Query gi|254780529|ref|YP_003064942.1| flagellar motor protein MotB [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 343
No_of_seqs 156 out of 4336
Neff 9.8
Searched_HMMs 13730
Date Wed Jun 1 10:30:21 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780529.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1r1ma_ d.79.7.1 (A:) Outer me 99.9 5E-24 3.6E-28 176.5 8.0 105 232-340 11-138 (140)
2 d2hqsc1 d.79.7.1 (C:68-173) Pe 99.9 2.4E-23 1.8E-27 171.9 10.6 100 234-337 3-105 (106)
3 d2aizp1 d.79.7.1 (P:1-134) Pep 99.9 3.3E-23 2.4E-27 171.0 10.6 100 234-337 31-133 (134)
4 d1svdm1 d.73.1.1 (M:3-110) Rib 72.0 1.9 0.00014 19.2 3.6 95 235-342 9-108 (108)
5 d2cz4a1 d.58.5.1 (A:1-100) Hyp 60.1 4.1 0.0003 16.9 3.9 48 291-340 17-64 (100)
6 d1vfja_ d.58.5.1 (A:) PII (pro 50.5 5.9 0.00043 15.9 4.3 51 291-341 12-68 (116)
7 d1wdds_ d.73.1.1 (S:) Ribulose 48.8 4.7 0.00034 16.6 2.2 96 236-343 11-121 (122)
8 d1qy7a_ d.58.5.1 (A:) PII (pro 46.6 6.7 0.00049 15.5 3.6 51 291-341 12-68 (112)
9 d2ns1b1 d.58.5.1 (B:1-112) PII 44.3 7.3 0.00053 15.3 3.7 52 290-341 11-68 (112)
10 d1bwvs_ d.73.1.1 (S:) Ribulose 39.3 8.6 0.00063 14.8 3.0 39 236-274 42-88 (138)
11 d1z2la1 c.56.5.4 (A:4-212,A:33 38.2 9 0.00065 14.7 4.7 52 266-319 75-126 (293)
12 d2piia_ d.58.5.1 (A:) PII (pro 38.1 9 0.00066 14.7 3.9 51 291-341 12-68 (112)
13 d1tgoa2 e.8.1.1 (A:348-773) Fa 35.2 9 0.00065 14.7 1.9 35 242-276 164-198 (426)
14 d2a6qa1 d.306.1.1 (A:10-92) An 34.6 9.2 0.00067 14.6 1.9 48 10-70 22-69 (83)
15 d1mwva2 a.93.1.3 (A:441-748) C 33.7 6.5 0.00048 15.6 1.0 13 31-44 102-114 (308)
16 d1s5ja2 e.8.1.1 (A:450-864) Fa 28.9 11 0.00083 14.0 1.6 33 242-275 178-210 (415)
17 d1itka2 a.93.1.3 (A:424-731) C 24.3 9.7 0.00071 14.4 0.6 12 32-44 103-114 (308)
18 d2axla1 a.4.5.43 (A:1-144) Wer 23.5 9.5 0.00069 14.5 0.4 64 237-305 4-80 (144)
19 d1ug8a_ d.68.7.1 (A:) Poly(A)- 20.6 18 0.0013 12.6 2.9 13 261-273 52-64 (87)
No 1
>d1r1ma_ d.79.7.1 (A:) Outer membrane protein class 4, RmpM, C-terminal domain {Neisseria meningitidis [TaxId: 487]}
Probab=99.89 E-value=5e-24 Score=176.46 Aligned_cols=105 Identities=23% Similarity=0.318 Sum_probs=94.7
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHEE
Q ss_conf 567455568754683565654436789861278-3389873146766787410699999999999999998699965712
Q gi|254780529|r 232 RNTPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRIS 310 (343)
Q Consensus 232 ~~~~lF~~gsa~l~~~~~~~l~~ia~~l~~~~~-~i~IeGHTD~~p~~g~~~~Nw~LS~~RA~aV~~~L~~~Gv~~~ri~ 310 (343)
...+||++||+.|+++++..|++++..|+.+|. .|.|+||||++ |+..+||+||.+||.+|+.||+..|++++||.
