~~~~~~~~~pk~~ieivv~De 68 (119)
T 3ncq_A 12 KFPEVKAALEERGFYGMTVTDVKGRGQQGGMQIQFRGRTMEVTLLPKVKLEIVVKDD 68 (119)
T ss_dssp THHHHHHHHHHTTCCCEEEEEEEEECSTTTTCBCSSSSCBCCCCEEEEEEEEEECGG
T ss_pred HHHHHHHHHHHCCCCCEEEEEEEEECCCCCCEEEECCCEEEEEEEEEEEEEEEECHH
T ss_conf 999999999977998499994487457788605762625788554248999998779
No 32
>2cz4_A Hypothetical protein TTHA0516; conserved hypothetical protein, PII-like signaling protein, structural genomics, NPPSFA; 1.93A {Thermus thermophilus HB8} SCOP: d.58.5.1
Probab=25.05 E-value=26 Score=13.23 Aligned_cols=46 Identities=13% Similarity=0.193 Sum_probs=21.9
Q ss_pred HHHHHHHHHHCCCCHHHEEEEEECCCCCCCCCCCCCCCCCCEEEEEEE
Q ss_conf 999999999869996571225630334888898852133755999995
Q gi|254780529|r 292 AYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVE 339 (343)
Q Consensus 292 A~aV~~~L~~~Gv~~~ri~~v~G~g~~~P~~~n~t~~~~NRRVEi~i~ 339 (343)
...|.+.|.+.|+..==+..|.|+|....... ..++.|=|||+++.
T Consensus 37 ~d~v~~~L~~~Gv~G~TV~~v~G~G~~g~~~~--~~~~~kv~Ievvv~ 82 (119)
T 2cz4_A 37 EKRLVEEVKRLGAKGYTITPARGEGSRGIRSV--DWEGQNIRLETIVS 82 (119)
T ss_dssp HHHHHHHHHHTTCCCCEEEEEBCTTCCCTTCS--CSTTCEEEEEEEEC
T ss_pred HHHHHHHHHHCCCCEEEEEEEEEEECCCCCCC--CEECCEEEEEEEEC
T ss_conf 99999999987980289997089812687734--28045069999958
No 33
>1skh_A Major prion protein 2; coil-helix-coil, unknown function; NMR {Bos taurus}
Probab=25.02 E-value=26 Score=13.22 Aligned_cols=11 Identities=27% Similarity=0.893 Sum_probs=8.4
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999997
Q gi|254780529|r 44 LMAFFLVMWII 54 (343)
Q Consensus 44 LmaFFvll~s~ 54 (343)
||.+||..||=
T Consensus 10 ~lvlfvatwsd 20 (30)
T 1skh_A 10 ILVLFVAMWSD 20 (30)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
T ss_conf 77888887744
No 34
>1itk_A Catalase-peroxidase; heme protein, oxidoreductase; HET: HEM; 2.00A {Haloarcula marismortui} SCOP: a.93.1.3 a.93.1.3
Probab=24.90 E-value=18 Score=14.29 Aligned_cols=12 Identities=42% Similarity=0.584 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHH
Q ss_conf 188799999999
Q gi|254780529|r 33 WKIVYADFMTVL 44 (343)
Q Consensus 33 W~vtyAD~~TlL 44 (343)
|+||||||++|-
T Consensus 145 ~~ISwADL~~LA 156 (731)
T 1itk_A 145 QKISWADLMILA 156 (731)
T ss_dssp GGSCHHHHHHHH
T ss_pred CCCCHHHHHHHH
T ss_conf 998899999999
No 35
>1hwu_A PII protein; herbaspirillum seropedicae PII, beta-alpha-beta motif, signal transduction protein, signaling protein; 2.10A {Herbaspirillum seropedicae} SCOP: d.58.5.1
Probab=22.15 E-value=29 Score=12.86 Aligned_cols=51 Identities=16% Similarity=0.332 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHCCCCHHHEEEEEECCCCCCCCCC---CCCC---CCCCEEEEEEECC
Q ss_conf 9999999999869996571225630334888898---8521---3375599999569
Q gi|254780529|r 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS---DPMN---SANRRIDILVEDR 341 (343)
Q Consensus 291 RA~aV~~~L~~~Gv~~~ri~~v~G~g~~~P~~~n---~t~~---~~NRRVEi~i~~~ 341 (343)
|..+|.+.|...|++.=-+..|.|+|-......- .... -.-+|+||++.+.
T Consensus 12 k~~~v~~AL~~~Gi~g~Tv~~V~G~G~~~~~~~~~r~~~~~~~~~~k~~ieivv~d~ 68 (112)
T 1hwu_A 12 KLDEVRESLAEVGVTGLTVTEVKGFGRQKGHTELYRGAEYVVDFLPKVKIEVVVDDK 68 (112)
T ss_dssp GHHHHHHHHHHTTCCCCEEEEEEEEC-------------CCCCEEEEEEEEEEECGG
T ss_pred HHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEECCCEEECCCCEEEEEEEEECHH
T ss_conf 999999999977997499992753787777421002640360201069999998779
No 36
>2wwb_C SEC61BETA, protein transport protein SEC61 subunit beta; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=20.23 E-value=32 Score=12.60 Aligned_cols=13 Identities=23% Similarity=0.332 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999999999
Q gi|254780529|r 40 FMTVLMAFFLVMW 52 (343)
Q Consensus 40 ~~TlLmaFFvll~ 52 (343)
.|+|++-|||+||
T Consensus 75 vmSl~FI~sV~~L 87 (96)
T 2wwb_C 75 VMSLLFIASVFML 87 (96)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
T ss_conf 5478999999999
Done!