T Consensus 11 ~~~~~F~~~s~~l~~~~~~~L~~l~~~l~~~~~~~i~I~GhtD~~---G~~~~N~~LS~~RA~~V~~~L~~~Gi~~~ri~ 87 (140)
T d1r1ma_ 11 SAKTLFGFDKDSLRAEAQDNLKVLAQRLSRTNIQSVRVEGHTDFM---GSDKYNQALSERRAYVVANNLVSNGVPVSRIS 87 (140)
T ss_dssp EHHHHHTTSSSCCCHHHHHHHHHHHHHHTTSCEEEEEEEEECCSS---SCHHHHHHHHHHHHHHHHHHHHHTTCCGGGEE
T ss_pred CCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEECCC---CCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEE
T ss_conf 773066289742798999999999998721997089999860654---42121036788999999999997599937599
Q ss_pred EEEECCCCCCCCCCCCCC----------------------CCCCEEEEEEEC
Q ss_conf 256303348888988521----------------------337559999956
Q gi|254780529|r 311 KISGFAHHRLKIASDPMN----------------------SANRRIDILVED 340 (343)
Q Consensus 311 ~v~G~g~~~P~~~n~t~~----------------------~~NRRVEi~i~~ 340 (343)
+.|||+++|+++|.++. ..||||||.|..
T Consensus 88 -~~g~Ge~~P~~~n~~~~~~~~~~~~~~~~~nr~~~i~~~~~nRRVEi~v~~ 138 (140)
T d1r1ma_ 88 -AVGLGESQAQMTQVCEAEVAKLGAKVSKAKKREALIACIEPDRRVDVKIRS 138 (140)
T ss_dssp -EEECTTTTCCCHHHHHHHHHTCCSSCCSSHHHHHHHHHTGGGSEEEEEEEE
T ss_pred -EEEEECCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHCCCCCCCEEEEEEE
T ss_conf -999725787788969889853022012332025555046899858999982
No 2
>d2hqsc1 d.79.7.1 (C:68-173) Peptidoglycan-associated lipoprotein, PAL, periplasmic domain {Escherichia coli [TaxId: 562]}
Probab=99.89 E-value=2.4e-23 Score=171.87 Aligned_cols=100 Identities=23% Similarity=0.286 Sum_probs=93.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHEEEE
Q ss_conf 7455568754683565654436789861278-338987314676678741069999999999999999869996571225
Q gi|254780529|r 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312 (343)
Q Consensus 234 ~~lF~~gsa~l~~~~~~~l~~ia~~l~~~~~-~i~IeGHTD~~p~~g~~~~Nw~LS~~RA~aV~~~L~~~Gv~~~ri~~v 312 (343)
.++|++||+.|++.+...|++++..|+.+|. .|.|+||||+. |...+||.||.+||.+|+.||+..|+++.||. +
T Consensus 3 ~iyF~~~s~~l~~~~~~~L~~l~~~l~~~~~~~i~I~GhtD~~---g~~~~N~~LS~~RA~~V~~~L~~~Gi~~~ri~-~ 78 (106)
T d2hqsc1 3 IVYFDLDKYDIRSDFAQMLDAHANFLRSNPSYKVTVEGHADER---GTPEYNISLGERRANAVKMYLQGKGVSADQIS-I 78 (106)
T ss_dssp EEECCTTCCCCCGGGHHHHHHHHHHHHHCTTCCEEEEECCCSS---SCHHHHHHHHHHHHHHHHHHHHHTTCCGGGEE-E
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC---CHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE-E
T ss_conf 8994799773898899999999999986899579998433422---10466655889987679999986698664489-9
Q ss_pred EECCCCCCCCCCCCCC--CCCCEEEEE
Q ss_conf 6303348888988521--337559999
Q gi|254780529|r 313 SGFAHHRLKIASDPMN--SANRRIDIL 337 (343)
Q Consensus 313 ~G~g~~~P~~~n~t~~--~~NRRVEi~ 337 (343)
.|||+++|+++|.++. ++||||||+
T Consensus 79 ~g~G~~~p~~~~~~~~~~~~NRRVeii 105 (106)
T d2hqsc1 79 VSYGKEKPAVLGHDEAAYSKNRRAVLV 105 (106)
T ss_dssp EECTTSSCSSCSSSHHHHHHHSEEEEE
T ss_pred EEECCCCCCCCCCCHHHHHHCCCEEEE
T ss_conf 983564767899097799714949996
No 3
>d2aizp1 d.79.7.1 (P:1-134) Peptidoglycan-associated lipoprotein, PAL, periplasmic domain {Haemophilus influenzae [TaxId: 727]}
Probab=99.89 E-value=3.3e-23 Score=171.00 Aligned_cols=100 Identities=19% Similarity=0.213 Sum_probs=93.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHEEEE
Q ss_conf 7455568754683565654436789861278-338987314676678741069999999999999999869996571225
Q gi|254780529|r 234 TPMFDKSSSIPLPETIVVLQKIGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKI 312 (343)
Q Consensus 234 ~~lF~~gsa~l~~~~~~~l~~ia~~l~~~~~-~i~IeGHTD~~p~~g~~~~Nw~LS~~RA~aV~~~L~~~Gv~~~ri~~v 312 (343)
.++|++||+.|++.++..|++++..|+.+|+ .|.|.||||+. |...+||.||.+||.+|+.||+..|+++.||. +
T Consensus 31 ~I~F~~~s~~L~~~~~~~L~~la~~l~~~~~~~i~I~GhtD~~---g~~~~N~~LS~~RA~~V~~~L~~~Gi~~~ri~-~ 106 (134)
T d2aizp1 31 TVYFGFDKYDITGEYVQILDAHAAYLNATPAAKVLVEGNTDER---GTPEYNIALGQRRADAVKGYLAGKGVDAGKLG-T 106 (134)
T ss_dssp EEECCTTCCCCCHHHHHHHHHHHHHHHHSTTCCEEEEEECCSS---SCHHHHHHHHHHHHHHHHHHHHHTTCCGGGEE-E
T ss_pred EEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC---CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCE-E
T ss_conf 1883799812498899999999999986999689996043433---22111013789999999989977187534551-3
Q ss_pred EECCCCCCCCCCCCCC--CCCCEEEEE
Q ss_conf 6303348888988521--337559999
Q gi|254780529|r 313 SGFAHHRLKIASDPMN--SANRRIDIL 337 (343)
Q Consensus 313 ~G~g~~~P~~~n~t~~--~~NRRVEi~ 337 (343)
.|||+++|+.+|.+.. ++||||||+
T Consensus 107 ~g~G~~~P~~~~~~~~~~~~NRRVeiv 133 (134)
T d2aizp1 107 VSYGEEKPAVLGHDEAAYSKNRRAVLA 133 (134)
T ss_dssp EECTTTSCSSCSCSHHHHHHHSEEEEE
T ss_pred EECCCCCCCCCCCCHHHHHCCCCEEEE
T ss_conf 775433757889197798623989995
No 4
>d1svdm1 d.73.1.1 (M:3-110) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Halothiobacillus neapolitanus [TaxId: 927]}
Probab=71.97 E-value=1.9 Score=19.19 Aligned_cols=95 Identities=12% Similarity=0.120 Sum_probs=55.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCHHHH---HHHHHHHHHHHHHH--CCCCHHHE
Q ss_conf 45556875468356565443678986127833898731467667874106999---99999999999998--69996571
Q gi|254780529|r 235 PMFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASPFRNIARDNWRL---SLDRAYSAYQVLMK--SGVSEDRI 309 (343)
Q Consensus 235 ~lF~~gsa~l~~~~~~~l~~ia~~l~~~~~~i~IeGHTD~~p~~g~~~~Nw~L---S~~RA~aV~~~L~~--~Gv~~~ri 309 (343)
.-|++=|.-+.-....+..+|.-+| .....+-|| |||...+.+.|=.-|.| ...++..|...|.. .-.+..-
T Consensus 9 ~~~eTfSyLP~Ltde~I~~QV~yll-~qGw~~~~E-~~d~~~~r~~yW~mwklPmf~~~d~~~Vl~Ele~c~~~~p~~Y- 85 (108)
T d1svdm1 9 LKYETFSYLPPMNAERIRAQIKYAI-AQGWSPGIE-HVEVKNSMNQYWYMWKLPFFGEQNVDNVLAEIEACRSAYPTHQ- 85 (108)
T ss_dssp CCCSTTTTSCCCCHHHHHHHHHHHH-HTTCEEEEE-EECGGGTTCSCCEEESCCCTTCCCHHHHHHHHHHHHHHSTTSE-
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHH-HCCCEEEEE-ECCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCE-
T ss_conf 4333112589999999999999999-789984676-3346777676243537777478768899999999998798777-
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCEEEEEEECCC
Q ss_conf 225630334888898852133755999995699
Q gi|254780529|r 310 SKISGFAHHRLKIASDPMNSANRRIDILVEDRQ 342 (343)
Q Consensus 310 ~~v~G~g~~~P~~~n~t~~~~NRRVEi~i~~~~ 342 (343)
+++.||-.. ++-|.++++|.+.+
T Consensus 86 VRliG~D~~----------~q~q~~~fIV~RPn 108 (108)
T d1svdm1 86 VKLVAYDNY----------AQSLGLAFVVYRGN 108 (108)
T ss_dssp EEEEEEETT----------TTEEEEEEEEECCC
T ss_pred EEEEEECCC----------CCEEEEEEEEECCC
T ss_conf 999998388----------64899999997889
No 5
>d2cz4a1 d.58.5.1 (A:1-100) Hypothetical protein TTHA0516 {Thermus thermophilus [TaxId: 274]}
Probab=60.13 E-value=4.1 Score=16.92 Aligned_cols=48 Identities=13% Similarity=0.188 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHCCCCHHHEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEC
Q ss_conf 99999999998699965712256303348888988521337559999956
Q gi|254780529|r 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVED 340 (343)
Q Consensus 291 RA~aV~~~L~~~Gv~~~ri~~v~G~g~~~P~~~n~t~~~~NRRVEi~i~~ 340 (343)
+...|.+.|.+.|+..==+..+.|+|....... ..++.|=|||+++..
T Consensus 17 ~~~~v~~~L~~~Gv~G~Tv~~v~G~G~~~~~~~--~~~g~~v~Ieivv~~ 64 (100)
T d2cz4a1 17 LEKRLVEEVKRLGAKGYTITPARGEGSRGIRSV--DWEGQNIRLETIVSE 64 (100)
T ss_dssp GHHHHHHHHHHTTCCCCEEEEEBCTTCCCTTCS--CSTTCEEEEEEEECH
T ss_pred HHHHHHHHHHHCCCCCEEEEECEEECCCCCCCC--CCCCCEEEEEEEECH
T ss_conf 899999999978997469995889844787735--480422899999888
No 6
>d1vfja_ d.58.5.1 (A:) PII (product of glnB) {Thermus thermophilus [TaxId: 274]}
Probab=50.52 E-value=5.9 Score=15.90 Aligned_cols=51 Identities=14% Similarity=0.261 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHCCCCHHHEEEEEECCCCCCCC---CCCCC---CCCCCEEEEEEECC
Q ss_conf 99999999998699965712256303348888---98852---13375599999569
Q gi|254780529|r 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKI---ASDPM---NSANRRIDILVEDR 341 (343)
Q Consensus 291 RA~aV~~~L~~~Gv~~~ri~~v~G~g~~~P~~---~n~t~---~~~NRRVEi~i~~~ 341 (343)
|..+|.+.|...|++.=-+..|.|||-.+... ..... --.-++|||++.+.
T Consensus 12 kl~~V~~aL~~~Gv~g~Tv~~v~G~G~~~~~~~~~~g~~~~~~~~~k~~ieivv~d~ 68 (116)
T d1vfja_ 12 KLNEVLKALFQAEVRGLTLSRVQGHGGETERVETYRGTTVKMELHEKVRLEIGVSEP 68 (116)
T ss_dssp GHHHHHHHHHHTTCCCCEEEEEEEECTTCCCHHHHTTSCCSTTCEEEEEEEEEECGG
T ss_pred HHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEEEECHH
T ss_conf 999999999868998589994070477654432022427772017745899998589
No 7
>d1wdds_ d.73.1.1 (S:) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Rice (Oryza sativa) [TaxId: 4530]}
Probab=48.79 E-value=4.7 Score=16.56 Aligned_cols=96 Identities=20% Similarity=0.285 Sum_probs=53.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEE----------EEECCCCCCCCCCCHHHHH---HHHHHHHHHHHHH-
Q ss_conf 5556875468356565443678986127833898----------7314676678741069999---9999999999998-
Q gi|254780529|r 236 MFDKSSSIPLPETIVVLQKIGEVLAHSTEVISIR----------GHTDASPFRNIARDNWRLS---LDRAYSAYQVLMK- 301 (343)
Q Consensus 236 lF~~gsa~l~~~~~~~l~~ia~~l~~~~~~i~Ie----------GHTD~~p~~g~~~~Nw~LS---~~RA~aV~~~L~~- 301 (343)
.|++=|.-+.-...++.++|.-+| .....+-|| .|+|..-+.+.|=.=|.|. ...+..|...|..
T Consensus 11 k~ETfSyLP~ltd~qI~~QI~yll-~qGw~p~lEf~d~~~~~~~~h~~p~~~~~~yW~mWkLPmFg~~d~~~Vl~Ele~C 89 (122)
T d1wdds_ 11 KFETLSYLPPLTVEDLLKQIEYLL-RSKWVPCLEFSKVGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDATQVLKELEEA 89 (122)
T ss_dssp CCSTTTTSSCCCHHHHHHHHHHHH-HTTCEEEEEEESCCSCBCSSCCSTTCCBSCCCEEESCCCTTCCCHHHHHHHHHHH
T ss_pred CCEEECCCCCCCHHHHHHHHHHHH-HCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHH
T ss_conf 211101578899799999999999-8799555886478761026899844210481014576776777989999999999
Q ss_pred -CCCCHHHEEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCC
Q ss_conf -699965712256303348888988521337559999956999
Q gi|254780529|r 302 -SGVSEDRISKISGFAHHRLKIASDPMNSANRRIDILVEDRQG 343 (343)
Q Consensus 302 -~Gv~~~ri~~v~G~g~~~P~~~n~t~~~~NRRVEi~i~~~~~ 343 (343)
.-.+.. .+++.||-..+ +-|.++++|.+..|
T Consensus 90 ~k~~p~~-YVRligfD~~~----------q~q~~sfIV~RP~G 121 (122)
T d1wdds_ 90 KKAYPDA-FVRIIGFDNVR----------QVQLISFIAYKPPG 121 (122)
T ss_dssp HHHCTTS-EEEEEEEETTT----------TEEEEEEEEECCTT
T ss_pred HHHCCCC-EEEEEEEECCC----------CEEEEEEEEECCCC
T ss_conf 9979876-58999981766----------77999999877999
No 8
>d1qy7a_ d.58.5.1 (A:) PII (product of glnB) {Cyanobacteria (Synechococcus sp.) pcc 7942 [TaxId: 1131]}
Probab=46.55 E-value=6.7 Score=15.50 Aligned_cols=51 Identities=18% Similarity=0.300 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHCCCCHHHEEEEEECCCCCCCCCCCC----C--CCCCCEEEEEEECC
Q ss_conf 999999999986999657122563033488889885----2--13375599999569
Q gi|254780529|r 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIASDP----M--NSANRRIDILVEDR 341 (343)
Q Consensus 291 RA~aV~~~L~~~Gv~~~ri~~v~G~g~~~P~~~n~t----~--~~~NRRVEi~i~~~ 341 (343)
|..+|.+.|.+.|++.=-+..|.|||..+....... . --.-+++||++.+.
T Consensus 12 k~~~v~~AL~~~G~~g~Tv~~v~G~G~~~g~~~~~~~~~~~~~~~~k~~ieivv~d~ 68 (112)
T d1qy7a_ 12 KLDEVKIALVNAGIVGMTVSEVRGFGRQKGQTERYRGAEYTVEFLQKLKLEIVVEDA 68 (112)
T ss_dssp GHHHHHHHHHHTTCCCCEEEEEEEEEEEECCCSSCTTSSEEEEEEEEEEEEEEECGG
T ss_pred HHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCEECCCEEEECCCCEEEEEEEECHH
T ss_conf 999999999967997689964288757788542234613351205459999998789
No 9
>d2ns1b1 d.58.5.1 (B:1-112) PII-homolog GlnK {Shigella flexneri [TaxId: 623]}
Probab=44.35 E-value=7.3 Score=15.28 Aligned_cols=52 Identities=13% Similarity=0.252 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHCCCCHHHEEEEEECCCCCCCC---CCCCC---CCCCCEEEEEEECC
Q ss_conf 999999999998699965712256303348888---98852---13375599999569
Q gi|254780529|r 290 DRAYSAYQVLMKSGVSEDRISKISGFAHHRLKI---ASDPM---NSANRRIDILVEDR 341 (343)
Q Consensus 290 ~RA~aV~~~L~~~Gv~~~ri~~v~G~g~~~P~~---~n~t~---~~~NRRVEi~i~~~ 341 (343)
.|..+|.+.|.+.|++.=-+..|.|+|..+... ..... --.-++|||++.+.
T Consensus 11 ~k~~~V~~AL~~~G~~g~Tv~~v~G~G~~~~~~~~~~g~~~~~~~~~k~~ieivv~d~ 68 (112)
T d2ns1b1 11 FKLEDVREALSSIGIQGLTVTEVKGFGRQKGHAELYRGAEFSVNFLPKVKIDVAIADD 68 (112)
T ss_dssp GGHHHHHHHHHHTTCCCCEEEEEEECSSSCCCCEEETTEEECCCCEEEEEEEEEEEGG
T ss_pred HHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEECCCEEEEEEEEEEEEEEEECHH
T ss_conf 9999999999978997189997205315678641443630132111178999998549
No 10
>d1bwvs_ d.73.1.1 (S:) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Galdieria partita [TaxId: 83374]}
Probab=39.28 E-value=8.6 Score=14.77 Aligned_cols=39 Identities=13% Similarity=0.104 Sum_probs=27.3
Q ss_pred CCCCCCCCC-------CHHHHHHHHHHHHHHHHCCC-CEEEEEEECC
Q ss_conf 555687546-------83565654436789861278-3389873146
Q gi|254780529|r 236 MFDKSSSIP-------LPETIVVLQKIGEVLAHSTE-VISIRGHTDA 274 (343)
Q Consensus 236 lF~~gsa~l-------~~~~~~~l~~ia~~l~~~~~-~i~IeGHTD~ 274 (343)
.|...+-.+ ......+|.+|..-++.+|+ .|+|-|.-..
T Consensus 42 ~~r~~yW~mwklPmf~~~d~~~Vl~Ele~C~k~~p~~YVRliGfDn~ 88 (138)
T d1bwvs_ 42 HPRNAYWEIWGLPLFDVTDPAAVLFEINACRKARSNFYIKVVGFSSV 88 (138)
T ss_dssp CTTCCCCEECSSCBCSCCCHHHHHHHHHHHHHHCTTSEEEEEEEECC
T ss_pred CCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECC
T ss_conf 64422221134652058899999999999999798666999998476
No 11
>d1z2la1 c.56.5.4 (A:4-212,A:330-413) Allantoate amidohydrolase AllC catalytic domain {Escherichia coli [TaxId: 562]}
Probab=38.17 E-value=9 Score=14.66 Aligned_cols=52 Identities=13% Similarity=0.037 Sum_probs=28.7
Q ss_pred EEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHEEEEEECCCCC
Q ss_conf 389873146766787410699999999999999998699965712256303348
Q gi|254780529|r 266 ISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSGVSEDRISKISGFAHHR 319 (343)
Q Consensus 266 i~IeGHTD~~p~~g~~~~Nw~LS~~RA~aV~~~L~~~Gv~~~ri~~v~G~g~~~ 319 (343)
|.|-.|.|++|-+|.+.. -|...=+..|++.|...|+.+.|=+.|..|.+..
T Consensus 75 v~iGSHlDtV~~gG~~Dg--~~Gv~a~le~~~~l~~~~~~~~~~i~vv~f~~EE 126 (293)
T d1z2la1 75 VLSGSHIDTVVNGGNLDG--QFGALAAWLAIDWLKTQYGAPLRTVEVVAMAEEE 126 (293)
T ss_dssp EEEEEECCCCTTBCSSTT--HHHHHHHHHHHHHHHHHHCSCSEEEEEEEESCSS
T ss_pred EEEEEECCCCCCCCCCCC--CHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCC
T ss_conf 686220265898888787--4027999999877876088789996112211464
No 12
>d2piia_ d.58.5.1 (A:) PII (product of glnB) {Escherichia coli [TaxId: 562]}
Probab=38.14 E-value=9 Score=14.66 Aligned_cols=51 Identities=16% Similarity=0.298 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHCCCCHHHEEEEEECCCCCCCCCC----C--CCCCCCCEEEEEEECC
Q ss_conf 9999999999869996571225630334888898----8--5213375599999569
Q gi|254780529|r 291 RAYSAYQVLMKSGVSEDRISKISGFAHHRLKIAS----D--PMNSANRRIDILVEDR 341 (343)
Q Consensus 291 RA~aV~~~L~~~Gv~~~ri~~v~G~g~~~P~~~n----~--t~~~~NRRVEi~i~~~ 341 (343)
|-.+|.+.|.+.|++.=-+..|.|+|..+....- + +.--.-++|||++.+.
T Consensus 12 kl~~v~~aL~~~Gv~g~Tv~~v~G~G~~~~~~~~~~~~~~~~~~~~k~~ieivv~d~ 68 (112)
T d2piia_ 12 KLDDVREALAEVGITGMTVTEVKGFGRQKGHTELYRGAEYMVDFLPKVKIEIVVPDD 68 (112)
T ss_dssp GHHHHHHHHHHHTCCCCEEEEEEECSCCTTCCCSCCCCSSCCCCEEEEEEEEEECGG
T ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCEEECCEEECCCCCEEEEEEEECHH
T ss_conf 999999999968998599997427887555333340420030315357999998838
No 13
>d1tgoa2 e.8.1.1 (A:348-773) Family B DNA polymerase {Archaeon Thermococcus gorgonarius [TaxId: 71997]}
Probab=35.22 E-value=9 Score=14.66 Aligned_cols=35 Identities=6% Similarity=-0.154 Sum_probs=20.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCC
Q ss_conf 54683565654436789861278338987314676
Q gi|254780529|r 242 SIPLPETIVVLQKIGEVLAHSTEVISIRGHTDASP 276 (343)
Q Consensus 242 a~l~~~~~~~l~~ia~~l~~~~~~i~IeGHTD~~p 276 (343)
..++..++..|......+.+.-+.-.|.||||++=
T Consensus 164 ~~iT~~GR~~i~~~~~~i~~~~g~~ViYgDTDSi~ 198 (426)
T d1tgoa2 164 ESVTAWGRQYIETTIREIEEKFGFKVLYADTDGFF 198 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCEEEEEESSEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCEE
T ss_conf 43479999999999999999719823662056168
No 14
>d2a6qa1 d.306.1.1 (A:10-92) Antitoxin YefM {Escherichia coli [TaxId: 562]}
Probab=34.57 E-value=9.2 Score=14.58 Aligned_cols=48 Identities=8% Similarity=0.200 Sum_probs=30.9
Q ss_pred CCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 7688689998216888878874318879999999999999999975089999999999853
Q gi|254780529|r 10 ENDQFIIIKKKVAIDDTPNNLGSWKIVYADFMTVLMAFFLVMWIINATDDDTKKAIEQYFN 70 (343)
Q Consensus 10 ~~~~~~iikr~~~~~~~~~~~~~W~vtyAD~~TlLmaFFvll~s~s~~d~~k~~~i~~~f~ 70 (343)
.+++||||.|+++ ..+=+++..|+=.|+=++.+| + ++.-.+.+..+..
T Consensus 22 ~~~epviItr~~~-------~~~VliS~~d~~sl~ETl~ll----s--~p~n~~~L~~s~~ 69 (83)
T d2a6qa1 22 EDHAPILITRQNG-------EACVLMSLEEYNSLEETAYLL----R--SPANARRLMDSID 69 (83)
T ss_dssp HHTCCEEEECTTS-------CEEEEEEHHHHHHHHHHHHHH----H--SHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCC-------CCEEEECHHHHHHHHHHHHHH----C--CHHHHHHHHHHHH
T ss_conf 5698399980899-------875885799999999999997----1--9899999999999
No 15
>d1mwva2 a.93.1.3 (A:441-748) Catalase-peroxidase KatG {Burkholderia pseudomallei [TaxId: 28450]}
Probab=33.69 E-value=6.5 Score=15.58 Aligned_cols=13 Identities=23% Similarity=0.470 Sum_probs=9.2
Q ss_pred CCHHHHHHHHHHHH
Q ss_conf 43188799999999
Q gi|254780529|r 31 GSWKIVYADFMTVL 44 (343)
Q Consensus 31 ~~W~vtyAD~~TlL 44 (343)
+.| ||||||++|=
T Consensus 102 ~~~-iS~ADL~~LA 114 (308)
T d1mwva2 102 GKQ-VSLADLIVLA 114 (308)
T ss_dssp TCC-CCHHHHHHHH
T ss_pred CCC-CHHHHHHHHH
T ss_conf 663-0178899999
No 16
>d1s5ja2 e.8.1.1 (A:450-864) Family B DNA polymerase {Sulfolobus solfataricus [TaxId: 2287]}
Probab=28.90 E-value=11 Score=13.96 Aligned_cols=33 Identities=12% Similarity=0.025 Sum_probs=15.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCC
Q ss_conf 5468356565443678986127833898731467
Q gi|254780529|r 242 SIPLPETIVVLQKIGEVLAHSTEVISIRGHTDAS 275 (343)
Q Consensus 242 a~l~~~~~~~l~~ia~~l~~~~~~i~IeGHTD~~ 275 (343)
+.++..++..|......+.+.. .-.|-|+||++
T Consensus 178 ~~iT~~GR~~i~~~~~~~~~~g-~~viygDTDSv 210 (415)
T d1s5ja2 178 ESVTALGRYVITSTVKKAREEG-LTVLYGDTDSL 210 (415)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTT-CCEEEEETTEE
T ss_pred HHHHHHHHHHHHHHHHHHHHCC-CEEEEEECCEE
T ss_conf 8999999999998888766059-62466423314
No 17
>d1itka2 a.93.1.3 (A:424-731) Catalase-peroxidase KatG {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=24.32 E-value=9.7 Score=14.43 Aligned_cols=12 Identities=17% Similarity=0.277 Sum_probs=8.7
Q ss_pred CHHHHHHHHHHHH
Q ss_conf 3188799999999
Q gi|254780529|r 32 SWKIVYADFMTVL 44 (343)
Q Consensus 32 ~W~vtyAD~~TlL 44 (343)
.| ||||||++|=
T Consensus 103 ~~-IS~ADL~~LA 114 (308)
T d1itka2 103 TQ-VSLADLIVLG 114 (308)
T ss_dssp BC-CCHHHHHHHH
T ss_pred CC-CCHHHHHHHH
T ss_conf 86-2099999999
No 18
>d2axla1 a.4.5.43 (A:1-144) Werner syndrome ATP-dependent helicase WRN {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.51 E-value=9.5 Score=14.51 Aligned_cols=64 Identities=11% Similarity=-0.055 Sum_probs=40.4
Q ss_pred CCCCCCCCCHHHHHHHHH------------HHHHHHHCCC-CEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 556875468356565443------------6789861278-338987314676678741069999999999999999869
Q gi|254780529|r 237 FDKSSSIPLPETIVVLQK------------IGEVLAHSTE-VISIRGHTDASPFRNIARDNWRLSLDRAYSAYQVLMKSG 303 (343)
Q Consensus 237 F~~gsa~l~~~~~~~l~~------------ia~~l~~~~~-~i~IeGHTD~~p~~g~~~~Nw~LS~~RA~aV~~~L~~~G 303 (343)
++..+.+.+.+++.+|.- +..+|+.... .| .++| |..+.-| .--++|..-..++.+.|+..|
T Consensus 4 ~~~~~~D~T~eA~~iLs~V~~~~~rfg~~~iidiL~Gs~~~kI-~~~~-~~l~~yG---~Gk~~s~~~w~~li~qli~~G 78 (144)
T d2axla1 4 SEDTSWDFGPQAFKLLSAVDILGEKFGIGLPILFLRGSNSQRL-ADQY-RRHSLFG---TGKDQTESWWKAFSRQLITEG 78 (144)
T ss_dssp CCCSEEECHHHHHHHHHHHHHTTTCSCSHHHHHHHTCCSCSHH-HHHT-CSCTTTT---GGGGSCHHHHHHHHHHHHHHS
T ss_pred CCCCCEEHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHH-HHHH-HCCCCCC---CCCCCCHHHHHHHHHHHHHCC
T ss_conf 8656402589999999999995462462189999985333777-7776-4031218---777689999999999999858
Q ss_pred CC
Q ss_conf 99
Q gi|254780529|r 304 VS 305 (343)
Q Consensus 304 v~ 305 (343)
+-
T Consensus 79 ~L 80 (144)
T d2axla1 79 FL 80 (144)
T ss_dssp SE
T ss_pred CC
T ss_conf 60
No 19
>d1ug8a_ d.68.7.1 (A:) Poly(A)-specific ribonuclease PARN {Mouse (Mus musculus) [TaxId: 10090]}
Probab=20.55 E-value=18 Score=12.65 Aligned_cols=13 Identities=8% Similarity=0.026 Sum_probs=7.7
Q ss_pred HCCCCEEEEEEEC
Q ss_conf 1278338987314
Q gi|254780529|r 261 HSTEVISIRGHTD 273 (343)
Q Consensus 261 ~~~~~i~IeGHTD 273 (343)
.+|..|.++-.+.
T Consensus 52 kfp~kI~vet~~~ 64 (87)
T d1ug8a_ 52 KYPKGIHVETLET 64 (87)
T ss_dssp HSSSSEEEEEECC
T ss_pred HCCCCCEEEEEEE
T ss_conf 6788606565650
Done!